Your job contains 1 sequence.
>004567
MKKSKRKPNRKAVRSMEIEEIELLNSWIDSQKPESGTNPLSFPPLGKKEPIGRIGEDSFS
KYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAF
VIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVD
MEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ
LPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLD
MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFC
EKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT
EMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQ
KDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNAEKEDKLMISREK
LLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINVHRPLGTRLVFD
EECNTVPPLAMLADTKNANVSLDQDQKTEYYKKIREELKRADKEDKLLDRQRRREKRIKQ
KMKRKRGGLGDDDDEEDEDNASDKDEESMERGRRKKAKIYFDSDSDNDNDERKQNKDDNG
PNIDSISLAEQEALALKLLNSMHS
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 004567
(744 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2160225 - symbol:AT5G54910 species:3702 "Arabi... 2103 1.0e-217 1
DICTYBASE|DDB_G0284017 - symbol:ddx10 "DEAD/DEAH box heli... 1413 1.6e-149 3
POMBASE|SPAC1093.05 - symbol:SPAC1093.05 "ATP-dependent R... 1285 3.5e-139 3
ASPGD|ASPL0000061778 - symbol:AN0589 species:162425 "Emer... 1308 1.2e-138 2
UNIPROTKB|E9PIF2 - symbol:DDX10 "Probable ATP-dependent R... 1323 1.3e-137 2
UNIPROTKB|Q13206 - symbol:DDX10 "Probable ATP-dependent R... 1323 1.3e-137 2
UNIPROTKB|F1P0I3 - symbol:DDX10 "Probable ATP-dependent R... 1296 6.6e-136 2
UNIPROTKB|Q5ZJF6 - symbol:DDX10 "Probable ATP-dependent R... 1296 6.6e-136 2
MGI|MGI:1924841 - symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) bo... 1300 1.7e-135 2
RGD|1308990 - symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box po... 1301 9.5e-135 2
ZFIN|ZDB-GENE-071022-2 - symbol:ddx10 "DEAD (Asp-Glu-Ala-... 1293 5.2e-134 2
UNIPROTKB|Q08DT0 - symbol:DDX10 "Uncharacterized protein"... 1306 3.0e-133 1
UNIPROTKB|E2RC35 - symbol:DDX10 "Uncharacterized protein"... 1303 6.2e-133 1
UNIPROTKB|A4RGU2 - symbol:DBP4 "ATP-dependent RNA helicas... 1205 2.4e-130 3
CGD|CAL0004182 - symbol:HCA4 species:5476 "Candida albica... 1177 1.9e-126 3
WB|WBGene00021277 - symbol:Y23H5B.6 species:6239 "Caenorh... 1230 3.4e-125 1
SGD|S000003570 - symbol:HCA4 "DEAD box RNA helicase" spec... 1176 4.5e-124 2
FB|FBgn0030855 - symbol:CG5800 species:7227 "Drosophila m... 1071 9.0e-111 2
UNIPROTKB|F1MSX0 - symbol:F1MSX0 "Uncharacterized protein... 952 9.7e-96 1
UNIPROTKB|F1N533 - symbol:DDX18 "Uncharacterized protein"... 952 9.7e-96 1
UNIPROTKB|F1RY13 - symbol:DDX18 "Uncharacterized protein"... 946 4.2e-95 1
UNIPROTKB|I3L7B7 - symbol:DDX18 "Uncharacterized protein"... 946 4.2e-95 1
UNIPROTKB|I3L840 - symbol:DDX18 "Uncharacterized protein"... 946 4.2e-95 1
UNIPROTKB|E2RFA3 - symbol:DDX18 "Uncharacterized protein"... 937 3.8e-94 1
UNIPROTKB|F1NEQ3 - symbol:DDX18 "Uncharacterized protein"... 930 2.1e-93 1
UNIPROTKB|Q9NVP1 - symbol:DDX18 "ATP-dependent RNA helica... 930 2.1e-93 1
MGI|MGI:1914192 - symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) bo... 927 4.3e-93 1
UNIPROTKB|D4A824 - symbol:Ddx18 "Protein Ddx18" species:1... 924 9.0e-93 1
RGD|1549712 - symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box po... 922 1.5e-92 1
ZFIN|ZDB-GENE-030131-9685 - symbol:ddx18 "DEAD (Asp-Glu-A... 916 6.3e-92 1
POMBASE|SPAC1F7.02c - symbol:has1 "ATP-dependent RNA heli... 909 3.5e-91 1
ASPGD|ASPL0000044206 - symbol:AN1949 species:162425 "Emer... 904 1.2e-90 1
FB|FBgn0025140 - symbol:pit "pitchoune" species:7227 "Dro... 904 1.2e-90 1
DICTYBASE|DDB_G0282741 - symbol:ddx18 "DEAD/DEAH box heli... 890 3.6e-89 1
CGD|CAL0003050 - symbol:HAS1 species:5476 "Candida albica... 877 8.6e-88 1
UNIPROTKB|Q5AK59 - symbol:HAS1 "ATP-dependent RNA helicas... 877 8.6e-88 1
SGD|S000004903 - symbol:HAS1 "ATP-dependent RNA helicase"... 876 1.1e-87 1
TAIR|locus:2152099 - symbol:AT5G65900 species:3702 "Arabi... 838 1.2e-85 2
TAIR|locus:2086909 - symbol:AT3G18600 species:3702 "Arabi... 854 2.4e-85 1
GENEDB_PFALCIPARUM|PFF1500c - symbol:PFF1500c "DEAD/DEAH ... 851 4.9e-85 1
UNIPROTKB|C6KTE4 - symbol:PFF1500c "DEAD/DEAH box ATP-dep... 851 4.9e-85 1
WB|WBGene00015232 - symbol:B0511.6 species:6239 "Caenorha... 833 3.9e-83 1
UNIPROTKB|Q8NHQ9 - symbol:DDX55 "ATP-dependent RNA helica... 733 4.1e-77 2
UNIPROTKB|F1RFL5 - symbol:DDX55 "Uncharacterized protein"... 716 1.4e-74 2
UNIPROTKB|F1MW45 - symbol:DDX55 "ATP-dependent RNA helica... 717 2.3e-74 2
UNIPROTKB|Q2NL08 - symbol:DDX55 "ATP-dependent RNA helica... 717 2.3e-74 2
UNIPROTKB|F1NJA0 - symbol:DDX55 "ATP-dependent RNA helica... 738 4.6e-73 1
UNIPROTKB|Q5ZLN8 - symbol:DDX55 "ATP-dependent RNA helica... 733 1.6e-72 1
MGI|MGI:1915098 - symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) bo... 721 2.9e-71 1
RGD|2324094 - symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box po... 719 4.8e-71 1
UNIPROTKB|F1P8J6 - symbol:DDX55 "Uncharacterized protein"... 706 1.1e-69 1
UNIPROTKB|F1SV16 - symbol:F1SV16 "Uncharacterized protein... 698 8.0e-69 1
UNIPROTKB|F6XWM4 - symbol:DDX55 "Uncharacterized protein"... 657 1.1e-68 2
TAIR|locus:2825324 - symbol:AT1G71370 species:3702 "Arabi... 663 2.6e-67 2
FB|FBgn0037561 - symbol:CG9630 species:7227 "Drosophila m... 660 8.7e-67 2
UNIPROTKB|E2R316 - symbol:DDX55 "Uncharacterized protein"... 676 1.7e-66 1
DICTYBASE|DDB_G0291588 - symbol:ddx55 "DEAD/DEAH box heli... 488 3.9e-66 3
ZFIN|ZDB-GENE-021212-1 - symbol:ddx55 "DEAD (Asp-Glu-Ala-... 666 2.0e-65 1
UNIPROTKB|F5H5U2 - symbol:DDX55 "ATP-dependent RNA helica... 526 1.3e-63 2
TAIR|locus:2159527 - symbol:STRS2 "STRESS RESPONSE SUPPRE... 640 1.1e-62 1
TAIR|locus:2153564 - symbol:AT5G05450 species:3702 "Arabi... 634 4.8e-62 1
TAIR|locus:2159517 - symbol:PDE340 "PIGMENT DEFECTIVE 340... 617 3.1e-60 1
CGD|CAL0000864 - symbol:DRS1 species:5476 "Candida albica... 579 3.3e-59 2
UNIPROTKB|Q5ACK7 - symbol:DRS1 "ATP-dependent RNA helicas... 579 3.3e-59 2
WB|WBGene00012059 - symbol:T26G10.1 species:6239 "Caenorh... 596 5.1e-58 1
ZFIN|ZDB-GENE-050522-359 - symbol:zgc:112350 "zgc:112350"... 590 2.2e-57 1
POMBASE|SPBC24C6.02 - symbol:SPBC24C6.02 "ATP-dependent R... 564 2.6e-57 2
UNIPROTKB|Q96GQ7 - symbol:DDX27 "Probable ATP-dependent R... 556 4.7e-56 2
MGI|MGI:2385884 - symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) bo... 552 4.8e-56 2
DICTYBASE|DDB_G0280147 - symbol:ddx47 "DEAD/DEAH box heli... 571 2.3e-55 1
TAIR|locus:2032910 - symbol:RH36 "RNA helicase 36" specie... 534 8.8e-55 2
UNIPROTKB|E2RN03 - symbol:DDX47 "Uncharacterized protein"... 562 2.1e-54 1
CGD|CAL0000056 - symbol:orf19.7546 species:5476 "Candida ... 561 2.6e-54 1
UNIPROTKB|Q29S22 - symbol:DDX47 "Probable ATP-dependent R... 561 2.6e-54 1
MGI|MGI:1915005 - symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) bo... 561 2.6e-54 1
UNIPROTKB|G3V727 - symbol:Ddx47 "Protein Ddx47" species:1... 561 2.6e-54 1
UNIPROTKB|F1NQV5 - symbol:DDX27 "Uncharacterized protein"... 560 3.4e-54 1
UNIPROTKB|F1Q073 - symbol:DDX27 "Uncharacterized protein"... 560 3.4e-54 1
UNIPROTKB|J9P9C6 - symbol:DDX27 "Uncharacterized protein"... 560 3.4e-54 1
WB|WBGene00013983 - symbol:ZK512.2 species:6239 "Caenorha... 560 3.4e-54 1
UNIPROTKB|A1A4H6 - symbol:DDX27 "Probable ATP-dependent R... 558 5.5e-54 1
UNIPROTKB|Q9H0S4 - symbol:DDX47 "Probable ATP-dependent R... 558 5.5e-54 1
DICTYBASE|DDB_G0281711 - symbol:ddx27 "DEAD/DEAH box heli... 526 9.8e-54 2
ZFIN|ZDB-GENE-031001-8 - symbol:ddx27 "DEAD (Asp-Glu-Ala-... 555 1.1e-53 1
UNIPROTKB|Q5ZLB0 - symbol:DDX47 "Uncharacterized protein"... 553 1.9e-53 1
UNIPROTKB|A0R8U6 - symbol:cshA "DEAD-box ATP-dependent RN... 531 2.0e-53 2
UNIPROTKB|Q63GX5 - symbol:cshA "DEAD-box ATP-dependent RN... 531 2.0e-53 2
UNIPROTKB|Q6HPE6 - symbol:cshA "DEAD-box ATP-dependent RN... 531 2.0e-53 2
UNIPROTKB|Q81IT9 - symbol:cshA "DEAD-box ATP-dependent RN... 531 2.0e-53 2
UNIPROTKB|Q81VG0 - symbol:cshA "DEAD-box ATP-dependent RN... 531 2.0e-53 2
TIGR_CMR|BA_0247 - symbol:BA_0247 "ATP-dependent RNA heli... 531 2.0e-53 2
UNIPROTKB|Q73EU1 - symbol:cshA "DEAD-box ATP-dependent RN... 531 2.0e-53 2
UNIPROTKB|E1C187 - symbol:DDX27 "Uncharacterized protein"... 551 3.0e-53 1
TAIR|locus:2173517 - symbol:AT5G60990 species:3702 "Arabi... 531 3.3e-53 2
UNIPROTKB|A4QYM6 - symbol:DRS1 "ATP-dependent RNA helicas... 550 5.1e-53 1
UNIPROTKB|I3L976 - symbol:DDX47 "Uncharacterized protein"... 528 6.9e-53 2
TAIR|locus:2054688 - symbol:AT2G07750 species:3702 "Arabi... 551 8.9e-53 1
POMBASE|SPBC17D1.06 - symbol:dbp3 "ATP-dependent RNA heli... 545 1.3e-52 1
WB|WBGene00019219 - symbol:H20J04.4 species:6239 "Caenorh... 516 2.3e-52 2
TAIR|locus:2130918 - symbol:AT4G16630 species:3702 "Arabi... 526 2.7e-52 2
WARNING: Descriptions of 798 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2160225 [details] [associations]
symbol:AT5G54910 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AB005232 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
IPI:IPI00527032 RefSeq:NP_200302.1 UniGene:At.29471
ProteinModelPortal:Q9FFT9 SMR:Q9FFT9 STRING:Q9FFT9 PaxDb:Q9FFT9
PRIDE:Q9FFT9 EnsemblPlants:AT5G54910.1 GeneID:835582
KEGG:ath:AT5G54910 GeneFarm:988 TAIR:At5g54910 InParanoid:Q9FFT9
OMA:PEDGVGC PhylomeDB:Q9FFT9 ProtClustDB:CLSN2686959
Genevestigator:Q9FFT9 GermOnline:AT5G54910 Uniprot:Q9FFT9
Length = 739
Score = 2103 (745.4 bits), Expect = 1.0e-217, P = 1.0e-217
Identities = 417/652 (63%), Positives = 514/652 (78%)
Query: 1 MKKSKRKPNRKAVRSMEIEEIELLNSWIDSQKPESGTNPLSFPPLGKKEPIGRIGEDS-- 58
+K K K RK +R E+EEI LL WI+SQKP+SG NPLS PL K IG+ ED
Sbjct: 2 VKIKKTKGMRKQIRLNEVEEINLLKQWIESQKPDSGFNPLSLRPLPKDSKIGK-SEDGKN 60
Query: 59 ---FSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSG 115
FS+Y G +F QLPIS KTK GLKDA +V MTD+Q A++PH+LCGRDILGAA+TGSG
Sbjct: 61 GTVFSRYAGVRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSG 120
Query: 116 KTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGG 175
KTLAFVIP+LEKL++ERW PEDGVG IIISPTRELA Q F VL VGK H FSAGLLIGG
Sbjct: 121 KTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGG 180
Query: 176 RRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALN 235
R VD+EKE V+E+NILVC PGRLLQHMDETPNF+C QLQILILDEADR+LD FK L+
Sbjct: 181 REGVDVEKERVHEMNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLD 240
Query: 236 AIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPL 295
I+SQLPKHRQT LFSATQTK V+DLARLSL+DP+Y+SVH E+VTATP L QT MIVP+
Sbjct: 241 PIISQLPKHRQTLLFSATQTKKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVMIVPV 300
Query: 296 EQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAI 355
E+KLDMLWSFIK HLNS+ILVFL++ KQVK+V EAF KLRPGIPL L+G+M Q++RM +
Sbjct: 301 EKKLDMLWSFIKTHLNSRILVFLSTKKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRMGV 360
Query: 356 YAQFCEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVL 415
Y+QF E++SVLFCTDV +RGLDF+KAVDWVVQVDCPEDVASYIHRVGRTAR+ + G+S+L
Sbjct: 361 YSQFIERQSVLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSLL 420
Query: 416 FLTPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLR 475
FLTP+E KM+EKL+EAK+PI KAN ++LQ VS LLAALLVKYPD+Q AQ+AFITYLR
Sbjct: 421 FLTPSEEKMIEKLQEAKVPIKLIKANNQKLQEVSRLLAALLVKYPDLQGVAQRAFITYLR 480
Query: 476 SVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQK-KGKMVPVKPV---LDNAEKE 531
S+H ++DKE+FDV+KLSI+ FSASLGLPMTP+IRF N K K K V + ++NA++
Sbjct: 481 SIHKRRDKEIFDVSKLSIENFSASLGLPMTPRIRFTNLKTKKKGVYESSIAMEIENAQEY 540
Query: 532 DKLMISREKLLPDNFTEENVD-RDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINVH 590
+ ++ ++ LL ++ EE+ + E K +E K + E ++ RV KNKKLKIN+H
Sbjct: 541 EAPLVVKKDLLGEDLEEEDFALKPRKEGKVVEKSTKEE--EVLIPGNRVLKNKKLKINLH 598
Query: 591 RPLGTRLVFDEECNTVPPLAMLADTKNANVSLDQDQKTEYYKKIREELKRAD 642
RP G+R+V DEE N++ PLA +A V+LD+++ +YYKK+ E+++AD
Sbjct: 599 RPFGSRVVLDEEGNSLAPLASVAAEAGTEVALDEERMNDYYKKVGAEMRKAD 650
>DICTYBASE|DDB_G0284017 [details] [associations]
symbol:ddx10 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0284017 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000153_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AAFI02000059 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HSSP:P26196 RefSeq:XP_638786.1 ProteinModelPortal:Q54Q94
STRING:Q54Q94 PRIDE:Q54Q94 EnsemblProtists:DDB0234197
GeneID:8624375 KEGG:ddi:DDB_G0284017 OMA:AMNILIA Uniprot:Q54Q94
Length = 878
Score = 1413 (502.5 bits), Expect = 1.6e-149, Sum P(3) = 1.6e-149
Identities = 286/602 (47%), Positives = 410/602 (68%)
Query: 3 KSKRKPNRKAVRSMEIEEIELLNSWIDSQKPESGTNPL---SFPPLGKKEPIGRIGEDSF 59
K K+ +K ++++ EI+ + + + P+ GTNPL S +
Sbjct: 70 KLKKIELQKKPLTLKLNEIKSIEQRLIDEAPQRGTNPLANISSTTATTTTTTATKNDKEK 129
Query: 60 SK-----YVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGS 114
K Y +T F LPIS+ T L ++ F+K+TDIQRASLPH+LCGRDILGAAKTGS
Sbjct: 130 EKEYKIDYPSATDFKDLPISQLTLKALTESKFLKLTDIQRASLPHTLCGRDILGAAKTGS 189
Query: 115 GKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIG 174
GKTL+F++P+LE L++ RWG +DG+G+I++SPTRELA Q+FDVLKAVGK+H FSAGL+IG
Sbjct: 190 GKTLSFILPILETLWRNRWGRDDGIGAIVLSPTRELAIQIFDVLKAVGKYHTFSAGLIIG 249
Query: 175 GRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKAL 234
GR +V EK+ +N +NIL+ TPGRLLQHMDET FDCS L+IL+LDEADRILD+GF K L
Sbjct: 250 GR-NVQQEKDKINAMNILIATPGRLLQHMDETYGFDCSNLKILVLDEADRILDLGFSKCL 308
Query: 235 NAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP 294
N+IV LP+ RQT LFSATQTKS++DLARLSL++P+Y+SV+E+ +T TP L QT ++P
Sbjct: 309 NSIVENLPRERQTLLFSATQTKSIRDLARLSLQEPEYISVYEKDITTTPQNLTQTLCVIP 368
Query: 295 LEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMA 354
LE KL+ML+SFIK HL SKI+VF SCKQV++ E FK L PG L L+G+MKQ R+
Sbjct: 369 LEMKLNMLFSFIKTHLTSKIIVFFASCKQVRFAHETFKLLNPGTTLFPLHGKMKQWTRLE 428
Query: 355 IYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRS 413
++ FC+K++ LF TD+A+RGLDF AV+WV+QVDCP+D+ +YIHRVGRTAR ++ G+S
Sbjct: 429 VFEDFCKKKAGTLFATDIAARGLDF-PAVEWVIQVDCPDDIETYIHRVGRTARNDAPGQS 487
Query: 414 VLFLTPTEMK-MLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFIT 472
+ L P+E M+ + + K+ + N ++L + L++ L + D+++ AQK+F++
Sbjct: 488 ITILLPSEKDGMVNLMEKQKMKFEILEPNPEKLVSIDSKLSSFLSEKTDLKYLAQKSFVS 547
Query: 473 YLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNAEKE- 531
YLRSV+ Q +KE+F + +L+I+EFS SLGL TP I+F + V+ N +K+
Sbjct: 548 YLRSVYRQSNKEIFKIQELNINEFSKSLGLLGTPNIQF-GKASADSKNKSFVVSNIQKQL 606
Query: 532 -DKLMISREKLLPDNFTEENVDRDILETKDIED-EGKADLLEDVMRATRVKKNKKLKINV 589
DK + + + +++ +R+ + D ED E +D +D + ++ K N+
Sbjct: 607 KDKKSKGEKDIDSSDDDDDDEERNKIGNSDDEDSEDDSDFQDDSDDDNKKVTKQQPKTNI 666
Query: 590 HR 591
+
Sbjct: 667 EK 668
Score = 56 (24.8 bits), Expect = 2.9e-148, Sum P(2) = 2.9e-148
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 695 KKAKIYFDSDS-DNDNDERKQNKDDNGPNIDS 725
KK+K D DS D+D+D+ ++NK N + DS
Sbjct: 609 KKSKGEKDIDSSDDDDDDEERNKIGNSDDEDS 640
Score = 47 (21.6 bits), Expect = 2.5e-147, Sum P(2) = 2.5e-147
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 702 DSDSDNDNDERKQNKDDN 719
D DS++D+D + + DDN
Sbjct: 637 DEDSEDDSDFQDDSDDDN 654
Score = 44 (20.5 bits), Expect = 1.6e-149, Sum P(3) = 1.6e-149
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 600 DEECNTVPPLAMLADTKNANVSLDQDQKTEYYKKIREELKRAD 642
++E N + L ++ +V D T Y +K++ E+++ D
Sbjct: 721 NKEKNFINDPTKLKFQESTSVPKDGKLPTSYIEKVKSEVEKGD 763
Score = 44 (20.5 bits), Expect = 5.3e-147, Sum P(2) = 5.3e-147
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 702 DSD--SDNDNDERKQNKDDNGPNIDSI 726
DSD D+D+D +K K NI+ +
Sbjct: 643 DSDFQDDSDDDNKKVTKQQPKTNIEKL 669
Score = 39 (18.8 bits), Expect = 1.6e-149, Sum P(3) = 1.6e-149
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 701 FDSDSDNDNDERKQNKDDNGP 721
++SD D+D+DE ++++ P
Sbjct: 836 YNSD-DDDDDEESESEEQPKP 855
Score = 39 (18.8 bits), Expect = 1.6e-149, Sum P(3) = 1.6e-149
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 702 DSDSDNDNDE---RKQNKDDNGPNIDSIS 727
DSD ++++D+ ++ N DD+ + +S S
Sbjct: 821 DSDDESNDDDVWGQEYNSDDDDDDEESES 849
Score = 38 (18.4 bits), Expect = 7.0e-149, Sum P(3) = 7.0e-149
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 612 LADTKNANVSLDQDQKTEYYKKIREE 637
L D KNANV + QK ++ E+
Sbjct: 669 LFDRKNANVMSETYQKLRTKEEDEED 694
Score = 37 (18.1 bits), Expect = 2.7e-149, Sum P(3) = 2.7e-149
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 700 YFDSDSDNDNDERKQNKDDNGPNIDSI 726
YF + D E +N D+ N D +
Sbjct: 805 YFVPPGEKDPYENGENDSDDESNDDDV 831
>POMBASE|SPAC1093.05 [details] [associations]
symbol:SPAC1093.05 "ATP-dependent RNA helicase Hca4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1093.05 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 PIR:T50068 RefSeq:NP_594652.1
ProteinModelPortal:Q9UTP9 SMR:Q9UTP9 STRING:Q9UTP9
EnsemblFungi:SPAC1093.05.1 GeneID:2541630 KEGG:spo:SPAC1093.05
NextBio:20802723 Uniprot:Q9UTP9
Length = 735
Score = 1285 (457.4 bits), Expect = 3.5e-139, Sum P(3) = 3.5e-139
Identities = 246/444 (55%), Positives = 334/444 (75%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F +LP+++ TKS LK+A F+ +T+IQ+ +P +L GRDILGAAKTGSGKTLAF++P++E
Sbjct: 41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
LY+++W DG+G+++ISPTRELA Q F+ L +G+ H+FSAGL+IGG + EKE ++
Sbjct: 101 LYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKE-EKERLS 159
Query: 188 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQT 247
+NILVCTPGRLLQH+D+ NFD S LQ+LILDEADRILD+GF+ L+AIVS LP HRQT
Sbjct: 160 RMNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQT 219
Query: 248 FLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIK 307
LFSATQTKSV+DLARLSL++P ++SVHE ++TP+ L Q + VPL +KLD+L+ FI+
Sbjct: 220 MLFSATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKLDILFGFIR 279
Query: 308 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSV-L 366
HL K +VFL+SCKQV++V+E F+++RPGI L+ L+G+ KQ R + A+F R V L
Sbjct: 280 THLKFKTIVFLSSCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVL 339
Query: 367 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLE 426
FCTD+ +RGLDF AVDWV+Q+D PEDV +YIHRVGRTARYN G ++L L P+E L+
Sbjct: 340 FCTDIVARGLDF-PAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGNALLLLLPSEEAFLK 398
Query: 427 KLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVF 486
+L KI + + + L L K D+++ QKAFI+YLRS+++QKDK+VF
Sbjct: 399 RLESKKIAVERINVKDGKKTSIRNQLQNLCFKDNDIKYIGQKAFISYLRSIYLQKDKDVF 458
Query: 487 DVTKLSIDEFSASLGLPMTPKIRF 510
+ KL ++ F+ SLGLP TPKI F
Sbjct: 459 QLDKLPVEAFADSLGLPGTPKITF 482
Score = 69 (29.3 bits), Expect = 3.5e-139, Sum P(3) = 3.5e-139
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 529 EKEDKLMISREKLLPDNFTEENVDRDILETK----DIEDEGKADLLEDVMRATRVKKNKK 584
+ +D L R++L+ N E+ D D L+ K D+ +E + R ++ +KK
Sbjct: 528 KNQDVLAAHRQRLVEVNSDED--DGDFLQVKRVDHDLPEETGERFNANSKRKEKMASSKK 585
Query: 585 LKINVHRPLGTRLVFDEECNTVPPLAM 611
+ ++ ++ FD+E N +P AM
Sbjct: 586 AMLK-YKKSADKVYFDDEGNAIPFYAM 611
Score = 44 (20.5 bits), Expect = 3.5e-139, Sum P(3) = 3.5e-139
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 2 KKSKRKPNRKAVRSMEIEEIELLNSWIDS 30
+ + + R+ R E EEIE LNS I++
Sbjct: 5 RTGRSREAREKKRKEEEEEIEELNSQIEA 33
>ASPGD|ASPL0000061778 [details] [associations]
symbol:AN0589 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 RefSeq:XP_658193.1
ProteinModelPortal:Q5BFU1 SMR:Q5BFU1 STRING:Q5BFU1
EnsemblFungi:CADANIAT00002085 GeneID:2876356 KEGG:ani:AN0589.2
HOGENOM:HOG000268801 OMA:MFERKNQ OrthoDB:EOG4R53B0 Uniprot:Q5BFU1
Length = 812
Score = 1308 (465.5 bits), Expect = 1.2e-138, Sum P(2) = 1.2e-138
Identities = 244/446 (54%), Positives = 345/446 (77%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F LPIS+ T SGL + F +TDIQ ++ H+L GRD+LGAAKTGSGKTLAF++P+LE
Sbjct: 50 FSDLPISEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPILEN 109
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
LY+++W DG+G++IISPTRELA Q+F+VL+ +G++H FSAGL+IGG+ + E+E +
Sbjct: 110 LYRKQWSDHDGLGALIISPTRELAIQIFEVLRKIGRYHTFSAGLVIGGK-SLKEEQERLG 168
Query: 188 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQT 247
+NILVCTPGR+LQH+D+T F+ LQ+L+LDEADRI+D+GF+K ++AI+ LP RQT
Sbjct: 169 RMNILVCTPGRMLQHLDQTAFFETYNLQMLVLDEADRIMDMGFQKTVDAIIGHLPPERQT 228
Query: 248 FLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIK 307
LFSATQTK V DLARLSL+DP+Y++VHE + +ATP++LQQ ++ PL QKLD LWSFI+
Sbjct: 229 LLFSATQTKKVSDLARLSLQDPEYVAVHEAASSATPSKLQQHYVVTPLPQKLDTLWSFIR 288
Query: 308 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVL 366
++L SK +VF++S KQV++V+E+F+ ++PGIPL+ L+GR KQ R+ I +F + + +VL
Sbjct: 289 SNLKSKTIVFMSSGKQVRFVYESFRHMQPGIPLLHLHGRQKQGGRLDITTRFSQAQHAVL 348
Query: 367 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK-ML 425
F TDVA+RGLDF AVDWV+Q+DCPED +YIHRVGRTARY GR+VLFL P+E K ML
Sbjct: 349 FSTDVAARGLDF-PAVDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEEKGML 407
Query: 426 EKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEV 485
+L + ++ + + Q + L + K P++++ QKAFI+Y++SV+IQKDKE
Sbjct: 408 RRLEQKRVTVERINVRANKQQSIKNQLQNMCFKDPELKYLGQKAFISYVKSVYIQKDKET 467
Query: 486 FDVTKLSIDEFSASLGLPMTPKIRFL 511
F++ +L +D+F+ASLGLP P+I+F+
Sbjct: 468 FNLKELKLDDFAASLGLPGAPRIKFI 493
Score = 70 (29.7 bits), Expect = 1.2e-138, Sum P(2) = 1.2e-138
Identities = 28/115 (24%), Positives = 53/115 (46%)
Query: 532 DKLMISREKLLPDNFTEENVDRDILETKD---IEDEGKADLLEDVMRATRVKKNKKLKIN 588
D + + + D+ ++ D E KD ++ K L+ D R ++ K+KK K+
Sbjct: 589 DDALHAEDSSASDSDASDSEAEDHTEKKDPKVVKISDKDTLVIDSKRREKLLKSKK-KLL 647
Query: 589 VHRPLGTRLVFDEECNTVPPLAMLADTKNANVSLD-QDQKTEYYKKIREELKRAD 642
+ GT+LV+D+E N L + D + D ++Q+ + + +RAD
Sbjct: 648 KFKGKGTKLVYDDEGNA-HELYEMEDEEAFKARGDAKEQQARFLAEEAARTQRAD 701
Score = 42 (19.8 bits), Expect = 1.1e-135, Sum P(2) = 1.1e-135
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 690 ERGRRKKAKIYF---DSDSDNDNDERKQNKD 717
ER +A Y D +SD + ++KQ K+
Sbjct: 500 ERKNASRATAYLTSGDEESDEEGGKKKQPKE 530
Score = 39 (18.8 bits), Expect = 2.2e-135, Sum P(2) = 2.2e-135
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 703 SDSDNDNDERKQNKDDNGPNIDSIS 727
SDSD + E + + + P + IS
Sbjct: 600 SDSDASDSEAEDHTEKKDPKVVKIS 624
Score = 38 (18.4 bits), Expect = 2.8e-135, Sum P(2) = 2.8e-135
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 524 VLDNAEKEDKLMISREKLL 542
V+D+ +E KL+ S++KLL
Sbjct: 630 VIDSKRRE-KLLKSKKKLL 647
>UNIPROTKB|E9PIF2 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HGNC:HGNC:2735 ChiTaRS:DDX10 EMBL:AP002453
EMBL:AP003027 EMBL:AP003387 IPI:IPI00982941
ProteinModelPortal:E9PIF2 SMR:E9PIF2 Ensembl:ENST00000526794
UCSC:uc001pkl.1 ArrayExpress:E9PIF2 Bgee:E9PIF2 Uniprot:E9PIF2
Length = 835
Score = 1323 (470.8 bits), Expect = 1.3e-137, Sum P(2) = 1.3e-137
Identities = 259/505 (51%), Positives = 372/505 (73%)
Query: 47 KKEPIGRIGEDSFSKYVGS-TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRD 105
++E I R+ ++ V TRF P+SKKT GL++A + +T+IQ+ ++ +L G+D
Sbjct: 49 ERESISRLMQNYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKD 108
Query: 106 ILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH 165
+LGAAKTGSGKTLAF++PVLE LY+ +W DG+G +IISPTRELA Q F+VL+ VGK+H
Sbjct: 109 VLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNH 168
Query: 166 NFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRI 225
+FSAGL+IGG+ D+ E E +N +NILVCTPGRLLQHMDET +F + LQ+L+LDEADRI
Sbjct: 169 DFSAGLIIGGK-DLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRI 227
Query: 226 LDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNR 285
LD+GF +NA++ LPK RQT LFSATQTKSV+DLARLSLK+P+Y+ VHE++ +TP
Sbjct: 228 LDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPAT 287
Query: 286 LQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG 345
L+Q ++ L+QK+ +L+SF+++HL K +VF +SCK+V+Y++ F +LRPG+ ++ L+G
Sbjct: 288 LEQNYIVCELQQKISVLYSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHG 347
Query: 346 RMKQDRRMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRT 404
R +Q RRM +Y +F KR+ VLF TD+A+RGLDF AV+WV+Q DCPED +YIHR GRT
Sbjct: 348 RQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDF-PAVNWVLQFDCPEDANTYIHRAGRT 406
Query: 405 ARYNSGGRSVLFLTPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQH 464
ARY G ++L L P+E M+++L + K+P+ K N ++L V L ++L + D++
Sbjct: 407 ARYKEDGEALLILLPSEKAMVQQLLQKKVPVKEIKINPEKLIDVQKKLESILAQDQDLKE 466
Query: 465 RAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPV 524
RAQ+ F++Y+RSV++ KDKEVFDV+KL I E++ SLGL + P++RFL QK K P K +
Sbjct: 467 RAQRCFVSYVRSVYLMKDKEVFDVSKLPIPEYALSLGLAVAPRVRFL-QKMQKQ-PTKEL 524
Query: 525 LDNAEKEDKLMISREKLLPDNFTEE 549
+ + + DK++ R L ++ EE
Sbjct: 525 VRS--QADKVIEPRAPSLTNDEVEE 547
Score = 45 (20.9 bits), Expect = 1.3e-137, Sum P(2) = 1.3e-137
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 689 MERGRRKKAKIYFDSDSDNDNDERKQNKDD 718
+++G ++ D+D N+E+++ +DD
Sbjct: 559 LQKGGKRLEGTEHRQDNDTGNEEQEEEEDD 588
>UNIPROTKB|Q13206 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CH471065
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268801 CTD:1662 HOVERGEN:HBG102756 OrthoDB:EOG4BK536
EMBL:U28042 EMBL:AB040537 EMBL:AK315216 EMBL:BC091521 EMBL:BC093654
EMBL:BC093656 IPI:IPI00297900 RefSeq:NP_004389.2 UniGene:Hs.591931
PDB:2PL3 PDBsum:2PL3 ProteinModelPortal:Q13206 SMR:Q13206
IntAct:Q13206 STRING:Q13206 PhosphoSite:Q13206 DMDM:76803554
SWISS-2DPAGE:Q13206 PaxDb:Q13206 PeptideAtlas:Q13206 PRIDE:Q13206
Ensembl:ENST00000322536 GeneID:1662 KEGG:hsa:1662 UCSC:uc001pkm.3
GeneCards:GC11P108569 HGNC:HGNC:2735 HPA:HPA004691 MIM:601235
neXtProt:NX_Q13206 PharmGKB:PA27200 InParanoid:Q13206 OMA:ADKVIEP
ChiTaRS:DDX10 EvolutionaryTrace:Q13206 GenomeRNAi:1662 NextBio:6838
ArrayExpress:Q13206 Bgee:Q13206 CleanEx:HS_DDX10
Genevestigator:Q13206 GermOnline:ENSG00000178105 Uniprot:Q13206
Length = 875
Score = 1323 (470.8 bits), Expect = 1.3e-137, Sum P(2) = 1.3e-137
Identities = 259/505 (51%), Positives = 372/505 (73%)
Query: 47 KKEPIGRIGEDSFSKYVGS-TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRD 105
++E I R+ ++ V TRF P+SKKT GL++A + +T+IQ+ ++ +L G+D
Sbjct: 49 ERESISRLMQNYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKD 108
Query: 106 ILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH 165
+LGAAKTGSGKTLAF++PVLE LY+ +W DG+G +IISPTRELA Q F+VL+ VGK+H
Sbjct: 109 VLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNH 168
Query: 166 NFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRI 225
+FSAGL+IGG+ D+ E E +N +NILVCTPGRLLQHMDET +F + LQ+L+LDEADRI
Sbjct: 169 DFSAGLIIGGK-DLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRI 227
Query: 226 LDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNR 285
LD+GF +NA++ LPK RQT LFSATQTKSV+DLARLSLK+P+Y+ VHE++ +TP
Sbjct: 228 LDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPAT 287
Query: 286 LQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG 345
L+Q ++ L+QK+ +L+SF+++HL K +VF +SCK+V+Y++ F +LRPG+ ++ L+G
Sbjct: 288 LEQNYIVCELQQKISVLYSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHG 347
Query: 346 RMKQDRRMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRT 404
R +Q RRM +Y +F KR+ VLF TD+A+RGLDF AV+WV+Q DCPED +YIHR GRT
Sbjct: 348 RQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDF-PAVNWVLQFDCPEDANTYIHRAGRT 406
Query: 405 ARYNSGGRSVLFLTPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQH 464
ARY G ++L L P+E M+++L + K+P+ K N ++L V L ++L + D++
Sbjct: 407 ARYKEDGEALLILLPSEKAMVQQLLQKKVPVKEIKINPEKLIDVQKKLESILAQDQDLKE 466
Query: 465 RAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPV 524
RAQ+ F++Y+RSV++ KDKEVFDV+KL I E++ SLGL + P++RFL QK K P K +
Sbjct: 467 RAQRCFVSYVRSVYLMKDKEVFDVSKLPIPEYALSLGLAVAPRVRFL-QKMQKQ-PTKEL 524
Query: 525 LDNAEKEDKLMISREKLLPDNFTEE 549
+ + + DK++ R L ++ EE
Sbjct: 525 VRS--QADKVIEPRAPSLTNDEVEE 547
Score = 45 (20.9 bits), Expect = 1.3e-137, Sum P(2) = 1.3e-137
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 689 MERGRRKKAKIYFDSDSDNDNDERKQNKDD 718
+++G ++ D+D N+E+++ +DD
Sbjct: 559 LQKGGKRLEGTEHRQDNDTGNEEQEEEEDD 588
>UNIPROTKB|F1P0I3 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074980 IPI:IPI00595697
OMA:ADKVIEP EMBL:AADN02005060 Ensembl:ENSGALT00000027709
Uniprot:F1P0I3
Length = 875
Score = 1296 (461.3 bits), Expect = 6.6e-136, Sum P(2) = 6.6e-136
Identities = 248/468 (52%), Positives = 349/468 (74%)
Query: 67 RFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLE 126
RF P+SKKT GL++A + +T+IQR ++ +L G+D+LGAAKTGSGKTLAF++P LE
Sbjct: 74 RFSDFPLSKKTLKGLQEAQYRMVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPALE 133
Query: 127 KLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV 186
LY+ +W DG+G +IISPTRELA Q F VL+ VGK+H+FSAGL+IGG+ D+ E E +
Sbjct: 134 LLYRLQWTSADGLGVLIISPTRELAFQTFKVLRKVGKNHDFSAGLIIGGK-DLKEESERI 192
Query: 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246
+ +N+L+CTPGRLLQHMDET F S LQ+LILDEADRILD+GF +NAI+ LPK RQ
Sbjct: 193 HHINMLICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMGFADTMNAIIENLPKKRQ 252
Query: 247 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFI 306
T LFSATQTKSV+DLARLSLKDP+Y+ VHE++ +TP L Q ++ L+ K+++L+SF+
Sbjct: 253 TLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKFSTPATLDQNYIVCELQHKINVLYSFL 312
Query: 307 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS-V 365
++HL K +VF SCK+V+Y+F F KL+PG+P++ L+G+ +Q +RM +Y F K++ V
Sbjct: 313 RSHLKKKSIVFFASCKEVQYLFRVFCKLQPGLPVLALHGKQQQMKRMEVYTCFVRKKAAV 372
Query: 366 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK-M 424
LF TD+A+RGLDF AV+WV+Q DCPED +YIHRVGRTARY GG ++L L P+E K M
Sbjct: 373 LFATDIAARGLDF-PAVNWVIQFDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEEKGM 431
Query: 425 LEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKE 484
+E+L + K+P++ K N +++ + + A L + +++ +AQ+ F++YLRSV++ K+KE
Sbjct: 432 VEQLAQRKVPVNEIKINPEKITDIQKRMQAFLAQDQELKEKAQRCFVSYLRSVYLMKNKE 491
Query: 485 VFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNAEKED 532
VFDV KL + E++ SLGL M P++RFL QK K + VK + +D
Sbjct: 492 VFDVFKLPLAEYALSLGLAMAPRVRFL-QKVQKQLSVKETSERNPLKD 538
Score = 56 (24.8 bits), Expect = 6.6e-136, Sum P(2) = 6.6e-136
Identities = 29/117 (24%), Positives = 48/117 (41%)
Query: 526 DNAEKEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKL 585
D+ + D L + R D F E+ D L + + + K ++ A ++ K KK
Sbjct: 631 DDTKDLDLLTVKRR----DVFDLESKDSPALNASNSKMKKKTTKTQE---AKKILK-KKF 682
Query: 586 KINVHRPLGTRLVFDEECNTVPPLAMLADTKNANVSLDQDQKTEYYKKIREELKRAD 642
K+N TR+VF E+ V + + A + D K+RE L+ D
Sbjct: 683 KVN------TRIVFTEDGELVQQWPPVQKSGLAKADEEDDASGINLDKVREILREED 733
Score = 40 (19.1 bits), Expect = 3.2e-134, Sum P(2) = 3.2e-134
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 623 DQDQKTEYYKKIREE 637
D+ K EY KKI+E+
Sbjct: 733 DKFDKEEYRKKIKEK 747
>UNIPROTKB|Q5ZJF6 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
EMBL:AJ720478 IPI:IPI00595697 RefSeq:NP_001073193.1
UniGene:Gga.15096 HSSP:P26196 ProteinModelPortal:Q5ZJF6 SMR:Q5ZJF6
STRING:Q5ZJF6 GeneID:418965 KEGG:gga:418965 CTD:1662
HOVERGEN:HBG102756 InParanoid:Q5ZJF6 OrthoDB:EOG4BK536
NextBio:20822084 Uniprot:Q5ZJF6
Length = 875
Score = 1296 (461.3 bits), Expect = 6.6e-136, Sum P(2) = 6.6e-136
Identities = 248/468 (52%), Positives = 349/468 (74%)
Query: 67 RFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLE 126
RF P+SKKT GL++A + +T+IQR ++ +L G+D+LGAAKTGSGKTLAF++P LE
Sbjct: 74 RFSDFPLSKKTLKGLQEAQYRMVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPALE 133
Query: 127 KLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV 186
LY+ +W DG+G +IISPTRELA Q F VL+ VGK+H+FSAGL+IGG+ D+ E E +
Sbjct: 134 LLYRLQWTSADGLGVLIISPTRELAFQTFKVLRKVGKNHDFSAGLIIGGK-DLKEESERI 192
Query: 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246
+ +N+L+CTPGRLLQHMDET F S LQ+LILDEADRILD+GF +NAI+ LPK RQ
Sbjct: 193 HHINMLICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMGFADTMNAIIENLPKKRQ 252
Query: 247 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFI 306
T LFSATQTKSV+DLARLSLKDP+Y+ VHE++ +TP L Q ++ L+ K+++L+SF+
Sbjct: 253 TLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKFSTPATLDQNYIVCELQHKINVLYSFL 312
Query: 307 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS-V 365
++HL K +VF SCK+V+Y+F F KL+PG+P++ L+G+ +Q +RM +Y F K++ V
Sbjct: 313 RSHLKKKSIVFFASCKEVQYLFRVFCKLQPGLPVLALHGKQQQMKRMEVYTCFVRKKAAV 372
Query: 366 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK-M 424
LF TD+A+RGLDF AV+WV+Q DCPED +YIHRVGRTARY GG ++L L P+E K M
Sbjct: 373 LFATDIAARGLDF-PAVNWVIQFDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEEKGM 431
Query: 425 LEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKE 484
+E+L + K+P++ K N +++ + + A L + +++ +AQ+ F++YLRSV++ K+KE
Sbjct: 432 VEQLAQRKVPVNEIKINPEKITDIQKRMQAFLAQDQELKEKAQRCFVSYLRSVYLMKNKE 491
Query: 485 VFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNAEKED 532
VFDV KL + E++ SLGL M P++RFL QK K + VK + +D
Sbjct: 492 VFDVFKLPLAEYALSLGLAMAPRVRFL-QKVQKQLSVKETSERNPLKD 538
Score = 56 (24.8 bits), Expect = 6.6e-136, Sum P(2) = 6.6e-136
Identities = 29/117 (24%), Positives = 48/117 (41%)
Query: 526 DNAEKEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKL 585
D+ + D L + R D F E+ D L + + + K ++ A ++ K KK
Sbjct: 631 DDTKDLDLLTVKRR----DVFDLESKDSPALNASNSKMKKKTTKTQE---AKKILK-KKF 682
Query: 586 KINVHRPLGTRLVFDEECNTVPPLAMLADTKNANVSLDQDQKTEYYKKIREELKRAD 642
K+N TR+VF E+ V + + A + D K+RE L+ D
Sbjct: 683 KVN------TRIVFTEDGELVQQWPPVQKSGLAKADEEDDASGINLDKVREILREED 733
Score = 40 (19.1 bits), Expect = 3.2e-134, Sum P(2) = 3.2e-134
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 623 DQDQKTEYYKKIREE 637
D+ K EY KKI+E+
Sbjct: 733 DKFDKEEYRKKIKEK 747
>MGI|MGI:1924841 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1924841 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP ChiTaRS:DDX10 EMBL:BC049261
IPI:IPI00896604 RefSeq:NP_084212.2 UniGene:Mm.133560
ProteinModelPortal:Q80Y44 SMR:Q80Y44 STRING:Q80Y44
PhosphoSite:Q80Y44 PaxDb:Q80Y44 PRIDE:Q80Y44
Ensembl:ENSMUST00000065630 GeneID:77591 KEGG:mmu:77591
UCSC:uc009plz.2 InParanoid:Q80Y44 NextBio:347162 Bgee:Q80Y44
CleanEx:MM_DDX10 Genevestigator:Q80Y44
GermOnline:ENSMUSG00000053289 Uniprot:Q80Y44
Length = 875
Score = 1300 (462.7 bits), Expect = 1.7e-135, Sum P(2) = 1.7e-135
Identities = 262/507 (51%), Positives = 368/507 (72%)
Query: 47 KKEPIGRIGEDSFSKYVGS-TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRD 105
++E I R+ ++ V TRF P+SKKT GL++A + +T+IQ+ ++ +L G+D
Sbjct: 49 EREGISRLMQNYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKD 108
Query: 106 ILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH 165
+LGAAKTGSGKTLAF++PVLE LY+ +W DG+G +IISPTRELA Q F+VL+ VGK+H
Sbjct: 109 VLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNH 168
Query: 166 NFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRI 225
+FSAGL+IGG+ D+ E E +N +NILVCTPGRLLQHMDET F + LQ+L+LDEADRI
Sbjct: 169 DFSAGLIIGGK-DLKHEAERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRI 227
Query: 226 LDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNR 285
LD+GF +NAI+ LPK RQT LFSATQTKSV+DLARLSLKDP+Y+ VHE++ +TP
Sbjct: 228 LDMGFADTMNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPAT 287
Query: 286 LQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG 345
L+Q +I L QK+ +L+SF+++HL K +VF +SCK+V+Y++ F +LRPGI ++ L+G
Sbjct: 288 LEQNYIICELHQKISVLFSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHG 347
Query: 346 RMKQDRRMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRT 404
R +Q RRM +Y +F KR+ VLF TD+A+RGLDF AV+WV+Q DCPED +YIHR GRT
Sbjct: 348 RQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDF-PAVNWVLQFDCPEDANTYIHRAGRT 406
Query: 405 ARYNSGGRSVLFLTPTEMK-MLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQ 463
ARY G ++L L P+E + M+++L + K+P+ K N ++L V L + L + D++
Sbjct: 407 ARYKEDGEALLILLPSEEQGMVQQLLQKKVPVKEIKINPEKLIDVQKKLESFLAQDQDLK 466
Query: 464 HRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKP 523
RAQ+ F++Y+RSV++ KDKEVF+V+KL I E++ SLGL + P+IRFL QK K P
Sbjct: 467 ERAQRCFVSYIRSVYLMKDKEVFNVSKLPITEYALSLGLAVAPRIRFL-QKLEKQ-PSTE 524
Query: 524 VLDNAEKEDKLMISREKLLPDNFTEEN 550
++ N E + R LP++ +E+
Sbjct: 525 LVKNPVTE--AVPPRAPSLPNDEADES 549
Score = 48 (22.0 bits), Expect = 1.7e-135, Sum P(2) = 1.7e-135
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 549 ENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINVHRPL--GTRLVFDEE 602
E+ + + +TK ++ K + ED R + KK K PL G L DEE
Sbjct: 810 EDTNHKMSDTKKKQETRKRNNTEDDDVRPRSRHGKKAKWETVEPLDTGLSLAEDEE 865
>RGD|1308990 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1308990
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 CTD:1662 OrthoDB:EOG4BK536 OMA:ADKVIEP
IPI:IPI00869603 RefSeq:NP_001100290.1 UniGene:Rn.99481
Ensembl:ENSRNOT00000017683 GeneID:300710 KEGG:rno:300710
UCSC:RGD:1308990 NextBio:647348 Uniprot:D3ZBY5
Length = 874
Score = 1301 (463.0 bits), Expect = 9.5e-135, Sum P(2) = 9.5e-135
Identities = 260/488 (53%), Positives = 358/488 (73%)
Query: 47 KKEPIGRIGEDSFSKYVGS-TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRD 105
++E I R+ ++ V TRF P+SKKT GL++A + +T+IQ+ ++ +L G+D
Sbjct: 49 EREGISRLMQNYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKD 108
Query: 106 ILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH 165
+LGAAKTGSGKTLAF++PVLE LY+ +W DG+G +IISPTRELA Q F+VL+ VGK+H
Sbjct: 109 VLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNH 168
Query: 166 NFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRI 225
+FSAGL+IGG+ D+ E E +N +NILVCTPGRLLQHMDET F + LQ+L+LDEADRI
Sbjct: 169 DFSAGLIIGGK-DLKHEAERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRI 227
Query: 226 LDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNR 285
LD+GF +NAI+ LPK RQT LFSATQTKSV+DLARLSLKDP+Y+ VHE++ +TP
Sbjct: 228 LDMGFADTMNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPAT 287
Query: 286 LQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG 345
L+Q +I L QK+ +L+SF+++HL K +VF +SCK+V+Y++ F +LRPGI ++ L+G
Sbjct: 288 LEQNYIICELHQKISVLFSFLRSHLTKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHG 347
Query: 346 RMKQDRRMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRT 404
R +Q RRM +Y +F KR+ VLF TD+A+RGLDF AV+WV+Q DCPED +YIHR GRT
Sbjct: 348 RQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDF-PAVNWVLQFDCPEDANTYIHRAGRT 406
Query: 405 ARYNSGGRSVLFLTPTEMK-MLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQ 463
ARY G ++L L P+E + M+++L + K+P+ K N ++L V L + L + D++
Sbjct: 407 ARYKEDGEALLILLPSEEQGMVQQLLQKKVPVKEIKINPEKLIDVQKRLESFLAQDQDLK 466
Query: 464 HRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKP 523
RAQ+ F++Y+RSV++ KDKEVFDV KL I E++ SLGL + P+IRFL QK K P K
Sbjct: 467 ERAQRCFVSYIRSVYLMKDKEVFDVNKLPITEYALSLGLAVAPRIRFL-QKMEKQ-PNKE 524
Query: 524 VLDNAEKE 531
+ N E
Sbjct: 525 LGKNQVTE 532
Score = 40 (19.1 bits), Expect = 9.5e-135, Sum P(2) = 9.5e-135
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 549 ENVDRDILETKDIEDEGKADLLE-DVMRATRVKKNKKLKINVHRPL--GTRLVFDEE 602
E+ + +TK ++ K + E D +R R + KK K PL G L DEE
Sbjct: 809 EDTKHKMSDTKKKQEMRKRNNTEVDDVRP-RSRHGKKAKWETLEPLDTGLSLAEDEE 864
>ZFIN|ZDB-GENE-071022-2 [details] [associations]
symbol:ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
10" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-071022-2 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 EMBL:CR450711 IPI:IPI00898518
Ensembl:ENSDART00000125785 ArrayExpress:F1QMM9 Bgee:F1QMM9
Uniprot:F1QMM9
Length = 875
Score = 1293 (460.2 bits), Expect = 5.2e-134, Sum P(2) = 5.2e-134
Identities = 267/557 (47%), Positives = 384/557 (68%)
Query: 65 STRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPV 124
+ +F P+SKKT GL +A + + T+IQR ++ +L GRD+LGAAKTGSGKTLAF+IPV
Sbjct: 69 AVKFSDFPLSKKTLKGLLEAQYRQPTEIQRQTIGFALQGRDVLGAAKTGSGKTLAFLIPV 128
Query: 125 LEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKE 184
LE LY+E+W DG+G++IISPTRELA Q F+VL+ VGK+H FSAGL+IGG+ D+ E E
Sbjct: 129 LECLYREQWTAMDGLGALIISPTRELAYQTFEVLRKVGKNHEFSAGLVIGGK-DLKDESE 187
Query: 185 HVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKH 244
++ NI++CTPGRLLQHMDET F S L +L+LDEADRILD+GF LNAIV LPK
Sbjct: 188 KIHRTNIIICTPGRLLQHMDETATFHASDLHMLVLDEADRILDMGFADTLNAIVENLPKS 247
Query: 245 RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWS 304
RQT LFSATQT+SV+DLARLSLKDP+Y+ VHE++ +TP L+Q ++ L QK++ML+S
Sbjct: 248 RQTLLFSATQTRSVKDLARLSLKDPEYVWVHEQAKFSTPATLEQNYVVCELHQKVNMLYS 307
Query: 305 FIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS 364
F+++HL KI+VF CK+V+Y+F F +LRPGI ++ L+G+ +Q +R+ +Y F K S
Sbjct: 308 FLRSHLQKKIIVFFACCKEVQYLFRIFCRLRPGISVLALHGKQQQMKRVEVYNDFVRKTS 367
Query: 365 -VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 423
VLF TD+A+RGLDF AV+WV+Q DCPED +YIHRVGRTARY GG ++L L P+E K
Sbjct: 368 AVLFATDIAARGLDF-PAVNWVLQFDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEEK 426
Query: 424 -MLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKD 482
M+ +L+E K+PI+ + N ++L V L A L + + + RAQ+ F++YLRSV++ K+
Sbjct: 427 GMISQLQEKKVPINKIQVNPEKLMSVQQKLEAFLAQEKEQKERAQRCFVSYLRSVYLMKN 486
Query: 483 KEVFDVTKLSIDEFSASLGLPMTPKIRFL-NQKKGKMVPVKPVLDNA--EKEDKLM---- 535
K+VFDV +L + E++ SLGL + P++RFL ++ + + A + ED+L
Sbjct: 487 KDVFDVLQLKLPEYAMSLGLAVAPRVRFLLKAQQQRRTAAQDDSSTAGHQSEDELQSFTA 546
Query: 536 -ISREKLLPD-NFTEENVDRDILETKDI-----EDEGKADLLE-DVMRATRVKKNKKLKI 587
+ ++K + + +EE+ D+D L+ + E++ D E D++ K + L
Sbjct: 547 QLQQQKTKSEPSQSEEDKDQDSLKPLSLLCGFNEEDDDDDQREADLLTVKSAKTH--LIP 604
Query: 588 NVHRPLGTRLVFDEECN 604
V+R + V ++ N
Sbjct: 605 EVNRSIQVESVLSQDLN 621
Score = 41 (19.5 bits), Expect = 5.2e-134, Sum P(2) = 5.2e-134
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 693 RRKKAKIYFDSDSDNDNDERKQNKDD 718
+ K+ K D D D+++D+ + D+
Sbjct: 764 QHKEEKRKADGDDDDNDDDEDEGADE 789
Score = 40 (19.1 bits), Expect = 6.7e-134, Sum P(2) = 6.7e-134
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 693 RRKKAKIYFDSDSDNDNDERKQNKDDNGPN 722
+ +K K D D DND+DE + ++ P+
Sbjct: 766 KEEKRKADGDDD-DNDDDEDEGADEEFDPS 794
>UNIPROTKB|Q08DT0 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP EMBL:DAAA02040206 EMBL:DAAA02040207
EMBL:DAAA02040208 EMBL:DAAA02040209 EMBL:DAAA02040210
EMBL:DAAA02040211 EMBL:DAAA02040212 EMBL:DAAA02040213
EMBL:DAAA02040214 EMBL:DAAA02040215 EMBL:DAAA02040216
EMBL:DAAA02040217 EMBL:BC123579 IPI:IPI00717487
RefSeq:NP_001070349.1 UniGene:Bt.63620 SMR:Q08DT0
Ensembl:ENSBTAT00000003086 GeneID:528483 KEGG:bta:528483
InParanoid:Q08DT0 NextBio:20874836 Uniprot:Q08DT0
Length = 876
Score = 1306 (464.8 bits), Expect = 3.0e-133, P = 3.0e-133
Identities = 260/506 (51%), Positives = 370/506 (73%)
Query: 47 KKEPIGRIGEDSFSKYVGS-TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRD 105
++E I R+ ++ V TRF P+SKKT GL++A + +T+IQ+ ++ +L G+D
Sbjct: 49 EREVISRLMQNYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKD 108
Query: 106 ILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH 165
+LGAAKTGSGKTLAF++PVLE LY+ +W DG+G +IISPTRELA Q F+VL+ VGK+H
Sbjct: 109 VLGAAKTGSGKTLAFLVPVLEALYRLQWTSADGLGVLIISPTRELAYQTFEVLRKVGKNH 168
Query: 166 NFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRI 225
+FSAGL+IGG+ D+ E E +N +NILVCTPGRLLQHMDET F + LQ+L+LDEADRI
Sbjct: 169 DFSAGLIIGGK-DLKHEAERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRI 227
Query: 226 LDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNR 285
LD+GF +NAI+ LPK RQT LFSATQTKSV+DLARLSLK+P+Y+ VHE++ +TP
Sbjct: 228 LDMGFADTMNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPAT 287
Query: 286 LQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG 345
L+Q ++ L+QK+ +L+SF+++HL K +VF +SCK+V+Y++ F +LRPG+ L+ L+G
Sbjct: 288 LEQNYIVCELQQKISVLYSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSLLALHG 347
Query: 346 RMKQDRRMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRT 404
R +Q RRM +Y +F KR+ VLF TD+A+RGLDF AV+WV+Q DCPED +YIHR GRT
Sbjct: 348 RQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDF-PAVNWVLQFDCPEDANTYIHRAGRT 406
Query: 405 ARYNSGGRSVLFLTPTEMK-MLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQ 463
ARY G ++L L P+E K M+++L + K+P+ K N ++L V L + L + D++
Sbjct: 407 ARYKEDGEALLILLPSEEKGMVQQLLQKKVPVKEIKINPEKLIDVQKKLESFLAQDQDLK 466
Query: 464 HRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKP 523
RAQ+ FI+Y+RSV++ KDKE+FDV+KL I +++ SLGL + P+IRFL Q+ K P K
Sbjct: 467 ERAQRCFISYIRSVYLMKDKEIFDVSKLPISDYALSLGLAVAPRIRFL-QRMQKQ-PSKE 524
Query: 524 VLDNAEKEDKLMISREKLLPDNFTEE 549
++ +++K+ R L ++ EE
Sbjct: 525 LV--VSEDNKVTEPRAPSLTNDEVEE 548
>UNIPROTKB|E2RC35 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 GeneTree:ENSGT00550000074980
CTD:1662 OMA:ADKVIEP EMBL:AAEX03003508 RefSeq:XP_536583.2
Ensembl:ENSCAFT00000022758 GeneID:479448 KEGG:cfa:479448
Uniprot:E2RC35
Length = 871
Score = 1303 (463.7 bits), Expect = 6.2e-133, P = 6.2e-133
Identities = 257/506 (50%), Positives = 370/506 (73%)
Query: 47 KKEPIGRIGEDSFSKYVGS-TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRD 105
++E I R+ ++ V TRF P+SKKT GL++A + +T+IQ+ ++ +L G+D
Sbjct: 49 EREAISRLTQNYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKD 108
Query: 106 ILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH 165
+LGAAKTGSGKTLAF++PVLE LY+ +W DG+G +IISPTRELA Q F+VL+ VGK+H
Sbjct: 109 VLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNH 168
Query: 166 NFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRI 225
+FSAGL+IGG+ D+ E E +N +NILVCTPGRLLQHMDET F + LQ+L+LDEADRI
Sbjct: 169 DFSAGLIIGGK-DLKHEAERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRI 227
Query: 226 LDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNR 285
LD+GF +NAI+ LPK RQT LFSATQTKSV+DLARLSLK+P+Y+ VHE++ +TP
Sbjct: 228 LDMGFADTMNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYIWVHEKAKYSTPAT 287
Query: 286 LQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG 345
L+Q ++ L+QK+ +L+SF+++HL K +VF +SCK+V+Y++ F +LRPGI ++ L+G
Sbjct: 288 LEQNYIVCELQQKISVLYSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHG 347
Query: 346 RMKQDRRMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRT 404
R +Q RRM +Y +F KRS VLF TD+A+RGLDF AV+WV+Q DCPED +YIHR GRT
Sbjct: 348 RQQQMRRMEVYNEFVRKRSAVLFATDIAARGLDF-PAVNWVLQFDCPEDANTYIHRAGRT 406
Query: 405 ARYNSGGRSVLFLTPTEMK-MLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQ 463
ARY G ++L L P+E K M+++L + K+P+ K N ++L V L + L + D++
Sbjct: 407 ARYKEDGEALLILLPSEEKGMVQQLLQKKVPVKEIKINPEKLIDVQKKLESFLAQDKDLK 466
Query: 464 HRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKP 523
RAQ+ F++Y+RSV++ K+KE+FDV+ L + E++ SLGL + P++RFL QK K P K
Sbjct: 467 ERAQRCFVSYIRSVYLMKNKEIFDVSTLPVPEYALSLGLAVAPRVRFL-QKMQKQ-PTKE 524
Query: 524 VLDNAEKEDKLMISREKLLPDNFTEE 549
++ ++++++ R L ++ EE
Sbjct: 525 LM--VSQDNQVIEPRAPSLTNDEVEE 548
>UNIPROTKB|A4RGU2 [details] [associations]
symbol:DBP4 "ATP-dependent RNA helicase DBP4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 GO:GO:0043581 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM001232 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 OrthoDB:EOG4R53B0
RefSeq:XP_003715000.1 ProteinModelPortal:A4RGU2 STRING:A4RGU2
EnsemblFungi:MGG_08049T0 GeneID:2678339 KEGG:mgr:MGG_08049
Uniprot:A4RGU2
Length = 798
Score = 1205 (429.2 bits), Expect = 2.4e-130, Sum P(3) = 2.4e-130
Identities = 244/489 (49%), Positives = 345/489 (70%)
Query: 57 DSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGK 116
D F F +LP+S+ T G++D+ F +TDIQ ++P +L GRDILGAAKTGSGK
Sbjct: 40 DEFDLKSTPKAFAELPLSEPTAKGVRDSHFETLTDIQARAIPLALKGRDILGAAKTGSGK 99
Query: 117 TLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGR 176
TLAF++P+LEKLY+E+W E +G++++SPTRELA Q F VL+ +G+HH FSAGL+IGG+
Sbjct: 100 TLAFLVPLLEKLYREQWTQEAKLGALVLSPTRELAVQTFQVLRKIGRHHLFSAGLVIGGK 159
Query: 177 RDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNA 236
V E E ++ +NIL+ TPGR+LQH+D+T FD LQ+L+LDEADRI+D+GF++ ++A
Sbjct: 160 -SVREEAEALSRMNILIGTPGRILQHLDQTHGFDVDNLQLLVLDEADRIMDLGFQRDVDA 218
Query: 237 IVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLE 296
+V LP RQT LFSATQ+K V DLARLSLKDP+Y+SVH E+ TATP+ LQQ ++ PL
Sbjct: 219 LVQHLPTTRQTLLFSATQSKKVSDLARLSLKDPEYVSVHAEATTATPSTLQQHYIVTPLP 278
Query: 297 QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIY 356
+KLD LW FIKA+L SK++VFL+S KQV++V+E+F++++PGIPL+ ++GR KQ R+ +
Sbjct: 279 EKLDTLWGFIKANLKSKMVVFLSSGKQVRFVYESFRQMQPGIPLLHMHGRQKQLARLDVT 338
Query: 357 AQF-CEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVL 415
+F K + LF TDV +RG+DF VDWVVQVD PED YIHRVGRTARY G++V+
Sbjct: 339 KRFDSSKHACLFATDVIARGIDFT-GVDWVVQVDAPEDTDDYIHRVGRTARYEREGKAVI 397
Query: 416 FLTPTEMK-MLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYL 474
FL P+E ML++L K+PI A + + + L ++ K D+++ AQKAFI+Y
Sbjct: 398 FLDPSEEAGMLKRLERKKVPITKVTAKDSKKKSIRDELQSICWKSHDVKYLAQKAFISYA 457
Query: 475 RSVH--IQKDK-------EVFDVTKLSIDEFSASLGLPMTPKIRFL---NQKKGKMVPVK 522
R+VH ++D+ +VF KL ++ F+ S+GL P+I+F + K+ K P
Sbjct: 458 RAVHRATERDEKHNENSDQVFKFDKLDLEGFAKSMGLAGAPQIKFQKGEDVKRMKNAPRA 517
Query: 523 PVLDNAEKE 531
P+ +E E
Sbjct: 518 PLSSGSEDE 526
Score = 64 (27.6 bits), Expect = 2.4e-130, Sum P(3) = 2.4e-130
Identities = 29/119 (24%), Positives = 53/119 (44%)
Query: 526 DNAEKEDKLMISREKLLPDNFTEENVDRDI-LETKDIEDEGKADLLEDVMRATRVKKNKK 584
+N E+ED ++ L D E L T D G +L+ D R ++ K+KK
Sbjct: 568 ENDEEED-FFTTKRVLRGDELDEAAGGAGAGLPTAKTIDLGGTELVLDSKRREKLIKSKK 626
Query: 585 LKINVHRPLGTRLVFDEECNTVPPLAMLADTKNANVSLDQDQ-KTEYYKKIREELKRAD 642
+ + G +LVFD++ PL L D + + + ++ ++ +++K AD
Sbjct: 627 QLAKL-KGKGQKLVFDDD-GVAHPLYTLQDEDDFKQQGPAEALRKQFVEQEGDKVKEAD 683
Score = 46 (21.3 bits), Expect = 1.9e-128, Sum P(3) = 1.9e-128
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 544 DNFTEENVDRDILETKDIEDEG----KADLLEDVMRATRVKKNKKLK 586
D+F ++ + L + +E EG +AD+ +D A + K+ KKLK
Sbjct: 656 DDFKQQG-PAEALRKQFVEQEGDKVKEADI-DDKALAKQKKREKKLK 700
Score = 45 (20.9 bits), Expect = 2.4e-130, Sum P(3) = 2.4e-130
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 694 RKKAKIYFDSDSDNDNDERK 713
+KK K +F DSD DERK
Sbjct: 754 KKKPKKWFQDDSD---DERK 770
Score = 38 (18.4 bits), Expect = 2.1e-124, Sum P(2) = 2.1e-124
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 531 EDKLMISREKLLPDN-FTEENVDRDILETKDIEDEGKADLLED 572
+D+ R K P F +++ D ++K IE + + D LED
Sbjct: 745 DDESEDERPKKKPKKWFQDDSDDERKPKSKVIELDHEPDTLED 787
>CGD|CAL0004182 [details] [associations]
symbol:HCA4 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004182 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 EMBL:AACQ01000023 EMBL:AACQ01000025
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_720233.1 RefSeq:XP_720463.1 ProteinModelPortal:Q5AF95
STRING:Q5AF95 GeneID:3637911 GeneID:3638091 KEGG:cal:CaO19.10227
KEGG:cal:CaO19.2712 KO:K14776 InterPro:IPR025313 Pfam:PF13959
Uniprot:Q5AF95
Length = 765
Score = 1177 (419.4 bits), Expect = 1.9e-126, Sum P(3) = 1.9e-126
Identities = 235/455 (51%), Positives = 326/455 (71%)
Query: 66 TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVL 125
++F LPI++ T GLK+A FV +TDIQ+ ++P +L G D++G A+TGSGKTLAF+IPV+
Sbjct: 48 SQFSDLPITENTLKGLKEATFVSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLIPVI 107
Query: 126 EKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEH 185
E L + + DG+ ++I+SPTRELA Q+F+VL +GK++ FSAGL+ GG+ DV EKE
Sbjct: 108 ESLIRNKITEYDGLAALIVSPTRELAVQIFEVLTKIGKYNTFSAGLVTGGK-DVQFEKER 166
Query: 186 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHR 245
V+ +NILV TPGR+ QH++E + S LQ+L+LDEADR LD+GFKK ++ I+ LP R
Sbjct: 167 VSRMNILVGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNILGHLPTTR 226
Query: 246 QTFLFSATQTKSVQDLARLSLKDPQYLSVH-EESVTATPNRLQQTAMIVPLEQKLDMLWS 304
QT LFSATQ++SV DLARLSL +P + V ++ V+ATP L+Q + VPL++KLD+LWS
Sbjct: 227 QTLLFSATQSESVNDLARLSLTNPNKIGVSSDQEVSATPESLEQYYVKVPLDEKLDVLWS 286
Query: 305 FIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KR 363
FIK+HL SKILVF +S KQV+Y +E F+ L+PGI LM LYGR KQ R+ +F + +
Sbjct: 287 FIKSHLKSKILVFFSSSKQVQYTYETFRTLQPGISLMKLYGRHKQTSRLETTMKFSQAQH 346
Query: 364 SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 423
+ LF TD+ +RGLDF A+DWVVQVDCPED A+Y+HRVGR+AR+ G+S+L L P+E +
Sbjct: 347 ACLFATDIVARGLDF-PAIDWVVQVDCPEDAATYVHRVGRSARFGRKGKSLLMLLPSEEE 405
Query: 424 -MLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKD 482
ML++L+ KI K + + L +L K P M++ Q+AFI Y +SVHIQKD
Sbjct: 406 GMLKRLKIHKIEPKLMNIKQKSKKSIRPQLQSLCFKDPVMKNLGQRAFIAYFKSVHIQKD 465
Query: 483 KEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGK 517
K+VF V +L + ++ASLGLP PKI+ + K
Sbjct: 466 KDVFKVEELPAESYAASLGLPGAPKIKIKGGESNK 500
Score = 57 (25.1 bits), Expect = 1.9e-126, Sum P(3) = 1.9e-126
Identities = 27/103 (26%), Positives = 46/103 (44%)
Query: 545 NFTEENVDRDILETKDIEDEGKADLLEDV---MRATRVKKNKKLKINV-HRPLGTRLVFD 600
N E+ D D + K + E K + L D+ + + KK K + + T+L FD
Sbjct: 557 NSDGESEDEDFMTVKRKDHELKEEELPDLTIPVSKRQAKKALSRKATLASKGNPTKLKFD 616
Query: 601 EECNTVPPLAMLADTKNANVSLD-QDQKTEYYKKIREELKRAD 642
++ + L D + + D + QK E+ K RE +K +D
Sbjct: 617 DD-GVAHAIYELEDEDDFIKAGDAKKQKEEFVNKERETMKISD 658
Score = 48 (22.0 bits), Expect = 1.7e-125, Sum P(3) = 1.7e-125
Identities = 30/121 (24%), Positives = 52/121 (42%)
Query: 470 FITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFL-NQKKGKMVP--VKPVLD 526
F+T R H K++E+ D+T + + + A L + N K K V +
Sbjct: 567 FMTVKRKDHELKEEELPDLT-IPVSKRQAKKALSRKATLASKGNPTKLKFDDDGVAHAIY 625
Query: 527 NAEKEDKLMISRE-KLLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKL 585
E ED + + + K + F N +R+ ++ DI D+ +V R R +K +K
Sbjct: 626 ELEDEDDFIKAGDAKKQKEEFV--NKERETMKISDITDK-------EVERQKRQEKKRKR 676
Query: 586 K 586
K
Sbjct: 677 K 677
Score = 43 (20.2 bits), Expect = 1.9e-126, Sum P(3) = 1.9e-126
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 1 MKKSKR---KPNRKAVRSMEIEEIELLNSWIDSQKPES 35
+KK K+ K RK R E EE+ L I++ P++
Sbjct: 5 LKKGKKVFNKSTRKINRLKEEEELAKLQERINNYDPKT 42
>WB|WBGene00021277 [details] [associations]
symbol:Y23H5B.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003723 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268801 GeneTree:ENSGT00550000074980 OMA:ADKVIEP
HSSP:P10081 EMBL:FO080963 RefSeq:NP_490989.1
ProteinModelPortal:Q9N478 SMR:Q9N478 STRING:Q9N478 PaxDb:Q9N478
EnsemblMetazoa:Y23H5B.6 GeneID:171810 KEGG:cel:CELE_Y23H5B.6
UCSC:Y23H5B.6 CTD:171810 WormBase:Y23H5B.6 InParanoid:Q9N478
NextBio:872791 Uniprot:Q9N478
Length = 732
Score = 1230 (438.0 bits), Expect = 3.4e-125, P = 3.4e-125
Identities = 257/586 (43%), Positives = 374/586 (63%)
Query: 67 RFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLE 126
RF+ P+S +T GLKD + K T+IQR ++ +SL G D++GAAKTGSGKTLA VIPVLE
Sbjct: 77 RFEDFPLSWRTLEGLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLE 136
Query: 127 KLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV 186
L++ +W P+ G+G++IISPTRELA Q F + AVG HH FS GL+IGG DV E+ +
Sbjct: 137 ALWRAKWSPDYGLGALIISPTRELALQTFSTINAVGAHHGFSCGLVIGGS-DVAFERNRI 195
Query: 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246
+ +NI+VCTPGRLLQHMDE C LQ+L+LDEADR+LD+GF K LN+I++ LP RQ
Sbjct: 196 SGINIIVCTPGRLLQHMDENAQMSCDSLQVLVLDEADRMLDMGFSKQLNSIINNLPAERQ 255
Query: 247 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFI 306
T LFSATQT++V+DL R+ DP ++SVHE + ATP+ L+Q+ +IV E K++ LWSFI
Sbjct: 256 TLLFSATQTRNVKDLCRVCTNDPVFVSVHENASAATPDNLKQSYVIVEEEHKINALWSFI 315
Query: 307 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSV 365
+AH K LVF++SCKQ +++ EAF +LRPG+P+M L+G M Q +R+ + +F E K +V
Sbjct: 316 EAHRKKKSLVFVSSCKQARFLTEAFSQLRPGLPVMGLWGTMNQKKRIETFTKFDESKAAV 375
Query: 366 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT-EMKM 424
L TDVASRGLDF +DWV+QVDCP + YIHRVGR+AR + G S+L ++P+ E M
Sbjct: 376 LIATDVASRGLDFEH-IDWVIQVDCPAQIDDYIHRVGRSARMDDSGNSLLMVSPSQEEAM 434
Query: 425 LEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKE 484
+ KL + IPI K + + V L A+L + +++ AQK+ + YLRS++ KDK+
Sbjct: 435 IGKLEKHSIPIEELKIHPDAMSDVRVKLRAILAESQELKEYAQKSIVAYLRSIYTMKDKK 494
Query: 485 VFDVTKLSIDEFSASLGLPMTPKIRFLNQK---KGKMVPVKPVLDNAEKEDKLMISREKL 541
VFDV + + S GL P++RFLN+K G+ + K V + E+E+ ++ + +
Sbjct: 495 VFDVEAIDAAALADSFGLVSVPRVRFLNKKAKKSGEKLMEKEVKE--EEEEASLVGKFAI 552
Query: 542 LPDNFTEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINVHRPLGTRLVFDE 601
D+ V + E + I++E A+ + ++ + K K LK V + + + ++
Sbjct: 553 DEDDEDIFTVKKPTGEPEQIKEEEAAEKISNIT----ISKTKPLKKAVTKVSAAKKILNK 608
Query: 602 EC--NTVPPLAMLADTKNANVSLDQDQKTEY---YKKIREELKRAD 642
+ NT D + + T Y +K R+E+K D
Sbjct: 609 KLKVNTKKTFGA-EDDELEELEEGPSTITSYGLDIEKARQEIKSGD 653
>SGD|S000003570 [details] [associations]
symbol:HCA4 "DEAD box RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0005730 "nucleolus" evidence=IEA;IC]
[GO:0006364 "rRNA processing" evidence=IEA;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA;IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000003570
GO:GO:0005524 GO:GO:0005730 EMBL:BK006943 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 EMBL:U72149 EMBL:Z49308 EMBL:AY693118
PIR:S56805 RefSeq:NP_012501.1 ProteinModelPortal:P20448 SMR:P20448
DIP:DIP-6819N IntAct:P20448 MINT:MINT-620511 STRING:P20448
PaxDb:P20448 PeptideAtlas:P20448 EnsemblFungi:YJL033W GeneID:853419
KEGG:sce:YJL033W CYGD:YJL033w GeneTree:ENSGT00550000074980
NextBio:973942 Genevestigator:P20448 GermOnline:YJL033W
Uniprot:P20448
Length = 770
Score = 1176 (419.0 bits), Expect = 4.5e-124, Sum P(2) = 4.5e-124
Identities = 244/458 (53%), Positives = 330/458 (72%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F LPIS T GL+++ F+K+T+IQ S+P SL G D+L AAKTGSGKTLAF++PV+EK
Sbjct: 43 FKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEK 102
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
LY+E+W DG+G++IISPTRELA Q+++VL +G H +FSAGL+IGG+ DV E E ++
Sbjct: 103 LYREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGK-DVKFELERIS 161
Query: 188 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQT 247
+NIL+ TPGR+LQH+D+ + S LQ+L+LDEADR LD+GFKK L+AIVS L RQT
Sbjct: 162 RINILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPSRQT 221
Query: 248 FLFSATQTKSVQDLARLSLKDPQYLSVHEE---SVT---ATPNRLQQTAMIVPLEQKLDM 301
LFSATQ++SV DLARLSL D + + H+ SV +TP LQQ + VPL KLD+
Sbjct: 222 LLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADKLDI 281
Query: 302 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 361
L+SFIK+HL K++VFL+S KQV +V+E F+K++PGI LM L+GR KQ R +F
Sbjct: 282 LFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDKFNR 341
Query: 362 KRSV-LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 420
+ V LF TDV +RG+DF AVDWVVQVDCPEDV +YIHRVGR ARY G+S++ LTP
Sbjct: 342 AQQVCLFATDVVARGIDF-PAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLTPQ 400
Query: 421 EMK-MLEKLREAKI-P--IHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRS 476
E + L++L KI P ++ ++ K ++P L +LL K P++++ QKAFI+Y+RS
Sbjct: 401 EQEAFLKRLNARKIEPGKLNIKQSKKKSIKPQ---LQSLLFKDPELKYLGQKAFISYVRS 457
Query: 477 VHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQK 514
+++QKDK+VF +L +EF+ SLGLP PKI+ K
Sbjct: 458 IYVQKDKQVFKFDELPTEEFAYSLGLPGAPKIKMKGMK 495
Score = 64 (27.6 bits), Expect = 4.5e-124, Sum P(2) = 4.5e-124
Identities = 28/112 (25%), Positives = 54/112 (48%)
Query: 529 EKEDKLMISREKL-LPDNFTEENVDRDILETKDIEDE-GKADL----LEDVMRATRVKKN 582
E++++ ++S L + +E+ D D + K + E +A+L L RA + +
Sbjct: 539 ERKNQTILSEHYLNITKAQAQEDEDDDFISVKRKDHEINEAELPALTLPTSRRAQKKALS 598
Query: 583 KKLKINVHRPLGTRLVFDEECNTVPPLAMLADTKNANVSLDQD-QKTEYYKK 633
KK + + ++L+FD+E P+ L D + + D + QKTE+ K
Sbjct: 599 KKASL-ASKGNASKLIFDDE-GEAHPVYELEDEEEFHKRGDAEVQKTEFLTK 648
Score = 42 (19.8 bits), Expect = 9.4e-122, Sum P(2) = 9.4e-122
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 610 AMLADTKNANVSLDQDQKTEYYKKIREELKR 640
A++AD N + + +++K E +K E ++R
Sbjct: 651 AVMADIDNIDKQVAKEKKQEKKRKRLEAMRR 681
>FB|FBgn0030855 [details] [associations]
symbol:CG5800 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007526 "larval somatic muscle development"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0022008 EMBL:AE014298
GO:GO:0006200 GO:GO:0003723 GO:GO:0007526 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
KO:K14776 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 OMA:ADKVIEP HSSP:P10081 EMBL:AY119628
RefSeq:NP_573230.1 UniGene:Dm.13464 SMR:Q9VX34 STRING:Q9VX34
EnsemblMetazoa:FBtr0074453 GeneID:32742 KEGG:dme:Dmel_CG5800
UCSC:CG5800-RA FlyBase:FBgn0030855 InParanoid:Q9VX34
OrthoDB:EOG4MCVFH GenomeRNAi:32742 NextBio:780142 Uniprot:Q9VX34
Length = 826
Score = 1071 (382.1 bits), Expect = 9.0e-111, Sum P(2) = 9.0e-111
Identities = 217/382 (56%), Positives = 279/382 (73%)
Query: 67 RFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLE 126
+F Q P+SKKT+ L ++ FV T +QR S+ +L G+D+LGAA TGSGKTLAF+IPVLE
Sbjct: 73 KFAQFPLSKKTQKALAESKFVHPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVLE 132
Query: 127 KLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV 186
L+ +W DGVG+IIISPTRELA Q+F+ LK VGKHH+FSAGL+IGG+ ++ E+ +
Sbjct: 133 HLFMNKWSRTDGVGAIIISPTRELAYQIFETLKKVGKHHDFSAGLIIGGK-NLKFERTRM 191
Query: 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246
++ NIL+CTPGRLLQHMDE P F+ S +++L+LDEADR LD+GF+K LN+I+ P RQ
Sbjct: 192 DQCNILICTPGRLLQHMDENPLFNTSTMEMLVLDEADRCLDMGFQKTLNSIIENFPPVRQ 251
Query: 247 TFLFSATQTKSVQDLARLSLKDPQYLSV-----HEE-----------SVTATPNRLQQTA 290
T LFSATQT +VQDLARL+LKDP Y+ EE +V A P LQQ+
Sbjct: 252 TLLFSATQTNTVQDLARLNLKDPVYVGYGGATPREEPSASTKKTPNTAVLAVPELLQQSY 311
Query: 291 MIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQD 350
+++ LE K+ MLWSFIK HL KI+VF+ SCKQ KY++E F KLRPG PL+ LYG + QD
Sbjct: 312 VVLNLEDKITMLWSFIKNHLKQKIIVFVASCKQAKYLYEIFCKLRPGSPLLALYGTLHQD 371
Query: 351 RRMAIYAQFCEKRSV-LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNS 409
RR+AIY F K V +F TDVASRGLDF AV+WVVQ+DCPEDV+ YIHR GR+AR +
Sbjct: 372 RRIAIYEDFLRKSHVVMFSTDVASRGLDF-PAVNWVVQLDCPEDVSQYIHRAGRSARNKT 430
Query: 410 GGRSVLFLTPTEMK-MLEKLRE 430
G +L LTP+E + M+ L+E
Sbjct: 431 RGECLLVLTPSEEEYMISALKE 452
Score = 609 (219.4 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 132/307 (42%), Positives = 200/307 (65%)
Query: 278 SVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPG 337
+V A P LQQ+ +++ LE K+ MLWSFIK HL KI+VF+ SCKQ KY++E F KLRPG
Sbjct: 299 AVLAVPELLQQSYVVLNLEDKITMLWSFIKNHLKQKIIVFVASCKQAKYLYEIFCKLRPG 358
Query: 338 IPLMCLYGRMKQDRRMAIYAQFCEKRSV-LFCTDVASRGLDFNKAVDWVVQVDCPEDVAS 396
