Query 004561
Match_columns 745
No_of_seqs 237 out of 2289
Neff 9.2
Searched_HMMs 29240
Date Tue Mar 26 18:34:42 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004561.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1863-1867//hhsearch_pdb/004561hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3se6_A Endoplasmic reticulum a 1.0 1 1 1216.9 73.3 721 4-744 197-963 (967)
2 4fke_A Aminopeptidase N; zinc 1.0 1 1 1181.7 61.4 722 4-744 144-905 (909)
3 2xdt_A Endoplasmic reticulum a 1.0 1 1 1178.4 73.2 717 4-742 135-893 (897)
4 1z5h_A Tricorn protease intera 1.0 1 1 1081.8 58.4 676 4-730 98-777 (780)
5 2gtq_A Aminopeptidase N; alani 1.0 1 1 739.3 49.8 615 4-644 114-785 (867)
6 3b34_A Aminopeptidase N; prote 1.0 1 1 661.7 56.6 679 4-719 139-874 (891)
7 3ebh_A PFA-M1, M1 family amino 1.0 1 1 653.7 49.7 605 4-639 121-800 (889)
8 3rjo_A Endoplasmic reticulum a 1.0 1 1 592.6 46.7 398 325-742 1-410 (419)
9 3cia_A Cold-active aminopeptid 1.0 1 1 576.0 15.0 411 4-489 143-562 (605)
10 3u9w_A Leukotriene A-4 hydrola 1.0 1 1 553.3 20.1 327 4-344 131-473 (608)
No 1
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=1.00 E-value=1 Score=1216.90 Aligned_cols=721 Identities=34% Similarity=0.606 Sum_probs=663.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEECCCCCCE-EECCCEEEEEEEECCCCCCCEEEEEEECCEEEEE
Q ss_conf 679847878112326779983088999996799759827765420-3449949999980688876278999971028871
Q 004561 4 FKGQPPDARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVED 82 (745)
Q Consensus 4 ~~~ep~~Ar~~fPc~Dep~~ka~f~l~i~~p~~~~~~sn~~~~~~-~~~~~~~~~~f~~t~~~~~y~~a~~vg~f~~~~~ 82 (745)
-||||++||+||||||||++||+|+++|++|++|+++|||++.++ ...+++++++|..|||||+|++||+||+|+.++.
T Consensus 197 Tq~ep~~AR~~FPC~DeP~~KAtf~itI~~p~~~~alSN~~~~~~~~~~~g~~~~~F~~t~pmstYLva~~vg~f~~~~~ 276 (967)
T 3se6_A 197 TDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKTIELEGGLLEDHFETTVKMSTYLVAYIVCDFHSLSG 276 (967)
T ss_dssp EECTTTTGGGTSCBCCSTTCCBEEEEEEEECTTCEEEESSCEEEEEECTTSCEEEEECCCCSBCGGGCCEEEECCEEEEE
T ss_pred EECCCCCCCEEEEECCCCCCEEEEEEEEEECCCCEEEECCCCCCCEECCCCEEEEEEECCCCCCCEEEEEEEECEEEEEE
T ss_conf 80456887769996477674258999999778768995887666056489839999935888643069999923178976
Q ss_pred EECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 10598379999718840039999999999999999982899999766714438999852123552011035213368888
Q 004561 83 HTSDGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHS 162 (745)
Q Consensus 83 ~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yP~~k~~~v~~P~~~~g~me~~gli~~~e~~ll~~~~~~ 162 (745)
.+.+|+++++|++|+..++++++++.+.+++++|+++||+|||++|+|+|++|+|..|||||||+++|+|..+++++..+
T Consensus 277 ~~~~gv~v~v~~~p~~~~~~~~al~~~~~~l~~~e~~fg~~YP~~k~d~v~vPdf~~GaMEn~Glity~e~~ll~d~~~s 356 (967)
T 3se6_A 277 FTSSGVKVSIYASPDKRNQTHYALQASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWGLITYRETSLLFDPKTS 356 (967)
T ss_dssp ECTTCCEEEEEECGGGGGGGHHHHHHHHHHHHHHHHHHTCCCCSSEEEEEEESSCSSSEECCTTEEEEEGGGTCCCTTTC
T ss_pred ECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHEECCCCCC
T ss_conf 42799379998475669999999999999999999855988886436089816877765136775420101031276668
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 18889999999999999987406413565524589787999999999852181137899999998988521023899983
Q 004561 163 AAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPI 242 (745)
Q Consensus 163 ~~~~~~~~~~~iaHEiaHqWfG~~vt~~~w~~~Wl~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~ 242 (745)
+...++.+..+||||+|||||||+||++||+|+|||||||+|+++++++..+|++.....++.+...++..|+..+++|+
T Consensus 357 ~~~~k~~~~~vIaHElAHqWFGnlVT~~wW~dlWLnEGFAty~e~~~~~~~~p~~~~~~~~~~~~~~al~~D~~~~~~Pi 436 (967)
T 3se6_A 357 SASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNATYPELQFDDYFLNVCFEVITKDSLNSSRPI 436 (967)
T ss_dssp CHHHHHHHHHHHHHHHGGGTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHHHHTTTTSTTCCCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 77766768989999999987558325687765128899999999999997464011899999999999975112378983
Q ss_pred EEECCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--------------
Q ss_conf 652499201200155223233208999999854899999999999986136999978999999961--------------
Q 004561 243 EVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEG-------------- 308 (745)
Q Consensus 243 ~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~iG~e~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~-------------- 308 (745)
..++.++.++...|+.++|.||+++|+||+..+|++.|+++|+.|+++|+|++++++|||++++++
T Consensus 437 ~~~v~~~~~i~~~Fd~i~Y~KGa~vL~mL~~~lG~e~F~~gLr~Yl~~~~~~nat~~Dl~~~l~~~~~~~~~~~~~~~~~ 516 (967)
T 3se6_A 437 SKPAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKFSYRNAKNDDLWSSLSNSCLESDFTSGGVCHS 516 (967)
T ss_dssp SCCCCSHHHHHHTSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTEEECHHHHHHHHHCC--------------
T ss_pred EEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 55069878987742355556899999999987678999999999999860179999999999998762034432221222
Q ss_pred -------------CCCCHHHHHHHHHCCCCCCEEEEEEECCEEEEEEEEECCCCCC---------CCCEEEEEEEEEECC
Q ss_conf -------------1997899998843388953499997188899999831279999---------998038989999854
Q 004561 309 -------------SGEPVNKLMNSWTKQKGYPVISVKVKEEKLELEQSQFLSSGSP---------GDGQWIVPITLCCGS 366 (745)
Q Consensus 309 -------------~~~~~~~~~~~W~~q~G~P~i~v~~~~~~i~i~Q~rf~~~~~~---------~~~~w~iPl~~~~~~ 366 (745)
+|.++++||++|+.|+|||+++|++++++++|+|+||+.++.. ....|+|||+|+++.
T Consensus 517 ~~~~~~~~~~~~~s~~dv~~~m~~W~~q~G~Pvl~V~~~~~~~~l~Q~rf~~~~~~~~~~~~~~~~~~~W~IPl~~~~~~ 596 (967)
T 3se6_A 517 DPKMTSNMLAFLGENAEVKEMMTTWTLQKGIPLLVVKQDGCSLRLQQERFLQGVFQEDPEWRALQERYLWHIPLTYSTSS 596 (967)
T ss_dssp -----------CCCCCCHHHHHHHHHHSCSCEEEEEEEETTEEEEEEEECCCC-----------CCSCCCCCCEEEEESS
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEECC
T ss_conf 22233322112567867999999986489983799996598799996344378887764335556785699999999689
Q ss_pred CCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCEEECCCCEEEEEEECCHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Q ss_conf 6611117741661089813653444567899887057367970259997598889999999981--39992418989999
Q 004561 367 YDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIEM--KQLSETDRFGILDD 444 (745)
Q Consensus 367 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~i~~N~~~~gyyrv~Yd~~~~~~l~~~l~~--~~i~~~~r~~li~D 444 (745)
++....+|+..++..+.++ .++ +||++|.++.||||||||+.+|.+|+.+|.. ..|++.+|+|||+|
T Consensus 597 ~~~~~~~~l~~~~~~i~~~---------~~~--~wi~~N~~~~GyyRV~Yd~~~w~~l~~~L~~~~~~i~~~~Ra~li~D 665 (967)
T 3se6_A 597 SNVIHRHILKSKTDTLDLP---------EKT--SWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHD 665 (967)
T ss_dssp CCCCEEECCCSSEEEEECS---------SCC--SCEEESGGGCSSCEEEEETTHHHHHHHHHHHHGGGSCHHHHHHHHHH
T ss_pred CCCCCEEEECCCCEEEECC---------CCC--CEEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 9841059963784478636---------887--44998589637999965999999999998635678998899999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 999998068998999999986225995889999999999999987000-9679999999999986876665198548999
Q 004561 445 HFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADA-RPELLDYLKQFFISLFQNSAEKLGWDSKPGE 523 (745)
Q Consensus 445 ~~~la~~g~l~~~~~l~l~~~l~~e~~~~~w~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~ 523 (745)
+|+||++|.++|+.+|++++||++|++|+||.++++.|.++.+++... .++.++.|+.|+++++.|+|+++||+ +++
T Consensus 666 ~~~la~~g~~~~~~~l~l~~~l~~E~~~~~w~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~--~~~ 743 (967)
T 3se6_A 666 VFQLVGAGRLTLDKALDMTYYLQHETSSPALLEGLSYLESFYHMMDRRNISDISENLKRYLLQYFKPVIDRQSWS--DKG 743 (967)
T ss_dssp HHHHHHTTSSCHHHHHHHTTGGGTCCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHTTHHHHHHCCSS--CCS
T ss_pred HHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC--CCC
T ss_conf 999997589889999999997557984799999999999999997446873889999999999989999974988--998
Q ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHEECCCCCCHHHHHHHHHHHHCCCCH
Q ss_conf 98889999999999997399888999999999963289999999012457652200014469988999999999809999
Q 004561 524 SHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLS 603 (745)
Q Consensus 524 ~~~~~~lr~~il~~ac~~~~~~c~~~a~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~ 603 (745)
++.+..+|..++.+||.+|+++|+++|+++|++|++++..+.||||+|.+|||++++ ++++|+++|++|++++++
T Consensus 744 ~~~~~~lR~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~Vyc~~~~-----~~~~~~~l~~~y~~s~~~ 818 (967)
T 3se6_A 744 SVWDRMLRSALLKLACDLNHAPCIQKAAELFSQWMESSGKLNIPTDVLKIVYSVGAQ-----TTAGWNYLLEQYELSMSS 818 (967)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHHHTT-----SHHHHHHHHHHHHHCSCH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC-----CHHHHHHHHHHHHCCCCH
T ss_conf 578999999999999867998999999999998524887666885566574765444-----599999999998606999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHCC-CCCCCCCHHEEE-ECCC--CHHHHHHHHHHHHHHHHHHHCCC-CCHHHHH
Q ss_conf 99999999807999899999999986059-688643100001-3233--38999999999699999992998-4266899
Q 004561 604 QEKTRILSSLASCPDVNIVLEVLNFLLSS-EVRSQDAVYGLA-VSIE--GRETAWKWLKDNWDHISKTWGSG-FLITRFI 678 (745)
Q Consensus 604 ~er~~il~aLact~d~~ll~~~L~~~l~~-~i~~qd~~~~~~-~~~~--~~~~~~~f~~~n~~~i~~~~~~~-~~~~~~i 678 (745)
+||..++.||||++|+++++++|++++++ .|+.||...+|. ++.| |++++|+|+++||+.|.++++.+ +.++.+|
T Consensus 819 ~ek~~ll~aL~ct~d~~ll~~~L~~~l~~~~i~~qd~~~~~~~v~~n~~g~~~~w~f~~~nw~~i~~~~~~~~~~~~~~i 898 (967)
T 3se6_A 819 AEQNKILYALSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMII 898 (967)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHCSSSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99999999856799999999999997374767576799999999729357999999999999999998578844799999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf 98312589999899999987519986-2789999999999999999998249248999999721058
Q 004561 679 SSIVSPFASYEKVREVEEFFSSRCKP-YIARTLRQSIERVQINAKWVESIRNEGHLAEAVKELAYRK 744 (745)
Q Consensus 679 ~~~~~~~~t~~~l~~~~~f~~~~~~~-~~~~~~~~~~e~i~~ni~W~~~~~~~~~i~~wl~~~~~~~ 744 (745)
..+++.|+|+++++++++||+.++.. ...+++++++|+|+.|++|++++.+. |.+||+.+++|.
