BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004566
(745 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NQ79|ARID4_ARATH AT-rich interactive domain-containing protein 4 OS=Arabidopsis
thaliana GN=ARID4 PE=2 SV=1
Length = 747
Score = 1090 bits (2819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/745 (71%), Positives = 622/745 (83%), Gaps = 5/745 (0%)
Query: 2 MFHAQSSSRNHCSLLAVLS-RKFVDDKQKQAATDDKPKYPFPEIASSGRLEVHLLSSPST 60
MFH Q SRN C+++AV+S + D + T +PKYPFP+++SSGRL+ +L++P+
Sbjct: 1 MFHGQGFSRNRCNVVAVVSGAELCDTNNQIDGTSHQPKYPFPDLSSSGRLKFQVLNNPTP 60
Query: 61 DEFRRLLESSEPNIVYLQGEKINDSEEIGSLVWGDVDLSTPEALCGLFGSTLPTTVYLEI 120
+EF+ + SS + VYLQGE DS+E+G LV G D STP+AL LFGSTLPTTVYLE+
Sbjct: 61 EEFQVAVNSSATDFVYLQGEHSGDSDEVGPLVLGYTDFSTPDALVTLFGSTLPTTVYLEL 120
Query: 121 PNGENFAEALHSRGVPYVIYWKHSFSCYAACHFLQALLSVVQSSCSHTWDAFQLAHASFR 180
PNGE A+AL+S+GV YVIYWK+ FS YAACHF +L SV+QSSCS TWD F +A ASFR
Sbjct: 121 PNGEELAQALYSKGVQYVIYWKNVFSKYAACHFRHSLFSVIQSSCSDTWDVFHVAEASFR 180
Query: 181 LYCVRNNIVMASNS-QKGSSKLGPHLLGDPPKIDIALSEMDVQGEENSPENLPAIKIYDD 239
LYC +N V+ SNS +K + ++GP LLG+PPKID+ E D EENS E+LP+IKIYD+
Sbjct: 181 LYCTSDNAVLPSNSNRKMNYEMGPCLLGEPPKIDVVSPEADELEEENSLESLPSIKIYDE 240
Query: 240 DVTMRFLVCGVPCTLDTSLLGPLEDGLNALLNIEIRGSKLHNRTSAPPPPLQAGAFSRGV 299
DVT+RFL+CG PCT+DT LLG L DGLNALL IE+RGSKLHNR+SAP PPLQAG F+RGV
Sbjct: 241 DVTVRFLLCGPPCTVDTFLLGSLMDGLNALLRIEMRGSKLHNRSSAPAPPLQAGTFTRGV 300
Query: 300 VTMRCDLSTCSSAHISLLVSGSAQTCFNDQLLENHIKNELIENSQLVHALPNSGDNRLPP 359
VTMRCD+STCSSAHIS+LVSG+AQTCF+DQLLENHIK+E++E QLVH++ NS + +
Sbjct: 301 VTMRCDVSTCSSAHISMLVSGNAQTCFSDQLLENHIKHEVVEKIQLVHSVVNSEETKRGF 360
Query: 360 SEPRKSASIACGASVFEVSMKVSTWASQVLRQLAPDVSYRSLVMLGIASIQGLSVASFEK 419
SEPR+SASIACGASV EVSM+V TWA QVLRQLAPDVSYRSLV+LG+ASIQGLSVASFEK
Sbjct: 361 SEPRRSASIACGASVCEVSMQVPTWALQVLRQLAPDVSYRSLVVLGVASIQGLSVASFEK 420
Query: 420 DDAERLLFFCTRQGKADHTENSVLTRPPSWLTSPAPSRKRSEPCRESKGVESENVCNVRP 479
DDAERLLFFC +Q +++L++ P+WLT P P+RKRSEPCRESK E EN
Sbjct: 421 DDAERLLFFCGQQINDTSNHDALLSKIPNWLTPPLPTRKRSEPCRESK--EIENGGPTSR 478
Query: 480 KLNSAAMRPIPHTRHYKMLPFSGFSEIERYDGDQVKANLPVAPLKHSSAGPTPVTHRKSL 539
K+N AA+RPIPHTR +KM+PFSG+SEI R+DGD K +LP+ P KH ++G TPVTHRK+
Sbjct: 479 KINVAALRPIPHTRRHKMIPFSGYSEIGRFDGDHTKGSLPMPP-KHGASGGTPVTHRKAF 537
Query: 540 SSSYQAQQIISLNPLPLKKHGCGRAPIQVCSEEEFLRDVMQFLILRGHTRLVPQGGLAEF 599
S SYQ +QIISLNPLPLKKH CGRA IQVCSEEEFLRDVMQFL++RGHTRLVP GGLAEF
Sbjct: 538 SGSYQRKQIISLNPLPLKKHDCGRAHIQVCSEEEFLRDVMQFLLIRGHTRLVPPGGLAEF 597
Query: 600 PDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRH 659
PDA+LN+KRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRH
Sbjct: 598 PDAVLNSKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRH 657
Query: 660 YETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKT 719
YETYLLEYE AHDDVDGECCL+C SS AGDWVNCG CGEWAHFGCDRR GLGAFKDYAKT
Sbjct: 658 YETYLLEYEYAHDDVDGECCLICRSSTAGDWVNCGSCGEWAHFGCDRRPGLGAFKDYAKT 717
Query: 720 DGLEYVCPQCSVTNFKKKSQKTSNG 744
DGLEYVCP CSV+N++KKSQKTSNG
Sbjct: 718 DGLEYVCPNCSVSNYRKKSQKTSNG 742
