BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>004566
MMFHAQSSSRNHCSLLAVLSRKFVDDKQKQAATDDKPKYPFPEIASSGRLEVHLLSSPST
DEFRRLLESSEPNIVYLQGEKINDSEEIGSLVWGDVDLSTPEALCGLFGSTLPTTVYLEI
PNGENFAEALHSRGVPYVIYWKHSFSCYAACHFLQALLSVVQSSCSHTWDAFQLAHASFR
LYCVRNNIVMASNSQKGSSKLGPHLLGDPPKIDIALSEMDVQGEENSPENLPAIKIYDDD
VTMRFLVCGVPCTLDTSLLGPLEDGLNALLNIEIRGSKLHNRTSAPPPPLQAGAFSRGVV
TMRCDLSTCSSAHISLLVSGSAQTCFNDQLLENHIKNELIENSQLVHALPNSGDNRLPPS
EPRKSASIACGASVFEVSMKVSTWASQVLRQLAPDVSYRSLVMLGIASIQGLSVASFEKD
DAERLLFFCTRQGKADHTENSVLTRPPSWLTSPAPSRKRSEPCRESKGVESENVCNVRPK
LNSAAMRPIPHTRHYKMLPFSGFSEIERYDGDQVKANLPVAPLKHSSAGPTPVTHRKSLS
SSYQAQQIISLNPLPLKKHGCGRAPIQVCSEEEFLRDVMQFLILRGHTRLVPQGGLAEFP
DAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHY
ETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTD
GLEYVCPQCSVTNFKKKSQKTSNGY

High Scoring Gene Products

Symbol, full name Information P value
AT3G43240 protein from Arabidopsis thaliana 7.9e-291

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  004566
        (745 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2084731 - symbol:AT3G43240 species:3702 "Arabi...  2793  7.9e-291  1


>TAIR|locus:2084731 [details] [associations]
            symbol:AT3G43240 species:3702 "Arabidopsis thaliana"
            [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005622
            "intracellular" evidence=IEA;ISS] [GO:0008270 "zinc ion binding"
            evidence=IEA] InterPro:IPR001606 InterPro:IPR001965 Pfam:PF01388
            PROSITE:PS50016 PROSITE:PS51011 SMART:SM00249 GO:GO:0005634
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0046872
            GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10
            InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
            PROSITE:PS01359 Gene3D:1.10.150.60 SUPFAM:SSF46774 HSSP:Q24573
            EMBL:AL353871 EMBL:BT010580 IPI:IPI00522764 PIR:T49238
            RefSeq:NP_189910.2 UniGene:At.36303 ProteinModelPortal:Q6NQ79
            SMR:Q6NQ79 IntAct:Q6NQ79 PaxDb:Q6NQ79 PRIDE:Q6NQ79
            EnsemblPlants:AT3G43240.1 GeneID:823399 KEGG:ath:AT3G43240
            TAIR:At3g43240 eggNOG:NOG285559 HOGENOM:HOG000005827
            InParanoid:Q6NQ79 OMA:LQNRISA PhylomeDB:Q6NQ79
            ProtClustDB:CLSN2680884 Genevestigator:Q6NQ79 Uniprot:Q6NQ79
        Length = 747

 Score = 2793 (988.2 bits), Expect = 7.9e-291, P = 7.9e-291
 Identities = 528/745 (70%), Positives = 616/745 (82%)

Query:     2 MFHAQSSSRNHCSLLAVLS-RKFVXXXXXXXXXXXXXXYPFPEIASSGRLEVHLLSSPST 60
             MFH Q  SRN C+++AV+S  +                YPFP+++SSGRL+  +L++P+ 
Sbjct:     1 MFHGQGFSRNRCNVVAVVSGAELCDTNNQIDGTSHQPKYPFPDLSSSGRLKFQVLNNPTP 60

Query:    61 DEFRRLLESSEPNIVYLQGEKINDSEEIGSLVWGDVDLSTPEALCGLFGSTLPTTVYLEI 120
             +EF+  + SS  + VYLQGE   DS+E+G LV G  D STP+AL  LFGSTLPTTVYLE+
Sbjct:    61 EEFQVAVNSSATDFVYLQGEHSGDSDEVGPLVLGYTDFSTPDALVTLFGSTLPTTVYLEL 120

Query:   121 PNGENFAEALHSRGVPYVIYWKHSFSCYAACHFLQALLSVVQSSCSHTWDAFQLAHASFR 180
             PNGE  A+AL+S+GV YVIYWK+ FS YAACHF  +L SV+QSSCS TWD F +A ASFR
Sbjct:   121 PNGEELAQALYSKGVQYVIYWKNVFSKYAACHFRHSLFSVIQSSCSDTWDVFHVAEASFR 180

