Query 004564
Match_columns 745
No_of_seqs 367 out of 2153
Neff 6.0
Searched_HMMs 29240
Date Tue Mar 26 17:43:13 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004564.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1868-1871//hhsearch_pdb/004564hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fpq_A Serine/threonine-protei 1.0 1 1 469.5 30.4 276 7-284 11-289 (290)
2 4fie_A Serine/threonine-protei 1.0 1 1 441.8 26.0 257 17-285 147-408 (423)
3 4fih_A Serine/threonine-protei 1.0 1 1 438.9 25.3 257 17-285 70-331 (346)
4 4b9d_A Serine/threonine-protei 1.0 1 1 435.7 23.8 256 19-284 22-283 (350)
5 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 432.2 22.4 254 22-285 33-298 (311)
6 3hyh_A Carbon catabolite-derep 1.0 1 1 422.8 23.4 256 18-284 10-269 (275)
7 3ubd_A Ribosomal protein S6 ki 1.0 1 1 421.9 17.6 258 16-285 20-289 (304)
8 4g3f_A NF-kappa-beta-inducing 1.0 1 1 418.2 24.6 250 20-283 56-328 (336)
9 3v5w_A G-protein coupled recep 1.0 1 1 416.5 29.1 259 21-287 189-459 (689)
10 4b99_A Mitogen-activated prote 1.0 1 1 412.7 24.6 258 19-284 52-351 (398)
No 1
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=1.00 E-value=1 Score=469.46 Aligned_cols=276 Identities=48% Similarity=0.876 Sum_probs=250.5
Q ss_pred CCCCCCCCEEECCCCCEEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99898775275999852467677451386599999985799299999976055579977999999999999937999832
Q 004564 7 LEPDCSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHKNIM 86 (745)
Q Consensus 7 ~ep~~~~~~e~dp~GRY~rl~e~LG~Gafg~Vy~A~d~~tg~~VAiK~Ik~~~~~~s~~~~e~l~~Ei~iLk~L~HpNIV 86 (745)
.+......+...++|||+++.+.||+|+||+||+|.+..++..||+|.+.... ......+++.+|+.+|+.|+|||||
T Consensus 11 ~~~~~~~~~~~~~~gr~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~--~~~~~~~~~~~E~~il~~l~HpnIV 88 (290)
T 3fpq_A 11 IEELETKAVGMSNDGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRK--LTKSERQRFKEEAEMLKGLQHPNIV 88 (290)
T ss_dssp ------CEEEECTTSSEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGG--SCHHHHHHHHHHHHHHHTCCCTTBC
T ss_pred HHHHHHHHCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECHHH--CCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 77776654176789836895069700738599999988999099999983254--7989999999999999867998999
Q ss_pred EEEEEEEEC--CCCEEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEECCCC
Q ss_conf 476897855--898599998236899999999974888999999999999999877540999979404877633551999
Q 004564 87 KFYTSWVDT--ANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKLWCRQILRGLLYLHSHDPPVIHRDLKCDNIFVNGNQ 164 (745)
Q Consensus 87 kl~~~fvd~--~~~~iyLVtEy~~gGSL~~~l~k~~~L~e~~i~~ia~QIL~gL~yLHs~g~~IIHRDLKp~NILId~~~ 164 (745)
++|++|.+. ....+|+||||+.+|+|.+++.+.+.+++..++.|++||+.||.|||+++++|+||||||+|||+++.+
T Consensus 89 ~~~~~~~~~~~~~~~~~lvmEy~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDlKp~NILl~~~~ 168 (290)
T 3fpq_A 89 RFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPT 168 (290)
T ss_dssp CEEEEEEEEETTEEEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCCCGGGEEESSTT
T ss_pred CEEEEEEECCCCCCEEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHEEEECCC
T ss_conf 19889964367886899999487978999999866999999999999999999999997799887164574266588899
Q ss_pred CCEEECCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 92897476215656216777656888768802221003753322123668999864378999999979999999829999
Q 004564 165 GEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEEAYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVVSGKKP 244 (745)
Q Consensus 165 g~VKL~DFGlA~~l~~~~~~~~vGTp~YmAPEil~~~ys~ksDIWSLGiiL~ELlTG~~Pf~~~~~~~~i~~ki~~g~~p 244 (745)
|.+||+|||+|+..........+|||.|||||++.+.|+.++|||||||++|||+||++||.+..+..+++..+..+..|
T Consensus 169 g~vKl~DFGla~~~~~~~~~~~~GTp~YmAPE~~~~~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~~~~~i~~~~~~ 248 (290)
T 3fpq_A 169 GSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKP 248 (290)
T ss_dssp SCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCC
T ss_pred CCEEEEECCCCEECCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 98899727688767987667762480201897807999927888879999999997889999998199999999738998
Q ss_pred CCCCCCCCHHHHHHHHHHHH-CCCCCCCHHHHHCCCCCCCC
Q ss_conf 98666899799999999862-80699899988349877863
Q 004564 245 DSLYRVKDPEVRRFVEKCLA-TVSLRLSARELLNDPFLQID 284 (745)
Q Consensus 245 ~~l~~~~s~el~~lI~kCL~-dPskRpSa~ELL~hPflq~~ 284 (745)
..++...++++++||.+||+ +|.+|||+.|+|+||||+..
