Query 004562
Match_columns 745
No_of_seqs 269 out of 1980
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 18:51:40 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004562.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1863-1867//hhsearch_pdb/004562hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 1.0 1 1 481.0 52.0 508 19-722 65-583 (802)
2 2z86_A Chondroitin synthase; G 1.0 1 1 167.6 18.2 212 93-484 91-338 (625)
3 1xhb_A Polypeptide N-acetylgal 1.0 1 1 158.9 16.6 239 91-507 25-301 (472)
4 2d7i_A Polypeptide N-acetylgal 1.0 1 1 156.2 13.6 240 91-506 108-378 (570)
5 2z86_A Chondroitin synthase; G 1.0 1 1 154.5 12.5 222 92-499 372-598 (625)
6 2ffu_A Ppgalnact-2, polypeptid 1.0 1 1 154.0 10.4 201 91-468 62-284 (501)
7 1qg8_A Protein (spore coat pol 1.0 1 1 149.8 7.2 218 95-494 1-235 (255)
8 3l7i_A Teichoic acid biosynthe 1.0 1 1 147.7 0.0 199 95-473 2-204 (729)
9 3bcv_A Putative glycosyltransf 1.0 1 1 146.2 13.9 198 93-468 3-219 (240)
10 3ckj_A Putative uncharacterize 1.0 1 1 136.8 12.4 227 92-495 45-292 (329)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=1.00 E-value=1 Score=481.00 Aligned_cols=508 Identities=20% Similarity=0.287 Sum_probs=379.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 8899999999999999997551035666-520358999999999999999999998732216556789999999999916
Q 004562 19 LNKLHAFLHCIAIALLIYYRASYLLQET-RAISIIPWLLVFASELLLSFIWLLGRAYLWRPVSRTVFPERLPEDDKLPAI 97 (745)
Q Consensus 19 ~~r~~~~~~~~~~~~yl~wR~~~~~~~~-~~~~~~~w~~~~~aE~~~~~~~~l~~~~~~~p~~r~~~~~~l~~~~~~P~V 97 (745)
+..+++.+.+++.+.|++||++.+++.. .+.+.++++.++++|+++.+.+++..+..++|..|...++. .+++.|.|
T Consensus 65 ~~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~~--~~~~~P~V 142 (802)
T 4hg6_A 65 PRFLLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRPL--QPEELPTV 142 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCCC--CTTTCCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCCCE
T ss_conf 5789999999999999999866006775305899999999999999999999999998365678888989--85679848
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99981699999965899999999871999999608999829999000676899887410013466530554579533433
Q 004562 98 DVFICTADPEKEPTFGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLRGMREAFRFAKWWIPFCRRYRIKTICPQAYFS 177 (745)
Q Consensus 98 dV~V~t~~~ynEp~~~v~~Tv~s~~~ldYP~~kl~v~V~DDg~s~~T~~~l~Ea~~fa~~wvpfcr~~~v~~r~p~~yf~ 177 (745)
+|+||| |||+++++.+|+.|+++++||.++++|+|+|||++|.|.+.
T Consensus 143 SViIPt---yNe~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~------------------------------ 189 (802)
T 4hg6_A 143 DILVPS---YNEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMS------------------------------ 189 (802)
T ss_dssp EEEEEC---TTCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTC------------------------------
T ss_pred EEEEEE---CCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCC------------------------------
T ss_conf 999997---99989999999999984669998289999989987642234------------------------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHCCCCCCCEEEEEECC
Q ss_conf 34456678980427999999999999999998865228878778895413221037997202220012576608999546
Q 004562 178 EAESDENFGDSEFVTEKRKIKEKYEMFEEQVMKAVEDGEYGNSRNHSTIIEIIQDTSGENETIRQADLVEMPLLVYVSRE 257 (745)
Q Consensus 178 ~~~~~~~~~~~~~~~e~~~ik~~y~~l~~ri~~~~~~~~~~~~~~h~~~~~v~~~~~~~~~~~~~~~~~~~P~l~Yi~R~ 257 (745)
.+++.+++..+..+..+++..+ .++.|+.|+
T Consensus 190 --------~d~~i~~~~~~~~~~l~~~~~~-----------------------------------------~~v~~i~~~ 220 (802)
T 4hg6_A 190 --------PDPELAQKAQERRRELQQLCRE-----------------------------------------LGVVYSTRE 220 (802)
T ss_dssp --------SSHHHHHHHHHHHHHHHHHHHH-----------------------------------------HTCEEEECS
T ss_pred --------CCHHHHHHHHHHHHHHHHHHHH-----------------------------------------CCCEEEEEC
T ss_conf --------8878999988666999999985-----------------------------------------694799926
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHC-CCCCCCCEEEECCCCCCCCCCCC---
Q ss_conf 79998889969999999986398789888999589989896079999997622-99999947898277110258966---
Q 004562 258 KSPEHLHHFKGGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHL-DPKTSSSLAFVQFPQKFHNFNEH--- 333 (745)
Q Consensus 258 k~p~~~~~~KAGaLN~~l~~s~~~t~g~~Il~lDAD~~~~~p~~L~~~l~~f~-D~~~~~~vg~VQ~Pq~f~n~~~~--- 333 (745)
++ +++|++|+|.+++. ++||||+++|||++++ |+++++++..|. ||+ ++.||+++.+.|.+..
T Consensus 221 ~~----~~GKa~alN~gl~~----a~gd~Il~lDaD~~~~-pd~L~~lv~~~~~dp~----v~~V~~~~~~~~~~~~~~~ 287 (802)
T 4hg6_A 221 RN----EHAKAGNMSAALER----LKGELVVVFDADHVPS-RDFLARTVGYFVEDPD----LFLVQTPHFFINPDPIQRN 287 (802)
T ss_dssp SC----CSHHHHHHHHHHHH----CCCSEEEECCTTEEEC-TTHHHHHHHHHHHSSS----CCEEECCCCBSSCCHHHHH
T ss_pred CC----CCCCHHHHHHHHHH----CCCCEEEEECCCCCCC-HHHHHHHHHHHHCCCC----EEEEECCEEEECCCHHHHH
T ss_conf 88----77636899999996----5999999999998818-5899999999840998----5999656797678557654
Q ss_pred ----CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCC
Q ss_conf ----7078779874342685642149953334420021331067754466535766643077246786543210134467
Q 004562 334 ----DIYDGSLRSGYRLQWPGMDGLKGPFLTGTGHYIRRESLYGNFKHKGIDLAELKDTFGESNLFIKSLHQSYEHKNVN 409 (745)
Q Consensus 334 ----d~~~~~~~~f~~~~~~g~d~~~~~~~~Gtg~~~RR~AL~~~~~~~~~d~~~~~~~~~~~~~~v~s~~~~~~~~~~~ 409 (745)
+.+.++...++...+.+.+.+++++++|+++++||+++.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~------------------------------------- 330 (802)
T 4hg6_A 288 LALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAAVLRRRALD------------------------------------- 330 (802)
T ss_dssp HTCCTTSCCTTHHHHHTHHHHHHHTTCCCCCSSSEEEEHHHHH-------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHH-------------------------------------
T ss_conf 4477651678999988887547643884542664032499999-------------------------------------
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 76501457874221114200012454410123699965319999999987976999199988067314879678876767
Q 004562 410 GENLSNVLQQETEVLASCSYEHQTKWGEEVGFSYQSVSEDFFTGFILHCKGWTSTYLDPSRPQFLGTSTTNLNDVLIQGT 489 (745)
Q Consensus 410 ~~~~~~~~~~~~~~v~~c~ye~~~~wg~~~G~~~~sitED~~ts~rl~~~Gwrs~y~~~~~~~~~g~aP~~l~~~l~Qr~ 489 (745)
+.+||++++++||.+++++++++||++.|+++ +.+++.+|+++.++++||.
