Query 004566
Match_columns 745
No_of_seqs 181 out of 262
Neff 3.4
Searched_HMMs 29240
Date Tue Mar 26 18:13:22 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004566.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1868-1871//hhsearch_pdb/004566hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rq5_A Protein jumonji; develo 1.0 1 1 171.5 7.2 99 559-673 4-103 (121)
2 1ig6_A MRF-2, modulator recogn 1.0 1 1 164.8 3.8 90 569-671 2-92 (107)
3 2kk0_A AT-rich interactive dom 1.0 1 1 164.1 6.8 90 571-673 35-125 (145)
4 1c20_A DEAD ringer protein; DN 1.0 1 1 163.1 6.4 92 569-673 21-113 (128)
5 2eqy_A RBP2 like, jumonji, at 1.0 1 1 161.1 7.0 95 568-677 11-106 (122)
6 2cxy_A BAF250B subunit, HBAF25 1.0 1 1 159.8 6.8 89 569-671 20-109 (125)
7 2jxj_A Histone demethylase jar 1.0 1 1 158.9 4.1 92 565-671 2-94 (96)
8 2jrz_A Histone demethylase jar 1.0 1 1 157.7 7.6 94 567-675 8-102 (117)
9 1kkx_A Transcription regulator 1.0 1 1 156.8 6.2 90 566-673 14-104 (123)
10 2lm1_A Lysine-specific demethy 1.0 1 1 153.9 5.5 89 570-673 15-104 (107)
No 1
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=171.47 Aligned_cols=99 Identities=20% Similarity=0.286 Sum_probs=86.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHCCCEEECCC-CCCHHHHH
Q ss_conf 78788987679988899999999998198232489998877773017810216678999872394220257-78768898
Q 004566 559 HGCGRAPIQVCSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNG-INWKGQVF 637 (745)
Q Consensus 559 h~~~R~pl~~~~eEeFL~dL~kFhesRGtp~eiP~G~ls~lP~PvVgGK~LDLykLYkeV~sRGGF~kVnk-kkWk~EV~ 637 (745)
|...|.+ ..+++||++|.+||++||++++. .|+|+|++||||+||++|+++|||++|++ ++|+ +|+
T Consensus 4 ~~~~~r~---~~~~~Fl~~L~~F~~~rGtpl~~---------~P~i~gk~lDL~~Ly~~V~~~GG~~~Vt~~k~W~-~Va 70 (121)
T 2rq5_A 4 GSLGRRW---GPNVQRLACIKKHLRSQGITMDE---------LPLIGGCELDLACFFRLINEMGGMQQVTDLKKWN-KLA 70 (121)
T ss_dssp CCCSSCC---CHHHHHHHHHHHHHHHTTCCCSS---------CCEETTEECCHHHHHHHHHHTTSHHHHHHTTCHH-HHH
T ss_pred HHHHHHC---CCCHHHHHHHHHHHHHCCCCCCC---------CCCCCCEECCHHHHHHHHHHCCCHHHHCCCCCHH-HHH
T ss_conf 7763750---98099999999999984998987---------8718998464999999999757588843657379-999
Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 641387789853467899999999955533201676
Q 004566 638 SKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDD 673 (745)
Q Consensus 638 s~Lgn~~~p~t~Tsag~~LK~hYERyLleYE~aHDD 673 (745)
..|+ ++.++|++++.||++|+|||++||...++
T Consensus 71 ~~lg---~p~~~~sa~~~Lr~~Y~k~L~~YE~~~~~ 103 (121)
T 2rq5_A 71 DMLR---IPKTAQDRLAKLQEAYCQYLLSYDSLSPE 103 (121)
T ss_dssp HHTC---CCTTCSSHHHHHHHHHHTTHHHHHHCCHH
T ss_pred HHHC---CCCCCCCHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 9849---99776759999999999983998785998
No 2
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=1.00 E-value=1 Score=164.82 Aligned_cols=90 Identities=21% Similarity=0.421 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHCCCEEECCC-CCCHHHHHHHCCCCCCCC
Q ss_conf 9988899999999998198232489998877773017810216678999872394220257-787688986413877898
Q 004566 569 CSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNG-INWKGQVFSKMRNHTLTN 647 (745)
Q Consensus 569 ~~eEeFL~dL~kFhesRGtp~eiP~G~ls~lP~PvVgGK~LDLykLYkeV~sRGGF~kVnk-kkWk~EV~s~Lgn~~~p~ 647 (745)
++++.|+++|.+||++||+++.. .|+++|++||||+||++|+++|||++|++ ++|+ +|+..|+ ++.