PL+ LYG + QDRR+AIY F K V +F TDVASRGLDF AV+WVVQ+DCPEDV+
Sbjct: 359 SPLLALYGTLHQDRRIAIYEDFLRKSHVVMFSTDVASRGLDF-PAVNWVVQLDCPEDVSQ 417
Query: 397 YIHRVGRTARYNSGGRSVLFLTPTEMK-MLEKLREA-KIPIHFTKANTKRLQPVSGLLAA 454
YIHR GR+AR + G +L LTP+E + M+ L+E I I + + K+L + A
Sbjct: 418 YIHRAGRSARNKTRGECLLVLTPSEEEYMISALKEQLNIDIRCVQIDPKKLFSPRVKIEA 477
Query: 455 LLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQ- 513
L ++P+++ AQ+AF++Y++SV + ++K +F+V L +D F+ SLGL +TP++ FL +
Sbjct: 478 FLAQFPELRATAQRAFLSYIKSVFLMRNKRLFNVFSLDLDAFAQSLGLAVTPRVPFLEKF 537
Query: 514 --KKGKMVPVKPVLDNAEKEDKLM--ISREKLLP--DNFTEENVDRDILETK--DIEDEG 565
++ ++ K DNA+ + L+ +++++ D E + D D ++ K D + EG
Sbjct: 538 LWRQKQLQQQKEQGDNAKSINPLLSKLTKQQSFGGGDEDEENSDDEDFIKVKRKDHDVEG 597
Query: 566 KADLLED 572
+ L++
Sbjct: 598 EPVKLDE 604
Score = 43 (20.2 bits), Expect = 9.0e-111, Sum P(2) = 9.0e-111
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 694 RKKAKIYFDSDSDNDNDERKQNKDDNGPNIDSIS 727
RKKA+ ++ +DE +Q DDN + S S
Sbjct: 716 RKKAE-----EAKGSDDEEEQQDDDNADDAGSES 744
Score = 41 (19.5 bits), Expect = 1.5e-110, Sum P(2) = 1.5e-110
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 688 SMERGRRKKAKIYFDSDSDNDNDERKQNK 716
++++ + +K+ FD + + D+R Q K
Sbjct: 634 ALKKNLQVNSKLKFDDEGETMADDRSQMK 662
>UNIPROTKB|F1MSX0 [details] [associations]
symbol:F1MSX0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:DAAA02009745
IPI:IPI00903923 Ensembl:ENSBTAT00000039166 Uniprot:F1MSX0
Length = 674
Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
Identities = 213/531 (40%), Positives = 319/531 (60%)
Query: 2 KKSKRK------PNRKAVRSMEIEEIELLNSWIDSQKPESGTNPLSFPP-LGKKEPIGRI 54
KK KRK P+ K ++ +I E E +Q PE N + P G+ + +
Sbjct: 116 KKKKRKVVDDAGPDSKKAKAEDIGEAE-----DGAQAPEETENRVEKPDDEGEDSEVPSL 170
Query: 55 GEDSFSKYVGSTRFDQLP--ISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKT 112
+ T FD L +++ T +K+ GF MT+IQ S+ L GRD+L AAKT
Sbjct: 171 PLGLTGAFE-DTSFDSLTNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKT 229
Query: 113 GSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLL 172
GSGKTLAF+IP +E + K ++ P +G G +I+SPTRELA Q F VLK + HH + GL+
Sbjct: 230 GSGKTLAFLIPAVELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLI 289
Query: 173 IGG-RRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFK 231
+GG R + +K N +NI+V TPGRLL HM TP F LQ L++DEADRILDVGF+
Sbjct: 290 MGGSNRSAEAQKL-ANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFE 348
Query: 232 KALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLK-DPQYLSVHEESVTATPNRLQQTA 290
+ L I+ LP RQT LFSATQT+ V+DLAR+SLK +P Y+ V ++ AT + L+Q
Sbjct: 349 EELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGY 408
Query: 291 MIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQD 350
++ P E++ +L++F+K + K++VF +SCK VKY +E + +P++ ++GR KQ+
Sbjct: 409 VVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYI--DLPVLAIHGRQKQN 466
Query: 351 RRMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR-YN 408
+R + QFC S +L CTDVA+RGLD + VDW+VQ D P+D YIHRVGRTAR N
Sbjct: 467 KRTTTFFQFCNADSGILLCTDVAARGLDIPE-VDWIVQYDPPDDPKEYIHRVGRTARGLN 525
Query: 409 SGGRSVLFLTPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQK 468
G ++L L P E+ L L+++K+P+ + + ++ + L L+ K + AQ+
Sbjct: 526 GRGHALLILRPEELGFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQE 585
Query: 469 AFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRF-LNQKKGKM 518
A+ +Y+R+ K++F+V L++ + + S G + P + +N GK+
Sbjct: 586 AYKSYIRAYDSHSLKQIFNVNNLNLPQVALSFGFKVPPFVDLNVNTNDGKV 636
>UNIPROTKB|F1N533 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:DAAA02005160 IPI:IPI00904747
Ensembl:ENSBTAT00000045489 OMA:TENKGES Uniprot:F1N533
Length = 670
Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
Identities = 213/531 (40%), Positives = 319/531 (60%)
Query: 2 KKSKRK------PNRKAVRSMEIEEIELLNSWIDSQKPESGTNPLSFPP-LGKKEPIGRI 54
KK KRK P+ K ++ +I E E +Q PE N + P G+ + +
Sbjct: 112 KKKKRKVVDDAGPDSKKAKAEDIGEAE-----DGAQAPEETENRVEKPDDEGEDSEVPSL 166
Query: 55 GEDSFSKYVGSTRFDQLP--ISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKT 112
+ T FD L +++ T +K+ GF MT+IQ S+ L GRD+L AAKT
Sbjct: 167 PLGLTGAFE-DTSFDSLTNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKT 225
Query: 113 GSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLL 172
GSGKTLAF+IP +E + K ++ P +G G +I+SPTRELA Q F VLK + HH + GL+
Sbjct: 226 GSGKTLAFLIPAVELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLI 285
Query: 173 IGG-RRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFK 231
+GG R + +K N +NI+V TPGRLL HM TP F LQ L++DEADRILDVGF+
Sbjct: 286 MGGSNRSAEAQKL-ANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFE 344
Query: 232 KALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLK-DPQYLSVHEESVTATPNRLQQTA 290
+ L I+ LP RQT LFSATQT+ V+DLAR+SLK +P Y+ V ++ AT + L+Q
Sbjct: 345 EELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGY 404
Query: 291 MIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQD 350
++ P E++ +L++F+K + K++VF +SCK VKY +E + +P++ ++GR KQ+
Sbjct: 405 VVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYI--DLPVLAIHGRQKQN 462
Query: 351 RRMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR-YN 408
+R + QFC S +L CTDVA+RGLD + VDW+VQ D P+D YIHRVGRTAR N
Sbjct: 463 KRTTTFFQFCNADSGILLCTDVAARGLDIPE-VDWIVQYDPPDDPKEYIHRVGRTARGLN 521
Query: 409 SGGRSVLFLTPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQK 468
G ++L L P E+ L L+++K+P+ + + ++ + L L+ K + AQ+
Sbjct: 522 GRGHALLILRPEELGFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQE 581
Query: 469 AFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRF-LNQKKGKM 518
A+ +Y+R+ K++F+V L++ + + S G + P + +N GK+
Sbjct: 582 AYKSYIRAYDSHSLKQIFNVNNLNLPQVALSFGFKVPPFVDLNVNTNDGKV 632
>UNIPROTKB|F1RY13 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000017112 Uniprot:F1RY13
Length = 671
Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
Identities = 211/532 (39%), Positives = 315/532 (59%)
Query: 2 KKSKRKPNRKAVR-----SMEIEEIELLNSWIDSQKPESGTNPLSFPPLGKKE-----PI 51
KK K+K RK V S + + + +Q PE N + P P+
Sbjct: 110 KKKKKKKKRKIVDDAGPDSKKAKTEDKGEPGDSAQAPEETENSMEKPDKDDDTEVPSLPL 169
Query: 52 GRIGEDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAK 111
G G + + T +++ T +K+ GF MT+IQ S+ L GRD+L AAK
Sbjct: 170 GLTGAFEDTSFASLTDL----VNENTLRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAK 225
Query: 112 TGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGL 171
TGSGKTLAF+IP +E + K R+ P +G G +I+SPTRELA Q F VLK + HH + GL
Sbjct: 226 TGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL 285
Query: 172 LIGG-RRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGF 230
++GG R + +K N +NI+V TPGRLL HM TP F LQ L++DEADRILDVGF
Sbjct: 286 IMGGSNRSAEAQKL-ANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGF 344
Query: 231 KKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLK-DPQYLSVHEESVTATPNRLQQT 289
++ L I+ LP RQT LFSATQT+ V+DLAR+SLK +P Y+ V ++ AT + L+Q
Sbjct: 345 EEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQG 404
Query: 290 AMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ 349
++ P E++ +L++F+K + K++VF +SCK VKY +E + +P++ ++GR KQ
Sbjct: 405 YVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYI--DLPVLAIHGRQKQ 462
Query: 350 DRRMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR-Y 407
++R + QFC S +L CTDVA+RGLD + VDW+VQ D P+D YIHRVGRTAR
Sbjct: 463 NKRTTTFFQFCNADSGILLCTDVAARGLDIPE-VDWIVQYDPPDDPKEYIHRVGRTARGL 521
Query: 408 NSGGRSVLFLTPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQ 467
N G ++L L P E+ L L+++K+P+ + + ++ + L L+ K + AQ
Sbjct: 522 NGRGHALLILRPEELGFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQ 581
Query: 468 KAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRF-LNQKKGKM 518
+A+ +Y+R+ K++F+V L++ + + S G + P + +N GK+
Sbjct: 582 EAYKSYIRAYDSHSLKQIFNVNNLNLPQVALSFGFKVPPFVDLNVNSNDGKV 633
>UNIPROTKB|I3L7B7 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000025125 Uniprot:I3L7B7
Length = 696
Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
Identities = 211/532 (39%), Positives = 315/532 (59%)
Query: 2 KKSKRKPNRKAVR-----SMEIEEIELLNSWIDSQKPESGTNPLSFPPLGKKE-----PI 51
KK K+K RK V S + + + +Q PE N + P P+
Sbjct: 135 KKKKKKKKRKIVDDAGPDSKKAKTEDKGEPGDSAQAPEETENSMEKPDKDDDTEVPSLPL 194
Query: 52 GRIGEDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAK 111
G G + + T +++ T +K+ GF MT+IQ S+ L GRD+L AAK
Sbjct: 195 GLTGAFEDTSFASLTDL----VNENTLRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAK 250
Query: 112 TGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGL 171
TGSGKTLAF+IP +E + K R+ P +G G +I+SPTRELA Q F VLK + HH + GL
Sbjct: 251 TGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL 310
Query: 172 LIGG-RRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGF 230
++GG R + +K N +NI+V TPGRLL HM TP F LQ L++DEADRILDVGF
Sbjct: 311 IMGGSNRSAEAQKL-ANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGF 369
Query: 231 KKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLK-DPQYLSVHEESVTATPNRLQQT 289
++ L I+ LP RQT LFSATQT+ V+DLAR+SLK +P Y+ V ++ AT + L+Q
Sbjct: 370 EEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQG 429
Query: 290 AMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ 349
++ P E++ +L++F+K + K++VF +SCK VKY +E + +P++ ++GR KQ
Sbjct: 430 YVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYI--DLPVLAIHGRQKQ 487
Query: 350 DRRMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR-Y 407
++R + QFC S +L CTDVA+RGLD + VDW+VQ D P+D YIHRVGRTAR
Sbjct: 488 NKRTTTFFQFCNADSGILLCTDVAARGLDIPE-VDWIVQYDPPDDPKEYIHRVGRTARGL 546
Query: 408 NSGGRSVLFLTPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQ 467
N G ++L L P E+ L L+++K+P+ + + ++ + L L+ K + AQ
Sbjct: 547 NGRGHALLILRPEELGFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQ 606
Query: 468 KAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRF-LNQKKGKM 518
+A+ +Y+R+ K++F+V L++ + + S G + P + +N GK+
Sbjct: 607 EAYKSYIRAYDSHSLKQIFNVNNLNLPQVALSFGFKVPPFVDLNVNSNDGKV 658
>UNIPROTKB|I3L840 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000025310 Uniprot:I3L840
Length = 667
Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
Identities = 211/532 (39%), Positives = 315/532 (59%)
Query: 2 KKSKRKPNRKAVR-----SMEIEEIELLNSWIDSQKPESGTNPLSFPPLGKKE-----PI 51
KK K+K RK V S + + + +Q PE N + P P+
Sbjct: 106 KKKKKKKKRKIVDDAGPDSKKAKTEDKGEPGDSAQAPEETENSMEKPDKDDDTEVPSLPL 165
Query: 52 GRIGEDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAK 111
G G + + T +++ T +K+ GF MT+IQ S+ L GRD+L AAK
Sbjct: 166 GLTGAFEDTSFASLTDL----VNENTLRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAK 221
Query: 112 TGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGL 171
TGSGKTLAF+IP +E + K R+ P +G G +I+SPTRELA Q F VLK + HH + GL
Sbjct: 222 TGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL 281
Query: 172 LIGG-RRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGF 230
++GG R + +K N +NI+V TPGRLL HM TP F LQ L++DEADRILDVGF
Sbjct: 282 IMGGSNRSAEAQKL-ANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGF 340
Query: 231 KKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLK-DPQYLSVHEESVTATPNRLQQT 289
++ L I+ LP RQT LFSATQT+ V+DLAR+SLK +P Y+ V ++ AT + L+Q
Sbjct: 341 EEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQG 400
Query: 290 AMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ 349
++ P E++ +L++F+K + K++VF +SCK VKY +E + +P++ ++GR KQ
Sbjct: 401 YVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYI--DLPVLAIHGRQKQ 458
Query: 350 DRRMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR-Y 407
++R + QFC S +L CTDVA+RGLD + VDW+VQ D P+D YIHRVGRTAR
Sbjct: 459 NKRTTTFFQFCNADSGILLCTDVAARGLDIPE-VDWIVQYDPPDDPKEYIHRVGRTARGL 517
Query: 408 NSGGRSVLFLTPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQ 467
N G ++L L P E+ L L+++K+P+ + + ++ + L L+ K + AQ
Sbjct: 518 NGRGHALLILRPEELGFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQ 577
Query: 468 KAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRF-LNQKKGKM 518
+A+ +Y+R+ K++F+V L++ + + S G + P + +N GK+
Sbjct: 578 EAYKSYIRAYDSHSLKQIFNVNNLNLPQVALSFGFKVPPFVDLNVNSNDGKV 629
>UNIPROTKB|E2RFA3 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K13179 OMA:KDGYRSY GeneTree:ENSGT00680000100037
CTD:8886 EMBL:AAEX03011884 RefSeq:XP_533327.3
Ensembl:ENSCAFT00000007958 GeneID:476120 KEGG:cfa:476120
Uniprot:E2RFA3
Length = 669
Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
Identities = 210/524 (40%), Positives = 315/524 (60%)
Query: 2 KKSKRKPNRKAVRSMEIEEIELLNSWIDSQKPESGTNPLSFPPLGKKEPIGRIGEDSFSK 61
KKSK + + + E E N+ +KP+ P L P+G G +F
Sbjct: 126 KKSKTEDKGDSEEGTQAPE-ETENN---GEKPDDEEEDSEVPSL----PLGLTG--AFE- 174
Query: 62 YVGSTRFDQLP--ISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLA 119
T F L +++ T +K+ GF MT+IQ S+ L GRD+L AAKTGSGKTLA
Sbjct: 175 ---DTSFASLSSLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLA 231
Query: 120 FVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGG-RRD 178
F+IP +E + K ++ P +G G +I+SPTRELA Q F VLK + +H + GL++GG R
Sbjct: 232 FLIPAVELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMMYHVHTYGLIMGGSNRS 291
Query: 179 VDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIV 238
+ +K N +NI+V TPGRLL HM TP F LQ L++DEADRILDVGF++ L I+
Sbjct: 292 AEAQKLG-NGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQII 350
Query: 239 SQLPKHRQTFLFSATQTKSVQDLARLSLK-DPQYLSVHEESVTATPNRLQQTAMIVPLEQ 297
LP RQT LFSATQT+ V+DLAR+SLK +P Y+ V ++ AT + L+Q ++ P E+
Sbjct: 351 KLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEK 410
Query: 298 KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYA 357
+ +L++F+K + K++VF +SCK VKY +E + +P++ ++GR KQ++R +
Sbjct: 411 RFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYI--DLPVLAIHGRQKQNKRTTTFF 468
Query: 358 QFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR-YNSGGRSVL 415
QFC S +L CTDVA+RGLD + VDW+VQ D P+D YIHRVGRTAR N G ++L
Sbjct: 469 QFCNADSGILLCTDVAARGLDIPE-VDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALL 527
Query: 416 FLTPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLR 475
L P E+ L L+++K+P+ + + ++ + L L+ K + AQ+A+ +Y+R
Sbjct: 528 ILHPEELGFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIR 587
Query: 476 SVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRF-LNQKKGKM 518
+ K++F+V L++ + + S G + P + +N GK+
Sbjct: 588 AYDSHSLKQIFNVNNLNLPQVALSFGFKVPPFVDLNVNSNDGKL 631
>UNIPROTKB|F1NEQ3 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:AADN02016926
IPI:IPI00598837 Ensembl:ENSGALT00000019841 Uniprot:F1NEQ3
Length = 659
Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
Identities = 201/478 (42%), Positives = 298/478 (62%)
Query: 50 PIGRIG--ED-SFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDI 106
P+G G ED SF+ G +S+ T G+ D GF MT+IQ S+ L GRDI
Sbjct: 154 PLGLTGAFEDNSFTSLAGL-------VSENTLKGISDMGFTHMTEIQHKSIKPLLEGRDI 206
Query: 107 LGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHN 166
L AAKTGSGKTLAF+IP +E +YK ++ P +G G II+SPTRELA Q + VLK + HH
Sbjct: 207 LAAAKTGSGKTLAFLIPAVELIYKLKFMPRNGTGVIILSPTRELAMQTYGVLKELMNHHV 266
Query: 167 FSAGLLIGG-RRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRI 225
+ GL++GG R + +K N +NI+V TPGRLL HM TP F LQ L++DEADRI
Sbjct: 267 HTYGLIMGGSNRSAEAQKLG-NGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRI 325
Query: 226 LDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLK-DPQYLSVHEESVTATPN 284
L+VGF++ + I+ LPK RQT LFSATQT+ V+DLA++SLK +P Y+ V + TAT +
Sbjct: 326 LEVGFEEEMKQIIKLLPKRRQTMLFSATQTRKVEDLAKISLKKEPLYVGVDDNKETATVD 385
Query: 285 RLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLY 344
L+Q ++ P E++ +L++F+K + K++VF +SC VKY +E + +P++ ++
Sbjct: 386 GLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYI--DLPVLAIH 443
Query: 345 GRMKQDRRMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVAS--YIHRV 401
G+ KQ +R + QFC S +L CTDVA+RGLD + VDW+VQ D P+D YIHRV
Sbjct: 444 GKQKQTKRTTTFFQFCNAESGILLCTDVAARGLDIPE-VDWIVQYDPPDDPKQKEYIHRV 502
Query: 402 GRTAR-YNSGGRSVLFLTPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYP 460
GRTAR N G ++L L P E+ L L++A++P+ + + ++ + L L+ K
Sbjct: 503 GRTARGINGRGHALLILRPEELGFLRYLKQARVPLSEFEFSWSKISDIQSQLEKLIEKNY 562
Query: 461 DMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRF-LNQKKGK 517
+ AQ+A+ Y+R+ K++++V L +++ S S G + P + +N +G+
Sbjct: 563 FLHKSAQEAYKAYIRAYDSHSLKQIYNVGNLDLNKVSLSFGFKVPPYVDLNVNSNQGR 620
>UNIPROTKB|Q9NVP1 [details] [associations]
symbol:DDX18 "ATP-dependent RNA helicase DDX18"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY EMBL:AK001467 EMBL:BC001238 EMBL:BC003360 EMBL:BC024739
EMBL:X98743 EMBL:CR457060 IPI:IPI00301323 PIR:S71758
RefSeq:NP_006764.3 UniGene:Hs.363492 PDB:3LY5 PDBsum:3LY5
ProteinModelPortal:Q9NVP1 SMR:Q9NVP1 IntAct:Q9NVP1
MINT:MINT-1382348 STRING:Q9NVP1 PhosphoSite:Q9NVP1 DMDM:20532388
SWISS-2DPAGE:Q9NVP1 PaxDb:Q9NVP1 PeptideAtlas:Q9NVP1 PRIDE:Q9NVP1
Ensembl:ENST00000263239 GeneID:8886 KEGG:hsa:8886 UCSC:uc002tlh.1
CTD:8886 GeneCards:GC02P118572 HGNC:HGNC:2741 HPA:HPA035400
MIM:606355 neXtProt:NX_Q9NVP1 PharmGKB:PA27207 HOVERGEN:HBG105702
InParanoid:Q9NVP1 OrthoDB:EOG4894MF PhylomeDB:Q9NVP1
ChEMBL:CHEMBL5060 ChiTaRS:DDX18 EvolutionaryTrace:Q9NVP1
GenomeRNAi:8886 NextBio:33369 ArrayExpress:Q9NVP1 Bgee:Q9NVP1
CleanEx:HS_DDX18 Genevestigator:Q9NVP1 GermOnline:ENSG00000088205
Uniprot:Q9NVP1
Length = 670
Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
Identities = 199/492 (40%), Positives = 300/492 (60%)
Query: 31 QKPESGTNPLSFPPLGKKEPIGRIGEDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMT 90
+KP++ + P L P+G G + + +++ T +K+ GF MT
Sbjct: 152 EKPDNDEDESEVPSL----PLGLTGAFEDTSFASLCNL----VNENTLKAIKEMGFTNMT 203
Query: 91 DIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTREL 150
+IQ S+ L GRD+L AAKTGSGKTLAF+IP +E + K R+ P +G G +I+SPTREL
Sbjct: 204 EIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTREL 263
Query: 151 ADQLFDVLKAVGKHHNFSAGLLIGG-RRDVDMEKEHVNELNILVCTPGRLLQHMDETPNF 209
A Q F VLK + HH + GL++GG R + +K N +NI+V TPGRLL HM TP F
Sbjct: 264 AMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLG-NGINIIVATPGRLLDHMQNTPGF 322
Query: 210 DCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLK-D 268
LQ L++DEADRILDVGF++ L I+ LP RQT LFSATQT+ V+DLAR+SLK +
Sbjct: 323 MYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKE 382
Query: 269 PQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVF 328
P Y+ V ++ AT + L+Q ++ P E++ +L++F+K + K++VF +SC VKY +
Sbjct: 383 PLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCMSVKYHY 442
Query: 329 EAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQ 387
E + +P++ ++G+ KQ++R + QFC S L CTDVA+RGLD + VDW+VQ
Sbjct: 443 ELLNYI--DLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARGLDIPE-VDWIVQ 499
Query: 388 VDCPEDVASYIHRVGRTAR-YNSGGRSVLFLTPTEMKMLEKLREAKIPIHFTKANTKRLQ 446
D P+D YIHRVGRTAR N G ++L L P E+ L L+++K+P+ + ++
Sbjct: 500 YDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEELGFLRYLKQSKVPLSEFDFSWSKIS 559
Query: 447 PVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTP 506
+ L L+ K + AQ+A+ +Y+R+ K++F+V L++ + + S G + P
Sbjct: 560 DIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSLKQIFNVNNLNLPQVALSFGFKVPP 619
Query: 507 KIRF-LNQKKGK 517
+ +N +GK
Sbjct: 620 FVDLNVNSNEGK 631
>MGI|MGI:1914192 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914192
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AK075864 EMBL:AK019845 EMBL:BC028246
EMBL:BC103776 IPI:IPI00459381 RefSeq:NP_080136.2 UniGene:Mm.44219
ProteinModelPortal:Q8K363 SMR:Q8K363 STRING:Q8K363
PhosphoSite:Q8K363 PaxDb:Q8K363 PRIDE:Q8K363
Ensembl:ENSMUST00000001724 GeneID:66942 KEGG:mmu:66942
InParanoid:Q8K363 NextBio:323084 Bgee:Q8K363 CleanEx:MM_DDX18
Genevestigator:Q8K363 GermOnline:ENSMUSG00000001674 Uniprot:Q8K363
Length = 660
Score = 927 (331.4 bits), Expect = 4.3e-93, P = 4.3e-93
Identities = 201/523 (38%), Positives = 315/523 (60%)
Query: 3 KSKRKPNRKAVRSM--EIEEIELLNSWIDSQKPESGTNPLSFPPLGKKEPIGRIGEDSFS 60
K K+K RK + ++ + S ++PE + P+G G +
Sbjct: 109 KKKKKKKRKMANDAGPDTKKAKTEESAEACEEPEDDVKKADDSEVPSL-PLGLTGAFEDT 167
Query: 61 KYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAF 120
+ + +++ T +++ GF +MT+IQ S+ L GRD+L AAKTGSGKTLAF
Sbjct: 168 SFASLSNL----VNENTLKAIEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF 223
Query: 121 VIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGG-RRDV 179
+IPV+E + K ++ P +G G +I+SPTRELA Q F VLK + HH + GL++GG R
Sbjct: 224 LIPVIELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSA 283
Query: 180 DMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVS 239
+++K +N +NI+V TPGRLL HM TP F LQ L++DEADRILDVGF++ L I+
Sbjct: 284 EVQKL-LNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIK 342
Query: 240 QLPKHRQTFLFSATQTKSVQDLARLSLK-DPQYLSVHEESVTATPNRLQQTAMIVPLEQK 298
LP RQT LFSATQT+ V+DLAR+SLK +P Y+ V ++ AT + L+Q ++ P E++
Sbjct: 343 LLPARRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKR 402
Query: 299 LDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQ 358
+L++F+K + K++VF +SC VKY +E + +P++ ++G+ KQ++R + Q
Sbjct: 403 FLLLFTFLKKNRKKKVMVFFSSCMSVKYHYELLNYI--DLPVLAIHGKQKQNKRTTTFFQ 460
Query: 359 FCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR-YNSGGRSVLF 416
FC S +L CTDVA+RGLD + VDW+VQ D P+D YIHRVGRTAR N G ++L
Sbjct: 461 FCNADSGILLCTDVAARGLDIPE-VDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLI 519
Query: 417 LTPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRS 476
L P E+ L L+++K+P++ + ++ + L L+ K + AQ+A+ +Y+R+
Sbjct: 520 LRPEELGFLRYLKQSKVPLNQFDFSWSKVSDIQSQLEKLIEKNYFLHKSAQEAYKSYIRA 579
Query: 477 VHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRF-LNQKKGKM 518
K++F+V L++ + + S G + P + ++ GK+
Sbjct: 580 YDSHSLKQIFNVNNLNLPQVALSFGFKVPPFVDLNVSSHDGKL 622
>UNIPROTKB|D4A824 [details] [associations]
symbol:Ddx18 "Protein Ddx18" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1549712 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
EMBL:AC128353 IPI:IPI00393022 Ensembl:ENSRNOT00000028172
ArrayExpress:D4A824 Uniprot:D4A824
Length = 662
Score = 924 (330.3 bits), Expect = 9.0e-93, P = 9.0e-93
Identities = 202/522 (38%), Positives = 312/522 (59%)
Query: 2 KKSKRKPNRKAVRSMEIEEIELLNSWIDSQKPESGTNPLSFPPLGKKEPIGRIGEDSFSK 61
KK KRK + + E ++PE G + P+G G +
Sbjct: 112 KKKKRKIGNDTEPDPKKAKTEEGTEARAGEEPEDGVKEADDSEVPSL-PLGVTGAFEDTS 170
Query: 62 YVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFV 121
+ + +++ T +++ GF MT+IQ S+ L GRD+L AAKTGSGKTLAF+
Sbjct: 171 FASLSNL----VNENTLKAIEEMGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFL 226
Query: 122 IPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGG-RRDVD 180
IPV+E + K ++ P +G G +I+SPTRELA Q F VLK + HH + GL++GG R +
Sbjct: 227 IPVIELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAE 286
Query: 181 MEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ 240
++K +N +NI+V TPGRLL HM TP F LQ L++DEADRILDVGF++ L I+
Sbjct: 287 VQKL-LNGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKL 345
Query: 241 LPKHRQTFLFSATQTKSVQDLARLSLK-DPQYLSVHEESVTATPNRLQQTAMIVPLEQKL 299
LP RQT LFSATQT+ V+DLAR+SLK +P Y+ V ++ AT + L+Q ++ P E++
Sbjct: 346 LPARRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRF 405
Query: 300 DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF 359
+L++F+K + K++VF +SC VKY +E + +P++ ++G+ KQ++R + QF
Sbjct: 406 LLLFTFLKKNRKKKVMVFFSSCMSVKYHYELLNYI--DLPVLAIHGKQKQNKRTTTFFQF 463
Query: 360 CEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR-YNSGGRSVLFL 417
C S +L CTDVA+RGLD + VDW+VQ D P+D YIHRVGRTAR N G ++L L
Sbjct: 464 CNADSGILLCTDVAARGLDIPE-VDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLIL 522
Query: 418 TPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSV 477
P E+ L L+++K+P++ + ++ + L L+ K + AQ+A+ +Y+R+
Sbjct: 523 RPEELGFLRYLKQSKVPLNQFDFSWSKVSDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAY 582
Query: 478 HIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRF-LNQKKGKM 518
K++F+V L++ + + S G + P + ++ GK+
Sbjct: 583 DSHSLKQIFNVNNLNLPQVALSFGFKVPPFVDLNVSSHDGKL 624
>RGD|1549712 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1549712 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AC128353 EMBL:BC083919 IPI:IPI00367078
RefSeq:NP_001006997.1 UniGene:Rn.26598 STRING:Q5XHY0
Ensembl:ENSRNOT00000037203 GeneID:308490 KEGG:rno:308490
UCSC:RGD:1549712 InParanoid:Q5XHY0 NextBio:658990
Genevestigator:Q5XHY0 Uniprot:Q5XHY0
Length = 674
Score = 922 (329.6 bits), Expect = 1.5e-92, P = 1.5e-92
Identities = 190/451 (42%), Positives = 291/451 (64%)
Query: 73 ISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKER 132
+++ T +++ GF MT+IQ S+ L GRD+L AAKTGSGKTLAF+IPV+E + K +
Sbjct: 190 VNENTLKAIEEMGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKLK 249
Query: 133 WGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGG-RRDVDMEKEHVNELNI 191
+ P +G G +I+SPTRELA Q F VLK + HH + GL++GG R +++K +N +NI
Sbjct: 250 FMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKL-LNGINI 308
Query: 192 LVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 251
+V TPGRLL HM TP F LQ L++DEADRILDVGF++ L I+ LP RQT LFS
Sbjct: 309 VVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARRQTMLFS 368
Query: 252 ATQTKSVQDLARLSLK-DPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHL 310
ATQT+ V+DLAR+SLK +P Y+ V ++ AT + L+Q ++ P E++ +L++F+K +
Sbjct: 369 ATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFLLLFTFLKKNR 428
Query: 311 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS-VLFCT 369
K++VF +SC VKY +E + +P++ ++G+ KQ++R + QFC S +L CT
Sbjct: 429 KKKVMVFFSSCMSVKYHYELLNYI--DLPVLAIHGKQKQNKRTTTFFQFCNADSGILLCT 486
Query: 370 DVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR-YNSGGRSVLFLTPTEMKMLEKL 428
DVA+RGLD + VDW+VQ D P+D YIHRVGRTAR N G ++L L P E+ L L
Sbjct: 487 DVAARGLDIPE-VDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEELGFLRYL 545
Query: 429 REAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDV 488
+++K+P++ + ++ + L L+ K + AQ+A+ +Y+R+ K++F+V
Sbjct: 546 KQSKVPLNQFDFSWSKVSDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSLKQIFNV 605
Query: 489 TKLSIDEFSASLGLPMTPKIRF-LNQKKGKM 518
L++ + + S G + P + ++ GK+
Sbjct: 606 NNLNLPQVALSFGFKVPPFVDLNVSSHDGKL 636
>ZFIN|ZDB-GENE-030131-9685 [details] [associations]
symbol:ddx18 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 18" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0030099 "myeloid
cell differentiation" evidence=IMP] [GO:0030097 "hemopoiesis"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-9685
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0030099 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K13179 CTD:8886
HOVERGEN:HBG105702 EMBL:AY648748 IPI:IPI00492099
RefSeq:NP_001003411.1 UniGene:Dr.24235 ProteinModelPortal:Q6DRL1
STRING:Q6DRL1 PRIDE:Q6DRL1 GeneID:321127 KEGG:dre:321127
InParanoid:Q6DRL1 NextBio:20807243 ArrayExpress:Q6DRL1 Bgee:Q6DRL1
Uniprot:Q6DRL1
Length = 653
Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
Identities = 205/505 (40%), Positives = 304/505 (60%)
Query: 29 DSQKPESGTNPLSFPPLGKKEPIGRIGEDSF-------SKYVGSTR---FDQLP--ISKK 76
+ Q+ E + P G E G EDS S G+ F L +S+
Sbjct: 112 EEQQEEGNLETVKCPENGNNEKEGSAEEDSDEDGPQLPSGLTGAFEDRSFASLSEVVSEN 171
Query: 77 TKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPE 136
T G+K+ GF MT+IQ ++ L GRD+L AAKTGSGKTLAF+IP +E +YK ++ P
Sbjct: 172 TLKGVKEMGFDTMTEIQHKTIRPLLEGRDVLAAAKTGSGKTLAFLIPSIELIYKLKFMPR 231
Query: 137 DGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGG-RRDVDMEKEHVNELNILVCT 195
+G G I++SPTRELA Q + VLK + HH + GL++GG R + +K N +NILV T
Sbjct: 232 NGTGVIVLSPTRELAMQTYGVLKELMTHHVHTYGLIMGGSNRSAEAQKL-ANGVNILVAT 290
Query: 196 PGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQT 255
PGRLL H+ TP F LQ LI+DEADRIL+VGF++ L I+ LPK RQ+ LFSATQT
Sbjct: 291 PGRLLDHLQNTPGFMFKNLQCLIIDEADRILEVGFEEELKQIIKLLPKKRQSMLFSATQT 350
Query: 256 KSVQDLARLSLK-DPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKI 314
+ V+DLAR+SLK +P Y+ V + TAT L+Q ++ P E++ +L++F+K + K+
Sbjct: 351 RKVEDLARISLKKEPLYVGVDDNKDTATVEGLEQGYVVCPSEKRFLLLFTFLKKNRKKKL 410
Query: 315 LVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS-VLFCTDVAS 373
+VF +SC VK+ +E + +P+M ++G+ KQ +R + QFC S +L CTDVA+
Sbjct: 411 MVFFSSCMSVKFHYELLNYI--DLPVMAIHGKQKQTKRTTTFFQFCNADSGILLCTDVAA 468
Query: 374 RGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR-YNSGGRSVLFLTPTEMKMLEKLREAK 432
RGLD + VDW+VQ D P+D YIHRVGRTAR N G ++L L P E+ L L++AK
Sbjct: 469 RGLDIPE-VDWIVQFDPPDDPKEYIHRVGRTARGINGRGHALLILRPEELGFLRFLKQAK 527
Query: 433 IPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLS 492
+P+ + + ++ + L L+ K + AQ+A+ +Y+R+ K++++V L
Sbjct: 528 VPLSEFEFSWTKISDIQSQLDKLIEKNYYLHKSAQEAYKSYVRAYDSHSLKQIYNVETLD 587
Query: 493 IDEFSASLGLPMTPKIRF-LNQKKG 516
+ + + S G + P + ++ KG
Sbjct: 588 LPKVAMSFGFKVPPFVDLNVHSSKG 612
>POMBASE|SPAC1F7.02c [details] [associations]
symbol:has1 "ATP-dependent RNA helicase Has1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1F7.02c GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY OrthoDB:EOG4ZKNVS PIR:S62574 RefSeq:NP_594488.1
ProteinModelPortal:Q09916 STRING:Q09916 EnsemblFungi:SPAC1F7.02c.1
GeneID:2541668 KEGG:spo:SPAC1F7.02c NextBio:20802761 Uniprot:Q09916
Length = 578
Score = 909 (325.0 bits), Expect = 3.5e-91, P = 3.5e-91
Identities = 192/456 (42%), Positives = 290/456 (63%)
Query: 67 RFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLE 126
+F L +S+ + +K+ GF MT+IQ+ S+P L GRD+LGAAKTGSGKTLAF+IP +E
Sbjct: 90 KFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIE 149
Query: 127 KLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGG-RRDVDMEKEH 185
LY ++ P +G G IIISPTRELA Q+F V K + K+H+ + G++IGG R + +K
Sbjct: 150 MLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKL- 208
Query: 186 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP-KH 244
V +N+LV TPGRLL H+ T F L+ L++DEADRIL++GF+ + I+ LP ++
Sbjct: 209 VKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSEN 268
Query: 245 RQTFLFSATQTKSVQDLARLSLKD-PQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLW 303
RQT LFSATQT V+DLAR+SLK P Y++V T+T L+Q ++V +++ +L+
Sbjct: 269 RQTLLFSATQTTKVEDLARISLKPGPLYVNVDSGKPTSTVEGLEQGYVVVDSDKRFLLLF 328
Query: 304 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K 362
SF+K +L K++VF++SC VKY+ E + +P++ L+G+ KQ RR + +FC +
Sbjct: 329 SFLKRNLKKKVIVFMSSCASVKYMAELLNYI--DLPVLDLHGKQKQQRRTNTFFEFCNAE 386
Query: 363 RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSG-GRSVLFLTPTE 421
+ +L CT+VA+RGLD AVDW+VQ D P+D YIHRVGRTAR G G+S++FL P+E
Sbjct: 387 KGILLCTNVAARGLDI-PAVDWIVQYDPPDDPRDYIHRVGRTARGTKGTGKSLMFLAPSE 445
Query: 422 MKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQK 481
+ L L+ AK+ ++ + ++ V L L+ K +Q A+ + +YL++
Sbjct: 446 LGFLRYLKTAKVSLNEFEFPANKVANVQSQLEKLVSKNYYLQQSAKDGYRSYLQAYASYS 505
Query: 482 DKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGK 517
K +FD+ KL + + + S G P + G+
Sbjct: 506 LKSIFDINKLDLAKVAKSFGFAHPPNVNITIGASGR 541
>ASPGD|ASPL0000044206 [details] [associations]
symbol:AN1949 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005635 "nuclear envelope" evidence=IEA] [GO:0030687
"preribosome, large subunit precursor" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 EMBL:BN001307
GO:GO:0003723 EMBL:AACD01000029 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_659553.1
ProteinModelPortal:Q5BBY1 STRING:Q5BBY1
EnsemblFungi:CADANIAT00008609 GeneID:2875602 KEGG:ani:AN1949.2
OrthoDB:EOG4ZKNVS Uniprot:Q5BBY1
Length = 609
Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
Identities = 194/450 (43%), Positives = 286/450 (63%)
Query: 64 GSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIP 123
G +F +L +S+KT G+K+ GF MT+IQ+ ++P L GRD+LGAAKTGSGKTLAF+IP
Sbjct: 126 GPKKFTELGLSEKTLQGIKEMGFETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLAFLIP 185
Query: 124 VLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGG-RRDVDME 182
+E L R+ P +G G I++SPTRELA Q+F V + + H+ + G++IGG R + E
Sbjct: 186 AIEMLSALRFKPRNGTGVIVVSPTRELALQIFGVARELLTAHSQTYGIVIGGANRRAEAE 245
Query: 183 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP 242
K +N+L+ TPGRLL H+ TP F L+ L++DEADRIL+VGF+ + I+ LP
Sbjct: 246 KL-TKGVNLLIATPGRLLDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIIKILP 304
Query: 243 KH-RQTFLFSATQTKSVQDLARLSLKD-PQYLSVHEESVTATPNRLQQTAMIVPLEQKLD 300
RQT LFSATQT V+DLAR+SL+ P Y++V +T L+Q +I +++
Sbjct: 305 NEDRQTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICEADKRFL 364
Query: 301 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFC 360
+L+SF+K +L KI+VF +SC VKY E + +P++ L+G+ KQ +R + +FC
Sbjct: 365 LLFSFLKRNLKKKIIVFFSSCNCVKYHAELLNYI--DLPVLDLHGKQKQQKRTNTFFEFC 422
Query: 361 E-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSG-GRSVLFLT 418
K+ VL CTDVA+RGLD AVDW++Q D P+D YIHRVGRTAR +G GRS++FL
Sbjct: 423 NAKQGVLICTDVAARGLDI-PAVDWIIQFDPPDDTRDYIHRVGRTARGANGRGRSLMFLQ 481
Query: 419 PTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVH 478
P+E+ L+ L+EA++P+ K++ V L L+ + + A+ + +YL++
Sbjct: 482 PSEVGFLKYLKEARVPVVEFDFPAKKIVNVQSQLEKLISQNYYLNKSAKDGYRSYLQAYA 541
Query: 479 IQKDKEVFDVTKLSIDEFSASLGLPMTPKI 508
+ VFDV KL + + + S G P+I
Sbjct: 542 SHSLRSVFDVHKLDLVKVAKSFGFSTPPRI 571
>FB|FBgn0025140 [details] [associations]
symbol:pit "pitchoune" species:7227 "Drosophila melanogaster"
[GO:0005730 "nucleolus" evidence=NAS;IDA] [GO:0016049 "cell growth"
evidence=IMP] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K13179 OMA:KDGYRSY EMBL:U84552 EMBL:AY071402
EMBL:AY119620 RefSeq:NP_524446.3 RefSeq:NP_732694.2
UniGene:Dm.33428 ProteinModelPortal:Q9VD51 SMR:Q9VD51
DIP:DIP-19700N MINT:MINT-1004790 STRING:Q9VD51 PaxDb:Q9VD51
EnsemblMetazoa:FBtr0084174 EnsemblMetazoa:FBtr0084175 GeneID:42595
KEGG:dme:Dmel_CG6375 UCSC:CG6375-RA CTD:42595 FlyBase:FBgn0025140
GeneTree:ENSGT00680000100037 InParanoid:Q9VD51 OrthoDB:EOG4H189W
PhylomeDB:Q9VD51 ChiTaRS:pit GenomeRNAi:42595 NextBio:829597
Bgee:Q9VD51 GermOnline:CG6375 Uniprot:Q9VD51
Length = 680
Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
Identities = 189/440 (42%), Positives = 287/440 (65%)
Query: 73 ISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKER 132
+S+ T +K+ GF +MT+IQ SL L GRD++GAA+TGSGKTLAF+IP +E + K R
Sbjct: 194 VSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELINKLR 253
Query: 133 WGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGG-RRDVDMEKEHVNELNI 191
+ P +G G IIISPTREL+ Q F VLK + HH+ + GL++GG R V+ EK +NI
Sbjct: 254 FMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKG-INI 312
Query: 192 LVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 251
LV TPGRLL H+ +P+F LQ LI+DE DRIL++GF++ L I++ LPK RQT LFS
Sbjct: 313 LVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLFS 372
Query: 252 ATQTKSVQDLARLSLK-DPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHL 310
ATQT ++ L++L+LK +P Y+ VH+ TAT + L+Q ++ P E++L +L++F+K +
Sbjct: 373 ATQTARIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLFTFLKKNR 432
Query: 311 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS-VLFCT 369
K++VF +SC VKY E F + +P+ ++G+ KQ +R + QFC S +L CT
Sbjct: 433 KKKVMVFFSSCMSVKYHHELFNYI--DLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCT 490
Query: 370 DVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYN-SGGRSVLFLTPTEMKMLEKL 428
DVA+RGLD + VDW+VQ D P+D YIHRVGRTAR + + G ++L + P E+ L L
Sbjct: 491 DVAARGLDIPQ-VDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPEELGFLRYL 549
Query: 429 REAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDV 488
+ AK+P++ + + +++ + L L+ K + A++AF +Y+R+ + K++F+V
Sbjct: 550 KAAKVPLNEFEFSWQKIADIQLQLEKLIAKNYFLNQSAKEAFKSYVRAYDSHQLKQIFNV 609
Query: 489 TKLSIDEFSASLGLPMTPKI 508
L + + S G + P +
Sbjct: 610 NTLDLQAVAKSFGFLVPPVV 629
>DICTYBASE|DDB_G0282741 [details] [associations]
symbol:ddx18 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282741 GO:GO:0005524
GO:GO:0005730 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 InterPro:IPR025313 Pfam:PF13959
RefSeq:XP_640236.1 ProteinModelPortal:Q54S03 STRING:Q54S03
EnsemblProtists:DDB0234194 GeneID:8623775 KEGG:ddi:DDB_G0282741
KO:K13179 OMA:KDGYRSY Uniprot:Q54S03
Length = 602
Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
Identities = 190/469 (40%), Positives = 287/469 (61%)
Query: 52 GRIGEDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAK 111
G + E S F LPI + TK +++ GF KMT IQ S+ L G+D+LGAA+
Sbjct: 105 GNVSEKELGISKESIEFSNLPIEENTKKSIEEMGFKKMTPIQAKSILPLLEGKDLLGAAR 164
Query: 112 TGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGL 171
TGSGKTLAF+IP +E L K + P +G G IIISPTRELA Q++ V + + K+H + G+
Sbjct: 165 TGSGKTLAFLIPAIEVLVKSNFKPRNGTGVIIISPTRELALQIYGVARELMKYHTQTHGI 224
Query: 172 LIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFK 231
+IGG E+ +N+LV TPGRLL H+ T F L+ LI+DEADRIL+VGF+
Sbjct: 225 VIGGASKKPEEERLEKGVNLLVATPGRLLDHLQNTKGFITKNLKCLIIDEADRILEVGFE 284
Query: 232 KALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKD-PQYLSVHEESVTATPNRLQQTA 290
+ ++ I+ ++PK RQT LFSATQT+ V D+A++SL + P Y+ V +E +T L+Q
Sbjct: 285 EEMHQIIKKVPKTRQTMLFSATQTRKVDDIAKVSLNNSPVYVGVDDEREISTVEGLEQGY 344
Query: 291 MIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQD 350
++ P E++ +L++F+K +L+ KI+VFL+SC VKY E + IP++ L+GR KQ
Sbjct: 345 VVCPSERRFLLLYTFLKKNLSKKIIVFLSSCNAVKYTAELLNYI--DIPVLELHGRQKQQ 402
Query: 351 RRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR-YN 408
+R + +F ++ +L CTDVA+RGLD +VDW++Q D P+D YIHRVGRTAR
Sbjct: 403 KRTNTFYEFVNAEKGILICTDVAARGLDI-PSVDWIIQYDPPDDPKEYIHRVGRTARGVG 461
Query: 409 SGGRSVLFLTPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQK 468
GR++LFL P E+ L+ L+ AK+P++ + ++ V L ++ + + + A+
Sbjct: 462 KKGRALLFLLPKELGFLKYLKLAKVPLNEYEFPKSKIANVQDQLEKVVSQNFYLYNSARD 521
Query: 469 AFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGK 517
A+ Y+ + K++FDV L + + + G PK+ GK
Sbjct: 522 AYKAYICAYASHSLKDIFDVNALDLQCVAKAFGFLDPPKVNLNVNSSGK 570
>CGD|CAL0003050 [details] [associations]
symbol:HAS1 species:5476 "Candida albicans" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IGI;ISS] [GO:0042274
"ribosomal small subunit biogenesis" evidence=IGI;ISS] [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 GO:GO:0042274
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000012
InterPro:IPR025313 Pfam:PF13959 KO:K13179 EMBL:AACQ01000011
RefSeq:XP_721871.1 RefSeq:XP_722031.1 STRING:Q5AK59 GeneID:3636361
GeneID:3636443 KEGG:cal:CaO19.11444 KEGG:cal:CaO19.3962
Uniprot:Q5AK59
Length = 565
Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
Identities = 190/481 (39%), Positives = 292/481 (60%)
Query: 32 KPESGTNPLSFPPLGKKEPIGRIGEDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTD 91
K E+ L+ P + + P +DS + F+ S+ T +K+ GF KMT
Sbjct: 78 KDEAKLEQLTKPQVSNEVPDNDNDDDSSEDVL----FENADFSEPTMKAIKEMGFTKMTK 133
Query: 92 IQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELA 151
+Q ++P L GRD+LGAAKTGSGKTLAF+IP +E LY + P +G III+PTRELA
Sbjct: 134 VQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLYSLKIKPRNGTAVIIITPTRELA 193
Query: 152 DQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDC 211
Q+F V + + + H+ + G++IGG + +N+LV TPGRLL H+ T F
Sbjct: 194 LQIFGVARELMQFHSQTCGIVIGGADRRQEATKLAKGVNLLVATPGRLLDHLKNT-QFVF 252
Query: 212 SQLQILILDEADRILDVGFKKALNAIVSQLP-KHRQTFLFSATQTKSVQDLARLSLKD-P 269
S L+ L++DEADRIL++GF+ + I+ LP ++RQ+ LFSATQT V+DLAR+SL+ P
Sbjct: 253 SNLKALVIDEADRILEIGFEDEMKQIIKVLPNENRQSMLFSATQTTKVEDLARISLRPGP 312
Query: 270 QYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFE 329
Y++V E +T + L+Q ++ +++ +L+SF+K ++ KI+VFL+SC VK+ E
Sbjct: 313 LYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLFSFLKRNVKKKIIVFLSSCNSVKFYSE 372
Query: 330 AFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQV 388
+ +P++ L+G+ KQ +R + +FC K+ +L CTDVA+RGLD AVDW+VQ
Sbjct: 373 LLNYI--DLPVLDLHGKQKQQKRTNTFFEFCNAKQGILVCTDVAARGLDI-PAVDWIVQF 429
Query: 389 DCPEDVASYIHRVGRTARYNSG-GRSVLFLTPTEMKMLEKLREAKIPIHFTKANTKRLQP 447
D P+D YIHRVGRTAR G G+S++FLTP+E+ L L+ AK+P++ + ++
Sbjct: 430 DPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSELGFLRYLKAAKVPLNEYEFPANKIAN 489
Query: 448 VSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPK 507
+ L L+ + A+ + YL++ K V+ + KL + + SAS GL P+
Sbjct: 490 IQSQLTKLIKTNYLLNQSAKDGYRAYLQAYASHGLKTVYQIDKLDLKKVSASFGLDQVPR 549
Query: 508 I 508
+
Sbjct: 550 V 550
>UNIPROTKB|Q5AK59 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase HAS1"
species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IGI] [GO:0042274 "ribosomal small
subunit biogenesis" evidence=IGI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0042274 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACQ01000012 InterPro:IPR025313 Pfam:PF13959 KO:K13179
EMBL:AACQ01000011 RefSeq:XP_721871.1 RefSeq:XP_722031.1
STRING:Q5AK59 GeneID:3636361 GeneID:3636443 KEGG:cal:CaO19.11444
KEGG:cal:CaO19.3962 Uniprot:Q5AK59
Length = 565
Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
Identities = 190/481 (39%), Positives = 292/481 (60%)
Query: 32 KPESGTNPLSFPPLGKKEPIGRIGEDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTD 91
K E+ L+ P + + P +DS + F+ S+ T +K+ GF KMT
Sbjct: 78 KDEAKLEQLTKPQVSNEVPDNDNDDDSSEDVL----FENADFSEPTMKAIKEMGFTKMTK 133
Query: 92 IQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELA 151
+Q ++P L GRD+LGAAKTGSGKTLAF+IP +E LY + P +G III+PTRELA
Sbjct: 134 VQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLYSLKIKPRNGTAVIIITPTRELA 193
Query: 152 DQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDC 211
Q+F V + + + H+ + G++IGG + +N+LV TPGRLL H+ T F
Sbjct: 194 LQIFGVARELMQFHSQTCGIVIGGADRRQEATKLAKGVNLLVATPGRLLDHLKNT-QFVF 252
Query: 212 SQLQILILDEADRILDVGFKKALNAIVSQLP-KHRQTFLFSATQTKSVQDLARLSLKD-P 269
S L+ L++DEADRIL++GF+ + I+ LP ++RQ+ LFSATQT V+DLAR+SL+ P
Sbjct: 253 SNLKALVIDEADRILEIGFEDEMKQIIKVLPNENRQSMLFSATQTTKVEDLARISLRPGP 312
Query: 270 QYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFE 329
Y++V E +T + L+Q ++ +++ +L+SF+K ++ KI+VFL+SC VK+ E
Sbjct: 313 LYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLFSFLKRNVKKKIIVFLSSCNSVKFYSE 372
Query: 330 AFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQV 388
+ +P++ L+G+ KQ +R + +FC K+ +L CTDVA+RGLD AVDW+VQ
Sbjct: 373 LLNYI--DLPVLDLHGKQKQQKRTNTFFEFCNAKQGILVCTDVAARGLDI-PAVDWIVQF 429
Query: 389 DCPEDVASYIHRVGRTARYNSG-GRSVLFLTPTEMKMLEKLREAKIPIHFTKANTKRLQP 447
D P+D YIHRVGRTAR G G+S++FLTP+E+ L L+ AK+P++ + ++
Sbjct: 430 DPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSELGFLRYLKAAKVPLNEYEFPANKIAN 489
Query: 448 VSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPK 507
+ L L+ + A+ + YL++ K V+ + KL + + SAS GL P+
Sbjct: 490 IQSQLTKLIKTNYLLNQSAKDGYRAYLQAYASHGLKTVYQIDKLDLKKVSASFGLDQVPR 549
Query: 508 I 508
+
Sbjct: 550 V 550
>SGD|S000004903 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0008186 "RNA-dependent ATPase
activity" evidence=IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA;IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004903 GO:GO:0005524
GO:GO:0005635 GO:GO:0005730 GO:GO:0003723 EMBL:BK006946
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030686 GO:GO:0006364 GO:GO:0004004 EMBL:X80836
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 OrthoDB:EOG4ZKNVS
PIR:S47451 RefSeq:NP_014017.1 ProteinModelPortal:Q03532 SMR:Q03532
DIP:DIP-4396N IntAct:Q03532 MINT:MINT-482816 STRING:Q03532
PaxDb:Q03532 PeptideAtlas:Q03532 EnsemblFungi:YMR290C GeneID:855335
KEGG:sce:YMR290C CYGD:YMR290c NextBio:979064 Genevestigator:Q03532
GermOnline:YMR290C Uniprot:Q03532
Length = 505
Score = 876 (313.4 bits), Expect = 1.1e-87, P = 1.1e-87
Identities = 183/456 (40%), Positives = 286/456 (62%)
Query: 67 RFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLE 126
+F++L +S+ T ++ GF MT +Q ++P L GRD+LGAAKTGSGKTLAF+IP +E
Sbjct: 43 KFEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE 102
Query: 127 KLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGG-RRDVDMEKEH 185
L+ ++ P +G G I+I+PTRELA Q+F V + + + H+ + G++IGG R + EK
Sbjct: 103 LLHSLKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKL- 161
Query: 186 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKH- 244
+ +N+L+ TPGRLL H+ T F L+ LI+DEADRIL++GF+ + I+ LP
Sbjct: 162 MKGVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILPNED 221
Query: 245 RQTFLFSATQTKSVQDLARLSLKD-PQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLW 303
RQ+ LFSATQT V+DLAR+SL+ P +++V E+ +T + L+Q ++ +++ +L+
Sbjct: 222 RQSMLFSATQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVVCDSDKRFLLLF 281
Query: 304 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K 362
SF+K + KI+VFL+SC VKY E + +P++ L+G+ KQ +R + +FC +
Sbjct: 282 SFLKRNQKKKIIVFLSSCNSVKYYAELLNYI--DLPVLELHGKQKQQKRTNTFFEFCNAE 339
Query: 363 RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSG-GRSVLFLTPTE 421
R +L CTDVA+RGLD AVDW++Q D P+D YIHRVGRTAR G G+S++FLTP E
Sbjct: 340 RGILICTDVAARGLDI-PAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPNE 398
Query: 422 MKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQK 481
+ L L+ +K+P++ + ++ V L L+ + A+ + +YL++
Sbjct: 399 LGFLRYLKASKVPLNEYEFPENKIANVQSQLEKLIKSNYYLHQTAKDGYRSYLQAYASHS 458
Query: 482 DKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGK 517
K V+ + KL + + + S G P+ PK+ GK
Sbjct: 459 LKTVYQIDKLDLAKVAKSYGFPVPPKVNITIGASGK 494
>TAIR|locus:2152099 [details] [associations]
symbol:AT5G65900 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
EMBL:AL021684 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 EMBL:AB018108 EMBL:AY059930
EMBL:BT001188 EMBL:AJ012745 IPI:IPI00526354 PIR:T05883 PIR:T51352
RefSeq:NP_201391.1 UniGene:At.19658 UniGene:At.66704
ProteinModelPortal:Q9SB89 SMR:Q9SB89 PaxDb:Q9SB89 PRIDE:Q9SB89
EnsemblPlants:AT5G65900.1 GeneID:836719 KEGG:ath:AT5G65900
GeneFarm:951 TAIR:At5g65900 InParanoid:Q9SB89 OMA:HLENTNG
PhylomeDB:Q9SB89 ProtClustDB:CLSN2916378 Genevestigator:Q9SB89
GermOnline:AT5G65900 Uniprot:Q9SB89
Length = 633
Score = 838 (300.0 bits), Expect = 1.2e-85, Sum P(2) = 1.2e-85
Identities = 181/460 (39%), Positives = 277/460 (60%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F+ L +S T +K+ GF +MT IQ ++P + G D+LGAA+TGSGKTLAF+IP +E
Sbjct: 156 FESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVEL 215
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
LY+ ++ P +G G ++I PTRELA Q + V K + K+H+ + G +IGG + +
Sbjct: 216 LYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEILAK 275
Query: 188 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQT 247
+N+LV TPGRLL H++ T F L+ L++DEADRIL+ F++ L I++ LPK RQT
Sbjct: 276 GVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQT 335
Query: 248 FLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIK 307
LFSATQ+ V+DLAR+SL P Y+ V E T L+Q +VP +L L +F+K
Sbjct: 336 SLFSATQSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAMRLLFLLTFLK 395
Query: 308 AHLNSK-ILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS-V 365
K I+VF ++CK K+ E F+ ++ + + G + Q++R + QF + + +
Sbjct: 396 RFQGKKKIMVFFSTCKSTKFHAELFRYIK--FDCLEIRGGIDQNKRTPTFLQFIKAETGI 453
Query: 366 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSG-GRSVLFLTPTEMKM 424
L CT+VA+RGLDF VDW+VQ D P++ YIHRVGRTAR G+++L LTP E+K
Sbjct: 454 LLCTNVAARGLDFPH-VDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLVLTPQELKF 512
Query: 425 LEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKE 484
++ L+ AKIP+ + K+L V + L+ + ++ A++A+ TY+ K+
Sbjct: 513 IQYLKAAKIPVEEHEFEEKKLLDVKPFVENLISENYALKESAKEAYKTYISGYDSHSMKD 572
Query: 485 VFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPV 524
VF+V +L++ E + S G PK+ + G +PV
Sbjct: 573 VFNVHQLNLTEVATSFGFSDPPKVALKIDRGGYRSKREPV 612
Score = 38 (18.4 bits), Expect = 1.2e-85, Sum P(2) = 1.2e-85
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 2 KKSKRKPNRKAVRSMEIEEIE 22
KK K+K + E EE+E
Sbjct: 117 KKKKKKQRKDTEAKSEEEEVE 137
>TAIR|locus:2086909 [details] [associations]
symbol:AT3G18600 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
[GO:0001510 "RNA methylation" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0034968
"histone lysine methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AP001303 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY EMBL:AY070052 EMBL:AY096431 IPI:IPI00544206
RefSeq:NP_188490.1 UniGene:At.28418 ProteinModelPortal:Q9LIH9
SMR:Q9LIH9 STRING:Q9LIH9 PaxDb:Q9LIH9 PRIDE:Q9LIH9 DNASU:821391
EnsemblPlants:AT3G18600.1 GeneID:821391 KEGG:ath:AT3G18600
GeneFarm:1030 TAIR:At3g18600 InParanoid:Q9LIH9 PhylomeDB:Q9LIH9
ProtClustDB:CLSN2914752 Genevestigator:Q9LIH9 GermOnline:AT3G18600
Uniprot:Q9LIH9
Length = 568
Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
Identities = 184/451 (40%), Positives = 276/451 (61%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
FD L +S++T +K+ GF MT IQ S+ L G+D+LGAA+TGSGKTLAF+IP +E
Sbjct: 91 FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVEL 150
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
L+KER+ P +G G I+I PTRELA Q +V + + KHH+ + ++IGG + +
Sbjct: 151 LFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIAS 210
Query: 188 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQT 247
N+++ TPGRLL H+ T F L+ L++DEADRIL+ F++ +N I+ LPK RQT
Sbjct: 211 GSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKTRQT 270
Query: 248 FLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIK 307
LFSATQT V+DLAR+SL P ++ V + T L+Q +VP +Q+L +L SF+K
Sbjct: 271 ALFSATQTSKVKDLARVSLTSPVHVDVDDGRRKVTNEGLEQGYCVVPSKQRLILLISFLK 330
Query: 308 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVL 366
+LN KI+VF ++CK V++ E K + + ++G M Q+RR + F + K+ +L
Sbjct: 331 KNLNKKIMVFFSTCKSVQFHTEIMKI--SDVDVSDIHGGMDQNRRTKTFFDFMKAKKGIL 388
Query: 367 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSG-GRSVLFLTPTEMKML 425
CTDVA+RGLD +VDW++Q D P+ YIHRVGRTAR G+++L L P E++ +
Sbjct: 389 LCTDVAARGLDI-PSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKALLVLIPEELQFI 447
Query: 426 EKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEV 485
L+ AK+P+ + N KRL V L + K ++ A+ A+ YL + + K++
Sbjct: 448 RYLKAAKVPVKELEFNEKRLSNVQSALEKCVAKDYNLNKLAKDAYRAYLSAYNSHSLKDI 507
Query: 486 FDVTKLSIDEFSASLGLPMTPKIRFLNQKKG 516
F+V +L + + S PK+ LN + G
Sbjct: 508 FNVHRLDLLAVAESFCFSSPPKVN-LNIESG 537
>GENEDB_PFALCIPARUM|PFF1500c [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA
helicase, putative" species:5833 "Plasmodium falciparum"
[GO:0016070 "RNA metabolic process" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AL844505 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
RefSeq:XP_966291.1 ProteinModelPortal:C6KTE4
EnsemblProtists:PFF1500c:mRNA GeneID:3885813 KEGG:pfa:PFF1500c
EuPathDB:PlasmoDB:PF3D7_0630900 ProtClustDB:CLSZ2514457
Uniprot:C6KTE4
Length = 601
Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
Identities = 185/466 (39%), Positives = 287/466 (61%)
Query: 57 DSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGK 116
+S + +F++L I K GLK+ FV +T+IQ +PH L G+DILGAAKTGSGK
Sbjct: 139 NSKEHFYSELKFEELNICDALKKGLKELNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGK 198
Query: 117 TLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGR 176
TLAF++P + LY ++ P++G G +IISPTREL Q++ V K + K+ + G++IGG
Sbjct: 199 TLAFLVPSINILYNIKFLPKNGTGVLIISPTRELCLQIYQVCKDLCKYIPQTNGIIIGGM 258
Query: 177 RDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNA 236
+ +K+ ++ +NIL+ TPGRLL HM T F L LI+DEADR+L +GF++ +N
Sbjct: 259 SRNEEKKKFIHGINILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINL 318
Query: 237 IVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLE 296
I+ +LPK RQT LFSATQT V+ L RLSL+ P ++ V + AT RLQQ +V +
Sbjct: 319 IIKRLPKKRQTALFSATQTTKVESLIRLSLQKPIFIEVTTK--IATVERLQQGYALVDED 376
Query: 297 QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIY 356
++ +L++F+K +++ KI+VF +C V++ + + IP C++G+ KQ++R+ +
Sbjct: 377 KRFLLLFTFLKKNMSKKIMVFFNNCMSVQFYNDLLNYI--DIPTYCIHGKKKQNKRLKSF 434
Query: 357 AQF-CEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR-YNSGGRSV 414
F K ++L CT+VA+RGLD V++++Q D P+D YIHRVGRT R +S G ++
Sbjct: 435 HDFSAAKCAILLCTNVAARGLDIPN-VNYIIQYDPPDDSKEYIHRVGRTCRGQDSNGSAI 493
Query: 415 LFLTPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYL 474
+FL E+K L L+ IPI+ + +L + + +++ K + A++AF +YL
Sbjct: 494 IFLMKHELKFLNYLKFYNIPINQFAYDPNKLINIQSHIQSIVTKNFHLHKMAREAFKSYL 553
Query: 475 RSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRF---LNQKKGK 517
K+VFDV L++ S + GL + PK+ LN KK K
Sbjct: 554 NGYITYALKDVFDVNNLNLLLTSKNFGLEVPPKVDLNLKLNVKKKK 599
>UNIPROTKB|C6KTE4 [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA helicase,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 EMBL:AL844505 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_966291.1
ProteinModelPortal:C6KTE4 EnsemblProtists:PFF1500c:mRNA
GeneID:3885813 KEGG:pfa:PFF1500c EuPathDB:PlasmoDB:PF3D7_0630900
ProtClustDB:CLSZ2514457 Uniprot:C6KTE4
Length = 601
Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
Identities = 185/466 (39%), Positives = 287/466 (61%)
Query: 57 DSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGK 116
+S + +F++L I K GLK+ FV +T+IQ +PH L G+DILGAAKTGSGK
Sbjct: 139 NSKEHFYSELKFEELNICDALKKGLKELNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGK 198
Query: 117 TLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGR 176
TLAF++P + LY ++ P++G G +IISPTREL Q++ V K + K+ + G++IGG
Sbjct: 199 TLAFLVPSINILYNIKFLPKNGTGVLIISPTRELCLQIYQVCKDLCKYIPQTNGIIIGGM 258
Query: 177 RDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNA 236
+ +K+ ++ +NIL+ TPGRLL HM T F L LI+DEADR+L +GF++ +N
Sbjct: 259 SRNEEKKKFIHGINILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINL 318
Query: 237 IVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLE 296
I+ +LPK RQT LFSATQT V+ L RLSL+ P ++ V + AT RLQQ +V +
Sbjct: 319 IIKRLPKKRQTALFSATQTTKVESLIRLSLQKPIFIEVTTK--IATVERLQQGYALVDED 376
Query: 297 QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIY 356
++ +L++F+K +++ KI+VF +C V++ + + IP C++G+ KQ++R+ +
Sbjct: 377 KRFLLLFTFLKKNMSKKIMVFFNNCMSVQFYNDLLNYI--DIPTYCIHGKKKQNKRLKSF 434
Query: 357 AQF-CEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR-YNSGGRSV 414
F K ++L CT+VA+RGLD V++++Q D P+D YIHRVGRT R +S G ++
Sbjct: 435 HDFSAAKCAILLCTNVAARGLDIPN-VNYIIQYDPPDDSKEYIHRVGRTCRGQDSNGSAI 493
Query: 415 LFLTPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYL 474
+FL E+K L L+ IPI+ + +L + + +++ K + A++AF +YL
Sbjct: 494 IFLMKHELKFLNYLKFYNIPINQFAYDPNKLINIQSHIQSIVTKNFHLHKMAREAFKSYL 553
Query: 475 RSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRF---LNQKKGK 517
K+VFDV L++ S + GL + PK+ LN KK K
Sbjct: 554 NGYITYALKDVFDVNNLNLLLTSKNFGLEVPPKVDLNLKLNVKKKK 599
>WB|WBGene00015232 [details] [associations]
symbol:B0511.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0043652 "engulfment of apoptotic cell"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0040007 GO:GO:0002119 GO:GO:0003723 GO:GO:0043652
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 HSSP:P10081 EMBL:FO080219
PIR:T33113 RefSeq:NP_492779.1 ProteinModelPortal:O61815 SMR:O61815
DIP:DIP-27278N MINT:MINT-1068292 STRING:O61815 PaxDb:O61815
EnsemblMetazoa:B0511.6.1 EnsemblMetazoa:B0511.6.2 GeneID:172954
KEGG:cel:CELE_B0511.6 UCSC:B0511.6.1 CTD:172954 WormBase:B0511.6
InParanoid:O61815 NextBio:877669 Uniprot:O61815
Length = 544
Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
Identities = 183/479 (38%), Positives = 285/479 (59%)
Query: 56 EDSFSKYVGSTRFDQLP--ISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTG 113
E S+++ T F L ++ ++ GF MT+IQ S+ L G+D+L +AKTG
Sbjct: 56 ETKVSEFLTKTTFASLEGKVNANLLKAVQGLGFTTMTEIQAKSIDPLLEGKDVLASAKTG 115
Query: 114 SGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLI 173
SGKTLAF++P +E L+K W +G G II+SPTREL+ Q + VL + + N + GL++
Sbjct: 116 SGKTLAFLLPAIELLHKLNWKQHNGTGVIIVSPTRELSMQTYGVLSELLEGSNLTYGLVM 175
Query: 174 GG-RRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKK 232
GG R + +K ++ILV TPGRLL H+ T NF ++ LI+DEADRILD+GF+
Sbjct: 176 GGSNRSAEKDKL-AKGVSILVATPGRLLDHLQNTDNFLVRNMKCLIIDEADRILDIGFEI 234
Query: 233 ALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL-KDPQYLSVHEESVTATPNRLQQTAM 291
+ ++ LPK RQ+ LFSAT + V +L +L+L +P +SVHE++ AT LQQ +
Sbjct: 235 EMQQVLRHLPKQRQSMLFSATHSPKVDELVKLALHSNPVRVSVHEKAEEATVEGLQQGYI 294
Query: 292 IVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDR 351
+ P +++L +L++F+K + K++VF +SC VK+ E + IP M ++G+ KQ +
Sbjct: 295 VAPSDKRLLLLFTFLKKNKTKKVMVFFSSCNSVKFHHELLNYI--DIPCMSIHGKQKQQK 352
Query: 352 RMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSG 410
R + QFC+ + +L CTDVA+RGLD AVDW+VQ D ++ YIHRVGRTAR +G
Sbjct: 353 RTTTFFQFCQAETGILLCTDVAARGLDI-PAVDWIVQYDPTDEPREYIHRVGRTARGTNG 411
Query: 411 -GRSVLFLTPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKA 469
G+++L L P E+ L L+ AK+ ++ + + ++ + L L+ K + A++A
Sbjct: 412 SGKALLVLRPEELGFLRYLKAAKVTLNEFEFSWSKVANIQSQLENLISKNYYLNKSAKEA 471
Query: 470 FITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNA 528
+ YLR+ K++FDVT + + S S G + P + K K V ++ L A
Sbjct: 472 YKCYLRAYDSHSLKDIFDVTNMDLTAVSKSFGFSVPPFVDLPISNKPK-VEIRSKLSGA 529
>UNIPROTKB|Q8NHQ9 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
OMA:CACVEYW EMBL:AC055713 EMBL:AC117503 EMBL:BC030020 EMBL:AL833756
EMBL:AB046815 IPI:IPI00185361 RefSeq:NP_065987.1 UniGene:Hs.286173
ProteinModelPortal:Q8NHQ9 SMR:Q8NHQ9 STRING:Q8NHQ9
PhosphoSite:Q8NHQ9 DMDM:296439376 PaxDb:Q8NHQ9 PRIDE:Q8NHQ9
Ensembl:ENST00000238146 GeneID:57696 KEGG:hsa:57696 UCSC:uc001ufi.3
GeneCards:GC12P124086 HGNC:HGNC:20085 neXtProt:NX_Q8NHQ9
PharmGKB:PA134984021 InParanoid:Q8NHQ9 ChiTaRS:DDX55
GenomeRNAi:57696 NextBio:64547 ArrayExpress:Q8NHQ9 Bgee:Q8NHQ9
CleanEx:HS_DDX55 Genevestigator:Q8NHQ9 GermOnline:ENSG00000111364
Uniprot:Q8NHQ9
Length = 600
Score = 733 (263.1 bits), Expect = 4.1e-77, Sum P(2) = 4.1e-77
Identities = 196/548 (35%), Positives = 301/548 (54%)
Query: 64 GSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIP 123
GS +P+ + L++ GF MT +Q A++P + +D+ A TGSGKTLAFVIP
Sbjct: 7 GSWESLPVPLHPQVLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIP 66
Query: 124 VLEKLYK-ERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH-NFSAGLLIGGRRD-VD 180
+LE L + E + VG+III+PTRELA Q+ +VL KH FS L IGGR D
Sbjct: 67 ILEILLRREEKLKKSQVGAIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGED 126
Query: 181 MEKEHVNELNILVCTPGRLLQHMD-ETPNFD---CSQ-LQILILDEADRILDVGFKKALN 235
+E+ NI+V TPGRL + D C + L +L+LDEADR+LD+GF+ ++N
Sbjct: 127 VERFKQQGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASIN 186
Query: 236 AIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTA-----TPNRLQQTA 290
I+ LPK R+T LFSATQT+ V++L R L++P +SV E+ V A TP+RL+
Sbjct: 187 TILEFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYY 246
Query: 291 MIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQD 350
M+ ++K + L F++ H K LVF ++C V+Y +A + L G+ +MC++G+MK
Sbjct: 247 MVCKADEKFNQLVHFLRNHKQEKHLVFFSTCACVEYYGKALEVLVKGVKIMCIHGKMKY- 305
Query: 351 RRMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNS 409
+R I+ +F + +S +L CTDV +RG+D + V+WV+Q D P + ++++HR GRTAR
Sbjct: 306 KRNKIFMEFRKLQSGILVCTDVMARGIDIPE-VNWVLQYDPPSNASAFVHRCGRTARIGH 364
Query: 410 GGRSVLFLTPTEMKMLEKLR-EAKIPIHFTKA--NTKRLQPVSGLLAALLVKYPDMQHRA 466
GG +++FL P E + L K P+ K NT L P L ++ + + +
Sbjct: 365 GGSALVFLLPMEESYINFLAINQKCPLQEMKPQRNTADLLPK---LKSMALADRAVFEKG 421
Query: 467 QKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKK-GKMVPVKPVL 525
KAF++Y+++ + +F + L + L PK+ L K+ VPV
Sbjct: 422 MKAFVSYVQAYAKHECNLIFRLKDLDFASLARGFALLRMPKMPELRGKQFPDFVPVDVNT 481
Query: 526 DNAEKEDKLMIS-REKLLPDNFTEENVDRDILETKDIEDEGKADLLED-VMRATRVKKNK 583
D +DK+ R+KLL E+ E+EG+ +++ + KK K
Sbjct: 482 DTIPFKDKIREKQRQKLLEQQRREKT-----------ENEGRRKFIKNKAWSKQKAKKEK 530
Query: 584 KLKINVHR 591
K K+N R
Sbjct: 531 KKKMNEKR 538
Score = 62 (26.9 bits), Expect = 4.1e-77, Sum P(2) = 4.1e-77
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 537 SREKLLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNK 583
S++K + + N R E DIEDE +LL D ++KK K
Sbjct: 522 SKQKAKKEKKKKMNEKRKREEGSDIEDEDMEELLNDTRLLKKLKKGK 568
>UNIPROTKB|F1RFL5 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
CTD:57696 KO:K14809 GeneTree:ENSGT00550000074969 OMA:CACVEYW
EMBL:CU468658 RefSeq:XP_001927747.2 UniGene:Ssc.4554
UniGene:Ssc.95961 Ensembl:ENSSSCT00000010713 GeneID:100157342
KEGG:ssc:100157342 Uniprot:F1RFL5
Length = 600
Score = 716 (257.1 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
Identities = 196/550 (35%), Positives = 297/550 (54%)
Query: 64 GSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIP 123
GS +P+ + L++ GF MT +Q A++P + +D+ A TGSGKTLAFVIP
Sbjct: 7 GSWESLPVPLHPRVLDVLQELGFPYMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIP 66
Query: 124 VLEKLYK-ERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH-NFSAGLLIGGRR---D 178
+LE L + E + VG+III+PTRELA Q+ +VL K FS L IGGR D
Sbjct: 67 ILEILLRREEKLKKSQVGAIIITPTRELAVQIDEVLSHFTKPFPQFSQILWIGGRNPGED 126
Query: 179 VDMEKEHVNELNILVCTPGRLLQHMD-ETPNFD---C-SQLQILILDEADRILDVGFKKA 233
V KEH NI+V TPGRL + D C L +L+LDEADR+LD+GF+ +
Sbjct: 127 VARFKEHGG--NIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEAS 184
Query: 234 LNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTA-----TPNRLQQ 288
+N I+ LPK R+T LFSATQT+ V++L R L++P +SV E+ A TP+RL+
Sbjct: 185 INTILEFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGAAASSTQKTPSRLEN 244
Query: 289 TAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMK 348
M+ ++K + L F++ H K LVF ++C V+Y +A + L + +MC++G+MK
Sbjct: 245 YYMVCKADEKFNQLVHFLRNHKQEKHLVFFSTCACVEYYGKALEALVRSVKIMCIHGKMK 304
Query: 349 QDRRMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARY 407
+R I+ +F + +S +L CTDV +RG+D + V+WV+Q D P ++++HR GRTAR
Sbjct: 305 Y-KRNKIFMEFRQLQSGILVCTDVMARGIDIPE-VNWVLQYDPPSSASAFVHRCGRTARI 362
Query: 408 NSGGRSVLFLTPTEMKMLEKLR-EAKIPIHFTKA--NTKRLQPVSGLLAALLVKYPDMQH 464
GG +++FL P E + L K P+ K NT L P L ++ + +
Sbjct: 363 GHGGSALVFLLPMEESYVNFLAINQKCPLQAMKLQKNTVDLLPK---LKSMALADRAVFE 419
Query: 465 RAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKK-GKMVPVKP 523
+ KAF++Y+++ + +F + L + L PK+ L K+ VPV