Query:   181 LYCVRNNIVMASNS-QKGSSKLGPHLLGDPPKIDIALSEMDVQGEENSPENLPAIKIYDD 239
             LYC  +N V+ SNS +K + ++GP LLG+PPKID+   E D   EENS E+LP+IKIYD+
Sbjct:   181 LYCTSDNAVLPSNSNRKMNYEMGPCLLGEPPKIDVVSPEADELEEENSLESLPSIKIYDE 240

Query:   240 DVTMRFLVCGVPCTLDTSLLGPLEDGLNALLNIEIRGSKLHNRTSAPPPPLQAGAFSRGV 299
             DVT+RFL+CG PCT+DT LLG L DGLNALL IE+RGSKLHNR+SAP PPLQAG F+RGV
Sbjct:   241 DVTVRFLLCGPPCTVDTFLLGSLMDGLNALLRIEMRGSKLHNRSSAPAPPLQAGTFTRGV 300

Query:   300 VTMRCDLSTCSSAHISLLVSGSAQTCFNDQLLENHIKNELIENSQLVHALPNSGDNRLPP 359
             VTMRCD+STCSSAHIS+LVSG+AQTCF+DQLLENHIK+E++E  QLVH++ NS + +   
Sbjct:   301 VTMRCDVSTCSSAHISMLVSGNAQTCFSDQLLENHIKHEVVEKIQLVHSVVNSEETKRGF 360

Query:   360 SEPRKSASIACGASVFEVSMKVSTWASQVLRQLAPDVSYRSLVMLGIASIQGLSVASFEK 419
             SEPR+SASIACGASV EVSM+V TWA QVLRQLAPDVSYRSLV+LG+ASIQGLSVASFEK
Sbjct:   361 SEPRRSASIACGASVCEVSMQVPTWALQVLRQLAPDVSYRSLVVLGVASIQGLSVASFEK 420

Query:   420 DDAERLLFFCTRQGKADHTENSVLTRPPSWLTSPAPSRKRSEPCRESKGVESENVCNVRP 479
             DDAERLLFFC +Q       +++L++ P+WLT P P+RKRSEPCRESK  E EN      
Sbjct:   421 DDAERLLFFCGQQINDTSNHDALLSKIPNWLTPPLPTRKRSEPCRESK--EIENGGPTSR 478

Query:   480 KLNSAAMRPIPHTRHYKMLPFSGFSEIERYDGDQVKANLPVAPLKHSSAGPTPVTHRKSL 539
             K+N AA+RPIPHTR +KM+PFSG+SEI R+DGD  K +LP+ P KH ++G TPVTHRK+ 
Sbjct:   479 KINVAALRPIPHTRRHKMIPFSGYSEIGRFDGDHTKGSLPMPP-KHGASGGTPVTHRKAF 537

Query:   540 SSSYQAQQIISLNPLPLKKHGCGRAPIQVCSEEEFLRDVMQFLILRGHTRLVPQGGLAEF 599
             S SYQ +QIISLNPLPLKKH CGRA IQVCSEEEFLRDVMQFL++RGHTRLVP GGLAEF
Sbjct:   538 SGSYQRKQIISLNPLPLKKHDCGRAHIQVCSEEEFLRDVMQFLLIRGHTRLVPPGGLAEF 597

Query:   600 PDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRH 659
             PDA+LN+KRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRH
Sbjct:   598 PDAVLNSKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRH 657

Query:   660 YETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKT 719
             YETYLLEYE AHDDVDGECCL+C SS AGDWVNCG CGEWAHFGCDRR GLGAFKDYAKT
Sbjct:   658 YETYLLEYEYAHDDVDGECCLICRSSTAGDWVNCGSCGEWAHFGCDRRPGLGAFKDYAKT 717

Query:   720 DGLEYVCPQCSVTNFKKKSQKTSNG 744
             DGLEYVCP CSV+N++KKSQKTSNG
Sbjct:   718 DGLEYVCPNCSVSNYRKKSQKTSNG 742


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.134   0.409    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      745       731   0.00087  121 3  11 22  0.40    34
                                                     37  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  628 (67 KB)
  Total size of DFA:  404 KB (2195 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  66.54u 0.09s 66.63t   Elapsed:  00:00:03
  Total cpu time:  66.54u 0.09s 66.63t   Elapsed:  00:00:03
  Start:  Mon May 20 22:23:00 2013   End:  Mon May 20 22:23:03 2013

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