T Consensus 331 ---------------------------~vGgf~~~~~~ED~~l~~rl~~~G~ri~~~~~--~~~~~~~p~t~~~~~~Qr~ 381 (802)
T 4hg6_A 331 ---------------------------EAGGFAGETITEDAETALEIHSRGWKSLYIDR--AMIAGLQPETFASFIQQRG 381 (802)
T ss_dssp ---------------------------HHTTCCCSSSSHHHHHHHHHHTTTCCEEECCC--CCEEECCCCSHHHHHHHHH
T ss_pred ---------------------------HCCCCCCCCCCHHHHHHHHHHHCCCEEEEECC--CEEEECCCCCHHHHHHHHH
T ss_conf ---------------------------70886788803099999999976995999368--8799668889999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 74326531000114866448988775578888777475686689999999986898850998654300013577775247
Q 004562 490 RWASGLIDVSISRFCPLLYGPSRMSLLLSMCYGEMSLFPLLYCLPLWCFATLPQLCLLNGIPLYPETIVFSLLPQVSSPF 569 (745)
Q Consensus 490 RWa~G~~qil~~~~~p~~~~~~~l~~~qrl~Y~~~~~~~~l~~~~~l~y~~~P~~~Ll~g~~~~~~~~~~~~~~~~~~~~ 569 (745)
||++|.+|+++. ++|++. +++++.||++|+....++ +.+++.++++++|++++++|++++.. ....+
T Consensus 382 RW~~G~~q~l~~-~~pl~~--~~l~~~~rl~~l~~~~~~-~~~~~~li~ll~p~~~ll~~~~~~~~---------~~~~~ 448 (802)
T 4hg6_A 382 RWATGMMQMLLL-KNPLFR--RGLGIAQRLCYLNSMSFW-FFPLVRMMFLVAPLIYLFFGIEIFVA---------TFEEV 448 (802)
T ss_dssp HHHHHHHHHHHH-SCTTSC--SSCCHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHCCCCSCC---------CHHHH
T ss_pred HHHCCHHHHHHH-HCCCCC--CCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHH
T ss_conf 997008999988-592346--899899999999999999-99999999999999999996787633---------89999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHCCC
Q ss_conf 9999999999999999999-880962022000135577676789999999999999748788824287887400101012
Q 004562 570 FMVFSFIFLSAICKHLQEV-ISTGGSVYTWRNEQRIWMIKSVTSHFYGSMDAIMKLLGLRKASFLPTNKVLDNEQVKRYE 648 (745)
Q Consensus 570 f~~~~~~~~~~~~~~ll~~-~~~g~~~~~ww~~~~~w~i~~~~~~~~~~~~a~l~~l~~~~~~F~VT~K~~~~~~~~~~~ 648 (745)
+. .++++.+...+.. ...+.....||+... .+...++.+...+..++++++.+|+||+|+.+.+..
T Consensus 449 ~~----~~lp~~l~~~~~~~~~~~~~r~~~~~~l~-----~~~~~~~~~~a~l~~l~~~~~~~f~VT~Kg~~~~~~---- 515 (802)
T 4hg6_A 449 LA----YMPGYLAVSFLVQNALFARQRWPLVSEVY-----EVAQAPYLARAIVTTLLRPRSARFAVTAKDETLSEN---- 515 (802)
T ss_dssp HH----HHHHHHHHHHHHHHHHHTTTSCTTHHHHH-----HHHHHHHHHHHHHHHHHSTTCCCCCCCCCCCCCSSC----
T ss_pred HH----HHHHHHHHHHHHHHHHHCCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCC----
T ss_conf 99----99999999999999995674799999999-----999999999999999918889820277997656653----
Q ss_pred CCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 56101024412378999999999999999987664048-814899999999999999999999986103889876
Q 004562 649 MGQFDFQTSSVFLVPMVSLMILNVAALVCGVIRMIAVG-NWDKLFAQVLLSLYILIINFAIVEGMIVRKDKGRIS 722 (745)
Q Consensus 649 ~~~f~f~~~~~l~~P~~~l~~l~l~al~~g~~~~~~~~-~~~~~~~~~~~~~~~l~~l~p~~~~l~~r~~k~~~p 722 (745)
. .+.+.+|++++++++++++++|++++.... .......+++|++++++.+.+.+...+-|+.+++-|
T Consensus 516 --~-----~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~~l~~~~~~~~~~~~~R~~~ 583 (802)
T 4hg6_A 516 --Y-----ISPIYRPLLFTFLLCLSGVLATLVRWVAFPGDRSVLLVVGGWAVLNVLLVGFALRAVAEKQQRRAAP 583 (802)
T ss_dssp --C-----BCTTCHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTTBCCCCSCCCC
T ss_pred --C-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf --1-----2268999999999999999999999960677634200115999999999999999974588766565
No 2
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=1.00 E-value=1 Score=167.56 Aligned_cols=212 Identities=17% Similarity=0.122 Sum_probs=143.5
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99916999816999999658999999998719999996089998299990006768998874100134665305545795
Q 004562 93 KLPAIDVFICTADPEKEPTFGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLRGMREAFRFAKWWIPFCRRYRIKTICP 172 (745)
Q Consensus 93 ~~P~VdV~V~t~~~ynEp~~~v~~Tv~s~~~ldYP~~kl~v~V~DDg~s~~T~~~l~Ea~~fa~~wvpfcr~~~v~~r~p 172 (745)
..|.|+|+||| |||+ +.+.+|+.|+.+++||. .++|+|+|||++|.|.+.+.+.
T Consensus 91 ~~p~vsviIp~---~n~~-~~l~~~l~sl~~q~~~~-~~eiivvDd~s~d~t~~~~~~~--------------------- 144 (625)
T 2z86_A 91 IIDGLSIVIPT---YNRA-KILAITLACLCNQKTIY-DYEVIVADDGSKENIEEIVREF--------------------- 144 (625)
T ss_dssp CCCCEEEEEEE---SSCH-HHHHHHHHHHHTCCCSS-CEEEEEEEESCSSCHHHHHHTT---------------------
T ss_pred CCCCEEEEEEC---CCCH-HHHHHHHHHHHHHCCCC-CEEEEEEECCCCHHHHHHHHHH---------------------
T ss_conf 69827999903---8857-88999999998436579-8699999679832079999985---------------------
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHCCCCCCCEEE
Q ss_conf 33433344566789804279999999999999999988652288787788954132210379972022200125766089
Q 004562 173 QAYFSEAESDENFGDSEFVTEKRKIKEKYEMFEEQVMKAVEDGEYGNSRNHSTIIEIIQDTSGENETIRQADLVEMPLLV 252 (745)
Q Consensus 173 ~~yf~~~~~~~~~~~~~~~~e~~~ik~~y~~l~~ri~~~~~~~~~~~~~~h~~~~~v~~~~~~~~~~~~~~~~~~~P~l~ 252 (745)
...+++.
T Consensus 145 -------------------------------------------------------------------------~~~~~i~ 151 (625)
T 2z86_A 145 -------------------------------------------------------------------------ESLLNIK 151 (625)
T ss_dssp -------------------------------------------------------------------------TTTSCEE
T ss_pred -------------------------------------------------------------------------HHCCCEE
T ss_conf -------------------------------------------------------------------------6317829
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHC-CCCCCCCEEEECCCCCCCCCC
Q ss_conf 9954679998889969999999986398789888999589989896079999997622-999999478982771102589
Q 004562 253 YVSREKSPEHLHHFKGGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHL-DPKTSSSLAFVQFPQKFHNFN 331 (745)
Q Consensus 253 Yi~R~k~p~~~~~~KAGaLN~~l~~s~~~t~g~~Il~lDAD~~~~~p~~L~~~l~~f~-D~~~~~~vg~VQ~Pq~f~n~~ 331 (745)
|+.++++ .++|++|+|.|++. ++||+|+++|+|+.+. |++|..++..|. ++. ++.|+..+.+.+..
T Consensus 152 ~i~~~~~----~~g~~~a~N~g~~~----a~g~~v~~lD~D~~~~-~~~l~~~~~~~~~~~~----~~~~g~~~~~~~~~ 218 (625)
T 2z86_A 152 YVRQKDY----GYQLCAVRNLGLRA----AKYNYVAILDCDMAPN-PLWVQSYMELLAVDDN----VALIGPRKYIDTSK 218 (625)
T ss_dssp EEEECCC----SCCHHHHHHHHHHH----CCSSEEEEECTTEEEC-TTHHHHHHHHHHHCTT----EEEECCEEEECCTT
T ss_pred EEEECCC----CCCHHHHHHHHHHH----CCCCEEEEECCCCCCC-HHHHHHHHHHHHCCCC----EEEEEEEEECCCCC
T ss_conf 9986787----74306899999986----8847899978987779-7999999999855986----39998556516742
Q ss_pred CCCHHHHHH--HHHHHH--------------------------HHH--HHHHCC--CCCCCCCCCCHHHHHCCCCCCCCC
Q ss_conf 667078779--874342--------------------------685--642149--953334420021331067754466
Q 004562 332 EHDIYDGSL--RSGYRL--------------------------QWP--GMDGLK--GPFLTGTGHYIRRESLYGNFKHKG 379 (745)
Q Consensus 332 ~~d~~~~~~--~~f~~~--------------------------~~~--g~d~~~--~~~~~Gtg~~~RR~AL~~~~~~~~ 379 (745)
. .+.... ..+... ... ...... ...++|++.++||+++.
