Query 004567
Match_columns 744
No_of_seqs 513 out of 3479
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 01:31:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004567.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004567hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0343 RNA Helicase [RNA proc 100.0 2E-136 4E-141 1094.9 49.8 681 10-740 42-757 (758)
2 KOG0345 ATP-dependent RNA heli 100.0 6.6E-85 1.4E-89 689.5 40.4 445 66-513 4-457 (567)
3 KOG0342 ATP-dependent RNA heli 100.0 2.9E-85 6.3E-90 697.2 37.9 446 62-513 78-528 (543)
4 KOG0348 ATP-dependent RNA heli 100.0 1.9E-78 4.1E-83 647.2 34.8 444 63-507 133-661 (708)
5 KOG0330 ATP-dependent RNA heli 100.0 1.2E-71 2.6E-76 577.4 32.1 372 63-443 58-431 (476)
6 KOG0338 ATP-dependent RNA heli 100.0 3E-70 6.5E-75 581.3 28.8 395 65-465 180-589 (691)
7 KOG0331 ATP-dependent RNA heli 100.0 2E-67 4.3E-72 579.8 37.5 363 64-430 89-458 (519)
8 COG0513 SrmB Superfamily II DN 100.0 4.3E-66 9.4E-71 589.7 40.1 359 66-431 29-392 (513)
9 KOG0340 ATP-dependent RNA heli 100.0 8.8E-65 1.9E-69 520.7 29.5 371 64-441 5-383 (442)
10 KOG0328 Predicted ATP-dependen 100.0 2.1E-62 4.5E-67 489.1 28.9 369 62-441 23-395 (400)
11 KOG0333 U5 snRNP-like RNA heli 100.0 5E-62 1.1E-66 520.7 32.7 362 62-430 241-634 (673)
12 PRK04837 ATP-dependent RNA hel 100.0 1.8E-60 3.9E-65 535.1 41.1 360 65-431 7-373 (423)
13 PRK11634 ATP-dependent RNA hel 100.0 3.7E-59 8.1E-64 542.4 47.5 366 66-442 6-375 (629)
14 PTZ00110 helicase; Provisional 100.0 1.8E-59 4E-64 539.8 43.2 364 62-430 126-494 (545)
15 PRK11776 ATP-dependent RNA hel 100.0 9E-59 2E-63 526.7 42.5 360 66-437 4-367 (460)
16 PRK04537 ATP-dependent RNA hel 100.0 1.4E-58 3E-63 534.5 42.7 360 66-431 9-375 (572)
17 PRK10590 ATP-dependent RNA hel 100.0 2.1E-58 4.5E-63 522.5 42.6 358 67-431 2-363 (456)
18 KOG0326 ATP-dependent RNA heli 100.0 2.9E-60 6.3E-65 480.5 21.2 365 64-440 83-450 (459)
19 PLN00206 DEAD-box ATP-dependen 100.0 1.4E-57 3.1E-62 522.3 42.8 361 63-429 118-484 (518)
20 KOG0346 RNA helicase [RNA proc 100.0 6.9E-59 1.5E-63 487.8 28.7 360 65-428 18-418 (569)
21 PRK11192 ATP-dependent RNA hel 100.0 2.4E-57 5.2E-62 511.5 43.1 358 67-430 2-362 (434)
22 KOG0336 ATP-dependent RNA heli 100.0 1.3E-58 2.9E-63 480.7 26.4 362 63-430 216-582 (629)
23 KOG0335 ATP-dependent RNA heli 100.0 1E-57 2.2E-62 494.8 28.0 360 64-428 72-452 (482)
24 KOG0347 RNA helicase [RNA proc 100.0 4.3E-58 9.2E-63 492.4 21.8 362 64-431 179-581 (731)
25 PRK01297 ATP-dependent RNA hel 100.0 3.2E-55 6.9E-60 499.3 46.6 362 63-431 84-453 (475)
26 KOG0341 DEAD-box protein abstr 100.0 6.7E-58 1.5E-62 472.6 17.0 359 62-428 166-537 (610)
27 KOG0339 ATP-dependent RNA heli 100.0 5.6E-56 1.2E-60 471.6 30.0 366 59-430 216-585 (731)
28 PTZ00424 helicase 45; Provisio 100.0 9.2E-54 2E-58 477.4 42.0 364 65-438 27-393 (401)
29 KOG0350 DEAD-box ATP-dependent 100.0 3.2E-54 6.9E-59 458.9 30.4 362 64-430 125-550 (620)
30 KOG0332 ATP-dependent RNA heli 100.0 6.6E-54 1.4E-58 442.8 25.7 362 58-431 82-455 (477)
31 KOG0334 RNA helicase [RNA proc 100.0 1.4E-53 3E-58 490.4 27.5 363 62-430 361-730 (997)
32 KOG0337 ATP-dependent RNA heli 100.0 1.9E-53 4.2E-58 445.1 21.7 429 64-507 19-469 (529)
33 KOG4284 DEAD box protein [Tran 100.0 7.2E-53 1.6E-57 457.7 26.2 349 63-422 22-381 (980)
34 KOG0327 Translation initiation 100.0 1.3E-52 2.9E-57 437.5 24.9 366 65-442 25-393 (397)
35 TIGR03817 DECH_helic helicase/ 100.0 1.3E-49 2.7E-54 471.0 40.0 372 72-459 20-428 (742)
36 PLN03137 ATP-dependent DNA hel 100.0 1.4E-46 2.9E-51 442.9 40.8 340 67-431 436-798 (1195)
37 KOG0344 ATP-dependent RNA heli 100.0 1.2E-47 2.6E-52 418.4 27.0 367 60-430 126-505 (593)
38 TIGR00614 recQ_fam ATP-depende 100.0 2E-46 4.4E-51 426.0 36.5 322 83-430 6-343 (470)
39 PRK11057 ATP-dependent DNA hel 100.0 6E-45 1.3E-49 424.8 36.6 333 72-431 8-354 (607)
40 PRK13767 ATP-dependent helicas 100.0 3.3E-43 7.2E-48 423.9 40.3 377 73-459 18-440 (876)
41 PRK02362 ski2-like helicase; P 100.0 1.9E-43 4.2E-48 421.6 37.9 337 67-421 2-398 (737)
42 TIGR01389 recQ ATP-dependent D 100.0 2.6E-43 5.6E-48 411.5 37.0 327 80-433 4-344 (591)
43 PRK00254 ski2-like helicase; P 100.0 6.2E-42 1.3E-46 407.7 38.7 345 67-428 2-397 (720)
44 KOG0329 ATP-dependent RNA heli 100.0 1.2E-43 2.7E-48 350.0 18.8 322 65-430 41-366 (387)
45 TIGR00580 mfd transcription-re 100.0 2.1E-41 4.6E-46 404.8 38.6 320 74-420 437-770 (926)
46 TIGR02621 cas3_GSU0051 CRISPR- 100.0 8.7E-42 1.9E-46 397.7 34.3 313 84-419 12-390 (844)
47 PRK10917 ATP-dependent DNA hel 100.0 1.4E-40 3E-45 392.3 37.9 371 77-476 251-659 (681)
48 PRK10689 transcription-repair 100.0 3.8E-40 8.2E-45 401.7 41.2 318 74-419 587-918 (1147)
49 PRK01172 ski2-like helicase; P 100.0 1.9E-40 4.2E-45 392.9 36.3 347 67-436 2-396 (674)
50 COG1201 Lhr Lhr-like helicases 100.0 3.3E-40 7.2E-45 382.5 36.3 372 73-459 8-404 (814)
51 TIGR00643 recG ATP-dependent D 100.0 1.9E-39 4E-44 380.3 37.4 317 75-417 223-563 (630)
52 PRK09751 putative ATP-dependen 100.0 1.3E-38 2.9E-43 389.9 35.3 344 108-459 1-427 (1490)
53 PHA02653 RNA helicase NPH-II; 100.0 4.9E-38 1.1E-42 364.6 32.3 312 90-422 166-516 (675)
54 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.1E-37 2.4E-42 369.4 33.4 304 94-423 8-339 (819)
55 PRK09401 reverse gyrase; Revie 100.0 5.7E-38 1.2E-42 383.5 30.9 297 84-407 77-431 (1176)
56 COG0514 RecQ Superfamily II DN 100.0 1.5E-37 3.3E-42 349.0 28.4 328 79-434 7-351 (590)
57 PRK11664 ATP-dependent RNA hel 100.0 4.1E-37 8.8E-42 365.4 30.7 303 94-422 11-341 (812)
58 PRK12898 secA preprotein trans 100.0 3.8E-36 8.3E-41 343.9 32.7 318 84-422 100-588 (656)
59 PRK14701 reverse gyrase; Provi 100.0 1.8E-36 3.9E-41 377.3 31.2 330 76-431 67-467 (1638)
60 TIGR01587 cas3_core CRISPR-ass 100.0 1.9E-36 4.1E-41 333.2 27.2 299 105-419 1-335 (358)
61 TIGR01054 rgy reverse gyrase. 100.0 3.8E-35 8.3E-40 359.2 35.2 288 77-391 67-408 (1171)
62 PHA02558 uvsW UvsW helicase; P 100.0 4.4E-35 9.5E-40 335.2 31.5 308 86-417 112-449 (501)
63 PRK09200 preprotein translocas 100.0 5.3E-35 1.2E-39 341.0 31.0 325 84-422 75-543 (790)
64 KOG0349 Putative DEAD-box RNA 100.0 4.6E-36 9.9E-41 314.3 17.0 278 139-420 287-615 (725)
65 TIGR03714 secA2 accessory Sec 100.0 6.5E-34 1.4E-38 329.0 31.6 324 84-422 67-539 (762)
66 COG1202 Superfamily II helicas 100.0 4.7E-34 1E-38 308.6 24.9 334 66-420 194-553 (830)
67 COG1111 MPH1 ERCC4-like helica 100.0 6.6E-33 1.4E-37 299.0 33.1 328 85-423 12-484 (542)
68 TIGR03158 cas3_cyano CRISPR-as 100.0 3.1E-33 6.8E-38 306.7 30.5 292 92-405 1-357 (357)
69 PRK13766 Hef nuclease; Provisi 100.0 9.8E-33 2.1E-37 332.6 37.6 325 85-422 12-481 (773)
70 TIGR00963 secA preprotein tran 100.0 4E-33 8.6E-38 320.6 31.9 322 84-423 53-520 (745)
71 COG1204 Superfamily II helicas 100.0 1.7E-33 3.8E-38 330.7 28.9 343 72-429 15-418 (766)
72 COG1205 Distinct helicase fami 100.0 1.8E-32 3.9E-37 326.3 31.7 377 74-461 56-469 (851)
73 KOG0352 ATP-dependent DNA heli 100.0 6.1E-32 1.3E-36 283.5 23.4 332 76-431 6-373 (641)
74 PRK11131 ATP-dependent RNA hel 100.0 1.6E-31 3.5E-36 322.6 29.0 299 94-422 80-413 (1294)
75 KOG0351 ATP-dependent DNA heli 100.0 3.1E-31 6.7E-36 313.7 27.4 334 76-432 251-604 (941)
76 PRK05580 primosome assembly pr 100.0 6.5E-30 1.4E-34 300.8 36.2 318 88-429 144-558 (679)
77 TIGR00603 rad25 DNA repair hel 100.0 7.5E-31 1.6E-35 303.6 27.7 307 88-422 255-609 (732)
78 KOG0354 DEAD-box like helicase 100.0 3.2E-30 6.9E-35 293.0 29.5 328 84-422 58-531 (746)
79 TIGR01967 DEAH_box_HrpA ATP-de 100.0 3.5E-30 7.6E-35 312.2 29.7 314 84-422 60-406 (1283)
80 KOG0952 DNA/RNA helicase MER3/ 100.0 3E-30 6.5E-35 295.3 26.1 337 83-430 105-501 (1230)
81 PRK04914 ATP-dependent helicas 100.0 1.6E-28 3.4E-33 293.3 34.7 338 88-440 152-626 (956)
82 cd00268 DEADc DEAD-box helicas 100.0 4.2E-29 9.1E-34 252.5 24.5 202 68-272 1-202 (203)
83 COG1200 RecG RecG-like helicas 100.0 2.1E-28 4.5E-33 274.6 32.3 344 71-441 245-618 (677)
84 KOG0353 ATP-dependent DNA heli 100.0 4E-28 8.8E-33 251.1 25.7 335 67-425 72-472 (695)
85 PRK09694 helicase Cas3; Provis 100.0 2.9E-27 6.4E-32 280.9 33.1 313 87-409 285-664 (878)
86 TIGR00595 priA primosomal prot 100.0 1.2E-27 2.6E-32 272.5 28.5 298 107-428 1-389 (505)
87 PRK13104 secA preprotein trans 100.0 6E-27 1.3E-31 273.0 30.4 323 84-422 79-589 (896)
88 PRK12904 preprotein translocas 100.0 9.5E-27 2.1E-31 271.2 30.5 322 84-422 78-575 (830)
89 PRK12899 secA preprotein trans 100.0 3E-26 6.6E-31 266.5 32.1 148 69-226 65-228 (970)
90 COG1061 SSL2 DNA or RNA helica 100.0 9.9E-27 2.1E-31 261.8 26.6 294 87-407 35-376 (442)
91 COG1197 Mfd Transcription-repa 99.9 3.1E-25 6.8E-30 261.3 33.9 317 74-420 580-913 (1139)
92 KOG0951 RNA helicase BRR2, DEA 99.9 1.2E-25 2.6E-30 260.2 26.4 355 72-437 295-719 (1674)
93 PRK12906 secA preprotein trans 99.9 1.6E-25 3.6E-30 260.0 26.9 324 84-422 77-555 (796)
94 COG4581 Superfamily II RNA hel 99.9 1.7E-25 3.7E-30 263.5 26.4 317 82-420 114-537 (1041)
95 KOG0947 Cytoplasmic exosomal R 99.9 3.5E-25 7.6E-30 251.2 27.6 321 84-428 294-733 (1248)
96 PRK11448 hsdR type I restricti 99.9 2E-24 4.4E-29 263.4 31.6 307 87-409 412-802 (1123)
97 COG1643 HrpA HrpA-like helicas 99.9 1.1E-24 2.4E-29 255.4 23.6 309 90-421 52-388 (845)
98 PF00270 DEAD: DEAD/DEAH box h 99.9 2.1E-24 4.6E-29 211.0 19.6 165 90-260 1-168 (169)
99 COG4098 comFA Superfamily II D 99.9 6.9E-23 1.5E-27 211.4 30.7 313 88-430 97-426 (441)
100 PRK13107 preprotein translocas 99.9 1.4E-23 3E-28 244.2 28.4 323 84-422 79-593 (908)
101 KOG0950 DNA polymerase theta/e 99.9 2.1E-24 4.5E-29 247.1 21.1 342 72-434 207-625 (1008)
102 KOG0948 Nuclear exosomal RNA h 99.9 1.1E-24 2.4E-29 241.9 15.7 308 88-420 129-539 (1041)
103 KOG0922 DEAH-box RNA helicase 99.9 1.9E-23 4E-28 232.6 24.0 308 91-422 54-392 (674)
104 COG1203 CRISPR-associated heli 99.9 8.4E-23 1.8E-27 242.9 25.3 332 89-430 196-560 (733)
105 PLN03142 Probable chromatin-re 99.9 5.8E-22 1.3E-26 238.0 31.0 326 88-430 169-611 (1033)
106 KOG0923 mRNA splicing factor A 99.9 6.5E-22 1.4E-26 217.8 20.7 322 85-430 262-614 (902)
107 COG1198 PriA Primosomal protei 99.9 1.3E-20 2.9E-25 218.3 28.5 321 88-430 198-613 (730)
108 TIGR00631 uvrb excinuclease AB 99.9 5.2E-20 1.1E-24 215.0 33.1 134 294-431 423-564 (655)
109 TIGR01407 dinG_rel DnaQ family 99.9 1.8E-19 3.9E-24 218.5 34.8 332 73-420 231-814 (850)
110 KOG0924 mRNA splicing factor A 99.9 6.5E-21 1.4E-25 210.1 19.8 313 85-420 353-697 (1042)
111 KOG0920 ATP-dependent RNA heli 99.9 3.4E-20 7.4E-25 216.9 25.4 338 68-422 153-546 (924)
112 PRK12900 secA preprotein trans 99.9 3.4E-20 7.4E-25 216.8 25.2 126 293-423 578-714 (1025)
113 KOG0925 mRNA splicing factor A 99.8 3.6E-20 7.8E-25 198.1 19.5 329 63-420 22-387 (699)
114 COG1110 Reverse gyrase [DNA re 99.8 1.1E-18 2.3E-23 201.3 31.4 280 84-391 79-416 (1187)
115 PRK05298 excinuclease ABC subu 99.8 1.7E-18 3.7E-23 203.5 32.4 130 295-428 428-565 (652)
116 KOG0385 Chromatin remodeling c 99.8 1E-18 2.2E-23 195.7 26.4 337 88-441 167-621 (971)
117 KOG0926 DEAH-box RNA helicase 99.8 1.6E-19 3.4E-24 202.3 17.3 300 99-419 267-703 (1172)
118 smart00487 DEXDc DEAD-like hel 99.8 1.1E-18 2.5E-23 172.9 20.4 187 83-275 3-191 (201)
119 COG4096 HsdR Type I site-speci 99.8 1.5E-18 3.2E-23 197.8 23.0 298 87-407 164-525 (875)
120 COG0556 UvrB Helicase subunit 99.8 7.7E-18 1.7E-22 183.0 25.8 172 244-428 386-565 (663)
121 PRK12326 preprotein translocas 99.8 2.3E-17 5E-22 188.6 29.4 323 84-422 75-549 (764)
122 TIGR00348 hsdR type I site-spe 99.8 1E-17 2.2E-22 197.7 26.1 300 89-407 239-634 (667)
123 KOG0387 Transcription-coupled 99.8 3.5E-17 7.6E-22 184.5 24.1 313 88-416 205-652 (923)
124 PRK13103 secA preprotein trans 99.8 5.4E-17 1.2E-21 189.7 26.5 322 84-422 79-593 (913)
125 PRK07246 bifunctional ATP-depe 99.8 4.4E-16 9.6E-21 186.9 31.4 317 82-420 240-783 (820)
126 KOG0949 Predicted helicase, DE 99.8 3.7E-17 8E-22 186.8 20.8 162 88-260 511-677 (1330)
127 PRK12903 secA preprotein trans 99.7 1.1E-15 2.4E-20 177.0 28.2 322 84-422 75-541 (925)
128 KOG0384 Chromodomain-helicase 99.7 8.4E-17 1.8E-21 188.2 17.9 328 87-431 369-824 (1373)
129 KOG0390 DNA repair protein, SN 99.7 1.8E-15 3.9E-20 175.0 28.6 314 88-416 238-701 (776)
130 KOG1123 RNA polymerase II tran 99.7 2.4E-16 5.1E-21 169.5 18.3 294 88-409 302-636 (776)
131 CHL00122 secA preprotein trans 99.7 3.4E-15 7.4E-20 174.1 26.9 131 84-226 73-209 (870)
132 KOG4150 Predicted ATP-dependen 99.7 8.4E-16 1.8E-20 167.0 18.3 383 81-476 279-700 (1034)
133 PRK08074 bifunctional ATP-depe 99.7 3E-14 6.6E-19 174.0 34.2 110 310-420 751-893 (928)
134 cd00079 HELICc Helicase superf 99.7 6.3E-16 1.4E-20 144.0 14.6 118 296-416 11-131 (131)
135 KOG0389 SNF2 family DNA-depend 99.7 1.8E-15 3.9E-20 170.6 19.7 339 88-438 399-907 (941)
136 TIGR03117 cas_csf4 CRISPR-asso 99.7 8.1E-14 1.7E-18 161.1 33.3 88 300-392 460-561 (636)
137 PRK12902 secA preprotein trans 99.7 3.5E-14 7.5E-19 165.4 28.4 131 84-226 82-218 (939)
138 cd00046 DEXDc DEAD-like helica 99.7 3.6E-15 7.8E-20 139.0 16.7 144 104-254 1-144 (144)
139 KOG0392 SNF2 family DNA-depend 99.7 9.4E-15 2E-19 170.6 23.4 318 88-415 975-1447(1549)
140 KOG0953 Mitochondrial RNA heli 99.6 4.7E-15 1E-19 161.9 18.2 305 104-461 192-513 (700)
141 KOG1000 Chromatin remodeling p 99.6 3.7E-14 8.1E-19 152.8 19.7 310 88-417 198-598 (689)
142 KOG0951 RNA helicase BRR2, DEA 99.6 1.7E-14 3.6E-19 168.8 17.7 320 88-436 1143-1510(1674)
143 COG4889 Predicted helicase [Ge 99.6 1.6E-14 3.5E-19 163.4 16.1 313 84-409 157-574 (1518)
144 PF04851 ResIII: Type III rest 99.6 1.3E-14 2.9E-19 143.1 13.3 153 88-255 3-183 (184)
145 PF00271 Helicase_C: Helicase 99.6 5.5E-15 1.2E-19 126.0 9.0 76 330-408 2-78 (78)
146 COG1199 DinG Rad3-related DNA 99.5 2.3E-12 5.1E-17 153.2 29.8 114 300-419 469-616 (654)
147 TIGR02562 cas3_yersinia CRISPR 99.5 1.3E-12 2.9E-17 154.4 24.1 310 88-409 408-881 (1110)
148 PRK14873 primosome assembly pr 99.5 3.3E-12 7.2E-17 149.5 26.4 287 107-430 164-548 (665)
149 PF13959 DUF4217: Domain of un 99.5 3.8E-14 8.3E-19 116.2 6.7 64 447-510 1-65 (65)
150 PRK11747 dinG ATP-dependent DN 99.5 7.1E-11 1.5E-15 140.4 34.4 104 311-420 534-674 (697)
151 smart00490 HELICc helicase sup 99.4 7E-13 1.5E-17 112.8 8.9 80 326-408 2-82 (82)
152 KOG0386 Chromatin remodeling c 99.4 1.5E-12 3.2E-17 150.6 13.6 318 87-420 393-836 (1157)
153 TIGR00604 rad3 DNA repair heli 99.4 1.8E-10 3.8E-15 137.8 31.8 74 84-161 6-83 (705)
154 PRK12901 secA preprotein trans 99.4 2E-11 4.3E-16 144.0 22.6 125 293-422 608-743 (1112)
155 PF06862 DUF1253: Protein of u 99.4 2.5E-10 5.4E-15 126.4 28.4 290 136-428 35-423 (442)
156 KOG0388 SNF2 family DNA-depend 99.3 5.8E-11 1.2E-15 132.6 18.5 102 311-415 1044-1147(1185)
157 KOG4439 RNA polymerase II tran 99.3 7.4E-11 1.6E-15 132.3 17.6 138 88-228 325-478 (901)
158 KOG1002 Nucleotide excision re 99.3 2.7E-10 5.7E-15 123.2 20.9 118 311-431 638-761 (791)
159 KOG0391 SNF2 family DNA-depend 99.3 4.8E-10 1E-14 130.7 23.8 109 311-422 1276-1387(1958)
160 PF02399 Herpes_ori_bp: Origin 99.2 4.9E-10 1.1E-14 130.0 21.2 287 106-421 52-389 (824)
161 COG0553 HepA Superfamily II DN 99.2 1.5E-09 3.2E-14 133.1 22.8 117 297-416 692-816 (866)
162 PF00176 SNF2_N: SNF2 family N 99.1 3.1E-10 6.7E-15 121.2 10.0 155 92-256 1-174 (299)
163 KOG2340 Uncharacterized conser 99.1 5.3E-09 1.1E-13 114.5 19.4 338 87-428 215-676 (698)
164 PF07652 Flavi_DEAD: Flaviviru 99.0 7.1E-10 1.5E-14 104.1 9.1 134 103-258 4-140 (148)
165 KOG1015 Transcription regulato 99.0 1.9E-08 4.1E-13 115.8 21.6 121 297-418 1126-1273(1567)
166 COG0610 Type I site-specific r 99.0 3.2E-08 6.9E-13 121.1 24.1 313 88-418 244-651 (962)
167 smart00488 DEXDc2 DEAD-like he 99.0 3.5E-09 7.7E-14 113.2 14.0 75 85-161 6-84 (289)
168 smart00489 DEXDc3 DEAD-like he 99.0 3.5E-09 7.7E-14 113.2 14.0 75 85-161 6-84 (289)
169 COG0653 SecA Preprotein transl 98.9 4.7E-08 1E-12 114.5 18.6 321 85-421 78-546 (822)
170 KOG1016 Predicted DNA helicase 98.8 1.9E-07 4.1E-12 105.8 18.5 110 311-421 719-848 (1387)
171 KOG0921 Dosage compensation co 98.8 1.1E-07 2.4E-12 109.5 15.3 303 102-419 392-773 (1282)
172 PF07517 SecA_DEAD: SecA DEAD- 98.7 1.9E-07 4.1E-12 97.9 13.3 132 83-226 73-210 (266)
173 KOG0952 DNA/RNA helicase MER3/ 98.5 2.8E-08 6.1E-13 116.4 1.4 232 88-333 927-1175(1230)
174 PRK15483 type III restriction- 98.3 5.4E-06 1.2E-10 99.6 14.0 69 362-431 501-579 (986)
175 PF13086 AAA_11: AAA domain; P 98.2 8.5E-06 1.8E-10 83.3 10.0 72 88-160 1-75 (236)
176 PF13604 AAA_30: AAA domain; P 98.1 1.7E-05 3.7E-10 80.1 10.8 124 88-253 1-130 (196)
177 PF13872 AAA_34: P-loop contai 98.0 4.7E-05 1E-09 80.4 12.8 162 88-261 37-227 (303)
178 COG3587 Restriction endonuclea 98.0 0.00014 3E-09 84.8 16.1 69 362-431 483-564 (985)
179 PF02562 PhoH: PhoH-like prote 97.9 1.6E-05 3.4E-10 80.4 6.5 136 86-253 2-155 (205)
180 PF13307 Helicase_C_2: Helicas 97.9 4.4E-05 9.5E-10 75.1 8.2 110 304-419 3-149 (167)
181 KOG1001 Helicase-like transcri 97.8 0.00011 2.3E-09 86.7 12.0 100 313-415 541-643 (674)
182 TIGR01447 recD exodeoxyribonuc 97.8 0.00023 4.9E-09 83.3 13.9 144 90-253 147-295 (586)
183 TIGR00596 rad1 DNA repair prot 97.8 0.00015 3.3E-09 87.1 12.7 68 187-255 6-73 (814)
184 PRK10875 recD exonuclease V su 97.8 0.00017 3.8E-09 84.5 12.3 144 89-253 153-301 (615)
185 COG3421 Uncharacterized protei 97.7 0.00026 5.7E-09 79.6 12.4 143 108-257 2-168 (812)
186 TIGR01448 recD_rel helicase, p 97.7 0.00045 9.7E-09 83.0 14.7 130 83-253 319-452 (720)
187 PRK10536 hypothetical protein; 97.6 0.0012 2.5E-08 68.9 14.5 148 84-250 55-209 (262)
188 PF09848 DUF2075: Uncharacteri 97.6 0.00023 5.1E-09 78.5 9.9 107 106-240 4-117 (352)
189 KOG1803 DNA helicase [Replicat 97.6 0.0002 4.3E-09 81.0 9.0 65 88-159 185-250 (649)
190 TIGR00376 DNA helicase, putati 97.6 0.00047 1E-08 81.7 11.9 66 88-160 157-223 (637)
191 KOG1802 RNA helicase nonsense 97.5 0.00048 1E-08 78.2 10.3 77 80-162 402-478 (935)
192 PF13245 AAA_19: Part of AAA d 97.4 0.00051 1.1E-08 58.3 7.5 60 96-158 2-62 (76)
193 PF00580 UvrD-helicase: UvrD/R 97.3 0.00082 1.8E-08 72.1 9.4 124 89-223 1-125 (315)
194 PRK13889 conjugal transfer rel 97.1 0.0063 1.4E-07 74.9 15.0 126 84-253 343-470 (988)
195 PF12340 DUF3638: Protein of u 97.1 0.0048 1E-07 63.2 11.7 126 68-202 5-144 (229)
196 PF13401 AAA_22: AAA domain; P 97.1 0.0016 3.5E-08 60.5 7.4 17 103-119 4-20 (131)
197 TIGR02768 TraA_Ti Ti-type conj 97.0 0.0098 2.1E-07 71.9 15.5 59 88-153 352-411 (744)
198 KOG1805 DNA replication helica 97.0 0.0022 4.9E-08 76.0 9.5 135 72-227 657-810 (1100)
199 PRK04296 thymidine kinase; Pro 96.8 0.005 1.1E-07 61.8 8.6 109 104-253 3-114 (190)
200 PRK13826 Dtr system oriT relax 96.8 0.022 4.7E-07 70.7 15.5 138 72-253 366-505 (1102)
201 PRK12723 flagellar biosynthesi 96.7 0.02 4.3E-07 63.8 13.4 122 104-257 175-300 (388)
202 KOG1132 Helicase of the DEAD s 96.7 0.0092 2E-07 70.4 10.9 76 88-163 21-135 (945)
203 TIGR02760 TraI_TIGR conjugativ 96.7 0.085 1.8E-06 70.0 20.7 209 88-334 429-649 (1960)
204 PF05970 PIF1: PIF1-like helic 96.6 0.0078 1.7E-07 66.8 9.4 59 88-153 1-65 (364)
205 cd00009 AAA The AAA+ (ATPases 96.5 0.029 6.2E-07 52.0 11.4 17 103-119 19-35 (151)
206 KOG0298 DEAD box-containing he 96.5 0.0071 1.5E-07 73.7 8.5 155 103-262 374-558 (1394)
207 smart00382 AAA ATPases associa 96.5 0.0072 1.6E-07 55.5 6.8 42 103-151 2-43 (148)
208 PRK08181 transposase; Validate 96.5 0.033 7.1E-07 59.1 12.5 108 100-256 103-211 (269)
209 PRK06526 transposase; Provisio 96.4 0.014 3.1E-07 61.3 9.4 46 212-257 158-204 (254)
210 cd01120 RecA-like_NTPases RecA 96.4 0.07 1.5E-06 50.8 13.6 44 212-255 84-137 (165)
211 PRK14974 cell division protein 96.4 0.036 7.9E-07 60.5 12.6 54 212-265 221-275 (336)
212 COG1875 NYN ribonuclease and A 96.3 0.016 3.5E-07 62.5 9.0 65 83-151 223-289 (436)
213 PRK14722 flhF flagellar biosyn 96.3 0.028 6E-07 62.2 11.2 129 103-265 137-269 (374)
214 KOG0989 Replication factor C, 96.3 0.015 3.2E-07 61.4 8.3 48 208-256 124-171 (346)
215 PF14617 CMS1: U3-containing 9 96.1 0.013 2.7E-07 61.2 7.0 86 136-223 124-211 (252)
216 smart00492 HELICc3 helicase su 96.1 0.042 9E-07 52.5 10.0 72 346-418 30-136 (141)
217 PF00448 SRP54: SRP54-type pro 96.1 0.021 4.7E-07 57.6 8.3 127 106-263 4-134 (196)
218 PRK11889 flhF flagellar biosyn 96.0 0.08 1.7E-06 58.6 13.0 129 104-265 242-374 (436)
219 PRK07952 DNA replication prote 95.9 0.1 2.2E-06 54.6 12.3 106 104-256 100-207 (244)
220 PHA02533 17 large terminase pr 95.8 0.14 3.1E-06 59.5 14.4 148 88-254 59-210 (534)
221 smart00491 HELICc2 helicase su 95.8 0.054 1.2E-06 51.8 9.1 67 351-418 32-137 (142)
222 PRK12377 putative replication 95.7 0.22 4.7E-06 52.2 13.9 45 103-155 101-145 (248)
223 cd01124 KaiC KaiC is a circadi 95.6 0.12 2.7E-06 50.9 11.6 49 106-162 2-50 (187)
224 PRK14712 conjugal transfer nic 95.5 0.085 1.9E-06 67.7 12.1 64 88-154 835-900 (1623)
225 PRK08116 hypothetical protein; 95.5 0.16 3.5E-06 53.9 12.5 42 104-153 115-156 (268)
226 COG3973 Superfamily I DNA and 95.4 0.073 1.6E-06 60.9 9.7 91 72-163 188-285 (747)
227 PRK08727 hypothetical protein; 95.4 0.074 1.6E-06 55.2 9.3 46 212-257 92-139 (233)
228 PRK13709 conjugal transfer nic 95.4 0.12 2.5E-06 67.3 12.7 63 88-153 967-1031(1747)
229 PRK14721 flhF flagellar biosyn 95.3 0.45 9.8E-06 53.6 15.7 130 103-264 191-322 (420)
230 PF03354 Terminase_1: Phage Te 95.3 0.069 1.5E-06 61.5 9.6 150 91-251 1-160 (477)
231 PRK05703 flhF flagellar biosyn 95.3 0.31 6.7E-06 55.2 14.5 128 103-264 221-353 (424)
232 PRK05642 DNA replication initi 95.2 0.097 2.1E-06 54.3 9.6 44 213-256 97-141 (234)
233 PRK11054 helD DNA helicase IV; 95.2 0.07 1.5E-06 63.9 9.5 71 87-162 195-265 (684)
234 COG4962 CpaF Flp pilus assembl 95.2 0.061 1.3E-06 58.0 7.9 79 62-153 136-215 (355)
235 PRK00149 dnaA chromosomal repl 95.1 0.13 2.8E-06 58.8 10.8 44 104-153 149-192 (450)
236 TIGR02785 addA_Gpos recombinat 95.0 0.11 2.3E-06 66.7 11.0 124 88-224 1-126 (1232)
237 PRK10919 ATP-dependent DNA hel 95.0 0.046 1E-06 65.5 7.3 70 88-162 2-71 (672)
238 TIGR03420 DnaA_homol_Hda DnaA 95.0 0.1 2.2E-06 53.3 8.9 42 214-255 91-133 (226)
239 KOG1131 RNA polymerase II tran 95.0 0.2 4.4E-06 56.3 11.4 73 85-160 13-89 (755)
240 COG1419 FlhF Flagellar GTP-bin 95.0 0.45 9.7E-06 52.7 14.0 123 103-257 203-326 (407)
241 PRK07003 DNA polymerase III su 95.0 0.27 5.8E-06 58.7 13.0 40 212-253 118-157 (830)
242 PRK14958 DNA polymerase III su 94.9 0.14 3.1E-06 59.2 10.6 39 212-251 118-156 (509)
243 PRK06893 DNA replication initi 94.9 0.094 2E-06 54.2 8.3 46 212-257 90-137 (229)
244 PRK14087 dnaA chromosomal repl 94.9 0.21 4.5E-06 57.1 11.7 110 104-258 142-253 (450)
245 PRK13833 conjugal transfer pro 94.9 0.085 1.8E-06 57.3 8.1 68 77-151 119-187 (323)
246 PRK13894 conjugal transfer ATP 94.8 0.083 1.8E-06 57.4 7.9 70 75-151 121-191 (319)
247 PRK14964 DNA polymerase III su 94.8 0.21 4.5E-06 57.4 11.2 41 212-254 115-155 (491)
248 PRK05707 DNA polymerase III su 94.7 0.09 1.9E-06 57.4 8.0 35 88-122 3-41 (328)
249 PF00308 Bac_DnaA: Bacterial d 94.7 0.21 4.5E-06 51.4 10.1 106 106-258 37-144 (219)
250 TIGR00362 DnaA chromosomal rep 94.7 0.18 3.8E-06 56.8 10.5 38 104-146 137-174 (405)
251 PRK07764 DNA polymerase III su 94.7 0.19 4.2E-06 61.3 11.3 39 212-251 119-157 (824)
252 TIGR01074 rep ATP-dependent DN 94.6 0.15 3.2E-06 61.3 10.3 90 89-204 2-91 (664)
253 PRK06921 hypothetical protein; 94.6 0.54 1.2E-05 49.8 13.3 43 103-152 117-159 (266)
254 PRK12323 DNA polymerase III su 94.5 0.18 4E-06 59.2 10.2 39 212-251 123-161 (700)
255 TIGR01547 phage_term_2 phage t 94.5 0.17 3.7E-06 56.7 9.8 147 105-266 3-152 (396)
256 PLN03025 replication factor C 94.5 0.44 9.6E-06 51.8 12.7 40 212-253 98-137 (319)
257 TIGR02782 TrbB_P P-type conjug 94.5 0.11 2.3E-06 56.1 7.7 71 74-151 104-175 (299)
258 PHA02544 44 clamp loader, smal 94.4 0.22 4.8E-06 53.9 10.2 39 213-251 100-138 (316)
259 PRK12727 flagellar biosynthesi 94.4 1.5 3.3E-05 50.6 17.0 119 102-255 349-470 (559)
260 PRK14086 dnaA chromosomal repl 94.4 0.81 1.8E-05 53.7 15.0 47 212-258 376-424 (617)
261 KOG0383 Predicted helicase [Ge 94.3 0.016 3.4E-07 68.1 1.1 62 311-375 631-696 (696)
262 COG0470 HolB ATPase involved i 94.3 0.21 4.5E-06 53.9 9.8 39 212-251 108-146 (325)
263 TIGR02881 spore_V_K stage V sp 94.2 0.18 3.9E-06 53.2 8.7 16 104-119 43-58 (261)
264 PRK06731 flhF flagellar biosyn 94.2 1.9 4.2E-05 45.8 16.2 130 102-265 74-208 (270)
265 PRK12726 flagellar biosynthesi 94.2 1.1 2.5E-05 49.6 14.8 19 103-121 206-224 (407)
266 PTZ00112 origin recognition co 94.2 0.56 1.2E-05 56.7 13.1 41 212-253 868-909 (1164)
267 PRK07994 DNA polymerase III su 94.1 0.43 9.3E-06 56.6 12.3 38 212-250 118-155 (647)
268 PRK09183 transposase/IS protei 94.1 0.35 7.6E-06 51.0 10.6 21 100-120 99-119 (259)
269 PF05127 Helicase_RecD: Helica 94.1 0.036 7.9E-07 54.8 2.8 124 107-255 1-124 (177)
270 PRK11773 uvrD DNA-dependent he 94.1 0.11 2.3E-06 63.1 7.4 71 87-162 8-78 (721)
271 PF13871 Helicase_C_4: Helicas 94.1 0.2 4.4E-06 53.0 8.5 77 354-430 52-140 (278)
272 PRK06645 DNA polymerase III su 94.0 0.31 6.7E-06 56.3 10.7 20 104-123 44-63 (507)
273 PRK08769 DNA polymerase III su 94.0 0.46 9.9E-06 51.7 11.4 142 86-253 2-152 (319)
274 KOG0991 Replication factor C, 94.0 0.087 1.9E-06 53.7 5.2 42 211-253 111-152 (333)
275 PRK14088 dnaA chromosomal repl 93.9 0.37 8.1E-06 54.9 11.1 38 104-146 131-168 (440)
276 PRK08084 DNA replication initi 93.9 0.28 6E-06 51.0 9.3 42 214-255 98-141 (235)
277 COG1484 DnaC DNA replication p 93.9 0.31 6.7E-06 51.3 9.6 49 102-158 104-152 (254)
278 PF00004 AAA: ATPase family as 93.9 0.091 2E-06 48.4 5.1 14 106-119 1-14 (132)
279 PRK14961 DNA polymerase III su 93.9 0.63 1.4E-05 51.6 12.6 38 212-250 118-155 (363)
280 TIGR01075 uvrD DNA helicase II 93.9 0.12 2.6E-06 62.5 7.4 71 87-162 3-73 (715)
281 PF13177 DNA_pol3_delta2: DNA 93.8 0.87 1.9E-05 44.4 12.1 42 212-254 101-142 (162)
282 TIGR02928 orc1/cdc6 family rep 93.8 0.51 1.1E-05 52.1 11.7 24 104-128 41-64 (365)
283 PRK08691 DNA polymerase III su 93.8 0.27 5.9E-06 58.3 9.7 39 212-251 118-156 (709)
284 PRK14960 DNA polymerase III su 93.8 0.2 4.3E-06 59.0 8.5 40 212-253 117-156 (702)
285 PRK04195 replication factor C 93.8 0.37 8E-06 55.6 10.8 42 66-119 11-55 (482)
286 PRK14956 DNA polymerase III su 93.7 0.29 6.4E-06 55.8 9.6 17 106-122 43-59 (484)
287 PRK14955 DNA polymerase III su 93.7 0.87 1.9E-05 51.2 13.4 40 212-253 126-165 (397)
288 TIGR01425 SRP54_euk signal rec 93.7 0.54 1.2E-05 53.0 11.6 131 105-265 102-235 (429)
289 PRK08903 DnaA regulatory inact 93.7 0.31 6.8E-06 50.0 9.2 42 213-255 90-132 (227)
290 TIGR01073 pcrA ATP-dependent D 93.7 0.27 5.8E-06 59.8 9.9 71 87-162 3-73 (726)
291 PRK14969 DNA polymerase III su 93.7 0.59 1.3E-05 54.5 12.3 39 212-251 118-156 (527)
292 TIGR02640 gas_vesic_GvpN gas v 93.7 0.58 1.3E-05 49.4 11.3 27 94-120 12-38 (262)
293 PRK09111 DNA polymerase III su 93.6 0.42 9.1E-06 56.4 11.1 39 212-251 131-169 (598)
294 PHA03333 putative ATPase subun 93.6 1 2.2E-05 53.2 13.7 148 89-254 170-332 (752)
295 PRK08533 flagellar accessory p 93.6 0.79 1.7E-05 47.5 11.9 53 102-162 23-75 (230)
296 TIGR02760 TraI_TIGR conjugativ 93.6 0.23 4.9E-06 66.1 9.7 62 87-154 1018-1084(1960)
297 PRK14951 DNA polymerase III su 93.5 0.38 8.3E-06 56.8 10.3 42 212-255 123-164 (618)
298 PRK14723 flhF flagellar biosyn 93.4 0.34 7.5E-06 58.1 9.9 118 104-255 186-306 (767)
299 PRK00411 cdc6 cell division co 93.4 0.46 1E-05 53.0 10.7 24 104-128 56-79 (394)
300 PRK06835 DNA replication prote 93.4 0.56 1.2E-05 51.2 10.9 44 102-153 182-225 (329)
301 PRK14965 DNA polymerase III su 93.4 0.45 9.7E-06 56.1 10.7 42 212-255 118-159 (576)
302 PRK12724 flagellar biosynthesi 93.4 1.2 2.6E-05 50.1 13.4 124 106-265 226-356 (432)
303 cd01122 GP4d_helicase GP4d_hel 93.3 0.28 6E-06 51.8 8.2 41 100-146 27-67 (271)
304 PRK12402 replication factor C 93.3 0.69 1.5E-05 50.3 11.5 39 212-251 124-162 (337)
305 PRK05563 DNA polymerase III su 93.2 0.46 1E-05 55.7 10.5 41 212-254 118-158 (559)
306 PRK11331 5-methylcytosine-spec 93.2 0.4 8.7E-06 54.2 9.5 32 89-120 180-211 (459)
307 TIGR00064 ftsY signal recognit 93.2 1.1 2.4E-05 47.6 12.4 54 212-265 153-213 (272)
308 PRK07940 DNA polymerase III su 93.2 1.1 2.3E-05 50.3 12.9 44 212-257 116-159 (394)
309 KOG1513 Nuclear helicase MOP-3 93.2 0.12 2.7E-06 60.4 5.4 167 88-265 264-468 (1300)
310 PRK14954 DNA polymerase III su 93.1 0.62 1.3E-05 55.1 11.3 39 212-251 126-164 (620)
311 PRK00771 signal recognition pa 93.1 1.1 2.5E-05 50.7 13.0 48 215-262 177-225 (437)
312 PRK14952 DNA polymerase III su 93.1 0.52 1.1E-05 55.4 10.6 42 212-255 117-158 (584)
313 cd00561 CobA_CobO_BtuR ATP:cor 93.0 0.85 1.8E-05 44.4 10.3 54 211-264 93-148 (159)
314 PRK05986 cob(I)alamin adenolsy 93.0 0.32 6.9E-06 48.7 7.5 146 102-265 21-169 (191)
315 PRK06871 DNA polymerase III su 93.0 0.46 1E-05 51.7 9.3 40 212-252 106-145 (325)
316 PRK05896 DNA polymerase III su 92.8 0.4 8.7E-06 56.2 9.0 42 212-255 118-159 (605)
317 PRK09112 DNA polymerase III su 92.8 0.65 1.4E-05 51.3 10.3 39 212-251 140-178 (351)
318 PRK06995 flhF flagellar biosyn 92.8 0.51 1.1E-05 54.0 9.6 17 103-119 256-272 (484)
319 TIGR00708 cobA cob(I)alamin ad 92.8 1.4 3E-05 43.5 11.4 53 212-264 96-150 (173)
320 PRK06964 DNA polymerase III su 92.7 0.52 1.1E-05 51.7 9.3 41 89-130 2-47 (342)
321 PRK09401 reverse gyrase; Revie 92.7 1.3 2.8E-05 56.5 13.9 71 138-219 328-405 (1176)
322 PRK14950 DNA polymerase III su 92.7 1.1 2.4E-05 53.0 12.7 40 212-253 119-158 (585)
323 PRK00440 rfc replication facto 92.7 1.5 3.2E-05 47.2 12.9 38 213-251 102-139 (319)
324 PRK12422 chromosomal replicati 92.7 0.58 1.3E-05 53.3 10.0 49 212-260 201-251 (445)
325 PRK14949 DNA polymerase III su 92.7 0.7 1.5E-05 56.2 11.0 43 212-256 118-160 (944)
326 PRK10867 signal recognition pa 92.6 0.95 2.1E-05 51.3 11.5 130 106-265 103-236 (433)
327 PRK14948 DNA polymerase III su 92.5 0.48 1E-05 56.2 9.4 19 104-122 39-57 (620)
328 COG1474 CDC6 Cdc6-related prot 92.5 1.1 2.5E-05 49.6 11.8 25 104-129 43-67 (366)
329 PRK07471 DNA polymerase III su 92.5 0.91 2E-05 50.4 11.0 61 190-253 120-180 (365)
330 PHA03368 DNA packaging termina 92.4 1.1 2.3E-05 52.8 11.7 138 102-256 253-392 (738)
331 PF06745 KaiC: KaiC; InterPro 92.4 0.4 8.6E-06 49.2 7.7 133 103-254 19-160 (226)
332 PF05621 TniB: Bacterial TniB 92.4 0.67 1.5E-05 49.6 9.3 115 104-250 62-186 (302)
333 PF05876 Terminase_GpA: Phage 92.4 0.29 6.2E-06 57.4 7.2 127 88-227 16-148 (557)
334 COG1444 Predicted P-loop ATPas 92.4 1.6 3.5E-05 52.2 13.3 150 81-256 207-358 (758)
335 COG0630 VirB11 Type IV secreto 92.3 0.48 1E-05 51.4 8.4 75 64-151 108-183 (312)
336 PRK13900 type IV secretion sys 92.2 0.31 6.6E-06 53.4 6.8 43 101-151 158-200 (332)
337 PRK13851 type IV secretion sys 92.2 0.2 4.3E-06 55.0 5.3 44 100-151 159-202 (344)
338 KOG0738 AAA+-type ATPase [Post 92.1 0.17 3.7E-06 55.2 4.4 56 64-119 181-261 (491)
339 cd01130 VirB11-like_ATPase Typ 92.1 0.34 7.4E-06 48.3 6.5 37 81-119 4-41 (186)
340 CHL00181 cbbX CbbX; Provisiona 92.0 0.55 1.2E-05 50.3 8.4 18 103-120 59-76 (287)
341 PRK06090 DNA polymerase III su 92.0 1.1 2.3E-05 48.8 10.6 41 212-253 107-147 (319)
342 PRK14957 DNA polymerase III su 92.0 0.9 2E-05 52.9 10.5 39 212-251 118-156 (546)
343 PRK06067 flagellar accessory p 91.9 0.54 1.2E-05 48.6 8.0 52 103-162 25-76 (234)
344 PF05729 NACHT: NACHT domain 91.9 0.81 1.7E-05 43.7 8.7 45 106-152 3-47 (166)
345 TIGR02880 cbbX_cfxQ probable R 91.9 0.73 1.6E-05 49.3 9.1 18 103-120 58-75 (284)
346 PRK10917 ATP-dependent DNA hel 91.9 0.77 1.7E-05 55.3 10.3 76 311-387 310-389 (681)
347 COG2804 PulE Type II secretory 91.8 0.33 7.1E-06 55.1 6.5 39 89-128 242-282 (500)
348 COG2909 MalT ATP-dependent tra 91.8 0.62 1.3E-05 55.7 8.9 43 214-256 130-172 (894)
349 PRK13342 recombination factor 91.6 1.1 2.3E-05 50.7 10.6 38 213-255 92-129 (413)
350 TIGR03819 heli_sec_ATPase heli 91.6 0.3 6.6E-06 53.6 5.9 68 74-151 150-218 (340)
351 PTZ00293 thymidine kinase; Pro 91.5 0.98 2.1E-05 46.0 9.0 39 103-148 4-42 (211)
352 cd00984 DnaB_C DnaB helicase C 91.5 0.32 6.9E-06 50.3 5.7 45 102-152 12-59 (242)
353 PRK08939 primosomal protein Dn 91.5 1 2.2E-05 48.7 9.7 26 103-129 156-181 (306)
354 PRK14962 DNA polymerase III su 91.4 1.5 3.3E-05 50.4 11.5 16 106-121 39-54 (472)
355 PF05496 RuvB_N: Holliday junc 91.3 0.35 7.5E-06 49.6 5.5 15 105-119 52-66 (233)
356 PRK08451 DNA polymerase III su 91.3 0.8 1.7E-05 53.2 9.1 39 212-251 116-154 (535)
357 TIGR03499 FlhF flagellar biosy 91.2 0.57 1.2E-05 50.1 7.4 17 104-120 195-211 (282)
358 KOG0742 AAA+-type ATPase [Post 91.1 0.58 1.3E-05 51.5 7.2 40 216-255 446-494 (630)
359 KOG1133 Helicase of the DEAD s 91.1 5.4 0.00012 46.9 15.2 107 309-418 627-778 (821)
360 TIGR03881 KaiC_arch_4 KaiC dom 91.1 2.3 4.9E-05 43.7 11.5 52 103-162 20-71 (229)
361 COG2805 PilT Tfp pilus assembl 91.0 0.53 1.2E-05 50.0 6.6 24 106-130 128-151 (353)
362 PF13173 AAA_14: AAA domain 91.0 1.5 3.3E-05 40.6 9.3 38 213-253 61-98 (128)
363 PRK14873 primosome assembly pr 90.9 1.5 3.3E-05 52.4 11.2 93 296-390 171-266 (665)
364 TIGR03015 pepcterm_ATPase puta 90.9 3.1 6.7E-05 43.6 12.6 32 88-119 23-59 (269)
365 KOG0701 dsRNA-specific nucleas 90.9 0.21 4.6E-06 63.7 4.2 95 312-408 293-399 (1606)
366 TIGR00643 recG ATP-dependent D 90.8 1.1 2.5E-05 53.4 10.2 76 311-387 284-363 (630)
367 PF02534 T4SS-DNA_transf: Type 90.8 0.23 5E-06 56.9 4.3 50 104-162 45-94 (469)
368 PRK05973 replicative DNA helic 90.8 0.51 1.1E-05 49.1 6.3 84 70-162 22-115 (237)
369 TIGR00763 lon ATP-dependent pr 90.7 0.73 1.6E-05 56.4 8.6 17 103-119 347-363 (775)
370 COG1435 Tdk Thymidine kinase [ 90.7 2.4 5.1E-05 42.5 10.5 104 104-241 5-109 (201)
371 cd01126 TraG_VirD4 The TraG/Tr 90.7 0.15 3.3E-06 56.9 2.6 48 105-161 1-48 (384)
372 PRK07993 DNA polymerase III su 90.6 0.5 1.1E-05 51.8 6.4 137 89-252 3-146 (334)
373 TIGR03689 pup_AAA proteasome A 90.6 0.89 1.9E-05 52.5 8.6 17 103-119 216-232 (512)
374 cd03115 SRP The signal recogni 90.6 3.5 7.7E-05 40.2 11.9 52 212-263 81-133 (173)
375 PRK11823 DNA repair protein Ra 90.6 1.1 2.3E-05 51.3 9.2 52 103-162 80-131 (446)
376 cd01121 Sms Sms (bacterial rad 90.6 2.1 4.5E-05 47.7 11.3 90 103-226 82-171 (372)
377 PF03237 Terminase_6: Terminas 90.3 4.7 0.0001 43.8 13.9 130 107-253 1-136 (384)
378 PRK14963 DNA polymerase III su 90.3 1.1 2.4E-05 51.9 9.1 16 106-121 39-54 (504)
379 PRK14959 DNA polymerase III su 90.2 0.76 1.6E-05 54.2 7.8 19 105-123 40-58 (624)
380 TIGR03878 thermo_KaiC_2 KaiC d 90.2 0.95 2.1E-05 47.7 7.9 37 103-146 36-72 (259)
381 PRK05580 primosome assembly pr 90.2 2 4.4E-05 51.7 11.6 77 311-390 190-267 (679)
382 TIGR00678 holB DNA polymerase 90.0 1.4 3.1E-05 43.8 8.6 40 212-253 95-134 (188)
383 PRK14953 DNA polymerase III su 89.9 1.7 3.7E-05 50.2 10.2 40 212-253 118-157 (486)
384 KOG2543 Origin recognition com 89.7 1.5 3.3E-05 48.0 8.9 139 88-257 9-161 (438)
385 COG2109 BtuR ATP:corrinoid ade 89.7 2.2 4.7E-05 42.5 9.2 135 106-265 31-176 (198)
386 COG2256 MGS1 ATPase related to 89.5 1.2 2.6E-05 49.2 8.0 34 215-253 106-139 (436)
387 PRK06305 DNA polymerase III su 89.4 3.2 7E-05 47.4 12.0 37 212-249 120-156 (451)
388 COG0552 FtsY Signal recognitio 89.4 3.5 7.6E-05 44.6 11.3 129 106-265 142-280 (340)
389 TIGR00595 priA primosomal prot 89.4 2.2 4.7E-05 49.6 10.6 76 311-389 25-101 (505)
390 PRK14971 DNA polymerase III su 89.4 2.9 6.4E-05 49.6 11.9 40 212-253 120-159 (614)
391 PRK07133 DNA polymerase III su 89.4 1.8 3.8E-05 52.0 10.0 51 199-253 106-156 (725)
392 TIGR00959 ffh signal recogniti 89.3 5.7 0.00012 45.0 13.6 53 213-265 182-235 (428)
393 PRK11034 clpA ATP-dependent Cl 89.2 1.2 2.6E-05 54.0 8.6 17 103-119 207-223 (758)
394 PRK04841 transcriptional regul 89.2 2.1 4.6E-05 53.2 11.2 42 215-256 123-164 (903)
395 PRK13897 type IV secretion sys 89.1 0.34 7.4E-06 57.1 3.8 50 104-162 159-208 (606)
396 TIGR02655 circ_KaiC circadian 89.0 2.4 5.3E-05 48.9 10.8 59 96-162 251-314 (484)
397 PRK13531 regulatory ATPase Rav 89.0 1.3 2.8E-05 50.6 8.2 26 94-119 30-55 (498)
398 PF02572 CobA_CobO_BtuR: ATP:c 89.0 4.4 9.5E-05 40.0 10.9 141 106-264 6-149 (172)
399 TIGR02397 dnaX_nterm DNA polym 89.0 2.6 5.7E-05 46.1 10.6 24 104-128 37-60 (355)
400 PRK14970 DNA polymerase III su 88.8 3.3 7.1E-05 45.9 11.3 16 104-119 40-55 (367)
401 PRK06620 hypothetical protein; 88.7 0.73 1.6E-05 47.2 5.5 16 104-119 45-60 (214)
402 TIGR02868 CydC thiol reductant 88.7 3.9 8.5E-05 47.6 12.3 39 212-250 487-525 (529)
403 TIGR03877 thermo_KaiC_1 KaiC d 88.6 0.74 1.6E-05 47.8 5.6 52 103-162 21-72 (237)
404 KOG2004 Mitochondrial ATP-depe 88.5 2.3 5E-05 50.2 9.7 96 88-227 415-519 (906)
405 KOG1133 Helicase of the DEAD s 88.4 0.63 1.4E-05 54.2 5.2 42 88-129 15-60 (821)
406 PF01443 Viral_helicase1: Vira 88.3 0.49 1.1E-05 48.4 4.0 14 106-119 1-14 (234)
407 COG1110 Reverse gyrase [DNA re 88.2 1.7 3.6E-05 53.0 8.6 73 299-372 113-191 (1187)
408 TIGR01243 CDC48 AAA family ATP 88.2 1.8 4E-05 52.6 9.4 17 103-119 212-228 (733)
409 PF01695 IstB_IS21: IstB-like 88.2 0.69 1.5E-05 45.9 4.8 45 101-153 45-89 (178)
410 PRK13341 recombination factor 88.2 2.2 4.7E-05 51.6 9.9 40 213-257 109-148 (725)
411 TIGR02788 VirB11 P-type DNA tr 88.1 0.72 1.6E-05 50.0 5.3 18 102-119 143-160 (308)
412 PRK07399 DNA polymerase III su 88.1 2.6 5.7E-05 45.8 9.7 59 190-252 103-161 (314)
413 PRK03992 proteasome-activating 88.1 1.8 3.9E-05 48.6 8.6 16 104-119 166-181 (389)
414 PRK08699 DNA polymerase III su 88.1 3.8 8.2E-05 44.8 10.8 42 212-255 112-153 (325)
415 TIGR00580 mfd transcription-re 88.0 2.5 5.5E-05 52.5 10.5 76 311-387 500-579 (926)
416 cd01129 PulE-GspE PulE/GspE Th 87.9 1.1 2.5E-05 47.3 6.5 60 81-150 59-120 (264)
417 TIGR02688 conserved hypothetic 87.8 1.5 3.2E-05 49.3 7.5 47 75-121 174-227 (449)
418 PRK13764 ATPase; Provisional 87.8 0.97 2.1E-05 53.1 6.4 42 102-150 256-297 (602)
419 TIGR03600 phage_DnaB phage rep 87.7 1.2 2.6E-05 50.4 7.0 38 102-145 193-230 (421)
420 KOG0058 Peptide exporter, ABC 87.7 2.7 5.8E-05 49.7 9.8 134 102-253 493-661 (716)
421 cd03221 ABCF_EF-3 ABCF_EF-3 E 87.7 3.3 7.3E-05 39.3 9.0 39 212-253 87-125 (144)
422 TIGR03880 KaiC_arch_3 KaiC dom 87.6 4.1 8.9E-05 41.7 10.3 52 103-162 16-67 (224)
423 PRK13695 putative NTPase; Prov 87.5 4.6 0.0001 39.5 10.2 16 105-120 2-17 (174)
424 TIGR02525 plasmid_TraJ plasmid 87.5 1.4 3.1E-05 48.9 7.3 43 103-150 149-191 (372)
425 PF12846 AAA_10: AAA-like doma 87.5 0.76 1.6E-05 48.7 5.0 43 103-152 1-43 (304)
426 PF03969 AFG1_ATPase: AFG1-lik 87.5 8.5 0.00018 42.7 13.2 109 103-257 62-171 (362)
427 COG1132 MdlB ABC-type multidru 87.4 3.5 7.7E-05 48.5 10.9 41 212-253 482-522 (567)
428 PF00437 T2SE: Type II/IV secr 87.3 0.45 9.7E-06 50.3 3.1 44 101-151 125-168 (270)
429 PRK10436 hypothetical protein; 87.3 1.2 2.5E-05 51.1 6.5 38 90-128 203-242 (462)
430 TIGR02533 type_II_gspE general 87.2 1.2 2.5E-05 51.5 6.6 44 81-128 221-266 (486)
431 TIGR02639 ClpA ATP-dependent C 87.2 5 0.00011 48.9 12.3 16 104-119 204-219 (731)
432 TIGR03346 chaperone_ClpB ATP-d 87.0 4.1 8.9E-05 50.5 11.6 17 104-120 195-211 (852)
433 TIGR00665 DnaB replicative DNA 87.0 4.2 9E-05 46.2 10.9 113 103-226 195-318 (434)
434 PRK07413 hypothetical protein; 87.0 10 0.00022 42.1 13.3 54 212-265 124-179 (382)
435 PRK08058 DNA polymerase III su 86.7 2.2 4.8E-05 46.6 8.2 40 212-253 109-148 (329)
436 PRK10865 protein disaggregatio 86.6 4.2 9.1E-05 50.3 11.3 16 104-119 200-215 (857)
437 PHA00729 NTP-binding motif con 86.5 3.6 7.8E-05 42.4 9.0 15 105-119 19-33 (226)
438 PRK10689 transcription-repair 86.5 3.6 7.7E-05 52.4 10.7 77 310-387 648-728 (1147)
439 TIGR02524 dot_icm_DotB Dot/Icm 86.4 1.3 2.9E-05 48.9 6.2 26 102-128 133-158 (358)
440 TIGR00635 ruvB Holliday juncti 86.3 2.4 5.3E-05 45.4 8.2 16 104-119 31-46 (305)
441 KOG0741 AAA+-type ATPase [Post 86.3 7.8 0.00017 44.4 11.9 68 71-147 494-573 (744)
442 COG0541 Ffh Signal recognition 86.3 6 0.00013 44.3 11.1 130 106-265 103-235 (451)
443 COG4626 Phage terminase-like p 86.2 6.5 0.00014 45.4 11.5 147 88-252 61-223 (546)
444 PRK07004 replicative DNA helic 86.1 1.3 2.8E-05 50.8 6.1 113 103-226 213-337 (460)
445 PRK13850 type IV secretion sys 86.1 0.64 1.4E-05 55.5 3.8 50 104-162 140-189 (670)
446 KOG0732 AAA+-type ATPase conta 86.0 1.5 3.4E-05 53.9 6.9 144 64-255 260-415 (1080)
447 PHA03372 DNA packaging termina 85.9 8.1 0.00018 45.2 12.2 130 104-254 203-337 (668)
448 PRK06647 DNA polymerase III su 85.7 4 8.6E-05 48.0 10.0 40 212-253 118-157 (563)
449 TIGR00416 sms DNA repair prote 85.6 4.5 9.7E-05 46.3 10.2 90 103-226 94-183 (454)
450 TIGR01241 FtsH_fam ATP-depende 85.5 3.9 8.4E-05 47.4 9.8 54 63-119 49-104 (495)
451 PRK10416 signal recognition pa 85.5 19 0.00041 39.2 14.5 54 212-265 195-255 (318)
452 COG0513 SrmB Superfamily II DN 85.3 3.1 6.6E-05 48.5 8.8 70 314-387 102-180 (513)
453 COG1219 ClpX ATP-dependent pro 85.3 0.57 1.2E-05 50.1 2.5 25 102-128 96-120 (408)
454 TIGR01243 CDC48 AAA family ATP 85.2 2.5 5.3E-05 51.5 8.3 52 65-119 449-503 (733)
455 KOG0339 ATP-dependent RNA heli 85.2 10 0.00023 43.0 12.2 178 311-505 295-493 (731)
456 PHA00350 putative assembly pro 85.2 2.8 6.1E-05 46.9 8.0 23 106-128 4-27 (399)
457 PRK07414 cob(I)yrinic acid a,c 85.1 3.8 8.2E-05 40.6 8.0 140 106-263 24-167 (178)
458 PHA03311 helicase-primase subu 84.9 9.6 0.00021 45.5 12.3 43 105-159 73-115 (828)