T Consensus 2 ~e~~~Fl~~L~~F~~~rg~~~~~---------~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~-~Va~~lg---~~~ 68 (107)
T 1ig6_A 2 ADEQAFLVALYKYMKERKTPIER---------IPYLGFKQINLWTMFQAAQKLGGYETITARRQWK-HIYDELG---GNP 68 (107)
T ss_dssp HHHHHHHHHHHHHHHTTTCCGGG---------CCCSSSSSCCHHHHHHHHHHTTHHHHHHHHTTHH-HHHHHHT---CCT
T ss_pred CHHHHHHHHHHHHHHHCCCCCCC---------CCEECCEEECHHHHHHHHHHHCCHHHHCCCCCHH-HHHHHHC---CCC
T ss_conf 25999999999999984998876---------9608998510999999998815898713547199-9999839---997
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 534678999999999555332016
Q 004566 648 RMTGVGNTLKRHYETYLLEYELAH 671 (745)
Q Consensus 648 t~Tsag~~LK~hYERyLleYE~aH 671 (745)
++|++++.||++|+|||++||...
T Consensus 69 ~~~s~~~~Lk~~Y~k~L~~yE~~~ 92 (107)
T 1ig6_A 69 GSTSAATCTRRHYERLILPYERFI 92 (107)
T ss_dssp TCTTTTTTHHHHHHHHTTTTHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 878599999999999989999998
No 3
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=164.07 Aligned_cols=90 Identities=30% Similarity=0.497 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHCCCEEECCC-CCCHHHHHHHCCCCCCCCCC
Q ss_conf 88899999999998198232489998877773017810216678999872394220257-78768898641387789853
Q 004566 571 EEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNG-INWKGQVFSKMRNHTLTNRM 649 (745)
Q Consensus 571 eEeFL~dL~kFhesRGtp~eiP~G~ls~lP~PvVgGK~LDLykLYkeV~sRGGF~kVnk-kkWk~EV~s~Lgn~~~p~t~ 649 (745)
+++|+++|.+||+.||+++.. .|+++|++||||+||++|+++|||++|++ ++|+ +|+..|+ ++.++
T Consensus 35 ~~~Fl~~L~~F~~~rG~pl~~---------~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~~~W~-~Va~~lg---~~~~~ 101 (145)
T 2kk0_A 35 RKEFLDDLFSFMQKRGTPVNR---------IPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWR-EITKGLN---LPTSI 101 (145)
T ss_dssp HHHHHHHHHHHHHHTTCCCSS---------CCEETTEECCHHHHHHHHHHHTCHHHHHHHTCHH-HHHHHTT---CCTTS
T ss_pred HHHHHHHHHHHHHHCCCCCCC---------CEEECCEEECHHHHHHHHHHHCCHHHHCCCCCHH-HHHHHHC---CCCCC
T ss_conf 899999999999984998754---------5459999711999999998717888705657489-9999839---99776
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 467899999999955533201676
Q 004566 650 TGVGNTLKRHYETYLLEYELAHDD 673 (745)
Q Consensus 650 Tsag~~LK~hYERyLleYE~aHDD 673 (745)
|++++.||++|+|||++||.....
T Consensus 102 tsa~~~Lk~~Y~k~L~~yE~~~~g 125 (145)
T 2kk0_A 102 TSAAFTLRTQYMKYLYPYECEKRG 125 (145)
T ss_dssp TTHHHHHHHHHHHHSSHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 738999999999998999999706
No 4
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=1.00 E-value=1 Score=163.11 Aligned_cols=92 Identities=29% Similarity=0.520 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHCCCEEECCC-CCCHHHHHHHCCCCCCCC
Q ss_conf 9988899999999998198232489998877773017810216678999872394220257-787688986413877898
Q 004566 569 CSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNG-INWKGQVFSKMRNHTLTN 647 (745)
Q Consensus 569 ~~eEeFL~dL~kFhesRGtp~eiP~G~ls~lP~PvVgGK~LDLykLYkeV~sRGGF~kVnk-kkWk~EV~s~Lgn~~~p~ 647 (745)
..++.|+++|.+||+.||+++.. .|+++||+||||+||++|+++|||++|++ ++|+ +|+..|+ ++.