>sp|C6KTD2|HKNMT_PLAF7 Putative histone-lysine N-methyltransferase PFF1440w OS=Plasmodium
falciparum (isolate 3D7) GN=PFF1440w PE=3 SV=1
Length = 6753
Score = 45.4 bits (106), Expect = 0.001, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 679 CLLCHSSAAGD----WVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTNF 734
C++C+ D WV C +C W H CD+ + + ++Y CP CS+ F
Sbjct: 1764 CIMCNEKYDEDDSKKWVQCDVCKFWIHLSCDKNESRNI--ETLSNKNIDYKCPTCSIGTF 1821
Query: 735 KKKSQK 740
K ++
Sbjct: 1822 HDKIER 1827
>sp|Q3UXZ9|KDM5A_MOUSE Lysine-specific demethylase 5A OS=Mus musculus GN=Kdm5a PE=1 SV=2
Length = 1690
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 14/102 (13%)
Query: 573 EFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINW 632
+FL + +F L+G T +P ++ K LDL+ L + V S+GGF +
Sbjct: 89 DFLDQLAKFWELQGSTLKIP----------VVERKILDLYALSKIVASKGGFEIVT---- 134
Query: 633 KGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDV 674
K + +SK+ + G G+ LK HYE L YEL V
Sbjct: 135 KEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYPYELFQSGV 176
>sp|P29375|KDM5A_HUMAN Lysine-specific demethylase 5A OS=Homo sapiens GN=KDM5A PE=1 SV=3
Length = 1690
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 14/102 (13%)
Query: 573 EFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINW 632
+FL + +F L+G T +P ++ K LDL+ L + V S+GGF +
Sbjct: 89 DFLDQLAKFWELQGSTLKIP----------VVERKILDLYALSKIVASKGGFEMVT---- 134
Query: 633 KGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDV 674
K + +SK+ + G G+ LK HYE L YEL V
Sbjct: 135 KEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYPYELFQSGV 176
>sp|A6PWV5|ARI3C_MOUSE AT-rich interactive domain-containing protein 3C OS=Mus musculus
GN=Arid3c PE=2 SV=2
Length = 409
Score = 42.0 bits (97), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 16/99 (16%)
Query: 572 EEFLRDVMQFLILRGH-TRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGF-HVGNG 629
+EFL D+ F+ RG VP I+ + LDL+ L+R V ++GG V N
Sbjct: 114 KEFLDDLFSFMQKRGTPVNRVP----------IMAKQVLDLYALFRLVTAKGGLVEVINR 163
Query: 630 INWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYE 668
W+ R +L +T TL+ Y YL YE
Sbjct: 164 KVWR----EVTRGLSLPTTITSAAFTLRTQYMKYLYPYE 198
>sp|A6NKF2|ARI3C_HUMAN AT-rich interactive domain-containing protein 3C OS=Homo sapiens
GN=ARID3C PE=2 SV=1
Length = 412
Score = 41.6 bits (96), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 16/99 (16%)
Query: 572 EEFLRDVMQFLILRGH-TRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGF-HVGNG 629
+EFL D+ F+ RG VP I+ + LDL+ L+R V ++GG V N
Sbjct: 117 KEFLDDLFSFMQKRGTPVNRVP----------IMAKQVLDLYALFRLVTAKGGLVEVINR 166
Query: 630 INWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYE 668
W+ R +L +T TL+ Y YL YE
Sbjct: 167 KVWR----EVTRGLSLPTTITSAAFTLRTQYMKYLYPYE 201
>sp|Q2N9M9|ACCD_ERYLH Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Erythrobacter litoralis (strain HTCC2594) GN=accD
PE=3 SV=1
Length = 282
Score = 40.4 bits (93), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 11/132 (8%)
Query: 36 KPKYPFPEIASSGRLEVHLLS----SPSTDEFRRLLESSEPNIVYLQGEKINDSEEIGSL 91
