BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004567
(744 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 285 bits (730), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 133/213 (62%), Positives = 174/213 (81%), Gaps = 1/213 (0%)
Query: 66 TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVL 125
TRF P+SKKT GL++A + +T+IQ+ ++ +L G+D+LGAAKTGSGKTLAF++PVL
Sbjct: 25 TRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVL 84
Query: 126 EKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEH 185
E LY+ +W DG+G +IISPTRELA Q F+VL+ VGK+H+FSAGL+IGG+ D+ E E
Sbjct: 85 EALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGK-DLKHEAER 143
Query: 186 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHR 245
+N +NILVCTPGRLLQHMDET +F + LQ+L+LDEADRILD+GF +NA++ LPK R
Sbjct: 144 INNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKR 203
Query: 246 QTFLFSATQTKSVQDLARLSLKDPQYLSVHEES 278
QT LFSATQTKSV+DLARLSLK+P+Y+ VHE++
Sbjct: 204 QTLLFSATQTKSVKDLARLSLKNPEYVWVHEKA 236
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 208 bits (529), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/202 (52%), Positives = 139/202 (68%), Gaps = 1/202 (0%)
Query: 73 ISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKER 132
+++ T +K+ GF MT+IQ S+ L GRD+L AAKTGSGKTLAF+IP +E + K R
Sbjct: 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLR 120
Query: 133 WGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNIL 192
+ P +G G +I+SPTRELA Q F VLK + HH + GL++GG ++ N +NI+
Sbjct: 121 FMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINII 180
Query: 193 VCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSA 252
V TPGRLL HM TP F LQ L++DEADRILDVGF++ L I+ LP RQT LFSA
Sbjct: 181 VATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSA 240
Query: 253 TQTKSVQDLARLSL-KDPQYLS 273
TQT+ V+DLAR+SL K+P Y+
Sbjct: 241 TQTRKVEDLARISLKKEPLYVG 262
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 129/376 (34%), Positives = 199/376 (52%), Gaps = 23/376 (6%)
Query: 44 PLGKKEPIGRIGEDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCG 103
PLG K+ R D G+T F+ + ++ G+ +AGF K + IQ ++P ++ G
Sbjct: 2 PLGSKDT--RPQTDDVLNTKGNT-FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITG 58
Query: 104 RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGK 163
RDIL AK G+GKT AFVIP LEK+ + + + ++I+ PTRELA Q V++ +GK
Sbjct: 59 RDILARAKNGTGKTAAFVIPTLEKVKPKL----NKIQALIMVPTRELALQTSQVVRTLGK 114
Query: 164 HHNFSAGLLIGG---RRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILD 220
H S + GG R D+ E V +ILV TPGR+L + D S + I+D
Sbjct: 115 HCGISCMVTTGGTNLRDDILRLNETV---HILVGTPGRVLD-LASRKVADLSDCSLFIMD 170
Query: 221 EADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVT 280
EAD++L FK + I+S LP Q+ LFSAT +V++ L P +++ EE
Sbjct: 171 EADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE--- 227
Query: 281 ATPNRLQQTAMIVPLEQKLDMLWS-FIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIP 339
T + Q V QKL L + F K +N I +F S +V+ + + L G
Sbjct: 228 LTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAI-IFCNSTNRVELLAKKITDL--GYS 284
Query: 340 LMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYI 398
+ RMKQ R ++ +F + K L C+D+ +RG+D +AV+ V+ D P+ +Y+
Sbjct: 285 CYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDI-QAVNVVINFDFPKTAETYL 343
Query: 399 HRVGRTARYNSGGRSV 414
HR+GR+ R+ G ++
Sbjct: 344 HRIGRSGRFGHLGLAI 359
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 169 bits (428), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 116/378 (30%), Positives = 207/378 (54%), Gaps = 39/378 (10%)
Query: 86 FVKMTDIQRASLPHSLCG--RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSII 143
F +T +Q+ ++ L D++ AKTG+GKT AF+IP+ + L ++ + V ++I
Sbjct: 41 FPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVI 100
Query: 144 ISPTRELADQLFDVLKAVGKHHNFSAGL-------LIGGRRDVDMEKEHVNEL--NILVC 194
++PTR+LA Q + V K H+ + GL L+GG D +N+L NI++
Sbjct: 101 VAPTRDLALQ---IEAEVKKIHDMNYGLKKYACVSLVGGT-DFRAAMNKMNKLRPNIVIA 156
Query: 195 TPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIV-------SQLPKHRQT 247
TPGRL+ +++ N + +LDEADR+L++GF+ L I S+ + +T
Sbjct: 157 TPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKT 216
Query: 248 FLFSATQTKSVQDLAR--LSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSF 305
LFSAT VQ LA ++ K+ +L +++ R+ Q+ +I E+ + +++
Sbjct: 217 LLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS--EKFANSIFAA 274
Query: 306 IKAHL---------NSKILVFLTSCKQVKYVFEAFK-KLRPGIPLMCLYGRMKQDRRMAI 355
++ H+ N K ++F + K ++ K + + +P++ +G++ Q++R ++
Sbjct: 275 VE-HIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSL 333
Query: 356 YAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSV 414
+F + S +L CTDV +RG+DF V V+Q+ P ++A+YIHR+GRTAR G SV
Sbjct: 334 VKRFKKDESGILVCTDVGARGMDF-PNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSV 392
Query: 415 LFLTPTEMKMLEKLREAK 432
LF+ E+ + +L +AK
Sbjct: 393 LFICKDELPFVRELEDAK 410
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 116/378 (30%), Positives = 207/378 (54%), Gaps = 39/378 (10%)
Query: 86 FVKMTDIQRASLPHSLCG--RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSII 143
F +T +Q+ ++ L D++ AKTG+GKT AF+IP+ + L ++ + V ++I
Sbjct: 92 FPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVI 151
Query: 144 ISPTRELADQLFDVLKAVGKHHNFSAGL-------LIGGRRDVDMEKEHVNEL--NILVC 194
++PTR+LA Q + V K H+ + GL L+GG D +N+L NI++
Sbjct: 152 VAPTRDLALQ---IEAEVKKIHDMNYGLKKYACVSLVGGT-DFRAAMNKMNKLRPNIVIA 207
Query: 195 TPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIV-------SQLPKHRQT 247
TPGRL+ +++ N + +LDEADR+L++GF+ L I S+ + +T
Sbjct: 208 TPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKT 267
Query: 248 FLFSATQTKSVQDLAR--LSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSF 305
LFSAT VQ LA ++ K+ +L +++ R+ Q+ +I E+ + +++
Sbjct: 268 LLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS--EKFANSIFAA 325
Query: 306 IKAHL---------NSKILVFLTSCKQVKYVFEAFK-KLRPGIPLMCLYGRMKQDRRMAI 355
++ H+ N K ++F + K ++ K + + +P++ +G++ Q++R ++
Sbjct: 326 VE-HIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSL 384
Query: 356 YAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSV 414
+F + S +L CTDV +RG+DF V V+Q+ P ++A+YIHR+GRTAR G SV
Sbjct: 385 VKRFKKDESGILVCTDVGARGMDFPN-VHEVLQIGVPSELANYIHRIGRTARSGKEGSSV 443
Query: 415 LFLTPTEMKMLEKLREAK 432
LF+ E+ + +L +AK
Sbjct: 444 LFICKDELPFVRELEDAK 461
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 116/378 (30%), Positives = 206/378 (54%), Gaps = 39/378 (10%)
Query: 86 FVKMTDIQRASLPHSLCG--RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSII 143
F +T +Q+ ++ L D++ AKTG+GKT AF+IP+ + L ++ + V ++I
Sbjct: 41 FPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVI 100
Query: 144 ISPTRELADQLFDVLKAVGKHHNFSAGL-------LIGGRRDVDMEKEHVNEL--NILVC 194
++PTR+LA Q + V K H+ + GL L+GG D +N+L NI++
Sbjct: 101 VAPTRDLALQ---IEAEVKKIHDMNYGLKKYACVSLVGGT-DFRAAMNKMNKLRPNIVIA 156
Query: 195 TPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHR-------QT 247
TPGRL+ +++ N + +LDEADR+L++GF+ L I L + +T
Sbjct: 157 TPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKT 216
Query: 248 FLFSATQTKSVQDLAR--LSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSF 305
LFSAT VQ LA ++ K+ +L +++ R+ Q+ +I E+ + +++
Sbjct: 217 LLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS--EKFANSIFAA 274
Query: 306 IKAHL---------NSKILVFLTSCKQVKYVFEAFK-KLRPGIPLMCLYGRMKQDRRMAI 355
++ H+ N K ++F + K ++ K + + +P++ +G++ Q++R ++
Sbjct: 275 VE-HIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSL 333
Query: 356 YAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSV 414
+F + S +L CTDV +RG+DF V V+Q+ P ++A+YIHR+GRTAR G SV
Sbjct: 334 VKRFKKDESGILVCTDVGARGMDFPN-VHEVLQIGVPSELANYIHRIGRTARSGKEGSSV 392
Query: 415 LFLTPTEMKMLEKLREAK 432
LF+ E+ + +L +AK
Sbjct: 393 LFICKDELPFVRELEDAK 410
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 159 bits (402), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 109/367 (29%), Positives = 191/367 (52%), Gaps = 21/367 (5%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGR-DILGAAKTGSGKTLAFVIPVLE 126
F++L +S + +++ GF K TDIQ +P L +I+ A+TGSGKT +F IP++E
Sbjct: 8 FNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 67
Query: 127 KLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV 186
+ +G+ +II++PTRELA Q+ D ++++ + N + GG+ + + + +
Sbjct: 68 LV-----NENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKA-IYPQIKAL 121
Query: 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246
NI+V TPGR+L H++ + ++ ILDEAD L+ GF K + I++ K ++
Sbjct: 122 KNANIVVGTPGRILDHINRGT-LNLKNVKYFILDEADEXLNXGFIKDVEKILNACNKDKR 180
Query: 247 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFI 306
LFSAT + + +LA+ D ++ + A ++Q+ + V ++ + L +
Sbjct: 181 ILLFSATXPREILNLAKKYXGDYSFIKA---KINAN---IEQSYVEVNENERFEALCRLL 234
Query: 307 KAHLNSKILVFLTSCKQVKYVFEAFKKLRP-GIPLMCLYGRMKQDRRMAIYAQFCEKR-S 364
K +K L CK + E LR G ++G + Q +R + F +K+
Sbjct: 235 K----NKEFYGLVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIR 290
Query: 365 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM 424
+L TDV SRG+D N ++ V+ P++ SY HR+GRT R G+++ + E K
Sbjct: 291 ILIATDVXSRGIDVND-LNCVINYHLPQNPESYXHRIGRTGRAGKKGKAISIINRREYKK 349
Query: 425 LEKLREA 431
L + A
Sbjct: 350 LRYIERA 356
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 114/361 (31%), Positives = 181/361 (50%), Gaps = 21/361 (5%)
Query: 72 PISKKTKSGLKD--------AGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIP 123
PI T + L+D +G+ T IQ+ S+P GRD++ A+TGSGKT AF++P
Sbjct: 54 PIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLP 113
Query: 124 VLEKLYKERWGPEDGVGS-IIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDME 182
+L KL ++ E G +I+SPTRELA Q+F+ + G++ GG
Sbjct: 114 ILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQN 173
Query: 183 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL- 241
+ ++++ TPGRLL +D T + ++LDEADR+LD+GF + + I++ +
Sbjct: 174 ECITRGCHVVIATPGRLLDFVDRT-FITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVT 232
Query: 242 --PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKL 299
P+H QT +FSAT + +Q +A LK+ Y+ V V + ++QT V K
Sbjct: 233 MRPEH-QTLMFSATFPEEIQRMAGEFLKN--YVFVAIGIVGGACSDVKQTIYEVNKYAKR 289
Query: 300 DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG-RMKQDRRMAIYAQ 358
L + + I VF+ + + ++ + P ++G R++ R A+
Sbjct: 290 SKLIEILSEQADGTI-VFVETKRGADFLASFLSEKE--FPTTSIHGDRLQSQREQALRDF 346
Query: 359 FCEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 418