T Consensus 219 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~l~------- 289 (625)
T 2z86_A 219 H--TYLDFLSQKSLINEIPEIITNNQVAGKVEQNKSVDWRIEHFKNTDNLRLCNTPFRFFSGGNVAFAKKWLF------- 289 (625)
T ss_dssp C--CHHHHHHSTTGGGTSCC---------------CCCTHHHHHHHTTTTTTCSCGGGGCCTTEEEEETHHHH-------
T ss_pred C--CHHHCCCCHHHHHHCCHHCCCCCHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCEEEEEECEEEEEHHHHH-------
T ss_conf 2--1222046467766340120577311333247764500343203431013677525885022555789999-------
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC---CCHHHHHHHH
Q ss_conf 5357666430772467865432101344677650145787422111420001245441012369996---5319999999
Q 004562 380 IDLAELKDTFGESNLFIKSLHQSYEHKNVNGENLSNVLQQETEVLASCSYEHQTKWGEEVGFSYQSV---SEDFFTGFIL 456 (745)
Q Consensus 380 ~d~~~~~~~~~~~~~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~c~ye~~~~wg~~~G~~~~si---tED~~ts~rl 456 (745)
+.|||++... .||.++++|+
T Consensus 290 ---------------------------------------------------------~iGgfde~~~~~g~ED~dl~~Rl 312 (625)
T 2z86_A 290 ---------------------------------------------------------RAGWFDEEFTHWGGEDNEFGYRL 312 (625)
T ss_dssp ---------------------------------------------------------HHCCCCTTCSSCCCHHHHHHHHH
T ss_pred ---------------------------------------------------------HHCCCCCCCCCCCCCHHHHHHHH
T ss_conf ---------------------------------------------------------70788630342784232565418
Q ss_pred HHCCCEEEEECCCCCEEEECCCCCHHHH
Q ss_conf 9879769991999880673148796788
Q 004562 457 HCKGWTSTYLDPSRPQFLGTSTTNLNDV 484 (745)
Q Consensus 457 ~~~Gwrs~y~~~~~~~~~g~aP~~l~~~ 484 (745)
+.+||+..|+++ +.++...|.+-...
T Consensus 313 ~~~G~~i~~~p~--~~v~H~~~~~~~~~ 338 (625)
T 2z86_A 313 YREGCYFRSVEG--AMAYHQEPPGKENE 338 (625)
T ss_dssp HHTTCEEEECGG--GCEEEECCC-----
T ss_pred HHCCCEEEECCC--CHHHCCCCCCCCCH
T ss_conf 757963997440--02120578421225
No 3
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=1.00 E-value=1 Score=158.86 Aligned_cols=239 Identities=15% Similarity=0.090 Sum_probs=153.3
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC-CHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999169998169999996589999999987199999960899982999900-06768998874100134665305545
Q 004562 91 DDKLPAIDVFICTADPEKEPTFGVMNTVLSAMALDYPVDKLHVYLSDDGGSPI-TLRGMREAFRFAKWWIPFCRRYRIKT 169 (745)
Q Consensus 91 ~~~~P~VdV~V~t~~~ynEp~~~v~~Tv~s~~~ldYP~~kl~v~V~DDg~s~~-T~~~l~Ea~~fa~~wvpfcr~~~v~~ 169 (745)
+++.|.|+|+||+ |||+.+.+.+|+.|+++++||...++|+|+|||++|. |.+.+.+.+
T Consensus 25 ~~~~p~vSVIIp~---yN~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~----------------- 84 (472)
T 1xhb_A 25 PDNLPTTSVVIVF---HNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYV----------------- 84 (472)
T ss_dssp CSCCCCEEEEEEE---SSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHH-----------------
T ss_pred CCCCCCEEEEEEE---CCCCHHHHHHHHHHHHHCCCHHHCEEEEEEECCCCCHHHHHHHHHHH-----------------
T ss_conf 8679975999996---78878999999999986595767607999977999678999999999-----------------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHCCCCCCC
Q ss_conf 79533433344566789804279999999999999999988652288787788954132210379972022200125766
Q 004562 170 ICPQAYFSEAESDENFGDSEFVTEKRKIKEKYEMFEEQVMKAVEDGEYGNSRNHSTIIEIIQDTSGENETIRQADLVEMP 249 (745)
Q Consensus 170 r~p~~yf~~~~~~~~~~~~~~~~e~~~ik~~y~~l~~ri~~~~~~~~~~~~~~h~~~~~v~~~~~~~~~~~~~~~~~~~P 249 (745)
...|
T Consensus 85 ----------------------------------------------------------------------------~~~~ 88 (472)
T 1xhb_A 85 ----------------------------------------------------------------------------KKLK 88 (472)
T ss_dssp ----------------------------------------------------------------------------HSSS
T ss_pred ----------------------------------------------------------------------------HHCC
T ss_conf ----------------------------------------------------------------------------8779
Q ss_pred -EEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHC-CCCCCCCEEEECCCCCC
Q ss_conf -0899954679998889969999999986398789888999589989896079999997622-99999947898277110
Q 004562 250 -LLVYVSREKSPEHLHHFKGGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHL-DPKTSSSLAFVQFPQKF 327 (745)
Q Consensus 250 -~l~Yi~R~k~p~~~~~~KAGaLN~~l~~s~~~t~g~~Il~lDAD~~~~~p~~L~~~l~~f~-D~~~~~~vg~VQ~Pq~f 327 (745)
++.++..++ +.++++|+|.|++. +.||+|+++|+|..++ |++|..++..+. ++. ++.+. ....
T Consensus 89 ~~v~vi~~~~-----n~G~~~a~N~g~~~----A~gd~i~flD~D~~~~-p~~L~~ll~~~~~~~~----~~v~~-~~~~ 153 (472)
T 1xhb_A 89 VPVHVIRMEQ-----RSGLIRARLKGAAV----SRGQVITFLDAHCECT-AGWLEPLLARIKHDRR----TVVCP-IIDV 153 (472)
T ss_dssp SCEEEEECSS-----CCCHHHHHHHHHHH----CCSSEEEEEESSEEEC-TTCHHHHHHHHHHCTT----EEEEE-EEEE
T ss_pred CCEEEEECCC-----CCCHHHHHHHHHHH----CCCCEEEEECCCEEEC-CCHHHHHHHHHHHCCC----EEEEE-EEEE
T ss_conf 8579998898-----78769999999986----1587699988985767-3479999999983997----79992-2531
Q ss_pred CCCCCCC------HHHHH--HHHHHHH------HHHHH--H---HCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 2589667------07877--9874342------68564--2---149953334420021331067754466535766643
Q 004562 328 HNFNEHD------IYDGS--LRSGYRL------QWPGM--D---GLKGPFLTGTGHYIRRESLYGNFKHKGIDLAELKDT 388 (745)
Q Consensus 328 ~n~~~~d------~~~~~--~~~f~~~------~~~g~--d---~~~~~~~~Gtg~~~RR~AL~~~~~~~~~d~~~~~~~ 388 (745)
.+.+... ..... ....+.. ....+ + ....+...|.+.++||+++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~---------------- 217 (472)
T 1xhb_A 154 ISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQ---------------- 217 (472)
T ss_dssp ECSSSCCEECCCTTEEEEECTTCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHHHHH----------------
T ss_pred ECCCCCEECCCCCCCCCEEECCCEEECCCCCHHHHHCCCCCCCCCCCCCCCCCEEEEEEHHHHH----------------
T ss_conf 7687743215787503233025513315589788730348877764685105445778999999----------------
Q ss_pred HCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC---CCHHHHHHHHHHCCCEEEE
Q ss_conf 0772467865432101344677650145787422111420001245441012369996---5319999999987976999
Q 004562 389 FGESNLFIKSLHQSYEHKNVNGENLSNVLQQETEVLASCSYEHQTKWGEEVGFSYQSV---SEDFFTGFILHCKGWTSTY 465 (745)
Q Consensus 389 ~~~~~~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~c~ye~~~~wg~~~G~~~~si---tED~~ts~rl~~~Gwrs~y 465 (745)
+.+||+++.. .||.+.++|+...|++..+
T Consensus 218 ------------------------------------------------~iGgfde~~~~~g~ED~dl~~R~~~~G~~i~~ 249 (472)
T 1xhb_A 218 ------------------------------------------------EIGTYDAGMDIWGGENLEISFRIWQCGGTLEI 249 (472)
T ss_dssp ------------------------------------------------HTTSCCTTSCTTCCCCSHHHHHHHHTTCEEEE
T ss_pred ------------------------------------------------HCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf ------------------------------------------------72899976646685058898999856975998
Q ss_pred ECCCCCEEE----ECCCC----C-----HHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 199988067----31487----9-----678876767743265310001148664
Q 004562 466 LDPSRPQFL----GTSTT----N-----LNDVLIQGTRWASGLIDVSISRFCPLL 507 (745)
Q Consensus 466 ~~~~~~~~~----g~aP~----~-----l~~~l~Qr~RWa~G~~qil~~~~~p~~ 507 (745)
++.. ... ...|. . .....+...+|..+..+.++. .+|..
