Query 004565
Match_columns 745
No_of_seqs 469 out of 3106
Neff 9.3
Searched_HMMs 29240
Date Tue Mar 26 17:58:32 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004565.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1868-1871//hhsearch_pdb/004565hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gt4_A Tyrosine-protein kinase 1.0 1 1 405.0 11.5 265 373-679 17-305 (308)
2 4aoj_A High affinity nerve gro 1.0 1 1 398.9 16.3 252 386-679 45-318 (329)
3 4asz_A BDNF/NT-3 growth factor 1.0 1 1 397.6 11.5 250 386-677 17-286 (299)
4 3omv_A RAF proto-oncogene seri 1.0 1 1 393.9 12.7 253 385-677 39-297 (307)
5 4ase_A Vascular endothelial gr 1.0 1 1 381.5 9.6 260 378-678 60-345 (353)
6 4b9d_A Serine/threonine-protei 1.0 1 1 374.4 12.8 245 386-673 28-276 (350)
7 4fie_A Serine/threonine-protei 1.0 1 1 370.2 20.2 245 386-673 155-400 (423)
8 4fih_A Serine/threonine-protei 1.0 1 1 367.5 20.5 244 387-673 79-323 (346)
9 3hmm_A TGF-beta receptor type- 1.0 1 1 367.4 17.2 267 386-677 7-294 (303)
10 4g3f_A NF-kappa-beta-inducing 1.0 1 1 363.2 17.6 245 387-677 63-313 (336)
No 1
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=405.04 Aligned_cols=265 Identities=27% Similarity=0.391 Sum_probs=216.2
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEC------CCCEEEEEEECCC-CCCHHHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 54888999962047987543575169999979------9969999995158-9500889999999980179871132899
Q 004565 373 RFSYEELAAATDNFNTPIGSGGFGTVYKGILQ------DKSVVAVKKINSF-GIQGKKEFCTEITIIGNIHHVNLVRLKG 445 (745)
Q Consensus 373 ~~~~~el~~~t~~f~~~ig~G~fg~Vy~g~~~------~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~g 445 (745)
...+.|+...+..|.++||+|+||.||+|.+. .+..||||+++.. .....++|.+|+.++++++|||||+++|
T Consensus 17 ~~~~~ei~~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g 96 (308)
T 4gt4_A 17 QAKLKEISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLG 96 (308)
T ss_dssp --CCCBCCGGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred CCCCCCCCHHHCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCE
T ss_conf 37722287888858669135888489999985776588886999999880149689999999999998589989877364
Q ss_pred EEEECCEEEEEEEECCCCCHHHHHCCCC---------------CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCC
Q ss_conf 9982983399995058999233300798---------------5448889999999999998886507999606267899
Q 004565 446 FCAQGRQRFLVYEYMNKGSLDRTLFGNG---------------SVLEWRERFEIALGTARGLAYLHTGCDHKIIHCDVKP 510 (745)
Q Consensus 446 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~---------------~~l~~~~~~~i~~~ia~~l~yLH~~~~~~i~H~dik~ 510 (745)
+|.+....++||||+++|+|.++|.... ..++|..++.|+.|||.||.|||+ ++|+||||||
T Consensus 97 ~~~~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLK~ 173 (308)
T 4gt4_A 97 VVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSS---HHVVHKDLAT 173 (308)
T ss_dssp EECSSSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSG
T ss_pred EEEECCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCC
T ss_conf 9988998899998189994999998627654333322111124689999999999999999999986---8997787362
Q ss_pred CCEEECCCCCEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHH-CCCCCCCCCC
Q ss_conf 983455999739904788634799976-31002345667558322367988876555414799999873-9989972000
Q 004565 511 ENILLHDKLQVKISDFGLSKLLTPEQS-SLFTTMRGTRGYLAPEWLTSSAISDKTDVYSYGMVLLEIIS-GRKNSSLKIQ 588 (745)
Q Consensus 511 ~NIlld~~~~~kl~Dfgl~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~t~~~Dv~s~Gvll~el~t-g~~p~~~~~~ 588 (745)
+||||++++.+||+|||+++....... ...+...||+.|+|||++.++.++.++|||||||+||||+| |+.||....
T Consensus 174 ~NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~- 252 (308)
T 4gt4_A 174 RNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS- 252 (308)
T ss_dssp GGEEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCC-
T ss_pred CCEEECCCCCEEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_conf 3068879997898876020233677740473451257765698998279999630001579999999968999999989-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 24555688999999999999966654328999999975034330123312389999999999999987027899999998
Q 004565 589 SRSTEKDSSGDGNGPSSSSSPRESQRVYFPLLALELHEQRRYLELADSRIEGQVSDEDVEKLVRIALCCVQEEPMLRPSM 668 (745)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~l~~~cl~~~p~~RPt~ 668 (745)
..... .....+.. ...+......+.+++..||+.||++||||
T Consensus 253 ----------------------------~~~~~-~~i~~~~~---------~~~p~~~~~~~~~li~~C~~~dP~~RPs~ 294 (308)
T 4gt4_A 253 ----------------------------NQDVV-EMIRNRQV---------LPCPDDCPAWVYALMIECWNEFPSRRPRF 294 (308)
T ss_dssp ----------------------------HHHHH-HHHHTTCC---------CCCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred ----------------------------HHHHH-HHHHCCCC---------CCCCCCCHHHHHHHHHHHCCCCHHHCCCH
T ss_conf ----------------------------99999-99981998---------99962036999999999758796579299
Q ss_pred HHHHHHHCCCC
Q ss_conf 89999850699
Q 004565 669 ANVVSMLEGGM 679 (745)
Q Consensus 669 ~evl~~L~~~~ 679 (745)
.+|++.|+...