VL T VASRGLD K + V+ D P + Y+HR+GRT R + GR+ F
Sbjct: 347 KNGSMKVLIATSVASRGLDI-KNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFD 405
Query: 419 P 419
P
Sbjct: 406 P 406
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 123/190 (64%), Gaps = 4/190 (2%)
Query: 85 GFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIII 144
G+ K T IQ ++P +L GRDI+G A+TGSGKT AF +P+L L + P+ + ++++
Sbjct: 62 GWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET---PQR-LFALVL 117
Query: 145 SPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMD 204
+PTRELA Q+ + +A+G + +++GG + + +I++ TPGRL+ H++
Sbjct: 118 TPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLE 177
Query: 205 ETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARL 264
T F+ L+ L++DEADRIL++ F+ ++ I+ +P+ R+TFLFSAT TK VQ L R
Sbjct: 178 NTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRA 237
Query: 265 SLKDPQYLSV 274
+LK+P +V
Sbjct: 238 ALKNPVKCAV 247
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/372 (29%), Positives = 180/372 (48%), Gaps = 32/372 (8%)
Query: 86 FVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVG----- 140
+ + T +Q+ ++P RD++ A+TGSGKT AF++P+L ++Y + GP + +
Sbjct: 35 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSD--GPGEALRAMKEN 92
Query: 141 -----------SIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNEL 189
S++++PTRELA Q+++ + ++ GG ++
Sbjct: 93 GRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGC 152
Query: 190 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ--LPKH--R 245
++LV TPGRL+ M E + L+LDEADR+LD+GF+ + IV Q +P R
Sbjct: 153 HLLVATPGRLVDMM-ERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVR 211
Query: 246 QTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSF 305
T +FSAT K +Q LAR L + +L+V V +T + Q + V K L
Sbjct: 212 HTMMFSATFPKEIQMLARDFLDEYIFLAVGR--VGSTSENITQKVVWVEESDKRSFLLDL 269
Query: 306 IKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG-RMKQDRRMAIYAQFCEKRS 364
+ A + + K+ E F G ++G R ++DR A++ K
Sbjct: 270 LNATGKDSLTLVFVETKKGADSLEDF-LYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 328
Query: 365 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK- 423
+L T VA+RGLD + V V+ D P D+ Y+HR+GRT R + G + F +
Sbjct: 329 ILVATAVAARGLDISN-VKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINI 387
Query: 424 ---MLEKLREAK 432
+L+ L EAK
Sbjct: 388 TKDLLDLLVEAK 399
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 182/353 (51%), Gaps = 41/353 (11%)
Query: 73 ISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKER 132
+++K + +++ GF T++Q ++P L G++++ AKTGSGKT A+ IP+LE
Sbjct: 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----- 55
Query: 133 WGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNIL 192
G+ S++++PTREL Q+ ++ +G++ + + GG + V +I+
Sbjct: 56 -----GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGG-MPYKAQINRVRNADIV 109
Query: 193 VCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSA 252
V TPGRLL + D S +I+I+DEAD + ++GF + I++Q + T LFSA
Sbjct: 110 VATPGRLLDLWSKGV-IDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSA 168
Query: 253 TQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDML---W-SFIKA 308
T + ++ + + +++ +EE ++ + +E K + W S ++A
Sbjct: 169 TIPEEIRKVVK------DFITNYEE--------IEACIGLANVEHKFVHVKDDWRSKVQA 214
Query: 309 HLNSK---ILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRS 364
+K ++VF+ + +V + F + L G + Q R F E +
Sbjct: 215 LRENKDKGVIVFVRTRNRVAKLVRLFDN------AIELRGDLPQSVRNRNIDAFREGEYD 268
Query: 365 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFL 417
+L TDVASRGLD V+ V+ D P+D+ +YIHR+GRT R G ++ F+
Sbjct: 269 MLITTDVASRGLDI-PLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFI 320
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/366 (27%), Positives = 186/366 (50%), Gaps = 14/366 (3%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
FD + + + G+ GF K + IQ+ ++ + GRD++ +++G+GKT F I VL+
Sbjct: 39 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 98
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRR-DVDMEKEHV 186
L + + ++I++PTRELA Q+ L A+G + N IGG D+ K
Sbjct: 99 LDIQVRETQ----ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 154
Query: 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246
+ +++ TPGR+ M + +++L+LDEAD +L+ GFK+ + + LP Q
Sbjct: 155 GQ-HVVAGTPGRVFD-MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 212
Query: 247 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ-KLDMLWSF 305
L SAT + ++ + DP + V + +T ++Q + V E+ K D L
Sbjct: 213 VVLISATLPHEILEMTNKFMTDPIRILVKRDELTL--EGIKQFFVAVEREEWKFDTLCDL 270
Query: 306 IKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS- 364
++ ++F + ++V ++ E ++ + ++G M Q R +I +F S
Sbjct: 271 YDTLTITQAVIFCNTKRKVDWLTEKMRE--ANFTVSSMHGDMPQKERESIMKEFRSGASR 328
Query: 365 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM 424
VL TDV +RGLD + V ++ D P + YIHR+GR+ RY G ++ F+ ++++
Sbjct: 329 VLISTDVWARGLDVPQ-VSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRI 387
Query: 425 LEKLRE 430
L + +
Sbjct: 388 LRDIEQ 393
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 103/366 (28%), Positives = 187/366 (51%), Gaps = 14/366 (3%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
FD + + + G+ GF K + IQ+ ++ + GRD++ +++G+GKT F + VL+
Sbjct: 3 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQC 62
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRR-DVDMEKEHV 186
L + + ++I++PTRELA Q+ L A+G + N + IGG D+ K
Sbjct: 63 LDIQVRETQ----ALILAPTRELAVQVQKGLLALGDYMNVQSHACIGGTNVGEDIRKLDY 118
Query: 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246
+ +++ TPGR+ M + +++L+LDEAD +L+ GFK+ + + LP Q
Sbjct: 119 GQ-HVVAGTPGRVFD-MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 176
Query: 247 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ-KLDMLWSF 305
L SAT V ++ + DP + V + +T ++Q + V E+ K D L
Sbjct: 177 VVLISATLPHEVLEMTNKFMTDPIRILVKRDELTL--EGIKQFFVAVEREEWKFDTLCDL 234
Query: 306 IKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS- 364
++ ++F + ++V ++ E ++ + ++G M Q R +I +F S
Sbjct: 235 YDTLTITQAVIFCNTKRKVDWLTEKMRE--ANFTVSSMHGDMPQKERESIMKEFRSGASR 292
Query: 365 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM 424
VL TDV +RGLD + V ++ D P + YIHR+GR+ RY G +V F+ ++++
Sbjct: 293 VLISTDVWARGLDVPQ-VSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDIRV 351
Query: 425 LEKLRE 430
L + +
Sbjct: 352 LRDIEQ 357
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/366 (27%), Positives = 186/366 (50%), Gaps = 14/366 (3%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
FD + + + G+ GF K + IQ+ ++ + GRD++ +++G+GKT F I VL+
Sbjct: 40 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 99
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRR-DVDMEKEHV 186
L + + ++I++PTRELA Q+ L A+G + N IGG D+ K
Sbjct: 100 LDIQVRETQ----ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 155
Query: 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246
+ +++ TPGR+ M + +++L+LDEAD +L+ GFK+ + + LP Q
Sbjct: 156 GQ-HVVAGTPGRVFD-MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 213
Query: 247 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ-KLDMLWSF 305
L SAT + ++ + DP + V + +T ++Q + V E+ K D L
Sbjct: 214 VVLISATLPHEILEMTNKFMTDPIRILVKRDELTL--EGIKQFFVAVEREEWKFDTLCDL 271
Query: 306 IKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS- 364
++ ++F + ++V ++ E ++ + ++G M Q R +I +F S
Sbjct: 272 YDTLTITQAVIFCNTKRKVDWLTEKMRE--ANFTVSSMHGDMPQKERESIMKEFRSGASR 329
Query: 365 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM 424
VL TDV +RGLD + V ++ D P + YIHR+GR+ RY G ++ F+ ++++
Sbjct: 330 VLISTDVWARGLDVPQ-VSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRI 388
Query: 425 LEKLRE 430
L + +
Sbjct: 389 LRDIEQ 394
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/366 (27%), Positives = 186/366 (50%), Gaps = 14/366 (3%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
FD + + + G+ GF K + IQ+ ++ + GRD++ +++G+GKT F I VL+
Sbjct: 40 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 99
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRR-DVDMEKEHV 186
L + + ++I++PTRELA Q+ L A+G + N IGG D+ K
Sbjct: 100 LDIQVRETQ----ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 155
Query: 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246
+ +++ TPGR+ M + +++L+LDEAD +L+ GFK+ + + LP Q
Sbjct: 156 GQ-HVVAGTPGRVFD-MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 213
Query: 247 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ-KLDMLWSF 305
L SAT + ++ + DP + V + +T ++Q + V E+ K D L
Sbjct: 214 VVLISATLPHEILEMTNKFMTDPIRILVKRDELTL--EGIKQFFVAVEREEWKFDTLCDL 271
Query: 306 IKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS- 364
++ ++F + ++V ++ E ++ + ++G M Q R +I +F S
Sbjct: 272 YDTLTITQAVIFCNTKRKVDWLTEKMRE--ANFTVSSMHGDMPQKERESIMKEFRSGASR 329
Query: 365 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM 424
VL TDV +RGLD + V ++ D P + YIHR+GR+ RY G ++ F+ ++++
Sbjct: 330 VLISTDVWARGLDVPQ-VSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRI 388
Query: 425 LEKLRE 430
L + +
Sbjct: 389 LRDIEQ 394
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/366 (27%), Positives = 186/366 (50%), Gaps = 14/366 (3%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
FD + + + G+ GF K + IQ+ ++ + GRD++ +++G+GKT F I VL+
Sbjct: 18 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 77
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRR-DVDMEKEHV 186
L + + ++I++PTRELA Q+ L A+G + N IGG D+ K
Sbjct: 78 LDIQVRETQ----ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 133
Query: 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246
+ +++ TPGR+ M + +++L+LDEAD +L+ GFK+ + + LP Q
Sbjct: 134 GQ-HVVAGTPGRVFD-MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 191
Query: 247 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ-KLDMLWSF 305
L SAT + ++ + DP + V + +T ++Q + V E+ K D L
Sbjct: 192 VVLISATLPHEILEMTNKFMTDPIRILVKRDELTL--EGIKQFFVAVEREEWKFDTLCDL 249
Query: 306 IKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS- 364
++ ++F + ++V ++ E ++ + ++G M Q R +I +F S
Sbjct: 250 YDTLTITQAVIFCNTKRKVDWLTEKMRE--ANFTVSSMHGDMPQKERESIMKEFRSGASR 307
Query: 365 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM 424
VL TDV +RGLD + V ++ D P + YIHR+GR+ RY G ++ F+ ++++
Sbjct: 308 VLISTDVWARGLDVPQ-VSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRI 366
Query: 425 LEKLRE 430
L + +
Sbjct: 367 LRDIEQ 372
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 102/366 (27%), Positives = 186/366 (50%), Gaps = 14/366 (3%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