T Consensus 249 ~~~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~Hp~~~~~ 289 (290)
T 3fpq_A 249 ASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFFQEE 289 (290)
T ss_dssp GGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGC--
T ss_pred CCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCCCCCCC
T ss_conf 77776578999999999763896579199999569040589
No 2
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=441.78 Aligned_cols=257 Identities=30% Similarity=0.506 Sum_probs=224.6
Q ss_pred ECCCCCEEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
Q ss_conf 59998524676774513865999999857992999999760555799779999999999999379998324768978558
Q 004564 17 VDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHKNIMKFYTSWVDTA 96 (745)
Q Consensus 17 ~dp~GRY~rl~e~LG~Gafg~Vy~A~d~~tg~~VAiK~Ik~~~~~~s~~~~e~l~~Ei~iLk~L~HpNIVkl~~~fvd~~ 96 (745)
.||..+| ++.+.||+|+||+||+|.++.+|+.||+|++.+.. ....+.+.+|+.+|+.++|||||++|++|.+
T Consensus 147 ~dp~~~y-~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~----~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~-- 219 (423)
T 4fie_A 147 GDPRSYL-DNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRK----QQRRELLFNEVVIMRDYQHENVVEMYNSYLV-- 219 (423)
T ss_dssp SCGGGTE-EEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTT----CSSGGGHHHHHHHHHHCCCTTBCCEEEEEEE--
T ss_pred CCHHHHC-EEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCC----HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE--
T ss_conf 9826843-86169624818489999999999899999986255----4689999999999985799898716899998--
Q ss_pred CCEEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEECCCCCCEEECCCCHHH
Q ss_conf 98599998236899999999974888999999999999999877540999979404877633551999928974762156
Q 004564 97 NRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKLWCRQILRGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAA 176 (745)
Q Consensus 97 ~~~iyLVtEy~~gGSL~~~l~k~~~L~e~~i~~ia~QIL~gL~yLHs~g~~IIHRDLKp~NILId~~~g~VKL~DFGlA~ 176 (745)
...+|+||||+.||+|.+++. .+++++..++.|++||+.||.|||+++ ||||||||+||||+ .+|.+||+|||+|+
T Consensus 220 ~~~~~iVmEy~~gG~L~~~i~-~~~l~e~~~~~~~~qil~aL~ylH~~~--IiHRDiKp~NILl~-~~g~vKl~DFGla~ 295 (423)
T 4fie_A 220 GDELWVVMEFLEGGALTDIVT-HTRMNEEQIAAVCLAVLQALSVLHAQG--VIHRDIKSDSILLT-HDGRVKLSDFGFCA 295 (423)
T ss_dssp TTEEEEEEECCTTEEHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSTTTEEEC-TTCCEEECCCTTCE
T ss_pred CCEEEEEEECCCCCCHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHCC--EECCCCCHHHEEEC-CCCCEEEECCCCCE
T ss_conf 999999996989982898876-169899999999999999999999889--04465787778985-89998980372654
Q ss_pred HHHCC--CCCCCCCCCCCCCHHHHH-HCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCC-CCCCCCC
Q ss_conf 56216--777656888768802221-0037533221236689998643789999999799999998299999-8666899
Q 004564 177 ILRKS--HAAHCVGTPEFMAPEVYE-EAYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVVSGKKPD-SLYRVKD 252 (745)
Q Consensus 177 ~l~~~--~~~~~vGTp~YmAPEil~-~~ys~ksDIWSLGiiL~ELlTG~~Pf~~~~~~~~i~~ki~~g~~p~-~l~~~~s 252 (745)
.+... .....+||+.|||||++. ..|+.++|||||||++|||++|++||.+ .+..+++..+..+..+. ..+...+
T Consensus 296 ~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~-~~~~~~~~~i~~~~~~~~~~~~~~s 374 (423)
T 4fie_A 296 QVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFN-EPPLKAMKMIRDNLPPRLKNLHKVS 374 (423)
T ss_dssp ECCSSCCCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTT-SCHHHHHHHHHHSCCCCCSCTTSSC
T ss_pred ECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 777887643466647472799997799999689999999999999978799898-6999999999727998876501299
Q ss_pred HHHHHHHHHHHH-CCCCCCCHHHHHCCCCCCCCC
Q ss_conf 799999999862-806998999883498778632
Q 004564 253 PEVRRFVEKCLA-TVSLRLSARELLNDPFLQIDD 285 (745)
Q Consensus 253 ~el~~lI~kCL~-dPskRpSa~ELL~hPflq~~~ 285 (745)
+++++||.+||. ||.+|+|+.|+|+||||+...
T Consensus 375 ~~~~dli~~~L~~dP~~R~ta~ell~Hp~~~~~~ 408 (423)
T 4fie_A 375 PSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAG 408 (423)
T ss_dssp HHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGCC
T ss_pred HHHHHHHHHHCCCCHHHCCCHHHHHCCHHHCCCC
T ss_conf 9999999998678956890999996098756899
No 3
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=438.94 Aligned_cols=257 Identities=30% Similarity=0.496 Sum_probs=224.2
Q ss_pred ECCCCCEEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
Q ss_conf 59998524676774513865999999857992999999760555799779999999999999379998324768978558
Q 004564 17 VDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHKNIMKFYTSWVDTA 96 (745)
Q Consensus 17 ~dp~GRY~rl~e~LG~Gafg~Vy~A~d~~tg~~VAiK~Ik~~~~~~s~~~~e~l~~Ei~iLk~L~HpNIVkl~~~fvd~~ 96 (745)
.||..+| ++.+.||+|+||+||+|.++.+|+.||+|++++... ...+.+.+|+.+|+.++|||||++|++|.+
T Consensus 70 ~dp~~~y-~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~----~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~-- 142 (346)
T 4fih_A 70 GDPRSYL-DNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQ----QRRELLFNEVVIMRDYQHENVVEMYNSYLV-- 142 (346)
T ss_dssp SCGGGTE-EEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGC----SSGGGGHHHHHHHHHCCCTTBCCEEEEEEE--
T ss_pred CCHHHHC-EEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCH----HHHHHHHHHHHHHHHCCCCCCCCEEEEEEE--
T ss_conf 9815753-870796027282999999989998999999852765----689999999999986799899919999998--
Q ss_pred CCEEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEECCCCCCEEECCCCHHH
Q ss_conf 98599998236899999999974888999999999999999877540999979404877633551999928974762156
Q 004564 97 NRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKLWCRQILRGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAA 176 (745)