459 KOG1806 DEAD box containing he 84.9 1.5 3.3E-05 53.1 6.0 74 84-162 734-807 (1320)
460 PRK09087 hypothetical protein; 84.7 1.6 3.4E-05 45.2 5.4 40 215-256 89-129 (226)
461 cd00267 ABC_ATPase ABC (ATP-bi 84.5 4.3 9.3E-05 38.9 8.1 44 213-256 98-141 (157)
462 PRK13876 conjugal transfer cou 84.4 0.89 1.9E-05 54.2 3.9 49 104-161 145-193 (663)
463 cd03247 ABCC_cytochrome_bd The 84.4 6 0.00013 38.9 9.3 41 212-253 115-155 (178)
464 PF03266 NTPase_1: NTPase; In 84.4 1 2.2E-05 44.3 3.7 28 212-239 94-123 (168)
465 TIGR03743 SXT_TraD conjugative 84.4 2.1 4.6E-05 51.0 7.0 55 103-164 176-232 (634)
466 cd01131 PilT Pilus retraction 84.3 1.3 2.9E-05 44.5 4.7 39 106-150 4-42 (198)
467 TIGR02538 type_IV_pilB type IV 84.2 1.2 2.6E-05 52.4 4.9 44 81-128 295-340 (564)
468 PRK06904 replicative DNA helic 84.2 9.7 0.00021 43.8 12.1 115 103-227 221-348 (472)
469 PRK05748 replicative DNA helic 84.2 6.4 0.00014 45.0 10.7 113 103-226 203-327 (448)
470 COG2255 RuvB Holliday junction 84.2 2.1 4.5E-05 45.4 5.9 28 195-227 90-117 (332)
471 PRK00080 ruvB Holliday junctio 84.1 2.3 5E-05 46.4 6.8 16 104-119 52-67 (328)
472 KOG0739 AAA+-type ATPase [Post 84.1 9.5 0.00021 40.7 10.6 152 64-272 128-296 (439)
473 PF01637 Arch_ATPase: Archaeal 84.0 2.6 5.5E-05 42.6 6.7 55 195-254 105-165 (234)
474 KOG0733 Nuclear AAA ATPase (VC 83.8 3.5 7.6E-05 47.8 8.0 64 193-258 586-659 (802)
475 cd01393 recA_like RecA is a b 83.8 2 4.4E-05 43.8 5.9 45 103-148 19-63 (226)
476 TIGR02767 TraG-Ti Ti-type conj 83.7 0.95 2.1E-05 53.6 3.7 50 104-162 212-261 (623)
477 CHL00176 ftsH cell division pr 83.7 7.9 0.00017 46.2 11.3 41 215-255 277-330 (638)
478 COG0593 DnaA ATPase involved i 83.6 3.1 6.7E-05 46.6 7.5 47 213-259 175-223 (408)
479 PRK04328 hypothetical protein; 83.5 1.9 4.1E-05 45.2 5.5 52 103-162 23-74 (249)
480 PF10593 Z1: Z1 domain; Inter 83.5 3.7 7.9E-05 42.8 7.5 87 338-430 111-203 (239)
481 PRK13880 conjugal transfer cou 83.4 0.88 1.9E-05 54.2 3.3 46 104-158 176-221 (636)
482 PRK08840 replicative DNA helic 83.2 9.8 0.00021 43.7 11.6 49 103-158 217-265 (464)
483 PF02456 Adeno_IVa2: Adenoviru 83.1 1.5 3.2E-05 46.8 4.4 41 106-151 90-130 (369)
484 PRK06321 replicative DNA helic 83.0 9 0.0002 44.1 11.1 125 89-226 210-349 (472)
485 cd01127 TrwB Bacterial conjuga 82.9 1.2 2.5E-05 50.4 3.9 49 97-152 36-84 (410)
486 KOG0331 ATP-dependent RNA heli 82.9 22 0.00047 41.1 13.9 187 311-510 165-371 (519)
487 COG0210 UvrD Superfamily I DNA 82.9 2.6 5.5E-05 50.6 7.0 71 88-163 2-72 (655)
488 PF10412 TrwB_AAD_bind: Type I 82.8 1.2 2.6E-05 49.9 3.9 46 100-152 12-57 (386)
489 PRK13822 conjugal transfer cou 82.8 1 2.3E-05 53.5 3.6 49 104-161 225-273 (641)
490 PRK10787 DNA-binding ATP-depen 82.8 9.6 0.00021 46.7 11.8 30 195-228 402-431 (784)
491 COG0466 Lon ATP-dependent Lon 82.7 2.2 4.7E-05 50.4 5.9 48 190-241 398-445 (782)
492 PF06733 DEAD_2: DEAD_2; Inte 82.7 0.69 1.5E-05 45.5 1.7 46 182-228 113-160 (174)
493 PHA00012 I assembly protein 82.3 5.5 0.00012 43.2 8.3 23 106-128 4-26 (361)
494 PRK08760 replicative DNA helic 82.3 6.7 0.00015 45.2 9.8 113 104-226 230-352 (476)
495 cd03230 ABC_DR_subfamily_A Thi 82.1 4.7 0.0001 39.4 7.5 43 212-254 112-154 (173)
496 CHL00095 clpC Clp protease ATP 82.0 5.6 0.00012 49.1 9.6 17 104-120 201-217 (821)
497 cd00268 DEADc DEAD-box helicas 81.9 10 0.00022 37.8 9.9 74 310-387 68-149 (203)
498 TIGR02858 spore_III_AA stage I 81.8 12 0.00025 39.9 10.7 24 96-119 101-127 (270)
499 TIGR00602 rad24 checkpoint pro 81.7 14 0.00031 44.0 12.4 45 64-119 79-126 (637)
500 PF03796 DnaB_C: DnaB-like hel 81.6 1.6 3.4E-05 45.9 4.1 38 104-147 20-57 (259)
No 1
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-136 Score=1094.94 Aligned_cols=681 Identities=51% Similarity=0.803 Sum_probs=598.8
Q ss_pred hHHhhhhhHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCHHHHHHHHHCCCCCC
Q 004567 10 RKAVRSMEIEEIELLNSWIDSQKPESGTNPLSFPPLGKKEPIGRIGEDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKM 89 (744)
Q Consensus 10 ~~~~r~~~~~~~~~l~~~i~~~~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~l~ls~~~~~~L~~~gf~~~ 89 (744)
++..|+.++++|..|+..+.+ .+ ......|.+||||..++++|+..+|..|
T Consensus 42 ~k~~~~~Eee~i~~l~~ky~e----------------------------i~-~~~~~kF~dlpls~~t~kgLke~~fv~~ 92 (758)
T KOG0343|consen 42 KKKLRQQEEEEIEELKQKYAE----------------------------ID-STTIKKFADLPLSQKTLKGLKEAKFVKM 92 (758)
T ss_pred hhhhhhhhHHHHHHHHHHHHH----------------------------hh-hhhhhhHHhCCCchHHHHhHhhcCCccH
Confidence 667788899999999999877 22 3456679999999999999999999999
Q ss_pred cHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCceE
Q 004567 90 TDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSA 169 (744)
Q Consensus 90 t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~ 169 (744)
|.+|+.+||.+|+|+|||++|.|||||||||++|+|+.||+.+|++.+|.++|||+||||||.|+|+++.++|.+|.+++
T Consensus 93 teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSa 172 (758)
T KOG0343|consen 93 TEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSA 172 (758)
T ss_pred HHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEE
Q 004567 170 GLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 249 (744)
Q Consensus 170 ~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll 249 (744)
|+++| |.++..+..+++.+||+|||||||++||++++.|+++++++|||||||+|++|||..+++.|++++|..+|++|
T Consensus 173 GLiiG-G~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLL 251 (758)
T KOG0343|consen 173 GLIIG-GKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLL 251 (758)
T ss_pred ceeec-CchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeee
Confidence 99999 88899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhHHHHHHHHHHHhCCCcEEEEecchHHHHHHHH
Q 004567 250 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFE 329 (744)
Q Consensus 250 ~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl~~L~~lLk~~~~~k~IVF~~s~~~v~~l~~ 329 (744)
||||++.++.+++++++.+|.||+++......+|.+++|+|++++...|+++||+||++|...++|||++||++|.++|+
T Consensus 252 FSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e 331 (758)
T KOG0343|consen 252 FSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYE 331 (758)
T ss_pred eecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHH
Confidence 99999999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCC
Q 004567 330 AFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYN 408 (744)
Q Consensus 330 ~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g 408 (744)
.|+++.||+++++|||+|+|..|..++..|.. ...||||||+++||||| |.|+||||+|||.++++||||+||++|++
T Consensus 332 ~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDF-paVdwViQ~DCPedv~tYIHRvGRtAR~~ 410 (758)
T KOG0343|consen 332 AFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDF-PAVDWVIQVDCPEDVDTYIHRVGRTARYK 410 (758)
T ss_pred HHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCC-cccceEEEecCchhHHHHHHHhhhhhccc
Confidence 99999999999999999999999999999999 89999999999999999 99999999999999999999999999999
Q ss_pred CCCeEEEEeCcch-HHHHHHHHHcCCCcccccccccccccHHHHHHHHHhcChhHHHHHHHHHHHHHHHhccCCCccccc
Q 004567 409 SGGRSVLFLTPTE-MKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFD 487 (744)
Q Consensus 409 ~~G~~il~l~~~e-~~~l~~l~~~~i~i~~~~~~~~~~~~i~~~l~~~~~~~~~l~~~a~~af~sy~rs~~~~~~~~if~ 487 (744)
..|.++++++|+| ..|+..|+.++||+..+.+++.++.++..+|+++++++|++++.||+||++|++|+|.+.++.+|+
T Consensus 411 ~~G~sll~L~psEeE~~l~~Lq~k~I~i~~i~i~~~k~~~i~~~l~~ll~~~~eLk~~aqka~isY~rsi~~~rdK~~f~ 490 (758)
T KOG0343|consen 411 ERGESLLMLTPSEEEAMLKKLQKKKIPIKEIKIDPEKLTSIRNKLEALLAKDPELKEYAQKAFISYLRSIYLMRDKRVFD 490 (758)
T ss_pred CCCceEEEEcchhHHHHHHHHHHcCCCHHhhccCHHHhhhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhhccchhhc
Confidence 9999999999999 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHhcCCCCCCC-ccccccccCCCCCCCCcCcchhhhhhhhhhhcccCCCCcCCCCCCCCcccccccccccc
Q 004567 488 VTKLSIDEFSASLGLPMTPK-IRFLNQKKGKMVPVKPVLDNAEKEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGK 566 (744)
Q Consensus 488 ~~~l~~~~~a~s~gl~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (744)
+..+++++||.||||+++|+ |+|+....++++ ..+..+.+-+.++ +++ | +++||++|||+|..++
T Consensus 491 ~~~l~~~afa~s~Gl~~~p~~~~~l~~~~k~~~-~~~l~e~~~~~ee-ee~-~-----------~~ed~f~vK~~dvlge 556 (758)
T KOG0343|consen 491 VEKLDIEAFADSLGLPGTPRIVRFLNKKAKKQG-IEQLMEQSVDEEE-EEA-T-----------DDEDFFKVKKHDVLGE 556 (758)
T ss_pred chhccHHHHHHhcCCCCCchhccchhhHHHhcC-hHhhhhhhccchh-hhc-c-----------chhhhhheeccccccc
Confidence 99999999999999999999 999887665555 2211110000000 000 2 3445555555544431
Q ss_pred c----c----c---ccc-------hhhhhhhhhhhhhhhcccCCCCCeeeecCCCCCCCchhhhcccc---ccCCCcChH
Q 004567 567 A----D----L---LED-------VMRATRVKKNKKLKINVHRPLGTRLVFDEECNTVPPLAMLADTK---NANVSLDQD 625 (744)
Q Consensus 567 ~----~----~---~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 625 (744)
- + + ... ..+.+|++.+||+ +++++++|+|++|||||++++ .|+...+. ..|+. ++
T Consensus 557 ~~~l~ee~~~ek~d~~~~svkk~~k~~~tKva~aKKa-~~k~~kvnsK~~FddEGe~~~-~~~~~~e~~~~~~~~d--~~ 632 (758)
T KOG0343|consen 557 PEQLKEEDAAEKEDNDFISVKKKDKKRVTKVALAKKA-LKKNLKVNSKLTFDDEGELAP-EYEQMPETITSKAGDD--DD 632 (758)
T ss_pred hhhhhhhhhhhcccCCCceeccchhhhHHHHHHHHHH-HHHhhccCceeeecCccccch-hhhhchhhhhhhccCc--hh
Confidence 0 0 0 000 0346799999999 999999999999999999888 77766655 33444 77
Q ss_pred HHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC---c-ccc-----cCCCCC-cchhhccccc
Q 004567 626 QKTEYYKKIREELKRADKEDKLLDRQRRREKRIKQKMKRKRGGLGDDDDE---E-DED-----NASDKD-EESMERGRRK 695 (744)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~-----~~~~~~-~~~~~~~~~~ 695 (744)
+...|+.+++++|+++|++||+++|+++++||+++++++|+.++++.+++ + .++ .|++|| +.+|+|+|+|
T Consensus 633 ~~g~~l~k~~a~l~~~D~~DK~~~kek~~ek~r~k~~k~rr~aeea~~~e~e~~e~d~~~~~~~gs~dD~d~s~lPd~dk 712 (758)
T KOG0343|consen 633 TGGINLEKAKAELKEEDKEDKKRFKEKRKEKRREKLEKERRRAEEANEEEAEAEEEDGDFVDWSGSEDDPDISWLPDPDK 712 (758)
T ss_pred hccchHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhccCchhcccCCcccCCcccCCChhh
Confidence 88888999999999999999999999999999999999987665432111 1 111 244444 3378899999
Q ss_pred ccccccCCCCCCchhhhh-cCCCCCCCCCCCCCHHHHHHHHHHhHh
Q 004567 696 KAKIYFDSDSDNDNDERK-QNKDDNGPNIDSISLAEQEALALKLLN 740 (744)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (744)
++++|+++.++.+..... .....+.+. .+.+++|+|++|++|..
T Consensus 713 ~~kk~~~d~de~e~k~~s~~~~~g~k~~-~~~~~eD~e~~~~k~~~ 757 (758)
T KOG0343|consen 713 VRKKKESDSDENEGKIQSALAADGIKEV-SNSSVEDVEPLALKLKK 757 (758)
T ss_pred hhhccccCchhhcccccccccccccccc-CCcchhhcchhhHHhhc
Confidence 999998877665543211 223445555 78999999999999865
No 2
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.6e-85 Score=689.50 Aligned_cols=445 Identities=38% Similarity=0.607 Sum_probs=412.9
Q ss_pred CCCCCC--CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCC-CceEE
Q 004567 66 TRFDQL--PISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPED-GVGSI 142 (744)
Q Consensus 66 ~~F~~l--~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~-g~~aL 142 (744)
..|+++ ||+++++.+|..+||..|||+|..+||+++.++||++.|+||||||+||++|+++.++++.-.... ..++|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 346666 477999999999999999999999999999999999999999999999999999999876433222 47899
Q ss_pred EEcCChHHHHHHHHHHHHhhcc-CCceEEEEEcCccChHHHHHhc--CCCcEEEEChHHHHHHHhc-CCCCCCCCceEEE
Q 004567 143 IISPTRELADQLFDVLKAVGKH-HNFSAGLLIGGRRDVDMEKEHV--NELNILVCTPGRLLQHMDE-TPNFDCSQLQILI 218 (744)
Q Consensus 143 Il~PtreLa~Qi~~~l~~~~~~-~~~~~~~l~Gg~~~~~~e~~~~--~~~~IlV~TPgrLl~~l~~-~~~~~~~~l~~lV 218 (744)
||+||||||.||.+++..|..+ .++++.+++| |..+......+ .+++|+|||||||.+.+.+ ...+++.+++++|
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vG-G~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LV 162 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVG-GRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILV 162 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEec-CccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEE
Confidence 9999999999999999999877 6789999999 56666655554 5799999999999999987 4456778999999
Q ss_pred EcCchhhhccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhH
Q 004567 219 LDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK 298 (744)
Q Consensus 219 lDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~k 298 (744)
|||||++++|||...++.|++.+|+++++-|||||++..+.++++.+++||..+++.......+|..+..+|++|+...|
T Consensus 163 LDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK 242 (567)
T KOG0345|consen 163 LDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEK 242 (567)
T ss_pred ecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccc
Q 004567 299 LDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLD 377 (744)
Q Consensus 299 l~~L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlD 377 (744)
+..|+.+|..+...++|||++||..|++.+..|..+.+..+++.+||.|.+..|..++..|.+ ...+|+|||+++||||
T Consensus 243 ~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlD 322 (567)
T KOG0345|consen 243 LSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLD 322 (567)
T ss_pred HHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCC
Confidence 999999999999999999999999999999999998889999999999999999999999999 8999999999999999
Q ss_pred cCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHHcC-CCcccccccccccccHHHHHHHHH
Q 004567 378 FNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAK-IPIHFTKANTKRLQPVSGLLAALL 456 (744)
Q Consensus 378 i~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~~~-i~i~~~~~~~~~~~~i~~~l~~~~ 456 (744)
| |+|+||||||+|.+++.|+||+|||||+|+.|.+++|+.|.|..|++.|.-++ ++++.+....+... +.+.+.+++
T Consensus 323 i-p~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~e~~~~~-~~~~ir~~~ 400 (567)
T KOG0345|consen 323 I-PGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDTEKASLS-VYQDIRSII 400 (567)
T ss_pred C-CCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhcccccchh-HHHHHHHHh
Confidence 9 99999999999999999999999999999999999999999999999999985 66666665554443 788899999
Q ss_pred hcChhHHHHHHHHHHHHHHHhccCCCcccccccCCCHHHHHHhcCCCCCCCcccccc
Q 004567 457 VKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQ 513 (744)
Q Consensus 457 ~~~~~l~~~a~~af~sy~rs~~~~~~~~if~~~~l~~~~~a~s~gl~~~p~~~~~~~ 513 (744)
.+|.++.+.+.+||+||+|+|..|.+.+||.+++|+++.+|.+|||...|+|+.+++
T Consensus 401 ~~DR~~~dkG~kAFVS~VraY~~H~cs~Ifr~kdLd~~~lA~~YgLl~lP~M~Elk~ 457 (567)
T KOG0345|consen 401 SKDRAVLDKGLKAFVSHVRAYKKHHCSYIFRLKDLDLGKLATLYGLLRLPKMPELKQ 457 (567)
T ss_pred cccHHHHhhhHHHHHHHHHHHhhcceeEEEeecCCcHHHHHHHHHHHhCCCcHHHhh
Confidence 999999999999999999999999999999999999999999999999999999875
No 3
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2.9e-85 Score=697.15 Aligned_cols=446 Identities=39% Similarity=0.697 Sum_probs=425.7
Q ss_pred CcCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceE
Q 004567 62 YVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGS 141 (744)
Q Consensus 62 ~~~~~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~a 141 (744)
+.....|+.++||+.++++++.+||.+||++|..+||.++.|+|+++.|.||||||+|||+|+++.++..++.+..+.++
T Consensus 78 ~~~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~v 157 (543)
T KOG0342|consen 78 ITTTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGV 157 (543)
T ss_pred hhhhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeE
Confidence 34466799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCChHHHHHHHHHHHHhhccC-CceEEEEEcCccChHHHHHh-cCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEE
Q 004567 142 IIISPTRELADQLFDVLKAVGKHH-NFSAGLLIGGRRDVDMEKEH-VNELNILVCTPGRLLQHMDETPNFDCSQLQILIL 219 (744)
Q Consensus 142 LIl~PtreLa~Qi~~~l~~~~~~~-~~~~~~l~Gg~~~~~~e~~~-~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVl 219 (744)
||||||||||.|++.+++.+..+| ++.++.++| |++...+... ..+++|+|+|||||++|+.+.+.|-+.+++++|+
T Consensus 158 lIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viG-G~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvl 236 (543)
T KOG0342|consen 158 LIICPTRELAMQIFAEAKELLKYHESITVGIVIG-GNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVL 236 (543)
T ss_pred EEecccHHHHHHHHHHHHHHHhhCCCcceEEEeC-CccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEe
Confidence 999999999999999999999998 899999999 5555544444 4589999999999999999999998999999999
Q ss_pred cCchhhhccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcC-CCccccccccccccCccccceeEEEcChhhH
Q 004567 220 DEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLK-DPQYLSVHEESVTATPNRLQQTAMIVPLEQK 298 (744)
Q Consensus 220 DEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~-~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~k 298 (744)
||||+++++||...+..|+..+|+.+|+++||||++..|.++++..+. +|.++.+.......+...+.|.|++++...+
T Consensus 237 DEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~ 316 (543)
T KOG0342|consen 237 DEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSR 316 (543)
T ss_pred ecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccch
Confidence 999999999999999999999999999999999999999999998886 5999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC-CcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEcccccccc
Q 004567 299 LDMLWSFIKAHLN-SKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGL 376 (744)
Q Consensus 299 l~~L~~lLk~~~~-~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGl 376 (744)
+..|+.+|+.+.. .++||||+||..+.+++++|+.+ .++|..+||+++|..|..++..|++ +..|||||||++||+
T Consensus 317 f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~--dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGl 394 (543)
T KOG0342|consen 317 FSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYI--DLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGL 394 (543)
T ss_pred HHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhc--CCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccC
Confidence 9999999999987 99999999999999999999976 9999999999999999999999999 999999999999999
Q ss_pred ccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHHcCCCcccccccccccccHHHHHHHHH
Q 004567 377 DFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALL 456 (744)
Q Consensus 377 Di~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~~~i~i~~~~~~~~~~~~i~~~l~~~~ 456 (744)
|| |+|+||||||+|.++.+||||+|||||.|..|.+++|+.|.|..|+++|+ ++|+++.++.+.+..+++.+++.++
T Consensus 395 D~-P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK--~lpl~~~e~~~~~~~~v~~~~~~li 471 (543)
T KOG0342|consen 395 DI-PDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK--KLPLEEFEFPPLKPEDVQSQLEKLI 471 (543)
T ss_pred CC-CCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh--hCCCcccCCCCCCHHHHHHHHHHHH
Confidence 99 99999999999999999999999999999999999999999999999998 7999999999999999999999999
Q ss_pred hcChhHHHHHHHHHHHHHHHhccCCCcccccccCCCHHHHHHhcCCCCCCCcccccc
Q 004567 457 VKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQ 513 (744)
Q Consensus 457 ~~~~~l~~~a~~af~sy~rs~~~~~~~~if~~~~l~~~~~a~s~gl~~~p~~~~~~~ 513 (744)
.++..+++.|..||.+|++.|..++.+.+|++..+++.++|.|||++.+|.+...-.
T Consensus 472 ~~~y~~~~aak~ay~syl~~y~s~slk~~~~~~~l~La~~~~s~gf~~pp~v~~~i~ 528 (543)
T KOG0342|consen 472 SKNYSLKEAAKEAYKSYLGAYNSHSLKDIFNVNLLELAAVAKSFGFSVPPAVDLKID 528 (543)
T ss_pred HHHhhHHHHHHHHHHhhhhhccchhhhcccccchhhHHHHHHHcCCCCCccceeecc
Confidence 999999999999999999999999999999999999999999999999999887543
No 4
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-78 Score=647.20 Aligned_cols=444 Identities=35% Similarity=0.572 Sum_probs=392.1
Q ss_pred cCCCCCCCCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhc--cCCCCCCc
Q 004567 63 VGSTRFDQLPISKKTKSGLKD-AGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKE--RWGPEDGV 139 (744)
Q Consensus 63 ~~~~~F~~l~ls~~~~~~L~~-~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~--~~~~~~g~ 139 (744)
.....|..|+|++.+...|+. ++|..||.+|.+|||.++.|+|++|.++||||||++|++|+++.|... ++.+.+|.
T Consensus 133 fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~ 212 (708)
T KOG0348|consen 133 FTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGP 212 (708)
T ss_pred cccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCc
Confidence 456789999999999999976 899999999999999999999999999999999999999999999763 46678999
Q ss_pred eEEEEcCChHHHHHHHHHHHHhhcc-CCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEE
Q 004567 140 GSIIISPTRELADQLFDVLKAVGKH-HNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILI 218 (744)
Q Consensus 140 ~aLIl~PtreLa~Qi~~~l~~~~~~-~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lV 218 (744)
.+|||+||||||.|+|++++++... +.+..|.++||.+...+..+...+++|+|+|||||++|+.++..|.++++++||
T Consensus 213 ~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlV 292 (708)
T KOG0348|consen 213 YALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLV 292 (708)
T ss_pred eEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEE
Confidence 9999999999999999999998764 566778889955544444445568999999999999999999999999999999
Q ss_pred EcCchhhhccchHHHHHHHHHhC-------------CCCCcEEEEeeccChhHHHHHHHhcCCCccccccc---------
Q 004567 219 LDEADRILDVGFKKALNAIVSQL-------------PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHE--------- 276 (744)
Q Consensus 219 lDEAh~lld~gf~~~l~~Il~~l-------------p~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~--------- 276 (744)
|||||+|+++||...+..|++.+ |...|.+|+|||++..|..++...+.||.+|..+.
T Consensus 293 lDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~ 372 (708)
T KOG0348|consen 293 LDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKD 372 (708)
T ss_pred ecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcch
Confidence 99999999999999999999876 33478999999999999999999999999998211
Q ss_pred ------c--------ccccCccccceeEEEcChhhHHHHHHHHHHHhC----CCcEEEEecchHHHHHHHHHHHhhC---
Q 004567 277 ------E--------SVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHL----NSKILVFLTSCKQVKYVFEAFKKLR--- 335 (744)
Q Consensus 277 ------~--------~~~~~~~~l~q~~~~~~~~~kl~~L~~lLk~~~----~~k~IVF~~s~~~v~~l~~~L~~l~--- 335 (744)
. +....|..+.|.|+++|..-++-.|..+|..+. ..++|||+++++.|+|-|.+|....
T Consensus 373 ~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~ 452 (708)
T KOG0348|consen 373 KAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSH 452 (708)
T ss_pred hhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcc
Confidence 0 125678999999999999999998888887643 6799999999999999999997642
Q ss_pred -----------------CCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCcEEEEcCCCCCHhHH
Q 004567 336 -----------------PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASY 397 (744)
Q Consensus 336 -----------------~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~y 397 (744)
-+..++.|||+|.|++|..+++.|.. ...||+||||++||||+ |.|+||||||+|.++++|
T Consensus 453 ~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDl-P~V~~vVQYd~P~s~ady 531 (708)
T KOG0348|consen 453 LEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDL-PHVGLVVQYDPPFSTADY 531 (708)
T ss_pred cccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCC-CCcCeEEEeCCCCCHHHH
Confidence 24558999999999999999999999 88899999999999999 999999999999999999
Q ss_pred HHHhhccCcCCCCCeEEEEeCcchHHHHHHHHHcCCCccccccc------------------ccccccHHHHHHHHHhcC
Q 004567 398 IHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKIPIHFTKAN------------------TKRLQPVSGLLAALLVKY 459 (744)
Q Consensus 398 iQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~~~i~i~~~~~~------------------~~~~~~i~~~l~~~~~~~ 459 (744)
+||||||+|+|..|.+++|+.|.|.+|++.|+.+.+.+.+.... ......++..++.++..+
T Consensus 532 lHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~~~l~q~~~~~~l~~~~~~~~k~~~~e~~~~at~~q~~~e~~~~~~ 611 (708)
T KOG0348|consen 532 LHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHIMLLQFDMEILLPAFKPRKDKAKTKEWQERATTLQLNLERLVVGD 611 (708)
T ss_pred HHHhhhhhhccCCCceEEEecccHHHHHHHHHhhcchhhccchhhhhhhcCcccccccchhhhhhHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999886654443221 111234667788999999
Q ss_pred hhHHHHHHHHHHHHHHHhccC--CCcccccccCCCHHHHHHhcCCCCCCC
Q 004567 460 PDMQHRAQKAFITYLRSVHIQ--KDKEVFDVTKLSIDEFSASLGLPMTPK 507 (744)
Q Consensus 460 ~~l~~~a~~af~sy~rs~~~~--~~~~if~~~~l~~~~~a~s~gl~~~p~ 507 (744)
+.++.+|.+||+||++.|..+ ..+.||++..|+++++|+||||.++|.
T Consensus 612 ~~~~~~a~kaf~S~vr~Yath~~elk~iFnvr~lHlGH~AKSFaLReaP~ 661 (708)
T KOG0348|consen 612 EAMKNLAKKAFVSWVRAYATHPSELKSIFNVRFLHLGHVAKSFALREAPG 661 (708)
T ss_pred HHHHHHHHHHHHHHHHHHhhChhhhccceehhhhhhhHHHHhhHhhhcch
Confidence 999999999999999999776 578999999999999999999999994
No 5
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-71 Score=577.37 Aligned_cols=372 Identities=36% Similarity=0.602 Sum_probs=344.4
Q ss_pred cCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEE
Q 004567 63 VGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSI 142 (744)
Q Consensus 63 ~~~~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aL 142 (744)
....+|.+|++++.+++++...||..||+||+++||.++.|+|||+.|.||||||.+|++|+++.|+.+ .....++
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~----p~~~~~l 133 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQE----PKLFFAL 133 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcC----CCCceEE
Confidence 456679999999999999999999999999999999999999999999999999999999999999876 3458899
Q ss_pred EEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCc
Q 004567 143 IISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEA 222 (744)
Q Consensus 143 Il~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEA 222 (744)
|++||||||.||.+++..++...++.+.++.||..-..........++|+|||||+|.+|+.++..|++..++++|+|||
T Consensus 134 VLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEA 213 (476)
T KOG0330|consen 134 VLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEA 213 (476)
T ss_pred EecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchH
Confidence 99999999999999999999999999999999544444455556789999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhHHHHH
Q 004567 223 DRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDML 302 (744)
Q Consensus 223 h~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl~~L 302 (744)
|+++++.|...+..|+..+|..+|++|||||+|..+..+.+.++.+|..+.+.. .+.+-..+.|+|..++...|...|
T Consensus 214 DrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~--ky~tv~~lkQ~ylfv~~k~K~~yL 291 (476)
T KOG0330|consen 214 DRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSS--KYQTVDHLKQTYLFVPGKDKDTYL 291 (476)
T ss_pred HhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccc--hhcchHHhhhheEeccccccchhH
Confidence 999999999999999999999999999999999999999999999998887643 456778899999999999999999
Q ss_pred HHHHHHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCC
Q 004567 303 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKA 381 (744)
Q Consensus 303 ~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~ 381 (744)
..+++...+..+||||+||..+++++-+|+.+ |+.+..|||.|++..|...++.|+. .+.||||||+++||||+ |.
T Consensus 292 V~ll~e~~g~s~iVF~~t~~tt~~la~~L~~l--g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDi-p~ 368 (476)
T KOG0330|consen 292 VYLLNELAGNSVIVFCNTCNTTRFLALLLRNL--GFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDI-PH 368 (476)
T ss_pred HHHHHhhcCCcEEEEEeccchHHHHHHHHHhc--CcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCC-CC
Confidence 99999999999999999999999999999987 9999999999999999999999999 89999999999999999 99
Q ss_pred CcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHHc-CCCccccccccc
Q 004567 382 VDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTKANTK 443 (744)
Q Consensus 382 V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~~-~i~i~~~~~~~~ 443 (744)
|++|||||+|.+..+||||+||+||+|+.|.++.|++..+.+.+.+|+.. +-.....+++.+
T Consensus 369 Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~~ 431 (476)
T KOG0330|consen 369 VDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDKN 431 (476)
T ss_pred ceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcchH
Confidence 99999999999999999999999999999999999999999999888776 444444444433
No 6
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-70 Score=581.30 Aligned_cols=395 Identities=34% Similarity=0.533 Sum_probs=346.9
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEE
Q 004567 65 STRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIII 144 (744)
Q Consensus 65 ~~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl 144 (744)
..+|.+++||.++++++..+||..|||||..+||.++-|+|++.+|.||||||.||++|+|++|+..... ..-.++|||
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~-~~~TRVLVL 258 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK-VAATRVLVL 258 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc-CcceeEEEE
Confidence 4579999999999999999999999999999999999999999999999999999999999998654322 345789999
Q ss_pred cCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchh
Q 004567 145 SPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADR 224 (744)
Q Consensus 145 ~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~ 224 (744)
|||||||.|++.+.++++.+..+.+++.+||-.-..++......|+|+|+|||||.+||.+.+.|+++++.++|+|||||
T Consensus 259 ~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADR 338 (691)
T KOG0338|consen 259 VPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADR 338 (691)
T ss_pred eccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHH
Confidence 99999999999999999999999999999944444455555568999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcCh---hhHHHH
Q 004567 225 ILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPL---EQKLDM 301 (744)
Q Consensus 225 lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~---~~kl~~ 301 (744)
|++.||...++.|+..+|+++|++|||||++..+.+|+.++|+.|..+.+.+.. .+...+.|.|+.+.. ..+-..
T Consensus 339 MLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~--~~a~~LtQEFiRIR~~re~dRea~ 416 (691)
T KOG0338|consen 339 MLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNK--DTAPKLTQEFIRIRPKREGDREAM 416 (691)
T ss_pred HHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCcc--ccchhhhHHHheeccccccccHHH
Confidence 999999999999999999999999999999999999999999999999987765 455667777776553 235677
Q ss_pred HHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCC
Q 004567 302 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNK 380 (744)
Q Consensus 302 L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p 380 (744)
|..++.......+|||+.|.++|..+.-+|.-+ |+.+.-+||.++|.+|...++.|++ .+.||||||+++||||| +
T Consensus 417 l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLl--gl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI-~ 493 (691)
T KOG0338|consen 417 LASLITRTFQDRTIVFVRTKKQAHRLRILLGLL--GLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDI-E 493 (691)
T ss_pred HHHHHHHhcccceEEEEehHHHHHHHHHHHHHh--hchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCc-c
Confidence 888888888999999999999999999888876 9999999999999999999999999 99999999999999999 9
Q ss_pred CCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHHc----C-------CCcccccccccccccHH
Q 004567 381 AVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA----K-------IPIHFTKANTKRLQPVS 449 (744)
Q Consensus 381 ~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~~----~-------i~i~~~~~~~~~~~~i~ 449 (744)
+|..||||++|.+...|+||+|||+|+|+.|.++.|+..++..+++.+... + ||.+.+.-....+..+.
T Consensus 494 gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~~~a~~klk~R~i~~~~Iek~~~~ieemE 573 (691)
T KOG0338|consen 494 GVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSSTKAGSKLKNRNIPPEVIEKFRKKIEEME 573 (691)
T ss_pred ceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhhhhcccchhhcCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999888665 2 33333333334444555
Q ss_pred HHHHHHHhcChhHHHH
Q 004567 450 GLLAALLVKYPDMQHR 465 (744)
Q Consensus 450 ~~l~~~~~~~~~l~~~ 465 (744)
..++.++......+++
T Consensus 574 ~~iq~vl~eE~~ekel 589 (691)
T KOG0338|consen 574 DTIQAVLDEEREEKEL 589 (691)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666555444433
No 7
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-67 Score=579.77 Aligned_cols=363 Identities=33% Similarity=0.542 Sum_probs=333.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHh--ccCCCCCCceE
Q 004567 64 GSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYK--ERWGPEDGVGS 141 (744)
Q Consensus 64 ~~~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~--~~~~~~~g~~a 141 (744)
....|+.++|++.+...|+..||..|||||.++||.+++|+|+++.|.|||||||+|++|++.++.. ......+++.+
T Consensus 89 ~~~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~v 168 (519)
T KOG0331|consen 89 SSAAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIV 168 (519)
T ss_pred cchhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeE
Confidence 3447999999999999999999999999999999999999999999999999999999999999986 33455678999
Q ss_pred EEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcC
Q 004567 142 IIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDE 221 (744)
Q Consensus 142 LIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDE 221 (744)
|||+||||||.|+..++..++....+.+.|++||...-.+.....++.+|+|+|||||++++... .++++++.++||||
T Consensus 169 LVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g-~~~l~~v~ylVLDE 247 (519)
T KOG0331|consen 169 LVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEG-SLNLSRVTYLVLDE 247 (519)
T ss_pred EEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcC-CccccceeEEEecc
Confidence 99999999999999999999999999999999955555555666678999999999999999987 78899999999999
Q ss_pred chhhhccchHHHHHHHHHhC-CCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhHHH
Q 004567 222 ADRILDVGFKKALNAIVSQL-PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLD 300 (744)
Q Consensus 222 Ah~lld~gf~~~l~~Il~~l-p~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl~ 300 (744)
||+|++|||..++..|+..+ ++.+|++++|||+|..+..++..++.+|..+.+..........++.|....|+...|..
T Consensus 248 ADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~ 327 (519)
T KOG0331|consen 248 ADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLR 327 (519)
T ss_pred HHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHH
Confidence 99999999999999999999 55669999999999999999999999999998886655566788899999999999999
Q ss_pred HHHHHHHHhC---CCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEcccccccc
Q 004567 301 MLWSFIKAHL---NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGL 376 (744)
Q Consensus 301 ~L~~lLk~~~---~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGl 376 (744)
.|..+|.... .+|+||||+|++.|+.+...|+.. ++++.+|||+.+|.+|..+++.|++ +..||||||+++|||
T Consensus 328 ~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~--~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGL 405 (519)
T KOG0331|consen 328 KLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRK--GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGL 405 (519)
T ss_pred HHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhc--CcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccC
Confidence 9998888764 679999999999999999999885 6899999999999999999999999 999999999999999
Q ss_pred ccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHH
Q 004567 377 DFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLRE 430 (744)
Q Consensus 377 Di~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~ 430 (744)
|| |+|++|||||+|.++++|+||+|||||+|+.|.++.|++..+......+.+
T Consensus 406 Di-~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~ 458 (519)
T KOG0331|consen 406 DV-PDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIK 458 (519)
T ss_pred CC-ccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHH
Confidence 99 999999999999999999999999999999999999999998866655543
No 8
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-66 Score=589.69 Aligned_cols=359 Identities=37% Similarity=0.605 Sum_probs=331.6
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEc
Q 004567 66 TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIIS 145 (744)
Q Consensus 66 ~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~ 145 (744)
..|+++++++.++++|.++||..|||||..+||.++.|+|++++|+||||||+||++|+++.+... .......+||++
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~--~~~~~~~aLil~ 106 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKS--VERKYVSALILA 106 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcc--cccCCCceEEEC
Confidence 569999999999999999999999999999999999999999999999999999999999997642 111112299999
Q ss_pred CChHHHHHHHHHHHHhhccC-CceEEEEEcCccChHHHHHhcC-CCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCch
Q 004567 146 PTRELADQLFDVLKAVGKHH-NFSAGLLIGGRRDVDMEKEHVN-ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEAD 223 (744)
Q Consensus 146 PtreLa~Qi~~~l~~~~~~~-~~~~~~l~Gg~~~~~~e~~~~~-~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh 223 (744)
||||||.|+++++..++.+. ++.+.+++| |.+...+...+. +++|||||||||++|+... .++++.+.++|+||||
T Consensus 107 PTRELA~Qi~~~~~~~~~~~~~~~~~~i~G-G~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~-~l~l~~v~~lVlDEAD 184 (513)
T COG0513 107 PTRELAVQIAEELRKLGKNLGGLRVAVVYG-GVSIRKQIEALKRGVDIVVATPGRLLDLIKRG-KLDLSGVETLVLDEAD 184 (513)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCccEEEEEC-CCCHHHHHHHHhcCCCEEEECccHHHHHHHcC-CcchhhcCEEEeccHh
Confidence 99999999999999999988 799999999 555555545554 6999999999999999988 8899999999999999
Q ss_pred hhhccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhh-HHHHH
Q 004567 224 RILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ-KLDML 302 (744)
Q Consensus 224 ~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~-kl~~L 302 (744)
+|+++||...+..|+..+|..+|+++||||++..+..+++.++.+|..+.+.......+...+.|.|+.+.... |+..|
T Consensus 185 rmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L 264 (513)
T COG0513 185 RMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELL 264 (513)
T ss_pred hhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888886666568899999999999876 99999
Q ss_pred HHHHHHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCC
Q 004567 303 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKA 381 (744)
Q Consensus 303 ~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~ 381 (744)
+.++......++||||+|+..|+.++..|... |+.+..|||+|+|..|..++..|++ ...||||||+++||||| |+
T Consensus 265 ~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~--g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi-~~ 341 (513)
T COG0513 265 LKLLKDEDEGRVIVFVRTKRLVEELAESLRKR--GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDI-PD 341 (513)
T ss_pred HHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHC--CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCc-cc
Confidence 99999988889999999999999999999986 8999999999999999999999999 99999999999999999 99
Q ss_pred CcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcc-hHHHHHHHHHc
Q 004567 382 VDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT-EMKMLEKLREA 431 (744)
Q Consensus 382 V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~-e~~~l~~l~~~ 431 (744)
|++|||||+|.+++.|+||+|||||+|+.|.++.|+++. |..++..++..
T Consensus 342 v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~ 392 (513)
T COG0513 342 VSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKR 392 (513)
T ss_pred cceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999986 77888888775
No 9
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.8e-65 Score=520.74 Aligned_cols=371 Identities=33% Similarity=0.509 Sum_probs=337.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEE
Q 004567 64 GSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSII 143 (744)
Q Consensus 64 ~~~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLI 143 (744)
...+|+.|||++|+.+.|+.+|+..|||+|..|||.+|.|+|+|++|.||||||++|.+|++++|..+ ..|..++|
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed----P~giFalv 80 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED----PYGIFALV 80 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC----CCcceEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999776 45788999
Q ss_pred EcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCC---CCCCCCceEEEEc
Q 004567 144 ISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETP---NFDCSQLQILILD 220 (744)
Q Consensus 144 l~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~---~~~~~~l~~lVlD 220 (744)
++||||||.|+.+.|..+++..++.+..++||..-+.+......+++|+|+||||+.+|+..+. .+.+.+++++|+|
T Consensus 81 lTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlD 160 (442)
T KOG0340|consen 81 LTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLD 160 (442)
T ss_pred ecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEec
Confidence 9999999999999999999999999999999655566666666799999999999999998873 4557899999999
Q ss_pred CchhhhccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhHHH
Q 004567 221 EADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLD 300 (744)
Q Consensus 221 EAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl~ 300 (744)
|||++++.+|...+..+.+.+|..+|+++||||+++.+..+.......+............++..+.|.|+.++...+-.