FD + + + G+ GF K + IQ+ ++ + GRD++ +++G+GKT F + VL+
Sbjct: 3 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQC 62
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRR-DVDMEKEHV 186
L + + ++I++PTRELA Q+ L A+G + N IGG D+ K
Sbjct: 63 LDIQVRETQ----ALILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 118
Query: 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246
+ +++ TPGR+ M + +++L+LDEAD +L+ GFK+ + + LP Q
Sbjct: 119 GQ-HVVAGTPGRVFD-MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 176
Query: 247 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ-KLDMLWSF 305
L SAT + ++ + DP + V + +T ++Q + V E+ K D L
Sbjct: 177 VVLISATLPHEILEMTNKFMTDPIRILVKRDELTL--EGIKQFFVAVEREEWKFDTLCDL 234
Query: 306 IKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS- 364
++ ++F + ++V ++ E ++ + ++G M Q R +I +F S
Sbjct: 235 YDTLTITQAVIFCNTKRKVDWLTEKMRE--ANFTVSSMHGDMPQKERESIMKEFRSGASR 292
Query: 365 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM 424
VL TDV +RGLD + V ++ D P + YIHR+GR+ RY G +V F+ ++++
Sbjct: 293 VLISTDVWARGLDVPQ-VSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDIRV 351
Query: 425 LEKLRE 430
L + +
Sbjct: 352 LRDIEQ 357
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 184/346 (53%), Gaps = 19/346 (5%)
Query: 80 GLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDG- 138
+ D GF +++Q +P ++ G D+L AK+G GKT FV+ L++L P G
Sbjct: 21 AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL-----EPVTGQ 75
Query: 139 VGSIIISPTRELADQLFDVLKAVGKHH-NFSAGLLIGG---RRDVDMEKEHVNELNILVC 194
V +++ TRELA Q+ + K+ N + GG ++D ++ K+ N +I+V
Sbjct: 76 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK--NCPHIVVG 133
Query: 195 TPGRLLQHMDETPNFDCSQLQILILDEADRILD-VGFKKALNAIVSQLPKHRQTFLFSAT 253
TPGR+L + + + ++ ILDEAD++L+ + ++ + I P +Q +FSAT
Sbjct: 134 TPGRILA-LARNKSLNLKHIKHFILDEADKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT 192
Query: 254 QTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSK 313
+K ++ + R ++DP + V +E+ T + LQQ + + +K L+ + ++
Sbjct: 193 LSKEIRPVCRKFMQDPMEIFVDDET-KLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQ 251
Query: 314 ILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA 372
+++F+ S ++ + + + P + ++ M Q+ R++ Y QF + +R +L T++
Sbjct: 252 VVIFVKSVQRCIALAQLL--VEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLF 309
Query: 373 SRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 418
RG+D + V+ D PED +Y+HRV R R+ + G ++ F++
Sbjct: 310 GRGMDIER-VNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVS 354
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/361 (26%), Positives = 188/361 (52%), Gaps = 19/361 (5%)
Query: 65 STRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPV 124
S+ F + + + D GF +++Q +P ++ G D+L AK+G GKT FV+
Sbjct: 7 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 66
Query: 125 LEKLYKERWGPEDG-VGSIIISPTRELADQLFDVLKAVGKHH-NFSAGLLIGG---RRDV 179
L++L P G V +++ TRELA Q+ + K+ N + GG ++D
Sbjct: 67 LQQL-----EPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE 121
Query: 180 DMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILD-VGFKKALNAIV 238
++ K+ N +I+V TPGR+L + + + ++ ILDE D++L+ + ++ + I
Sbjct: 122 EVLKK--NCPHIVVGTPGRILA-LARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIF 178
Query: 239 SQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK 298
P +Q +FSAT +K ++ + R ++DP + V +E+ T + LQQ + + +K
Sbjct: 179 RMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDET-KLTLHGLQQYYVKLKDNEK 237
Query: 299 LDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQ 358
L+ + +++++F+ S ++ + + + P + ++ M Q+ R++ Y Q
Sbjct: 238 NRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLL--VEQNFPAIAIHRGMPQEERLSRYQQ 295
Query: 359 FCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFL 417
F + +R +L T++ RG+D + V+ D PED +Y+HRV R R+ + G ++ F+
Sbjct: 296 FKDFQRRILVATNLFGRGMDIER-VNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV 354
Query: 418 T 418
+
Sbjct: 355 S 355
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/361 (26%), Positives = 188/361 (52%), Gaps = 19/361 (5%)
Query: 65 STRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPV 124
S+ F + + + D GF +++Q +P ++ G D+L AK+G GKT FV+
Sbjct: 7 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 66
Query: 125 LEKLYKERWGPEDG-VGSIIISPTRELADQLFDVLKAVGKHH-NFSAGLLIGG---RRDV 179
L++L P G V +++ TRELA Q+ + K+ N + GG ++D
Sbjct: 67 LQQL-----EPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE 121
Query: 180 DMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILD-VGFKKALNAIV 238
++ K+ N +I+V TPGR+L + + + ++ ILDE D++L+ + ++ + I
Sbjct: 122 EVLKK--NCPHIVVGTPGRILA-LARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIF 178
Query: 239 SQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK 298
P +Q +FSAT +K ++ + R ++DP + V +E+ T + LQQ + + +K
Sbjct: 179 RMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDET-KLTLHGLQQYYVKLKDNEK 237
Query: 299 LDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQ 358
L+ + +++++F+ S ++ + + + P + ++ M Q+ R++ Y Q
Sbjct: 238 NRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLL--VEQNFPAIAIHRGMPQEERLSRYQQ 295
Query: 359 FCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFL 417
F + +R +L T++ RG+D + V+ D PED +Y+HRV R R+ + G ++ F+
Sbjct: 296 FKDFQRRILVATNLFGRGMDIER-VNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV 354
Query: 418 T 418
+
Sbjct: 355 S 355
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 133 bits (334), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 185/356 (51%), Gaps = 20/356 (5%)
Query: 49 EPIGRIGEDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILG 108
EP G I E ++++ V S FD + +S+ G+ GF K + IQ+ ++ + G D++
Sbjct: 26 EPEGVI-ESNWNEIVDS--FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIA 82
Query: 109 AAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFS 168
A++G+GKT F I +L+++ + + +++++PTRELA Q+ V+ A+G + S
Sbjct: 83 QAQSGTGKTATFAISILQQIELDLKATQ----ALVLAPTRELAQQIQKVVMALGDYMGAS 138
Query: 169 AGLLIGGRR-DVDMEKEHVNELNILVCTPGRLLQHMDE---TPNFDCSQLQILILDEADR 224
IGG +++K + +I+V TPGR+ ++ +P + +++ +LDEAD
Sbjct: 139 CHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY----IKMFVLDEADE 194
Query: 225 ILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPN 284
+L GFK + I +L + Q L SAT V ++ + ++DP + V +E +T
Sbjct: 195 MLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGI 254
Query: 285 RLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLY 344
R Q + E KLD L + ++ ++F+ + ++V ++ E K + ++
Sbjct: 255 R-QFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTE--KMHARDFTVSAMH 311
Query: 345 GRMKQDRRMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIH 399
G M Q R I +F S VL TD+ +RG+D + V V+ D P + +YIH
Sbjct: 312 GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ-VSLVINYDLPTNRENYIH 366
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 130 bits (326), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 98/349 (28%), Positives = 181/349 (51%), Gaps = 19/349 (5%)
Query: 56 EDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSG 115
E ++++ V S FD + +S+ G+ GF K + IQ+ ++ + G D++ A++G+G
Sbjct: 6 ESNWNEIVDS--FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTG 63
Query: 116 KTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGG 175
KT F I +L+++ + + +++++PTRELA Q+ V+ A+G + S IGG
Sbjct: 64 KTATFAISILQQIELDLKATQ----ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGG 119
Query: 176 RR-DVDMEKEHVNELNILVCTPGRLLQHMDE---TPNFDCSQLQILILDEADRILDVGFK 231
+++K + +I+V TPGR+ ++ +P + +++ +LDEAD +L GFK
Sbjct: 120 TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY----IKMFVLDEADEMLSRGFK 175
Query: 232 KALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAM 291
+ I +L + Q L SAT V ++ + ++DP + V +E +T R Q
Sbjct: 176 DQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIR-QFYIN 234
Query: 292 IVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDR 351
+ E KLD L + ++ ++F+ + ++V ++ E K + ++G M Q
Sbjct: 235 VEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTE--KMHARDFTVSAMHGDMDQKE 292
Query: 352 RMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIH 399
R I +F S VL TD+ +RG+D + V V+ D P + +YIH
Sbjct: 293 RDVIMREFRSGSSRVLITTDLLARGIDVQQ-VSLVINYDLPTNRENYIH 340
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 105/372 (28%), Positives = 188/372 (50%), Gaps = 16/372 (4%)
Query: 67 RFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLE 126
+FD + + + G+ GF + + IQ+ ++ + G D+L A++G+GKT F I L+
Sbjct: 23 KFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQ 82
Query: 127 KLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV 186
++ P+ +++++PTRELA Q+ V+ A+ H + IGG V+ + E +
Sbjct: 83 RIDTSVKAPQ----ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVE-DAEGL 137
Query: 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246
+ I+V TPGR+ ++ + F ++++ ILDEAD +L GFK+ + I + LP Q
Sbjct: 138 RDAQIVVGTPGRVFDNI-QRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQ 196
Query: 247 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFI 306
L SAT V ++ +++P + V ++ +T + Q + E K + L
Sbjct: 197 VVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIK-QFYVNVEEEEYKYECLTDLY 255
Query: 307 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPG-IPLMCLYGRMKQDRRMAIYAQFCEKRS- 364
+ ++ ++F C + V E KLR + +Y + Q R I +F S
Sbjct: 256 DSISVTQAVIF---CNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 312
Query: 365 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE--- 421
+L TD+ +RG+D + V V+ D P + +YIHR+GR R+ G ++ F+T +
Sbjct: 313 ILISTDLLARGIDVQQ-VSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGA 371
Query: 422 MKMLEKLREAKI 433
M+ LEK +I
Sbjct: 372 MRELEKFYSTQI 383
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 103/361 (28%), Positives = 173/361 (47%), Gaps = 25/361 (6%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCG--RDILGAAKTGSGKTLAFVIPVL 125
FD+L ++ + G+ F K + IQ +LP L R+++ +++G+GKT AF + +L
Sbjct: 7 FDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTML 66
Query: 126 EKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEH 185
++ E P+ +I ++P+RELA Q +V++ +GK ++ L++ EK
Sbjct: 67 TRVNPEDASPQ----AICLAPSRELARQTLEVVQEMGKFTKITSQLIVPD----SFEKNK 118
Query: 186 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDV-GFKKALNAIVSQLPKH 244
++V TPG +L M +++I +LDEAD +LD G + LPK
Sbjct: 119 QINAQVIVGTPGTVLDLMRRKL-MQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKD 177