Q Consensus 97 ~~~iyLVtEy~~gGSL~~~l~k~~~L~e~~i~~ia~QIL~gL~yLHs~g~~IIHRDLKp~NILId~~~g~VKL~DFGlA~ 176 (745)
...+|+||||+.+|+|.+++.+ +++++..++.|++||+.||.|||+++ |+||||||+||||+ .+|.+||+|||+|+
T Consensus 143 ~~~~~ivmEy~~gg~L~~~l~~-~~l~e~~~~~~~~qi~~aL~ylH~~~--IiHRDlKp~NILl~-~~g~vKl~DFGla~ 218 (346)
T 4fih_A 143 GDELWVVMEFLEGGALTDIVTH-TRMNEEQIAAVCLAVLQALSVLHAQG--VIHRDIKSDSILLT-HDGRVKLSDFGFCA 218 (346)
T ss_dssp TTEEEEEECCCTTEEHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEC-TTCCEEECCCTTCE
T ss_pred CCEEEEEEECCCCCCHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCHHHEEEC-CCCCEEEECCCCCE
T ss_conf 9999999969899808999871-89899999999999999999999888--35562788997887-99988990275753
Q ss_pred HHHCC--CCCCCCCCCCCCCHHHHH-HCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCC-CCCCCCC
Q ss_conf 56216--777656888768802221-0037533221236689998643789999999799999998299999-8666899
Q 004564 177 ILRKS--HAAHCVGTPEFMAPEVYE-EAYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVVSGKKPD-SLYRVKD 252 (745)
Q Consensus 177 ~l~~~--~~~~~vGTp~YmAPEil~-~~ys~ksDIWSLGiiL~ELlTG~~Pf~~~~~~~~i~~ki~~g~~p~-~l~~~~s 252 (745)
.+... .....+||+.|||||++. ..|+.++|||||||++|||+||++||.+ .+..+++..+..+..+. ..+...+
T Consensus 219 ~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~-~~~~~~~~~i~~~~~~~~~~~~~~s 297 (346)
T 4fih_A 219 QVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFN-EPPLKAMKMIRDNLPPRLKNLHKVS 297 (346)
T ss_dssp ECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTT-SCHHHHHHHHHHSSCCCCSCGGGSC
T ss_pred ECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 667887753465627582799997799999689999999999999978799898-5999999999717999887502299
Q ss_pred HHHHHHHHHHHH-CCCCCCCHHHHHCCCCCCCCC
Q ss_conf 799999999862-806998999883498778632
Q 004564 253 PEVRRFVEKCLA-TVSLRLSARELLNDPFLQIDD 285 (745)
Q Consensus 253 ~el~~lI~kCL~-dPskRpSa~ELL~hPflq~~~ 285 (745)
+++++||.+||. ||.+|||+.|+|+||||+...
T Consensus 298 ~~~~dli~~~L~~dP~~R~ta~e~l~Hp~~~~~~ 331 (346)
T 4fih_A 298 PSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAG 331 (346)
T ss_dssp HHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGCC
T ss_pred HHHHHHHHHHCCCCHHHCCCHHHHHCCHHHCCCC
T ss_conf 9999999998679956890999996098656899
No 4
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=435.73 Aligned_cols=256 Identities=24% Similarity=0.441 Sum_probs=227.0
Q ss_pred CCCCEEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCC
Q ss_conf 99852467677451386599999985799299999976055579977999999999999937999832476897855898
Q 004564 19 PTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHKNIMKFYTSWVDTANR 98 (745)
Q Consensus 19 p~GRY~rl~e~LG~Gafg~Vy~A~d~~tg~~VAiK~Ik~~~~~~s~~~~e~l~~Ei~iLk~L~HpNIVkl~~~fvd~~~~ 98 (745)
.-.|| ++.+.||+|+||+||+|+++.+|+.||+|++++.. ......+++.+|+.+|+.|+|||||+++++|.+ ..
T Consensus 22 sme~Y-~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~--~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~--~~ 96 (350)
T 4b9d_A 22 SMEKY-VRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISR--MSSKEREESRREVAVLANMKHPNIVQYRESFEE--NG 96 (350)
T ss_dssp CCCCE-EEEEEC------CEEEEEETTTCCEEEEEEEECTT--SCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE--TT
T ss_pred CCCCE-EEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHH--CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE--CC
T ss_conf 51255-88479702779399999988999899999986587--897999999999999987799898919999998--99
Q ss_pred EEEEEEECCCCCCHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEECCCCCCEEECCCCHHH
Q ss_conf 5999982368999999999748--88999999999999999877540999979404877633551999928974762156
Q 004564 99 NINFVTEMFTSGTLRQYRLKHK--RVNIRAVKLWCRQILRGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAA 176 (745)
Q Consensus 99 ~iyLVtEy~~gGSL~~~l~k~~--~L~e~~i~~ia~QIL~gL~yLHs~g~~IIHRDLKp~NILId~~~g~VKL~DFGlA~ 176 (745)
.+|+||||+.||+|.+++...+ .+++..++.|+.||+.||.|||+++ |+||||||+||||+ .+|.+||+|||+|+
T Consensus 97 ~~yiVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~--IiHRDlKp~NILl~-~~g~vKl~DFGla~ 173 (350)
T 4b9d_A 97 SLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRK--ILHRDIKSQNIFLT-KDGTVQLGDFGIAR 173 (350)
T ss_dssp EEEEEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT--CEETTCCGGGEEEC-TTCCEEECSTTEES
T ss_pred EEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--EEECCCCHHHEEEC-CCCCEEECCCCCCE
T ss_conf 9999994889983999999738999978999999999999999999899--15135978997987-89998976465214
Q ss_pred HHHCC--CCCCCCCCCCCCCHHHHHH-CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 56216--7776568887688022210-03753322123668999864378999999979999999829999986668997
Q 004564 177 ILRKS--HAAHCVGTPEFMAPEVYEE-AYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVVSGKKPDSLYRVKDP 253 (745)
Q Consensus 177 ~l~~~--~~~~~vGTp~YmAPEil~~-~ys~ksDIWSLGiiL~ELlTG~~Pf~~~~~~~~i~~ki~~g~~p~~l~~~~s~ 253 (745)
.+... .....+||+.|||||++.+ .|+.++|||||||++|||+||+.||.+ .+..+++.++..+..|. .+..+++
T Consensus 174 ~~~~~~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~-~~~~~~~~~i~~~~~~~-~~~~~s~ 251 (350)
T 4b9d_A 174 VLNSTVELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEA-GSMKNLVLKIISGSFPP-VSLHYSY 251 (350)
T ss_dssp CCCHHHHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCC-SSHHHHHHHHHHTCCCC-CCTTSCH
T ss_pred EECCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHHCCCCCC-CCCCCCH
T ss_conf 406885410145788360399998799989599999999999999978799899-69999999998089999-9755799
Q ss_pred HHHHHHHHHHH-CCCCCCCHHHHHCCCCCCCC
Q ss_conf 99999999862-80699899988349877863
Q 004564 254 EVRRFVEKCLA-TVSLRLSARELLNDPFLQID 284 (745)
Q Consensus 254 el~~lI~kCL~-dPskRpSa~ELL~hPflq~~ 284 (745)
++++||.+||+ ||.+|||+.|+|+||||+..