T Consensus 295 ~ei~~~L~a~~ 305 (308)
T 4gt4_A 295 KDIHSRLRAWG 305 (308)
T ss_dssp HHHHHHHHTSC
T ss_pred HHHHHHHHHCC
T ss_conf 99999998531
No 2
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=398.86 Aligned_cols=252 Identities=27% Similarity=0.427 Sum_probs=211.0
Q ss_pred CCCCCCCCCCEEEEEEEEC------CCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCEEEEEEEE
Q ss_conf 7987543575169999979------9969999995158950088999999998017987113289999829833999950
Q 004565 386 FNTPIGSGGFGTVYKGILQ------DKSVVAVKKINSFGIQGKKEFCTEITIIGNIHHVNLVRLKGFCAQGRQRFLVYEY 459 (745)
Q Consensus 386 f~~~ig~G~fg~Vy~g~~~------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~e~ 459 (745)
+.++||+|+||.||+|.+. ++..||||+++.......++|.+|++++++++|||||+++|+|.+....++||||
T Consensus 45 l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey 124 (329)
T 4aoj_A 45 LKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEY 124 (329)
T ss_dssp EEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred EEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 87797147784899899878665778969999997757979999999999999858998999698999989989999982
Q ss_pred CCCCCHHHHHCCCC--------------CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEECC
Q ss_conf 58999233300798--------------5448889999999999998886507999606267899983455999739904
Q 004565 460 MNKGSLDRTLFGNG--------------SVLEWRERFEIALGTARGLAYLHTGCDHKIIHCDVKPENILLHDKLQVKISD 525 (745)
Q Consensus 460 ~~~gsL~~~l~~~~--------------~~l~~~~~~~i~~~ia~~l~yLH~~~~~~i~H~dik~~NIlld~~~~~kl~D 525 (745)
+++|+|.++++... ..++|..++.|+.|||.||.|||+ ++|+||||||+||||++++.+||+|
T Consensus 125 ~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLKp~NILl~~~~~~Ki~D 201 (329)
T 4aoj_A 125 MRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAG---LHFVHRDLATRNCLVGQGLVVKIGD 201 (329)
T ss_dssp CTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTTEEEECC
T ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC---CCEECCCCCHHHEEECCCCCEEECC
T ss_conf 7999399999860754100122112457889999999999999999999840---8842266667648988999689766
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7886347999763-1002345667558322367988876555414799999873-9989972000245556889999999
Q 004565 526 FGLSKLLTPEQSS-LFTTMRGTRGYLAPEWLTSSAISDKTDVYSYGMVLLEIIS-GRKNSSLKIQSRSTEKDSSGDGNGP 603 (745)
Q Consensus 526 fgl~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~t~~~Dv~s~Gvll~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~ 603 (745)
||+++........ ..+...||+.|||||++.+..++.++|||||||++|||+| |+.||....
T Consensus 202 FGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~---------------- 265 (329)
T 4aoj_A 202 FGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLS---------------- 265 (329)
T ss_dssp CC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSC----------------
T ss_pred CCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC----------------
T ss_conf 6033365678753004764556566582654479999663001057899999828999999989----------------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 9999996665432899999997503433012331238999999999999998702789999999889999850699
Q 004565 604 SSSSSPRESQRVYFPLLALELHEQRRYLELADSRIEGQVSDEDVEKLVRIALCCVQEEPMLRPSMANVVSMLEGGM 679 (745)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~l~~~cl~~~p~~RPt~~evl~~L~~~~ 679 (745)
.... ......+.. ...+......+.+|+..||+.||++||||.||++.|+...