T Consensus 899 ~~~~~~~~t~~~l~~~~~f~~~~~~~~~~~~~~~q~le~i~~ni~W~~~~~~~--i~~wl~~~~~~~ 963 (967)
T 3se6_A 899 SGTTAHFSSKDKLQEVKLFFESLEAQGSHLDIFQTVLETITKNIKWLEKNLPT--LRTWLMVNTRHH 963 (967)
T ss_dssp HTTTTTCCSHHHHHHHHHHHHHSCSSSCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCC-
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHCCCCC
T ss_conf 99986269999999999999758765516789999999999999999977789--999997453012
No 2
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=1.00 E-value=1 Score=1181.72 Aligned_cols=722 Identities=33% Similarity=0.579 Sum_probs=650.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEECCCCCCEE----ECCCEEEEEEEECCCCCCCEEEEEEECCEE
Q ss_conf 6798478781123267799830889999967997598277654203----449949999980688876278999971028
Q 004561 4 FKGQPPDARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEK----VDGNMKTVSYQESPIMSTYLVAVVIGLFDY 79 (745)
Q Consensus 4 ~~~ep~~Ar~~fPc~Dep~~ka~f~l~i~~p~~~~~~sn~~~~~~~----~~~~~~~~~f~~t~~~~~y~~a~~vg~f~~ 79 (745)
-||||++||+||||||||++||+|+++|++|++++++|||++.++. .++++++++|+.+||||+|++||++|+|..
T Consensus 144 Tqfep~~AR~~FPc~DeP~~KAtf~i~i~~p~~~~alSN~~~~~~~~~~~~~~~~~~~~f~~t~pmstYL~a~~vg~f~~ 223 (909)
T 4fke_A 144 TQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGSSTPLAEDPNWSVTEFETTPVMSTYLLAYIVSEFQS 223 (909)
T ss_dssp EECTTTTGGGTSCBCCSTTSCBEEEEEEEEETTSEEEESSCBSSSCEECTTCTTEEEEEBCCCCSBCGGGCCEEEESCEE
T ss_pred ECCCCCCCCEEEEECCCCCCCEEEEEEEEECCCCEEECCCCCCCCCCCEECCCCEEEEEEECCCCCCCEEEEEEECCEEE
T ss_conf 81754571789985783366138999999899998983796126611000279859999965887442436878500678
Q ss_pred EEEEECCCEEEEEEECCCCCC--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 871105983799997188400--399999999999999999828999997667144389998521235520110352133
Q 004561 80 VEDHTSDGIKVRVYCQVGKAN--QGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLY 157 (745)
Q Consensus 80 ~~~~~~~g~~i~v~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~yP~~k~~~v~~P~~~~g~me~~gli~~~e~~ll~ 157 (745)
++..+.+|+++++|++|+... .++++++.+.+++++|+++||+|||++|+|+|++|+|..|||||||+++|++..+++
T Consensus 224 ~~~~~~~g~~~~v~~~p~~~~~~~~~~al~~~~~~l~~~e~~~~~~Yp~~k~d~v~vpdf~~gaMEn~glit~~e~~ll~ 303 (909)
T 4fke_A 224 VNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNFFANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENALLF 303 (909)
T ss_dssp EEEECTTSCEEEEEECHHHHHTTTTHHHHHHHHHHHHHHHHHTTSCCSSSEEEEEEETTCTTCEECCTTEEEEEHHHHCC
T ss_pred EEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEC
T ss_conf 86215899379999964604566689999999999999997506788887556899568887652157544203652511
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHHCC
Q ss_conf 68888188899999999999999874064135655245897879999999998521811378999999989-88521023
Q 004561 158 DDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGL 236 (745)
Q Consensus 158 ~~~~~~~~~~~~~~~~iaHEiaHqWfG~~vt~~~w~~~Wl~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~ 236 (745)
+++.++...++.++.+||||+|||||||+||++||+|+|||||||+|++++++++.+|++..+..|..... .++..|+.
T Consensus 304 d~~~s~~~~~~~~~~viaHElAHqWFGnlVT~~~W~dlWLnEGFAty~e~~~~~~~~~~~~~~~~f~~~~~~~~~~~d~~ 383 (909)
T 4fke_A 304 DPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTWNLKDLIVPGDVYRVMAVDAL 383 (909)
T ss_dssp CTTTCCHHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHSTTSCGGGGHHHHTHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 76667747777999999999876551675030666762014378999999998711620017776533689999987643
Q ss_pred CCCCCEEEE---CCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC--
Q ss_conf 899983652---499201200155223233208999999854899999999999986136999978999999961199--
Q 004561 237 AESHPIEVE---VNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGE-- 311 (745)
Q Consensus 237 ~~~~p~~~~---~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~iG~e~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~~~~-- 311 (745)
.+++|+..+ +.++.+++..|+.++|.||++|||||+..+|++.|++||+.|+++|+|++++++|||+++++++|.
T Consensus 384 ~~~~pi~~~~~~v~~~~~i~~~fd~i~Y~KGa~vL~mL~~~lG~e~F~~gl~~Yl~~~~~~na~~~Dl~~~l~~~s~~~~ 463 (909)
T 4fke_A 384 ASSHPLTTPAEEVNTPAQISEMFDSISYSKGASVIRMLSNFLTEDLFKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQT 463 (909)
T ss_dssp TTCCCSCCCGGGCCSHHHHHTTSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTEEECHHHHHHHHHHHHHTCS
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 24677556644568856687631158878799999999998677999999999998614358988999999999857154
Q ss_pred ------CHHHHHHHHHCCCCCCEEEEEEECCEEEEEEEEECCCCCC-------CCCEEEEEEEEEECCCCCEEEEEEEC-
Q ss_conf ------7899998843388953499997188899999831279999-------99803898999985466111177416-
Q 004561 312 ------PVNKLMNSWTKQKGYPVISVKVKEEKLELEQSQFLSSGSP-------GDGQWIVPITLCCGSYDVCKNFLLYN- 377 (745)
Q Consensus 312 ------~~~~~~~~W~~q~G~P~i~v~~~~~~i~i~Q~rf~~~~~~-------~~~~w~iPl~~~~~~~~~~~~~~l~~- 377 (745)
++..+|++|++|+|||+++|++..+. ++|+||+..... ....|+|||++++..... ...++..
T Consensus 464 ~~~~~~~v~~~~~~W~~q~G~Pvv~V~~~~~~--~~q~~~~~~~~~~~~~~~~~~~~w~IPl~~~~~~~~~-~~~~~~~~ 540 (909)
T 4fke_A 464 SIRLPDTVRAIMDRWTLQMGFPVITVDTKTGN--ISQKHFLLDSESNVTRSSAFDYLWIVPISSIKNGVMQ-DHYWLRDV 540 (909)
T ss_dssp SCCCSSCHHHHHHHHHSSCSCEEEEEETTTTE--EEEEECCSCTTCCCCSCCTTTTCCCEEECEEETTEEC-CCEEECSC
T ss_pred CCCCCHHHHHHHHCCCCCCCCCEEEEEECCCC--EEEEEEEECCCCCCCCCCCCCCEEEEEEEEEECCCCC-CEEEEECC
T ss_conf 66642567727517053589727999960571--7999999626788887777784599999998579766-26986215
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCEEECCCCEEEEEEECCHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 610898136534445678998870573679702599975988899999999813--999241898999999999806899
Q 004561 378 KSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIEMK--QLSETDRFGILDDHFALCMARQQT 455 (745)
Q Consensus 378 ~~~~~~l~~~~~~~~~~~~~~~~~i~~N~~~~gyyrv~Yd~~~~~~l~~~l~~~--~i~~~~r~~li~D~~~la~~g~l~ 455 (745)
......+.. ..++ +||++|.++.|||||+||+.+|.+|+.+|..+ .|++.+|+|||+|+|+||++|.++
T Consensus 541 ~~~~~~~~~-------~~~~--~wi~~N~~~~gyyRV~Yd~~~w~~l~~~L~~~~~~i~~~~Ra~li~D~~~la~ag~~~ 611 (909)
T 4fke_A 541 SQAQNDLFK-------TASD--DWVLLNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVIPVINRAQVIYDSFNLATAHMVP 611 (909)
T ss_dssp SEEECGGGC-------CCTT--CCEEESGGGCSSCEEEECHHHHHHHHHHHHHCGGGSCHHHHHHHHHHHHHHHHTTSSC
T ss_pred CCCEEEECC-------CCCC--CEEEECCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 653156446-------7878--7499779952899980688889999999874865499989999999999999859988
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC----CCCCHHHHHHH
Q ss_conf 89999999862259958899999999999999870009679999999999986876665198548----99998889999
Q 004561 456 LTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLGWDSK----PGESHLDALLR 531 (745)
Q Consensus 456 ~~~~l~l~~~l~~e~~~~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~~~----~~~~~~~~~lr 531 (745)
|+.+|+++.||++|++|+||.++++.|..+..++.+ ++.++.|+.|++++++|+|+++|+... .++++.+..+|
T Consensus 612 ~~~~l~l~~~l~~E~~y~~w~~~~~~l~~l~~~~~~--~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lr 689 (909)
T 4fke_A 612 VTLALDNTLFLNGEKEYMPWQAALSSLSYFSLMFDR--SEVYGPMKKYLRKQVEPLFQHFETLTKNWTERPENLMDQYSE 689 (909)
T ss_dssp HHHHHHTTGGGGGCCSHHHHHHHHHHHHHHHHHHTT--STTHHHHHHHHHHHHHHHHHHHHHHTTTTTSCCSSHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 999999999870686178999999999999998669--567899999999999999998643303664233438999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 99999999739988899999999996328999999901245765220001446998899999999980999999999999
Q 004561 532 GEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILS 611 (745)
Q Consensus 532 ~~il~~ac~~~~~~c~~~a~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~er~~il~ 611 (745)
..++.+||.+|+++|+++|+++|++|+.+++.+.||||+|.+|||++++ +|++++|+++|++|+++++.+||..++.
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~---~g~~~~~~~l~~~~~~~~~~~ek~~ll~ 766 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIA---QGGQDQWDFAWGQLQQAQLVNEADKLRS 766 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHH---HSCHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH---HCCHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9999999872469999999999999962877786898999999999998---6799999999999870699999999999
Q ss_pred HHCCCCCHHHHHHHHHHHHCC-CCCCCCCHHEEE-ECCC--CHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHCCCC
Q ss_conf 807999899999999986059-688643100001-3233--38999999999699999992998-426689998312589
Q 004561 612 SLASCPDVNIVLEVLNFLLSS-EVRSQDAVYGLA-VSIE--GRETAWKWLKDNWDHISKTWGSG-FLITRFISSIVSPFA 686 (745)
Q Consensus 612 aLact~d~~ll~~~L~~~l~~-~i~~qd~~~~~~-~~~~--~~~~~~~f~~~n~~~i~~~~~~~-~~~~~~i~~~~~~~~ 686 (745)
||||++|+++++++|++++++ .|+.||...+|. ++.| |++++|+|+++||+.|.++++++ +.++.+|..+++.++
T Consensus 767 aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~~ 846 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFS 846 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTCTTTSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTCC
T ss_pred HHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 71789999999999999748787745259999999962967799999999999999999847996279999999987169
Q ss_pred CHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf 999899999987519986---2789999999999999999998249248999999721058
Q 004561 687 SYEKVREVEEFFSSRCKP---YIARTLRQSIERVQINAKWVESIRNEGHLAEAVKELAYRK 744 (745)
Q Consensus 687 t~~~l~~~~~f~~~~~~~---~~~~~~~~~~e~i~~ni~W~~~~~~~~~i~~wl~~~~~~~ 744 (745)
|+++++++++||+.++.. ...+++++++|+|+.|++|++++.+. |.+||++|..|.
T Consensus 847 t~~~~~~~~~f~~~~~~~~~~~~~~~~~~~le~i~~n~~w~~~~~~~--i~~wL~~n~s~~ 905 (909)
T 4fke_A 847 SEFELQQLEQFKKNNMDVGFGSGTRALEQALEKTKANIKWVKENKEV--VLNWFIEHSSHH 905 (909)
T ss_dssp SHHHHHHHHHHHTTCSSSCCGGGTTHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC--
T ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHH--HHHHHHHCCCCC
T ss_conf 99999999999864876565438899999999999999999868789--999999657455
No 3
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=1.00 E-value=1 Score=1178.45 Aligned_cols=717 Identities=32% Similarity=0.590 Sum_probs=658.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEECCCCCCEE-ECCCEEEEEEEECCCCCCCEEEEEEECCEEEEE
Q ss_conf 6798478781123267799830889999967997598277654203-449949999980688876278999971028871
Q 004561 4 FKGQPPDARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVED 82 (745)
Q Consensus 4 ~~~ep~~Ar~~fPc~Dep~~ka~f~l~i~~p~~~~~~sn~~~~~~~-~~~~~~~~~f~~t~~~~~y~~a~~vg~f~~~~~ 82 (745)
-||||.+||+||||||||++||+|+++|++|++|+++|||++.++. ..+++++++|+.+||||+|++||++|+|+.++.