Sbjct: 420 KGMKAFVSYVQAYAKHECNLIFRLKDLDFASIARGFALLRMPKMPELRGKQFPDFVPVDV 479
Query: 524 VLDNAEKEDKLMIS-REKLLPDNFTEENVDRDILETKDIEDEGKADLLED-VMRATRVKK 581
D +DK+ R+KLL E+ E+EG+ +++ + KK
Sbjct: 480 NTDTIPFKDKIREKQRQKLLEQQRKEKT-----------ENEGRRKFIKNKAWSKQKAKK 528
Query: 582 NKKLKINVHR 591
KK K+N R
Sbjct: 529 EKKKKMNEKR 538
Score = 55 (24.4 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 537 SREKLLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNK 583
S++K + + N R E DI DE +LL D + KK K
Sbjct: 522 SKQKAKKEKKKKMNEKRKREEGSDINDEDMEELLNDTRLLKKFKKGK 568
>UNIPROTKB|F1MW45 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 IPI:IPI00726158 UniGene:Bt.74315
GeneTree:ENSGT00550000074969 OMA:CACVEYW EMBL:DAAA02045235
Ensembl:ENSBTAT00000009556 Uniprot:F1MW45
Length = 601
Score = 717 (257.5 bits), Expect = 2.3e-74, Sum P(2) = 2.3e-74
Identities = 193/548 (35%), Positives = 300/548 (54%)
Query: 64 GSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIP 123
GS +P+ + S L++ GF MT +Q A++P + +D+ A TGSGKTLAFVIP
Sbjct: 7 GSWESLPVPLHPQVLSVLRELGFPYMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIP 66
Query: 124 VLEKLYK-ERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH-NFSAGLLIGGRRDVDM 181
++E L + E + VG+III+PTRELA Q+ +VL K FS L IGGR +
Sbjct: 67 IVEILLRREEKFKKSQVGAIIITPTRELAVQIEEVLSHFTKPFPQFSQILWIGGRNPGE- 125
Query: 182 EKEHVNEL--NILVCTPGRLLQHMD-ETPNFD---CSQ-LQILILDEADRILDVGFKKAL 234
+ EL NI+V TPGRL + D C + L++L+LDEADR+LD+GF+ ++
Sbjct: 126 DVARFKELGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLEVLVLDEADRLLDMGFETSI 185
Query: 235 NAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTA-----TPNRLQQT 289
N I+ LPK R+T LFSATQT+ V++L R L++P +SV E+ V A TP+RL+
Sbjct: 186 NTILEFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENH 245
Query: 290 AMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ 349
M+ ++K + L F++ H K LVF ++C V+Y +A + L G+ +MC++G+MK
Sbjct: 246 YMVCKADEKFNQLVHFLRNHKQEKHLVFFSTCACVEYYGKALETLVKGVKIMCIHGKMKY 305
Query: 350 DRRMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYN 408
+R I+ +F + +S +L CTDV +RG+D + V+WV+Q D P + ++++HR GRTAR
Sbjct: 306 -KRNKIFMEFRKLQSGILVCTDVMARGIDIPE-VNWVLQYDPPSNASAFVHRCGRTARIG 363
Query: 409 SGGRSVLFLTPTEMKMLEKLR-EAKIPIHFTKA--NTKRLQPVSGLLAALLVKYPDMQHR 465
GG +++FL P E + L K P+ K NT L P L A+ + + +
Sbjct: 364 HGGSALVFLLPMEESYISFLAINQKCPLQEMKLQKNTADLLPK---LKAMALGDRAVFEK 420
Query: 466 AQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKK-GKMVPVKPV 524
KAF++Y+++ + +F + L + L PK+ L K+ VPV
Sbjct: 421 GMKAFVSYVQAYAKHECNLIFRLKDLDFASLARGFALLRMPKMPELRGKQFPDFVPVDVN 480
Query: 525 LDNAEKEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKADLLED-VMRATRVKKNK 583
D +DK+ REK E+ + E++G+ +++ + KK K
Sbjct: 481 TDTIPFKDKI---REKQRQKQLLEQQ------RKEKTENDGRRKFIKNKAWSKQKAKKEK 531
Query: 584 KLKINVHR 591
K K+ R
Sbjct: 532 KKKLTEKR 539
Score = 52 (23.4 bits), Expect = 2.3e-74, Sum P(2) = 2.3e-74
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 557 ETKDIEDEGKADLLEDVMRATRVKKNK 583
E D+EDE +LL D + KK K
Sbjct: 543 EGSDVEDEDMEELLNDTRLLKKFKKGK 569
>UNIPROTKB|Q2NL08 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:BC111255 IPI:IPI00726158
RefSeq:NP_001039472.1 UniGene:Bt.74315 PRIDE:Q2NL08 GeneID:508581
KEGG:bta:508581 CTD:57696 HOGENOM:HOG000268803 HOVERGEN:HBG107796
InParanoid:Q2NL08 KO:K14809 OrthoDB:EOG4WH8KN NextBio:20868584
Uniprot:Q2NL08
Length = 601
Score = 717 (257.5 bits), Expect = 2.3e-74, Sum P(2) = 2.3e-74
Identities = 194/548 (35%), Positives = 299/548 (54%)
Query: 64 GSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIP 123
GS +P+ K S L++ GF MT +Q A++P + +D+ A TGSGKTLAFVIP
Sbjct: 7 GSWESLPVPLHPKVLSVLRELGFPYMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIP 66
Query: 124 VLEKLYK-ERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH-NFSAGLLIGGRRDVDM 181
+ E L + E + VG+III+PTRELA Q+ +VL K FS L IGGR +
Sbjct: 67 IEEILLRREEKFKKSQVGAIIITPTRELAVQIEEVLSHFTKPFPQFSQILWIGGRNPGE- 125
Query: 182 EKEHVNEL--NILVCTPGRLLQHMD-ETPNFD---CSQ-LQILILDEADRILDVGFKKAL 234
+ EL NI+V TPGRL + D C + L++L+LDEADR+LD+GF+ ++
Sbjct: 126 DVARFKELGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLEVLVLDEADRLLDMGFETSI 185
Query: 235 NAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTA-----TPNRLQQT 289
N I+ LPK R+T LFSATQT+ V++L R L++P +SV E+ V A TP+RL+
Sbjct: 186 NTILEFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENH 245
Query: 290 AMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ 349
M+ ++K + L F++ H K LVF ++C V+Y +A + L G+ +MC++G+MK
Sbjct: 246 YMVCKADEKFNQLVHFLRNHKQEKHLVFFSTCACVEYYGKALETLVKGVKIMCIHGKMKY 305
Query: 350 DRRMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYN 408
+R I+ +F + +S +L CTDV +RG+D + V+WV+Q D P + ++++HR GRTAR
Sbjct: 306 -KRNKIFMEFRKLQSGILVCTDVMARGIDIPE-VNWVLQYDPPSNASAFVHRCGRTARIG 363
Query: 409 SGGRSVLFLTPTEMKMLEKLR-EAKIPIHFTKA--NTKRLQPVSGLLAALLVKYPDMQHR 465
GG +++FL P E + L K P+ K NT L P L A+ + + +
Sbjct: 364 HGGSALVFLLPMEESYISFLAINQKCPLQEMKLQKNTADLLPK---LKAMALGDRAVFEK 420
Query: 466 AQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKK-GKMVPVKPV 524
KAF++Y+++ + +F + L + L PK+ L K+ VPV
Sbjct: 421 GMKAFVSYVQAYAKHECNLIFRLKDLDFASLARGFALLRMPKMPELRGKQFPDFVPVDVN 480
Query: 525 LDNAEKEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKADLLED-VMRATRVKKNK 583
D +DK+ REK E+ + E++G+ +++ + KK K
Sbjct: 481 TDTIPFKDKI---REKQRQKQLLEQQ------RKEKTENDGRRKFIKNKAWSKQKAKKEK 531
Query: 584 KLKINVHR 591
K K+ R
Sbjct: 532 KKKLTEKR 539
Score = 52 (23.4 bits), Expect = 2.3e-74, Sum P(2) = 2.3e-74
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 557 ETKDIEDEGKADLLEDVMRATRVKKNK 583
E D+EDE +LL D + KK K
Sbjct: 543 EGSDVEDEDMEELLNDTRLLKKFKKGK 569
>UNIPROTKB|F1NJA0 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074969 IPI:IPI00590534
OMA:CACVEYW EMBL:AADN02034882 Ensembl:ENSGALT00000005224
Uniprot:F1NJA0
Length = 591
Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
Identities = 204/592 (34%), Positives = 315/592 (53%)
Query: 71 LPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYK 130
+P+S L+D GF +MT +Q A++P + +D+ A TGSGKTLAFVIP+LE L +
Sbjct: 14 VPLSPGVLLALQDLGFDRMTPVQSATIPLFMSNKDVAAEAVTGSGKTLAFVIPILEILLR 73
Query: 131 -ERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH-NFSAGLLIGGRR---DVDMEKEH 185
E + VG+III+PTRELA Q+ +VL KH FS LLIGGR DV+ KEH
Sbjct: 74 REEKLKKMQVGAIIITPTRELAIQIDEVLTHFTKHFPKFSQILLIGGRNPMEDVEKFKEH 133
Query: 186 VNELNILVCTPGRL----LQHMDETPNFDC-SQLQILILDEADRILDVGFKKALNAIVSQ 240
NI+V TPGRL + D C L +L+LDEADR+LD+GF+ +LNAI++
Sbjct: 134 GG--NIIVATPGRLEDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFESSLNAILAF 191
Query: 241 LPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTAT-----PNRLQQTAMIVPL 295
LPK R+T LFSATQT+ V++L R L++P +SV E+ V AT P RL+ MI
Sbjct: 192 LPKQRRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAATNTQKTPTRLENYYMICKA 251
Query: 296 EQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAI 355
++K + L F++ H K LVF ++C V+Y +A + L + +MC++G+MK +R I
Sbjct: 252 DEKFNQLVHFLRQHKQEKHLVFFSTCACVEYYGKALESLIKQVKIMCIHGKMKH-KRNKI 310
Query: 356 YAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSV 414
+ +F +L CTDV +RG+D + V WV+Q D P ++++HR GRTAR + G ++
Sbjct: 311 FTEFRRLAGGILVCTDVMARGIDIPE-VHWVLQYDPPSSASAFVHRCGRTARIGNAGSAL 369
Query: 415 LFLTPTEMKMLEKLR-EAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITY 473
+FL P E + L K P+ + L + L + L + + KAF++Y
Sbjct: 370 VFLLPMEESYINFLSINQKCPMQEMQPQRNVLDLLPKLKSMALADRAVFE-KGMKAFVSY 428
Query: 474 LRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVP-VKPVLDNAEK-- 530
+++ + +F + L + L PK+ L +GK P PV N +
Sbjct: 429 IQAYAKHECNLIFRIKDLDFASLAKGFALLKMPKMPEL---RGKCFPDFTPVTVNTDSIP 485
Query: 531 -EDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRAT-RVKKNKKLKIN 588
+DK +REK ++ +R+ E EGK +++ + + K+ KK K+
Sbjct: 486 FKDK---NREKQRQKQLEQQRKERE-------ESEGKKKFIKNKSWSKQKAKREKKRKLT 535
Query: 589 VHRPL--GTRLVFDEECNTVPPLAMLADTKNANVSLDQDQK--TEYYKKIRE 636
R G+ + ++ + +L K +S ++ +K T K +E
Sbjct: 536 AKRKREEGSDMEDEDMEELLNDTRLLKRLKKGKISEEEFEKRLTGSQSKFKE 587
>UNIPROTKB|Q5ZLN8 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AJ719696 IPI:IPI00590534 RefSeq:NP_001006185.1
UniGene:Gga.42731 ProteinModelPortal:Q5ZLN8 STRING:Q5ZLN8
PRIDE:Q5ZLN8 GeneID:416820 KEGG:gga:416820 InParanoid:Q5ZLN8
NextBio:20820225 Uniprot:Q5ZLN8
Length = 591
Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
Identities = 205/597 (34%), Positives = 316/597 (52%)
Query: 68 FDQLPI--SKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVL 125
+ LP+ S L+D GF +MT +Q A++P + +D+ A TGSGKTLAFVIP+L
Sbjct: 9 WSSLPVALSPGVLRALQDLGFDRMTPVQSATIPLFMSNKDVAAEAVTGSGKTLAFVIPIL 68
Query: 126 EKLYK-ERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH-NFSAGLLIGGRR---DVD 180
E L + E + VG+III+PTRELA Q+ +VL KH FS LLIGGR DV+
Sbjct: 69 EILLRREEKLKKMQVGAIIITPTRELAIQIDEVLTHFTKHFPKFSQILLIGGRNPMEDVE 128
Query: 181 MEKEHVNELNILVCTPGRL----LQHMDETPNFDC-SQLQILILDEADRILDVGFKKALN 235
KEH NI+V TPGRL + D C L +L+LDEADR+LD+GF+ +LN
Sbjct: 129 KFKEHGG--NIIVATPGRLEDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFESSLN 186
Query: 236 AIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTAT-----PNRLQQTA 290
AI++ LPK R+T LFSATQT+ V++L R L++P +SV E+ V AT P RL+
Sbjct: 187 AILAFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAATNTQKTPTRLENYY 246
Query: 291 MIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQD 350
MI ++K + L F++ H K LVF ++C V+Y +A + L + +MC++G+MK
Sbjct: 247 MICKADEKFNQLVHFLRQHKQEKHLVFFSTCACVEYYGKALESLIKQVKIMCIHGKMKH- 305
Query: 351 RRMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNS 409
+R I+ +F +L CTDV +RG+D + V WV+Q D P ++++HR GRTAR +
Sbjct: 306 KRNKIFTEFRRLAGGILVCTDVMARGIDIPE-VHWVLQYDPPSSASAFVHRCGRTARIGN 364
Query: 410 GGRSVLFLTPTEMKMLEKLR-EAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQK 468
G +++FL P E + L K P+ + L + L + L + + K
Sbjct: 365 AGSALVFLLPMEESYINFLSINQKCPMQEMQPQRNVLDLLPKLKSMALADRAVFE-KGMK 423
Query: 469 AFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVP-VKPVLDN 527
AF++Y+++ + +F + L + L PK+ L +GK P PV N
Sbjct: 424 AFVSYIQAYAKHECNLIFRIKDLDFASLAKGFALLKMPKMPEL---RGKCFPDFTPVTVN 480
Query: 528 AEK---EDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRAT-RVKKNK 583
+ +DK +REK ++ +R+ E EGK +++ + + K+ K
Sbjct: 481 TDSIPFKDK---NREKQRQKQLEQQRKERE-------ESEGKKKFIKNKSWSKQKAKREK 530
Query: 584 KLKINVHRPL--GTRLVFDEECNTVPPLAMLADTKNANVSLDQDQK--TEYYKKIRE 636
K K+ R G+ + ++ + +L K +S ++ +K T K +E
Sbjct: 531 KRKLTAKRKREEGSDMEDEDMEELLNDTRLLKRLKKGKISEEEFEKRLTGSQSKFKE 587
>MGI|MGI:1915098 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915098 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
GeneTree:ENSGT00550000074969 OMA:CACVEYW EMBL:AK129402
EMBL:AK033741 EMBL:AK154422 EMBL:BC117786 EMBL:BC117787
IPI:IPI00453808 RefSeq:NP_080685.2 UniGene:Mm.281601
ProteinModelPortal:Q6ZPL9 SMR:Q6ZPL9 IntAct:Q6ZPL9 STRING:Q6ZPL9
PRIDE:Q6ZPL9 Ensembl:ENSMUST00000071057 GeneID:67848 KEGG:mmu:67848
UCSC:uc008zqc.2 InParanoid:Q6ZPL9 NextBio:325707 Bgee:Q6ZPL9
CleanEx:MM_DDX55 Genevestigator:Q6ZPL9
GermOnline:ENSMUSG00000029389 Uniprot:Q6ZPL9
Length = 600
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 193/555 (34%), Positives = 304/555 (54%)
Query: 70 QLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLY 129
Q+P+ + L++ GF MT +Q A++P + +D+ A TGSGKTLAFVIP+LE L
Sbjct: 13 QVPLHPRVLGALRELGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILL 72
Query: 130 K-ERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH-NFSAGLLIGGRR---DVDMEKE 184
+ E ++ VG+I+I+PTRELA Q+ +VL KH FS L IGGR DV+ K+
Sbjct: 73 RREEKLKKNQVGAIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQ 132
Query: 185 HVNELNILVCTPGRLLQHMD-ETPNFD---C-SQLQILILDEADRILDVGFKKALNAIVS 239
H NI+V TPGRL + D C L +L+LDEADR+LD+GF+ ++N I+
Sbjct: 133 HGG--NIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILE 190
Query: 240 QLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTA-----TPNRLQQTAMIVP 294
LPK R+T LFSATQT+ V++L R L++P +SV E+ V A TP+RL+ MI
Sbjct: 191 FLPKQRRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMICK 250
Query: 295 LEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMA 354
++K + L F+++ K LVF ++C V+Y +A + L + ++C++G+MK +R
Sbjct: 251 ADEKFNQLVHFLRSRQQEKHLVFFSTCACVEYYGKALEALLKKVKILCIHGKMKY-KRNK 309
Query: 355 IYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRS 413
I+ +F + +S +L CTDV +RG+D + V+WV+Q D P + ++++HR GRTAR GG +
Sbjct: 310 IFMEFRKLQSGILVCTDVMARGIDIPE-VNWVLQYDPPSNASAFVHRCGRTARIGHGGSA 368
Query: 414 VLFLTPTEMKMLEKLR-EAKIPIH--FTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAF 470
++FL P E + L K P+ + NT L P L A+ + + + KAF
Sbjct: 369 LVFLLPMEEAYINFLAINQKCPLQEMSLQRNTIDLLPK---LRAMALADRAVFEKGMKAF 425
Query: 471 ITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKK-GKMVPVKPVLDNAE 529
++++++ + +F + L + L P++ L K+ VPV D
Sbjct: 426 VSFVQAYAKHECSLIFRLKDLDFAGLARGFALLRMPRMPELRGKQFPDFVPVDIDTDTIP 485
Query: 530 KEDKLMIS-REKLLPDNFTEENVDRDILETKDIEDEGKADLLED-VMRATRVKKNKKLKI 587
+DK+ R+KLL E + E+EG+ +++ + KK +K K+
Sbjct: 486 FKDKIREKQRQKLLEQKRKERS-----------ENEGRKKFIKNKAWSKQKAKKERKKKM 534
Query: 588 NVHRPLGTRLVFDEE 602
N R D+E
Sbjct: 535 NAKRKKDEGSDIDDE 549
>RGD|2324094 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:2324094
GO:GO:0005524 GO:GO:0003723 EMBL:CH473973 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 CTD:57696 KO:K14809
OrthoDB:EOG4WH8KN GeneTree:ENSGT00550000074969 IPI:IPI00370890
RefSeq:NP_001258255.1 UniGene:Rn.209289 Ensembl:ENSRNOT00000001387
GeneID:100362764 KEGG:rno:100362764 UCSC:RGD:2324094 Uniprot:D3ZX56
Length = 600
Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
Identities = 194/561 (34%), Positives = 305/561 (54%)
Query: 64 GSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIP 123
GS Q+P+ L++ GF+ MT +Q A++P + +D+ A TGSGKTLAFVIP
Sbjct: 7 GSWESLQVPLHPLVLGALRELGFLHMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIP 66
Query: 124 VLEKLYK-ERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH-NFSAGLLIGGRR---D 178
+LE L + E ++ VG+I+I+PTRELA Q+ +VL KH FS L IGGR D
Sbjct: 67 ILEILLRREEKLKKNQVGAIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGED 126
Query: 179 VDMEKEHVNELNILVCTPGRLLQHMD-ETPNFDCSQ----LQILILDEADRILDVGFKKA 233
V+ K+H NI+V TPGRL + D + L +L+LDEADR+LD+GF+ +
Sbjct: 127 VERFKQHGG--NIIVATPGRLEDMFRRKAEGLDLASYVKSLDVLVLDEADRLLDMGFEAS 184
Query: 234 LNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTA-----TPNRLQQ 288
+N I+ LPK R+T LFSATQT+ V++L R L++P +SV E+ V A TP+RL+
Sbjct: 185 INTILEFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLEN 244
Query: 289 TAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMK 348
MI ++K + L F+++ K LVF ++C V+Y +A + L + ++C++G+MK
Sbjct: 245 HYMICKADEKFNQLVHFLRSRQQEKHLVFFSTCACVEYYGKALEALVQRVKILCIHGKMK 304
Query: 349 QDRRMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARY 407
+R I+ +F + +S +L CTDV +RG+D + V+WV+Q D P + ++++HR GRTAR
Sbjct: 305 Y-KRNKIFMEFRKLQSGILVCTDVMARGIDIPE-VNWVLQYDPPSNASAFVHRCGRTARI 362
Query: 408 NSGGRSVLFLTPTEMKMLEKLR-EAKIPIH--FTKANTKRLQPVSGLLAALLVKYPDMQH 464
GG +++FL P E + L K P+ + NT L P L A+ + +
Sbjct: 363 GHGGSALVFLLPMEEAYINFLAINQKCPLQEMSLQRNTVDLLPK---LRAMALADRAVFE 419
Query: 465 RAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKK-GKMVPVKP 523
+ KAF++++++ + +F + L + L P++ L K+ VPV
Sbjct: 420 KGMKAFVSFVQAYAKHECSLIFRLKDLDFAGLARGFALLRMPRMPELKGKQFPDFVPVDI 479
Query: 524 VLDNAEKEDKLMIS-REKLLPDNFTEENVDRDILETKDIEDEGKADLLED-VMRATRVKK 581
D +DK+ R+KLL E E+EG+ +++ + KK
Sbjct: 480 DTDTIPFKDKIREKQRQKLLEQKRKERT-----------ENEGRRKFIKNKAWSKQKAKK 528
Query: 582 NKKLKINVHRPLGTRLVFDEE 602
+K K+N R D+E
Sbjct: 529 ERKKKMNAKRKKDEGSDIDDE 549
>UNIPROTKB|F1P8J6 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 CTD:57696 KO:K14809 GeneTree:ENSGT00550000074969
EMBL:AAEX03014637 RefSeq:XP_543371.2 Ensembl:ENSCAFT00000011945
GeneID:486246 KEGG:cfa:486246 Uniprot:F1P8J6
Length = 599
Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
Identities = 192/553 (34%), Positives = 301/553 (54%)
Query: 61 KYVGSTRFDQLP--ISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTL 118
++V ++ LP + + L GF MT +Q A++P + +D+ A TGSGKTL
Sbjct: 2 EHVTEGSWESLPTQLHPQVLGALGQLGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTL 61
Query: 119 AFVIPVLEKLYK-ERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH-NFSAGLLIGGR 176
AFVIP+LE L + E ++ VG+III+PTRELA Q+ +VL K FS L IGGR
Sbjct: 62 AFVIPILEILLRREEKLKKNQVGAIIITPTRELAIQVDEVLAHFTKSFPQFSQILWIGGR 121
Query: 177 R---DVDMEKEHVNELNILVCTPGRLLQHMD-ETPNFD---C-SQLQILILDEADRILDV 228
DV KE NI+V TPGRL + D C L++L+LDEADR+LD+
Sbjct: 122 NPADDVSRFKEQGG--NIIVATPGRLEDMFRRKVEGLDLASCVKSLEVLVLDEADRLLDM 179
Query: 229 GFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTA-----TP 283
GF+ ++N I+ LPK R+T LFSATQT+ V+ L R L++P +SV E+ V A TP
Sbjct: 180 GFEASINTILEFLPKQRRTGLFSATQTQEVESLVRAGLRNPVRISVKEKGVAASSTQKTP 239
Query: 284 NRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCL 343
+RL+ M+ ++K + L F++ H K L+F ++C V+Y +A + L + +MC+
Sbjct: 240 SRLENYYMVCKADEKFNQLVHFLRNHKQEKHLIFFSTCACVEYYGKALEALVKSVKIMCI 299
Query: 344 YGRMKQDRRMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVG 402
+G+MK +R I+ +F + +S +L CTDV +RG+D + V+WV+Q D P ++++HR G
Sbjct: 300 HGKMKH-KRNKIFMEFRKLQSGILVCTDVMARGIDIPE-VNWVLQYDPPSSASAFVHRCG 357
Query: 403 RTARYNSGGRSVLFLTPTEMKMLEKLR-EAKIPIHFTKA--NTKRLQPVSGLLAALLVKY 459
RTAR GG +++FL P E + L K P+ K NT L P L ++ +
Sbjct: 358 RTARIGHGGSALVFLLPMEESYVTFLEINQKCPLQEMKLQKNTGDLLPK---LKSMALAD 414
Query: 460 PDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKK-GKM 518
+ + KAF++Y+++ + +F + L + L PK+ L ++
Sbjct: 415 RAVFEKGMKAFVSYVQAYAKHECNLIFRLKDLDFASLARGFALLRMPKMPELRGRQFPDF 474
Query: 519 VPVKPVLDNAEKEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRATR 578
VP +N +DK+ REK ++ ++R E + E+EG+ ++ +
Sbjct: 475 VPADVDTNNIPFKDKI---REKQ-----RQKLLERQRKEKR--ENEGRKNIKNKAWSKQK 524
Query: 579 VKKNKKLKINVHR 591
KK KK ++N R
Sbjct: 525 AKKEKKKRMNEKR 537
>UNIPROTKB|F1SV16 [details] [associations]
symbol:F1SV16 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074980 EMBL:CU930036
Ensembl:ENSSSCT00000016375 OMA:SAREVPM Uniprot:F1SV16
Length = 301
Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
Identities = 139/233 (59%), Positives = 183/233 (78%)
Query: 47 KKEPIGRIGEDSFSKYVGS-TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRD 105
++E I R+ ++ V TRF LP+SKKT GL++A + +T+IQ+ ++ +L G+D
Sbjct: 49 EREVISRLVQNYEKINVNEITRFSDLPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKD 108
Query: 106 ILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH 165
+LGAAKTGSGKTLAF++PVLE LY+ +W DG+G +IISPTRELA Q F+VL+ VGK+H
Sbjct: 109 VLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNH 168
Query: 166 NFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRI 225
+FSAGL+IGG+ D+ E E +N +NILVCTPGRLLQHMDET F + LQ+L+LDEADRI
Sbjct: 169 DFSAGLIIGGK-DLKHEAERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRI 227
Query: 226 LDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEES 278
LD+GF +NAI+ LPK RQT LFSATQTKSV+DLARLSLK+P+Y+ VHE++
Sbjct: 228 LDMGFADTMNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKA 280
>UNIPROTKB|F6XWM4 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074969
Ensembl:ENSCAFT00000035837 EMBL:AAEX03014637 OMA:DADNVFA
Uniprot:F6XWM4
Length = 734
Score = 657 (236.3 bits), Expect = 1.1e-68, Sum P(2) = 1.1e-68
Identities = 179/500 (35%), Positives = 276/500 (55%)
Query: 112 TGSGKTLAFVIPVLEKLYK-ERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH-NFSA 169
TGSGKTLAFVIP+LE L + E ++ VG+III+PTRELA Q+ +VL K FS
Sbjct: 190 TGSGKTLAFVIPILEILLRREEKLKKNQVGAIIITPTRELAIQVDEVLAHFTKSFPQFSQ 249
Query: 170 GLLIGGRR---DVDMEKEHVNELNILVCTPGRLLQHMD-ETPNFD---C-SQLQILILDE 221
L IGGR DV KE NI+V TPGRL + D C L++L+LDE
Sbjct: 250 ILWIGGRNPADDVSRFKEQGG--NIIVATPGRLEDMFRRKVEGLDLASCVKSLEVLVLDE 307
Query: 222 ADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTA 281
ADR+LD+GF+ ++N I+ LPK R+T LFSATQT+ V+ L R L++P +SV E+ V A
Sbjct: 308 ADRLLDMGFEASINTILEFLPKQRRTGLFSATQTQEVESLVRAGLRNPVRISVKEKGVAA 367
Query: 282 -----TPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRP 336
TP+RL+ M+ ++K + L F++ H K L+F ++C V+Y +A + L
Sbjct: 368 SSTQKTPSRLENYYMVCKADEKFNQLVHFLRNHKQEKHLIFFSTCACVEYYGKALEALVK 427
Query: 337 GIPLMCLYGRMKQDRRMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVA 395
+ +MC++G+MK +R I+ +F + +S +L CTDV +RG+D + V+WV+Q D P +
Sbjct: 428 SVKIMCIHGKMKH-KRNKIFMEFRKLQSGILVCTDVMARGIDIPE-VNWVLQYDPPSSAS 485
Query: 396 SYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLR-EAKIPIHFTKA--NTKRLQPVSGLL 452
+++HR GRTAR GG +++FL P E + L K P+ K NT L P L
Sbjct: 486 AFVHRCGRTARIGHGGSALVFLLPMEESYVTFLEINQKCPLQEMKLQKNTGDLLPK---L 542
Query: 453 AALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLN 512
++ + + + KAF++Y+++ + +F + L + L PK+ L
Sbjct: 543 KSMALADRAVFEKGMKAFVSYVQAYAKHECNLIFRLKDLDFASLARGFALLRMPKMPELR 602
Query: 513 QKK-GKMVPVKPVLDNAEKEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKADLLE 571
++ VP +N +DK+ REK ++ ++R E + E+EG+ ++
Sbjct: 603 GRQFPDFVPADVDTNNIPFKDKI---REKQ-----RQKLLERQRKEKR--ENEGRKNIKN 652
Query: 572 DVMRATRVKKNKKLKINVHR 591
+ KK KK ++N R
Sbjct: 653 KAWSKQKAKKEKKKRMNEKR 672
Score = 58 (25.5 bits), Expect = 1.1e-68, Sum P(2) = 1.1e-68
Identities = 19/75 (25%), Positives = 34/75 (45%)
Query: 52 GRIGEDSFSKYVGSTRFDQLP--ISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGA 109
G E ++V ++ LP + + L GF MT +Q A++P + +D+
Sbjct: 97 GAQAEGCAMEHVTEGSWESLPTQLHPQVLGALGQLGFPHMTPVQSATIPLFMKNKDVAAE 156
Query: 110 AKTGSGK-TLAFVIP 123
A + S K +L+ P
Sbjct: 157 AVSTSWKCSLSSCFP 171
>TAIR|locus:2825324 [details] [associations]
symbol:AT1G71370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0003723 EMBL:AC016163 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268803 KO:K14809 EMBL:AK118294 IPI:IPI00527105
RefSeq:NP_177293.1 UniGene:At.70349 ProteinModelPortal:Q8GXD6
SMR:Q8GXD6 PRIDE:Q8GXD6 EnsemblPlants:AT1G71370.1 GeneID:843478
KEGG:ath:AT1G71370 GeneFarm:1028 TAIR:At1g71370 InParanoid:Q8GXD6
OMA:EYLKCEA PhylomeDB:Q8GXD6 ProtClustDB:CLSN2914591
Genevestigator:Q8GXD6 GermOnline:AT1G71370 Uniprot:Q8GXD6
Length = 558
Score = 663 (238.4 bits), Expect = 2.6e-67, Sum P(2) = 2.6e-67
Identities = 181/527 (34%), Positives = 279/527 (52%)
Query: 67 RFDQL--PISKKTKSGLKDAGFVKMTDIQRASLPHSLCG-RDILGAAKTGSGKTLAFVIP 123
RF +L P+S+ L +GF T +Q ++P LC +D++ A TGSGKTLAF++P
Sbjct: 15 RFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPF-LCSHKDVVVDAATGSGKTLAFLLP 73
Query: 124 VLEKLYKER-WGPEDG-VGSIIISPTRELADQLFDVLKA-VGKHHNFSAGLLIGGRR-DV 179
+E + + + P+ V +IISPTREL+ Q+ V + V N ++ LL+GGR +
Sbjct: 74 FIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEA 133
Query: 180 DMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVS 239
DM N+L+ TPGRL M D L+ILILDEADR+LD+GF+K +N I+S
Sbjct: 134 DMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIIS 193
Query: 240 QLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKL 299
+LPK R+T LFSATQT++V DLA+ L++ + ES + T + L + +QK
Sbjct: 194 RLPKQRRTGLFSATQTQAVADLAKAGLRNAMEVISGAESKSKTSSGLYCEYLKCEADQKS 253
Query: 300 DMLWSFIKAHLNSKILVFLTSCKQVKY---VFEAFKKLRPGIPLMCLYGRMKQDRRMAIY 356
L + + N K++VF +C V Y V L+ I +G+M Q R
Sbjct: 254 SQLVHLLIENKNKKLVVFFMTCACVDYWGLVLSKIPTLK-SISFFSTHGKMDQKGRDTAL 312
Query: 357 AQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVL 415
A F E S VL CTDVA+RGLD +D+VVQ D P+D +IHRVGRTAR GR+++
Sbjct: 313 ASFTEASSGVLLCTDVAARGLDI-PGIDYVVQYDPPQDPDVFIHRVGRTARMERQGRAIV 371
Query: 416 FLTPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLR 475
FL P E +E +R ++P+ K + + V ++ +L +K + + +AF++++R
Sbjct: 372 FLMPKETDYVEFMRIRRVPLQERKCS-ENASDVIPIIRSLAIKDRAVLEKGLQAFVSFVR 430
Query: 476 SVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNAEKEDKLM 535
+ +F L I + + G+ P I + Q + +V PV ++ K
Sbjct: 431 AYKEHHCSYIFSWKGLEIGKLAMGYGILSFPYISEVKQDRIGIVGFTPVQGITFEDIKYK 490
Query: 536 I-SREKLLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRATRVKK 581
SREK N D+ E + + + ++D +A+R +K
Sbjct: 491 NKSREKQRQQNLLARK-DKLQQEKRGKRKKSSKEAVDDSNKASRKRK 536
Score = 39 (18.8 bits), Expect = 2.6e-67, Sum P(2) = 2.6e-67
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 690 ERGRRKKAKIYFDSDSDNDNDERK 713
+RG+RKK+ DS+ + +RK
Sbjct: 513 KRGKRKKSSKEAVDDSNKASRKRK 536
>FB|FBgn0037561 [details] [associations]
symbol:CG9630 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P10081 KO:K14809
GeneTree:ENSGT00550000074969 EMBL:AY051513 RefSeq:NP_649777.1
UniGene:Dm.1101 ProteinModelPortal:Q9VHU1 SMR:Q9VHU1 IntAct:Q9VHU1
STRING:Q9VHU1 PaxDb:Q9VHU1 PRIDE:Q9VHU1 EnsemblMetazoa:FBtr0081866
GeneID:40974 KEGG:dme:Dmel_CG9630 UCSC:CG9630-RA
FlyBase:FBgn0037561 InParanoid:Q9VHU1 OMA:CACVEYW OrthoDB:EOG4TDZ1Q
PhylomeDB:Q9VHU1 GenomeRNAi:40974 NextBio:821545 Bgee:Q9VHU1
GermOnline:CG9630 Uniprot:Q9VHU1
Length = 613
Score = 660 (237.4 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
Identities = 168/473 (35%), Positives = 266/473 (56%)
Query: 69 DQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKL 128
D+ P+S ++ GF +MT +Q A++P L +D+ A TGSGKTLAF++P+LE L
Sbjct: 10 DKPPLSDAVLQVVQSFGFQQMTPVQTAAIPLLLARKDVSAEAVTGSGKTLAFLVPMLEIL 69
Query: 129 ---YKER-WGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNF---SAGLLIGGRR-DVD 180
+KE WGP++ +G+++ISPTRELA Q+ +VL +H + + L++GG + D
Sbjct: 70 QRRHKETPWGPKE-IGALVISPTRELARQISEVLAQFLEHEDLEHLNQQLIVGGNSIEED 128
Query: 181 MEKEHVNELNILVCTPGRL---LQHMDETPNF--DCSQLQILILDEADRILDVGFKKALN 235
+ ILVCTPGRL Q + N L+ L+LDEADR+LD+GFK ++N
Sbjct: 129 IATLRRETPCILVCTPGRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLDLGFKTSVN 188
Query: 236 AIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPL 295
I+ LP+ R+T LFSATQT V DL R L++P +SV E++ TP RLQ IV
Sbjct: 189 NILGYLPRQRRTGLFSATQTTEVTDLIRAGLRNPVLVSVKEKASVNTPARLQNFYRIVEP 248
Query: 296 EQKLDMLWSFIK--AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRM 353
E K L F+ A + K++VF +C V+Y EA L P ++ ++G+MK ++R
Sbjct: 249 ELKFVALLEFLSSPATVIGKVMVFFPTCACVEYWAEALPPLLPKRTVLGIHGKMK-NKRA 307
Query: 354 AIYAQFCEK-RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGR 412
+ +F ++VL CTDV +RGLD + ++WVVQ D P +S++HRVGRTAR + G
Sbjct: 308 NVVEKFRNTPQAVLLCTDVLARGLDVPE-IEWVVQWDPPSTASSFVHRVGRTARQGNEGN 366
Query: 413 SVLFLTPTE------MKMLEKLREAKIPIHFTK---ANTKRLQPVSGLLAALLVKYPDMQ 463
+++FL P+E +K+ +K+ K+ + K+L V L L +
Sbjct: 367 ALVFLLPSEDAYVHFLKINQKVELTKLLTEEAEDADREKKKLPAVLDQLHRLQAADKGVY 426
Query: 464 HRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKG 516
+ +AF++++R+ + + + L + + + + GL P++ L +G
Sbjct: 427 DKGMRAFVSHVRAYTKHECSAILRLKDLDLGKMATAYGLLQLPRMPELKNYQG 479
Score = 37 (18.1 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 621 SLDQDQKTEYYKKIREELKRA 641
S DQ +K + K ++EL++A
Sbjct: 530 SWDQTKKAKLDAKSKKELRKA 550
Score = 37 (18.1 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 559 KDIEDEGKADLLEDVMRATRVKKNKKLKINVHRPLG 594
+ E +L D+ R+KKNK + + + +G
Sbjct: 572 QQFSQEDLDELASDIRLFKRLKKNKISEEDFDKAMG 607
>UNIPROTKB|E2R316 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 Ensembl:ENSCAFT00000035837 Uniprot:E2R316
Length = 483
Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
Identities = 173/470 (36%), Positives = 267/470 (56%)
Query: 61 KYVGSTRFDQLP--ISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTL 118
++V ++ LP + + L GF MT +Q A++P + +D+ A TGSGKTL
Sbjct: 2 EHVTEGSWESLPTQLHPQVLGALGQLGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTL 61
Query: 119 AFVIPVLEKLYK-ERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH-NFSAGLLIGGR 176
AFVIP+LE L + E ++ VG+III+PTRELA Q+ +VL K FS L IGGR
Sbjct: 62 AFVIPILEILLRREEKLKKNQVGAIIITPTRELAIQVDEVLAHFTKSFPQFSQILWIGGR 121
Query: 177 R---DVDMEKEHVNELNILVCTPGRLLQHMD-ETPNFD---C-SQLQILILDEADRILDV 228
DV KE NI+V TPGRL + D C L++L+LDEADR+LD+
Sbjct: 122 NPADDVSRFKEQGG--NIIVATPGRLEDMFRRKVEGLDLASCVKSLEVLVLDEADRLLDM 179
Query: 229 GFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTA-----TP 283
GF+ ++N I+ LPK R+T LFSATQT+ V+ L R L++P +SV E+ V A TP
Sbjct: 180 GFEASINTILEFLPKQRRTGLFSATQTQEVESLVRAGLRNPVRISVKEKGVAASSTQKTP 239
Query: 284 NRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCL 343
+RL+ M+ ++K + L F++ H K L+F ++C V+Y +A + L + +MC+
Sbjct: 240 SRLENYYMVCKADEKFNQLVHFLRNHKQEKHLIFFSTCACVEYYGKALEALVKSVKIMCI 299
Query: 344 YGRMKQDRRMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVG 402
+G+MK +R I+ +F + +S +L CTDV +RG+D + V+WV+Q D P ++++HR G
Sbjct: 300 HGKMKH-KRNKIFMEFRKLQSGILVCTDVMARGIDIPE-VNWVLQYDPPSSASAFVHRCG 357
Query: 403 RTARYNSGGRSVLFLTPTEMKMLEKLR-EAKIPIHFTKA--NTKRLQPVSGLLAALLVKY 459
RTAR GG +++FL P E + L K P+ K NT L P L ++ +
Sbjct: 358 RTARIGHGGSALVFLLPMEESYVTFLEINQKCPLQEMKLQKNTGDLLPK---LKSMALAD 414
Query: 460 PDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIR 509
+ + KAF++Y+++ + +F + + A L +P P++R
Sbjct: 415 RAVFEKGMKAFVSYVQAYAKHECNLIFRLKAKILARGFALLRMPKMPELR 464
>DICTYBASE|DDB_G0291588 [details] [associations]
symbol:ddx55 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0291588 GO:GO:0005524
EMBL:AAFI02000177 GenomeReviews:CM000155_GR GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K14809
OMA:HEKKVET RefSeq:XP_635318.1 ProteinModelPortal:Q54EC2
STRING:Q54EC2 EnsemblProtists:DDB0234215 GeneID:8628262
KEGG:ddi:DDB_G0291588 ProtClustDB:CLSZ2429585 Uniprot:Q54EC2
Length = 663
Score = 488 (176.8 bits), Expect = 3.9e-66, Sum P(3) = 3.9e-66
Identities = 137/433 (31%), Positives = 228/433 (52%)
Query: 163 KHHNFSAGLLIGGRRDVDMEKEHVNELN----ILVCTPGR----LLQHMDETPNFDCSQL 214
K S+ LLIGG D+ ++ VN N IL+ TPGR L + + F +
Sbjct: 152 KKIEISSLLLIGG---TDIYQDLVNYKNYGGNILIGTPGRTDEFLTRVVRNDQQFKFKEF 208
Query: 215 QILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDP----- 269
++LILDEADR+LD+GF +N+I+ +LPK R+T LFSATQT V++LAR +++P
Sbjct: 209 EMLILDEADRLLDMGFHLPINSILLKLPKQRRTGLFSATQTSEVKELARTGMRNPFKVSV 268
Query: 270 --QYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLN-SKILVFLTSCKQVKY 326
+++ HE+ + P L MIVP+E++L+ L F+ H++ +KI+++ +C V Y
Sbjct: 269 SVKHIETHEDQ--SIPTTLDNRYMIVPVEERLNQLVHFLLNHIDKNKIIIYFLTCSTVDY 326
Query: 327 VFEAFK--KLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVD 383
F+ + K+ G P L+G+ +R+ ++ F + + L TD+A+RGLD VD
Sbjct: 327 FFKILQSVKVLSGKPFFSLHGKAPHSQRIKVFDSFSQATNGCLLSTDLAARGLDIPN-VD 385
Query: 384 WVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKIP-IHFTKA-N 441
WV+Q D P+D +++HR+GRTAR G +++FL+P E +E L+ K+P + KA N
Sbjct: 386 WVLQYDSPQDPKAFVHRIGRTARMGRDGNALIFLSPEEDSYIEFLKIKKVPLVEMVKAEN 445
Query: 442 TKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLG 501
+ P + + ++ + A ++++R +F +L+I + G
Sbjct: 446 VTNVLPE---IKKISFNDREIMEKGVIAMVSHVRGYKEHLCPYIFVFHRLNIGLLATGFG 502
Query: 502 L---PMTPKIR--FLNQKKGKMVPVKPVLDNAEKEDKLMISREKLLPDNFTEENVDRDIL 556
L P P+IR L + +L A KE K +++L N + ++D
Sbjct: 503 LLYLPRMPEIRDKTLIAEWTSGYTKDQILKIAYKEKKK--EKQRLEKVNKIKLKKEKDAK 560
Query: 557 ETKDIEDEGKADL 569
E +D +E K L
Sbjct: 561 ERQDAINEKKRKL 573
Score = 177 (67.4 bits), Expect = 3.9e-66, Sum P(3) = 3.9e-66
Identities = 40/87 (45%), Positives = 55/87 (63%)
Query: 73 ISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKER 132
+S T + + GF M+ +Q A +P + +D+L A TGSGKTLAFVIP++EK+ K
Sbjct: 17 LSDSTLNTINRLGFKSMSPVQSAVIPLFMSNKDVLVEACTGSGKTLAFVIPIIEKILKRE 76
Query: 133 WG-PEDGVGSIIISPTRELADQLFDVL 158
+ + SIIISPTRELA Q+ VL
Sbjct: 77 TNLKKTDIASIIISPTRELAIQIQQVL 103
Score = 39 (18.8 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 12/56 (21%), Positives = 31/56 (55%)
Query: 549 ENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINVHRPLGTRLVFDEECN 604
+ ++ ++LE ++ E+ K + E++ + KK KK++I+ +G ++ + N
Sbjct: 123 KTLEDELLEEQEEEENEKEE--EEIEKK---KKKKKIEISSLLLIGGTDIYQDLVN 173
Score = 38 (18.4 bits), Expect = 3.9e-66, Sum P(3) = 3.9e-66
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 702 DSDSDNDNDERKQNKDD 718
D++ +N+ DE + ++D
Sbjct: 644 DTEQNNNEDEEDEEEED 660
Score = 38 (18.4 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 18/76 (23%), Positives = 34/76 (44%)
Query: 511 LNQKKGKMVPVKPVLDNAEKEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKADLL 570
+N+KK K+ ++ DKL+ +K P + E + E K E E ++L
Sbjct: 566 INEKKRKL--------EQQEADKLL---QKQQPKQSSIEIQLKKQEEKKKQEQESINEIL 614
Query: 571 EDVMRATRVKKNKKLK 586
+ + +K+K+ K
Sbjct: 615 HETQAFKKARKSKQQK 630
>ZFIN|ZDB-GENE-021212-1 [details] [associations]
symbol:ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
55" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021212-1 GO:GO:0007275 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AF506203 EMBL:BC059534 IPI:IPI00493927 RefSeq:NP_775336.1
UniGene:Dr.16883 ProteinModelPortal:Q8JHJ2 STRING:Q8JHJ2
GeneID:286745 KEGG:dre:286745 InParanoid:Q8JHJ2 NextBio:20806420
ArrayExpress:Q8JHJ2 Uniprot:Q8JHJ2
Length = 593
Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
Identities = 181/523 (34%), Positives = 286/523 (54%)
Query: 81 LKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYK-ERWGPEDGV 139
LK+ GF MT +Q A +P + +D+ A TGSGKTLAFVIP LE L K E + V
Sbjct: 24 LKELGFTYMTPVQSACIPLFMSNKDVAAEAVTGSGKTLAFVIPALEILLKREEKLKKMQV 83
Query: 140 GSIIISPTRELADQLFDVL-KAVGKHHNFSAGLLIGGRRDV-DMEKEHVNELNILVCTPG 197
G++II+PTRELA Q+ +V+ + + F+ LLIGG + D+EK NI++ TPG
Sbjct: 84 GALIITPTRELAMQISEVMGRFLQGFPQFTQILLIGGSNPIEDVEKLKTQGANIIIATPG 143
Query: 198 RLLQHMD-ETPNFDCS----QLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSA 252
RL + D + L +L+LDEADR+LD+GF+ +LN I+ LPK R+T LFSA
Sbjct: 144 RLEDMFRRKADGLDLATAVKSLDVLVLDEADRLLDMGFEASLNTILGYLPKQRRTGLFSA 203
Query: 253 TQTKSVQDLARLSLKDPQYLSVHEESVTA-----TPNRLQQTAMIVPLEQKLDMLWSFIK 307
TQT+ ++ L R L++P ++V E+ V A TP +L + E+K + L +F++
Sbjct: 204 TQTQELEKLVRAGLRNPVRITVKEKGVAASSVQKTPAKLSNYYTMCRAEEKFNTLVAFLR 263
Query: 308 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-CEKRSVL 366
H + K LVF ++C V+Y +A + L + + C++G+MK +R I+A F K +L
Sbjct: 264 QHKHEKQLVFFSTCACVEYFGKALEVLVKNVSIHCIHGKMKH-KRNKIFADFRALKSGIL 322
Query: 367 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLE 426
CTDV +RG+D + V+WV+Q D P +S++HR GRTAR + G +++FL P E +
Sbjct: 323 VCTDVMARGIDIPE-VNWVLQYDPPSSASSFVHRCGRTARIGNQGNALVFLLPMEESYVN 381
Query: 427 KLR-EAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEV 485
L K P+ + ++ K + V L A+ + M + +AF++Y+++ + +
Sbjct: 382 FLSINQKCPLQ-SFSSVKDVVDVLPKLKAMALGDRAMFEKGMRAFVSYVQAYAKHECSLI 440
Query: 486 FDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLD-NAEKEDKLMISREKLLPD 544
F + L + L PK+ L +GK P D AE D I R K D
Sbjct: 441 FRIKDLDFAALARGFALLRLPKMPEL---RGKTFP-----DFKAEAIDTDTI-RFK---D 488
Query: 545 NFTEENVDRDILETKDIEDEGKADLLED-VMRATRVKKNKKLK 586
E+ + + E K+ E + + +++ ++KK++K K
Sbjct: 489 KNREKQRQKWLAEQKEKEVPLRKNFIKNKAWSKQKIKKDRKKK 531
>UNIPROTKB|F5H5U2 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:AC055713 EMBL:AC117503
HGNC:HGNC:20085 ChiTaRS:DDX55 IPI:IPI01010332
ProteinModelPortal:F5H5U2 SMR:F5H5U2 Ensembl:ENST00000538744
ArrayExpress:F5H5U2 Bgee:F5H5U2 Uniprot:F5H5U2
Length = 569
Score = 526 (190.2 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
Identities = 128/314 (40%), Positives = 190/314 (60%)
Query: 64 GSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIP 123
GS +P+ + L++ GF MT +Q A++P + +D+ A TGSGKTLAFVIP
Sbjct: 7 GSWESLPVPLHPQVLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIP 66
Query: 124 VLEKLYK-ERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH-NFSAGLLIGGRRD-VD 180
+LE L + E + VG+III+PTRELA Q+ +VL KH FS L IGGR D
Sbjct: 67 ILEILLRREEKLKKSQVGAIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGED 126
Query: 181 MEKEHVNELNILVCTPGRLLQHMD-ETPNFD---CSQ-LQILILDEADRILDVGFKKALN 235
+E+ NI+V TPGRL + D C + L +L+LDEADR+LD+GF+ ++N
Sbjct: 127 VERFKQQGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASIN 186
Query: 236 AIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTA-----TPNRLQQTA 290
I+ LPK R+T LFSATQT+ V++L R L++P +SV E+ V A TP+RL+
Sbjct: 187 TILEFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYY 246
Query: 291 MIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQD 350
M+ ++K + L F++ H K LVF ++C V+Y +A + L G+ +MC++G+MK
Sbjct: 247 MVCKADEKFNQLVHFLRNHKQEKHLVFFSTCACVEYYGKALEVLVKGVKIMCIHGKMKY- 305
Query: 351 RRMAIYAQFCEKRS 364
+R I+ +F + +S
Sbjct: 306 KRNKIFMEFRKLQS 319
Score = 141 (54.7 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
Identities = 54/203 (26%), Positives = 90/203 (44%)
Query: 395 ASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLR-EAKIPIHFTKA--NTKRLQPVSGL 451
++++HR GRTAR GG +++FL P E + L K P+ K NT L P
Sbjct: 319 SAFVHRCGRTARIGHGGSALVFLLPMEESYINFLAINQKCPLQEMKPQRNTADLLPK--- 375
Query: 452 LAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFL 511
L ++ + + + KAF++Y+++ + +F + L + L PK+ L
Sbjct: 376 LKSMALADRAVFEKGMKAFVSYVQAYAKHECNLIFRLKDLDFASLARGFALLRMPKMPEL 435
Query: 512 NQKK-GKMVPVKPVLDNAEKEDKLMIS-REKLLPDNFTEENVDRDILETKDIEDEGKADL 569
K+ VPV D +DK+ R+KLL E+ E+EG+
Sbjct: 436 RGKQFPDFVPVDVNTDTIPFKDKIREKQRQKLLEQQRREKT-----------ENEGRRKF 484
Query: 570 LED-VMRATRVKKNKKLKINVHR 591
+++ + KK KK K+N R
Sbjct: 485 IKNKAWSKQKAKKEKKKKMNEKR 507
Score = 62 (26.9 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 537 SREKLLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNK 583
S++K + + N R E DIEDE +LL D ++KK K
Sbjct: 491 SKQKAKKEKKKKMNEKRKREEGSDIEDEDMEELLNDTRLLKKLKKGK 537
>TAIR|locus:2159527 [details] [associations]
symbol:STRS2 "STRESS RESPONSE SUPPRESSOR 2" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IEP] [GO:0009414 "response
to water deprivation" evidence=IMP] [GO:0009651 "response to salt
stress" evidence=IMP] [GO:0042991 "transcription factor import into
nucleus" evidence=RCA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009651 GO:GO:0009409 GO:GO:0009414 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268799 EMBL:AB006697 EMBL:AJ010473 EMBL:AY035114
EMBL:AY142638 IPI:IPI00534387 PIR:T51348 RefSeq:NP_196479.1
UniGene:At.47465 ProteinModelPortal:Q94C75 SMR:Q94C75 STRING:Q94C75
PRIDE:Q94C75 EnsemblPlants:AT5G08620.1 GeneID:830763
KEGG:ath:AT5G08620 GeneFarm:945 TAIR:At5g08620 InParanoid:Q94C75
OMA:RELACQA PhylomeDB:Q94C75 ProtClustDB:CLSN2687472
Genevestigator:Q94C75 GermOnline:AT5G08620 Uniprot:Q94C75
Length = 563
Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
Identities = 169/502 (33%), Positives = 271/502 (53%)
Query: 39 PLSFPPLGKKEPIGRIGEDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLP 98
PL P + +I + S S Y+ TRFDQ P+S T G++DAGF MT +Q A+LP
Sbjct: 54 PLIKKPASTTPLVTQIAKTSDS-YLSKTRFDQFPLSPLTLKGIEDAGFKTMTVVQEATLP 112
Query: 99 HSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDG----VGSIIISPTRELADQL 154
L G+DIL AKTG+GKT+AF++P +E + K D + +++ PTRELA Q
Sbjct: 113 LILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQA 172
Query: 155 FDVLKAVGKHH-NFSAGLLIGGRR-DVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCS 212
+ K+H + ++IGG + + + + ILV TPGRL H+D T F
Sbjct: 173 AAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFATR 232
Query: 213 QL--QILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLK-DP 269
+ ++L+LDEAD +LD+GF++ + I++ +PK RQTFLFSAT + V+ + ++LK D
Sbjct: 233 LMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQRQTFLFSATVSDEVRQICHVALKRDH 292
Query: 270 QYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNS----KILVFLTSCKQVK 325
++++ +E T ++ Q MI L++ +L+ +K H+ K+++F T+ +
Sbjct: 293 EFVNCVQEGAGETHQKVSQMYMIASLDRHFSLLYGLLKKHITDNVGYKVIIFCTTAMVTR 352
Query: 326 YVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCT-DVASRGLDFNKAVDW 384
V + KL + + ++ R Q R + +F + +S++ T DV++RG+D+ V
Sbjct: 353 LVADLLGKL--SLNVREIHSRKPQSYRTRVSDEFRKSKSIILVTSDVSARGVDYPD-VSL 409
Query: 385 VVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKIPIHFTKANTKR 444
VVQ+ P D YIHR+GRT R G VL L P E L +++ +PI TK++
Sbjct: 410 VVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAPWEEYFLSSVKD--LPI--TKSSLPP 465
Query: 445 L--QPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLS--IDEFSASL 500
+ + V + L+ + A +A++ Y +S QK K D T+L +EFS S+
Sbjct: 466 IDHEAVKKVQKGLIQVEMTNKEAAYQAWLGYYKS---QK-KIARDTTRLVELANEFSRSM 521
Query: 501 GLPMTPKI--RFLNQKKGKMVP 520
GL + P I L + K VP
Sbjct: 522 GLSIPPAIPVNILGKMGLKNVP 543
>TAIR|locus:2153564 [details] [associations]
symbol:AT5G05450 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AB010692 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268803 KO:K14809 EMBL:AJ010469 IPI:IPI00516547
PIR:T51344 RefSeq:NP_196164.1 UniGene:At.23004
ProteinModelPortal:Q9FLB0 SMR:Q9FLB0 PaxDb:Q9FLB0 PRIDE:Q9FLB0
EnsemblPlants:AT5G05450.1 GeneID:830428 KEGG:ath:AT5G05450
GeneFarm:935 TAIR:At5g05450 InParanoid:Q9FLB0 OMA:MDSSANI
PhylomeDB:Q9FLB0 ProtClustDB:CLSN2679231 Genevestigator:Q9FLB0
GermOnline:AT5G05450 Uniprot:Q9FLB0
Length = 593
Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
Identities = 183/552 (33%), Positives = 287/552 (51%)
Query: 58 SFSKYVGSTRFDQL--PISKKTKSGLKDAGFVKMTDIQRASLPHSLCG-RDILGAAKTGS 114
+ +K + TRF L P+S L + F T +Q A++P LC +D+ A TGS
Sbjct: 6 NINKALTETRFSDLEPPLSGDIIEALNQSDFEFCTPVQAATIP-LLCSYKDVAVDAATGS 64
Query: 115 GKTLAFVIPVLEKLYKERWGPEDG--VGSIIISPTRELADQLFDVLKA-VGKHHNFSAGL 171
GKTLAFV+P++E L + P V +IISPTREL+ Q+++V + V N ++ L
Sbjct: 65 GKTLAFVVPLVEILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVL 124
Query: 172 LIGGRR-DVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGF 230
L+GGR DM+ N+L+ TPGRL M+ D L+ILILDEADR+L++GF
Sbjct: 125 LVGGREVKADMKIIEEEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGF 184
Query: 231 KKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTA--------- 281
++ +N I+S+LPK R+T LFSATQT+ V++LA+ L++P + V +S +
Sbjct: 185 QRQVNYIISRLPKQRRTGLFSATQTEGVEELAKAGLRNPVRVEVRAKSKSESSQQLTNSK 244
Query: 282 TPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKY---VFEAFKKLRPGI 338
TP+ L M ++K L + + + K++VF +C V Y V L+ I
Sbjct: 245 TPSGLHLEYMECEADKKSSQLVDLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALK-SI 303
Query: 339 PLMCLYGRMKQDRRMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASY 397
L+ ++G MKQ+ R A F + S L CTDVA+RGLD +D+VVQ D P+D +
Sbjct: 304 SLIPIHGDMKQNARDKALASFTKASSGALLCTDVAARGLDI-PGIDYVVQYDPPQDPNMF 362
Query: 398 IHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLV 457
HR GRTAR GR+++FL P E +E +R ++P+ K + + V ++ + +
Sbjct: 363 NHRAGRTARLGRQGRAIVFLLPKEEAYVEFMRIRRVPLEERKCS-EDASDVIPIIRSAAM 421
Query: 458 KYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGK 517
K + + KAF++++R+ +F L I + + GL P + + Q +
Sbjct: 422 KDRAVMEKGLKAFVSFVRAYKEHHCSFIFRWKDLEIGKLAMGYGLLYLPSMSEVKQHRLS 481
Query: 518 ---MVPVKPV-LDNAEKEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKADLLEDV 573
PV+ V + + +DK REK N R E K +++GK ++
Sbjct: 482 SEGFTPVEGVKFEEIKFKDKY---REKQRQQNLQVRKEKRQ--EEK--KEKGKRKRVDAS 534
Query: 574 MRATRVKKNKKL 585
K ++KL
Sbjct: 535 ASNDPKKASRKL 546
>TAIR|locus:2159517 [details] [associations]
symbol:PDE340 "PIGMENT DEFECTIVE 340" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009220 "pyrimidine ribonucleotide biosynthetic
process" evidence=RCA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009507 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268799 EMBL:AB006697 EMBL:AJ010474
IPI:IPI00522710 PIR:T51747 RefSeq:NP_196478.2 UniGene:At.32551
ProteinModelPortal:Q9FNM7 SMR:Q9FNM7 STRING:Q9FNM7 PaxDb:Q9FNM7
PRIDE:Q9FNM7 EnsemblPlants:AT5G08610.1 GeneID:830762
KEGG:ath:AT5G08610 GeneFarm:949 TAIR:At5g08610 InParanoid:Q9FNM7
OMA:GRNDRNV PhylomeDB:Q9FNM7 ProtClustDB:CLSN2918084
Genevestigator:Q9FNM7 GermOnline:AT5G08610 Uniprot:Q9FNM7
Length = 850
Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
Identities = 162/492 (32%), Positives = 268/492 (54%)
Query: 49 EPIGRIGEDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILG 108
+P G + S S Y+ TRFDQ P+S + +KDAGF MT +Q A+LP L G+D+L
Sbjct: 366 KPTGEHVKTSDS-YLSKTRFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLA 424
Query: 109 AAKTGSGKTLAFVIPVLEKLYKERWGPEDG----VGSIIISPTRELADQLFDVLKAVGKH 164
AKTG+GKT+AF++P +E + K D + +++ PTRELA Q + K+
Sbjct: 425 KAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKY 484
Query: 165 H-NFSAGLLIGGRR-DVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQL--QILILD 220
H + ++IGG + + + N ILV TPGRL H++ T F + ++L+LD
Sbjct: 485 HPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLD 544
Query: 221 EADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLK-DPQYLSVHEESV 279
EAD +LD+GF++ + I++ +PK RQTFLFSAT + V+ + ++LK D ++++ +E
Sbjct: 545 EADHLLDMGFRRDIERIIAAVPKQRQTFLFSATVPEEVRQICHVALKRDHEFINCVQEGS 604
Query: 280 TATPNRLQQTAMIVPLEQKLDMLWSFIKAHL----NSKILVFLTSCKQVKYVFEAFKKLR 335
T ++ Q MI L++ +L +K H+ + K+++F T+ + V + +L
Sbjct: 605 GETHQKVTQMYMIASLDRHFSLLHVLLKEHIADNVDYKVIIFCTTAMVTRLVADLLSQL- 663
Query: 336 PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCT-DVASRGLDFNKAVDWVVQVDCPEDV 394
+ + ++ R Q R + +F + ++++ T DV++RG+D+ V VVQ+ P D
Sbjct: 664 -SLNVREIHSRKPQSYRTRVSDEFRKSKAIILVTSDVSARGVDYPD-VSLVVQMGLPSDR 721
Query: 395 ASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAA 454
YIHR+GRT R G VL L P E + +++ +PI TK+ + P +
Sbjct: 722 EQYIHRLGRTGRKGKEGEGVLLLAPWEEYFMSSVKD--LPI--TKSPLPPIDPEAVKRVQ 777
Query: 455 LLVKYPDMQHR--AQKAFITYLRSVHIQKDKEVFDVTKLS--IDEFSASLGLPMTPKI-R 509
+ +M+++ A +A++ Y +S QK D T+L +EFS S+GL P I +
Sbjct: 778 KGLSQVEMKNKEAAYQAWLGYYKS---QK-MIARDTTRLVELANEFSRSMGLDSPPAIPK 833
Query: 510 FLNQKKG-KMVP 520
+ K G K VP
Sbjct: 834 NVLGKMGLKNVP 845
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 579 (208.9 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 141/379 (37%), Positives = 217/379 (57%)
Query: 44 PLGKKEPIGRIGEDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCG 103
P E I E+S S T F L +S+ G+ + F K T IQ AS+P +L G
Sbjct: 109 PEDSAEAIADFYEES-SPQQTHTSFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLG 167
Query: 104 RDILGAAKTGSGKTLAFVIPVLEKL-YKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162
+DI+ A+TGSGKT A++IP++E+L YK P II++PTRELA Q+++ K +
Sbjct: 168 KDIVAGAQTGSGKTGAYMIPIIERLLYK----PSTSTKVIILTPTRELALQVYEFGKKLS 223
Query: 163 KH-HNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDE 221
H +N + GL +GG E++ +I++ TPGRL+ H+ +P+F +Q+L++DE
Sbjct: 224 HHVNNLNIGLAVGGLNLRQQEEQLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDE 283
Query: 222 ADRILDVGFKKALNAIVSQLPKH-RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVT 280
ADR+L+ GF+ L I+S +PKH RQT LFSAT +QDL +LSL+ P + +
Sbjct: 284 ADRMLEEGFQDELTEILSLIPKHKRQTLLFSATMNTRIQDLIQLSLQKPVRIMIDPPKSV 343
Query: 281 ATPNRLQQTAMIVPLEQ-KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIP 339
A+ LQQ I +Q K +L+ +K ++S+++VF+ K+ + L G+
Sbjct: 344 AS-KLLQQFVRIRKRDQLKPALLYQLLKG-VSSRVVVFVAR-KETAHRLRIVLGLL-GLK 399
Query: 340 LMCLYGRMKQDRRMAIYAQFCEKR-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYI 398
+ L+G + Q++R+ F VL CTD+A+RGLD K ++ V+ D P+ Y+
Sbjct: 400 VSELHGALTQEQRLQNVKNFKSLEVPVLICTDLAARGLDIPK-IELVINYDMPKTFEIYL 458
Query: 399 HRVGRTARYNSGGRSVLFL 417
HRVGRTAR G S+ F+
Sbjct: 459 HRVGRTARAGRDGTSITFV 477
Score = 46 (21.3 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 528 AEKEDKLMISREKLLPDNFTEENVDRDILETK 559
AE+ +KL+ S+E ++ + EE +++L +
Sbjct: 506 AEETNKLLESKESVIDEVLEEEKEAKELLRAE 537
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 579 (208.9 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 141/379 (37%), Positives = 217/379 (57%)
Query: 44 PLGKKEPIGRIGEDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCG 103
P E I E+S S T F L +S+ G+ + F K T IQ AS+P +L G
Sbjct: 109 PEDSAEAIADFYEES-SPQQTHTSFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLG 167
Query: 104 RDILGAAKTGSGKTLAFVIPVLEKL-YKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162
+DI+ A+TGSGKT A++IP++E+L YK P II++PTRELA Q+++ K +
Sbjct: 168 KDIVAGAQTGSGKTGAYMIPIIERLLYK----PSTSTKVIILTPTRELALQVYEFGKKLS 223
Query: 163 KH-HNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDE 221
H +N + GL +GG E++ +I++ TPGRL+ H+ +P+F +Q+L++DE
Sbjct: 224 HHVNNLNIGLAVGGLNLRQQEEQLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDE 283
Query: 222 ADRILDVGFKKALNAIVSQLPKH-RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVT 280
ADR+L+ GF+ L I+S +PKH RQT LFSAT +QDL +LSL+ P + +
Sbjct: 284 ADRMLEEGFQDELTEILSLIPKHKRQTLLFSATMNTRIQDLIQLSLQKPVRIMIDPPKSV 343
Query: 281 ATPNRLQQTAMIVPLEQ-KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIP 339
A+ LQQ I +Q K +L+ +K ++S+++VF+ K+ + L G+
Sbjct: 344 AS-KLLQQFVRIRKRDQLKPALLYQLLKG-VSSRVVVFVAR-KETAHRLRIVLGLL-GLK 399
Query: 340 LMCLYGRMKQDRRMAIYAQFCEKR-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYI 398
+ L+G + Q++R+ F VL CTD+A+RGLD K ++ V+ D P+ Y+
Sbjct: 400 VSELHGALTQEQRLQNVKNFKSLEVPVLICTDLAARGLDIPK-IELVINYDMPKTFEIYL 458
Query: 399 HRVGRTARYNSGGRSVLFL 417
HRVGRTAR G S+ F+
Sbjct: 459 HRVGRTARAGRDGTSITFV 477
Score = 46 (21.3 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 528 AEKEDKLMISREKLLPDNFTEENVDRDILETK 559
AE+ +KL+ S+E ++ + EE +++L +
Sbjct: 506 AEETNKLLESKESVIDEVLEEEKEAKELLRAE 537
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
Identities = 143/393 (36%), Positives = 225/393 (57%)
Query: 45 LGKKEPIGRIGEDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGR 104
L KK+ + E + V F +L +S+ + G++K + IQ+A+LPH+L G+
Sbjct: 23 LTKKKVVTEEIEKDDEEDVKEKSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGK 82
Query: 105 DILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKH 164
D++G A+TGSGKT AF IPVL+ L P+ ++++PTRELA Q+ +A+G
Sbjct: 83 DVIGLAETGSGKTGAFAIPVLQSLLDH---PQ-AFFCLVLTPTRELAFQIGQQFEALGSG 138
Query: 165 HNFSAGLLIGGRRDVDMEKEHV---NELNILVCTPGRLLQHMDETPNFDCSQLQILILDE 221
A +++GG VDM + + +I+V TPGRL+ H++ T F+ L+ LI+DE
Sbjct: 139 IGLIAAVIVGG---VDMAAQAMALARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMDE 195
Query: 222 ADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTA 281
ADRIL++ F+ L+ I+ +P+ R+T+LFSAT TK V L R SL+DP +SV S
Sbjct: 196 ADRILNMDFEVELDKILKVIPRERRTYLFSATMTKKVSKLERASLRDPARVSV--SSRYK 253
Query: 282 TPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLM 341
T + L+Q + VP + K L + H + +VF +C + ++L G+ +
Sbjct: 254 TVDNLKQHYIFVPNKYKETYLVYLLNEHAGNSAIVFCATCATTMQIAVMLRQL--GMQAV 311
Query: 342 CLYGRMKQDRRMAIYAQFCEK-RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHR 400
L+G+M Q++R+ +F K R +L CTDVA+RGLD VD V+ D P Y+HR
Sbjct: 312 PLHGQMSQEKRLGSLNKFKSKAREILVCTDVAARGLDIPH-VDMVINYDMPSQSKDYVHR 370
Query: 401 VGRTARYNSGGRSVLFLTPTEMKMLEKLREAKI 433
VGRTAR G ++ +T +++ +K+ EA +
Sbjct: 371 VGRTARAGRSGIAITVVTQYDVEAYQKI-EANL 402
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 139/372 (37%), Positives = 218/372 (58%)
Query: 66 TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVL 125
T F +L +++ G+ K T IQ ++P +L GRD++G A+TGSGKT AF +PVL
Sbjct: 79 TSFKELGVTEVLCEACDQLGWKKPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFAVPVL 138
Query: 126 EKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEH 185
+ L + +++++PTRELA Q+ + A+G +++GG +DM +
Sbjct: 139 QSLL----ACAQRLHTLVLTPTRELAFQIAEQFDALGSSIGVKTAVIVGG---IDMMSQA 191
Query: 186 V---NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP 242
+ + ++++ TPGRL+ HM+ T F+ L+ L++DEADRIL++ F+ ++ I+ +P
Sbjct: 192 LVLAKKPHVVIATPGRLIDHMENTKGFNLRALKYLVMDEADRILNMDFESEVDKILKVIP 251
Query: 243 KHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDML 302
+ R+TFLFSAT TK VQ L R +L+DP SV S AT ++LQQ + +P + K L
Sbjct: 252 RDRRTFLFSATMTKKVQKLQRAALQDPVKCSV--SSKYATVDKLQQFYIFIPSKYKDCYL 309
Query: 303 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK 362
S + + +VF +C + V + L GI + L+G+M Q++R+ +F K
Sbjct: 310 VSILNELAGNSFMVFCGTCNNTQRVALLLRNL--GITAIPLHGQMSQNKRLGALNKFKSK 367
Query: 363 -RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 421
RSVL TDVASRGLD VD V+ D P YIHRVGRTAR G+S+ F+T +
Sbjct: 368 SRSVLLATDVASRGLDIPH-VDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYD 426
Query: 422 MKMLEKLREAKI 433
+++ +++ EA I
Sbjct: 427 VELFQRI-EALI 437
>POMBASE|SPBC24C6.02 [details] [associations]
symbol:SPBC24C6.02 "ATP-dependent RNA helicase Spb4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
PomBase:SPBC24C6.02 GO:GO:0005524 GO:GO:0005730 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268803 KO:K14809
OMA:CACVEYW OrthoDB:EOG46MFT3 PIR:T39966 RefSeq:NP_595956.1
ProteinModelPortal:O74764 STRING:O74764 EnsemblFungi:SPBC24C6.02.1
GeneID:2540598 KEGG:spo:SPBC24C6.02 NextBio:20801723 Uniprot:O74764
Length = 606
Score = 564 (203.6 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
Identities = 152/469 (32%), Positives = 255/469 (54%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F + I K K+ + GF KMT +Q ++P L +D++ A TGSGKTLA+++P +K
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFS--------AGLLIGGRRDV 179
+ + R E G+G++I++PTRELA Q+F+V K + + S A + IGG+ +
Sbjct: 63 VTR-RDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTL 121
Query: 180 DMEKEHVNELN--ILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAI 237
+ E N +++ TPGRL + + + L+ILILDEAD ++D+GF++ L +I
Sbjct: 122 TNDLASFREKNPSVVIGTPGRLNEMLS---HISSKHLEILILDEADTLIDMGFQRTLQSI 178
Query: 238 VSQLPKHRQTFLFSATQTKSVQDLARLS-LKDPQYLSVHEESV---TATPNRLQQTAMIV 293
+SQLPK R+T LFSAT +V +++ L++ +SV S T TP+ L ++++
Sbjct: 179 ISQLPKQRRTGLFSATMNDTVSSFLKIAGLRNSVRVSVTVTSKKIDTRTPSSLAIQSLVI 238
Query: 294 PLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRM 353
P K+ + + K +VF +SC V+Y F + ++ L+G+ Q R
Sbjct: 239 PPIYKVQCMIHLLCTIEYEKAIVFFSSCASVEYFNSLFLTYKLPFEIVALHGQQVQSNRS 298
Query: 354 AIYAQF--CEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGG 411
+ +F K++VLF TD+ASRGLD VD+V+Q+D P D S+ HR GR R G
Sbjct: 299 RNFEKFKKSNKKTVLFTTDIASRGLDIPN-VDFVLQLDPPLDPKSFSHRCGRAGRAGRAG 357
Query: 412 RSVLFLTP-TEMKMLEKLREAKIPIHFTKANT-------KRLQPVSGLLAALLVKYPDMQ 463
+++ L E + E LR K+PI T+ +T RL+ ++ L ++ K D+
Sbjct: 358 VAIVLLNDGREEEYEELLRVRKVPI--TRIDTPIEALDLSRLKVLTHELRKIVSKDRDLY 415
Query: 464 HRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFS---ASLGLPMTPKIR 509
+ +AF++++R+ +F + L + + + A L LP P+++
Sbjct: 416 DKGLRAFVSHVRAYTKHHASFIFRIKDLDLGQLATAYALLHLPKMPELK 464
Score = 43 (20.2 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
Identities = 18/75 (24%), Positives = 37/75 (49%)
Query: 512 NQKKGKMVPVKPVLDNAEKEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKADLLE 571
N ++ K K L A+K + +++++ +E + D++ D E + ++L E
Sbjct: 530 NTRREKRKSKKEFL-KAQKNEASNNLKQEIVSKAGAQETENDDLI---DEESDALSELEE 585
Query: 572 DVMRATRVKKNKKLK 586
D + +KK+KK K
Sbjct: 586 DYRQ---LKKSKKRK 597
>UNIPROTKB|Q96GQ7 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
Length = 796
Score = 556 (200.8 bits), Expect = 4.7e-56, Sum P(2) = 4.7e-56
Identities = 138/395 (34%), Positives = 219/395 (55%)
Query: 47 KKEPIGRIGEDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDI 106
K + G ED+ S+Y + F + +S+ + GF + T IQ+A +P L G+DI
Sbjct: 200 KGQEAGGFFEDA-SQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDI 258
Query: 107 LGAAKTGSGKTLAFVIPVLEKL-YKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH 165
A TG+GKT AF +PVLE+L YK R P V +++ PTREL Q+ V + + +
Sbjct: 259 CACAATGTGKTAAFALPVLERLIYKPRQAPVTRV--LVLVPTRELGIQVHSVTRQLAQFC 316
Query: 166 NFSAGLLIGGRRDVDMEKEHVNEL-NILVCTPGRLLQHMDETPNFDCSQLQILILDEADR 224
N + L +GG DV ++ + +IL+ TPGRL+ H+ P+F S +++LILDEADR
Sbjct: 317 NITTCLAVGGL-DVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADR 375
Query: 225 ILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPN 284
+LD F++ + I+ HRQT LFSAT T V+DLA +SLK+P + V+ + A P
Sbjct: 376 MLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVA-PF 434
Query: 285 RLQQTAMIVPLEQ--KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMC 342
Q+ I P + + ++ + + +++F + KQ + + G+ +
Sbjct: 435 LRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLM--GLQVGE 492
Query: 343 LYGRMKQDRRMAIYAQFCEKR-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRV 401
L+G + Q +R+ +F +++ +L TDVA+RGLD + V V+ P + Y+HRV
Sbjct: 493 LHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDI-EGVKTVINFTMPNTIKHYVHRV 551
Query: 402 GRTARYNSGGRSVLFLTPTEMKMLEKL-REAKIPI 435
GRTAR GRSV + E KML+++ + AK P+
Sbjct: 552 GRTARAGRAGRSVSLVGEDERKMLKEIVKAAKAPV 586
Score = 41 (19.5 bits), Expect = 4.7e-56, Sum P(2) = 4.7e-56
Identities = 16/82 (19%), Positives = 39/82 (47%)
Query: 515 KGKMVPVKPVL---DNAEKEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKADLLE 571
K +++P +L D EK +K + + +L + + + I K + ++GK +++
Sbjct: 587 KARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQ 646
Query: 572 DVMRATRVKKNKKLKINVHRPL 593
+ R+ K ++ K + + L
Sbjct: 647 EPERSWFQTKEERKKEKIAKAL 668
>MGI|MGI:2385884 [details] [associations]
symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2385884 GO:GO:0005524
GO:GO:0005634 EMBL:CH466551 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH OrthoDB:EOG4NVZJV
EMBL:AK134274 EMBL:AK138442 EMBL:AL591711 EMBL:BC011321
EMBL:BC024730 EMBL:BC026381 IPI:IPI00122038 IPI:IPI00230236
RefSeq:NP_694705.2 UniGene:Mm.295031 ProteinModelPortal:Q921N6
SMR:Q921N6 PhosphoSite:Q921N6 PaxDb:Q921N6 PRIDE:Q921N6
Ensembl:ENSMUST00000018143 Ensembl:ENSMUST00000150571 GeneID:228889
KEGG:mmu:228889 UCSC:uc008nza.1 InParanoid:Q3UUG2 NextBio:379240
Bgee:Q921N6 CleanEx:MM_DDX27 Genevestigator:Q921N6
GermOnline:ENSMUSG00000017999 Uniprot:Q921N6
Length = 760
Score = 552 (199.4 bits), Expect = 4.8e-56, Sum P(2) = 4.8e-56
Identities = 140/395 (35%), Positives = 218/395 (55%)
Query: 47 KKEPIGRIGEDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDI 106
K + G ED+ S+Y S F + +S+ + GF + T IQ+A +P L G+DI
Sbjct: 166 KGQAAGGFFEDA-SEYDKSLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDI 224
Query: 107 LGAAKTGSGKTLAFVIPVLEKL-YKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH 165
A TG+GKT AF +PVLE+L YK R V +++ PTREL Q+ V K + +
Sbjct: 225 CACAATGTGKTAAFALPVLERLIYKPRQAAVTRV--LVLVPTRELGIQVHSVTKQLAQFC 282
Query: 166 NFSAGLLIGGRRDVDMEKEHVNEL-NILVCTPGRLLQHMDETPNFDCSQLQILILDEADR 224
+ + L +GG DV ++ + +IL+ TPGRL+ H+ P+F S +++LILDEADR
Sbjct: 283 SITTCLAVGGL-DVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADR 341
Query: 225 ILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPN 284
+LD F++ + I+ HRQT LFSAT T V+DLA +SLK+P + V+ + A P
Sbjct: 342 MLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVA-PF 400
Query: 285 RLQQTAMIVPLEQ--KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMC 342
Q+ I P + + ++ + + +++F + KQ + L G+ +
Sbjct: 401 LRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLL--GLQVGE 458
Query: 343 LYGRMKQDRRMAIYAQFCEKR-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRV 401
L+G + Q +R+ +F +++ +L TDVA+RGLD + V V+ P V Y+HRV
Sbjct: 459 LHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDI-EGVKTVINFTMPNTVKHYVHRV 517
Query: 402 GRTARYNSGGRSVLFLTPTEMKMLEKL-REAKIPI 435
GRTAR GRSV + E KML+++ + AK P+
Sbjct: 518 GRTARAGRAGRSVSLVGEEERKMLKEIVKAAKAPV 552
Score = 43 (20.2 bits), Expect = 4.8e-56, Sum P(2) = 4.8e-56
Identities = 27/91 (29%), Positives = 37/91 (40%)
Query: 3 KSKRKPNRKAVRSMEIEEIELLNSWIDSQKPESGTNPLSFPPLGKKEPIGRIGEDSFSKY 62
+ +RK K +S ++EE E DS + NP G+ E G EDS + Y
Sbjct: 94 RKRRKAEDKEAKSGKVEEKE---GQADSDL-KGQENP------GEDEA-GSKDEDSETDY 142
Query: 63 VGS-----TRFDQLPIS--KKTKSGLKDAGF 86
T+ D L + KK K G GF
Sbjct: 143 SSEDEEILTKADTLKVKEKKKKKKGQAAGGF 173
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 144/430 (33%), Positives = 234/430 (54%)
Query: 1 MKKSKRKPNRKAVRSMEIEEIELLNSWIDSQKPESGTNPLSFPPLGKKEPIGRIGEDSFS 60
+K+ +K +K +++ E++E LL + ++ E N + KK E+
Sbjct: 65 VKEEIKKEIKKEIKNEELDEDSLLEKEEEEKEIEEFINNTN----QKKS------EEEEK 114
Query: 61 KYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAF 120
KY T F+ L + + GF K +IQR S+P +L GRDI+G A+TGSGKT AF
Sbjct: 115 KYENVT-FESLGVHPQIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAF 173
Query: 121 VIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVD 180
VIPVL+KL + P+ G+ + ++PTRELA Q+ D A+G +L+GG +
Sbjct: 174 VIPVLQKLLE---APQ-GLFCLALAPTRELAYQIADQFNAIGSTIGVKTCVLVGGIDSMS 229
Query: 181 MEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ 240
+ +++V +PGR+L H++ T F+ ++ I+DEADR+ F++ +N I+
Sbjct: 230 QSLALAKKPHVVVGSPGRVLHHLEHTKGFNLRSIKYFIMDEADRLFSADFEEEVNNILKV 289
Query: 241 LPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLD 300
+PK R T+LFSAT T V L R SL +P + V S T + L Q + VP + K D
Sbjct: 290 IPKERNTYLFSATMTSKVAKLQRASLVNP--VKVQVASKYQTVDTLLQQYLFVPFKYK-D 346
Query: 301 MLWSFIKAHLNSKI-LVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF 359
++I L + ++F ++C + + L G + + G M Q +R+A +F
Sbjct: 347 CYLAYILNELAGNLTIIFTSTCASSTKIAMMLRNL--GFGAIPINGDMDQGKRLASLNKF 404
Query: 360 CE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 418
+ +S+L TDVA+RGLD +VD V+ D P + Y+HRVGRTAR + GR++ +T
Sbjct: 405 KQGTKSILVATDVAARGLDI-PSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVT 463
Query: 419 PTEMKMLEKL 428
+++M +++
Sbjct: 464 QYDVEMYQRI 473
>TAIR|locus:2032910 [details] [associations]
symbol:RH36 "RNA helicase 36" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] [GO:0009791 "post-embryonic development"
evidence=IMP] [GO:0090406 "pollen tube" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0009561 "megagametogenesis"
evidence=IMP] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
GO:GO:0009791 GO:GO:0009561 EMBL:AC006341 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
HOGENOM:HOG000268802 OMA:EVRTVEQ GO:GO:0090406 IPI:IPI00521131
PIR:G86297 RefSeq:NP_173078.1 UniGene:At.51634
ProteinModelPortal:Q9SA27 SMR:Q9SA27 PaxDb:Q9SA27 PRIDE:Q9SA27
EnsemblPlants:AT1G16280.1 GeneID:838197 KEGG:ath:AT1G16280
KEGG:dosa:Os07t0633500-00 GeneFarm:1012 TAIR:At1g16280
InParanoid:Q9SA27 PhylomeDB:Q9SA27 ProtClustDB:CLSN2679781
Genevestigator:Q9SA27 GermOnline:AT1G16280 Uniprot:Q9SA27
Length = 491
Score = 534 (193.0 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
Identities = 137/410 (33%), Positives = 217/410 (52%)
Query: 28 IDSQKPESGTNPLSFPPLGKKEPIGRIGEDSFSKYVGSTRFDQLPISKKTKSGLKDAGFV 87
I SQK +S N F P D+ S +T F+ L +++ K+ G
Sbjct: 28 IQSQKLDSDQNTPQFEKFTNPNP----SSDTTS----ATNFEGLGLAEWAVETCKELGMR 79