T Consensus 161 EADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkda 240 (442)
T KOG0340|consen 161 EADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDA 240 (442)
T ss_pred chhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHH
Confidence 99999999999999999999999999999999999999888877766654444444444578899999999999999999
Q ss_pred HHHHHHHHhC---CCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEcccccccc
Q 004567 301 MLWSFIKAHL---NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGL 376 (744)
Q Consensus 301 ~L~~lLk~~~---~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGl 376 (744)
.|+.+|+... +..++||++++.+|+.++-.|..+ ++.+.++||.|+|.+|...+.+|+. ...||||||+++|||
T Consensus 241 YLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l--e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGL 318 (442)
T KOG0340|consen 241 YLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL--EVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGL 318 (442)
T ss_pred HHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhh--ceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCC
Confidence 9999997654 578999999999999999999997 8999999999999999999999999 899999999999999
Q ss_pred ccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHHc-CCCccccccc
Q 004567 377 DFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTKAN 441 (744)
Q Consensus 377 Di~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~~-~i~i~~~~~~ 441 (744)
|| |.|+.|||||.|.++.+||||+|||+|+|+.|.++.|+++.+.+.+..+++. +-.+.+.+..
T Consensus 319 DI-P~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~ 383 (442)
T KOG0340|consen 319 DI-PTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKV 383 (442)
T ss_pred CC-CceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccccccccc
Confidence 99 9999999999999999999999999999999999999999999999999887 5555555443
No 10
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-62 Score=489.12 Aligned_cols=369 Identities=28% Similarity=0.480 Sum_probs=338.6
Q ss_pred CcCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceE
Q 004567 62 YVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGS 141 (744)
Q Consensus 62 ~~~~~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~a 141 (744)
.....+|++++|++.+++++...||..|+.||+.|||.+++|+||+++|..|+|||.+|.+.+++.+--. ....++
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~----~r~tQ~ 98 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS----VRETQA 98 (400)
T ss_pred cccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc----cceeeE
Confidence 4456789999999999999999999999999999999999999999999999999999999999886332 235789
Q ss_pred EEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhc-CCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEc
Q 004567 142 IIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV-NELNILVCTPGRLLQHMDETPNFDCSQLQILILD 220 (744)
Q Consensus 142 LIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~-~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlD 220 (744)
||++||||||.|+..++..++.+.++.+..++| |+++......+ .+.+++.+|||++++++... .+....++++|||
T Consensus 99 lilsPTRELa~Qi~~vi~alg~~mnvq~hacig-g~n~gedikkld~G~hvVsGtPGrv~dmikr~-~L~tr~vkmlVLD 176 (400)
T KOG0328|consen 99 LILSPTRELAVQIQKVILALGDYMNVQCHACIG-GKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRR-SLRTRAVKMLVLD 176 (400)
T ss_pred EEecChHHHHHHHHHHHHHhcccccceEEEEec-CCccchhhhhhcccceEeeCCCchHHHHHHhc-cccccceeEEEec
Confidence 999999999999999999999999999999999 77766665555 58999999999999999877 6788999999999
Q ss_pred CchhhhccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhh-HH
Q 004567 221 EADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ-KL 299 (744)
Q Consensus 221 EAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~-kl 299 (744)
|||.|++.||..++-.|+.++|+..|++++|||+|..+......++.+|..+.+.... .+...+.|+|+.+..++ |+
T Consensus 177 EaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrde--ltlEgIKqf~v~ve~EewKf 254 (400)
T KOG0328|consen 177 EADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDE--LTLEGIKQFFVAVEKEEWKF 254 (400)
T ss_pred cHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCC--CchhhhhhheeeechhhhhH
Confidence 9999999999999999999999999999999999999999999999999998887665 45677899999988766 99
Q ss_pred HHHHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEcccccccccc
Q 004567 300 DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDF 378 (744)
Q Consensus 300 ~~L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi 378 (744)
++|.++.....-..++|||||+..+.++.+.++.. ++.+.++||+|.+++|..++..|+. +.+||++||+.+||+|+
T Consensus 255 dtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~--nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv 332 (400)
T KOG0328|consen 255 DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA--NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDV 332 (400)
T ss_pred hHHHHHhhhhehheEEEEecccchhhHHHHHHHhh--CceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCc
Confidence 99999999888899999999999999999999985 8899999999999999999999999 99999999999999999
Q ss_pred CCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHHc-CCCccccccc
Q 004567 379 NKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTKAN 441 (744)
Q Consensus 379 ~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~~-~i~i~~~~~~ 441 (744)
|.|++|||||.|.+.+.|+||+||.||+|+.|.++.|+...+...+..+++. +..+.++.++
T Consensus 333 -~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~n 395 (400)
T KOG0328|consen 333 -QQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMN 395 (400)
T ss_pred -ceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccch
Confidence 9999999999999999999999999999999999999999999999988886 5555555443
No 11
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=5e-62 Score=520.66 Aligned_cols=362 Identities=30% Similarity=0.493 Sum_probs=330.9
Q ss_pred CcCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhcc-----CCCC
Q 004567 62 YVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKER-----WGPE 136 (744)
Q Consensus 62 ~~~~~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~-----~~~~ 136 (744)
+.+..+|++.|++..+++.+...||..|||||+.+||..++.+|+|+.|.||||||++|++|++..+..-. ....
T Consensus 241 pnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~ 320 (673)
T KOG0333|consen 241 PNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNI 320 (673)
T ss_pred CccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcc
Confidence 45678899999999999999999999999999999999999999999999999999999999998775432 1235
Q ss_pred CCceEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHH-HhcCCCcEEEEChHHHHHHHhcCCCCCCCCce
Q 004567 137 DGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEK-EHVNELNILVCTPGRLLQHMDETPNFDCSQLQ 215 (744)
Q Consensus 137 ~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~-~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~ 215 (744)
.|+.++|++|||+||+||++...+|+...++.+..++| |....... ....+|.|+|+|||+|++.|.+. .+-++.+.
T Consensus 321 ~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvig-g~s~EEq~fqls~gceiviatPgrLid~Lenr-~lvl~qct 398 (673)
T KOG0333|consen 321 EGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIG-GLSFEEQGFQLSMGCEIVIATPGRLIDSLENR-YLVLNQCT 398 (673)
T ss_pred cCceeeeechHHHHHHHHHHHHHHhcccccceEEEEec-ccchhhhhhhhhccceeeecCchHHHHHHHHH-HHHhccCc
Confidence 68999999999999999999999999999999999999 55554443 44468999999999999999876 67789999
Q ss_pred EEEEcCchhhhccchHHHHHHHHHhCCC-------------------------CCcEEEEeeccChhHHHHHHHhcCCCc
Q 004567 216 ILILDEADRILDVGFKKALNAIVSQLPK-------------------------HRQTFLFSATQTKSVQDLARLSLKDPQ 270 (744)
Q Consensus 216 ~lVlDEAh~lld~gf~~~l~~Il~~lp~-------------------------~~q~ll~SAT~~~~v~~la~~~l~~p~ 270 (744)
+||+||||+|+||||.+.+..|+.++|. .+|+++||||+|+.+..+++.+|.+|.
T Consensus 399 yvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv 478 (673)
T KOG0333|consen 399 YVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPV 478 (673)
T ss_pred eEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCe
Confidence 9999999999999999999999999974 179999999999999999999999999
Q ss_pred cccccccccccCccccceeEEEcChhhHHHHHHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHH
Q 004567 271 YLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQD 350 (744)
Q Consensus 271 ~i~v~~~~~~~~~~~l~q~~~~~~~~~kl~~L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~ 350 (744)
++.+.... .+...++|.+..+....|...|..+|......++|||+|+.+.|+.+++.|.++ |+.++.|||+-+|+
T Consensus 479 ~vtig~~g--k~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~--g~~~~tlHg~k~qe 554 (673)
T KOG0333|consen 479 VVTIGSAG--KPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKA--GYKVTTLHGGKSQE 554 (673)
T ss_pred EEEeccCC--CCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhc--cceEEEeeCCccHH
Confidence 99886654 566789999999999999999999999998999999999999999999999997 89999999999999
Q ss_pred HHHHHHHHHhc-cCCeEEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHH
Q 004567 351 RRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLR 429 (744)
Q Consensus 351 ~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~ 429 (744)
+|..++..|+. ...||||||+++||||| |+|.+|||||++.++.+|+||||||||+|+.|.++.|+++.+...+..|.
T Consensus 555 QRe~aL~~fr~~t~dIlVaTDvAgRGIDI-pnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLk 633 (673)
T KOG0333|consen 555 QRENALADFREGTGDILVATDVAGRGIDI-PNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLK 633 (673)
T ss_pred HHHHHHHHHHhcCCCEEEEecccccCCCC-CccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHH
Confidence 99999999999 89999999999999999 99999999999999999999999999999999999999999865444443
Q ss_pred H
Q 004567 430 E 430 (744)
Q Consensus 430 ~ 430 (744)
+
T Consensus 634 q 634 (673)
T KOG0333|consen 634 Q 634 (673)
T ss_pred H
Confidence 3
No 12
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.8e-60 Score=535.07 Aligned_cols=360 Identities=29% Similarity=0.508 Sum_probs=322.8
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCC---CCCCceE
Q 004567 65 STRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWG---PEDGVGS 141 (744)
Q Consensus 65 ~~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~---~~~g~~a 141 (744)
..+|++++|++.++++|..+||..|||+|.+|||.++.|+|++++||||||||++|++|+++.+...... ...+.++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 3579999999999999999999999999999999999999999999999999999999999998765432 1346789
Q ss_pred EEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHH-hcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEc
Q 004567 142 IIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKE-HVNELNILVCTPGRLLQHMDETPNFDCSQLQILILD 220 (744)
Q Consensus 142 LIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~-~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlD 220 (744)
|||+||++||.|+++.+..++...++.++.++|| ........ ...+++|+||||++|++++... .+.+.++++||||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg-~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~-~~~l~~v~~lViD 164 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGG-DGYDKQLKVLESGVDILIGTTGRLIDYAKQN-HINLGAIQVVVLD 164 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECC-CCHHHHHHHhcCCCCEEEECHHHHHHHHHcC-CcccccccEEEEe
Confidence 9999999999999999999999999999999984 44443333 3357899999999999998765 6778999999999
Q ss_pred CchhhhccchHHHHHHHHHhCCC--CCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhH
Q 004567 221 EADRILDVGFKKALNAIVSQLPK--HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK 298 (744)
Q Consensus 221 EAh~lld~gf~~~l~~Il~~lp~--~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~k 298 (744)
|||++++++|...+..++..+|. .+++++||||++..+..++...+.+|.++.+.... .....+.+.+..+....|
T Consensus 165 Ead~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~--~~~~~i~~~~~~~~~~~k 242 (423)
T PRK04837 165 EADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQ--KTGHRIKEELFYPSNEEK 242 (423)
T ss_pred cHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCC--cCCCceeEEEEeCCHHHH
Confidence 99999999999999999999985 56789999999999999999999999888765443 334566777777778889
Q ss_pred HHHHHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccc
Q 004567 299 LDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLD 377 (744)
Q Consensus 299 l~~L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlD 377 (744)
...|..++......++||||+++..|+.++..|... |+.+..+||+|++.+|..+++.|++ +..|||||++++||||
T Consensus 243 ~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~--g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiD 320 (423)
T PRK04837 243 MRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAAD--GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLH 320 (423)
T ss_pred HHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhC--CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCC
Confidence 999999998877889999999999999999999875 8999999999999999999999999 9999999999999999
Q ss_pred cCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHHc
Q 004567 378 FNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA 431 (744)
Q Consensus 378 i~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~~ 431 (744)
| |+|++||+||+|.++..|+||+|||||.|+.|.+++|+++.+...+..+++.
T Consensus 321 i-p~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~ 373 (423)
T PRK04837 321 I-PAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETY 373 (423)
T ss_pred c-cccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHH
Confidence 9 9999999999999999999999999999999999999999998888888664
No 13
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=3.7e-59 Score=542.37 Aligned_cols=366 Identities=34% Similarity=0.522 Sum_probs=328.5
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEc
Q 004567 66 TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIIS 145 (744)
Q Consensus 66 ~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~ 145 (744)
.+|.+++|++.++++|.++||.+|||+|.++||.++.|+|+|++||||||||+||++|+++.+... ..++++|||+
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~----~~~~~~LIL~ 81 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE----LKAPQILVLA 81 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc----cCCCeEEEEe
Confidence 459999999999999999999999999999999999999999999999999999999999987543 3457899999
Q ss_pred CChHHHHHHHHHHHHhhccC-CceEEEEEcCccChHHHHH-hcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCch
Q 004567 146 PTRELADQLFDVLKAVGKHH-NFSAGLLIGGRRDVDMEKE-HVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEAD 223 (744)
Q Consensus 146 PtreLa~Qi~~~l~~~~~~~-~~~~~~l~Gg~~~~~~e~~-~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh 223 (744)
||++||.|+++.+..+.... ++.+..++| +.+...+.. ...+++|||+||++|++|+... .+.++++.+|||||||
T Consensus 82 PTreLa~Qv~~~l~~~~~~~~~i~v~~~~g-G~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~-~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 82 PTRELAVQVAEAMTDFSKHMRGVNVVALYG-GQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG-TLDLSKLSGLVLDEAD 159 (629)
T ss_pred CcHHHHHHHHHHHHHHHhhcCCceEEEEEC-CcCHHHHHHHhcCCCCEEEECHHHHHHHHHcC-CcchhhceEEEeccHH
Confidence 99999999999999987665 688888888 444444433 3457999999999999999875 5778999999999999
Q ss_pred hhhccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhHHHHHH
Q 004567 224 RILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLW 303 (744)
Q Consensus 224 ~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl~~L~ 303 (744)
.|++++|...+..|+..+|..+|+++||||+|..+..++..++.+|..+.+.... .+...+.+.|+.+....|...|.
T Consensus 160 ~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~--~~~~~i~q~~~~v~~~~k~~~L~ 237 (629)
T PRK11634 160 EMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSV--TTRPDISQSYWTVWGMRKNEALV 237 (629)
T ss_pred HHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCcc--ccCCceEEEEEEechhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999887665433 34456778888888888999999
Q ss_pred HHHHHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCC
Q 004567 304 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAV 382 (744)
Q Consensus 304 ~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V 382 (744)
.++......++||||+|+..+..+++.|... ++.+..+||+|++.+|..+++.|++ +..|||||+++++|||+ |+|
T Consensus 238 ~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~--g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDi-p~V 314 (629)
T PRK11634 238 RFLEAEDFDAAIIFVRTKNATLEVAEALERN--GYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDV-ERI 314 (629)
T ss_pred HHHHhcCCCCEEEEeccHHHHHHHHHHHHhC--CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCc-ccC
Confidence 9998877789999999999999999999885 8999999999999999999999999 99999999999999999 999
Q ss_pred cEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHHc-CCCcccccccc
Q 004567 383 DWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTKANT 442 (744)
Q Consensus 383 ~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~~-~i~i~~~~~~~ 442 (744)
++||+||+|.++..|+||+|||||+|+.|.+++|+++.+..+++.+++. ++.+....+..
T Consensus 315 ~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~ 375 (629)
T PRK11634 315 SLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPN 375 (629)
T ss_pred CEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceecCCc
Confidence 9999999999999999999999999999999999999999999999876 66666655443
No 14
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.8e-59 Score=539.80 Aligned_cols=364 Identities=33% Similarity=0.533 Sum_probs=320.3
Q ss_pred CcCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhcc-CCCCCCce
Q 004567 62 YVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKER-WGPEDGVG 140 (744)
Q Consensus 62 ~~~~~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~-~~~~~g~~ 140 (744)
+.+..+|+++++++.++++|.++||..|||+|.++||.+++|+|+|++||||||||++|++|++..+.... .....++.
T Consensus 126 p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~ 205 (545)
T PTZ00110 126 PKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPI 205 (545)
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcE
Confidence 34567899999999999999999999999999999999999999999999999999999999998876542 22345788
Q ss_pred EEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEc
Q 004567 141 SIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILD 220 (744)
Q Consensus 141 aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlD 220 (744)
+|||+|||+||.|+++.+..++...++.+.+++||............+++|+|+||++|++++... ...+.++.+||||
T Consensus 206 ~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~-~~~l~~v~~lViD 284 (545)
T PTZ00110 206 VLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESN-VTNLRRVTYLVLD 284 (545)
T ss_pred EEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcC-CCChhhCcEEEee
Confidence 999999999999999999999988889999999955444444445568999999999999999875 5668999999999
Q ss_pred CchhhhccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcC-CCccccccccccccCccccceeEEEcChhhHH
Q 004567 221 EADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLK-DPQYLSVHEESVTATPNRLQQTAMIVPLEQKL 299 (744)
Q Consensus 221 EAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~-~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl 299 (744)
|||+|++++|...+..|+..+++.+|+++||||++..+..++..++. +|..+.+.... ......+.+.+..+....|.
T Consensus 285 EAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~-l~~~~~i~q~~~~~~~~~k~ 363 (545)
T PTZ00110 285 EADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLD-LTACHNIKQEVFVVEEHEKR 363 (545)
T ss_pred hHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCc-cccCCCeeEEEEEEechhHH
Confidence 99999999999999999999999999999999999999999887775 56666554332 23345677778788888888
Q ss_pred HHHHHHHHHh--CCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEcccccccc
Q 004567 300 DMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGL 376 (744)
Q Consensus 300 ~~L~~lLk~~--~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGl 376 (744)
..|..++... ...++||||+|+..|+.++..|... ++++..+||++++.+|..+++.|++ ...|||||++++|||
T Consensus 364 ~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~--g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGI 441 (545)
T PTZ00110 364 GKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLD--GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGL 441 (545)
T ss_pred HHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHc--CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCC
Confidence 8888888765 3679999999999999999999864 8999999999999999999999999 899999999999999
Q ss_pred ccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHH
Q 004567 377 DFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLRE 430 (744)
Q Consensus 377 Di~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~ 430 (744)
|| |+|++||+||+|.++.+|+||+|||||.|+.|.|++|+++.+...+..|.+
T Consensus 442 Di-~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~ 494 (545)
T PTZ00110 442 DV-KDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVK 494 (545)
T ss_pred Cc-ccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHH
Confidence 99 999999999999999999999999999999999999999998766665544
No 15
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=9e-59 Score=526.69 Aligned_cols=360 Identities=33% Similarity=0.530 Sum_probs=323.3
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEc
Q 004567 66 TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIIS 145 (744)
Q Consensus 66 ~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~ 145 (744)
.+|++++|++.++++|..+||..|||+|.+|||.++.|+|++++||||||||++|++|+++.+... ..+.++|||+
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~----~~~~~~lil~ 79 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK----RFRVQALVLC 79 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc----cCCceEEEEe
Confidence 469999999999999999999999999999999999999999999999999999999999998543 2356799999
Q ss_pred CChHHHHHHHHHHHHhhccC-CceEEEEEcCccChHHHHH-hcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCch
Q 004567 146 PTRELADQLFDVLKAVGKHH-NFSAGLLIGGRRDVDMEKE-HVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEAD 223 (744)
Q Consensus 146 PtreLa~Qi~~~l~~~~~~~-~~~~~~l~Gg~~~~~~e~~-~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh 223 (744)
||++||.|+.+.++.++... ++.+..++| +.+...... ...+++|+|||||+|.+++... .+.+.++++|||||||
T Consensus 80 PtreLa~Q~~~~~~~~~~~~~~~~v~~~~G-g~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~-~~~l~~l~~lViDEad 157 (460)
T PRK11776 80 PTRELADQVAKEIRRLARFIPNIKVLTLCG-GVPMGPQIDSLEHGAHIIVGTPGRILDHLRKG-TLDLDALNTLVLDEAD 157 (460)
T ss_pred CCHHHHHHHHHHHHHHHhhCCCcEEEEEEC-CCChHHHHHHhcCCCCEEEEChHHHHHHHHcC-CccHHHCCEEEEECHH
Confidence 99999999999999988654 688888888 555544433 3367999999999999999875 5678999999999999
Q ss_pred hhhccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhHHHHHH
Q 004567 224 RILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLW 303 (744)
Q Consensus 224 ~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl~~L~ 303 (744)
+|++++|...+..++..+|..+|+++||||+++.+..++..++.+|..+.+.... ....+.+.++.++...|+..|.
T Consensus 158 ~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~---~~~~i~~~~~~~~~~~k~~~l~ 234 (460)
T PRK11776 158 RMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH---DLPAIEQRFYEVSPDERLPALQ 234 (460)
T ss_pred HHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC---CCCCeeEEEEEeCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887765433 2345778888888888999999
Q ss_pred HHHHHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCC
Q 004567 304 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAV 382 (744)
Q Consensus 304 ~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V 382 (744)
.++..+...++||||+|+..++.+++.|... ++.+..+||+|++.+|..+++.|++ ...|||||+++++|||+ |+|
T Consensus 235 ~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~--~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi-~~v 311 (460)
T PRK11776 235 RLLLHHQPESCVVFCNTKKECQEVADALNAQ--GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDI-KAL 311 (460)
T ss_pred HHHHhcCCCceEEEECCHHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccch-hcC
Confidence 9998888889999999999999999999885 8999999999999999999999999 89999999999999999 999
Q ss_pred cEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHHc-CCCccc
Q 004567 383 DWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHF 437 (744)
Q Consensus 383 ~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~~-~i~i~~ 437 (744)
++||+||+|.++.+|+||+|||||.|..|.+++|+.+.+...+..+++. +.++..
T Consensus 312 ~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~ 367 (460)
T PRK11776 312 EAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNW 367 (460)
T ss_pred CeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCce
Confidence 9999999999999999999999999999999999999998888888664 444433
No 16
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.4e-58 Score=534.49 Aligned_cols=360 Identities=31% Similarity=0.516 Sum_probs=321.8
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccC---CCCCCceEE
Q 004567 66 TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERW---GPEDGVGSI 142 (744)
Q Consensus 66 ~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~---~~~~g~~aL 142 (744)
.+|++++|++.++++|.++||..|||+|.++||.++.|+|++++||||||||++|++|+++.+..... ....+.++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 36999999999999999999999999999999999999999999999999999999999999865321 112357899
Q ss_pred EEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHH-hcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcC
Q 004567 143 IISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKE-HVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDE 221 (744)
Q Consensus 143 Il~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~-~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDE 221 (744)
||+||++||.|+++.+..++...++.+..++| +........ ...+++|||+||++|++++.....+.+.++++|||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~G-g~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDE 167 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYG-GVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE 167 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEEC-CCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecC
Confidence 99999999999999999999999999999999 444444333 3457899999999999999876667788999999999
Q ss_pred chhhhccchHHHHHHHHHhCCC--CCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhHH
Q 004567 222 ADRILDVGFKKALNAIVSQLPK--HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKL 299 (744)
Q Consensus 222 Ah~lld~gf~~~l~~Il~~lp~--~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl 299 (744)
||+|++++|...+..|+..++. .+|+++||||++..+..++..++.+|..+.+.... .+...+.+.++.+....++
T Consensus 168 Ah~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~--~~~~~i~q~~~~~~~~~k~ 245 (572)
T PRK04537 168 ADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETET--ITAARVRQRIYFPADEEKQ 245 (572)
T ss_pred HHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecccc--ccccceeEEEEecCHHHHH
Confidence 9999999999999999999987 68999999999999999999888888766554432 3445677888888888899
Q ss_pred HHHHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEcccccccccc
Q 004567 300 DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDF 378 (744)
Q Consensus 300 ~~L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi 378 (744)
..|..++......++||||+|+..|+.+++.|... ++.+..+||+|++.+|..+++.|++ ...|||||+++++||||
T Consensus 246 ~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~--g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDi 323 (572)
T PRK04537 246 TLLLGLLSRSEGARTMVFVNTKAFVERVARTLERH--GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHI 323 (572)
T ss_pred HHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHc--CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCc
Confidence 99999998877889999999999999999999885 8999999999999999999999999 99999999999999999
Q ss_pred CCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHHc
Q 004567 379 NKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA 431 (744)
Q Consensus 379 ~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~~ 431 (744)
|+|++||+||+|.++..|+||+|||||.|..|.|++|+++.+..++..+++.
T Consensus 324 -p~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~ 375 (572)
T PRK04537 324 -DGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAY 375 (572)
T ss_pred -cCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888777777654
No 17
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.1e-58 Score=522.48 Aligned_cols=358 Identities=31% Similarity=0.508 Sum_probs=320.5
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCC--CCCCceEEEE
Q 004567 67 RFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWG--PEDGVGSIII 144 (744)
Q Consensus 67 ~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~--~~~g~~aLIl 144 (744)
+|++++|++.++++|.++||..||++|.++||.++.|+|+|++||||||||++|++|+++.+...... .....++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 59999999999999999999999999999999999999999999999999999999999998654321 1234579999
Q ss_pred cCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHH-HHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCch
Q 004567 145 SPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDME-KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEAD 223 (744)
Q Consensus 145 ~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e-~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh 223 (744)
+||++||.|+++.++.++...++.+..++|+ .+.... ......++|+||||++|++++... .+.++++++|||||||
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg-~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~-~~~l~~v~~lViDEah 159 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGG-VSINPQMMKLRGGVDVLVATPGRLLDLEHQN-AVKLDQVEILVLDEAD 159 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECC-cCHHHHHHHHcCCCcEEEEChHHHHHHHHcC-CcccccceEEEeecHH
Confidence 9999999999999999998888999999984 444333 344467999999999999988765 5678999999999999
Q ss_pred hhhccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhHHHHHH
Q 004567 224 RILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLW 303 (744)
Q Consensus 224 ~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl~~L~ 303 (744)
++++++|...+..++..++..+|+++||||++..+..++...+.+|..+.+.... .....+.+.+..++...+...|.
T Consensus 160 ~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~~i~~~~~~~~~~~k~~~l~ 237 (456)
T PRK10590 160 RMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN--TASEQVTQHVHFVDKKRKRELLS 237 (456)
T ss_pred HHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc--ccccceeEEEEEcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998877664432 23456778888888888888888
Q ss_pred HHHHHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCC
Q 004567 304 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAV 382 (744)
Q Consensus 304 ~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V 382 (744)
.++......++||||+++..++.+++.|... ++.+..+||+|++.+|..+++.|++ ...|||||+++++|||| |+|
T Consensus 238 ~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDi-p~v 314 (456)
T PRK10590 238 QMIGKGNWQQVLVFTRTKHGANHLAEQLNKD--GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDI-EEL 314 (456)
T ss_pred HHHHcCCCCcEEEEcCcHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCc-ccC
Confidence 8888777789999999999999999999875 8999999999999999999999999 89999999999999999 999
Q ss_pred cEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHHc
Q 004567 383 DWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA 431 (744)
Q Consensus 383 ~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~~ 431 (744)
++||+|++|.++.+|+||+|||||.|..|.+++|+++.+..+++.+++.
T Consensus 315 ~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~ 363 (456)
T PRK10590 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKL 363 (456)
T ss_pred CEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888888664
No 18
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-60 Score=480.50 Aligned_cols=365 Identities=31% Similarity=0.494 Sum_probs=338.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEE
Q 004567 64 GSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSII 143 (744)
Q Consensus 64 ~~~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLI 143 (744)
....|+++.|...++.++.+.||..|+|+|.++||.++.|+|+++.|..|+|||.||.+|+|+.+-.. ....+++|
T Consensus 83 kG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~----~~~IQ~~i 158 (459)
T KOG0326|consen 83 KGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK----KNVIQAII 158 (459)
T ss_pred cCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc----ccceeEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999998443 45688999
Q ss_pred EcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhc-CCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCc
Q 004567 144 ISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV-NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEA 222 (744)
Q Consensus 144 l~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~-~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEA 222 (744)
++||||||.|+..++..++++.++.+...+| |++......++ ...+++|+||||+++++... .-.++...++|+|||
T Consensus 159 lVPtrelALQtSqvc~~lskh~~i~vmvttG-GT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~Kg-Va~ls~c~~lV~DEA 236 (459)
T KOG0326|consen 159 LVPTRELALQTSQVCKELSKHLGIKVMVTTG-GTSLRDDIMRLNQTVHLVVGTPGRILDLAKKG-VADLSDCVILVMDEA 236 (459)
T ss_pred EeecchhhHHHHHHHHHHhcccCeEEEEecC-CcccccceeeecCceEEEEcCChhHHHHHhcc-cccchhceEEEechh
Confidence 9999999999999999999999999998888 66666665555 46899999999999999876 456799999999999
Q ss_pred hhhhccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhHHHHH
Q 004567 223 DRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDML 302 (744)
Q Consensus 223 h~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl~~L 302 (744)
|.+++..|...+..++..+|+.+|++++|||+|-.+..+...++.+|..|....+ .++..+.|+|..+....|+.-|
T Consensus 237 DKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e---Ltl~GvtQyYafV~e~qKvhCL 313 (459)
T KOG0326|consen 237 DKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE---LTLKGVTQYYAFVEERQKVHCL 313 (459)
T ss_pred hhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhh---hhhcchhhheeeechhhhhhhH
Confidence 9999999999999999999999999999999999999999999999999887654 4678899999999999999988
Q ss_pred HHHHHHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCC
Q 004567 303 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKA 381 (744)
Q Consensus 303 ~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~ 381 (744)
..++....-...||||||...|+.++..+.++ |++++++|+.|.|+.|..++..|++ .++.|||||.+.||||+ ++
T Consensus 314 ntLfskLqINQsIIFCNS~~rVELLAkKITel--GyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDi-qa 390 (459)
T KOG0326|consen 314 NTLFSKLQINQSIIFCNSTNRVELLAKKITEL--GYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDI-QA 390 (459)
T ss_pred HHHHHHhcccceEEEeccchHhHHHHHHHHhc--cchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhccccc-ce
Confidence 88888877889999999999999999999997 9999999999999999999999999 99999999999999999 99
Q ss_pred CcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHHc-CCCcccccc
Q 004567 382 VDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTKA 440 (744)
Q Consensus 382 V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~~-~i~i~~~~~ 440 (744)
|++|||||+|.++++|.||+||+||+|.-|.++.+++-.+...+..+++. +-+|..+..
T Consensus 391 vNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~ 450 (459)
T KOG0326|consen 391 VNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPS 450 (459)
T ss_pred eeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCC
Confidence 99999999999999999999999999999999999999999999999987 766666543
No 19
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.4e-57 Score=522.33 Aligned_cols=361 Identities=27% Similarity=0.452 Sum_probs=316.9
Q ss_pred cCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhcc---CCCCCCc
Q 004567 63 VGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKER---WGPEDGV 139 (744)
Q Consensus 63 ~~~~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~---~~~~~g~ 139 (744)
.+..+|.+++|++.++..|...||..|||+|.+|||.+++|+|++++||||||||++|++|++..+.... .....+.
T Consensus 118 ~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~ 197 (518)
T PLN00206 118 PPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNP 197 (518)
T ss_pred chhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCc
Confidence 5677899999999999999999999999999999999999999999999999999999999999876432 1223578
Q ss_pred eEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEE
Q 004567 140 GSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILIL 219 (744)
Q Consensus 140 ~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVl 219 (744)
.+|||+|||+||.|+++.++.++...++.+.+++||............+++|+|+|||+|++++... .+.++++.+|||
T Consensus 198 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~-~~~l~~v~~lVi 276 (518)
T PLN00206 198 LAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH-DIELDNVSVLVL 276 (518)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC-CccchheeEEEe
Confidence 8999999999999999999999988888888899844433333334467999999999999998876 677899999999
Q ss_pred cCchhhhccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhHH
Q 004567 220 DEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKL 299 (744)
Q Consensus 220 DEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl 299 (744)
||||+|+++||...+..|+..++ .+|+++||||++..+..++..++.++..+.+.... .....+.+.+..+....+.
T Consensus 277 DEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~--~~~~~v~q~~~~~~~~~k~ 353 (518)
T PLN00206 277 DEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPN--RPNKAVKQLAIWVETKQKK 353 (518)
T ss_pred ecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCC--CCCcceeEEEEeccchhHH
Confidence 99999999999999999999986 68999999999999999999999888877765443 2345567778888888888
Q ss_pred HHHHHHHHHhC--CCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEcccccccc
Q 004567 300 DMLWSFIKAHL--NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGL 376 (744)
Q Consensus 300 ~~L~~lLk~~~--~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGl 376 (744)
..|+.++.... ..++||||+|+..++.++..|... .++.+..+||+|++.+|..+++.|+. ...|||||++++|||
T Consensus 354 ~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~-~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGi 432 (518)
T PLN00206 354 QKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVV-TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGV 432 (518)
T ss_pred HHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhc-cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccC
Confidence 88888887643 468999999999999999999753 48899999999999999999999999 899999999999999
Q ss_pred ccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHH
Q 004567 377 DFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLR 429 (744)
Q Consensus 377 Di~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~ 429 (744)
|| |+|++||+||+|.++.+|+||+|||||.|..|.+++|+++.+...+..|.
T Consensus 433 Di-p~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~ 484 (518)
T PLN00206 433 DL-LRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELV 484 (518)
T ss_pred Cc-ccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHH
Confidence 99 99999999999999999999999999999999999999998876555543
No 20
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-59 Score=487.82 Aligned_cols=360 Identities=33% Similarity=0.515 Sum_probs=323.0
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCC--CCCCceEE
Q 004567 65 STRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWG--PEDGVGSI 142 (744)
Q Consensus 65 ~~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~--~~~g~~aL 142 (744)
..+|++++|++.+++++.+.||..||-||..|||++|.|+|+++.|.||||||+||++|+++.|+..+.. ...|+.++
T Consensus 18 ~ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~ 97 (569)
T KOG0346|consen 18 EKTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAV 97 (569)
T ss_pred hccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeE
Confidence 3679999999999999999999999999999999999999999999999999999999999999876543 46688999
Q ss_pred EEcCChHHHHHHHHHHHHhhccCC--ceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEc
Q 004567 143 IISPTRELADQLFDVLKAVGKHHN--FSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILD 220 (744)
Q Consensus 143 Il~PtreLa~Qi~~~l~~~~~~~~--~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlD 220 (744)
||+||+|||.|++.++.++....+ +.+.-+..+..+..........++|+|+||++++.|+.......+..+.++|+|
T Consensus 98 iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvD 177 (569)
T KOG0346|consen 98 ILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVD 177 (569)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEec
Confidence 999999999999999998765433 333334432333333455567899999999999999998876778999999999
Q ss_pred CchhhhccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhHHH
Q 004567 221 EADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLD 300 (744)
Q Consensus 221 EAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl~ 300 (744)
|||.++..||...+..+.+++|+..|.++||||++.++..+..+++.+|..+.+.+.... .+..+.|+++.|...+|+.
T Consensus 178 EADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~-~~dqL~Qy~v~cse~DKfl 256 (569)
T KOG0346|consen 178 EADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELP-NPDQLTQYQVKCSEEDKFL 256 (569)
T ss_pred hhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCC-CcccceEEEEEeccchhHH
Confidence 999999999999999999999999999999999999999999999999999988877654 7789999999999999999
Q ss_pred HHHHHHHHhC-CCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEcc--------
Q 004567 301 MLWSFIKAHL-NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD-------- 370 (744)
Q Consensus 301 ~L~~lLk~~~-~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTd-------- 370 (744)
.++.+++-.. .+++|||+||...|..+.-.|... |++.+.+.|.|+...|..++++|.. -+.|+||||
T Consensus 257 llyallKL~LI~gKsliFVNtIdr~YrLkLfLeqF--GiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~ 334 (569)
T KOG0346|consen 257 LLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQF--GIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKL 334 (569)
T ss_pred HHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHh--CcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhh
Confidence 9999998654 899999999999999998888775 9999999999999999999999999 889999999
Q ss_pred ---------------------------ccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHH
Q 004567 371 ---------------------------VASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 423 (744)
Q Consensus 371 ---------------------------v~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~ 423 (744)
-++||||| ..|.+|||||+|.++..||||+|||||+++.|.++.|+.|.+..
T Consensus 335 eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF-~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 335 EEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDF-HHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEF 413 (569)
T ss_pred hccccccccccCCCCccccccccCchhchhccccc-hheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHh
Confidence 24799999 89999999999999999999999999999999999999999886
Q ss_pred HHHHH
Q 004567 424 MLEKL 428 (744)
Q Consensus 424 ~l~~l 428 (744)
-...|
T Consensus 414 g~~~l 418 (569)
T KOG0346|consen 414 GKESL 418 (569)
T ss_pred hhhHH
Confidence 33333
No 21
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.4e-57 Score=511.50 Aligned_cols=358 Identities=34% Similarity=0.550 Sum_probs=317.2
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcC
Q 004567 67 RFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISP 146 (744)
Q Consensus 67 ~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~P 146 (744)
.|++++|++.++++|..+||..||++|.++||.++.|+|++++||||||||++|++|+++.+.........+.++|||+|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 59999999999999999999999999999999999999999999999999999999999998754333334578999999
Q ss_pred ChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhh
Q 004567 147 TRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRIL 226 (744)
Q Consensus 147 treLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~ll 226 (744)
|++||.|+++.+..++...++.++.++|+............+++|+|||||+|++++... .+.+.++++|||||||+|+
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~-~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEE-NFDCRAVETLILDEADRML 160 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC-CcCcccCCEEEEECHHHHh
Confidence 999999999999999999999999999944333333334457899999999999998775 6778999999999999999
Q ss_pred ccchHHHHHHHHHhCCCCCcEEEEeeccCh-hHHHHHHHhcCCCccccccccccccCccccceeEEEcC-hhhHHHHHHH
Q 004567 227 DVGFKKALNAIVSQLPKHRQTFLFSATQTK-SVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP-LEQKLDMLWS 304 (744)
Q Consensus 227 d~gf~~~l~~Il~~lp~~~q~ll~SAT~~~-~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~-~~~kl~~L~~ 304 (744)
+++|...+..+...++..+|+++||||++. .+..++...+.+|..+.+.... .....+.+.+..+. ...+...|..
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~i~~~~~~~~~~~~k~~~l~~ 238 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSR--RERKKIHQWYYRADDLEHKTALLCH 238 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCc--ccccCceEEEEEeCCHHHHHHHHHH
Confidence 999999999999999999999999999985 5788888888888777654332 23345666666665 4678888888
Q ss_pred HHHHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCc
Q 004567 305 FIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVD 383 (744)
Q Consensus 305 lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~ 383 (744)
++......++||||+++..++.++..|... ++.+..+||+|++.+|..+++.|++ ...|||||+++++|||+ |+|+
T Consensus 239 l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDi-p~v~ 315 (434)
T PRK11192 239 LLKQPEVTRSIVFVRTRERVHELAGWLRKA--GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDI-DDVS 315 (434)
T ss_pred HHhcCCCCeEEEEeCChHHHHHHHHHHHhC--CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccC-CCCC
Confidence 888766789999999999999999999874 8999999999999999999999999 99999999999999999 9999
Q ss_pred EEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHH
Q 004567 384 WVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLRE 430 (744)
Q Consensus 384 ~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~ 430 (744)
+||+||+|.+...|+||+|||||.|..|.+++|++..+..++..+++
T Consensus 316 ~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~ 362 (434)
T PRK11192 316 HVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIER 362 (434)
T ss_pred EEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888888765
No 22
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-58 Score=480.70 Aligned_cols=362 Identities=31% Similarity=0.477 Sum_probs=322.9
Q ss_pred cCCCCCCC-CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhcc--CCCCCCc
Q 004567 63 VGSTRFDQ-LPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKER--WGPEDGV 139 (744)
Q Consensus 63 ~~~~~F~~-l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~--~~~~~g~ 139 (744)
.+..+|++ +.-.+.+...+++.||.+|||||.+|||.+|+|.|++++|.||+|||++||+|-+-++.... .....++
T Consensus 216 nP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p 295 (629)
T KOG0336|consen 216 NPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGP 295 (629)
T ss_pred CCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCC
Confidence 34556766 46789999999999999999999999999999999999999999999999999887664332 2235688
Q ss_pred eEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEE
Q 004567 140 GSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILIL 219 (744)
Q Consensus 140 ~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVl 219 (744)
++|+++|||+||.|+.-...+.. +.++...|++||+..........++..|+|||||+|.++...+ .+++.++.+|||
T Consensus 296 ~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n-~i~l~siTYlVl 373 (629)
T KOG0336|consen 296 GVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDN-VINLASITYLVL 373 (629)
T ss_pred ceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcC-eeeeeeeEEEEe
Confidence 99999999999999988887764 5578888999977776666667789999999999999877665 678899999999
Q ss_pred cCchhhhccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhHH
Q 004567 220 DEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKL 299 (744)
Q Consensus 220 DEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl 299 (744)
||||+|+||||..++..|+-.+.+.+|+++.|||+|..|..|+..++++|..+.+..-...+ ...+.|.+++....+|+
T Consensus 374 DEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a-~~sVkQ~i~v~~d~~k~ 452 (629)
T KOG0336|consen 374 DEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVA-VKSVKQNIIVTTDSEKL 452 (629)
T ss_pred cchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceee-eeeeeeeEEecccHHHH
Confidence 99999999999999999999999999999999999999999999999999999887766544 35677888888888999
Q ss_pred HHHHHHHHHhC-CCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccc
Q 004567 300 DMLWSFIKAHL-NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLD 377 (744)
Q Consensus 300 ~~L~~lLk~~~-~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlD 377 (744)
..+..|+..+. +.++||||+..-.++.+..-|.- .|+..-+|||+-.|.+|...++.|+. ..+||||||+++||||
T Consensus 453 ~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l--~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlD 530 (629)
T KOG0336|consen 453 EIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCL--KGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLD 530 (629)
T ss_pred HHHHHHHHhcCCCceEEEEEechhhhhhccchhhh--cccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCC
Confidence 98888988765 78999999999999999888865 49999999999999999999999999 9999999999999999
Q ss_pred cCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHH
Q 004567 378 FNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLRE 430 (744)
Q Consensus 378 i~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~ 430 (744)
+ |+|.||++||+|.+++.|+||+|||||+|+.|.++.|++.++..+...|.+
T Consensus 531 v-~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ 582 (629)
T KOG0336|consen 531 V-PDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQ 582 (629)
T ss_pred c-hhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHH
Confidence 9 999999999999999999999999999999999999999998877776643
No 23
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-57 Score=494.81 Aligned_cols=360 Identities=33% Similarity=0.497 Sum_probs=319.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccC------CCCC
Q 004567 64 GSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERW------GPED 137 (744)
Q Consensus 64 ~~~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~------~~~~ 137 (744)
....|++..+.+.+...++..||..|||+|+.+||.+..|+|++++|+||||||.|||+|++..++.++. ....
T Consensus 72 ~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~ 151 (482)
T KOG0335|consen 72 HIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGV 151 (482)
T ss_pred CcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCC
Confidence 3447998899999999999999999999999999999999999999999999999999999999988643 1223
Q ss_pred CceEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEE
Q 004567 138 GVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQIL 217 (744)
Q Consensus 138 g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~l 217 (744)
.+++||++||||||.|+|...+++.....+.++.++||..-........++++|+|||||+|.+.+... .+.+.++.+|
T Consensus 152 ~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g-~i~l~~~k~~ 230 (482)
T KOG0335|consen 152 YPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERG-KISLDNCKFL 230 (482)
T ss_pred CCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcc-eeehhhCcEE
Confidence 588999999999999999999999988899999999953333444445578999999999999988776 6788999999
Q ss_pred EEcCchhhhc-cchHHHHHHHHHhCCC----CCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEE
Q 004567 218 ILDEADRILD-VGFKKALNAIVSQLPK----HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMI 292 (744)
Q Consensus 218 VlDEAh~lld-~gf~~~l~~Il~~lp~----~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~ 292 (744)
||||||+|+| |+|.+.|..|+..... .+|+++||||+|..+..++..++.+- |+.+.......+..++.|.+..
T Consensus 231 vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~-yi~laV~rvg~~~~ni~q~i~~ 309 (482)
T KOG0335|consen 231 VLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDN-YIFLAVGRVGSTSENITQKILF 309 (482)
T ss_pred EecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhcc-ceEEEEeeeccccccceeEeee
Confidence 9999999999 9999999999998754 68999999999999999998888762 4444445556778999999999
Q ss_pred cChhhHHHHHHHHHHHhC----CC-----cEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-c
Q 004567 293 VPLEQKLDMLWSFIKAHL----NS-----KILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K 362 (744)
Q Consensus 293 ~~~~~kl~~L~~lLk~~~----~~-----k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~ 362 (744)
+....|...|++++.... .. +++|||.|++.|.++...|... ++++..+||..++.+|.+.++.|+. .
T Consensus 310 V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~--~~~~~sIhg~~tq~er~~al~~Fr~g~ 387 (482)
T KOG0335|consen 310 VNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN--GYPAKSIHGDRTQIEREQALNDFRNGK 387 (482)
T ss_pred ecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC--CCCceeecchhhhhHHHHHHHHhhcCC
Confidence 999999999999997543 33 8999999999999999999875 9999999999999999999999999 8
Q ss_pred CCeEEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHH
Q 004567 363 RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 428 (744)
Q Consensus 363 ~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l 428 (744)
..+||||++++||||| |+|++||+||+|.+..+|+||||||||.|..|.++.|+........+.|
T Consensus 388 ~pvlVaT~VaaRGlDi-~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L 452 (482)
T KOG0335|consen 388 APVLVATNVAARGLDI-PNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKAL 452 (482)
T ss_pred cceEEEehhhhcCCCC-CCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHH
Confidence 9999999999999999 9999999999999999999999999999999999999996555444444
No 24
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-58 Score=492.38 Aligned_cols=362 Identities=34% Similarity=0.519 Sum_probs=308.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC-CCEEEEccCCCchhHHhHHHHHHHHHhccC-------CC
Q 004567 64 GSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCG-RDILGAAKTGSGKTLAFVIPVLEKLYKERW-------GP 135 (744)
Q Consensus 64 ~~~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g-~dvlv~a~TGSGKTla~llpil~~L~~~~~-------~~ 135 (744)
...-|.+|+++..++.+|..+||..||+||..+||.+..| .|||+.|.|||||||||-|||++.+....- ..
T Consensus 179 DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~ 258 (731)
T KOG0347|consen 179 DVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTS 258 (731)
T ss_pred ChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHH
Confidence 4556999999999999999999999999999999999999 899999999999999999999995543110 11
Q ss_pred CCCc--eEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCC--CC
Q 004567 136 EDGV--GSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNF--DC 211 (744)
Q Consensus 136 ~~g~--~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~--~~ 211 (744)
..++ .+||++||||||.|+...+..++...++.+..++||-...+++......++|+|+|||||..++.+...+ ++
T Consensus 259 ~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~ 338 (731)
T KOG0347|consen 259 AKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNF 338 (731)
T ss_pred hccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhh
Confidence 2233 4999999999999999999999999999999999966656666666678999999999999999876432 46
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCC-----CCCcEEEEeeccChhH---------------------HHHH-HH
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLP-----KHRQTFLFSATQTKSV---------------------QDLA-RL 264 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp-----~~~q~ll~SAT~~~~v---------------------~~la-~~ 264 (744)
..+.+|||||||||++.|+...+..|+..+. ..+|++.||||++-.. ..+. ..
T Consensus 339 k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~i 418 (731)
T KOG0347|consen 339 KKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKI 418 (731)
T ss_pred hhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHh
Confidence 8899999999999999999999999988775 4589999999976331 1121 12
Q ss_pred hc-CCCccccccccccccCccccceeEEEcChhhHHHHHHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEe
Q 004567 265 SL-KDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCL 343 (744)
Q Consensus 265 ~l-~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl~~L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~l 343 (744)
++ ..|.+|.+... ..+...+....+.|+..+|--.|+.||..+ .+++|||||++..+.+++-+|+.+ +++.+.|
T Consensus 419 g~~~kpkiiD~t~q--~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry-PGrTlVF~NsId~vKRLt~~L~~L--~i~p~~L 493 (731)
T KOG0347|consen 419 GFRGKPKIIDLTPQ--SATASTLTESLIECPPLEKDLYLYYFLTRY-PGRTLVFCNSIDCVKRLTVLLNNL--DIPPLPL 493 (731)
T ss_pred CccCCCeeEecCcc--hhHHHHHHHHhhcCCccccceeEEEEEeec-CCceEEEechHHHHHHHHHHHhhc--CCCCchh
Confidence 23 24555544333 344556667777888888888888888877 689999999999999999999997 9999999
Q ss_pred eCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchH
Q 004567 344 YGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 422 (744)
Q Consensus 344 hg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~ 422 (744)
|+.|.|..|...+++|++ ..+|||||||++||||| |+|.|||||-.|.+.+.|+||.|||+|++..|.+++|+.|.+.
T Consensus 494 HA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDI-p~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~ 572 (731)
T KOG0347|consen 494 HASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDI-PGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEV 572 (731)
T ss_pred hHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCC-CCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHh
Confidence 999999999999999999 89999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc
Q 004567 423 KMLEKLREA 431 (744)
Q Consensus 423 ~~l~~l~~~ 431 (744)
..+.+|...
T Consensus 573 ~~~~KL~kt 581 (731)
T KOG0347|consen 573 GPLKKLCKT 581 (731)
T ss_pred HHHHHHHHH
Confidence 877777553
No 25
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.2e-55 Score=499.30 Aligned_cols=362 Identities=33% Similarity=0.513 Sum_probs=318.6
Q ss_pred cCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCC---CCCCc
Q 004567 63 VGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWG---PEDGV 139 (744)
Q Consensus 63 ~~~~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~---~~~g~ 139 (744)
.....|.+++|++.+..+|.++||..||+||.++|+.+++|+|+|+++|||||||++|++|+++.+...... ...+.
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 345679999999999999999999999999999999999999999999999999999999999998764211 11257
Q ss_pred eEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHh--cCCCcEEEEChHHHHHHHhcCCCCCCCCceEE
Q 004567 140 GSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEH--VNELNILVCTPGRLLQHMDETPNFDCSQLQIL 217 (744)
Q Consensus 140 ~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~--~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~l 217 (744)
++|||+||++||.|+++.++.++...++.+..++|| .+....... ...++|+|+||++|++++... .+.++++++|
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg-~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~-~~~l~~l~~l 241 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGG-MDFDKQLKQLEARFCDILVATPGRLLDFNQRG-EVHLDMVEVM 241 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEcc-CChHHHHHHHhCCCCCEEEECHHHHHHHHHcC-CcccccCceE
Confidence 899999999999999999999998889999999984 343333222 346899999999999988765 5568999999
Q ss_pred EEcCchhhhccchHHHHHHHHHhCCC--CCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcCh
Q 004567 218 ILDEADRILDVGFKKALNAIVSQLPK--HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPL 295 (744)
Q Consensus 218 VlDEAh~lld~gf~~~l~~Il~~lp~--~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~ 295 (744)
||||||++++++|...+..|+..++. .+|+++||||++..+..++..++.+|..+.+.... .....+.+.+..+..
T Consensus 242 ViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~ 319 (475)
T PRK01297 242 VLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPEN--VASDTVEQHVYAVAG 319 (475)
T ss_pred EechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCc--CCCCcccEEEEEecc
Confidence 99999999999999999999999875 57999999999999999999999988877665433 233456677777777
Q ss_pred hhHHHHHHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEcccccc
Q 004567 296 EQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASR 374 (744)
Q Consensus 296 ~~kl~~L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~ar 374 (744)
..+...|..++......++||||+++..++.+++.|... ++.+..+||++++.+|..+++.|++ ...|||||+++++
T Consensus 320 ~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~ 397 (475)
T PRK01297 320 SDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKD--GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGR 397 (475)
T ss_pred hhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcccccc
Confidence 788888999998877789999999999999999999875 8899999999999999999999999 8999999999999
Q ss_pred ccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHHc
Q 004567 375 GLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA 431 (744)
Q Consensus 375 GlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~~ 431 (744)
|||| |+|++||+||.|.++.+|+||+||+||.|..|.+++|+...+..++..+++.