T Consensus 250 ~p~~--~v~H~~~~~~~~~~~~~~~~~~~~n~~r~~~~W~d~~~~~~~~-~~p~~ 301 (472)
T 1xhb_A 250 VTCS--HVGHVFRKATPYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYI-ISPGV 301 (472)
T ss_dssp EEEE--EEEEEC------------CHHHHHHHHHHHHHHCGGGGHHHHH-TSTTG
T ss_pred CCCC--EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCC
T ss_conf 3573--8999815868887885323578888899999988999998875-09443
No 4
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=1.00 E-value=1 Score=156.23 Aligned_cols=240 Identities=15% Similarity=0.082 Sum_probs=151.9
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC-HHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999991699981699999965899999999871999999608999829999000-6768998874100134665305545
Q 004562 91 DDKLPAIDVFICTADPEKEPTFGVMNTVLSAMALDYPVDKLHVYLSDDGGSPIT-LRGMREAFRFAKWWIPFCRRYRIKT 169 (745)
Q Consensus 91 ~~~~P~VdV~V~t~~~ynEp~~~v~~Tv~s~~~ldYP~~kl~v~V~DDg~s~~T-~~~l~Ea~~fa~~wvpfcr~~~v~~ 169 (745)
.+..|.|+|+||+ |||+.+.+.+||.|++++.||...++|+|+|||++|.| .+.+.+.+
T Consensus 108 ~~~~P~vSVIIp~---yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~----------------- 167 (570)
T 2d7i_A 108 LETLPNTSIIIPF---HNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYM----------------- 167 (570)
T ss_dssp ESSCCCEEEEEEE---SSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHH-----------------
T ss_pred CCCCCCEEEEEEE---CCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHH-----------------
T ss_conf 8889975999997---89878999999999983587457679999989998378899999999-----------------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHCCCCCCC
Q ss_conf 79533433344566789804279999999999999999988652288787788954132210379972022200125766
Q 004562 170 ICPQAYFSEAESDENFGDSEFVTEKRKIKEKYEMFEEQVMKAVEDGEYGNSRNHSTIIEIIQDTSGENETIRQADLVEMP 249 (745)
Q Consensus 170 r~p~~yf~~~~~~~~~~~~~~~~e~~~ik~~y~~l~~ri~~~~~~~~~~~~~~h~~~~~v~~~~~~~~~~~~~~~~~~~P 249 (745)
...|
T Consensus 168 ----------------------------------------------------------------------------~~~~ 171 (570)
T 2d7i_A 168 ----------------------------------------------------------------------------ALFP 171 (570)
T ss_dssp ----------------------------------------------------------------------------TTST
T ss_pred ----------------------------------------------------------------------------HHCC
T ss_conf ----------------------------------------------------------------------------7478
Q ss_pred EEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCC
Q ss_conf 08999546799988899699999999863987898889995899898960799999976229999994789827711025
Q 004562 250 LLVYVSREKSPEHLHHFKGGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKTSSSLAFVQFPQKFHN 329 (745)
Q Consensus 250 ~l~Yi~R~k~p~~~~~~KAGaLN~~l~~s~~~t~g~~Il~lDAD~~~~~p~~L~~~l~~f~D~~~~~~vg~VQ~Pq~f~n 329 (745)
++.++..++ +.++++|+|.|++. ++||+|+++|+|..+. |++|..++..+.+.. ++ .|.....+.+
T Consensus 172 ~v~vi~~~~-----n~G~~~A~N~G~~~----A~gd~i~fLD~D~~~~-p~~L~~ll~~l~~~~---~~-vv~~~i~~~~ 237 (570)
T 2d7i_A 172 SVRILRTKK-----REGLIRTRMLGASV----ATGDVITFLDSHCEAN-VNWLPPLLDRIARNR---KT-IVCPMIDVID 237 (570)
T ss_dssp TEEEEECSS-----CCCHHHHHHHHHHH----CCSSEEEECCSSEEEC-TTCSHHHHHHHHHCT---TE-EEEEEEEEEC
T ss_pred EEEEEECCC-----CCCHHHHHHHHHHH----CCCCEEEEECCCCCCC-CCHHHHHHHHHHHCC---CE-EEEEEEECCC
T ss_conf 089998998-----87989999999986----6788899975985224-038999999998489---77-9860030227
Q ss_pred CCCC-------CHHHH--HHHHHHHHHHHH--------HHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 8966-------70787--798743426856--------421499533344200213310677544665357666430772
Q 004562 330 FNEH-------DIYDG--SLRSGYRLQWPG--------MDGLKGPFLTGTGHYIRRESLYGNFKHKGIDLAELKDTFGES 392 (745)
Q Consensus 330 ~~~~-------d~~~~--~~~~f~~~~~~g--------~d~~~~~~~~Gtg~~~RR~AL~~~~~~~~~d~~~~~~~~~~~ 392 (745)
.+.. ..... .....+...... ......+...|.+.++||+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~-------------------- 297 (570)
T 2d7i_A 238 HDDFRYETQAGDAMRGAFDWEMYYKRIPIPPELQKADPSDPFESPVMAGGLFAVDRKWFW-------------------- 297 (570)
T ss_dssp TTTCCEECCTTSSCEEEECTTCCEEEECCCTTTCCSSTTSCEECSSCCSSSEEEEHHHHH--------------------
T ss_pred CCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEECCCCCCEEEEEEHHHHH--------------------
T ss_conf 875422156677655414543310204565445403777526545535368999999998--------------------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC---CCHHHHHHHHHHCCCEEEEECCC
Q ss_conf 467865432101344677650145787422111420001245441012369996---53199999999879769991999
Q 004562 393 NLFIKSLHQSYEHKNVNGENLSNVLQQETEVLASCSYEHQTKWGEEVGFSYQSV---SEDFFTGFILHCKGWTSTYLDPS 469 (745)
Q Consensus 393 ~~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~c~ye~~~~wg~~~G~~~~si---tED~~ts~rl~~~Gwrs~y~~~~ 469 (745)
+.+||+++.. .||+++++|+..+||+.+|++..
T Consensus 298 --------------------------------------------~iGgfDe~~~~~g~ED~dl~~Rl~~~G~~i~~~p~~ 333 (570)
T 2d7i_A 298 --------------------------------------------ELGGYDPGLEIWGGEQYEISFKVWMCGGRMEDIPCS 333 (570)
T ss_dssp --------------------------------------------HTTSSCTTCCSSSSHHHHHHHHHHHTTCEEEEEEEE
T ss_pred --------------------------------------------HCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCE
T ss_conf --------------------------------------------658988766556711389999998579849973672
Q ss_pred CCEEE---ECCCCC-------HHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 88067---314879-------67887676774326531000114866
Q 004562 470 RPQFL---GTSTTN-------LNDVLIQGTRWASGLIDVSISRFCPL 506 (745)
Q Consensus 470 ~~~~~---g~aP~~-------l~~~l~Qr~RWa~G~~qil~~~~~p~ 506 (745)
. +.. +..|.+ .....+...+|.....+.+..+ +|.
T Consensus 334 ~-v~H~~r~~~~~~~~~~~~~~~n~~r~~~~W~d~~~~~~y~~-~p~ 378 (570)
T 2d7i_A 334 R-VGHIYRKYVPYKVPAGVSLARNLKRVAEVWMDEYAEYIYQR-RPE 378 (570)
T ss_dssp E-EEECCCSSCCSCCCSSCCHHHHHHHHHHHHCGGGHHHHHTT-CGG
T ss_pred E-EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCC
T ss_conf 8-99973366898887401667778999999889999999751-921
No 5
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=1.00 E-value=1 Score=154.47 Aligned_cols=222 Identities=19% Similarity=0.212 Sum_probs=153.1
Q ss_pred CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99991699981699999965899999999871999999608999829999000676899887410013466530554579
Q 004562 92 DKLPAIDVFICTADPEKEPTFGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLRGMREAFRFAKWWIPFCRRYRIKTIC 171 (745)
Q Consensus 92 ~~~P~VdV~V~t~~~ynEp~~~v~~Tv~s~~~ldYP~~kl~v~V~DDg~s~~T~~~l~Ea~~fa~~wvpfcr~~~v~~r~ 171 (745)
...|.|+|+||| ||++ ..+.+|+.|+++++||. ++|+|+|||++|.|.+.+.+..
T Consensus 372 ~~~~~vsiii~~---yn~~-~~l~~~l~s~~~q~~~~--~eiivvdd~S~d~t~~~~~~~~------------------- 426 (625)
T 2z86_A 372 KRVPLVSIYIPA---YNCS-KYIVRCVESALNQTITD--LEVCICDDGSTDDTLRILQEHY------------------- 426 (625)
T ss_dssp CSSCSEEEEEEE---SSCT-TTHHHHHHHHHSSSCCS--EEEEEEEESCSSSHHHHHHHHH-------------------
T ss_pred CCCCEEEEEEEC---CCCH-HHHHHHHHHHHHCCCCC--EEEEEEECCCCHHHHHHHHHHH-------------------
T ss_conf 359717999957---8988-99999999998176998--2899998969864999999988-------------------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHCCCCCCCEE
Q ss_conf 53343334456678980427999999999999999998865228878778895413221037997202220012576608
Q 004562 172 PQAYFSEAESDENFGDSEFVTEKRKIKEKYEMFEEQVMKAVEDGEYGNSRNHSTIIEIIQDTSGENETIRQADLVEMPLL 251 (745)
Q Consensus 172 p~~yf~~~~~~~~~~~~~~~~e~~~ik~~y~~l~~ri~~~~~~~~~~~~~~h~~~~~v~~~~~~~~~~~~~~~~~~~P~l 251 (745)
...|++
T Consensus 427 --------------------------------------------------------------------------~~~~~i 432 (625)
T 2z86_A 427 --------------------------------------------------------------------------ANHPRV 432 (625)
T ss_dssp --------------------------------------------------------------------------TTCTTE
T ss_pred --------------------------------------------------------------------------HHCCCE
T ss_conf --------------------------------------------------------------------------549938
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHC-CCCCCCCEEEECCCCCCCCC
Q ss_conf 99954679998889969999999986398789888999589989896079999997622-99999947898277110258
Q 004562 252 VYVSREKSPEHLHHFKGGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHL-DPKTSSSLAFVQFPQKFHNF 330 (745)
Q Consensus 252 ~Yi~R~k~p~~~~~~KAGaLN~~l~~s~~~t~g~~Il~lDAD~~~~~p~~L~~~l~~f~-D~~~~~~vg~VQ~Pq~f~n~ 330 (745)
.++. ++ +.++++|+|.|++. ++||||+++|+|.++. |++|..++..|. +++ ++.|.+.....+.