T Consensus 21 ~~~~~Fl~~L~~F~~~rG~~l~~---------~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~k~W~-~Va~~lg---~~~ 87 (128)
T 1c20_A 21 PKRKEFLDDLFSFMQKRGTPINR---------LPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQ-EIIKGLH---LPS 87 (128)
T ss_dssp HHHHHHHHHHHHHHTTTSSCSSC---------CCEETTEECCHHHHHHHHHHHTCHHHHHHHTTHH-HHHHHTC---CCS
T ss_pred HHHHHHHHHHHHHHHHCCCCCCC---------CEEECCEEECHHHHHHHHHHHCCHHHCCCCCCHH-HHHHHHC---CCC
T ss_conf 58999999999999982999754---------5128999613999999998706788717537589-9999848---998
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 53467899999999955533201676
Q 004566 648 RMTGVGNTLKRHYETYLLEYELAHDD 673 (745)
Q Consensus 648 t~Tsag~~LK~hYERyLleYE~aHDD 673 (745)
++|++++.||++|+|||++||.....
T Consensus 88 ~~~sa~~~Lk~~Y~k~L~~yE~~~~~ 113 (128)
T 1c20_A 88 SITSAAFTLRTQYMKYLYPYECEKKN 113 (128)
T ss_dssp SCCSHHHHHHHHHHHHTHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 87759999999999998999999873
No 5
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=161.07 Aligned_cols=95 Identities=28% Similarity=0.425 Sum_probs=82.5
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHCCCEEECCC-CCCHHHHHHHCCCCCCC
Q ss_conf 79988899999999998198232489998877773017810216678999872394220257-78768898641387789
Q 004566 568 VCSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNG-INWKGQVFSKMRNHTLT 646 (745)
Q Consensus 568 ~~~eEeFL~dL~kFhesRGtp~eiP~G~ls~lP~PvVgGK~LDLykLYkeV~sRGGF~kVnk-kkWk~EV~s~Lgn~~~p 646 (745)
...++.|+++|.+||+.||+++. .|+++||+||||+||++|+++|||++|++ ++|+ +|+..|+ ++
T Consensus 11 ~~~~~~Fl~~L~~F~~~rG~~l~----------~P~i~gk~lDLy~Ly~~V~~~GG~~~V~~~k~W~-~V~~~lg---~~ 76 (122)
T 2eqy_A 11 TRVKLNFLDQIAKYWELQGSTLK----------IPHVERKILDLFQLNKLVAEEGGFAVVCKDRKWT-KIATKMG---FA 76 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCC----------CCBSSSSBCCHHHHHHHHHHHTCHHHHHHTTTHH-HHHHHTT---CC
T ss_pred CHHHHHHHHHHHHHHHHCCCCCC----------CCEECCEECCHHHHHHHHHHCCCHHHHCCCCCHH-HHHHHHC---CC
T ss_conf 03899999999999998199898----------9709998523999999999835879873778379-9999839---99
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 8534678999999999555332016765532
Q 004566 647 NRMTGVGNTLKRHYETYLLEYELAHDDVDGE 677 (745)
Q Consensus 647 ~t~Tsag~~LK~hYERyLleYE~aHDDvd~~ 677 (745)
. ++++++.||++|+|||++||....+....
T Consensus 77 ~-~~~~~~~Lr~~Y~k~L~~yE~~~~~~~~~ 106 (122)
T 2eqy_A 77 P-GKAVGSHIRGHYERILNPYNLFLSGDSLR 106 (122)
T ss_dssp S-SSHHHHHHHHHHHHTHHHHHHHHHCCTTC
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 8-88699999999999949999998138853
No 6
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=1.00 E-value=1 Score=159.78 Aligned_cols=89 Identities=24% Similarity=0.420 Sum_probs=80.1
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHCCCEEECCC-CCCHHHHHHHCCCCCCCC
Q ss_conf 9988899999999998198232489998877773017810216678999872394220257-787688986413877898
Q 004566 569 CSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNG-INWKGQVFSKMRNHTLTN 647 (745)
Q Consensus 569 ~~eEeFL~dL~kFhesRGtp~eiP~G~ls~lP~PvVgGK~LDLykLYkeV~sRGGF~kVnk-kkWk~EV~s~Lgn~~~p~ 647 (745)
..++.|+++|.+||+.||+++.. .|+++||+||||+||++|+++|||++|++ ++|+ +|+..|+ ++
T Consensus 20 ~~~~~Fl~~L~~F~~~rG~~~~~---------~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~-~Va~~lg---~~- 85 (125)
T 2cxy_A 20 PERKLWVDRYLTFMEERGSPVSS---------LPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWR-ELATNLN---VG- 85 (125)
T ss_dssp TTHHHHHHHHHHHHHHTTCCCCB---------CCEETTEECCHHHHHHHHHHHTSHHHHHHHTCHH-HHHHHTT---SC-