Query: 245 RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ-KLDMLW 303
Q LFSAT +V+ A+ + + L + V + ++Q M E K D+L
Sbjct: 178 TQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNV--DAIKQLYMDCKNEADKFDVLT 235
Query: 304 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR 363
++F+ + K ++ K G + L+G ++ R + F E R
Sbjct: 236 ELYGVMTIGSSIIFVATKKTANVLYGKLKS--EGHEVSILHGDLQTQERDRLIDDFREGR 293
Query: 364 S-VLFCTDVASRGLDFNKAVDWVVQVDCP------EDVASYIHRVGRTARYNSGGRSVLF 416
S VL T+V +RG+D V VV D P D A+YIHR+GRT R+ G ++ F
Sbjct: 294 SKVLITTNVLARGIDI-PTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISF 352
Query: 417 L 417
+
Sbjct: 353 V 353
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 103/361 (28%), Positives = 173/361 (47%), Gaps = 25/361 (6%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCG--RDILGAAKTGSGKTLAFVIPVL 125
FD+L ++ + G+ F K + IQ +LP L R+++ +++G+GKT AF + +L
Sbjct: 7 FDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTML 66
Query: 126 EKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEH 185
++ E P+ +I ++P+RELA Q +V++ +GK ++ L++ EK
Sbjct: 67 TRVNPEDASPQ----AICLAPSRELARQTLEVVQEMGKFTKITSQLIVPD----SFEKNK 118
Query: 186 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDV-GFKKALNAIVSQLPKH 244
++V TPG +L M +++I +LDEAD +LD G + LPK
Sbjct: 119 QINAQVIVGTPGTVLDLMRRKL-MQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKD 177
Query: 245 RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ-KLDMLW 303
Q LFSAT +V+ A+ + + L + V + ++Q M E K D+L
Sbjct: 178 TQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNV--DAIKQLYMDCKNEADKFDVLT 235
Query: 304 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR 363
++F+ + K ++ K G + L+G ++ R + F E R
Sbjct: 236 ELYGLMTIGSSIIFVATKKTANVLYGKLKS--EGHEVSILHGDLQTQERDRLIDDFREGR 293
Query: 364 S-VLFCTDVASRGLDFNKAVDWVVQVDCP------EDVASYIHRVGRTARYNSGGRSVLF 416
S VL T+V +RG+D V VV D P D A+YIHR+GRT R+ G ++ F
Sbjct: 294 SKVLITTNVLARGIDI-PTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISF 352
Query: 417 L 417
+
Sbjct: 353 V 353
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 118 bits (296), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 102/384 (26%), Positives = 184/384 (47%), Gaps = 28/384 (7%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCG--RDILGAAKTGSGKTLAFVIPVL 125
F++L + + G+ GF + + IQ +LP L ++++ +++G+GKT AFV+ +L
Sbjct: 94 FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML 153
Query: 126 EKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH-NFSAGLLIGGRRDVDMEKE 184
++ P+ + +SPT ELA Q V++ +GK + + G + +E+
Sbjct: 154 SQVEPANKYPQ----CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK---LERG 206
Query: 185 HVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDV-GFKKALNAIVSQLPK 243
I++ TPG +L + D ++++ +LDEAD ++ G + I LP+
Sbjct: 207 QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR 266
Query: 244 HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLW 303
+ Q LFSAT SV A+ + DP + + E T + Q + ++K L
Sbjct: 267 NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIK-QYYVLCSSRDEKFQALC 325
Query: 304 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K 362
+ A ++ ++F + K ++ K G + L G M ++R A+ +F E K
Sbjct: 326 NLYGAITIAQAMIFCHTRKTASWLAAELSK--EGHQVALLSGEMMVEQRAAVIERFREGK 383
Query: 363 RSVLFCTDVASRGLDFNKAVDWVVQVDCP------EDVASYIHRVGRTARYNSGGRSVLF 416
VL T+V +RG+D + V V+ D P D +Y+HR+GRT R+ G +V
Sbjct: 384 EKVLVTTNVCARGIDVEQ-VSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNM 442
Query: 417 L-TPTEMKMLEKLREAKIPIHFTK 439
+ + M +L +++E HF K
Sbjct: 443 VDSKHSMNILNRIQE-----HFNK 461
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 118 bits (296), Expect = 1e-26, Method: Composition-based stats.
Identities = 74/211 (35%), Positives = 118/211 (55%), Gaps = 12/211 (5%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F P+ + L G T IQ A+LP +L G+D++G A+TG+GKTLAF +P+ E+
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAER 62
Query: 128 LYKERWGPEDGVG----SIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEK 183
L P G +++++PTRELA Q+ L AV H A + GG ++
Sbjct: 63 L-----APSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVA--VYGGTGYGKQKE 115
Query: 184 EHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPK 243
+ + +V TPGR L ++ + D S++++ +LDEAD +L +GF++ + A++S P
Sbjct: 116 ALLRGADAVVATPGRALDYLRQGV-LDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPP 174
Query: 244 HRQTFLFSATQTKSVQDLARLSLKDPQYLSV 274
RQT LFSAT + LA +K+P ++V
Sbjct: 175 SRQTLLFSATLPSWAKRLAERYMKNPVLINV 205
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/384 (26%), Positives = 184/384 (47%), Gaps = 28/384 (7%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCG--RDILGAAKTGSGKTLAFVIPVL 125
F++L + + G+ GF + + IQ +LP L ++++ +++G+GKT AFV+ +L
Sbjct: 27 FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML 86
Query: 126 EKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH-NFSAGLLIGGRRDVDMEKE 184
++ P+ + +SPT ELA Q V++ +GK + + G + +E+
Sbjct: 87 SQVEPANKYPQ----CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK---LERG 139
Query: 185 HVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDV-GFKKALNAIVSQLPK 243
I++ TPG +L + D ++++ +LDEAD ++ G + I LP+
Sbjct: 140 QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR 199
Query: 244 HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLW 303
+ Q LFSAT SV A+ + DP + + E T + Q + ++K L
Sbjct: 200 NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIK-QYYVLCSSRDEKFQALC 258
Query: 304 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K 362
+ A ++ ++F + K ++ K G + L G M ++R A+ +F E K
Sbjct: 259 NLYGAITIAQAMIFCHTRKTASWLAAELSK--EGHQVALLSGEMMVEQRAAVIERFREGK 316
Query: 363 RSVLFCTDVASRGLDFNKAVDWVVQVDCP------EDVASYIHRVGRTARYNSGGRSVLF 416
VL T+V +RG+D + V V+ D P D +Y+HR+GRT R+ G +V
Sbjct: 317 EKVLVTTNVCARGIDVEQ-VSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNM 375
Query: 417 L-TPTEMKMLEKLREAKIPIHFTK 439
+ + M +L +++E HF K
Sbjct: 376 VDSKHSMNILNRIQE-----HFNK 394
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/384 (26%), Positives = 184/384 (47%), Gaps = 28/384 (7%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCG--RDILGAAKTGSGKTLAFVIPVL 125
F++L + + G+ GF + + IQ +LP L ++++ +++G+GKT AFV+ +L
Sbjct: 43 FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML 102
Query: 126 EKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH-NFSAGLLIGGRRDVDMEKE 184
++ P+ + +SPT ELA Q V++ +GK + + G + +E+
Sbjct: 103 SQVEPANKYPQ----CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK---LERG 155
Query: 185 HVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDV-GFKKALNAIVSQLPK 243
I++ TPG +L + D ++++ +LDEAD ++ G + I LP+
Sbjct: 156 QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR 215
Query: 244 HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLW 303
+ Q LFSAT SV A+ + DP + + E T + Q + ++K L
Sbjct: 216 NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIK-QYYVLCSSRDEKFQALC 274
Query: 304 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K 362
+ A ++ ++F + K ++ K G + L G M ++R A+ +F E K
Sbjct: 275 NLYGAITIAQAMIFCHTRKTASWLAAELSK--EGHQVALLSGEMMVEQRAAVIERFREGK 332
Query: 363 RSVLFCTDVASRGLDFNKAVDWVVQVDCP------EDVASYIHRVGRTARYNSGGRSVLF 416
VL T+V +RG+D + V V+ D P D +Y+HR+GRT R+ G +V
Sbjct: 333 EKVLVTTNVCARGIDVEQ-VSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNM 391
Query: 417 L-TPTEMKMLEKLREAKIPIHFTK 439
+ + M +L +++E HF K
Sbjct: 392 VDSKHSMNILNRIQE-----HFNK 410
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 102/384 (26%), Positives = 184/384 (47%), Gaps = 28/384 (7%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCG--RDILGAAKTGSGKTLAFVIPVL 125
F++L + + G+ GF + + IQ +LP L ++++ +++G+GKT AFV+ +L
Sbjct: 64 FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML 123
Query: 126 EKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH-NFSAGLLIGGRRDVDMEKE 184
++ P+ + +SPT ELA Q V++ +GK + + G + +E+
Sbjct: 124 SQVEPANKYPQ----CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK---LERG 176
Query: 185 HVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDV-GFKKALNAIVSQLPK 243
I++ TPG +L + D ++++ +LDEAD ++ G + I LP+
Sbjct: 177 QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR 236
Query: 244 HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLW 303
+ Q LFSAT SV A+ + DP + + E T + Q + ++K L
Sbjct: 237 NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIK-QYYVLCSSRDEKFQALC 295
Query: 304 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K 362
+ A ++ ++F + K ++ K G + L G M ++R A+ +F E K
Sbjct: 296 NLYGAITIAQAMIFCHTRKTASWLAAELSK--EGHQVALLSGEMMVEQRAAVIERFREGK 353
Query: 363 RSVLFCTDVASRGLDFNKAVDWVVQVDCP------EDVASYIHRVGRTARYNSGGRSVLF 416
VL T+V +RG+D + V V+ D P D +Y+HR+GRT R+ G +V
Sbjct: 354 EKVLVTTNVCARGIDVEQ-VSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNM 412
Query: 417 L-TPTEMKMLEKLREAKIPIHFTK 439
+ + M +L +++E HF K
Sbjct: 413 VDSKHSMNILNRIQE-----HFNK 431
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 104/372 (27%), Positives = 183/372 (49%), Gaps = 16/372 (4%)
Query: 67 RFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLE 126
+FD + + G+ GF + + IQ+ ++ + G D+L A++G+GKT F I L+
Sbjct: 22 KFDDXELDENLLRGVFGYGFEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGTFSIAALQ 81
Query: 127 KLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV 186
++ P+ ++ ++PTRELA Q+ V+ A+ H + IGG V+ + E +
Sbjct: 82 RIDTSVKAPQ----ALXLAPTRELALQIQKVVXALAFHXDIKVHACIGGTSFVE-DAEGL 136
Query: 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246
+ I+V TPGR+ ++ + F +++ ILDEAD L GFK+ + I + LP Q
Sbjct: 137 RDAQIVVGTPGRVFDNI-QRRRFRTDKIKXFILDEADEXLSSGFKEQIYQIFTLLPPTTQ 195
Query: 247 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFI 306
L SAT V ++ ++P + V ++ +T + Q + E K + L
Sbjct: 196 VVLLSATXPNDVLEVTTKFXRNPVRILVKKDELTLEGIK-QFYVNVEEEEYKYECLTDLY 254
Query: 307 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPG-IPLMCLYGRMKQDRRMAIYAQFCEKRS- 364
+ ++ ++F C + V E KLR + +Y + Q R I +F S
Sbjct: 255 DSISVTQAVIF---CNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIXKEFRSGSSR 311
Query: 365 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM-- 422
+L TD+ +RG+D + V V+ D P + +YIHR+GR R+ G ++ F+T ++
Sbjct: 312 ILISTDLLARGIDVQQ-VSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGA 370
Query: 423 -KMLEKLREAKI 433
+ LEK +I
Sbjct: 371 XRELEKFYSTQI 382
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 117 bits (293), Expect = 3e-26, Method: Composition-based stats.