T Consensus 252 ~~~~li~~~L~~dP~~R~s~~e~l~hp~~~~~ 283 (350)
T 4b9d_A 252 DLRSLVSQLFKRNPRDRPSVNSILEKGFIAKR 283 (350)
T ss_dssp HHHHHHHHHTCSSGGGSCCHHHHHTSHHHHTT
T ss_pred HHHHHHHHHCCCCHHHCCCHHHHHCCHHHHCC
T ss_conf 99999999855896679089999639976167
No 5
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=432.21 Aligned_cols=254 Identities=26% Similarity=0.424 Sum_probs=225.7
Q ss_pred CEEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEE
Q ss_conf 52467677451386599999985799299999976055579977999999999999937999832476897855898599
Q 004564 22 RYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHKNIMKFYTSWVDTANRNIN 101 (745)
Q Consensus 22 RY~rl~e~LG~Gafg~Vy~A~d~~tg~~VAiK~Ik~~~~~~s~~~~e~l~~Ei~iLk~L~HpNIVkl~~~fvd~~~~~iy 101 (745)
.| ++.++||+|+||+||+|++..+++.||+|++.+.... .....+.+.+|+.+|+.++|||||++|++|.+ ...+|
T Consensus 33 dy-~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~-~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~--~~~~y 108 (311)
T 4aw0_A 33 DF-KFGKILGEGSFSTVVLARELATSREYAIKILEKRHII-KENKVPYVTRERDVMSRLDHPFFVKLYFTFQD--DEKLY 108 (311)
T ss_dssp GE-EEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHH-HTTCHHHHHHHHHHHTTCCCTTBCCEEEEEEC--SSEEE
T ss_pred CC-EEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCC-CHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE--CCEEE
T ss_conf 36-8988983164849999999999989999998888877-97899999999999986799898919999973--89899
Q ss_pred EEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEECCCCCCEEECCCCHHHHHHCC
Q ss_conf 99823689999999997488899999999999999987754099997940487763355199992897476215656216
Q 004564 102 FVTEMFTSGTLRQYRLKHKRVNIRAVKLWCRQILRGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKS 181 (745)
Q Consensus 102 LVtEy~~gGSL~~~l~k~~~L~e~~i~~ia~QIL~gL~yLHs~g~~IIHRDLKp~NILId~~~g~VKL~DFGlA~~l~~~ 181 (745)
+||||+.||+|.+++.+.+.+++..++.|++||+.||.|||+++ |+||||||+|||++ .+|.+||+|||+|+.+...
T Consensus 109 ivmEy~~gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~ylH~~~--IiHRDlKPeNILl~-~~g~vKl~DFGla~~~~~~ 185 (311)
T 4aw0_A 109 FGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG--IIHRDLKPENILLN-EDMHIQITDFGTAKVLSPE 185 (311)
T ss_dssp EEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEC-TTSCEEECCCTTCEECCTT
T ss_pred EEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCHHHEEEC-CCCCEEEEECCCCEECCCC
T ss_conf 99964899899999987499999999999999999999999887--82687878996985-8988899876875025778
Q ss_pred ----CCCCCCCCCCCCCHHHHHH-CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf ----7776568887688022210-03753322123668999864378999999979999999829999986668997999
Q 004564 182 ----HAAHCVGTPEFMAPEVYEE-AYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVVSGKKPDSLYRVKDPEVR 256 (745)
Q Consensus 182 ----~~~~~vGTp~YmAPEil~~-~ys~ksDIWSLGiiL~ELlTG~~Pf~~~~~~~~i~~ki~~g~~p~~l~~~~s~el~ 256 (745)
...+.+||+.|||||++.+ .|+.++||||+||++|+|+||++||.+ .+..+++.++..+... ++...+++++
T Consensus 186 ~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~-~~~~~~~~~i~~~~~~--~p~~~s~~~~ 262 (311)
T 4aw0_A 186 SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRA-GNEGLIFAKIIKLEYD--FPEKFFPKAR 262 (311)
T ss_dssp TTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCC-SSHHHHHHHHHHTCCC--CCTTCCHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHHCCCCC--CCCCCCHHHH
T ss_conf 776543675568030799897689999689899899999999749899899-7999999999719999--9965699999
Q ss_pred HHHHHHHH-CCCCCCCHHH------HHCCCCCCCCC
Q ss_conf 99999862-8069989998------83498778632
Q 004564 257 RFVEKCLA-TVSLRLSARE------LLNDPFLQIDD 285 (745)
Q Consensus 257 ~lI~kCL~-dPskRpSa~E------LL~hPflq~~~ 285 (745)
+||.+||. ||.+|+|+.| +++||||+..+
T Consensus 263 dli~~lL~~dp~~R~t~~e~~~~~~i~~Hp~F~~id 298 (311)
T 4aw0_A 263 DLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVT 298 (311)
T ss_dssp HHHHHHSCSSGGGSTTSGGGTCHHHHHTSGGGTTCC
T ss_pred HHHHHHCCCCHHHCCCHHHHCCCHHHHCCCCCCCCC
T ss_conf 999997628975780967975877987798758989
No 6
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=1.00 E-value=1 Score=422.80 Aligned_cols=256 Identities=25% Similarity=0.472 Sum_probs=226.3
Q ss_pred CCCCCEEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf 99985246767745138659999998579929999997605557997799999999999993799983247689785589
Q 004564 18 DPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHKNIMKFYTSWVDTAN 97 (745)
Q Consensus 18 dp~GRY~rl~e~LG~Gafg~Vy~A~d~~tg~~VAiK~Ik~~~~~~s~~~~e~l~~Ei~iLk~L~HpNIVkl~~~fvd~~~ 97 (745)
..-|+| ++.+.||+|+||+||+|.+..+++.||+|++++... .......++.+|+.+|+.++||||++++++|.+ .