K Y A R++ +LS +T RRL E+ P IV L +
Sbjct: 152 KCGYIVVTAAGGARMQEGILSLMQMPKATVMTRRLREAGLPYIVVLT-DPTTGGVTASYA 210
Query: 92 VWGDVDLSTPEALCGLFGS-TLPTTVYLEIPNGENFAEALHSRGVPYVIYWKHSFSCYAA 150
+ GDV ++ P AL G G + T+ ++P+G AE LH G+ + +H
Sbjct: 211 MLGDVHIAEPGALIGFAGQRVIQDTIREQLPDGFQRAEYLHKHGMVDRVVHRHQLK---- 266
Query: 151 CHFLQALLSVVQ 162
H L LL +Q
Sbjct: 267 -HELATLLGYLQ 277
>sp|Q9VMJ7|KDM5_DROME Lysine-specific demethylase lid OS=Drosophila melanogaster GN=lid
PE=1 SV=1
Length = 1838
Score = 40.4 bits (93), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
Query: 574 FLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWK 633
FL + +F L+G + +P ++ K LDL+ L+R V GG K
Sbjct: 232 FLDQIAKFWELQGSSLKIP----------MVERKALDLYTLHRIVQEEGGMEQTT----K 277
Query: 634 GQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYEL 669
+ ++K+ N VG TLK HYE L +E+
Sbjct: 278 DRKWAKVANRMQYPSSKSVGATLKAHYERILHPFEV 313
>sp|Q4H3P5|DRI_CIOIN Protein dead ringer homolog OS=Ciona intestinalis GN=Ci-DRIL1/2
PE=2 SV=1
Length = 571
Score = 40.0 bits (92), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 16/99 (16%)
Query: 572 EEFLRDVMQFLILRGH-TRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGF-HVGNG 629
+EFL D+ F+ RG +P I+ + LDL+ LYR VV +GG V N
Sbjct: 253 KEFLDDLFSFMQKRGTPVNRIP----------IMAKQVLDLYQLYRLVVEKGGLVEVINK 302
Query: 630 INWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYE 668
W+ +K N L + +T TL+ Y YL +E
Sbjct: 303 KIWRE--ITKGLN--LPSSITSAAFTLRTQYMKYLYPFE 337
>sp|A7IFZ8|ACCD_XANP2 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 /
Py2) GN=accD PE=3 SV=1
Length = 297
Score = 38.9 bits (89), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 40 PFPEIASSG--RLEVHLLS----SPSTDEFRRLLESSEPNIVYLQGEKINDSEEIGSLVW 93
PF A+SG R++ +LS +T + L E+ +P IV L +++
Sbjct: 157 PFIMFAASGGARMQEGILSLMQMPRTTAAIQELRETRKPYIVVLTNPTTGGVTASYAML- 215
Query: 94 GDVDLSTPEALCGLFG-STLPTTVYLEIPNGENFAEALHSRGVPYVIYWKHSF 145
GD+ ++ P AL G G + T+ ++P+G AE LH G+ ++ +H
Sbjct: 216 GDIQIAEPGALIGFAGPRVIEQTIREKLPDGFQRAEYLHEHGMLDMVVHRHQM 268
>sp|Q2NKQ1|SGSM1_HUMAN Small G protein signaling modulator 1 OS=Homo sapiens GN=SGSM1 PE=1
SV=2
Length = 1148
Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 24 VDDKQKQAATDDKPKYPFPEIASSGRLEVHLLSSPSTDEFRRLLES-----SEPNIVYLQ 78
VDD+Q AT + + P E+A LE LL++ S DEF + S E + V ++
Sbjct: 811 VDDRQSSEATTSQDEAPREELAVQDSLESDLLANESMDEFMSITGSLDMALPEKDDVVME 870
Query: 79 GEKINDSEEIGSLVWGDVDLSTPEALCGLFGSTLPTTVYLEIPNGENFAEALHSRGVPY 137
G + +++E+ G D +LS + LF P L + N + S GV Y
Sbjct: 871 GWRSSETEKHGQADSED-NLSEEPEMESLF----PALASLAVTTSANEVSPVSSSGVTY 924
>sp|Q24573|DRI_DROME Protein dead ringer OS=Drosophila melanogaster GN=retn PE=1 SV=2
Length = 911
Score = 38.5 bits (88), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 28/126 (22%)
Query: 544 QAQQIISLNPLPLKKHGCGRAPIQVCSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAI 603
Q +Q+ +N P +K EFL D+ F+ RG P L I
Sbjct: 283 QVRQLYEINDDPKRK--------------EFLDDLFSFMQKRG----TPINRLP-----I 319