T Consensus 433 ~~~~-~~-----n~G~~~a~n~g~~~----a~g~~i~~ld~D~~~~-~~~l~~~~~~~~~~~~----~~~v~~~~~~~~~ 497 (625)
T 2z86_A 433 RFIS-QK-----NKGIGSASNTAVRL----CRGFYIGQLDSDDFLE-PDAVELCLDEFRKDLS----LACVYTTNRNIDR 497 (625)
T ss_dssp EEEE-EC-----CCCHHHHHHHHHHH----CCSSEEEECCTTCEEC-TTHHHHHHHHHHHCTT----CSEEEEEEEEECT
T ss_pred EEEE-CC-----CCCHHHHHHHHHHH----CCCCEEEEECCCCCCC-HHHHHHHHHHHHHCCC----EEEEEEEEEEECC
T ss_conf 9991-79-----88989999999985----6778799988976628-3599999999984798----1399820489879
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 96670787798743426856421499533344200213310677544665357666430772467865432101344677
Q 004562 331 NEHDIYDGSLRSGYRLQWPGMDGLKGPFLTGTGHYIRRESLYGNFKHKGIDLAELKDTFGESNLFIKSLHQSYEHKNVNG 410 (745)
Q Consensus 331 ~~~d~~~~~~~~f~~~~~~g~d~~~~~~~~Gtg~~~RR~AL~~~~~~~~~d~~~~~~~~~~~~~~v~s~~~~~~~~~~~~ 410 (745)
+.. ..... +.......+......++|++.++||+++.
T Consensus 498 ~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-------------------------------------- 534 (625)
T 2z86_A 498 EGN-LISNG----YNWPIYSREKLTSAMICHHFRMFTARAWN-------------------------------------- 534 (625)
T ss_dssp TSC-EEEEC----CCCSSCCHHHHTTSCCCCSCEEEEHHHHT--------------------------------------
T ss_pred CCC-EECCC----CCCCCCCHHHHHHCCCCCCEEEEEHHHHH--------------------------------------
T ss_conf 998-74167----66665788898535467746898899999--------------------------------------
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHCCCEEEEECCCCCEEE---ECCCCCHHHHHH
Q ss_conf 6501457874221114200012454410123699-965319999999987976999199988067---314879678876
Q 004562 411 ENLSNVLQQETEVLASCSYEHQTKWGEEVGFSYQ-SVSEDFFTGFILHCKGWTSTYLDPSRPQFL---GTSTTNLNDVLI 486 (745)
Q Consensus 411 ~~~~~~~~~~~~~v~~c~ye~~~~wg~~~G~~~~-sitED~~ts~rl~~~Gwrs~y~~~~~~~~~---g~aP~~l~~~l~ 486 (745)
+.+||++. ...||.+..+|+...| +..|+++ +... .....+......
T Consensus 535 --------------------------~~ggfd~~~~~~eD~dl~~r~~~~g-~~~~~~~--~~~~~r~h~~~~s~~~~~~ 585 (625)
T 2z86_A 535 --------------------------LTEGFNESISNAVDYDMYLKLSEVG-PFKHINK--ICYNRVLHGENTSIKKLDI 585 (625)
T ss_dssp --------------------------TTTCCCSSCSSCHHHHHHHHHTTTS-CEEEEEE--EEEEEECC----CCSSHHH
T ss_pred --------------------------HHCCCCCCCCCHHHHHHHHHHHHHC-CEEEECC--CEEEEEECCCCCCHHHHHH
T ss_conf --------------------------7289997368727999999999749-9998287--6899998898652114899
Q ss_pred HHHHHHCCCCCCC
Q ss_conf 7677432653100
Q 004562 487 QGTRWASGLIDVS 499 (745)
Q Consensus 487 Qr~RWa~G~~qil 499 (745)
|+.+|.+...+.+
T Consensus 586 ~~~~~~~~~~~~l 598 (625)
T 2z86_A 586 QKENHFKVVNESL 598 (625)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
No 6
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=1.00 E-value=1 Score=153.96 Aligned_cols=201 Identities=14% Similarity=0.081 Sum_probs=133.6
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999169998169999996589999999987199999960899982999900067689988741001346653055457
Q 004562 91 DDKLPAIDVFICTADPEKEPTFGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLRGMREAFRFAKWWIPFCRRYRIKTI 170 (745)
Q Consensus 91 ~~~~P~VdV~V~t~~~ynEp~~~v~~Tv~s~~~ldYP~~kl~v~V~DDg~s~~T~~~l~Ea~~fa~~wvpfcr~~~v~~r 170 (745)
++..|.|+|+||+ |||+...+.+||.|++++.||...++|+|+|||++|.|...+.
T Consensus 62 ~~~~p~vSVIIp~---yN~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~~--------------------- 117 (501)
T 2ffu_A 62 RVDLPATSVVITF---HNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALL--------------------- 117 (501)
T ss_dssp CSSCCCEEEEEEE---SSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHGG---------------------
T ss_pred CCCCCCEEEEEEE---CCCCHHHHHHHHHHHHHHCCHHHCEEEEEEECCCCCHHHHHHH---------------------
T ss_conf 8679977999996---9686899999999998508663351499997899956789998---------------------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHCCCCCCCE
Q ss_conf 95334333445667898042799999999999999999886522887877889541322103799720222001257660
Q 004562 171 CPQAYFSEAESDENFGDSEFVTEKRKIKEKYEMFEEQVMKAVEDGEYGNSRNHSTIIEIIQDTSGENETIRQADLVEMPL 250 (745)
Q Consensus 171 ~p~~yf~~~~~~~~~~~~~~~~e~~~ik~~y~~l~~ri~~~~~~~~~~~~~~h~~~~~v~~~~~~~~~~~~~~~~~~~P~ 250 (745)
...|+
T Consensus 118 ---------------------------------------------------------------------------~~~~~ 122 (501)
T 2ffu_A 118 ---------------------------------------------------------------------------GKIEK 122 (501)
T ss_dssp ---------------------------------------------------------------------------GGBTT
T ss_pred ---------------------------------------------------------------------------HCCCC
T ss_conf ---------------------------------------------------------------------------41898
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCC
Q ss_conf 89995467999888996999999998639878988899958998989607999999762299999947898277110258
Q 004562 251 LVYVSREKSPEHLHHFKGGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKTSSSLAFVQFPQKFHNF 330 (745)
Q Consensus 251 l~Yi~R~k~p~~~~~~KAGaLN~~l~~s~~~t~g~~Il~lDAD~~~~~p~~L~~~l~~f~D~~~~~~vg~VQ~Pq~f~n~ 330 (745)
+.++..++ +.++++|+|.|++. ++||+|+++|+|..++ |++|..++..+.+.. .+.|.......+.
T Consensus 123 v~vi~~~~-----n~G~~~A~N~G~~~----A~gd~i~flD~D~~~~-p~~L~~ll~~~~~~~----~~vv~~~~~~~~~ 188 (501)
T 2ffu_A 123 VRVLRNDR-----REGLMRSRVRGADA----AQAKVLTFLDSHCECN-EHWLEPLLERVAEDR----TRVVSPIIDVINM 188 (501)
T ss_dssp EEEEECSS-----CCHHHHHHHHHHHH----CCSSEEEECCSSEEEC-TTCHHHHHHHHHHCT----TEEEEEEEEEECT
T ss_pred EEEEECCC-----CCCHHHHHHHHHHH----CCCCEEEEECCCCCCC-CCHHHHHHHHHHHCC----CEEEEEEECCCCC
T ss_conf 79998998-----86889999998986----6898899977983067-207999999998399----7699940533858
Q ss_pred CCCC------HHHHH--HHHHHH------HHH-HH----HHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 9667------07877--987434------268-56----42149953334420021331067754466535766643077
Q 004562 331 NEHD------IYDGS--LRSGYR------LQW-PG----MDGLKGPFLTGTGHYIRRESLYGNFKHKGIDLAELKDTFGE 391 (745)
Q Consensus 331 ~~~d------~~~~~--~~~f~~------~~~-~g----~d~~~~~~~~Gtg~~~RR~AL~~~~~~~~~d~~~~~~~~~~ 391 (745)
+.-. ..... ....+. ... .. ......+...|.+.++||+++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~------------------- 249 (501)
T 2ffu_A 189 DNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFE------------------- 249 (501)
T ss_dssp TTCCEECBCSSEEEEECTTCCEEEEECCHHHHHHTSSCTTSCEECSSCCSSSEEEEHHHHH-------------------
T ss_pred CCCEEECCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEEHHHHH-------------------
T ss_conf 8734605776633276206777445389889851037977764475312148999899999-------------------
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC---CCHHHHHHHHHHCCCEEEEECC
Q ss_conf 2467865432101344677650145787422111420001245441012369996---5319999999987976999199
Q 004562 392 SNLFIKSLHQSYEHKNVNGENLSNVLQQETEVLASCSYEHQTKWGEEVGFSYQSV---SEDFFTGFILHCKGWTSTYLDP 468 (745)
Q Consensus 392 ~~~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~c~ye~~~~wg~~~G~~~~si---tED~~ts~rl~~~Gwrs~y~~~ 468 (745)
+.+||++... .||+++++|+...|++..|++.