T Consensus 266 -------------~~~~-~~~i~~g~~---------~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~ 318 (329)
T 4aoj_A 266 -------------NTEA-IDCITQGRE---------LERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALA 318 (329)
T ss_dssp -------------HHHH-HHHHHHTCC---------CCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHH
T ss_pred -------------HHHH-HHHHHCCCC---------CCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH
T ss_conf -------------9999-999980898---------9986446399999999974759657929999999999874
No 3
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=397.59 Aligned_cols=250 Identities=27% Similarity=0.452 Sum_probs=210.0
Q ss_pred CCCCCCCCCCEEEEEEEEC------CCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCEEEEEEEE
Q ss_conf 7987543575169999979------9969999995158950088999999998017987113289999829833999950
Q 004565 386 FNTPIGSGGFGTVYKGILQ------DKSVVAVKKINSFGIQGKKEFCTEITIIGNIHHVNLVRLKGFCAQGRQRFLVYEY 459 (745)
Q Consensus 386 f~~~ig~G~fg~Vy~g~~~------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~e~ 459 (745)
+.++||+|+||.||+|.+. ++..||||+++.......++|.+|++++++++|||||+++|+|.+.+..++||||
T Consensus 17 l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey 96 (299)
T 4asz_A 17 LKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEY 96 (299)
T ss_dssp EEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred EEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 82498207882999999877666778879999996777858999999999999858998886287999569989999985
Q ss_pred CCCCCHHHHHCCCC------------CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEECCCC
Q ss_conf 58999233300798------------544888999999999999888650799960626789998345599973990478
Q 004565 460 MNKGSLDRTLFGNG------------SVLEWRERFEIALGTARGLAYLHTGCDHKIIHCDVKPENILLHDKLQVKISDFG 527 (745)
Q Consensus 460 ~~~gsL~~~l~~~~------------~~l~~~~~~~i~~~ia~~l~yLH~~~~~~i~H~dik~~NIlld~~~~~kl~Dfg 527 (745)
+++|+|.++|+..+ ..++|..++.|+.|||.||.|||+ ++|+||||||+|||+++++.+||+|||
T Consensus 97 ~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDlKp~NILl~~~~~~Ki~DFG 173 (299)
T 4asz_A 97 MKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLAS---QHFVHRDLATRNCLVGENLLVKIGDFG 173 (299)
T ss_dssp CTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCS
T ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEECCCC
T ss_conf 89996899998608642111235777889999999999999999999975---990467657763898799868988730
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 863479997631-002345667558322367988876555414799999873-998997200024555688999999999
Q 004565 528 LSKLLTPEQSSL-FTTMRGTRGYLAPEWLTSSAISDKTDVYSYGMVLLEIIS-GRKNSSLKIQSRSTEKDSSGDGNGPSS 605 (745)
Q Consensus 528 l~~~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~t~~~Dv~s~Gvll~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~ 605 (745)
+++......... .....||+.|+|||++.+..++.++|||||||++|||+| |+.||....
T Consensus 174 la~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~------------------ 235 (299)
T 4asz_A 174 MSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLS------------------ 235 (299)
T ss_dssp CHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC------------------
T ss_pred CCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC------------------
T ss_conf 01006788741664751347010388987079997036677889999999808999999989------------------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 999966654328999999975034330123312389999999999999987027899999998899998506
Q 004565 606 SSSPRESQRVYFPLLALELHEQRRYLELADSRIEGQVSDEDVEKLVRIALCCVQEEPMLRPSMANVVSMLEG 677 (745)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~l~~~cl~~~p~~RPt~~evl~~L~~ 677 (745)
...... ....+.. ...+......+.+++..||+.||++||||.+|+++|+.
T Consensus 236 -----------~~~~~~-~i~~~~~---------~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~ 286 (299)
T 4asz_A 236 -----------NNEVIE-CITQGRV---------LQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQN 286 (299)
T ss_dssp -----------HHHHHH-HHHHTCC---------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred -----------HHHHHH-HHHCCCC---------CCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHH
T ss_conf -----------999999-9980898---------89974143999999999768796689299999999987
No 4
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=393.86 Aligned_cols=253 Identities=30% Similarity=0.454 Sum_probs=203.9
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCEEEEEEECCC--CCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCEEEEEEEECCC
Q ss_conf 479875435751699999799969999995158--950088999999998017987113289999829833999950589
Q 004565 385 NFNTPIGSGGFGTVYKGILQDKSVVAVKKINSF--GIQGKKEFCTEITIIGNIHHVNLVRLKGFCAQGRQRFLVYEYMNK 462 (745)
Q Consensus 385 ~f~~~ig~G~fg~Vy~g~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~e~~~~ 462 (745)
.+.++||+|+||.||+|++++ .||||+++.. ..+..+.|.+|++++++++|||||+++|+|.+ +..++||||+++
T Consensus 39 ~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmEy~~g 115 (307)
T 3omv_A 39 MLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQWCEG 115 (307)
T ss_dssp CEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEECCSS
T ss_pred EEEEEEEECCCCEEEEEEECC--CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEEEEEECCCC
T ss_conf 984498208886899999899--68999997268999999999999999985899887469999978-958999974899
Q ss_pred CCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEECCCCCCCCCCCCCC-CCCC
Q ss_conf 992333007985448889999999999998886507999606267899983455999739904788634799976-3100
Q 004565 463 GSLDRTLFGNGSVLEWRERFEIALGTARGLAYLHTGCDHKIIHCDVKPENILLHDKLQVKISDFGLSKLLTPEQS-SLFT 541 (745)
Q Consensus 463 gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~yLH~~~~~~i~H~dik~~NIlld~~~~~kl~Dfgl~~~~~~~~~-~~~~ 541 (745)
|+|.++|+.....++|..++.|+.|||.||.|||+ ++|+||||||+||||++++.+||+|||+|+....... ....