Query: 88 KMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPT 147
K T +Q +P L GRD+LG A+TGSGKT AF +P+L +L ++ +G V +++++PT
Sbjct: 80 KPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYG----VFALVVTPT 135
Query: 148 RELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETP 207
RELA QL + KA+G N +++GG + V+ +I++ TPGR+ ++ P
Sbjct: 136 RELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIKVLLENNP 195
Query: 208 NFD--CSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLS 265
+ S+ + L+LDEADR+LDVGF+ L I LPK RQT LFSAT T ++Q L S
Sbjct: 196 DVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTLLFSATMTSNLQALLEHS 255
Query: 266 LKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSK----ILVFLTSC 321
+ +E T + L Q + + K ++ I + + K ++F+++C
Sbjct: 256 SNKAYFYEAYEGLKTV--DTLTQQFIFEDKDAK-ELYLVHILSQMEDKGIRSAMIFVSTC 312
Query: 322 KQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNK 380
+ + + +L + + ++ Q R++ ++F K +L TDVASRGLD
Sbjct: 313 RTCQRLSLMLDELE--VENIAMHSLNSQSMRLSALSKFKSGKVPILLATDVASRGLDI-P 369
Query: 381 AVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLRE 430
VD V+ D P D Y+HRVGRTAR GG +V +T T++K++ K+ E
Sbjct: 370 TVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEE 419
Score = 49 (22.3 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 508 IRFLNQKKGK-MVPV--KPVLDNAE--KEDKLM-ISREKLLPDNFTEENVDRDILETKDI 561
I + ++ GK M P K + D+ E K K ++ K+L + F ++ DR L+ K +
Sbjct: 414 IHKIEEEVGKKMEPYNKKVITDSLEVTKVSKAKRVAMMKMLDNGFEDKVKDRRKLKRKTL 473
Query: 562 EDEG 565
D+G
Sbjct: 474 ADKG 477
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 130/376 (34%), Positives = 213/376 (56%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F L ++ G+ K T IQ ++P +L GRDI+G A+TGSGKT AF +P+L
Sbjct: 52 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 111
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
L + P+ + +++++PTRELA Q+ + +A+G + +++GG +
Sbjct: 112 LLET---PQR-LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 167
Query: 188 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQT 247
+ +I++ TPGRL+ H++ T F+ L+ L++DEADRIL++ F+ ++ I+ +P+ R+T
Sbjct: 168 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 227
Query: 248 FLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIK 307
FLFSAT TK VQ L R +LK+P +V S T +LQQ + +P + K L +
Sbjct: 228 FLFSATMTKKVQKLQRAALKNPVKCAV--SSKYQTVEKLQQYYLFIPSKFKDTYLVYILN 285
Query: 308 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK-RSVL 366
+ ++F ++C + + L G + L+G+M Q +R+ +F K RS+L
Sbjct: 286 ELAGNSFMIFCSTCNNTQRTALLLRNL--GFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 343
Query: 367 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLE 426
TDVASRGLD VD VV D P YIHRVGRTAR G+++ F+T ++++ +
Sbjct: 344 LATDVASRGLDIPH-VDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 402
Query: 427 KLREA---KIPIHFTK 439
++ K+P+ T+
Sbjct: 403 RIEHLIGKKLPVFPTQ 418
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 138/437 (31%), Positives = 233/437 (53%)
Query: 2 KKSKRKPNRKAVRSMEIEEIELLNSWIDSQKPESGTNPLSFPPLGKKEPIGRIGEDSFSK 61
KK K ++A++ + ++ + + + ES LS I I D+ K
Sbjct: 65 KKLAEKIKQQALQKQQKQQKQQEQENANHNQTESS---LSSSSSTTSSSITTIDPDAELK 121
Query: 62 YVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFV 121
+ F +L + ++ F K T IQ ++PH+L G+DI+G A+TGSGKT AF
Sbjct: 122 F---KTFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFA 178
Query: 122 IPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDM 181
IP+L+ L W + +++++PTREL Q+ D A+G + ++GG +D
Sbjct: 179 IPILQSL----WHAQQPYFALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQ 234
Query: 182 EKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 241
++ + + +++V TPGR++ H++ T F L+ L++DEADR+LD+ F AL+ I+ +
Sbjct: 235 ARDLMRKPHVIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVI 294
Query: 242 PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDM 301
P R T+LFSAT T ++ L R SL +P ++V + TA + L Q+ M+V K +
Sbjct: 295 PIKRTTYLFSATMTNKIEKLQRASLHNPVRVAVSSKYQTA--DNLVQSMMLVNDGYKNTI 352
Query: 302 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-C 360
L + + I+VF + + + L G + L+G++ Q +R+ +F
Sbjct: 353 LIHLLNEFMGKSIIVFTRTVAHAQRTALLARIL--GFNAVPLHGQLSQSQRLGSLNKFKS 410
Query: 361 EKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 420
+ ++L TDVA+RGLD +VD V+ D P D +YIHRVGRTAR G+S+ +T
Sbjct: 411 NQANILVATDVAARGLDI-PSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQY 469
Query: 421 EMKM---LEKLREAKIP 434
+++M +E + K+P
Sbjct: 470 DLEMYLRIESVLGKKLP 486
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 130/376 (34%), Positives = 212/376 (56%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F L ++ G+ K T IQ ++P +L GRDI+G A+TGSGKT AF +P+L
Sbjct: 28 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 87
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
L + P+ + +++++PTRELA Q+ + +A+G +++GG +
Sbjct: 88 LLET---PQR-LFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK 143
Query: 188 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQT 247
+ +I++ TPGRL+ H++ T F+ L+ L++DEADRIL++ F+ ++ I+ +P+ R+T
Sbjct: 144 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 203
Query: 248 FLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIK 307
FLFSAT TK VQ L R +LK+P +V S T +LQQ + +P + K L +
Sbjct: 204 FLFSATMTKKVQKLQRAALKNPVKCAV--SSKYQTVEKLQQYYLFIPSKFKDTYLVYILN 261
Query: 308 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK-RSVL 366
+ ++F ++C + + L G + L+G+M Q +R+ +F K RS+L
Sbjct: 262 ELAGNSFMIFCSTCNNTQRTALLLRNL--GFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 319
Query: 367 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLE 426
TDVASRGLD VD VV D P YIHRVGRTAR G+++ F+T ++++ +
Sbjct: 320 LATDVASRGLDIPH-VDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 378
Query: 427 KLREA---KIPIHFTK 439
++ K+P+ T+
Sbjct: 379 RIEHLIGKKLPVFPTQ 394
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 130/376 (34%), Positives = 212/376 (56%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F L ++ G+ K T IQ ++P +L GRDI+G A+TGSGKT AF +P+L
Sbjct: 26 FKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 85
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
L + P+ + +++++PTRELA Q+ + +A+G +++GG +
Sbjct: 86 LLET---PQR-LFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK 141
Query: 188 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQT 247
+ +I++ TPGRL+ H++ T F+ L+ L++DEADRIL++ F+ ++ I+ +P+ R+T
Sbjct: 142 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201
Query: 248 FLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIK 307
FLFSAT TK VQ L R +LK+P +V S T +LQQ + +P + K L +
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAV--SSKYQTVEKLQQYYLFIPSKFKDTYLVYILN 259
Query: 308 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK-RSVL 366
+ ++F ++C + + L G + L+G+M Q +R+ +F K RS+L
Sbjct: 260 ELAGNSFMIFCSTCNNTQRTALLLRNL--GFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317
Query: 367 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLE 426
TDVASRGLD VD VV D P YIHRVGRTAR G+++ F+T ++++ +
Sbjct: 318 LATDVASRGLDIPH-VDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376
Query: 427 KLREA---KIPIHFTK 439
++ K+P+ T+
Sbjct: 377 RIEHLIGKKLPVFPTQ 392
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 130/376 (34%), Positives = 212/376 (56%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F L ++ G+ K T IQ ++P +L GRDI+G A+TGSGKT AF +P+L
Sbjct: 26 FKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 85
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
L + P+ + +++++PTRELA Q+ + +A+G +++GG +
Sbjct: 86 LLET---PQR-LFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK 141
Query: 188 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQT 247
+ +I++ TPGRL+ H++ T F+ L+ L++DEADRIL++ F+ ++ I+ +P+ R+T
Sbjct: 142 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201
Query: 248 FLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIK 307
FLFSAT TK VQ L R +LK+P +V S T +LQQ + +P + K L +
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAV--SSKYQTVEKLQQYYLFIPSKFKDTYLVYILN 259
Query: 308 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK-RSVL 366
+ ++F ++C + + L G + L+G+M Q +R+ +F K RS+L
Sbjct: 260 ELAGNSFMIFCSTCNNTQRTALLLRNL--GFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317
Query: 367 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLE 426
TDVASRGLD VD VV D P YIHRVGRTAR G+++ F+T ++++ +
Sbjct: 318 LATDVASRGLDIPH-VDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376
Query: 427 KLREA---KIPIHFTK 439
++ K+P+ T+
Sbjct: 377 RIEHLIGKKLPVFPTQ 392
>UNIPROTKB|F1NQV5 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
Length = 758
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 170/550 (30%), Positives = 280/550 (50%)
Query: 46 GKKEPIGRIGEDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRD 105
G+KE ED+ S+Y + F + +S+ + GF + T IQ+A +P L G+D
Sbjct: 162 GQKEAESFF-EDA-SEYDDNLSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKD 219
Query: 106 ILGAAKTGSGKTLAFVIPVLEKL-YKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKH 164
I A TG+GKT AF++PVLE+L YK R P V +++ PTREL Q+ V K + +
Sbjct: 220 ICACAATGTGKTAAFILPVLERLIYKPRQAPITRV--LVLVPTRELGIQVHSVTKQLAQF 277
Query: 165 HNFSAGLLIGGRRDVDMEKEHVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEAD 223
+ + L +GG DV ++ + +IL+ TPGRL+ H+ P+F S +++LILDEAD
Sbjct: 278 SSVTTCLAVGGL-DVKTQEAALRSGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEAD 336
Query: 224 RILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATP 283
R+LD F++ + I+ +HRQT LFSAT T+ V+DLA +SLK+P + V+ + A P
Sbjct: 337 RMLDEYFEEQMKEIIRLCSRHRQTMLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVA-P 395
Query: 284 NRLQQTAMIVPLEQ--KLDMLWSFIKAHLNSKILVFLTSCKQVK--YVFEAFKKLRPGIP 339
Q+ I P + + ++ + + +++F + KQ ++ LR G
Sbjct: 396 FLRQEFIRIRPNREGDREAIVSALLTRTFPDHVMLFTQTKKQAHRMHILLGLMGLRVGE- 454
Query: 340 LMCLYGRMKQDRRMAIYAQFCEKR-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYI 398
L+G + Q +R+ +F +++ +L TDVA+RGLD + V V+ P Y+
Sbjct: 455 ---LHGNLSQAQRLEALRRFKDEQIDILVATDVAARGLDI-EGVKTVINFTMPNTTKHYV 510
Query: 399 HRVGRTARYNSGGRSVLFLTPTEMKMLEKL-REAKIPIHFTKANTKRLQPVSGLLAALLV 457
HRVGRTAR GRSV + E KML+++ + AK P+ KA R+ P +L
Sbjct: 511 HRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAAKTPV---KA---RILPQDVILK-FRE 563
Query: 458 KYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGK 517
K +++ +Q+ + + K ++E + F +++ K
Sbjct: 564 KIENLEKDVYAVLCLEREEREMQQSEAQINKAKKQLEEGKQEAATKGVERSWFQTREERK 623
Query: 518 MVPVKPVLDNAEKEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRAT 577
K L A +E L + R K F ++ R T E+ + ++L+ M A
Sbjct: 624 ----KEKLAKALQEFDLAL-RGKKKRKKFMQDT-QRKAQMTP--EERSQFEILKSQMYAE 675
Query: 578 RV-KKNKKLK 586
R+ K+N+++K
Sbjct: 676 RLAKRNRRVK 685
>UNIPROTKB|F1Q073 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
Length = 767
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 139/395 (35%), Positives = 219/395 (55%)
Query: 47 KKEPIGRIGEDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDI 106
K + G ED+ S+Y + F + +S+ + GF + T IQ+A +P L G+DI
Sbjct: 169 KGQETGGFFEDA-SQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDI 227
Query: 107 LGAAKTGSGKTLAFVIPVLEKL-YKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH 165
A TG+GKT AF +PVLE+L YK R P V +++ PTREL Q+ V K + +
Sbjct: 228 CACAATGTGKTAAFALPVLERLIYKPRQSPVTRV--LVLVPTRELGIQVHSVTKQLAQFC 285
Query: 166 NFSAGLLIGGRRDVDMEKEHVNEL-NILVCTPGRLLQHMDETPNFDCSQLQILILDEADR 224
N + L +GG DV ++ + +IL+ TPGRL+ H+ P+F S +++LILDEADR
Sbjct: 286 NITTCLAVGGL-DVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADR 344
Query: 225 ILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPN 284
+LD F++ + I+ HRQT LFSAT T V+DLA +SLK+P + V+ + A P
Sbjct: 345 MLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVA-PF 403
Query: 285 RLQQTAMIVPLEQ--KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMC 342
Q+ I P + + ++ + + +++F + KQ + + G+ +
Sbjct: 404 LRQEFVRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLM--GLQVGE 461
Query: 343 LYGRMKQDRRMAIYAQFCEKR-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRV 401
L+G + Q +R+ +F +++ +L TDVA+RGLD + V V+ P + Y+HRV
Sbjct: 462 LHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDI-EGVKTVINFTMPNTIKHYVHRV 520
Query: 402 GRTARYNSGGRSVLFLTPTEMKMLEKL-REAKIPI 435
GRTAR GRSV + E KML+++ + AK P+
Sbjct: 521 GRTARAGRAGRSVSLVGEEERKMLKEIVKAAKAPV 555
>UNIPROTKB|J9P9C6 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
Length = 788
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 139/395 (35%), Positives = 219/395 (55%)
Query: 47 KKEPIGRIGEDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDI 106
K + G ED+ S+Y + F + +S+ + GF + T IQ+A +P L G+DI
Sbjct: 190 KGQETGGFFEDA-SQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDI 248
Query: 107 LGAAKTGSGKTLAFVIPVLEKL-YKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH 165
A TG+GKT AF +PVLE+L YK R P V +++ PTREL Q+ V K + +
Sbjct: 249 CACAATGTGKTAAFALPVLERLIYKPRQSPVTRV--LVLVPTRELGIQVHSVTKQLAQFC 306
Query: 166 NFSAGLLIGGRRDVDMEKEHVNEL-NILVCTPGRLLQHMDETPNFDCSQLQILILDEADR 224
N + L +GG DV ++ + +IL+ TPGRL+ H+ P+F S +++LILDEADR
Sbjct: 307 NITTCLAVGGL-DVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADR 365
Query: 225 ILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPN 284
+LD F++ + I+ HRQT LFSAT T V+DLA +SLK+P + V+ + A P
Sbjct: 366 MLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVA-PF 424
Query: 285 RLQQTAMIVPLEQ--KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMC 342
Q+ I P + + ++ + + +++F + KQ + + G+ +
Sbjct: 425 LRQEFVRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLM--GLQVGE 482
Query: 343 LYGRMKQDRRMAIYAQFCEKR-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRV 401
L+G + Q +R+ +F +++ +L TDVA+RGLD + V V+ P + Y+HRV
Sbjct: 483 LHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDI-EGVKTVINFTMPNTIKHYVHRV 541
Query: 402 GRTARYNSGGRSVLFLTPTEMKMLEKL-REAKIPI 435
GRTAR GRSV + E KML+++ + AK P+
Sbjct: 542 GRTARAGRAGRSVSLVGEEERKMLKEIVKAAKAPV 576
>WB|WBGene00013983 [details] [associations]
symbol:ZK512.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0017038 "protein import" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000003 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:Z22177 eggNOG:COG0513 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HOGENOM:HOG000268803 KO:K14809 PIR:B88549 PIR:S40763
RefSeq:NP_001254980.1 ProteinModelPortal:P34640 SMR:P34640
STRING:P34640 PaxDb:P34640 EnsemblMetazoa:ZK512.2a.1
EnsemblMetazoa:ZK512.2a.2 GeneID:176292 KEGG:cel:CELE_ZK512.2
UCSC:ZK512.2 CTD:176292 WormBase:ZK512.2
GeneTree:ENSGT00550000074969 InParanoid:P34640 OMA:HEKKVET
NextBio:891956 Uniprot:P34640
Length = 578
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 141/494 (28%), Positives = 258/494 (52%)
Query: 83 DAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSI 142
D + TD+Q S H L D++ + TGSGKTLAFV+P++ + + P D +G++
Sbjct: 26 DKSYKSFTDVQVLSGTHLLNLSDVVVESPTGSGKTLAFVLPMMRMIQNAKLQPAD-IGAL 84
Query: 143 IISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRR-DVDMEKEHVNELNILVCTPGRLLQ 201
I+SP+REL Q+ V++ + N + + GG++ D +++ +NILV TPGRL Q
Sbjct: 85 ILSPSRELCSQIVSVIQPFAEKLNLTVETVTGGQKVDKNIKMFKNKNVNILVATPGRLFQ 144
Query: 202 HMDETPNFDCSQ---LQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSV 258
+ + LQ+L++DEADR ++ F+ + I+S +PK R+T LFSATQ K
Sbjct: 145 IIQHEKTLIARKMRTLQLLVIDEADRFNEIQFEDHMREILSCIPKQRRTGLFSATQVKEE 204
Query: 259 QDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFL 318
DL L++ + + V +E +A P+ L+ + ++K + FI+ + KIL+F
Sbjct: 205 DDLMVFGLRNAKQVKVAQERNSAAPSTLKNYYVECRADEKTSVCLEFIRQRTDKKILIFF 264
Query: 319 TSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS-VLFCTDVASRGLD 377
SC V+Y ++ F++ PL ++G+ R + F + + V+ TDV +RG+D
Sbjct: 265 PSCNSVRYFYKIFERCLGKRPLFAVHGKCSNPHRASQIKAFSDSTNGVMISTDVMARGID 324
Query: 378 FNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLE--------KLR 429
+ +DWV+Q D P+ + ++HR GRTAR G +++ + ++ + KL
Sbjct: 325 ISD-IDWVIQFDLPKHSSWFVHRAGRTARCGREGNALILIASEQLAYVNFLDNHEKVKLD 383
Query: 430 EAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVT 489
E K+P + N+++ + + + + V + +AF++++ S + +
Sbjct: 384 EIKVPTN----NSRKSEELRQKMIKIQVSDRAILEAGTRAFVSHVESYAKHDCHLICSLD 439
Query: 490 KLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNAE---KEDKLMISREKLLPDNF 546
L++ + S L PK+R L+Q+K + + ++ +E + KL +RE ++ +
Sbjct: 440 DLNVVGLANSYALLRLPKMRELSQRKDLDMFDRSAIETSEIKYADVKLEANRETVMKEKH 499
Query: 547 TEENVDRDILETKD 560
E+ V+ L KD
Sbjct: 500 -EKKVET--LAAKD 510
>UNIPROTKB|A1A4H6 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:BC126497 IPI:IPI00734460 RefSeq:NP_001073740.1 UniGene:Bt.2644
ProteinModelPortal:A1A4H6 PRIDE:A1A4H6 Ensembl:ENSBTAT00000057089
GeneID:514567 KEGG:bta:514567 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH NextBio:20871404
Uniprot:A1A4H6
Length = 765
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 149/435 (34%), Positives = 234/435 (53%)
Query: 10 RKAVRSMEIEEIELLNSWIDSQ-KPESGTNPLSFPPLGKK--EPIGRIGEDSFSKYVGST 66
RK V + E EE E S D ++ T + KK + G ED+ S+Y +
Sbjct: 129 RKDVEASEDEESETDYSSADENILTKADTLKIKERKKKKKKGQEAGGFFEDA-SQYDENL 187
Query: 67 RFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLE 126
F + +S+ + GF + T IQ+A +P L G+DI A TG+GKT AF +PVLE
Sbjct: 188 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 247
Query: 127 KL-YKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEH 185
+L YK R P V +++ PTREL Q+ V K + + + + L +GG DV ++
Sbjct: 248 RLIYKPRQAPVTRV--LVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGL-DVKSQEAA 304
Query: 186 VNEL-NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKH 244
+ +IL+ TPGRL+ H+ P+F S +++LILDEADR+LD F++ + I+ H
Sbjct: 305 LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHH 364
Query: 245 RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ--KLDML 302
RQT LFSAT T V+DLA +SLK+P + V+ + A P Q+ I P + + ++
Sbjct: 365 RQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVA-PFLRQEFIRIRPNREGDREAIV 423
Query: 303 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK 362
+ + +++F + KQ + + G+ + L+G + Q +R+ +F ++
Sbjct: 424 AALLMRTFTDHVMLFTQTKKQAHRMHILLGLM--GLQVGELHGNLSQTQRLEALRRFKDE 481
Query: 363 R-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 421
+ +L TDVA+RGLD + V V+ P + Y+HRVGRTAR GRSV + E
Sbjct: 482 QIDILVATDVAARGLDI-EGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEE 540
Query: 422 MKMLEKL-REAKIPI 435
KML+++ + AK P+
Sbjct: 541 RKMLKEIVKAAKAPV 555
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 127/362 (35%), Positives = 207/362 (57%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F L ++ G+ K T IQ ++P +L GRDI+G A+TGSGKT AF +P+L
Sbjct: 26 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 85
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
L + P+ + +++++PTRELA Q+ + +A+G + +++GG +
Sbjct: 86 LLET---PQR-LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141
Query: 188 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQT 247
+ +I++ TPGRL+ H++ T F+ L+ L++DEADRIL++ F+ ++ I+ +P+ R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201
Query: 248 FLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIK 307
FLFSAT TK VQ L R +LK+P +V S T +LQQ + +P + K L +
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAV--SSKYQTVEKLQQYYIFIPSKFKDTYLVYILN 259
Query: 308 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK-RSVL 366
+ ++F ++C + + L G + L+G+M Q +R+ +F K RS+L
Sbjct: 260 ELAGNSFMIFCSTCNNTQRTALLLRNL--GFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317
Query: 367 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLE 426
TDVASRGLD VD VV D P YIHRVGRTAR G+++ F+T ++++ +
Sbjct: 318 LATDVASRGLDIPH-VDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376
Query: 427 KL 428
++
Sbjct: 377 RI 378
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 526 (190.2 bits), Expect = 9.8e-54, Sum P(2) = 9.8e-54
Identities = 133/365 (36%), Positives = 204/365 (55%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F++L +S+ ++ GF + T IQ ++P +L G+DIL +A TGSGKT AF++PVLE+
Sbjct: 192 FEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLER 251
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
L R + +I+ PTRELA Q V++ + + N ++ L++GG + E E
Sbjct: 252 LLF-RDSEYRAIRVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVELRK 310
Query: 188 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQT 247
++++ TPGRL+ H+ L+ILILDEADR+LD+GFK +N IV P +RQT
Sbjct: 311 SPDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTNRQT 370
Query: 248 FLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP--LEQKLDMLWSF 305
LFSAT V+ LA+LSL+ P + V + + T Q+ I P L + +L S
Sbjct: 371 MLFSATLNDEVKTLAKLSLQQPIRVQV-DALMQVTSTLEQEFVKIKPQHLSDRPAILLSL 429
Query: 306 IKAHLNSK-ILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR- 363
N ++F S K+V + F + L+G + Q++R QF + +
Sbjct: 430 CTRVFNQGGTIIFCRSKKEVHRLRIIFGL--SDLKAAELHGNLSQEQRFDSLQQFRDGQV 487
Query: 364 SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 423
+ L +DVASRGLD V V+ + P ++A+YIHRVGRTAR G+S F+T + K
Sbjct: 488 NYLLASDVASRGLDII-GVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRK 546
Query: 424 MLEKL 428
+L+ +
Sbjct: 547 LLKDI 551
Score = 53 (23.7 bits), Expect = 9.8e-54, Sum P(2) = 9.8e-54
Identities = 27/111 (24%), Positives = 48/111 (43%)
Query: 530 KEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINV 589
K +K + EK++ + + +TK ED+ K +L + + V KKLK
Sbjct: 598 KAEKTLDKAEKIISNADANVETPKVWYKTKQEEDKSK-ELWK--IENNIVNPGKKLKA-- 652
Query: 590 HRPLGTRLVFDEECNTVPPLAMLADTKNANVSLDQDQKTEYYKKIREELKR 640
P+ V N VP + L K+ L + Q+ +++ +EE +R
Sbjct: 653 --PIDVTGV-----NNVPSIKKLKQKKDPYYGLSRKQRR--HRQFKEEFER 694
Score = 40 (19.1 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 625 DQKTEYYKKI-REELKRAD 642
++ TE K I REE+K AD
Sbjct: 577 EELTEDIKSIVREEMKEAD 595
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 175/566 (30%), Positives = 292/566 (51%)
Query: 56 EDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSG 115
ED+ S+Y + F + +S+ + GF + T IQ+A +P L G+DI A TG+G
Sbjct: 192 EDA-SQYDENLTFHDMNLSRPLLKAISTMGFKQPTPIQKACVPVGLLGKDICACAATGTG 250
Query: 116 KTLAFVIPVLEKL-YKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIG 174
KT AF++PVLE+L YK R V +++ PTREL Q+ V + + + S L +G
Sbjct: 251 KTAAFMLPVLERLIYKPRETQVTRV--LVLVPTRELGIQVHTVARQLAQFTTISTCLAVG 308
Query: 175 GRRDVDMEKEHVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKA 233
G D+ ++ + ++L+ TPGRL+ H+ TP+F+ SQ++ILILDEADR+LD F++
Sbjct: 309 GL-DLKSQEAALRAGPDVLIATPGRLIDHLHNTPSFELSQIEILILDEADRMLDEYFEEQ 367
Query: 234 LNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIV 293
+ I+ RQT LFSAT ++ V+DLA +SLK P + V+ + A P Q+ I
Sbjct: 368 MKEIIRMCAYQRQTMLFSATMSEEVKDLASVSLKQPVRIFVNSNTDVA-PYLRQEFVRIR 426
Query: 294 PLEQ--KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDR 351
P ++ + ++ + + +++F + KQ + + G+ + L+G + Q +
Sbjct: 427 PNKEGDREAIVAALLTRTFQDHVMLFTQTKKQAHRMHILLGLM--GLKVGELHGNLSQTQ 484
Query: 352 RMAIYAQFCEKR-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSG 410
R+ +F +++ +L TDVA+RGLD + V V+ P V Y+HRVGRTAR
Sbjct: 485 RLESLRRFKDEQIDILVATDVAARGLDI-EGVKTVINFTMPNTVKHYVHRVGRTARAGKV 543
Query: 411 GRSVLFLTPTEMKMLEKL-REAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKA 469
GRSV + TE KML+++ ++AK P+ KA R+ P +++K+ D+ + +K
Sbjct: 544 GRSVSLVGETERKMLKEIVKKAKFPV---KA---RVIPQE-----VILKFRDLIEKLEKD 592
Query: 470 FITYLRSVHIQKDKEVFDVTKLSIDE-FSASLGLPMTPKIRF-LNQ--KKGKMVPVKPVL 525
L +K+ + S + + S P+ F N+ KK +M
Sbjct: 593 VYAVLCLEKEEKEMAHSEAQISSAQKRLTKSEDEKQLPRTWFQTNEERKKDRMAKALQDF 652
Query: 526 DNA--EKEDKLMISREKLLPDNFTEENVDRDILETKDI-EDEGKADLLEDVMRAT-RVKK 581
D A K+ + ++ + EE ++L+++ E K + + RA +
Sbjct: 653 DLALRGKKKRAQFLKQGKRKELTAEERAQLEVLKSQMFAERAAKRERKQKRARAIPEDQP 712
Query: 582 NKK-LKINVHRPLGTRLVFDEEC-NT 605
+KK LK N + G + VFD+E NT
Sbjct: 713 DKKALKKNAGKA-GKKSVFDKELTNT 737
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
Identities = 126/362 (34%), Positives = 207/362 (57%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F L ++ G+ T IQ ++P +L GRDI+G A+TGSGKT AF +P+L+
Sbjct: 27 FKDLGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPILQA 86
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
L P+ + +++++PTRELA Q+ + +A+G + +++GG +
Sbjct: 87 LLD---APQR-LFALVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAK 142
Query: 188 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQT 247
+ +I++ TPGRL+ H++ T F+ L+ L++DEADRIL++ F+ ++ I+ +P+ R+T
Sbjct: 143 KPHIIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRKT 202
Query: 248 FLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIK 307
FLFSAT TK VQ L R +LK+P +V S T +LQQ + +P + K L +
Sbjct: 203 FLFSATMTKQVQKLQRAALKNPVKCAV--SSKYQTVEKLQQYYIFIPSKFKDSYLVYILN 260
Query: 308 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK-RSVL 366
+ ++F ++C + + L G + L+G+M Q++R+ +F K RS+L
Sbjct: 261 ELAGNSFMIFCSTCNNTQRTALLLRNL--GFTAIPLHGQMSQNKRLGSLNKFKAKARSIL 318
Query: 367 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLE 426
TDVASRGLD VD V+ D P YIHRVGRTAR G+S+ F+T ++++ +
Sbjct: 319 LATDVASRGLDIPH-VDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQ 377
Query: 427 KL 428
++
Sbjct: 378 RI 379
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 531 (192.0 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 132/375 (35%), Positives = 216/375 (57%)
Query: 66 TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVL 125
T F +L +S ++ GF + T IQ ++PH+L G+DI+G A+TG+GKT AF +P+L
Sbjct: 2 TTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL 61
Query: 126 EKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGR---RDVDME 182
+K+ + + V I+I+PTRELA Q+ + L +GKH + GG+ R +
Sbjct: 62 DKVDTHK----ESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRAL 117
Query: 183 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP 242
K+H + I+V TPGR+L H++ ++ ++LDEAD +L++GF + + AI++ +P
Sbjct: 118 KKHPH---IIVGTPGRILDHINRK-TLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVP 173
Query: 243 KHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDML 302
+ QT LFSAT ++ +A + +PQ++ V + VT PN +QQ + V ++K D+L
Sbjct: 174 ETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTM-PN-IQQFYLEVQEKKKFDVL 231
Query: 303 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK 362
+ +VF + ++V + EA LR G ++G + Q +RM++ +F E
Sbjct: 232 TRLLDIQSPELAIVFGRTKRRVDELSEALN-LR-GYAAEGIHGDLTQAKRMSVLRKFKEG 289
Query: 363 R-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 421
VL TDVA+RGLD + V V D P+D SY+HR+GRT R G ++LF+TP E
Sbjct: 290 SIEVLVATDVAARGLDIS-GVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Query: 422 ---MKMLEKLREAKI 433
+K +E+ + K+
Sbjct: 349 SGQLKNIERTTKRKM 363
Score = 39 (18.8 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 624 QDQKTEYYKKIREEL 638
+++ YYK+I EE+
Sbjct: 391 ENENLAYYKRIAEEM 405
Score = 39 (18.8 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 15/75 (20%), Positives = 35/75 (46%)
Query: 547 TEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINVHRPLGTRLVFDEECNTV 606
T+ +DR T D EG+ L+ + +++T +N + ++ + ++ + + TV
Sbjct: 359 TKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENEN----LAYYKRIAEEMLEENDSVTV 414
Query: 607 PPLAMLADTKNANVS 621
A+ TK + +
Sbjct: 415 VAAALKMMTKEPDTT 429
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 531 (192.0 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 132/375 (35%), Positives = 216/375 (57%)
Query: 66 TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVL 125
T F +L +S ++ GF + T IQ ++PH+L G+DI+G A+TG+GKT AF +P+L
Sbjct: 2 TTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL 61
Query: 126 EKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGR---RDVDME 182
+K+ + + V I+I+PTRELA Q+ + L +GKH + GG+ R +
Sbjct: 62 DKVDTHK----ESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRAL 117
Query: 183 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP 242
K+H + I+V TPGR+L H++ ++ ++LDEAD +L++GF + + AI++ +P
Sbjct: 118 KKHPH---IIVGTPGRILDHINRK-TLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVP 173
Query: 243 KHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDML 302
+ QT LFSAT ++ +A + +PQ++ V + VT PN +QQ + V ++K D+L
Sbjct: 174 ETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTM-PN-IQQFYLEVQEKKKFDVL 231
Query: 303 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK 362
+ +VF + ++V + EA LR G ++G + Q +RM++ +F E
Sbjct: 232 TRLLDIQSPELAIVFGRTKRRVDELSEALN-LR-GYAAEGIHGDLTQAKRMSVLRKFKEG 289
Query: 363 R-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 421
VL TDVA+RGLD + V V D P+D SY+HR+GRT R G ++LF+TP E
Sbjct: 290 SIEVLVATDVAARGLDIS-GVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Query: 422 ---MKMLEKLREAKI 433
+K +E+ + K+
Sbjct: 349 SGQLKNIERTTKRKM 363
Score = 39 (18.8 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 624 QDQKTEYYKKIREEL 638
+++ YYK+I EE+
Sbjct: 391 ENENLAYYKRIAEEM 405
Score = 39 (18.8 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 15/75 (20%), Positives = 35/75 (46%)
Query: 547 TEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINVHRPLGTRLVFDEECNTV 606
T+ +DR T D EG+ L+ + +++T +N + ++ + ++ + + TV
Sbjct: 359 TKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENEN----LAYYKRIAEEMLEENDSVTV 414
Query: 607 PPLAMLADTKNANVS 621
A+ TK + +
Sbjct: 415 VAAALKMMTKEPDTT 429
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 531 (192.0 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 132/375 (35%), Positives = 216/375 (57%)
Query: 66 TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVL 125
T F +L +S ++ GF + T IQ ++PH+L G+DI+G A+TG+GKT AF +P+L
Sbjct: 2 TTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL 61
Query: 126 EKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGR---RDVDME 182
+K+ + + V I+I+PTRELA Q+ + L +GKH + GG+ R +
Sbjct: 62 DKVDTHK----ESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRAL 117
Query: 183 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP 242
K+H + I+V TPGR+L H++ ++ ++LDEAD +L++GF + + AI++ +P
Sbjct: 118 KKHPH---IIVGTPGRILDHINRK-TLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVP 173
Query: 243 KHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDML 302
+ QT LFSAT ++ +A + +PQ++ V + VT PN +QQ + V ++K D+L
Sbjct: 174 ETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTM-PN-IQQFYLEVQEKKKFDVL 231
Query: 303 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK 362
+ +VF + ++V + EA LR G ++G + Q +RM++ +F E
Sbjct: 232 TRLLDIQSPELAIVFGRTKRRVDELSEALN-LR-GYAAEGIHGDLTQAKRMSVLRKFKEG 289
Query: 363 R-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 421
VL TDVA+RGLD + V V D P+D SY+HR+GRT R G ++LF+TP E
Sbjct: 290 SIEVLVATDVAARGLDIS-GVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Query: 422 ---MKMLEKLREAKI 433
+K +E+ + K+
Sbjct: 349 SGQLKNIERTTKRKM 363
Score = 39 (18.8 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 624 QDQKTEYYKKIREEL 638
+++ YYK+I EE+
Sbjct: 391 ENENLAYYKRIAEEM 405
Score = 39 (18.8 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 15/75 (20%), Positives = 35/75 (46%)
Query: 547 TEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINVHRPLGTRLVFDEECNTV 606
T+ +DR T D EG+ L+ + +++T +N + ++ + ++ + + TV
Sbjct: 359 TKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENEN----LAYYKRIAEEMLEENDSVTV 414
Query: 607 PPLAMLADTKNANVS 621
A+ TK + +
Sbjct: 415 VAAALKMMTKEPDTT 429
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 531 (192.0 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 132/375 (35%), Positives = 216/375 (57%)
Query: 66 TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVL 125
T F +L +S ++ GF + T IQ ++PH+L G+DI+G A+TG+GKT AF +P+L
Sbjct: 2 TTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL 61
Query: 126 EKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGR---RDVDME 182
+K+ + + V I+I+PTRELA Q+ + L +GKH + GG+ R +
Sbjct: 62 DKVDTHK----ESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRAL 117
Query: 183 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP 242
K+H + I+V TPGR+L H++ ++ ++LDEAD +L++GF + + AI++ +P
Sbjct: 118 KKHPH---IIVGTPGRILDHINRK-TLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVP 173
Query: 243 KHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDML 302
+ QT LFSAT ++ +A + +PQ++ V + VT PN +QQ + V ++K D+L
Sbjct: 174 ETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTM-PN-IQQFYLEVQEKKKFDVL 231
Query: 303 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK 362
+ +VF + ++V + EA LR G ++G + Q +RM++ +F E
Sbjct: 232 TRLLDIQSPELAIVFGRTKRRVDELSEALN-LR-GYAAEGIHGDLTQAKRMSVLRKFKEG 289
Query: 363 R-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 421
VL TDVA+RGLD + V V D P+D SY+HR+GRT R G ++LF+TP E
Sbjct: 290 SIEVLVATDVAARGLDIS-GVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Query: 422 ---MKMLEKLREAKI 433
+K +E+ + K+
Sbjct: 349 SGQLKNIERTTKRKM 363
Score = 39 (18.8 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 624 QDQKTEYYKKIREEL 638
+++ YYK+I EE+
Sbjct: 391 ENENLAYYKRIAEEM 405
Score = 39 (18.8 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 15/75 (20%), Positives = 35/75 (46%)
Query: 547 TEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINVHRPLGTRLVFDEECNTV 606
T+ +DR T D EG+ L+ + +++T +N + ++ + ++ + + TV
Sbjct: 359 TKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENEN----LAYYKRIAEEMLEENDSVTV 414
Query: 607 PPLAMLADTKNANVS 621
A+ TK + +
Sbjct: 415 VAAALKMMTKEPDTT 429
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 531 (192.0 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 132/375 (35%), Positives = 216/375 (57%)
Query: 66 TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVL 125
T F +L +S ++ GF + T IQ ++PH+L G+DI+G A+TG+GKT AF +P+L
Sbjct: 2 TTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL 61
Query: 126 EKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGR---RDVDME 182
+K+ + + V I+I+PTRELA Q+ + L +GKH + GG+ R +
Sbjct: 62 DKVDTHK----ESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRAL 117
Query: 183 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP 242
K+H + I+V TPGR+L H++ ++ ++LDEAD +L++GF + + AI++ +P
Sbjct: 118 KKHPH---IIVGTPGRILDHINRK-TLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVP 173
Query: 243 KHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDML 302
+ QT LFSAT ++ +A + +PQ++ V + VT PN +QQ + V ++K D+L
Sbjct: 174 ETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTM-PN-IQQFYLEVQEKKKFDVL 231
Query: 303 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK 362
+ +VF + ++V + EA LR G ++G + Q +RM++ +F E
Sbjct: 232 TRLLDIQSPELAIVFGRTKRRVDELSEALN-LR-GYAAEGIHGDLTQAKRMSVLRKFKEG 289
Query: 363 R-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 421
VL TDVA+RGLD + V V D P+D SY+HR+GRT R G ++LF+TP E
Sbjct: 290 SIEVLVATDVAARGLDIS-GVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Query: 422 ---MKMLEKLREAKI 433
+K +E+ + K+
Sbjct: 349 SGQLKNIERTTKRKM 363
Score = 39 (18.8 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 624 QDQKTEYYKKIREEL 638
+++ YYK+I EE+
Sbjct: 391 ENENLAYYKRIAEEM 405
Score = 39 (18.8 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 15/75 (20%), Positives = 35/75 (46%)
Query: 547 TEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINVHRPLGTRLVFDEECNTV 606
T+ +DR T D EG+ L+ + +++T +N + ++ + ++ + + TV
Sbjct: 359 TKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENEN----LAYYKRIAEEMLEENDSVTV 414
Query: 607 PPLAMLADTKNANVS 621
A+ TK + +
Sbjct: 415 VAAALKMMTKEPDTT 429
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 531 (192.0 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 132/375 (35%), Positives = 216/375 (57%)
Query: 66 TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVL 125
T F +L +S ++ GF + T IQ ++PH+L G+DI+G A+TG+GKT AF +P+L
Sbjct: 2 TTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL 61
Query: 126 EKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGR---RDVDME 182
+K+ + + V I+I+PTRELA Q+ + L +GKH + GG+ R +
Sbjct: 62 DKVDTHK----ESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRAL 117
Query: 183 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP 242
K+H + I+V TPGR+L H++ ++ ++LDEAD +L++GF + + AI++ +P
Sbjct: 118 KKHPH---IIVGTPGRILDHINRK-TLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVP 173
Query: 243 KHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDML 302
+ QT LFSAT ++ +A + +PQ++ V + VT PN +QQ + V ++K D+L
Sbjct: 174 ETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTM-PN-IQQFYLEVQEKKKFDVL 231
Query: 303 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK 362
+ +VF + ++V + EA LR G ++G + Q +RM++ +F E
Sbjct: 232 TRLLDIQSPELAIVFGRTKRRVDELSEALN-LR-GYAAEGIHGDLTQAKRMSVLRKFKEG 289
Query: 363 R-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 421
VL TDVA+RGLD + V V D P+D SY+HR+GRT R G ++LF+TP E
Sbjct: 290 SIEVLVATDVAARGLDIS-GVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Query: 422 ---MKMLEKLREAKI 433
+K +E+ + K+
Sbjct: 349 SGQLKNIERTTKRKM 363
Score = 39 (18.8 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 624 QDQKTEYYKKIREEL 638
+++ YYK+I EE+
Sbjct: 391 ENENLAYYKRIAEEM 405
Score = 39 (18.8 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 15/75 (20%), Positives = 35/75 (46%)
Query: 547 TEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINVHRPLGTRLVFDEECNTV 606
T+ +DR T D EG+ L+ + +++T +N + ++ + ++ + + TV
Sbjct: 359 TKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENEN----LAYYKRIAEEMLEENDSVTV 414
Query: 607 PPLAMLADTKNANVS 621
A+ TK + +
Sbjct: 415 VAAALKMMTKEPDTT 429
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 531 (192.0 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 132/375 (35%), Positives = 216/375 (57%)
Query: 66 TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVL 125
T F +L +S ++ GF + T IQ ++PH+L G+DI+G A+TG+GKT AF +P+L
Sbjct: 2 TTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL 61
Query: 126 EKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGR---RDVDME 182
+K+ + + V I+I+PTRELA Q+ + L +GKH + GG+ R +
Sbjct: 62 DKVDTHK----ESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRAL 117
Query: 183 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP 242
K+H + I+V TPGR+L H++ ++ ++LDEAD +L++GF + + AI++ +P
Sbjct: 118 KKHPH---IIVGTPGRILDHINRK-TLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVP 173
Query: 243 KHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDML 302
+ QT LFSAT ++ +A + +PQ++ V + VT PN +QQ + V ++K D+L
Sbjct: 174 ETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTM-PN-IQQFYLEVQEKKKFDVL 231
Query: 303 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK 362
+ +VF + ++V + EA LR G ++G + Q +RM++ +F E
Sbjct: 232 TRLLDIQSPELAIVFGRTKRRVDELSEALN-LR-GYAAEGIHGDLTQAKRMSVLRKFKEG 289
Query: 363 R-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 421
VL TDVA+RGLD + V V D P+D SY+HR+GRT R G ++LF+TP E
Sbjct: 290 SIEVLVATDVAARGLDIS-GVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Query: 422 ---MKMLEKLREAKI 433
+K +E+ + K+
Sbjct: 349 SGQLKNIERTTKRKM 363
Score = 39 (18.8 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 624 QDQKTEYYKKIREEL 638
+++ YYK+I EE+
Sbjct: 391 ENENLAYYKRIAEEM 405
>UNIPROTKB|E1C187 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AADN02019007
IPI:IPI00822640 Ensembl:ENSGALT00000011297 ArrayExpress:E1C187
Uniprot:E1C187
Length = 759
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 170/551 (30%), Positives = 280/551 (50%)
Query: 46 GKKEPIGRIGEDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRD 105
G+KE ED+ S+Y + F + +S+ + GF + T IQ+A +P L G+D
Sbjct: 162 GQKEAESFF-EDA-SEYDDNLSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKD 219
Query: 106 ILGAAKTGS-GKTLAFVIPVLEKL-YKERWGPEDGVGSIIISPTRELADQLFDVLKAVGK 163
I A TG+ GKT AF++PVLE+L YK R P V +++ PTREL Q+ V K + +
Sbjct: 220 ICACAATGTVGKTAAFILPVLERLIYKPRQAPITRV--LVLVPTRELGIQVHSVTKQLAQ 277
Query: 164 HHNFSAGLLIGGRRDVDMEKEHVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEA 222
+ + L +GG DV ++ + +IL+ TPGRL+ H+ P+F S +++LILDEA
Sbjct: 278 FSSVTTCLAVGGL-DVKTQEAALRSGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEA 336
Query: 223 DRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTAT 282
DR+LD F++ + I+ +HRQT LFSAT T+ V+DLA +SLK+P + V+ + A
Sbjct: 337 DRMLDEYFEEQMKEIIRLCSRHRQTMLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVA- 395
Query: 283 PNRLQQTAMIVPLEQ--KLDMLWSFIKAHLNSKILVFLTSCKQVK--YVFEAFKKLRPGI 338
P Q+ I P + + ++ + + +++F + KQ ++ LR G
Sbjct: 396 PFLRQEFIRIRPNREGDREAIVSALLTRTFPDHVMLFTQTKKQAHRMHILLGLMGLRVGE 455
Query: 339 PLMCLYGRMKQDRRMAIYAQFCEKR-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASY 397
L+G + Q +R+ +F +++ +L TDVA+RGLD + V V+ P Y
Sbjct: 456 ----LHGNLSQAQRLEALRRFKDEQIDILVATDVAARGLDI-EGVKTVINFTMPNTTKHY 510
Query: 398 IHRVGRTARYNSGGRSVLFLTPTEMKMLEKL-REAKIPIHFTKANTKRLQPVSGLLAALL 456
+HRVGRTAR GRSV + E KML+++ + AK P+ KA R+ P +L
Sbjct: 511 VHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAAKTPV---KA---RILPQDVILK-FR 563
Query: 457 VKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKG 516
K +++ +Q+ + + K ++E + F +++
Sbjct: 564 EKIENLEKDVYAVLCLEREEREMQQSEAQINKAKKQLEEGKQEAATKGVERSWFQTREER 623
Query: 517 KMVPVKPVLDNAEKEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRA 576
K K L A +E L + R K F ++ R T E+ + ++L+ M A
Sbjct: 624 K----KEKLAKALQEFDLAL-RGKKKRKKFMQDT-QRKAQMTP--EERSQFEILKSQMYA 675
Query: 577 TRV-KKNKKLK 586
R+ K+N+++K
Sbjct: 676 ERLAKRNRRVK 686
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 531 (192.0 bits), Expect = 3.3e-53, Sum P(2) = 3.3e-53
Identities = 132/383 (34%), Positives = 214/383 (55%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F +L + ++ + G+ + IQ +LP +L G+D++G A+TGSGKT AF IP+L+
Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQA 70
Query: 128 L--Y------KERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDV 179
L Y K+ P+ + ++SPTRELA Q+ + +A+G + +L+GG +
Sbjct: 71 LLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGG---I 127
Query: 180 DMEKEHV---NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNA 236
D ++ + +++V TPGRL HM +T F L+ L+LDEADR+L+ F+K+LN
Sbjct: 128 DRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQ 187
Query: 237 IVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLE 296
I+ ++P R+TFLFSAT TK V+ L R L++P + + S +T + L+Q V +
Sbjct: 188 ILEEIPLERKTFLFSATMTKKVRKLQRACLRNP--VKIEAASKYSTVDTLKQQYRFVAAK 245
Query: 297 QKLDMLWSFIKAHL-NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAI 355
K D +I + + S ++F +C +++ + L G + + G+M Q +R+
Sbjct: 246 YK-DCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSL--GFRAIPISGQMTQSKRLGA 302
Query: 356 YAQF-CEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSV 414
+F + ++L CTDVASRGLD +VD V+ D P + YIHRVGRTAR G +
Sbjct: 303 LNKFKAGECNILVCTDVASRGLDI-PSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGI 361
Query: 415 LFLTPTEMK---MLEKLREAKIP 434
+ E++ +EKL K+P
Sbjct: 362 SLVNQYELEWYIQIEKLIGKKLP 384
Score = 37 (18.1 bits), Expect = 3.3e-53, Sum P(2) = 3.3e-53
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 695 KKAKIYFDSDSDNDNDERKQNKD 717
++++ + + D N ER NKD
Sbjct: 425 EESERFLGGNKDRGNKERGGNKD 447
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 550 (198.7 bits), Expect = 5.1e-53, P = 5.1e-53
Identities = 133/367 (36%), Positives = 198/367 (53%)
Query: 64 GSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIP 123
G+ F + +S+ GL GF K T IQ ++P +L G+D++G A TGSGKT AFV+P
Sbjct: 253 GNASFQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVP 312
Query: 124 VLEKL-YKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDME 182
+LE+L Y+ + P V +I++PTRELA Q V + H + L +GG E
Sbjct: 313 ILERLLYRPKKVPTSRV--VILAPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQE 370
Query: 183 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP 242
E ++++ TPGR + HM + +F ++IL+LDEADR+L+ GF LN I++ LP
Sbjct: 371 SELRLRPDVIIATPGRFIDHMRNSASFAVDTVEILVLDEADRMLEDGFADELNEILTTLP 430
Query: 243 KHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP--LEQKLD 300
K RQT LFSAT T SV +L R+ L P L V + T Q+ + P E+++
Sbjct: 431 KSRQTMLFSATMTSSVDNLIRVGLNKPVRLMVDSQKKTVV-TLTQEFVRLRPGREEKRMG 489
Query: 301 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFC 360
L K ++++F K + F L G+ L+G M Q +R+ F
Sbjct: 490 YLVYLCKNLYTERVIIFFRQKKIAHHARIIFGLL--GLSCAELHGSMSQIQRIQSVEAFR 547
Query: 361 E-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTP 419
+ K S L TD+ASRGLD K VD V+ + P+ + Y+HRVGRTAR G ++
Sbjct: 548 DGKVSFLLATDLASRGLDI-KGVDTVINYEAPQSLEIYVHRVGRTARAGRSGTAITLAAE 606
Query: 420 TEMKMLE 426
+ K+++
Sbjct: 607 PDRKVVK 613
>UNIPROTKB|I3L976 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
Length = 456
Score = 528 (190.9 bits), Expect = 6.9e-53, Sum P(2) = 6.9e-53
Identities = 124/340 (36%), Positives = 192/340 (56%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F L ++ G+ K T IQ ++P +L GRDI+G A+TGSGKT AF +P+L
Sbjct: 25 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 84
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
L + P+ + +++++PTRELA Q+ + +A+G +++GG +
Sbjct: 85 LLET---PQR-LFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK 140
Query: 188 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQT 247
+ +I++ TPGRL+ H++ T F+ L+ L++DEADRIL++ F+ ++ I+ +P+ R+T
Sbjct: 141 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 200
Query: 248 FLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIK 307
FLFSAT TK VQ L R +LK+P +V S T +LQQ + +P + K L +
Sbjct: 201 FLFSATMTKKVQKLQRAALKNPVKCAV--SSKYQTVEKLQQYYLFIPSKFKDTYLVYILN 258
Query: 308 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK-RSVL 366
+ ++F ++C + + L G + L+G+M Q +R+ +F K RS+L
Sbjct: 259 ELAGNSFMIFCSTCNNTQRTALLLRNL--GFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 316
Query: 367 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR 406
TDVASRGLD VD VV D P YIHRVGRTAR
Sbjct: 317 LATDVASRGLDIPH-VDVVVNFDIPTHSKDYIHRVGRTAR 355
Score = 37 (18.1 bits), Expect = 6.9e-53, Sum P(2) = 6.9e-53
Identities = 5/16 (31%), Positives = 13/16 (81%)
Query: 710 DERKQNKDDNGPNIDS 725
+++K++++D G N D+
Sbjct: 420 EKKKRSREDTGDNDDT 435
>TAIR|locus:2054688 [details] [associations]
symbol:AT2G07750 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268799 EMBL:AC004483 IPI:IPI00546939 PIR:E84488
RefSeq:NP_178818.1 UniGene:At.52694 ProteinModelPortal:O80792
SMR:O80792 PaxDb:O80792 PRIDE:O80792 EnsemblPlants:AT2G07750.1
GeneID:815422 KEGG:ath:AT2G07750 GeneFarm:994 TAIR:At2g07750
InParanoid:O80792 OMA:FRKTALK PhylomeDB:O80792
ProtClustDB:CLSN2713541 Genevestigator:O80792 GermOnline:AT2G07750
Uniprot:O80792
Length = 845
Score = 551 (199.0 bits), Expect = 8.9e-53, P = 8.9e-53
Identities = 149/484 (30%), Positives = 256/484 (52%)
Query: 45 LGKKEPIGRIGEDSFSKY---VGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSL 101
L KK+ + + E+ + + RFD+ IS T L +G VKMT +Q A+L L
Sbjct: 351 LSKKQSVDNVMEEKQEPHDSIYSAKRFDESCISPLTLKALSASGIVKMTRVQDATLSECL 410
Query: 102 CGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSI------IISPTRELADQLF 155
G+D L AKTG+GK++AF++P +E + K GV + I+ PTRELA Q+
Sbjct: 411 DGKDALVKAKTGTGKSMAFLLPAIETVLKAM-NSGKGVHKVAPIFVLILCPTRELASQIA 469
Query: 156 DVLKAVGKHHN-FSAGLLIGGRR-DVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCS- 212
KA+ K+H+ LIGG R +D ++ IL+ TPGRLL H++
Sbjct: 470 AEGKALLKNHDGIGVQTLIGGTRFRLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRL 529
Query: 213 -QLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLK-DPQ 270
L++ I+DEAD +LD+GFK+ + I+ LP+ RQ+ LFSAT K V+ +++L LK D
Sbjct: 530 MALKLFIVDEADLLLDLGFKRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHS 589
Query: 271 YLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNS----KILVFLTSCKQVKY 326
Y+ T ++++Q+ ++ P E ++ +K H+N+ KI+VF ++
Sbjct: 590 YIDTIGLGCVETHDKVKQSCIVAPHESHFHLVPHLLKEHINNMPDYKIIVFCSTGMVTSL 649
Query: 327 VFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK-RSVLFCTDVASRGLDFNKAVDWV 385
++ ++++ + + ++ R Q R + +F E R +L +DV++RG+++ V V
Sbjct: 650 MYTLLREMK--LNVREIHARKPQLHRTCVSDEFKESNRLILVTSDVSARGMNYPD-VTLV 706
Query: 386 VQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKI-PIHFTKANTKR 444
+QV P D YIHR+GRT R GG+ +L + P E L++L++ + PI +++
Sbjct: 707 IQVGIPSDREQYIHRLGRTGREGKGGKGLLLIAPWERYFLDELKDLPLEPIPAPDLDSRV 766
Query: 445 LQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPM 504
V +A + ++ A A++ Y SV + ++ + +L+ + F S+GL
Sbjct: 767 KHQVDQSMAKIDTS---IKEAAYHAWLGYYNSVR-ETGRDKTTLAELA-NRFCHSIGLEK 821
Query: 505 TPKI 508
P +
Sbjct: 822 PPAL 825
>POMBASE|SPBC17D1.06 [details] [associations]
symbol:dbp3 "ATP-dependent RNA helicase Dbp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
"ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
Uniprot:Q10202
Length = 578
Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
Identities = 161/480 (33%), Positives = 252/480 (52%)
Query: 2 KKSKRKPNRKAVRSMEI--EE-IELLNSWIDSQKPESGTNPLSFPPLGKKEPIGRIGEDS 58
KKSK+ ++ S+EI EE ++ I S + + ++ KK I S
Sbjct: 100 KKSKKGKSKTKEESIEINAEEGAKIAQPAIGSANASNHNDEEAYDRYIKKHNISFADPKS 159
Query: 59 FSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTL 118
+ +FD+L +S K + GLK+ + + T IQ A+ P+ L GRD++G A+TGSGKT+
Sbjct: 160 SENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTV 217
Query: 119 AFVIPVLEKLYKERWGPEDGVGSI-IISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRR 177
AF IP L+ Y V + ++SPTRELA Q ++ L ++ + N A ++ GG
Sbjct: 218 AFGIPALQ--YLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAP 275
Query: 178 DVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAI 237
+ + N ++++ TPGRLL +++ + DCSQ+ L+LDEADR+LD GF++ + I
Sbjct: 276 KSEQARAAKNA-SVIIGTPGRLLDLINDG-SIDCSQVGYLVLDEADRMLDTGFEQDIRNI 333
Query: 238 VSQLPK-----HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMI 292
+S P RQT FSAT +SV+ LA LKDP +++ + + A+ N Q ++
Sbjct: 334 ISHTPDPTRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEIL 393
Query: 293 VPLEQKLDMLWSFIKAHLNS-----KILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRM 347
K ML + ++ HL+S KIL+F+ K+ V E L ++ ++G M
Sbjct: 394 DDPRSKERMLDNLLRKHLSSGGKDDKILIFVLYKKEAARV-EG--TLARKYNVVGIHGDM 450
Query: 348 KQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR 406
Q R+ F K VL TDVA+RGLD K V V+ V P + Y+HR+GRT R
Sbjct: 451 SQGARLQALNDFKSGKCPVLVATDVAARGLDIPK-VQLVINVTFPLTIEDYVHRIGRTGR 509
Query: 407 YNSGGRSVLFLTPTEM----KMLEKLREAK--IPIHFTKANTKRLQPVSGLLAALLVKYP 460
N+ G ++ F TP + +++ LR+AK IP K T ++P + +V P
Sbjct: 510 ANTKGTAITFFTPQDKSHAGELVNVLRQAKQDIPEGLFKFGTA-VKPKLNAYGSRVVDVP 568
>WB|WBGene00019219 [details] [associations]
symbol:H20J04.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0002009 GO:GO:0040010
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:FO080156
RefSeq:NP_001040789.1 ProteinModelPortal:Q2WF63 SMR:Q2WF63
PaxDb:Q2WF63 EnsemblMetazoa:H20J04.4b GeneID:186756
KEGG:cel:CELE_H20J04.4 UCSC:H20J04.4a CTD:186756 WormBase:H20J04.4b
InParanoid:Q2WF63 NextBio:932876 ArrayExpress:Q2WF63 Uniprot:Q2WF63
Length = 561
Score = 516 (186.7 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
Identities = 151/473 (31%), Positives = 247/473 (52%)
Query: 1 MKKSKRKPNR--KAVRSMEIEEIE-------LLNSWIDSQKPES-GTNPLSFPPLGKK-E 49
M + + KP+ K+V++ E EE E + D + ES G F +
Sbjct: 18 MDEEQEKPSTSSKSVKNEEFEEFEDGEDVEDEEDEASDEDEEESEGEEGDEFKSSDDTPK 77
Query: 50 PIGRIGEDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGA 109
PI +I ED+ + + +F QL + L+ T +Q A +P L G DILG
Sbjct: 78 PI-QISEDNMT----TKKFSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGC 132
Query: 110 AKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSA 169
A+TG+GKTLAF IP+L+KL + +G + ++I++PTRELA Q+ + A+GK
Sbjct: 133 ARTGTGKTLAFAIPILQKLSVDPYG----IYALILTPTRELAFQIAEQFTALGKPITLKC 188
Query: 170 GLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCS---QLQILILDEADRIL 226
+++GGR + +E +++V TPGRL ++ P+ ++Q +LDEADR+L
Sbjct: 189 SVIVGGRSLIHQARELSERPHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRML 248
Query: 227 DVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRL 286
+ + L I + + RQT L SAT T ++ L R+S + P + + +T +RL
Sbjct: 249 EGQYNDQLKPIFESISEKRQTLLLSATITNNINMLHRVSTRKPYFFEDKGKDDESTVDRL 308
Query: 287 QQTAMIVPLEQKLDMLWSFIKAHLN----SKILVFLTSCKQVKYVFEAFKKLRPGIPLMC 342
+Q ++ P+ K L +K + S +++F +C++ + + F+ L G +
Sbjct: 309 EQKYVVCPVAVKDAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGL--GFRVGS 366
Query: 343 LYGRMKQDRRMAIYAQFCEKR-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRV 401
L+ ++ Q +R+A + F K V+ CTDVASRGLD VD VV + P+ +YIHRV
Sbjct: 367 LHSQIPQKQRLAALSAFRSKTLQVIICTDVASRGLDIPH-VDLVVNHNVPQCPKTYIHRV 425
Query: 402 GRTARYNSGGRSVLFLTPTEMKMLE--------KLREAKI-PIHFTKANTKRL 445
GR+AR G ++ F+T ++++L+ KL E K+ P H TK T+ L
Sbjct: 426 GRSARAGRFGSALSFVTQYDVELLQAVEQVIGKKLDELKVSPKHVTKYVTQVL 478
Score = 44 (20.5 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 528 AEKEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKK 584
A+KE +L + +K E N +++L + EDE L E MR R+ +K+
Sbjct: 480 AKKEAELKLENQKF--GEKKEINRRKELLMSGMDEDEADRHLEE--MRTRRMTNSKR 532
Score = 43 (20.2 bits), Expect = 2.9e-52, Sum P(2) = 2.9e-52
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 525 LDNAEKEDKLMISREK-LLPDNFTEENVDRDILETK 559
L+N + +K I+R K LL E+ DR + E +
Sbjct: 488 LENQKFGEKKEINRRKELLMSGMDEDEADRHLEEMR 523
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 526 (190.2 bits), Expect = 2.7e-52, Sum P(2) = 2.7e-52
Identities = 162/535 (30%), Positives = 268/535 (50%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F +L +S+ + G+ K T IQ A +P +L GRD+ +A TGSGKT AF +P LE+
Sbjct: 169 FMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLER 228
Query: 128 LYKERWGPEDGVGS--IIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEH 185
L + P+ + +I++PTRELA Q+ +++ + + + GL++GG + E
Sbjct: 229 LL---FRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVL 285
Query: 186 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHR 245
+ +I+V TPGR++ H+ + + D L +LILDEADR+L GF + +V PK R
Sbjct: 286 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRR 345
Query: 246 QTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLD--MLW 303
QT LFSAT T+ V++L +LSL P LS + S P ++ I + +L
Sbjct: 346 QTMLFSATMTEEVKELVKLSLNKPLRLSA-DPSARRPPGLTEEVVRIRRTREANQEAVLL 404
Query: 304 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR 363
S SK+++F + KQ + + L G+ L+G + Q +R+ F K+
Sbjct: 405 SLCTRTFKSKVIIF-SGTKQAAHRLKILFGLA-GLKAAELHGNLTQAQRLDSLELF-RKQ 461
Query: 364 SV--LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 421
V L TDVA+RGLD V V+ CP ++ SY+HRVGRTAR G +V F+T ++
Sbjct: 462 EVDFLIATDVAARGLDII-GVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSD 520
Query: 422 MKMLE--------KLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITY 473
+L+ KL+ IP ++ + + +A++ D + +KA + +
Sbjct: 521 RSLLKVIAKKVGSKLKSRVIPEQSIVKWSQIIDEMEDQYSAVISAERD-ERALRKAEMEF 579
Query: 474 LRSVHIQKDK-EVFDVTKLS--IDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNAEK 530
++ ++ + + E++ K + + E L + K N G++V D K
Sbjct: 580 AKAENMLEHRDEIYARPKRTWFMTEKEKKL-VAQAEKDSAGNPAGGELVSADRAEDLKMK 638
Query: 531 EDKLMISREKLLPDNFTEE-NVDRDILETKDIEDEGKADLLEDVMRATRVKKNKK 584
E K REK LP + R++LE + E+E + + ++ +R K KK
Sbjct: 639 E-KRKREREKNLPRKKRRKLEAAREMLEDNEGEEEEEDEEGDEKRGRSRGKDKKK 692
Score = 40 (19.1 bits), Expect = 2.7e-52, Sum P(2) = 2.7e-52
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 693 RRKKAKIYFDSDSDNDNDERKQNKDDNG 720
R+K+ K+ + DN+ ++ +D+ G
Sbjct: 651 RKKRRKLEAAREMLEDNEGEEEEEDEEG 678
Score = 38 (18.4 bits), Expect = 4.4e-52, Sum P(2) = 4.4e-52
Identities = 6/30 (20%), Positives = 19/30 (63%)
Query: 688 SMERGRRKKAKIYFDSDSDNDNDERKQNKD 717
++ R +R+K + + DN+ +E +++++
Sbjct: 648 NLPRKKRRKLEAAREMLEDNEGEEEEEDEE 677
>ASPGD|ASPL0000034540 [details] [associations]
symbol:spb4 species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0030686 "90S preribosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0000027 "ribosomal large
subunit assembly" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:BN001306 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:AACD01000052
HOGENOM:HOG000268803 KO:K14809 OMA:CACVEYW RefSeq:XP_660780.1
ProteinModelPortal:Q5B8F4 STRING:Q5B8F4
EnsemblFungi:CADANIAT00009893 GeneID:2873958 KEGG:ani:AN3176.2
OrthoDB:EOG46MFT3 Uniprot:Q5B8F4
Length = 638
Score = 404 (147.3 bits), Expect = 3.4e-52, Sum P(3) = 3.4e-52
Identities = 139/471 (29%), Positives = 220/471 (46%)
Query: 171 LLIGGRRDV--DMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQ--LQILILDEADRIL 226
LL+GG D+ N+LV TPGRLL+ + +P+ C Q ++L+LDEADR+L
Sbjct: 145 LLLGGSTSPAEDLSTFLKRSPNLLVATPGRLLELLS-SPHVYCPQSSFEMLVLDEADRLL 203
Query: 227 DVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTA----- 281
D+GFK+ L I+ +LPK R+T LFSA+ +++V + R+ L++P + V + +
Sbjct: 204 DLGFKETLQNILRRLPKQRRTGLFSASVSEAVDQIVRVGLRNPVKVVVKVKGASGVDDKR 263
Query: 282 TPNRLQQTAMIVPLEQKLDMLWSFIKA--HLNSKILVFLTSCKQVKYVFEAFKK-LRPGI 338
TP LQ T + P K L + + SK + F+++C V Y+ L
Sbjct: 264 TPASLQMTYLTQPPTGKFPALKHILNSVQPTPSKSIFFVSTCSGVDYLSVILPLILGNDF 323
Query: 339 PLMCLYGRMKQDRRMAIYAQFCEKRS--VLFCTDVASRGLDFNKAVDWVVQVDCPEDVAS 396
L+ L+G+ + R + +F + +L TDVASRGLD +VD VVQ+D P D +
Sbjct: 324 QLIPLHGKHPANVRQKNFNRFVNAHNPAILLTTDVASRGLDI-PSVDLVVQIDPPSDPKT 382
Query: 397 YIHRVGRTARYNSGGRSVLFLTP-TEMKMLEKLREAKIPI----H-FTKANTKRLQPVSG 450
+IHR GR R G SV+ L P E + L K P+ H T ++ +
Sbjct: 383 FIHRCGRAGRAGRRGLSVVLLHPGREEDYVSFLEVRKTPVAPFPHPITVSDAEAAAATE- 441
Query: 451 LLAALLVKYPDMQH-RAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIR 509
A +VK H R QKAF+++LRS + +F V L + + GL PK+
Sbjct: 442 -TARKVVKADRAIHDRGQKAFVSWLRSYSKHQASSIFRVADLDWEGLGKAWGLLKLPKMP 500
Query: 510 FLNQKKG-KMVPVKPVLDNAEKEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKAD 568
L KG K + V+ D +DK R L E + + + E ++
Sbjct: 501 ELKNFKGDKTLGVQMDWDTYAYKDKQREKRRLELLQEMAESGQQQTTNKKRPNETVAWSN 560
Query: 569 LLEDVMRATRVKKNKKLKINVHRPLGTRLVFDEECNTVPPLAMLADTKNAN 619
E+ R + K+ ++ R ++ +E+ + ML + N
Sbjct: 561 NAEN--RNKKAKRRDMKQVRQERKRWEKMTEEEKKKALETEQMLEQIRAKN 609
Score = 202 (76.2 bits), Expect = 3.4e-52, Sum P(3) = 3.4e-52
Identities = 46/123 (37%), Positives = 75/123 (60%)
Query: 72 PISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYK- 130
P+S+ + GF +MT +Q +++P + +D++ A TGSGKTL+F+IPV+EKL +
Sbjct: 20 PLSEWVLDAVSSMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPVVEKLLRL 79
Query: 131 ERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLL-IGGRRDVDMEKEHVNEL 189
E + VG+II+SPTRELA Q+++VL ++ H SA ++ DV K + L
Sbjct: 80 EEPIKKHHVGAIIVSPTRELASQIYNVLTSLLAFHPASAAVINTSETEDVPRPKHSSSVL 139
Query: 190 NIL 192
++
Sbjct: 140 RVV 142
Score = 37 (18.1 bits), Expect = 3.4e-52, Sum P(3) = 3.4e-52
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 690 ERGRRKKAKIYFDSDSDNDNDE 711
E+ R K+A D D++ DE
Sbjct: 611 EQRRLKRAAAKADKDAEEGGDE 632
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 121/338 (35%), Positives = 201/338 (59%)
Query: 92 IQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELA 151
IQR ++P +L G+D++G A+TGSGKT AF +P+L L + P+ +++++PTRELA
Sbjct: 87 IQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLEN---PQRYF-ALVLTPTRELA 142
Query: 152 DQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDC 211
Q+ + +A+G +++GG V + + +I++ TPGRL+ H++ F+
Sbjct: 143 FQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNL 202
Query: 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQY 271
++ L++DEADRIL++ F+ L+ I+ LP+ R+TFLFSAT TK V+ L R SLKDP
Sbjct: 203 KAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVK 262
Query: 272 LSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAF 331
+ V + T +LQQ+ + +P++ K L + + ++F ++C
Sbjct: 263 VEVSNKYQTV--EQLQQSYLFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALML 320
Query: 332 KKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK-RSVLFCTDVASRGLDFNKAVDWVVQVDC 390
+ L G+ + L+G+M Q++R+A +F K RS+L TDVASRGLD VD VV D
Sbjct: 321 RAL--GLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPH-VDVVVNFDI 377
Query: 391 PEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 428
P YIHRVGRTAR G+++ ++ ++++ +++
Sbjct: 378 PTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRI 415
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
Identities = 127/372 (34%), Positives = 206/372 (55%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F +L + + K+ + K T IQ ++P +L G DI+G A+TGSGKT AF IP+L +
Sbjct: 83 FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNR 142
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
L W ++ + I++PTRELA Q+ + ++G + ++GG +D ++ +
Sbjct: 143 L----WHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR 198
Query: 188 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP-KHRQ 246
+ +I++ TPGRL+ H++ T F +L+ L++DEADR+LD+ F L+ I+ +P + R
Sbjct: 199 KPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERT 258
Query: 247 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFI 306
T+LFSAT T + L R SL +P +V + T + L QT M+VP K L +
Sbjct: 259 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTV--DTLVQTLMVVPGGLKNTYLIYLL 316
Query: 307 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-CEKRSV 365
+ +++F + + + L L+G + Q++RM F KRS+
Sbjct: 317 NEFIGKTMIIFTRTKANAERLSGLCNLLE--FSATALHGDLNQNQRMGSLDLFKAGKRSI 374
Query: 366 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 425
L TDVA+RGLD +VD VV D P D SYIHRVGRTAR G+S+ ++ +++++
Sbjct: 375 LVATDVAARGLDI-PSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELI 433
Query: 426 EKLREA---KIP 434
++ E K+P
Sbjct: 434 LRIEEVLGKKLP 445
>DICTYBASE|DDB_G0270396 [details] [associations]
symbol:ddx49 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
Length = 508
Score = 515 (186.3 bits), Expect = 4.8e-52, Sum P(2) = 4.8e-52
Identities = 130/366 (35%), Positives = 199/366 (54%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F++L ++ + K GF ++IQ ++P L GRDI+ +AKTGSGKT +F IP+L +
Sbjct: 6 FEELGLTTWLVANCKQLGFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPILNQ 65
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
L ++ +G V ++I++PTRELA Q+ + A+G N + ++IGG +V