T Consensus 135 Tq~ep~~AR~~fPc~DeP~~Katf~itI~~p~~~~alSN~~~~~~~~~~~g~~~~~f~~t~pmstYL~a~~vg~f~~~~~ 214 (897)
T 2xdt_A 135 TQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAEGLIEDHFDVTVKMSTYLVAFIISDFESVSK 214 (897)
T ss_dssp EECTTTTHHHHSCBCCSTTSCBEEEEEEEECTTCEEEESSCEEEEEEEETTEEEEEECCCCSBCGGGCCEEEECCEEEEE
T ss_pred ECCEECCCCEEEECCCCCCCCCEEEEEEEECCCCEEECCCCCCCEEECCCCEEEEEEECCCCCCHHHEEEEEECCEEECC
T ss_conf 54430664268763698010275999999769866752787330476379879999957776553523789875566213
Q ss_pred EECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 10598379999718840039999999999999999982899999766714438999852123552011035213368888
Q 004561 83 HTSDGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHS 162 (745)
Q Consensus 83 ~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yP~~k~~~v~~P~~~~g~me~~gli~~~e~~ll~~~~~~ 162 (745)
.+.+|+++++|++|+..++++++++.+.+++++|+++||+|||++|+|+|++|+|..|||||||+++|+|..+++++..+
T Consensus 215 ~~~~gv~v~v~~~~~~~~~~~~al~~~~~~l~~~e~~fg~~YP~~k~d~v~vpdf~~GaMEn~glit~~e~~ll~~~~~~ 294 (897)
T 2xdt_A 215 ITKSGVKVSVYAVPDKINQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESALLFDAEKS 294 (897)
T ss_dssp ECTTCCEEEEEECTTTGGGCHHHHHHHHHHHHHHHHHTTCCCCSSEEEEEEESSCSSSEECCTTEEEEEGGGTCCCTTTC
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHCCCEEEEEEEEEEECCCCC
T ss_conf 46798069998277707789999999999999999985899776533599968886661213774687420276777777
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 18889999999999999987406413565524589787999999999852181137899999998988521023899983
Q 004561 163 AAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPI 242 (745)
Q Consensus 163 ~~~~~~~~~~~iaHEiaHqWfG~~vt~~~w~~~Wl~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~ 242 (745)
+...++.+..+|+||+|||||||+|||+||+|+|||||||+|++++++++.+|++..+..|......++..|+..++||+
T Consensus 295 ~~~~~~~~~~viaHElAHqWFGnlVT~~~W~dlWLnEGfAty~e~~~~~~~~~~~~~~~~f~~~~~~a~~~D~~~~~~Pi 374 (897)
T 2xdt_A 295 SASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYFFGKCFDAMEVDALNSSHPV 374 (897)
T ss_dssp CHHHHHHHHHHHHHHHHTTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHHCGGGCGGGGHHHHHHHHHHHHTSTTCCCS
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 18889999999999999987287714487411133178999999999998688315999999999999975032378997
Q ss_pred EEECCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--------------
Q ss_conf 652499201200155223233208999999854899999999999986136999978999999961--------------
Q 004561 243 EVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEG-------------- 308 (745)
Q Consensus 243 ~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~iG~e~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~-------------- 308 (745)
..++.++.++...|+.++|.||++|++||+..+|++.|+++|+.|+++|+|++++++|||++++++
T Consensus 375 ~~~v~~p~~i~~~fd~i~Y~KGa~vl~mL~~~lG~e~F~~gl~~Yl~~~~~~~a~~~Dl~~~l~~~~~~~~~~~~~~~~~ 454 (897)
T 2xdt_A 375 STPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMASICPTDGVKGMDGFCS 454 (897)
T ss_dssp SCCCCSHHHHHHTSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTEEECHHHHHHHHHTC--------------
T ss_pred EEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 77379978988744315404699999999997588999999999999843289989999999998763035542222343
Q ss_pred -----C--------CCCHHHHHHHHHCCCCCCEEEEEEECCEEEEEEEEECCCCCC---CCCEEEEEEEEEECCCCCEEE
Q ss_conf -----1--------997899998843388953499997188899999831279999---998038989999854661111
Q 004561 309 -----S--------GEPVNKLMNSWTKQKGYPVISVKVKEEKLELEQSQFLSSGSP---GDGQWIVPITLCCGSYDVCKN 372 (745)
Q Consensus 309 -----~--------~~~~~~~~~~W~~q~G~P~i~v~~~~~~i~i~Q~rf~~~~~~---~~~~w~iPl~~~~~~~~~~~~ 372 (745)
+ |.++++||++|++|+|||+++|++++++++|+|+||..++.. ....|+|||++.++..+....
T Consensus 455 ~~~~~s~~~~~~~~g~dl~~~~~~W~~q~G~P~l~v~~~~~~~~l~Q~~f~~~~~~~~~~~~~w~iPi~~~~~~~~~~~~ 534 (897)
T 2xdt_A 455 RSQHSSSSSHWHQEGVDVKTMMNTWTLQKGFPLITITVRGRNVHMKQEHYMKGSDGAPDTGYLWHVPLTFITSKSDMVHR 534 (897)
T ss_dssp --------------CCCHHHHHHHHHSSCSEEEEEEEEETTEEEEEEEEECCC-----CCCCCCCEEEEEEESSCSSCEE
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCCCCCE
T ss_conf 21135532123557988999998865579952899997498899999985168988877882699978999279996441
Q ss_pred EEEECCCEEEEECCCCCCCCCCCCCCCCCEEECCCCEEEEEEECCHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHH
Q ss_conf 7741661089813653444567899887057367970259997598889999999981--39992418989999999998
Q 004561 373 FLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIEM--KQLSETDRFGILDDHFALCM 450 (745)
Q Consensus 373 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~~i~~N~~~~gyyrv~Yd~~~~~~l~~~l~~--~~i~~~~r~~li~D~~~la~ 450 (745)
.|+..++..+.++ .++ +||++|+++.|||||+||+.+|..|..+|.. ..|++.+|+|||+|+|+||+
T Consensus 535 ~~l~~~~~~~~~~---------~~~--~~i~~N~~~~gyyrV~Yd~~~w~~l~~~L~~~~~~i~~~~Ra~li~D~~~la~ 603 (897)
T 2xdt_A 535 FLLKTKTDVLILP---------EEV--EWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQLVS 603 (897)
T ss_dssp EEECSSEEEEECS---------SCC--SCEEESGGGCSSCEEEECTTHHHHHHHHHHHCGGGSCHHHHHHHHHHHHHHHT
T ss_pred EEECCCCEEEECC---------CCC--CEEEECCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 8965884689805---------888--35997798469999976887899999998737566998899999999999998
Q ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHH---HHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf 06899899999998622599588999999999999998700096799---999999999868766651985489999888
Q 004561 451 ARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELL---DYLKQFFISLFQNSAEKLGWDSKPGESHLD 527 (745)
Q Consensus 451 ~g~l~~~~~l~l~~~l~~e~~~~~w~~~~~~l~~l~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~ 527 (745)
+|.++|+.+|++++||++|++|+||.++++.|.++.+++.+. +.+ ..|+.|+++++.|+|+++||+. ++++.+
T Consensus 604 ~g~~~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~lg~~~--~~~~~~ 679 (897)
T 2xdt_A 604 IGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPMYKLMEKR--DMNEVETQFKAFLIRLLRDLIDKQTWTD--EGSVSE 679 (897)
T ss_dssp TTSSCHHHHHHHHGGGGGCCCHHHHHHHHHHHHHHHHHHHTS--SCHHHHHHHHHHHHHHHHHHHHTCCSSC--CSCHHH
T ss_pred CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCHHH
T ss_conf 699878999999887437986899999999999999984597--0345789999999999999999829878--987789
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHEECCCCCCHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 99999999999973998889999999999632899999990124576522000144699889999999998099999999
Q 004561 528 ALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKT 607 (745)
Q Consensus 528 ~~lr~~il~~ac~~~~~~c~~~a~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~er~ 607 (745)
..+|..++.+||.+|+++|+++|+++|++|+.++..+.||||+|.+|||+++ |++++|+++|++|+++++++||.
T Consensus 680 ~~lr~~~~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~~lr~~vy~~~~-----g~~~~~~~l~~~y~~~~~~~ek~ 754 (897)
T 2xdt_A 680 RMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGA-----QSTEGWDFLYSKYQFSLSSTEKS 754 (897)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHHHT-----TSHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHEEEEEC-----CCHHHHHHHHHHHHCCCCHHHHH
T ss_conf 9999999999986698999999999999985388767788303643888860-----89999999999997159989999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHCC-CCCCCCCHHEEE-ECCC--CHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHH
Q ss_conf 9999807999899999999986059-688643100001-3233--38999999999699999992998-42668999831
Q 004561 608 RILSSLASCPDVNIVLEVLNFLLSS-EVRSQDAVYGLA-VSIE--GRETAWKWLKDNWDHISKTWGSG-FLITRFISSIV 682 (745)
Q Consensus 608 ~il~aLact~d~~ll~~~L~~~l~~-~i~~qd~~~~~~-~~~~--~~~~~~~f~~~n~~~i~~~~~~~-~~~~~~i~~~~ 682 (745)
.+|.||||++|+++++++|++++++ .|+.||...+|. ++.| |++++|+|+++||+.|.++++++ +.++.+|..++
T Consensus 755 ~ll~aL~c~~~~~~l~~~L~~~~~~~~i~~qd~~~~~~~v~~n~~g~~~~~~~~~~n~~~i~~~~~~~~~~~~~~i~~~~ 834 (897)
T 2xdt_A 755 QIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTT 834 (897)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHCSSSCGGGHHHHHHHHHTSTTTHHHHHHHHHHTHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99998646999999999999984889886888999999987194669999999999999999984899437999999987
Q ss_pred CCCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf 258999989999998751998-627899999999999999999982492489999997210
Q 004561 683 SPFASYEKVREVEEFFSSRCK-PYIARTLRQSIERVQINAKWVESIRNEGHLAEAVKELAY 742 (745)
Q Consensus 683 ~~~~t~~~l~~~~~f~~~~~~-~~~~~~~~~~~e~i~~ni~W~~~~~~~~~i~~wl~~~~~ 742 (745)
+.++|+++++++++||+.++. ++..+++.+++|.|+.|++|++++.+. |.+||+++..
T Consensus 835 ~~~~t~~~~~~~~~f~~~~~~~~~~~~~~~~~le~i~~n~~w~~~~~~~--i~~wl~~~~~ 893 (897)
T 2xdt_A 835 NQFSTRTRLEEVKGFFSSLKENGSQLRCVQQTIETIEENIGWMDKNFDK--IRVWLQSEKL 893 (897)
T ss_dssp TTCCSHHHHHHHHHHHHHTGGGTTTCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHTTT
T ss_pred HCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHH--HHHHHHHHHH
T ss_conf 5249999999999999757765506789999999999999999867789--9999985213
No 4
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=1.00 E-value=1 Score=1081.81 Aligned_cols=676 Identities=32% Similarity=0.577 Sum_probs=617.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEECCCCCCEEECCCEEEEEEEECCCCCCCEEEEEEECCEEEEEE
Q ss_conf 67984787811232677998308899999679975982776542034499499999806888762789999710288711
Q 004561 4 FKGQPPDARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDH 83 (745)
Q Consensus 4 ~~~ep~~Ar~~fPc~Dep~~ka~f~l~i~~p~~~~~~sn~~~~~~~~~~~~~~~~f~~t~~~~~y~~a~~vg~f~~~~~~ 83 (745)
.||||.+||+||||||||.+||+|+++|++|++|+++|||++.++ ..+++++++|..+||||+|++||++|+|+.++..