Query: 604 LNAKRLDLFNLYREVVSRGGF-HVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYET 662
+ LDL+ LY V++RGG V N W+ ++ + L + +T TL+ Y
Sbjct: 320 MAKSVLDLYELYNLVIARGGLVDVINKKLWQ-EIIKGLH---LPSSITSAAFTLRTQYMK 375
Query: 663 YLLEYE 668
YL YE
Sbjct: 376 YLYPYE 381
>sp|Q5F3R2|KDM5B_CHICK Lysine-specific demethylase 5B OS=Gallus gallus GN=KDM5B PE=2 SV=1
Length = 1522
Score = 37.7 bits (86), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 14/96 (14%)
Query: 574 FLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWK 633
FL + +F L+G T +P + K LDLF L R V GGF V K
Sbjct: 81 FLDQIAKFWELQGCTLKIPH----------VERKILDLFQLNRLVAEEGGFDVVC----K 126
Query: 634 GQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYEL 669
+ ++K+ VG+ ++ HYE L Y L
Sbjct: 127 ERKWTKIATRMGFAPGKAVGSHIRAHYERILYPYNL 162
>sp|Q8MQH7|DRI_STRPU Protein dead ringer homolog OS=Strongylocentrotus purpuratus GN=dri
PE=2 SV=1
Length = 490
Score = 37.4 bits (85), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 572 EEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGF-HVGNGI 630
+EFL D+ ++ RG P + I+ + LDL+ LY VV++GG V N
Sbjct: 206 KEFLDDLFSYMQKRG----TPVNRIP-----IMAKQVLDLYELYNLVVAKGGLVEVINKK 256
Query: 631 NWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYE 668
W+ +K N L +T TL+ Y YL YE
Sbjct: 257 QWR--EITKGLN--LPASITSAAFTLRTQYMKYLYPYE 290
>sp|O02326|CFI1_CAEEL AT-rich interactive domain-containing protein cfi-1
OS=Caenorhabditis elegans GN=cfi-1 PE=1 SV=3
Length = 467
Score = 37.0 bits (84), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 603 ILNAKRLDLFNLYREVVSRGGF-HVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYE 661
I+ + LDL+ LYR VV GG + N W+ + L + +T TL+ Y+
Sbjct: 207 IMAKQVLDLYELYRLVVQHGGLVEIINKKLWR----EITKGLNLPSSITSAAFTLRTQYQ 262
Query: 662 TYLLEYELAHDDVDGECCL 680
YL +YE + + + L
Sbjct: 263 KYLYDYECEKEKLSNQSDL 281
>sp|Q9M364|ATX3_ARATH Histone-lysine N-methyltransferase ATX3 OS=Arabidopsis thaliana
GN=ATX3 PE=2 SV=2
Length = 1018
Score = 36.2 bits (82), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 676 GECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSV 731
G C + H S GDWV C C W H CD + + + + Y CP C V
Sbjct: 366 GICKRIWHPSDDGDWVCCDGCDVWVHAECDNITN----ERFKELEHNNYYCPDCKV 417
>sp|Q5RFL5|ELOV5_PONAB Elongation of very long chain fatty acids protein 5 OS=Pongo abelii
GN=ELOVL5 PE=2 SV=1
Length = 299
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 18/123 (14%)
Query: 92 VWGDVDLSTPEALCG--LFGSTLPTTVYLEIPNGENFAEALHSRGVPYVIYWKHSFSCYA 149
+W V P CG FG+TL + +++ + + + L R PY ++WK +
Sbjct: 153 IWWFVMNWVP---CGHSYFGATLNSFIHVLMYSYYGLSSVLSMR--PY-LWWKKYIT--- 203
Query: 150 ACHFLQALLSVVQSSCSHTWD-AFQLAHASFR------LYCVRNNIVMASNSQKGSSKLG 202
LQ++L+++Q+SC W F L F+ L + N + S ++KG+S+
Sbjct: 204 QGQLLQSVLTIIQTSCGVIWPCTFPLGWLYFQIGYMISLIALFTNFYIQSYNKKGASRRK 263
Query: 203 PHL 205
HL
Sbjct: 264 DHL 266
>sp|Q68CP9|ARID2_HUMAN AT-rich interactive domain-containing protein 2 OS=Homo sapiens
GN=ARID2 PE=1 SV=2
Length = 1835
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Query: 574 FLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWK 633