T Consensus 116 GsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~---~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~ 192 (307)
T 3omv_A 116 SSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHA---KNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVE 192 (307)
T ss_dssp CBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCCSSSEEEETTEEEEECCCSSCBC-----------
T ss_pred CCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEEEECCCCEECCCCCCCEEEC
T ss_conf 87889875248999999999999999999999977---995278557899788899908994415754246677640315
Q ss_pred CCCCCCCCCCCCCCCC---CCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 2345667558322367---9888765554147999998739989972000245556889999999999999666543289
Q 004565 542 TMRGTRGYLAPEWLTS---SAISDKTDVYSYGMVLLEIISGRKNSSLKIQSRSTEKDSSGDGNGPSSSSSPRESQRVYFP 618 (745)
Q Consensus 542 ~~~gt~~y~aPE~~~~---~~~t~~~Dv~s~Gvll~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (745)
...||+.|||||++.+ ..++.++|||||||+||||+||+.||.... ...
T Consensus 193 ~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~----------------------------~~~ 244 (307)
T 3omv_A 193 QPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHIN----------------------------NRD 244 (307)
T ss_dssp -CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCC----------------------------CHH
T ss_pred CCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC----------------------------HHH
T ss_conf 6446877249878614689987868775728999999997889989999----------------------------699
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 99999975034330123312389999999999999987027899999998899998506
Q 004565 619 LLALELHEQRRYLELADSRIEGQVSDEDVEKLVRIALCCVQEEPMLRPSMANVVSMLEG 677 (745)
Q Consensus 619 ~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~l~~~cl~~~p~~RPt~~evl~~L~~ 677 (745)
. .......+ ...+.+ ...+......+.+++..||+.||++||||.+|++.|+.
T Consensus 245 ~-~~~~~~~~----~~~p~~-~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~ 297 (307)
T 3omv_A 245 Q-IIFMVGRG----YASPDL-SKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIEL 297 (307)
T ss_dssp H-HHHHHHTT----CCCCCS-TTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHH
T ss_pred H-HHHHHHCC----CCCCCC-CCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHH
T ss_conf 9-99999658----888872-00354456999999999757797689098999999999
No 5
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=381.54 Aligned_cols=260 Identities=25% Similarity=0.364 Sum_probs=207.3
Q ss_pred HHHHHHHCCCCCCCCCCCEEEEEEEECC------CCEEEEEEECCCCC-CHHHHHHHHHHHHCCCC-CCCEEEEEEEEEE
Q ss_conf 9999620479875435751699999799------96999999515895-00889999999980179-8711328999982
Q 004565 378 ELAAATDNFNTPIGSGGFGTVYKGILQD------KSVVAVKKINSFGI-QGKKEFCTEITIIGNIH-HVNLVRLKGFCAQ 449 (745)
Q Consensus 378 el~~~t~~f~~~ig~G~fg~Vy~g~~~~------~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~-h~niv~l~g~~~~ 449 (745)
|+......+.++||+|+||.||+|.+.+ .+.||||++..... ...+.|..|++++.+++ |||||+++|+|.+
T Consensus 60 Ei~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~ 139 (353)
T 4ase_A 60 EFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTK 139 (353)
T ss_dssp BCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECC
T ss_pred EECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEE
T ss_conf 70579959820982178959999998688854477599999976235868999999999999975799848778899994
Q ss_pred C-CEEEEEEEECCCCCHHHHHCCCC---------------CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCE
Q ss_conf 9-83399995058999233300798---------------5448889999999999998886507999606267899983
Q 004565 450 G-RQRFLVYEYMNKGSLDRTLFGNG---------------SVLEWRERFEIALGTARGLAYLHTGCDHKIIHCDVKPENI 513 (745)
Q Consensus 450 ~-~~~~lv~e~~~~gsL~~~l~~~~---------------~~l~~~~~~~i~~~ia~~l~yLH~~~~~~i~H~dik~~NI 513 (745)
. ...++|||||++|+|.++|+... ..+++..++.|+.|||.||.|||+ ++|+||||||+||
T Consensus 140 ~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~---~~iiHRDLK~~NI 216 (353)
T 4ase_A 140 PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRDLAARNI 216 (353)
T ss_dssp TTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGE
T ss_pred CCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHH---CCEECCCCCCCCE
T ss_conf 6977999998389897999997435666543334101103568999999999999999876762---7843574672113
Q ss_pred EECCCCCEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHH-CCCCCCCCCCCCC
Q ss_conf 4559997399047886347999763-1002345667558322367988876555414799999873-9989972000245
Q 004565 514 LLHDKLQVKISDFGLSKLLTPEQSS-LFTTMRGTRGYLAPEWLTSSAISDKTDVYSYGMVLLEIIS-GRKNSSLKIQSRS 591 (745)
Q Consensus 514 lld~~~~~kl~Dfgl~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~t~~~Dv~s~Gvll~el~t-g~~p~~~~~~~~~ 591 (745)
|+++++.+||+|||+|+.+...... ......||+.|||||++.+..++.++|||||||+||||+| |+.||....