T Consensus 98 Tq~ep~~AR~~fPc~DeP~~Katf~iti~~p~~~~~lSN~~~~~~-~~~g~~~~~f~~t~~mstYL~a~~vg~f~~~~~~ 176 (780)
T 1z5h_A 98 THFEATDARRMFPCVDHPAYKAVFAITVVIDKDYDAISNMPPKRI-EVSERKVVEFQDTPRMSTYLLYVGIGKFRYEYEK 176 (780)
T ss_dssp EECTTTCGGGTSCBCCCTTSCBEEEEEEEECTTCEEEESSCEEEE-EESSSEEEEECCCCSBCGGGCCEEEECCEEEEEE
T ss_pred ECCCCCCHHHEEECCCCCCCCCEEEEEEEECCCCEEEECCCCCCC-CCCCCEEEEEECCCCCCCEEEEEEEECCEEEEEC
T ss_conf 746667852424557874653179999997798779847863430-3798059999457765421799999622787403
Q ss_pred ECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 05983799997188400399999999999999999828999997667144389998521235520110352133688881
Q 004561 84 TSDGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSA 163 (745)
Q Consensus 84 ~~~g~~i~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yP~~k~~~v~~P~~~~g~me~~gli~~~e~~ll~~~~~~~ 163 (745)
.. |+++++|++|+ .+++++++.+.+++++|+++||+|||++|+|+|++|+|..|||||||+++|++..++++ +.++
T Consensus 177 ~~-gv~~~v~~~~~--~~~~~al~~~~~~l~~~e~~fg~~YP~~k~d~v~vpdf~~GaMEn~glit~~e~~ll~~-~~~~ 252 (780)
T 1z5h_A 177 YR-DIDLILASLKD--IRSKYPLDMARKSVEFYENYFGIPYALPKMHLISVPEFGAGAMENWGAITFREIYMDIA-ENSA 252 (780)
T ss_dssp ET-TEEEEEEESSC--CCCSHHHHHHHHHHHHHHHHHSSCCSSSEEEEEEETTCTTCEECCTTEEEEEHHHHSCC-TTSC
T ss_pred CC-CEEEEEEECCC--HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCEEEEC-CCCC
T ss_conf 58-76689997255--52799999999999999998399887766777985798887511167558600327626-8998
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHHCCCCCCCE
Q ss_conf 88899999999999999874064135655245897879999999998521811378999999989-88521023899983
Q 004561 164 AANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPI 242 (745)
Q Consensus 164 ~~~~~~~~~~iaHEiaHqWfG~~vt~~~w~~~Wl~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~p~ 242 (745)
...++.+..+|+||+|||||||+|||+||+++|||||||+|++++++++.+|++..+..|..... .++..|+..++||+
T Consensus 253 ~~~~~~~~~viaHElaHqWfGnlVT~~~W~dlWLnEGfA~y~~~~~~~~~~~~~~~~~~f~~~~~~~al~~D~~~~~~pi 332 (780)
T 1z5h_A 253 VTVKRNSANVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTLFPEWSFWGDFFVSRTSGALRSDSLKNTHPI 332 (780)
T ss_dssp HHHHHHHHHHHHHHHHHTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHTHHHHHHHTTSTTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 89999999999999999985875135883325144799999999988875772138899998899999997511478981
Q ss_pred EEECCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf 65249920120015522323320899999985489999999999998613699997899999996119978999988433
Q 004561 243 EVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTK 322 (745)
Q Consensus 243 ~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~iG~e~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~~~~~~~~~~~~W~~ 322 (745)
..++.++.+++..|+.++|.||++|++||+..+|++.|+++|+.|+++|+|++++++|||+++++++|.++.+||++|++
T Consensus 333 ~~~v~~~~~~~~~fd~i~Y~KGa~vl~mL~~~lG~e~F~~~l~~yl~~~~~~~~t~~Dl~~~l~~~sg~dl~~~~~~W~~ 412 (780)
T 1z5h_A 333 EVDVRDPDEISQIFDEISYGKGASILRMIEDYAGYEEFRKGISKYLNDHKFGNAEGSDLWTAIEDVSGKPVKRVMEYWIK 412 (780)
T ss_dssp CCCCCSSCCTTTTSCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTEEECHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred EECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 11589978998755415526589999999998698999999999999845599888999999998709999999999970
Q ss_pred CCCCCEEEEEEECCEEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCE
Q ss_conf 88953499997188899999831279999998038989999854661111774166108981365344456789988705
Q 004561 323 QKGYPVISVKVKEEKLELEQSQFLSSGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWI 402 (745)
Q Consensus 323 q~G~P~i~v~~~~~~i~i~Q~rf~~~~~~~~~~w~iPl~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~i 402 (745)
|+|+|+++|++++++++|+|+||..++ .+...|+|||++ +.++. .... +..+ ++.++. . +||
T Consensus 413 ~~G~P~l~v~~~~~~~~l~Q~~f~~~~-~~~~~w~iPi~~-~~~~~-~~~~-l~~~--~~~~~~----------~--~~i 474 (780)
T 1z5h_A 413 NPGYPVIKLKRNGRKITMYQTRFLLNG-EEEGRWPVPVNI-KKKDG-VERI-LLED--EASIEA----------D--GLI 474 (780)
T ss_dssp SCSCEEEEEEESSSEEEEEEEECCSSC-CEECCCCEEEEE-EETTE-EEEE-EECS--SEEEEC----------T--TEE
T ss_pred CCCCCEEEEEECCCEEEEEEEEECCCC-CCCCEEEEEEEE-CCCCC-EEEE-CCCC--EEECCC----------C--CEE
T ss_conf 899854999953767999999715799-888558998897-58996-3341-0575--697268----------7--638
Q ss_pred EECCCCEEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 73679702599975988899999999813999241898999999999806899899999998622599588999999999
Q 004561 403 KLNVNQTGFYRVKYDKDLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITIS 482 (745)
Q Consensus 403 ~~N~~~~gyyrv~Yd~~~~~~l~~~l~~~~i~~~~r~~li~D~~~la~~g~l~~~~~l~l~~~l~~e~~~~~w~~~~~~l 482 (745)
++|.++.|||||+||+.+|..|...| ..|++.+|+|||+|+|+|+++|.++|+.+|++++||++|++|.||.++++.+
T Consensus 475 ~~N~~~~gyyrv~Yd~~~~~~l~~~l--~~i~~~~Ra~li~D~~~l~~~g~~~~~~~l~l~~~l~~E~~~~~w~~~~~~l 552 (780)
T 1z5h_A 475 KINADSAGFYRVLYDDATFSDVMGHY--RDLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDEDHNVITAIVGQM 552 (780)
T ss_dssp EESGGGCSSSEEECCHHHHHHHHHTG--GGCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHGGGTTCCCHHHHHHHHHHH
T ss_pred EEECCCCEEEEEECCHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99689877999978999999999876--4599999999999999999849999999999999856599689999999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999870009679999999999986876665198548999988899999999999973998889999999999632899
Q 004561 483 YKIGRIAADARPELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRT 562 (745)
Q Consensus 483 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~~~~~c~~~a~~~f~~~~~~~~ 562 (745)
..+.++ . +.|+.|+++++.++++++| . . +++.+..+|..++.+||.+|+++|++ |+++|++|
T Consensus 553 ~~~~~~--~------~~~~~~~~~l~~~~~~~l~--~-~-~~~~~~~~r~~~~~~a~~~~~~~~~~-a~~~f~~~----- 614 (780)
T 1z5h_A 553 EYLRML--T------HAFDDDARAFCRSRMQFLT--G-K-QDENLKIALGRVSRLYVMVDESYAEE-MSKLFKDF----- 614 (780)
T ss_dssp HHHHTT--C------STTHHHHHHHHHHHHHHHT--T-C-CCHHHHHHHHHHHHHHHHHCHHHHHH-HHTTGGGG-----
T ss_pred HHHHHC--H------HHHHHHHHHHHHHHHHHCC--C-C-CCHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHC-----
T ss_conf 999856--2------9999999999999999818--7-8-98678999999999998569999999-99998745-----
Q ss_pred CCCCCCHHHHHHHHHHEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHE
Q ss_conf 99999012457652200014469988999999999809999999999998079998999999999860596886431000
Q 004561 563 TPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSEVRSQDAVYG 642 (745)
Q Consensus 563 ~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~er~~il~aLact~d~~ll~~~L~~~l~~~i~~qd~~~~ 642 (745)
+.||||+|.+|||++++ +|++ |++++++|+++++++||..++.||||++|+++++++|++++++.++.||...+
T Consensus 615 -~~i~~~lr~~v~~~~~~---~g~~--~~~l~~~~~~~~~~~~~~~~l~al~~~~~~~~~~~~l~~~~~~~i~~qd~~~~ 688 (780)
T 1z5h_A 615 -DSAEPEMRSSIATAYAL---VTGD--LKGLLEKFRSVDRDEDRVRIISAFGKLKSNTDLSTVYGMVEKTEIKKQDMISF 688 (780)
T ss_dssp -GGSCHHHHHHHHHHHHH---HTCC--HHHHHHHHHSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHH---CCCH--HHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf -78997899999999997---3959--99999998647999999999997016999999999999986489878999999
Q ss_pred EE-ECCC--CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 01-3233--38999999999699999992998426689998312589999899999987519986278999999999999
Q 004561 643 LA-VSIE--GRETAWKWLKDNWDHISKTWGSGFLITRFISSIVSPFASYEKVREVEEFFSSRCKPYIARTLRQSIERVQI 719 (745)
Q Consensus 643 ~~-~~~~--~~~~~~~f~~~n~~~i~~~~~~~~~~~~~i~~~~~~~~t~~~l~~~~~f~~~~~~~~~~~~~~~~~e~i~~ 719 (745)
+. ++.+ |++++|+|+++||+.|.+++++.+.+..+|..+ +.++|++ ++++++||+.++.++..+++.+++|+|+.
T Consensus 689 ~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~~~~~~~~i~~~-~~~~t~~-~~~~~~f~~~~~~~~~~~~~~~~~e~i~~ 766 (780)
T 1z5h_A 689 FSSALETLPGREFIFANLDRIIRLVIRYFTGNRTASRTVEMM-IPVIGLD-HPDAEDIVRNIGSKNISMGLAKGIEMLAV 766 (780)
T ss_dssp HHHHTTSHHHHHHHHHTHHHHHHHHHHHHCSSSHHHHHHHHH-HHHHHHH-CTTHHHHHHTTCCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HCCCCHH-HHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 999972942189999999999999999858954699999851-1238889-99999997018886077899999999999
Q ss_pred HHHHHHHHCCH
Q ss_conf 99999982492
Q 004561 720 NAKWVESIRNE 730 (745)
Q Consensus 720 ni~W~~~~~~~ 730 (745)
|++|++++.+.
T Consensus 767 n~~w~~~~~~~ 777 (780)
T 1z5h_A 767 NRKLVERIRQT 777 (780)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHCC
T ss_conf 99999842223
No 5
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis}
Probab=1.00 E-value=1 Score=739.30 Aligned_cols=615 Identities=18% Similarity=0.237 Sum_probs=494.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCC-C-EEEECCCCCCEE-ECCCEEEEEEEECCCCCCCEEEEEEECCEEE
Q ss_conf 679847878112326779983088999996799-7-598277654203-4499499999806888762789999710288
Q 004561 4 FKGQPPDARRCFPCWDEPACKATFKITLDVPSE-L-VALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYV 80 (745)
Q Consensus 4 ~~~ep~~Ar~~fPc~Dep~~ka~f~l~i~~p~~-~-~~~sn~~~~~~~-~~~~~~~~~f~~t~~~~~y~~a~~vg~f~~~ 80 (745)
.||||.+||+||||||+|+.||+|+++|++|++ | +++|||++.++. ..+++++++|+.++|||+|++||++|+|..+
T Consensus 114 Tq~ep~~AR~~fPc~DeP~~katf~itIt~p~~~y~~~lSNg~l~~~~~~~~g~~~~~f~~t~pmstYL~A~~vG~f~~~ 193 (867)
T 2gtq_A 114 TQCEPEGFRKITFYIDRPDVMSKFTTTIVADKKRYPVLLSNGNKIDGGEFSDGRHWVKWEDPFSKPSYLFALVAGDLAVT 193 (867)
T ss_dssp EECTTTTGGGTSCBCCSTTCCBEEEEEEEEETTTCCEEEESSEEEEEEECTTSEEEEEEECCSCBCGGGCCEEEECCEEE
T ss_pred EEECCCCCCEEECCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCEEECCCEEEEEEEECCCCCCCCEEEEEECCEEE
T ss_conf 84426887630056887775258999999745546688867854451461498299999848986652002897323576
Q ss_pred EEE--ECC--CEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 711--059--8379999718840039999999999999999982899999766714438999852123552011035213
Q 004561 81 EDH--TSD--GIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALL 156 (745)
Q Consensus 81 ~~~--~~~--g~~i~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yP~~k~~~v~~P~~~~g~me~~gli~~~e~~ll 156 (745)
+.. +.+ ++++++|++|+..+.++++++.+.+++++|+++||+|||++++++|++|+|..|||||||+++|+++.++
T Consensus 194 ~~~~~t~~g~~v~l~vy~~p~~~~~~~~al~~~~~~l~~~e~~fG~pYP~~k~d~Vavpdf~~GaMEn~glitf~e~~ll 273 (867)
T 2gtq_A 194 EDYFTTMSGRNVKIEFYTTEADKPKVGFAVESLKNAMKWDETRFGLEYDLDIFMVVAVGDFNMGAMENKGLNIFNTKFVL 273 (867)
T ss_dssp EEEEECTTSCEEEEEEEECTTTGGGCHHHHHHHHHHHHHHHHHHCCCCCSSEEEEEEESSCSSSEECCTTEEEEEGGGTC
T ss_pred EECEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCC
T ss_conf 30103368982578997365609999999999999999999972899987624699727888664014774131453023
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHH-HHHHHH
Q ss_conf 36888818889999999999999987406413565524589787999999999852181137-8999999989-885210
Q 004561 157 YDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWK-IWTQFLDECT-EGLRLD 234 (745)
Q Consensus 157 ~~~~~~~~~~~~~~~~~iaHEiaHqWfG~~vt~~~w~~~Wl~EGfa~y~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~d 234 (745)
++++.++...++.+..+|+||+|||||||+||++||+++|||||||+|++..+.....+... .... ..... ..+..|
T Consensus 274 ~~~~~~~~~~~~~i~~vIaHElAHqWfGnlVT~~~W~dlWLnEGfAty~e~~~~~~~~~~~~~~~~~-~~~l~~~~~~~D 352 (867)
T 2gtq_A 274 ADSRTATDTDFEGIESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSGDRASRAVRRIEN-IRLLRQHQFPED 352 (867)
T ss_dssp CCTTTCCHHHHHHHHHHHHHHHHTTTBTTTBEESSGGGHHHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHC
T ss_conf 5833276788889999999999997228588866544341147899999999999970889999999-999998766540
Q ss_pred CCCCCCCEEEECCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHH
Q ss_conf 23899983652499201200155223233208999999854899999999999986136999978999999961199789
Q 004561 235 GLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVN 314 (745)
Q Consensus 235 ~~~~~~p~~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~iG~e~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~~~~~~~ 314 (745)
+...+||+.. .+..+++..|+.++|.||++|++||+..+|++.|+++|+.|+++|+|++++++|||+++++++|.++.