T Consensus 398 GIDi-~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~ 453 (475)
T PRK01297 398 GIHI-DGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEEL 453 (475)
T ss_pred CCcc-cCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHH
Confidence 9999 9999999999999999999999999999999999999999888888888664
No 26
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=6.7e-58 Score=472.62 Aligned_cols=359 Identities=33% Similarity=0.508 Sum_probs=316.5
Q ss_pred CcCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhc----cCCCCC
Q 004567 62 YVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKE----RWGPED 137 (744)
Q Consensus 62 ~~~~~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~----~~~~~~ 137 (744)
+.+..+|.++-++..++++|++.|+.+|||||.+.+|.+|+|+|+|+.|-||||||++|.+|++-..+.+ .+.+..
T Consensus 166 pPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~E 245 (610)
T KOG0341|consen 166 PPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGE 245 (610)
T ss_pred CCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCC
Confidence 3467789999999999999999999999999999999999999999999999999999999987654433 355677
Q ss_pred CceEEEEcCChHHHHHHHHHHHHhhcc------CCceEEEEEcCccChHHHHHhc-CCCcEEEEChHHHHHHHhcCCCCC
Q 004567 138 GVGSIIISPTRELADQLFDVLKAVGKH------HNFSAGLLIGGRRDVDMEKEHV-NELNILVCTPGRLLQHMDETPNFD 210 (744)
Q Consensus 138 g~~aLIl~PtreLa~Qi~~~l~~~~~~------~~~~~~~l~Gg~~~~~~e~~~~-~~~~IlV~TPgrLl~~l~~~~~~~ 210 (744)
|+..|||||+||||.|+++.+..++.. ..+.+++.+| |-+........ .+.+|+|+|||||.+.+... .++
T Consensus 246 GP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciG-G~~v~eql~~v~~GvHivVATPGRL~DmL~KK-~~s 323 (610)
T KOG0341|consen 246 GPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIG-GVPVREQLDVVRRGVHIVVATPGRLMDMLAKK-IMS 323 (610)
T ss_pred CCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhc-CccHHHHHHHHhcCeeEEEcCcchHHHHHHHh-hcc
Confidence 999999999999999999999887643 3467888888 66666555444 68999999999999988765 677
Q ss_pred CCCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeE
Q 004567 211 CSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTA 290 (744)
Q Consensus 211 ~~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~ 290 (744)
++-.+++++||||||+|+||...+..|+.++...+|+++||||+|..+..+++..+..|..+++..... ..-++.|.+
T Consensus 324 Ld~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGA--AsldViQev 401 (610)
T KOG0341|consen 324 LDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGA--ASLDVIQEV 401 (610)
T ss_pred HHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccc--cchhHHHHH
Confidence 788899999999999999999999999999999999999999999999999999999999999876653 334455555
Q ss_pred EEcChhhHHHHHHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEc
Q 004567 291 MIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT 369 (744)
Q Consensus 291 ~~~~~~~kl~~L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaT 369 (744)
-.+..+.|+-.|++.|... ..++||||.....++.++++|-- .|+.++.+||+-.|++|...++.|+. +..|||||
T Consensus 402 EyVkqEaKiVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLl--KGVEavaIHGGKDQedR~~ai~afr~gkKDVLVAT 478 (610)
T KOG0341|consen 402 EYVKQEAKIVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLL--KGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVAT 478 (610)
T ss_pred HHHHhhhhhhhHHHHhccC-CCceEEEeccccChHHHHHHHHH--ccceeEEeecCcchhHHHHHHHHHhcCCCceEEEe
Confidence 5667778888888888765 68999999999999999999954 59999999999999999999999999 99999999
Q ss_pred cccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchH-HHHHHH
Q 004567 370 DVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM-KMLEKL 428 (744)
Q Consensus 370 dv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~-~~l~~l 428 (744)
|+++.|+|| |++.+|||||+|.+++.|+||+|||||.|+.|.+..|++.+.. ..|-.|
T Consensus 479 DVASKGLDF-p~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDL 537 (610)
T KOG0341|consen 479 DVASKGLDF-PDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDL 537 (610)
T ss_pred cchhccCCC-ccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHH
Confidence 999999999 9999999999999999999999999999999999999987644 333333
No 27
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-56 Score=471.58 Aligned_cols=366 Identities=33% Similarity=0.510 Sum_probs=330.4
Q ss_pred CcCCcCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhcc-CCCCC
Q 004567 59 FSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKER-WGPED 137 (744)
Q Consensus 59 ~~~~~~~~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~-~~~~~ 137 (744)
+++..+.++|++++++..+..++.+.-|.+|||+|.+++|.+++|+||+..|.||||||.||+.|++-++..+. ..+..
T Consensus 216 ~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~ 295 (731)
T KOG0339|consen 216 SSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGE 295 (731)
T ss_pred CCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCC
Confidence 45667888999999999999999999999999999999999999999999999999999999999999987654 45578
Q ss_pred CceEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEE
Q 004567 138 GVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQIL 217 (744)
Q Consensus 138 g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~l 217 (744)
|+-.||+||||+||.||+.++++|++.+++++++++||+..+.+......++.|||||||||++++... ..++.++.+|
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmK-atn~~rvS~L 374 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMK-ATNLSRVSYL 374 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhh-cccceeeeEE
Confidence 999999999999999999999999999999999999988777777777789999999999999999876 6778999999
Q ss_pred EEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChh-
Q 004567 218 ILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLE- 296 (744)
Q Consensus 218 VlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~- 296 (744)
||||||+|+++||..++..|..++.+.+|+|+||||++..+..+++..|.+|..+... .+......+.|.+.+|+.+
T Consensus 375 V~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg--~vgean~dITQ~V~V~~s~~ 452 (731)
T KOG0339|consen 375 VLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQG--EVGEANEDITQTVSVCPSEE 452 (731)
T ss_pred EEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEe--ehhccccchhheeeeccCcH
Confidence 9999999999999999999999999999999999999999999999999999887665 3344556778888777765
Q ss_pred hHHHHHHHHHHH-hCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEcccccc
Q 004567 297 QKLDMLWSFIKA-HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASR 374 (744)
Q Consensus 297 ~kl~~L~~lLk~-~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~ar 374 (744)
.|+.-|..-|-. ...+++|||+.-...++.+...|.. .++.+..+||+|.|.+|.+++..|+. ...|||+||+++|
T Consensus 453 ~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lkl--k~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaar 530 (731)
T KOG0339|consen 453 KKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKL--KGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAAR 530 (731)
T ss_pred HHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhcc--ccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhc
Confidence 466655544433 3367999999999999999999975 49999999999999999999999999 7999999999999
Q ss_pred ccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHH
Q 004567 375 GLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLRE 430 (744)
Q Consensus 375 GlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~ 430 (744)
|+|| |.+..||+||.-.++++|.||+||+||+|..|.++.++++.+..+.-.|.+
T Consensus 531 gldI-~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVn 585 (731)
T KOG0339|consen 531 GLDI-PSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVN 585 (731)
T ss_pred CCCc-cccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHH
Confidence 9999 899999999999999999999999999999999999999999877666644
No 28
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=9.2e-54 Score=477.43 Aligned_cols=364 Identities=29% Similarity=0.500 Sum_probs=316.9
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEE
Q 004567 65 STRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIII 144 (744)
Q Consensus 65 ~~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl 144 (744)
..+|+++++++.+.++|.+.||..|||+|.+||+.++.|+|++++||||||||++|++|++..+... ..+.++|||
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~----~~~~~~lil 102 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD----LNACQALIL 102 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC----CCCceEEEE
Confidence 5679999999999999999999999999999999999999999999999999999999999887321 246789999
Q ss_pred cCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchh
Q 004567 145 SPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADR 224 (744)
Q Consensus 145 ~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~ 224 (744)
+||++|+.|+.+.+..++....+.+..++|+............+++|+|+||++|.+++... .+.+.++++|||||||+
T Consensus 103 ~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~-~~~l~~i~lvViDEah~ 181 (401)
T PTZ00424 103 APTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKR-HLRVDDLKLFILDEADE 181 (401)
T ss_pred CCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhC-CcccccccEEEEecHHH
Confidence 99999999999999999988888888888844333333333456899999999999988765 45689999999999999
Q ss_pred hhccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcCh-hhHHHHHH
Q 004567 225 ILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPL-EQKLDMLW 303 (744)
Q Consensus 225 lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~-~~kl~~L~ 303 (744)
+++.+|...+..++..++...|++++|||+++.+..+...++.+|..+.+.... .....+.+.+..++. ..+...+.
T Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~ 259 (401)
T PTZ00424 182 MLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDE--LTLEGIRQFYVAVEKEEWKFDTLC 259 (401)
T ss_pred HHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCC--cccCCceEEEEecChHHHHHHHHH
Confidence 999999999999999999999999999999999998888888888766554332 234556667766664 44677778
Q ss_pred HHHHHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCC
Q 004567 304 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAV 382 (744)
Q Consensus 304 ~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V 382 (744)
.++......++||||+|+..++.+++.|... ++.+..+||+|++.+|..+++.|++ ...|||||+++++|||| |+|
T Consensus 260 ~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~--~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDi-p~v 336 (401)
T PTZ00424 260 DLYETLTITQAIIYCNTRRKVDYLTKKMHER--DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDV-QQV 336 (401)
T ss_pred HHHHhcCCCeEEEEecCcHHHHHHHHHHHHC--CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCc-ccC
Confidence 8877766789999999999999999999875 8899999999999999999999999 99999999999999999 999
Q ss_pred cEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHHc-CCCcccc
Q 004567 383 DWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFT 438 (744)
Q Consensus 383 ~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~~-~i~i~~~ 438 (744)
++||++|+|.+...|+||+||+||.|+.|.|++|+++.+...+..+++. +..++..
T Consensus 337 ~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~ 393 (401)
T PTZ00424 337 SLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEM 393 (401)
T ss_pred CEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCccccc
Confidence 9999999999999999999999999999999999999999888888765 5544443
No 29
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-54 Score=458.94 Aligned_cols=362 Identities=30% Similarity=0.478 Sum_probs=316.0
Q ss_pred CCCCCCCCCCCHHHHHH----------HHHCCCCCCcHHHHHHHHHHHc---------CCCEEEEccCCCchhHHhHHHH
Q 004567 64 GSTRFDQLPISKKTKSG----------LKDAGFVKMTDIQRASLPHSLC---------GRDILGAAKTGSGKTLAFVIPV 124 (744)
Q Consensus 64 ~~~~F~~l~ls~~~~~~----------L~~~gf~~~t~iQ~~aip~il~---------g~dvlv~a~TGSGKTla~llpi 124 (744)
....|+.++++...... |.++++..+.|+|...+|+++. ++|+++.||||||||+||.+||
T Consensus 125 slq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPI 204 (620)
T KOG0350|consen 125 SLQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPI 204 (620)
T ss_pred ceeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHH
Confidence 34458888877665444 8999999999999999999963 5899999999999999999999
Q ss_pred HHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhcC------CCcEEEEChHH
Q 004567 125 LEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN------ELNILVCTPGR 198 (744)
Q Consensus 125 l~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~------~~~IlV~TPgr 198 (744)
++.|..+. .+..++|||+||++|+.|++++|.+++...++.++.+.| ..+...+...+. ..+|+|+||||
T Consensus 205 VQ~L~~R~---v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sg-q~sl~~E~~qL~~~~~~~~~DIlVaTPGR 280 (620)
T KOG0350|consen 205 VQLLSSRP---VKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSG-QNSLEDEARQLASDPPECRIDILVATPGR 280 (620)
T ss_pred HHHHccCC---ccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEeccc-ccchHHHHHHHhcCCCccccceEEcCchH
Confidence 99997653 345899999999999999999999999999999999998 778877777664 24999999999
Q ss_pred HHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHhCC----------------------------------CC
Q 004567 199 LLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP----------------------------------KH 244 (744)
Q Consensus 199 Ll~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp----------------------------------~~ 244 (744)
|.+|+.+...|++.+|+++||||||||++..|...+..++..+. +.
T Consensus 281 LVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~ 360 (620)
T KOG0350|consen 281 LVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPP 360 (620)
T ss_pred HHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCch
Confidence 99999999999999999999999999999988877766655432 12
Q ss_pred CcEEEEeeccChhHHHHHHHhcCCCccccccc--cccccCccccceeEEEcChhhHHHHHHHHHHHhCCCcEEEEecchH
Q 004567 245 RQTFLFSATQTKSVQDLARLSLKDPQYLSVHE--ESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCK 322 (744)
Q Consensus 245 ~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~--~~~~~~~~~l~q~~~~~~~~~kl~~L~~lLk~~~~~k~IVF~~s~~ 322 (744)
.+.++||||++.....+..+.+..|....+.. ......|..+.++++++....+.-.++.+|......++|+|+++..
T Consensus 361 l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~ 440 (620)
T KOG0350|consen 361 LWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVS 440 (620)
T ss_pred hHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchH
Confidence 35788999999999999999999998777664 3446788999999999999899999999999998999999999999
Q ss_pred HHHHHHHHHHhhC--CCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCcEEEEcCCCCCHhHHHH
Q 004567 323 QVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIH 399 (744)
Q Consensus 323 ~v~~l~~~L~~l~--~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQ 399 (744)
++.+++..|.-.+ +.+.+-++.|.++...|...++.|.. +..+|||||+++||+|+ .+|++||+||+|.+..+|+|
T Consensus 441 sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv-~~v~~VINYd~P~~~ktyVH 519 (620)
T KOG0350|consen 441 SANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDV-NDVDNVINYDPPASDKTYVH 519 (620)
T ss_pred HHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcc-cccceEeecCCCchhhHHHH
Confidence 9999999987322 35677889999999999999999999 99999999999999999 89999999999999999999
Q ss_pred HhhccCcCCCCCeEEEEeCcchHHHHHHHHH
Q 004567 400 RVGRTARYNSGGRSVLFLTPTEMKMLEKLRE 430 (744)
Q Consensus 400 RiGRagR~g~~G~~il~l~~~e~~~l~~l~~ 430 (744)
|+|||||+|+.|.|+.++...+...+..+.+
T Consensus 520 R~GRTARAgq~G~a~tll~~~~~r~F~klL~ 550 (620)
T KOG0350|consen 520 RAGRTARAGQDGYAITLLDKHEKRLFSKLLK 550 (620)
T ss_pred hhcccccccCCceEEEeeccccchHHHHHHH
Confidence 9999999999999999999988854444433
No 30
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.6e-54 Score=442.78 Aligned_cols=362 Identities=27% Similarity=0.459 Sum_probs=321.5
Q ss_pred CCcCCcCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CCEEEEccCCCchhHHhHHHHHHHHHhccCCC
Q 004567 58 SFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCG--RDILGAAKTGSGKTLAFVIPVLEKLYKERWGP 135 (744)
Q Consensus 58 ~~~~~~~~~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g--~dvlv~a~TGSGKTla~llpil~~L~~~~~~~ 135 (744)
+.+|+.+..+|++|+|+|+++++|..|+|..|+.||..|+|+++.. +|+|.++..|+|||.||.+.||.++-..
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~---- 157 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD---- 157 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc----
Confidence 4677888999999999999999999999999999999999999986 8899999999999999999999886333
Q ss_pred CCCceEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCce
Q 004567 136 EDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQ 215 (744)
Q Consensus 136 ~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~ 215 (744)
..-+++++|+|||+||.|+.+++.+.|++.++.+...+.+.. . ..-..-..+|+|+|||.+++++..-..+.+..++
T Consensus 158 ~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk-~--~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kik 234 (477)
T KOG0332|consen 158 VVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSK-A--KRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIK 234 (477)
T ss_pred ccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcc-c--ccCCcchhheeeCCCccHHHHHHHHHhhChhhce
Confidence 335779999999999999999999999998888887776331 1 1111113589999999999999886678889999
Q ss_pred EEEEcCchhhhc-cchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcC
Q 004567 216 ILILDEADRILD-VGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP 294 (744)
Q Consensus 216 ~lVlDEAh~lld-~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~ 294 (744)
++|+||||.|++ .||++.-..|...+|++.|.++||||+...+..++...+.++..+.+..+.. ....+.|+|+.|+
T Consensus 235 vfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel--~L~~IkQlyv~C~ 312 (477)
T KOG0332|consen 235 VFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREEL--ALDNIKQLYVLCA 312 (477)
T ss_pred EEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhc--cccchhhheeecc
Confidence 999999999887 5799999999999999999999999999999999999999999888876653 5577899999998
Q ss_pred hh-hHHHHHHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEcccc
Q 004567 295 LE-QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA 372 (744)
Q Consensus 295 ~~-~kl~~L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~ 372 (744)
.. .|++.|..+.....-+..||||.|++.+..++..+... |..+.++||.|+-.+|..++..|+. ...|||+|+++
T Consensus 313 ~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~--Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ 390 (477)
T KOG0332|consen 313 CRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAE--GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVC 390 (477)
T ss_pred chhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhc--CceeEEeeccchhHHHHHHHHHHhcCcceEEEEechh
Confidence 64 58888888766666789999999999999999999986 9999999999999999999999999 89999999999
Q ss_pred ccccccCCCCcEEEEcCCCC------CHhHHHHHhhccCcCCCCCeEEEEeCcchH-HHHHHHHHc
Q 004567 373 SRGLDFNKAVDWVVQVDCPE------DVASYIHRVGRTARYNSGGRSVLFLTPTEM-KMLEKLREA 431 (744)
Q Consensus 373 arGlDi~p~V~~VI~~d~P~------s~~~yiQRiGRagR~g~~G~~il~l~~~e~-~~l~~l~~~ 431 (744)
+||||+ +.|+.|||||+|. ++++|+||+|||||+|+.|.++.|+...+. .+++.|+++
T Consensus 391 ARGiDv-~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~ 455 (477)
T KOG0332|consen 391 ARGIDV-AQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKH 455 (477)
T ss_pred hccccc-ceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHH
Confidence 999999 8999999999995 789999999999999999999999987654 778788775
No 31
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-53 Score=490.41 Aligned_cols=363 Identities=32% Similarity=0.499 Sum_probs=326.6
Q ss_pred CcCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhcc-CCCCCCce
Q 004567 62 YVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKER-WGPEDGVG 140 (744)
Q Consensus 62 ~~~~~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~-~~~~~g~~ 140 (744)
..++.+|...|++..++..|+++||..|||||.+|||+++.|+|||++|.||||||++|++|++.++...+ ....+|+-
T Consensus 361 pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi 440 (997)
T KOG0334|consen 361 PKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPI 440 (997)
T ss_pred CcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCce
Confidence 45678899999999999999999999999999999999999999999999999999999999997765443 33456999
Q ss_pred EEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhc-CCCcEEEEChHHHHHHHhcC--CCCCCCCceEE
Q 004567 141 SIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV-NELNILVCTPGRLLQHMDET--PNFDCSQLQIL 217 (744)
Q Consensus 141 aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~-~~~~IlV~TPgrLl~~l~~~--~~~~~~~l~~l 217 (744)
+||++|||+||.||++.++.|+...++.+.+++| +.........+ +++.|+|||||++++.+..+ +..++.++.++
T Consensus 441 ~li~aPtrela~QI~r~~~kf~k~l~ir~v~vyg-g~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~l 519 (997)
T KOG0334|consen 441 ALILAPTRELAMQIHREVRKFLKLLGIRVVCVYG-GSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYL 519 (997)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecC-CccHHHHHHHHhcCCceEEeccchhhhhHhhcCCcccccccccee
Confidence 9999999999999999999999999999999999 66665555544 57999999999999988665 33456677799
Q ss_pred EEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcC-hh
Q 004567 218 ILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP-LE 296 (744)
Q Consensus 218 VlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~-~~ 296 (744)
|+||||+|+++||.+++..|+.++++.+|+++||||+|..+..+++..+..|..+.+.... .....+.|.+.+++ ..
T Consensus 520 v~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~s--vV~k~V~q~v~V~~~e~ 597 (997)
T KOG0334|consen 520 VLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRS--VVCKEVTQVVRVCAIEN 597 (997)
T ss_pred eechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccce--eEeccceEEEEEecCch
Confidence 9999999999999999999999999999999999999999999999999988887776443 45677889999999 88
Q ss_pred hHHHHHHHHHHHhC-CCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEcccccc
Q 004567 297 QKLDMLWSFIKAHL-NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASR 374 (744)
Q Consensus 297 ~kl~~L~~lLk~~~-~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~ar 374 (744)
.|+..|..+|.... ..++||||.++..|..+.+.|.+. |+++..+||+.++.+|..+++.|++ ...+||||++++|
T Consensus 598 eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~a--g~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvar 675 (997)
T KOG0334|consen 598 EKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKA--GYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVAR 675 (997)
T ss_pred HHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhc--CcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhc
Confidence 89999999997644 789999999999999999999875 9999999999999999999999999 9999999999999
Q ss_pred ccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHH
Q 004567 375 GLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLRE 430 (744)
Q Consensus 375 GlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~ 430 (744)
|||+ +.+..|||||+|.....|+||+|||||+|+.|.|++|++|.+..+...|..
T Consensus 676 GLdv-~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~ 730 (997)
T KOG0334|consen 676 GLDV-KELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCK 730 (997)
T ss_pred cccc-ccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHH
Confidence 9999 899999999999999999999999999999999999999976666555544
No 32
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-53 Score=445.11 Aligned_cols=429 Identities=32% Similarity=0.487 Sum_probs=360.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEE
Q 004567 64 GSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSII 143 (744)
Q Consensus 64 ~~~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLI 143 (744)
....|..++|+..+++++.+.||..|||||+..||.+|.|+|++..|.||||||.||++|+++.|.... ..|.+++|
T Consensus 19 g~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s---~~g~Rali 95 (529)
T KOG0337|consen 19 GSGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS---QTGLRALI 95 (529)
T ss_pred CCCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc---ccccceee
Confidence 356799999999999999999999999999999999999999999999999999999999999997653 56899999
Q ss_pred EcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhc-CCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCc
Q 004567 144 ISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV-NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEA 222 (744)
Q Consensus 144 l~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~-~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEA 222 (744)
++|||+|+.|+..+++.+++..++.+.+++| +......-..+ .+++|||+|||+++...-.. .+.++.+.+||+|||
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~g-gD~~eeqf~~l~~npDii~ATpgr~~h~~vem-~l~l~sveyVVfdEa 173 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVG-GDSIEEQFILLNENPDIIIATPGRLLHLGVEM-TLTLSSVEYVVFDEA 173 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcc-cchHHHHHHHhccCCCEEEecCceeeeeehhe-eccccceeeeeehhh
Confidence 9999999999999999999999999999999 55554444444 58999999999998665544 578899999999999
Q ss_pred hhhhccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhHHHHH
Q 004567 223 DRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDML 302 (744)
Q Consensus 223 h~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl~~L 302 (744)
|+|..|||..++..++..+|..+|+++||||+|..+.++++.++.+|..+.+..+. .....++..+..+....|...|
T Consensus 174 drlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvet--kise~lk~~f~~~~~a~K~aaL 251 (529)
T KOG0337|consen 174 DRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVET--KISELLKVRFFRVRKAEKEAAL 251 (529)
T ss_pred hHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhh--hcchhhhhheeeeccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999866554 4567788899999999999999
Q ss_pred HHHHHHhC-CCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCC
Q 004567 303 WSFIKAHL-NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNK 380 (744)
Q Consensus 303 ~~lLk~~~-~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p 380 (744)
+.++.... ...++|||.|...|+++...|+.. |+.+..++|.|.+..|..-+..|.. ...+||.||+++||+|| |
T Consensus 252 l~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~--g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~di-p 328 (529)
T KOG0337|consen 252 LSILGGRIKDKQTIVFVATKHHVEYVRGLLRDF--GGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDI-P 328 (529)
T ss_pred HHHHhccccccceeEEecccchHHHHHHHHHhc--CCCccccccccChHhhhhccccccCCccceEEEehhhhccCCC-c
Confidence 99998764 457999999999999999999986 8999999999999999999999999 99999999999999999 9
Q ss_pred CCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHHc-CCCcccc----ccc-----------ccc
Q 004567 381 AVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFT----KAN-----------TKR 444 (744)
Q Consensus 381 ~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~~-~i~i~~~----~~~-----------~~~ 444 (744)
..+.||+||.|.+...|+||+||++|+|+.|.++.++.+.+..++-.|... +-++... .++ +..
T Consensus 329 lldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~~~~~~e~d~~~t~vigr~P~~~ 408 (529)
T KOG0337|consen 329 LLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIFAISHFEYDCDDTTVIGRSPQSL 408 (529)
T ss_pred cccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCceeeccchhhhccccceeeccCcHHH
Confidence 999999999999999999999999999999999999999999888777655 3222111 111 011
Q ss_pred cccHHHHHHHHHhcChhHHH---HHHHHHHHHHHHhccCCCcccccccCCCHHHHHHhcCCCCCCC
Q 004567 445 LQPVSGLLAALLVKYPDMQH---RAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPK 507 (744)
Q Consensus 445 ~~~i~~~l~~~~~~~~~l~~---~a~~af~sy~rs~~~~~~~~if~~~~l~~~~~a~s~gl~~~p~ 507 (744)
..-+....++++..+.++.. .|-+|+.-|.++........+-..+++ -.+=||...+.
T Consensus 409 v~~~~~~~q~~~~~~~el~~l~~~a~ka~~~y~rtr~~~s~es~kR~ke~-----~~~~g~~~~~~ 469 (529)
T KOG0337|consen 409 VSLESEGHQSILESNRELQVLARTADKAEMLYTRTRPSPSPESLKRAKEM-----ISSKGLHPRFK 469 (529)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHhh-----hcccCCCcccc
Confidence 11233445666666666554 455677888887655544433333333 23335554443
No 33
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=7.2e-53 Score=457.68 Aligned_cols=349 Identities=28% Similarity=0.471 Sum_probs=320.8
Q ss_pred cCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEE
Q 004567 63 VGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSI 142 (744)
Q Consensus 63 ~~~~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aL 142 (744)
.....|+.+-|...++.+|+..+|..||+||..|||+++++-|+|++|..|+|||++|.+.+++.|..+ ....+++
T Consensus 22 ~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~----~~~~q~~ 97 (980)
T KOG4284|consen 22 NCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR----SSHIQKV 97 (980)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc----cCcceeE
Confidence 455679999999999999999999999999999999999999999999999999999999999988544 4568899
Q ss_pred EEcCChHHHHHHHHHHHHhhcc-CCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcC
Q 004567 143 IISPTRELADQLFDVLKAVGKH-HNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDE 221 (744)
Q Consensus 143 Il~PtreLa~Qi~~~l~~~~~~-~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDE 221 (744)
||+||||+|.||.+++..++.. .++.|..++| |+.......+++.++|+||||||+++++... .|+++.++++||||
T Consensus 98 Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIG-GT~~~~d~~rlk~~rIvIGtPGRi~qL~el~-~~n~s~vrlfVLDE 175 (980)
T KOG4284|consen 98 IVTPTREIAVQIKETVRKVAPSFTGARCSVFIG-GTAHKLDLIRLKQTRIVIGTPGRIAQLVELG-AMNMSHVRLFVLDE 175 (980)
T ss_pred EEecchhhhhHHHHHHHHhcccccCcceEEEec-CchhhhhhhhhhhceEEecCchHHHHHHHhc-CCCccceeEEEecc
Confidence 9999999999999999999964 5899999999 8899999999999999999999999888766 89999999999999
Q ss_pred chhhhcc-chHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChh----
Q 004567 222 ADRILDV-GFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLE---- 296 (744)
Q Consensus 222 Ah~lld~-gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~---- 296 (744)
||.+++. .|..+++.|++.+|..+|++.||||.|..+..+...++.+|..+.....+. ..-.+.|+|...+..
T Consensus 176 ADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~--~L~GikQyv~~~~s~nnsv 253 (980)
T KOG4284|consen 176 ADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDV--QLFGIKQYVVAKCSPNNSV 253 (980)
T ss_pred HHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCc--eeechhheeeeccCCcchH
Confidence 9999995 599999999999999999999999999999999999999999998776553 345677887776643
Q ss_pred ----hHHHHHHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccc
Q 004567 297 ----QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 371 (744)
Q Consensus 297 ----~kl~~L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv 371 (744)
.|+..|-.+++..+....||||+....|+-++..|..- |+.+.++.|.|.|.+|..++..++. ..+|||+||.
T Consensus 254 eemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ss--G~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDL 331 (980)
T KOG4284|consen 254 EEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSS--GLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDL 331 (980)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhcc--CCCeEEeccccchhHHHHHHHHhhhceEEEEEecch
Confidence 47788888888888889999999999999999999874 9999999999999999999999999 9999999999
Q ss_pred cccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchH
Q 004567 372 ASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 422 (744)
Q Consensus 372 ~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~ 422 (744)
.+||||- +.|++|||.|.|.+..+|.||||||||+|..|.++.|+.....
T Consensus 332 taRGIDa-~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 332 TARGIDA-DNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred hhccCCc-cccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 9999999 9999999999999999999999999999999999999987655
No 34
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-52 Score=437.47 Aligned_cols=366 Identities=28% Similarity=0.509 Sum_probs=334.6
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEE
Q 004567 65 STRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIII 144 (744)
Q Consensus 65 ~~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl 144 (744)
..+|++++|++.+++++...||.+|+.||+.||+++..|.|+++++++|+|||.+|.+++++.+-.. .....||++
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~----~ke~qalil 100 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS----VKETQALIL 100 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc----hHHHHHHHh
Confidence 4579999999999999999999999999999999999999999999999999999999999987322 345779999
Q ss_pred cCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHH-hcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCch
Q 004567 145 SPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKE-HVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEAD 223 (744)
Q Consensus 145 ~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~-~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh 223 (744)
+|||+||.|++.+...++..++.++..++||......... ....++|+|+|||++++.+... .+....++++|+||||
T Consensus 101 aPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlDEaD 179 (397)
T KOG0327|consen 101 APTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLDEAD 179 (397)
T ss_pred cchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc-cccccceeEEeecchH
Confidence 9999999999999999999999999989984444323333 3346899999999999988877 7778899999999999
Q ss_pred hhhccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhHHHHHH
Q 004567 224 RILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLW 303 (744)
Q Consensus 224 ~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl~~L~ 303 (744)
.++..||...+..|+.++|.+.|++++|||+|.++..+.+.++.+|..+.+.... .+...+.|+|+.+..+.|++.|.
T Consensus 180 EmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~--ltl~gikq~~i~v~k~~k~~~l~ 257 (397)
T KOG0327|consen 180 EMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDE--LTLEGIKQFYINVEKEEKLDTLC 257 (397)
T ss_pred hhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchh--hhhhheeeeeeeccccccccHHH
Confidence 9999999999999999999999999999999999999999999999999987766 45788899999999999999999
Q ss_pred HHHHHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCC
Q 004567 304 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAV 382 (744)
Q Consensus 304 ~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V 382 (744)
.+.. .-...+|||||+..+..+...|.. .++.+..+||.|.+.+|..++..|+. ..+|||+|+.++||+|+ ..+
T Consensus 258 dl~~--~~~q~~if~nt~r~v~~l~~~L~~--~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv-~~~ 332 (397)
T KOG0327|consen 258 DLYR--RVTQAVIFCNTRRKVDNLTDKLRA--HGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDV-QQV 332 (397)
T ss_pred HHHH--hhhcceEEecchhhHHHHHHHHhh--CCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccch-hhc
Confidence 9998 368899999999999999999965 48999999999999999999999999 89999999999999999 899
Q ss_pred cEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHHc-CCCcccccccc
Q 004567 383 DWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTKANT 442 (744)
Q Consensus 383 ~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~~-~i~i~~~~~~~ 442 (744)
..||+|+.|....+|+||+||+||+|++|.++.|++..+...++.+++. +.++++++.+.
T Consensus 333 slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~ 393 (397)
T KOG0327|consen 333 SLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNF 393 (397)
T ss_pred ceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccch
Confidence 9999999999999999999999999999999999999999999999886 88888776543
No 35
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.3e-49 Score=470.96 Aligned_cols=372 Identities=18% Similarity=0.238 Sum_probs=286.6
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHH
Q 004567 72 PISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELA 151 (744)
Q Consensus 72 ~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa 151 (744)
.+++.+.++|+++||..||++|.++||.++.|+|+++++|||||||+||++|+++.+... .+.++|||+||++||
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~-----~~~~aL~l~PtraLa 94 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD-----PRATALYLAPTKALA 94 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC-----CCcEEEEEcChHHHH
Confidence 389999999999999999999999999999999999999999999999999999998653 367899999999999
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcC-C--CCCCCCceEEEEcCchhhhcc
Q 004567 152 DQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDET-P--NFDCSQLQILILDEADRILDV 228 (744)
Q Consensus 152 ~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~-~--~~~~~~l~~lVlDEAh~lld~ 228 (744)
.|++..++.++ ..++.+..+.| ............+++|+|+||++|...+... . ...++++++|||||||++.+.
T Consensus 95 ~q~~~~l~~l~-~~~i~v~~~~G-dt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~ 172 (742)
T TIGR03817 95 ADQLRAVRELT-LRGVRPATYDG-DTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGV 172 (742)
T ss_pred HHHHHHHHHhc-cCCeEEEEEeC-CCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCc
Confidence 99999999987 44677777777 5555444444567999999999986543221 1 112689999999999999763
Q ss_pred chHHHHHHHH-------HhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcC-------
Q 004567 229 GFKKALNAIV-------SQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP------- 294 (744)
Q Consensus 229 gf~~~l~~Il-------~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~------- 294 (744)
|+..+..++ ...+..+|+++||||+++... ++...+..|..+ +.... .+....+.+...+
T Consensus 173 -fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~---~~~~~~~~~~~~p~~~~~~~ 246 (742)
T TIGR03817 173 -FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDG---SPRGARTVALWEPPLTELTG 246 (742)
T ss_pred -cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCC---CCcCceEEEEecCCcccccc
Confidence 666554444 345677899999999998865 455556666433 22211 1111112222111
Q ss_pred ----------hhhHHHHHHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhCC------CCcEEEeeCCCCHHHHHHHHHH
Q 004567 295 ----------LEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRP------GIPLMCLYGRMKQDRRMAIYAQ 358 (744)
Q Consensus 295 ----------~~~kl~~L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~------g~~v~~lhg~~~~~~R~~i~~~ 358 (744)
...+...+..++.. +.++||||+|++.|+.++..|+.... +..+..+||++++.+|..+++.
T Consensus 247 ~~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~ 324 (742)
T TIGR03817 247 ENGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERA 324 (742)
T ss_pred ccccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHH
Confidence 12355566666664 58999999999999999999876421 4578899999999999999999
Q ss_pred Hhc-cCCeEEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeC--cchHHHHHHHHHc-CCC
Q 004567 359 FCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT--PTEMKMLEKLREA-KIP 434 (744)
Q Consensus 359 F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~--~~e~~~l~~l~~~-~i~ 434 (744)
|++ ...+||||+++++|||| |+|++||+||.|.+..+|+||+|||||.|+.|.++++.. +.+..++...+.. +.+
T Consensus 325 f~~G~i~vLVaTd~lerGIDI-~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~ 403 (742)
T TIGR03817 325 LRDGELLGVATTNALELGVDI-SGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRP 403 (742)
T ss_pred HHcCCceEEEECchHhccCCc-ccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCC
Confidence 999 89999999999999999 999999999999999999999999999999999999987 4455556655433 556
Q ss_pred cccccccccccccHHHHHHHHHhcC
Q 004567 435 IHFTKANTKRLQPVSGLLAALLVKY 459 (744)
Q Consensus 435 i~~~~~~~~~~~~i~~~l~~~~~~~ 459 (744)
++...+++....-+..++...+.+.
T Consensus 404 ~e~~~~~~~n~~il~~hl~~aa~e~ 428 (742)
T TIGR03817 404 VEATVFDPDNPYVLGPHLCCAAAEL 428 (742)
T ss_pred CccceeCCCcHHHHHHHHHHHHhcC
Confidence 6665555544444556666555544
No 36
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.4e-46 Score=442.89 Aligned_cols=340 Identities=21% Similarity=0.297 Sum_probs=265.4
Q ss_pred CCC--CCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEE
Q 004567 67 RFD--QLPISKKTKSGLKD-AGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSII 143 (744)
Q Consensus 67 ~F~--~l~ls~~~~~~L~~-~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLI 143 (744)
.|. .+|.+..+...++. +||..++|+|.++|+.++.|+|+|+.+|||+|||+||++|++.. +..+||
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~----------~GiTLV 505 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC----------PGITLV 505 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc----------CCcEEE
Confidence 455 46777778777765 79999999999999999999999999999999999999999853 345999
Q ss_pred EcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhc-------CCCcEEEEChHHHHH--HHhcC-CCC-CCC
Q 004567 144 ISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV-------NELNILVCTPGRLLQ--HMDET-PNF-DCS 212 (744)
Q Consensus 144 l~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~-------~~~~IlV~TPgrLl~--~l~~~-~~~-~~~ 212 (744)
|+|+++|+.++...+.. .++.+..+.+ +.........+ +.++|||+||++|.. .+... ..+ ...
T Consensus 506 ISPLiSLmqDQV~~L~~----~GI~Aa~L~s-~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~ 580 (1195)
T PLN03137 506 ISPLVSLIQDQIMNLLQ----ANIPAASLSA-GMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRG 580 (1195)
T ss_pred EeCHHHHHHHHHHHHHh----CCCeEEEEEC-CCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcc
Confidence 99999999866555554 3578888887 44433322211 568999999999853 11111 111 134
Q ss_pred CceEEEEcCchhhhccc--hHHHHHHH--HHhCCCCCcEEEEeeccChhHHHHHHHhcC--CCccccccccccccCcccc
Q 004567 213 QLQILILDEADRILDVG--FKKALNAI--VSQLPKHRQTFLFSATQTKSVQDLARLSLK--DPQYLSVHEESVTATPNRL 286 (744)
Q Consensus 213 ~l~~lVlDEAh~lld~g--f~~~l~~I--l~~lp~~~q~ll~SAT~~~~v~~la~~~l~--~p~~i~v~~~~~~~~~~~l 286 (744)
.+.+|||||||++++|| |...+..+ +....+.+++++||||++..+...+...+. ++..+.. . ..+.
T Consensus 581 ~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~---S----f~Rp 653 (1195)
T PLN03137 581 LLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ---S----FNRP 653 (1195)
T ss_pred ccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec---c----cCcc
Confidence 58899999999999998 77766653 333334688999999999988774443333 3322211 1 1112
Q ss_pred ceeEEEcChhhH-HHHHHHHHHHh-CCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cC
Q 004567 287 QQTAMIVPLEQK-LDMLWSFIKAH-LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KR 363 (744)
Q Consensus 287 ~q~~~~~~~~~k-l~~L~~lLk~~-~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~ 363 (744)
...|.+++...+ +..+..++... ....+||||.|++.|+.++..|... |+.+..+||+|++.+|..+++.|.. ..
T Consensus 654 NL~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~--Gika~~YHAGLs~eeR~~vqe~F~~Gei 731 (1195)
T PLN03137 654 NLWYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEF--GHKAAFYHGSMDPAQRAFVQKQWSKDEI 731 (1195)
T ss_pred ceEEEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHC--CCCeeeeeCCCCHHHHHHHHHHHhcCCC
Confidence 234444444333 45677777654 3678999999999999999999875 9999999999999999999999999 89
Q ss_pred CeEEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHHc
Q 004567 364 SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA 431 (744)
Q Consensus 364 ~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~~ 431 (744)
.|||||+++++|||+ |+|++||||++|.+++.|+||+|||||.|..|.|++|+.+.+...+..+...
T Consensus 732 ~VLVATdAFGMGIDk-PDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~~ 798 (1195)
T PLN03137 732 NIICATVAFGMGINK-PDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQ 798 (1195)
T ss_pred cEEEEechhhcCCCc-cCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHhc
Confidence 999999999999999 9999999999999999999999999999999999999999888777777654
No 37
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-47 Score=418.36 Aligned_cols=367 Identities=30% Similarity=0.434 Sum_probs=312.4
Q ss_pred cCCcCCCCCCCC----CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccC-C
Q 004567 60 SKYVGSTRFDQL----PISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERW-G 134 (744)
Q Consensus 60 ~~~~~~~~F~~l----~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~-~ 134 (744)
.......+|.+| ..++.++..|...||..|||+|.+|||.++.++|++.|||||||||++|++|++.+|..... .
T Consensus 126 ~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~ 205 (593)
T KOG0344|consen 126 HLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEK 205 (593)
T ss_pred CCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhccc
Confidence 334456667774 58899999999999999999999999999999999999999999999999999999866432 2
Q ss_pred CCCCceEEEEcCChHHHHHHHHHHHHhh--ccCCceEEEEEcCccChHHH-HHhcCCCcEEEEChHHHHHHHhcCC-CCC
Q 004567 135 PEDGVGSIIISPTRELADQLFDVLKAVG--KHHNFSAGLLIGGRRDVDME-KEHVNELNILVCTPGRLLQHMDETP-NFD 210 (744)
Q Consensus 135 ~~~g~~aLIl~PtreLa~Qi~~~l~~~~--~~~~~~~~~l~Gg~~~~~~e-~~~~~~~~IlV~TPgrLl~~l~~~~-~~~ 210 (744)
...|.+++|+.|||+||.|++..+.++. ...++.+..+.......... ......++|+|+||-++..++...+ .++
T Consensus 206 ~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~id 285 (593)
T KOG0344|consen 206 HKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNID 285 (593)
T ss_pred CccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccch
Confidence 3568999999999999999999999998 55555555554422222111 1112358999999999999998753 467
Q ss_pred CCCceEEEEcCchhhhcc-chHHHHHHHHHhCCC-CCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccce
Q 004567 211 CSQLQILILDEADRILDV-GFKKALNAIVSQLPK-HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQ 288 (744)
Q Consensus 211 ~~~l~~lVlDEAh~lld~-gf~~~l~~Il~~lp~-~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q 288 (744)
++.+.++|+||||++++. +|..++..|+..+.. ...+-+||||++..+..++...+.++..+.+...... ...+.|
T Consensus 286 l~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa--~~~V~Q 363 (593)
T KOG0344|consen 286 LSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSA--NETVDQ 363 (593)
T ss_pred hheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhH--hhhhhh
Confidence 899999999999999998 999999999988754 4567799999999999999999999988877665432 344555
Q ss_pred eEEE-cChhhHHHHHHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeE
Q 004567 289 TAMI-VPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVL 366 (744)
Q Consensus 289 ~~~~-~~~~~kl~~L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VL 366 (744)
..+. .....|+-++..++......++|||+.+.+.|..++..|. .++++.+..+||..++.+|..++++|+. ...||
T Consensus 364 elvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~-~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvL 442 (593)
T KOG0344|consen 364 ELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELE-IYDNINVDVIHGERSQKQRDETMERFRIGKIWVL 442 (593)
T ss_pred hheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhh-hccCcceeeEecccchhHHHHHHHHHhccCeeEE
Confidence 5444 4456789999999999999999999999999999999997 5689999999999999999999999999 99999
Q ss_pred EEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHH
Q 004567 367 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLRE 430 (744)
Q Consensus 367 VaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~ 430 (744)
|||++++||+|| .+|++||+||.|.+...|+||+||+||+|+.|.++.|++..+..+++.+.+
T Consensus 443 icTdll~RGiDf-~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae 505 (593)
T KOG0344|consen 443 ICTDLLARGIDF-KGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAE 505 (593)
T ss_pred Eehhhhhccccc-cCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHH
Confidence 999999999999 999999999999999999999999999999999999999988877776644
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2e-46 Score=425.99 Aligned_cols=322 Identities=22% Similarity=0.318 Sum_probs=254.6
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhh
Q 004567 83 DAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162 (744)
Q Consensus 83 ~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~ 162 (744)
.+||..|+|+|.++|+.++.|+|+++++|||||||++|++|++.. +..+|||+||++|+.|++..+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~----------~~~~lVi~P~~~L~~dq~~~l~~~- 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS----------DGITLVISPLISLMEDQVLQLKAS- 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc----------CCcEEEEecHHHHHHHHHHHHHHc-
Confidence 479999999999999999999999999999999999999999742 346899999999999999988765
Q ss_pred ccCCceEEEEEcCccChHHH-----HHhcCCCcEEEEChHHHHHHHhcCCCC-CCCCceEEEEcCchhhhccc--hHHHH
Q 004567 163 KHHNFSAGLLIGGRRDVDME-----KEHVNELNILVCTPGRLLQHMDETPNF-DCSQLQILILDEADRILDVG--FKKAL 234 (744)
Q Consensus 163 ~~~~~~~~~l~Gg~~~~~~e-----~~~~~~~~IlV~TPgrLl~~l~~~~~~-~~~~l~~lVlDEAh~lld~g--f~~~l 234 (744)
++.+..+.+ ....... ....+.++|+|+||+++.........+ ...++.+|||||||++++|| |...+
T Consensus 75 ---gi~~~~l~~-~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~ 150 (470)
T TIGR00614 75 ---GIPATFLNS-SQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDY 150 (470)
T ss_pred ---CCcEEEEeC-CCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHH
Confidence 466766666 3333211 112346899999999975432111112 35789999999999999987 56655
Q ss_pred HH---HHHhCCCCCcEEEEeeccChhHHHHHHH--hcCCCccccccccccccCccccceeEEEcChh-hHHHHHHHHHH-
Q 004567 235 NA---IVSQLPKHRQTFLFSATQTKSVQDLARL--SLKDPQYLSVHEESVTATPNRLQQTAMIVPLE-QKLDMLWSFIK- 307 (744)
Q Consensus 235 ~~---Il~~lp~~~q~ll~SAT~~~~v~~la~~--~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~-~kl~~L~~lLk- 307 (744)
.. +...+| ..++++||||+++.+...... .+.+|..+..... ..++ .|.+.... ..+..+..++.
T Consensus 151 ~~l~~l~~~~~-~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~-----r~nl--~~~v~~~~~~~~~~l~~~l~~ 222 (470)
T TIGR00614 151 KALGSLKQKFP-NVPIMALTATASPSVREDILRQLNLKNPQIFCTSFD-----RPNL--YYEVRRKTPKILEDLLRFIRK 222 (470)
T ss_pred HHHHHHHHHcC-CCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCC-----CCCc--EEEEEeCCccHHHHHHHHHHH
Confidence 44 344454 678999999999987654333 3455554432211 1122 22222222 45666777776
Q ss_pred HhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCcEEE
Q 004567 308 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVV 386 (744)
Q Consensus 308 ~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI 386 (744)
.+.+..+||||+|++.++.++..|+.. |+.+..+||+|++.+|..+++.|.. ...|||||+++++|||+ |+|++||
T Consensus 223 ~~~~~~~IIF~~s~~~~e~la~~L~~~--g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~-p~V~~VI 299 (470)
T TIGR00614 223 EFKGKSGIIYCPSRKKSEQVTASLQNL--GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINK-PDVRFVI 299 (470)
T ss_pred hcCCCceEEEECcHHHHHHHHHHHHhc--CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCc-ccceEEE
Confidence 444566799999999999999999885 8999999999999999999999999 89999999999999999 9999999
Q ss_pred EcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHH
Q 004567 387 QVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLRE 430 (744)
Q Consensus 387 ~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~ 430 (744)
+|++|.++..|+||+|||||.|..|.|++|+++.+...++.+..
T Consensus 300 ~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 300 HYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred EeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 99999999999999999999999999999999999988887755
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=6e-45 Score=424.80 Aligned_cols=333 Identities=22% Similarity=0.319 Sum_probs=263.9
Q ss_pred CCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHH
Q 004567 72 PISKKTKSGLKD-AGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTREL 150 (744)
Q Consensus 72 ~ls~~~~~~L~~-~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreL 150 (744)
++.......|+. +||..|+|+|.++|+.++.|+|+++.+|||||||+||++|++.. +..+|||+|+++|
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~----------~g~tlVisPl~sL 77 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL----------DGLTLVVSPLISL 77 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc----------CCCEEEEecHHHH
Confidence 344444555655 79999999999999999999999999999999999999999843 2358999999999
Q ss_pred HHHHHHHHHHhhccCCceEEEEEcCccChHHHH-----HhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhh
Q 004567 151 ADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEK-----EHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRI 225 (744)
Q Consensus 151 a~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~-----~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~l 225 (744)
+.|+.+.++.. ++.+..+.+ +....... ...+..+|+|+||++|....... .+...++++|||||||++
T Consensus 78 ~~dqv~~l~~~----gi~~~~~~s-~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~-~l~~~~l~~iVIDEaH~i 151 (607)
T PRK11057 78 MKDQVDQLLAN----GVAAACLNS-TQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLE-HLAHWNPALLAVDEAHCI 151 (607)
T ss_pred HHHHHHHHHHc----CCcEEEEcC-CCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHH-HHhhCCCCEEEEeCcccc
Confidence 99999988865 466666665 33332221 22346899999999987422211 233457899999999999
Q ss_pred hccc--hHHHH---HHHHHhCCCCCcEEEEeeccChhHHHHH--HHhcCCCccccccccccccCccccceeEEEcChhhH
Q 004567 226 LDVG--FKKAL---NAIVSQLPKHRQTFLFSATQTKSVQDLA--RLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK 298 (744)
Q Consensus 226 ld~g--f~~~l---~~Il~~lp~~~q~ll~SAT~~~~v~~la--~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~k 298 (744)
.+|| |...+ ..+...+| ..+++++|||++..+.... .+.+.+|....... ......|..+.....
T Consensus 152 ~~~G~~fr~~y~~L~~l~~~~p-~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~-------~r~nl~~~v~~~~~~ 223 (607)
T PRK11057 152 SQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF-------DRPNIRYTLVEKFKP 223 (607)
T ss_pred ccccCcccHHHHHHHHHHHhCC-CCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCC-------CCCcceeeeeeccch
Confidence 9987 55544 34445554 6889999999998876533 23345554332111 111223444455556
Q ss_pred HHHHHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccc
Q 004567 299 LDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLD 377 (744)
Q Consensus 299 l~~L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlD 377 (744)
+..+..++....+.++||||+|++.|+.++..|... ++.+..+||+|++.+|..+++.|.. ...|||||+++++|||
T Consensus 224 ~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~--g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GID 301 (607)
T PRK11057 224 LDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSR--GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGIN 301 (607)
T ss_pred HHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC--CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCC
Confidence 777888888877899999999999999999999885 8999999999999999999999999 8999999999999999
Q ss_pred cCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHHc
Q 004567 378 FNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA 431 (744)
Q Consensus 378 i~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~~ 431 (744)
+ |+|++||+||+|.+...|+||+|||||.|..|.|++|+++.+...++.+...
T Consensus 302 i-p~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~~ 354 (607)
T PRK11057 302 K-PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE 354 (607)
T ss_pred C-CCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHHhc
Confidence 9 9999999999999999999999999999999999999999998877777654
No 40
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=3.3e-43 Score=423.93 Aligned_cols=377 Identities=19% Similarity=0.298 Sum_probs=263.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCC--CCCCceEEEEcCChHH
Q 004567 73 ISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWG--PEDGVGSIIISPTREL 150 (744)
Q Consensus 73 ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~--~~~g~~aLIl~PtreL 150 (744)
+++.+...++. +|..|||+|.+|||.+++|+|++++||||||||++|++|++..+...... ...+.++|||+||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56777777665 79999999999999999999999999999999999999999998753221 1346789999999999
Q ss_pred HHHHHHHHHH-------hh----ccC-CceEEEEEcCccChHHHH-HhcCCCcEEEEChHHHHHHHhcCCCC--CCCCce
Q 004567 151 ADQLFDVLKA-------VG----KHH-NFSAGLLIGGRRDVDMEK-EHVNELNILVCTPGRLLQHMDETPNF--DCSQLQ 215 (744)
Q Consensus 151 a~Qi~~~l~~-------~~----~~~-~~~~~~l~Gg~~~~~~e~-~~~~~~~IlV~TPgrLl~~l~~~~~~--~~~~l~ 215 (744)
+.|++..+.. ++ ... ++.++..+|+ ....... .....++|+||||++|..++... .+ .+.+++
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gd-t~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~-~~~~~l~~l~ 174 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGD-TSSYEKQKMLKKPPHILITTPESLAILLNSP-KFREKLRTVK 174 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCC-CCHHHHHHHHhCCCCEEEecHHHHHHHhcCh-hHHHHHhcCC
Confidence 9999886653 22 222 5677888884 4443333 33457899999999998776443 33 368999
Q ss_pred EEEEcCchhhhccchHHHHH----HHHHhCCCCCcEEEEeeccChhHHHHHHHhcC-----CCccccccccccccCcccc
Q 004567 216 ILILDEADRILDVGFKKALN----AIVSQLPKHRQTFLFSATQTKSVQDLARLSLK-----DPQYLSVHEESVTATPNRL 286 (744)
Q Consensus 216 ~lVlDEAh~lld~gf~~~l~----~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~-----~p~~i~v~~~~~~~~~~~l 286 (744)
+|||||||.+++..++..+. .+....+...|++++|||+++. ..++..... .+..+.+..... .....+
T Consensus 175 ~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv~~~~-~k~~~i 252 (876)
T PRK13767 175 WVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIVDARF-VKPFDI 252 (876)
T ss_pred EEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEEccCC-CccceE
Confidence 99999999999876555444 4444444678999999999863 333332211 111111111100 000000
Q ss_pred ce-----eEEEcChh----hHHHHHHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhCC----CCcEEEeeCCCCHHHHH
Q 004567 287 QQ-----TAMIVPLE----QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRP----GIPLMCLYGRMKQDRRM 353 (744)
Q Consensus 287 ~q-----~~~~~~~~----~kl~~L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~----g~~v~~lhg~~~~~~R~ 353 (744)
.. ........ .....|..++.. ..++||||+|+..|+.++..|+...+ +..+..+||+|++.+|.