Identities = 73/211 (34%), Positives = 118/211 (55%), Gaps = 12/211 (5%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F P+ + L G T I+ A+LP +L G+D++G A+TG+GKTLAF +P+ E+
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPIAER 62
Query: 128 LYKERWGPEDGVG----SIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEK 183
L P G +++++PTRELA Q+ L AV H A + GG ++
Sbjct: 63 L-----APSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVA--VYGGTGYGKQKE 115
Query: 184 EHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPK 243
+ + +V TPGR L ++ + D S++++ +LDEAD +L +GF++ + A++S P
Sbjct: 116 ALLRGADAVVATPGRALDYLRQGV-LDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPP 174
Query: 244 HRQTFLFSATQTKSVQDLARLSLKDPQYLSV 274
RQT LFSAT + LA +K+P ++V
Sbjct: 175 SRQTLLFSATLPSWAKRLAERYMKNPVLINV 205
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/338 (28%), Positives = 168/338 (49%), Gaps = 27/338 (7%)
Query: 92 IQRASLPHSLCG--RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRE 149
IQ +LP L R+++G +++G+GKT AF + +L ++ P+ +I ++P+RE
Sbjct: 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQ----AICLAPSRE 200
Query: 150 LADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNF 209
LA Q+ DV+ +GK+ G +D + K + I++ TPG ++ M
Sbjct: 201 LARQIMDVVTEMGKYTEVKTAF---GIKD-SVPKGAKIDAQIVIGTPGTVMDLMKRR-QL 255
Query: 210 DCSQLQILILDEADRILDV-GFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKD 268
D +++ +LDEAD +LD G I LP++ Q LFSAT ++ V+ A +
Sbjct: 256 DARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPN 315
Query: 269 PQYLSVHEESVTATPNRLQQTAMIVPLEQ-KLDMLWSFIKAHLNSKILVFLTSCKQVKYV 327
+ + E ++ ++Q M E+ K ++L + ++F CK+
Sbjct: 316 ANEIRLKTEELSV--EGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIF---CKKKDTA 370
Query: 328 FEAFKKLRP-GIPLMCLYGRMKQDRRMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWV 385
E +++ G + CL G ++ +R AI F S VL T+V +RG+D ++ V+ V
Sbjct: 371 EEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQ-VNLV 429
Query: 386 VQVDCPEDVA------SYIHRVGRTARYNSGGRSVLFL 417
V D P D A +Y+HR+GRT R+ G S+ F+
Sbjct: 430 VNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFV 467
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 108 bits (271), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 126/234 (53%), Gaps = 11/234 (4%)
Query: 50 PIGRIGEDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGA 109
P+ G D +S FD+L + ++ + A + + T IQ+ ++P L RDI+
Sbjct: 8 PVSVTGPD-YSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMAC 66
Query: 110 AKTGSGKTLAFVIPVL-----EKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKH 164
A+TGSGKT AF+IP++ + L ++R+ +I++PTRELA Q+ + +
Sbjct: 67 AQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLN 126
Query: 165 HNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADR 224
+ ++ GG +E ++LV TPGRL+ +++ + ++LDEADR
Sbjct: 127 TPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN-KISLEFCKYIVLDEADR 185
Query: 225 ILDVGFKKALNAIV--SQLPK--HRQTFLFSATQTKSVQDLARLSLKDPQYLSV 274
+LD+GF+ + I+ S +P +RQT +FSAT K +Q LA L + +++V
Sbjct: 186 MLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 239
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 118/203 (58%), Gaps = 6/203 (2%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F+ + ++ G+ + G+ K + IQ S+P +L GRDIL AK G+GK+ A++IP+LE+
Sbjct: 5 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 64
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN 187
L ++ D + +++I PTRELA Q+ + V KH + + G ++ + ++
Sbjct: 65 LDLKK----DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 120
Query: 188 E-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246
+ +++++ TPGR+L + + +Q+++LDEAD++L F + + I+ LPK+RQ
Sbjct: 121 DTVHVVIATPGRILDLIKKGVA-KVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQ 179
Query: 247 TFLFSATQTKSVQDLARLSLKDP 269
L+SAT SVQ L+ P
Sbjct: 180 ILLYSATFPLSVQKFMNSHLEKP 202
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 107/193 (55%), Gaps = 8/193 (4%)
Query: 86 FVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKL----YKERWGPEDGVGS 141
F + T IQ P +L G D++G A+TGSGKTL++++P + + + ER DG
Sbjct: 63 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER---GDGPIC 119
Query: 142 IIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQ 201
++++PTRELA Q+ V + + + GG ++ + I + TPGRL+
Sbjct: 120 LVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 179
Query: 202 HMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDL 261
+ E + + L+LDEADR+LD+GF+ + IV Q+ RQT ++SAT K V+ L
Sbjct: 180 FL-ECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQL 238
Query: 262 ARLSLKDPQYLSV 274
A LKD ++++
Sbjct: 239 AEDFLKDYIHINI 251
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 107/193 (55%), Gaps = 8/193 (4%)
Query: 86 FVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKL----YKERWGPEDGVGS 141
F + T IQ P +L G D++G A+TGSGKTL++++P + + + ER DG
Sbjct: 49 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER---GDGPIC 105
Query: 142 IIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQ 201
++++PTRELA Q+ V + + + GG ++ + I + TPGRL+
Sbjct: 106 LVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 165
Query: 202 HMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDL 261
+ E + + L+LDEADR+LD+GF+ + IV Q+ RQT ++SAT K V+ L
Sbjct: 166 FL-ECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQL 224
Query: 262 ARLSLKDPQYLSV 274
A LKD ++++
Sbjct: 225 AEDFLKDYIHINI 237
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 116/210 (55%), Gaps = 8/210 (3%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
F+ L +S+ GL+ AGF + + +Q ++P CG D++ AK+G+GKT F L+
Sbjct: 26 FESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDS 85
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVG-KHHNFSAGLLIGGRRDVDMEKEHV 186
L E + +I++PTRE+A Q+ V+ A+G K + IGG + +K +
Sbjct: 86 LVLENLSTQ----ILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGG-TPLSQDKTRL 140
Query: 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG-FKKALNAIVSQLPKHR 245
+ +I V +PGR ++ + E + +++ ILDEAD++L+ G F++ +N I S LP +
Sbjct: 141 KKCHIAVGSPGR-IKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASK 199
Query: 246 QTFLFSATQTKSVQDLARLSLKDPQYLSVH 275
Q SAT + + + ++DP ++ ++
Sbjct: 200 QMLAVSATYPEFLANALTKYMRDPTFVRLN 229
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 102 bits (255), Expect = 6e-22, Method: Composition-based stats.
Identities = 71/216 (32%), Positives = 116/216 (53%), Gaps = 11/216 (5%)
Query: 66 TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVL 125
T+F + P +K F K T+IQ +P +L G +G ++TG+GKT A+++P+
Sbjct: 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESXVGQSQTGTGKTHAYLLPIX 63
Query: 126 EKLYKERWGPEDGVGSIIISPTRELADQLF----DVLKAVGKHHNFSAGLLIGGR-RDVD 180
EK+ ER V ++I +PTRELA Q++ + K K A LIGG +
Sbjct: 64 EKIKPER----AEVQAVITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGGTDKQKA 119
Query: 181 MEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ 240
+EK +V + +I++ TPGR+ + E D IL++DEAD LD GF ++ I ++
Sbjct: 120 LEKLNV-QPHIVIGTPGRINDFIREQA-LDVHTAHILVVDEADLXLDXGFITDVDQIAAR 177
Query: 241 LPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHE 276
PK Q +FSAT + ++ + ++P ++ V E
Sbjct: 178 XPKDLQXLVFSATIPEKLKPFLKKYXENPTFVHVLE 213
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 117/214 (54%), Gaps = 6/214 (2%)
Query: 67 RFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLE 126
+FD + + + G+ GF + + IQ+ ++ + G D+L A++G+GKT F I L+
Sbjct: 15 KFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQ 74
Query: 127 KLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV 186
++ P+ +++++PTRELA Q+ V+ A+ H + IGG V+ + E +
Sbjct: 75 RIDTSVKAPQ----ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVE-DAEGL 129
Query: 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246
+ I+V TPGR+ ++ + F ++++ ILDEAD +L GFK+ + I + LP Q
Sbjct: 130 RDAQIVVGTPGRVFDNI-QRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQ 188
Query: 247 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVT 280
L SAT V ++ +++P + V ++ +T
Sbjct: 189 VVLLSATMPNDVLEVTTKFMRNPVRILVKKDELT 222
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 112/203 (55%), Gaps = 6/203 (2%)
Query: 67 RFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLE 126
+FD + + ++ G+ GF + + IQ+ ++ + G D+L A++G+GKT F I L+
Sbjct: 22 KFDDMELDEQLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQ 81
Query: 127 KLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV 186
++ P+ +++++PTRELA Q+ V+ A+ H + IGG V+ + E +
Sbjct: 82 RIDTSVKAPQ----ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVE-DAEGL 136
Query: 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246
+ I+V TPGR+ ++ + F ++++ ILDEAD +L GFK+ + I + LP Q
Sbjct: 137 RDAQIVVGTPGRVFDNI-QRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQ 195
Query: 247 TFLFSATQTKSVQDLARLSLKDP 269
L SAT V ++ +++P
Sbjct: 196 VVLLSATMPNDVLEVTTKFMRNP 218
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 126/234 (53%), Gaps = 22/234 (9%)
Query: 52 GRIGEDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAK 111
G + E ++++ V + FD + + + G+ GF K + IQ+ ++ + G D++ A+
Sbjct: 18 GGVIESNWNEIVDN--FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQ 75
Query: 112 TGSGKTLAFVIPVLEKL---YKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFS 168
+G+GKT F I +L++L +KE +++++PTRELA Q+ V+ A+G + +
Sbjct: 76 SGTGKTATFAISILQQLEIEFKE-------TQALVLAPTRELAQQIQKVILALGDYMGAT 128
Query: 169 AGLLIGGR--RDVDMEKEHVNELNILVCTPGRLLQHMDE---TPNFDCSQLQILILDEAD 223
IGG R+ +M+K +I+V TPGR+ ++ +P + +++ +LDEAD
Sbjct: 129 CHACIGGTNVRN-EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW----IKMFVLDEAD 183
Query: 224 RILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEE 277
+L GFK + I +L Q L SAT V ++ + ++DP + V +E
Sbjct: 184 EMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKE 237
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 95.9 bits (237), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 114/210 (54%), Gaps = 13/210 (6%)
Query: 73 ISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKER 132
I+ + + DAGF T IQ ++P L GR++L +A TGSGKTLAF IP+L +L +
Sbjct: 36 INSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQP- 94
Query: 133 WGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEK---EHVNEL 189
G ++IISPTRELA Q+ L + + F ++ + V +K + +
Sbjct: 95 --ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMI--HKAAVAAKKFGPKSSKKF 150
Query: 190 NILVCTPGRLLQHM-DETPNFDCSQLQILILDEADRILD---VGFKKALNAIVSQLPKHR 245
+ILV TP RL+ + + P D + ++ L++DE+D++ + GF+ L +I H+
Sbjct: 151 DILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHK 210
Query: 246 -QTFLFSATQTKSVQDLARLSLKDPQYLSV 274
+ +FSAT V+ +L+L + +S+
Sbjct: 211 VRRAMFSATFAYDVEQWCKLNLDNVISVSI 240
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 89.7 bits (221), Expect = 5e-18, Method: Composition-based stats.