T Consensus 353 ~~~~~~Pi~~--~~~~~i~~~f~~i~Y~KGa~vl~mL~~~lG~e~F~~glr~Yl~~~~~~~~t~~Df~~~l~~~sg~dl~ 430 (867)
T 2gtq_A 353 AGPTAHPVRP--ASYEEMNNFYTMTVYEKGAEVVRMYHTLLGEEGFQKGMKLYFQRHDGQAVTCDDFRAAMADANGINLD 430 (867)
T ss_dssp HSTTCCCSSC--SEESCGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHTCCCG
T ss_pred CCCCCCCCCC--CCHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHH
T ss_conf 4766787767--77224555234235437999999999987899999999999997378999999999999987488989
Q ss_pred HHHHHHHCCCCCCEEEEEEE--CCE--EEEEEEEECCCCCCCCCEEEEEEEEEECCCC--C-----------EEEEEEEC
Q ss_conf 99988433889534999971--888--9999983127999999803898999985466--1-----------11177416
Q 004561 315 KLMNSWTKQKGYPVISVKVK--EEK--LELEQSQFLSSGSPGDGQWIVPITLCCGSYD--V-----------CKNFLLYN 377 (745)
Q Consensus 315 ~~~~~W~~q~G~P~i~v~~~--~~~--i~i~Q~rf~~~~~~~~~~w~iPl~~~~~~~~--~-----------~~~~~l~~ 377 (745)
.| ++|++|+|+|+++|.+. .+. ++|+|+++...+......|+|||++...+.. . ...++++.
T Consensus 431 ~f-~~W~~q~G~P~l~v~~~~~~~~~~l~l~Q~~~~~~~~~~~~~~~iPi~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~ 509 (867)
T 2gtq_A 431 QF-ALWYSQAGTPVLEAEGRLKNNIFELTVKQTVPPTPDMTDKQPMMIPVKVGLLNRNGEAVAFDYQGKRATEAVLLLTE 509 (867)
T ss_dssp GG-GHHHHCCSCCEEEEEEEEETTEEEEEEEEECCCBTTBSCCCCCCEEEEEEEECTTCCBCCEECSSCEESCEEEEECS
T ss_pred HH-HHHHCCCCCCEEEEEEEECCCEEEEEEEEECCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECC
T ss_conf 99-99964899724899998549879999999668999988786179999999974798621343356555543899768
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCEEECCCCEEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHH---HHHHHHH-----H
Q ss_conf 6108981365344456789988705736797025999759888999999998139992418989---9999999-----9
Q 004561 378 KSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQLSETDRFGI---LDDHFAL-----C 449 (745)
Q Consensus 378 ~~~~~~l~~~~~~~~~~~~~~~~~i~~N~~~~gyyrv~Yd~~~~~~l~~~l~~~~i~~~~r~~l---i~D~~~l-----a 449 (745)
+++++.++.+ . .. .|+.+|.+..+++||+|+-..+.. ...+.... ++.+|.+. +.|...+ +
T Consensus 510 ~~~~~~~~~~------~-~~--p~~~l~r~fs~~~~l~~~~~~~~l-~~l~~~~~-d~~~R~~a~~~L~~~~~~~~~~~~ 578 (867)
T 2gtq_A 510 AEQTFLLEGV------T-EA--VVPSLLRGFSAPVHLNYPYSDDDL-LLLLAHDS-DAFTRWEAAQTLYRRAVAANLATL 578 (867)
T ss_dssp SEEEEEEBCC------C-SC--CEEEESTTCCSSCEEECCCCHHHH-HHHHHHCS-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECC------C-CC--CCEEECCCCCCCEEEECCCCHHHH-HHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8349998078------8-88--744753788851899778999999-99985089-735799999999999999988876
Q ss_pred HCCCC-C-HHHHHHHHHHCC-CCC-CHHHHHHHHH--HHHHHHHHHHCCCHHH----HHHHHH-HHHHH---HHHHHHHC
Q ss_conf 80689-9-899999998622-599-5889999999--9999999870009679----999999-99998---68766651
Q 004561 450 MARQQ-T-LTSLLTLMASYS-EET-EYTVLSNLIT--ISYKIGRIAADARPEL----LDYLKQ-FFISL---FQNSAEKL 515 (745)
Q Consensus 450 ~~g~l-~-~~~~l~l~~~l~-~e~-~~~~w~~~~~--~l~~l~~~~~~~~~~~----~~~~~~-~~~~l---~~~~~~~l 515 (745)
.+|.. + ++.++++++++. +|. ++.+|..++. .+..|...+..-+|+. ...++. +...+ +.++|+++
T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~l~lp~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 658 (867)
T 2gtq_A 579 SDGVELPKHEKLLAAVEKVISDDLLDNAFKALLLGVPSEAELWDGAENIDPLRYHQAREALLDTLAVHFLPKWHELNRQA 658 (867)
T ss_dssp HHTCCCCCCHHHHHHHHHHHHCSSSCHHHHHHHTCCCCHHHHTTTCSSBCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 43787774699999999986386779999999840889999985300289389999999999999999999999999974
Q ss_pred -----C-CCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHEECCCCCCHHH
Q ss_conf -----9-8548999988899999999999973998889999999999632899999990124576522000144699889
Q 004561 516 -----G-WDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSG 589 (745)
Q Consensus 516 -----g-~~~~~~~~~~~~~lr~~il~~ac~~~~~~c~~~a~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~ 589 (745)
| |+.+. ++...+.||..++.++|..| ++|++.|.++|.+...+ -...++.|| ++ +.....++++.
T Consensus 659 ~~~~~~~~~~~~-~~~~~r~lr~~~l~~l~~~~-~~~~~~a~~~~~~~a~n--mt~~~~al~--~l---~~~~~~~~~~~ 729 (867)
T 2gtq_A 659 AKQENQSYEYSP-EAAGWRTLRNVCRAFVLRAD-PAHIETVAEKYGEMAQN--MTHEWGILS--AV---NGNESDTRNRL 729 (867)
T ss_dssp HHHHTTCCSCCH-HHHHHHHHHHHHHHHHHHHC-TTHHHHHHHTHHHHCSS--HHHHHHHHH--HH---TTCCSHHHHHH
T ss_pred HCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHCCC--HHHHHHHHH--HH---HHCCCCCHHHH
T ss_conf 245788888986-78999999999999998569-52899999999886789--757999999--99---70584018999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC--CCCCC-CCHHEEE
Q ss_conf 9999999980999999999999807999899999999986059--68864-3100001
Q 004561 590 YESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS--EVRSQ-DAVYGLA 644 (745)
Q Consensus 590 ~~~l~~~y~~~~~~~er~~il~aLact~d~~ll~~~L~~~l~~--~i~~q-d~~~~~~ 644 (745)
++.+.++|+++....+|-.++. ||++++.++++++.+..++ +++.. ++..++.
T Consensus 730 ~~~f~~~~~~~~~~~~k~~~~~--a~~~~~~~~~~v~~l~~~~~f~~~npn~~r~l~~ 785 (867)
T 2gtq_A 730 LAQFADKFSDDALVMDKYFALV--GSSRRSDTLQQVRTALQHPKFSLENPNKARSLIG 785 (867)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH--HHCCSTTHHHHHHHHTTSTTCCTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHH--HCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 9999998757935888999997--3699857999999996596778679669999999
No 6
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*
Probab=1.00 E-value=1 Score=661.70 Aligned_cols=679 Identities=19% Similarity=0.238 Sum_probs=474.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCC-C-EEEECCCCCCEE-ECCCEEEEEEEECCCCCCCEEEEEEECCEEE
Q ss_conf 679847878112326779983088999996799-7-598277654203-4499499999806888762789999710288
Q 004561 4 FKGQPPDARRCFPCWDEPACKATFKITLDVPSE-L-VALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYV 80 (745)
Q Consensus 4 ~~~ep~~Ar~~fPc~Dep~~ka~f~l~i~~p~~-~-~~~sn~~~~~~~-~~~~~~~~~f~~t~~~~~y~~a~~vg~f~~~ 80 (745)
.||||.+||+||||||+|++||+|+++|++|++ | +++|||++.++. ..+++++++|..++|||+|++||++|+|+.+
T Consensus 139 Tq~Ep~~AR~~fPc~DeP~~kAtf~itI~~p~~~y~~alSNg~l~~~~~~~~g~~~~~f~~t~pmstYL~A~~vG~f~~~ 218 (891)
T 3b34_A 139 TQCEAEGFRHITYYLDRPDVLARFTTKIIADKIKYPFLLSNGNRVAQGELENGRHWVQWQDPFPKPCYLFALVAGDFDVL 218 (891)
T ss_dssp EECTTTTGGGTSSBCCSTTCCEEEEEEEEEETTTCCEEEESSEEEEEEECSTTEEEEEEEEEEEECGGGCCEEEECCEEE
T ss_pred ECCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCEEECCCEEEEEEEECCCCCCEEEEEEECCCEEE
T ss_conf 40356887751057887151427899999652216589857854441350698399999958986520157995142687
Q ss_pred EEE--ECC--CEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 711--059--8379999718840039999999999999999982899999766714438999852123552011035213
Q 004561 81 EDH--TSD--GIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALL 156 (745)
Q Consensus 81 ~~~--~~~--g~~i~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yP~~k~~~v~~P~~~~g~me~~gli~~~e~~ll 156 (745)
+.. +.+ ++++++|++|+..+.++++++.+.+++++|+++||+|||++|+++|++|+|..|||||||+++|++..++
T Consensus 219 ~~~~~t~~g~~v~l~vy~~p~~~~~~~~al~~~~~~l~~~e~~fG~pYP~~k~diVavPdf~~GaMEn~GLitf~e~~lL 298 (891)
T 3b34_A 219 RDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVL 298 (891)
T ss_dssp EEEEECTTCCEEEEEEEECTTCGGGCHHHHHHHHHHHHHHHHHHCCCCCSSEEEEEEESCCSSSEECCTTEEEEEGGGTC
T ss_pred EEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCC
T ss_conf 40014268981678999646738999999999999999999983899877520189747888675035850674352004
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH--HHH-HHHHH
Q ss_conf 368888188899999999999999874064135655245897879999999998521811378999999--989-88521
Q 004561 157 YDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLD--ECT-EGLRL 233 (745)
Q Consensus 157 ~~~~~~~~~~~~~~~~~iaHEiaHqWfG~~vt~~~w~~~Wl~EGfa~y~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~ 233 (745)
+++..++...++.+..+|+||+|||||||+||++||+++|||||||+|++..+.....+.... .+.. ... ..+..
T Consensus 299 ~~~~~~t~~~~~~i~~vIAHElAHqWFGNlVT~~~W~dlWLnEGFAtY~e~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 376 (891)
T 3b34_A 299 ARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVN--RINNVRTMRGLQFAE 376 (891)
T ss_dssp CCTTTCCHHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHSCHHHH--HHHHHHHHHHTHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCEEHHHHHHHHHHHHHHHHHCHHHH--HHHHHHHHHHHHHHH
T ss_conf 684437678888999999999999973789966655543204999999999999997278999--999999999866554
Q ss_pred HCCCCCCCEEEECCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCH
Q ss_conf 02389998365249920120015522323320899999985489999999999998613699997899999996119978
Q 004561 234 DGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPV 313 (745)
Q Consensus 234 d~~~~~~p~~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~iG~e~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~~~~~~ 313 (745)
|+...+||+.. .+..+++..|+.++|.||++|++||+..+|++.|+++|+.|+++|+|++++++|||+++++++|.++
T Consensus 377 D~~~~~~Pi~~--~~~~~i~~~f~~i~Y~KGa~VLrML~~~lG~e~F~~gLr~Yl~~~~~~~att~Df~~ale~~sg~dL 454 (891)
T 3b34_A 377 DASPMAHPIRP--DMVIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFERHDGSAATCDDFVQAMEDASNVDL 454 (891)
T ss_dssp HTSTTCCCSSC--SEESCGGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEECHHHHHHHHHHHHCCCC
T ss_pred HCCCCCCCCCC--CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCH
T ss_conf 13655777766--6633420125530505999999999998789999999999998643789999999999998748898
Q ss_pred HHHHHHHHCCCCCCEEEEEEEC----C--EEEEEEEEECCCCCCCCCEEEEEEEEEECCCC--C----------EEEEEE
Q ss_conf 9999884338895349999718----8--89999983127999999803898999985466--1----------111774
Q 004561 314 NKLMNSWTKQKGYPVISVKVKE----E--KLELEQSQFLSSGSPGDGQWIVPITLCCGSYD--V----------CKNFLL 375 (745)
Q Consensus 314 ~~~~~~W~~q~G~P~i~v~~~~----~--~i~i~Q~rf~~~~~~~~~~w~iPl~~~~~~~~--~----------~~~~~l 375 (745)
..| ++|++|+|+|+++|++.. + +++|+|+++...+......|+|||++.+.+.. . ...+++
T Consensus 455 ~~f-~~W~~q~G~P~l~V~~~~~~~~~~~~ltl~Q~~~~~~~~~~~~~~~iPi~v~l~~~~G~~~~~~~~~~~~~~~~~l 533 (891)
T 3b34_A 455 SHF-RRWYSQSGTPIVTVKDDYNPETEQYTLTISQRTPATPDQAEKQPLHIPFAIELYDNEGKVIPLQKGGHPVNSVLNV 533 (891)
T ss_dssp TTT-THHHHCCSCCEEEEEEEEETTTTEEEEEEEEECCCBTTBSCCCCCCEEEEEEEECTTSCBCCCEETTEECCSEEEE
T ss_pred HHH-HHHHCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEE
T ss_conf 999-9998089971499987763679879999999637999987786379999999973799750132256665338995
Q ss_pred ECCCEEEEECCCCCCCCCCCCCCCCCEEECCCCEEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-----
Q ss_conf 166108981365344456789988705736797025999759888999999998139992418989999999998-----
Q 004561 376 YNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQLSETDRFGILDDHFALCM----- 450 (745)
Q Consensus 376 ~~~~~~~~l~~~~~~~~~~~~~~~~~i~~N~~~~gyyrv~Yd~~~~~~l~~~l~~~~i~~~~r~~li~D~~~la~----- 450 (745)
+.++.++.++.+ ... .|+++|.+..||+||+||...|.++.. +.. .-+..+|...+.++.....