Sbjct: 66 LSEDPYG----VFAVILTPTRELAVQIGEQFNAIGAPMNVNCSVVIGGIDNVTQALILDK 121
Query: 188 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP--KHR 245
+I+V TPGRL H++ + L+LDEADR+L F+ + +I+ LP + R
Sbjct: 122 RPHIIVATPGRLASHLNNGLKIALKFCKFLVLDEADRLLGEDFELEIASILEHLPPPEKR 181
Query: 246 QTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSF 305
QT LFSAT TK++ L ++L P + S T + L+Q + +P K L
Sbjct: 182 QTLLFSATMTKNLTKLDSIALNKP--FIFEDNSKYDTVDTLKQEYIYMPAPTKDCYLVYI 239
Query: 306 IKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRS 364
+K H S +VF+ +C V+ V KL IP + L+ + Q R+A F K
Sbjct: 240 LKKHEGSSAIVFVNNCYAVEAVKGMLNKL--DIPSVSLHSFLDQKSRLAALKTFKSGKVK 297
Query: 365 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM 424
VL TDVASRGLD V V+ YIHRVGRTAR+ GR++ F+TP ++ +
Sbjct: 298 VLVATDVASRGLDIPD-VQIVINYKLSNSSKDYIHRVGRTARFGRSGRAISFITPHDVSL 356
Query: 425 LEKLRE 430
++ + E
Sbjct: 357 IKGIEE 362
Score = 42 (19.8 bits), Expect = 4.8e-52, Sum P(2) = 4.8e-52
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 696 KAKIYFDSDSDNDNDERKQNKDDNGPNIDSI 726
K K +++ +N+N++ K K +N I I
Sbjct: 425 KEKFENNNNDNNNNNKTKTTKPENKKEITKI 455
>UNIPROTKB|I3LQ10 [details] [associations]
symbol:LOC100626268 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 Ensembl:ENSSSCT00000028964 OMA:RYLVALC
Uniprot:I3LQ10
Length = 684
Score = 505 (182.8 bits), Expect = 6.1e-52, Sum P(2) = 6.1e-52
Identities = 134/382 (35%), Positives = 205/382 (53%)
Query: 47 KKEPIGRIGEDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDI 106
K + G ED+ S+Y + F + +S+ + GF + T IQ+A +P L G+DI
Sbjct: 193 KGQEAGGFFEDA-SQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDI 251
Query: 107 LGAAKTGSGKTLAFVIPVLEKL-YKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH 165
A TG+GKT AF +PVLE+L YK R P V +++ PTREL Q+ V K + +
Sbjct: 252 CACAATGTGKTAAFALPVLERLIYKPRQAPVTRV--LVLVPTRELGIQVHSVTKQLAQSS 309
Query: 166 ----NFSAGLLIGGRRDVDMEKEHVNEL--NILVCTPGRLLQHMDETPNFDCSQLQILIL 219
+GL GG DV ++ + +IL+ TPGRL+ H+ P+F S +++LIL
Sbjct: 310 LCVITTISGLFAGGL-DVKSQEAALRAAXPDILIATPGRLIDHLHNCPSFHLSSIEVLIL 368
Query: 220 DEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESV 279
DEADR+LD F++ + I+ HRQT LFSAT T V+DLA +SLK+P + V+ +
Sbjct: 369 DEADRMLDEYFEEQMKEIIRMCSLHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTD 428
Query: 280 TATPNRLQQTAMIVPLEQ--KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPG 337
A P Q+ I P + + ++ + + +++F + KQ + + G
Sbjct: 429 VA-PFLRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLM--G 485
Query: 338 IPLMCLYGRMKQDRRM--AIYAQFCEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVA 395
+ + L+G + Q +R A++ E+ +L TDVA+RGLD + V V+ P +
Sbjct: 486 LQVGELHGNLSQTQRXLEALWRFKDEQIDILVATDVAARGLDI-EGVKTVINFTMPNTIK 544
Query: 396 SYIHRVGRTARYNSGGRSVLFL 417
Y+HRVGRTAR GRSV L
Sbjct: 545 HYVHRVGRTARAGRAGRSVSLL 566
Score = 51 (23.0 bits), Expect = 6.1e-52, Sum P(2) = 6.1e-52
Identities = 24/81 (29%), Positives = 37/81 (45%)
Query: 14 RSMEIEEIELLNSWIDSQKPESGTNPLSFPPLGKKEPIGRIGEDSFSKYVGS-----TR- 67
R E +E + NS D ++ + G+ P L K+ G GE+S + Y + T+
Sbjct: 122 RKTEDKEAKSGNS--DEKEVKEGSEPEEQEDLEGKDEEGSEGEESETDYSSADENILTKA 179
Query: 68 FDQLPIS--KKTKSGLKDAGF 86
D L + KK K G + GF
Sbjct: 180 VDTLRVKERKKKKKGQEAGGF 200
>TAIR|locus:2038431 [details] [associations]
symbol:AT1G63250 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 EMBL:AC022355 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268799 UniGene:At.52694 ProtClustDB:CLSN2713541
IPI:IPI00538833 PIR:C96658 RefSeq:NP_176514.1 UniGene:At.36158
ProteinModelPortal:Q9C8S9 SMR:Q9C8S9 PaxDb:Q9C8S9 PRIDE:Q9C8S9
EnsemblPlants:AT1G63250.1 GeneID:842631 KEGG:ath:AT1G63250
GeneFarm:1027 TAIR:At1g63250 InParanoid:Q9C8S9 OMA:TSSRAHI
PhylomeDB:Q9C8S9 Genevestigator:Q9C8S9 GermOnline:AT1G63250
Uniprot:Q9C8S9
Length = 798
Score = 534 (193.0 bits), Expect = 4.2e-51, P = 4.2e-51
Identities = 146/484 (30%), Positives = 253/484 (52%)
Query: 45 LGKKEPIGRIGEDSFSKY---VGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSL 101
L K++ + + E+ + + RFD+ IS T L +G +KMT +Q A+L L
Sbjct: 304 LSKRKSVDNVMEEKQEPHDSIYSAKRFDESCISPLTLKALSASGILKMTRVQDATLSECL 363
Query: 102 CGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSI------IISPTRELADQLF 155
G+D L AKTG+GK++AF++P +E + K GV + I+ PTRELA Q+
Sbjct: 364 DGKDALVKAKTGTGKSMAFLLPAIETVLKAM-NSGKGVNKVAPIFALILCPTRELASQIA 422
Query: 156 DVLKAVGKHHN-FSAGLLIGGRR-DVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCS- 212
KA+ K H+ LIGG R +D ++ IL+ TPGRLL H++
Sbjct: 423 AEGKALLKFHDGIGVQTLIGGTRFKLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRL 482
Query: 213 -QLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLK-DPQ 270
L++ I+DEAD +LD+GF++ + I+ LP+ RQ+ LFSAT K V+ +++L LK D
Sbjct: 483 MALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHS 542
Query: 271 YLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNS----KILVFLTSCKQVKY 326
Y+ T ++++Q+ ++ P E ++ +K H+N+ KI+VF ++
Sbjct: 543 YIDTIGLGCVETHDKVRQSCIVAPHESHFHLVPHLLKEHINNTPDYKIIVFCSTGMVTSL 602
Query: 327 VFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK-RSVLFCTDVASRGLDFNKAVDWV 385
++ ++++ + + ++ R Q R + +F E R +L +DV++RG+++ V V
Sbjct: 603 MYTLLREMK--LNVREIHARKPQLHRTRVSDEFKESNRLILVTSDVSARGMNYPD-VTLV 659
Query: 386 VQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKI-PIHFTKANTKR 444
+QV P D YIHR+GRT R GG +L + P E L++L++ + PI ++
Sbjct: 660 IQVGIPSDREQYIHRLGRTGREGKGGEGLLLIAPWERYFLDELKDLPLEPIPAPDLDSIV 719
Query: 445 LQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPM 504
V +A + ++ A A++ Y SV + ++ + +L+ + F S+GL
Sbjct: 720 KHQVDQSMAKIDTS---IKEAAYHAWLGYYNSVR-ETGRDKTTLAELA-NRFCHSIGLEK 774
Query: 505 TPKI 508
P +
Sbjct: 775 PPAL 778
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 129/374 (34%), Positives = 209/374 (55%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F +L I + ++ G+ T IQ ++P +L GRD++G A+TGSGKT AF +P+L+
Sbjct: 48 FKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQA 107
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV- 186
L + P+ G ++++PTRELA Q+ + +G +++GG +DM + +
Sbjct: 108 LME---APQTLFG-LVLAPTRELAYQISQAFETLGSTIGVRCAVIVGG---MDMVAQSIA 160
Query: 187 --NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKH 244
+ +I+V TPGRLL H++ T F L+ L +DEADR+LD+ F ++L+ I+ LP+
Sbjct: 161 LGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRILPRT 220
Query: 245 RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWS 304
R T+LFSAT + V+ L R SL +P +SV S T + LQ + + +P + K L
Sbjct: 221 RHTYLFSATMSTKVESLQRASLSNPVRVSV--SSKYQTVSTLQSSYICIPHKHKNLYLVY 278
Query: 305 FIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK-R 363
+ ++F T+ + + V AF G + L+G++ Q R+ +F + R
Sbjct: 279 LLNEFAGQSAIIFTTTVHETQRV--AFMLRALGFGAIPLHGQLSQSARLGALGKFRSRSR 336
Query: 364 SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 423
+L TDVA+RGLD +VD V D P D +YIHRVGRTAR G ++ F+T +++
Sbjct: 337 DILVATDVAARGLDI-PSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQYDVE 395
Query: 424 MLEKLREA---KIP 434
+ ++ A K+P
Sbjct: 396 VWLRIEHALSKKLP 409
>ASPGD|ASPL0000062195 [details] [associations]
symbol:AN10125 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
Length = 814
Score = 531 (192.0 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 130/363 (35%), Positives = 198/363 (54%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F + +S+ GL F T IQ+ ++P +L G+DI+G+A TGSGKT AFV+P+LE+
Sbjct: 300 FQEFNLSRPILRGLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILER 359
Query: 128 L-YKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV 186
L ++ R P V I+ PTRELA Q ++V + + + + L+GG + E
Sbjct: 360 LLFRPRKVPTSRVA--ILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLK 417
Query: 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246
++++ TPGR + HM + +F L+IL+LDEADR+L+ GF LN I++ +PK RQ
Sbjct: 418 KRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQ 477
Query: 247 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP--LEQKLDMLWS 304
T LFSAT T SV L R+ L P L V + TA +Q+ + P +++L L
Sbjct: 478 TMLFSATMTDSVDKLIRVGLNRPVRLMVDTKKNTAV-TLVQEFVRLRPGREDKRLGYLLH 536
Query: 305 FIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR- 363
K +++VF K+ V F L G+ L+G M Q++R+ F +
Sbjct: 537 LCKEVYTGRVIVFFRQKKEAHRVRIVFGLL--GLKAAELHGSMSQEQRIKSVESFRDGNV 594
Query: 364 SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 423
+ L TD+ASRGLD K V+ V+ + P+ Y+HRVGRTAR GR+ + K
Sbjct: 595 NFLLATDLASRGLDI-KGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACTIAAEPDRK 653
Query: 424 MLE 426
+++
Sbjct: 654 VVK 656
>GENEDB_PFALCIPARUM|PFB0860c [details] [associations]
symbol:PFB0860c "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AE001362
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802 HSSP:P10081
KO:K14777 PIR:C71604 RefSeq:XP_001349688.1
ProteinModelPortal:O96264 EnsemblProtists:PFB0860c:mRNA
GeneID:812770 KEGG:pfa:PFB0860c EuPathDB:PlasmoDB:PF3D7_0218400
OMA:KHRAKRV ProtClustDB:CLSZ2432676 Uniprot:O96264
Length = 562
Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
Identities = 125/371 (33%), Positives = 206/371 (55%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F+ L I ++ +K+ G+ K T+IQR LPH+ +DI+G ++TGSGKT F+IP+L+
Sbjct: 158 FEDLNICEEILESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFIIPILQD 217
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
L + +++ISPTREL Q+ +A+G + + + GG V
Sbjct: 218 LKVNK----QSFYALVISPTRELCIQISQNFQALGMNLLINICTIYGGVDIVTQSLNLAK 273
Query: 188 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQT 247
+ N++V TPGR+L H++ T F+ L+ L+ DEAD++L F+ ++N ++ LP +R T
Sbjct: 274 KPNVIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSQDFESSINKLLLILPPNRIT 333
Query: 248 FLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIK 307
FLFSAT TK+V L + LK+P + V + +T + L +T + +PL+ K L S
Sbjct: 334 FLFSATMTKNVAKLKKACLKNP--VKVEVSNKYSTVSTLIETYIFLPLKYKYTYLSSLCF 391
Query: 308 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-CEKRSVL 366
+ I++F +C + + + L G+ +CL+G++ Q++R++ F K ++L
Sbjct: 392 HYQTRNIIIFTNTCATAQKLNFFCRNL--GLKSICLHGKLTQNQRLSSLNSFKVNKYNIL 449
Query: 367 FCTDVASRGLDFNKAVDWVVQVD-CPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK-- 423
T V +RGLD + V+ D C YIHRVGRTAR G+S+ F+T +++
Sbjct: 450 ISTQVGARGLDLQD-IKIVINFDIC--SCKEYIHRVGRTARAGRSGKSITFVTQYDVENF 506
Query: 424 -MLEKLREAKI 433
+EK KI
Sbjct: 507 LAIEKQLNKKI 517
>UNIPROTKB|O96264 [details] [associations]
symbol:PFB0860c "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AE001362 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 HSSP:P10081 KO:K14777 PIR:C71604
RefSeq:XP_001349688.1 ProteinModelPortal:O96264
EnsemblProtists:PFB0860c:mRNA GeneID:812770 KEGG:pfa:PFB0860c
EuPathDB:PlasmoDB:PF3D7_0218400 OMA:KHRAKRV ProtClustDB:CLSZ2432676
Uniprot:O96264
Length = 562
Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
Identities = 125/371 (33%), Positives = 206/371 (55%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F+ L I ++ +K+ G+ K T+IQR LPH+ +DI+G ++TGSGKT F+IP+L+
Sbjct: 158 FEDLNICEEILESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFIIPILQD 217
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
L + +++ISPTREL Q+ +A+G + + + GG V
Sbjct: 218 LKVNK----QSFYALVISPTRELCIQISQNFQALGMNLLINICTIYGGVDIVTQSLNLAK 273
Query: 188 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQT 247
+ N++V TPGR+L H++ T F+ L+ L+ DEAD++L F+ ++N ++ LP +R T
Sbjct: 274 KPNVIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSQDFESSINKLLLILPPNRIT 333
Query: 248 FLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIK 307
FLFSAT TK+V L + LK+P + V + +T + L +T + +PL+ K L S
Sbjct: 334 FLFSATMTKNVAKLKKACLKNP--VKVEVSNKYSTVSTLIETYIFLPLKYKYTYLSSLCF 391
Query: 308 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-CEKRSVL 366
+ I++F +C + + + L G+ +CL+G++ Q++R++ F K ++L
Sbjct: 392 HYQTRNIIIFTNTCATAQKLNFFCRNL--GLKSICLHGKLTQNQRLSSLNSFKVNKYNIL 449
Query: 367 FCTDVASRGLDFNKAVDWVVQVD-CPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK-- 423
T V +RGLD + V+ D C YIHRVGRTAR G+S+ F+T +++
Sbjct: 450 ISTQVGARGLDLQD-IKIVINFDIC--SCKEYIHRVGRTARAGRSGKSITFVTQYDVENF 506
Query: 424 -MLEKLREAKI 433
+EK KI
Sbjct: 507 LAIEKQLNKKI 517
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 125/367 (34%), Positives = 199/367 (54%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F +L + + + GF T IQ+ ++P L RD++G A+TGSGKT AF +PV+++
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
L W +++++PTRELA Q+ + +A+G + +++GG V
Sbjct: 108 L----WNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSK 163
Query: 188 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQT 247
+ ++LVCTPGRL+ H++ T F L+ LI+DEADR+LD+ F ++ I+ +P R+T
Sbjct: 164 KPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRT 223
Query: 248 FLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIK 307
LFSAT T V+ L R SL P ++V S +T + L Q + P + K L +
Sbjct: 224 LLFSATMTSKVEKLQRASLHQPVRVAV--SSKFSTVDTLIQRYLFFPFKHKDTYLVYLVN 281
Query: 308 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVL 366
+ I++F + + + + L G + L+G++ Q R+ +F RS L
Sbjct: 282 ELAGNSIIIFARTVNDTQRLAILLRTL--GFSAIPLHGQLSQSNRLGALNKFKSGARSTL 339
Query: 367 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLE 426
TDVA+RGLD VD V+ D P D +YIHRVGRTAR G+S+ +T +++
Sbjct: 340 VATDVAARGLDI-PLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYDLEPFL 398
Query: 427 KLREAKI 433
++ EA I
Sbjct: 399 RI-EATI 404
>UNIPROTKB|F1NYX0 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
ArrayExpress:F1NYX0 Uniprot:F1NYX0
Length = 482
Score = 497 (180.0 bits), Expect = 4.7e-50, Sum P(2) = 4.7e-50
Identities = 124/375 (33%), Positives = 199/375 (53%)
Query: 64 GSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIP 123
G F +L ++ + G + T +Q + +P L GRD LG AKTGSGKT AFV+P
Sbjct: 3 GMAAFRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLP 62
Query: 124 VLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEK 183
VL+ L ++ +G + ++++PTRELA Q+ + + +GK +++GG V
Sbjct: 63 VLQVLSEDPYG----IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQAL 118
Query: 184 EHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG---FKKALNAIVSQ 240
E + ++++ TPGRL H+ + F +L+ L+LDEADR+L+ G F L I+
Sbjct: 119 ELSRKPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEA 178
Query: 241 LPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK-- 298
+P RQT LFSAT T ++ +L L++ P + E T + L Q ++VP K
Sbjct: 179 VPARRQTLLFSATLTDTLNELKSLAMNRPFFWEAASE--VRTVDELDQRYLLVPEAVKDA 236
Query: 299 --LDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIY 356
+ ++ +F H + I++F +CK+ + + +K P + L+ MKQ +R A
Sbjct: 237 YLVHLIQTFQDEHEDWSIIIFTKTCKECQILNMMLRKF--SFPSVALHSMMKQRQRFAAL 294
Query: 357 AQFCEKR-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVL 415
A+F +L TDVA+RGLD V V+ + P YIHRVGRTAR G S+
Sbjct: 295 AKFKSSIFKILIATDVAARGLDI-PTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISIT 353
Query: 416 FLTPTEMKMLEKLRE 430
+T ++ ++ + E
Sbjct: 354 MVTQYDIHLVHAIEE 368
Score = 41 (19.5 bits), Expect = 4.7e-50, Sum P(2) = 4.7e-50
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 555 ILETKD--IEDEGKADLLEDVMRATRVKKNKKLKINVHRPL 593
ILE KD +E++ KA+L A KKN K + V + L
Sbjct: 420 ILEGKDPDLEEKRKAEL------AKIKKKNNKFREKVQQTL 454
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
Identities = 156/502 (31%), Positives = 255/502 (50%)
Query: 66 TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVL 125
T F L + L D G+ K + IQ +PH L GRD+LG A+TGSGKT AF +P+L
Sbjct: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65
Query: 126 EKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKH-HNFSAGLLIGGRR-DVDMEK 183
+ L E P+ ++++PTRELA Q+ + + KH + L GG+R DV +
Sbjct: 66 QNLDPELKAPQ----ILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121
Query: 184 EHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPK 243
I+V TPGRLL H+ + D S+L L+LDEAD +L +GF + + I++Q+P+
Sbjct: 122 LRQGP-QIVVGTPGRLLDHL-KRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179
Query: 244 HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLW 303
QT LFSAT ++++ + R +K+PQ + + + SVT P+ + Q+ V +K + L
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRI-QSSVTTRPD-ISQSYWTVWGMRKNEALV 237
Query: 304 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR 363
F++A ++F+ + V EA + R G L G M Q R + + R
Sbjct: 238 RFLEAEDFDAAIIFVRTKNATLEVAEALE--RNGYNSAALNGDMNQALREQTLERLKDGR 295
Query: 364 -SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 422
+L TDVA+RGLD + + VV D P D SY+HR+GRT R GR++LF+ E
Sbjct: 296 LDILIATDVAARGLDVER-ISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRER 354
Query: 423 KMLEKL-REAKIPIHFTKANTKRLQPVSGLLAALLVKYP-DMQHRAQKAFITYLRSVHIQ 480
++L + R K+ I + L L L K+ +Q + + + + R++ +
Sbjct: 355 RLLRNIERTMKLTIPEVELPNAEL-----LGKRRLEKFAAKVQQQLESSDLDQYRAL-LS 408
Query: 481 KDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNAEKEDKLMISREK 540
K + + +L ++ +A+L L M R L P++P + +++D+ R
Sbjct: 409 KIQPTAEGEELDLETLAAAL-LKMAQGERTLIVPPD--APMRPKREFRDRDDRGPRDRND 465
Query: 541 LLPDNFTEENVDRDILETKDIE 562
P E+ R+ + D++
Sbjct: 466 RGPRGDREDRPRRERRDVGDMQ 487
>SGD|S000003931 [details] [associations]
symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
assembly and function" species:4932 "Saccharomyces cerevisiae"
[GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
Length = 752
Score = 519 (187.8 bits), Expect = 1.1e-49, P = 1.1e-49
Identities = 129/357 (36%), Positives = 199/357 (55%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F+ L +S+ GL G+VK + IQ A++P +L G+DI+ A TGSGKT AF+IP++E+
Sbjct: 233 FNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 292
Query: 128 L-YKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKH-HNFSAGLLIGGRRDVDMEKEH 185
L YK V I++ PTRELA Q+ DV K + + + GL +GG E+
Sbjct: 293 LLYKPAKIASTRV--IVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQML 350
Query: 186 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHR 245
+ +I++ TPGR + H+ + +F+ ++IL++DEADR+L+ GF+ LN I+ LP +R
Sbjct: 351 KSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNR 410
Query: 246 QTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLD--MLW 303
Q LFSAT ++ L LSLK P + + AT +L Q + + L +L+
Sbjct: 411 QNLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAAT--KLTQEFVRIRKRDHLKPALLF 468
Query: 304 SFIKA--HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 361
+ I+ K +V + K+ + L G+ + L+G + Q++R+ +F
Sbjct: 469 NLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLL-GMSVGELHGSLTQEQRLDSVNKFKN 527
Query: 362 KR-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFL 417
VL CTD+ASRGLD K ++ V+ D P+ Y+HRVGRTAR GRSV F+
Sbjct: 528 LEVPVLICTDLASRGLDIPK-IEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFV 583
>WB|WBGene00022148 [details] [associations]
symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
Length = 739
Score = 512 (185.3 bits), Expect = 5.4e-49, P = 5.4e-49
Identities = 120/367 (32%), Positives = 212/367 (57%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F+Q+ +S++ AG+ T IQ+A +P +L G+DI A TG+GKT AFV+P+LE+
Sbjct: 150 FEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILER 209
Query: 128 L-YKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV 186
+ Y+ + V +++ PTRELA Q+F V + + L GG D+ ++ +
Sbjct: 210 MIYRPKGASCTRV--LVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGL-DLKAQEAAL 266
Query: 187 NE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHR 245
+++V TPGRL+ H+ +P+F+ S +++L+LDEADR+L+ F+ +N ++ ++R
Sbjct: 267 RSGPDVVVATPGRLIDHLHNSPSFNLSNIEVLVLDEADRMLEEAFRDQMNELIRLCAQNR 326
Query: 246 QTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLD---ML 302
QT LFSAT T+ + +LA +SL+ P + ++E + TA +L+Q + + ++ D M+
Sbjct: 327 QTLLFSATMTEEIDELASMSLQKPVKIFINENTDTAL--KLRQEFIRIRAGRETDREAMV 384
Query: 303 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK 362
+ + + +VF+ + K + + L GI + + + Q +R+ ++F +
Sbjct: 385 AALVTRTFQTNTIVFVRTKKDCQRMQILLGLL--GIKVGQMQSSLTQGQRIESLSKFKKA 442
Query: 363 R-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 421
VL TD+ASRGLD + V V+ ++ P+ + YIHRVGRTAR GRS+ + E
Sbjct: 443 EIDVLVSTDLASRGLDI-EGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEDE 501
Query: 422 MKMLEKL 428
K+L+++
Sbjct: 502 RKLLKEI 508
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 513 (185.6 bits), Expect = 5.6e-49, P = 5.6e-49
Identities = 129/363 (35%), Positives = 192/363 (52%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F + +S+ GL + GF T IQ ++P +L G+DI+GAA TGSGKT AF++P+LE+
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 128 L-YKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV 186
L Y+ + P V +I+ PTRELA Q V + + L IGG E+E
Sbjct: 321 LLYRPKKVPTTRV--LILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELR 378
Query: 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246
+I++ TPGR + HM + F ++I+++DEADR+L+ GF LN I+ PK RQ
Sbjct: 379 KRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQ 438
Query: 247 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLD--MLWS 304
T LFSAT T V DL RLSL P + V + TA Q+ + P + L ML
Sbjct: 439 TMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKL-LTQEFVRVRPQRELLRPAMLIY 497
Query: 305 FIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KR 363
K + + ++F S K + L + ++G + Q++R+ F + K
Sbjct: 498 LCKELFHRRTIIFFRS-KAFAHKMRVIFGLL-SLNATEIHGSLSQEQRVRALEDFRDGKC 555
Query: 364 SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 423
+ L TDVASRG+D K ++ V+ + P Y+HRVGRTAR GR++ + K
Sbjct: 556 NYLLATDVASRGIDI-KGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRK 614
Query: 424 MLE 426
+L+
Sbjct: 615 VLK 617
>ZFIN|ZDB-GENE-031030-3 [details] [associations]
symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
Length = 468
Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
Identities = 127/371 (34%), Positives = 202/371 (54%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F+ L +S+ K G + T +Q +P L GRD +G AKTGSGKT AFV+PVL+K
Sbjct: 4 FESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPVLQK 63
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
L ++ +G V ++++PTRELA Q+ + + +GK +++GG V E
Sbjct: 64 LSEDPYG----VFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLELSK 119
Query: 188 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG---FKKALNAIVSQLPKH 244
+ +++V TPGRL H+ + + +++Q LI+DEADR+L+ G F K L I+S +P
Sbjct: 120 KPHVVVATPGRLADHIRSSDTINLNRIQFLIMDEADRLLEQGCTDFTKDLEVILSAVPAK 179
Query: 245 RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK----LD 300
RQT LFSAT T ++Q L +++ P + H+ V T L Q ++ P + K +
Sbjct: 180 RQTLLFSATLTDTLQQLQSIAMNRPFFWE-HKSDVQ-TVEELDQRFILTPEKVKDAYLVH 237
Query: 301 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFC 360
++ +F H + I++F +CK + + ++ P + L+ MKQ +R A A+F
Sbjct: 238 LIQTFQDEHDDWSIIIFTNTCKSCQILTMMLREFN--FPTISLHSMMKQRQRFANLAKFK 295
Query: 361 EKR-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTP 419
+L TDVA+RGLD V V+ + P YIHRVGRTAR G S+ +T
Sbjct: 296 SNVFKILIATDVAARGLDI-PTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQ 354
Query: 420 TEMKMLEKLRE 430
++ ++ + E
Sbjct: 355 YDIHLINAIEE 365
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 481 (174.4 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 116/382 (30%), Positives = 203/382 (53%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F +SK+ + L G+ T++Q +P +L +D++ ++TGSGKT +F IP+ E
Sbjct: 6 FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
+ E P+ +++++PTRELA Q+ + + +G+ A + G + E
Sbjct: 66 VEWEENKPQ----ALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ 121
Query: 188 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQT 247
+ +I+V TPGR+L H+ E +L+ L++DEAD +L++GF + AI+ +LP R T
Sbjct: 122 KTHIVVGTPGRVLDHI-EKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMT 180
Query: 248 FLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIK 307
LFSAT + V+ L+R + P ++ + +T ++++ T V E+KL +L
Sbjct: 181 MLFSATLPEDVERLSRTYMNAPTHIEIKAAGITT--DKIEHTLFEVREEEKLSLLKDVTT 238
Query: 308 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVL 366
++F + + V +V+ ++ P ++G M Q+ R + F + K L
Sbjct: 239 IENPDSCIIFCRTQENVDHVYRQLDRVN--YPCDKIHGGMVQEDRFGVMDDFRKGKFRYL 296
Query: 367 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLE 426
TDVA+RG+D + + V+ D P + SY+HR GRT R + G+++ F+TP E + LE
Sbjct: 297 VATDVAARGIDIDN-ITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLE 355
Query: 427 KLREAKIPIHFTKANTKRLQPV 448
++ EA I KAN + V
Sbjct: 356 EI-EAYIGFAIPKANAPSKEEV 376
Score = 45 (20.9 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 565 GKADLLEDVMRATRVKKNKKLKIN 588
GK L+ VMR T +K K+LK++
Sbjct: 455 GKGPLVLKVMRNTTIK-GKQLKVH 477
Score = 41 (19.5 bits), Expect = 3.0e-48, Sum P(2) = 3.0e-48
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 564 EGKADLLEDVMRATRVKKNKKLKIN 588
+GKA E + +KK+K IN
Sbjct: 378 KGKAAFEEKIQAKPTIKKDKSADIN 402
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 481 (174.4 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 116/382 (30%), Positives = 203/382 (53%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F +SK+ + L G+ T++Q +P +L +D++ ++TGSGKT +F IP+ E
Sbjct: 6 FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
+ E P+ +++++PTRELA Q+ + + +G+ A + G + E
Sbjct: 66 VEWEENKPQ----ALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ 121
Query: 188 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQT 247
+ +I+V TPGR+L H+ E +L+ L++DEAD +L++GF + AI+ +LP R T
Sbjct: 122 KTHIVVGTPGRVLDHI-EKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMT 180
Query: 248 FLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIK 307
LFSAT + V+ L+R + P ++ + +T ++++ T V E+KL +L
Sbjct: 181 MLFSATLPEDVERLSRTYMNAPTHIEIKAAGITT--DKIEHTLFEVREEEKLSLLKDVTT 238
Query: 308 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVL 366
++F + + V +V+ ++ P ++G M Q+ R + F + K L
Sbjct: 239 IENPDSCIIFCRTQENVDHVYRQLDRVN--YPCDKIHGGMVQEDRFGVMDDFRKGKFRYL 296
Query: 367 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLE 426
TDVA+RG+D + + V+ D P + SY+HR GRT R + G+++ F+TP E + LE
Sbjct: 297 VATDVAARGIDIDN-ITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLE 355
Query: 427 KLREAKIPIHFTKANTKRLQPV 448
++ EA I KAN + V
Sbjct: 356 EI-EAYIGFAIPKANAPSKEEV 376
Score = 45 (20.9 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 565 GKADLLEDVMRATRVKKNKKLKIN 588
GK L+ VMR T +K K+LK++
Sbjct: 455 GKGPLVLKVMRNTTIK-GKQLKVH 477
Score = 41 (19.5 bits), Expect = 3.0e-48, Sum P(2) = 3.0e-48
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 564 EGKADLLEDVMRATRVKKNKKLKIN 588
+GKA E + +KK+K IN
Sbjct: 378 KGKAAFEEKIQAKPTIKKDKSADIN 402
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 483 (175.1 bits), Expect = 2.7e-48, Sum P(2) = 2.7e-48
Identities = 121/377 (32%), Positives = 200/377 (53%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F L +S+ ++ AG+ + T +Q+ ++P L GRD++ AA+TG+GKT F +P+LE+
Sbjct: 3 FASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62
Query: 128 LY-------KERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVD 180
L+ +R GP ++++PTRELA Q+ D K + F + + GG
Sbjct: 63 LFPNGHPDKSQRHGPRQP-RVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMNP 121
Query: 181 MEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ 240
+ +++LV PGRLL + + D S ++IL+LDEADR+LD+GF + ++++
Sbjct: 122 QVQAMARGVDVLVACPGRLLDLAGQG-SVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180
Query: 241 LPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLD 300
LP RQ LFSAT +K + DLA L +P+ + V + T R++Q +P K
Sbjct: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTV--ERIEQRVFRLPASHKRA 238
Query: 301 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF- 359
+L I A ++LVF + + E K G+ + ++G Q+ R A F
Sbjct: 239 LLAHLITAGAWEQVLVFTRTKHGANRLAEYLDK--HGLSAVAIHGNKSQNARTKALADFK 296
Query: 360 CEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTP 419
+ +L TD+A+RGLD ++ + VV + P Y+HR+GRT R G ++ + P
Sbjct: 297 AGEVRILVATDIAARGLDIDQ-LPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAP 355
Query: 420 TEMKML---EKLREAKI 433
E K+L E++ + KI
Sbjct: 356 DEEKLLKSIERMTKQKI 372
Score = 39 (18.8 bits), Expect = 2.7e-48, Sum P(2) = 2.7e-48
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 522 KPVLDNAEKEDKLMISREKLLPDNFTEENVD 552
KP +E + R PD F +++VD
Sbjct: 445 KPREGTPAREQRQPTPRADRAPDEFLDDDVD 475
>UNIPROTKB|F1S7D9 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
Length = 483
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 122/371 (32%), Positives = 201/371 (54%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F +L +S + G + T +Q +P L GRD LG AKTGSGKT AFV+P+L+K
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
L ++ +G + ++++PTRELA Q+ + + +GK +++GG V E
Sbjct: 64 LSEDPYG----IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSR 119
Query: 188 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG---FKKALNAIVSQLPKH 244
+ ++++ TPGRL H+ + F +++ L++DEADR+L+ G F L AI++ +P
Sbjct: 120 KPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPAR 179
Query: 245 RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK----LD 300
RQT LFSAT T ++++L L+ P + ++ T +L Q ++VP + K +
Sbjct: 180 RQTLLFSATLTDTLRELQSLATNQPFFWEA--QAPVRTVEQLDQRYLLVPEKVKDAYLVH 237
Query: 301 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFC 360
++ +F H + I++F +CK + + +K P + L+ MKQ R A A+F
Sbjct: 238 LIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFN--FPTVALHSMMKQKERFAALAKFK 295
Query: 361 EK-RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTP 419
+L TDVASRGLD V V+ + P YIHRVGRTAR G+++ +T
Sbjct: 296 SSIYRILIATDVASRGLDI-PTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQ 354
Query: 420 TEMKMLEKLRE 430
++ ++ + E
Sbjct: 355 YDIHLVHAIEE 365
>UNIPROTKB|E2RBM7 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
OMA:EVRTVEQ GeneTree:ENSGT00670000098028 CTD:54555
EMBL:AAEX03012274 RefSeq:XP_541930.1 ProteinModelPortal:E2RBM7
Ensembl:ENSCAFT00000023054 GeneID:484814 KEGG:cfa:484814
NextBio:20858886 Uniprot:E2RBM7
Length = 488
Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
Identities = 122/371 (32%), Positives = 201/371 (54%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F +L +S + G + T +Q +P L GRD LG AKTGSGKT AFV+P+L+K
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
L ++ +G + ++++PTRELA Q+ + + +GK +++GG V E
Sbjct: 64 LSEDPYG----IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSR 119
Query: 188 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG---FKKALNAIVSQLPKH 244
+ ++++ TPGRL H+ + F +++ L++DEADR+L+ G F L AI++ +P
Sbjct: 120 KPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPTR 179
Query: 245 RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK----LD 300
RQT LFSAT T ++++L L+ P + ++ T +L Q ++VP + K +
Sbjct: 180 RQTLLFSATLTDTLKELQGLATNQPFFWEA--QAPVRTVEQLDQRYLLVPEKVKDAYLVH 237
Query: 301 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFC 360
++ +F H + I++F +CK + + +K P + L+ MKQ R A A+F
Sbjct: 238 LIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFN--FPTVALHSMMKQKERFAALAKFK 295
Query: 361 EK-RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTP 419
+L TDVASRGLD V V+ + P YIHRVGRTAR G+++ +T
Sbjct: 296 SSIYRILIATDVASRGLDI-PTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQ 354
Query: 420 TEMKMLEKLRE 430
++ ++ + E
Sbjct: 355 YDIHLVHAIEE 365
>UNIPROTKB|Q9Y6V7 [details] [associations]
symbol:DDX49 "Probable ATP-dependent RNA helicase DDX49"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC002985 KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
HOVERGEN:HBG100512 EMBL:AK223294 EMBL:BC002674 IPI:IPI00003739
RefSeq:NP_061943.2 UniGene:Hs.143187 ProteinModelPortal:Q9Y6V7
SMR:Q9Y6V7 IntAct:Q9Y6V7 STRING:Q9Y6V7 PhosphoSite:Q9Y6V7
DMDM:74753527 PaxDb:Q9Y6V7 PRIDE:Q9Y6V7 DNASU:54555
Ensembl:ENST00000247003 GeneID:54555 KEGG:hsa:54555 UCSC:uc002nkq.2
CTD:54555 GeneCards:GC19P019030 HGNC:HGNC:18684 neXtProt:NX_Q9Y6V7
PharmGKB:PA134956171 InParanoid:Q9Y6V7 OrthoDB:EOG4C87SC
PhylomeDB:Q9Y6V7 GenomeRNAi:54555 NextBio:57032 ArrayExpress:Q9Y6V7
Bgee:Q9Y6V7 CleanEx:HS_DDX49 Genevestigator:Q9Y6V7
GermOnline:ENSG00000105671 Uniprot:Q9Y6V7
Length = 483
Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
Identities = 122/371 (32%), Positives = 201/371 (54%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F +L +S + G + T +Q +P L GRD LG AKTGSGKT AFV+P+L+K
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
L ++ +G + ++++PTRELA Q+ + + +GK +++GG V E
Sbjct: 64 LSEDPYG----IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSR 119
Query: 188 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG---FKKALNAIVSQLPKH 244
+ ++++ TPGRL H+ + F +++ L++DEADR+L+ G F L AI++ +P
Sbjct: 120 KPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPAR 179
Query: 245 RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK----LD 300
RQT LFSAT T ++++L L+ P + ++ +T +L Q ++VP + K +
Sbjct: 180 RQTLLFSATLTDTLRELQGLATNQPFFWEA--QAPVSTVEQLDQRYLLVPEKVKDAYLVH 237
Query: 301 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFC 360
++ F H + I++F +CK + + +K P + L+ MKQ R A A+F
Sbjct: 238 LIQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKF--SFPTVALHSMMKQKERFAALAKFK 295
Query: 361 EK-RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTP 419
+L TDVASRGLD V V+ + P YIHRVGRTAR G+++ +T
Sbjct: 296 SSIYRILIATDVASRGLDI-PTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQ 354
Query: 420 TEMKMLEKLRE 430
++ ++ + E
Sbjct: 355 YDIHLVHAIEE 365
>RGD|1311124 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1311124 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 IPI:IPI00362462 PRIDE:E9PTF0
Ensembl:ENSRNOT00000004891 UCSC:RGD:1311124 Uniprot:E9PTF0
Length = 480
Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
Identities = 123/371 (33%), Positives = 200/371 (53%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F +L +S + G + T +Q +P L GRD LG AKTGSGKT AFV+P+L+K
Sbjct: 4 FAELRLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
L ++ +G + ++++PTRELA Q+ + + +GK +++GG V E
Sbjct: 64 LSEDPYG----IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELSR 119
Query: 188 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG---FKKALNAIVSQLPKH 244
+ ++++ TPGRL H+ + F+ +++ L+LDEADR+L+ G F L I+S +P
Sbjct: 120 KPHVVIATPGRLADHLRSSNTFNMKKIRFLVLDEADRLLEQGCTDFTADLETILSAVPAR 179
Query: 245 RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK----LD 300
RQT LFSAT T ++++L L+ P + ++ T +L Q ++VP + K +
Sbjct: 180 RQTLLFSATLTDTLKELQGLATNQPFFWEA--QATVRTVEQLDQRYLLVPEKVKDAYLVH 237
Query: 301 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFC 360
++ +F + I++F +CK + + +K P + L+ MKQ R A A+F
Sbjct: 238 LVQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFN--FPTVALHSMMKQKERFAALARFK 295
Query: 361 EKR-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTP 419
+L TDVASRGLD V V+ + P YIHRVGRTAR G+++ +T
Sbjct: 296 SSTYRILIATDVASRGLDI-PTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQ 354
Query: 420 TEMKMLEKLRE 430
++ +L + E
Sbjct: 355 YDIHLLHAIEE 365
>MGI|MGI:2136689 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2136689 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 HOVERGEN:HBG100512 CTD:54555
OrthoDB:EOG4C87SC EMBL:BC099554 IPI:IPI00354271
RefSeq:NP_001020093.2 UniGene:Mm.388127 UniGene:Mm.440659
ProteinModelPortal:Q4FZF3 SMR:Q4FZF3 PhosphoSite:Q4FZF3
PRIDE:Q4FZF3 Ensembl:ENSMUST00000008004 GeneID:234374
KEGG:mmu:234374 UCSC:uc009lzu.1 InParanoid:Q4FZF3 NextBio:382139
Bgee:Q4FZF3 CleanEx:MM_DDX49 Genevestigator:Q4FZF3
GermOnline:ENSMUSG00000057788 Uniprot:Q4FZF3
Length = 480
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 121/371 (32%), Positives = 201/371 (54%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F ++ +S + G + T +Q +P L GRD LG AKTGSGKT AFV+P+L+K
Sbjct: 4 FAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
L ++ +G + ++++PTRELA Q+ + + +GK +++GG V E
Sbjct: 64 LSEDPYG----IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSR 119
Query: 188 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG---FKKALNAIVSQLPKH 244
+ ++++ TPGRL H+ + F+ ++Q L++DEADR+L+ G F L I++ +P
Sbjct: 120 KPHVVIATPGRLADHLRSSNTFNMKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVPAR 179
Query: 245 RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK----LD 300
RQT LFSAT T ++++L L+ +P + ++ T +L Q ++VP + K +
Sbjct: 180 RQTLLFSATLTDTLKELQGLATNEPFFWEA--QATVRTVEQLDQRYLLVPEKVKDAYLVH 237
Query: 301 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFC 360
++ +F + I++F +CK + + +K P + L+ MKQ R A A+F
Sbjct: 238 LVQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFN--FPTVALHSMMKQKERFAALAKFK 295
Query: 361 EK-RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTP 419
+L TDVASRGLD V V+ + P YIHRVGRTAR G+++ +T
Sbjct: 296 SSIYRILIATDVASRGLDI-PTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQ 354
Query: 420 TEMKMLEKLRE 430
++ +L + E
Sbjct: 355 YDIHLLHAIEE 365
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 127/351 (36%), Positives = 195/351 (55%)
Query: 85 GFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKE-RWGPEDGVGSII 143
GF + T IQ P +L GRD++G A+TGSGKTLA+++P L + + R G +DG +I
Sbjct: 184 GFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLI 243
Query: 144 ISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHM 203
++PTRELA Q+ + + G + + GG ++ + I++ TPGRL+ M
Sbjct: 244 LAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLID-M 302
Query: 204 DETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLAR 263
E + + ++ L+LDEADR+LD+GF+ + IVSQ+ RQT L+SAT + V+ LAR
Sbjct: 303 LECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLAR 362
Query: 264 LSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLN-SKILVFLTS-- 320
L+DP + + A + + Q IVP +K + L + +K ++ SKIL+F+ +
Sbjct: 363 QFLRDPYKAIIGSTDLKANQS-INQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVETKR 421
Query: 321 -CKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCEKRS-VLFCTDVASRGLD 377
C QV ++LR G P + ++G Q R + A+F RS ++ TDVA+RGLD
Sbjct: 422 GCDQVT------RQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLD 475
Query: 378 FNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 428
K + VV D P + YIHR+GRT R + G + F T K +L
Sbjct: 476 V-KDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFAREL 525
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
Identities = 128/367 (34%), Positives = 198/367 (53%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F +L IS+ L++ G + T IQ ++P L G+DI+G AKTG+GKTLAFV+P+LEK
Sbjct: 7 FLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEK 66
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLF-DVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV 186
+ E V ++I++PTRELA Q+ ++ K + + + + + GG+ ++
Sbjct: 67 IDPE----SSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122
Query: 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246
+I+V TPGRLL H+ D S L ++LDEAD++L GF + I+ + P +Q
Sbjct: 123 GNTHIVVATPGRLLDHI-RRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQ 181
Query: 247 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFI 306
T LFSAT K ++ LA+ + +PQ + V E VT + ++Q + K D L F+
Sbjct: 182 TMLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTV--DTIEQRVIETTDRAKPDAL-RFV 238
Query: 307 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMC--LYGRMKQDRRMAIYAQFCE-KR 363
+ V C+ + + L+ G+ C L+G + Q +R + F E K
Sbjct: 239 MDRDQPFLAVIF--CRTKVRASKLYDNLK-GLGYNCAELHGDIPQAKRERVMKSFREAKI 295
Query: 364 SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 423
L TDVA+RGLD + V V D PEDV SYIHR+GRT R G ++ F+ + K
Sbjct: 296 QYLIATDVAARGLDVD-GVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEK 354
Query: 424 MLEKLRE 430
LE++ +
Sbjct: 355 HLEEIEK 361
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
Identities = 128/367 (34%), Positives = 198/367 (53%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F +L IS+ L++ G + T IQ ++P L G+DI+G AKTG+GKTLAFV+P+LEK
Sbjct: 7 FLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEK 66
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLF-DVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV 186
+ E V ++I++PTRELA Q+ ++ K + + + + + GG+ ++
Sbjct: 67 IDPE----SSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122
Query: 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246
+I+V TPGRLL H+ D S L ++LDEAD++L GF + I+ + P +Q
Sbjct: 123 GNTHIVVATPGRLLDHI-RRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQ 181
Query: 247 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFI 306
T LFSAT K ++ LA+ + +PQ + V E VT + ++Q + K D L F+
Sbjct: 182 TMLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTV--DTIEQRVIETTDRAKPDAL-RFV 238
Query: 307 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMC--LYGRMKQDRRMAIYAQFCE-KR 363
+ V C+ + + L+ G+ C L+G + Q +R + F E K
Sbjct: 239 MDRDQPFLAVIF--CRTKVRASKLYDNLK-GLGYNCAELHGDIPQAKRERVMKSFREAKI 295
Query: 364 SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 423
L TDVA+RGLD + V V D PEDV SYIHR+GRT R G ++ F+ + K
Sbjct: 296 QYLIATDVAARGLDVD-GVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEK 354
Query: 424 MLEKLRE 430
LE++ +
Sbjct: 355 HLEEIEK 361
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 122/384 (31%), Positives = 214/384 (55%)
Query: 66 TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVL 125
T F +L +S++ ++ GF + T IQ ++P SL +D++G A+TG+GKT AF IP++
Sbjct: 2 TTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIV 61
Query: 126 EKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEH 185
EK+ + V +++++PTRELA Q+ + L +G + GG+ D++ +
Sbjct: 62 EKVNVKN----SAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQ-DIERQIRA 116
Query: 186 VNEL-NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKH 244
+ + +++V TPGR++ H++ + ++LDEAD +L++GF + + AI+S +P
Sbjct: 117 LKKHPHVIVGTPGRIIDHINRG-TLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAE 175
Query: 245 RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWS 304
RQT LFSAT ++ +A + +P+ + V + +T PN +QQ + V ++K D+L
Sbjct: 176 RQTLLFSATMPDPIRRIAERFMNEPELVKVKAKEMTV-PN-IQQYYLEVHEKKKFDILTR 233
Query: 305 FIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR- 363
+ +VF + ++V + EA LR G ++G + Q +R+++ +F E
Sbjct: 234 LLDIQAPELAIVFGRTKRRVDELAEALN-LR-GYAAEGIHGDLSQAKRLSVLRKFKEGAI 291
Query: 364 SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 423
+L TDVA+RGLD + V V D P+D SY+HR+GRT R G ++ F+TP E+
Sbjct: 292 EILVATDVAARGLDIS-GVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIG 350
Query: 424 MLEKLREAKIPIHFTKANTKRLQP 447
L + TK +R++P
Sbjct: 351 QLHHIERT------TKRKMERMKP 368
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 131/379 (34%), Positives = 211/379 (55%)
Query: 67 RFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLE 126
RF+ + + D G+ KMT IQ+ ++P G+D+L +A+TG+GKT AF +P+L+
Sbjct: 2 RFESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQ 61
Query: 127 KLYKERWGPEDGVGS----IIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDME 182
K+ + P + + S +I++PTRELA Q+ + ++A K+ NFS + GG + V+ +
Sbjct: 62 KMVEN---PSETLKSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVK-VETQ 117
Query: 183 KEHVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 241
+ + +I+V TPGRLL+H+ N S + L+LDEADR+LD+GF + I+ +
Sbjct: 118 AQKLKRGADIIVATPGRLLEHLTAC-NLSLSSVDFLVLDEADRMLDMGFSADIQKILQAV 176
Query: 242 PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ--KL 299
K RQ LFSAT + +V+ LA + PQ +S +++ TA + + Q ++ P+EQ K
Sbjct: 177 NKKRQNLLFSATFSSAVKKLANEMMIKPQVISADKQNTTA--DTVSQ--VVYPVEQRRKR 232
Query: 300 DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQ 358
++L I ++LVF T+ + K+L GIP ++G Q R +
Sbjct: 233 ELLSELIGKKNWQQVLVF-TATRDAADTL--VKELNLDGIPSEVVHGEKAQGSRRRALRE 289
Query: 359 FCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFL 417
F K VL T+VA+RGLD ++++VV D P Y+HR+GRT R G ++ F+
Sbjct: 290 FVSGKVRVLVATEVAARGLDI-PSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFV 348
Query: 418 TPTEMKML---EKLREAKI 433
+ E + L EKL KI
Sbjct: 349 SREEERTLADIEKLIGQKI 367
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 139/435 (31%), Positives = 214/435 (49%)
Query: 2 KKSKRKPNRKAVRSMEIEEIELLNSWIDSQKPE-SGTNPLSFPPLGKKEPIGRIGEDSFS 60
KK R + ++ E+ + PE + P L +K+ I G +
Sbjct: 27 KKFGNPGERLRKKKWDLNELPKFEKNFYVEHPEVARLTPYEVEELRRKKEITIRGMEGCP 86
Query: 61 KYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAF 120
K V + F Q + L D F + T IQ P +L GRD++G A+TGSGKTLA+
Sbjct: 87 KPVFA--FHQCSFPQYVMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY 144
Query: 121 VIPVLEKL----YKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGR 176
++P + + Y ER G DG ++++PTRELA Q+ V GK + + GG
Sbjct: 145 LLPAIVHINHQPYLER-G--DGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGA 201
Query: 177 RDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNA 236
++ + I + TPGRL+ + E + + L+LDEADR+LD+GF+ +
Sbjct: 202 PKGPQIRDLERGVEICIATPGRLIDFL-EAGKTNLRRCTYLVLDEADRMLDMGFEPQIRK 260
Query: 237 IVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLE 296
IV Q+ RQT ++SAT K V+ LA L+D ++V ++A N LQ + + E
Sbjct: 261 IVDQIRPDRQTLMWSATWPKEVRQLAEDFLQDYVQINVGNLELSANHNILQIVDVCMESE 320
Query: 297 Q--KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMA 354
+ KL L I A +K ++F+ + ++ + + R G P MC++G Q R
Sbjct: 321 KDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMR--RDGWPAMCIHGDKSQPERDW 378
Query: 355 IYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRS 413
+ +F K +L TDVASRGLD V +V+ D P Y+HR+GRTAR + G +
Sbjct: 379 VLNEFRSGKAPILIATDVASRGLDVED-VKFVINYDYPNSSEDYVHRIGRTARSTNKGTA 437
Query: 414 VLFLTPTEMKMLEKL 428
F TP +K +L
Sbjct: 438 YTFFTPGNLKQAREL 452
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
Identities = 123/371 (33%), Positives = 198/371 (53%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F +L ++ + G + T +Q + +P L GRD LG AKTGSGKT AFV+PVL+
Sbjct: 4 FRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQV 63
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
L ++ +G + ++++PTRELA Q+ + + +GK +++GG V E
Sbjct: 64 LSEDPYG----IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSR 119
Query: 188 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG---FKKALNAIVSQLPKH 244
+ ++++ TPGRL H+ + F +L+ L+LDEADR+L+ G F L I+ +P
Sbjct: 120 KPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVPAR 179
Query: 245 RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK----LD 300
RQT LFSAT T ++ +L L++ P + E T + L Q ++VP K +
Sbjct: 180 RQTLLFSATLTDTLNELKSLAMNRPFFWEAASE--VRTVDELDQRYLLVPEAVKDAYLVH 237
Query: 301 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFC 360
++ +F H + I++F +CK+ + + +K P + L+ MKQ +R A A+F
Sbjct: 238 LIQTFQDEHEDWSIIIFTKTCKECQILNMMLRKF--SFPSVALHSMMKQRQRFAALAKFK 295
Query: 361 EKR-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTP 419
+L TDVA+RGLD V V+ + P YIHRVGRTAR G S+ +T
Sbjct: 296 SSIFKILIATDVAARGLDI-PTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQ 354
Query: 420 TEMKMLEKLRE 430
++ ++ + E
Sbjct: 355 YDIHLVHAIEE 365
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 125/386 (32%), Positives = 217/386 (56%)
Query: 59 FSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTL 118
F Y S F+ L +S + +++ G+V+ T +QR ++P L RD++ A+TG+GKT
Sbjct: 5 FRSYFMS--FEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTA 62
Query: 119 AFVIPVLEKLYKER----WGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIG 174
F +P+L++L+ R + + ++I++PTRELA Q+F+ ++A GK+ A ++ G
Sbjct: 63 GFTLPLLQRLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHG 122
Query: 175 GRRDVDMEKEHVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKA 233
G + + H+ ++ILV TPGRLL +++ + S+++ +LDEADR+LD+GF
Sbjct: 123 GV-SIKPQINHLRRGVDILVATPGRLLDLVNQGV-LNLSRVEFFVLDEADRMLDMGFLPD 180
Query: 234 LNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIV 293
+ I+ LP+ RQ LFSAT +K +++L L P + V + A R+ V
Sbjct: 181 IRRILKLLPESRQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAA--RITHVVHPV 238
Query: 294 PLEQKLDMLWSFIKAHLN-SKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRR 352
++K ++L SF+ N ++LVF + + + + G+ ++G Q R
Sbjct: 239 DRQRKRELL-SFMIGSKNWRQVLVFTRTKHGANRLSQQLES--DGLSSAAIHGNKSQAAR 295
Query: 353 MAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGG 411
M QF + K VL TDVA+RGLD +K + V+ + P+ Y+HRVGRT R ++ G
Sbjct: 296 MRALTQFKQGKIRVLVATDVAARGLDIDK-LPHVINFELPDAAKDYVHRVGRTGRASNDG 354
Query: 412 RSVLFLTPTEMKML---EKLREAKIP 434
++ ++ E+++L EKL ++K+P
Sbjct: 355 VAISLVSGDEVRLLRDIEKLLQSKMP 380
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 125/386 (32%), Positives = 217/386 (56%)
Query: 59 FSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTL 118
F Y S F+ L +S + +++ G+V+ T +QR ++P L RD++ A+TG+GKT
Sbjct: 5 FRSYFMS--FEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTA 62
Query: 119 AFVIPVLEKLYKER----WGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIG 174
F +P+L++L+ R + + ++I++PTRELA Q+F+ ++A GK+ A ++ G
Sbjct: 63 GFTLPLLQRLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHG 122
Query: 175 GRRDVDMEKEHVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKA 233
G + + H+ ++ILV TPGRLL +++ + S+++ +LDEADR+LD+GF
Sbjct: 123 GV-SIKPQINHLRRGVDILVATPGRLLDLVNQGV-LNLSRVEFFVLDEADRMLDMGFLPD 180
Query: 234 LNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIV 293
+ I+ LP+ RQ LFSAT +K +++L L P + V + A R+ V
Sbjct: 181 IRRILKLLPESRQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAA--RITHVVHPV 238
Query: 294 PLEQKLDMLWSFIKAHLN-SKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRR 352
++K ++L SF+ N ++LVF + + + + G+ ++G Q R
Sbjct: 239 DRQRKRELL-SFMIGSKNWRQVLVFTRTKHGANRLSQQLES--DGLSSAAIHGNKSQAAR 295
Query: 353 MAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGG 411
M QF + K VL TDVA+RGLD +K + V+ + P+ Y+HRVGRT R ++ G
Sbjct: 296 MRALTQFKQGKIRVLVATDVAARGLDIDK-LPHVINFELPDAAKDYVHRVGRTGRASNDG 354
Query: 412 RSVLFLTPTEMKML---EKLREAKIP 434
++ ++ E+++L EKL ++K+P
Sbjct: 355 VAISLVSGDEVRLLRDIEKLLQSKMP 380
>TIGR_CMR|GSU_0522 [details] [associations]
symbol:GSU_0522 "ATP-dependent RNA helicase RhlB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732
RefSeq:NP_951580.1 ProteinModelPortal:Q74FT4 GeneID:2685920
KEGG:gsu:GSU0522 PATRIC:22023799 OMA:LAYEFMN ProtClustDB:CLSK827899
BioCyc:GSUL243231:GH27-482-MONOMER Uniprot:Q74FT4
Length = 443
Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 121/381 (31%), Positives = 208/381 (54%)
Query: 67 RFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLE 126
+F L + ++ G+ DAGF T IQ +LP SL G+D+ G A+TG+GKT AF+I +
Sbjct: 2 KFADLNLPEQVMQGVADAGFSDCTPIQEKTLPLSLGGKDVAGQAQTGTGKTAAFLISLFT 61
Query: 127 KLYKE-RWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEH 185
KL + R G +II++PTREL Q+ + +G H F+ + GG D +K
Sbjct: 62 KLLRSGRGGERRHPRAIILAPTRELVVQIEKDAQVLGAHCGFTIQAIYGGV-DYMKQKNA 120
Query: 186 VNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKH 244
+ E +++V TPGRL+ ++ + + ++++L++DEADR+ D+GF L I+ +LP +
Sbjct: 121 LKEGADVVVGTPGRLIDYLKQKV-YSLKEIEMLVIDEADRMFDMGFIADLRFILRRLPPY 179
Query: 245 --RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDML 302
RQ +FSAT + V +LA + P+ ++V E +TA R++Q V ++K +L
Sbjct: 180 DKRQNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQMTA--ERVEQVLYHVGRKEKFPLL 237
Query: 303 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE- 361
++ + ++F+ + ++ +++ E P + G ++Q +R+ I F
Sbjct: 238 LGLLRKEGMERTMIFVNTKREAEFLDERLNA--NDFPCRVISGDVEQRKRLKILEDFKSG 295
Query: 362 KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 421
K ++ TDVASRGL + V V+ D P+D Y+HR+GRTAR + G+++
Sbjct: 296 KLPIMIATDVASRGLHID-GVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISMADEDG 354
Query: 422 MKMLEKLREA---KIPIHFTK 439
LE + E KIP+ + +
Sbjct: 355 AFHLEAIHEYIKDKIPVEWAE 375
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
Identities = 139/436 (31%), Positives = 216/436 (49%)
Query: 2 KKSKRKPNRKAVRSMEIEEIELLNSWIDSQKPE-SGTNPLSFPPLGKKEPIGRIGEDSFS 60
KK R + ++ E+ + PE + P L +K+ I G D
Sbjct: 29 KKFGNPGERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCP 88
Query: 61 KYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAF 120
K V + P + L D F + T IQ P +L GRD++G A+TGSGKTLA+
Sbjct: 89 KPVFAFHHANFP--QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY 146
Query: 121 VIPVLEKL----YKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGR 176
++P + + Y ER G DG ++++PTRELA Q+ V GK + + GG
Sbjct: 147 LLPAIVHINHQPYLER-G--DGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGA 203
Query: 177 RDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNA 236
++ + I + TPGRL+ + E+ + + L+LDEADR+LD+GF+ +
Sbjct: 204 PKGPQIRDLERGVEICIATPGRLIDFL-ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRK 262
Query: 237 IVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLE 296
IV Q+ RQT ++SAT K V+ LA L+D ++V ++A N LQ + + E
Sbjct: 263 IVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESE 322
Query: 297 Q--KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMA 354
+ KL L I A +K ++F+ + ++ + + R G P MC++G Q R
Sbjct: 323 KDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMR--RDGWPAMCIHGDKSQPERDW 380
Query: 355 IYAQFCE-KRSVLFCTDVASRGLDFN-KAVDWVVQVDCPEDVASYIHRVGRTARYNSGGR 412
+ +F K +L TDVASRGL F+ + V +V+ D P Y+HR+GRTAR + G
Sbjct: 381 VLNEFRSGKAPILIATDVASRGLGFDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGT 440
Query: 413 SVLFLTPTEMKMLEKL 428
+ F TP +K +L
Sbjct: 441 AYTFFTPGNLKQAREL 456
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
Identities = 139/435 (31%), Positives = 214/435 (49%)
Query: 2 KKSKRKPNRKAVRSMEIEEIELLNSWIDSQKPE-SGTNPLSFPPLGKKEPIGRIGEDSFS 60
KK R + ++ E+ + PE + P L +K+ I G D
Sbjct: 29 KKFGNPGERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCP 88
Query: 61 KYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAF 120
K V + P + L D F + T IQ P +L GRD++G A+TGSGKTLA+
Sbjct: 89 KPVFAFHHANFP--QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY 146
Query: 121 VIPVLEKL----YKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGR 176
++P + + Y ER G DG ++++PTRELA Q+ V GK + + GG
Sbjct: 147 LLPAIVHINHQPYLER-G--DGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGA 203
Query: 177 RDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNA 236
++ + I + TPGRL+ + E+ + + L+LDEADR+LD+GF+ +
Sbjct: 204 PKGPQIRDLERGVEICIATPGRLIDFL-ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRK 262
Query: 237 IVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLE 296
IV Q+ RQT ++SAT K V+ LA L+D ++V ++A N LQ + + E
Sbjct: 263 IVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESE 322
Query: 297 Q--KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMA 354
+ KL L I A +K ++F+ + ++ + + R G P MC++G Q R
Sbjct: 323 KDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMR--RDGWPAMCIHGDKSQPERDW 380
Query: 355 IYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRS 413
+ +F K +L TDVASRGLD V +V+ D P Y+HR+GRTAR + G +
Sbjct: 381 VLNEFRSGKAPILIATDVASRGLDVED-VKFVINYDYPNSSEDYVHRIGRTARSTNKGTA 439
Query: 414 VLFLTPTEMKMLEKL 428
F TP +K +L
Sbjct: 440 YTFFTPGNLKQAREL 454
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
Identities = 139/435 (31%), Positives = 214/435 (49%)
Query: 2 KKSKRKPNRKAVRSMEIEEIELLNSWIDSQKPE-SGTNPLSFPPLGKKEPIGRIGEDSFS 60
KK R + ++ E+ + PE + P L +K+ I G D
Sbjct: 29 KKFGNPGERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCP 88
Query: 61 KYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAF 120
K V + P + L D F + T IQ P +L GRD++G A+TGSGKTLA+
Sbjct: 89 KPVFAFHHANFP--QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY 146
Query: 121 VIPVLEKL----YKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGR 176
++P + + Y ER G DG ++++PTRELA Q+ V GK + + GG
Sbjct: 147 LLPAIVHINHQPYLER-G--DGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGA 203
Query: 177 RDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNA 236
++ + I + TPGRL+ + E+ + + L+LDEADR+LD+GF+ +
Sbjct: 204 PKGPQIRDLERGVEICIATPGRLIDFL-ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRK 262
Query: 237 IVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLE 296
IV Q+ RQT ++SAT K V+ LA L+D ++V ++A N LQ + + E
Sbjct: 263 IVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESE 322
Query: 297 Q--KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMA 354
+ KL L I A +K ++F+ + ++ + + R G P MC++G Q R
Sbjct: 323 KDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMR--RDGWPAMCIHGDKSQPERDW 380
Query: 355 IYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRS 413
+ +F K +L TDVASRGLD V +V+ D P Y+HR+GRTAR + G +
Sbjct: 381 VLNEFRSGKAPILIATDVASRGLDVED-VKFVINYDYPNSSEDYVHRIGRTARSTNKGTA 439
Query: 414 VLFLTPTEMKMLEKL 428
F TP +K +L
Sbjct: 440 YTFFTPGNLKQAREL 454
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
Identities = 139/435 (31%), Positives = 214/435 (49%)
Query: 2 KKSKRKPNRKAVRSMEIEEIELLNSWIDSQKPE-SGTNPLSFPPLGKKEPIGRIGEDSFS 60
KK R + ++ E+ + PE + P L +K+ I G D
Sbjct: 29 KKFGNPGERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCP 88
Query: 61 KYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAF 120
K V + P + L D F + T IQ P +L GRD++G A+TGSGKTLA+
Sbjct: 89 KPVFAFHHANFP--QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY 146
Query: 121 VIPVLEKL----YKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGR 176
++P + + Y ER G DG ++++PTRELA Q+ V GK + + GG
Sbjct: 147 LLPAIVHINHQPYLER-G--DGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGA 203
Query: 177 RDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNA 236
++ + I + TPGRL+ + E+ + + L+LDEADR+LD+GF+ +
Sbjct: 204 PKGPQIRDLERGVEICIATPGRLIDFL-ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRK 262
Query: 237 IVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLE 296
IV Q+ RQT ++SAT K V+ LA L+D ++V ++A N LQ + + E
Sbjct: 263 IVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESE 322
Query: 297 Q--KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMA 354
+ KL L I A +K ++F+ + ++ + + R G P MC++G Q R
Sbjct: 323 KDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMR--RDGWPAMCIHGDKSQPERDW 380
Query: 355 IYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRS 413
+ +F K +L TDVASRGLD V +V+ D P Y+HR+GRTAR + G +
Sbjct: 381 VLNEFRSGKAPILIATDVASRGLDVED-VKFVINYDYPNSSEDYVHRIGRTARSTNKGTA 439
Query: 414 VLFLTPTEMKMLEKL 428
F TP +K +L
Sbjct: 440 YTFFTPGNLKQAREL 454
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 471 (170.9 bits), Expect = 1.0e-46, Sum P(2) = 1.0e-46
Identities = 124/383 (32%), Positives = 202/383 (52%)
Query: 67 RFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLE 126
+F + S ++ GF + T IQ+ ++P ++ G D++ ++KTGSGKTLAF+IP L+
Sbjct: 2 QFSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQ 61
Query: 127 KLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV 186
+L K R + +I++PTRELA Q+F L+ + + A L++GG D K
Sbjct: 62 RLSKNRALSKRDPRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQ 121
Query: 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHR- 245
E +V TPGRL H+ + +F + L++LILDEADR+LD+GF K L I ++ HR
Sbjct: 122 KEPEFIVATPGRLADHLTQG-HFHLNGLELLILDEADRMLDLGFSKELTQI-NKAADHRK 179
Query: 246 -QTFLFSATQTKS-VQDLARLSLKDPQYLSV---HEESVTATPNRLQQTAMIVPLEQKLD 300
QT LFSAT + V + A L P+ +++ H E V ++ + L QK
Sbjct: 180 RQTLLFSATLDHAQVNEFATELLTKPKRIAINAGHSEHVDIA----KRFYLADNLTQKEA 235
Query: 301 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFC 360
+L F+ + +I++F + + + + + + L G + Q +R I F
Sbjct: 236 LLQHFLVTEKSQQIIIFTATRSDTDRLAKLLTE--QNLNAVALSGELNQGQRNQIMESFS 293
Query: 361 E-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTP 419
+ + +L TD+ASRGLD V V+ D P+ ++HR+GRT R + G ++ + P
Sbjct: 294 KGQHKILVTTDLASRGLDLIN-VSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGP 352
Query: 420 TE---MKMLEKLREAKIPIHFTK 439
+ +K +E + KI FTK
Sbjct: 353 NDWLSLKNVEAFLQQKIS--FTK 373
Score = 39 (18.8 bits), Expect = 1.0e-46, Sum P(2) = 1.0e-46
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 515 KGKMVPVKPVLDNAEKEDKLMISREKLLPDNFTE 548
K + V K LD + +I R+KL PD +
Sbjct: 408 KPRKVIKKTFLDIEDAGAMKIIKRKKLTPDQIED 441
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 471 (170.9 bits), Expect = 1.0e-46, Sum P(2) = 1.0e-46
Identities = 124/383 (32%), Positives = 202/383 (52%)
Query: 67 RFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLE 126
+F + S ++ GF + T IQ+ ++P ++ G D++ ++KTGSGKTLAF+IP L+
Sbjct: 2 QFSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQ 61
Query: 127 KLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV 186
+L K R + +I++PTRELA Q+F L+ + + A L++GG D K
Sbjct: 62 RLSKNRALSKRDPRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQ 121
Query: 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHR- 245
E +V TPGRL H+ + +F + L++LILDEADR+LD+GF K L I ++ HR
Sbjct: 122 KEPEFIVATPGRLADHLTQG-HFHLNGLELLILDEADRMLDLGFSKELTQI-NKAADHRK 179
Query: 246 -QTFLFSATQTKS-VQDLARLSLKDPQYLSV---HEESVTATPNRLQQTAMIVPLEQKLD 300
QT LFSAT + V + A L P+ +++ H E V ++ + L QK
Sbjct: 180 RQTLLFSATLDHAQVNEFATELLTKPKRIAINAGHSEHVDIA----KRFYLADNLTQKEA 235
Query: 301 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFC 360
+L F+ + +I++F + + + + + + L G + Q +R I F
Sbjct: 236 LLQHFLVTEKSQQIIIFTATRSDTDRLAKLLTE--QNLNAVALSGELNQGQRNQIMESFS 293
Query: 361 E-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTP 419
+ + +L TD+ASRGLD V V+ D P+ ++HR+GRT R + G ++ + P
Sbjct: 294 KGQHKILVTTDLASRGLDLIN-VSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGP 352
Query: 420 TE---MKMLEKLREAKIPIHFTK 439
+ +K +E + KI FTK
Sbjct: 353 NDWLSLKNVEAFLQQKIS--FTK 373
Score = 39 (18.8 bits), Expect = 1.0e-46, Sum P(2) = 1.0e-46
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 515 KGKMVPVKPVLDNAEKEDKLMISREKLLPDNFTE 548
K + V K LD + +I R+KL PD +
Sbjct: 408 KPRKVIKKTFLDIEDAGAMKIIKRKKLTPDQIED 441
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
Identities = 127/409 (31%), Positives = 225/409 (55%)
Query: 66 TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVL 125
T+F L +S+ ++D G+ + IQ ++P + GRD++ AA+TG+GKT F +P+L
Sbjct: 6 TKFTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLL 65
Query: 126 EKLYKERWGP--EDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEK 183
++L + + V ++I++PTRELA Q+ + ++ GK+ N + ++ GG + ++ +