T ss_pred HHHHHHHHHHHHHHHHCCCCCCC---------CEEECCEEECHHHHHHHHHHCCCHHHHCCCCCHH-HHHHHHC---CC-
T ss_conf 16999999999999984998777---------8049999622999999999837899864527489-9999859---99-
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 534678999999999555332016
Q 004566 648 RMTGVGNTLKRHYETYLLEYELAH 671 (745)
Q Consensus 648 t~Tsag~~LK~hYERyLleYE~aH 671 (745)
.++++++.||++|+|||++||..+
T Consensus 86 ~~~s~~~~Lk~~Y~k~L~~yE~~~ 109 (125)
T 2cxy_A 86 TSSSAASSLKKQYIQYLFAFECKI 109 (125)
T ss_dssp SSHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 888299999999999989999999
No 7
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=158.91 Aligned_cols=92 Identities=34% Similarity=0.554 Sum_probs=80.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHCCCEEECCC-CCCHHHHHHHCCCC
Q ss_conf 87679988899999999998198232489998877773017810216678999872394220257-78768898641387
Q 004566 565 PIQVCSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNG-INWKGQVFSKMRNH 643 (745)
Q Consensus 565 pl~~~~eEeFL~dL~kFhesRGtp~eiP~G~ls~lP~PvVgGK~LDLykLYkeV~sRGGF~kVnk-kkWk~EV~s~Lgn~ 643 (745)
|.....+++|+++|.+||++||+++. .|+++||+||||+||++|+++|||++|++ ++|+ +|+..|+
T Consensus 2 p~~~r~~~~F~~~L~~F~~~~g~~l~----------~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~-~v~~~lg-- 68 (96)
T 2jxj_A 2 PLGSRVRLDFLDQLAKFWELQGSTLK----------IPVVERKILDLYALSKIVASKGGFEMVTKEKKWS-KVGSRLG-- 68 (96)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHTCCCC----------CCEETTEECCCHHHHHHHHHHHTTHHHHHHTTHH-HHHHHHT--
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCC----------CCCCCCEECCHHHHHHHHHHCCCHHHHCCCCCHH-HHHHHHC--
T ss_conf 50227999999999999998499898----------8819998413999999999827889873678679-9999868--
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7898534678999999999555332016
Q 004566 644 TLTNRMTGVGNTLKRHYETYLLEYELAH 671 (745)
Q Consensus 644 ~~p~t~Tsag~~LK~hYERyLleYE~aH 671 (745)
++.. +++++.||++|+|||++||...
T Consensus 69 -~~~~-~~~~~~Lk~~Y~k~L~~yE~~~ 94 (96)
T 2jxj_A 69 -YLPG-KGTGSLLKSHYERILYPYELFQ 94 (96)
T ss_dssp -CCSC-SCHHHHHHHHHTTTTHHHHHHH
T ss_pred -CCCC-CCHHHHHHHHHHHHHHHHHHHH
T ss_conf -9975-7699999999999979999786
No 8
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=1.00 E-value=1 Score=157.71 Aligned_cols=94 Identities=22% Similarity=0.456 Sum_probs=82.4
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHCCCEEECCC-CCCHHHHHHHCCCCCC
Q ss_conf 679988899999999998198232489998877773017810216678999872394220257-7876889864138778
Q 004566 567 QVCSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNG-INWKGQVFSKMRNHTL 645 (745)
Q Consensus 567 ~~~~eEeFL~dL~kFhesRGtp~eiP~G~ls~lP~PvVgGK~LDLykLYkeV~sRGGF~kVnk-kkWk~EV~s~Lgn~~~ 645 (745)
.....+.|+++|.+||+.||+++. .|+++||+||||+||++|+++|||++|++ ++|+ +|+..|+ +
T Consensus 8 ~~r~~~~Fl~~L~~F~~~rG~~l~----------~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~-~Va~~lg---~ 73 (117)
T 2jrz_A 8 QTRVKLNYLDQIAKFWEIQGSSLK----------IPNVERRILDLYSLSKIVVEEGGYEAICKDRRWA-RVAQRLN---Y 73 (117)
T ss_dssp STTTHHHHHHHHHHHHHTTTSCCC----------CCEETTEECCHHHHHHHHHHHTCHHHHHHTTTHH-HHHHHTT---C
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCC----------CCEECCEEECHHHHHHHHHHCCCHHHHCCCCCHH-HHHHHHC---C
T ss_conf 056999999999999998299898----------8708998613999999999845888735647389-9999849---9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 985346789999999995553320167655
Q 004566 646 TNRMTGVGNTLKRHYETYLLEYELAHDDVD 675 (745)
Q Consensus 646 p~t~Tsag~~LK~hYERyLleYE~aHDDvd 675 (745)
+.+ +++++.||++|+|||++||.......