Identities = 62/223 (27%), Positives = 113/223 (50%), Gaps = 24/223 (10%)
Query: 56 EDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSG 115
E ++++ V S FD + +S+ G+ GF + IQ+ ++ + G D++ A++G+G
Sbjct: 7 ESNWNEIVDS--FDDMNLSESLLRGIYAYGFEXPSAIQQRAILPCIXGYDVIAQAQSGTG 64
Query: 116 KTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGG 175
T F I +L+++ + + +++++PTRELA Q+ V+ A+G + S IGG
Sbjct: 65 XTATFAISILQQIELDLXATQ----ALVLAPTRELAQQIQXVVMALGDYMGASCHACIGG 120
Query: 176 R------RDVDMEKEHVNELNILVCTPGRLLQHMDE---TPNFDCSQLQILILDEADRIL 226
+ + ME H I+V TPGR+ ++ +P + + + +LDEAD +L
Sbjct: 121 TNVRAEVQXLQMEAPH-----IIVGTPGRVFDMLNRRYLSPXY----IXMFVLDEADEML 171
Query: 227 DVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDP 269
GF + I L + Q L SAT V ++ ++DP
Sbjct: 172 SRGFXDQIYDIFQXLNSNTQVVLLSATMPSDVLEVTXXFMRDP 214
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 110/196 (56%), Gaps = 10/196 (5%)
Query: 84 AGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPE--DGVGS 141
G +K T IQ + P L G D++ A+TG+GKTL++++P L + E +G G
Sbjct: 38 VGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGM 97
Query: 142 IIISPTRELADQLFDVLKAVGKHHNFSA--GLLIGGRRDVDMEKEHVNE-LNILVCTPGR 198
++++PTRELA + +A +++ + I G R+ + + E +++ ++I++ TPGR
Sbjct: 98 LVLTPTRELALHV----EAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGR 153
Query: 199 LLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSV 258
L + + + + L++DEAD++LD+ F+ + I+ + RQT + SAT +V
Sbjct: 154 L-NDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTV 212
Query: 259 QDLARLSLKDPQYLSV 274
+ LA LKDP + V
Sbjct: 213 RQLALSYLKDPMIVYV 228
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 116/228 (50%), Gaps = 16/228 (7%)
Query: 55 GEDSFSKYVG--STRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKT 112
G D YV S+ F + + + D GF +++Q +P ++ G D+L AK+
Sbjct: 1 GSDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKS 60
Query: 113 GSGKTLAFVIPVLEKLYKERWGPEDG-VGSIIISPTRELADQLFDVLKAVGKHH-NFSAG 170
G GKT FV+ L++L P G V +++ TRELA Q+ + K+ N
Sbjct: 61 GMGKTAVFVLATLQQL-----EPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 115
Query: 171 LLIGG---RRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILD 227
+ GG ++D ++ K+ N +I+V TPGR+L + + + ++ ILDE D++L+
Sbjct: 116 VFFGGLSIKKDEEVLKK--NCPHIVVGTPGRILA-LARNKSLNLKHIKHFILDECDKMLE 172
Query: 228 -VGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSV 274
+ ++ + I P +Q +FSAT +K ++ + R ++DP + V
Sbjct: 173 QLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 220
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
pdb|4DB4|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
Length = 256
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 76/124 (61%), Gaps = 3/124 (2%)
Query: 311 NSKILVFLTSCKQVKYVFEAFK-KLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS-VLFC 368
N K ++F + K ++ K + + +P++ +G++ Q++R ++ +F + S +L C
Sbjct: 33 NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVC 92
Query: 369 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 428
TDV +RG+DF V V+Q+ P ++A+YIHR+GRTAR G SVLF+ E+ + +L
Sbjct: 93 TDVGARGMDFPN-VHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVREL 151
Query: 429 REAK 432
+AK
Sbjct: 152 EDAK 155
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|D Chain D, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 76/124 (61%), Gaps = 3/124 (2%)
Query: 311 NSKILVFLTSCKQVKYVFEAFK-KLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS-VLFC 368
N K ++F + K ++ K + + +P++ +G++ Q++R ++ +F + S +L C
Sbjct: 33 NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVC 92
Query: 369 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 428
TDV +RG+DF V V+Q+ P ++A+YIHR+GRTAR G SVLF+ E+ + +L
Sbjct: 93 TDVGARGMDFPN-VHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVREL 151
Query: 429 REAK 432
+AK
Sbjct: 152 EDAK 155
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 76/124 (61%), Gaps = 3/124 (2%)
Query: 311 NSKILVFLTSCKQVKYVFEAFK-KLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS-VLFC 368
N K ++F + K ++ K + + +P++ +G++ Q++R ++ +F + S +L C
Sbjct: 33 NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVC 92
Query: 369 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 428
TDV +RG+DF V V+Q+ P ++A+YIHR+GRTAR G SVLF+ E+ + +L
Sbjct: 93 TDVGARGMDFPN-VHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVREL 151
Query: 429 REAK 432
+AK
Sbjct: 152 EDAK 155
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 108/216 (50%), Gaps = 12/216 (5%)
Query: 51 IGRIGEDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCG--RDILG 108
+ I D S + FD+L ++ + G+ F K + IQ +LP L R+++
Sbjct: 7 LADIQADPNSPLYSAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIA 66
Query: 109 AAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFS 168
+++G+GKT AF + +L ++ E P+ +I ++P+RELA Q +V++ +GK +
Sbjct: 67 QSQSGTGKTAAFSLTMLTRVNPEDASPQ----AICLAPSRELARQTLEVVQEMGKFTKIT 122
Query: 169 AGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILD- 227
+ L++ EK ++V TPG +L M +++I +LDEAD +LD
Sbjct: 123 SQLIVPD----SFEKNKQINAQVIVGTPGTVLDLMRRK-LMQLQKIKIFVLDEADNMLDQ 177
Query: 228 VGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLAR 263
G + LPK Q LFSAT +V+ A+
Sbjct: 178 QGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAK 213
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 107/214 (50%), Gaps = 11/214 (5%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLC--GRDILGAAKTGSGKTLAFVIPVL 125
F++L + + G+ GF + + IQ +LP L ++++ +++G+GKT AFV+ +L
Sbjct: 27 FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML 86
Query: 126 EKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH-NFSAGLLIGGRRDVDMEKE 184
++ P+ + +SPT ELA Q V++ +GK + + G + +E+
Sbjct: 87 SQVEPANKYPQ----CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK---LERG 139
Query: 185 HVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDV-GFKKALNAIVSQLPK 243
I++ TPG +L + D ++++ +LDEAD ++ G + I LP+
Sbjct: 140 QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR 199
Query: 244 HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEE 277
+ Q LFSAT SV A+ + DP + + E
Sbjct: 200 NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE 233
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 107/214 (50%), Gaps = 11/214 (5%)
Query: 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLC--GRDILGAAKTGSGKTLAFVIPVL 125
F++L + + G+ GF + + IQ +LP L ++++ +++G+GKT AFV+ +L
Sbjct: 94 FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML 153
Query: 126 EKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH-NFSAGLLIGGRRDVDMEKE 184
++ P+ + +SPT ELA Q V++ +GK + + G + +E+
Sbjct: 154 SQVEPANKYPQ----CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK---LERG 206
Query: 185 HVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDV-GFKKALNAIVSQLPK 243
I++ TPG +L + D ++++ +LDEAD ++ G + I LP+
Sbjct: 207 QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR 266
Query: 244 HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEE 277
+ Q LFSAT SV A+ + DP + + E
Sbjct: 267 NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE 300
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 8/152 (5%)
Query: 282 TPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLM 341
T ++ + V E K +L + ++F + + V + + L G P
Sbjct: 6 TTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDL--GYPCD 63
Query: 342 CLYGRMKQDRRMAIYAQFCEKRS---VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYI 398
++G M Q+ R + +F KR L TDVA+RG+D + V+ D P + SY+
Sbjct: 64 KIHGGMIQEDRFDVMNEF--KRGEYRYLVATDVAARGIDIEN-ISLVINYDLPLEKESYV 120
Query: 399 HRVGRTARYNSGGRSVLFLTPTEMKMLEKLRE 430
HR GRT R + G+++ F+T E + L + E
Sbjct: 121 HRTGRTGRAGNKGKAISFVTAFEKRFLADIEE 152
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 314 ILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA 372
+L+F V + E L G+ + ++G Q+ R F E K+ VL TDVA
Sbjct: 57 VLIFAEKKADVDAIHEYL--LLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVA 114
Query: 373 SRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFL 417
S+GLDF A+ V+ D PE++ +Y+HR+GRT + G + F+
Sbjct: 115 SKGLDF-PAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFI 158
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 86/169 (50%), Gaps = 15/169 (8%)
Query: 267 KDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWS-FIKAHLNSKILVFLTSCKQVK 325
+DP +++ EE T + Q V QK+ L + F + +N I +F S ++V+
Sbjct: 3 QDPYEINLMEE---LTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSI-IFCNSSQRVE 58
Query: 326 YVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF----CEKRSVLFCTDVASRGLDFNKA 381
+ + +L G ++ +M+Q+ R ++ F C L CTD+ +RG+D +A
Sbjct: 59 LLAKKISQL--GYSCFYIHAKMRQEHRNRVFHDFRNGLCRN---LVCTDLFTRGIDI-QA 112
Query: 382 VDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLRE 430
V+ V+ D P+ +Y+HR+GR+ R+ G ++ +T + L+ + E
Sbjct: 113 VNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEE 161
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56
Length = 172
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 71/134 (52%), Gaps = 4/134 (2%)
Query: 286 LQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG 345
LQQ + + +K L+ + +++++F+ S ++ + + + P + ++
Sbjct: 6 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLL--VEQNFPAIAIHR 63
Query: 346 RMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRT 404
M Q+ R++ Y QF + +R +L T++ RG+D + V+ D PED +Y+HRV R
Sbjct: 64 GMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIER-VNIAFNYDMPEDSDTYLHRVARA 122
Query: 405 ARYNSGGRSVLFLT 418
R+ + G ++ F++
Sbjct: 123 GRFGTKGLAITFVS 136
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 7/157 (4%)
Query: 281 ATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPL 340
+T + Q + V K L + A + + K+ E F G
Sbjct: 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFL-YHEGYAC 73