T Consensus 217 Ll~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~---- 292 (353)
T 4ase_A 217 LLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK---- 292 (353)
T ss_dssp EECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC----
T ss_pred EECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCC----
T ss_conf 0579997897965432224568872032540146665698999469999755374068999999818999999989----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 55688999999999999966654328999999975034330123312389999999999999987027899999998899
Q 004565 592 TEKDSSGDGNGPSSSSSPRESQRVYFPLLALELHEQRRYLELADSRIEGQVSDEDVEKLVRIALCCVQEEPMLRPSMANV 671 (745)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~l~~~cl~~~p~~RPt~~ev 671 (745)
. . .........+. +...+......+.+++..||+.||++||||.+|
T Consensus 293 ---------------------~---~-~~~~~~i~~g~---------~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~ei 338 (353)
T 4ase_A 293 ---------------------I---D-EEFCRRLKEGT---------RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSEL 338 (353)
T ss_dssp ---------------------C---S-HHHHHHHHHTC---------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred ---------------------H---H-HHHHHHHHCCC---------CCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHH
T ss_conf ---------------------8---9-99999997389---------888886578999999999768696679399999
Q ss_pred HHHHCCC
Q ss_conf 9985069
Q 004565 672 VSMLEGG 678 (745)
Q Consensus 672 l~~L~~~ 678 (745)
++.|+..
T Consensus 339 l~~L~~l 345 (353)
T 4ase_A 339 VEHLGNL 345 (353)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 6
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=374.43 Aligned_cols=245 Identities=22% Similarity=0.361 Sum_probs=202.7
Q ss_pred CCCCCCCCCCEEEEEEEEC-CCCEEEEEEECCC--CCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCEEEEEEEECCC
Q ss_conf 7987543575169999979-9969999995158--950088999999998017987113289999829833999950589
Q 004565 386 FNTPIGSGGFGTVYKGILQ-DKSVVAVKKINSF--GIQGKKEFCTEITIIGNIHHVNLVRLKGFCAQGRQRFLVYEYMNK 462 (745)
Q Consensus 386 f~~~ig~G~fg~Vy~g~~~-~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~e~~~~ 462 (745)
+.++||+|+||.||+|... +++.||||++... .....+.+.+|++++++++|||||++++++.+....++||||+++
T Consensus 28 ~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmEy~~g 107 (350)
T 4b9d_A 28 RLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEG 107 (350)
T ss_dssp EEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred EEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECCCC
T ss_conf 84797027793999999889998999999865878979999999999999877998989199999989999999948899
Q ss_pred CCHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 99233300798-54488899999999999988865079996062678999834559997399047886347999763100
Q 004565 463 GSLDRTLFGNG-SVLEWRERFEIALGTARGLAYLHTGCDHKIIHCDVKPENILLHDKLQVKISDFGLSKLLTPEQSSLFT 541 (745)
Q Consensus 463 gsL~~~l~~~~-~~l~~~~~~~i~~~ia~~l~yLH~~~~~~i~H~dik~~NIlld~~~~~kl~Dfgl~~~~~~~~~~~~~ 541 (745)
|+|.+++...+ ..+++..++.|+.||+.||.|||+ ++|+||||||+||||+.++.+||+|||+|+.+.... ...+
T Consensus 108 g~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~-~~~~ 183 (350)
T 4b9d_A 108 GDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHD---RKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV-ELAR 183 (350)
T ss_dssp CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH---TTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHH-HHHH
T ss_pred CCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCEEECCCCHHHEEECCCCCEEECCCCCCEEECCCC-CCCC
T ss_conf 839999997389999789999999999999999998---991513597899798789998976465214406885-4101
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 23456675583223679888765554147999998739989972000245556889999999999999666543289999
Q 004565 542 TMRGTRGYLAPEWLTSSAISDKTDVYSYGMVLLEIISGRKNSSLKIQSRSTEKDSSGDGNGPSSSSSPRESQRVYFPLLA 621 (745)
Q Consensus 542 ~~~gt~~y~aPE~~~~~~~t~~~Dv~s~Gvll~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (745)
..+||+.|+|||++.+..++.++|||||||++|||++|+.||.... .....