T Consensus 10 ~~ig~Y-~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~-~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~--~ 85 (275)
T 3hyh_A 10 AHIGNY-QIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVL-AKSDMQGRIEREISYLRLLRHPHIIKLYDVIKS--K 85 (275)
T ss_dssp ----CC-EEEEEEEC---CCEEEEECTTTCCEEEEEEEECC-------CHHHHHHHHHHHHHCCCTTBCCEEEEEEC--S
T ss_pred CEEECE-EEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHC-CCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE--C
T ss_conf 893386-899998217681999999999998999999837886-787899999999999987799899929999998--9
Q ss_pred CEEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEECCCCCCEEECCCCHHHH
Q ss_conf 85999982368999999999748889999999999999998775409999794048776335519999289747621565
Q 004564 98 RNINFVTEMFTSGTLRQYRLKHKRVNIRAVKLWCRQILRGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAI 177 (745)
Q Consensus 98 ~~iyLVtEy~~gGSL~~~l~k~~~L~e~~i~~ia~QIL~gL~yLHs~g~~IIHRDLKp~NILId~~~g~VKL~DFGlA~~ 177 (745)
..+|+||||+ +|+|.+++.+.+++++..++.|++||+.||.|||+++ |+||||||+|||++ .++.+||+|||+|+.
T Consensus 86 ~~~~ivmEy~-~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~--IiHRDiKP~NILl~-~~~~vkl~DFGla~~ 161 (275)
T 3hyh_A 86 DEIIMVIEYA-GNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRHK--IVHRDLKPENLLLD-EHLNVKIADFGLSNI 161 (275)
T ss_dssp SEEEEEEECC-CEEHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCTTTEEEC-TTCCEEECCSSCC--
T ss_pred CEEEEEEECC-CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCHHHEEEC-CCCCEEEEECCCCEE
T ss_conf 9899999278-9978999987499999999999999999999999889--30666875876887-999899945477726
Q ss_pred HHCC-CCCCCCCCCCCCCHHHHHH-CC-CCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 6216-7776568887688022210-03-7533221236689998643789999999799999998299999866689979
Q 004564 178 LRKS-HAAHCVGTPEFMAPEVYEE-AY-NELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVVSGKKPDSLYRVKDPE 254 (745)
Q Consensus 178 l~~~-~~~~~vGTp~YmAPEil~~-~y-s~ksDIWSLGiiL~ELlTG~~Pf~~~~~~~~i~~ki~~g~~p~~l~~~~s~e 254 (745)
.... .....+||+.|||||++.+ .| +.++||||+||++|+|+||+.||.+ .+..++++.+..+..+ ++...+++
T Consensus 162 ~~~~~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~-~~~~~~~~~i~~~~~~--~p~~~s~~ 238 (275)
T 3hyh_A 162 MTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDD-ESIPVLFKNISNGVYT--LPKFLSPG 238 (275)
T ss_dssp -------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCC-SSHHHHHHHHHHTCCC--CCTTSCHH
T ss_pred CCCCCCCCCEEECCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHHCCCCC--CCCCCCHH
T ss_conf 67887467702893527745506898889836568789999999988799899-8999999999749999--98779999
Q ss_pred HHHHHHHHHH-CCCCCCCHHHHHCCCCCCCC
Q ss_conf 9999999862-80699899988349877863
Q 004564 255 VRRFVEKCLA-TVSLRLSARELLNDPFLQID 284 (745)
Q Consensus 255 l~~lI~kCL~-dPskRpSa~ELL~hPflq~~ 284 (745)
+++||.+||+ ||.+|||+.|+|+||||+.+
T Consensus 239 ~~~li~~~L~~dP~~R~s~~eil~hpw~k~~ 269 (275)
T 3hyh_A 239 AAGLIKRMLIVNPLNRISIHEIMQDDWFKVD 269 (275)
T ss_dssp HHHHHHHHSCSSGGGSCCHHHHHHCHHHHTT
T ss_pred HHHHHHHHCCCCHHHCCCHHHHHCCCCCCCC
T ss_conf 9999999865896689199999719200658
No 7
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=1.00 E-value=1 Score=421.89 Aligned_cols=258 Identities=24% Similarity=0.351 Sum_probs=224.4
Q ss_pred EECCCCCEEEEEEEECCCCCEEEEEEEEC---CCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 75999852467677451386599999985---799299999976055579977999999999999937999832476897
Q 004564 16 EVDPTGRYGRYNEILGKGASKTVYRAFDE---YEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHKNIMKFYTSW 92 (745)
Q Consensus 16 e~dp~GRY~rl~e~LG~Gafg~Vy~A~d~---~tg~~VAiK~Ik~~~~~~s~~~~e~l~~Ei~iLk~L~HpNIVkl~~~f 92 (745)
..+| .+| ++.+.||+|+||+||+|.+. .+++.||+|+++..... .....++.+|+.+|+.++|||||+++++|
T Consensus 20 ~~~p-~~Y-~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~--~~~~~~~~~E~~il~~l~HpnIv~l~~~~ 95 (304)
T 3ubd_A 20 KADP-SQF-ELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLK--VRDRVRTKMERDILVEVNHPFIVKLHYAF 95 (304)
T ss_dssp CCCG-GGE-EEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEE--EEECC------CCCCCCCCTTEECEEEEE
T ss_pred CCCC-CCC-EEEEEEECCCCEEEEEEEECCCCCCCEEEEEEEEEHHHCC--HHHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 3895-565-8988972188839999998558878979999998157768--47899999999999877997999099999