T Consensus 534 ~~~~~~~~~~~v-------~~~--P~~~l~~~~s~~~~v~~~~~~~~l~~~-l~~-d~d~~~R~~a~~~L~~~~~~~~~~ 602 (891)
T 3b34_A 534 TQAEQTFVFDNV-------YFQ--PVPALLCEFSAPVKLEYKWSDQQLTFL-MRH-ARNDFSRWDAAQSLLATYIKLNVA 602 (891)
T ss_dssp CSSEEEEEECCC-------CSC--CEEEESTTCCSSCEEECCCCHHHHHHH-HHH-CSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCC-------CCC--CCEEECCCCCCEEEEECCCCHHHHHHH-HHH-CCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 478179997168-------888--847986898625999678999999999-853-887047999999999999999987
Q ss_pred ---CCC-CC-HHHHHHHHHH-CCCC-CCHHHHHHHHH--HHHHHHHHHHCCCHHHHHHHH--------HHHHHHHHHHHH
Q ss_conf ---068-99-8999999986-2259-95889999999--999999987000967999999--------999998687666
Q 004561 451 ---ARQ-QT-LTSLLTLMAS-YSEE-TEYTVLSNLIT--ISYKIGRIAADARPELLDYLK--------QFFISLFQNSAE 513 (745)
Q Consensus 451 ---~g~-l~-~~~~l~l~~~-l~~e-~~~~~w~~~~~--~l~~l~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~ 513 (745)
.|. +. ...+++.++. |..+ -++..-..++. ....|...+..-+|+.....+ .-+...+..+|+
T Consensus 603 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~l~lp~~~~~~~~~~~~d~~~i~~~r~~~~~~la~~~~~~~~~~~~ 682 (891)
T 3b34_A 603 RHQQGQPLSLPVHVADAFRAVLLDEKIDPALAAEILTLPSVNEMAELFDIIDPIAIAEVREALTRTLATELADELLAIYN 682 (891)
T ss_dssp HHHHTCCCCCCHHHHHHHHHHHHCSSSCHHHHHHHTSCCCHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 64337876766999999999864877699999998429998999976335898999999999999999998999999999
Q ss_pred HCCCCCC---CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHEECCCCCCHHHH
Q ss_conf 5198548---9999888999999999999739988899999999996328999999901245765220001446998899
Q 004561 514 KLGWDSK---PGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGY 590 (745)
Q Consensus 514 ~lg~~~~---~~~~~~~~~lr~~il~~ac~~~~~~c~~~a~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~ 590 (745)
++- ... ..+..-.+.||..+|..+|..+..+..+.|.+.|..- + + -.-|-+.+.+++..-....+...
T Consensus 683 ~~~-~~~~~~~~~~~~~r~l~n~~l~~l~~~~~~~~~~~~~~~~~~a--~---n---mtd~~~al~~~~~~~~~~~~~~l 753 (891)
T 3b34_A 683 ANY-QSEYRVEHEDIAKRTLRNACLRFLAFGETHLADVLVSKQFHEA--N---N---MTDALAALSAAVAAQLPCRDALM 753 (891)
T ss_dssp HTC-CSSCCCSHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--S---S---HHHHHHHHHHHHHTTCTTHHHHH
T ss_pred HHC-CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC--C---C---HHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 615-5778999899999999999999998679810899999997647--8---8---67899999998426861499999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHEEE-ECCC-CHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999980999999999999807999899999999986059688643100001-3233-38999999999699999992
Q 004561 591 ESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSEVRSQDAVYGLA-VSIE-GRETAWKWLKDNWDHISKTW 668 (745)
Q Consensus 591 ~~l~~~y~~~~~~~er~~il~aLact~d~~ll~~~L~~~l~~~i~~qd~~~~~~-~~~~-~~~~~~~f~~~n~~~i~~~~ 668 (745)
+...++++.....-+|=-.+-| ++.++..+.++-.+.-++. |. -..| .|.++-.|...|-..+...-
T Consensus 754 ~~f~~~~~~~~lv~~kwf~~qa--~~~~~~~~~~v~~l~~h~~---------f~~~npn~~r~l~~~f~~~n~~~fh~~~ 822 (891)
T 3b34_A 754 QEYDDKWHQNGLVMDKWFILQA--TSPAANVLETVRGLLQHRS---------FTMSNPNRIRSLIGAFAGSNPAAFHAED 822 (891)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH--TCCCTTHHHHHHHHTTCTT---------CCTTCHHHHHHHHHHHHHHCHHHHTCTT
T ss_pred HHHHHHHCCCCHHHHHHHHHHH--CCCCCCHHHHHHHHHCCCC---------CCCCCCCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 9999986658178989999984--7898139999999854987---------8877984899999998604952367999
Q ss_pred CCC-CCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHH
Q ss_conf 998-42668999831258999989999998751998-6278999999999999
Q 004561 669 GSG-FLITRFISSIVSPFASYEKVREVEEFFSSRCK-PYIARTLRQSIERVQI 719 (745)
Q Consensus 669 ~~~-~~~~~~i~~~~~~~~t~~~l~~~~~f~~~~~~-~~~~~~~~~~~e~i~~ 719 (745)
|++ ..++..|..+ ..++-+--...+..|-.=+.. +.-...+++++++|..
T Consensus 823 g~gy~~~~~~~~~l-~~~np~~a~r~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 874 (891)
T 3b34_A 823 GSGYLFLVEMLTDL-NSRNPQVASRLIEPLIRLKRYDAKRQEKMRAALEQLKG 874 (891)
T ss_dssp SHHHHHHHHHHHHH-HHHCHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 95899999999986-07698999989988766540599899999999999873
No 7
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A*
Probab=1.00 E-value=1 Score=653.65 Aligned_cols=605 Identities=19% Similarity=0.261 Sum_probs=422.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCC-C-EEEECCCCCCEE-ECCCEEEEEEEECCCCCCCEEEEEEECCEEE
Q ss_conf 679847878112326779983088999996799-7-598277654203-4499499999806888762789999710288
Q 004561 4 FKGQPPDARRCFPCWDEPACKATFKITLDVPSE-L-VALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYV 80 (745)
Q Consensus 4 ~~~ep~~Ar~~fPc~Dep~~ka~f~l~i~~p~~-~-~~~sn~~~~~~~-~~~~~~~~~f~~t~~~~~y~~a~~vg~f~~~ 80 (745)
.||||.+||+||||||+|++||+|+++|++|++ | +++|||++.++. ..+++++++|..++|||+|++||++|+|..+
T Consensus 121 TQ~Ep~~AR~~fPC~DeP~~KAtf~itIt~p~~~~~valSNg~l~~~~~~~~g~~~~~f~~t~pmstYLvA~~vG~f~~~ 200 (889)
T 3ebh_A 121 SQCEATGFRRITFFIDRPDMMAKYDVTVTADKEKYPVLLSNGDKVNEFEIPGGRHGARFNDPPLKPCYLFAVVAGDLKHL 200 (889)
T ss_dssp EECTTTTGGGTSCBCCSTTCCEEEEEEEEEETTTCCEEEESSEEEEEEEETTTEEEEEEEEEEEECGGGCCEEEECEEEE
T ss_pred ECCCCCCCCEEEEECCCCCCCEEEEEEEEECCCCCEEEECCCCCCCCEECCCCEEEEEEECCCCCCHHHEEEEEECCEEE
T ss_conf 74457887779997377776027999999836557699806845454022798399999538965433304687223687
Q ss_pred EEE--EC-C--CEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCEEECCCC
Q ss_conf 711--05-9--837999971884003999999999999999998289999976671443899985212355201103521
Q 004561 81 EDH--TS-D--GIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETAL 155 (745)
Q Consensus 81 ~~~--~~-~--g~~i~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yP~~k~~~v~~P~~~~g~me~~gli~~~e~~l 155 (745)
+.. +. + ++++++|++|+..+.++++++.+.+++++|+++||+|||++|+++|++|+|..|||||||+++|++..+
T Consensus 201 ~~~~~t~~~G~~v~l~vy~~p~~~~~~~~al~~~~~~l~~~e~~fG~pYP~~kyd~VavPdF~~GaMEN~GLvtf~e~~l 280 (889)
T 3ebh_A 201 SATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENKGLNIFNANSL 280 (889)
T ss_dssp EEEEECSSSCCEEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHHHHCCCCCSSEEEEEEESCCSSSEECCTTEEEEEGGGT
T ss_pred EEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHCCCCEEEECCCCC
T ss_conf 62100047898158999954273999999999999999999998789999876679982466640230776367412313
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHH--HHHHHHHHHHHHHHH
Q ss_conf 336888818889999999999999987406413565524589787999999999852181137--899999998988521
Q 004561 156 LYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWK--IWTQFLDECTEGLRL 233 (745)
Q Consensus 156 l~~~~~~~~~~~~~~~~~iaHEiaHqWfG~~vt~~~w~~~Wl~EGfa~y~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 233 (745)
++++..++...++.+..+|+||+|||||||+||++||+++|||||||+|++..+.....+... ........ ...+..
T Consensus 281 L~~~~~~t~~~~~~i~~vIAHElAHQWFGNlVT~~~W~dlWLnEGFAtY~e~~~~~~~~~~~~~r~~~~~~lr-~~~~~~ 359 (889)
T 3ebh_A 281 LASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKTVTTRLSHVDLLR-SVQFLE 359 (889)
T ss_dssp CCCTTTSCTHHHHHHHHHHHHHHHTTTBTTTBEESSGGGHHHHHHHHHHHHHHHHHHHHCCTHHHHHHHHHHH-HHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHH
T ss_conf 2585447578899999999999999872674233466665323898999999999986077999999999999-876654
Q ss_pred HCCCCCCCEEEECCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC----
Q ss_conf 0238999836524992012001552232332089999998548999999999999861369999789999999611----
Q 004561 234 DGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGS---- 309 (745)
Q Consensus 234 d~~~~~~p~~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~iG~e~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~~---- 309 (745)
|+...+||+.. ....+++..|+.++|.||++||+||+..+|++.|+++|+.|+++|+|++++++|||+++++++
T Consensus 360 D~~~~shPI~~--~~~~ei~~~f~~i~Y~KGa~vLrML~~~lGde~F~~gLr~Yl~~~~~~natt~Df~~ale~as~~~~ 437 (889)
T 3ebh_A 360 DSSPLSHPIRP--ESYVSMENFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDGNTATCEDFNYAMEQAYKMKK 437 (889)
T ss_dssp HTSTTCCCSSC--SEESCGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEECHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCC--CCHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 04756788877--6512355404513656899999999998689999999999999737999899999999999754306
Q ss_pred ---CCCHHHHHHHHHCCCCCCEEEEEEEC----C--EEEEEEEEECCCCCCCCCEEEEEEEEEECCC-CC-----EEEEE
Q ss_conf ---99789999884338895349999718----8--8999998312799999980389899998546-61-----11177
Q 004561 310 ---GEPVNKLMNSWTKQKGYPVISVKVKE----E--KLELEQSQFLSSGSPGDGQWIVPITLCCGSY-DV-----CKNFL 374 (745)
Q Consensus 310 ---~~~~~~~~~~W~~q~G~P~i~v~~~~----~--~i~i~Q~rf~~~~~~~~~~w~iPl~~~~~~~-~~-----~~~~~ 374 (745)
|.++.. |++|++|+|||+++|+++. + +++++|+++...+......|+|||++...+. .+ ...+.