T Consensus 184 ~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~-----------------------------~~~~~ 234 (350)
T 4b9d_A 184 ACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGS-----------------------------MKNLV 234 (350)
T ss_dssp HHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS-----------------------------HHHHH
T ss_pred CCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC-----------------------------HHHHH
T ss_conf 4578836039999879998959999999999999997879989969-----------------------------99999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 9997503433012331238999999999999998702789999999889999
Q 004565 622 LELHEQRRYLELADSRIEGQVSDEDVEKLVRIALCCVQEEPMLRPSMANVVS 673 (745)
Q Consensus 622 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~l~~~cl~~~p~~RPt~~evl~ 673 (745)
..... +.. +.+...+ ...+.+++..||+.||++|||+.|+++
T Consensus 235 ~~i~~-~~~-----~~~~~~~----s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 235 LKIIS-GSF-----PPVSLHY----SYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp HHHHH-TCC-----CCCCTTS----CHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHC-CCC-----CCCCCCC----CHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 99980-899-----9997557----999999999985589667908999963
No 7
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=370.23 Aligned_cols=245 Identities=22% Similarity=0.352 Sum_probs=204.2
Q ss_pred CCCCCCCCCCEEEEEEEEC-CCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCEEEEEEEECCCCC
Q ss_conf 7987543575169999979-996999999515895008899999999801798711328999982983399995058999
Q 004565 386 FNTPIGSGGFGTVYKGILQ-DKSVVAVKKINSFGIQGKKEFCTEITIIGNIHHVNLVRLKGFCAQGRQRFLVYEYMNKGS 464 (745)
Q Consensus 386 f~~~ig~G~fg~Vy~g~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~e~~~~gs 464 (745)
+.++||+|+||.||+|... .+..||||++........+.+.+|+++++.++|||||++++++.+.+..|+||||+++|+
T Consensus 155 ~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~~gG~ 234 (423)
T 4fie_A 155 NFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGA 234 (423)
T ss_dssp EEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEE
T ss_pred EEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECCCCCC
T ss_conf 61696248184899999999998999999862554689999999999985799898716899998999999996989982
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 23330079854488899999999999988865079996062678999834559997399047886347999763100234
Q 004565 465 LDRTLFGNGSVLEWRERFEIALGTARGLAYLHTGCDHKIIHCDVKPENILLHDKLQVKISDFGLSKLLTPEQSSLFTTMR 544 (745)
Q Consensus 465 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~yLH~~~~~~i~H~dik~~NIlld~~~~~kl~Dfgl~~~~~~~~~~~~~~~~ 544 (745)
|.+++... .+++..+..|+.||+.||.|||+ ++|+||||||+||||+.++.+||+|||+|+.+..... .....+
T Consensus 235 L~~~i~~~--~l~e~~~~~~~~qil~aL~ylH~---~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~-~~~~~~ 308 (423)
T 4fie_A 235 LTDIVTHT--RMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP-RRKSLV 308 (423)
T ss_dssp HHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCC-CBCCCE
T ss_pred HHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHH---CCEECCCCCHHHEEECCCCCEEEECCCCCEECCCCCC-CCCCCC
T ss_conf 89887616--98999999999999999999998---8904465787778985899989803726547778876-434666
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 56675583223679888765554147999998739989972000245556889999999999999666543289999999
Q 004565 545 GTRGYLAPEWLTSSAISDKTDVYSYGMVLLEIISGRKNSSLKIQSRSTEKDSSGDGNGPSSSSSPRESQRVYFPLLALEL 624 (745)
Q Consensus 545 gt~~y~aPE~~~~~~~t~~~Dv~s~Gvll~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (745)
||+.|||||++.+..|+.++|||||||++|||++|+.||.... ... ....
T Consensus 309 GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~-----------------------------~~~-~~~~ 358 (423)
T 4fie_A 309 GTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP-----------------------------PLK-AMKM 358 (423)
T ss_dssp ECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC-----------------------------HHH-HHHH
T ss_pred CCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC-----------------------------HHH-HHHH
T ss_conf 4747279999779999968999999999999997879989869-----------------------------999-9999
Q ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 7503433012331238999999999999998702789999999889999
Q 004565 625 HEQRRYLELADSRIEGQVSDEDVEKLVRIALCCVQEEPMLRPSMANVVS 673 (745)
Q Consensus 625 ~~~~~~~~~~d~~l~~~~~~~~~~~l~~l~~~cl~~~p~~RPt~~evl~ 673 (745)
..... .+.+. ........+.+|+..||+.||++|||+.|+++
T Consensus 359 i~~~~-----~~~~~--~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 359 IRDNL-----PPRLK--NLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp HHHSC-----CCCCS--CTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHCCC-----CCCCC--CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 97279-----98876--50129999999999986789568909999960
No 8
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=367.46 Aligned_cols=244 Identities=23% Similarity=0.354 Sum_probs=203.3
Q ss_pred CCCCCCCCCEEEEEEEEC-CCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCEEEEEEEECCCCCH
Q ss_conf 987543575169999979-9969999995158950088999999998017987113289999829833999950589992
Q 004565 387 NTPIGSGGFGTVYKGILQ-DKSVVAVKKINSFGIQGKKEFCTEITIIGNIHHVNLVRLKGFCAQGRQRFLVYEYMNKGSL 465 (745)
Q Consensus 387 ~~~ig~G~fg~Vy~g~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~e~~~~gsL 465 (745)
..+||+|+||.||+|... +++.||||++........+.+.+|+++++.++|||||++++++.+.+..++||||+++|+|
T Consensus 79 ~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L 158 (346)
T 4fih_A 79 FIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGAL 158 (346)
T ss_dssp EEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCCTTEEH
T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECCCCCCH
T ss_conf 07960272829999999899989999998527656899999999999867998999199999989999999969899808
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 33300798544888999999999999888650799960626789998345599973990478863479997631002345
Q 004565 466 DRTLFGNGSVLEWRERFEIALGTARGLAYLHTGCDHKIIHCDVKPENILLHDKLQVKISDFGLSKLLTPEQSSLFTTMRG 545 (745)
Q Consensus 466 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~yLH~~~~~~i~H~dik~~NIlld~~~~~kl~Dfgl~~~~~~~~~~~~~~~~g 545 (745)
.+++... .+++..+..|+.||+.||.|||+ ++|+||||||+||||+.++.+||+|||+|+.+..... ..+..+|
T Consensus 159 ~~~l~~~--~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~-~~~~~~G 232 (346)
T 4fih_A 159 TDIVTHT--RMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP-RRKSLVG 232 (346)
T ss_dssp HHHHHHS--CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC-CBCCCCS
T ss_pred HHHHHCC--CCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEEECCCCCEECCCCCC-CCCCCCC
T ss_conf 9998718--98999999999999999999998---8835562788997887999889902757536678877-5346562
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 66755832236798887655541479999987399899720002455568899999999999996665432899999997
Q 004565 546 TRGYLAPEWLTSSAISDKTDVYSYGMVLLEIISGRKNSSLKIQSRSTEKDSSGDGNGPSSSSSPRESQRVYFPLLALELH 625 (745)
Q Consensus 546 t~~y~aPE~~~~~~~t~~~Dv~s~Gvll~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (745)
|+.|+|||++.+..|+.++|||||||++|||++|+.||.... ... .....