Q ss_pred EECCCCEEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEECCCCCCEEECCC
Q ss_conf 85589859999823689999999997488899999999999999987754099997940487763355199992897476
Q 004564 93 VDTANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKLWCRQILRGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDL 172 (745)
Q Consensus 93 vd~~~~~iyLVtEy~~gGSL~~~l~k~~~L~e~~i~~ia~QIL~gL~yLHs~g~~IIHRDLKp~NILId~~~g~VKL~DF 172 (745)
.+ ...+|+||||+.||+|.+++.+.+.+++..++.|++||+.||.|||+++ |+||||||+|||++ .+|.+||+||
T Consensus 96 ~~--~~~~~ivmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~--IiHRDlKp~NILl~-~~g~vKl~DF 170 (304)
T 3ubd_A 96 QT--EGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLG--IIYRDLKPENILLD-EEGHIKLTDF 170 (304)
T ss_dssp EE--TTEEEEEECCCTTCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSSCCGGGEEEC-TTSCEEEESS
T ss_pred EE--CCEEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCHHHEEEC-CCCCEEECCC
T ss_conf 98--9999999975799888999975599999999999999999999999779--95888878995786-8998876236
Q ss_pred CHHHHHHC--CCCCCCCCCCCCCCHHHHH-HCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 21565621--6777656888768802221-00375332212366899986437899999997999999982999998666
Q 004564 173 GLAAILRK--SHAAHCVGTPEFMAPEVYE-EAYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVVSGKKPDSLYR 249 (745)
Q Consensus 173 GlA~~l~~--~~~~~~vGTp~YmAPEil~-~~ys~ksDIWSLGiiL~ELlTG~~Pf~~~~~~~~i~~ki~~g~~p~~l~~ 249 (745)
|+|+.... ......+||+.|||||++. ..|+.++||||+||++|||+||+.||.+ .+..+++.++..+..+ ++.
T Consensus 171 Gla~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~-~~~~~~~~~i~~~~~~--~p~ 247 (304)
T 3ubd_A 171 GLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQG-KDRKETMTMILKAKLG--MPQ 247 (304)
T ss_dssp EEEEC-----CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCC-SSHHHHHHHHHHCCCC--CCT
T ss_pred CCCEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC-CCHHHHHHHHHCCCCC--CCC
T ss_conf 6343326887630454418150799996568878777636119999999859899898-4999999999718999--987
Q ss_pred CCCHHHHHHHHHHHH-CCCCCCC-----HHHHHCCCCCCCCC
Q ss_conf 899799999999862-8069989-----99883498778632
Q 004564 250 VKDPEVRRFVEKCLA-TVSLRLS-----ARELLNDPFLQIDD 285 (745)
Q Consensus 250 ~~s~el~~lI~kCL~-dPskRpS-----a~ELL~hPflq~~~ 285 (745)
..++++++||.+||+ ||.+||| ++|+++||||+..+
T Consensus 248 ~~s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~Hp~f~~id 289 (304)
T 3ubd_A 248 FLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFFSTID 289 (304)
T ss_dssp TSCHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHTSGGGTTCC
T ss_pred CCCHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHCCCCCCCCC
T ss_conf 689999999999864698787999867899997690403789
No 8
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=418.19 Aligned_cols=250 Identities=24% Similarity=0.325 Sum_probs=214.2
Q ss_pred CCCEEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCE
Q ss_conf 98524676774513865999999857992999999760555799779999999999999379998324768978558985
Q 004564 20 TGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHKNIMKFYTSWVDTANRN 99 (745)
Q Consensus 20 ~GRY~rl~e~LG~Gafg~Vy~A~d~~tg~~VAiK~Ik~~~~~~s~~~~e~l~~Ei~iLk~L~HpNIVkl~~~fvd~~~~~ 99 (745)
.-.++++.++||+|+||+||+|+++.+|+.||+|++++.... .+|+.+|+.++|||||++|++|.+ ...
T Consensus 56 ~~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~~---------~~E~~il~~l~HpnIV~l~~~~~~--~~~ 124 (336)
T 4g3f_A 56 EVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFR---------VEELVACAGLSSPRIVPLYGAVRE--GPW 124 (336)
T ss_dssp TTTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC---------THHHHTTTTCCCTTBCCEEEEEEE--TTE
T ss_pred CHHHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHHH---------HHHHHHHHHCCCCCCCCEEEEEEE--CCE
T ss_conf 533517686851387809999998899989999997888869---------999999985799899939999998--999
Q ss_pred EEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEECCCCCCEEECCCCHHHHHH
Q ss_conf 99998236899999999974888999999999999999877540999979404877633551999928974762156562
Q 004564 100 INFVTEMFTSGTLRQYRLKHKRVNIRAVKLWCRQILRGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILR 179 (745)
Q Consensus 100 iyLVtEy~~gGSL~~~l~k~~~L~e~~i~~ia~QIL~gL~yLHs~g~~IIHRDLKp~NILId~~~g~VKL~DFGlA~~l~ 179 (745)
+|+||||+.||+|.+++.+.+.+++..++.|+.||+.||.|||+++ ||||||||+||||+.+...+||+|||+|+.+.