T Consensus 253 ~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~--~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~ 330 (876)
T PRK13767 253 KVISPVDDLIHTPAEEISEALYETLHELIKE--HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRL 330 (876)
T ss_pred EEeccCccccccccchhHHHHHHHHHHHHhc--CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHH
Confidence 00 00001111 122334444433 57899999999999999999987543 46899999999999999
Q ss_pred HHHHHHhc-cCCeEEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcC-CCCCeEEEEeCcc-hH-H---HHH
Q 004567 354 AIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARY-NSGGRSVLFLTPT-EM-K---MLE 426 (744)
Q Consensus 354 ~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~-g~~G~~il~l~~~-e~-~---~l~ 426 (744)
.+++.|++ ...|||||+++++|||| |+|++||+++.|.++..|+||+||+||. |..+.++++.... +. + +++
T Consensus 331 ~ve~~fk~G~i~vLVaTs~Le~GIDi-p~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~ 409 (876)
T PRK13767 331 EVEEKLKRGELKVVVSSTSLELGIDI-GYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLK 409 (876)
T ss_pred HHHHHHHcCCCeEEEECChHHhcCCC-CCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 99999999 89999999999999999 9999999999999999999999999986 4445555555433 22 2 222
Q ss_pred HHHHcCCCcccccccccccccHHHHHHHHHhcC
Q 004567 427 KLREAKIPIHFTKANTKRLQPVSGLLAALLVKY 459 (744)
Q Consensus 427 ~l~~~~i~i~~~~~~~~~~~~i~~~l~~~~~~~ 459 (744)
...+ -.++.+......+..+.+++..++...
T Consensus 410 ~~~~--~~ie~~~~~~~~~dvl~q~i~~~~~~~ 440 (876)
T PRK13767 410 KARE--GKIDRVHIPKNPLDVLAQHIVGMAIER 440 (876)
T ss_pred HHHh--CCCCCCCCCCCcHHHHHHHHHHHHHcC
Confidence 2222 233444444444555666766666553
No 41
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.9e-43 Score=421.59 Aligned_cols=337 Identities=20% Similarity=0.267 Sum_probs=260.2
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEc
Q 004567 67 RFDQLPISKKTKSGLKDAGFVKMTDIQRASLPH-SLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIIS 145 (744)
Q Consensus 67 ~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~-il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~ 145 (744)
.|++++|++.++++|.+.||..|+|+|.+|++. ++.|+|++++||||||||++|.+|++..+. .+.++|||+
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~-------~~~kal~i~ 74 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA-------RGGKALYIV 74 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh-------cCCcEEEEe
Confidence 588999999999999999999999999999998 778999999999999999999999999883 356799999
Q ss_pred CChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhh
Q 004567 146 PTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRI 225 (744)
Q Consensus 146 PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~l 225 (744)
||++||.|++..++.++. .++.++.++|+. ... ......++|+||||+++..++.+.. ..+.++++||+||+|.+
T Consensus 75 P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~-~~~--~~~l~~~~IiV~Tpek~~~llr~~~-~~l~~v~lvViDE~H~l 149 (737)
T PRK02362 75 PLRALASEKFEEFERFEE-LGVRVGISTGDY-DSR--DEWLGDNDIIVATSEKVDSLLRNGA-PWLDDITCVVVDEVHLI 149 (737)
T ss_pred ChHHHHHHHHHHHHHhhc-CCCEEEEEeCCc-Ccc--ccccCCCCEEEECHHHHHHHHhcCh-hhhhhcCEEEEECcccc
Confidence 999999999999998753 478888888843 322 2234678999999999988887643 23688999999999999
Q ss_pred hccchHHHHHHHHHhC---CCCCcEEEEeeccChhHHHHHHHhcCC-------Ccccccc--ccccccCccccceeEEEc
Q 004567 226 LDVGFKKALNAIVSQL---PKHRQTFLFSATQTKSVQDLARLSLKD-------PQYLSVH--EESVTATPNRLQQTAMIV 293 (744)
Q Consensus 226 ld~gf~~~l~~Il~~l---p~~~q~ll~SAT~~~~v~~la~~~l~~-------p~~i~v~--~~~~~~~~~~l~q~~~~~ 293 (744)
.+.+++..+..++..+ +...|++++|||+++. .+++.+.-.. |..+... ......... .+..+..
T Consensus 150 ~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~--~~~~~~~ 226 (737)
T PRK02362 150 DSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELADWLDAELVDSEWRPIDLREGVFYGGAIHFDD--SQREVEV 226 (737)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHHHhCCCcccCCCCCCCCeeeEecCCeecccc--ccccCCC
Confidence 9988888888776554 5678999999999864 3333322111 1111000 000000000 1111111
Q ss_pred Ch-hhHHHHHHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhCC----------------------------------CC
Q 004567 294 PL-EQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRP----------------------------------GI 338 (744)
Q Consensus 294 ~~-~~kl~~L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~----------------------------------g~ 338 (744)
+. ...+..+...+. .++++||||+|++.|+.++..|..... ..
T Consensus 227 ~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~ 304 (737)
T PRK02362 227 PSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAK 304 (737)
T ss_pred ccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHh
Confidence 11 122333444333 368999999999999998888765321 13
Q ss_pred cEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCcEEEE----cC-----CCCCHhHHHHHhhccCcCC
Q 004567 339 PLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQ----VD-----CPEDVASYIHRVGRTARYN 408 (744)
Q Consensus 339 ~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~----~d-----~P~s~~~yiQRiGRagR~g 408 (744)
.+.++||+|++.+|..+++.|++ ...|||||+++++|+|+ |++++||+ || .|.+..+|+||+|||||.|
T Consensus 305 gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~Gvnl-Pa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g 383 (737)
T PRK02362 305 GAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNL-PARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPG 383 (737)
T ss_pred CEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCC-CceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCC
Confidence 68899999999999999999999 89999999999999999 99999987 66 5889999999999999998
Q ss_pred CC--CeEEEEeCcch
Q 004567 409 SG--GRSVLFLTPTE 421 (744)
Q Consensus 409 ~~--G~~il~l~~~e 421 (744)
.+ |.+++++...+
T Consensus 384 ~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 384 LDPYGEAVLLAKSYD 398 (737)
T ss_pred CCCCceEEEEecCch
Confidence 75 99999987753
No 42
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2.6e-43 Score=411.47 Aligned_cols=327 Identities=23% Similarity=0.342 Sum_probs=263.2
Q ss_pred HHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHH
Q 004567 80 GLKD-AGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVL 158 (744)
Q Consensus 80 ~L~~-~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l 158 (744)
.|++ +||..|+|+|.++|+.++.|+|+++++|||+|||+||++|++.. +..+|||+|+++|+.|++..+
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~----------~g~~lVisPl~sL~~dq~~~l 73 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL----------KGLTVVISPLISLMKDQVDQL 73 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc----------CCcEEEEcCCHHHHHHHHHHH
Confidence 4544 79999999999999999999999999999999999999999732 235899999999999999988
Q ss_pred HHhhccCCceEEEEEcCccChHHHH-----HhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccc--hH
Q 004567 159 KAVGKHHNFSAGLLIGGRRDVDMEK-----EHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG--FK 231 (744)
Q Consensus 159 ~~~~~~~~~~~~~l~Gg~~~~~~e~-----~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~g--f~ 231 (744)
+.+ ++.+..+.+ +.+..... ...+.++|+++||++|....... .+...++++|||||||++.+|| |.
T Consensus 74 ~~~----gi~~~~~~s-~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~-~l~~~~l~~iViDEaH~i~~~g~~fr 147 (591)
T TIGR01389 74 RAA----GVAAAYLNS-TLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLN-MLQRIPIALVAVDEAHCVSQWGHDFR 147 (591)
T ss_pred HHc----CCcEEEEeC-CCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHH-HHhcCCCCEEEEeCCcccccccCccH
Confidence 875 466766766 33332221 12357899999999986433221 2345689999999999999887 66
Q ss_pred HHHHHH---HHhCCCCCcEEEEeeccChhHHHHHHHhc--CCCccccccccccccCccccceeEEEcChhhHHHHHHHHH
Q 004567 232 KALNAI---VSQLPKHRQTFLFSATQTKSVQDLARLSL--KDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFI 306 (744)
Q Consensus 232 ~~l~~I---l~~lp~~~q~ll~SAT~~~~v~~la~~~l--~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl~~L~~lL 306 (744)
..+..+ ...+|. .+++++|||++..+.......+ .++..+.. ...+....|.+.....+...+..++
T Consensus 148 p~y~~l~~l~~~~~~-~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~-------~~~r~nl~~~v~~~~~~~~~l~~~l 219 (591)
T TIGR01389 148 PEYQRLGSLAERFPQ-VPRIALTATADAETRQDIRELLRLADANEFIT-------SFDRPNLRFSVVKKNNKQKFLLDYL 219 (591)
T ss_pred HHHHHHHHHHHhCCC-CCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec-------CCCCCCcEEEEEeCCCHHHHHHHHH
Confidence 655444 455554 4599999999998876544444 33332211 1122233444555566778889999
Q ss_pred HHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCcEE
Q 004567 307 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWV 385 (744)
Q Consensus 307 k~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~V 385 (744)
..+.+.++||||+|++.|+.+++.|... ++++..+||+|++.+|..+++.|.. ...|||||+++++|||+ |+|++|
T Consensus 220 ~~~~~~~~IIf~~sr~~~e~la~~L~~~--g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~-p~v~~V 296 (591)
T TIGR01389 220 KKHRGQSGIIYASSRKKVEELAERLESQ--GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDK-PNVRFV 296 (591)
T ss_pred HhcCCCCEEEEECcHHHHHHHHHHHHhC--CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcC-CCCCEE
Confidence 8887889999999999999999999874 8999999999999999999999999 89999999999999999 999999
Q ss_pred EEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHHcCC
Q 004567 386 VQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKI 433 (744)
Q Consensus 386 I~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~~~i 433 (744)
|+|++|.+...|+|++|||||.|..|.|++|+.+.+...++.+.....
T Consensus 297 I~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i~~~~ 344 (591)
T TIGR01389 297 IHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRIEQSE 344 (591)
T ss_pred EEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999888888766533
No 43
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=6.2e-42 Score=407.71 Aligned_cols=345 Identities=20% Similarity=0.264 Sum_probs=264.7
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEc
Q 004567 67 RFDQLPISKKTKSGLKDAGFVKMTDIQRASLPH-SLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIIS 145 (744)
Q Consensus 67 ~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~-il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~ 145 (744)
.|+++++++.+.+.|++.||..|+|+|.+|++. ++.|+|++++||||||||++|.+|++..+... +.++|||+
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~------~~~~l~l~ 75 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE------GGKAVYLV 75 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc------CCeEEEEe
Confidence 588999999999999999999999999999985 88999999999999999999999999987542 56899999
Q ss_pred CChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhh
Q 004567 146 PTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRI 225 (744)
Q Consensus 146 PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~l 225 (744)
|+++|+.|++..+..+. ..++.++.++|+. +.. ......++|+|+||+++..++.... ..++++++||+||+|.+
T Consensus 76 P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~-~~~--~~~~~~~~IiV~Tpe~~~~ll~~~~-~~l~~l~lvViDE~H~l 150 (720)
T PRK00254 76 PLKALAEEKYREFKDWE-KLGLRVAMTTGDY-DST--DEWLGKYDIIIATAEKFDSLLRHGS-SWIKDVKLVVADEIHLI 150 (720)
T ss_pred ChHHHHHHHHHHHHHHh-hcCCEEEEEeCCC-CCc--hhhhccCCEEEEcHHHHHHHHhCCc-hhhhcCCEEEEcCcCcc
Confidence 99999999999998864 4578899998843 322 2334678999999999988776543 33689999999999999
Q ss_pred hccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcCh-------hhH
Q 004567 226 LDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPL-------EQK 298 (744)
Q Consensus 226 ld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~-------~~k 298 (744)
.+.+++..+..++..++...|++++|||+++. .+++.+ +..+.+... ............+.+..... ...
T Consensus 151 ~~~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~w-l~~~~~~~~-~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 227 (720)
T PRK00254 151 GSYDRGATLEMILTHMLGRAQILGLSATVGNA-EELAEW-LNAELVVSD-WRPVKLRKGVFYQGFLFWEDGKIERFPNSW 227 (720)
T ss_pred CCccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHHH-hCCccccCC-CCCCcceeeEecCCeeeccCcchhcchHHH
Confidence 99999999999999999999999999999874 555543 332221110 00000000001111111111 111
Q ss_pred HHHHHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhC-------------------------------CCCcEEEeeCCC
Q 004567 299 LDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLR-------------------------------PGIPLMCLYGRM 347 (744)
Q Consensus 299 l~~L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~-------------------------------~g~~v~~lhg~~ 347 (744)
...+...+.. +.++||||+|++.|+.++..|.... -...+.++||+|
T Consensus 228 ~~~~~~~i~~--~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl 305 (720)
T PRK00254 228 ESLVYDAVKK--GKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGL 305 (720)
T ss_pred HHHHHHHHHh--CCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCC
Confidence 2334445543 6899999999999988776664310 023589999999
Q ss_pred CHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCcEEEE-------cCCCC-CHhHHHHHhhccCcCC--CCCeEEEE
Q 004567 348 KQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQ-------VDCPE-DVASYIHRVGRTARYN--SGGRSVLF 416 (744)
Q Consensus 348 ~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~-------~d~P~-s~~~yiQRiGRagR~g--~~G~~il~ 416 (744)
++.+|..+++.|++ ..+|||||+++++|+|+ |++++||. ++.|. ++.+|+||+|||||.| ..|.++++
T Consensus 306 ~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvni-pa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~ 384 (720)
T PRK00254 306 GRTERVLIEDAFREGLIKVITATPTLSAGINL-PAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIV 384 (720)
T ss_pred CHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCC-CceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEE
Confidence 99999999999999 89999999999999999 99999984 45544 5779999999999965 57999999
Q ss_pred eCcch-HHHHHHH
Q 004567 417 LTPTE-MKMLEKL 428 (744)
Q Consensus 417 l~~~e-~~~l~~l 428 (744)
+...+ ..+++.+
T Consensus 385 ~~~~~~~~~~~~~ 397 (720)
T PRK00254 385 ATTEEPSKLMERY 397 (720)
T ss_pred ecCcchHHHHHHH
Confidence 98755 2445444
No 44
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-43 Score=349.98 Aligned_cols=322 Identities=26% Similarity=0.485 Sum_probs=280.7
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEE
Q 004567 65 STRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIII 144 (744)
Q Consensus 65 ~~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl 144 (744)
+..|.++-|.|++++++-.+||..|+.+|.+|||.+.-|.|++++|..|.|||.+|++..|+.+-. ......+|++
T Consensus 41 ssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiep----v~g~vsvlvm 116 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP----VDGQVSVLVM 116 (387)
T ss_pred ccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCC----CCCeEEEEEE
Confidence 456999999999999999999999999999999999999999999999999999999999988722 1335778999
Q ss_pred cCChHHHHHHHHHHHHhhccC-CceEEEEEcCccChHHHHHhc-CCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCc
Q 004567 145 SPTRELADQLFDVLKAVGKHH-NFSAGLLIGGRRDVDMEKEHV-NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEA 222 (744)
Q Consensus 145 ~PtreLa~Qi~~~l~~~~~~~-~~~~~~l~Gg~~~~~~e~~~~-~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEA 222 (744)
|.|||||.||.....+|.+++ ++.+..++| |..++.....+ +-++|+|+||||++.+.++. .+++.++..+|||||
T Consensus 117 chtrelafqi~~ey~rfskymP~vkvaVFfG-G~~Ikkdee~lk~~PhivVgTPGrilALvr~k-~l~lk~vkhFvlDEc 194 (387)
T KOG0329|consen 117 CHTRELAFQISKEYERFSKYMPSVKVSVFFG-GLFIKKDEELLKNCPHIVVGTPGRILALVRNR-SLNLKNVKHFVLDEC 194 (387)
T ss_pred eccHHHHHHHHHHHHHHHhhCCCceEEEEEc-ceeccccHHHHhCCCeEEEcCcHHHHHHHHhc-cCchhhcceeehhhH
Confidence 999999999999999999876 467888888 55655555544 46899999999999887766 789999999999999
Q ss_pred hhhhc-cchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhHHHH
Q 004567 223 DRILD-VGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDM 301 (744)
Q Consensus 223 h~lld-~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl~~ 301 (744)
|.|++ ...+..+..|.+..|...|+++||||+++.++..++.++.+|..+.+..+.. .+...++|+|+......|-..
T Consensus 195 dkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~K-LtLHGLqQ~YvkLke~eKNrk 273 (387)
T KOG0329|consen 195 DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAK-LTLHGLQQYYVKLKENEKNRK 273 (387)
T ss_pred HHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhh-hhhhhHHHHHHhhhhhhhhhh
Confidence 98886 4578999999999999999999999999999999999999999999887653 667889999999988888888
Q ss_pred HHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhccCCeEEEccccccccccCCC
Q 004567 302 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFNKA 381 (744)
Q Consensus 302 L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~~~~VLVaTdv~arGlDi~p~ 381 (744)
|.++|....-..++||+.|..... | ..+ ||||++.+||+|| ..
T Consensus 274 l~dLLd~LeFNQVvIFvKsv~Rl~---------------------------------f--~kr-~vat~lfgrgmdi-er 316 (387)
T KOG0329|consen 274 LNDLLDVLEFNQVVIFVKSVQRLS---------------------------------F--QKR-LVATDLFGRGMDI-ER 316 (387)
T ss_pred hhhhhhhhhhcceeEeeehhhhhh---------------------------------h--hhh-hHHhhhhccccCc-cc
Confidence 888888777789999998866511 2 123 8999999999999 89
Q ss_pred CcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchH-HHHHHHHH
Q 004567 382 VDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM-KMLEKLRE 430 (744)
Q Consensus 382 V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~-~~l~~l~~ 430 (744)
|+.|+|||+|.+.++|.||+|||||.|..|.++.|++..+. ..+..+..
T Consensus 317 vNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqd 366 (387)
T KOG0329|consen 317 VNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQD 366 (387)
T ss_pred ceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhH
Confidence 99999999999999999999999999999999999987654 55555544
No 45
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.1e-41 Score=404.78 Aligned_cols=320 Identities=18% Similarity=0.240 Sum_probs=251.8
Q ss_pred CHHHHHHH-HHCCCCCCcHHHHHHHHHHHcC------CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcC
Q 004567 74 SKKTKSGL-KDAGFVKMTDIQRASLPHSLCG------RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISP 146 (744)
Q Consensus 74 s~~~~~~L-~~~gf~~~t~iQ~~aip~il~g------~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~P 146 (744)
+......+ ...+| .||++|..||+.++.+ +|++++|+||||||.+|++|++..+. .|.+++|++|
T Consensus 437 ~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~-------~g~qvlvLvP 508 (926)
T TIGR00580 437 DLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL-------DGKQVAVLVP 508 (926)
T ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH-------hCCeEEEEeC
Confidence 44455555 44688 5999999999999985 79999999999999999999998873 3578999999
Q ss_pred ChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHH-----hcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcC
Q 004567 147 TRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKE-----HVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDE 221 (744)
Q Consensus 147 treLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~-----~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDE 221 (744)
|++||.|+++.+++++...++.+..++|+ ........ ..+.++||||||. ++ . ..+.+.++++|||||
T Consensus 509 T~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~-~~~~e~~~~~~~l~~g~~dIVIGTp~-ll---~--~~v~f~~L~llVIDE 581 (926)
T TIGR00580 509 TTLLAQQHFETFKERFANFPVTIELLSRF-RSAKEQNEILKELASGKIDILIGTHK-LL---Q--KDVKFKDLGLLIIDE 581 (926)
T ss_pred cHHHHHHHHHHHHHHhccCCcEEEEEecc-ccHHHHHHHHHHHHcCCceEEEchHH-Hh---h--CCCCcccCCEEEeec
Confidence 99999999999999888888888888873 33222211 1246899999994 32 2 245678999999999
Q ss_pred chhhhccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhHHHH
Q 004567 222 ADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDM 301 (744)
Q Consensus 222 Ah~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl~~ 301 (744)
+|++ +......+..++..+|+++||||+.+....++...+.++..+...... . ..+.+++.......-...
T Consensus 582 ahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~--R--~~V~t~v~~~~~~~i~~~ 652 (926)
T TIGR00580 582 EQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED--R--LPVRTFVMEYDPELVREA 652 (926)
T ss_pred cccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC--c--cceEEEEEecCHHHHHHH
Confidence 9984 334455667778889999999998777666666666666655443221 1 123333332222111122
Q ss_pred HHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCC
Q 004567 302 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNK 380 (744)
Q Consensus 302 L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p 380 (744)
+...+. .+++++|||+++..++.+++.|+...|++++..+||+|++.+|..++..|.+ +..|||||+++++|||| |
T Consensus 653 i~~el~--~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDI-p 729 (926)
T TIGR00580 653 IRRELL--RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDI-P 729 (926)
T ss_pred HHHHHH--cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhccccc-c
Confidence 222222 2689999999999999999999998899999999999999999999999999 99999999999999999 9
Q ss_pred CCcEEEEcCCCC-CHhHHHHHhhccCcCCCCCeEEEEeCcc
Q 004567 381 AVDWVVQVDCPE-DVASYIHRVGRTARYNSGGRSVLFLTPT 420 (744)
Q Consensus 381 ~V~~VI~~d~P~-s~~~yiQRiGRagR~g~~G~~il~l~~~ 420 (744)
++++||+++.|. +..+|+||+||+||.|+.|.|++++.+.
T Consensus 730 ~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 730 NANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred cCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 999999999865 6889999999999999999999998653
No 46
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=8.7e-42 Score=397.69 Aligned_cols=313 Identities=20% Similarity=0.237 Sum_probs=238.3
Q ss_pred CCCCCCcHHHHHHHHHHHcCC-CEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEE-EcCChHHHHHHHHHHHHh
Q 004567 84 AGFVKMTDIQRASLPHSLCGR-DILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSII-ISPTRELADQLFDVLKAV 161 (744)
Q Consensus 84 ~gf~~~t~iQ~~aip~il~g~-dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLI-l~PtreLa~Qi~~~l~~~ 161 (744)
+||. |||||.++||.++.|+ ++++++|||||||.+|.++++... .. ....+.|| ++|||+|+.|+++.+.++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~-~~----~~~~~rLv~~vPtReLa~Qi~~~~~~~ 85 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE-IG----AKVPRRLVYVVNRRTVVDQVTEEAEKI 85 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc-cc----ccccceEEEeCchHHHHHHHHHHHHHH
Confidence 6997 9999999999999998 588889999999997766665321 11 22344554 779999999999999999
Q ss_pred hccC-----------------------CceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCC---------
Q 004567 162 GKHH-----------------------NFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNF--------- 209 (744)
Q Consensus 162 ~~~~-----------------------~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~--------- 209 (744)
+..+ ++.+..++||.....+......+++|||||+. ++.+...+
T Consensus 86 ~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D----~i~sr~L~~gYg~~~~~ 161 (844)
T TIGR02621 86 GERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVD----MIGSRLLFSGYGCGFKS 161 (844)
T ss_pred HHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHH----HHcCCcccccccccccc
Confidence 8755 47888999944433444444468999999964 44433221
Q ss_pred ------CCCCceEEEEcCchhhhccchHHHHHHHHHhC--CCC---CcEEEEeeccChhHHHHHHHhcCCCccccccccc
Q 004567 210 ------DCSQLQILILDEADRILDVGFKKALNAIVSQL--PKH---RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEES 278 (744)
Q Consensus 210 ------~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~l--p~~---~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~ 278 (744)
.+.++++||||||| ++++|...+..|+..+ +.. +|+++||||++..+..++..++.++..+.+....
T Consensus 162 ~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~ 239 (844)
T TIGR02621 162 RPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKR 239 (844)
T ss_pred ccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccccc
Confidence 15789999999999 7899999999999975 442 6999999999998888888887777666553322
Q ss_pred cccCccccceeEEEcChhhHHHHHHHHHH---HhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHH--
Q 004567 279 VTATPNRLQQTAMIVPLEQKLDMLWSFIK---AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRM-- 353 (744)
Q Consensus 279 ~~~~~~~l~q~~~~~~~~~kl~~L~~lLk---~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~-- 353 (744)
.+...+.++ +.++...++..+...+. ....+++||||||++.|+.+++.|... ++ ..+||+|++.+|.
T Consensus 240 --l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~--g~--~lLHG~m~q~dR~~~ 312 (844)
T TIGR02621 240 --LAAKKIVKL-VPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKE--KF--ELLTGTLRGAERDDL 312 (844)
T ss_pred --ccccceEEE-EecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhc--CC--eEeeCCCCHHHHhhH
Confidence 222344443 34444445544443321 233678999999999999999999875 44 8999999999999
Q ss_pred ---HHHHHHhc------------cCCeEEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCC-CeEEEEe
Q 004567 354 ---AIYAQFCE------------KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSG-GRSVLFL 417 (744)
Q Consensus 354 ---~i~~~F~~------------~~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~-G~~il~l 417 (744)
.+++.|++ +..|||||+++++|||| +. ++||++.+| .++|+||+||+||.|+. |..+.++
T Consensus 313 ~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDI-d~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 313 VKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNI-SA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred HHHHHHHHHhccccccccccccccceEEeccchhhhcccC-Cc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEE
Confidence 78899975 14699999999999999 74 899998776 68999999999999985 4446666
Q ss_pred Cc
Q 004567 418 TP 419 (744)
Q Consensus 418 ~~ 419 (744)
.+
T Consensus 389 ~~ 390 (844)
T TIGR02621 389 HL 390 (844)
T ss_pred ee
Confidence 44
No 47
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.4e-40 Score=392.28 Aligned_cols=371 Identities=20% Similarity=0.253 Sum_probs=265.3
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcC------CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHH
Q 004567 77 TKSGLKDAGFVKMTDIQRASLPHSLCG------RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTREL 150 (744)
Q Consensus 77 ~~~~L~~~gf~~~t~iQ~~aip~il~g------~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreL 150 (744)
+...+..++| .||++|.+||+.+..+ .++|++|+||||||++|++|++..+. .|.+++|++||++|
T Consensus 251 ~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~-------~g~q~lilaPT~~L 322 (681)
T PRK10917 251 LKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE-------AGYQAALMAPTEIL 322 (681)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-------cCCeEEEEeccHHH
Confidence 3444556788 7999999999999986 48999999999999999999998872 47889999999999
Q ss_pred HHHHHHHHHHhhccCCceEEEEEcCccChHHHH-----HhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhh
Q 004567 151 ADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEK-----EHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRI 225 (744)
Q Consensus 151 a~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~-----~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~l 225 (744)
|.|+++.+++++..+++.+++++|+ ....... ...+.++|+||||+.+.+ .+.+.+++++||||+|++
T Consensus 323 A~Q~~~~l~~l~~~~~i~v~ll~G~-~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~v~~~~l~lvVIDE~Hrf 395 (681)
T PRK10917 323 AEQHYENLKKLLEPLGIRVALLTGS-LKGKERREILEAIASGEADIVIGTHALIQD------DVEFHNLGLVIIDEQHRF 395 (681)
T ss_pred HHHHHHHHHHHHhhcCcEEEEEcCC-CCHHHHHHHHHHHhCCCCCEEEchHHHhcc------cchhcccceEEEechhhh
Confidence 9999999999998889999999994 4432221 122469999999988743 234689999999999986
Q ss_pred hccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhHHHHHHHH
Q 004567 226 LDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSF 305 (744)
Q Consensus 226 ld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl~~L~~l 305 (744)
.. .....+......+++++||||+.+....+......++..+ .... .....+...+... .....++.+
T Consensus 396 g~-----~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i--~~~p--~~r~~i~~~~~~~---~~~~~~~~~ 463 (681)
T PRK10917 396 GV-----EQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVI--DELP--PGRKPITTVVIPD---SRRDEVYER 463 (681)
T ss_pred hH-----HHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEE--ecCC--CCCCCcEEEEeCc---ccHHHHHHH
Confidence 32 2233344445568999999998765544433222222222 1111 1011233332222 222334444
Q ss_pred HHHh--CCCcEEEEecc--------hHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEcccccc
Q 004567 306 IKAH--LNSKILVFLTS--------CKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASR 374 (744)
Q Consensus 306 Lk~~--~~~k~IVF~~s--------~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~ar 374 (744)
+... .+.+++|||++ +..+..+++.|...++++.+..+||+|++.+|..+++.|++ +..|||||+++++
T Consensus 464 i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~ 543 (681)
T PRK10917 464 IREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEV 543 (681)
T ss_pred HHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceee
Confidence 4432 36799999995 45677888889887778899999999999999999999999 8999999999999
Q ss_pred ccccCCCCcEEEEcCCCC-CHhHHHHHhhccCcCCCCCeEEEEeC-c---chHHHHHHHHHc--CCCccccccccccccc
Q 004567 375 GLDFNKAVDWVVQVDCPE-DVASYIHRVGRTARYNSGGRSVLFLT-P---TEMKMLEKLREA--KIPIHFTKANTKRLQP 447 (744)
Q Consensus 375 GlDi~p~V~~VI~~d~P~-s~~~yiQRiGRagR~g~~G~~il~l~-~---~e~~~l~~l~~~--~i~i~~~~~~~~~~~~ 447 (744)
|||+ |++++||+++.|. +.+.|.||+||+||.|..|.|++++. + .....++.+.+. +..+.+..+....--+
T Consensus 544 GiDi-p~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~~~dgf~iae~dl~~rg~g~ 622 (681)
T PRK10917 544 GVDV-PNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRETNDGFVIAEKDLELRGPGE 622 (681)
T ss_pred Cccc-CCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHHhcchHHHHHHhHhhCCCcc
Confidence 9999 9999999999986 57889999999999999999999995 4 233566666653 4444443332111000
Q ss_pred H----HH-----HHHHHHhcChhHHHHHHHHHHHHHHH
Q 004567 448 V----SG-----LLAALLVKYPDMQHRAQKAFITYLRS 476 (744)
Q Consensus 448 i----~~-----~l~~~~~~~~~l~~~a~~af~sy~rs 476 (744)
+ +. .+.. +.+|.++...|..+...++..
T Consensus 623 ~~g~~q~g~~~~~~~~-~~~d~~l~~~a~~~a~~~~~~ 659 (681)
T PRK10917 623 LLGTRQSGLPEFKVAD-LVRDEELLEEARKDARELLER 659 (681)
T ss_pred ccCceecCCCCeeEee-HhhhHHHHHHHHHHHHHHHHh
Confidence 0 00 0111 223666777777776666654
No 48
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=3.8e-40 Score=401.74 Aligned_cols=318 Identities=16% Similarity=0.213 Sum_probs=253.7
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHHcC------CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCC
Q 004567 74 SKKTKSGLKDAGFVKMTDIQRASLPHSLCG------RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPT 147 (744)
Q Consensus 74 s~~~~~~L~~~gf~~~t~iQ~~aip~il~g------~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~Pt 147 (744)
+.+.......++| .||++|.+||+.++.+ +|+|++|+||||||.+|+.+++..+ ..|.+++||+||
T Consensus 587 ~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~-------~~g~qvlvLvPT 658 (1147)
T PRK10689 587 REQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV-------ENHKQVAVLVPT 658 (1147)
T ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHH-------HcCCeEEEEeCc
Confidence 4555666788899 7999999999999987 8999999999999999998887765 247889999999
Q ss_pred hHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHh-----cCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCc
Q 004567 148 RELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEH-----VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEA 222 (744)
Q Consensus 148 reLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~-----~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEA 222 (744)
++||.|++..|...+...++.+.+++|++ +....... .+.++|+||||+.+ . ..+.+.++++|||||+
T Consensus 659 ~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~-s~~e~~~il~~l~~g~~dIVVgTp~lL----~--~~v~~~~L~lLVIDEa 731 (1147)
T PRK10689 659 TLLAQQHYDNFRDRFANWPVRIEMLSRFR-SAKEQTQILAEAAEGKIDILIGTHKLL----Q--SDVKWKDLGLLIVDEE 731 (1147)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEEECCC-CHHHHHHHHHHHHhCCCCEEEECHHHH----h--CCCCHhhCCEEEEech
Confidence 99999999999987777788888888844 43333322 24689999999744 2 1345689999999999
Q ss_pred hhhhccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcCh-hhHHHH
Q 004567 223 DRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPL-EQKLDM 301 (744)
Q Consensus 223 h~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~-~~kl~~ 301 (744)
|++ |+. ....+..++.++|+++||||+++....++..++.++..+....... ..+.+.+..... ..+...
T Consensus 732 hrf---G~~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r----~~v~~~~~~~~~~~~k~~i 802 (1147)
T PRK10689 732 HRF---GVR--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR----LAVKTFVREYDSLVVREAI 802 (1147)
T ss_pred hhc---chh--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCC----CCceEEEEecCcHHHHHHH
Confidence 996 332 2455677888999999999998888888888888887775433211 123333332222 112222
Q ss_pred HHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCC
Q 004567 302 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNK 380 (744)
Q Consensus 302 L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p 380 (744)
+..+. .+++++|||+++..++.+++.|.+..|++.+..+||+|++.+|..++..|.+ +..|||||+++++|||| |
T Consensus 803 l~el~---r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDI-P 878 (1147)
T PRK10689 803 LREIL---RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI-P 878 (1147)
T ss_pred HHHHh---cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhccccc-c
Confidence 33332 2578999999999999999999999899999999999999999999999999 99999999999999999 9
Q ss_pred CCcEEEEcCCC-CCHhHHHHHhhccCcCCCCCeEEEEeCc
Q 004567 381 AVDWVVQVDCP-EDVASYIHRVGRTARYNSGGRSVLFLTP 419 (744)
Q Consensus 381 ~V~~VI~~d~P-~s~~~yiQRiGRagR~g~~G~~il~l~~ 419 (744)
+|++||..+.. .+...|+||+||+||.|+.|.|++++.+
T Consensus 879 ~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 879 TANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred cCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 99999965442 3667899999999999999999998854
No 49
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.9e-40 Score=392.92 Aligned_cols=347 Identities=19% Similarity=0.255 Sum_probs=259.2
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcC
Q 004567 67 RFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISP 146 (744)
Q Consensus 67 ~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~P 146 (744)
.|++++|++.+++.+...+|. |+++|.++++.+++|+|++++||||||||++|++++++.+.. +.++|||+|
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~-------~~k~v~i~P 73 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA-------GLKSIYIVP 73 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh-------CCcEEEEec
Confidence 588999999999999999996 999999999999999999999999999999999999988743 467999999
Q ss_pred ChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhh
Q 004567 147 TRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRIL 226 (744)
Q Consensus 147 treLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~ll 226 (744)
+++||.|+++.+.++. ..++.++..+|+.... ......++|+|+||+++..++.+.+ ..+.++++||+||||++.
T Consensus 74 ~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~---~~~~~~~dIiv~Tpek~~~l~~~~~-~~l~~v~lvViDEaH~l~ 148 (674)
T PRK01172 74 LRSLAMEKYEELSRLR-SLGMRVKISIGDYDDP---PDFIKRYDVVILTSEKADSLIHHDP-YIINDVGLIVADEIHIIG 148 (674)
T ss_pred hHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCC---hhhhccCCEEEECHHHHHHHHhCCh-hHHhhcCEEEEecchhcc
Confidence 9999999999998864 4678888888843321 2234578999999999988877653 346899999999999999
Q ss_pred ccchHHHHHHHHH---hCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeE-----EEcC-hhh
Q 004567 227 DVGFKKALNAIVS---QLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTA-----MIVP-LEQ 297 (744)
Q Consensus 227 d~gf~~~l~~Il~---~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~-----~~~~-~~~ 297 (744)
+.+++..+..++. .++...|++++|||+++. .+++.+ +..+.+. ... .+..+.... ..+. ...
T Consensus 149 d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~w-l~~~~~~-~~~-----r~vpl~~~i~~~~~~~~~~~~~ 220 (674)
T PRK01172 149 DEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQW-LNASLIK-SNF-----RPVPLKLGILYRKRLILDGYER 220 (674)
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHHH-hCCCccC-CCC-----CCCCeEEEEEecCeeeeccccc
Confidence 8888877777654 445678999999999864 455543 2221111 000 011111000 0011 111
Q ss_pred HHHHHHHHHHH--hCCCcEEEEecchHHHHHHHHHHHhhCCC-----------------------CcEEEeeCCCCHHHH
Q 004567 298 KLDMLWSFIKA--HLNSKILVFLTSCKQVKYVFEAFKKLRPG-----------------------IPLMCLYGRMKQDRR 352 (744)
Q Consensus 298 kl~~L~~lLk~--~~~~k~IVF~~s~~~v~~l~~~L~~l~~g-----------------------~~v~~lhg~~~~~~R 352 (744)
....+..++.. ..++++||||+|++.++.++..|....+. ..+..+||+|++.+|
T Consensus 221 ~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR 300 (674)
T PRK01172 221 SQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQR 300 (674)
T ss_pred ccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHH
Confidence 11123344443 23689999999999999999888764321 247889999999999
Q ss_pred HHHHHHHhc-cCCeEEEccccccccccCCCCcEEEEcCC---------CCCHhHHHHHhhccCcCCC--CCeEEEEeCcc
Q 004567 353 MAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDC---------PEDVASYIHRVGRTARYNS--GGRSVLFLTPT 420 (744)
Q Consensus 353 ~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~---------P~s~~~yiQRiGRagR~g~--~G~~il~l~~~ 420 (744)
..+++.|++ ..+|||||+++++|+|+ |+. .||+.|. |.++.+|.||+|||||.|. .|.+++++...
T Consensus 301 ~~ve~~f~~g~i~VLvaT~~la~Gvni-pa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 301 RFIEEMFRNRYIKVIVATPTLAAGVNL-PAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred HHHHHHHHcCCCeEEEecchhhccCCC-cce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 999999999 89999999999999999 864 5665553 5688999999999999985 57788887654
Q ss_pred h-HHHHHHHH-HcCCCcc
Q 004567 421 E-MKMLEKLR-EAKIPIH 436 (744)
Q Consensus 421 e-~~~l~~l~-~~~i~i~ 436 (744)
+ ...++++. ....|++
T Consensus 379 ~~~~~~~~~l~~~~~pi~ 396 (674)
T PRK01172 379 ASYDAAKKYLSGEPEPVI 396 (674)
T ss_pred ccHHHHHHHHcCCCCcee
Confidence 4 34444443 3344444
No 50
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=3.3e-40 Score=382.52 Aligned_cols=372 Identities=20% Similarity=0.287 Sum_probs=294.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhc-cCCCCCCceEEEEcCChHHH
Q 004567 73 ISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKE-RWGPEDGVGSIIISPTRELA 151 (744)
Q Consensus 73 ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~-~~~~~~g~~aLIl~PtreLa 151 (744)
|++.+.+.++.. |..|||.|.+|||.+.+|+|+|+.||||||||+|+++|++..|... .-...+|..+|||+|.++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 689999999888 9999999999999999999999999999999999999999999887 34456789999999999999
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCC--CCCCceEEEEcCchhhhccc
Q 004567 152 DQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNF--DCSQLQILILDEADRILDVG 229 (744)
Q Consensus 152 ~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~--~~~~l~~lVlDEAh~lld~g 229 (744)
+.+...+...+...++.+...+|+...........+.++|+|+||+.|.-.+... .+ .+.++.++|+||.|.+.+..
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~-~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSP-KFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCH-HHHHHhcCCcEEEeehhhhhhccc
Confidence 9999999999999999999899966555555555678999999999997666543 22 36899999999999998776
Q ss_pred hHHH----HHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCC---ccccccccccccCccccceeEEE---------c
Q 004567 230 FKKA----LNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDP---QYLSVHEESVTATPNRLQQTAMI---------V 293 (744)
Q Consensus 230 f~~~----l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p---~~i~v~~~~~~~~~~~l~q~~~~---------~ 293 (744)
.+.+ +..+....+ ..|.+++|||+.+. ...++...... .++.+... ..+...+.. .
T Consensus 166 RG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~~------k~~~i~v~~p~~~~~~~~~ 237 (814)
T COG1201 166 RGVQLALSLERLRELAG-DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSAA------KKLEIKVISPVEDLIYDEE 237 (814)
T ss_pred cchhhhhhHHHHHhhCc-ccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcccC------CcceEEEEecCCccccccc
Confidence 5544 444444455 88999999999854 44444433332 22222211 111111111 1
Q ss_pred ChhhHHHHHHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEcccc
Q 004567 294 PLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA 372 (744)
Q Consensus 294 ~~~~kl~~L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~ 372 (744)
.....+..++.+++.| ..+|||+||+.+++.++..|++++ +.++..+||.++.+.|..+.+.|++ ..+++|||+.+
T Consensus 238 ~~~~~~~~i~~~v~~~--~ttLIF~NTR~~aE~l~~~L~~~~-~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSL 314 (814)
T COG1201 238 LWAALYERIAELVKKH--RTTLIFTNTRSGAERLAFRLKKLG-PDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSL 314 (814)
T ss_pred hhHHHHHHHHHHHhhc--CcEEEEEeChHHHHHHHHHHHHhc-CCceeeecccccHHHHHHHHHHHhcCCceEEEEccch
Confidence 1233567788888886 499999999999999999999974 3899999999999999999999999 99999999999
Q ss_pred ccccccCCCCcEEEEcCCCCCHhHHHHHhhccCc-CCCCCeEEEEeCcchHHHHHHHHHc----CCCccccccccccccc
Q 004567 373 SRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR-YNSGGRSVLFLTPTEMKMLEKLREA----KIPIHFTKANTKRLQP 447 (744)
Q Consensus 373 arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR-~g~~G~~il~l~~~e~~~l~~l~~~----~i~i~~~~~~~~~~~~ 447 (744)
+-|||+ .+|+.|||++.|.++..++||+||+|+ .|....++++.... .++++.+.-. .-.++.+.+..+.+..
T Consensus 315 ELGIDi-G~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r-~dllE~~vi~~~a~~g~le~~~i~~~~LDV 392 (814)
T COG1201 315 ELGIDI-GDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDR-DDLLECLVLADLALEGKLERIKIPKNPLDV 392 (814)
T ss_pred hhcccc-CCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCH-HHHHHHHHHHHHHHhCCcccCCCCCcchhH
Confidence 999999 899999999999999999999999996 45567777777663 3344333221 3445566777777777
Q ss_pred HHHHHHHHHhcC
Q 004567 448 VSGLLAALLVKY 459 (744)
Q Consensus 448 i~~~l~~~~~~~ 459 (744)
+.+++..++...
T Consensus 393 Laq~ivg~~~~~ 404 (814)
T COG1201 393 LAQQIVGMALEK 404 (814)
T ss_pred HHHHHHHHHhhC
Confidence 778877777665
No 51
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.9e-39 Score=380.26 Aligned_cols=317 Identities=21% Similarity=0.286 Sum_probs=239.6
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHcC------CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCCh
Q 004567 75 KKTKSGLKDAGFVKMTDIQRASLPHSLCG------RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTR 148 (744)
Q Consensus 75 ~~~~~~L~~~gf~~~t~iQ~~aip~il~g------~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~Ptr 148 (744)
..+...+...+| .||++|.+||+.++.+ .+.|++|+||||||++|++|++..+. .|.+++|++||+
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~-------~g~qvlilaPT~ 294 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE-------AGYQVALMAPTE 294 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH-------cCCcEEEECCHH
Confidence 344556778899 8999999999999976 36899999999999999999998873 467899999999
Q ss_pred HHHHHHHHHHHHhhccCCceEEEEEcCccChHH----HHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchh
Q 004567 149 ELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDM----EKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADR 224 (744)
Q Consensus 149 eLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~----e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~ 224 (744)
+||.|+++.+++++...++.+.+++|+...... .....+.++|+||||+.+.+ .+.+.++++|||||+|+
T Consensus 295 ~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~------~~~~~~l~lvVIDEaH~ 368 (630)
T TIGR00643 295 ILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE------KVEFKRLALVIIDEQHR 368 (630)
T ss_pred HHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc------cccccccceEEEechhh
Confidence 999999999999998889999999995433221 11123468999999998753 24568999999999998
Q ss_pred hhccchHHHHHHHHHhCC--CCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhHHHHH
Q 004567 225 ILDVGFKKALNAIVSQLP--KHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDML 302 (744)
Q Consensus 225 lld~gf~~~l~~Il~~lp--~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl~~L 302 (744)
+.... . ..+....+ ..+++++||||+.+....+......+...+. ... .....+...+ +.... ...+
T Consensus 369 fg~~q-r---~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~--~~p--~~r~~i~~~~--~~~~~-~~~~ 437 (630)
T TIGR00643 369 FGVEQ-R---KKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIID--ELP--PGRKPITTVL--IKHDE-KDIV 437 (630)
T ss_pred ccHHH-H---HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeec--cCC--CCCCceEEEE--eCcch-HHHH
Confidence 54321 1 22222222 2678999999976644333221111111111 100 0011222222 22222 2455
Q ss_pred HHHHHHh--CCCcEEEEecch--------HHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccc
Q 004567 303 WSFIKAH--LNSKILVFLTSC--------KQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 371 (744)
Q Consensus 303 ~~lLk~~--~~~k~IVF~~s~--------~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv 371 (744)
+..+... .+.+++|||+++ ..+..+++.|...++++.+..+||+|++.+|..+++.|++ +..|||||++
T Consensus 438 ~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~v 517 (630)
T TIGR00643 438 YEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTV 517 (630)
T ss_pred HHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECce
Confidence 6655543 367899999876 5677888888877788999999999999999999999999 9999999999
Q ss_pred cccccccCCCCcEEEEcCCCC-CHhHHHHHhhccCcCCCCCeEEEEe
Q 004567 372 ASRGLDFNKAVDWVVQVDCPE-DVASYIHRVGRTARYNSGGRSVLFL 417 (744)
Q Consensus 372 ~arGlDi~p~V~~VI~~d~P~-s~~~yiQRiGRagR~g~~G~~il~l 417 (744)
+++|||+ |++++||+++.|. +.+.|.||+||+||.|..|.|++++
T Consensus 518 ie~GvDi-P~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 518 IEVGVDV-PNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred eecCccc-CCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 9999999 9999999999986 6889999999999999999999999
No 52
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.3e-38 Score=389.88 Aligned_cols=344 Identities=19% Similarity=0.238 Sum_probs=241.1
Q ss_pred EEccCCCchhHHhHHHHHHHHHhccC------CCCCCceEEEEcCChHHHHHHHHHHHHhh------------ccCCceE
Q 004567 108 GAAKTGSGKTLAFVIPVLEKLYKERW------GPEDGVGSIIISPTRELADQLFDVLKAVG------------KHHNFSA 169 (744)
Q Consensus 108 v~a~TGSGKTla~llpil~~L~~~~~------~~~~g~~aLIl~PtreLa~Qi~~~l~~~~------------~~~~~~~ 169 (744)
++||||||||+||++|++..++.+.. ....+.++|||+|+++|+.|++..++... ...++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999999999986532 11346899999999999999999887521 1246888
Q ss_pred EEEEcCccChHHHHHh-cCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccc----hHHHHHHHHHhCCCC
Q 004567 170 GLLIGGRRDVDMEKEH-VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG----FKKALNAIVSQLPKH 244 (744)
Q Consensus 170 ~~l~Gg~~~~~~e~~~-~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~g----f~~~l~~Il~~lp~~ 244 (744)
+..+| ..+....... .+.++|||+||++|..++.+.....++++++|||||+|.|++.. +...+..|...++..
T Consensus 81 ~vrtG-Dt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~ 159 (1490)
T PRK09751 81 GIRTG-DTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTS 159 (1490)
T ss_pred EEEEC-CCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCC
Confidence 88998 5555444433 35799999999999887765433457999999999999999764 445566676777788
Q ss_pred CcEEEEeeccChhHHHHHHHhc-CCCccccccccccccCccccceeEEEcChhhH----------------HHHHH----
Q 004567 245 RQTFLFSATQTKSVQDLARLSL-KDPQYLSVHEESVTATPNRLQQTAMIVPLEQK----------------LDMLW---- 303 (744)
Q Consensus 245 ~q~ll~SAT~~~~v~~la~~~l-~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~k----------------l~~L~---- 303 (744)
.|+|+||||+++. ..++.... ..|..+ +.... ..+..+. .++.+..... ...++
T Consensus 160 ~QrIgLSATI~n~-eevA~~L~g~~pv~I-v~~~~--~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~ 234 (1490)
T PRK09751 160 AQRIGLSATVRSA-SDVAAFLGGDRPVTV-VNPPA--MRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIE 234 (1490)
T ss_pred CeEEEEEeeCCCH-HHHHHHhcCCCCEEE-ECCCC--CcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHH
Confidence 9999999999874 55554332 234333 21111 1111121 1111111000 01111
Q ss_pred -HHHHH-hCCCcEEEEecchHHHHHHHHHHHhhCC-------------------------------CCcEEEeeCCCCHH
Q 004567 304 -SFIKA-HLNSKILVFLTSCKQVKYVFEAFKKLRP-------------------------------GIPLMCLYGRMKQD 350 (744)
Q Consensus 304 -~lLk~-~~~~k~IVF~~s~~~v~~l~~~L~~l~~-------------------------------g~~v~~lhg~~~~~ 350 (744)
.++.. ....++||||||+..|+.++..|++... ...+..|||+|+++
T Consensus 235 ~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSke 314 (1490)
T PRK09751 235 TGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKE 314 (1490)
T ss_pred HHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHH
Confidence 12221 1257899999999999999999987521 12267899999999
Q ss_pred HHHHHHHHHhc-cCCeEEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcC-CCCCeEEEEeCcchHHHHHH-
Q 004567 351 RRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARY-NSGGRSVLFLTPTEMKMLEK- 427 (744)
Q Consensus 351 ~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~-g~~G~~il~l~~~e~~~l~~- 427 (744)
+|..+++.|++ ..+|||||+++++|||| ++|++|||++.|.++.+|+||+||+||. |..+.++++... ...+++.
T Consensus 315 eR~~IE~~fK~G~LrvLVATssLELGIDI-g~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~-r~dlle~~ 392 (1490)
T PRK09751 315 QRAITEQALKSGELRCVVATSSLELGIDM-GAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRT-RRDLVDSA 392 (1490)
T ss_pred HHHHHHHHHHhCCceEEEeCcHHHccCCc-ccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCc-HHHHHhhH
Confidence 99999999999 89999999999999999 9999999999999999999999999996 223444533332 2233321
Q ss_pred --HHHc-CCCcccccccccccccHHHHHHHHHhcC
Q 004567 428 --LREA-KIPIHFTKANTKRLQPVSGLLAALLVKY 459 (744)
Q Consensus 428 --l~~~-~i~i~~~~~~~~~~~~i~~~l~~~~~~~ 459 (744)
++.. .-.++.+....+.+.-+.+++..++...
T Consensus 393 ~~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~~~ 427 (1490)
T PRK09751 393 VIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAMD 427 (1490)
T ss_pred HHHHHHhcCCCCccCCCCChHHHHHHHHHHHHhcC
Confidence 1111 4455666666666666777777777654
No 53
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=4.9e-38 Score=364.57 Aligned_cols=312 Identities=17% Similarity=0.169 Sum_probs=232.1
Q ss_pred cHHHHHHHHHHHcCCCEEEEccCCCchhHH---------hHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHH
Q 004567 90 TDIQRASLPHSLCGRDILGAAKTGSGKTLA---------FVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKA 160 (744)
Q Consensus 90 t~iQ~~aip~il~g~dvlv~a~TGSGKTla---------~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~ 160 (744)
..+|.++++.+++|+++|++|+||||||.+ |++|.+..+.+-. ....+.+++|++|||+||.|+...+..