T Consensus 233 Tp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~-----------------------------~~~-~~~~i 282 (346)
T 4fih_A 233 TPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP-----------------------------PLK-AMKMI 282 (346)
T ss_dssp CGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC-----------------------------HHH-HHHHH
T ss_pred CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC-----------------------------HHH-HHHHH
T ss_conf 758279999779999968999999999999997879989859-----------------------------999-99999
Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 503433012331238999999999999998702789999999889999
Q 004565 626 EQRRYLELADSRIEGQVSDEDVEKLVRIALCCVQEEPMLRPSMANVVS 673 (745)
Q Consensus 626 ~~~~~~~~~d~~l~~~~~~~~~~~l~~l~~~cl~~~p~~RPt~~evl~ 673 (745)
..... +.+ .........+.+++..||+.||++|||+.|+++
T Consensus 283 ~~~~~-----~~~--~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 283 RDNLP-----PRL--KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp HHSSC-----CCC--SCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred HCCCC-----CCC--CCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 71799-----988--750229999999999986799568909999960
No 9
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=1.00 E-value=1 Score=367.42 Aligned_cols=267 Identities=25% Similarity=0.326 Sum_probs=199.1
Q ss_pred CCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCHHHHHH--HHHHHHCCCCCCCEEEEEEEEEECC----EEEEEEEE
Q ss_conf 79875435751699999799969999995158950088999--9999980179871132899998298----33999950
Q 004565 386 FNTPIGSGGFGTVYKGILQDKSVVAVKKINSFGIQGKKEFC--TEITIIGNIHHVNLVRLKGFCAQGR----QRFLVYEY 459 (745)
Q Consensus 386 f~~~ig~G~fg~Vy~g~~~~~~~vavK~~~~~~~~~~~~~~--~e~~~l~~l~h~niv~l~g~~~~~~----~~~lv~e~ 459 (745)
+.++||+|+||.||+|++. ++.||||++... ..+.+. .|+..+.+++|||||+++|+|.+.+ ..++||||
T Consensus 7 L~~~iG~G~fG~Vy~~~~~-g~~VAvK~l~~~---~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey 82 (303)
T 3hmm_A 7 LQESIGKGRFGEVWRGKWR-GEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDY 82 (303)
T ss_dssp EEEEEEECSSSEEEEEEET-TEEEEEEEECGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEEC
T ss_pred EEEEEEECCCEEEEEEEEC-CEEEEEEEECCC---CHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEECC
T ss_conf 9789840899399999999-989999998831---336699999999986089998870999998468872378877517
Q ss_pred CCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-----CCCEEECCCCCCCEEECCCCCEEECCCCCCCCCCC
Q ss_conf 5899923330079854488899999999999988865079-----99606267899983455999739904788634799
Q 004565 460 MNKGSLDRTLFGNGSVLEWRERFEIALGTARGLAYLHTGC-----DHKIIHCDVKPENILLHDKLQVKISDFGLSKLLTP 534 (745)
Q Consensus 460 ~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~yLH~~~-----~~~i~H~dik~~NIlld~~~~~kl~Dfgl~~~~~~ 534 (745)
+++|+|.++++.. .++|..+++|+.|++.||+|||+.+ .++|+||||||+||||+.++.+||+|||+++....
T Consensus 83 ~~~gsL~~~l~~~--~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~ 160 (303)
T 3hmm_A 83 HEHGSLFDYLNRY--TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDS 160 (303)
T ss_dssp CTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEET
T ss_pred CCCCCHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCC
T ss_conf 8999689999757--99989999999999999999998524004789876246784208998899789984798745567
Q ss_pred CCCC---CCCCCCCCCCCCCCCCCCCC------CCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9763---10023456675583223679------88876555414799999873998997200024555688999999999
Q 004565 535 EQSS---LFTTMRGTRGYLAPEWLTSS------AISDKTDVYSYGMVLLEIISGRKNSSLKIQSRSTEKDSSGDGNGPSS 605 (745)
Q Consensus 535 ~~~~---~~~~~~gt~~y~aPE~~~~~------~~t~~~Dv~s~Gvll~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~ 605 (745)
.... ......||+.|+|||++.+. .++.++|||||||+||||+||+.|+........ |-.