T Consensus 125 ~~ivmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~--IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~ 202 (336)
T 4g3f_A 125 VNIFMELLEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTRR--ILHGDVKADNVLLSSDGSRAALCDFGHALCLQ 202 (336)
T ss_dssp EEEEECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTT--EECSCCCGGGEEECTTSCCEEECCCTTCEEC-
T ss_pred EEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC--CEECCCCHHHEEEECCCCEEEEEECCCCEECC
T ss_conf 9999966599869999987699999999999999999999999889--04261677887995899979996278776856
Q ss_pred CCC-------CCCCCCCCCCCCHHHHH-HCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCC-CCCCCC
Q ss_conf 167-------77656888768802221-003753322123668999864378999999979999999829999-986668
Q 004564 180 KSH-------AAHCVGTPEFMAPEVYE-EAYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVVSGKKP-DSLYRV 250 (745)
Q Consensus 180 ~~~-------~~~~vGTp~YmAPEil~-~~ys~ksDIWSLGiiL~ELlTG~~Pf~~~~~~~~i~~ki~~g~~p-~~l~~~ 250 (745)
... ....+||+.|||||++. ..|+.++|||||||++|||+||++||.+. +..+++.++..+..+ ..++..
T Consensus 203 ~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~-~~~~~~~~i~~~~~~~~~~~~~ 281 (336)
T 4g3f_A 203 PDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQY-FRGPLCLKIASEPPPIREIPPS 281 (336)
T ss_dssp -----------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTT-CCSCCHHHHHHSCCGGGGSCTT
T ss_pred CCCCCCCEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC-CHHHHHHHHHCCCCCCHHCCCC
T ss_conf 787654022178545580200899988999890899999999999999786998998-9999999998089980025866
Q ss_pred CCHHHHHHHHHHHH-CCCCCCCHHHH-------------HCCCCCCC
Q ss_conf 99799999999862-80699899988-------------34987786
Q 004564 251 KDPEVRRFVEKCLA-TVSLRLSAREL-------------LNDPFLQI 283 (745)
Q Consensus 251 ~s~el~~lI~kCL~-dPskRpSa~EL-------------L~hPflq~ 283 (745)
+++.+++||.+||+ ||.+|||+.|+ |+|||++.
T Consensus 282 ~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~l~hPw~~~ 328 (336)
T 4g3f_A 282 CAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKSPWKGE 328 (336)
T ss_dssp SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTSSCSCSSSS
T ss_pred CCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 79999999999762897689599999999999975443216987677
No 9
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=1.00 E-value=1 Score=416.46 Aligned_cols=259 Identities=25% Similarity=0.374 Sum_probs=223.0
Q ss_pred CCEEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEECCCC--CCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCC
Q ss_conf 85246767745138659999998579929999997605557--9977999999999999937999832476897855898
Q 004564 21 GRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFL--QSPEDLERLYCEIHLLKTLKHKNIMKFYTSWVDTANR 98 (745)
Q Consensus 21 GRY~rl~e~LG~Gafg~Vy~A~d~~tg~~VAiK~Ik~~~~~--~s~~~~e~l~~Ei~iLk~L~HpNIVkl~~~fvd~~~~ 98 (745)
..| .+.++||+|+||+||+|.++.+|+.||+|++++.... ...........++.+++.++|||||+++++|.+ ..
T Consensus 189 ddf-~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~--~~ 265 (689)
T 3v5w_A 189 NDF-SVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHT--PD 265 (689)
T ss_dssp GGE-EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEEC--SS
T ss_pred HHE-EEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE--CC
T ss_conf 892-888898316483999999999998999999757882525568999999999999964899987179999998--99
Q ss_pred EEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEECCCCCCEEECCCCHHHHH
Q ss_conf 59999823689999999997488899999999999999987754099997940487763355199992897476215656
Q 004564 99 NINFVTEMFTSGTLRQYRLKHKRVNIRAVKLWCRQILRGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAIL 178 (745)
Q Consensus 99 ~iyLVtEy~~gGSL~~~l~k~~~L~e~~i~~ia~QIL~gL~yLHs~g~~IIHRDLKp~NILId~~~g~VKL~DFGlA~~l 178 (745)
.+|+||||+.||+|..++.+.+.+++..++.|+.||+.||.|||+++ ||||||||+||||+ .+|.+||+|||+|..+
T Consensus 266 ~lylVmEy~~GGdL~~~l~~~~~l~E~~a~~y~~qIl~aL~yLH~~g--IiHRDLKPeNILld-~~G~vKL~DFGlA~~~ 342 (689)
T 3v5w_A 266 KLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRF--VVYRDLKPANILLD-EHGHVRISDLGLACDF 342 (689)
T ss_dssp EEEEEECCCCSCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTTT--EECCCCSGGGEEEC-TTSCEEECCCTTCEEC
T ss_pred EEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCHHHEEEE-CCCCEEECCCCEEEEC
T ss_conf 88999946899829999986699999999999999999999999788--54168866875980-8998896456556663
Q ss_pred HCCCCCCCCCCCCCCCHHHHH-H-CCCCCCCCHHHHHHHHHHHHCCCCCCCC--CCHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 216777656888768802221-0-0375332212366899986437899999--99799999998299999866689979
Q 004564 179 RKSHAAHCVGTPEFMAPEVYE-E-AYNELVDIYSFGMCILEMVTFEYPYSEC--THPAQIYKKVVSGKKPDSLYRVKDPE 254 (745)
Q Consensus 179 ~~~~~~~~vGTp~YmAPEil~-~-~ys~ksDIWSLGiiL~ELlTG~~Pf~~~--~~~~~i~~ki~~g~~p~~l~~~~s~e 254 (745)
......+.+|||.|||||++. + .|+.++|||||||++|||+||.+||.+. ....+++..+...... ++...+++
T Consensus 343 ~~~~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~~~~--~p~~~S~~ 420 (689)
T 3v5w_A 343 SKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVE--LPDSFSPE 420 (689)
T ss_dssp SSCCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHCCCC--CCTTSCHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCC--CCCCCCHH
T ss_conf 7898777657867318899847999995999999999999998687999999867799999850579888--87669999
Q ss_pred HHHHHHHHHH-CCCCCCC-----HHHHHCCCCCCCCCCC
Q ss_conf 9999999862-8069989-----9988349877863210
Q 004564 255 VRRFVEKCLA-TVSLRLS-----ARELLNDPFLQIDDCE 287 (745)
Q Consensus 255 l~~lI~kCL~-dPskRpS-----a~ELL~hPflq~~~~~ 287 (745)
+++||.+||. ||.+|++ ++++++||||+..+..