Query: 341 MCLYG-RMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIH 399
++G R ++DR A++ K +L T VA+RGLD + V V+ D P D+ Y+H
Sbjct: 74 TSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISN-VKHVINFDLPSDIEEYVH 132
Query: 400 RVGRTARYNSGGRSVLFLTPTEMK----MLEKLREAK 432
R+GRT R + G + F + +L+ L EAK
Sbjct: 133 RIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK 169
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 142/344 (41%), Gaps = 38/344 (11%)
Query: 101 LCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKA 160
L GRD L TG GK+L + IP L +G+ ++++SP L D L+A
Sbjct: 38 LSGRDCLVVMPTGGGKSLCYQIPALLL---------NGL-TVVVSPLISLMKDQVDQLQA 87
Query: 161 VGKHHNFSAGLLIGGRRDVDME---KEHVNELNILVCTPGRLL--QHMDETPNFDCSQLQ 215
G +A L R+ +E ++ +L P RL+ ++ +++
Sbjct: 88 NGVA---AACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPV--- 141
Query: 216 ILILDEADRILDVG--FK---KALNAIVSQLPKHRQTFLFSATQTKSVQDLARL-SLKDP 269
+L +DEA I G F+ AL + + P L + + QD+ RL L DP
Sbjct: 142 LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDP 201
Query: 270 QYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFE 329
+ + S PN M++ + LD L +++ +++ S +V+
Sbjct: 202 ----LIQISSFDRPNI---RYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDT-- 252
Query: 330 AFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFNKA-VDWVVQV 388
A + GI + ++ + R + +F ++ + + G+ NK V +VV
Sbjct: 253 AARLQSKGISAAAYHAGLENNVRADVQEKF-QRDDLQIVVATVAFGMGINKPNVRFVVHF 311
Query: 389 DCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAK 432
D P ++ SY GR R ++LF P +M L + E K
Sbjct: 312 DIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEK 355
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 10/127 (7%)
Query: 298 KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYA 357
K D+L ++F+ + K ++ K G + L+G ++ R +
Sbjct: 23 KFDVLTELYGVXTIGSSIIFVATKKTANVLYGKLKS--EGHEVSILHGDLQTQERDRLID 80
Query: 358 QFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCP------EDVASYIHRVGRTARYNSG 410
F E RS VL T+V +RG+D V VV D P D A+YIHR+GRT R+
Sbjct: 81 DFREGRSKVLITTNVLARGIDI-PTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGRK 139
Query: 411 GRSVLFL 417
G ++ F+
Sbjct: 140 GVAISFV 146
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including
The C-Terminal Reca Domain, The Dimerization Domain, And
The Rna Binding Domain
Length = 300
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 5/156 (3%)
Query: 287 QQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGR 346
++ A+ P+ +L++L + + +VF + + + + + LR G P L+G
Sbjct: 4 EEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGL--LRLGHPAQALHGD 61
Query: 347 MKQDRRMAIYAQFCEKR-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTA 405
M Q R + F + VL TDVA+RGLD + VD VV P+ +Y HR GRT
Sbjct: 62 MSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQ-VDLVVHYRMPDRAEAYQHRSGRTG 120
Query: 406 RYNSGGRSVLFLTPTEMKMLEKLREAKIPIHFTKAN 441
R GGR VL P E + +E L E + F + N
Sbjct: 121 RAGRGGRVVLLYGPRERRDVEAL-ERAVGRRFKRVN 155
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 10/127 (7%)
Query: 298 KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYA 357
K D+L ++F+ + K ++ K G + L+G ++ R +
Sbjct: 22 KFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKS--EGHEVSILHGDLQTQERDRLID 79
Query: 358 QFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCP------EDVASYIHRVGRTARYNSG 410
F E RS VL T+V +RG+D V VV D P D A+YIHR+GRT R+
Sbjct: 80 DFREGRSKVLITTNVLARGIDI-PTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRK 138
Query: 411 GRSVLFL 417
G ++ F+
Sbjct: 139 GVAISFV 145
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 10/127 (7%)
Query: 298 KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYA 357
K D+L ++F+ + K ++ K G + L+G ++ R +
Sbjct: 24 KFDVLTELYGLXTIGSSIIFVATKKTANVLYGKLKS--EGHEVSILHGDLQTQERDRLID 81
Query: 358 QFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCP------EDVASYIHRVGRTARYNSG 410
F E RS VL T+V +RG+D V VV D P D A+YIHR+GRT R+
Sbjct: 82 DFREGRSKVLITTNVLARGIDI-PTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGRK 140
Query: 411 GRSVLFL 417
G ++ F+
Sbjct: 141 GVAISFV 147
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound
To Regulator Of Ribonuclease Activity A (Rraa)
Length = 170
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 6/136 (4%)
Query: 295 LEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRM 353
LE K +L +K ++ +VF+ ++ + V E LR GI L G M Q +R
Sbjct: 14 LEHKTALLVHLLKQPEATRSIVFV---RKRERVHELANWLREAGINNCYLEGEMVQGKRN 70
Query: 354 AIYAQFCEKR-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGR 412
+ E R +VL TDVA+RG+D V V D P +Y+HR+GRTAR G
Sbjct: 71 EAIKRLTEGRVNVLVATDVAARGIDIPD-VSHVFNFDMPRSGDTYLHRIGRTARAGRKGT 129
Query: 413 SVLFLTPTEMKMLEKL 428
++ + + +L K+
Sbjct: 130 AISLVEAHDHLLLGKV 145
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 57/193 (29%), Positives = 89/193 (46%), Gaps = 9/193 (4%)
Query: 283 PNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMC 342
P ++ A+ P+ +L++L + + +VF + + + + + LR G P
Sbjct: 3 PVTYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGL--LRLGHPAQA 60
Query: 343 LYGRMKQDRRMAIYAQFCEKR-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRV 401
L+G + Q R + F + VL TDVA+RGLD + VD VV P+ +Y HR
Sbjct: 61 LHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQ-VDLVVHYRLPDRAEAYQHRS 119
Query: 402 GRTARYNSGGRSVLFLTPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGL----LAALLV 457
GRT R GGR VL P E + +E L A + F + N + V L A L
Sbjct: 120 GRTGRAGRGGRVVLLYGPRERRDVEALERA-VGRRFKRVNPPTPEEVLEAKWRHLLARLA 178
Query: 458 KYPDMQHRAQKAF 470
+ P+ +R + F
Sbjct: 179 RVPEKDYRLYQDF 191
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 85/364 (23%), Positives = 141/364 (38%), Gaps = 46/364 (12%)
Query: 85 GFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIII 144
G+ + Q + L GRD L TG GK+L + IP L +G+ ++++
Sbjct: 22 GYQQFRPGQEEIIDTVLSGRDCLVVXPTGGGKSLCYQIPALLL---------NGL-TVVV 71
Query: 145 SPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKE---HVNELNILVCTPGRL-- 199
SP L D L+A G +A L R+ +E ++ +L P RL
Sbjct: 72 SPLISLXKDQVDQLQANGVA---AACLNSTQTREQQLEVXTGCRTGQIRLLYIAPERLXL 128
Query: 200 ---LQHMDETPNFDCSQLQILILDEADRILDVG--FK---KALNAIVSQLPKHRQTFLFS 251
L+H+ +L +DEA I G F+ AL + + P L +
Sbjct: 129 DNFLEHLAHWNPV------LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFXALTA 182
Query: 252 ATQTKSVQDLARL-SLKDPQYLSVHEESVTATPN-RLQQTAMIVPLEQKLDMLWSFIKAH 309
+ QD+ RL L DP + + S PN R PL+Q L +++
Sbjct: 183 TADDTTRQDIVRLLGLNDP----LIQISSFDRPNIRYXLXEKFKPLDQ----LXRYVQEQ 234
Query: 310 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCT 369
+++ S +V+ A + GI + ++ + R + +F ++ +
Sbjct: 235 RGKSGIIYCNSRAKVEDT--AARLQSKGISAAAYHAGLENNVRADVQEKF-QRDDLQIVV 291
Query: 370 DVASRGLDFNKA-VDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 428
+ G NK V +VV D P ++ SY GR R + LF P + L +
Sbjct: 292 ATVAFGXGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAXLFYDPADXAWLRRC 351
Query: 429 REAK 432
E K
Sbjct: 352 LEEK 355
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
Length = 175
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 15/133 (11%)
Query: 315 LVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVAS 373
++F + + K++ + ++ G + L G + ++R +I +F + K VL T+V +
Sbjct: 38 IIFCQTRRNAKWL--TVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCA 95
Query: 374 RGLDFNKAVDWVVQVDCP------EDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEK 427
RG+D K V VV D P D +Y+HR+GRT R+ G + + E+ L K
Sbjct: 96 RGIDV-KQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMK 154
Query: 428 LREAKIPIHFTKA 440
+++ HF +
Sbjct: 155 IQD-----HFNSS 162
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 77/338 (22%), Positives = 144/338 (42%), Gaps = 49/338 (14%)
Query: 112 TGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGL 171
GSGKT+ + +L+ E G + + PT LA Q + N L
Sbjct: 398 VGSGKTVVAQLAILDNY-------EAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVAL 450
Query: 172 LIGGRRDVDMEKEHV------NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRI 225
LIG EKE + ++++++ T L+Q + L ++I+DE R
Sbjct: 451 LIGA--TTPSEKEKIKSGLRNGQIDVVIGTHA-LIQE-----DVHFKNLGLVIIDEQHRF 502
Query: 226 LDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNR 285
G K+ A++++ K T + SAT LA D ++V +E P R
Sbjct: 503 ---GVKQR-EALMNK-GKMVDTLVMSATPIPRSMALAFYGDLD---VTVIDE---MPPGR 551
Query: 286 LQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLT----------SCKQVKYVFEAF-KKL 334
+ M+VP++ +++ ++ F++ + F+ + K ++E K++
Sbjct: 552 KEVQTMLVPMD-RVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEV 610
Query: 335 RPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVLFCTDVASRGLDFNKAVDWVVQVDCPED 393
P L ++GR+ Q+ + + +F E R +L T V G+D +A V+ ++ PE
Sbjct: 611 FPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRAN--VMVIENPER 668
Query: 394 VA-SYIHRV-GRTARYNSGGRSVLFLTPTEMKMLEKLR 429
+ +H++ GR R L + + +E+LR
Sbjct: 669 FGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERLR 706
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1
pdb|2ZJ5|A Chain A, Archaeal Dna Helicase Hjm Complexed With Adp In Form 1
pdb|2ZJ8|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 2
pdb|2ZJA|A Chain A, Archaeal Dna Helicase Hjm Complexed With Amppcp In Form 2
Length = 720
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 24/194 (12%)
Query: 67 RFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLC-GRDILGAAKTGSGKTLAFVIPVL 125
R D+L + ++ KS LK+ G Q +L + G++ L + T SGKTL I ++
Sbjct: 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMV 61
Query: 126 EKLYKERWGPEDGVGSIIISPTRELAD---QLFDVLKAVGKHHNFSAGLLIGGRRDVDME 182
++ + G ++ I P + LA+ Q F + +G + G D D +
Sbjct: 62 HRILTQ------GGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATG-------DYDSK 108
Query: 183 KEHVNELNILVCTPGR---LLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVS 239
E + + +I++ T + LL+H ++IL+ DE I L I++