T Consensus 438 ~~~g~dL~~-f~~Wl~q~G~P~l~V~~~~d~~~~~~~ltl~Q~~~~~~~~~~~~~~~IPl~v~l~~~~~G~~~~~~~~l~ 516 (889)
T 3ebh_A 438 ADNSANLNQ-YLLWFSQSGTPHVSFKYNYDAEKKQYSIHVNQYTKPDENQKEKKPLFIPISVGLINPENGKEMISQTTLE 516 (889)
T ss_dssp TCTTCCCTG-GGHHHHCCSCCEEEEEEEEETTTTEEEEEEEEECCCCSSCSSCCCCCEEEEEEEECTTTCCBCSCCEEEE
T ss_pred CCCCCCHHH-HHHHHCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCEEEEE
T ss_conf 778988899-9999659999559999755077877999999854799998878628999999998478992334216999
Q ss_pred EECCCEEEEECCCCCCCCCCCCCCCCCEEECCCCEEEEEEECC--HHHHHHHHHHHHHCCCCHHHHHHHHH--------H
Q ss_conf 4166108981365344456789988705736797025999759--88899999999813999241898999--------9
Q 004561 375 LYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYD--KDLAARLGYAIEMKQLSETDRFGILD--------D 444 (745)
Q Consensus 375 l~~~~~~~~l~~~~~~~~~~~~~~~~~i~~N~~~~gyyrv~Yd--~~~~~~l~~~l~~~~i~~~~r~~li~--------D 444 (745)
++..++++.++.+ ... -+..++.+..+++++.|+ .+.+.. .+..+. +..+|..-.. .
T Consensus 517 l~~~~q~f~~~~~------~~~---p~~sl~r~fsa~v~l~~~~~~~~l~~---l~~~d~-d~~~r~~a~~~l~~~~~~~ 583 (889)
T 3ebh_A 517 LTKESDTFVFNNI------AVK---PIPSLFRGFSAPVYIEDQLTDEERIL---LLKYDS-DAFVRYNSCTNIYMKQILM 583 (889)
T ss_dssp ECSSEEEEEESCC------CSC---CEEEESTTCCSSSEEECCCCHHHHHH---HHHHCS-CHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCEEEEECCC------CCC---CEEEECCCCCCEEEEECCCCHHHHHH---HHHHCC-CHHHHHHHHHHHHHHHHHH
T ss_conf 6378279998478------889---74897689983599947999999999---986289-8228999999999999999
Q ss_pred HHHHHHCC---------CCCH-HHHHHHHHH-CCCC-CCHHHHHHHHHH--HHHHHHHHHCCCHHHHHH--------HHH
Q ss_conf 99999806---------8998-999999986-2259-958899999999--999999870009679999--------999
Q 004561 445 HFALCMAR---------QQTL-TSLLTLMAS-YSEE-TEYTVLSNLITI--SYKIGRIAADARPELLDY--------LKQ 502 (745)
Q Consensus 445 ~~~la~~g---------~l~~-~~~l~l~~~-l~~e-~~~~~w~~~~~~--l~~l~~~~~~~~~~~~~~--------~~~ 502 (745)
...-...| .... ..+++.++. |..+ -++.....+++. ...|...+..-+|+.... +..
T Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~l~lp~~~~~~~~~~~~d~~~~~~~~~~~~~~~a~ 663 (889)
T 3ebh_A 584 NYNEFLKAKNEKLESFQLTPVNAQFIDAIKYLLEDPHADAGFKSYIVSLPQDRYIINFVSNLDTDVLADTKEYIYKQIGD 663 (889)
T ss_dssp HHHHHHHHHHHTCSSCCCCCCCHHHHHHHHHHHTCTTSCHHHHHHHTSCCCHHHHGGGCTTBCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99876425644444556556679999999999739787999999880498989998655579989999999999999999
Q ss_pred HHHHHHHHHHHHCC------------CCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 99998687666519------------854899998889999999999997399888999999999963289999999012
Q 004561 503 FFISLFQNSAEKLG------------WDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDI 570 (745)
Q Consensus 503 ~~~~l~~~~~~~lg------------~~~~~~~~~~~~~lr~~il~~ac~~~~~~c~~~a~~~f~~~~~~~~~~~i~~~l 570 (745)
-+...+..+|+++. +.. +.+..-.+.||..+|..+|..+.++..+.|.+.|.. . .-.-
T Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~l~n~~l~~l~~~~~~~~~~~~~~~~~~--------a-nmtd 733 (889)
T 3ebh_A 664 KLNDVYYKMFKSLEAKADDLTYFNDESHV-DFDQMNMRTLRNTLLSLLSKAQYPNILNEIIEHSKS--------P-YPSN 733 (889)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTTTTCTTCC-CHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHTTC--------S-CHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------C-CHHH
T ss_conf 99999999999720354444555667889-989998999999999999845975699999999864--------6-8368
Q ss_pred HHHHHHHHEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC--CCCCCCC
Q ss_conf 45765220001446998899999999980999999999999807999899999999986059--6886431
Q 004561 571 RKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS--EVRSQDA 639 (745)
Q Consensus 571 r~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~er~~il~aLact~d~~ll~~~L~~~l~~--~i~~qd~ 639 (745)
|-+.+.+++.. ...++..+...++++.....-+|=-.+-|.+... ..+.++-.+.-++ +++..+.
T Consensus 734 ~~~al~~~~~~--~~~~~~l~~f~~~~~~~~lv~dkwf~~qa~~~~~--~~~~~v~~l~~h~~f~~~npn~ 800 (889)
T 3ebh_A 734 WLTSLSVSAYF--DKYFELYDKTYKLSKDDELLLQEWLKTVSRSDRK--DIYEILKKLENEVLKDSKNPND 800 (889)
T ss_dssp HHHHHHHGGGS--TTHHHHHHHHHHHHTTSHHHHHHHHHHHHTCCCT--THHHHHHHHHHHTTTTCCCHHH
T ss_pred HHHHHHHHHCC--HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC--CHHHHHHHHHCCCCCCCCCCCH
T ss_conf 99999988668--1589999999998678940256767985088984--8899999985598888789829
No 8
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=592.57 Aligned_cols=398 Identities=22% Similarity=0.381 Sum_probs=360.1
Q ss_pred CCCEEEEEEECCEEEEEEEEECCCCCC---CCCEEEEEEEEEECCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 953499997188899999831279999---99803898999985466111177416610898136534445678998870
Q 004561 325 GYPVISVKVKEEKLELEQSQFLSSGSP---GDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGW 401 (745)
Q Consensus 325 G~P~i~v~~~~~~i~i~Q~rf~~~~~~---~~~~w~iPl~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~ 401 (745)
|||+|+|+++++.++|+|+||+.++.. ....|+|||+++++..+.....|+..++.++.++ .++ +|
T Consensus 1 GyPvvtV~~~~~~~~l~Q~RFl~~~~~~~~~~~~W~IPl~~~~~~~~~~~~~~l~~~~~~i~l~---------~~~--~w 69 (419)
T 3rjo_A 1 GFPLITITVRGRNVHMKQEHYMKGSDGAPDTGYLWHVPLTFITSKSDMVHRFLLKTKTDVLILP---------EEV--EW 69 (419)
T ss_dssp CEEEEEEEEETTEEEEEEEEEC----------CCCCEEEEEEESSCSSCEEEEECSSEEEEECS---------SCC--SC
T ss_pred CCCEEEEEECCCEEEEEEEECCCCCCCCCCCCEEEEEEEEEEECCCCCCCEEEEECCCEEEECC---------CCC--CE
T ss_conf 9987999977987999983025899989888849999889980798866548983684378758---------888--36
Q ss_pred EEECCCCEEEEEEECCHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 57367970259997598889999999981--3999241898999999999806899899999998622599588999999
Q 004561 402 IKLNVNQTGFYRVKYDKDLAARLGYAIEM--KQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLI 479 (745)
Q Consensus 402 i~~N~~~~gyyrv~Yd~~~~~~l~~~l~~--~~i~~~~r~~li~D~~~la~~g~l~~~~~l~l~~~l~~e~~~~~w~~~~ 479 (745)
|++|.+++|||||+||+.+|.+|+.+|.. ..||+.||+|||+|+|+||++|.++|+.+|++++||++|++|+||.+++
T Consensus 70 i~~N~~~~GyYRVnYd~~~w~~L~~~L~~~~~~i~~~dRa~LidD~~~La~ag~~~~~~~l~l~~yL~~E~~y~~w~~~~ 149 (419)
T 3rjo_A 70 IKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGL 149 (419)
T ss_dssp EEEEESSSSCCEEECHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHGGGGGCCSHHHHHHHH
T ss_pred EEEECCCCCEEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99817865058997588899999999864876589767999999999999859978999999998750462688999999
Q ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999870009-67999999999998687666519854899998889999999999997399888999999999963
Q 004561 480 TISYKIGRIAADAR-PELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFL 558 (745)
Q Consensus 480 ~~l~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~~~~~c~~~a~~~f~~~~ 558 (745)
+.|.++.+++.+.+ ++.++.|+.|+++++.|+++++||++ ++++.+..+|..++.+||.+|+++|+++|.++|++|+
T Consensus 150 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lgw~~--~~~~~~~~lR~~~l~~ac~~g~~~c~~~A~~~f~~~~ 227 (419)
T 3rjo_A 150 NELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLIDKQTWTD--EGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKWK 227 (419)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHCCSSC--CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999999986268526799999999999999999749877--8509999999999999986699789999999999986
Q ss_pred CCCCCCCCCCHHHHHHHHHHEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC-CCCC
Q ss_conf 289999999012457652200014469988999999999809999999999998079998999999999860596-8864
Q 004561 559 ADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSE-VRSQ 637 (745)
Q Consensus 559 ~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~er~~il~aLact~d~~ll~~~L~~~l~~~-i~~q 637 (745)
.++..+.||||+|.+|||++++ . +++|+++|++|+++++++||..++.||||++|+++++++|+++++++ |+.|
T Consensus 228 ~~~~~~~i~~dlr~~Vy~~~~~---~--~~~~~~l~~~y~~s~~~~ek~~ll~aL~~s~d~~ll~~~L~~~l~~~~ir~q 302 (419)
T 3rjo_A 228 ESNGNLSLPVDVTLAVFAVGAQ---S--TEGWDFLYSKYQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQ 302 (419)
T ss_dssp HTTTCSCCCGGGHHHHHHHHTT---S--HHHHHHHHHHHHHCCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTSSSCGG
T ss_pred HCCCCCCCCCCCCEEEEEEEEC---C--HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHH
T ss_conf 1898788787751547743408---8--8899999999705788899999999707899899999999998477777626
Q ss_pred CCHHEEE-ECCC--CHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCH-HHHHHHH
Q ss_conf 3100001-3233--38999999999699999992998-4266899983125899998999999875199862-7899999
Q 004561 638 DAVYGLA-VSIE--GRETAWKWLKDNWDHISKTWGSG-FLITRFISSIVSPFASYEKVREVEEFFSSRCKPY-IARTLRQ 712 (745)
Q Consensus 638 d~~~~~~-~~~~--~~~~~~~f~~~n~~~i~~~~~~~-~~~~~~i~~~~~~~~t~~~l~~~~~f~~~~~~~~-~~~~~~~ 712 (745)
|...+|. ++.| |++++|+|+++||+.|.++++.+ +.++.+|..+++.|+|+++++++++||+.++.++ +.+++.+
T Consensus 303 D~~~~~~~v~~n~~g~~~aw~fl~~nw~~l~~~~~~~~~~~~~~i~~~~~~~~t~~~l~e~~~Ff~~~~~~~~~~~~~~q 382 (419)
T 3rjo_A 303 EFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKENGSQLRCVQQ 382 (419)
T ss_dssp GHHHHHHHHHTSTTTHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHTTTTCCSHHHHHHHHHHHHTTTTC-CCCHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 89999999854932289999999999999999857671269999999851078999999999999848233557899999
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf 999999999999982492489999997210
Q 004561 713 SIERVQINAKWVESIRNEGHLAEAVKELAY 742 (745)
Q Consensus 713 ~~e~i~~ni~W~~~~~~~~~i~~wl~~~~~ 742 (745)
++|+|+.|++|++++.+. |.+||+.+..