T Consensus 421 a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~HpfF~~idW~ 459 (689)
T 3v5w_A 421 LRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQ 459 (689)
T ss_dssp HHHHHHHHTCSCGGGCTTCSSSTHHHHTTSGGGTTCCHH
T ss_pred HHHHHHHHCCCCHHHCCCCCCCCHHHHHCCCCCCCCCHH
T ss_conf 999999976089868799988899999669150478988
No 10
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=412.68 Aligned_cols=258 Identities=28% Similarity=0.397 Sum_probs=216.7
Q ss_pred CCCCEEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC---
Q ss_conf 99852467677451386599999985799299999976055579977999999999999937999832476897855---
Q 004564 19 PTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHKNIMKFYTSWVDT--- 95 (745)
Q Consensus 19 p~GRY~rl~e~LG~Gafg~Vy~A~d~~tg~~VAiK~Ik~~~~~~s~~~~e~l~~Ei~iLk~L~HpNIVkl~~~fvd~--- 95 (745)
...+| ++.+.||+|+||+||+|++..+|+.||+|+++... ......+++.+|+.+|+.|+|||||++++++...
T Consensus 52 i~~~Y-~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~--~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~ 128 (398)
T 4b99_A 52 VGDEY-EIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAF--DVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPY 128 (398)
T ss_dssp CCSSE-EEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTT--SSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCT
T ss_pred CCCCE-EEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCC--CCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC
T ss_conf 78974-89889842608499999998999899999987400--3468899999999999866799954176555203554
Q ss_pred -CCCEEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEECCCCCCEEECCCCH
Q ss_conf -8985999982368999999999748889999999999999998775409999794048776335519999289747621
Q 004564 96 -ANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKLWCRQILRGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGL 174 (745)
Q Consensus 96 -~~~~iyLVtEy~~gGSL~~~l~k~~~L~e~~i~~ia~QIL~gL~yLHs~g~~IIHRDLKp~NILId~~~g~VKL~DFGl 174 (745)
....+|+||||+. |+|.+++.+.+.+++..++.|++||+.||.|||+++ |+||||||+|||++ .+|.+||+|||+
T Consensus 129 ~~~~~~~ivmE~~~-g~L~~~i~~~~~l~~~~~~~~~~qil~al~ylH~~~--iiHRDlKP~NIl~~-~~~~~Ki~DFGl 204 (398)
T 4b99_A 129 GEFKSVYVVLDLME-SDLHQIIHSSQPLTLEHVRYFLYQLLRGLKYMHSAQ--VIHRDLKPSNLLVN-ENCELKIGDFGM 204 (398)
T ss_dssp TTCCCEEEEEECCS-EEHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCCGGGEEEC-TTCCEEECCCTT
T ss_pred CCCCEEEEEEECCC-CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCCCCCC-CCCCEEEEECCE
T ss_conf 66887999983799-988999986599999999999999999999999886--76787371335427-888778722143
Q ss_pred HHHHHC------CCCCCCCCCCCCCCHHHHHH--CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHC--CCCC
Q ss_conf 565621------67776568887688022210--0375332212366899986437899999997999999982--9999
Q 004564 175 AAILRK------SHAAHCVGTPEFMAPEVYEE--AYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVVS--GKKP 244 (745)
Q Consensus 175 A~~l~~------~~~~~~vGTp~YmAPEil~~--~ys~ksDIWSLGiiL~ELlTG~~Pf~~~~~~~~i~~ki~~--g~~p 244 (745)
|+.+.. ......+||+.|||||++.+ .|+.++||||+||++|||+||++||.+. +.......+.. +..+
T Consensus 205 a~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~-~~~~~l~~I~~~~g~p~ 283 (398)
T 4b99_A 205 ARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGK-NYVHQLQLIMMVLGTPS 283 (398)
T ss_dssp CBCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCS-SHHHHHHHHHHHHCCCC
T ss_pred EEECCCCCCCCCCCCCCCEECHHHCCHHHHCCCCCCCCHHHEEHHHHHHHHHHHCCCCCCCC-CHHHHHHHHHHHCCCCC
T ss_conf 42134675456666566255867648787627888997222111689999999788998988-98999999997038998
Q ss_pred CC---------------------------CCCCCCHHHHHHHHHHHH-CCCCCCCHHHHHCCCCCCCC
Q ss_conf 98---------------------------666899799999999862-80699899988349877863
Q 004564 245 DS---------------------------LYRVKDPEVRRFVEKCLA-TVSLRLSARELLNDPFLQID 284 (745)
Q Consensus 245 ~~---------------------------l~~~~s~el~~lI~kCL~-dPskRpSa~ELL~hPflq~~ 284 (745)
.. +....++++++||.+||. ||.+|+||.|+|+||||+..
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~ 351 (398)
T 4b99_A 284 PAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRHPFLAKY 351 (398)
T ss_dssp GGGTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTSGGGTTT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCHHHCCC
T ss_conf 67763310023455553078768878898587999999999999774995579189999659723868
Done!