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~-~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID-PNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc-cccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 458999999999999999999999999997 4444554432110 112356899999999999999999877
Q ss_pred hhcc---CCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHH
Q 004567 161 VGKH---HNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAI 237 (744)
Q Consensus 161 ~~~~---~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~I 237 (744)
.... .+..+...+||. ............+|+|+|++.. ...+.++++|||||||.+..++ ..+..+
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~-~~~~~~t~~k~~~Ilv~T~~L~--------l~~L~~v~~VVIDEaHEr~~~~--DllL~l 313 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSI-PDELINTNPKPYGLVFSTHKLT--------LNKLFDYGTVIIDEVHEHDQIG--DIIIAV 313 (675)
T ss_pred HhCccccCCceEEEEECCc-chHHhhcccCCCCEEEEeCccc--------ccccccCCEEEccccccCccch--hHHHHH
Confidence 5544 345667788844 3222222334679999997631 1246889999999999988775 445555
Q ss_pred HHhC-CCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcCh---------hhHHHHHHHHHH
Q 004567 238 VSQL-PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPL---------EQKLDMLWSFIK 307 (744)
Q Consensus 238 l~~l-p~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~---------~~kl~~L~~lLk 307 (744)
+..+ +..+|+++||||++..+..+. .++.+|..+.+... +...+.+.|..... ......+...+.
T Consensus 314 lk~~~~~~rq~ILmSATl~~dv~~l~-~~~~~p~~I~I~gr----t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~ 388 (675)
T PHA02653 314 ARKHIDKIRSLFLMTATLEDDRDRIK-EFFPNPAFVHIPGG----TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALK 388 (675)
T ss_pred HHHhhhhcCEEEEEccCCcHhHHHHH-HHhcCCcEEEeCCC----cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHH
Confidence 5444 344699999999998887774 67788887776421 22345566553321 111122233333
Q ss_pred H---hCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHH-hc-cCCeEEEccccccccccCCCC
Q 004567 308 A---HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-CE-KRSVLFCTDVASRGLDFNKAV 382 (744)
Q Consensus 308 ~---~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F-~~-~~~VLVaTdv~arGlDi~p~V 382 (744)
. ...+++||||+++.+++.+++.|.+..+++.+..+||+|++. .++++.| ++ ..+||||||+++||||| |+|
T Consensus 389 ~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDI-p~V 465 (675)
T PHA02653 389 KYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTI-RNA 465 (675)
T ss_pred HhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccc-cCe
Confidence 2 124689999999999999999998866679999999999985 4666777 56 78999999999999999 999
Q ss_pred cEEEEcC---CCC---------CHhHHHHHhhccCcCCCCCeEEEEeCcchH
Q 004567 383 DWVVQVD---CPE---------DVASYIHRVGRTARYNSGGRSVLFLTPTEM 422 (744)
Q Consensus 383 ~~VI~~d---~P~---------s~~~yiQRiGRagR~g~~G~~il~l~~~e~ 422 (744)
++||++| .|. |.++|+||+|||||. ++|.|+.|+++.+.
T Consensus 466 ~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 466 THVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred eEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 9999998 565 889999999999999 78999999998764
No 54
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.1e-37 Score=369.38 Aligned_cols=304 Identities=21% Similarity=0.256 Sum_probs=238.4
Q ss_pred HHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHH-HhhccCCceEEEE
Q 004567 94 RASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLK-AVGKHHNFSAGLL 172 (744)
Q Consensus 94 ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~-~~~~~~~~~~~~l 172 (744)
.+.+..+..++++|++|+||||||++|.+|+++... .+.+++|+.|||++|.|++..+. .++...+..++..
T Consensus 8 ~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~ 80 (819)
T TIGR01970 8 PALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYR 80 (819)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEE
Confidence 445556667889999999999999999999998751 24589999999999999999875 4555556666666
Q ss_pred EcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCch-hhhccchHHHH-HHHHHhCCCCCcEEEE
Q 004567 173 IGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEAD-RILDVGFKKAL-NAIVSQLPKHRQTFLF 250 (744)
Q Consensus 173 ~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh-~lld~gf~~~l-~~Il~~lp~~~q~ll~ 250 (744)
+++. .......+|+|+|||+|++++...+ .++++++|||||+| ++++.+|...+ ..+...++...|+|+|
T Consensus 81 vr~~------~~~s~~t~I~v~T~G~Llr~l~~d~--~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlm 152 (819)
T TIGR01970 81 VRGE------NKVSRRTRLEVVTEGILTRMIQDDP--ELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAM 152 (819)
T ss_pred Eccc------cccCCCCcEEEECCcHHHHHHhhCc--ccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEE
Confidence 6522 1233468999999999999998753 56999999999999 68887765543 4566678888999999
Q ss_pred eeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhHH-----HHHHHHHHHhCCCcEEEEecchHHHH
Q 004567 251 SATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKL-----DMLWSFIKAHLNSKILVFLTSCKQVK 325 (744)
Q Consensus 251 SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl-----~~L~~lLk~~~~~k~IVF~~s~~~v~ 325 (744)
|||++... + ..++.++..+.+... ...+.++|..+....++ ..+..++.. ..+++||||+++.+++
T Consensus 153 SATl~~~~--l-~~~l~~~~vI~~~gr-----~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~ 223 (819)
T TIGR01970 153 SATLDGER--L-SSLLPDAPVVESEGR-----SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIR 223 (819)
T ss_pred eCCCCHHH--H-HHHcCCCcEEEecCc-----ceeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHH
Confidence 99999764 3 345555555543321 12355667666544443 233444433 3688999999999999
Q ss_pred HHHHHHHhhC-CCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCcEEEEcCCCC-----------
Q 004567 326 YVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPE----------- 392 (744)
Q Consensus 326 ~l~~~L~~l~-~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~P~----------- 392 (744)
.+++.|.... +++.++.+||+|++.+|..++..|.+ ..+||||||++++|||| |+|++||+++.|.
T Consensus 224 ~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItI-p~V~~VID~Gl~r~~~yd~~~g~~ 302 (819)
T TIGR01970 224 RVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTI-EGIRVVIDSGLARVARFDPKTGIT 302 (819)
T ss_pred HHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccc-cCceEEEEcCcccccccccccCCc
Confidence 9999998743 47899999999999999999999998 88999999999999999 9999999999874
Q ss_pred -------CHhHHHHHhhccCcCCCCCeEEEEeCcchHH
Q 004567 393 -------DVASYIHRVGRTARYNSGGRSVLFLTPTEMK 423 (744)
Q Consensus 393 -------s~~~yiQRiGRagR~g~~G~~il~l~~~e~~ 423 (744)
|.++|+||+|||||. .+|.|+.+++..+..
T Consensus 303 ~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 303 RLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred eeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 345799999999999 899999999987653
No 55
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=5.7e-38 Score=383.49 Aligned_cols=297 Identities=21% Similarity=0.247 Sum_probs=237.9
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhc
Q 004567 84 AGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGK 163 (744)
Q Consensus 84 ~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~ 163 (744)
.|+ .||++|+.++|.++.|+|++++||||||||+ |++|++..+. ..+.++|||+||++|+.|+++.++.++.
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~------~~g~~alIL~PTreLa~Qi~~~l~~l~~ 148 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLA------KKGKKSYIIFPTRLLVEQVVEKLEKFGE 148 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHH------hcCCeEEEEeccHHHHHHHHHHHHHHhh
Confidence 577 8999999999999999999999999999996 5666655442 2378899999999999999999999998
Q ss_pred cCCceEEEEEcCccC----hHHHHHh--cCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhc----------
Q 004567 164 HHNFSAGLLIGGRRD----VDMEKEH--VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILD---------- 227 (744)
Q Consensus 164 ~~~~~~~~l~Gg~~~----~~~e~~~--~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld---------- 227 (744)
..++.+..++|++.. ....... .+.++|+|+|||+|.+++. .+....+++|||||||++++
T Consensus 149 ~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~---~l~~~~~~~lVvDEaD~~L~~~k~id~~l~ 225 (1176)
T PRK09401 149 KVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD---ELPKKKFDFVFVDDVDAVLKSSKNIDKLLY 225 (1176)
T ss_pred hcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH---hccccccCEEEEEChHHhhhcccchhhHHH
Confidence 888888888874432 1111112 2469999999999999886 35556799999999999996
Q ss_pred -cchH-HHHHHHHHhCCC------------------------CCcEEEEeeccChh-HHHHHHHhcCCCccccccccccc
Q 004567 228 -VGFK-KALNAIVSQLPK------------------------HRQTFLFSATQTKS-VQDLARLSLKDPQYLSVHEESVT 280 (744)
Q Consensus 228 -~gf~-~~l~~Il~~lp~------------------------~~q~ll~SAT~~~~-v~~la~~~l~~p~~i~v~~~~~~ 280 (744)
+||. ..+..++..+|. .+|+++||||+++. +.. ..+.++..+.+... .
T Consensus 226 ~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~--~ 300 (1176)
T PRK09401 226 LLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSP--V 300 (1176)
T ss_pred hCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCc--c
Confidence 6885 678888877765 68999999999864 432 12233333433332 2
Q ss_pred cCccccceeEEEcChhhHHHHHHHHHHHhCCCcEEEEecchHH---HHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHH
Q 004567 281 ATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQ---VKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYA 357 (744)
Q Consensus 281 ~~~~~l~q~~~~~~~~~kl~~L~~lLk~~~~~k~IVF~~s~~~---v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~ 357 (744)
....++.+.|+.++ .+...|..+++.. +.++||||+++.. |+.+++.|+.. |+++..+||+| ...++
T Consensus 301 ~~~rnI~~~yi~~~--~k~~~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~--gi~v~~~hg~l-----~~~l~ 370 (1176)
T PRK09401 301 FYLRNIVDSYIVDE--DSVEKLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDL--GINAELAISGF-----ERKFE 370 (1176)
T ss_pred cccCCceEEEEEcc--cHHHHHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHC--CCcEEEEeCcH-----HHHHH
Confidence 34567788888776 5777888888765 5789999999887 99999999986 99999999999 22459
Q ss_pred HHhc-cCCeEEE----ccccccccccCCC-CcEEEEcCCCC------CHhHHHHHhhccCcC
Q 004567 358 QFCE-KRSVLFC----TDVASRGLDFNKA-VDWVVQVDCPE------DVASYIHRVGRTARY 407 (744)
Q Consensus 358 ~F~~-~~~VLVa----Tdv~arGlDi~p~-V~~VI~~d~P~------s~~~yiQRiGRagR~ 407 (744)
.|++ +.+|||| ||+++||||+ |+ |++|||||.|. ....|.||+||+...
T Consensus 371 ~F~~G~~~VLVatas~tdv~aRGIDi-P~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 371 KFEEGEVDVLVGVASYYGVLVRGIDL-PERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred HHHCCCCCEEEEecCCCCceeecCCC-CcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 9999 9999999 6999999999 88 89999999998 678999999999643
No 56
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.5e-37 Score=349.01 Aligned_cols=328 Identities=24% Similarity=0.374 Sum_probs=257.4
Q ss_pred HHHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHH
Q 004567 79 SGLKD-AGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDV 157 (744)
Q Consensus 79 ~~L~~-~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~ 157 (744)
..|+. +||..+++-|.++|..+++|+|+++..|||+||++||.+|++-. .| -+|||+|..+|...+.+.
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---------~G-~TLVVSPLiSLM~DQV~~ 76 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---------EG-LTLVVSPLISLMKDQVDQ 76 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---------CC-CEEEECchHHHHHHHHHH
Confidence 44554 69999999999999999999999999999999999999999843 34 489999999999988888
Q ss_pred HHHhhccCCceEEEEEcCccChHHHHH-----hcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccc--h
Q 004567 158 LKAVGKHHNFSAGLLIGGRRDVDMEKE-----HVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG--F 230 (744)
Q Consensus 158 l~~~~~~~~~~~~~l~Gg~~~~~~e~~-----~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~g--f 230 (744)
++..| +.+..+.+ .-+..+... ..+..++++-+|++|..--... .+.--.+.++||||||++.+|| |
T Consensus 77 l~~~G----i~A~~lnS-~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~-~L~~~~i~l~vIDEAHCiSqWGhdF 150 (590)
T COG0514 77 LEAAG----IRAAYLNS-TLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLE-LLKRLPISLVAIDEAHCISQWGHDF 150 (590)
T ss_pred HHHcC----ceeehhhc-ccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHH-HHHhCCCceEEechHHHHhhcCCcc
Confidence 88775 55555555 222222211 2235899999999975421111 1223578899999999999998 8
Q ss_pred HHHHHHH---HHhCCCCCcEEEEeeccChhHHHHHH--HhcCCCccccccccccccCccccceeEEEcChhhHHHHHHHH
Q 004567 231 KKALNAI---VSQLPKHRQTFLFSATQTKSVQDLAR--LSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSF 305 (744)
Q Consensus 231 ~~~l~~I---l~~lp~~~q~ll~SAT~~~~v~~la~--~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl~~L~~l 305 (744)
++.+..+ ...+| +..++++|||.++.+..-+. +.+..+..+.... .+-.-+|.+++...-...+. +
T Consensus 151 RP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sf-------dRpNi~~~v~~~~~~~~q~~-f 221 (590)
T COG0514 151 RPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSF-------DRPNLALKVVEKGEPSDQLA-F 221 (590)
T ss_pred CHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecC-------CCchhhhhhhhcccHHHHHH-H
Confidence 8777665 45565 78899999999999887544 4445553332221 22222333333221122222 5
Q ss_pred HH---HhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCC
Q 004567 306 IK---AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKA 381 (744)
Q Consensus 306 Lk---~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~ 381 (744)
|. .+.....||||.|++.|+.+++.|... |+.+..+||+|...+|..+.+.|.. +..|+|||.++++|||- |+
T Consensus 222 i~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~--g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdK-pd 298 (590)
T COG0514 222 LATVLPQLSKSGIIYCLTRKKVEELAEWLRKN--GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDK-PD 298 (590)
T ss_pred HHhhccccCCCeEEEEeeHHhHHHHHHHHHHC--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCC-CC
Confidence 54 455778999999999999999999986 9999999999999999999999999 99999999999999999 99
Q ss_pred CcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHHcCCC
Q 004567 382 VDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKIP 434 (744)
Q Consensus 382 V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~~~i~ 434 (744)
|+||||||.|.|++.|+|-+|||||.|....|++|+.+.+....+++.+..-+
T Consensus 299 VRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~~~ 351 (590)
T COG0514 299 VRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQSKP 351 (590)
T ss_pred ceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999888887665433
No 57
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=4.1e-37 Score=365.37 Aligned_cols=303 Identities=20% Similarity=0.268 Sum_probs=235.5
Q ss_pred HHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHH-hhccCCceEEEE
Q 004567 94 RASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKA-VGKHHNFSAGLL 172 (744)
Q Consensus 94 ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~-~~~~~~~~~~~l 172 (744)
.+.+..+.++++++++|+||||||++|.+|+++... .+.+++|+.|||++|.|++..+.. ++...+..++..
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~-------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~ 83 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG-------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYR 83 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC-------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEE
Confidence 345556667899999999999999999999987631 124799999999999999998854 556667778777
Q ss_pred EcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchh-hhccchHH-HHHHHHHhCCCCCcEEEE
Q 004567 173 IGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADR-ILDVGFKK-ALNAIVSQLPKHRQTFLF 250 (744)
Q Consensus 173 ~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~-lld~gf~~-~l~~Il~~lp~~~q~ll~ 250 (744)
+++... ......|+|+|||+|++++...+ .++++++|||||+|. .++.++.- .+..++..++...|+++|
T Consensus 84 vr~~~~------~~~~t~I~v~T~G~Llr~l~~d~--~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilm 155 (812)
T PRK11664 84 MRAESK------VGPNTRLEVVTEGILTRMIQRDP--ELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIM 155 (812)
T ss_pred ecCccc------cCCCCcEEEEChhHHHHHHhhCC--CcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEE
Confidence 773221 22356899999999999988754 569999999999995 55555432 234566778888999999
Q ss_pred eeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhHHH-----HHHHHHHHhCCCcEEEEecchHHHH
Q 004567 251 SATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLD-----MLWSFIKAHLNSKILVFLTSCKQVK 325 (744)
Q Consensus 251 SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl~-----~L~~lLk~~~~~k~IVF~~s~~~v~ 325 (744)
|||++.. .+ ..++.++.++.+... ...+.++|..++...++. .+..++.. ..+.+||||++..+++
T Consensus 156 SATl~~~--~l-~~~~~~~~~I~~~gr-----~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~ 226 (812)
T PRK11664 156 SATLDND--RL-QQLLPDAPVIVSEGR-----SFPVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQ 226 (812)
T ss_pred ecCCCHH--HH-HHhcCCCCEEEecCc-----cccceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHH
Confidence 9999865 23 345555555543321 123566676666555543 33444433 3689999999999999
Q ss_pred HHHHHHHhh-CCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCcEEEEcCCCC-----------
Q 004567 326 YVFEAFKKL-RPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPE----------- 392 (744)
Q Consensus 326 ~l~~~L~~l-~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~P~----------- 392 (744)
.+++.|... ..++.++.+||+|++.+|..++..|.+ ..+||||||++++|||| |+|++||+++.+.
T Consensus 227 ~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtI-p~V~~VID~Gl~r~~~yd~~~g~~ 305 (812)
T PRK11664 227 RVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTI-EGIRLVVDSGLERVARFDPKTGLT 305 (812)
T ss_pred HHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccc-cCceEEEECCCcccccccccCCcc
Confidence 999999873 247889999999999999999999998 88999999999999999 9999999988764
Q ss_pred -------CHhHHHHHhhccCcCCCCCeEEEEeCcchH
Q 004567 393 -------DVASYIHRVGRTARYNSGGRSVLFLTPTEM 422 (744)
Q Consensus 393 -------s~~~yiQRiGRagR~g~~G~~il~l~~~e~ 422 (744)
|.++|+||+|||||. ..|.|+.+++..+.
T Consensus 306 ~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 306 RLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred eeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 346899999999999 69999999997755
No 58
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.8e-36 Score=343.89 Aligned_cols=318 Identities=19% Similarity=0.221 Sum_probs=247.5
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhc
Q 004567 84 AGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGK 163 (744)
Q Consensus 84 ~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~ 163 (744)
.|. .||++|..++|.++.|+ |+.+.||+|||++|++|++.... .|.+++||+||++||.|.++.+..++.
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al-------~G~~v~VvTptreLA~qdae~~~~l~~ 169 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL-------AGLPVHVITVNDYLAERDAELMRPLYE 169 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh-------cCCeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 565 89999999999999998 99999999999999999998753 478899999999999999999999999
Q ss_pred cCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHH-HHHHhcCCC------------------------CCCCCceEEE
Q 004567 164 HHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRL-LQHMDETPN------------------------FDCSQLQILI 218 (744)
Q Consensus 164 ~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrL-l~~l~~~~~------------------------~~~~~l~~lV 218 (744)
.+++++++++|+ .+. .......+++|+|||...| ++.|..+-. .-.+.+.+.|
T Consensus 170 ~lGlsv~~i~gg-~~~-~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aI 247 (656)
T PRK12898 170 ALGLTVGCVVED-QSP-DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAI 247 (656)
T ss_pred hcCCEEEEEeCC-CCH-HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeE
Confidence 999999999994 443 3444556899999999887 444433311 1235678999
Q ss_pred EcCchhhh-cc-----------------chHHHHHHHHHhCCC-------------------------------------
Q 004567 219 LDEADRIL-DV-----------------GFKKALNAIVSQLPK------------------------------------- 243 (744)
Q Consensus 219 lDEAh~ll-d~-----------------gf~~~l~~Il~~lp~------------------------------------- 243 (744)
|||+|.++ |. .+...+..++..+..
T Consensus 248 vDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~ 327 (656)
T PRK12898 248 VDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGA 327 (656)
T ss_pred eecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccc
Confidence 99999442 11 011111111111100
Q ss_pred --------------------------------------------------------------------------------
Q 004567 244 -------------------------------------------------------------------------------- 243 (744)
Q Consensus 244 -------------------------------------------------------------------------------- 243 (744)
T Consensus 328 ~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~ 407 (656)
T PRK12898 328 VRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRR 407 (656)
T ss_pred hHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHh
Confidence
Q ss_pred CCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhHHHHHHHHHHHhC--CCcEEEEecch
Q 004567 244 HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHL--NSKILVFLTSC 321 (744)
Q Consensus 244 ~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl~~L~~lLk~~~--~~k~IVF~~s~ 321 (744)
...+.+||||.+.....+...+..++..|.+..... ....+.++.++...|...|..++.... +.++||||+|+
T Consensus 408 Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~----r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~ 483 (656)
T PRK12898 408 YLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQ----RRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSV 483 (656)
T ss_pred hHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCcc----ceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 013456899988877778777777766655443321 123445666778889999999997642 57899999999
Q ss_pred HHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCC---CCc-----EEEEcCCCC
Q 004567 322 KQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNK---AVD-----WVVQVDCPE 392 (744)
Q Consensus 322 ~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p---~V~-----~VI~~d~P~ 392 (744)
..++.++..|... |+++..|||++. .|...+..|.. ...|+||||+++||+|| + +|. +||++++|.
T Consensus 484 ~~se~L~~~L~~~--gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI-~l~~~V~~~GGLhVI~~d~P~ 558 (656)
T PRK12898 484 AASERLSALLREA--GLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDI-KLEPGVAARGGLHVILTERHD 558 (656)
T ss_pred HHHHHHHHHHHHC--CCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCc-CCccchhhcCCCEEEEcCCCC
Confidence 9999999999986 999999999865 45555666666 67899999999999999 7 665 999999999
Q ss_pred CHhHHHHHhhccCcCCCCCeEEEEeCcchH
Q 004567 393 DVASYIHRVGRTARYNSGGRSVLFLTPTEM 422 (744)
Q Consensus 393 s~~~yiQRiGRagR~g~~G~~il~l~~~e~ 422 (744)
+...|+||+|||||.|..|.++.|++..+.
T Consensus 559 s~r~y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 559 SARIDRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred CHHHHHHhcccccCCCCCeEEEEEechhHH
Confidence 999999999999999999999999998665
No 59
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.8e-36 Score=377.29 Aligned_cols=330 Identities=17% Similarity=0.184 Sum_probs=253.7
Q ss_pred HHHHHHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHH
Q 004567 76 KTKSGLKD-AGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQL 154 (744)
Q Consensus 76 ~~~~~L~~-~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi 154 (744)
...+.+++ .|| .||++|+.+||.+++|+|++++||||||||++++++++... ..|.++|||+||++|+.|+
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~-------~~g~~aLVl~PTreLa~Qi 138 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA-------LKGKKCYIILPTTLLVKQT 138 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH-------hcCCeEEEEECHHHHHHHH
Confidence 34455555 899 79999999999999999999999999999997666655432 2467899999999999999
Q ss_pred HHHHHHhhccCC--ceEEEEEcCccChHHHHH-----hcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhc
Q 004567 155 FDVLKAVGKHHN--FSAGLLIGGRRDVDMEKE-----HVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILD 227 (744)
Q Consensus 155 ~~~l~~~~~~~~--~~~~~l~Gg~~~~~~e~~-----~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld 227 (744)
++.++.++...+ +.+..++| +.+...... ..+.++|+|+||++|.+++... .. .++++|||||||+|++
T Consensus 139 ~~~l~~l~~~~~~~v~v~~~~g-~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~-~~i~~iVVDEAD~ml~ 214 (1638)
T PRK14701 139 VEKIESFCEKANLDVRLVYYHS-NLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KH-LKFDFIFVDDVDAFLK 214 (1638)
T ss_pred HHHHHHHHhhcCCceeEEEEeC-CCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hh-CCCCEEEEECceeccc
Confidence 999999987654 45566777 444333221 1235999999999998877642 22 6799999999999986
Q ss_pred -----------cchHHHHHH----HHH----------------------hCCCCCc-EEEEeeccChhHHHHHHHhcCCC
Q 004567 228 -----------VGFKKALNA----IVS----------------------QLPKHRQ-TFLFSATQTKSVQDLARLSLKDP 269 (744)
Q Consensus 228 -----------~gf~~~l~~----Il~----------------------~lp~~~q-~ll~SAT~~~~v~~la~~~l~~p 269 (744)
+||...+.. |+. .+|+.+| +++||||++.... .. ..+.++
T Consensus 215 ~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~-~~-~l~~~~ 292 (1638)
T PRK14701 215 ASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD-RV-KLYREL 292 (1638)
T ss_pred cccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH-HH-HHhhcC
Confidence 588877764 332 3455666 5779999986311 11 223555
Q ss_pred ccccccccccccCccccceeEEEcChhhHHHHHHHHHHHhCCCcEEEEecchHH---HHHHHHHHHhhCCCCcEEEeeCC
Q 004567 270 QYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQ---VKYVFEAFKKLRPGIPLMCLYGR 346 (744)
Q Consensus 270 ~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl~~L~~lLk~~~~~k~IVF~~s~~~---v~~l~~~L~~l~~g~~v~~lhg~ 346 (744)
..+.+... .....++.+.|+.+....+ ..|..+++.. +..+||||+|++. |+.+++.|... |+++..+||+
T Consensus 293 l~f~v~~~--~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~--Gi~a~~~h~~ 366 (1638)
T PRK14701 293 LGFEVGSG--RSALRNIVDVYLNPEKIIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLED--GFKIELVSAK 366 (1638)
T ss_pred eEEEecCC--CCCCCCcEEEEEECCHHHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHC--CCeEEEecch
Confidence 55555433 2455677888887765555 5788888776 6789999999876 48999999885 9999999995
Q ss_pred CCHHHHHHHHHHHhc-cCCeEEEc----cccccccccCCC-CcEEEEcCCCC---CHhHHHHHh-------------hcc
Q 004567 347 MKQDRRMAIYAQFCE-KRSVLFCT----DVASRGLDFNKA-VDWVVQVDCPE---DVASYIHRV-------------GRT 404 (744)
Q Consensus 347 ~~~~~R~~i~~~F~~-~~~VLVaT----dv~arGlDi~p~-V~~VI~~d~P~---s~~~yiQRi-------------GRa 404 (744)
|..+++.|.+ +..||||| ++++||||+ |+ |++|||||+|. +...|.|-. ||+
T Consensus 367 -----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDi-P~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a 440 (1638)
T PRK14701 367 -----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDL-PERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEE 440 (1638)
T ss_pred -----HHHHHHHHHcCCCCEEEEecCCCCeeEecCcc-CCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhh
Confidence 8899999999 99999999 599999999 87 99999999999 888777765 999
Q ss_pred CcCCCCCeEEEEeCcchHHHHHHHHHc
Q 004567 405 ARYNSGGRSVLFLTPTEMKMLEKLREA 431 (744)
Q Consensus 405 gR~g~~G~~il~l~~~e~~~l~~l~~~ 431 (744)
||.|..+.+++.+.+....+++.+...
T Consensus 441 ~~~g~~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 441 LKEGIPIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred cccCCcchhHHHhHHHHHHHHHHHhcc
Confidence 999988888766666666666665444
No 60
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=1.9e-36 Score=333.16 Aligned_cols=299 Identities=19% Similarity=0.212 Sum_probs=210.8
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccC------
Q 004567 105 DILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRD------ 178 (744)
Q Consensus 105 dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~------ 178 (744)
+++++||||||||++|++|++..+.. ..+.+++|++|+++|+.|+++.+..++.. .++.++|+...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~-----~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~ 72 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS-----QKADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEM 72 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh-----CCCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhcc
Confidence 68999999999999999999987643 24568999999999999999999987432 34444442110
Q ss_pred -----hHHHHH-------hcCCCcEEEEChHHHHHHHhcCCC---CCCC--CceEEEEcCchhhhccchHHHHHHHHHhC
Q 004567 179 -----VDMEKE-------HVNELNILVCTPGRLLQHMDETPN---FDCS--QLQILILDEADRILDVGFKKALNAIVSQL 241 (744)
Q Consensus 179 -----~~~e~~-------~~~~~~IlV~TPgrLl~~l~~~~~---~~~~--~l~~lVlDEAh~lld~gf~~~l~~Il~~l 241 (744)
...... .....+|+|+||++++..+..... +.+. ..++|||||||++.+.++.. +..++..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l 151 (358)
T TIGR01587 73 GDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVL 151 (358)
T ss_pred CCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHH
Confidence 000000 112467999999999887765211 1111 23789999999999876544 55555555
Q ss_pred C-CCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEc--ChhhHHHHHHHHHHHh-CCCcEEEE
Q 004567 242 P-KHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIV--PLEQKLDMLWSFIKAH-LNSKILVF 317 (744)
Q Consensus 242 p-~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~--~~~~kl~~L~~lLk~~-~~~k~IVF 317 (744)
+ ...|+++||||+|..+..++......+......... ......+.+..+ ....+...+..++... .+.++|||
T Consensus 152 ~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf 228 (358)
T TIGR01587 152 KDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKE---ERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAII 228 (358)
T ss_pred HHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcc---ccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEE
Confidence 4 468999999999987776665443322111111000 000112222211 2223455566666542 36899999
Q ss_pred ecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHH----HHHHhc-cCCeEEEccccccccccCCCCcEEEEcCCCC
Q 004567 318 LTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAI----YAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPE 392 (744)
Q Consensus 318 ~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i----~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~P~ 392 (744)
|+|++.|+.++..|.+..+...+..+||++++.+|..+ ++.|++ ...|||||+++++|+|| + +++||++..|
T Consensus 229 ~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi-~-~~~vi~~~~~- 305 (358)
T TIGR01587 229 VNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDI-S-ADVMITELAP- 305 (358)
T ss_pred ECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceecc-C-CCEEEEcCCC-
Confidence 99999999999999887555679999999999999764 888998 88999999999999999 6 8999998877
Q ss_pred CHhHHHHHhhccCcCCCC----CeEEEEeCc
Q 004567 393 DVASYIHRVGRTARYNSG----GRSVLFLTP 419 (744)
Q Consensus 393 s~~~yiQRiGRagR~g~~----G~~il~l~~ 419 (744)
+++|+||+||+||.|+. |..++|...
T Consensus 306 -~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~ 335 (358)
T TIGR01587 306 -IDSLIQRLGRLHRYGRKNGENFEVYIITIA 335 (358)
T ss_pred -HHHHHHHhccccCCCCCCCCCCeEEEEeec
Confidence 78999999999999864 356666543
No 61
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=3.8e-35 Score=359.16 Aligned_cols=288 Identities=20% Similarity=0.257 Sum_probs=219.5
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHH
Q 004567 77 TKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFD 156 (744)
Q Consensus 77 ~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~ 156 (744)
..+.+.......||++|+.++|.++.|+|++++||||||||+ |.+|++..+.. .+.++|||+||++||.|+++
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~------~g~~vLIL~PTreLa~Qi~~ 139 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK------KGKRCYIILPTTLLVIQVAE 139 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh------cCCeEEEEeCHHHHHHHHHH
Confidence 344455544448999999999999999999999999999997 67777665532 36789999999999999999
Q ss_pred HHHHhhccCCceEE---EEEcCccChHHHH---H--hcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhc-
Q 004567 157 VLKAVGKHHNFSAG---LLIGGRRDVDMEK---E--HVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILD- 227 (744)
Q Consensus 157 ~l~~~~~~~~~~~~---~l~Gg~~~~~~e~---~--~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld- 227 (744)
.++.++...++.+. .++| +.+..... . ..++++|+|+||++|.+++... .. +++++||||||+|++
T Consensus 140 ~l~~l~~~~~i~~~~i~~~~G-g~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l---~~-~~~~iVvDEaD~~L~~ 214 (1171)
T TIGR01054 140 KISSLAEKAGVGTVNIGAYHS-RLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL---GP-KFDFIFVDDVDALLKA 214 (1171)
T ss_pred HHHHHHHhcCCceeeeeeecC-CCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh---cC-CCCEEEEeChHhhhhc
Confidence 99999987665543 4556 44433221 1 1245999999999999988752 22 899999999999998
Q ss_pred ----------cchHHH-HHHH----------------------HHhCCCCCc--EEEEeec-cChhHHHHHHHhcCCCcc
Q 004567 228 ----------VGFKKA-LNAI----------------------VSQLPKHRQ--TFLFSAT-QTKSVQDLARLSLKDPQY 271 (744)
Q Consensus 228 ----------~gf~~~-l~~I----------------------l~~lp~~~q--~ll~SAT-~~~~v~~la~~~l~~p~~ 271 (744)
+||... +..+ +..+|..+| +++|||| .|..+.. ..+.++..
T Consensus 215 ~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~ 291 (1171)
T TIGR01054 215 SKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLG 291 (1171)
T ss_pred cccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccc
Confidence 678763 4443 334556666 5679999 5655432 23444444
Q ss_pred ccccccccccCccccceeEEEcChhhHHHHHHHHHHHhCCCcEEEEecch---HHHHHHHHHHHhhCCCCcEEEeeCCCC
Q 004567 272 LSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSC---KQVKYVFEAFKKLRPGIPLMCLYGRMK 348 (744)
Q Consensus 272 i~v~~~~~~~~~~~l~q~~~~~~~~~kl~~L~~lLk~~~~~k~IVF~~s~---~~v~~l~~~L~~l~~g~~v~~lhg~~~ 348 (744)
+.+... .....++.+.|..+.. +...|..+++.. +.++||||+|+ +.|+.++..|... |+++..+||+++
T Consensus 292 ~~v~~~--~~~~r~I~~~~~~~~~--~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~--g~~a~~lhg~~~ 364 (1171)
T TIGR01054 292 FEVGGG--SDTLRNVVDVYVEDED--LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENH--GVKAVAYHATKP 364 (1171)
T ss_pred eEecCc--cccccceEEEEEeccc--HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhC--CceEEEEeCCCC
Confidence 444333 2345667788775553 245677777664 57899999999 9999999999885 899999999997
Q ss_pred HHHHHHHHHHHhc-cCCeEEE----ccccccccccCCC-CcEEEEcCCC
Q 004567 349 QDRRMAIYAQFCE-KRSVLFC----TDVASRGLDFNKA-VDWVVQVDCP 391 (744)
Q Consensus 349 ~~~R~~i~~~F~~-~~~VLVa----Tdv~arGlDi~p~-V~~VI~~d~P 391 (744)
+ .+++.|++ +..|||| ||+++||||+ |+ |++|||||+|
T Consensus 365 ~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDi-p~~V~~vI~~~~P 408 (1171)
T TIGR01054 365 K----EDYEKFAEGEIDVLIGVASYYGTLVRGLDL-PERVRYAVFLGVP 408 (1171)
T ss_pred H----HHHHHHHcCCCCEEEEeccccCcccccCCC-CccccEEEEECCC
Confidence 3 68999999 9999999 5999999999 88 8999998887
No 62
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=4.4e-35 Score=335.16 Aligned_cols=308 Identities=15% Similarity=0.169 Sum_probs=219.7
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccC
Q 004567 86 FVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH 165 (744)
Q Consensus 86 f~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~ 165 (744)
...|+++|.+|++.++.+++.++++|||+|||+++...+ ..+... ...++|||+||++|+.||.+.++.++...
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~~-----~~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLEN-----YEGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHhc-----CCCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 458999999999999999999999999999999754322 222221 23479999999999999999999987544
Q ss_pred CceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHhCCCCC
Q 004567 166 NFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHR 245 (744)
Q Consensus 166 ~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~ 245 (744)
...+..+.+|.... ...+|+|+||+++.+.... .+.++++||+||||++... .+..++..+++.+
T Consensus 186 ~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~~----~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~ 250 (501)
T PHA02558 186 REAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPKE----WFDQFGMVIVDECHLFTGK----SLTSIITKLDNCK 250 (501)
T ss_pred ccceeEEecCcccC-------CCCCEEEeeHHHHhhchhh----hccccCEEEEEchhcccch----hHHHHHHhhhccc
Confidence 44454555533221 3579999999999765422 2478999999999998754 4566777777778
Q ss_pred cEEEEeeccChhHHHHHH-HhcCCCccccccccccc----------------cCccc--------cceeE-EEcChhhHH
Q 004567 246 QTFLFSATQTKSVQDLAR-LSLKDPQYLSVHEESVT----------------ATPNR--------LQQTA-MIVPLEQKL 299 (744)
Q Consensus 246 q~ll~SAT~~~~v~~la~-~~l~~p~~i~v~~~~~~----------------~~~~~--------l~q~~-~~~~~~~kl 299 (744)
++++||||+......... ..+..|....+...... .+... ....+ ..+....+.
T Consensus 251 ~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn 330 (501)
T PHA02558 251 FKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRN 330 (501)
T ss_pred eEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHH
Confidence 999999998754321111 11111221111100000 00000 00000 011122233
Q ss_pred HHHHHHHHH--hCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEc-cccccc
Q 004567 300 DMLWSFIKA--HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT-DVASRG 375 (744)
Q Consensus 300 ~~L~~lLk~--~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaT-dv~arG 375 (744)
..+..++.. ..+.++||||.+.++++.+++.|... +.++..+||+|++.+|..+++.|++ ...||||| +++++|
T Consensus 331 ~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~--g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG 408 (501)
T PHA02558 331 KWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKV--YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTG 408 (501)
T ss_pred HHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHc--CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccc
Confidence 333444332 23578999999999999999999985 8899999999999999999999998 77899998 999999
Q ss_pred cccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEe
Q 004567 376 LDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFL 417 (744)
Q Consensus 376 lDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l 417 (744)
+|+ |++++||++.++.+...|+||+||++|.+..+...+++
T Consensus 409 ~Di-p~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 409 ISI-KNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred ccc-ccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 999 99999999999999999999999999998765444443
No 63
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=5.3e-35 Score=340.99 Aligned_cols=325 Identities=22% Similarity=0.278 Sum_probs=235.1
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhc
Q 004567 84 AGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGK 163 (744)
Q Consensus 84 ~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~ 163 (744)
.|. .|+++|..+++.+++|+ |+.+.||+|||++|++|++.... .|.+++|++||++||.|.++.+..+..
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al-------~G~~v~VvTpt~~LA~qd~e~~~~l~~ 144 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL-------EGKGVHLITVNDYLAKRDAEEMGQVYE 144 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH-------cCCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 576 89999999999998886 99999999999999999985543 478899999999999999999999999
Q ss_pred cCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHH-HHHHhcCC-----CCCCCCceEEEEcCchhhh-cc--------
Q 004567 164 HHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRL-LQHMDETP-----NFDCSQLQILILDEADRIL-DV-------- 228 (744)
Q Consensus 164 ~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrL-l~~l~~~~-----~~~~~~l~~lVlDEAh~ll-d~-------- 228 (744)
.+++++++++| +.+...+......++|+||||++| .++|...- ....+.+.++||||||+|+ |.
T Consensus 145 ~lGl~v~~i~g-~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliis 223 (790)
T PRK09200 145 FLGLTVGLNFS-DIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIIS 223 (790)
T ss_pred hcCCeEEEEeC-CCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeee
Confidence 99999999999 555334444556799999999998 45444321 1345889999999999765 22
Q ss_pred -------chHHHHHHHHHhCCCC--------CcEEEEeec--------------cChh-------HHH-H-HH-HhcCCC
Q 004567 229 -------GFKKALNAIVSQLPKH--------RQTFLFSAT--------------QTKS-------VQD-L-AR-LSLKDP 269 (744)
Q Consensus 229 -------gf~~~l~~Il~~lp~~--------~q~ll~SAT--------------~~~~-------v~~-l-a~-~~l~~p 269 (744)
.+...+..++..+... .+.+.++.. .... +.. + |. ++-.+-
T Consensus 224 g~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~ 303 (790)
T PRK09200 224 GKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDV 303 (790)
T ss_pred CCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCC
Confidence 1333444455444321 111211111 0000 000 0 00 011111
Q ss_pred cccccc-------c------------------------------------------------------------------
Q 004567 270 QYLSVH-------E------------------------------------------------------------------ 276 (744)
Q Consensus 270 ~~i~v~-------~------------------------------------------------------------------ 276 (744)
.|+... .
T Consensus 304 dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~ 383 (790)
T PRK09200 304 DYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEV 383 (790)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHH
Confidence 111100 0
Q ss_pred --cccccCccc-----c-ceeEEEcChhhHHHHHHHHHHH--hCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCC
Q 004567 277 --ESVTATPNR-----L-QQTAMIVPLEQKLDMLWSFIKA--HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGR 346 (744)
Q Consensus 277 --~~~~~~~~~-----l-~q~~~~~~~~~kl~~L~~lLk~--~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~ 346 (744)
-.+...|.+ . ....+.+....|...|...+.. ....++||||+|+..++.++..|... |+++..+||.
T Consensus 384 Y~l~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~--gi~~~~L~~~ 461 (790)
T PRK09200 384 YNMEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEA--GIPHNLLNAK 461 (790)
T ss_pred hCCcEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC--CCCEEEecCC
Confidence 000001111 0 1123445667789999888865 34789999999999999999999986 9999999999
Q ss_pred CCHHHHHHHHHHHhccCCeEEEccccccccccC--CCCc-----EEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCc
Q 004567 347 MKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFN--KAVD-----WVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTP 419 (744)
Q Consensus 347 ~~~~~R~~i~~~F~~~~~VLVaTdv~arGlDi~--p~V~-----~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~ 419 (744)
+.+.++..+...+. ...|+||||+++||+||. |+|. +||++++|.+...|+||+|||||.|.+|.++.|++.
T Consensus 462 ~~~~e~~~i~~ag~-~g~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~ 540 (790)
T PRK09200 462 NAAKEAQIIAEAGQ-KGAVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISL 540 (790)
T ss_pred ccHHHHHHHHHcCC-CCeEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcc
Confidence 99887776655544 458999999999999993 4788 999999999999999999999999999999999998
Q ss_pred chH
Q 004567 420 TEM 422 (744)
Q Consensus 420 ~e~ 422 (744)
.+.
T Consensus 541 eD~ 543 (790)
T PRK09200 541 EDD 543 (790)
T ss_pred hHH
Confidence 665
No 64
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=4.6e-36 Score=314.29 Aligned_cols=278 Identities=26% Similarity=0.432 Sum_probs=217.0
Q ss_pred ceEEEEcCChHHHHHHHHHHHHhhccC---CceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCce
Q 004567 139 VGSIIISPTRELADQLFDVLKAVGKHH---NFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQ 215 (744)
Q Consensus 139 ~~aLIl~PtreLa~Qi~~~l~~~~~~~---~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~ 215 (744)
+.+||+-|+|||+.|++..+.+|-.+. .+...+++||.....+......+.+|+|+|||||++.+... .+.++...
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g-~~~lt~cr 365 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKG-LVTLTHCR 365 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhcc-ceeeeeeE
Confidence 568999999999999999887775443 34555777755555555556678999999999999988765 66788999
Q ss_pred EEEEcCchhhhccchHHHHHHHHHhCCC------CCcEEEEeeccCh-hHHHHHHHhcCCCccccccccccccCccccce
Q 004567 216 ILILDEADRILDVGFKKALNAIVSQLPK------HRQTFLFSATQTK-SVQDLARLSLKDPQYLSVHEESVTATPNRLQQ 288 (744)
Q Consensus 216 ~lVlDEAh~lld~gf~~~l~~Il~~lp~------~~q~ll~SAT~~~-~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q 288 (744)
++|+||||.++..|+...+..+..++|. ..|.+++|||+.. ++..+....+.-|..+....++ ..|....+
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD--~vpetvHh 443 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGED--LVPETVHH 443 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEeccccc--ccchhhcc
Confidence 9999999999999999999999888874 4689999999754 3455565666666666554332 12222222
Q ss_pred eEEEcChh----------------------------------hH-----HHHHHHHHHHhCCCcEEEEecchHHHHHHHH
Q 004567 289 TAMIVPLE----------------------------------QK-----LDMLWSFIKAHLNSKILVFLTSCKQVKYVFE 329 (744)
Q Consensus 289 ~~~~~~~~----------------------------------~k-----l~~L~~lLk~~~~~k~IVF~~s~~~v~~l~~ 329 (744)
.+..+... .. -+.-...++.|.-.++||||.|...|+.+..
T Consensus 444 vv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 444 VVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred ceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHH
Confidence 22111100 00 0112234455667899999999999999999
Q ss_pred HHHhhC-CCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcC
Q 004567 330 AFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARY 407 (744)
Q Consensus 330 ~L~~l~-~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~ 407 (744)
++++.. ..++++++||+..+.+|.+.++.|+. ..++|||||+++||||| .++.++|++-.|.+...|+||+||+||+
T Consensus 524 ~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi-~g~p~~invtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 524 MMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDI-TGLPFMINVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred HHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccc-cCCceEEEEecCcccchhhhhhhccchh
Confidence 998853 24789999999999999999999999 99999999999999999 9999999999999999999999999999
Q ss_pred CCCCeEEEEeCcc
Q 004567 408 NSGGRSVLFLTPT 420 (744)
Q Consensus 408 g~~G~~il~l~~~ 420 (744)
.+-|.+|.++...
T Consensus 603 ermglaislvat~ 615 (725)
T KOG0349|consen 603 ERMGLAISLVATV 615 (725)
T ss_pred hhcceeEEEeecc
Confidence 9999999887543
No 65
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=6.5e-34 Score=328.99 Aligned_cols=324 Identities=20% Similarity=0.237 Sum_probs=224.4
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhc
Q 004567 84 AGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGK 163 (744)
Q Consensus 84 ~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~ 163 (744)
.|. .|+++|..+...+. +..|+.++||+|||++|++|++.... .|.+++||+|+++||.|+++.+..+..
T Consensus 67 lgl-rpydVQlig~l~l~--~G~Iaem~TGeGKTLta~Lpa~l~aL-------~g~~V~VVTpn~yLA~Rdae~m~~l~~ 136 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVLH--QGNIAEMKTGEGKTLTATMPLYLNAL-------TGKGAMLVTTNDYLAKRDAEEMGPVYE 136 (762)
T ss_pred cCC-CccHHHHHHHHHhc--CCceeEecCCcchHHHHHHHHHHHhh-------cCCceEEeCCCHHHHHHHHHHHHHHHh
Confidence 454 56666655555544 44799999999999999999876653 356799999999999999999999999
Q ss_pred cCCceEEEEEcCccC--hH-HHHHhcCCCcEEEEChHHH-HHHHhcC-----CCCCCCCceEEEEcCchhhhc-cc----
Q 004567 164 HHNFSAGLLIGGRRD--VD-MEKEHVNELNILVCTPGRL-LQHMDET-----PNFDCSQLQILILDEADRILD-VG---- 229 (744)
Q Consensus 164 ~~~~~~~~l~Gg~~~--~~-~e~~~~~~~~IlV~TPgrL-l~~l~~~-----~~~~~~~l~~lVlDEAh~lld-~g---- 229 (744)
.+++++++++++... .. .......+++|+||||++| .+.+... ..+.++.+.++|+||||.|+- ..
T Consensus 137 ~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpl 216 (762)
T TIGR03714 137 WLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPL 216 (762)
T ss_pred hcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCe
Confidence 999999988874221 22 2333446899999999999 4544321 134467899999999998752 21
Q ss_pred -----------hHHHHHHHHHhCCCC--------CcEEEEeecc-------------C-hh-------HHH-H-H-HHhc
Q 004567 230 -----------FKKALNAIVSQLPKH--------RQTFLFSATQ-------------T-KS-------VQD-L-A-RLSL 266 (744)
Q Consensus 230 -----------f~~~l~~Il~~lp~~--------~q~ll~SAT~-------------~-~~-------v~~-l-a-~~~l 266 (744)
+...+..++..+... .+.+.++-.- . .. +.. + | .++.
T Consensus 217 iisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~ 296 (762)
T TIGR03714 217 VISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFK 296 (762)
T ss_pred eeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHh
Confidence 334444555554331 1122222110 0 00 000 0 0 0111
Q ss_pred CCCccccc-------cc---------------------------------------------------------------
Q 004567 267 KDPQYLSV-------HE--------------------------------------------------------------- 276 (744)
Q Consensus 267 ~~p~~i~v-------~~--------------------------------------------------------------- 276 (744)
++-.|+.. +.
T Consensus 297 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef 376 (762)
T TIGR03714 297 RNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEF 376 (762)
T ss_pred cCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHH
Confidence 12222210 00
Q ss_pred -----cccccCcccc------ceeEEEcChhhHHHHHHHHHHH--hCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEe
Q 004567 277 -----ESVTATPNRL------QQTAMIVPLEQKLDMLWSFIKA--HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCL 343 (744)
Q Consensus 277 -----~~~~~~~~~l------~q~~~~~~~~~kl~~L~~lLk~--~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~l 343 (744)
-.+...|.+. ..-.+.+....|..++...+.. ..+.++||||+|+..++.+...|... |+++..+
T Consensus 377 ~~iY~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~--gi~~~~L 454 (762)
T TIGR03714 377 IETYSLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLRE--GIPHNLL 454 (762)
T ss_pred HHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHC--CCCEEEe
Confidence 0000011110 1123445567789999988865 34789999999999999999999986 9999999
Q ss_pred eCCCCHHHHHHHHHHHhccCCeEEEccccccccccCC---------CCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEE
Q 004567 344 YGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFNK---------AVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSV 414 (744)
Q Consensus 344 hg~~~~~~R~~i~~~F~~~~~VLVaTdv~arGlDi~p---------~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~i 414 (744)
||.+.+.+|..+...|. ...|+||||+++||+|| + ++.+|+++++|..... +||+|||||.|.+|.++
T Consensus 455 ~a~~~~~E~~ii~~ag~-~g~VlIATdmAgRGtDI-~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~ 531 (762)
T TIGR03714 455 NAQNAAKEAQIIAEAGQ-KGAVTVATSMAGRGTDI-KLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQ 531 (762)
T ss_pred cCCChHHHHHHHHHcCC-CCeEEEEccccccccCC-CCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEE
Confidence 99999888766655443 45799999999999999 8 8999999999987766 99999999999999999
Q ss_pred EEeCcchH
Q 004567 415 LFLTPTEM 422 (744)
Q Consensus 415 l~l~~~e~ 422 (744)
.|++..+.
T Consensus 532 ~~is~eD~ 539 (762)
T TIGR03714 532 FFVSLEDD 539 (762)
T ss_pred EEEccchh
Confidence 99998665
No 66
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=4.7e-34 Score=308.64 Aligned_cols=334 Identities=19% Similarity=0.265 Sum_probs=268.9
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEE
Q 004567 66 TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPH-SLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIII 144 (744)
Q Consensus 66 ~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~-il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl 144 (744)
...++|++++.....|+..|+..+.|+|..|+.. ++.|.|.+++++|+|||||+.-++-+..++. .|.+.|++
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~------~g~KmlfL 267 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS------GGKKMLFL 267 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh------CCCeEEEE
Confidence 4578899999999999999999999999999965 7789999999999999999998888888764 37889999
Q ss_pred cCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHH-----HhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEE
Q 004567 145 SPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEK-----EHVNELNILVCTPGRLLQHMDETPNFDCSQLQILIL 219 (744)
Q Consensus 145 ~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~-----~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVl 219 (744)
+|..+||+|-++.|+.-...+++.+.+-+| ...++... ......+|||+|++-+-.+++.. -.+.++..+||
T Consensus 268 vPLVALANQKy~dF~~rYs~LglkvairVG-~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg--~~lgdiGtVVI 344 (830)
T COG1202 268 VPLVALANQKYEDFKERYSKLGLKVAIRVG-MSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG--KDLGDIGTVVI 344 (830)
T ss_pred ehhHHhhcchHHHHHHHhhcccceEEEEec-hhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC--CcccccceEEe
Confidence 999999999999999877888888888887 33222221 12246899999999996666554 45689999999
Q ss_pred cCchhhhccchHHHHHHHH---HhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcC-h
Q 004567 220 DEADRILDVGFKKALNAIV---SQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP-L 295 (744)
Q Consensus 220 DEAh~lld~gf~~~l~~Il---~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~-~ 295 (744)
||+|.+-+...+..+.-++ .++-+..|++.+|||..+.-. ++...-..+..+ ...|-.+..+.+.+. .
T Consensus 345 DEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~e-lA~~l~a~lV~y-------~~RPVplErHlvf~~~e 416 (830)
T COG1202 345 DEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEE-LAKKLGAKLVLY-------DERPVPLERHLVFARNE 416 (830)
T ss_pred eeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChHH-HHHHhCCeeEee-------cCCCCChhHeeeeecCc
Confidence 9999988866555555554 445568999999999987644 444332222222 123445555666665 6
Q ss_pred hhHHHHHHHHHHHhC--------CCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeE
Q 004567 296 EQKLDMLWSFIKAHL--------NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVL 366 (744)
Q Consensus 296 ~~kl~~L~~lLk~~~--------~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VL 366 (744)
..|.+.+..+.+... .+++|||++|+..|+.++..|... |+++..+|++|+..+|..+...|.. ...++
T Consensus 417 ~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~k--G~~a~pYHaGL~y~eRk~vE~~F~~q~l~~V 494 (830)
T COG1202 417 SEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGK--GLKAAPYHAGLPYKERKSVERAFAAQELAAV 494 (830)
T ss_pred hHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcC--CcccccccCCCcHHHHHHHHHHHhcCCcceE
Confidence 778888888887532 578999999999999999999875 9999999999999999999999999 99999
Q ss_pred EEccccccccccCCCCcEEEEc----CCCC-CHhHHHHHhhccCcCCC--CCeEEEEeCcc
Q 004567 367 FCTDVASRGLDFNKAVDWVVQV----DCPE-DVASYIHRVGRTARYNS--GGRSVLFLTPT 420 (744)
Q Consensus 367 VaTdv~arGlDi~p~V~~VI~~----d~P~-s~~~yiQRiGRagR~g~--~G~~il~l~~~ 420 (744)
|+|.+++.|+|| | .+.||+- +.-| ++..|.|+.|||||-+- .|.+++++.|.