Sbjct: 66 QRLSSSKGNKVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVK-INPQI 124
Query: 184 EHVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP 242
+ + +++LV TPGRLL ++ SQL++ ILDEADR+LD+GF + + +++ LP
Sbjct: 125 ARLRQGVDVLVATPGRLLDLYNQRA-VKFSQLEVFILDEADRMLDMGFIRDIKKLMTALP 183
Query: 243 KHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDML 302
K RQ LFSAT + ++ LA+ + +P +SV E+ TA ++ Q V ++K +L
Sbjct: 184 KDRQNLLFSATFSPEIRALAKGMVNNPLEISVDAENSTA--EKVTQWLTAVDKKRKPAVL 241
Query: 303 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRP-GIPLMCLYGRMKQDRRMAIYAQFCE 361
IK + ++LVF T K + K L G+ ++G Q R A F +
Sbjct: 242 THLIKENNWQQVLVF-TKTKHGAN--KLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKD 298
Query: 362 KR-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 420
+L TD+A+RG+D + + VV D P Y+HR+GRTAR + G+++ +
Sbjct: 299 GSVKILVATDIAARGIDID-LLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCAD 357
Query: 421 EMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKA 469
E+ +L + E I H + ++ P + L + ++K P Q + K+
Sbjct: 358 ELDLLWGI-EHVIQQHIERKVIEKFIPANELGESRVIK-PLKQGKPPKS 404
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 484 (175.4 bits), Expect = 3.9e-46, P = 3.9e-46
Identities = 120/365 (32%), Positives = 197/365 (53%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F +S + GF + T IQ ++P L +D++G A+TG+GKT AF IP++EK
Sbjct: 5 FQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEK 64
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
+ E P + +I+I+PTRELA Q+ + L +G+ + GG+ D+ + +
Sbjct: 65 INPE--SPN--IQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQ-DIGRQIRALK 119
Query: 188 EL-NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246
+ NI+V TPGRLL H++ + + +++DEAD +L++GF + +I+S +P Q
Sbjct: 120 KNPNIIVGTPGRLLDHINRR-TIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQ 178
Query: 247 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFI 306
T LFSAT ++ +A + +P+++ V + +T + +QQ + V +K D L +
Sbjct: 179 TLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVS--NIQQFYLEVQERKKFDTLTRLL 236
Query: 307 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SV 365
+VF + ++V + EA LR G ++G + Q +RM +F E V
Sbjct: 237 DIQSPELAIVFGRTKRRVDELAEALN-LR-GYAAEGIHGDLTQAKRMVALRKFKEGAIEV 294
Query: 366 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 425
L TDVA+RGLD + V V D P+D SY+HR+GRT R G ++ F+TP E ML
Sbjct: 295 LVATDVAARGLDIS-GVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSML 353
Query: 426 EKLRE 430
+ +
Sbjct: 354 RAIEQ 358
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 483 (175.1 bits), Expect = 5.2e-46, P = 5.2e-46
Identities = 132/378 (34%), Positives = 205/378 (54%)
Query: 66 TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVL 125
T F +L + + L+D GF + T IQ A++P +L GRD+LG+A TG+GKT A+++P L
Sbjct: 4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63
Query: 126 EKLY---KERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDME 182
+ L +++ GP +I++PTRELA Q+ D + + KH + + GG ++
Sbjct: 64 QHLLDFPRKKSGPPR---ILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120
Query: 183 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP 242
+ +I+V T GRLLQ++ E NFDC ++ LILDEADR+LD+GF + + I +
Sbjct: 121 EVFSENQDIVVATTGRLLQYIKEE-NFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179
Query: 243 KHRQTFLFSAT-QTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP-LEQKLD 300
+QT LFSAT + ++QD A L+DP +S + T ++ Q LE K
Sbjct: 180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPS--TRERKKIHQWYYRADDLEHKTA 237
Query: 301 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRP-GIPLMCLYGRMKQDRRMAIYAQF 359
+L +K ++ +VF+ ++ + V E LR GI L G M Q +R +
Sbjct: 238 LLVHLLKQPEATRSIVFV---RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRL 294
Query: 360 CEKR-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 418
E R +VL TDVA+RG+D V V D P +Y+HR+GRTAR G ++ +
Sbjct: 295 TEGRVNVLVATDVAARGIDIPD-VSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVE 353
Query: 419 PTEMKMLEKL-REAKIPI 435
+ +L K+ R + PI
Sbjct: 354 AHDHLLLGKVGRYIEEPI 371
>TIGR_CMR|VC_2564 [details] [associations]
symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
Uniprot:Q9KP15
Length = 460
Score = 483 (175.1 bits), Expect = 5.2e-46, P = 5.2e-46
Identities = 126/370 (34%), Positives = 199/370 (53%)
Query: 63 VGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVI 122
+ + F L + + + L+ GF MT IQ SLP L G+D++G KTGSGKT AF +
Sbjct: 1 MNANSFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGL 60
Query: 123 PVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKH-HNFSAGLLIGGRRDVDM 181
VL L +R+ V ++++ PTRELADQ+ ++ +G+ HN L GG
Sbjct: 61 GVLSNLNVKRFR----VQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQ 116
Query: 182 EKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 241
+ +ILV TPGR+L H+ + D S+L L+LDEADR+L++GF++AL AI++
Sbjct: 117 IGSLEHGAHILVGTPGRILDHLSKD-RIDLSELNTLVLDEADRMLEMGFQEALEAIIAAA 175
Query: 242 PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDM 301
P RQT LFSAT S++ +A+ ++ + V E+ T + Q + + +
Sbjct: 176 PAERQTLLFSATYPASIEQIAQSVTRNALMIKV--EATHDTSSIRQYFYKVEGSAARDEA 233
Query: 302 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 361
L + + H + +VF + ++V+ V +A + G ++ L+G M+Q R QF
Sbjct: 234 LETLLLHHQPTSSVVFCNTKREVQNVADALHQ--SGFSVIELHGDMEQRERDQALVQFAN 291
Query: 362 KR-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 420
K S+L TDVA+RGLD + +D V D D ++HR+GRT R S G + F +
Sbjct: 292 KSISILVATDVAARGLDVDN-LDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDN 350
Query: 421 EMKMLEKLRE 430
E + ++ E
Sbjct: 351 ESYRVAQIDE 360
>UNIPROTKB|F1S0U0 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:CU326339
Ensembl:ENSSSCT00000006300 Uniprot:F1S0U0
Length = 784
Score = 331 (121.6 bits), Expect = 7.3e-46, Sum P(3) = 7.3e-46
Identities = 86/199 (43%), Positives = 126/199 (63%)
Query: 89 MTDIQRASLPHSLCGRDILGAAKTGS-GKTLAFVIPVLEKLY--KERWGPEDGVGSIIIS 145
+T IQ+ S+P L GRD L ++TGS GKTLA+ IP+++ L K + DG ++I+
Sbjct: 210 LTSIQKQSIPVLLEGRDALVRSQTGSEGKTLAYCIPMVQSLQAVKPKIQRGDGPYALILV 269
Query: 146 PTRELADQLFDVLKAVGKHHNFSA-GLLIGGRRDVDMEKEHVNE-LNILVCTPGRLLQHM 203
PTRELA Q FD ++ + K + G+L+GG + EK + + +NIL+ TPGRL+ H+
Sbjct: 270 PTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKS-EKARLRKGINILISTPGRLVDHI 328
Query: 204 DETPNFDCSQLQILILDEADRILDVGFKK----ALNAIVSQLPKHRQTFLFSATQTKSVQ 259
T N +++ LILDEADR+LD+GF+K LNA+ ++ P+ RQ L SAT T+ V
Sbjct: 329 KSTKNMRFCRIRWLILDEADRLLDLGFEKDIALILNAVNAERPE-RQNVLLSATLTEGVT 387
Query: 260 DLARLSLKDPQYLSVHEES 278
LA +SL +P +SV E S
Sbjct: 388 RLADISLHEPVRISVLEGS 406
Score = 226 (84.6 bits), Expect = 7.3e-46, Sum P(3) = 7.3e-46
Identities = 60/177 (33%), Positives = 93/177 (52%)
Query: 276 EESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKK-- 333
E+ V P++L+ ++ + QK K + K++VF +SC+ V++ F +
Sbjct: 439 EQHVALVPSKLRLVSLAAFILQKC-------KFEPDQKMIVFFSSCELVEFHHSLFLQTL 491
Query: 334 ------LRPG-IP-------LMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDF 378
L PG +P + L+G M+Q+ R A++ +F K VL CTDVA+RGLD
Sbjct: 492 LGGSGALAPGRLPSASPPLTFLRLHGDMEQEERTAVFQEFSRSKAGVLLCTDVAARGLDL 551
Query: 379 NKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKIPI 435
+ V W+VQ P A Y+HR+GRTAR G S+L L P+E + + L KI +
Sbjct: 552 PQ-VTWIVQYTAPSSPAEYVHRIGRTARIGFQGSSLLILAPSEAEYVNSLASHKIKV 607
Score = 63 (27.2 bits), Expect = 6.4e-29, Sum P(3) = 6.4e-29
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 281 ATPNRLQQTAMIVPLEQKLDMLWSFI----KAHLNSKILVFLTSCKQVKYVFEAF 331
A P L+Q +VP + +L L +FI K + K++VF +SC+ V++ F
Sbjct: 433 AIPVGLEQHVALVPSKLRLVSLAAFILQKCKFEPDQKMIVFFSSCELVEFHHSLF 487
Score = 48 (22.0 bits), Expect = 7.3e-46, Sum P(3) = 7.3e-46
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 466 AQKAFITYLRS--VHIQKDKEVFDVTKLSIDEFSASLGLPMTPK 507
A+KA +++R+ + ++ K +F V L + + S GL PK
Sbjct: 668 AKKALQSFVRAYATYPRELKHIFHVRSLHLGHVAKSFGLRDAPK 711
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 480 (174.0 bits), Expect = 1.2e-45, P = 1.2e-45
Identities = 120/365 (32%), Positives = 198/365 (54%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F +S +K GF + T IQ ++P L +D++G A+TG+GKT AF IP++EK
Sbjct: 5 FQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEK 64
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
+ E P + +I+I+PTRELA Q+ + L +G+ + GG+ D+ + +
Sbjct: 65 INPE--SPN--IQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQ-DIGRQIRALK 119
Query: 188 EL-NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246
+ +I+V TPGRLL H++ + ++LDEAD +L++GF + + +I+S +P Q
Sbjct: 120 KNPHIIVGTPGRLLDHINRR-TMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQ 178
Query: 247 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFI 306
T LFSAT ++ +A + +P+++ V + +T + +QQ + V +K D L +
Sbjct: 179 TLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVS--NIQQFYLEVHERKKFDTLTRLL 236
Query: 307 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SV 365
+VF + ++V + EA LR G ++G + Q +RM +F + V
Sbjct: 237 DIQSPELAIVFGRTKRRVDELTEALN-LR-GYTAEGIHGDLTQAKRMVALRKFKQGAIEV 294
Query: 366 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 425
L TDVA+RGLD + V V D P+D SY+HR+GRT R G ++ F+TP E ML
Sbjct: 295 LVATDVAARGLDIS-GVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDML 353
Query: 426 EKLRE 430
+ +
Sbjct: 354 RAIEQ 358
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 477 (173.0 bits), Expect = 2.8e-45, P = 2.8e-45
Identities = 126/385 (32%), Positives = 203/385 (52%)
Query: 65 STRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPV 124
S F QL + + + L + G T IQ+ ++PH L G+D+L A+TG+GKT AF +P+
Sbjct: 5 SITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPL 64
Query: 125 LEKLYKERWGPEDG---VGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDM 181
+++ ++ W E + ++++ PTRELA Q+ D L+A K + GG + +
Sbjct: 65 IQRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGT-SMKV 123
Query: 182 EKEHVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ 240
+ H+ ++IL+ TPGRLL H F ++++L+LDEADR+LD+GF L ++ +
Sbjct: 124 QLNHLRGGVDILIATPGRLLDHAHVKSLF-LGKVEVLVLDEADRMLDMGFMPDLQRVLRR 182
Query: 241 LPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLD 300
L RQT FSAT ++ +A ++DP + V + TA +QQ M+ P+++K
Sbjct: 183 LSPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTA--ETVQQ--MVYPVDKKRK 238
Query: 301 M-LWSFIKAHLN-SKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQ 358
L S++ N ++LVF T +Q KL GI + + G Q R
Sbjct: 239 RELLSYLIGSKNWQQVLVF-TKTRQGSDALAEELKL-DGIKAVSINGDKSQGARQKALDD 296
Query: 359 F-CEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFL 417
F K L TDVA+RGLD + ++ VV D P Y+HR+GRT R G +V L
Sbjct: 297 FKAGKVRALIATDVAARGLDIAQ-LEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLL 355
Query: 418 TPTE---MKMLEKLREAKIPIHFTK 439
+ E ++ +E+L ++P + K
Sbjct: 356 SHDEQPQLEAIERLLNTRLPQEWLK 380
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 477 (173.0 bits), Expect = 2.8e-45, P = 2.8e-45
Identities = 126/385 (32%), Positives = 203/385 (52%)
Query: 65 STRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPV 124
S F QL + + + L + G T IQ+ ++PH L G+D+L A+TG+GKT AF +P+
Sbjct: 5 SITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPL 64
Query: 125 LEKLYKERWGPEDG---VGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDM 181
+++ ++ W E + ++++ PTRELA Q+ D L+A K + GG + +
Sbjct: 65 IQRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGT-SMKV 123
Query: 182 EKEHVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ 240
+ H+ ++IL+ TPGRLL H F ++++L+LDEADR+LD+GF L ++ +
Sbjct: 124 QLNHLRGGVDILIATPGRLLDHAHVKSLF-LGKVEVLVLDEADRMLDMGFMPDLQRVLRR 182
Query: 241 LPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLD 300
L RQT FSAT ++ +A ++DP + V + TA +QQ M+ P+++K
Sbjct: 183 LSPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTA--ETVQQ--MVYPVDKKRK 238
Query: 301 M-LWSFIKAHLN-SKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQ 358
L S++ N ++LVF T +Q KL GI + + G Q R
Sbjct: 239 RELLSYLIGSKNWQQVLVF-TKTRQGSDALAEELKL-DGIKAVSINGDKSQGARQKALDD 296
Query: 359 F-CEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFL 417
F K L TDVA+RGLD + ++ VV D P Y+HR+GRT R G +V L
Sbjct: 297 FKAGKVRALIATDVAARGLDIAQ-LEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLL 355
Query: 418 TPTE---MKMLEKLREAKIPIHFTK 439
+ E ++ +E+L ++P + K
Sbjct: 356 SHDEQPQLEAIERLLNTRLPQEWLK 380
>UNIPROTKB|H7C452 [details] [associations]
symbol:DDX18 "ATP-dependent RNA helicase DDX18"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0008026 HGNC:HGNC:2741 ChiTaRS:DDX18
EMBL:AC009312 EMBL:AC009404 ProteinModelPortal:H7C452 PRIDE:H7C452
Ensembl:ENST00000415038 Bgee:H7C452 Uniprot:H7C452
Length = 214
Score = 285 (105.4 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
Identities = 56/125 (44%), Positives = 82/125 (65%)
Query: 313 KILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS-VLFCTDV 371
K++VF +SC VKY +E + +P++ ++G+ KQ++R + QFC S L CTDV
Sbjct: 91 KLMVFFSSCMSVKYHYELLNYI--DLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDV 148
Query: 372 ASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR-YNSGGRSVLFLTPTEMKMLEKLRE 430
A+RGLD + VDW+VQ D P+D YIHRVGRTAR N G ++L L P E+ L L++
Sbjct: 149 AARGLDIPE-VDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEELGFLRYLKQ 207
Query: 431 AKIPI 435
+K+P+
Sbjct: 208 SKVPL 212
Score = 225 (84.3 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
Identities = 46/84 (54%), Positives = 60/84 (71%)
Query: 206 TPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLS 265
TP F LQ L++DEADRILDVGF++ L I+ LP RQT LFSATQT+ V+DLAR+S
Sbjct: 2 TPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARIS 61
Query: 266 LK-DPQYLSVHEESVTATPNRLQQ 288
LK +P Y+ V ++ AT + L+Q
Sbjct: 62 LKKEPLYVGVDDDKANATVDGLEQ 85
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 490 (177.5 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 139/435 (31%), Positives = 214/435 (49%)
Query: 2 KKSKRKPNRKAVRSMEIEEIELLNSWIDSQKPE-SGTNPLSFPPLGKKEPIGRIGEDSFS 60
KK R + ++ E+ + PE + P L +K+ I G D
Sbjct: 108 KKFGNPGERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCP 167
Query: 61 KYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAF 120
K V + P + L D F + T IQ P +L GRD++G A+TGSGKTLA+
Sbjct: 168 KPVFAFHHANFP--QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY 225
Query: 121 VIPVLEKL----YKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGR 176
++P + + Y ER G DG ++++PTRELA Q+ V GK + + GG
Sbjct: 226 LLPAIVHINHQPYLER-G--DGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGA 282
Query: 177 RDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNA 236
++ + I + TPGRL+ + E+ + + L+LDEADR+LD+GF+ +
Sbjct: 283 PKGPQIRDLERGVEICIATPGRLIDFL-ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRK 341
Query: 237 IVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLE 296
IV Q+ RQT ++SAT K V+ LA L+D ++V ++A N LQ + + E
Sbjct: 342 IVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESE 401
Query: 297 Q--KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMA 354
+ KL L I A +K ++F+ + ++ + + R G P MC++G Q R
Sbjct: 402 KDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMR--RDGWPAMCIHGDKSQPERDW 459
Query: 355 IYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRS 413
+ +F K +L TDVASRGLD V +V+ D P Y+HR+GRTAR + G +
Sbjct: 460 VLNEFRSGKAPILIATDVASRGLDVED-VKFVINYDYPNSSEDYVHRIGRTARSTNKGTA 518
Query: 414 VLFLTPTEMKMLEKL 428
F TP +K +L
Sbjct: 519 YTFFTPGNLKQAREL 533
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 490 (177.5 bits), Expect = 4.5e-45, P = 4.5e-45
Identities = 139/435 (31%), Positives = 214/435 (49%)
Query: 2 KKSKRKPNRKAVRSMEIEEIELLNSWIDSQKPE-SGTNPLSFPPLGKKEPIGRIGEDSFS 60
KK R + ++ E+ + PE + P L +K+ I G D
Sbjct: 108 KKFGNPGERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCP 167
Query: 61 KYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAF 120
K V + P + L D F + T IQ P +L GRD++G A+TGSGKTLA+
Sbjct: 168 KPVFAFHHANFP--QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY 225
Query: 121 VIPVLEKL----YKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGR 176
++P + + Y ER G DG ++++PTRELA Q+ V GK + + GG
Sbjct: 226 LLPAIVHINHQPYLER-G--DGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGA 282
Query: 177 RDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNA 236
++ + I + TPGRL+ + E+ + + L+LDEADR+LD+GF+ +
Sbjct: 283 PKGPQIRDLERGVEICIATPGRLIDFL-ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRK 341
Query: 237 IVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLE 296
IV Q+ RQT ++SAT K V+ LA L+D ++V ++A N LQ + + E
Sbjct: 342 IVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESE 401
Query: 297 Q--KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMA 354
+ KL L I A +K ++F+ + ++ + + R G P MC++G Q R
Sbjct: 402 KDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMR--RDGWPAMCIHGDKSQPERDW 459
Query: 355 IYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRS 413
+ +F K +L TDVASRGLD V +V+ D P Y+HR+GRTAR + G +
Sbjct: 460 VLNEFRSGKAPILIATDVASRGLDVED-VKFVINYDYPNSSEDYVHRIGRTARSTNKGTA 518
Query: 414 VLFLTPTEMKMLEKL 428
F TP +K +L
Sbjct: 519 YTFFTPGNLKQAREL 533
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 475 (172.3 bits), Expect = 4.8e-45, P = 4.8e-45
Identities = 123/366 (33%), Positives = 202/366 (55%)
Query: 81 LKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKE---RWGPED 137
LK+ V T IQ P +L G+D++G A+TGSGKTLAF++P + + ++G D
Sbjct: 128 LKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQPNLKYG--D 185
Query: 138 GVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPG 197
G ++++PTRELA+Q+ GG ++IL+ PG
Sbjct: 186 GPIVLVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQGVHILIACPG 245
Query: 198 RLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKS 257
RL+ +++ + ++ L+LDEAD++LD+GF+ + IV Q+ RQT ++SAT K
Sbjct: 246 RLIDLLEQNVT-NLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRPDRQTLMWSATWPKE 304
Query: 258 VQDLARLSLKDPQYLSVHEESVTATPNR-LQQTAMIVPLEQKLDMLWSFIKAHL--NSKI 314
VQ LA+ K+ Q + V+ S+T T R ++Q ++ +K+ L S ++ N +I
Sbjct: 305 VQALAKDLCKE-QPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKSLLQRIFKDNDRI 363
Query: 315 LVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS-VLFCTDVAS 373
+VF+ + K ++ +A + G+P +C++G KQ+ R + +F +S ++ TDVAS
Sbjct: 364 IVFVETKKNADFITKALRL--DGMPALCIHGDKKQEERRWVLNEFKTGKSPIMIATDVAS 421
Query: 374 RGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM---LEK-LR 429
RGLD K V +V+ D P + Y+HR+GRT R S G S FLT + ++ L K LR
Sbjct: 422 RGLDI-KNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAKDLVKILR 480
Query: 430 EAKIPI 435
E++ P+
Sbjct: 481 ESEQPV 486
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 475 (172.3 bits), Expect = 4.8e-45, P = 4.8e-45
Identities = 123/366 (33%), Positives = 202/366 (55%)
Query: 81 LKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKE---RWGPED 137
LK+ V T IQ P +L G+D++G A+TGSGKTLAF++P + + ++G D
Sbjct: 128 LKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQPNLKYG--D 185
Query: 138 GVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPG 197
G ++++PTRELA+Q+ GG ++IL+ PG
Sbjct: 186 GPIVLVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQGVHILIACPG 245
Query: 198 RLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKS 257
RL+ +++ + ++ L+LDEAD++LD+GF+ + IV Q+ RQT ++SAT K
Sbjct: 246 RLIDLLEQNVT-NLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRPDRQTLMWSATWPKE 304
Query: 258 VQDLARLSLKDPQYLSVHEESVTATPNR-LQQTAMIVPLEQKLDMLWSFIKAHL--NSKI 314
VQ LA+ K+ Q + V+ S+T T R ++Q ++ +K+ L S ++ N +I
Sbjct: 305 VQALAKDLCKE-QPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKSLLQRIFKDNDRI 363
Query: 315 LVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS-VLFCTDVAS 373
+VF+ + K ++ +A + G+P +C++G KQ+ R + +F +S ++ TDVAS
Sbjct: 364 IVFVETKKNADFITKALRL--DGMPALCIHGDKKQEERRWVLNEFKTGKSPIMIATDVAS 421
Query: 374 RGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM---LEK-LR 429
RGLD K V +V+ D P + Y+HR+GRT R S G S FLT + ++ L K LR
Sbjct: 422 RGLDI-KNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAKDLVKILR 480
Query: 430 EAKIPI 435
E++ P+
Sbjct: 481 ESEQPV 486
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 490 (177.5 bits), Expect = 4.9e-45, P = 4.9e-45
Identities = 139/435 (31%), Positives = 214/435 (49%)
Query: 2 KKSKRKPNRKAVRSMEIEEIELLNSWIDSQKPE-SGTNPLSFPPLGKKEPIGRIGEDSFS 60
KK R + ++ E+ + PE + P L +K+ I G D
Sbjct: 110 KKFGNPGERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCP 169
Query: 61 KYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAF 120
K V + P + L D F + T IQ P +L GRD++G A+TGSGKTLA+
Sbjct: 170 KPVFAFHHANFP--QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY 227
Query: 121 VIPVLEKL----YKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGR 176
++P + + Y ER G DG ++++PTRELA Q+ V GK + + GG
Sbjct: 228 LLPAIVHINHQPYLER-G--DGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGA 284
Query: 177 RDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNA 236
++ + I + TPGRL+ + E+ + + L+LDEADR+LD+GF+ +
Sbjct: 285 PKGPQIRDLERGVEICIATPGRLIDFL-ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRK 343
Query: 237 IVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLE 296
IV Q+ RQT ++SAT K V+ LA L+D ++V ++A N LQ + + E
Sbjct: 344 IVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESE 403
Query: 297 Q--KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMA 354
+ KL L I A +K ++F+ + ++ + + R G P MC++G Q R
Sbjct: 404 KDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMR--RDGWPAMCIHGDKSQPERDW 461
Query: 355 IYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRS 413
+ +F K +L TDVASRGLD V +V+ D P Y+HR+GRTAR + G +
Sbjct: 462 VLNEFRSGKAPILIATDVASRGLDVED-VKFVINYDYPNSSEDYVHRIGRTARSTNKGTA 520
Query: 414 VLFLTPTEMKMLEKL 428
F TP +K +L
Sbjct: 521 YTFFTPGNLKQAREL 535
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 490 (177.5 bits), Expect = 4.9e-45, P = 4.9e-45
Identities = 139/435 (31%), Positives = 214/435 (49%)
Query: 2 KKSKRKPNRKAVRSMEIEEIELLNSWIDSQKPE-SGTNPLSFPPLGKKEPIGRIGEDSFS 60
KK R + ++ E+ + PE + P L +K+ I G D
Sbjct: 110 KKFGNPGERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCP 169
Query: 61 KYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAF 120
K V + P + L D F + T IQ P +L GRD++G A+TGSGKTLA+
Sbjct: 170 KPVFAFHHANFP--QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY 227
Query: 121 VIPVLEKL----YKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGR 176
++P + + Y ER G DG ++++PTRELA Q+ V GK + + GG
Sbjct: 228 LLPAIVHINHQPYLER-G--DGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGA 284
Query: 177 RDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNA 236
++ + I + TPGRL+ + E+ + + L+LDEADR+LD+GF+ +
Sbjct: 285 PKGPQIRDLERGVEICIATPGRLIDFL-ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRK 343
Query: 237 IVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLE 296
IV Q+ RQT ++SAT K V+ LA L+D ++V ++A N LQ + + E
Sbjct: 344 IVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESE 403
Query: 297 Q--KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMA 354
+ KL L I A +K ++F+ + ++ + + R G P MC++G Q R
Sbjct: 404 KDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMR--RDGWPAMCIHGDKSQPERDW 461
Query: 355 IYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRS 413
+ +F K +L TDVASRGLD V +V+ D P Y+HR+GRTAR + G +
Sbjct: 462 VLNEFRSGKAPILIATDVASRGLDVED-VKFVINYDYPNSSEDYVHRIGRTARSTNKGTA 520
Query: 414 VLFLTPTEMKMLEKL 428
F TP +K +L
Sbjct: 521 YTFFTPGNLKQAREL 535
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 474 (171.9 bits), Expect = 6.3e-45, P = 6.3e-45
Identities = 125/370 (33%), Positives = 198/370 (53%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F L + + L G+ +MT IQ SLP L G D++G KTGSGKT AF + +L K
Sbjct: 3 FSTLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNK 62
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKH-HNFSAGLLIGGRRDVDMEKEHV 186
L +R+ + ++++ PTRELADQ+ ++ + + HN L GG V M + +
Sbjct: 63 LDVKRFR----IQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGG---VPMGPQ-I 114
Query: 187 NEL----NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP 242
L +I+V TPGR++ H+D D S L +L+LDEADR+L++GF+ L+AI+ Q P
Sbjct: 115 GSLEHGAHIIVGTPGRIVDHLDRN-RLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSP 173
Query: 243 KHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ-KLDM 301
+ RQT LFSAT + +Q +A+ + +P + +VT N ++Q + ++ ++
Sbjct: 174 RERQTLLFSATFPEQIQSIAKQIMYNPVMVKA---AVTHEKNTIEQHFYQLDDDKSRMQA 230
Query: 302 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 361
L + H +VF + ++ + V + + L G ++ L+G ++Q R QF
Sbjct: 231 LQLLLLEHKPESAVVFCNTKRETQKVADELEGL--GFSVLALHGDLEQRDRDETLLQFAN 288
Query: 362 KRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 420
K + VL TDVA+RGLD + A+D V D +IHR+GRT R S G + F
Sbjct: 289 KSACVLVATDVAARGLDID-ALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQ 347
Query: 421 EMKMLEKLRE 430
+ + L E
Sbjct: 348 DGYKIALLEE 357
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 474 (171.9 bits), Expect = 6.3e-45, P = 6.3e-45
Identities = 125/370 (33%), Positives = 198/370 (53%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F L + + L G+ +MT IQ SLP L G D++G KTGSGKT AF + +L K
Sbjct: 3 FSTLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNK 62
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKH-HNFSAGLLIGGRRDVDMEKEHV 186
L +R+ + ++++ PTRELADQ+ ++ + + HN L GG V M + +
Sbjct: 63 LDVKRFR----IQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGG---VPMGPQ-I 114
Query: 187 NEL----NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP 242
L +I+V TPGR++ H+D D S L +L+LDEADR+L++GF+ L+AI+ Q P
Sbjct: 115 GSLEHGAHIIVGTPGRIVDHLDRN-RLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSP 173
Query: 243 KHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ-KLDM 301
+ RQT LFSAT + +Q +A+ + +P + +VT N ++Q + ++ ++
Sbjct: 174 RERQTLLFSATFPEQIQSIAKQIMYNPVMVKA---AVTHEKNTIEQHFYQLDDDKSRMQA 230
Query: 302 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 361
L + H +VF + ++ + V + + L G ++ L+G ++Q R QF
Sbjct: 231 LQLLLLEHKPESAVVFCNTKRETQKVADELEGL--GFSVLALHGDLEQRDRDETLLQFAN 288
Query: 362 KRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 420
K + VL TDVA+RGLD + A+D V D +IHR+GRT R S G + F
Sbjct: 289 KSACVLVATDVAARGLDID-ALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQ 347
Query: 421 EMKMLEKLRE 430
+ + L E
Sbjct: 348 DGYKIALLEE 357
>UNIPROTKB|F1NM06 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:AADN02026504
EMBL:AADN02026505 EMBL:AADN02026506 EMBL:AADN02026507
EMBL:AADN02026508 EMBL:AADN02026509 EMBL:AADN02026510
IPI:IPI00573288 ProteinModelPortal:F1NM06
Ensembl:ENSGALT00000005588 Uniprot:F1NM06
Length = 690
Score = 333 (122.3 bits), Expect = 6.7e-45, Sum P(2) = 6.7e-45
Identities = 105/348 (30%), Positives = 178/348 (51%)
Query: 3 KSKRKPNRKAV--RSMEIEEIELLNSWIDSQKPESGTNPLSFPPLGKKEPIGRIGEDSFS 60
+ K +P+++++ + + + E S + + N P + +K + ++ E+ F+
Sbjct: 36 REKGRPSKRSLPKKQLNANQNESQKSKLFIKTSSLFRNNPDIPEIHRKA-VQQVQENVFT 94
Query: 61 KYVGSTRFDQLPISKKTKSGLKDA-GFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLA 119
+ F QL + + + MT +Q+ ++P L G+D L ++TGSGKTLA
Sbjct: 95 ----TDSFSQLDLHPHLIATITTVLKICSMTSVQKQTIPVLLQGKDALVRSQTGSGKTLA 150
Query: 120 FVIPVLEKLY--KERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSA-GLLIGGR 176
+ IP+++ L + + DG ++++ PTRELA Q FD ++ + K + G+L+GG
Sbjct: 151 YGIPLVQSLQGMQSKIQRSDGPYALVLVPTRELALQTFDTIQKLLKPFTWIVPGVLMGGE 210
Query: 177 RDVDMEKEHVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALN 235
+ EK + + +NIL+ TPGRL+ H+ T + Q LI+DEADRILD+GF+K +
Sbjct: 211 KRKS-EKARLRKGINILISTPGRLVDHIKSTECIHFRRTQWLIIDEADRILDLGFEKDVT 269
Query: 236 AIVSQLPKHRQT---FLFSATQTKSVQDLARLSLKDPQYLSVHEE-------------SV 279
I++ L R+T L SAT T+ V LA +SL DP +S+ +E
Sbjct: 270 VILNALNAERETRQNVLLSATLTEGVTRLADISLNDPIRISIADEIRESLKPALQTEKEA 329
Query: 280 TATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILV-F-LTSCKQVK 325
++ NR+ Q VP +KL + + + L L F L CK K
Sbjct: 330 NSSSNRMDQENFAVP--EKLKQYFMMVPSKLRLVTLAAFVLEKCKYEK 375
Score = 217 (81.4 bits), Expect = 6.7e-45, Sum P(2) = 6.7e-45
Identities = 49/140 (35%), Positives = 78/140 (55%)
Query: 313 KILVFLTSCKQVKYVFEAFKKLRPG----------------IPLMCLYGRMKQDRRMAIY 356
K+++F +SC+QV++ +E + G + + L+G M+Q+ R ++
Sbjct: 378 KMIIFFSSCEQVEFHYELLVNVLSGELESEQPKRSSVSSVQLQFLRLHGNMEQEERTEVF 437
Query: 357 AQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVL 415
+F + K +L CTDVA+RGLD + V W+VQ + P A YIHR+GRTAR G S+L
Sbjct: 438 QEFLKSKTGILLCTDVAARGLDLPQ-VTWIVQYNAPASPAEYIHRIGRTARIGCHGNSLL 496
Query: 416 FLTPTEMKMLEKLREAKIPI 435
L P+E + + L KI +
Sbjct: 497 VLAPSEAEYVSLLASHKINV 516
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 473 (171.6 bits), Expect = 8.2e-45, P = 8.2e-45
Identities = 124/372 (33%), Positives = 196/372 (52%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F L ++ + + L AG+ T IQ ++P + GRDI+G A+TG+GKTLAF P+L++
Sbjct: 9 FQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILDR 68
Query: 128 LYKERW-GPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV 186
L + P G ++++PTRELA Q+ G N ++ GG + ++
Sbjct: 69 LSRNASPAPVRGTRVLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQLE 128
Query: 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246
+ILV TPGRL+ M++ +++ LILDEAD++LD+GF AL AI +P RQ
Sbjct: 129 RGAHILVATPGRLIDLMEQRA-VSLDKVETLILDEADQMLDLGFIHALRAIAKNVPSKRQ 187
Query: 247 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFI 306
T FSAT K+V+ LA L++P +SV + TA R++Q V +K +L I
Sbjct: 188 TLFFSATMPKAVESLAATFLRNPAEVSVAPPATTA--GRIEQRVCFVEQPEKASLLIEKI 245
Query: 307 K-AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-S 364
+ L S I VF + V + K I + ++G Q +R F R
Sbjct: 246 RDPELRSAI-VFTRTKHGADGVVKRLAKA--DIDSVAIHGNKSQSQREKALEAFKAGRVP 302
Query: 365 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE--- 421
+L TD+A+RG+ + A+ V+ D P+ ++HR+GRTAR + G ++ F + E
Sbjct: 303 ILVATDIAARGIHVD-ALTHVINYDLPDVPEQFVHRIGRTARAGNSGVAISFCSRDERPT 361
Query: 422 MKMLEKLREAKI 433
++ +EKL K+
Sbjct: 362 LRAIEKLTGLKL 373
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 471 (170.9 bits), Expect = 1.4e-44, P = 1.4e-44
Identities = 117/367 (31%), Positives = 194/367 (52%)
Query: 67 RFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLE 126
+F + ++ LK G T IQ +LP +L G+D++ ++KTGSGKTLAF++P L+
Sbjct: 2 QFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQ 61
Query: 127 KLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV 186
++ R + +I+ PTRELA Q++ L+ + + + A ++GG D K
Sbjct: 62 RVISTRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALA 121
Query: 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP-KHR 245
E + +V TPGR+ H+++ N + L++LILDEADR+LD+GF L AI K R
Sbjct: 122 KEPHFIVATPGRIADHLEQK-NLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHKRR 180
Query: 246 QTFLFSATQTKS-VQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP-LEQKLDMLW 303
QT +FSAT S + ++A LK+P ++++ + A + Q + L+ K +L
Sbjct: 181 QTLMFSATLDHSEINEIAAALLKNPLHVAIG--TAHAEHQDISQRIYLCDHLDHKEALLS 238
Query: 304 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K 362
+ + ++++F + + + A K G L G +KQ R I QF +
Sbjct: 239 RLLSDESHKQVIIFTATRADTERL--AAKLSAQGFATAALSGELKQAARNQIMDQFARGQ 296
Query: 363 RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 422
+ +L TDVASRGLD V V+ D P+ Y+HR+GRT R + G ++ + P +
Sbjct: 297 QQILVTTDVASRGLDLLN-VSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDW 355
Query: 423 KMLEKLR 429
+K++
Sbjct: 356 DSFKKVQ 362
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 471 (170.9 bits), Expect = 1.4e-44, P = 1.4e-44
Identities = 117/367 (31%), Positives = 194/367 (52%)
Query: 67 RFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLE 126
+F + ++ LK G T IQ +LP +L G+D++ ++KTGSGKTLAF++P L+
Sbjct: 2 QFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQ 61
Query: 127 KLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV 186
++ R + +I+ PTRELA Q++ L+ + + + A ++GG D K
Sbjct: 62 RVISTRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALA 121
Query: 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP-KHR 245
E + +V TPGR+ H+++ N + L++LILDEADR+LD+GF L AI K R
Sbjct: 122 KEPHFIVATPGRIADHLEQK-NLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHKRR 180
Query: 246 QTFLFSATQTKS-VQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP-LEQKLDMLW 303
QT +FSAT S + ++A LK+P ++++ + A + Q + L+ K +L
Sbjct: 181 QTLMFSATLDHSEINEIAAALLKNPLHVAIG--TAHAEHQDISQRIYLCDHLDHKEALLS 238
Query: 304 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K 362
+ + ++++F + + + A K G L G +KQ R I QF +
Sbjct: 239 RLLSDESHKQVIIFTATRADTERL--AAKLSAQGFATAALSGELKQAARNQIMDQFARGQ 296
Query: 363 RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 422
+ +L TDVASRGLD V V+ D P+ Y+HR+GRT R + G ++ + P +
Sbjct: 297 QQILVTTDVASRGLDLLN-VSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDW 355
Query: 423 KMLEKLR 429
+K++
Sbjct: 356 DSFKKVQ 362
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 453 (164.5 bits), Expect = 2.1e-44, Sum P(2) = 2.1e-44
Identities = 119/368 (32%), Positives = 189/368 (51%)
Query: 66 TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVL 125
T F++ +K GF T IQ+ + P ++ GRD++G + TGSGKTL++ +P +
Sbjct: 122 TTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAI 181
Query: 126 EKLYKERW-GPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKE 184
+ + P DG ++++PTRELA Q+ GK + GG ++
Sbjct: 182 VHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRD 241
Query: 185 HVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKH 244
+ + I + TPGRLL +D + ++ L+LDEADR+LD+GF+ + IV Q+
Sbjct: 242 LIRGVEICIATPGRLLDMLDSNKT-NLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 300
Query: 245 RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWS 304
RQT +FSAT K VQ LAR L D ++V + A+ N ++Q +V K L
Sbjct: 301 RQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHN-IKQIVEVVDNADKRARLGK 359
Query: 305 FIKAHL---NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 361
I+ L ++K+L+F T K+V F + + G P + ++G QD R + +F
Sbjct: 360 DIEEVLKDRDNKVLIF-TGTKRVADDITRFLR-QDGWPALAIHGDKAQDERDWVLNEFRT 417
Query: 362 KRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 420
+S ++ TDVASRG+D K + V D P + Y+HR+GRT R + G + + T
Sbjct: 418 GKSPIMVATDVASRGIDV-KGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSD 476
Query: 421 EMKMLEKL 428
K +L
Sbjct: 477 NAKQAREL 484
Score = 38 (18.4 bits), Expect = 2.1e-44, Sum P(2) = 2.1e-44
Identities = 7/8 (87%), Positives = 8/8 (100%)
Query: 405 ARYNSGGR 412
ARY+SGGR
Sbjct: 503 ARYSSGGR 510
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 469 (170.2 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 118/366 (32%), Positives = 193/366 (52%)
Query: 66 TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVL 125
T FD+ +KD GF K T IQ P +L GRD++G A TGSGKTL++ +P +
Sbjct: 127 TTFDEAGFPDYVLQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSI 186
Query: 126 EKLYKE---RWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDME 182
+ + ++G DG ++++PTRELA Q+ GK + GG
Sbjct: 187 VHINAQPQLQYG--DGPIVLVLAPTRELAVQIQTECSKFGKSSRIRNTCVYGGAPKGPQI 244
Query: 183 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP 242
++ + I + TPGRL+ M E + ++ L+LDEADR+LD+GF+ + IV Q+
Sbjct: 245 RDLARGVEICIATPGRLID-MLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIR 303
Query: 243 KHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDML 302
RQT ++SAT K VQ L R L DP +++ + A+ + + Q ++ K D L
Sbjct: 304 PDRQTLMWSATWPKEVQQLTRDYLNDPIQVTIGSLELAAS-HTITQLVEVIDEFSKRDRL 362
Query: 303 WSFIKAHLN---SKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF 359
+++ LN +KILVF ++ + + + G P + ++G +Q+ R + +F
Sbjct: 363 VKHLESALNEKDNKILVFASTKRTCDEITTYLRS--DGWPALAIHGDKEQNERDWVLDEF 420
Query: 360 CE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 418
+ K S++ TDVA+RG+D K + V+ D P ++ Y+HR+GRT R + G ++ F T
Sbjct: 421 RKGKTSIMVATDVAARGIDV-KGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFT 479
Query: 419 PTEMKM 424
K+
Sbjct: 480 EGNSKL 485
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 469 (170.2 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 120/378 (31%), Positives = 211/378 (55%)
Query: 67 RFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLE 126
+FD L +S + + + G+ ++T +Q+ +P +L G+DI+ A+TG+GKT AF +PVLE
Sbjct: 2 KFDTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLE 61
Query: 127 KLYKERWGPEDG--VGSIIISPTRELADQLFDVLKAVGKHHNFSA--GLLIGGRRDVDME 182
+L + P D + +++++PTRELA Q V + K+ F L + G +++ +
Sbjct: 62 QLAAK---PADKPLLRALVMTPTRELAIQ---VCANIQKYSQFLPLKTLAVYGGANMNPQ 115
Query: 183 KEHVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 241
++ V + ++ILV TPGRL + + N D S + L++DEADR+LD+GF + + + +
Sbjct: 116 RKGVEQGVDILVATPGRLFDIIGQF-NLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLI 174
Query: 242 PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDM 301
QT LFSAT + +V+ L+ L PQ+++V E + +T ++Q V +K ++
Sbjct: 175 APVHQTMLFSATYSDAVKQLSHKMLNQPQWVNVAENTTAST---VEQLVYRVDKRRKAEL 231
Query: 302 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-C 360
L + + ++LVF ++ + +++ + GI +G Q R + F
Sbjct: 232 LSELVGRNNWRQVLVFASTKECAEHLLQELTL--DGISAGVFHGDKTQGARNRVLDDFKA 289
Query: 361 EKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 420
K VL TDVA+RGLD +A+ V+ ++ P Y+HR+GRT R GR++ F++P
Sbjct: 290 GKLRVLVATDVAARGLDI-QALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPA 348
Query: 421 EMKML---EKLREAKIPI 435
+ +ML E L K+P+
Sbjct: 349 DDEMLAEIEALIGEKLPV 366
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 469 (170.2 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 122/392 (31%), Positives = 210/392 (53%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F L +S +++ G+ + IQ ++P L G+D++ AA+TG+GKT F +P+LE
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 128 LYKERWGPE---DGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKE 184
L K GP+ + V ++I++PTRELA Q+ D + G+H + ++ GG + +
Sbjct: 63 LAK---GPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQR 119
Query: 185 HVNELNILVCTPGRLLQHMDETP-NFDCSQLQILILDEADRILDVGFKKALNAIVSQLPK 243
+ILV TPGRL+ ++ FD QL+IL+LDEADR+LD+GF + ++ I+ LP+
Sbjct: 120 MCKGADILVATPGRLMDLYNQNAVKFD--QLEILVLDEADRMLDMGFIRDIHKILKLLPE 177
Query: 244 HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLW 303
RQ LFSAT + +++LA+ + +P +SV + TA ++Q +++K DML
Sbjct: 178 KRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA--RTVEQCIYPADVKKKPDMLV 235
Query: 304 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-CEK 362
+K ++LVF+ + + + G+ ++G Q R A F +
Sbjct: 236 KLVKEGNWQQVLVFMRTKHGANRLATYLNE--QGLTAAAIHGNKSQGARTRALADFKAGE 293
Query: 363 RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 422
+L TD+A+RG+D + + VV + P+ Y+HR+GRT R G+++ ++ E
Sbjct: 294 VRILVATDIAARGIDIPQ-LPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEA 352
Query: 423 KML---EKLREAKIPIHFTKANTKRLQPVSGL 451
L E+L +A +P + N +P + L
Sbjct: 353 PELFAIERLTQALLP----RVNLAGFEPTNQL 380
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 469 (170.2 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 124/367 (33%), Positives = 201/367 (54%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F L +S + + D G+ K T IQ+ ++P L G+DI+ AA+TG+GKT +FV+P+LE+
Sbjct: 3 FSTLKLSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLEQ 62
Query: 128 L---YKERWGPE---DGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDM 181
L YKE G + + ++I+ PTRELA Q+ + K+ + S+ + GG +
Sbjct: 63 LNSQYKET-GKKLRAKRIRALILVPTRELAVQVEASISQYAKYLDISSMAMYGGVDAQEQ 121
Query: 182 EKEHVNELNILVCTPGRLLQHMDETP-NFDCSQLQILILDEADRILDVGFKKALNAIVSQ 240
++ + ++ILV TPGRLL + +FD +L +L+LDEADR+LD+GF +N I+ +
Sbjct: 122 KQRLIWGVDILVATPGRLLDMTHQRVLHFD--ELDMLVLDEADRMLDMGFIDDINKIIER 179
Query: 241 LPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLD 300
LP+HRQ LFSAT ++ V+ LA+ ++ P +S+ + A+ +++Q + V K
Sbjct: 180 LPEHRQNLLFSATMSEEVRGLAKRTIHKPVEISIGADK--ASKPKIEQWLVTVDKANKSA 237
Query: 301 MLWSFIKAHLNSKILVFL-TSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF 359
+L I + L+F+ T K V + K+ GI ++ QD R I F
Sbjct: 238 LLSHIITTQNWQQALIFIETKHGAAKLVSQLEKR---GIVAESIHSGRAQDIREKILNDF 294
Query: 360 CE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 418
K L T +A+RGLD + + V+ D P V YIHR+GRT R + G ++ ++
Sbjct: 295 KSGKIKFLVATAIAARGLDIGE-LSRVINYDLPAQVDDYIHRIGRTGRAGASGEAISLVS 353
Query: 419 PTEMKML 425
+ L
Sbjct: 354 KDNFREL 360
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 469 (170.2 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 120/378 (31%), Positives = 211/378 (55%)
Query: 67 RFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLE 126
+FD L +S + + + G+ ++T +Q+ +P +L G+DI+ A+TG+GKT AF +PVLE
Sbjct: 2 KFDTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLE 61
Query: 127 KLYKERWGPEDG--VGSIIISPTRELADQLFDVLKAVGKHHNFSA--GLLIGGRRDVDME 182
+L + P D + +++++PTRELA Q V + K+ F L + G +++ +
Sbjct: 62 QLAAK---PADKPLLRALVMTPTRELAIQ---VCANIQKYSQFLPLKTLAVYGGANMNPQ 115
Query: 183 KEHVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 241
++ V + ++ILV TPGRL + + N D S + L++DEADR+LD+GF + + + +
Sbjct: 116 RKGVEQGVDILVATPGRLFDIIGQF-NLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLI 174
Query: 242 PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDM 301
QT LFSAT + +V+ L+ L PQ+++V E + +T ++Q V +K ++
Sbjct: 175 APVHQTMLFSATYSDAVKQLSHKMLNQPQWVNVAENTTAST---VEQLVYRVDKRRKAEL 231
Query: 302 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-C 360
L + + ++LVF ++ + +++ + GI +G Q R + F
Sbjct: 232 LSELVGRNNWRQVLVFASTKECAEHLLQELTL--DGISAGVFHGDKTQGARNRVLDDFKA 289
Query: 361 EKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 420
K VL TDVA+RGLD +A+ V+ ++ P Y+HR+GRT R GR++ F++P
Sbjct: 290 GKLRVLVATDVAARGLDI-QALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPA 348
Query: 421 EMKML---EKLREAKIPI 435
+ +ML E L K+P+
Sbjct: 349 DDEMLAEIEALIGEKLPV 366
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 469 (170.2 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 122/392 (31%), Positives = 210/392 (53%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F L +S +++ G+ + IQ ++P L G+D++ AA+TG+GKT F +P+LE
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 128 LYKERWGPE---DGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKE 184
L K GP+ + V ++I++PTRELA Q+ D + G+H + ++ GG + +
Sbjct: 63 LAK---GPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQR 119
Query: 185 HVNELNILVCTPGRLLQHMDETP-NFDCSQLQILILDEADRILDVGFKKALNAIVSQLPK 243
+ILV TPGRL+ ++ FD QL+IL+LDEADR+LD+GF + ++ I+ LP+
Sbjct: 120 MCKGADILVATPGRLMDLYNQNAVKFD--QLEILVLDEADRMLDMGFIRDIHKILKLLPE 177
Query: 244 HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLW 303
RQ LFSAT + +++LA+ + +P +SV + TA ++Q +++K DML
Sbjct: 178 KRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA--RTVEQCIYPADVKKKPDMLV 235
Query: 304 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-CEK 362
+K ++LVF+ + + + G+ ++G Q R A F +
Sbjct: 236 KLVKEGNWQQVLVFMRTKHGANRLATYLNE--QGLTAAAIHGNKSQGARTRALADFKAGE 293
Query: 363 RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 422
+L TD+A+RG+D + + VV + P+ Y+HR+GRT R G+++ ++ E
Sbjct: 294 VRILVATDIAARGIDIPQ-LPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEA 352
Query: 423 KML---EKLREAKIPIHFTKANTKRLQPVSGL 451
L E+L +A +P + N +P + L
Sbjct: 353 PELFAIERLTQALLP----RVNLAGFEPTNQL 380
>WB|WBGene00019245 [details] [associations]
symbol:sacy-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
NextBio:875413 Uniprot:Q9N5K1
Length = 630
Score = 469 (170.2 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 128/361 (35%), Positives = 197/361 (54%)
Query: 82 KDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPV----LEKLYKERWGPED 137
K G V T IQ +P +L GRD++G A TGSGKT+ FV+P+ LE+ K + +
Sbjct: 206 KQKGIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSE 265
Query: 138 GVGSIIISPTRELADQLFDVL----KAVGKHH--NFSAGLLIGGRRDVDMEKEHVNELNI 191
G +II P+RELA Q+FD++ A+GK AGL IGG + K+ + ++I
Sbjct: 266 GPFGLIIVPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCIGGVPIGEQAKDVRDGIHI 325
Query: 192 LVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 251
+V TPGRL + + + + L+LDEADR+LD+GF+ + +I RQT LFS
Sbjct: 326 VVATPGRLSDMLTKKI-INLEVCRYLVLDEADRMLDMGFEDEIKSIFYFFKAQRQTLLFS 384
Query: 252 ATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLN 311
AT + +Q A+ +L P ++V A+ N LQ+ V E KL + ++ +
Sbjct: 385 ATMPRKIQFFAKSALVKPIVVNVGRAGA-ASLNVLQELEF-VRSENKLVRVLECLQK-TS 441
Query: 312 SKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ-DRRMAIYAQFCEKRSVLFCTD 370
K+L+F V ++E L G+ + ++G Q DR I A ++ VL TD
Sbjct: 442 PKVLIFAEKKVDVDNIYEYL--LVKGVEVASIHGGKDQSDRHAGIEAFRKNEKDVLVATD 499
Query: 371 VASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTP-TEMKMLEKLR 429
VAS+GLDF + ++ V+ D PED+ +Y+HR+GRT R G + F+ +EM +L L+
Sbjct: 500 VASKGLDF-QGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFINKKSEMSVLSDLK 558
Query: 430 E 430
+
Sbjct: 559 Q 559
>CGD|CAL0000625 [details] [associations]
symbol:SPB4 species:5476 "Candida albicans" [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K14809 EMBL:AACQ01000202 EMBL:AACQ01000200
RefSeq:XP_711358.1 RefSeq:XP_711406.1 ProteinModelPortal:Q59NP8
STRING:Q59NP8 GeneID:3647008 GeneID:3647042 KEGG:cal:CaO19.11631
KEGG:cal:CaO19.4154 CGD:CAL0005749 Uniprot:Q59NP8
Length = 631
Score = 380 (138.8 bits), Expect = 2.6e-44, Sum P(3) = 2.6e-44
Identities = 98/300 (32%), Positives = 163/300 (54%)
Query: 141 SIIISPTRELADQLFDVLKAV------GKHHNFSAGLLIGGRRDV--DMEKEHVNELNIL 192
SI++SPTRELA+Q+ V V K + LL+G +V D+ + N+ IL
Sbjct: 96 SIVLSPTRELANQIQSVFNQVLQYLPEDKGTRINTQLLVGSIGNVREDLNQFLTNQPQIL 155
Query: 193 VCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSA 252
+ TPGR+L+ + + + S L+I+ILDEAD++LD F+K + I+ +LPK R+T LFSA
Sbjct: 156 IGTPGRILEFLGSSQSIKTSSLEIVILDEADKLLDFSFEKDVINILKKLPKQRRTGLFSA 215
Query: 253 TQTKSVQDLARLSLKDPQYLSVHEESV----TATPNRLQQTAMIVPLEQKLDMLWSFIKA 308
T + + + R + +P + V ++ + +P LQ + M++ E K+ L + +
Sbjct: 216 TISSAGNTIFRTGMNNPVKVQVKSKNYFGEQSNSPKSLQLSYMMINPELKITTLLTILSK 275
Query: 309 HLNSKILVFLTSCKQVKYVFEAFKKL----RPGIPL--MCLYGRMKQDRRMAIYAQFCEK 362
+ K +V+ +C VK+ ++ F K+ PL L+G++ R+ F +
Sbjct: 276 YQYKKAIVYFPTCTSVKHFYQIFNKVYQQESSDEPLKFFSLHGQLNTKSRLKTLDNFTQG 335
Query: 363 -----RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFL 417
+ +L TDVA+RG+D VD V+Q+D P D ++HR GRT R N GR+++ L
Sbjct: 336 DINLYKHILMTTDVAARGIDIPD-VDLVIQIDPPTDPNVFLHRCGRTGRANKVGRAIVML 394
Score = 150 (57.9 bits), Expect = 2.6e-44, Sum P(3) = 2.6e-44
Identities = 41/106 (38%), Positives = 62/106 (58%)
Query: 67 RFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLE 126
R+D P K+ S + G+ MT +Q +++P +D++ A TGSGKTL+FVIPVL+
Sbjct: 14 RYDLHPWIKEAISSM---GYPTMTPVQASTIPLLSGNKDVVVEAVTGSGKTLSFVIPVLQ 70
Query: 127 KLYKERWGPE-DG----------VGSIIISPTRELADQLFDVLKAV 161
K+ + P+ DG + SI++SPTRELA+Q+ V V
Sbjct: 71 KISDRLYKPDSDGDLPEPVKRGHMLSIVLSPTRELANQIQSVFNQV 116
Score = 43 (20.2 bits), Expect = 2.6e-44, Sum P(3) = 2.6e-44
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 693 RRKKAKIYFDSDSDNDNDERKQNKDD 718
RRK+ KI +++ + ERK+NK D
Sbjct: 546 RRKELKI--KNEAWSSKSERKENKLD 569
>FB|FBgn0021995 [details] [associations]
symbol:Rs1 "Rs1" species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0042254
"ribosome biogenesis" evidence=NAS] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE013599 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0016779 HSSP:P10081 GeneTree:ENSGT00550000074997 KO:K13181
CTD:6247 EMBL:BT004908 RefSeq:NP_651970.1 UniGene:Dm.11481
SMR:Q7JQN4 STRING:Q7JQN4 EnsemblMetazoa:FBtr0088788 GeneID:44087
KEGG:dme:Dmel_CG2173 UCSC:CG2173-RA FlyBase:FBgn0021995
InParanoid:Q7JQN4 OMA:EHYIHRV OrthoDB:EOG42NGFQ GenomeRNAi:44087
NextBio:836725 Uniprot:Q7JQN4
Length = 782
Score = 486 (176.1 bits), Expect = 2.8e-44, P = 2.8e-44
Identities = 127/368 (34%), Positives = 200/368 (54%)
Query: 66 TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVL 125
T F Q+ +S+ + G++ T IQ +++P +L GRDI G A TG+GKT A+++P L
Sbjct: 157 TSFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTL 216
Query: 126 EKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEH 185
E+L + +++ PTREL Q++ V K + + GL IGG DV ++
Sbjct: 217 ERLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGL-DVKAQEAV 275
Query: 186 VNEL-NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKH 244
+ + +I++ TPGRL+ H+ TP+F +++LILDEADR+LD F + + I++ K
Sbjct: 276 LRQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKT 335
Query: 245 RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLD---M 301
RQT LFSAT ++ V+DLA +SL P + V+ A L+Q + + +++ D +
Sbjct: 336 RQTMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAF--NLRQEFIRIREDKEGDREPI 393
Query: 302 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 361
L S I + +VF+ + KQ + L G+ L+G + Q +R+ +F E
Sbjct: 394 LASLICRTFHDHCMVFVQTKKQAHRLHILLGLL--GVRAGELHGNLTQQQRLESLKKFKE 451
Query: 362 KR-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 420
++ VL TDVA+RGLD V V+ P YIHRVGRTAR G SV
Sbjct: 452 EQIDVLIATDVAARGLDI-VGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEK 510
Query: 421 EMKMLEKL 428
E K+++ +
Sbjct: 511 ERKIVKDI 518
>UNIPROTKB|Q4K4K3 [details] [associations]
symbol:dbpA "ATP-independent RNA helicase DbpA"
species:220664 "Pseudomonas protegens Pf-5" [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 OMA:THEKSTI RefSeq:YP_262830.1
ProteinModelPortal:Q4K4K3 STRING:Q4K4K3 GeneID:3480144
KEGG:pfl:PFL_5772 PATRIC:19881049
BioCyc:PFLU220664:GIX8-5812-MONOMER Uniprot:Q4K4K3
Length = 461
Score = 468 (169.8 bits), Expect = 3.2e-44, P = 3.2e-44
Identities = 125/385 (32%), Positives = 203/385 (52%)
Query: 65 STRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPV 124
+T F+ LP+S + L G+ +MT IQ SLP L G D++ AKTGSGKT AF I +
Sbjct: 5 ATAFNTLPLSPAMLANLDSLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGL 64
Query: 125 LEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGK-HHNFSAGLLIGGRRDVDMEK 183
L + +G + +++I PTRELADQ+ ++ + + N L GG
Sbjct: 65 LNPINPRYFGCQ----ALVICPTRELADQVAKEVRRLARAEDNIKVLTLCGGVSFGPQIA 120
Query: 184 EHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPK 243
+ +I+V TPGR+ QH+ + + L L+LDEADR+LD+GF A+ I+ + P
Sbjct: 121 SLEHGAHIIVGTPGRIQQHLRKG-SLVLDGLNTLVLDEADRMLDMGFYDAIEDIIEKTPS 179
Query: 244 HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLW 303
RQT LFSAT ++ LA ++DPQ +V E+ +++Q + E+++ +
Sbjct: 180 RRQTLLFSATYPVGIKQLASKFMRDPQ--TVKAEAFH-DDTQIEQRFYEISPEERMSAVT 236
Query: 304 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR 363
+ + + F + +QV+ + GI + L+G ++Q R + A F +
Sbjct: 237 KVLHHFRPASCVAFCFTKQQVQETVDHLTA--KGISAVGLHGDLEQRDRDQVLAMFANRS 294
Query: 364 -SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 422
SVL TDVA+RGLD + A+D V+ V+ D +IHRVGRT R G +V + P+E
Sbjct: 295 TSVLVATDVAARGLDID-ALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSEA 353
Query: 423 KMLEKLREA-KIPIHFTKANTKRLQ 446
+ + + K P+++ + + + Q
Sbjct: 354 HRAQAIEQLQKAPLNWDQVDNLKSQ 378
>DICTYBASE|DDB_G0271708 [details] [associations]
symbol:ddx31 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0271708 GO:GO:0005524
GenomeReviews:CM000151_GR GO:GO:0003723 EMBL:AAFI02000006
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806 HSSP:P10081
RefSeq:XP_645498.1 ProteinModelPortal:Q869P0
EnsemblProtists:DDB0234202 GeneID:8618126 KEGG:ddi:DDB_G0271708
OMA:THIQEAS Uniprot:Q869P0
Length = 908
Score = 349 (127.9 bits), Expect = 3.3e-44, Sum P(3) = 3.3e-44
Identities = 88/243 (36%), Positives = 139/243 (57%)
Query: 88 KMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPT 147
K T IQ AS+ L G D L A+TGSGKTL+++IPV++KL ++R DG +II+PT
Sbjct: 230 KPTHIQEASITPILKGNDALVKAQTGSGKTLSYLIPVVQKLTEQRVTRSDGCYCVIITPT 289
Query: 148 RELADQLFDVLKAVGKHHNFSA-GLLIGGRRDVDMEKEHVNE-LNILVCTPGRLLQHMDE 205
REL+ Q+++ L+ + K + G+++GG EK + + +NILV TPGRLL H+
Sbjct: 290 RELSSQIYEELQKLLKPFYWIVPGIIMGGENR-SAEKARIRKGINILVATPGRLLDHLQN 348
Query: 206 TPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKH-------RQTFLFSATQTKSV 258
T +F ++ ILDEAD++LD+GF+K + I++ L RQ L SAT ++ +
Sbjct: 349 TQSFPTDNIKWCILDEADKLLDLGFEKDVTTIINLLDSKKRTMKFKRQNILVSATLSEGI 408
Query: 259 QDLARLSLKDPQYLSVHEESVTATPNRLQQTAM-IVPLEQKLDMLWSFI--KAHLNSKIL 315
LA LSL P Y+ + + + N Q ++ ++LD + + K L S ++
Sbjct: 409 SRLASLSLTSPVYIGLDSKVLEKGENPFQAAEKEMLQAPKQLDQFYVEVESKERLTS-LI 467
Query: 316 VFL 318
F+
Sbjct: 468 AFI 470
Score = 192 (72.6 bits), Expect = 3.3e-44, Sum P(3) = 3.3e-44
Identities = 40/106 (37%), Positives = 60/106 (56%)
Query: 338 IPLMCLYGRMKQDRRMAIYAQFCEK-RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVAS 396
+P+ L+G + Q R + F +L TDV++RGLD +V+W+VQ D D
Sbjct: 604 VPIFKLHGELDQQTRTKTFFDFKNSPNGILLTTDVSARGLDL-PSVNWIVQYDPCSDTKD 662
Query: 397 YIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKIPIHFTKANT 442
YIHR+GRTAR + G S+LFL P+E K ++ L + + + K T
Sbjct: 663 YIHRIGRTARLGNQGCSLLFLLPSEKKYIDHLAKFNVSVKEMKVTT 708
Score = 62 (26.9 bits), Expect = 3.5e-13, Sum P(3) = 3.5e-13
Identities = 22/77 (28%), Positives = 36/77 (46%)
Query: 245 RQTFLFSATQTKSVQDLARLSLKDPQYLSVH--------------EESVTATPNRLQQTA 290
RQ L SAT ++ + LA LSL P Y+ + E+ + P +L Q
Sbjct: 395 RQNILVSATLSEGISRLASLSLTSPVYIGLDSKVLEKGENPFQAAEKEMLQAPKQLDQFY 454
Query: 291 MIVPLEQKLDMLWSFIK 307
+ V +++L L +FI+
Sbjct: 455 VEVESKERLTSLIAFIR 471
Score = 54 (24.1 bits), Expect = 7.2e-30, Sum P(3) = 7.2e-30
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 311 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCT 369
NSK++VF +SC V + F ++ + +Q ++ + Q +K S +F T
Sbjct: 492 NSKMIVFFSSCDSVDFHHYMFSNMKMDKERGVKRTKKEQIKQDKLIQQHKQKNSKIFQT 550
Score = 50 (22.7 bits), Expect = 3.3e-44, Sum P(3) = 3.3e-44
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 451 LLAALLVKYPDMQHRAQKAFITYLRSVHIQK-D-KEVFDVTKLSIDEFSASLGLPMTP 506
L L+ + A+ A+ ++LRS K D K +F ++ L + S S L TP
Sbjct: 740 LFERFLIYDSKAKEMARCAYQSFLRSYATHKADVKSIFHISYLHLGHVSKSFALRETP 797
Score = 47 (21.6 bits), Expect = 2.6e-28, Sum P(2) = 2.6e-28
Identities = 9/38 (23%), Positives = 23/38 (60%)
Query: 689 MERGRRKKAKIY-FDSDSDNDNDERKQNKDDNGPNIDS 725
+++ ++K +KI+ ++SD++ + + D + N DS
Sbjct: 537 IQQHKQKNSKIFQTGNESDDEESDNDDSDDSDSNNSDS 574
Score = 42 (19.8 bits), Expect = 1.4e-27, Sum P(3) = 1.4e-27
Identities = 17/59 (28%), Positives = 23/59 (38%)
Query: 510 FLNQKKGKMVPVKPVLDNAEKEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKAD 568
F N K K VK K+DKL+ ++ F N D E D +D +D
Sbjct: 512 FSNMKMDKERGVKRTKKEQIKQDKLIQQHKQKNSKIFQTGNESDD--EESDNDDSDDSD 568
Score = 40 (19.1 bits), Expect = 7.8e-29, Sum P(3) = 7.8e-29
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 702 DSDSDNDNDERKQNKD 717
DSDS+N + E + K+
Sbjct: 566 DSDSNNSDSETDEEKE 581
Score = 38 (18.4 bits), Expect = 1.3e-28, Sum P(3) = 1.3e-28
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 702 DSDSDNDNDERKQNKD-DNGPN 722
DS++D + + KQ K+ + PN
Sbjct: 573 DSETDEEKEIEKQIKEATSNPN 594
>CGD|CAL0000117 [details] [associations]
symbol:DBP7 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
CGD:CAL0000117 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
EMBL:AP006852 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 EMBL:AACQ01000156
RefSeq:XP_712474.1 RefSeq:XP_888745.1 ProteinModelPortal:Q59S50
STRING:Q59S50 GeneID:3645903 GeneID:3704147 KEGG:cal:CaO19.6902
KEGG:cal:CaO19_6902 KO:K14806 Uniprot:Q59S50
Length = 727
Score = 345 (126.5 bits), Expect = 3.7e-44, Sum P(4) = 3.7e-44
Identities = 89/241 (36%), Positives = 135/241 (56%)
Query: 65 STRFDQLPISKKTKSGLKD-AGFVKMTDIQRASLPHSLCGR-DILGAAKTGSGKTLAFVI 122
+T F L +++K L D F+ T IQ+ +P + D+ A+TGSGKTLAFV+
Sbjct: 134 ATNFSGLGLNEKLSIHLTDHLRFMHPTKIQQLVIPSLISTENDLFVKAQTGSGKTLAFVL 193
Query: 123 PVLEKLYKE---RWGPEDGVGSIIISPTRELADQLFDVLKAVGK-HHNFSAGLLIGGRRD 178
P+ KL +E + E G+ +II++PTRELA Q++ VL+ + + HH G++IGG +
Sbjct: 194 PIFHKLMRENKFKINRESGLFAIILTPTRELATQIYGVLETLTRCHHWIVPGIVIGGEKK 253
Query: 179 VDMEKEHVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAI 237
EK + + NILV TPGRL H++ T D SQL+ L+LDE D+++++GF+ + I
Sbjct: 254 KS-EKARLRKGCNILVATPGRLADHLENTKTLDISQLRWLVLDEGDKLMELGFEDTIAQI 312
Query: 238 VSQ----------------LPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTA 281
++ LP R L SAT +V+ L + LKDP+ +SV SV
Sbjct: 313 TAKIDSNSKIADTAEKWQGLPSRRINMLCSATLHSNVKKLGSIVLKDPEMISVETASVAG 372
Query: 282 T 282
T
Sbjct: 373 T 373
Score = 147 (56.8 bits), Expect = 3.7e-44, Sum P(4) = 3.7e-44
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 343 LYGRMKQDRRMAIYAQFCEKRS----VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYI 398
L+G + Q R + F + + +LFCTDVASRGLD + V++ D P + ++
Sbjct: 487 LHGSLSQQTRASTLQSFVKDNNSYNKILFCTDVASRGLDLPNVAN-VIEYDPPFTIDDHL 545
Query: 399 HRVGRTARYNSGGRSVLFLTP 419
HR+GR+AR + G + LFL P
Sbjct: 546 HRIGRSARLGNEGNATLFLLP 566
Score = 70 (29.7 bits), Expect = 3.7e-44, Sum P(4) = 3.7e-44
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 466 AQKAFITYLRS--VHIQKDKEVFDVTKLSIDEFSASLGLPMTPK 507
A +AF +++R+ H+ ++E F+V L + + S GL TPK
Sbjct: 640 AVRAFTSHIRAYATHLSSEREFFNVKLLHLGHLAKSFGLRETPK 683
Score = 60 (26.2 bits), Expect = 3.7e-44, Sum P(4) = 3.7e-44
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 278 SVTAT-PNRLQQTAMIVPLEQKL---DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKK 333
+ T+T P++L Q ++VP + +L D L I H + +VF + V + F+ F +
Sbjct: 382 TTTSTAPDQLIQNVVVVPPKLRLVTLDALLLKISKHSAERTIVFFSCSDSVDFHFDVFTR 441
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 467 (169.5 bits), Expect = 4.1e-44, P = 4.1e-44
Identities = 122/381 (32%), Positives = 199/381 (52%)
Query: 69 DQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKL 128
D + +S +K G+ +T IQ+ ++P G D+L +A+TG+GKT AF +P+L+ +
Sbjct: 4 DSIGLSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILDAI 63
Query: 129 YK------------------ERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAG 170
K E+ + ++I++PTRELA+Q+ D +K ++ +G
Sbjct: 64 AKANHAAKSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLPIKSG 123
Query: 171 LLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGF 230
++ GG + K L++LV TPGRLL+H+ N D SQ++ L+LDEADR+LD+GF
Sbjct: 124 VVYGGGKMASQTKMLKQGLDVLVATPGRLLEHL-ALRNVDLSQVKFLVLDEADRMLDMGF 182
Query: 231 KKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTA 290
+ ++ + QT +FSAT + V+ LA LK P+ +SV +E+ T+ +++Q
Sbjct: 183 LTDIEKLLLAVKHKHQTLMFSATFSDRVKSLANQLLKSPKTISVSKENTTS--GKIKQAV 240
Query: 291 MIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQD 350
V E+K ++L I + ++LVF + + + + K GI +G Q
Sbjct: 241 YWVTEERKRELLSELIGVNNWQQVLVFAGTKESANTLAKELKL--DGIKAALCHGDKTQG 298
Query: 351 RRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNS 409
R QF E K VL TDVA+RGLD +VV P Y+HRVGRT R
Sbjct: 299 ARNKALEQFSEGKVRVLVATDVAARGLDIPDLA-FVVNFHLPFLPEDYVHRVGRTGRAGK 357
Query: 410 GGRSVLFLTPTEMKMLEKLRE 430
G ++ ++P + + LE + +
Sbjct: 358 SGTAISLVSPKDERFLENIEQ 378
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 467 (169.5 bits), Expect = 4.1e-44, P = 4.1e-44
Identities = 128/377 (33%), Positives = 198/377 (52%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F++ P+ + L F K T IQ S P ++ GRDI+ AKTGSGKTLAF++P L
Sbjct: 132 FNEAPLPGQIHE-LLYGKFQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVH 190
Query: 128 LYKERWGPE-DGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGL--LIGGRRDVDMEKE 184
+ K+ +G +++ PTRELA Q+ +V ++ H+ + L GG ++
Sbjct: 191 ITKQAHRQRGEGPAVLVLLPTRELAQQVQEV--SIDFCHSLGLKMTCLFGGASKGPQARD 248
Query: 185 HVNELNILVCTPGRLLQHMDE-TPNFD-CSQLQILILDEADRILDVGFKKALNAIVSQLP 242
++I+V TPGRLL +D T N CS L +LDEADR+LD+GF+ + I+ Q+
Sbjct: 249 LERGVDIVVATPGRLLDFLDNGTTNMKKCSYL---VLDEADRMLDMGFEPQIKKIIGQIR 305
Query: 243 KHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP--LEQKLD 300
RQT +FSAT K V+ LA KD +L+V + A N Q ++ + KL
Sbjct: 306 PDRQTLMFSATWPKEVRALASDFQKDAAFLNVGSLELAANHNITQVVDILEEHAKQAKLM 365
Query: 301 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF- 359
L + I K ++F+ + ++ + A + R G P +C++G Q R + +F
Sbjct: 366 ELLNHIMNQKECKTIIFVETKRKADELTRAMR--RDGWPTLCIHGDKNQGERDWVLQEFK 423
Query: 360 CEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTP 419
K ++ TDVA+RGLD + + +V+ D P + Y+HR+GRT R + G + F T
Sbjct: 424 AGKTPIMLATDVAARGLDVDD-IKFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFTH 482
Query: 420 TEMK----MLEKLREAK 432
T +L+ L EAK
Sbjct: 483 TNASKAKDLLKVLDEAK 499
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 477 (173.0 bits), Expect = 6.6e-44, P = 6.6e-44
Identities = 125/370 (33%), Positives = 190/370 (51%)
Query: 66 TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVL 125
T F Q + L F + T IQ P +L GRD++G A+TGSGKTLA+++P +
Sbjct: 95 TNFHQAQFPQYVMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAI 154
Query: 126 EKL----YKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDM 181
+ Y ER G DG ++++PTRELA Q+ V GK + + GG
Sbjct: 155 VHINHQPYLER-G--DGPICLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQ 211
Query: 182 EKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 241
++ + I + TPGRL+ + E + + L+LDEADR+LD+GF+ + IV Q+
Sbjct: 212 IRDLERGVEICIATPGRLIDFL-EVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI 270
Query: 242 PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ--KL 299
RQT ++SAT K V+ LA L+D +++ ++A N LQ + + E+ KL
Sbjct: 271 RPDRQTLMWSATWPKEVRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKL 330
Query: 300 DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF 359
L I A +K ++F+ + K+ + + R G P MC++G Q R + +F
Sbjct: 331 IQLMEEIMAEKENKTIIFVETKKRCDELTRRMR--RDGWPAMCIHGDKSQPERDWVLTEF 388
Query: 360 CE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 418
K +L TDVASRGLD V +V+ D P Y+HR+GRTAR + G + F T
Sbjct: 389 RSGKAPILIATDVASRGLDVED-VKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFT 447
Query: 419 PTEMKMLEKL 428
P ++ L
Sbjct: 448 PGNLRQARDL 457
>TIGR_CMR|CPS_4097 [details] [associations]
symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
Uniprot:Q47WS0
Length = 430
Score = 465 (168.7 bits), Expect = 7.0e-44, P = 7.0e-44
Identities = 121/369 (32%), Positives = 198/369 (53%)
Query: 65 STRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPV 124