T Consensus 161 ~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~-----------p~~ 229 (303)
T 3hmm_A 161 ATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQL-----------PYY 229 (303)
T ss_dssp TTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCC-----------TTT
T ss_pred CCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-----------CCH
T ss_conf 777322104642466462698884565455677657067666479999999878998776652235-----------310
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 999966654328999999975034330123312389-999999999999987027899999998899998506
Q 004565 606 SSSPRESQRVYFPLLALELHEQRRYLELADSRIEGQ-VSDEDVEKLVRIALCCVQEEPMLRPSMANVVSMLEG 677 (745)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~-~~~~~~~~l~~l~~~cl~~~p~~RPt~~evl~~L~~ 677 (745)
...+ .............. ...++.+... .+.+....+.+++..||+.||++||||.||++.|+.
T Consensus 230 ~~~~---~~~~~~~~~~~~~~-----~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~ 294 (303)
T 3hmm_A 230 DLVP---SDPSVEEMRKVVCE-----QKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQ 294 (303)
T ss_dssp TTSC---SSCCHHHHHHHHTT-----SCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHH
T ss_pred HCCC---CCCHHHHHHHHHHC-----CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHH
T ss_conf 0254---54309999998750-----25799887655665899999999999760597579599999999998
No 10
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=363.18 Aligned_cols=245 Identities=22% Similarity=0.293 Sum_probs=200.1
Q ss_pred CCCCCCCCCEEEEEEEEC-CCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCEEEEEEEECCCCCH
Q ss_conf 987543575169999979-9969999995158950088999999998017987113289999829833999950589992
Q 004565 387 NTPIGSGGFGTVYKGILQ-DKSVVAVKKINSFGIQGKKEFCTEITIIGNIHHVNLVRLKGFCAQGRQRFLVYEYMNKGSL 465 (745)
Q Consensus 387 ~~~ig~G~fg~Vy~g~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~e~~~~gsL 465 (745)
..+||+|+||.||+|+.. .+..||||+++.... ..+|+++++.++|||||++++++.+....++||||+++|+|
T Consensus 63 ~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L 137 (336)
T 4g3f_A 63 QPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSL 137 (336)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCCTTCBH
T ss_pred CCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH-----HHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECCCCCCH
T ss_conf 8685138780999999889998999999788886-----99999999857998999399999989999999966599869
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCC-CEEECCCCCCCCCCCCCCC----CC
Q ss_conf 333007985448889999999999998886507999606267899983455999-7399047886347999763----10
Q 004565 466 DRTLFGNGSVLEWRERFEIALGTARGLAYLHTGCDHKIIHCDVKPENILLHDKL-QVKISDFGLSKLLTPEQSS----LF 540 (745)
Q Consensus 466 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~yLH~~~~~~i~H~dik~~NIlld~~~-~~kl~Dfgl~~~~~~~~~~----~~ 540 (745)
.+++...+ .+++..+..|+.||+.||.|||+ ++|+||||||+||||+.++ .+||+|||+|+.+...... ..
T Consensus 138 ~~~l~~~~-~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~~~ 213 (336)
T 4g3f_A 138 GQLIKQMG-CLPEDRALYYLGQALEGLEYLHT---RRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTG 213 (336)
T ss_dssp HHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCCGGGEEECTTSCCEEECCCTTCEEC------------
T ss_pred HHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHH---CCCEECCCCHHHEEEECCCCEEEEEECCCCEECCCCCCCCCEECC
T ss_conf 99998769-99999999999999999999998---890426167788799589997999627877685678765402217
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 02345667558322367988876555414799999873998997200024555688999999999999966654328999
Q 004565 541 TTMRGTRGYLAPEWLTSSAISDKTDVYSYGMVLLEIISGRKNSSLKIQSRSTEKDSSGDGNGPSSSSSPRESQRVYFPLL 620 (745)
Q Consensus 541 ~~~~gt~~y~aPE~~~~~~~t~~~Dv~s~Gvll~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (745)
...+||+.|||||++.+..++.++|||||||++|||++|+.||..... ....
T Consensus 214 ~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~-------------------------~~~~--- 265 (336)
T 4g3f_A 214 DYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFR-------------------------GPLC--- 265 (336)
T ss_dssp CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCC-------------------------SCCH---
T ss_pred CCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH-------------------------HHHH---
T ss_conf 854558020089998899989089999999999999978699899899-------------------------9999---
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 999975034330123312389999999999999987027899999998899998506
Q 004565 621 ALELHEQRRYLELADSRIEGQVSDEDVEKLVRIALCCVQEEPMLRPSMANVVSMLEG 677 (745)
Q Consensus 621 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~l~~~cl~~~p~~RPt~~evl~~L~~ 677 (745)
.......... . .+++.....+.+++..||+.||.+|||+.|+++.|..
T Consensus 266 -~~i~~~~~~~----~----~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~ 313 (336)
T 4g3f_A 266 -LKIASEPPPI----R----EIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGK 313 (336)
T ss_dssp -HHHHHSCCGG----G----GSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred -HHHHCCCCCC----H----HCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHH
T ss_conf -9998089980----0----2586679999999999762897689599999999999
Done!