T Consensus 495 VTTAAL~AGVDF-P-ASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 495 VTTAALAAGVDF-P-ASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred eehhhhhcCCCC-c-hHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 999999999999 8 5666652 2333 89999999999999764 69999998775
No 67
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.6e-33 Score=299.02 Aligned_cols=328 Identities=21% Similarity=0.251 Sum_probs=245.5
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhcc
Q 004567 85 GFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKH 164 (744)
Q Consensus 85 gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~ 164 (744)
+...++.||......++.+ |.|++.|||-|||+.+++-+...|... +| ++|+++||+-|+.|.+..+.++..-
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~-----~~-kvlfLAPTKPLV~Qh~~~~~~v~~i 84 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF-----GG-KVLFLAPTKPLVLQHAEFCRKVTGI 84 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc-----CC-eEEEecCCchHHHHHHHHHHHHhCC
Confidence 3457899999988888865 999999999999998877777776432 34 8999999999999999999999876
Q ss_pred CCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHhCCCC
Q 004567 165 HNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKH 244 (744)
Q Consensus 165 ~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~ 244 (744)
..-.+..++| ..........+...+|+|+||+.+.+-|..+ .+++.++.+||||||||-....-+-.+...+-...++
T Consensus 85 p~~~i~~ltG-ev~p~~R~~~w~~~kVfvaTPQvveNDl~~G-rid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~ 162 (542)
T COG1111 85 PEDEIAALTG-EVRPEEREELWAKKKVFVATPQVVENDLKAG-RIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKN 162 (542)
T ss_pred ChhheeeecC-CCChHHHHHHHhhCCEEEeccHHHHhHHhcC-ccChHHceEEEechhhhccCcchHHHHHHHHHHhccC
Confidence 6667788888 6667767778889999999999999888876 7889999999999999977655445555545555567
Q ss_pred CcEEEEeeccChhHHHHHHH----hcCC--------Cc-----------cccc---------------------------
Q 004567 245 RQTFLFSATQTKSVQDLARL----SLKD--------PQ-----------YLSV--------------------------- 274 (744)
Q Consensus 245 ~q~ll~SAT~~~~v~~la~~----~l~~--------p~-----------~i~v--------------------------- 274 (744)
+.++++|||+..+...+..- +..+ |. ++.|
T Consensus 163 ~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~ 242 (542)
T COG1111 163 PLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKEL 242 (542)
T ss_pred ceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88999999987664332211 1100 00 0000
Q ss_pred -----ccc--------------------c---------------------------------------cccCccc-----
Q 004567 275 -----HEE--------------------S---------------------------------------VTATPNR----- 285 (744)
Q Consensus 275 -----~~~--------------------~---------------------------------------~~~~~~~----- 285 (744)
... + ...+...
T Consensus 243 g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~ 322 (542)
T COG1111 243 GVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAK 322 (542)
T ss_pred CceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHH
Confidence 000 0 0000000
Q ss_pred --------------cceeEEEcChhhHHHHHHHHHHHh----CCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEe----
Q 004567 286 --------------LQQTAMIVPLEQKLDMLWSFIKAH----LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCL---- 343 (744)
Q Consensus 286 --------------l~q~~~~~~~~~kl~~L~~lLk~~----~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~l---- 343 (744)
+.........+.|+..+..+++.+ .+.++|||++.+.+++.+.+.|....+...+.++
T Consensus 323 ~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~ 402 (542)
T COG1111 323 SLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQAS 402 (542)
T ss_pred HHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccc
Confidence 000000011123455555555543 3679999999999999999999997555542222
Q ss_pred ---eCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCc
Q 004567 344 ---YGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTP 419 (744)
Q Consensus 344 ---hg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~ 419 (744)
..||+|.++.++++.|++ .++|||||++++.|||| |.|+.||.|++-.|...++||.|||||. +.|.++++++.
T Consensus 403 r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDI-p~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~ 480 (542)
T COG1111 403 REGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDI-PEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTE 480 (542)
T ss_pred cccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCC-CcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEec
Confidence 257999999999999999 99999999999999999 9999999999999999999999999997 89999999998
Q ss_pred chHH
Q 004567 420 TEMK 423 (744)
Q Consensus 420 ~e~~ 423 (744)
+..+
T Consensus 481 gtrd 484 (542)
T COG1111 481 GTRD 484 (542)
T ss_pred CchH
Confidence 8553
No 68
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=3.1e-33 Score=306.74 Aligned_cols=292 Identities=18% Similarity=0.185 Sum_probs=202.1
Q ss_pred HHHHHHHHHHcCCC--EEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccC----
Q 004567 92 IQRASLPHSLCGRD--ILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH---- 165 (744)
Q Consensus 92 iQ~~aip~il~g~d--vlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~---- 165 (744)
+|.++++.+..+.+ ++++||||||||++|++|++.. +.++++++|+++|+.|+++.++.+....
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~ 70 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPER 70 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCC
Confidence 59999999999875 7889999999999999999842 3458999999999999999999876432
Q ss_pred CceEEEEEcCccChH--H-------------------HHHhcCCCcEEEEChHHHHHHHhcC---CCC----CCCCceEE
Q 004567 166 NFSAGLLIGGRRDVD--M-------------------EKEHVNELNILVCTPGRLLQHMDET---PNF----DCSQLQIL 217 (744)
Q Consensus 166 ~~~~~~l~Gg~~~~~--~-------------------e~~~~~~~~IlV~TPgrLl~~l~~~---~~~----~~~~l~~l 217 (744)
+..+..+.|. .... . .......+.|+++||+.|...+... +.. .+.++++|
T Consensus 71 ~~~v~~~~g~-~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~i 149 (357)
T TIGR03158 71 DVNLLHVSKA-TLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTV 149 (357)
T ss_pred CceEEEecCC-chHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEE
Confidence 4555555552 1111 0 0111246889999999987655432 111 14789999
Q ss_pred EEcCchhhhccc-----hHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHh--cCCCcccccccccc-----------
Q 004567 218 ILDEADRILDVG-----FKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLS--LKDPQYLSVHEESV----------- 279 (744)
Q Consensus 218 VlDEAh~lld~g-----f~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~--l~~p~~i~v~~~~~----------- 279 (744)
||||+|.+...+ +......++...+...+++++|||+++.+....... +..|... +.....
T Consensus 150 V~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~-v~g~~~~~~~~~~~~~~ 228 (357)
T TIGR03158 150 IFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAP-IDGEKYQFPDNPELEAD 228 (357)
T ss_pred EEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeee-ecCcccccCCChhhhcc
Confidence 999999876433 222344444444445799999999998877665543 3333221 111100
Q ss_pred ------ccCccccceeEEEcChhhHHHHH---HHHH----HHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCC
Q 004567 280 ------TATPNRLQQTAMIVPLEQKLDML---WSFI----KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGR 346 (744)
Q Consensus 280 ------~~~~~~l~q~~~~~~~~~kl~~L---~~lL----k~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~ 346 (744)
......+.+.+.. ....+...+ ...+ +...+.++||||+|+..++.++..|+....++.+..+||.
T Consensus 229 ~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~ 307 (357)
T TIGR03158 229 NKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGF 307 (357)
T ss_pred ccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecC
Confidence 0011234444433 222333222 2222 2234679999999999999999999975445678899999
Q ss_pred CCHHHHHHHHHHHhccCCeEEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhccC
Q 004567 347 MKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTA 405 (744)
Q Consensus 347 ~~~~~R~~i~~~F~~~~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRag 405 (744)
+++..|..+. ...|||||++++||||| +.+ +|| ++ |.+.++|+||+||+|
T Consensus 308 ~~~~~R~~~~-----~~~iLVaTdv~~rGiDi-~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 308 APKKDRERAM-----QFDILLGTSTVDVGVDF-KRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCHHHHHHhc-----cCCEEEEecHHhcccCC-CCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9999986543 67899999999999999 765 777 55 889999999999997
No 69
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=9.8e-33 Score=332.57 Aligned_cols=325 Identities=22% Similarity=0.286 Sum_probs=240.0
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhcc
Q 004567 85 GFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKH 164 (744)
Q Consensus 85 gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~ 164 (744)
+..+++++|..++..++.+ |+|+++|||+|||+++++++...+. ..+.++|||+||++|+.|+.+.++.+...
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~------~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH------KKGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH------hCCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 4458999999999988877 9999999999999999999888772 23568999999999999999999988755
Q ss_pred CCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHhCCCC
Q 004567 165 HNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKH 244 (744)
Q Consensus 165 ~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~ 244 (744)
.+..+..++| ..............+|+|+||+.+...+... .+.+.++++|||||||++........+...+......
T Consensus 85 ~~~~v~~~~g-~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~ 162 (773)
T PRK13766 85 PEEKIVVFTG-EVSPEKRAELWEKAKVIVATPQVIENDLIAG-RISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKN 162 (773)
T ss_pred CCceEEEEeC-CCCHHHHHHHHhCCCEEEECHHHHHHHHHcC-CCChhhCcEEEEECCccccccccHHHHHHHHHhcCCC
Confidence 4557777777 4444444455567899999999998877654 5667899999999999987654344444444444456
Q ss_pred CcEEEEeeccChhHHHH---HHH-hcC-----------------CCc--cccccc------------------------c
Q 004567 245 RQTFLFSATQTKSVQDL---ARL-SLK-----------------DPQ--YLSVHE------------------------E 277 (744)
Q Consensus 245 ~q~ll~SAT~~~~v~~l---a~~-~l~-----------------~p~--~i~v~~------------------------~ 277 (744)
.++++||||+......+ ... ++. .+. ++.+.- .
T Consensus 163 ~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~ 242 (773)
T PRK13766 163 PLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKEL 242 (773)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 78999999985443322 111 110 000 000000 0
Q ss_pred ccccCcc-------------cccee-------------------------------------------------------
Q 004567 278 SVTATPN-------------RLQQT------------------------------------------------------- 289 (744)
Q Consensus 278 ~~~~~~~-------------~l~q~------------------------------------------------------- 289 (744)
....... .+.+.
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~ 322 (773)
T PRK13766 243 GVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKA 322 (773)
T ss_pred CCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHH
Confidence 0000000 00000
Q ss_pred -----------------EEEcChhhHHHHHHHHHHH----hCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCC--
Q 004567 290 -----------------AMIVPLEQKLDMLWSFIKA----HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGR-- 346 (744)
Q Consensus 290 -----------------~~~~~~~~kl~~L~~lLk~----~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~-- 346 (744)
........|+..|..+|.. ..+.++||||+++..|+.+++.|... ++.+..+||.
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~--~~~~~~~~g~~~ 400 (773)
T PRK13766 323 SKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKE--GIKAVRFVGQAS 400 (773)
T ss_pred HHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhC--CCceEEEEcccc
Confidence 0001112355666666655 45789999999999999999999764 8888999886
Q ss_pred ------CCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCc
Q 004567 347 ------MKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTP 419 (744)
Q Consensus 347 ------~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~ 419 (744)
|++.+|..++..|++ ...|||||+++++|+|+ |.+++||+||+|++...|+||+||+||.|. |.+++++..
T Consensus 401 ~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi-~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~ 478 (773)
T PRK13766 401 KDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDI-PSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAK 478 (773)
T ss_pred ccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCc-ccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeC
Confidence 999999999999999 89999999999999999 999999999999999999999999999865 788888776
Q ss_pred chH
Q 004567 420 TEM 422 (744)
Q Consensus 420 ~e~ 422 (744)
...
T Consensus 479 ~t~ 481 (773)
T PRK13766 479 GTR 481 (773)
T ss_pred CCh
Confidence 543
No 70
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=4e-33 Score=320.56 Aligned_cols=322 Identities=24% Similarity=0.276 Sum_probs=232.1
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHH-HHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhh
Q 004567 84 AGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVL-EKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162 (744)
Q Consensus 84 ~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil-~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~ 162 (744)
.|. .|+++|..+.+.++.|+ |+.++||+|||++|++|++ ..+ .|.+++|++||++||.|.++.+..+.
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL--------~G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNAL--------TGKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHH--------hCCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 576 89999999999888776 9999999999999999995 444 35679999999999999999999999
Q ss_pred ccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHH-HHHHhcCC-----CCCCCCceEEEEcCchhhhc-cc------
Q 004567 163 KHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRL-LQHMDETP-----NFDCSQLQILILDEADRILD-VG------ 229 (744)
Q Consensus 163 ~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrL-l~~l~~~~-----~~~~~~l~~lVlDEAh~lld-~g------ 229 (744)
..+++++++++| +.+.. +......++|+||||++| ++++...- .+.++.+.++||||+|+++- ..
T Consensus 122 ~~LGLsv~~i~g-~~~~~-~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLii 199 (745)
T TIGR00963 122 RFLGLSVGLILS-GMSPE-ERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLII 199 (745)
T ss_pred ccCCCeEEEEeC-CCCHH-HHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhh
Confidence 999999999999 44443 333334689999999999 88887652 23578999999999998763 21
Q ss_pred ---------hHHHHHHHHHhCCCC--------CcEEEEeec--------------cCh-------hHHH-H-H-HHhcCC
Q 004567 230 ---------FKKALNAIVSQLPKH--------RQTFLFSAT--------------QTK-------SVQD-L-A-RLSLKD 268 (744)
Q Consensus 230 ---------f~~~l~~Il~~lp~~--------~q~ll~SAT--------------~~~-------~v~~-l-a-~~~l~~ 268 (744)
.......|...+... .+.+.++.. ... .+.. + | .++..+
T Consensus 200 sg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d 279 (745)
T TIGR00963 200 SGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKD 279 (745)
T ss_pred cCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcC
Confidence 112222333333211 111111110 000 0000 0 0 001112
Q ss_pred Cccccc-------cc-----------------------------------------------------------------
Q 004567 269 PQYLSV-------HE----------------------------------------------------------------- 276 (744)
Q Consensus 269 p~~i~v-------~~----------------------------------------------------------------- 276 (744)
-.|+.. +.
T Consensus 280 ~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~ 359 (745)
T TIGR00963 280 VDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEK 359 (745)
T ss_pred CcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHH
Confidence 222210 00
Q ss_pred ---cccccCcccc------ceeEEEcChhhHHHHHHHHHH--HhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeC
Q 004567 277 ---ESVTATPNRL------QQTAMIVPLEQKLDMLWSFIK--AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG 345 (744)
Q Consensus 277 ---~~~~~~~~~l------~q~~~~~~~~~kl~~L~~lLk--~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg 345 (744)
-.+...|.+. ....+......|...+...+. ...+.++||||+|+..++.+...|... |++...+||
T Consensus 360 iY~l~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~--gi~~~~Lna 437 (745)
T TIGR00963 360 IYNLEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKER--GIPHNVLNA 437 (745)
T ss_pred HhCCCEEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHc--CCCeEEeeC
Confidence 0000011111 011222334567777777663 334889999999999999999999986 999999999
Q ss_pred CCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCC-------CcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEe
Q 004567 346 RMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKA-------VDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFL 417 (744)
Q Consensus 346 ~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~-------V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l 417 (744)
+ +..|...+..|.. ...|+|||++++||+|| +. .-+||+++.|.|...|.||+|||||.|.+|.+..|+
T Consensus 438 ~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI-~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~l 514 (745)
T TIGR00963 438 K--NHEREAEIIAQAGRKGAVTIATNMAGRGTDI-KLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFL 514 (745)
T ss_pred C--hHHHHHHHHHhcCCCceEEEEeccccCCcCC-CccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEE
Confidence 8 8899999999999 89999999999999999 76 559999999999999999999999999999999999
Q ss_pred CcchHH
Q 004567 418 TPTEMK 423 (744)
Q Consensus 418 ~~~e~~ 423 (744)
+..+.-
T Consensus 515 s~eD~l 520 (745)
T TIGR00963 515 SLEDNL 520 (745)
T ss_pred eccHHH
Confidence 987653
No 71
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.7e-33 Score=330.67 Aligned_cols=343 Identities=19% Similarity=0.241 Sum_probs=256.0
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHH-cCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHH
Q 004567 72 PISKKTKSGLKDAGFVKMTDIQRASLPHSL-CGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTREL 150 (744)
Q Consensus 72 ~ls~~~~~~L~~~gf~~~t~iQ~~aip~il-~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreL 150 (744)
.+.+.+...++..|+.++.+.|+.++...+ .++|+|+++|||||||+.+++.++..+... +.++|+|||+++|
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~------~~k~vYivPlkAL 88 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG------GGKVVYIVPLKAL 88 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc------CCcEEEEeChHHH
Confidence 478889999999999899998888886655 559999999999999999999999998653 5779999999999
Q ss_pred HHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccch
Q 004567 151 ADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGF 230 (744)
Q Consensus 151 a~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf 230 (744)
|.|+++.|+ ....++++++..+| ..+. ....+.+++|+|+||+++...+++.+. -+..+++|||||+|.+.+...
T Consensus 89 a~Ek~~~~~-~~~~~GirV~~~Tg-D~~~--~~~~l~~~~ViVtT~EK~Dsl~R~~~~-~~~~V~lvViDEiH~l~d~~R 163 (766)
T COG1204 89 AEEKYEEFS-RLEELGIRVGISTG-DYDL--DDERLARYDVIVTTPEKLDSLTRKRPS-WIEEVDLVVIDEIHLLGDRTR 163 (766)
T ss_pred HHHHHHHhh-hHHhcCCEEEEecC-Cccc--chhhhccCCEEEEchHHhhHhhhcCcc-hhhcccEEEEeeeeecCCccc
Confidence 999999999 34567899999999 3332 235677899999999999888777755 467899999999999998877
Q ss_pred HHHHHHHHHhCCCC---CcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhh------HHHH
Q 004567 231 KKALNAIVSQLPKH---RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ------KLDM 301 (744)
Q Consensus 231 ~~~l~~Il~~lp~~---~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~------kl~~ 301 (744)
+..+..|+..++.. .|++++|||+|+...--.++... +......... ...+....+.+....... ..+.
T Consensus 164 G~~lE~iv~r~~~~~~~~rivgLSATlpN~~evA~wL~a~-~~~~~~rp~~-l~~~v~~~~~~~~~~~~~k~~~~~~~~~ 241 (766)
T COG1204 164 GPVLESIVARMRRLNELIRIVGLSATLPNAEEVADWLNAK-LVESDWRPVP-LRRGVPYVGAFLGADGKKKTWPLLIDNL 241 (766)
T ss_pred CceehhHHHHHHhhCcceEEEEEeeecCCHHHHHHHhCCc-ccccCCCCcc-cccCCccceEEEEecCccccccccchHH
Confidence 88888887766543 79999999999865443343332 2211111111 112222333333333222 2233
Q ss_pred HHHHHHH-h-CCCcEEEEecchHHHHHHHHHHHhhC-------------------C----------------CCcEEEee
Q 004567 302 LWSFIKA-H-LNSKILVFLTSCKQVKYVFEAFKKLR-------------------P----------------GIPLMCLY 344 (744)
Q Consensus 302 L~~lLk~-~-~~~k~IVF~~s~~~v~~l~~~L~~l~-------------------~----------------g~~v~~lh 344 (744)
+..++.. . .++.+||||+|++.+...+..++... . ...+..+|
T Consensus 242 ~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHh 321 (766)
T COG1204 242 ALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHH 321 (766)
T ss_pred HHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccc
Confidence 3333322 2 27899999999999998888887310 0 12377899
Q ss_pred CCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCcEEEE-----cC-----CCCCHhHHHHHhhccCcCCC--CC
Q 004567 345 GRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQ-----VD-----CPEDVASYIHRVGRTARYNS--GG 411 (744)
Q Consensus 345 g~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~-----~d-----~P~s~~~yiQRiGRagR~g~--~G 411 (744)
++++...|..+.+.|+. ...||+||++++.|+|+ | ++.||. |+ .+.++.+|+|++|||||.|- .|
T Consensus 322 AGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNL-P-A~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G 399 (766)
T COG1204 322 AGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNL-P-ARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYG 399 (766)
T ss_pred cCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCC-c-ceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCC
Confidence 99999999999999999 99999999999999999 8 677775 44 35678999999999999875 47
Q ss_pred eEEEEeC-cchHHHHHHHH
Q 004567 412 RSVLFLT-PTEMKMLEKLR 429 (744)
Q Consensus 412 ~~il~l~-~~e~~~l~~l~ 429 (744)
.++++.+ ..+..++....
T Consensus 400 ~~~i~~~~~~~~~~~~~~~ 418 (766)
T COG1204 400 EAIILATSHDELEYLAELY 418 (766)
T ss_pred cEEEEecCccchhHHHHHh
Confidence 8888874 44444444433
No 72
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=1.8e-32 Score=326.29 Aligned_cols=377 Identities=21% Similarity=0.242 Sum_probs=275.1
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHH
Q 004567 74 SKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQ 153 (744)
Q Consensus 74 s~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Q 153 (744)
...+...|.+.|+..|+.||.+|+..+.+|+|+|++.+||||||+||++||++.+.+.. ..++|+|.||++||+.
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~-----~a~AL~lYPtnALa~D 130 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP-----SARALLLYPTNALAND 130 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc-----CccEEEEechhhhHhh
Confidence 34457888999999999999999999999999999999999999999999999998763 3379999999999999
Q ss_pred HHHHHHHhhccCC--ceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcC---CCCCCCCceEEEEcCchhhhcc
Q 004567 154 LFDVLKAVGKHHN--FSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDET---PNFDCSQLQILILDEADRILDV 228 (744)
Q Consensus 154 i~~~l~~~~~~~~--~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~---~~~~~~~l~~lVlDEAh~lld~ 228 (744)
+.+.|+++....+ +.++...|+......+....+.++||++||.+|-.++... +.+.++++++||+||+|.+-..
T Consensus 131 Q~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv 210 (851)
T COG1205 131 QAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGV 210 (851)
T ss_pred HHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecccc
Confidence 9999999988777 6777777744444444556678999999999997755443 2344788999999999976432
Q ss_pred chHHH-------HHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcC-------
Q 004567 229 GFKKA-------LNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP------- 294 (744)
Q Consensus 229 gf~~~-------l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~------- 294 (744)
|+.. +..++...+...|+|+.|||+.+...........+.... +.... .+......+...+
T Consensus 211 -~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~-v~~~g---~~~~~~~~~~~~p~~~~~~~ 285 (851)
T COG1205 211 -QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVP-VDEDG---SPRGLRYFVRREPPIRELAE 285 (851)
T ss_pred -chhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceee-ccCCC---CCCCceEEEEeCCcchhhhh
Confidence 3333 333444556689999999999877655555444433332 32222 2333333433333
Q ss_pred --hhhHHHHHHHHHHHh--CCCcEEEEecchHHHHHHHH----HHHhhC--CCCcEEEeeCCCCHHHHHHHHHHHhc-cC
Q 004567 295 --LEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFE----AFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCE-KR 363 (744)
Q Consensus 295 --~~~kl~~L~~lLk~~--~~~k~IVF~~s~~~v~~l~~----~L~~l~--~g~~v~~lhg~~~~~~R~~i~~~F~~-~~ 363 (744)
.......+..++... .+-++|||+.++.+|+.++. .+.... -...+..++|++...+|..+...|+. +.
T Consensus 286 ~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~ 365 (851)
T COG1205 286 SIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGEL 365 (851)
T ss_pred hcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCc
Confidence 112333333333322 37899999999999999973 333321 01458899999999999999999999 99
Q ss_pred CeEEEccccccccccCCCCcEEEEcCCCC-CHhHHHHHhhccCcCCCCCeEEEEeCcch--HHHHHHHHHc-C---CCcc
Q 004567 364 SVLFCTDVASRGLDFNKAVDWVVQVDCPE-DVASYIHRVGRTARYNSGGRSVLFLTPTE--MKMLEKLREA-K---IPIH 436 (744)
Q Consensus 364 ~VLVaTdv~arGlDi~p~V~~VI~~d~P~-s~~~yiQRiGRagR~g~~G~~il~l~~~e--~~~l~~l~~~-~---i~i~ 436 (744)
.++++|+++.-|+|| .++++||..+.|. +..+++||+||+||.++.+..++++..+- ..|+..-... . .+++
T Consensus 366 ~~~~st~Alelgidi-G~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~~~~~~~e 444 (851)
T COG1205 366 LGVIATNALELGIDI-GSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLETGFGPVE 444 (851)
T ss_pred cEEecchhhhhceee-hhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhhcccCccc
Confidence 999999999999999 8999999999999 89999999999999997777666665332 2233222221 2 4555
Q ss_pred cccccccccccHHHHHHHHHhcChh
Q 004567 437 FTKANTKRLQPVSGLLAALLVKYPD 461 (744)
Q Consensus 437 ~~~~~~~~~~~i~~~l~~~~~~~~~ 461 (744)
...++...-..+...+.......|.
T Consensus 445 ~~~~~~~n~~~l~~hl~~~~~E~p~ 469 (851)
T COG1205 445 SVRVDDNNEYLLDGHLLCADAELPL 469 (851)
T ss_pred ccccCCCCcchhhhhHHhhCccCCc
Confidence 6666655555555556555555443
No 73
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=6.1e-32 Score=283.46 Aligned_cols=332 Identities=21% Similarity=0.273 Sum_probs=250.2
Q ss_pred HHHHHHHH-CCCCCC-cHHHHHHHHHHHcC-CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHH
Q 004567 76 KTKSGLKD-AGFVKM-TDIQRASLPHSLCG-RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELAD 152 (744)
Q Consensus 76 ~~~~~L~~-~gf~~~-t~iQ~~aip~il~g-~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~ 152 (744)
.+..+|++ +|+..+ ++.|..|+..+..+ +||.+++|||+||+|||.+|.|-. +.-.||++|..+|..
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~----------~gITIV~SPLiALIk 75 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH----------GGITIVISPLIALIK 75 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh----------CCeEEEehHHHHHHH
Confidence 45566766 577654 89999999998876 789999999999999999999844 336899999999999
Q ss_pred HHHHHHHHhhccCCceEEEEEcCccChHHHHHhc-------CCCcEEEEChHHHH----HHHhcCCCCCCCCceEEEEcC
Q 004567 153 QLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV-------NELNILVCTPGRLL----QHMDETPNFDCSQLQILILDE 221 (744)
Q Consensus 153 Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~-------~~~~IlV~TPgrLl----~~l~~~~~~~~~~l~~lVlDE 221 (744)
.+.+.|.++- +.+..+.. .-+..+....+ ....+++.||+... +-+.++ ..+-+-|.++|+||
T Consensus 76 DQiDHL~~LK----Vp~~SLNS-KlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~-L~~r~~L~Y~vVDE 149 (641)
T KOG0352|consen 76 DQIDHLKRLK----VPCESLNS-KLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG-LANRDVLRYIVVDE 149 (641)
T ss_pred HHHHHHHhcC----CchhHhcc-hhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH-HhhhceeeeEEech
Confidence 8888887763 23322222 11111111111 24679999998732 222221 22235689999999
Q ss_pred chhhhccc--hHHHHHHH---HHhCCCCCcEEEEeeccChhHHH--HHHHhcCCCccccccccccccCccccceeEE-Ec
Q 004567 222 ADRILDVG--FKKALNAI---VSQLPKHRQTFLFSATQTKSVQD--LARLSLKDPQYLSVHEESVTATPNRLQQTAM-IV 293 (744)
Q Consensus 222 Ah~lld~g--f~~~l~~I---l~~lp~~~q~ll~SAT~~~~v~~--la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~-~~ 293 (744)
||++..|| |++....+ .+.+ .....+.++||.+..|.. .+.+.+.+|.-+.-.+.. ..++..-.. ..
T Consensus 150 AHCVSQWGHDFRPDYL~LG~LRS~~-~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~F----R~NLFYD~~~K~ 224 (641)
T KOG0352|consen 150 AHCVSQWGHDFRPDYLTLGSLRSVC-PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTF----RDNLFYDNHMKS 224 (641)
T ss_pred hhhHhhhccccCcchhhhhhHHhhC-CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcch----hhhhhHHHHHHH
Confidence 99999998 66665544 3444 357799999999999876 456778888766433221 111110000 00
Q ss_pred ChhhHHHHHHHHHHHhC-------------CCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHh
Q 004567 294 PLEQKLDMLWSFIKAHL-------------NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFC 360 (744)
Q Consensus 294 ~~~~kl~~L~~lLk~~~-------------~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~ 360 (744)
...+-+..|.+|..... .+-.||||.|+.+|+.++-.|... |++...+|+++...+|..+.+.|-
T Consensus 225 ~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~--Gi~A~AYHAGLK~~ERTeVQe~WM 302 (641)
T KOG0352|consen 225 FITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIA--GIPAMAYHAGLKKKERTEVQEKWM 302 (641)
T ss_pred HhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhc--CcchHHHhcccccchhHHHHHHHh
Confidence 11223445556554432 356899999999999999998775 999999999999999999999999
Q ss_pred c-cCCeEEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHHc
Q 004567 361 E-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA 431 (744)
Q Consensus 361 ~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~~ 431 (744)
+ +..||+||...++|+|- |+|++||+++.|.+++-|.|-.||+||.|....|-+++...+...+.+|.+.
T Consensus 303 ~~~~PvI~AT~SFGMGVDK-p~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~ 373 (641)
T KOG0352|consen 303 NNEIPVIAATVSFGMGVDK-PDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSG 373 (641)
T ss_pred cCCCCEEEEEeccccccCC-cceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHhh
Confidence 9 99999999999999999 9999999999999999999999999999999999999999999988888664
No 74
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.6e-31 Score=322.61 Aligned_cols=299 Identities=20% Similarity=0.308 Sum_probs=207.9
Q ss_pred HHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcC----ChHHHHHHHHHHHH-hhccCCce
Q 004567 94 RASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISP----TRELADQLFDVLKA-VGKHHNFS 168 (744)
Q Consensus 94 ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~P----treLa~Qi~~~l~~-~~~~~~~~ 168 (744)
.+.+..+..++.++++|+||||||+. +|.+... ... .....+++.-| +++||.|+.+.+.. +|. .
T Consensus 80 ~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle--~g~--g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~----~ 149 (1294)
T PRK11131 80 QDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLE--LGR--GVKGLIGHTQPRRLAARTVANRIAEELETELGG----C 149 (1294)
T ss_pred HHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHH--cCC--CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcc----e
Confidence 34444555566688999999999995 7854322 111 11112333346 45777777777654 332 2
Q ss_pred EEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCch-hhhccchHHH-HHHHHHhCCCCCc
Q 004567 169 AGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEAD-RILDVGFKKA-LNAIVSQLPKHRQ 246 (744)
Q Consensus 169 ~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh-~lld~gf~~~-l~~Il~~lp~~~q 246 (744)
+|.- +..+.....+++|+|||||+|++++...+. ++++++||||||| ++++++|... +..++... +..|
T Consensus 150 VGY~------vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~--Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~r-pdlK 220 (1294)
T PRK11131 150 VGYK------VRFNDQVSDNTMVKLMTDGILLAEIQQDRL--LMQYDTIIIDEAHERSLNIDFILGYLKELLPRR-PDLK 220 (1294)
T ss_pred ecee------ecCccccCCCCCEEEEChHHHHHHHhcCCc--cccCcEEEecCccccccccchHHHHHHHhhhcC-CCce
Confidence 2221 222223345789999999999999987643 6999999999999 7899988754 33443332 4689
Q ss_pred EEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChh------hHHHHHHHHHH---HhCCCcEEEE
Q 004567 247 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLE------QKLDMLWSFIK---AHLNSKILVF 317 (744)
Q Consensus 247 ~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~------~kl~~L~~lLk---~~~~~k~IVF 317 (744)
+|+||||++. ..++..+...| .+.+.... ..+.+.|..+... ..+..+...+. ....+.+|||
T Consensus 221 vILmSATid~--e~fs~~F~~ap-vI~V~Gr~-----~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVF 292 (1294)
T PRK11131 221 VIITSATIDP--ERFSRHFNNAP-IIEVSGRT-----YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIF 292 (1294)
T ss_pred EEEeeCCCCH--HHHHHHcCCCC-EEEEcCcc-----ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 9999999974 45666555555 34443221 1244555544321 22333333322 2346889999
Q ss_pred ecchHHHHHHHHHHHhhC-CCCcEEEeeCCCCHHHHHHHHHHHhccCCeEEEccccccccccCCCCcEEEEcCC------
Q 004567 318 LTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFNKAVDWVVQVDC------ 390 (744)
Q Consensus 318 ~~s~~~v~~l~~~L~~l~-~g~~v~~lhg~~~~~~R~~i~~~F~~~~~VLVaTdv~arGlDi~p~V~~VI~~d~------ 390 (744)
|++...++.+++.|.... +...++.+||+|++.+|..++..+ ...+||||||++++|||| |+|++||+++.
T Consensus 293 Lpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~-g~rkIIVATNIAEtSITI-pgI~yVID~Gl~k~~~Y 370 (1294)
T PRK11131 293 MSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH-SGRRIVLATNVAETSLTV-PGIKYVIDPGTARISRY 370 (1294)
T ss_pred cCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc-CCeeEEEeccHHhhcccc-CcceEEEECCCcccccc
Confidence 999999999999998752 234588999999999999998752 267899999999999999 99999999863
Q ss_pred ------------CCCHhHHHHHhhccCcCCCCCeEEEEeCcchH
Q 004567 391 ------------PEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 422 (744)
Q Consensus 391 ------------P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~ 422 (744)
|.|.++|+||+|||||. .+|.|+.+++..+.
T Consensus 371 d~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 371 SYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred ccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 34668999999999999 78999999997654
No 75
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.98 E-value=3.1e-31 Score=313.70 Aligned_cols=334 Identities=20% Similarity=0.271 Sum_probs=258.5
Q ss_pred HHHHHH-HHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHH
Q 004567 76 KTKSGL-KDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQL 154 (744)
Q Consensus 76 ~~~~~L-~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi 154 (744)
+....| ..+|...+++-|.++|..++.|+|+++.+|||.||++||.+|++-. +.-.|||+|...|...+
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~----------~gitvVISPL~SLm~DQ 320 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL----------GGVTVVISPLISLMQDQ 320 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc----------CCceEEeccHHHHHHHH
Confidence 344444 4579999999999999999999999999999999999999999732 34689999999999765
Q ss_pred HHHHHHhhccCCceEEEEEcCccCh----HHHHHhcC--CCcEEEEChHHHHHHHhcC-CCCCCCC---ceEEEEcCchh
Q 004567 155 FDVLKAVGKHHNFSAGLLIGGRRDV----DMEKEHVN--ELNILVCTPGRLLQHMDET-PNFDCSQ---LQILILDEADR 224 (744)
Q Consensus 155 ~~~l~~~~~~~~~~~~~l~Gg~~~~----~~e~~~~~--~~~IlV~TPgrLl~~l~~~-~~~~~~~---l~~lVlDEAh~ 224 (744)
...+ ..+++.+..+.++.... .......+ .++|++.||+++.....-. ..+.+.. +.++||||||+
T Consensus 321 v~~L----~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHC 396 (941)
T KOG0351|consen 321 VTHL----SKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHC 396 (941)
T ss_pred HHhh----hhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHH
Confidence 5555 24468888888854442 12222223 5899999999875421111 1122333 89999999999
Q ss_pred hhccc--hHHHHHHH---HHhCCCCCcEEEEeeccChhHHHH--HHHhcCCCccccccccccccCccccceeEEEcChhh
Q 004567 225 ILDVG--FKKALNAI---VSQLPKHRQTFLFSATQTKSVQDL--ARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ 297 (744)
Q Consensus 225 lld~g--f~~~l~~I---l~~lp~~~q~ll~SAT~~~~v~~l--a~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~ 297 (744)
+..|| |++....+ ....|. ..+|.+|||.+..+..- ..+.+.+|..+... ....++...+..-....
T Consensus 397 VSqWgHdFRp~Yk~l~~l~~~~~~-vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s-----fnR~NL~yeV~~k~~~~ 470 (941)
T KOG0351|consen 397 VSQWGHDFRPSYKRLGLLRIRFPG-VPFIALTATATERVREDVIRSLGLRNPELFKSS-----FNRPNLKYEVSPKTDKD 470 (941)
T ss_pred hhhhcccccHHHHHHHHHHhhCCC-CCeEEeehhccHHHHHHHHHHhCCCCcceeccc-----CCCCCceEEEEeccCcc
Confidence 99998 76665554 444544 78999999999988763 44566677644321 22233333333222223
Q ss_pred HHHHHHHHHH-HhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccc
Q 004567 298 KLDMLWSFIK-AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRG 375 (744)
Q Consensus 298 kl~~L~~lLk-~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arG 375 (744)
....+...++ .+....+||||.++..|+.+...|++. ++.+..||++|+..+|..+...|.. +.+|+|||=+.++|
T Consensus 471 ~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~--~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMG 548 (941)
T KOG0351|consen 471 ALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSL--GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMG 548 (941)
T ss_pred chHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHh--chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCC
Confidence 3333444444 456889999999999999999999997 8999999999999999999999999 99999999999999
Q ss_pred cccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHHcC
Q 004567 376 LDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAK 432 (744)
Q Consensus 376 lDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~~~ 432 (744)
||. |+|+.||||..|.+.+.|+|-+|||||.|....|++|+...+...++.+...+
T Consensus 549 IdK-~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 549 IDK-PDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred CCC-CceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHcc
Confidence 999 99999999999999999999999999999999999999999988888887765
No 76
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.98 E-value=6.5e-30 Score=300.84 Aligned_cols=318 Identities=20% Similarity=0.215 Sum_probs=222.7
Q ss_pred CCcHHHHHHHHHHHcC---CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhcc
Q 004567 88 KMTDIQRASLPHSLCG---RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKH 164 (744)
Q Consensus 88 ~~t~iQ~~aip~il~g---~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~ 164 (744)
.||++|.++++.++.+ +++++.|+||||||.+|+.++.+.+. .|.++|||+||++|+.|+++.++...
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~-------~g~~vLvLvPt~~L~~Q~~~~l~~~f-- 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA-------QGKQALVLVPEIALTPQMLARFRARF-- 214 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH-------cCCeEEEEeCcHHHHHHHHHHHHHHh--
Confidence 5899999999999974 78999999999999999988877762 36789999999999999999998753
Q ss_pred CCceEEEEEcCccChHH----HHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccc---h---HHHH
Q 004567 165 HNFSAGLLIGGRRDVDM----EKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG---F---KKAL 234 (744)
Q Consensus 165 ~~~~~~~l~Gg~~~~~~----e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~g---f---~~~l 234 (744)
+..+..++|+...... .....+.++|+|+|++.+. ..+.++.+|||||+|...-.. . ...+
T Consensus 215 -g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v 285 (679)
T PRK05580 215 -GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDL 285 (679)
T ss_pred -CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCccccccCcCCCCcHHHH
Confidence 4677888884333221 1122356899999998873 346899999999999755322 1 1222
Q ss_pred HHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChh-------hHHHHHHHHHH
Q 004567 235 NAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLE-------QKLDMLWSFIK 307 (744)
Q Consensus 235 ~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~-------~kl~~L~~lLk 307 (744)
.+......+.+++++|||++......+... ....+............ ....+..... .-...|+..++
T Consensus 286 -a~~ra~~~~~~~il~SATps~~s~~~~~~g--~~~~~~l~~r~~~~~~p--~v~~id~~~~~~~~~~~~ls~~l~~~i~ 360 (679)
T PRK05580 286 -AVVRAKLENIPVVLGSATPSLESLANAQQG--RYRLLRLTKRAGGARLP--EVEIIDMRELLRGENGSFLSPPLLEAIK 360 (679)
T ss_pred -HHHHhhccCCCEEEEcCCCCHHHHHHHhcc--ceeEEEeccccccCCCC--eEEEEechhhhhhcccCCCCHHHHHHHH
Confidence 233444567899999999775544333211 11122111110000000 1111111000 01134555554
Q ss_pred HhC--CCcEEEEecch------------------------------------------------------------HHHH
Q 004567 308 AHL--NSKILVFLTSC------------------------------------------------------------KQVK 325 (744)
Q Consensus 308 ~~~--~~k~IVF~~s~------------------------------------------------------------~~v~ 325 (744)
... +.++|||+|.+ ..++
T Consensus 361 ~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e 440 (679)
T PRK05580 361 QRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTE 440 (679)
T ss_pred HHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHH
Confidence 433 45788887641 2567
Q ss_pred HHHHHHHhhCCCCcEEEeeCCCC--HHHHHHHHHHHhc-cCCeEEEccccccccccCCCCcEEEEcCC--CCC-------
Q 004567 326 YVFEAFKKLRPGIPLMCLYGRMK--QDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDC--PED------- 393 (744)
Q Consensus 326 ~l~~~L~~l~~g~~v~~lhg~~~--~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~--P~s------- 393 (744)
.+++.|.+.+|+.++..+|++++ ..++..+++.|.+ +..|||+|+++++|+|| |+|++|+.+|. +.+
T Consensus 441 ~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~-p~v~lV~il~aD~~l~~pdfra~ 519 (679)
T PRK05580 441 RLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDF-PNVTLVGVLDADLGLFSPDFRAS 519 (679)
T ss_pred HHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCC-CCcCEEEEEcCchhccCCccchH
Confidence 89999999999999999999997 4678999999999 99999999999999999 99999976654 322
Q ss_pred ---HhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHH
Q 004567 394 ---VASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLR 429 (744)
Q Consensus 394 ---~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~ 429 (744)
...|+|++||+||.+..|.+++.....+...+..+.
T Consensus 520 Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~~ 558 (679)
T PRK05580 520 ERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQALL 558 (679)
T ss_pred HHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHHHH
Confidence 367999999999999999999887655544444443
No 77
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.98 E-value=7.5e-31 Score=303.64 Aligned_cols=307 Identities=17% Similarity=0.226 Sum_probs=214.1
Q ss_pred CCcHHHHHHHHHHHc-C--CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhcc
Q 004567 88 KMTDIQRASLPHSLC-G--RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKH 164 (744)
Q Consensus 88 ~~t~iQ~~aip~il~-g--~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~ 164 (744)
.|+|||.+|+..+.. | +..++++|||+|||++.+..+. .+ +..+|||||+..|+.||.+.|.+++..
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l---------~k~tLILvps~~Lv~QW~~ef~~~~~l 324 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV---------KKSCLVLCTSAVSVEQWKQQFKMWSTI 324 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh---------CCCEEEEeCcHHHHHHHHHHHHHhcCC
Confidence 589999999998874 3 3689999999999998765443 32 345999999999999999999998754
Q ss_pred CCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcC-------CCCCCCCceEEEEcCchhhhccchHHHHHHH
Q 004567 165 HNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDET-------PNFDCSQLQILILDEADRILDVGFKKALNAI 237 (744)
Q Consensus 165 ~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~-------~~~~~~~l~~lVlDEAh~lld~gf~~~l~~I 237 (744)
....++.++|+.... ......|+|+|+..+.....+. ..+.-..+.+||+||||++....| ..+
T Consensus 325 ~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~f----r~i 395 (732)
T TIGR00603 325 DDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAMF----RRV 395 (732)
T ss_pred CCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHHH----HHH
Confidence 455666676632221 1234789999999875322111 123335788999999999865444 445
Q ss_pred HHhCCCCCcEEEEeeccChhHHHHHHH-hcCCCcccccccccc--ccCcccccee-----------------------EE
Q 004567 238 VSQLPKHRQTFLFSATQTKSVQDLARL-SLKDPQYLSVHEESV--TATPNRLQQT-----------------------AM 291 (744)
Q Consensus 238 l~~lp~~~q~ll~SAT~~~~v~~la~~-~l~~p~~i~v~~~~~--~~~~~~l~q~-----------------------~~ 291 (744)
+..+. ....+++|||+.........+ ++-.|..+....... .......... ..
T Consensus 396 l~~l~-a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l 474 (732)
T TIGR00603 396 LTIVQ-AHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLL 474 (732)
T ss_pred HHhcC-cCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHH
Confidence 55554 345799999986432211111 111222211111000 0000000000 01
Q ss_pred EcChhhHHHHHHHHHHHh--CCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc--cCCeEE
Q 004567 292 IVPLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE--KRSVLF 367 (744)
Q Consensus 292 ~~~~~~kl~~L~~lLk~~--~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~--~~~VLV 367 (744)
......|+..+..+++.| .+.++||||.++..+..++..| + +..+||++++.+|..+++.|+. ...+||
T Consensus 475 ~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-----~--~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv 547 (732)
T TIGR00603 475 YVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-----G--KPFIYGPTSQQERMQILQNFQHNPKVNTIF 547 (732)
T ss_pred hhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-----C--CceEECCCCHHHHHHHHHHHHhCCCccEEE
Confidence 112345667777777766 5789999999999988888776 2 3568999999999999999986 569999
Q ss_pred EccccccccccCCCCcEEEEcCCC-CCHhHHHHHhhccCcCCCCCeE-------EEEeCcchH
Q 004567 368 CTDVASRGLDFNKAVDWVVQVDCP-EDVASYIHRVGRTARYNSGGRS-------VLFLTPTEM 422 (744)
Q Consensus 368 aTdv~arGlDi~p~V~~VI~~d~P-~s~~~yiQRiGRagR~g~~G~~-------il~l~~~e~ 422 (744)
+|+++.+|||+ |++++||+++.| .|...|+||+||++|.+..|.+ +.|+++...
T Consensus 548 ~SkVgdeGIDl-P~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 548 LSKVGDTSIDL-PEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred EecccccccCC-CCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 99999999999 999999999998 5999999999999999887765 667777655
No 78
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.97 E-value=3.2e-30 Score=293.00 Aligned_cols=328 Identities=20% Similarity=0.286 Sum_probs=232.5
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhc
Q 004567 84 AGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGK 163 (744)
Q Consensus 84 ~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~ 163 (744)
-+...+++||.+.+..+| |+|+|+++|||+|||+++..-++.++ +|. ++.++|+++||+-|+.|+...+..++.
T Consensus 58 p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~---rw~--p~~KiVF~aP~~pLv~QQ~a~~~~~~~ 131 (746)
T KOG0354|consen 58 PTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHF---EWR--PKGKVVFLAPTRPLVNQQIACFSIYLI 131 (746)
T ss_pred cCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHH---hcC--CcceEEEeeCCchHHHHHHHHHhhccC
Confidence 345579999999999999 99999999999999999888888877 332 347799999999999999887877775
Q ss_pred cCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHH-HHHHhCC
Q 004567 164 HHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALN-AIVSQLP 242 (744)
Q Consensus 164 ~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~-~Il~~lp 242 (744)
. ..+....||..+...........+|+|+||+.|.+-|.....-.++.+.++||||||+-....-+..+. ..+..-.
T Consensus 132 ~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~ 209 (746)
T KOG0354|consen 132 P--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKN 209 (746)
T ss_pred c--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhh
Confidence 5 344444454444444456667899999999999988887644446899999999999987665555555 4443333
Q ss_pred CCCcEEEEeeccChhHHHHHHHh------cC---------------CCccccc---------------------------
Q 004567 243 KHRQTFLFSATQTKSVQDLARLS------LK---------------DPQYLSV--------------------------- 274 (744)
Q Consensus 243 ~~~q~ll~SAT~~~~v~~la~~~------l~---------------~p~~i~v--------------------------- 274 (744)
...|+|++|||+.+......... +. ....+.+
T Consensus 210 ~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~ 289 (746)
T KOG0354|consen 210 QGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEE 289 (746)
T ss_pred ccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhc
Confidence 33499999999876533321110 00 0000000
Q ss_pred -----cccc-c----------ccCcc-cccee------------------------------------------------
Q 004567 275 -----HEES-V----------TATPN-RLQQT------------------------------------------------ 289 (744)
Q Consensus 275 -----~~~~-~----------~~~~~-~l~q~------------------------------------------------ 289 (744)
.... . ...+. .-.+.
T Consensus 290 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e 369 (746)
T KOG0354|consen 290 GLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELE 369 (746)
T ss_pred CccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhc
Confidence 0000 0 00000 00000
Q ss_pred ----------------EEEcC--hhhHHHHHHHHHHHh----CCCcEEEEecchHHHHHHHHHHHh-hCCCCcEEEee--
Q 004567 290 ----------------AMIVP--LEQKLDMLWSFIKAH----LNSKILVFLTSCKQVKYVFEAFKK-LRPGIPLMCLY-- 344 (744)
Q Consensus 290 ----------------~~~~~--~~~kl~~L~~lLk~~----~~~k~IVF~~s~~~v~~l~~~L~~-l~~g~~v~~lh-- 344 (744)
+...+ ...|+..|..++..+ ...++||||.++..|..+...|.. ..+++....+-
T Consensus 370 ~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq 449 (746)
T KOG0354|consen 370 ARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQ 449 (746)
T ss_pred chhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeec
Confidence 00000 012344444444332 367899999999999999999984 33444444443
Q ss_pred ------CCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEe
Q 004567 345 ------GRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFL 417 (744)
Q Consensus 345 ------g~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l 417 (744)
.+|++..+.++++.|+. ..+|||||+|++.|||| +.|+.||-||+-.++...+||.|| ||. +.|.+++++
T Consensus 450 ~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI-~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~ 526 (746)
T KOG0354|consen 450 GKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDI-GECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLT 526 (746)
T ss_pred cccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCc-ccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEE
Confidence 37999999999999999 99999999999999999 999999999999999999999999 997 678999998
Q ss_pred CcchH
Q 004567 418 TPTEM 422 (744)
Q Consensus 418 ~~~e~ 422 (744)
+..+.
T Consensus 527 t~~~~ 531 (746)
T KOG0354|consen 527 TGSEV 531 (746)
T ss_pred cchhH
Confidence 85443
No 79
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=3.5e-30 Score=312.21 Aligned_cols=314 Identities=18% Similarity=0.255 Sum_probs=217.4
Q ss_pred CCCCCCcHHHH---HHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHH
Q 004567 84 AGFVKMTDIQR---ASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKA 160 (744)
Q Consensus 84 ~gf~~~t~iQ~---~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~ 160 (744)
..|...-|+.. +.+..+..++.+|++|+||||||.. +|.+.. ...+. ....+++.-|.|--|..++..+
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~ll--e~~~~--~~~~I~~tQPRRlAA~svA~Rv-- 131 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQ--LPKICL--ELGRG--SHGLIGHTQPRRLAARTVAQRI-- 131 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHH--HcCCC--CCceEecCCccHHHHHHHHHHH--
Confidence 34443344433 3334444556688999999999995 675532 22211 1224455557776665544433
Q ss_pred hhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCch-hhhccchHHH-HHHHH
Q 004567 161 VGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEAD-RILDVGFKKA-LNAIV 238 (744)
Q Consensus 161 ~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh-~lld~gf~~~-l~~Il 238 (744)
+...+..+|..+|. .+..+......+.|+|+|||+|++.+...+. ++++++||||||| +.++.+|.-. +..++
T Consensus 132 -A~elg~~lG~~VGY--~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~--L~~~~~IIIDEaHERsL~~D~LL~lLk~il 206 (1283)
T TIGR01967 132 -AEELGTPLGEKVGY--KVRFHDQVSSNTLVKLMTDGILLAETQQDRF--LSRYDTIIIDEAHERSLNIDFLLGYLKQLL 206 (1283)
T ss_pred -HHHhCCCcceEEee--EEcCCcccCCCceeeeccccHHHHHhhhCcc--cccCcEEEEcCcchhhccchhHHHHHHHHH
Confidence 33345555666652 2333333456789999999999999987654 5899999999999 7999988765 55565
Q ss_pred HhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcCh------hhHHHHHHHHHHH---h
Q 004567 239 SQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPL------EQKLDMLWSFIKA---H 309 (744)
Q Consensus 239 ~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~------~~kl~~L~~lLk~---~ 309 (744)
... +..|+|+||||++. ..++..+...|. +.+.... ..+...|..... ......+...+.. .