FL ++ QF H+R P + P + K LDL LY V + GGF + N
Sbjct: 19 FLDELRQF----HHSRGSP---FKKIP--AVGGKELDLHGLYTRVTTLGGFAKVSEKNQW 69
Query: 634 GQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAH 671
G++ + + LK++Y YL +YE H
Sbjct: 70 GEIVEEFN---FPRSCSNAAFALKQYYLRYLEKYEKVH 104
>sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9 OS=Arabidopsis thaliana GN=HMGB9
PE=2 SV=1
Length = 338
Score = 35.0 bits (79), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 597 AEFPDAILNAKRLDLFNLYREVVSRGGFH-VGNGINWK--GQVFSKMRNHTLTNRMTGVG 653
+F ++ K LDL LY EV RGG+ V W+ G VF + T
Sbjct: 57 TKFMIPVIGGKELDLHVLYVEVTRRGGYEKVVVEKKWREVGGVFR------FSATTTSAS 110
Query: 654 NTLKRHYETYLLEYELAH 671
L++HY L YE H
Sbjct: 111 FVLRKHYLNLLFHYEQVH 128
>sp|B3EFW3|ACCD_CHLL2 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Chlorobium limicola (strain DSM 245 / NBRC 103803)
GN=accD PE=3 SV=1
Length = 279
Score = 34.7 bits (78), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 94 GDVDLSTPEALCGLFG-STLPTTVYLEIPNGENFAEALHSRG 134
GDV+LS P+AL G G + T+ ++P G AE LH +G
Sbjct: 214 GDVNLSEPKALIGFAGPRVIRDTIKRDLPEGFQRAEFLHEQG 255
>sp|Q9FYH1|HAC2_ARATH Histone acetyltransferase HAC2 OS=Arabidopsis thaliana GN=HAC2 PE=2
SV=2
Length = 1367
Score = 34.3 bits (77), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 689 DWVNCGICGEWAHFGCDRRQGL-GAFKDYAKTDGLEYVCPQC 729
+WV C C +W H C GL KD KT EY+CP C
Sbjct: 727 EWVQCESCEKWQHQIC----GLYNKLKDEDKT--AEYICPTC 762
>sp|A4YJI4|ACCD_BRASO Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Bradyrhizobium sp. (strain ORS278) GN=accD PE=3 SV=1
Length = 312
Score = 34.3 bits (77), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
Query: 38 KYPFPEIASSG--RLE---VHLLSSPSTDEFRRLLESSEPNIVYLQGEKINDSEEIGSLV 92
K PF A+SG R++ + L+ P T ++L + + +Q +
Sbjct: 154 KSPFIVFAASGGARMQEGILSLMQMPRTTVAVQMLREARLPYIVVQTNPTTGGVTASYAM 213
Query: 93 WGDVDLSTPEALCGLFGS-TLPTTVYLEIPNGENFAEALHSRGVPYVIYWKHSFSCYAA- 150
GDV ++ P AL G G+ + T+ ++P G AE L G+ ++ +H A
Sbjct: 214 LGDVHIAEPGALIGFAGARVIEQTIREKLPEGFQRAEYLLDHGMVDMVVHRHDLRPTLAR 273
Query: 151 -CHFL 154
C L
Sbjct: 274 LCRLL 278
>sp|Q8GZ42|ATX5_ARATH Histone-lysine N-methyltransferase ATX5 OS=Arabidopsis thaliana
GN=ATX5 PE=2 SV=1
Length = 1043
Score = 33.9 bits (76), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 690 WVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQC 729
WV C C W H CD + FKD +TD Y CP C
Sbjct: 431 WVRCDGCKVWIHSACD-QISHKHFKDLGETD---YYCPTC 466
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 284,874,515
Number of Sequences: 539616
Number of extensions: 12416991
Number of successful extensions: 28135
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 28096
Number of HSP's gapped (non-prelim): 54
length of query: 745
length of database: 191,569,459
effective HSP length: 125
effective length of query: 620
effective length of database: 124,117,459
effective search space: 76952824580
effective search space used: 76952824580
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)