S F+Q + + + + G+ K T IQ +P ++ G+D+L +A TG+GKT AF++P+
Sbjct: 12 SLMFEQFDLDSELLASINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPI 71
Query: 125 LEKLYK-ERWGPEDGVGSIII-SPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDME 182
+ L R P G ++I +PTRELA Q+ + + + + G++ GG
Sbjct: 72 AQHLLDYPRTKP--GFPRVLILTPTRELAIQIGEDSEQLTELTKIKTGVITGGVNYGSHA 129
Query: 183 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP 242
+ +ILV TPGRLL+++ E FD +++IL+LDEADR+LD+GF + +N IV++
Sbjct: 130 DILTSTTDILVATPGRLLEYI-ENEQFDAREIEILVLDEADRMLDLGFSETINRIVAEAR 188
Query: 243 KHRQTFLFSAT-QTKSVQDLARLSLKDPQYL-SVHEESVTATPNRLQQTAMIVPLEQKLD 300
+QT LFSAT ++ VQ A L +P +L S A + Q + KL+
Sbjct: 189 WRKQTMLFSATLESPGVQLFAEEVLNEPVFLESKPSRKEKAVIH--QWLHLADDANHKLN 246
Query: 301 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFC 360
+L + +K + +VF + V+Y+ + K +P + L G+M QD+R +F
Sbjct: 247 LLVNTLKQEGVERTVVFANKRETVQYL--SGKLYAEELPCVWLEGKMPQDKRNKAIERFK 304
Query: 361 EKR-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTP 419
+ VL TDVA+RGLD + + V+ D P V YIHR+GRT R G ++ +
Sbjct: 305 KGEVKVLVATDVAARGLDIDD-ISHVINFDMPRKVDIYIHRIGRTGRAGKKGTAISLVEA 363
Query: 420 TEMKMLEKL 428
+M ++ K+
Sbjct: 364 HDMGVIGKI 372
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 464 (168.4 bits), Expect = 9.3e-44, P = 9.3e-44
Identities = 122/402 (30%), Positives = 210/402 (52%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F QL + + + G+ T IQ ++P L G+++L AA+TG+GKT +FV+P+L +
Sbjct: 3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
V SII++PTRELA Q+ + K+ +A + GG +K +
Sbjct: 63 FADAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKRLIE 122
Query: 188 ELNILVCTPGRLLQ-HMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246
+++LV TPGRLL + FD ++ +L+LDEADR+LD+GF + +N I+ +LP+ RQ
Sbjct: 123 GVDLLVATPGRLLDMYTQRAIRFD--EVSVLVLDEADRMLDMGFIEDINNIIEKLPEQRQ 180
Query: 247 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFI 306
LFSAT +K V+ LA+ ++ D + + ++ +T ++ Q V ++K +L I
Sbjct: 181 NLLFSATLSKQVKALAKTAIPDAIEIEISRKNAAST--QIDQWLTTVDKDRKSALLSHLI 238
Query: 307 KAHLNSKILVFL-TSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-CEKRS 364
K + ++ L+F+ T K V + K+ GI + Q R + F K
Sbjct: 239 KENNWAQALIFIQTKHGAAKLVSQLEKR---GIVAEAFHSGRSQAIREQLLIDFKAGKVP 295
Query: 365 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM 424
L T V SRG+D + A++ V+ D P++ YIHR+GRT R + G ++ F++ + +
Sbjct: 296 FLVATGVVSRGIDID-ALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRN 354
Query: 425 LEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRA 466
L + E ++ + N + +P + ++L P R+
Sbjct: 355 LCAI-ERRLGHIIERKNIEGFEPKKAVPISILDFVPKSASRS 395
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 464 (168.4 bits), Expect = 9.3e-44, P = 9.3e-44
Identities = 117/362 (32%), Positives = 193/362 (53%)
Query: 79 SGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDG 138
+G+ AG+ T IQ ++P + GRD++G A+TG+GKT AF +P+L +L + G
Sbjct: 14 TGIAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPILHRLQQ---GERGR 70
Query: 139 VGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNE-LNILVCTPG 197
V +++I+PTRELA+Q+ D +G+ + + GG V+ + + + ++V PG
Sbjct: 71 VRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGV-GVNPQVQKLKAGAEVVVACPG 129
Query: 198 RLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKS 257
RLL H+ + D S+L++L+LDEAD++ D+GF + ++ LP RQT LFSAT
Sbjct: 130 RLLDHIAQG-TIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPPRRQTLLFSATMPID 188
Query: 258 VQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ--KLDMLWSFIKAHLNSKIL 315
++ LA+ L DP + V T P + + P+EQ K +L ++ +L
Sbjct: 189 IRTLAQDILVDPVTVQVG----TVAP-AVTVAHALYPVEQHLKTPLLLELLRHTDTESVL 243
Query: 316 VFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVLFCTDVASR 374
+F + + K + E +K G L G + Q+RR A F + +L TD+A+R
Sbjct: 244 IFTRTKHRAKRLGEQLEKA--GYRAASLQGNLSQNRRQAALDGFRDGTFQILVATDIAAR 301
Query: 375 GLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL-REAKI 433
G+D ++ V V+ D P+ +YIHR+GRT R G + +T + M+ + R
Sbjct: 302 GIDVSQ-VSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDDGAMVRAIERSLGA 360
Query: 434 PI 435
PI
Sbjct: 361 PI 362
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 464 (168.4 bits), Expect = 9.3e-44, P = 9.3e-44
Identities = 122/402 (30%), Positives = 210/402 (52%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F QL + + + G+ T IQ ++P L G+++L AA+TG+GKT +FV+P+L +
Sbjct: 3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
V SII++PTRELA Q+ + K+ +A + GG +K +
Sbjct: 63 FADAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKRLIE 122
Query: 188 ELNILVCTPGRLLQ-HMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246
+++LV TPGRLL + FD ++ +L+LDEADR+LD+GF + +N I+ +LP+ RQ
Sbjct: 123 GVDLLVATPGRLLDMYTQRAIRFD--EVSVLVLDEADRMLDMGFIEDINNIIEKLPEQRQ 180
Query: 247 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFI 306
LFSAT +K V+ LA+ ++ D + + ++ +T ++ Q V ++K +L I
Sbjct: 181 NLLFSATLSKQVKALAKTAIPDAIEIEISRKNAAST--QIDQWLTTVDKDRKSALLSHLI 238
Query: 307 KAHLNSKILVFL-TSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-CEKRS 364
K + ++ L+F+ T K V + K+ GI + Q R + F K
Sbjct: 239 KENNWAQALIFIQTKHGAAKLVSQLEKR---GIVAEAFHSGRSQAIREQLLIDFKAGKVP 295
Query: 365 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM 424
L T V SRG+D + A++ V+ D P++ YIHR+GRT R + G ++ F++ + +
Sbjct: 296 FLVATGVVSRGIDID-ALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRN 354
Query: 425 LEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRA 466
L + E ++ + N + +P + ++L P R+
Sbjct: 355 LCAI-ERRLGHIIERKNIEGFEPKKAVPISILDFVPKSASRS 395
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 463 (168.0 bits), Expect = 1.2e-43, P = 1.2e-43
Identities = 119/370 (32%), Positives = 204/370 (55%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F + + ++ + + T+IQ+ S+P L D++ A+TG+GKT AF +P+L++
Sbjct: 7 FSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQ 66
Query: 128 LYK-ERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV 186
L + PE + +++++PTRELA Q+ G+ + + G+ GG V +K+ +
Sbjct: 67 LISVQPCKPE--LRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGG---VSTKKQ-I 120
Query: 187 NEL----NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP 242
+EL +IL+ TPGRLL + T + S ++ L+ DEADR+LD+GFK+ ++ I LP
Sbjct: 121 SELKVGVDILIATPGRLLDLL-RTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLP 179
Query: 243 KHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDML 302
K +QT LFSAT + +++ L +P+ + + E++ A + ++Q V ++K + L
Sbjct: 180 KTKQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAA--DDVEQLVYGVDADRKRE-L 236
Query: 303 WSFIKAHLNSK-ILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 361
SF+ N K +LVF T KQ A + + G+ + ++G Q R +F E
Sbjct: 237 TSFLIGSRNWKQVLVF-TRTKQCADDL-AKEMTKDGVKSLAIHGDKSQGAREKALHEFKE 294
Query: 362 -KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 420
K L TDVA+RG+D K + V+ + P + Y+HR+GRTAR + G +V ++P
Sbjct: 295 GKVRALIATDVAARGIDI-KGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPG 353
Query: 421 EMKMLEKLRE 430
E +L + E
Sbjct: 354 EEWLLTAIEE 363
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 463 (168.0 bits), Expect = 1.2e-43, P = 1.2e-43
Identities = 120/374 (32%), Positives = 195/374 (52%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F +L I + L + G+V T +Q A++P L GRD+L A TGSGKT AF +P+L++
Sbjct: 11 FAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQR 70
Query: 128 LYKERWGPEDG--VGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIG-GRRDVDMEKE 184
L + + + V +++ PTRELA Q+ D + H N ++ G V+++ +
Sbjct: 71 LSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQ 130
Query: 185 HVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPK 243
+ ++LV TPGRLL + +Q+ +LDEADR+L +GF + L +++ LP+
Sbjct: 131 SLRAGADVLVATPGRLLDLLASNA-LKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPR 189
Query: 244 HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLW 303
+QT LFSAT + V+ L L P L H +S + ++Q + V EQK +L
Sbjct: 190 QKQTLLFSATFPEEVRALTTKLLHQP--LEYHLQS--EQESTIEQRVITVNREQKTALLA 245
Query: 304 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR 363
IK H S+ L+F+++ ++ + K GI +G Q R + F
Sbjct: 246 HLIKQHQWSQALIFVSAKNTCNHLAQKLSKR--GISAEVFHGDKAQGARTRVLDGFKNGE 303
Query: 364 -SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 422
SVL TD+A+RG+D +K + V+ D P A Y+HR+GR+ R G +V ++ E
Sbjct: 304 ISVLIATDIAARGIDIDK-LPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEY 362
Query: 423 K---MLEKLREAKI 433
++EK + K+
Sbjct: 363 HHFGVIEKKNKIKL 376
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 463 (168.0 bits), Expect = 1.2e-43, P = 1.2e-43
Identities = 119/370 (32%), Positives = 204/370 (55%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F + + ++ + + T+IQ+ S+P L D++ A+TG+GKT AF +P+L++
Sbjct: 7 FSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQ 66
Query: 128 LYK-ERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV 186
L + PE + +++++PTRELA Q+ G+ + + G+ GG V +K+ +
Sbjct: 67 LISVQPCKPE--LRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGG---VSTKKQ-I 120
Query: 187 NEL----NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP 242
+EL +IL+ TPGRLL + T + S ++ L+ DEADR+LD+GFK+ ++ I LP
Sbjct: 121 SELKVGVDILIATPGRLLDLL-RTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLP 179
Query: 243 KHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDML 302
K +QT LFSAT + +++ L +P+ + + E++ A + ++Q V ++K + L
Sbjct: 180 KTKQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAA--DDVEQLVYGVDADRKRE-L 236
Query: 303 WSFIKAHLNSK-ILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 361
SF+ N K +LVF T KQ A + + G+ + ++G Q R +F E
Sbjct: 237 TSFLIGSRNWKQVLVF-TRTKQCADDL-AKEMTKDGVKSLAIHGDKSQGAREKALHEFKE 294
Query: 362 -KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 420
K L TDVA+RG+D K + V+ + P + Y+HR+GRTAR + G +V ++P
Sbjct: 295 GKVRALIATDVAARGIDI-KGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPG 353
Query: 421 EMKMLEKLRE 430
E +L + E
Sbjct: 354 EEWLLTAIEE 363
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 463 (168.0 bits), Expect = 1.2e-43, P = 1.2e-43
Identities = 116/352 (32%), Positives = 188/352 (53%)
Query: 85 GFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPE-DGVGSII 143
G+ + T IQ+ +P + G D+LG A+TG+GKT AF +P++ K + + + S+I
Sbjct: 21 GYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINKFGRNKIDIKAKSTRSLI 80
Query: 144 ISPTRELADQLFDVLKAVGKHHNFSAGLLIGG-RRDVDMEKEHVNELNILVCTPGRLLQH 202
++PTRELA Q+ + ++ GG R ++ + L+ILV TPGRLL
Sbjct: 81 LTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVDSIELG-LDILVATPGRLLD- 138
Query: 203 MDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLA 262
+ ET + + L++ +LDEAD +LD+GF K + +I+S+LPK RQT LFSAT ++ LA
Sbjct: 139 LIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKSRQTLLFSATMPAEIEILA 198
Query: 263 RLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCK 322
L DP + + E+VT + + Q+ + K+ +L++ + K+L+F CK
Sbjct: 199 EAILTDPTKIQITAETVTI--DLVNQSVYHLDKSNKVPLLFNILTKADYEKVLIF---CK 253
Query: 323 QVKYVFEAFKKL--RPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVLFCTDVASRGLDFN 379
KY + K + I L+ Q R F + VL TDVA+RG+D +
Sbjct: 254 -TKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLRVLVATDVAARGIDVD 312
Query: 380 KAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA 431
+ V+ + PED +YIHR+GRTAR G ++ F +++ L + +
Sbjct: 313 N-ITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVENDIRQLTNIENS 363
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 463 (168.0 bits), Expect = 1.2e-43, P = 1.2e-43
Identities = 120/374 (32%), Positives = 195/374 (52%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F +L I + L + G+V T +Q A++P L GRD+L A TGSGKT AF +P+L++
Sbjct: 11 FAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQR 70
Query: 128 LYKERWGPEDG--VGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIG-GRRDVDMEKE 184
L + + + V +++ PTRELA Q+ D + H N ++ G V+++ +
Sbjct: 71 LSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQ 130
Query: 185 HVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPK 243
+ ++LV TPGRLL + +Q+ +LDEADR+L +GF + L +++ LP+
Sbjct: 131 SLRAGADVLVATPGRLLDLLASNA-LKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPR 189
Query: 244 HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLW 303
+QT LFSAT + V+ L L P L H +S + ++Q + V EQK +L
Sbjct: 190 QKQTLLFSATFPEEVRALTTKLLHQP--LEYHLQS--EQESTIEQRVITVNREQKTALLA 245
Query: 304 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR 363
IK H S+ L+F+++ ++ + K GI +G Q R + F
Sbjct: 246 HLIKQHQWSQALIFVSAKNTCNHLAQKLSKR--GISAEVFHGDKAQGARTRVLDGFKNGE 303
Query: 364 -SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 422
SVL TD+A+RG+D +K + V+ D P A Y+HR+GR+ R G +V ++ E
Sbjct: 304 ISVLIATDIAARGIDIDK-LPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEY 362
Query: 423 K---MLEKLREAKI 433
++EK + K+
Sbjct: 363 HHFGVIEKKNKIKL 376
>SGD|S000001894 [details] [associations]
symbol:SPB4 "Putative ATP-dependent RNA helicase"
species:4932 "Saccharomyces cerevisiae" [GO:0000027 "ribosomal
large subunit assembly" evidence=IMP] [GO:0030686 "90S preribosome"
evidence=IDA;IPI] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000470 "maturation of LSU-rRNA" evidence=IMP]
[GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001894
GO:GO:0005524 GO:GO:0005730 EMBL:D50617 EMBL:BK006940 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0030686
GO:GO:0006364 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268803 KO:K14809 GeneTree:ENSGT00550000074969
OMA:MDSSANI OrthoDB:EOG46MFT3 EMBL:X16147 PIR:S14942
RefSeq:NP_116654.1 ProteinModelPortal:P25808 SMR:P25808
DIP:DIP-5423N IntAct:P25808 MINT:MINT-525740 STRING:P25808
PaxDb:P25808 EnsemblFungi:YFL002C GeneID:850549 KEGG:sce:YFL002C
CYGD:YFL002c NextBio:966324 Genevestigator:P25808
GermOnline:YFL002C Uniprot:P25808
Length = 606
Score = 462 (167.7 bits), Expect = 1.6e-43, P = 1.6e-43
Identities = 151/545 (27%), Positives = 264/545 (48%)
Query: 78 KSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPED 137
++GL GF MT +Q +++P +D++ + TGSGKT AFVIPVLEK+ KE
Sbjct: 19 RTGLDVMGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVKEEANTSK 78
Query: 138 ----GVGSIIISPTRELADQLFDVLKAVGKHHN-----FSAGLLIGGR----RDVDMEKE 184
S+II+PTREL+ Q+ V+ + +H+ LL+G RD D+
Sbjct: 79 FKKAHFHSLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRD-DVSNF 137
Query: 185 HVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKH 244
N IL+ TPGR+L + + P S ++++DEADR+LD+ F K I+ LPK
Sbjct: 138 LRNRPQILIGTPGRVLDFL-QMPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPKQ 196
Query: 245 RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWS 304
R+T LFSAT + D+ + L++P ++V+ ++ P+ L+ +V +KL +L S
Sbjct: 197 RRTGLFSATMRSAGSDIFKTGLRNPVRITVNSKN--QAPSSLKLNYCVVNPAEKLQLLVS 254
Query: 305 FIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPG------IPLMCLYGRMKQDRRMAIYAQ 358
+ + K +V+ +C V Y + + L + + L+G+++ R
Sbjct: 255 ILNNYKFKKCIVYFPTCVSVSYFYSFIQYLGKRNILVNEVEIFSLHGKLQTSARTKTLTA 314
Query: 359 FCEK--RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLF 416
F + SVLF TDVA+RG+D VD V+Q+D P + ++HR GRT R N G+++ F
Sbjct: 315 FTDSLSNSVLFTTDVAARGIDIPD-VDLVIQLDPPTNTDMFMHRCGRTGRANRVGKAITF 373
Query: 417 LTP-TEMKMLEKLREAKIPIHFTKANTKRLQP-VSGLLAALLVKYPDMQHRAQKAFITYL 474
L E + ++ + + K + +++ D + KA++ ++
Sbjct: 374 LNEGREEDFIPFMQVKNVELEELDLEVKGITTNFYEDFRNWILEDRDRFDKGVKAYVAFI 433
Query: 475 RSVHIQKDKEVFDVTKLSIDEFSASLGL---PMTPKI-RFL-NQKKGKMVPVKPVLDNAE 529
+ +F + L + GL P P+I ++L +K+ + P ++D
Sbjct: 434 KYYSNHSATSIFRLQSLDYVGIAKLYGLFRLPRMPEITKYLATEKQEGIFPGNWLVDPPV 493
Query: 530 KEDKLMISREKLLPDNF-TEENVDRDILETKDIEDE-GKADLLEDVMRATRVKK-NKKLK 586
D+ +K + T +N+ I + K ++ E K +L T+ +K +K K
Sbjct: 494 NMDEYKYKDKKREKERQETLKNISL-INDKKKLKSELKKKNLAWSDKTLTKERKLERKEK 552
Query: 587 INVHR 591
+++ R
Sbjct: 553 MSLKR 557
>TAIR|locus:2032338 [details] [associations]
symbol:AT1G71280 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0008266
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AC016162
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268803 KO:K14809
IPI:IPI00539204 PIR:E96737 RefSeq:NP_177284.1 UniGene:At.70351
ProteinModelPortal:Q9FVV4 SMR:Q9FVV4 PRIDE:Q9FVV4
EnsemblPlants:AT1G71280.1 GeneID:843469 KEGG:ath:AT1G71280
GeneFarm:1442 TAIR:At1g71280 InParanoid:Q9FVV4 OMA:NDASIVC
PhylomeDB:Q9FVV4 ArrayExpress:Q9FVV4 Genevestigator:Q9FVV4
Uniprot:Q9FVV4
Length = 465
Score = 356 (130.4 bits), Expect = 2.7e-43, Sum P(3) = 2.7e-43
Identities = 90/211 (42%), Positives = 130/211 (61%)
Query: 67 RFDQL--PISKKTKSGLKDAGFVKMTDIQRASLPHSLCG-RDILGAAKTGSGKTLAFVIP 123
RF +L P+S+ L +GF T +Q ++P LC +D++ A TGSGKTLAF++P
Sbjct: 16 RFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPF-LCSHKDVVVDAATGSGKTLAFLLP 74
Query: 124 VLEKLYKER-WGPEDG-VGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDM 181
+E + + + P+ V +IISPTREL+ Q+ V +AV +F+ + + DM
Sbjct: 75 FIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAV--RLDFAKCREV----EADM 128
Query: 182 EKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 241
N+L+ TPGRL M D L+ILILDEADR+LD+GF+K +N I+S+L
Sbjct: 129 NTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRL 188
Query: 242 PKHRQTFLFSATQTKSVQDLARLSLKDPQYL 272
PK R+T LFSATQT++V DLA+ L++P YL
Sbjct: 189 PKQRRTGLFSATQTQAVADLAKAGLRNP-YL 218
Score = 112 (44.5 bits), Expect = 2.7e-43, Sum P(3) = 2.7e-43
Identities = 32/86 (37%), Positives = 42/86 (48%)
Query: 296 EQKLDMLWSFIKAHLNSKILVFLTSCKQVKY---VFEAFKKLRPGIPLMCLYGRMKQDRR 352
+QK L + + N K++VF +C V Y V L+ I +G+M Q R
Sbjct: 223 DQKSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVISKIPSLK-SISFFPTHGKMDQKGR 281
Query: 353 MAIYAQFCEKRS-VLFCTDVASRGLD 377
A F E S VL CTDVA+RGLD
Sbjct: 282 DTALASFTEASSGVLLCTDVAARGLD 307
Score = 82 (33.9 bits), Expect = 5.8e-38, Sum P(2) = 5.8e-38
Identities = 41/182 (22%), Positives = 81/182 (44%)
Query: 412 RSVLFLTPTEMKMLEKLREAKIPIHFTKANT---------KRLQPVSGL--LAALLVKYP 460
+S+ F PT KM +K R+ + FT+A++ R + G+ + +L +K
Sbjct: 265 KSISFF-PTHGKMDQKGRDTALA-SFTEASSGVLLCTDVAARGLDIPGIVYIRSLAIKDR 322
Query: 461 DMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVP 520
++ + KAF++++R+ + +F L I + + G+ P I + Q + +V
Sbjct: 323 EVLEKGLKAFVSFVRAYKEHQCSYIFSWKGLEIGKLAMGYGILSFPYISEVKQDRIGIVG 382
Query: 521 VKPVLDNAEKEDKLMI-SREKLLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRATRV 579
PV ++ K SREK N D+ E + + + ++D +A+R
Sbjct: 383 FTPVQGITFEDIKFKNKSREKQRQQNLLARK-DKLQQEKRGKRKKSSKEAVDDSNKASRK 441
Query: 580 KK 581
+K
Sbjct: 442 RK 443
Score = 39 (18.8 bits), Expect = 2.7e-43, Sum P(3) = 2.7e-43
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 690 ERGRRKKAKIYFDSDSDNDNDERK 713
+RG+RKK+ DS+ + +RK
Sbjct: 420 KRGKRKKSSKEAVDDSNKASRKRK 443
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 458 (166.3 bits), Expect = 4.5e-43, P = 4.5e-43
Identities = 107/365 (29%), Positives = 196/365 (53%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F L ++ + L + G+ + T IQ ++P L +D++ A+TG+GKT AF +P+L+
Sbjct: 3 FSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQL 62
Query: 128 LYKERWGPE--DGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEH 185
L + + ++++ PTRELA Q+ K + G+ GG ++ ++
Sbjct: 63 LMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGV-SIEAQQAV 121
Query: 186 VNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKH 244
N +++L+ TPGRLL H+ + + +QL L+ DEADR+LD+GF + A++ Q+P
Sbjct: 122 FNAGIDVLIATPGRLLDHLRQGA-LNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQ 180
Query: 245 RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWS 304
RQT LFSAT S+ ++ L+DP+ + V + + TA +++Q + ++K + +
Sbjct: 181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAA--QIEQRVYAIDSDRKTEFVSH 238
Query: 305 FIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR- 363
+++ ++L+F + + V + KL G+ +G + Q R + +F +
Sbjct: 239 LVRSKNWQQVLIFSRTKQGVDKLTAQLNKL--GVATQSFHGDLSQGAREKVLQEFKQGLV 296
Query: 364 SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 423
VL TDVA+RGLD + + +V+ + P YIHR+GRT R S G ++ + +
Sbjct: 297 QVLVATDVAARGLDIAE-LQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDAL 355
Query: 424 MLEKL 428
+LE++
Sbjct: 356 LLEEV 360
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 458 (166.3 bits), Expect = 4.5e-43, P = 4.5e-43
Identities = 107/365 (29%), Positives = 196/365 (53%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F L ++ + L + G+ + T IQ ++P L +D++ A+TG+GKT AF +P+L+
Sbjct: 3 FSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQL 62
Query: 128 LYKERWGPE--DGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEH 185
L + + ++++ PTRELA Q+ K + G+ GG ++ ++
Sbjct: 63 LMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGV-SIEAQQAV 121
Query: 186 VNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKH 244
N +++L+ TPGRLL H+ + + +QL L+ DEADR+LD+GF + A++ Q+P
Sbjct: 122 FNAGIDVLIATPGRLLDHLRQGA-LNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQ 180
Query: 245 RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWS 304
RQT LFSAT S+ ++ L+DP+ + V + + TA +++Q + ++K + +
Sbjct: 181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAA--QIEQRVYAIDSDRKTEFVSH 238
Query: 305 FIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR- 363
+++ ++L+F + + V + KL G+ +G + Q R + +F +
Sbjct: 239 LVRSKNWQQVLIFSRTKQGVDKLTAQLNKL--GVATQSFHGDLSQGAREKVLQEFKQGLV 296
Query: 364 SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 423
VL TDVA+RGLD + + +V+ + P YIHR+GRT R S G ++ + +
Sbjct: 297 QVLVATDVAARGLDIAE-LQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDAL 355
Query: 424 MLEKL 428
+LE++
Sbjct: 356 LLEEV 360
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 457 (165.9 bits), Expect = 5.9e-43, P = 5.9e-43
Identities = 120/367 (32%), Positives = 200/367 (54%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F +L + + D GF T IQ+ ++P L G +++G A TG+GKT A+++PVL++
Sbjct: 4 FKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQR 63
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
+ + G + V +I++PTRELA Q+ D + +GK+ A + GG+ ++ + +
Sbjct: 64 IQR---GKKAQV--LIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQA-IERQIRGLR 117
Query: 188 E-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246
+ + ++V TPGR+L H+ F ++++I+ILDEAD +LD+GF + AI++ L +Q
Sbjct: 118 QGVEVIVGTPGRILDHIGRK-TFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQ 176
Query: 247 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFI 306
T LFSAT ++ + + L Y +V T ++Q +P +K++ L S +
Sbjct: 177 TLLFSATLPAPIKTIIKKFLGG--YKTVKLVGREKTVPAIRQVYYELPETEKIEGLVSIL 234
Query: 307 KAHLNSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQF-CEKRS 364
+ L + +VF C+ K V E ++L G L+G M Q R F K
Sbjct: 235 NSELPIQAIVF---CRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTE 291
Query: 365 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM 424
+L TDVA+RGLD V V+ D P++ SYIHR+GRT R G+++ + E K+
Sbjct: 292 LLVATDVAARGLDIPD-VSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKL 350
Query: 425 LEKLREA 431
L+ + EA
Sbjct: 351 LKAIEEA 357
>UNIPROTKB|Q4K8U0 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A" species:220664
"Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
Uniprot:Q4K8U0
Length = 557
Score = 457 (165.9 bits), Expect = 5.9e-43, P = 5.9e-43
Identities = 115/361 (31%), Positives = 192/361 (53%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F L + + + G+ + + IQ+ S+P L G D++G A+TG+GKT AF +P+L +
Sbjct: 8 FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 67
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH-NFSAGLLIGGRRDVDMEKEHV 186
+ + P+ ++I++PTRELA Q+ + K + + GG K
Sbjct: 68 IDPSKREPQ----ALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIR 123
Query: 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246
N I+V TPGRL H+ + + L+LDEAD +L +GF L I +P+ RQ
Sbjct: 124 NGAQIVVATPGRLCDHLRRDEKV-LATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQ 182
Query: 247 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFI 306
T LFSAT +S++ +A LKDP+++ + +S T T ++Q ++V +QK + S +
Sbjct: 183 TVLFSATLPQSIRAIAERHLKDPKHVKI--QSKTQTVTAIEQAHLLVHADQKTSAVLSLL 240
Query: 307 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SV 365
+ +++F+ + KQ + + + G L G + Q++R + + R +
Sbjct: 241 EVEDFDALIMFVRT-KQATLDLASALEAK-GYKAAALNGDIAQNQRERVIDSLKDGRLDI 298
Query: 366 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 425
+ TDVA+RGLD + + V VD P D SY+HR+GRT R GR++L +TP E +ML
Sbjct: 299 VVATDVAARGLDVPR-ITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRML 357
Query: 426 E 426
+
Sbjct: 358 Q 358
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 457 (165.9 bits), Expect = 5.9e-43, P = 5.9e-43
Identities = 123/368 (33%), Positives = 196/368 (53%)
Query: 67 RFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLE 126
+F L + + L F + T+IQ+ ++P ++ GRD+L ++KTGSGKTLAFV+P+L
Sbjct: 6 QFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLH 65
Query: 127 KLYKER-WGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEH 185
K K + + +D G I++ PTRELA Q++ L+++ +++A L+ GG D K
Sbjct: 66 KSLKTKAFSAKDPRGLILV-PTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 124
Query: 186 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHR 245
+V TPGRL H+D F L+ L+LDEADR+LD+GF K L I KHR
Sbjct: 125 ARGPRFIVATPGRLADHLDHRSLF-LEGLETLVLDEADRMLDLGFAKELRRI-HNAAKHR 182
Query: 246 --QTFLFSATQTKS-VQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDML 302
QT +FSAT + V D+A L +P+ +++ S + Q + L+ K +L
Sbjct: 183 RRQTLMFSATLDHADVNDMAMELLNEPKRIAIGVGS-EEHKDITQHFYLCDHLDHKEALL 241
Query: 303 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK 362
+ ++++F + + E K + + + L G + Q +R I QF E+
Sbjct: 242 DRILADAEYRQVIIFTATRADTDRLTE--KLNQNNLKAVALSGNLNQTQRNTIMGQF-ER 298
Query: 363 R--SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 420
+L TDVASRGLD AV V+ D P+ Y+HRVGRT R + G ++ + P
Sbjct: 299 AVFKILVTTDVASRGLDI-PAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPK 357
Query: 421 EMKMLEKL 428
+ + +++
Sbjct: 358 DWESFKRV 365
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 457 (165.9 bits), Expect = 5.9e-43, P = 5.9e-43
Identities = 114/360 (31%), Positives = 196/360 (54%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F QL +S + G+ K T IQ ++P L GRD++ AA+TG+GKT +FV+P+LEK
Sbjct: 3 FSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEK 62
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
L + + + V ++I+ PTRELA Q+ + ++ GK + + GG + ++ ++
Sbjct: 63 LRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLID 122
Query: 188 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQT 247
+++LV TPGRL+ + + ++++++LDEADR+LD+GF +++N I+ LP Q
Sbjct: 123 GVDVLVATPGRLMDLYGQRAVY-FEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQF 181
Query: 248 FLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIK 307
LFSAT ++ V++LA+ +++DP +S+ A+ + + Q + V + K +L I
Sbjct: 182 LLFSATLSRKVRELAKTAVRDPHEISIAANQ--ASKSNISQWLITVDKDTKSALLSHLIN 239
Query: 308 AHLNSKILVFL-TSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSV 365
+ L+F+ T K V + K+ GI + Q R + F K
Sbjct: 240 EQQWDQALIFIETKHGAAKLVSQLEKR---GIHAEAFHSGRSQAIRAQLLEDFKSGKIKY 296
Query: 366 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 425
L T VA+RG+D ++ + VV D P Y+HR+GRT R + G ++ F++ K L
Sbjct: 297 LVATGVAARGIDIDQ-LSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNL 355
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 457 (165.9 bits), Expect = 5.9e-43, P = 5.9e-43
Identities = 120/367 (32%), Positives = 200/367 (54%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F +L + + D GF T IQ+ ++P L G +++G A TG+GKT A+++PVL++
Sbjct: 4 FKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQR 63
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
+ + G + V +I++PTRELA Q+ D + +GK+ A + GG+ ++ + +
Sbjct: 64 IQR---GKKAQV--LIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQA-IERQIRGLR 117
Query: 188 E-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246
+ + ++V TPGR+L H+ F ++++I+ILDEAD +LD+GF + AI++ L +Q
Sbjct: 118 QGVEVIVGTPGRILDHIGRK-TFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQ 176
Query: 247 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFI 306
T LFSAT ++ + + L Y +V T ++Q +P +K++ L S +
Sbjct: 177 TLLFSATLPAPIKTIIKKFLGG--YKTVKLVGREKTVPAIRQVYYELPETEKIEGLVSIL 234
Query: 307 KAHLNSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQF-CEKRS 364
+ L + +VF C+ K V E ++L G L+G M Q R F K
Sbjct: 235 NSELPIQAIVF---CRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTE 291
Query: 365 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM 424
+L TDVA+RGLD V V+ D P++ SYIHR+GRT R G+++ + E K+
Sbjct: 292 LLVATDVAARGLDIPD-VSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKL 350
Query: 425 LEKLREA 431
L+ + EA
Sbjct: 351 LKAIEEA 357
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 457 (165.9 bits), Expect = 5.9e-43, P = 5.9e-43
Identities = 121/389 (31%), Positives = 206/389 (52%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F L +S + + + G+ + IQ ++P L G+D++ AA+TG+GKT F +P+LE
Sbjct: 3 FSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLEL 62
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
L K +++++PTRELA Q+ + ++ GK+ + ++ GG V + + +N
Sbjct: 63 LAKGHKAKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGG---VPINPQ-IN 118
Query: 188 EL----NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPK 243
+L ++LV TPGRLL + + +QL+IL+LDEADR+LD+GF + + I++ LP
Sbjct: 119 KLRHGVDVLVATPGRLLDLVQQNA-VKFNQLEILVLDEADRMLDMGFIRDIKKILALLPA 177
Query: 244 HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLW 303
RQ +FSAT + +++LA+ + P +SV + AT ++Q V QK +L
Sbjct: 178 KRQNLMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATT--VKQWICPVDKTQKSALLI 235
Query: 304 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR 363
IK ++LVF + + ++ ++ I ++G Q R A F
Sbjct: 236 QLIKQENWQQVLVFSRTKHGANRLAKSL--IQAEISAAAIHGNKSQGARTKALADFKSGE 293
Query: 364 -SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 422
VL TD+A+RGLD ++ + VV D P Y+HR+GRT R + G++V ++ E+
Sbjct: 294 VRVLVATDIAARGLDIDQ-LPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEI 352
Query: 423 KMLEKLREAKIPIHFTKANTKRLQPVSGL 451
K+L+ + E I + + PV L
Sbjct: 353 KLLKDI-ERLINRVLERQEVEGFSPVHAL 380
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 457 (165.9 bits), Expect = 5.9e-43, P = 5.9e-43
Identities = 114/360 (31%), Positives = 196/360 (54%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F QL +S + G+ K T IQ ++P L GRD++ AA+TG+GKT +FV+P+LEK
Sbjct: 3 FSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEK 62
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
L + + + V ++I+ PTRELA Q+ + ++ GK + + GG + ++ ++
Sbjct: 63 LRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLID 122
Query: 188 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQT 247
+++LV TPGRL+ + + ++++++LDEADR+LD+GF +++N I+ LP Q
Sbjct: 123 GVDVLVATPGRLMDLYGQRAVY-FEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQF 181
Query: 248 FLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIK 307
LFSAT ++ V++LA+ +++DP +S+ A+ + + Q + V + K +L I
Sbjct: 182 LLFSATLSRKVRELAKTAVRDPHEISIAANQ--ASKSNISQWLITVDKDTKSALLSHLIN 239
Query: 308 AHLNSKILVFL-TSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSV 365
+ L+F+ T K V + K+ GI + Q R + F K
Sbjct: 240 EQQWDQALIFIETKHGAAKLVSQLEKR---GIHAEAFHSGRSQAIRAQLLEDFKSGKIKY 296
Query: 366 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 425
L T VA+RG+D ++ + VV D P Y+HR+GRT R + G ++ F++ K L
Sbjct: 297 LVATGVAARGIDIDQ-LSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNL 355
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 457 (165.9 bits), Expect = 5.9e-43, P = 5.9e-43
Identities = 123/368 (33%), Positives = 196/368 (53%)
Query: 67 RFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLE 126
+F L + + L F + T+IQ+ ++P ++ GRD+L ++KTGSGKTLAFV+P+L
Sbjct: 6 QFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLH 65
Query: 127 KLYKER-WGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEH 185
K K + + +D G I++ PTRELA Q++ L+++ +++A L+ GG D K
Sbjct: 66 KSLKTKAFSAKDPRGLILV-PTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 124
Query: 186 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHR 245
+V TPGRL H+D F L+ L+LDEADR+LD+GF K L I KHR
Sbjct: 125 ARGPRFIVATPGRLADHLDHRSLF-LEGLETLVLDEADRMLDLGFAKELRRI-HNAAKHR 182
Query: 246 --QTFLFSATQTKS-VQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDML 302
QT +FSAT + V D+A L +P+ +++ S + Q + L+ K +L
Sbjct: 183 RRQTLMFSATLDHADVNDMAMELLNEPKRIAIGVGS-EEHKDITQHFYLCDHLDHKEALL 241
Query: 303 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK 362
+ ++++F + + E K + + + L G + Q +R I QF E+
Sbjct: 242 DRILADAEYRQVIIFTATRADTDRLTE--KLNQNNLKAVALSGNLNQTQRNTIMGQF-ER 298
Query: 363 R--SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 420
+L TDVASRGLD AV V+ D P+ Y+HRVGRT R + G ++ + P
Sbjct: 299 AVFKILVTTDVASRGLDI-PAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPK 357
Query: 421 EMKMLEKL 428
+ + +++
Sbjct: 358 DWESFKRV 365
>WB|WBGene00022378 [details] [associations]
symbol:Y94H6A.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0040010 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:FO081810
GeneID:177054 KEGG:cel:CELE_Y94H6A.5 UCSC:Y94H6A.5a CTD:177054
NextBio:895136 RefSeq:NP_741347.2 ProteinModelPortal:Q688Z4
SMR:Q688Z4 STRING:Q688Z4 PRIDE:Q688Z4 EnsemblMetazoa:Y94H6A.5b
WormBase:Y94H6A.5b InParanoid:Q688Z4 ArrayExpress:Q688Z4
Uniprot:Q688Z4
Length = 871
Score = 477 (173.0 bits), Expect = 6.2e-43, P = 6.2e-43
Identities = 124/381 (32%), Positives = 203/381 (53%)
Query: 53 RIGEDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKT 112
+I ++ K G + Q+ + ++ GF + T IQR ++P + G+D++ ++T
Sbjct: 13 QINQNRKHKKAGG--WQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRT 70
Query: 113 GSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLL 172
GSGKT AFVIP+L+KL K R G+ ++++SPTRELA Q F V+K +G+ L
Sbjct: 71 GSGKTAAFVIPMLQKL-KRR--DTTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACL 127
Query: 173 IGGRR-DVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFK 231
+GG + + H N +IL+ TPGRLL H+ + S +Q ++ DEADR+ ++GF+
Sbjct: 128 VGGDQIEEQFSTIHENP-DILLATPGRLL-HVIVEMDLRLSYVQYVVFDEADRLFEMGFQ 185
Query: 232 KALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVH-EESVTATPNRLQQTA 290
L + ++P+ RQT LFSAT K + D A+ L DP + + +E V+ ++L
Sbjct: 186 DQLTETLKRIPESRQTLLFSATLPKMLVDFAKAGLTDPMLVRLDVDEKVS---DKLSMVF 242
Query: 291 MIVPLEQKLDMLWSFIKA--HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMK 348
+ ++KL L + N + +VF + K V+YV R GI +Y ++
Sbjct: 243 CMCRPDEKLFALLHLCRRMDRENKQTVVFCATMKHVEYVVGILH--RAGIDCSFVYSQLD 300
Query: 349 QDRRMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARY 407
R +F EK++ +L TDVA+RG+D +D V+ + P ++HRVGR AR
Sbjct: 301 ATARKMNIQKFHEKQNNILVVTDVAARGVDI-PLLDTVINLHFPPKAKLFVHRVGRVARA 359
Query: 408 NSGGRSVLFLTPTEMKMLEKL 428
G ++ + E+ L L
Sbjct: 360 GRSGTAISLIANDELPYLTDL 380
>FB|FBgn0027602 [details] [associations]
symbol:CG8611 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806
GeneTree:ENSGT00550000075041 EMBL:AF145609 RefSeq:NP_573214.1
RefSeq:NP_788922.1 UniGene:Dm.3172 ProteinModelPortal:Q86B47
SMR:Q86B47 IntAct:Q86B47 MINT:MINT-776497 PaxDb:Q86B47 PRIDE:Q86B47
EnsemblMetazoa:FBtr0074440 GeneID:32725 KEGG:dme:Dmel_CG8611
UCSC:CG8611-RB FlyBase:FBgn0027602 InParanoid:Q86B47 OMA:YTERDPE
OrthoDB:EOG47SQVT PhylomeDB:Q86B47 GenomeRNAi:32725 NextBio:780053
Bgee:Q86B47 Uniprot:Q86B47
Length = 975
Score = 350 (128.3 bits), Expect = 6.8e-43, Sum P(3) = 6.8e-43
Identities = 85/236 (36%), Positives = 142/236 (60%)
Query: 62 YVGSTRFDQLPISKKTKSGLKDAGFVK-MTDIQRASLPHSLCGRDILGAAKTGSGKTLAF 120
+ GS + L + L+D ++ +T +Q+ ++P L G+D+L ++TGSGKTLA+
Sbjct: 324 FTGS-KISTLGLHPHAVKNLEDLLSIRELTSVQQKTIPEVLQGKDVLVRSQTGSGKTLAY 382
Query: 121 VIPVLEKLYKE--RWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSA-GLLIGGRR 177
+P++E L K+ R +DGV +++I PTREL Q +++++ + K + + G L+GG
Sbjct: 383 ALPLVELLQKQQPRIQRKDGVLALVIVPTRELVMQTYELIQKLVKPYTWIVPGSLLGGES 442
Query: 178 DVDMEKEHVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNA 236
EK + + +NIL+ TPGRL+ H+ T +F ++LQ LILDEADR+L++G+++ +
Sbjct: 443 RKS-EKARLRKGINILIGTPGRLVDHLLHTASFKLTKLQFLILDEADRLLELGYERDVKQ 501
Query: 237 IVSQLPKHR-----------QTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTA 281
+V + K R Q L SAT T VQ LA L+LK+P Y+ +E+ +A
Sbjct: 502 LVEAIDKQRAECEDKELPQLQRMLLSATLTSQVQQLAGLTLKNPLYIDNSDEAASA 557
Score = 179 (68.1 bits), Expect = 6.8e-43, Sum P(3) = 6.8e-43
Identities = 42/103 (40%), Positives = 58/103 (56%)
Query: 334 LRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPE 392
L G+ L+G M Q R ++ F + S VL TDV RG+D + VVQ P+
Sbjct: 675 LLQGLRFFKLHGSMTQTERQGVFRGFRDCASCVLLATDVVGRGIDVPD-IKLVVQYTPPQ 733
Query: 393 DVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKIPI 435
A ++HRVGRTAR GR+VLFLTP+E + + L + +I I
Sbjct: 734 TTADFVHRVGRTARAGRKGRAVLFLTPSEAQFVRHLEKKRIRI 776
Score = 51 (23.0 bits), Expect = 6.8e-43, Sum P(3) = 6.8e-43
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 272 LSVHEESVTAT---PNRLQQTAMIVPLEQKLDMLWSFIKAHLNS-----KILVFLTSCKQ 323
L ++E VT P LQ + ++VP + +L L S + +++ K +VF+++ +
Sbjct: 580 LGEYQEDVTGVLSIPENLQLSYVVVPPKLRLVALSSLLAKEVDASPKQFKAIVFMSTTEM 639
Query: 324 VKY 326
V +
Sbjct: 640 VNF 642
Score = 41 (19.5 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 544 DNFTEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINVHRPLGTRLV 598
D + +E ++ +LE D+G + EDV + +N +L V P RLV
Sbjct: 563 DGYQKETIEA-LLEV----DDGLGEYQEDVTGVLSIPENLQLSYVVVPPK-LRLV 611
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 434 (157.8 bits), Expect = 6.9e-43, Sum P(2) = 6.9e-43
Identities = 120/382 (31%), Positives = 194/382 (50%)
Query: 66 TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVL 125
T+F +L ++ K +++AG+ T IQ ++P +L GRD+LG A+TG+GKT +F +P++
Sbjct: 2 TKFSELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMI 61
Query: 126 EKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEH 185
L + R S+++ PTRELA Q+ + KH + LLIGG + +
Sbjct: 62 TLLARGR-ARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALI 120
Query: 186 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHR 245
+++L+ TPGRLL H E + +QI+++DEADR+LD+GF + I S P R
Sbjct: 121 DRGVDVLIATPGRLLDHF-ERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTR 179
Query: 246 QTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP-------LEQK 298
QT FSAT ++ + L P + V ++ TA+ ++Q ++ +K
Sbjct: 180 QTLFFSATMAPEIERITNTFLSAPARIEVARQA-TASET-IEQGVVLFKGSRRDREASEK 237
Query: 299 LDMLWSFIKAHLN--SKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIY 356
+L + I A + ++F V V ++ +K G ++G + Q +R
Sbjct: 238 RAVLRALIDAEGEKCTNAIIFCNRKTDVDIVAKSLQKY--GYDAAPIHGDLDQSQRTRTL 295
Query: 357 AQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVL 415
F E K +L +DVA+RGLD +V V D P Y+HR+GRT R G+++
Sbjct: 296 DGFREGKLRLLVASDVAARGLDV-PSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKAIT 354
Query: 416 FLTPTEMKML---EKLREAKIP 434
P + K L EKL + IP
Sbjct: 355 LCIPRDEKALDAIEKLIQKDIP 376
Score = 45 (20.9 bits), Expect = 6.9e-43, Sum P(2) = 6.9e-43
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 689 MERGRRKKAKIYFDSDS-DNDNDERKQNKDDNGPNI 723
++R K+ + ++D D ER+ KDD G +
Sbjct: 415 VKREADKRDPVKREADKRDRKGGERRDRKDDRGARV 450
Score = 38 (18.4 bits), Expect = 3.8e-42, Sum P(2) = 3.8e-42
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 522 KPVLDNAEKEDKLMISREKLLPDNFTEENVDRDILETKDIEDE 564
KP +A+K + + +K P + DR E +D +D+
Sbjct: 403 KPARSDADKREPVKREADKRDPVKREADKRDRKGGERRDRKDD 445
>TAIR|locus:2064844 [details] [associations]
symbol:AT2G40700 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0006312
"mitotic recombination" evidence=RCA] [GO:0006406 "mRNA export from
nucleus" evidence=RCA] [GO:0006606 "protein import into nucleus"
evidence=RCA] [GO:0006626 "protein targeting to mitochondrion"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] [GO:0009561 "megagametogenesis" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0042991 "transcription factor
import into nucleus" evidence=RCA] [GO:0051604 "protein maturation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806 HOGENOM:HOG000268799
EMBL:AJ010468 IPI:IPI00518934 PIR:G84832 PIR:T51746
RefSeq:NP_181602.1 UniGene:At.47 ProteinModelPortal:Q7XJN0
SMR:Q7XJN0 STRING:Q7XJN0 PaxDb:Q7XJN0 PRIDE:Q7XJN0
EnsemblPlants:AT2G40700.1 GeneID:818665 KEGG:ath:AT2G40700
GeneFarm:934 TAIR:At2g40700 InParanoid:Q7XJN0 OMA:HRFHWIV
PhylomeDB:Q7XJN0 ProtClustDB:CLSN2683635 Genevestigator:Q7XJN0
GermOnline:AT2G40700 Uniprot:Q7XJN0
Length = 609
Score = 298 (110.0 bits), Expect = 1.3e-42, Sum P(3) = 1.3e-42
Identities = 80/226 (35%), Positives = 121/226 (53%)
Query: 65 STRFDQLPISKKTKSGLKDA-GFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIP 123
S F L + K LK+ GF T +Q ++P L GRD+L A TG+GKT+A++ P
Sbjct: 28 SCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAP 87
Query: 124 VLEKL--YKERWGPEDGVGSIIISPTRELADQLFDVL-KAVGKHHNFSAGLLIGGRRDVD 180
++ L + + G +++I PTREL Q+++ L K + + H G ++GG +
Sbjct: 88 LIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAK 147
Query: 181 MEKEHVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVS 239
EK + + ++IL+ TPGRLL H+ T +F L+ +I DEAD IL++G+ K + I+
Sbjct: 148 -EKARLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQIIK 206
Query: 240 QL--------------PK--HRQTFLFSATQTKSVQDLARLSLKDP 269
L PK +Q L SAT V DLA+LSL DP
Sbjct: 207 LLGSGQNEQGEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLDDP 252
Score = 209 (78.6 bits), Expect = 1.3e-42, Sum P(3) = 1.3e-42
Identities = 42/89 (47%), Positives = 61/89 (68%)
Query: 343 LYGRMKQDRRMAIYAQF-CEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRV 401
L+G M+Q+ R + + F EK++VL TDVA+RGLDF K V ++Q DCP + Y+HRV
Sbjct: 379 LHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPK-VRCIIQYDCPGEATEYVHRV 437
Query: 402 GRTARYNSGGRSVLFLTPTEMKMLEKLRE 430
GRTAR G ++LFL P E+ L++L++
Sbjct: 438 GRTARIGEKGEALLFLQPIEIDYLKELKK 466
Score = 63 (27.2 bits), Expect = 1.3e-42, Sum P(3) = 1.3e-42
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 452 LAALLVKYPDMQHRAQKAFITYLR--SVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKI 508
L +L P M+ A+ AF++++R + H + K +F V KL + + S L P +
Sbjct: 511 LESLTYAEPKMKSLAKNAFVSWVRGYAAHKGELKSIFVVKKLHLGHVAKSFALREQPSL 569
>UNIPROTKB|P21693 [details] [associations]
symbol:dbpA species:83333 "Escherichia coli K-12"
[GO:0003724 "RNA helicase activity" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0033677 "DNA/RNA helicase
activity" evidence=IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IMP]
[GO:0034459 "ATP-dependent 3'-5' RNA helicase activity"
evidence=IDA] [GO:0019843 "rRNA binding" evidence=IDA] [GO:0043531
"ADP binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0043531
GO:GO:0019843 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:X52647 PIR:B64884 RefSeq:NP_415859.1 RefSeq:YP_489613.1
ProteinModelPortal:P21693 SMR:P21693 IntAct:P21693 PRIDE:P21693
EnsemblBacteria:EBESCT00000004879 EnsemblBacteria:EBESCT00000014318
GeneID:12933991 GeneID:947153 KEGG:ecj:Y75_p1320 KEGG:eco:b1343
PATRIC:32117966 EchoBASE:EB0206 EcoGene:EG10210
HOGENOM:HOG000268809 KO:K05591 OMA:HIDPARF ProtClustDB:PRK11776
BioCyc:EcoCyc:EG10210-MONOMER BioCyc:ECOL316407:JW1337-MONOMER
BioCyc:MetaCyc:EG10210-MONOMER Genevestigator:P21693 GO:GO:0034459
GO:GO:0033677 InterPro:IPR005580 Pfam:PF03880 Uniprot:P21693
Length = 457
Score = 453 (164.5 bits), Expect = 1.7e-42, P = 1.7e-42
Identities = 116/360 (32%), Positives = 199/360 (55%)
Query: 66 TRFDQLPISKKTK-SGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPV 124
T F L + + + L + G++ MT +Q A+LP L G+D+ AKTGSGKT AF + +
Sbjct: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61
Query: 125 LEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKE 184
L+++ + + ++++ PTRELADQ+ L+ + + + L + G + M+++
Sbjct: 62 LQQIDASLFQTQ----ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117
Query: 185 HVNEL-NILVCTPGRLLQHMDE-TPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP 242
+ +I+V TPGRLL H+ + T + D L L++DEADR+LD+GF A++ ++ P
Sbjct: 118 SLQHAPHIIVATPGRLLDHLQKGTVSLDA--LNTLVMDEADRMLDMGFSDAIDDVIRFAP 175
Query: 243 KHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDML 302
RQT LFSAT +++ ++ +DP L++ +S A P ++Q + K+ +L
Sbjct: 176 ASRQTLLFSATWPEAIAAISGRVQRDP--LAIEIDSTDALPP-IEQQFYETSSKGKIPLL 232
Query: 303 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK 362
+ H S +VF + K + V +A ++ G + L+G ++Q R +F
Sbjct: 233 QRLLSLHQPSSCVVFCNTKKDCQAVCDALNEV--GQSALSLHGDLEQRDRDQTLVRFANG 290
Query: 363 RS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 421
+ VL TDVA+RGLD K+++ VV + D ++HR+GRTAR + G ++ F P E
Sbjct: 291 SARVLVATDVAARGLDI-KSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 453 (164.5 bits), Expect = 1.7e-42, P = 1.7e-42
Identities = 110/363 (30%), Positives = 189/363 (52%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F +L ++ + G+ + T +Q A++P +L D+L A+TG+GKT AFV+P L++
Sbjct: 3 FAELKLAPHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQR 62
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
L GP G ++++PTRELA Q+ D ++ G +G ++GG +
Sbjct: 63 LSSPPQGPGRGPRVLVLTPTRELAQQVTDAVRTYGAFMRVRSGAILGGMPYHAQLRLLSA 122
Query: 188 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQT 247
++ +V TPGRL+ +D + D S+L++L+LDEADR+LD+GF ++ I + P RQT
Sbjct: 123 PVDFIVATPGRLVDLLDRR-SLDLSRLELLVLDEADRMLDMGFSDDVDRIAAASPATRQT 181
Query: 248 FLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP-LEQKLDMLWSFI 306
LF+AT ++ LA L++P+ + + T ++Q + L K +L I
Sbjct: 182 LLFTATMDSAMARLAGRLLREPERIDI--AGTKTTHEHIEQRLHVADDLHHKNRLLRHLI 239
Query: 307 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SV 365
+ ++F + + + + A + G L+G M Q+ R A + R +
Sbjct: 240 TDESLRRAIIFSATKRDAENL--ALELKAQGHSAAALHGDMPQNARNRTIAAMKQGRIRL 297
Query: 366 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 425
L TDVA+RGLD + V+ D P+ Y+HR+GRT R + G ++ F + E+ L
Sbjct: 298 LVATDVAARGLDVT-GISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVNYL 356
Query: 426 EKL 428
++
Sbjct: 357 ARI 359
>FB|FBgn0015331 [details] [associations]
symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
"establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
system development" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
Length = 619
Score = 455 (165.2 bits), Expect = 2.0e-42, P = 2.0e-42
Identities = 129/379 (34%), Positives = 195/379 (51%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPV--- 124
F ++ K +GL G T IQ LP L GRD++G A TGSGKTL FV+PV
Sbjct: 179 FREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMF 238
Query: 125 -LEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKH------HNFSAGLLIGGRR 177
LE+ Y + +G +II P+RELA Q ++++ KH + L +GG
Sbjct: 239 ALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGL- 297
Query: 178 DVDMEKEHVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNA 236
V + ++ ++I+V TPGRL+ +D+ + L +DEADR++D+GF++ +
Sbjct: 298 PVSEALDVISRGVHIVVATPGRLMDMLDKKI-LTLDMCRYLCMDEADRMIDMGFEEDVRT 356
Query: 237 IVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLE 296
I S RQT LFSAT K +Q+ AR +L P ++V A+ N QQ V E
Sbjct: 357 IFSFFKGQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGA-ASMNVTQQVEY-VKQE 414
Query: 297 QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRM-AI 355
K+ L ++ +L+F + V + E L G+ + ++G Q+ R A+
Sbjct: 415 AKVVYLLDCLQKTA-PPVLIFAEKKQDVDCIHEYL--LLKGVEAVAIHGGKDQEERSRAV 471
Query: 356 YAQFCEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVL 415
A K+ VL TDVAS+GLDF V V+ D P+D+ +Y+HR+GRT R N+ G +
Sbjct: 472 DAYRVGKKDVLVATDVASKGLDFPN-VQHVINYDMPDDIENYVHRIGRTGRSNTKGLATT 530
Query: 416 FLTPT-EMKMLEKLREAKI 433
+ T E +L L+ I
Sbjct: 531 LINKTTEQSVLLDLKHLLI 549
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 471 (170.9 bits), Expect = 2.1e-42, P = 2.1e-42
Identities = 136/398 (34%), Positives = 201/398 (50%)
Query: 67 RFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLE 126
+F Q P + AGF T IQ + P +L GRDI+G AKTGSGKTLAF++P +
Sbjct: 385 QFTQAPFPGYLMKEIIGAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIV 444
Query: 127 KLYKER-WGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEH 185
+ + +DG ++++PTRELA Q+ + G S + GG
Sbjct: 445 HINAQPVLREDDGPIVLVLAPTRELALQIQEETNKFGGTSQISNTCVYGGASKHTQVAAL 504
Query: 186 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHR 245
+ I++ TPGRL+ + E+ + ++ L+LDEADR+LD+GF+ + I+SQ+ R
Sbjct: 505 KKGVEIVIATPGRLIDIL-ESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDR 563
Query: 246 QTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSF 305
QT +FSAT K VQ LA L D + + +TA N Q + E+K ML SF
Sbjct: 564 QTLMFSATWPKEVQALAHDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKKERML-SF 622
Query: 306 I-KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR- 363
+ + K++VF + K V + + G + ++G Q R + +QF
Sbjct: 623 LGSVGRDEKVIVFAETRKGVDDLQRVLQF--SGFKSIGIHGNKSQPERDFVLSQFKNGMV 680
Query: 364 SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 423
++ TDVASRGLD K + +VV D P + YIHR+GRTAR + G S LT +
Sbjct: 681 PIMIATDVASRGLDI-KDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNAR 739
Query: 424 M----LEKLREAK--IPIHF--------TKANTKRLQP 447
+ ++ L EAK IPI T +NTK+ P
Sbjct: 740 LANELIKVLTEAKQKIPIELSNLSVTPSTSSNTKKFSP 777
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 452 (164.2 bits), Expect = 2.2e-42, P = 2.2e-42
Identities = 113/357 (31%), Positives = 184/357 (51%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F L + + S + GF TDIQ ++P L G+D+LG A+TG+GKT AF +P L K
Sbjct: 17 FASLGLPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPALAK 76
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKH-HNFSAGLLIGGRRDVDMEKEHV 186
+ P+ ++++PTRELA Q+ + +++ GK L GG+ ++
Sbjct: 77 IDTSIKKPQ----LMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLE 132
Query: 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246
++V TPGRL+ H+ + +L++ +LDEAD +L++GF + + I+ +PK Q
Sbjct: 133 RGAQVVVGTPGRLMDHL-RRKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPKTAQ 191
Query: 247 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFI 306
LFSAT +++ +A LKDP+++ V +V + Q A V K+ L
Sbjct: 192 MCLFSATMPPAIRKIANRFLKDPEHIKV--AAVKKAKANITQYAWKVSGITKMTALERIA 249
Query: 307 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSV 365
+ +++F+ + + E + R G P + L G + Q +R Q K S+
Sbjct: 250 EVVEYDAMIIFVRTRNDTVDIAEKLE--RAGYPALALNGDLNQAQRERCIDQMKSGKSSI 307
Query: 366 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 422
L TDV +RGLD + + V+ D P D +Y+HR+GRT R G S+ F+ P EM
Sbjct: 308 LVATDVVARGLDIPR-ISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAFVRPREM 363
>FB|FBgn0010220 [details] [associations]
symbol:Dbp45A "DEAD box protein 45A" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS;NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE013599
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 GO:GO:0000381
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
GeneTree:ENSGT00670000098028 EMBL:L13612 EMBL:Z23266 EMBL:AY058728
PIR:S38329 RefSeq:NP_476927.1 UniGene:Dm.4231
ProteinModelPortal:Q07886 SMR:Q07886 PaxDb:Q07886
EnsemblMetazoa:FBtr0088564 GeneID:35917 KEGG:dme:Dmel_CG12759
CTD:35917 FlyBase:FBgn0010220 InParanoid:Q07886 OMA:CQLLSMT
OrthoDB:EOG431ZDJ PhylomeDB:Q07886 GenomeRNAi:35917 NextBio:795815
Bgee:Q07886 GermOnline:CG12759 Uniprot:Q07886
Length = 521
Score = 436 (158.5 bits), Expect = 2.2e-42, Sum P(2) = 2.2e-42
Identities = 138/481 (28%), Positives = 236/481 (49%)
Query: 73 ISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKER 132
+ + TK GLK A T IQ+ +P L G+D +GAAKTGSGKT AF +P+LE+L +E
Sbjct: 19 VKQLTKLGLKGA-----TPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEE- 72
Query: 133 WGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNIL 192
P +++++PT ELA Q+ + G+ ++ GG + ++ + +I+
Sbjct: 73 --PVSHF-ALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHIV 129
Query: 193 VCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSA 252
V PGRL H+ F L+ L++DEADR+L+ F ++L+ I LPK RQ FSA
Sbjct: 130 VAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLSIIERCLPKTRQNLFFSA 189
Query: 253 TQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK----LDMLWSFIKA 308
T +++ + + + ++S AT L Q ++ + ++ L + +
Sbjct: 190 TMKDFIKESSIFPIASDCF-EWSQDSDVATVETLDQRYLLCADYDRDMVLIEALRKYREE 248
Query: 309 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVLF 367
+ N+ +++F + K + + K + I +CL+G M+Q R+A ++F + L
Sbjct: 249 NENANVMIFTNTKKYCQLLSMTLKNME--IDNVCLHGFMRQKERVAALSRFKSNQIRTLI 306
Query: 368 CTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSV-LFLTPTEMKMLE 426
TDVA+RGLD +V+ V+ P YIHRVGRTAR G S+ +F P ++++L
Sbjct: 307 ATDVAARGLDI-PSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLA 365
Query: 427 KLRE---AKIPIH-FTKANTKRL---QPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHI 479
+ E K+ H + +R+ V+ + + + D RAQ Y R I
Sbjct: 366 AIEEEINTKLTEHPIDQRMVERIFMQVNVTRRESEMQLDNNDFDERAQN----YRRKTWI 421
Query: 480 QKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNAEKEDKLMISRE 539
+ K+ D+ A K+R + +K+ K+ +P A +E K ++ E
Sbjct: 422 MEGKDP--------DQMEALYRKKQKDKLREIRRKR-KLQHAEPA---ASEEGKALLQDE 469
Query: 540 K 540
+
Sbjct: 470 R 470
Score = 38 (18.4 bits), Expect = 2.2e-42, Sum P(2) = 2.2e-42
Identities = 20/83 (24%), Positives = 34/83 (40%)
Query: 564 EGK-ADLLEDVMRATRVKK----NKKLKINVHRPL----GTRLVFDEECNTVPPLAMLAD 614
EGK D +E + R + K +K K+ P G L+ DE +V
Sbjct: 423 EGKDPDQMEALYRKKQKDKLREIRRKRKLQHAEPAASEEGKALLQDERFKSVDSARFEKK 482
Query: 615 TKNANVSLDQDQKTEYYKKIREE 637
K + + +D T+ K++ +E
Sbjct: 483 GKGRSRATQEDTPTKPLKRLNKE 505
>UNIPROTKB|Q8EI96 [details] [associations]
symbol:srmB "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 451 (163.8 bits), Expect = 2.8e-42, P = 2.8e-42
Identities = 114/367 (31%), Positives = 192/367 (52%)
Query: 67 RFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLE 126
+F+ + LK G + T IQ+ +LPH+L RDIL A TG+GKT +F++P L+
Sbjct: 2 QFEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQ 61
Query: 127 KL--YKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKE 184
L + R+ + V +I++PTRELA Q+ + + ++ GG E+
Sbjct: 62 HLIDFPRRYSGQARV--LILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEA 119
Query: 185 HVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKH 244
++ILV TPGRL++++D+ F + ILI+DEADR+LD+GF + AI +
Sbjct: 120 LKGNIDILVATPGRLMEYLDKG-KFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGR 178
Query: 245 RQTFLFSAT-QTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP-LEQKLDML 302
+Q LFSAT + V AR L DP + + ++ ++ Q + + K +L
Sbjct: 179 KQNMLFSATLEGSGVIRFAREVLNDP--IEIDVDAPRKEKAKIHQWIHLADDKDHKFALL 236
Query: 303 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK 362
+K + +VF+ + + V E + L+ GIP + G M+Q +R ++F +
Sbjct: 237 CHLLKQEDVKRAIVFVKT-RDVVSSLEG-QLLQAGIPCAFMRGDMEQKKRFQALSRFTKG 294
Query: 363 R-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 421
+VL TDVA+RG+D + + V+ D P +YIHR+GRT R + G ++ +
Sbjct: 295 EVNVLLATDVAARGIDIDD-ISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHD 353
Query: 422 MKMLEKL 428
M+++ K+
Sbjct: 354 MRIVGKI 360
>TIGR_CMR|SO_0947 [details] [associations]
symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 451 (163.8 bits), Expect = 2.8e-42, P = 2.8e-42
Identities = 114/367 (31%), Positives = 192/367 (52%)
Query: 67 RFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLE 126
+F+ + LK G + T IQ+ +LPH+L RDIL A TG+GKT +F++P L+
Sbjct: 2 QFEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQ 61
Query: 127 KL--YKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKE 184
L + R+ + V +I++PTRELA Q+ + + ++ GG E+
Sbjct: 62 HLIDFPRRYSGQARV--LILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEA 119
Query: 185 HVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKH 244
++ILV TPGRL++++D+ F + ILI+DEADR+LD+GF + AI +
Sbjct: 120 LKGNIDILVATPGRLMEYLDKG-KFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGR 178
Query: 245 RQTFLFSAT-QTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP-LEQKLDML 302
+Q LFSAT + V AR L DP + + ++ ++ Q + + K +L
Sbjct: 179 KQNMLFSATLEGSGVIRFAREVLNDP--IEIDVDAPRKEKAKIHQWIHLADDKDHKFALL 236
Query: 303 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK 362
+K + +VF+ + + V E + L+ GIP + G M+Q +R ++F +
Sbjct: 237 CHLLKQEDVKRAIVFVKT-RDVVSSLEG-QLLQAGIPCAFMRGDMEQKKRFQALSRFTKG 294
Query: 363 R-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 421
+VL TDVA+RG+D + + V+ D P +YIHR+GRT R + G ++ +
Sbjct: 295 EVNVLLATDVAARGIDIDD-ISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHD 353
Query: 422 MKMLEKL 428
M+++ K+
Sbjct: 354 MRIVGKI 360
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 450 (163.5 bits), Expect = 3.7e-42, P = 3.7e-42
Identities = 125/398 (31%), Positives = 206/398 (51%)
Query: 59 FSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTL 118
+S + F L I + + D G+ T IQ A++P + G D++G A+TG+GKT
Sbjct: 6 YSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTA 65
Query: 119 AFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRD 178
AF IP+L K+ P+ ++++ PTRELA Q+ + G + + L I G
Sbjct: 66 AFAIPMLSKIDITSKVPQ----ALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSS 121
Query: 179 VDMEKEHVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAI 237
++ + ++V TPGR++ H+ E D S++ L+LDEAD +L +GF + I
Sbjct: 122 YAVQLAGLRRGAQVVVGTPGRMIDHL-ERATLDLSRVDFLVLDEADEMLTMGFADDVERI 180
Query: 238 VSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ 297
+S+ P+++Q LFSAT +++ L+ L DP V ++ TA + Q+ + + +
Sbjct: 181 LSETPEYKQVALFSATMPPAIRKLSAKYLHDP--FEVTCKAKTAVAENISQS--YIQVAR 236
Query: 298 KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRP-GIPLMCLYGRMKQ-DRRMAI 355
K+D L ++ ++VF+ + KQ E +KLR G + G + Q R I
Sbjct: 237 KMDALTRVLEVEPFEAMIVFVRT-KQATE--EIAEKLRARGFSAAAISGDVPQAQRERTI 293
Query: 356 YAQFCEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVL 415
A +L TDVA+RGLD + + V+ D P D SY+HR+GRT R G +++
Sbjct: 294 TALRDGDIDILVATDVAARGLDVER-ISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALI 352
Query: 416 FLTPTEM---KMLEK-----LREAKIPIHFTKANTKRL 445
F++P E+ K +EK L EA++P NT+R+
Sbjct: 353 FVSPRELHLLKAIEKATRQTLTEAQLPT-VEDVNTQRV 389
>SGD|S000002319 [details] [associations]
symbol:DHH1 "Cytoplasmic DExD/H-box helicase, stimulates mRNA
decapping" species:4932 "Saccharomyces cerevisiae" [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=IGI;ISS]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002319 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 EMBL:BK006938 GO:GO:0003723
GO:GO:0000753 GO:GO:0000932 EMBL:Z67750 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0034063 GO:GO:0008026 eggNOG:COG0513
GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797 KO:K12614
OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000290 OrthoDB:EOG4QJVWF EMBL:X66057 EMBL:Z74208 PIR:S31229
RefSeq:NP_010121.1 PDB:1S2M PDBsum:1S2M ProteinModelPortal:P39517
SMR:P39517 DIP:DIP-1243N IntAct:P39517 MINT:MINT-385061
STRING:P39517 PaxDb:P39517 PeptideAtlas:P39517 EnsemblFungi:YDL160C
GeneID:851394 KEGG:sce:YDL160C CYGD:YDL160c
EvolutionaryTrace:P39517 NextBio:968552 Genevestigator:P39517
GermOnline:YDL160C Uniprot:P39517
Length = 506
Score = 450 (163.5 bits), Expect = 3.7e-42, P = 3.7e-42
Identities = 125/370 (33%), Positives = 199/370 (53%)
Query: 64 GSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIP 123
G+T F+ + ++ G+ +AGF K + IQ ++P ++ GRDIL AK G+GKT AFVIP
Sbjct: 45 GNT-FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIP 103
Query: 124 VLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEK 183
LEK+ K + + ++I+ PTRELA Q V++ +GKH S + GG D +
Sbjct: 104 TLEKV-KPKLNK---IQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRD-DI 158
Query: 184 EHVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP 242
+NE ++ILV TPGR+L + D S + I+DEAD++L FK + I+S LP
Sbjct: 159 LRLNETVHILVGTPGRVLD-LASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP 217
Query: 243 KHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDML 302
Q+ LFSAT +V++ L P +++ EE T + Q V QKL L
Sbjct: 218 PTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE---LTLKGITQYYAFVEERQKLHCL 274
Query: 303 WS-FIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 361
+ F K +N I +F S +V+ + + L G + RMKQ R ++ +F +
Sbjct: 275 NTLFSKLQINQAI-IFCNSTNRVELLAKKITDL--GYSCYYSHARMKQQERNKVFHEFRQ 331
Query: 362 -KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 420
K L C+D+ +RG+D +AV+ V+ D P+ +Y+HR+GR+ R+ G ++ +
Sbjct: 332 GKVRTLVCSDLLTRGIDI-QAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWN 390
Query: 421 EMKMLEKLRE 430
+ L K+ +
Sbjct: 391 DRFNLYKIEQ 400
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 455 (165.2 bits), Expect = 6.0e-42, P = 6.0e-42
Identities = 124/373 (33%), Positives = 193/373 (51%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F +L +S+ L + G+ K T IQ AS+ + G+DILG A+TG+GKT AF +P+L K
Sbjct: 8 FRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNK 67
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKH-HNFSAGLLIGGRRDVDMEKEHV 186
+ + P+ ++++PTRELA Q+ + + K NF + GG+ M+++ +
Sbjct: 68 VTSQTT-PQ----ILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQ---SMQQQ-L 118
Query: 187 NELN----ILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP 242
N L ++V TPGR++ HM LQ L+LDEAD +L +GF + I+ P
Sbjct: 119 NALKRGPQVIVGTPGRVMDHM-RRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTP 177
Query: 243 KHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDML 302
RQ LFSAT + ++ +A LK+ +S+ T + ++Q + V KL+ L
Sbjct: 178 PQRQLALFSATMPEQIKRVANKHLKNATNISIAASHTTV--DSIEQRFVQVSQHNKLEAL 235
Query: 303 WSFIKAHLNSKILVFL---TSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF 359
++ I++F+ SC ++ EA G L+G M Q R Q
Sbjct: 236 VRVLEVENTEGIIIFVRTRNSCVELAEKLEA-----RGYASSPLHGDMNQQARERAVEQL 290
Query: 360 CE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 418
K +L TDVA+RGLD + + VV D P D +Y+HR+GRT R G ++LF+T
Sbjct: 291 KNGKLDILIATDVAARGLDVER-IGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVT 349