Sbjct: 109 DEWLGKYDIIIATAEKFDSLLRHGSSW----IKDVKILVADEIHLIGSRDRGATLEVILA 164
Query: 240 QLPKHRQTFLFSAT 253
+ Q SAT
Sbjct: 165 HMLGKAQIIGLSAT 178
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 35.8 bits (81), Expect = 0.092, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 321 CKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCEKRS-VLFCTDVASRGLDF 378
C + V E KLR + +Y + Q R I +F S +L TD+ +RG+D
Sbjct: 37 CNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDV 96
Query: 379 NKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE---MKMLEKLREAKI 433
+ V V+ D P + +YIHR+GR R+ G ++ F+T + M+ LEK +I
Sbjct: 97 QQ-VSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQI 153
>pdb|3DMQ|A Chain A, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
pdb|3DMQ|B Chain B, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
Length = 968
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 77/190 (40%), Gaps = 29/190 (15%)
Query: 229 GF-KKALNAIVSQLPKHRQTFLFSAT---QTKSVQDLARLSLKDPQYLSVHEESVTATPN 284
GF K+ L+ I LP QT + + KS +D AR D Y P
Sbjct: 427 GFPKRELHTIKLPLPTQYQTAIKVSGIXGARKSAEDRAR----DXLY-----------PE 471
Query: 285 RLQQ-----TAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIP 339
R+ Q A + +++ L ++ +H + K+LV + + ++ R GI
Sbjct: 472 RIYQEFEGDNATWWNFDPRVEWLXGYLTSHRSQKVLVICAKAATALQLEQVLRE-REGIR 530
Query: 340 LMCLY---GRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVAS 396
+ +++DR A +A+ VL C+++ S G +F A V D P +
Sbjct: 531 AAVFHEGXSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASH-XVXFDLPFNPDL 589
Query: 397 YIHRVGRTAR 406
R+GR R
Sbjct: 590 LEQRIGRLDR 599
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 31/143 (21%)
Query: 69 DQLPISKKTKSGLKDA-GFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 127
+ P S K K L++ K +Q ++ ++ G+++ TG GK+L + +P L
Sbjct: 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPAL-- 81
Query: 128 LYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV- 186
DG +++I P L + VLK +G SA +L + KEHV
Sbjct: 82 -------CSDGF-TLVICPLISLMEDQLMVLKQLG----ISATML-----NASSSKEHVK 124
Query: 187 ----------NELNILVCTPGRL 199
+EL ++ TP ++
Sbjct: 125 WVHAEMVNKNSELKLIYVTPEKI 147
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 13/124 (10%)
Query: 73 ISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKER 132
IS LK+ G ++ Q ++ G+++L A T +GKTL + ++ + K
Sbjct: 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-- 67
Query: 133 WGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIG-GRRDVDMEKEHVNELNI 191
G S+ + P R LA + ++ K K GL IG D + EH+ + +I
Sbjct: 68 -----GGKSLYVVPLRALAGEKYESFKKWEK-----IGLRIGISTGDYESRDEHLGDCDI 117
Query: 192 LVCT 195
+V T
Sbjct: 118 IVTT 121
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2
Bound To Amppnp
Length = 997
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 90/225 (40%), Gaps = 20/225 (8%)
Query: 88 KMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPT 147
++ Q+ ++ H G + AA T +GKT+ V E Y + +I SP
Sbjct: 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTV-----VAE--YAIAMAHRNMTKTIYTSPI 91
Query: 148 RELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETP 207
+ L++Q F K + + GL+ G DV + + N L+ T +L+ M
Sbjct: 92 KALSNQKFRDFKET--FDDVNIGLITG---DVQINPDA----NCLIMTT-EILRSMLYRG 141
Query: 208 NFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQD---LARL 264
++ +I DE + D ++ LP+H + L SAT + + + R
Sbjct: 142 ADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRT 201
Query: 265 SLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 309
K+ +S + V N + +I + Q + L + + H
Sbjct: 202 KQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKH 246
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 22/147 (14%)
Query: 81 LKDAGFVKMTDIQRASLPHSLC-GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGV 139
+K G K+ Q ++ L G +L + TGSGKTL + ++ L K +G
Sbjct: 23 IKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK------NGG 76
Query: 140 GSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGR-----RDVDMEKEHVNELNILVC 194
+I ++P R L ++ K+ F LIG + D D + + +I++
Sbjct: 77 KAIYVTPLRALTNE---------KYLTFKDWELIGFKVAMTSGDYDTDDAWLKNYDIIIT 127
Query: 195 TPGRLLQHMDETPNFDCSQLQILILDE 221
T +L P + +++ +LDE
Sbjct: 128 TYEKLDSLWRHRPEW-LNEVNYFVLDE 153
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 115/282 (40%), Gaps = 48/282 (17%)
Query: 105 DILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLF-DVLKAVGK 163
++ A TGSGKT+ +L L + G + I+P LA+Q++ D +
Sbjct: 944 NVFVGAPTGSGKTICAEFAILRMLLQSSEG-----RCVYITPMEALAEQVYMDWYEKFQD 998
Query: 164 HHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGR---LLQHMDETPNFDCSQLQILILD 220
N LL G + + + + + NI++ TP + L + + N + + ++D
Sbjct: 999 RLNKKVVLLTG---ETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKN--VQNINLFVVD 1053
Query: 221 EADRI-------LDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLS 273
E I L+V + + I SQ+ + + S++ + + +D+A +L
Sbjct: 1054 EVHLIGGENGPVLEVICSR-MRYISSQIERPIRIVALSSSLSNA-KDVA-------HWLG 1104
Query: 274 VHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKK 333
S T+T N VPLE + F +H +++L K V+ A K
Sbjct: 1105 C---SATSTFN-FHPNVRPVPLELHIQ---GFNISHTQTRLL------SMAKPVYHAITK 1151
Query: 334 LRPGIPLMCLYGRMKQDRRMAI-----YAQFCEKRSVLFCTD 370
P P++ KQ R AI A +++ L CT+
Sbjct: 1152 HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTE 1193
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 115/282 (40%), Gaps = 48/282 (17%)
Query: 105 DILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLF-DVLKAVGK 163
++ A TGSGKT+ +L L + G + I+P LA+Q++ D +
Sbjct: 944 NVFVGAPTGSGKTICAEFAILRMLLQSSEG-----RCVYITPMEALAEQVYMDWYEKFQD 998
Query: 164 HHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGR---LLQHMDETPNFDCSQLQILILD 220
N LL G + + + + + NI++ TP + L + + N + + ++D
Sbjct: 999 RLNKKVVLLTG---ETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKN--VQNINLFVVD 1053
Query: 221 EADRI-------LDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLS 273
E I L+V + + I SQ+ + + S++ + + +D+A +L
Sbjct: 1054 EVHLIGGENGPVLEVICSR-MRYISSQIERPIRIVALSSSLSNA-KDVA-------HWLG 1104
Query: 274 VHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKK 333
S T+T N VPLE + F +H +++L K V+ A K
Sbjct: 1105 C---SATSTFN-FHPNVRPVPLELHIQ---GFNISHTQTRLL------SMAKPVYHAITK 1151
Query: 334 LRPGIPLMCLYGRMKQDRRMAI-----YAQFCEKRSVLFCTD 370
P P++ KQ R AI A +++ L CT+
Sbjct: 1152 HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTE 1193
>pdb|3V05|A Chain A, 2.4 Angstrom Crystal Structure Of Superantigen-Like
Protein From Staphylococcus Aureus.
pdb|3V05|B Chain B, 2.4 Angstrom Crystal Structure Of Superantigen-Like
Protein From Staphylococcus Aureus.
pdb|3V05|C Chain C, 2.4 Angstrom Crystal Structure Of Superantigen-Like
Protein From Staphylococcus Aureus.
pdb|3V05|D Chain D, 2.4 Angstrom Crystal Structure Of Superantigen-Like
Protein From Staphylococcus Aureus
Length = 218
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 1/105 (0%)
Query: 405 ARYNSGGRSVLFLTPT-EMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQ 463
++N + P+ E+K L+ L K+ R GLL + KYP +
Sbjct: 23 GQHNYKSLKYYYSKPSIELKNLDGLYRQKVTDKGVYVWKDRKDYFVGLLGKDIEKYPQGE 82
Query: 464 HRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKI 508
H Q AF+ + + ++K + EFS + + +T KI
Sbjct: 83 HDKQDAFLVIEEETVNGRQYSIGGLSKTNSKEFSKEVDVKVTRKI 127
>pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I
pdb|4A2W|B Chain B, Structure Of Full-Length Duck Rig-I
Length = 936
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162
G++ L A TGSGKT ++ + E ++ P ++ T+ +++ K V
Sbjct: 263 GKNALICAPTGSGKTFVSIL-ICEHHFQNM--PAGRKAKVVFLATKV---PVYEQQKNVF 316
Query: 163 KHHNFSAGLLIGG-----RRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQIL 217
KHH G + G +V +EK + + +I+V TP L+ ++ S ++
Sbjct: 317 KHHFERQGYSVQGISGENFSNVSVEKV-IEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 375
Query: 218 ILDEA 222
I DE
Sbjct: 376 IFDEC 380
>pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain
pdb|4A36|A Chain A, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
pdb|4A36|B Chain B, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
Length = 556
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162
G++ L A TGSGKT ++ + E ++ P ++ T+ +++ K V
Sbjct: 22 GKNALICAPTGSGKTFVSIL-ICEHHFQNM--PAGRKAKVVFLATKV---PVYEQQKNVF 75
Query: 163 KHHNFSAGLLIGG-----RRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQIL 217
KHH G + G +V +EK + + +I+V TP L+ ++ S ++
Sbjct: 76 KHHFERQGYSVQGISGENFSNVSVEKV-IEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 134
Query: 218 ILDEA 222
I DE
Sbjct: 135 IFDEC 139
>pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|B Chain B, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|D Chain D, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|E Chain E, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
Length = 797
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162
G++ L A TGSGKT ++ + E ++ P ++ T+ +++ K V
Sbjct: 263 GKNALICAPTGSGKTFVSIL-ICEHHFQNM--PAGRKAKVVFLATKV---PVYEQQKNVF 316
Query: 163 KHHNFSAGLLIGG-----RRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQIL 217
KHH G + G +V +EK + + +I+V TP L+ ++ S ++
Sbjct: 317 KHHFERQGYSVQGISGENFSNVSVEKV-IEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 375
Query: 218 ILDEA 222
I DE
Sbjct: 376 IFDEC 380
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,819,941
Number of Sequences: 62578
Number of extensions: 801747
Number of successful extensions: 2236
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1999
Number of HSP's gapped (non-prelim): 92
length of query: 744
length of database: 14,973,337
effective HSP length: 106
effective length of query: 638
effective length of database: 8,340,069
effective search space: 5320964022
effective search space used: 5320964022
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)