T Consensus 250 ---------------------------------------------~iGgfde~~~~~g~ED~dl~~Rl~~~G~~i~~~p~ 284 (501)
T 2ffu_A 250 ---------------------------------------------ELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPC 284 (501)
T ss_dssp ---------------------------------------------HTTCCCTTCCSSSSHHHHHHHHHHHTTCEEEEEEE
T ss_pred ---------------------------------------------HHCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCC
T ss_conf ---------------------------------------------74888854546675328999999864974998037
No 7
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=1.00 E-value=1 Score=149.78 Aligned_cols=218 Identities=14% Similarity=0.060 Sum_probs=145.4
Q ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 91699981699999965899999999871999999608999829999000676899887410013466530554579533
Q 004562 95 PAIDVFICTADPEKEPTFGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLRGMREAFRFAKWWIPFCRRYRIKTICPQA 174 (745)
Q Consensus 95 P~VdV~V~t~~~ynEp~~~v~~Tv~s~~~ldYP~~kl~v~V~DDg~s~~T~~~l~Ea~~fa~~wvpfcr~~~v~~r~p~~ 174 (745)
|.|+|+||| ||++ ..+.+|+.|+++++||. ++|+|+|||++|.|.+.+.+.+
T Consensus 1 p~vSViIp~---yn~~-~~l~~~l~Sl~~q~~~~--~eiivvDd~S~d~t~~~~~~~~---------------------- 52 (255)
T 1qg8_A 1 PKVSVIMTS---YNKS-DYVAKSISSILSQTFSD--FELFIMDDNSNEETLNVIRPFL---------------------- 52 (255)
T ss_dssp CCEEEEEEE---SSCT-TTHHHHHHHHHTCSCCC--EEEEEEECSCCHHHHHHHGGGG----------------------
T ss_pred CEEEEEEEC---CCCH-HHHHHHHHHHHHCCCCC--EEEEEEECCCCCHHHHHHHHHH----------------------
T ss_conf 959999971---7977-89999999998562786--4999997899710899999986----------------------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHCCCCCCCEEEEE
Q ss_conf 43334456678980427999999999999999998865228878778895413221037997202220012576608999
Q 004562 175 YFSEAESDENFGDSEFVTEKRKIKEKYEMFEEQVMKAVEDGEYGNSRNHSTIIEIIQDTSGENETIRQADLVEMPLLVYV 254 (745)
Q Consensus 175 yf~~~~~~~~~~~~~~~~e~~~ik~~y~~l~~ri~~~~~~~~~~~~~~h~~~~~v~~~~~~~~~~~~~~~~~~~P~l~Yi 254 (745)
..|++.|+
T Consensus 53 ------------------------------------------------------------------------~~~~i~~i 60 (255)
T 1qg8_A 53 ------------------------------------------------------------------------NDNRVRFY 60 (255)
T ss_dssp ------------------------------------------------------------------------GSTTEEEE
T ss_pred ------------------------------------------------------------------------HCCCEEEE
T ss_conf ------------------------------------------------------------------------06988999
Q ss_pred ECCCCCCC----CCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHC-CCCCCCCEEEECCCCCCC-
Q ss_conf 54679998----889969999999986398789888999589989896079999997622-999999478982771102-
Q 004562 255 SREKSPEH----LHHFKGGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHL-DPKTSSSLAFVQFPQKFH- 328 (745)
Q Consensus 255 ~R~k~p~~----~~~~KAGaLN~~l~~s~~~t~g~~Il~lDAD~~~~~p~~L~~~l~~f~-D~~~~~~vg~VQ~Pq~f~- 328 (745)
..+.. +. .+.++++|+|.|++. ++||||+++|+|.++. |+++.+++..|. +|+ +++|.+.....
T Consensus 61 ~~~~~-~~~~~~~n~G~~~a~N~gi~~----a~g~~i~~lD~Dd~~~-~~~l~~~~~~~~~~~~----~~~v~~~~~~~~ 130 (255)
T 1qg8_A 61 QSDIS-GVKERTEKTRYAALINQAIEM----AEGEYITYATDDNIYM-PDRLLKMVRELDTHPE----KAVIYSASKTYH 130 (255)
T ss_dssp ECCCC-SHHHHHSSCHHHHHHHHHHHH----CCCSEEEEEETTEEEC-TTHHHHHHHHHHHCTT----CCEEEEEEEEEE
T ss_pred ECCCC-CCCCCCCCCCHHHHHHHHHHH----CCCCEEEEECCCCCCC-HHHHHHHHHHHHHCCC----CEEEEECEEEEE
T ss_conf 64653-332221466789999999987----5888899968987628-2799999999985899----059984328998
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCC
Q ss_conf -5896670787798743426856421499533344200213310677544665357666430772467865432101344
Q 004562 329 -NFNEHDIYDGSLRSGYRLQWPGMDGLKGPFLTGTGHYIRRESLYGNFKHKGIDLAELKDTFGESNLFIKSLHQSYEHKN 407 (745)
Q Consensus 329 -n~~~~d~~~~~~~~f~~~~~~g~d~~~~~~~~Gtg~~~RR~AL~~~~~~~~~d~~~~~~~~~~~~~~v~s~~~~~~~~~ 407 (745)
+.+.. ..... .... ...........+|++.++||+++..
T Consensus 131 ~~~~~~-~~~~~----~~~~-~~~~~~~~~~~~~~~~~~rr~~~~~---------------------------------- 170 (255)
T 1qg8_A 131 LNENRD-IVKET----VRPA-AQVTWNAPCAIDHCSVMHRYSVLEK---------------------------------- 170 (255)
T ss_dssp EC---C-EEEEE----EECC-CSCBSCCTTTSCGGGEEEETHHHHH----------------------------------
T ss_pred ECCCCC-CHHHC----CCCH-HHHHHHHCCCCCCCEEEEEHHHHHH----------------------------------
T ss_conf 578876-51220----5864-7788751587765327788999975----------------------------------
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC-CC------C-CCCCCCHHHHHHHHHHCCCEEEEECCCCCEEEECCCC
Q ss_conf 67765014578742211142000124544101-23------6-9996531999999998797699919998806731487
Q 004562 408 VNGENLSNVLQQETEVLASCSYEHQTKWGEEV-GF------S-YQSVSEDFFTGFILHCKGWTSTYLDPSRPQFLGTSTT 479 (745)
Q Consensus 408 ~~~~~~~~~~~~~~~~v~~c~ye~~~~wg~~~-G~------~-~~sitED~~ts~rl~~~Gwrs~y~~~~~~~~~g~aP~ 479 (745)
.+ || . .....||.+..+++..+| +..|+++ ....+-..+.
T Consensus 171 ------------------------------~g~~f~~~~~~~~~~~~~eD~~~~~r~~~~g-~~~~~~~-~~~~~r~~~~ 218 (255)
T 1qg8_A 171 ------------------------------VKEKFGSYWDESPAFYRIGDARFFWRVNHFY-PFYPLDE-ELDLNYITDQ 218 (255)
T ss_dssp ------------------------------HHHHHSSSSCCCGGGSTTHHHHHHHHHTTTC-CBEEEEE-EEEEEEEC--
T ss_pred ------------------------------HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CEEEECC-CEEEEEECCC
T ss_conf ------------------------------3310222235785412477999999999759-8898068-5899997698
Q ss_pred CHHHHH--HHHHHHHCC
Q ss_conf 967887--676774326
Q 004562 480 NLNDVL--IQGTRWASG 494 (745)
Q Consensus 480 ~l~~~l--~Qr~RWa~G 494 (745)
+..... .|+.+|.+.