Query: 419 PTEMKMLEKLREA 431
EM+ML + A
Sbjct: 350 SREMRMLRTIERA 362
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 448 (162.8 bits), Expect = 6.2e-42, P = 6.2e-42
Identities = 114/353 (32%), Positives = 191/353 (54%)
Query: 81 LKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERW-GPEDGV 139
+K AGF + T IQ P ++ GRD++G A+TGSGKTL++++P + + + DG
Sbjct: 114 VKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGP 173
Query: 140 GSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRL 199
++++PTRELA Q+ G + GG ++ + I++ TPGRL
Sbjct: 174 IVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRL 233
Query: 200 LQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQ 259
+ M E+ N + ++ L+LDEADR+LD+GF + IVS + RQT +SAT K V+
Sbjct: 234 IDMM-ESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVE 292
Query: 260 DLARLSLKDPQYLSVHEESVTATPNR-LQQTAMIVPLEQKLDMLWSFIKAHLN-SKILVF 317
L++ L +P + + + A NR ++Q ++ QK + L ++ ++ S+ILVF
Sbjct: 293 QLSKKFLYNPYKVIIGSSDLKA--NRAIRQIVDVISESQKYNKLVKLLEDIMDGSRILVF 350
Query: 318 LTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCEKRS-VLFCTDVASRG 375
L + K + ++LR G P + ++G Q R + ++F +S ++ TDVA+RG
Sbjct: 351 LDTKKGCDQIT---RQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARG 407
Query: 376 LDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 428
LD K V +V+ D P + Y+HR+GRT R + G + F T + ++L
Sbjct: 408 LDV-KDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKEL 459
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 447 (162.4 bits), Expect = 8.1e-42, P = 8.1e-42
Identities = 117/367 (31%), Positives = 192/367 (52%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
FD+ + S +K GF K T IQ P +L GRD++G A+TGSGKTL++ +P +
Sbjct: 142 FDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIVH 201
Query: 128 LYKERW-GPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV 186
+ + P DG +I++PTRELA Q+ + GK + GG ++
Sbjct: 202 INAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLS 261
Query: 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246
+ + + TPGRL+ M E + ++ L+LDEADR+LD+GF+ + I+SQ+ RQ
Sbjct: 262 RGVEVCIATPGRLID-MLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQ 320
Query: 247 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPN-RLQQTAMIVPLEQKLDMLWSF 305
T ++SAT K V+ LA L + Y+ V+ S+ + N R+ Q ++ +K D +
Sbjct: 321 TCMWSATWPKEVRQLASDFLNN--YIQVNIGSMDLSANHRITQIVEVISEFEKRDRMIKH 378
Query: 306 IKAHLNS---KILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK 362
++ + + K LVF T K++ F + + G P + ++G +Q R + +F
Sbjct: 379 LEKIMENRGNKCLVF-TGTKRIADEITRFLR-QDGWPALSIHGDKQQQERDWVLNEFKTG 436
Query: 363 RS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 421
+S ++ TDVASRG+D + + V+ D P + Y+HR+GRT R + G ++ F T
Sbjct: 437 KSPIMVATDVASRGIDV-RDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDN 495
Query: 422 MKMLEKL 428
K L
Sbjct: 496 AKQARDL 502
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 445 (161.7 bits), Expect = 1.3e-41, P = 1.3e-41
Identities = 122/364 (33%), Positives = 188/364 (51%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F LP S K D GF T IQ A+ P GRD++G A+TGSGKTLAF +P L+K
Sbjct: 76 FSFLPPSNKDLYAPLD-GFASPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKK 134
Query: 128 LYKERWGPEDGVG-SIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV 186
+ + + +++ISPTRELA Q++D L + + + GG + D ++E +
Sbjct: 135 VLDLKTKQKSCRPLAVVISPTRELAMQIYDQLVKFAEKVDIQVACIFGGVKK-DEQREAL 193
Query: 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP-KHR 245
++V TPGRL + + + D +++ L+LDEADR+LD GF++ + I+S +P R
Sbjct: 194 KSAAVVVATPGRL-KDLQNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPVSKR 252
Query: 246 QTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATP---NRLQQTAMIVPLEQKLDML 302
QT +F+AT V++LA + P +++ + +A P +R++Q +V +K L
Sbjct: 253 QTVMFTATWPPIVRNLASTFMTSPVTVTIGGDP-SADPRANSRIKQVVEVVKPHEKEQRL 311
Query: 303 WSFIKAHLNS---KILVFLTSCKQVKYVFEAFKKLRP-GIPLMCLYGRMKQDRRMAIYAQ 358
+ H K+L F C K + LR G + ++G + Q R
Sbjct: 312 VQILNRHQRGTPDKVLAF---CLYKKEAMRVERLLRTKGFKVAGIHGDLSQQERFRSLEA 368
Query: 359 FCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFL 417
F +VL TDVA+RGLD V VV V P V Y+HR+GRT R + G ++
Sbjct: 369 FKSGAATVLVATDVAARGLDIPH-VKLVVNVTFPLTVEDYVHRIGRTGRAGADGHAITLF 427
Query: 418 TPTE 421
T T+
Sbjct: 428 TETD 431
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 445 (161.7 bits), Expect = 1.3e-41, P = 1.3e-41
Identities = 120/377 (31%), Positives = 200/377 (53%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
FD+ + +K GF T IQ P +L GRD++G A+TGSGKTL + +P +
Sbjct: 127 FDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 186
Query: 128 LYKERW-GPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV 186
+ + P DG +I++PTRELA Q+ + GK + GG ++
Sbjct: 187 INAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLS 246
Query: 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246
+ + + TPGRL+ M E+ + ++ L+LDEADR+LD+GF+ + I+ Q+ RQ
Sbjct: 247 RGVEVCIATPGRLID-MLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQ 305
Query: 247 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPN-RLQQTAMIVPLEQKLDMLWSF 305
T ++SAT K V+++A L+D ++ V+ S+ + N R+ Q +V +K D +
Sbjct: 306 TLMWSATWPKEVRNMAADFLQD--FIQVNIGSLDLSANHRITQIVEVVSESEKRDRMIRH 363
Query: 306 IKAHLN-----SKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFC 360
++ ++ +KIL+F+ + K+V F + + G P + ++G +Q+ R + QF
Sbjct: 364 MEKVMDGKDSKNKILIFVGT-KRVADEITRFLR-QDGWPALSIHGDKQQNERDWVLDQFK 421
Query: 361 EKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTP 419
+S ++ TDVASRG+D + V+ D P + YIHR+GRT R + G ++ F T
Sbjct: 422 TGKSPIMVATDVASRGIDVRN-ITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTT 480
Query: 420 TEMK----MLEKLREAK 432
K +L L+EAK
Sbjct: 481 ENSKQARDLLGVLQEAK 497
>POMBASE|SPBC543.06c [details] [associations]
symbol:dbp8 "ATP-dependent RNA helicase Dbp8
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC543.06c GO:GO:0005524 GO:GO:0005730
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW
RefSeq:NP_596794.1 ProteinModelPortal:Q9HGM5 STRING:Q9HGM5
EnsemblFungi:SPBC543.06c.1 GeneID:2541069 KEGG:spo:SPBC543.06c
NextBio:20802183 Uniprot:Q9HGM5
Length = 453
Score = 445 (161.7 bits), Expect = 1.3e-41, P = 1.3e-41
Identities = 123/378 (32%), Positives = 197/378 (52%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F L IS LK + TDIQ + L GR+ +G AKTGSGKT AF +P++EK
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGG----RRDVDMEK 183
K+ P G+ ++I++PTRELA Q+ + A+G + N L++GG R+ +D+ K
Sbjct: 69 WSKD---PS-GIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSK 124
Query: 184 EHVNELNILVCTPGRL---LQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ 240
+++V TPGRL ++ E +++ L++DEADR+L F L+ S
Sbjct: 125 RP----HVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSV 180
Query: 241 LP--KHRQTFLFSATQTKSVQDLA---RLSLKDPQYLSVHEESVTATPNRLQQTAMIVPL 295
LP + RQT LF+AT T +++ L + + K P +L E + P+ LQQ+ + V
Sbjct: 181 LPASEDRQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSS 240
Query: 296 EQKLDMLWSFIKAHLNSK--ILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRM 353
+ + L + N+K ++F+ + + ++ + L + + L+ M Q R+
Sbjct: 241 QVREAYLVHLLTIPENAKKSAIIFVNRTRTAELIYSILRLLE--LRVTELHSEMVQRERI 298
Query: 354 AIYAQF-CEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGR 412
+F E +L TDVASRGLD +V V+ D P D YIHRVGRTAR G
Sbjct: 299 NSLGRFRAEAAKILVATDVASRGLDI-PSVQLVINFDLPRDPDDYIHRVGRTARAGRSGE 357
Query: 413 SVLFLTPTEMKMLEKLRE 430
S+ +T ++ ++ + +
Sbjct: 358 SISIVTERDVDLVHAIED 375
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 445 (161.7 bits), Expect = 1.3e-41, P = 1.3e-41
Identities = 125/386 (32%), Positives = 197/386 (51%)
Query: 66 TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVL 125
T FD+ + +K GF K T IQ P +L GRD++G A TGSGKTL++ +P +
Sbjct: 113 TTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGI 172
Query: 126 EKLYKERW-GPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKE 184
+ + P DG ++++PTRELA Q+ G + GG ++
Sbjct: 173 VHINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRD 232
Query: 185 HVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKH 244
I++ TPGRL+ M E + ++ L+LDEADR+LD+GF+ + IV Q+
Sbjct: 233 LSRGSEIVIATPGRLID-MLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 291
Query: 245 RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWS 304
RQT ++SAT K V+ LA L DP + V ++A+ N + Q +V +K D L
Sbjct: 292 RQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHN-ITQIVEVVSDFEKRDRLNK 350
Query: 305 FIKAHLNS---KILVFLTSCKQVKYVFEAFKKLRP-GIPLMCLYGRMKQDRRMAIYAQFC 360
+++ K L+F S K++ + K LR G P + ++G Q R + +F
Sbjct: 351 YLETASQDNEYKTLIF-ASTKRM--CDDITKYLREDGWPALAIHGDKDQRERDWVLQEFR 407
Query: 361 EKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTP 419
RS ++ TDVA+RG+D K +++V+ D P ++ Y+HR+GRT R + G ++ F T
Sbjct: 408 NGRSPIMVATDVAARGIDV-KGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTE 466
Query: 420 TEM----KMLEKLREAK--IPIHFTK 439
K++ +REA IP K
Sbjct: 467 QNKGLGAKLISIMREANQNIPPELLK 492
>UNIPROTKB|Q485I3 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 444 (161.4 bits), Expect = 1.8e-41, P = 1.8e-41
Identities = 122/374 (32%), Positives = 194/374 (51%)
Query: 65 STRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPV 124
S F L + + L G+ +MT IQ +LP L G+D++G AKTGSGKT AF + +
Sbjct: 9 SLAFSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLAL 68
Query: 125 LEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKH-HNFSAGLLIGGRRDVDMEK 183
L KL +++ + S++I PTRELADQ+ L+ + + HN L GG
Sbjct: 69 LNKLEVKKFR----IQSMVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQIG 124
Query: 184 EHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPK 243
+ +++V TPGRL +H+ + L +L+LDEADR+L++GF+ AL+ IV + P
Sbjct: 125 SLEHGAHVIVGTPGRLEEHVIKG-TLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTPL 183
Query: 244 HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLW 303
RQT LFSAT ++ ++ + DP + + +T + Q+ + + +LD L
Sbjct: 184 DRQTLLFSATFPDQIKSISESIMTDPVMVKIASSEDQSTIS--QKFFKVGNDDDRLDALR 241
Query: 304 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR 363
+ + +F + K+ + V +A G ++ L+G ++Q R +F K
Sbjct: 242 LLLLGNQVESTAIFCNTKKETQQVADALHF--DGFSVLALHGDLEQRDRDQTLLRFANKS 299
Query: 364 -SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSV-LFLTPTE 421
S+L TDVA+RGLD + ++D V+ D ++HR+GRT R S G + LF
Sbjct: 300 ASILVATDVAARGLDID-SLDLVINYHIARDSEVHVHRIGRTGRAGSTGIAYSLFSDKES 358
Query: 422 MK--MLEKLREAKI 433
K +LE EA I
Sbjct: 359 YKVGLLEDYLEAVI 372
>TIGR_CMR|CPS_1540 [details] [associations]
symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 444 (161.4 bits), Expect = 1.8e-41, P = 1.8e-41
Identities = 122/374 (32%), Positives = 194/374 (51%)
Query: 65 STRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPV 124
S F L + + L G+ +MT IQ +LP L G+D++G AKTGSGKT AF + +
Sbjct: 9 SLAFSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLAL 68
Query: 125 LEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKH-HNFSAGLLIGGRRDVDMEK 183
L KL +++ + S++I PTRELADQ+ L+ + + HN L GG
Sbjct: 69 LNKLEVKKFR----IQSMVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQIG 124
Query: 184 EHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPK 243
+ +++V TPGRL +H+ + L +L+LDEADR+L++GF+ AL+ IV + P
Sbjct: 125 SLEHGAHVIVGTPGRLEEHVIKG-TLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTPL 183
Query: 244 HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLW 303
RQT LFSAT ++ ++ + DP + + +T + Q+ + + +LD L
Sbjct: 184 DRQTLLFSATFPDQIKSISESIMTDPVMVKIASSEDQSTIS--QKFFKVGNDDDRLDALR 241
Query: 304 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR 363
+ + +F + K+ + V +A G ++ L+G ++Q R +F K
Sbjct: 242 LLLLGNQVESTAIFCNTKKETQQVADALHF--DGFSVLALHGDLEQRDRDQTLLRFANKS 299
Query: 364 -SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSV-LFLTPTE 421
S+L TDVA+RGLD + ++D V+ D ++HR+GRT R S G + LF
Sbjct: 300 ASILVATDVAARGLDID-SLDLVINYHIARDSEVHVHRIGRTGRAGSTGIAYSLFSDKES 358
Query: 422 MK--MLEKLREAKI 433
K +LE EA I
Sbjct: 359 YKVGLLEDYLEAVI 372
>TAIR|locus:2127043 [details] [associations]
symbol:RH8 "RNAhelicase-like 8" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016032 "viral reproduction" evidence=IMP] [GO:0019048
"virus-host interaction" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0019048 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 EMBL:AF058919 EMBL:AL161472
GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 OMA:QFMEKHL
ProtClustDB:CLSN2683443 EMBL:AJ010460 EMBL:AY080837 EMBL:AY113985
IPI:IPI00531108 PIR:T01230 PIR:T51741 RefSeq:NP_191975.2
RefSeq:NP_849535.1 UniGene:At.25593 UniGene:At.67100
UniGene:At.71300 ProteinModelPortal:Q8RXK6 SMR:Q8RXK6 STRING:Q8RXK6
PaxDb:Q8RXK6 PRIDE:Q8RXK6 EnsemblPlants:AT4G00660.1
EnsemblPlants:AT4G00660.2 GeneID:828042 KEGG:ath:AT4G00660
GeneFarm:919 TAIR:At4g00660 InParanoid:Q8RXK6 PhylomeDB:Q8RXK6
Genevestigator:Q8RXK6 GermOnline:AT4G00660 Uniprot:Q8RXK6
Length = 505
Score = 444 (161.4 bits), Expect = 1.8e-41, P = 1.8e-41
Identities = 123/383 (32%), Positives = 201/383 (52%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F+ + ++ G+ + GF + + IQ S+P +L GRDIL AK G+GKT AF IPVLEK
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
+ ++ + + ++II PTRELA Q V K +GKH + GG D
Sbjct: 193 IDQDN----NVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQ 248
Query: 188 ELNILVCTPGRLLQHMDETPNFDC--SQLQILILDEADRILDVGFKKALNAIVSQLPKHR 245
+++LV TPGR+L D T C +L++DEAD++L F+ ++ ++S LP+ R
Sbjct: 249 PVHLLVGTPGRIL---DLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESR 305
Query: 246 QTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWS- 304
Q +FSAT +V+D L +P +++ +E T + Q V QK+ L +
Sbjct: 306 QILMFSATFPVTVKDFKDRFLTNPYVINLMDE---LTLKGITQFYAFVEERQKIHCLNTL 362
Query: 305 FIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS 364
F K +N I +F S +V+ + + +L G ++ +M QD R ++ F
Sbjct: 363 FSKLQINQSI-IFCNSVNRVELLAKKITEL--GYSCFYIHAKMLQDHRNRVFHDFRNGAC 419
Query: 365 V-LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 423
L CTD+ +RG+D +AV+ V+ D P++ +Y+HRVGR+ R+ G +V +T +
Sbjct: 420 RNLVCTDLFTRGIDI-QAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRF 478
Query: 424 MLEKLREA------KIPIHFTKA 440
L ++ + +IP H +A
Sbjct: 479 NLYRIEQELGTEIKQIPPHIDQA 501
>DICTYBASE|DDB_G0287361 [details] [associations]
symbol:ddx41 "DEAD box protein abstrakt"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
Length = 671
Score = 458 (166.3 bits), Expect = 2.3e-41, P = 2.3e-41
Identities = 131/380 (34%), Positives = 202/380 (53%)
Query: 66 TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIP-V 124
T F ++ I K L + G K + IQ LP L GRD++G A TGSGKTL F +P V
Sbjct: 222 TTFKEMKIPKPVIDVLLEKGIKKPSPIQVQGLPVILSGRDMIGIAYTGSGKTLVFTLPMV 281
Query: 125 LEKLYKERWGP---EDGVGSIIISPTRELADQLFDVLKAV-------GKHHNFSAGLLIG 174
L L +E P +G +I+ P+RELA Q +D++ + G H L IG
Sbjct: 282 LFALEEECKLPIIQGEGPFGLILCPSRELARQTYDLVNSFTNALHKNGGHPQLRTLLAIG 341
Query: 175 GRRDVDM-EKEHVNE--LNILVCTPGRLLQHMDETP-NFD-CSQLQILILDEADRILDVG 229
G +D+ E+EH+ + +++++ TPGRLL +++ NF C L LDEADR++D+G
Sbjct: 342 G---IDLREQEHIFKKGVHMIIATPGRLLDLLNKKKINFKLCKYLG---LDEADRLIDLG 395
Query: 230 FKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQT 289
F+ + +++ RQT LFSAT K +Q+ AR +L P ++V A N Q+
Sbjct: 396 FEDDIRSVLDNFTNQRQTLLFSATMPKKIQEFARSALVLPVEVNVGRAGA-ANLNVTQEV 454
Query: 290 AMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ 349
+ P E K+ L ++ +L+F + K V ++E L + + ++G Q
Sbjct: 455 EFVKP-EAKIVYLLECLQK-TPPPVLIFCENKKDVDDIYEYL--LLKQVEAVSIHGDKSQ 510
Query: 350 DRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYN 408
D R + F E K+ VL TDVAS+GLDF + + V+ D P ++ +YIHR+GRT R
Sbjct: 511 DERESAIKAFREGKKDVLVATDVASKGLDFPE-IQHVINFDMPREIENYIHRIGRTGRRG 569
Query: 409 SGGRSVLFLTP--TEMKMLE 426
+ G + F+ TE +L+
Sbjct: 570 NKGVATTFINKNNTESLLLD 589
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 469 (170.2 bits), Expect = 2.4e-41, Sum P(2) = 2.4e-41
Identities = 131/384 (34%), Positives = 198/384 (51%)
Query: 66 TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVL 125
T + Q +S +T S + G+ K T IQ ++P GRD++G AKTGSGKT+AF++P+
Sbjct: 418 TSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMF 477
Query: 126 EKLYKERWGP-EDGVG--SIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDME 182
+ +R P + G G +II++PTRELA Q+F K K N A GG D
Sbjct: 478 RHIKDQR--PLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQI 535
Query: 183 KEHVNELNILVCTPGRLLQHMDETPN--FDCSQLQILILDEADRILDVGFKKALNAIVSQ 240
+ I+VCTPGR++ + + + L+LDEADR+ D+GF+ + I++
Sbjct: 536 ADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINN 595
Query: 241 LPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK-- 298
+ RQT LFSAT ++++ LAR LK P ++V SV A+ ++Q + P E K
Sbjct: 596 IRPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVAS--EVEQIVEVRPEESKFS 653
Query: 299 --LDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ-DRRMAI 355
L++L L+ + LVF+ + + K G ++G Q DR I
Sbjct: 654 RLLELLGELYNNQLDVRTLVFVDRQESADALLSDLMKR--GYTSNSIHGGKDQHDRDSTI 711
Query: 356 YAQFCEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVL 415
VL T V +RGLD K++ VV DCP + Y+HRVGRT R G +V
Sbjct: 712 SDYKAGVFDVLIATSVVARGLDV-KSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVT 770
Query: 416 FLTPTEMK----MLEKLREAKIPI 435
F+TP + K + + L+ +K P+
Sbjct: 771 FITPEQEKYAVDIAKALKMSKQPV 794
Score = 39 (18.8 bits), Expect = 2.4e-41, Sum P(2) = 2.4e-41
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 4 SKRKPNRKAVRSMEIEEIELLNSW 27
S R+ + RS E +I NSW
Sbjct: 44 SSRRDRHDSFRSHESNKIRRDNSW 67
>ZFIN|ZDB-GENE-021220-2 [details] [associations]
symbol:ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
54" species:7955 "Danio rerio" [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021220-2 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14808
HOGENOM:HOG000246455 GeneTree:ENSGT00550000075100 CTD:79039
HOVERGEN:HBG051333 OrthoDB:EOG469QTB EMBL:CU929062 EMBL:FP236447
EMBL:AY099535 IPI:IPI00481864 RefSeq:NP_775375.1 UniGene:Dr.18320
STRING:Q8JGR2 Ensembl:ENSDART00000026416 Ensembl:ENSDART00000128587
GeneID:286777 KEGG:dre:286777 NextBio:20806437 Uniprot:Q8JGR2
Length = 862
Score = 463 (168.0 bits), Expect = 2.8e-41, P = 2.8e-41
Identities = 146/525 (27%), Positives = 250/525 (47%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F + +S G+ G+ T IQR ++P L G+D++ A+TGSGKT AF++P+ EK
Sbjct: 80 FQSMGLSYPVYKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTAAFLVPLFEK 139
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGG-RRDVDMEKEHV 186
L + + G ++I++PTRELA Q K +GK L++GG D H
Sbjct: 140 LKAPQ--AQTGARALILTPTRELALQTMKFTKELGKFTGLRTALILGGDSMDDQFAALHE 197
Query: 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246
N +I++ TPGRL+ H+ + N ++ ++ DEADR+ ++GF + L I+ +LP RQ
Sbjct: 198 NP-DIIIGTPGRLM-HVIQEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIRRLPDARQ 255
Query: 247 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFI 306
T LFSAT K + + AR L +P + + + T +L+ + + L+ K +L +
Sbjct: 256 TLLFSATLPKLIVEFARAGLTEPVLIRLDVD--TKLSEQLKLSFFSLRLDDKPALLLHLL 313
Query: 307 KAHLN--SKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR- 363
+ + + +VF+ + V+Y+ E G+ C+Y + Q R +F ++
Sbjct: 314 RNVVKPQEQTVVFVATKHHVEYLKELLSA--EGVDCSCIYSALDQTARKISIGRFVHRKV 371
Query: 364 SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 423
+L TDVA+RG+D +D V+ + P ++HRVGR AR GG + + P E+
Sbjct: 372 MLLLVTDVAARGIDI-PLLDNVINYNFPCKPKLFLHRVGRVARAGRGGTAYSLVCPDEVP 430
Query: 424 MLEKLRE-AKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFIT-YLRSVHIQK 481
L L P+ A+ + Q G+ + D Q IT + S+ +Q
Sbjct: 431 YLYDLHLFLGRPMQL--AHPEHTQEADGVFGRVPQSVLD-DEECQ--LITAHQNSLDLQN 485
Query: 482 DKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNAEKEDKLMISREKL 541
+ V ++ + ++ S +P I+ + + V P+L +K+ + R L
Sbjct: 486 LRRV---SENAYKQYLKSRPVPSAESIKRSRNTQLTDMAVHPLLGCGL--EKMELDR-LL 539
Query: 542 LPDNFTEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKLK 586
+ D I E I K E VMRA R + ++++
Sbjct: 540 MVDTIKGYKAKSTIFE---INSSNKTSASE-VMRAKRSRDRQRVE 580
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 442 (160.7 bits), Expect = 2.9e-41, P = 2.9e-41
Identities = 118/359 (32%), Positives = 187/359 (52%)
Query: 86 FVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPE-DGVGSIII 144
F + T IQ P +L G D++G A+TGSGKTL++++P + + + + DG +++
Sbjct: 102 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL 161
Query: 145 SPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMD 204
+PTRELA Q+ V + + + GG ++ + I + TPGRL+ +
Sbjct: 162 APTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL- 220
Query: 205 ETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARL 264
E + + L+LDEADR+LD+GF+ + IV Q+ RQT ++SAT K V+ LA
Sbjct: 221 EAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAED 280
Query: 265 SLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ--KLDMLWSFIKAHLNSKILVFLTSCK 322
LK+ ++++ ++A N LQ + +E+ KL L I + +K +VF+ + +
Sbjct: 281 FLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVETKR 340
Query: 323 QVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKA 381
+ + K R G P M ++G Q R + +F K +L TDVASRGLD
Sbjct: 341 RCDDLTR--KMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVED- 397
Query: 382 VDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK----MLEKLREAKIPIH 436
V +V+ D P YIHR+GRTAR G + F TP +K ++ LREA I+
Sbjct: 398 VKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLISVLREANQAIN 456
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 451 (163.8 bits), Expect = 3.7e-41, P = 3.7e-41
Identities = 115/377 (30%), Positives = 195/377 (51%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F L +S+ ++ AG+ + T +Q+ ++P L GRD++ AA+TG+GKT F +P+LE+
Sbjct: 3 FASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62
Query: 128 LY-------KERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVD 180
L+ +R GP ++++PTRELA Q+ + K + F + + GG
Sbjct: 63 LFPNGVPDKSQRHGPRQP-RVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNP 121
Query: 181 MEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ 240
+ +++LV PGRLL + + D S ++IL+LDEADR+LD+GF + ++++
Sbjct: 122 QVQAMSRGVDVLVACPGRLLDLAGQG-SVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180
Query: 241 LPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLD 300
LP RQ LFSAT + + LA L +P+ + V + T R++Q + K
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTV--ERIEQRVFRLAANHKRS 238
Query: 301 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF- 359
+L I ++LVF + + E K G+ + ++G Q+ R A F
Sbjct: 239 LLAHLITVGAWEQVLVFTRTKHGANRLAEYLDK--HGLAAVAIHGNKSQNARTKALADFK 296
Query: 360 CEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTP 419
++ TD+A+RGLD ++ + VV + P Y+HR+GRT R G ++ + P
Sbjct: 297 AGDVRIMVATDIAARGLDIDQ-LPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAP 355
Query: 420 TEMKML---EKLREAKI 433
E K+L E++ + KI
Sbjct: 356 DEEKLLKSIERMTKQKI 372
>ZFIN|ZDB-GENE-030131-925 [details] [associations]
symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
Length = 617
Score = 448 (162.8 bits), Expect = 5.6e-41, P = 5.6e-41
Identities = 130/396 (32%), Positives = 200/396 (50%)
Query: 49 EPIGRIGEDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILG 108
+PI + E +F KYV D + TK D T IQ P +L G+D++G
Sbjct: 93 KPIVKFHEANFPKYV----MDVI-----TKQNWTDP-----TPIQAQGWPVALSGKDMVG 138
Query: 109 AAKTGSGKTLAFVIPVLEKLYKERWGPE-DGVGSIIISPTRELADQLFDVLKAVGKHHNF 167
A+TGSGKTL++++P + + + + DG ++++PTRELA Q+ V GK
Sbjct: 139 IAQTGSGKTLSYLLPAIVHINHQPFLEHGDGPICLVLAPTRELAQQVQQVAAEYGKASRI 198
Query: 168 SAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILD 227
+ + GG ++ + I + TPGRL+ + E + + L+LDEADR+LD
Sbjct: 199 KSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL-EAGKTNLRRCTYLVLDEADRMLD 257
Query: 228 VGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQ 287
+GF+ + IV Q+ RQT ++SAT K V+ LA LK+ ++V ++A N LQ
Sbjct: 258 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYIQINVGALQLSANHNILQ 317
Query: 288 QTAMIVP--LEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG 345
+ E KL L I + +K ++F+ + ++ + + R G P M ++G
Sbjct: 318 IVDVCNDGEKEDKLIRLLEEIMSEKENKTIIFVETKRRCDDLTRRMR--RDGWPAMGIHG 375
Query: 346 RMKQDRRMAIYAQF-CEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRT 404
Q R + +F K +L TDVASRGLD V +V+ D P + YIHR+GRT
Sbjct: 376 DKNQQERDWVLNEFKYGKAPILIATDVASRGLDVED-VKFVINFDYPNNSEDYIHRIGRT 434
Query: 405 ARYNSGGRSVLFLTPTEMK----MLEKLREAKIPIH 436
AR G + F TP MK ++ LREA I+
Sbjct: 435 ARSQKTGTAYTFFTPNNMKQAHDLVSVLREANQAIN 470
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 439 (159.6 bits), Expect = 6.3e-41, P = 6.3e-41
Identities = 116/361 (32%), Positives = 188/361 (52%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
FD L + ++ + F K T IQ + P+ L G+D++G A+TGSGKT AF +P +
Sbjct: 116 FDYLSLDSSIQAEISK--FPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISH 173
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
L ++ + G+ ++ISPTRELA Q++D L + + GG D ++ +
Sbjct: 174 LMNDQ--KKRGIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPK-DEQRIQLK 230
Query: 188 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP-KHRQ 246
+ ++V TPGRLL + E + D SQ+ L+LDEADR+L+ GF++ + I+ + RQ
Sbjct: 231 KSQVVVATPGRLLDLLQEG-SVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQ 289
Query: 247 TFLFSATQTKSVQDLARLSLKDPQYLSV-HEESVTATPNRLQQTAMIVPLEQKLDMLWSF 305
T +F+AT K V++LA + +P +S+ + + +TA Q ++ P ++ +L
Sbjct: 290 TLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELL 349
Query: 306 IKAHL----NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 361
K H N K+L+F K+ V K G + ++G + Q +R +F
Sbjct: 350 KKYHSGPKKNEKVLIFALYKKEAARVERNLKY--NGYNVAAIHGDLSQQQRTQALNEFKS 407
Query: 362 -KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 420
K ++L TDVA+RGLD V V+ + P V Y+HR+GRT R G + T
Sbjct: 408 GKSNLLLATDVAARGLDIPN-VKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQ 466
Query: 421 E 421
E
Sbjct: 467 E 467
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 442 (160.7 bits), Expect = 8.8e-41, P = 8.8e-41
Identities = 118/359 (32%), Positives = 187/359 (52%)
Query: 86 FVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPE-DGVGSIII 144
F + T IQ P +L G D++G A+TGSGKTL++++P + + + + DG +++
Sbjct: 110 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL 169
Query: 145 SPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMD 204
+PTRELA Q+ V + + + GG ++ + I + TPGRL+ +
Sbjct: 170 APTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL- 228
Query: 205 ETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARL 264
E + + L+LDEADR+LD+GF+ + IV Q+ RQT ++SAT K V+ LA
Sbjct: 229 EAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAED 288
Query: 265 SLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ--KLDMLWSFIKAHLNSKILVFLTSCK 322
LK+ ++++ ++A N LQ + +E+ KL L I + +K +VF+ + +
Sbjct: 289 FLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVETKR 348
Query: 323 QVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKA 381
+ + K R G P M ++G Q R + +F K +L TDVASRGLD
Sbjct: 349 RCDDLTR--KMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVED- 405
Query: 382 VDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK----MLEKLREAKIPIH 436
V +V+ D P YIHR+GRTAR G + F TP +K ++ LREA I+
Sbjct: 406 VKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLISVLREANQAIN 464
>UNIPROTKB|F1MBQ8 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
of intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
Length = 614
Score = 445 (161.7 bits), Expect = 1.3e-40, P = 1.3e-40
Identities = 120/360 (33%), Positives = 189/360 (52%)
Query: 86 FVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPE-DGVGSIII 144
F + T IQ P +L G D++G A+TGSGKTL++++P + + + + DG +++
Sbjct: 114 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL 173
Query: 145 SPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMD 204
+PTRELA Q+ V + + + GG ++ + I + TPGRL+ +
Sbjct: 174 APTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL- 232
Query: 205 ETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARL 264
E + + L+LDEADR+LD+GF+ + IV Q+ RQT ++SAT K V+ LA
Sbjct: 233 ECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAED 292
Query: 265 SLKDPQYLSVHEESVTATPNRLQQTAMI--VPLEQKLDMLWSFIKAHLNSKILVFLTSCK 322
LKD ++++ ++A N LQ + V ++KL L I + +K +VF+ + +
Sbjct: 293 FLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKR 352
Query: 323 QVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNK 380
+ E +K+R G P M ++G Q R + +F K +L TDVASRGLD
Sbjct: 353 RCD---ELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVED 409
Query: 381 AVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK----MLEKLREAKIPIH 436
V +V+ D P YIHR+GRTAR G + F TP +K ++ LREA I+
Sbjct: 410 -VKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAIN 468
>UNIPROTKB|J3KTA4 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
Ensembl:ENST00000578804 Uniprot:J3KTA4
Length = 614
Score = 445 (161.7 bits), Expect = 1.3e-40, P = 1.3e-40
Identities = 120/360 (33%), Positives = 189/360 (52%)
Query: 86 FVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPE-DGVGSIII 144
F + T IQ P +L G D++G A+TGSGKTL++++P + + + + DG +++
Sbjct: 114 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL 173
Query: 145 SPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMD 204
+PTRELA Q+ V + + + GG ++ + I + TPGRL+ +
Sbjct: 174 APTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL- 232
Query: 205 ETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARL 264
E + + L+LDEADR+LD+GF+ + IV Q+ RQT ++SAT K V+ LA
Sbjct: 233 ECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAED 292
Query: 265 SLKDPQYLSVHEESVTATPNRLQQTAMI--VPLEQKLDMLWSFIKAHLNSKILVFLTSCK 322
LKD ++++ ++A N LQ + V ++KL L I + +K +VF+ + +
Sbjct: 293 FLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKR 352
Query: 323 QVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNK 380
+ E +K+R G P M ++G Q R + +F K +L TDVASRGLD
Sbjct: 353 RCD---ELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVED 409
Query: 381 AVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK----MLEKLREAKIPIH 436
V +V+ D P YIHR+GRTAR G + F TP +K ++ LREA I+
Sbjct: 410 -VKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAIN 468
>UNIPROTKB|P17844 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0045069 "regulation of viral genome replication"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
[GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IMP] [GO:0072332
"intrinsic apoptotic signaling pathway by p53 class mediator"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
"regulation of skeletal muscle cell differentiation" evidence=ISS]
[GO:0045667 "regulation of osteoblast differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0050681
"androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
"positive regulation of intracellular estrogen receptor signaling
pathway" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
"pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
Length = 614
Score = 445 (161.7 bits), Expect = 1.3e-40, P = 1.3e-40
Identities = 120/360 (33%), Positives = 189/360 (52%)
Query: 86 FVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPE-DGVGSIII 144
F + T IQ P +L G D++G A+TGSGKTL++++P + + + + DG +++
Sbjct: 114 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL 173
Query: 145 SPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMD 204
+PTRELA Q+ V + + + GG ++ + I + TPGRL+ +
Sbjct: 174 APTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL- 232
Query: 205 ETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARL 264
E + + L+LDEADR+LD+GF+ + IV Q+ RQT ++SAT K V+ LA
Sbjct: 233 ECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAED 292
Query: 265 SLKDPQYLSVHEESVTATPNRLQQTAMI--VPLEQKLDMLWSFIKAHLNSKILVFLTSCK 322
LKD ++++ ++A N LQ + V ++KL L I + +K +VF+ + +
Sbjct: 293 FLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKR 352
Query: 323 QVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNK 380
+ E +K+R G P M ++G Q R + +F K +L TDVASRGLD
Sbjct: 353 RCD---ELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVED 409
Query: 381 AVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK----MLEKLREAKIPIH 436
V +V+ D P YIHR+GRTAR G + F TP +K ++ LREA I+
Sbjct: 410 -VKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAIN 468
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 445 (161.7 bits), Expect = 1.3e-40, P = 1.3e-40
Identities = 120/360 (33%), Positives = 189/360 (52%)
Query: 86 FVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPE-DGVGSIII 144
F + T IQ P +L G D++G A+TGSGKTL++++P + + + + DG +++
Sbjct: 114 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL 173
Query: 145 SPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMD 204
+PTRELA Q+ V + + + GG ++ + I + TPGRL+ +
Sbjct: 174 APTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL- 232
Query: 205 ETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARL 264
E + + L+LDEADR+LD+GF+ + IV Q+ RQT ++SAT K V+ LA
Sbjct: 233 ECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAED 292
Query: 265 SLKDPQYLSVHEESVTATPNRLQQTAMI--VPLEQKLDMLWSFIKAHLNSKILVFLTSCK 322
LKD ++++ ++A N LQ + V ++KL L I + +K +VF+ + +
Sbjct: 293 FLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKR 352
Query: 323 QVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNK 380
+ E +K+R G P M ++G Q R + +F K +L TDVASRGLD
Sbjct: 353 RCD---ELTRKMRRDGWPAMGIHGDKSQQERGWVLNEFKHGKAPILIATDVASRGLDVED 409
Query: 381 AVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK----MLEKLREAKIPIH 436
V +V+ D P YIHR+GRTAR G + F TP +K ++ LREA I+
Sbjct: 410 -VKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAIN 468
>UNIPROTKB|Q5R4I9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
Uniprot:Q5R4I9
Length = 614
Score = 445 (161.7 bits), Expect = 1.3e-40, P = 1.3e-40
Identities = 120/360 (33%), Positives = 189/360 (52%)
Query: 86 FVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPE-DGVGSIII 144
F + T IQ P +L G D++G A+TGSGKTL++++P + + + + DG +++
Sbjct: 114 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL 173
Query: 145 SPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMD 204
+PTRELA Q+ V + + + GG ++ + I + TPGRL+ +
Sbjct: 174 APTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL- 232
Query: 205 ETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARL 264
E + + L+LDEADR+LD+GF+ + IV Q+ RQT ++SAT K V+ LA
Sbjct: 233 ECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAED 292
Query: 265 SLKDPQYLSVHEESVTATPNRLQQTAMI--VPLEQKLDMLWSFIKAHLNSKILVFLTSCK 322
LKD ++++ ++A N LQ + V ++KL L I + +K +VF+ + +
Sbjct: 293 FLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKR 352
Query: 323 QVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNK 380
+ E +K+R G P M ++G Q R + +F K +L TDVASRGLD
Sbjct: 353 RCD---ELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVED 409
Query: 381 AVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK----MLEKLREAKIPIH 436
V +V+ D P YIHR+GRTAR G + F TP +K ++ LREA I+
Sbjct: 410 -VKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAIN 468
>MGI|MGI:105037 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
differentiation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0060765 "regulation of androgen receptor signaling pathway"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
Length = 614
Score = 445 (161.7 bits), Expect = 1.3e-40, P = 1.3e-40
Identities = 120/360 (33%), Positives = 189/360 (52%)
Query: 86 FVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPE-DGVGSIII 144
F + T IQ P +L G D++G A+TGSGKTL++++P + + + + DG +++
Sbjct: 114 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL 173
Query: 145 SPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMD 204
+PTRELA Q+ V + + + GG ++ + I + TPGRL+ +
Sbjct: 174 APTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL- 232
Query: 205 ETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARL 264
E + + L+LDEADR+LD+GF+ + IV Q+ RQT ++SAT K V+ LA
Sbjct: 233 ECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAED 292
Query: 265 SLKDPQYLSVHEESVTATPNRLQQTAMI--VPLEQKLDMLWSFIKAHLNSKILVFLTSCK 322
LKD ++++ ++A N LQ + V ++KL L I + +K +VF+ + +
Sbjct: 293 FLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKR 352
Query: 323 QVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNK 380
+ E +K+R G P M ++G Q R + +F K +L TDVASRGLD
Sbjct: 353 RCD---ELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVED 409
Query: 381 AVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK----MLEKLREAKIPIH 436
V +V+ D P YIHR+GRTAR G + F TP +K ++ LREA I+
Sbjct: 410 -VKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAIN 468
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 436 (158.5 bits), Expect = 1.4e-40, P = 1.4e-40
Identities = 119/371 (32%), Positives = 197/371 (53%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F L + +++ GF + T +Q ++P +L GRD+L +A TG+GKT AFVIP L+
Sbjct: 5 FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64
Query: 128 LY---KERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKE 184
L + + GP +I++PTRELA Q+ + +A+ K+ + + GG V + E
Sbjct: 65 LLDFPRRKAGP---ARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGG---VQYQ-E 117
Query: 185 HVNEL----NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ 240
H + L +I+V TPGRLL+++D FDC ++ LILDEADR+LD+GF ++ + ++
Sbjct: 118 HADILATTQDIVVATPGRLLEYID-AERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTE 176
Query: 241 LPKHRQTFLFSAT-QTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP-LEQK 298
+QT LFSAT + + V+ LKDP + V E ++ Q + K
Sbjct: 177 CRWRKQTLLFSATLEGRGVEGFTADLLKDPAH--VDAEPPRRERKKISQWYHRADDMPHK 234
Query: 299 LDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQ 358
+++L + I VFL + +++ + +K + IP + G M QDRR ++
Sbjct: 235 VELLKKILTEQAERSI-VFLKTRERLADLRAELEKAQ--IPCAWIQGEMPQDRRNNAISR 291
Query: 359 FCEKR-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFL 417
F E ++L TDVA+RG+D + V+ D P Y+HR+GRT R G ++ +
Sbjct: 292 FREGDVNILLATDVAARGIDVPD-ISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLV 350
Query: 418 TPTEMKMLEKL 428
+ M+ ++
Sbjct: 351 EAHDQPMMARV 361
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 436 (158.5 bits), Expect = 1.4e-40, P = 1.4e-40
Identities = 119/371 (32%), Positives = 197/371 (53%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F L + +++ GF + T +Q ++P +L GRD+L +A TG+GKT AFVIP L+
Sbjct: 5 FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64
Query: 128 LY---KERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKE 184
L + + GP +I++PTRELA Q+ + +A+ K+ + + GG V + E
Sbjct: 65 LLDFPRRKAGP---ARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGG---VQYQ-E 117
Query: 185 HVNEL----NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ 240
H + L +I+V TPGRLL+++D FDC ++ LILDEADR+LD+GF ++ + ++
Sbjct: 118 HADILATTQDIVVATPGRLLEYID-AERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTE 176
Query: 241 LPKHRQTFLFSAT-QTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP-LEQK 298
+QT LFSAT + + V+ LKDP + V E ++ Q + K
Sbjct: 177 CRWRKQTLLFSATLEGRGVEGFTADLLKDPAH--VDAEPPRRERKKISQWYHRADDMPHK 234
Query: 299 LDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQ 358
+++L + I VFL + +++ + +K + IP + G M QDRR ++
Sbjct: 235 VELLKKILTEQAERSI-VFLKTRERLADLRAELEKAQ--IPCAWIQGEMPQDRRNNAISR 291
Query: 359 FCEKR-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFL 417
F E ++L TDVA+RG+D + V+ D P Y+HR+GRT R G ++ +
Sbjct: 292 FREGDVNILLATDVAARGIDVPD-ISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLV 350
Query: 418 TPTEMKMLEKL 428
+ M+ ++
Sbjct: 351 EAHDQPMMARV 361
>RGD|619906 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IDA] [GO:0030331 "estrogen receptor binding"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
"pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=IDA] [GO:0050681 "androgen receptor binding"
evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
signaling pathway by p53 class mediator" evidence=IEA;ISO]
[GO:2001014 "regulation of skeletal muscle cell differentiation"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
Genevestigator:Q6AYI1 Uniprot:Q6AYI1
Length = 615
Score = 445 (161.7 bits), Expect = 1.5e-40, P = 1.5e-40
Identities = 120/360 (33%), Positives = 189/360 (52%)
Query: 86 FVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPE-DGVGSIII 144
F + T IQ P +L G D++G A+TGSGKTL++++P + + + + DG +++
Sbjct: 114 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL 173
Query: 145 SPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMD 204
+PTRELA Q+ V + + + GG ++ + I + TPGRL+ +
Sbjct: 174 APTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL- 232
Query: 205 ETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARL 264
E + + L+LDEADR+LD+GF+ + IV Q+ RQT ++SAT K V+ LA
Sbjct: 233 ECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAED 292
Query: 265 SLKDPQYLSVHEESVTATPNRLQQTAMI--VPLEQKLDMLWSFIKAHLNSKILVFLTSCK 322
LKD ++++ ++A N LQ + V ++KL L I + +K +VF+ + +
Sbjct: 293 FLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKR 352
Query: 323 QVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNK 380
+ E +K+R G P M ++G Q R + +F K +L TDVASRGLD
Sbjct: 353 RCD---ELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVED 409
Query: 381 AVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK----MLEKLREAKIPIH 436
V +V+ D P YIHR+GRTAR G + F TP +K ++ LREA I+
Sbjct: 410 -VKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAIN 468
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 435 (158.2 bits), Expect = 1.8e-40, P = 1.8e-40
Identities = 120/374 (32%), Positives = 201/374 (53%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
FD L +S + + G+ + T IQ+ ++P L GRD++ +A+TG+GKT F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 128 LYKERWGPEDG--VGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRR-DVDMEKE 184
L + + V ++I++PTRELA Q+ + ++ K+ N + ++ GG + M K
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 185 HVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKH 244
+++LV TPGRLL ++ Q++IL+LDEADR+LD+GF + ++++LP
Sbjct: 123 R-GGVDVLVATPGRLLD-LEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180
Query: 245 RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWS 304
RQ LFSAT + ++ LA L +P + V + TA+ +++ Q V ++K ++L
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN-TAS-DQVTQHVHFVDKKRKRELLSH 238
Query: 305 FIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR- 363
I ++LVF + ++ E K GI ++G Q R A F
Sbjct: 239 MIGKGNWQQVLVFTRTKHGANHLAEQLNK--DGIRSAAIHGNKSQGARTRALADFKSGDI 296
Query: 364 SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 423
VL TD+A+RGLD + + VV + P Y+HR+GRT R + G ++ + E K
Sbjct: 297 RVLVATDIAARGLDIEE-LPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHK 355
Query: 424 ML---EKLREAKIP 434
+L EKL + +IP
Sbjct: 356 LLRDIEKLLKKEIP 369
>SGD|S000001212 [details] [associations]
symbol:DBP8 "ATPase, putative RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001212 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:U00027 GO:GO:0030686
GO:GO:0004004 GO:GO:0000447 GO:GO:0000472 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
OrthoDB:EOG4PP1RW PIR:S48908 RefSeq:NP_012039.1
ProteinModelPortal:P38719 SMR:P38719 DIP:DIP-5628N IntAct:P38719
MINT:MINT-485349 STRING:P38719 PaxDb:P38719 PeptideAtlas:P38719
EnsemblFungi:YHR169W GeneID:856574 KEGG:sce:YHR169W CYGD:YHR169w
GeneTree:ENSGT00700000105515 OMA:FRNLCAI NextBio:982426
Genevestigator:P38719 GermOnline:YHR169W GO:GO:0000480
Uniprot:P38719
Length = 431
Score = 435 (158.2 bits), Expect = 1.8e-40, P = 1.8e-40
Identities = 124/388 (31%), Positives = 193/388 (49%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F L +SK L+ + T IQ+A +P L GRD +G AKTGSGKT+AF P+L K
Sbjct: 4 FKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTK 63
Query: 128 LYKERWGPE-DGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV 186
W + G+ ++++PTRELA Q+ + A+G N +++GG V +
Sbjct: 64 -----WSEDPSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQ 118
Query: 187 NELNILVCTPGRLLQHM----DETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP 242
+ + ++ TPGRL H+ D+T + + L+LDEAD +L F L +S LP
Sbjct: 119 RKPHFIIATPGRLAHHIMSSGDDTVG-GLMRAKYLVLDEADILLTSTFADHLATCISALP 177
Query: 243 KH--RQTFLFSATQTKSVQDLARLSLKD--PQYLSVHEESV--TATPNRLQQTAMIVPLE 296
RQT LF+AT T V+ L ++ P + ESV A P+ L+ ++VP
Sbjct: 178 PKDKRQTLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILVPEH 237
Query: 297 QKLDMLWSFI--KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMA 354
K L+ + + + N ++F+ + + K+L + + L+ +M Q R
Sbjct: 238 VKEAYLYQLLTCEEYENKTAIIFVNRTMTAEILRRTLKQLE--VRVASLHSQMPQQERTN 295
Query: 355 IYAQF-CEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRS 413
+F +L TDVASRGLD V+ VV D P D +IHR GRTAR G +
Sbjct: 296 SLHRFRANAARILIATDVASRGLDI-PTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDA 354
Query: 414 VLFLTPTEMKMLEKLREAKIPIHFTKAN 441
+ F+T ++ ++ + E +I T+ N
Sbjct: 355 ISFVTQRDVSRIQAI-EDRINKKMTETN 381
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 457 (165.9 bits), Expect = 2.7e-40, P = 2.7e-40
Identities = 123/379 (32%), Positives = 189/379 (49%)
Query: 47 KKEPIGRIGEDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDI 106
K+ + GE+ + Y+ F+ + + L AGF T IQ + P +L RDI
Sbjct: 419 KQHEVTTTGENIPAPYI---TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDI 475
Query: 107 LGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHN 166
+ AKTGSGKTL ++IP L R +G +I++PTRELA Q+ D G+
Sbjct: 476 VAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSR 535
Query: 167 FSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRIL 226
S L GG KE +I+V TPGRL + E D Q+ +L+LDEADR+L
Sbjct: 536 ISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDIL-EMKMIDFQQVSLLVLDEADRML 594
Query: 227 DVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRL 286
D+GF+ + IV+++P RQT +++AT K V+ +A L +P +++ A +
Sbjct: 595 DMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAI 654
Query: 287 QQTAMIVPLEQKLDMLWSFIKAH-LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG 345
Q +VP +K L +++ SK+++F C + + + + ++G
Sbjct: 655 TQYVEVVPQMEKERRLEQILRSQERGSKVIIF---CSTKRLCDHLARSVGRHFGAVVIHG 711
Query: 346 RMKQDRRMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRT 404
Q R + QF +S VL TDVA+RGLD K + V+ D P V Y+HR+GRT
Sbjct: 712 DKTQGERDWVLNQFRSGKSCVLIATDVAARGLDI-KDIRVVINYDFPTGVEDYVHRIGRT 770
Query: 405 ARYNSGGRSVLFLTPTEMK 423
R + G + F T + K
Sbjct: 771 GRAGATGVAFTFFTEQDWK 789
>CGD|CAL0006152 [details] [associations]
symbol:DHH1 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0030996 "cell cycle arrest
in response to nitrogen starvation" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IEA] [GO:0000753 "cell
morphogenesis involved in conjugation with cellular fusion"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0000290 "deadenylation-dependent
decapping of nuclear-transcribed mRNA" evidence=IEA] [GO:0031142
"induction of conjugation upon nitrogen starvation" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0006152 GO:GO:0005524 GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037 eggNOG:COG0513
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_718704.1
RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3 SMR:Q5AAW3
GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 433 (157.5 bits), Expect = 3.0e-40, P = 3.0e-40
Identities = 118/367 (32%), Positives = 197/367 (53%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F+ + ++ G+ +AGF K + IQ S+P +L GRDIL AK G+GKT +F+IP L+
Sbjct: 32 FEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQ- 90
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGR--RDVDMEKEH 185
L K + V ++I+ PTRELA Q V++ +GKH + GG RD D+ + H
Sbjct: 91 LVKPKLNK---VQALILVPTRELALQTSQVVRTLGKHVGTQCMVTTGGTSLRD-DIVRLH 146
Query: 186 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHR 245
+ ++ILV TPGR+L + D S+ + ++DEAD++L FK + I+ P +R
Sbjct: 147 -DPVHILVGTPGRVLD-LAARKVVDLSECPLFVMDEADKMLSREFKGIIEQILEFFPPNR 204
Query: 246 QTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWS- 304
Q LFSAT +V+ L P +++ +E T + Q V +QKL L +
Sbjct: 205 QALLFSATFPLAVKSFMDKHLTKPYEINLMDE---LTLKGISQFYAFVEEKQKLHCLNTL 261
Query: 305 FIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KR 363
F K +N I +F S +V+ + + +L G + +M Q R ++ +F + K
Sbjct: 262 FSKLQINQSI-IFCNSTNRVELLAKKITEL--GYSCYYSHAKMPQQARNKVFHEFRQGKV 318
Query: 364 SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 423
L C+D+ +RG+D +AV+ V+ D P+ +Y+HR+GR+ R+ G ++ ++ +
Sbjct: 319 RNLVCSDLLTRGIDI-QAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRY 377
Query: 424 MLEKLRE 430
L K+ +
Sbjct: 378 SLYKIEQ 384
>DICTYBASE|DDB_G0293064 [details] [associations]
symbol:DDB_G0293064 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0293064 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AAFI02000199
RefSeq:XP_629301.1 ProteinModelPortal:Q54CB8
EnsemblProtists:DDB0191757 GeneID:8629024 KEGG:ddi:DDB_G0293064
InParanoid:Q54CB8 OMA:VLYWSAT Uniprot:Q54CB8
Length = 573
Score = 433 (157.5 bits), Expect = 3.0e-40, P = 3.0e-40
Identities = 110/365 (30%), Positives = 183/365 (50%)
Query: 69 DQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKL 128
+ +P K+ L F K T +Q P +L G D+LG +KTGSGKTL+F++P +E +
Sbjct: 143 ESVPFQSTIKNFLSKK-FEKPTPVQSLGWPIALSGSDMLGISKTGSGKTLSFILPAIEHI 201
Query: 129 YKE-RWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
+ R G ++++PTRELA+Q+ + + N + GG + +
Sbjct: 202 LAQPRQSYYPGPSVLVVAPTRELANQINQEAEQYLRLVNIEIATIYGGAPRRSQQLQLSR 261
Query: 188 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQT 247
I+V TPGR++ M E+ + + L++DEADR++++GF++ ++ I + + RQ
Sbjct: 262 RPKIVVGTPGRIIDFM-ESGDLSLKNISFLVVDEADRLMEMGFEQQIDGIFNSIRPDRQV 320
Query: 248 FLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLE-QKLDMLWSFI 306
+SAT K V A ++ P L + +TA N + Q IVP + K+D L +
Sbjct: 321 LYWSATWPKKVSSFAEKHIRTPIRLQIGSSQLTANKN-ISQKFKIVPTDADKVDALMDTL 379
Query: 307 ----KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK 362
A ++ L+F + K + + + + L+G + Q+RR I F K
Sbjct: 380 GEIYSADEKAQTLIFTMTKKGADTLKHYIQSNGDNVRIDTLHGDVDQNRRERIVQDFKNK 439
Query: 363 R-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 421
R ++ TDVASRGLD K + V+ P D +Y+HR+GRT R + G S L+
Sbjct: 440 RLDIVVATDVASRGLDI-KGISHVINFSLPSDCETYVHRIGRTGRAGALGTSHSILSNNS 498
Query: 422 MKMLE 426
+ +E
Sbjct: 499 LDDME 503
>UNIPROTKB|Q5AAW3 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:237561 "Candida albicans SC5314" [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0006152 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037
eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_718704.1 RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3
SMR:Q5AAW3 GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 433 (157.5 bits), Expect = 3.0e-40, P = 3.0e-40
Identities = 118/367 (32%), Positives = 197/367 (53%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F+ + ++ G+ +AGF K + IQ S+P +L GRDIL AK G+GKT +F+IP L+
Sbjct: 32 FEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQ- 90
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGR--RDVDMEKEH 185
L K + V ++I+ PTRELA Q V++ +GKH + GG RD D+ + H
Sbjct: 91 LVKPKLNK---VQALILVPTRELALQTSQVVRTLGKHVGTQCMVTTGGTSLRD-DIVRLH 146
Query: 186 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHR 245
+ ++ILV TPGR+L + D S+ + ++DEAD++L FK + I+ P +R
Sbjct: 147 -DPVHILVGTPGRVLD-LAARKVVDLSECPLFVMDEADKMLSREFKGIIEQILEFFPPNR 204
Query: 246 QTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWS- 304
Q LFSAT +V+ L P +++ +E T + Q V +QKL L +
Sbjct: 205 QALLFSATFPLAVKSFMDKHLTKPYEINLMDE---LTLKGISQFYAFVEEKQKLHCLNTL 261
Query: 305 FIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KR 363
F K +N I +F S +V+ + + +L G + +M Q R ++ +F + K
Sbjct: 262 FSKLQINQSI-IFCNSTNRVELLAKKITEL--GYSCYYSHAKMPQQARNKVFHEFRQGKV 318
Query: 364 SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 423
L C+D+ +RG+D +AV+ V+ D P+ +Y+HR+GR+ R+ G ++ ++ +
Sbjct: 319 RNLVCSDLLTRGIDI-QAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRY 377
Query: 424 MLEKLRE 430
L K+ +
Sbjct: 378 SLYKIEQ 384
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 431 (156.8 bits), Expect = 5.0e-40, P = 5.0e-40
Identities = 117/394 (29%), Positives = 205/394 (52%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F++ ++ + + G+ K+T +Q+ S+P GRD++ A+TGSGKT AF++P++++
Sbjct: 169 FEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVDR 228
Query: 128 LYKE-----RWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDME 182
+ K+ + + II++PTREL +Q+F + ++ GG +
Sbjct: 229 MMKDGVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFVYGTCIRPVVIYGGTQTGHSI 288
Query: 183 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVS--Q 240
++ + NIL TPGRLL + E +++ L+LDEADR+LD+GF + ++S +
Sbjct: 289 RQIMQGCNILCATPGRLLDII-EKGKISLVEVKYLVLDEADRMLDMGFGLDMKKLISYPE 347
Query: 241 LPK--HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK 298
+P RQT +FSAT + VQ LA LK Y+ + + + +QQ + VP K
Sbjct: 348 MPSKDRRQTLMFSATFPEEVQRLAGEFLKT-DYIFLVIGNTCGACSDVQQNILQVPRLSK 406
Query: 299 LDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG-RMKQDRRMAIYA 357
D L +++ + +VF+ + K+ Y+ AF + +P ++G R +++R +A+
Sbjct: 407 RDKLIEILQSTGGERTMVFVDTKKKADYL-AAFL-CQENLPSTSIHGDREQREREIALRD 464
Query: 358 QFCEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFL 417
K +L T VASRGLD V V+ D P + Y+HR+GRT R + G++V F
Sbjct: 465 FRSGKCQILVATSVASRGLDIEN-VQHVINFDLPNTIEDYVHRIGRTGRCGNTGKAVSFF 523
Query: 418 TPTE-----MKMLEKLREAK--IPIHFTKANTKR 444
+L+ L EA+ +P+ + +R
Sbjct: 524 DDQSDGHLVQSLLKVLSEAQQEVPVWLEEMAVQR 557
>CGD|CAL0003464 [details] [associations]
symbol:orf19.5991 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
CGD:CAL0003464 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000003
EMBL:AACQ01000004 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_723054.1
RefSeq:XP_723201.1 STRING:Q5ANB2 GeneID:3635229 GeneID:3635325
KEGG:cal:CaO19.13412 KEGG:cal:CaO19.5991 KO:K14808 Uniprot:Q5ANB2
Length = 908
Score = 375 (137.1 bits), Expect = 5.8e-40, Sum P(3) = 5.8e-40
Identities = 93/263 (35%), Positives = 148/263 (56%)
Query: 32 KPESGTNPLSFPPLGKKEPIGRIGEDSFS-KYVGSTRFDQLPISKKTKSG---------- 80
K +S NP +FP L + G +D + S + P +KK K+G
Sbjct: 50 KKKSKPNPQAFPSLELSDNEGNNDDDDDDDSKINSYFINNNPTAKKAKAGSFASFGLTKF 109
Query: 81 ----LKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPE 136
+ G+ + T IQR ++P + GRD++G A+TGSGKT AFV+P++E+L + G
Sbjct: 110 ILANIAKKGYKQPTPIQRKTIPLIMEGRDVVGMARTGSGKTAAFVLPLIERLKSRQPG-- 167
Query: 137 DGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRR-DVDMEKEHVNELNILVCT 195
GV ++I+SP+RELA Q + +K N + +LIGG + D K + + +I+VCT
Sbjct: 168 -GVRAVILSPSRELALQTYKQVKEFSHGTNLQSIVLIGGDSLEEDFSKM-MTKPDIIVCT 225
Query: 196 PGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQT 255
PGR L H+ +D +Q ++ DEADR+ ++GF + LN +++ LP +RQ+ LFSAT
Sbjct: 226 PGRFL-HLKVEMQYDLMTVQYIVFDEADRLFEMGFAEQLNELLASLPSNRQSLLFSATLP 284
Query: 256 KSVQDLARLSLKDPQYLSVHEES 278
+S+ D A+ L +P + + ES
Sbjct: 285 RSLVDFAKAGLTNPVLVRLDAES 307
Score = 166 (63.5 bits), Expect = 1.7e-16, Sum P(3) = 1.7e-16
Identities = 48/130 (36%), Positives = 72/130 (55%)
Query: 3 KSKRKPNRKAVRSMEIEEIELLNSWIDSQKPESGTNPLSFPPLGKKEPIGRIGEDSFSKY 62
K K KPN +A S+E+ + E N D + + ++ P KK G SF+ +
Sbjct: 50 KKKSKPNPQAFPSLELSDNEGNNDDDDDDDSKINSYFINNNPTAKKAKAG-----SFASF 104
Query: 63 VGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVI 122
G T+F I+KK G+ + T IQR ++P + GRD++G A+TGSGKT AFV+
Sbjct: 105 -GLTKFILANIAKK--------GYKQPTPIQRKTIPLIMEGRDVVGMARTGSGKTAAFVL 155
Query: 123 PVLEKLYKER 132
P++E+L K R
Sbjct: 156 PLIERL-KSR 164
Score = 115 (45.5 bits), Expect = 5.8e-40, Sum P(3) = 5.8e-40
Identities = 35/112 (31%), Positives = 54/112 (48%)
Query: 315 LVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-CEKRSVLFCTDVAS 373
+VF+ + V+YV + + G + +YG + Q R QF +VL TDVA+
Sbjct: 398 IVFVPTKHHVEYVTKLLRDA--GYLVSYIYGTLDQHARKNQLYQFRVGLTNVLVVTDVAA 455
Query: 374 RGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 425
RG+D + V+ P +IHRVGRTAR + G + + E+ L
Sbjct: 456 RGIDIPVLAN-VINFTLPASSKIFIHRVGRTARAGNKGWAYSIVNEKELPYL 506
Score = 57 (25.1 bits), Expect = 5.8e-40, Sum P(3) = 5.8e-40
Identities = 23/129 (17%), Positives = 59/129 (45%)
Query: 508 IRFLNQKKGKMVPVKPVLDNAEKEDKLMISREKL--LPDNFTEENVDRDILETKDIEDEG 565
+ F+N+++ ++ P++ KE K ++++E+L L +E + D ++++
Sbjct: 655 VEFMNRRRRQLAPIQ----RKAKERKELLAKERLAGLTHGIEDEILRADGENGYGVDEDE 710
Query: 566 KADLLEDVMRATRVKKNKKLKINVHRPLGTRLVFDEECNTVPPLAMLADTKNANVSLDQD 625
+ ED + + + + ++ + P ++ D++ + A A A LD D
Sbjct: 711 LQEAFEDADKKKSFR-DPQFFLSHYAPAS--VIQDQQLSLSTSFANEAQA--ATFDLDND 765
Query: 626 QKTEYYKKI 634
K + K++
Sbjct: 766 DKIQTNKQV 774
Score = 57 (25.1 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 696 KAKIYFDSDSDNDNDERKQNK 716
K KI DS+ D+D++ERK+ K
Sbjct: 355 KRKIDSDSEDDDDDEERKKGK 375
Score = 49 (22.3 bits), Expect = 3.9e-39, Sum P(3) = 3.9e-39
Identities = 21/79 (26%), Positives = 35/79 (44%)
Query: 509 RFLN-QKKGKMVPVKPVLDNAEKEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKA 567
RF + Q++ +P K D+ K+ K + EK + + E K E KA
Sbjct: 834 RFKHKQQRAPKLPDK-FRDDYHKQKKKV---EKAIESGVNVKGFHTPQQEIKSTEQIRKA 889
Query: 568 DLLEDVMRATRVKKNKKLK 586
LL++ +A + +KK K
Sbjct: 890 RLLKEKRKAKNARPSKKRK 908
Score = 48 (22.0 bits), Expect = 5.0e-39, Sum P(3) = 5.0e-39
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 513 QKKGKMVPVKPVLDNAEKEDKLMISREKLLPDNFTEENVDRDILETKDIED----EGKAD 568
+K+ + P V D++ K K R LPD F ++ + K IE +G
Sbjct: 816 RKQRNLKPTSTVEDDSNKRFKHKQQRAPKLPDKFRDDYHKQKKKVEKAIESGVNVKGFHT 875
Query: 569 LLEDVMRATRVKKNKKLK 586
+++ +++K + LK
Sbjct: 876 PQQEIKSTEQIRKARLLK 893
Score = 46 (21.3 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 19/73 (26%), Positives = 32/73 (43%)
Query: 127 KLYKERWGPEDGVGS----IIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDME 182
K KER P + + S I+ PT+ + + +L+ G ++ G L R +
Sbjct: 379 KFKKERLPPANRLPSPHSTIVFVPTKHHVEYVTKLLRDAGYLVSYIYGTLDQHARKNQLY 438
Query: 183 KEHVNELNILVCT 195
+ V N+LV T
Sbjct: 439 QFRVGLTNVLVVT 451
Score = 39 (18.8 bits), Expect = 4.3e-38, Sum P(3) = 4.3e-38
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 416 FLTPT-EMKMLEKLREAKIPIHFTKANTKR 444
F TP E+K E++R+A++ KA R
Sbjct: 873 FHTPQQEIKSTEQIRKARLLKEKRKAKNAR 902
>UNIPROTKB|F1NL04 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
of protein localization" evidence=IEA] [GO:0033391 "chromatoid
body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
Ensembl:ENSGALT00000038830 Uniprot:F1NL04
Length = 542
Score = 430 (156.4 bits), Expect = 6.5e-40, P = 6.5e-40
Identities = 111/359 (30%), Positives = 192/359 (53%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F++ ++ + + G+ K+T +Q+ S+P GRD++ A+TGSGKT AF++P++++
Sbjct: 169 FEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVDR 228
Query: 128 LYKE-----RWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDME 182
+ K+ + + II++PTREL +Q+F + ++ GG +
Sbjct: 229 MMKDGVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFVYGTCIRPVVIYGGTQTGHSI 288
Query: 183 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVS--Q 240
++ + NIL TPGRLL + E +++ L+LDEADR+LD+GF + ++S +
Sbjct: 289 RQIMQGCNILCATPGRLLDII-EKGKISLVEVKYLVLDEADRMLDMGFGLDMKKLISYPE 347
Query: 241 LPK--HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK 298
+P RQT +FSAT + VQ LA LK Y+ + + + +QQ + VP K
Sbjct: 348 MPSKDRRQTLMFSATFPEEVQRLAGEFLKT-DYIFLVIGNTCGACSDVQQNILQVPRLSK 406
Query: 299 LDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG-RMKQDRRMAIYA 357
D L +++ + +VF+ + K+ Y+ AF + +P ++G R +++R +A+
Sbjct: 407 RDKLIEILQSTGGERTMVFVDTKKKADYL-AAFL-CQENLPSTSIHGDREQREREIALRD 464
Query: 358 QFCEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLF 416
K +L T VASRGLD V V+ D P + Y+HR+GRT R + G++V F
Sbjct: 465 FRSGKCQILVATSVASRGLDIEN-VQHVINFDLPNTIEDYVHRIGRTGRCGNTGKAVSF 522
>UNIPROTKB|Q2KEF1 [details] [associations]
symbol:MGCH7_ch7g1085 "Putative uncharacterized protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM000230
GO:GO:0008026 ProteinModelPortal:Q2KEF1 Uniprot:Q2KEF1
Length = 568
Score = 430 (156.4 bits), Expect = 6.5e-40, P = 6.5e-40
Identities = 120/359 (33%), Positives = 189/359 (52%)
Query: 82 KDAGFVKMTDIQRASLPHSLCGR-DILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVG 140
+D F +M+ +Q A++ H + R D+L AKTG+GKT+AF++P L+ L + + V
Sbjct: 93 QDLKFDRMSPVQAATIRHLIADRGDVLAQAKTGTGKTIAFLLPALQTLLRRPSSRGNDVS 152
Query: 141 SIIISPTRELADQLFDVLKAVGKH-HNFSAGLLIGGRRDVDMEKEHV-NELNILVCTPGR 198
++ISPTRELA Q+ +A+ + + IGG D E+ + IL+ TPGR
Sbjct: 153 VLVISPTRELALQIAKEAEALLQRLPQYKVCTAIGGTNK-DAEQRRILRGCQILIGTPGR 211
Query: 199 LLQHMDETPNFDCSQ-LQILILDEADRILDVGFKKALNAIVSQLPKH----RQTFLFSAT 253
L+ H++E + Q + +LDEADR+LD+GF L IV+ LP RQ LFSAT
Sbjct: 212 LMDHLEEQSVAEMLQSVDTFVLDEADRLLDMGFMPQLKKIVAALPNRQKVPRQGMLFSAT 271
Query: 254 QTKSVQDLARLSLK-DPQYLSVHEESVTATPNRLQQTAMIVP-LEQKLDMLWSFIKAHL- 310
+ V ++ ++L D +++S + + T R+ Q + VP + L ++ L
Sbjct: 272 VAEHVAKVSSIALAPDYKFISTIPKGESNTHERVPQHLIEVPNFSDTMAALVGALRHELA 331
Query: 311 ---NS---KILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMKQDRRMAIYAQFCEKR 363
N K +VF + V + + L P +P ++ L+ RM Q +R + + +
Sbjct: 332 ESANQDEFKAIVFAPTAALVDFYAAVLEGL-PNMPRILTLHSRMTQSKRTRVTEDYRKSN 390
Query: 364 S-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 421
+ VL TDV +RG+DF + V QV P D SYIHR+GRTAR + GR ++ E
Sbjct: 391 ATVLVATDVVARGMDFPSVTN-VFQVGLPMDKESYIHRLGRTARAGAEGRGTFIVSAAE 448
WARNING: HSPs involving 648 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.385 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 744 691 0.00081 121 3 11 22 0.41 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 898
No. of states in DFA: 620 (66 KB)
Total size of DFA: 337 KB (2171 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 67.77u 0.11s 67.88t Elapsed: 00:00:09
Total cpu time: 67.84u 0.11s 67.95t Elapsed: 00:00:09
Start: Mon May 20 22:26:19 2013 End: Mon May 20 22:26:28 2013
WARNINGS ISSUED: 2