T Consensus 74 ~~~-~~a~~~Lk~~Y~k~L~~yE~~~~~~~ 102 (117)
T 2jrz_A 74 PPG-KNIGSLLRSHYERIVYPYEMYQSGAN 102 (117)
T ss_dssp CTT-CTHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CCC-CCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 998-86999999999999799999984588
No 9
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=1.00 E-value=1 Score=156.79 Aligned_cols=90 Identities=20% Similarity=0.265 Sum_probs=79.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHCCCEEECCC-CCCHHHHHHHCCCCC
Q ss_conf 7679988899999999998198232489998877773017810216678999872394220257-787688986413877
Q 004566 566 IQVCSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNG-INWKGQVFSKMRNHT 644 (745)
Q Consensus 566 l~~~~eEeFL~dL~kFhesRGtp~eiP~G~ls~lP~PvVgGK~LDLykLYkeV~sRGGF~kVnk-kkWk~EV~s~Lgn~~ 644 (745)
.....++.|+++|.+||+.||+++.. .|+++||+||||+||++|+++|||++|++ ++|+ +|+..|+
T Consensus 14 ~~~~~~~~Fl~~L~~F~~~rG~pl~~---------~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~k~W~-~Va~~lg--- 80 (123)
T 1kkx_A 14 SNNKQYELFMKSLIENCKKRNMPLQS---------IPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWS-MVAQRLQ--- 80 (123)
T ss_dssp -CCCHHHHHHHHHHHHHHHTTCSSSS---------CCCCSSSSCCTTHHHHHHTTTSCHHHHTTSHHHH-HHHHHHT---
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCC---------CCEECCEEECHHHHHHHHHHHCCHHHCCCCCCHH-HHHHHHC---
T ss_conf 76306999999999999983998876---------8508998504999999998815877526236189-9999978---
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 89853467899999999955533201676
Q 004566 645 LTNRMTGVGNTLKRHYETYLLEYELAHDD 673 (745)
Q Consensus 645 ~p~t~Tsag~~LK~hYERyLleYE~aHDD 673 (745)
++. ++.||++|+|||++||.....
T Consensus 81 ~~~-----~~~Lr~~Y~k~L~~yE~~~~~ 104 (123)
T 1kkx_A 81 ISD-----YQQLESIYFRILLPYERHMIS 104 (123)
T ss_dssp CCC-----HHHHHHHHHHHHHHHHHHSCT
T ss_pred CCH-----HHHHHHHHHHHHHHHHHHHHC
T ss_conf 986-----999999999997999999867
No 10
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=153.94 Aligned_cols=89 Identities=30% Similarity=0.512 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHCCCEEECCC-CCCHHHHHHHCCCCCCCCC
Q ss_conf 988899999999998198232489998877773017810216678999872394220257-7876889864138778985
Q 004566 570 SEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNG-INWKGQVFSKMRNHTLTNR 648 (745)
Q Consensus 570 ~eEeFL~dL~kFhesRGtp~eiP~G~ls~lP~PvVgGK~LDLykLYkeV~sRGGF~kVnk-kkWk~EV~s~Lgn~~~p~t 648 (745)
.++.|+++|.+||+.||+++. .|+++||+||||+||++|+++|||++|++ ++|+ +|+..|+ ++.
T Consensus 15 ~~~~F~~~L~~F~~~~g~~l~----------~P~i~gk~vdL~~Ly~~V~~~GG~~~V~~~~~W~-~va~~lg---~~~- 79 (107)
T 2lm1_A 15 VKLNFLDQIAKFWELQGSSLK----------IPMVERKALDLYTLHRIVQEEGGMEQTTKDRKWA-KVANRMQ---YPS- 79 (107)
T ss_dssp HHHHHHHHHHHHHTTTCCCCS----------CCCTTTSSCCHHHHHHHHHHHTCHHHHHHHTTHH-HHHHHTT---CCC-
T ss_pred HHHHHHHHHHHHHHHCCCCCC----------CCEECCEEECHHHHHHHHHHHCCHHHHCCCCCHH-HHHHHHC---CCC-
T ss_conf 799999999999998299998----------9829998622999999999824898705568579-9999859---999-
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 3467899999999955533201676
Q 004566 649 MTGVGNTLKRHYETYLLEYELAHDD 673 (745)
Q Consensus 649 ~Tsag~~LK~hYERyLleYE~aHDD 673 (745)
+|++++.||++|+|||++||.....
T Consensus 80 ~~~~~~~lk~~Y~k~L~~yE~~~~~ 104 (107)
T 2lm1_A 80 SKSVGATLKAHYERILHPFEVYTSG 104 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9869999999999996999999852
Done!