T Consensus 383 ale~i~~ni~W~~~~~~~--v~~wL~~~~~ 410 (419)
T 3rjo_A 383 TIETIEENIGWMDKNFDK--IRVWLQSEKL 410 (419)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_conf 999999999999977999--9999987068
No 9
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea}
Probab=1.00 E-value=1 Score=575.96 Aligned_cols=411 Identities=19% Similarity=0.322 Sum_probs=330.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEECCCCCCEEECCCEEEEEEEECCCCCCCEEEEEEECCEEEEEE
Q ss_conf 67984787811232677998308899999679975982776542034499499999806888762789999710288711
Q 004561 4 FKGQPPDARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDH 83 (745)
Q Consensus 4 ~~~ep~~Ar~~fPc~Dep~~ka~f~l~i~~p~~~~~~sn~~~~~~~~~~~~~~~~f~~t~~~~~y~~a~~vg~f~~~~~~ 83 (745)
.||||.+||+||||||+|+.||+|+++|++|++|+++||+....+...++ +++|+.++|||+|++||++|+|..++
T Consensus 143 Tq~ep~~AR~~fPc~D~P~~katf~i~i~~p~~~~alsng~~~~~~~~~~--~~~f~~t~pmstYl~a~~vg~f~~~~-- 218 (605)
T 3cia_A 143 SQNQAIHARSWIPIQDTPSVRVTYTARITTDKDLLAVMSANNEPGTERDG--DYFFSMPQAIPPYLIAIGVGDLEFKA-- 218 (605)
T ss_dssp ECCTTTTGGGTSCBCCCTTCCEEEEEEEECCTTCEEEESSEEC----CCS--EEEEEEEEEECGGGCCEEEESCEEEE--
T ss_pred ECCCCCCHHHCEECCCCCCCEEEEEEEEEECCCCEEEECCCCCCEECCCC--EEEEEECCCCCCEEEEEEEEEEEEEC--
T ss_conf 66765675002103788674269999999769867875488552246997--59995079866104899995206722--
Q ss_pred ECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEC-CCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 059837999971884003999999999999999998289999976671443-8999852123552011035213368888
Q 004561 84 TSDGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHS 162 (745)
Q Consensus 84 ~~~g~~i~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yP~~k~~~v~~-P~~~~g~me~~gli~~~e~~ll~~~~~~ 162 (745)
.|+++++|++|+..+.++++++.+.+++++++++|| |||++++++|++ |+|++|||||||+ +|.+..++.++.
T Consensus 219 --~g~~~~v~~~p~~~~~~~~~~~~~~~~l~~~e~~fG-~YP~~k~d~v~~p~~f~~GgMEn~gl-tf~~~~ll~~~~-- 292 (605)
T 3cia_A 219 --MSHQTGIYAESYILDAAVAEFDDTQAMIDKAEQMYG-KYRWGRYDLLMLPPSFPFGGMENPRL-SFITPTVVAGDK-- 292 (605)
T ss_dssp --SSSSEEEEECSTTHHHHHHHSTTHHHHHHHHHHHHC-CCTTSCEEEEECCTTCSSSEECCTTE-EEECGGGCCSSS--
T ss_pred --CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCEEEECCCCCCCCCCCCCE-EEECCHHCCCCH--
T ss_conf --797179995437588999999999999999999737-89986431899778667786467867-995413226827--
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHH--HHHHHHHHHHHHHHHCC-CCC
Q ss_conf 188899999999999999874064135655245897879999999998521811378--99999998988521023-899
Q 004561 163 AAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKI--WTQFLDECTEGLRLDGL-AES 239 (745)
Q Consensus 163 ~~~~~~~~~~~iaHEiaHqWfG~~vt~~~w~~~Wl~EGfa~y~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~-~~~ 239 (745)
....+|+||+|||||||+||++||+++||+||||+|++++++++.+|++.. ...+..+.+.. ..+.+ ..+
T Consensus 293 ------~~~~viaHElaHqWfGnlVT~~~W~dlWLnEGfAtY~e~~~~~~~~g~~~~~~~~~~~~~~l~~-~l~~~~~~~ 365 (605)
T 3cia_A 293 ------SLVNLIAHELAHSWSGNLVTNESWRDLWLNEGFTSYVENRIMEAVFGTDRAVMEQALGAQDLNA-EILELDASD 365 (605)
T ss_dssp ------CSTHHHHHHHHHTTBTTTEEESSTTSTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-HHHHSCTTT
T ss_pred ------HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHHHCCCC
T ss_conf ------8999999999988602641007536768988999999999999974865888999999999999-998621379
Q ss_pred CCEEEECCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC----CHHH
Q ss_conf 983652499201200155223233208999999854899999999999986136999978999999961199----7899
Q 004561 240 HPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGE----PVNK 315 (745)
Q Consensus 240 ~p~~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~iG~e~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~~~~----~~~~ 315 (745)
+|+...+. ..+++..|+.++|.||+++++||+..+|++.|+++|+.|+++|++++++++|||++++++++. ++..
T Consensus 366 ~pl~~~~~-~~~~~~~f~~i~Y~KGa~vl~mL~~~lG~e~F~~~lr~yl~~~~~~~~t~~df~~~l~~~~~~~~~~~l~~ 444 (605)
T 3cia_A 366 TQLYIDLK-GRDPDDAFSGVPYVKGQLFLMYLEEKFGRERFDAFVLEYFDSHAFQSLGTDNFVKYLKANLTDKYPNIVSD 444 (605)
T ss_dssp TSSSCCCT-TCCTTTSCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTTEEECHHHHHHHHHHTTTTTSTTSSCH
T ss_pred CCCCCCCC-CCCHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 87626778-89956860761504899999999998686989999999999847489899999999999733024454426
Q ss_pred -HHHHHHCCCCCCEEEEEEECCEEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCEEEEECCCCCCCCCC
Q ss_conf -9988433889534999971888999998312799999980389899998546611117741661089813653444567
Q 004561 316 -LMNSWTKQKGYPVISVKVKEEKLELEQSQFLSSGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISK 394 (745)
Q Consensus 316 -~~~~W~~q~G~P~i~v~~~~~~i~i~Q~rf~~~~~~~~~~w~iPl~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 394 (745)
+|++|++++|+|+++|+.+.+.+ .+ .......|+....
T Consensus 445 ~~~~~W~~~~G~P~~~~~~~~~~~--~~------------------------~~~l~~~w~~~~~--------------- 483 (605)
T 3cia_A 445 NEINEWIFKAGLPSYAPQPTSNAF--KV------------------------IDKQINQLVTDEL--------------- 483 (605)
T ss_dssp HHHHHHHHSSSCCSSSCCCCCHHH--HH------------------------HHHHTCCTTTTSS---------------
T ss_pred HHHHHHHCCCCCCCEECCCCCHHH--HH------------------------HHHHHHHHHHCCC---------------
T ss_conf 568997468999844146782478--99------------------------9999999972688---------------
Q ss_pred CCCCCCCEEECCCCEEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHH
Q ss_conf 89988705736797025999759888999999998139992418989999999998068998999999986225995889
Q 004561 395 EGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTV 474 (745)
Q Consensus 395 ~~~~~~~i~~N~~~~gyyrv~Yd~~~~~~l~~~l~~~~i~~~~r~~li~D~~~la~~g~l~~~~~l~l~~~l~~e~~~~~ 474 (745)
....+.|++|+..+|..+.+.|.. .|+ .+|+++|||+|+|+.++.. ++.+..++++.++.++.+
T Consensus 484 ------------~~~~~~~~~~~~~~~~~~l~~l~~-~l~-~~~~~~l~~~~~~~~~~n~--ei~~~~~~~~~~~~~~~~ 547 (605)
T 3cia_A 484 ------------TLEQLPTAQWTLHEWLHFINNLPV-DLD-HQRMVNLDKAFDLTNSSNA--EIAHAWYLLSVRADYKEV 547 (605)
T ss_dssp ------------CCSCSGGGGCCSHHHHHHHHHSCS-CCT-TC-CHHHHHHHCCSSCSSH--HHHHHHHHHHHHHTCGGG
T ss_pred ------------CCCCCCHHHCCHHHHHHHHHHCCC-CCC-HHHHHHHHHHHCCCCCCCH--HHHHHHHHHHHHCCCHHH
T ss_conf ------------854331430889899999996176-699-9999999876098768779--999999999986598267
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999987
Q 004561 475 LSNLITISYKIGRIA 489 (745)
Q Consensus 475 w~~~~~~l~~l~~~~ 489 (745)
|..+...|..+.++.
T Consensus 548 ~~~~~~~l~~~gr~k 562 (605)
T 3cia_A 548 YPAMAKYLKSIGRRK 562 (605)
T ss_dssp HHHHHHHHHHCCCST
T ss_pred HHHHHHHHHHCCCCE
T ss_conf 999999999749865
No 10
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ...
Probab=1.00 E-value=1 Score=553.35 Aligned_cols=327 Identities=28% Similarity=0.445 Sum_probs=285.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEECCCCCCEE---ECCCEEEEEEEECCCCCCCEEEEEEECCEEE
Q ss_conf 6798478781123267799830889999967997598277654203---4499499999806888762789999710288
Q 004561 4 FKGQPPDARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEK---VDGNMKTVSYQESPIMSTYLVAVVIGLFDYV 80 (745)
Q Consensus 4 ~~~ep~~Ar~~fPc~Dep~~ka~f~l~i~~p~~~~~~sn~~~~~~~---~~~~~~~~~f~~t~~~~~y~~a~~vg~f~~~ 80 (745)
.||||.+||+||||||+|+.||+|+++|++|++++++|||++.++. .++++++++|..++|||+|++||+||+|+..
T Consensus 131 Tq~ep~~AR~~fPc~D~P~~Katf~i~I~~p~~~~alsng~~~~~~~~~~~~~~~~~~f~~t~pmstYL~a~~vg~f~~~ 210 (608)
T 3u9w_A 131 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPCYLIALVVGALESR 210 (608)
T ss_dssp ECCTTTTGGGTSCBCCSTTCCEEEEEEEEEETTSEEEESSEEEEEEECTTCTTEEEEEEEEEEEECGGGCCEEEESCEEE
T ss_pred ECCCCCCCCEEEEECCCCCEEEEEEEEEECCCCEEEEEECCCCCEEECCCCCCEEEEEEEECCCCCCEEEEEEEEEEEEE
T ss_conf 84457887878886686651579999950785204666303354031257897389999966874427999998301467
Q ss_pred EEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEC-CCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 711059837999971884003999999999999999998289999976671443-8999852123552011035213368
Q 004561 81 EDHTSDGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDD 159 (745)
Q Consensus 81 ~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yP~~k~~~v~~-P~~~~g~me~~gli~~~e~~ll~~~ 159 (745)
+ .|+++++|++|+..+.++++++.+.++++++++++| |||++++++|++ |+|++|||||||++++++..+..+.
T Consensus 211 ~----~~~~~~v~~~p~~~~~~~~~~~~~~~~l~~~e~~~g-~Yp~~~~~~vv~~p~f~~GgMEn~gl~~~~~~~l~~~~ 285 (608)
T 3u9w_A 211 Q----IGPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLGG-PYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLLAGDK 285 (608)
T ss_dssp E----EETTEEEEECHHHHHHHHHHTTTHHHHHHHHHHHHC-CCCSSCCEEEECCTTCSSSEECCTTEEEECGGGCCSSS
T ss_pred E----CCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHCEEEECCCCCCHHHHCCCCEEEEEEEECCCC
T ss_conf 6----077369996763688899999988888776873377-78735540063020002103426753244211204651
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHHCCCC
Q ss_conf 888188899999999999999874064135655245897879999999998521811378999999989-8852102389
Q 004561 160 QHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAE 238 (745)
Q Consensus 160 ~~~~~~~~~~~~~~iaHEiaHqWfG~~vt~~~w~~~Wl~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~ 238 (745)
. +..+|+||+|||||||+||++||+|+|||||||+|++++++++++|++.....+..... .....|....
T Consensus 286 ~---------~~~viaHElAHqWfGnlVT~~~W~d~WLnEGfAty~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (608)
T 3u9w_A 286 S---------LSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFGE 356 (608)
T ss_dssp T---------TTHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred H---------HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 1---------6788888764304418374666666559976799999999999716113678899999999988763001
Q ss_pred CCCEEEECCCCCHH--HCCCCCCCCCCHHHHHHHHHHHHC-HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHH
Q ss_conf 99836524992012--001552232332089999998548-999999999999861369999789999999611997899
Q 004561 239 SHPIEVEVNHTGEI--DEIFDAISYRKGASVIRMLQNYLG-AECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNK 315 (745)
Q Consensus 239 ~~p~~~~~~~~~~~--~~~f~~i~Y~Kg~~vl~mL~~~iG-~e~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~~~~~~~~ 315 (745)
++|+..++.+..++ +..|+.++|.||+++|+||+..+| ++.|+++|+.|+++|+|++++++|||++++++++.+++.
T Consensus 357 ~~p~~~~~~~~~~~~~~~~f~~i~Y~KGa~vL~mL~~~lG~~~~F~~~lr~Yl~~~~~~~~tt~Df~~~l~~~~~~~~~~ 436 (608)
T 3u9w_A 357 THPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDV 436 (608)
T ss_dssp TCGGGSSSCCCTTCCHHHHCSSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTEEECHHHHHHHHHHHTGGGHHH
T ss_pred CCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCH
T ss_conf 48754444565657804304687886899999999998389899999999999854679989899999999984624450
Q ss_pred H----HHHHHCCCCCCEEEEEEECC----EEEEEEEE
Q ss_conf 9----98843388953499997188----89999983
Q 004561 316 L----MNSWTKQKGYPVISVKVKEE----KLELEQSQ 344 (745)
Q Consensus 316 ~----~~~W~~q~G~P~i~v~~~~~----~i~i~Q~r 344 (745)
+ |++|++|+|||+++|+++.. .+.++|++
T Consensus 437 ~~~~~~~~W~~~~G~P~v~v~~d~~~~~~~~~l~q~~ 473 (608)
T 3u9w_A 437 LNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALSQRW 473 (608)
T ss_dssp HHTSCHHHHHHCCSSCSSCCCCCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEHHHHH
T ss_conf 5577899995679998346543345564315487688
Done!