T Consensus 219 s~s~~~~~~~~~~~~~~ 235 (255)
T 1qg8_A 219 SIHFQLFELEKNEFVRN 235 (255)
T ss_dssp ------------CTGGG
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 64165789989999984
No 8
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=1.00 E-value=1 Score=147.74 Aligned_cols=199 Identities=10% Similarity=0.033 Sum_probs=129.4
Q ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 91699981699999965899999999871999999608999829999000676899887410013466530554579533
Q 004562 95 PAIDVFICTADPEKEPTFGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLRGMREAFRFAKWWIPFCRRYRIKTICPQA 174 (745)
Q Consensus 95 P~VdV~V~t~~~ynEp~~~v~~Tv~s~~~ldYP~~kl~v~V~DDg~s~~T~~~l~Ea~~fa~~wvpfcr~~~v~~r~p~~ 174 (745)
|.|+|+||| ||++ ..+.+|+.|+++++||. ++|+|+|||++|.|.+.+.+.++
T Consensus 2 p~vSVIIp~---yN~~-~~L~~~L~Sll~Qt~~~--~EIIVVDDgStD~t~~il~~~~~--------------------- 54 (729)
T 3l7i_A 2 NKLTIIVTY---YNAE-EYITGCLESIKQQRTQD--FNLIIVNDGSTDQSKKLMDEAIK--------------------- 54 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEEEC---CCCH-HHHHHHHHHHHHCCCCC--EEEEEEECCCCCCHHHHHHHHHH---------------------
T ss_conf 669999976---7878-99999999998277898--69999978998757999999997---------------------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHCCCCCCCEEEEE
Q ss_conf 43334456678980427999999999999999998865228878778895413221037997202220012576608999
Q 004562 175 YFSEAESDENFGDSEFVTEKRKIKEKYEMFEEQVMKAVEDGEYGNSRNHSTIIEIIQDTSGENETIRQADLVEMPLLVYV 254 (745)
Q Consensus 175 yf~~~~~~~~~~~~~~~~e~~~ik~~y~~l~~ri~~~~~~~~~~~~~~h~~~~~v~~~~~~~~~~~~~~~~~~~P~l~Yi 254 (745)
.+ -+++.++
T Consensus 55 -------------------------~~----------------------------------------------~~~i~~i 63 (729)
T 3l7i_A 55 -------------------------DY----------------------------------------------DKNIRFI 63 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------HC----------------------------------------------CCCEEEE
T ss_conf -------------------------47----------------------------------------------9988999
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 54679998889969999999986398789888999589989896079999997622999999478982771102589667
Q 004562 255 SREKSPEHLHHFKGGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKTSSSLAFVQFPQKFHNFNEHD 334 (745)
Q Consensus 255 ~R~k~p~~~~~~KAGaLN~~l~~s~~~t~g~~Il~lDAD~~~~~p~~L~~~l~~f~D~~~~~~vg~VQ~Pq~f~n~~~~d 334 (745)
..++ +.|+++|.|.|++. ++||||+++|+|.++. |++|..++..+.+++ +..... ...+.+..
T Consensus 64 ~~~~-----n~G~~~arN~gi~~----A~gdyI~flD~Dd~~~-p~~l~~l~~~l~~~d----~v~~~~--~~~~~~~~- 126 (729)
T 3l7i_A 64 DLDE-----NSGHAHARNIALEE----VETPYFMFLDADDELA-SYAITFYLEKFNNTD----GLIAPI--HSFTTQRP- 126 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ECCC-----CCCHHHHHHHHHHH----CCCCEEEEECCCCCCC-HHHHHHHHHHHCCCC----EEEEEE--EEEECCCC-
T ss_conf 8888-----77879999999986----6699899988987778-469999999823799----899866--88624787-
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 07877987434268564214995--3334420021331067754466535766643077246786543210134467765
Q 004562 335 IYDGSLRSGYRLQWPGMDGLKGP--FLTGTGHYIRRESLYGNFKHKGIDLAELKDTFGESNLFIKSLHQSYEHKNVNGEN 412 (745)
Q Consensus 335 ~~~~~~~~f~~~~~~g~d~~~~~--~~~Gtg~~~RR~AL~~~~~~~~~d~~~~~~~~~~~~~~v~s~~~~~~~~~~~~~~ 412 (745)
.+.......... ..+....... ...+.+.++||+++.
T Consensus 127 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~rr~~l~---------------------------------------- 165 (729)
T 3l7i_A 127 QFVDLDRVRVEY-FNAKENINSFLRKQSACNIIFRTAIVR---------------------------------------- 165 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCEEEEE-ECCHHHHHHHHHCCCHHHEEEEHHHHH----------------------------------------
T ss_conf 402356503465-243144888753256312466399999----------------------------------------
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCC-CCCCHHHHHHHHHHCCCEEEEECCCCCEE
Q ss_conf 014578742211142000124544101-23699-96531999999998797699919998806
Q 004562 413 LSNVLQQETEVLASCSYEHQTKWGEEV-GFSYQ-SVSEDFFTGFILHCKGWTSTYLDPSRPQF 473 (745)
Q Consensus 413 ~~~~~~~~~~~v~~c~ye~~~~wg~~~-G~~~~-sitED~~ts~rl~~~Gwrs~y~~~~~~~~ 473 (745)
+.+ ||+.+ ...||.+..+++..+|++..|++++....
T Consensus 166 ------------------------~~gl~fde~~~~~ED~d~~~rl~~~g~~i~~~~~~~~~~ 204 (729)
T 3l7i_A 166 ------------------------AHHIRFNENLNTYVDWSFVLEYMKYVNKFVRIFNFPFYF 204 (729)
T ss_dssp ---------------------------------------------------------------
T ss_pred ------------------------HCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCEEEE
T ss_conf ------------------------739986998780047999999998569789965947999
No 9
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=1.00 E-value=1 Score=146.16 Aligned_cols=198 Identities=14% Similarity=0.034 Sum_probs=129.7
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99916999816999999658999999998719999996089998299990006768998874100134665305545795
Q 004562 93 KLPAIDVFICTADPEKEPTFGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLRGMREAFRFAKWWIPFCRRYRIKTICP 172 (745)
Q Consensus 93 ~~P~VdV~V~t~~~ynEp~~~v~~Tv~s~~~ldYP~~kl~v~V~DDg~s~~T~~~l~Ea~~fa~~wvpfcr~~~v~~r~p 172 (745)
..|.|+|+||+ ||++ ..+.+++.|+++++||. ++|+|+|||++|.|.+.+.+.++
T Consensus 3 ~~p~vsViIp~---yn~~-~~l~~~l~Sl~~q~~~~--~eiIvvDd~S~d~t~~~~~~~~~------------------- 57 (240)
T 3bcv_A 3 LIPKVSVIVPI---YNVE-KYLDQCVQALLAQTLSD--IEIILIDDESPDNCPKICDDYAA------------------- 57 (240)
T ss_dssp CCCSEEEEEEE---SSCT-TTHHHHHHHHHTCSSSS--EEEEEEECCCSSSHHHHHHHHHH-------------------
T ss_pred CCCCEEEEEEC---CCCH-HHHHHHHHHHHHCCCCC--EEEEEEECCCCCCHHHHHHHHHH-------------------
T ss_conf 99848999966---8977-89999999999576898--69999989998678999999996-------------------
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHCCCCCCCEEE
Q ss_conf 33433344566789804279999999999999999988652288787788954132210379972022200125766089
Q 004562 173 QAYFSEAESDENFGDSEFVTEKRKIKEKYEMFEEQVMKAVEDGEYGNSRNHSTIIEIIQDTSGENETIRQADLVEMPLLV 252 (745)
Q Consensus 173 ~~yf~~~~~~~~~~~~~~~~e~~~ik~~y~~l~~ri~~~~~~~~~~~~~~h~~~~~v~~~~~~~~~~~~~~~~~~~P~l~ 252 (745)
..|++.
T Consensus 58 --------------------------------------------------------------------------~~~~i~ 63 (240)
T 3bcv_A 58 --------------------------------------------------------------------------QYPNIK 63 (240)
T ss_dssp --------------------------------------------------------------------------HCSSEE
T ss_pred --------------------------------------------------------------------------HCCCEE
T ss_conf --------------------------------------------------------------------------589789
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 99546799988899699999999863987898889995899898960799999976229999994789827711025896
Q 004562 253 YVSREKSPEHLHHFKGGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKTSSSLAFVQFPQKFHNFNE 332 (745)
Q Consensus 253 Yi~R~k~p~~~~~~KAGaLN~~l~~s~~~t~g~~Il~lDAD~~~~~p~~L~~~l~~f~D~~~~~~vg~VQ~Pq~f~n~~~ 332 (745)
++.. + +.++++|.|.|++. ++||||+++|+|.++. |++|.+++..+.+++ .+.|.+.....+.+.
T Consensus 64 ~i~~-~-----n~G~~~a~N~g~~~----a~g~~i~~lD~Dd~~~-~~~l~~l~~~~~~~~----~~~v~~~~~~~~~~~ 128 (240)
T 3bcv_A 64 VIHK-K-----NAGLGMACNSGLDV----ATGEYVAFCDSDDYVD-SDMYMTMYNVAQKYT----CDAVFTGLKRITMAG 128 (240)
T ss_dssp EEEC-C-----CCCHHHHHHHHHHH----CCSSEEEECCTTCCCC-TTHHHHHHHHHHHHT----CSEEEC---------
T ss_pred EEEC-C-----CCCHHHHHHHHHHH----CCCCEEEEECCCCCCC-HHHHHHHHHHHHHCC----CCEEEEEEEEECCCC
T ss_conf 9988-9-----99949999999997----6899999987987588-899999999998469----998997668873688
Q ss_pred C--CHHHHHH--HHHHH---HHHHHHHHCCC---------CCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHH
Q ss_conf 6--7078779--87434---26856421499---------5333442002133106775446653576664307724678
Q 004562 333 H--DIYDGSL--RSGYR---LQWPGMDGLKG---------PFLTGTGHYIRRESLYGNFKHKGIDLAELKDTFGESNLFI 396 (745)
Q Consensus 333 ~--d~~~~~~--~~f~~---~~~~g~d~~~~---------~~~~Gtg~~~RR~AL~~~~~~~~~d~~~~~~~~~~~~~~v 396 (745)
. ....... ...+. ......+..+. ...+|.+.++||+++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~------------------------ 184 (240)
T 3bcv_A 129 IPTGTVTHQKEFKLYKNKNEIHTLLKDLIASDPYAREERAIQVSAKVVLYRRNLIE------------------------ 184 (240)
T ss_dssp -----------CEEECSHHHHHHHHGGGTSSCHHHHHHHHHHHTCSCEEEEHHHHH------------------------
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCHHHEEEEHHHHH------------------------
T ss_conf 64433223444200247778888999985033333025530233421255599999------------------------
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCC--CCCCHHHHHHHHHHCCCEEEEECC
Q ss_conf 6543210134467765014578742211142000124544101-23699--965319999999987976999199
Q 004562 397 KSLHQSYEHKNVNGENLSNVLQQETEVLASCSYEHQTKWGEEV-GFSYQ--SVSEDFFTGFILHCKGWTSTYLDP 468 (745)
Q Consensus 397 ~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~c~ye~~~~wg~~~-G~~~~--sitED~~ts~rl~~~Gwrs~y~~~ 468 (745)
+.+ ||+.+ ...||.+..+|+..+|++..|+++
T Consensus 185 ----------------------------------------~~g~~f~~~~~~~~eD~~~~~r~~~~g~~i~~~~~ 219 (240)
T 3bcv_A 185 ----------------------------------------KKHLRFVSERILPSEDLIFNVDVLANSNIVCVLPQ 219 (240)
T ss_dssp ----------------------------------------HTTCCCCCTTTCTTHHHHHHHHHHTTCSCEEECC-
T ss_pred ----------------------------------------HCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECC
T ss_conf ----------------------------------------73982578887617778999999985998999878
No 10
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=1.00 E-value=1 Score=136.82 Aligned_cols=227 Identities=14% Similarity=-0.047 Sum_probs=135.8
Q ss_pred CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99991699981699999965899999999871999999608999829999000676899887410013466530554579
Q 004562 92 DKLPAIDVFICTADPEKEPTFGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLRGMREAFRFAKWWIPFCRRYRIKTIC 171 (745)
Q Consensus 92 ~~~P~VdV~V~t~~~ynEp~~~v~~Tv~s~~~ldYP~~kl~v~V~DDg~s~~T~~~l~Ea~~fa~~wvpfcr~~~v~~r~ 171 (745)
...|.|+|+||+ |||+ +.+.+++.|+.+++||. ..+|+|+|||++|.|.+.+.+. +.
T Consensus 45 ~~~~~vSViIp~---yN~~-~~l~~~l~sl~~q~~~~-~~eiivVDdgS~D~t~~~~~~~--------------~~---- 101 (329)
T 3ckj_A 45 KAGRTISVVLPA---LDEE-DTIGSVIDSISPLVDGL-VDELIVLDSGSTDDTEIRAVAA--------------GA---- 101 (329)
T ss_dssp TTTCCEEEEEEE---SSCT-TTHHHHHHHHGGGBTTT-BSEEEEEECSCCSSHHHHHHHT--------------TC----
T ss_pred CCCCCEEEEEEE---CCCH-HHHHHHHHHHHHHHCCC-CCEEEEEECCCCCHHHHHHHHH--------------HH----
T ss_conf 569968999960---7877-89999999999850799-8389999699984599999985--------------32----
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHCCCCCCCEE
Q ss_conf 53343334456678980427999999999999999998865228878778895413221037997202220012576608
Q 004562 172 PQAYFSEAESDENFGDSEFVTEKRKIKEKYEMFEEQVMKAVEDGEYGNSRNHSTIIEIIQDTSGENETIRQADLVEMPLL 251 (745)
Q Consensus 172 p~~yf~~~~~~~~~~~~~~~~e~~~ik~~y~~l~~ri~~~~~~~~~~~~~~h~~~~~v~~~~~~~~~~~~~~~~~~~P~l 251 (745)
++ .+++
T Consensus 102 --------------------------------------------------------~~------------------~~~~ 107 (329)
T 3ckj_A 102 --------------------------------------------------------RV------------------VSRE 107 (329)
T ss_dssp --------------------------------------------------------EE------------------EEHH
T ss_pred --------------------------------------------------------HH------------------CCCE
T ss_conf --------------------------------------------------------31------------------2430
Q ss_pred EEEE-CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCC-CCCCHHHHHHHHHH-CCCCCCCCEEEECCCCCCC
Q ss_conf 9995-4679998889969999999986398789888999589989-89607999999762-2999999478982771102
Q 004562 252 VYVS-REKSPEHLHHFKGGALNVLLRVSGVISNSPYILGLDCDMY-CNDPTSARQAMCFH-LDPKTSSSLAFVQFPQKFH 328 (745)
Q Consensus 252 ~Yi~-R~k~p~~~~~~KAGaLN~~l~~s~~~t~g~~Il~lDAD~~-~~~p~~L~~~l~~f-~D~~~~~~vg~VQ~Pq~f~ 328 (745)
.++. .++ +.+|++|+|.+++. ++||||+++|+|.. +. |+++.+.+..+ .+++ +++|++.....
T Consensus 108 ~~~~~~~~-----n~G~~~a~n~g~~~----a~gd~i~~lD~D~~~~~-p~~l~~l~~~l~~~~~----~~~v~g~~~~~ 173 (329)
T 3ckj_A 108 QALPEVPI-----RPGKGEALWRSLAA----SRGDIVVFVDSDLINPH-PMFVPWLVGPLLTGDG----VHLVKSFYRRP 173 (329)
T ss_dssp HHCTTSCC-----CCSHHHHHHHHHHH----CCCSEEEECCTTEESCC-TTHHHHHHHHHHSCSS----CCEEEEEEECC
T ss_pred EEECCCCC-----CCCHHHHHHHHHHH----CCCCEEEEECCCCCCCC-HHHHHHHHHHHHHCCC----CCEEEEEECCC
T ss_conf 23114778-----88899999999996----78999999899888769-6899999999985999----42999873053
Q ss_pred CC-CC-----CCHHHHH-HHHHHHH-HHHHHHHCC-CCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 58-96-----6707877-9874342-685642149-95333442002133106775446653576664307724678654
Q 004562 329 NF-NE-----HDIYDGS-LRSGYRL-QWPGMDGLK-GPFLTGTGHYIRRESLYGNFKHKGIDLAELKDTFGESNLFIKSL 399 (745)
Q Consensus 329 n~-~~-----~d~~~~~-~~~f~~~-~~~g~d~~~-~~~~~Gtg~~~RR~AL~~~~~~~~~d~~~~~~~~~~~~~~v~s~ 399 (745)
.. +. .....+. ...+... ........+ ...+.|...++||+++.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rr~~l~--------------------------- 226 (329)
T 3ckj_A 174 LNVGDAGGGAGATGGGRVTELVARPLLAALRPELGCILQPLGGEYAATRELLT--------------------------- 226 (329)
T ss_dssp ---------------CHHHHHTHHHHHHHHCGGGGGCSCTTCSCEEEEHHHHT---------------------------
T ss_pred CCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHH---------------------------
T ss_conf 14776433344568870102537799998645232655777344556699997---------------------------
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-CCCE-EEEECC-------CC
Q ss_conf 32101344677650145787422111420001245441012369996531999999998-7976-999199-------98
Q 004562 400 HQSYEHKNVNGENLSNVLQQETEVLASCSYEHQTKWGEEVGFSYQSVSEDFFTGFILHC-KGWT-STYLDP-------SR 470 (745)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~v~~c~ye~~~~wg~~~G~~~~sitED~~ts~rl~~-~Gwr-s~y~~~-------~~ 470 (745)
++||+.+ ..||.++.+++.. .|++ ..+++- ..
T Consensus 227 --------------------------------------~i~f~~~-~~~D~~l~~r~~~~~g~~~i~~v~~~~r~h~~s~ 267 (329)
T 3ckj_A 227 --------------------------------------SVPFAPG-YGVEIGLLVDTFDRLGLDAIAQVNLGVREHRNRP 267 (329)
T ss_dssp --------------------------------------TSCBCCG-GGHHHHHHHHHHHHHCGGGEEEEEEEECEECCCC
T ss_pred --------------------------------------HCCCCCC-CCCCHHHHHHHHHHCCCCCEEEECCEEEECCCCC
T ss_conf --------------------------------------5799887-7630999999998629761766032577648985
Q ss_pred CEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 8067314879678876767743265
Q 004562 471 PQFLGTSTTNLNDVLIQGTRWASGL 495 (745)
Q Consensus 471 ~~~~g~aP~~l~~~l~Qr~RWa~G~ 495 (745)
....+.....+.....||.+|..+.
T Consensus 268 ~~~~~~m~~~i~~~~l~r~~~~~~~ 292 (329)
T 3ckj_A 268 LAELGAMSRQVIATLLSRCGIPDSG 292 (329)
T ss_dssp GGGHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 7789999999999999845888875
Done!