T Consensus 207 ~~r-pdLKlIlmSATld~--~~fa~~F~~apv-I~V~Gr~-----~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~ 277 (1283)
T TIGR01967 207 PRR-PDLKIIITSATIDP--ERFSRHFNNAPI-IEVSGRT-----YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAE 277 (1283)
T ss_pred hhC-CCCeEEEEeCCcCH--HHHHHHhcCCCE-EEECCCc-----ccceeEEecccccccchhhhHHHHHHHHHHHHHhh
Confidence 544 46899999999974 466666554443 3333211 123334433321 1233444443332 2
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhhC-CCCcEEEeeCCCCHHHHHHHHHHHhccCCeEEEccccccccccCCCCcEEEEc
Q 004567 310 LNSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFNKAVDWVVQV 388 (744)
Q Consensus 310 ~~~k~IVF~~s~~~v~~l~~~L~~l~-~g~~v~~lhg~~~~~~R~~i~~~F~~~~~VLVaTdv~arGlDi~p~V~~VI~~ 388 (744)
..+.+|||+++..+++.+++.|.... +++.++.+||+|++.+|..++..+. ..+||||||++++|||| |+|++||++
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~-~rkIVLATNIAEtSLTI-pgV~yVIDs 355 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHS-GRRIVLATNVAETSLTV-PGIHYVIDT 355 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCC-CceEEEeccHHHhcccc-CCeeEEEeC
Confidence 46899999999999999999998753 3567999999999999999865432 46899999999999999 999999999
Q ss_pred CC------------------CCCHhHHHHHhhccCcCCCCCeEEEEeCcchH
Q 004567 389 DC------------------PEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 422 (744)
Q Consensus 389 d~------------------P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~ 422 (744)
+. |.|.++|+||+|||||.| +|.|+.+++..+.
T Consensus 356 Gl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 356 GTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred CCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 84 346789999999999997 9999999987654
No 80
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=3e-30 Score=295.29 Aligned_cols=337 Identities=21% Similarity=0.261 Sum_probs=252.2
Q ss_pred HCCCCCCcHHHHHHHHHHHcC-CCEEEEccCCCchhHHhHHHHHHHHHhcc---CCCCCCceEEEEcCChHHHHHHHHHH
Q 004567 83 DAGFVKMTDIQRASLPHSLCG-RDILGAAKTGSGKTLAFVIPVLEKLYKER---WGPEDGVGSIIISPTRELADQLFDVL 158 (744)
Q Consensus 83 ~~gf~~~t~iQ~~aip~il~g-~dvlv~a~TGSGKTla~llpil~~L~~~~---~~~~~g~~aLIl~PtreLa~Qi~~~l 158 (744)
-++|..++.+|..++|.+... .|+|+|||||||||-.|++.||..+.... ....++.++++|+|+++||..+++.+
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~ 184 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKF 184 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHH
Confidence 368889999999999999864 78999999999999999999999886521 12346788999999999999999988
Q ss_pred HHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCC---CCCCCCceEEEEcCchhhhccchHHHHH
Q 004567 159 KAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETP---NFDCSQLQILILDEADRILDVGFKKALN 235 (744)
Q Consensus 159 ~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~---~~~~~~l~~lVlDEAh~lld~gf~~~l~ 235 (744)
.+-....++++..++|+..-.+.+ ...++|||+||+.+- .+.+.. .--++.+.+|||||+|.+-+ ..++.++
T Consensus 185 ~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwD-vvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpvlE 259 (1230)
T KOG0952|consen 185 SKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWD-VVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPVLE 259 (1230)
T ss_pred hhhcccccceEEEecCcchhhHHH---HHhcCEEEeccccee-eeeeeeccchhhhhheeeEEeeeehhhcC-cccchHH
Confidence 887778899999999943332222 678999999999973 232221 11257789999999996544 4677777
Q ss_pred HHHHhC-------CCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChh---h--------
Q 004567 236 AIVSQL-------PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLE---Q-------- 297 (744)
Q Consensus 236 ~Il~~l-------p~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~---~-------- 297 (744)
.|+..+ ....+++++|||+|+-. +++...-.+ .+..+-.-.....|-.+.+.++..... .
T Consensus 260 tiVaRtlr~vessqs~IRivgLSATlPN~e-DvA~fL~vn-~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~ 337 (1230)
T KOG0952|consen 260 TIVARTLRLVESSQSMIRIVGLSATLPNYE-DVARFLRVN-PYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEV 337 (1230)
T ss_pred HHHHHHHHHHHhhhhheEEEEeeccCCCHH-HHHHHhcCC-CccceeeecccccccceeeeEEeeecccchhhhhhHHHH
Confidence 776654 34578999999999754 444432222 333333333345566677776665544 1
Q ss_pred HHHHHHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhC----------C-----------CCcEEEeeCCCCHHHHHHHH
Q 004567 298 KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLR----------P-----------GIPLMCLYGRMKQDRRMAIY 356 (744)
Q Consensus 298 kl~~L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~----------~-----------g~~v~~lhg~~~~~~R~~i~ 356 (744)
..+.+.+++.. +..++|||.++..+...++.|.... + ...+..+|++|.-.+|..+.
T Consensus 338 ~~~kv~e~~~~--g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E 415 (1230)
T KOG0952|consen 338 CYDKVVEFLQE--GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVE 415 (1230)
T ss_pred HHHHHHHHHHc--CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHH
Confidence 23344455544 6899999999998888888886642 1 13367799999999999999
Q ss_pred HHHhc-cCCeEEEccccccccccCCCCcEEEEcCCCC-----------CHhHHHHHhhccCcC--CCCCeEEEEeCcchH
Q 004567 357 AQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPE-----------DVASYIHRVGRTARY--NSGGRSVLFLTPTEM 422 (744)
Q Consensus 357 ~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~P~-----------s~~~yiQRiGRagR~--g~~G~~il~l~~~e~ 422 (744)
..|.. ...||+||..++.|+|+ | ..+||.-+.+. +.-+.+|..|||||- +..|.++++.+..-.
T Consensus 416 ~~F~~G~i~vL~cTaTLAwGVNL-P-A~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl 493 (1230)
T KOG0952|consen 416 KEFKEGHIKVLCCTATLAWGVNL-P-AYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKL 493 (1230)
T ss_pred HHHhcCCceEEEecceeeeccCC-c-ceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHH
Confidence 99999 89999999999999999 8 68888766542 567889999999996 457999999888776
Q ss_pred HHHHHHHH
Q 004567 423 KMLEKLRE 430 (744)
Q Consensus 423 ~~l~~l~~ 430 (744)
.....|..
T Consensus 494 ~~Y~sLl~ 501 (1230)
T KOG0952|consen 494 DHYESLLT 501 (1230)
T ss_pred HHHHHHHc
Confidence 54444444
No 81
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.97 E-value=1.6e-28 Score=293.33 Aligned_cols=338 Identities=18% Similarity=0.231 Sum_probs=225.9
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccC
Q 004567 88 KMTDIQRASLPHSLCG--RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH 165 (744)
Q Consensus 88 ~~t~iQ~~aip~il~g--~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~ 165 (744)
.|.|||..++..++.. ..+|++..+|.|||+.+.+.+.+.+.+. ...++|||||+ .|..||...+.+..
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g-----~~~rvLIVvP~-sL~~QW~~El~~kF--- 222 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG-----RAERVLILVPE-TLQHQWLVEMLRRF--- 222 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC-----CCCcEEEEcCH-HHHHHHHHHHHHHh---
Confidence 5999999998777653 4699999999999998765555544332 34579999998 89999999986543
Q ss_pred CceEEEEEcCccChHHH---HHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhcc-----chHHHHHHH
Q 004567 166 NFSAGLLIGGRRDVDME---KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDV-----GFKKALNAI 237 (744)
Q Consensus 166 ~~~~~~l~Gg~~~~~~e---~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~-----gf~~~l~~I 237 (744)
++...++.+ ....... ...+...+++|||.+.+...-.....+.-..+++||+||||++-.. ..+..+..+
T Consensus 223 ~l~~~i~~~-~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~L 301 (956)
T PRK04914 223 NLRFSLFDE-ERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQL 301 (956)
T ss_pred CCCeEEEcC-cchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHH
Confidence 233333332 2211110 0122356899999998764211111122347899999999998621 112222222
Q ss_pred HHhCCCCCcEEEEeeccCh-hHH-HHHHHhcCCCccccc-----------------------------------------
Q 004567 238 VSQLPKHRQTFLFSATQTK-SVQ-DLARLSLKDPQYLSV----------------------------------------- 274 (744)
Q Consensus 238 l~~lp~~~q~ll~SAT~~~-~v~-~la~~~l~~p~~i~v----------------------------------------- 274 (744)
. .....++++|||+-. ... .++.+.+-+|..+.-
T Consensus 302 a---~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~ 378 (956)
T PRK04914 302 A---EVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGE 378 (956)
T ss_pred h---hccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcc
Confidence 2 234579999999642 111 111111111111100
Q ss_pred -----------------------------------------cccccccCccccceeEE----------------------
Q 004567 275 -----------------------------------------HEESVTATPNRLQQTAM---------------------- 291 (744)
Q Consensus 275 -----------------------------------------~~~~~~~~~~~l~q~~~---------------------- 291 (744)
....+...|.+..+.+.
T Consensus 379 ~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~ 458 (956)
T PRK04914 379 QDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDM 458 (956)
T ss_pred cchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhh
Confidence 00000001111111110
Q ss_pred ---------------EcChhhHHHHHHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHH
Q 004567 292 ---------------IVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIY 356 (744)
Q Consensus 292 ---------------~~~~~~kl~~L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~ 356 (744)
......|+..|..+++.+...|+||||+++..+..+.+.|+.. .|+.+..+||+|++.+|..++
T Consensus 459 l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~-~Gi~~~~ihG~~s~~eR~~~~ 537 (956)
T PRK04914 459 LYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRER-EGIRAAVFHEGMSIIERDRAA 537 (956)
T ss_pred cCHHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc-cCeeEEEEECCCCHHHHHHHH
Confidence 0112246667888888877899999999999999999999643 389999999999999999999
Q ss_pred HHHhc---cCCeEEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchH---HHHHHHHH
Q 004567 357 AQFCE---KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM---KMLEKLRE 430 (744)
Q Consensus 357 ~~F~~---~~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~---~~l~~l~~ 430 (744)
..|++ ...|||||+++++|+|| +.+++||+||+|+++..|.||+||++|.|+.|.+.+++...+. ..+..+..
T Consensus 538 ~~F~~~~~~~~VLIsTdvgseGlNl-q~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~ 616 (956)
T PRK04914 538 AYFADEEDGAQVLLCSEIGSEGRNF-QFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYH 616 (956)
T ss_pred HHHhcCCCCccEEEechhhccCCCc-ccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHh
Confidence 99987 47899999999999999 9999999999999999999999999999999988777655433 45555555
Q ss_pred cCCCcccccc
Q 004567 431 AKIPIHFTKA 440 (744)
Q Consensus 431 ~~i~i~~~~~ 440 (744)
.++.+-...+
T Consensus 617 ~~l~ife~~~ 626 (956)
T PRK04914 617 EGLNAFEHTC 626 (956)
T ss_pred hhcCceeccC
Confidence 5665544433
No 82
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=4.2e-29 Score=252.49 Aligned_cols=202 Identities=44% Similarity=0.699 Sum_probs=178.9
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCC
Q 004567 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPT 147 (744)
Q Consensus 68 F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~Pt 147 (744)
|+++++++.+.+.|.+.||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+.... ...+.++||++||
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~--~~~~~~viii~p~ 78 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP--KKDGPQALILAPT 78 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc--ccCCceEEEEcCC
Confidence 78899999999999999999999999999999999999999999999999999999999987652 1246789999999
Q ss_pred hHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhc
Q 004567 148 RELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILD 227 (744)
Q Consensus 148 reLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld 227 (744)
++|+.|+...+..+....++.+..+.|+............+++|+||||++|.+++... .+.+.+++++|+||||.+.+
T Consensus 79 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~l~~lIvDE~h~~~~ 157 (203)
T cd00268 79 RELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERG-KLDLSKVKYLVLDEADRMLD 157 (203)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC-CCChhhCCEEEEeChHHhhc
Confidence 99999999999999888888888898844333333333348999999999999988876 46788999999999999999
Q ss_pred cchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccc
Q 004567 228 VGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYL 272 (744)
Q Consensus 228 ~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i 272 (744)
.+|...+..++..++..+|++++|||+++.+..+...++.+|.++
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 158 MGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred cChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 999999999999999999999999999999999998888888765
No 83
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=2.1e-28 Score=274.61 Aligned_cols=344 Identities=21% Similarity=0.290 Sum_probs=258.8
Q ss_pred CCCCHHHHHH-HHHCCCCCCcHHHHHHHHHHHcC------CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEE
Q 004567 71 LPISKKTKSG-LKDAGFVKMTDIQRASLPHSLCG------RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSII 143 (744)
Q Consensus 71 l~ls~~~~~~-L~~~gf~~~t~iQ~~aip~il~g------~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLI 143 (744)
++.+..++.. +....| .||..|++++..|... .+-|++|.-|||||+++++.++..+ ..|.++..
T Consensus 245 ~~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai-------~~G~Q~AL 316 (677)
T COG1200 245 LPANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAI-------EAGYQAAL 316 (677)
T ss_pred CCccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHH-------HcCCeeEE
Confidence 3445554444 466788 8999999999998863 4578999999999999999999887 56899999
Q ss_pred EcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHH----HhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEE
Q 004567 144 ISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEK----EHVNELNILVCTPGRLLQHMDETPNFDCSQLQILIL 219 (744)
Q Consensus 144 l~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~----~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVl 219 (744)
++||--||.|.+..+.++....++.+++++|..+...... ...+..+|+|||-.-+ +. ...+.++.++|+
T Consensus 317 MAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi-----Qd-~V~F~~LgLVIi 390 (677)
T COG1200 317 MAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI-----QD-KVEFHNLGLVII 390 (677)
T ss_pred eccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh-----hc-ceeecceeEEEE
Confidence 9999999999999999999999999999999544333222 2224699999994322 22 455699999999
Q ss_pred cCchhhhccchHHHHHHHHHhCCC-CCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhH
Q 004567 220 DEADRILDVGFKKALNAIVSQLPK-HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK 298 (744)
Q Consensus 220 DEAh~lld~gf~~~l~~Il~~lp~-~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~k 298 (744)
||=|| |+-.=...+..-.. .+.++.||||+-+..-.+. .+.+-..-.+..-..... -.+.+++ ...+
T Consensus 391 DEQHR-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt--~fgDldvS~IdElP~GRk---pI~T~~i--~~~~ 458 (677)
T COG1200 391 DEQHR-----FGVHQRLALREKGEQNPHVLVMTATPIPRTLALT--AFGDLDVSIIDELPPGRK---PITTVVI--PHER 458 (677)
T ss_pred ecccc-----ccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHH--HhccccchhhccCCCCCC---ceEEEEe--cccc
Confidence 99999 44444444544444 6789999999765543333 333322222222111111 1222222 2244
Q ss_pred HHHHHHHHHHh--CCCcEEEEecchH--------HHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEE
Q 004567 299 LDMLWSFIKAH--LNSKILVFLTSCK--------QVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLF 367 (744)
Q Consensus 299 l~~L~~lLk~~--~~~k~IVF~~s~~--------~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLV 367 (744)
...++.++... .+.++.|.|+-.+ .|..+++.|+..+|++.+..+||+|+..++.+++..|++ ...|||
T Consensus 459 ~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILV 538 (677)
T COG1200 459 RPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILV 538 (677)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEE
Confidence 55566666543 3789999998654 577888999988999999999999999999999999999 999999
Q ss_pred EccccccccccCCCCcEEEEcCC-CCCHhHHHHHhhccCcCCCCCeEEEEeCcch----HHHHHHHHHc--CCCcccccc
Q 004567 368 CTDVASRGLDFNKAVDWVVQVDC-PEDVASYIHRVGRTARYNSGGRSVLFLTPTE----MKMLEKLREA--KIPIHFTKA 440 (744)
Q Consensus 368 aTdv~arGlDi~p~V~~VI~~d~-P~s~~~yiQRiGRagR~g~~G~~il~l~~~e----~~~l~~l~~~--~i~i~~~~~ 440 (744)
||.|++.|||+ |+.++.|..+. ....++..|-.||+||.+..+.|++++.+.. ...++-+.+. |..|.+..+
T Consensus 539 aTTVIEVGVdV-PnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t~DGF~IAE~DL 617 (677)
T COG1200 539 ATTVIEVGVDV-PNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRETTDGFVIAEEDL 617 (677)
T ss_pred EeeEEEecccC-CCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhcCCcceehhhhH
Confidence 99999999999 99999998886 4588999999999999999999999998876 3566666665 666666554
Q ss_pred c
Q 004567 441 N 441 (744)
Q Consensus 441 ~ 441 (744)
.
T Consensus 618 k 618 (677)
T COG1200 618 K 618 (677)
T ss_pred h
Confidence 3
No 84
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.96 E-value=4e-28 Score=251.10 Aligned_cols=335 Identities=20% Similarity=0.303 Sum_probs=257.3
Q ss_pred CCCCCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEc
Q 004567 67 RFDQLPISKKTKSGLKD-AGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIIS 145 (744)
Q Consensus 67 ~F~~l~ls~~~~~~L~~-~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~ 145 (744)
.=+++|+|....+.|+. +....++|.|..+|+..+.|.|+++..|||.||++||.+|+|.. ...+||||
T Consensus 72 dkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a----------dg~alvi~ 141 (695)
T KOG0353|consen 72 DKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA----------DGFALVIC 141 (695)
T ss_pred ccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc----------CCceEeec
Confidence 34678999999999976 67889999999999999999999999999999999999999854 34589999
Q ss_pred CChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHh--------cCCCcEEEEChHHHHH------HHhcCCCCCC
Q 004567 146 PTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEH--------VNELNILVCTPGRLLQ------HMDETPNFDC 211 (744)
Q Consensus 146 PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~--------~~~~~IlV~TPgrLl~------~l~~~~~~~~ 211 (744)
|...|.....-+++.+| +....+.. ..+ +.+..+ .....+++.||+.+.. .+.. .+..
T Consensus 142 plislmedqil~lkqlg----i~as~lna-nss-ke~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnklek--a~~~ 213 (695)
T KOG0353|consen 142 PLISLMEDQILQLKQLG----IDASMLNA-NSS-KEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEK--ALEA 213 (695)
T ss_pred hhHHHHHHHHHHHHHhC----cchhhccC-ccc-HHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHH--Hhhc
Confidence 99999988777888776 44444444 222 121111 1357899999998643 2222 3456
Q ss_pred CCceEEEEcCchhhhccc--hHHHHHH--HHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccc
Q 004567 212 SQLQILILDEADRILDVG--FKKALNA--IVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQ 287 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~g--f~~~l~~--Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~ 287 (744)
..+.+|.+||+|++..|| |++.+.. |+...-+...+++++||.++.+.+-+...+.-...+..... ....++.
T Consensus 214 ~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~---fnr~nl~ 290 (695)
T KOG0353|consen 214 GFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAG---FNRPNLK 290 (695)
T ss_pred ceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecc---cCCCCce
Confidence 778999999999999998 5544433 34333356789999999999887766654432222222211 1122333
Q ss_pred eeEEEcC--hhhHHHHHHHHHHHhC-CCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cC
Q 004567 288 QTAMIVP--LEQKLDMLWSFIKAHL-NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KR 363 (744)
Q Consensus 288 q~~~~~~--~~~kl~~L~~lLk~~~-~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~ 363 (744)
..+..-| .++-...+..+|+... +...||||-|.+.++.+...|+.. |+....+|+.|.+.+|..+-+.|.. ..
T Consensus 291 yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~--gi~a~~yha~lep~dks~~hq~w~a~ei 368 (695)
T KOG0353|consen 291 YEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNH--GIHAGAYHANLEPEDKSGAHQGWIAGEI 368 (695)
T ss_pred eEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhc--CccccccccccCccccccccccccccce
Confidence 3333222 2344566666666433 678899999999999999999986 9999999999999999999999998 89
Q ss_pred CeEEEccccccccccCCCCcEEEEcCCCCCHhHHHH-------------------------------------------H
Q 004567 364 SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIH-------------------------------------------R 400 (744)
Q Consensus 364 ~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQ-------------------------------------------R 400 (744)
.|+|||-..+.|||- |+|++||+..+|.+++.|.| -
T Consensus 369 qvivatvafgmgidk-pdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfseke 447 (695)
T KOG0353|consen 369 QVIVATVAFGMGIDK-PDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKE 447 (695)
T ss_pred EEEEEEeeecccCCC-CCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchh
Confidence 999999999999999 99999999999999999999 6
Q ss_pred hhccCcCCCCCeEEEEeCcchHHHH
Q 004567 401 VGRTARYNSGGRSVLFLTPTEMKML 425 (744)
Q Consensus 401 iGRagR~g~~G~~il~l~~~e~~~l 425 (744)
.||+||.+.+..|++++--.+...+
T Consensus 448 sgragrd~~~a~cilyy~~~difk~ 472 (695)
T KOG0353|consen 448 SGRAGRDDMKADCILYYGFADIFKI 472 (695)
T ss_pred ccccccCCCcccEEEEechHHHHhH
Confidence 7999999999999999987665433
No 85
>PRK09694 helicase Cas3; Provisional
Probab=99.96 E-value=2.9e-27 Score=280.85 Aligned_cols=313 Identities=21% Similarity=0.264 Sum_probs=203.3
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccC-
Q 004567 87 VKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH- 165 (744)
Q Consensus 87 ~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~- 165 (744)
..|+|+|..+......+.-+|+.||||+|||.+++..+...+ .. ....+++|..||+++++|+++.+..+....
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~-~~----~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLI-DQ----GLADSIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHH-Hh----CCCCeEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 379999998865544456689999999999999877666443 22 234679999999999999999988754321
Q ss_pred -CceEEEEEcCccChH-HHH-------------------Hhc-------CCCcEEEEChHHHHHHHhcCCCCCCCCc---
Q 004567 166 -NFSAGLLIGGRRDVD-MEK-------------------EHV-------NELNILVCTPGRLLQHMDETPNFDCSQL--- 214 (744)
Q Consensus 166 -~~~~~~l~Gg~~~~~-~e~-------------------~~~-------~~~~IlV~TPgrLl~~l~~~~~~~~~~l--- 214 (744)
...+.+++|...-.. ... ..+ --.+|+|||+.+++..+.......++.+
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La 439 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLG 439 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhc
Confidence 245666666321000 000 000 1269999999998865544432222333
Q ss_pred -eEEEEcCchhhhccchHHHHHHHHHhCC-CCCcEEEEeeccChhHHH-HHHHhcCC-C-----ccccccc---cc----
Q 004567 215 -QILILDEADRILDVGFKKALNAIVSQLP-KHRQTFLFSATQTKSVQD-LARLSLKD-P-----QYLSVHE---ES---- 278 (744)
Q Consensus 215 -~~lVlDEAh~lld~gf~~~l~~Il~~lp-~~~q~ll~SAT~~~~v~~-la~~~l~~-p-----~~i~v~~---~~---- 278 (744)
++|||||+|.+ +......+..++..+. ....+|+||||+|..... +...+-.. + .|-.+.. ..
T Consensus 440 ~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~ 518 (878)
T PRK09694 440 RSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRF 518 (878)
T ss_pred cCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceee
Confidence 48999999976 4333445555555442 246799999999988765 33322111 0 0111100 00
Q ss_pred -cccCcc--ccceeEEE--c--Ch-hhHHHHHHHHHHH-hCCCcEEEEecchHHHHHHHHHHHhhC-CCCcEEEeeCCCC
Q 004567 279 -VTATPN--RLQQTAMI--V--PL-EQKLDMLWSFIKA-HLNSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMK 348 (744)
Q Consensus 279 -~~~~~~--~l~q~~~~--~--~~-~~kl~~L~~lLk~-~~~~k~IVF~~s~~~v~~l~~~L~~l~-~g~~v~~lhg~~~ 348 (744)
....+. .....+.+ . .. ......+..++.. ..+.++||||||++.++.+|+.|++.. +...+..+||+++
T Consensus 519 ~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~ 598 (878)
T PRK09694 519 DLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFT 598 (878)
T ss_pred eccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCC
Confidence 000000 01111111 1 10 1111222233332 236789999999999999999999763 2367999999999
Q ss_pred HHHHH----HHHHHH-hc-c---CCeEEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCC
Q 004567 349 QDRRM----AIYAQF-CE-K---RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNS 409 (744)
Q Consensus 349 ~~~R~----~i~~~F-~~-~---~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~ 409 (744)
+.+|. .+++.| ++ + ..|||||+++++|||| + ++++|...+| ++.|+||+||++|.++
T Consensus 599 ~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d-~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 599 LNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-D-FDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-C-CCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 99994 567788 43 3 4799999999999999 5 8999998888 7899999999999976
No 86
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=1.2e-27 Score=272.50 Aligned_cols=298 Identities=20% Similarity=0.239 Sum_probs=198.7
Q ss_pred EEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHH----H
Q 004567 107 LGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDM----E 182 (744)
Q Consensus 107 lv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~----e 182 (744)
|+.|+||||||.+|+..+...+ ..|.++||++|+++|+.|+++.|+..+ +..+..++++...... .
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l-------~~g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~ 70 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL-------ALGKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWR 70 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH-------HcCCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHH
Confidence 4789999999999977665554 236789999999999999999998754 3566677774332221 1
Q ss_pred HHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccc---h---HHHHHHHHHhCCCCCcEEEEeeccCh
Q 004567 183 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG---F---KKALNAIVSQLPKHRQTFLFSATQTK 256 (744)
Q Consensus 183 ~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~g---f---~~~l~~Il~~lp~~~q~ll~SAT~~~ 256 (744)
....+..+|+|||+..++ ..+.++++|||||+|...-.+ . ...+..+... ..+.+++++|||++.
T Consensus 71 ~~~~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~-~~~~~vil~SATPsl 141 (505)
T TIGR00595 71 KVKNGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK-KFNCPVVLGSATPSL 141 (505)
T ss_pred HHHcCCCCEEECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH-hcCCCEEEEeCCCCH
Confidence 122346899999998763 245899999999999765322 1 1223333333 357889999999765
Q ss_pred hHHHHHHHhcCCCccccccccccccCccccceeEEEcChhh----HHHHHHHHHHHhC--CCcEEEEecchH--------
Q 004567 257 SVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ----KLDMLWSFIKAHL--NSKILVFLTSCK-------- 322 (744)
Q Consensus 257 ~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~----kl~~L~~lLk~~~--~~k~IVF~~s~~-------- 322 (744)
.....+.. .....+............ ...++...... -...|+..++... +.++|||+|++.
T Consensus 142 es~~~~~~--g~~~~~~l~~r~~~~~~p--~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~ 217 (505)
T TIGR00595 142 ESYHNAKQ--KAYRLLVLTRRVSGRKPP--EVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCR 217 (505)
T ss_pred HHHHHHhc--CCeEEeechhhhcCCCCC--eEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhh
Confidence 43333321 111111111110000011 11111111111 1134555554433 568999965432
Q ss_pred ----------------------------------------------------HHHHHHHHHHhhCCCCcEEEeeCCCCHH
Q 004567 323 ----------------------------------------------------QVKYVFEAFKKLRPGIPLMCLYGRMKQD 350 (744)
Q Consensus 323 ----------------------------------------------------~v~~l~~~L~~l~~g~~v~~lhg~~~~~ 350 (744)
.++.+++.|.+.+|+.++..+|++++..
T Consensus 218 ~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~ 297 (505)
T TIGR00595 218 SCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSR 297 (505)
T ss_pred hCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccC
Confidence 2588999999999999999999999877
Q ss_pred HH--HHHHHHHhc-cCCeEEEccccccccccCCCCcEEEEcCC------CC------CHhHHHHHhhccCcCCCCCeEEE
Q 004567 351 RR--MAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDC------PE------DVASYIHRVGRTARYNSGGRSVL 415 (744)
Q Consensus 351 ~R--~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~------P~------s~~~yiQRiGRagR~g~~G~~il 415 (744)
.+ ..+++.|.+ +..|||+|+++++|+|| |+|++|+.+|. |. ....|+|++||+||.+..|.+++
T Consensus 298 ~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~-~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~vii 376 (505)
T TIGR00595 298 KGAHEALLNQFANGKADILIGTQMIAKGHHF-PNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVII 376 (505)
T ss_pred ccHHHHHHHHHhcCCCCEEEeCcccccCCCC-CcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEE
Confidence 66 899999999 89999999999999999 99999865443 31 24689999999999999999997
Q ss_pred EeCcchHHHHHHH
Q 004567 416 FLTPTEMKMLEKL 428 (744)
Q Consensus 416 ~l~~~e~~~l~~l 428 (744)
.....+...+..+
T Consensus 377 qt~~p~~~~~~~~ 389 (505)
T TIGR00595 377 QTYNPNHPAIQAA 389 (505)
T ss_pred EeCCCCCHHHHHH
Confidence 6544333333333
No 87
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=6e-27 Score=273.02 Aligned_cols=323 Identities=19% Similarity=0.243 Sum_probs=231.0
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhc
Q 004567 84 AGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGK 163 (744)
Q Consensus 84 ~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~ 163 (744)
.|. .|+++|.-.--.+..| -|+.++||+|||++|++|++..++ .|.+++||+||++||.|.++.+..+..
T Consensus 79 lg~-~~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al-------~G~~V~VvTpn~yLA~qd~e~m~~l~~ 148 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAI-------SGRGVHIVTVNDYLAKRDSQWMKPIYE 148 (896)
T ss_pred cCC-CcchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHh-------cCCCEEEEcCCHHHHHHHHHHHHHHhc
Confidence 454 7888887665555555 589999999999999999997763 356799999999999999999999999
Q ss_pred cCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHH-HHHHhcCCCCCC-----CCceEEEEcCchhhh-cc--------
Q 004567 164 HHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRL-LQHMDETPNFDC-----SQLQILILDEADRIL-DV-------- 228 (744)
Q Consensus 164 ~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrL-l~~l~~~~~~~~-----~~l~~lVlDEAh~ll-d~-------- 228 (744)
.+++++++++| +.+.... .....++|+||||++| ++++..+..+++ +.+.++||||||+|+ |.
T Consensus 149 ~lGLtv~~i~g-g~~~~~r-~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIIS 226 (896)
T PRK13104 149 FLGLTVGVIYP-DMSHKEK-QEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIIS 226 (896)
T ss_pred ccCceEEEEeC-CCCHHHH-HHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeee
Confidence 99999999999 4444333 2233689999999999 999987744544 589999999999775 22
Q ss_pred -------chHHHHHHHHHhCCCC--------------CcEEEEeeccChh----------------------------HH
Q 004567 229 -------GFKKALNAIVSQLPKH--------------RQTFLFSATQTKS----------------------------VQ 259 (744)
Q Consensus 229 -------gf~~~l~~Il~~lp~~--------------~q~ll~SAT~~~~----------------------------v~ 259 (744)
.+...+..++..+... .+.+.++-.-... +.
T Consensus 227 g~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~ 306 (896)
T PRK13104 227 GAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVN 306 (896)
T ss_pred CCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHH
Confidence 1334444444444321 1222222210000 00
Q ss_pred HH--HH-HhcCCCccccccc------------------------------------------------------------
Q 004567 260 DL--AR-LSLKDPQYLSVHE------------------------------------------------------------ 276 (744)
Q Consensus 260 ~l--a~-~~l~~p~~i~v~~------------------------------------------------------------ 276 (744)
.. |. ++.++-.|+....
T Consensus 307 ~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMT 386 (896)
T PRK13104 307 AALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMT 386 (896)
T ss_pred HHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCC
Confidence 00 00 1222333331100
Q ss_pred ---------------cccccCcccc------ceeEEEcChhhHHHHHHHHHHH--hCCCcEEEEecchHHHHHHHHHHHh
Q 004567 277 ---------------ESVTATPNRL------QQTAMIVPLEQKLDMLWSFIKA--HLNSKILVFLTSCKQVKYVFEAFKK 333 (744)
Q Consensus 277 ---------------~~~~~~~~~l------~q~~~~~~~~~kl~~L~~lLk~--~~~~k~IVF~~s~~~v~~l~~~L~~ 333 (744)
-.+...|.+. ..-.+......|..++...+.. ..+.++||||+|+..++.++..|.+
T Consensus 387 GTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~ 466 (896)
T PRK13104 387 GTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKK 466 (896)
T ss_pred CCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHH
Confidence 0000111110 1112334455677777776643 3488999999999999999999998
Q ss_pred hCCCCcEEEeeCCCCHHHHHHHHHHHhccCCeEEEccccccccccCC---------------------------------
Q 004567 334 LRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFNK--------------------------------- 380 (744)
Q Consensus 334 l~~g~~v~~lhg~~~~~~R~~i~~~F~~~~~VLVaTdv~arGlDi~p--------------------------------- 380 (744)
. |++...|||.+.+.+|..+.+.|+.+ .|+||||+++||+|| .
T Consensus 467 ~--gi~h~vLnak~~q~Ea~iia~Ag~~G-~VtIATNmAGRGtDI-~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (896)
T PRK13104 467 E--NIKHQVLNAKFHEKEAQIIAEAGRPG-AVTIATNMAGRGTDI-VLGGSLAADLANLPADASEQEKEAVKKEWQKRHD 542 (896)
T ss_pred c--CCCeEeecCCCChHHHHHHHhCCCCC-cEEEeccCccCCcce-ecCCchhhhhhccccchhhHHHHHHHHHhhhhhh
Confidence 6 99999999999999999999999875 499999999999999 4
Q ss_pred -----CCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchH
Q 004567 381 -----AVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 422 (744)
Q Consensus 381 -----~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~ 422 (744)
+==+||-...+.|..---|-.||+||-|.+|.+..|++-.+.
T Consensus 543 ~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 543 EVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred HHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 123788888999999999999999999999999999987654
No 88
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=9.5e-27 Score=271.22 Aligned_cols=322 Identities=23% Similarity=0.270 Sum_probs=232.8
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHH-HHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhh
Q 004567 84 AGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVL-EKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162 (744)
Q Consensus 84 ~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil-~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~ 162 (744)
.|. .|+++|.-+.-.+..|+ |+.++||+|||+++.+|++ ..+ .|.++-|++||..||.|.++.+..+.
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL--------~G~~V~IvTpn~yLA~rd~e~~~~l~ 146 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNAL--------TGKGVHVVTVNDYLAKRDAEWMGPLY 146 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHH--------cCCCEEEEecCHHHHHHHHHHHHHHH
Confidence 565 79999988876666664 9999999999999999995 555 35568899999999999999999999
Q ss_pred ccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHH-HHHHhcCCC-----CCCCCceEEEEcCchhhh-cc-------
Q 004567 163 KHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRL-LQHMDETPN-----FDCSQLQILILDEADRIL-DV------- 228 (744)
Q Consensus 163 ~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrL-l~~l~~~~~-----~~~~~l~~lVlDEAh~ll-d~------- 228 (744)
..+++++++++| +.+....... -.++|+||||++| ++++..+-. +..+.+.++||||||+|+ |.
T Consensus 147 ~~LGlsv~~i~~-~~~~~er~~~-y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLii 224 (830)
T PRK12904 147 EFLGLSVGVILS-GMSPEERREA-YAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLII 224 (830)
T ss_pred hhcCCeEEEEcC-CCCHHHHHHh-cCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceee
Confidence 999999999999 4444433333 3599999999999 899876632 236788999999999765 22
Q ss_pred --------chHHHHHHHHHhCCCC--------CcEEEEeecc--------------C-------hhHHH-H-HH-HhcCC
Q 004567 229 --------GFKKALNAIVSQLPKH--------RQTFLFSATQ--------------T-------KSVQD-L-AR-LSLKD 268 (744)
Q Consensus 229 --------gf~~~l~~Il~~lp~~--------~q~ll~SAT~--------------~-------~~v~~-l-a~-~~l~~ 268 (744)
.+...+..++..+... .+.+.++..- . ..+.. + |. ++..+
T Consensus 225 Sg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d 304 (830)
T PRK12904 225 SGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRD 304 (830)
T ss_pred ECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcC
Confidence 1444555566555321 1222222110 0 00000 0 00 11122
Q ss_pred Cccccc-------cc-----------------------------------------------------------------
Q 004567 269 PQYLSV-------HE----------------------------------------------------------------- 276 (744)
Q Consensus 269 p~~i~v-------~~----------------------------------------------------------------- 276 (744)
-.|+.. +.
T Consensus 305 ~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~ 384 (830)
T PRK12904 305 VDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFRE 384 (830)
T ss_pred CcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHH
Confidence 222210 00
Q ss_pred ---cccccCccccc------eeEEEcChhhHHHHHHHHHHH--hCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeC
Q 004567 277 ---ESVTATPNRLQ------QTAMIVPLEQKLDMLWSFIKA--HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG 345 (744)
Q Consensus 277 ---~~~~~~~~~l~------q~~~~~~~~~kl~~L~~lLk~--~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg 345 (744)
-.+...|.+.. .-.+......|...+...+.. ..+.++||||+|+..++.++..|... |++...|||
T Consensus 385 iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~--gi~~~vLna 462 (830)
T PRK12904 385 IYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKA--GIPHNVLNA 462 (830)
T ss_pred HhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC--CCceEeccC
Confidence 00001111110 112334556788899988865 55789999999999999999999985 999999999
Q ss_pred CCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCC-------------------------------------CcEEEE
Q 004567 346 RMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKA-------------------------------------VDWVVQ 387 (744)
Q Consensus 346 ~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~-------------------------------------V~~VI~ 387 (744)
. +..|...+..|.. ...|+||||+++||+||+-+ ==+||.
T Consensus 463 k--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVig 540 (830)
T PRK12904 463 K--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIG 540 (830)
T ss_pred c--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEe
Confidence 5 7899999999999 89999999999999999221 237899
Q ss_pred cCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchH
Q 004567 388 VDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 422 (744)
Q Consensus 388 ~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~ 422 (744)
...|.|..---|-.||+||-|.+|.+..|++-.+.
T Consensus 541 TerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 541 TERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred cccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 99999999999999999999999999999987654
No 89
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=3e-26 Score=266.51 Aligned_cols=148 Identities=18% Similarity=0.287 Sum_probs=126.8
Q ss_pred CCCCCCHHHHHHHH-----HCCCCCC---cHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCce
Q 004567 69 DQLPISKKTKSGLK-----DAGFVKM---TDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVG 140 (744)
Q Consensus 69 ~~l~ls~~~~~~L~-----~~gf~~~---t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~ 140 (744)
+.+.+...+...+. .+||..| ||+|.++||.++.++++++.++||+|||++|++|++..++. +..
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~-------g~~ 137 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT-------GKP 137 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh-------cCC
Confidence 45568888888877 6899988 99999999999999999999999999999999999988753 235
Q ss_pred EEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHH-HHHHhcCCCCCCC-------
Q 004567 141 SIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRL-LQHMDETPNFDCS------- 212 (744)
Q Consensus 141 aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrL-l~~l~~~~~~~~~------- 212 (744)
++||+||++||.|+++.+..++..+++++++++| +.+........ .++|+|||||+| ++++... .+.++
T Consensus 138 v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~G-G~~~~eq~~~y-~~DIVygTPgRLgfDyLrd~-~~~~~~~~~vqr 214 (970)
T PRK12899 138 VHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVS-GSPLEKRKEIY-QCDVVYGTASEFGFDYLRDN-SIATRKEEQVGR 214 (970)
T ss_pred eEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeC-CCCHHHHHHHc-CCCEEEECCChhHHHHhhCC-CCCcCHHHhhcc
Confidence 8999999999999999999999999999999999 55555554444 699999999999 9998876 34433
Q ss_pred CceEEEEcCchhhh
Q 004567 213 QLQILILDEADRIL 226 (744)
Q Consensus 213 ~l~~lVlDEAh~ll 226 (744)
.+.++||||||.|+
T Consensus 215 ~~~~~IIDEADsmL 228 (970)
T PRK12899 215 GFYFAIIDEVDSIL 228 (970)
T ss_pred cccEEEEechhhhh
Confidence 56899999999776
No 90
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.95 E-value=9.9e-27 Score=261.76 Aligned_cols=294 Identities=21% Similarity=0.327 Sum_probs=206.8
Q ss_pred CCCcHHHHHHHHHHHc----CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhh
Q 004567 87 VKMTDIQRASLPHSLC----GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162 (744)
Q Consensus 87 ~~~t~iQ~~aip~il~----g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~ 162 (744)
..|+++|.+|+..+.. ++..++++|||+|||.+++..+... +..+||||||++|+.||.+.+....
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~----------~~~~Lvlv~~~~L~~Qw~~~~~~~~ 104 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL----------KRSTLVLVPTKELLDQWAEALKKFL 104 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh----------cCCEEEEECcHHHHHHHHHHHHHhc
Confidence 3699999999999998 8899999999999999865555433 2339999999999999997777665
Q ss_pred ccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHhCC
Q 004567 163 KHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP 242 (744)
Q Consensus 163 ~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp 242 (744)
... ..++.+.|+..... ...|.|+|...+...... ..+..+.+.+||+||||++....|......+....+
T Consensus 105 ~~~-~~~g~~~~~~~~~~-------~~~i~vat~qtl~~~~~l-~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~~ 175 (442)
T COG1061 105 LLN-DEIGIYGGGEKELE-------PAKVTVATVQTLARRQLL-DEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAYP 175 (442)
T ss_pred CCc-cccceecCceeccC-------CCcEEEEEhHHHhhhhhh-hhhcccccCEEEEEccccCCcHHHHHHHHhhhcccc
Confidence 322 23344444222111 147999999999875210 123345789999999999987766555555444433
Q ss_pred CCCcEEEEeeccChhHH-HHHHHh-cCCCcccccccccc----ccCccccce----------------------------
Q 004567 243 KHRQTFLFSATQTKSVQ-DLARLS-LKDPQYLSVHEESV----TATPNRLQQ---------------------------- 288 (744)
Q Consensus 243 ~~~q~ll~SAT~~~~v~-~la~~~-l~~p~~i~v~~~~~----~~~~~~l~q---------------------------- 288 (744)
.+++|||++.... .....+ +..|..+.+..... ...|..+..
T Consensus 176 ----~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~ 251 (442)
T COG1061 176 ----RLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARG 251 (442)
T ss_pred ----eeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhh
Confidence 8999999764331 111111 01112211110000 000000000
Q ss_pred --------eEEEcChhhHHHHHHHHHHHh-CCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHH
Q 004567 289 --------TAMIVPLEQKLDMLWSFIKAH-LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF 359 (744)
Q Consensus 289 --------~~~~~~~~~kl~~L~~lLk~~-~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F 359 (744)
.........+...+..++..+ ...+++|||++..++..++..|.. +++ +..+.|..+..+|..+++.|
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~--~~~-~~~it~~t~~~eR~~il~~f 328 (442)
T COG1061 252 TLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLA--PGI-VEAITGETPKEEREAILERF 328 (442)
T ss_pred hhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcC--CCc-eEEEECCCCHHHHHHHHHHH
Confidence 001111223444555566555 367999999999999999999976 466 88999999999999999999
Q ss_pred hc-cCCeEEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcC
Q 004567 360 CE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARY 407 (744)
Q Consensus 360 ~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~ 407 (744)
+. ...+||++.++..|+|+ |+++++|+.....|...|+||+||.-|.
T Consensus 329 r~g~~~~lv~~~vl~EGvDi-P~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 329 RTGGIKVLVTVKVLDEGVDI-PDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred HcCCCCEEEEeeeccceecC-CCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 99 99999999999999999 9999999999999999999999999993
No 91
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.95 E-value=3.1e-25 Score=261.26 Aligned_cols=317 Identities=19% Similarity=0.283 Sum_probs=251.0
Q ss_pred CHHHHHHHHH-CCCCCCcHHHHHHHHHHHc----C--CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcC
Q 004567 74 SKKTKSGLKD-AGFVKMTDIQRASLPHSLC----G--RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISP 146 (744)
Q Consensus 74 s~~~~~~L~~-~gf~~~t~iQ~~aip~il~----g--~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~P 146 (744)
+......+.. ++| .-|+=|..||..+.. + .|-|+||.-|-|||-+++-+++... .+|++|.|+||
T Consensus 580 d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV-------~~GKQVAvLVP 651 (1139)
T COG1197 580 DTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAV-------MDGKQVAVLVP 651 (1139)
T ss_pred ChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHh-------cCCCeEEEEcc
Confidence 3444444433 566 679999999998875 3 6899999999999999988888776 57899999999
Q ss_pred ChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhc-----CCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcC
Q 004567 147 TRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV-----NELNILVCTPGRLLQHMDETPNFDCSQLQILILDE 221 (744)
Q Consensus 147 treLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~-----~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDE 221 (744)
|.-||.|.|+.|+.-...+++++..+.. -.+.++....+ +..+|||||- +|+ ...+.+.++.++||||
T Consensus 652 TTlLA~QHy~tFkeRF~~fPV~I~~LSR-F~s~kE~~~il~~la~G~vDIvIGTH-rLL-----~kdv~FkdLGLlIIDE 724 (1139)
T COG1197 652 TTLLAQQHYETFKERFAGFPVRIEVLSR-FRSAKEQKEILKGLAEGKVDIVIGTH-RLL-----SKDVKFKDLGLLIIDE 724 (1139)
T ss_pred cHHhHHHHHHHHHHHhcCCCeeEEEecc-cCCHHHHHHHHHHHhcCCccEEEech-Hhh-----CCCcEEecCCeEEEec
Confidence 9999999999999988999999988876 44444443333 5799999993 222 2356779999999999
Q ss_pred chhhhccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccc-eeEEEcChhh--H
Q 004567 222 ADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQ-QTAMIVPLEQ--K 298 (744)
Q Consensus 222 Ah~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~-q~~~~~~~~~--k 298 (744)
-|| |+-.-..-+..+..+..++-+|||+-+..-.++-.++++-..|...+. .++. +.|+ .+... -
T Consensus 725 EqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~------~R~pV~T~V-~~~d~~~i 792 (1139)
T COG1197 725 EQR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPE------DRLPVKTFV-SEYDDLLI 792 (1139)
T ss_pred hhh-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCC------CCcceEEEE-ecCChHHH
Confidence 998 455555566667778889999999888877777777777666544322 2222 2332 22222 1
Q ss_pred HHHHHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccc
Q 004567 299 LDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLD 377 (744)
Q Consensus 299 l~~L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlD 377 (744)
-+++..-+.+ ++++...+|.++..+.+.+.|+.+.|...+...||.|+..+-..++..|-+ ..+|||||.+++.|||
T Consensus 793 reAI~REl~R--gGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGID 870 (1139)
T COG1197 793 REAILRELLR--GGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGID 870 (1139)
T ss_pred HHHHHHHHhc--CCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcC
Confidence 2233333322 688999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCCCcEEEEcCCC-CCHhHHHHHhhccCcCCCCCeEEEEeCcc
Q 004567 378 FNKAVDWVVQVDCP-EDVASYIHRVGRTARYNSGGRSVLFLTPT 420 (744)
Q Consensus 378 i~p~V~~VI~~d~P-~s~~~yiQRiGRagR~g~~G~~il~l~~~ 420 (744)
| |+++.+|.-+.- ...++..|..||+||.++.+.|++++.+.
T Consensus 871 I-PnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 871 I-PNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred C-CCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 9 999998877653 47899999999999999999999999874
No 92
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=1.2e-25 Score=260.16 Aligned_cols=355 Identities=19% Similarity=0.225 Sum_probs=256.2
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC-CCEEEEccCCCchhHHhHHHHHHHHHhccCC----CCCCceEEEEcC
Q 004567 72 PISKKTKSGLKDAGFVKMTDIQRASLPHSLCG-RDILGAAKTGSGKTLAFVIPVLEKLYKERWG----PEDGVGSIIISP 146 (744)
Q Consensus 72 ~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g-~dvlv~a~TGSGKTla~llpil~~L~~~~~~----~~~g~~aLIl~P 146 (744)
.++.+-..++ .|...++++|....+.++.+ .++++|||||+|||-.+++-+|+.+-.+... ....-++++++|
T Consensus 295 elP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 4666666665 46667999999999999987 5799999999999999999999998654321 012346899999
Q ss_pred ChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCC-CCCceEEEEcCchhh
Q 004567 147 TRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFD-CSQLQILILDEADRI 225 (744)
Q Consensus 147 treLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~-~~~l~~lVlDEAh~l 225 (744)
..+|+..|...|.+....+++.++-++|++.. ....+.+.+|+||||+..--.-+...... .+-++++|+||.|.+
T Consensus 373 mKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l---~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLL 449 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPLGITVLELTGDSQL---GKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLL 449 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEecccccc---hhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhc
Confidence 99999999999999889999999999995432 23345678999999999843333322221 235688999999965
Q ss_pred hccchHHHHHHHHHhC-------CCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhH
Q 004567 226 LDVGFKKALNAIVSQL-------PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK 298 (744)
Q Consensus 226 ld~gf~~~l~~Il~~l-------p~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~k 298 (744)
- ...++.+..|+... ...++.+++|||+|+-.. .+.....++.-+.. -+....|..+.|.|+.+.....
T Consensus 450 h-DdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~D-V~~Fl~v~~~glf~--fd~syRpvPL~qq~Igi~ek~~ 525 (1674)
T KOG0951|consen 450 H-DDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYED-VASFLRVDPEGLFY--FDSSYRPVPLKQQYIGITEKKP 525 (1674)
T ss_pred c-cccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhh-hHHHhccCcccccc--cCcccCcCCccceEeccccCCc
Confidence 3 34567776665443 235789999999998643 33322223322221 1223456677888877765432
Q ss_pred H---H----HHHHH-HHHhCCCcEEEEecchHHHHHHHHHHHhhC-----------------------------------
Q 004567 299 L---D----MLWSF-IKAHLNSKILVFLTSCKQVKYVFEAFKKLR----------------------------------- 335 (744)
Q Consensus 299 l---~----~L~~l-Lk~~~~~k~IVF~~s~~~v~~l~~~L~~l~----------------------------------- 335 (744)
+ . +.++- +.....+++|||+.|++++...+..++..+
T Consensus 526 ~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdL 605 (1674)
T KOG0951|consen 526 LKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDL 605 (1674)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHH
Confidence 2 2 23333 333346899999999998877777766210
Q ss_pred CCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCcEEEE-----cCC------CCCHhHHHHHhhc
Q 004567 336 PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQ-----VDC------PEDVASYIHRVGR 403 (744)
Q Consensus 336 ~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~-----~d~------P~s~~~yiQRiGR 403 (744)
-.+.+..+|+||+..+|..+.+.|.. ...|||+|..+++|+|+ | .+.||. ||+ +.++.+.+||.||
T Consensus 606 LpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnl-p-ahtViikgtqvy~pekg~w~elsp~dv~qmlgr 683 (1674)
T KOG0951|consen 606 LPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNL-P-AHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGR 683 (1674)
T ss_pred hhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCC-C-cceEEecCccccCcccCccccCCHHHHHHHHhh
Confidence 13458889999999999999999999 89999999999999999 8 466665 333 3488999999999
Q ss_pred cCcCCC--CCeEEEEeCcchHHHHHHHHHcCCCccc
Q 004567 404 TARYNS--GGRSVLFLTPTEMKMLEKLREAKIPIHF 437 (744)
Q Consensus 404 agR~g~--~G~~il~l~~~e~~~l~~l~~~~i~i~~ 437 (744)
+||-+- .|..++....+|..+...+-+..+|++.
T Consensus 684 agrp~~D~~gegiiit~~se~qyyls~mn~qLpies 719 (1674)
T KOG0951|consen 684 AGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIES 719 (1674)
T ss_pred cCCCccCcCCceeeccCchHhhhhHHhhhhcCCChH
Confidence 999754 5788888888888666565555666554
No 93
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1.6e-25 Score=259.96 Aligned_cols=324 Identities=22% Similarity=0.260 Sum_probs=224.0
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhc
Q 004567 84 AGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGK 163 (744)
Q Consensus 84 ~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~ 163 (744)
.|. .|+++|.-+.-.+..|+ |+...||+|||+++.+|++-.. ..|.++-|++||--||.|-++.+..+..
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~a-------l~G~~v~vvT~neyLA~Rd~e~~~~~~~ 146 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNA-------LTGKGVHVVTVNEYLSSRDATEMGELYR 146 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHH-------HcCCCeEEEeccHHHHHhhHHHHHHHHH
Confidence 565 89999988877776776 9999999999999998887665 3578899999999999999999999999
Q ss_pred cCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHH-HHHhcCC-----CCCCCCceEEEEcCchhhh-ccc-------
Q 004567 164 HHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLL-QHMDETP-----NFDCSQLQILILDEADRIL-DVG------- 229 (744)
Q Consensus 164 ~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl-~~l~~~~-----~~~~~~l~~lVlDEAh~ll-d~g------- 229 (744)
.+|+++++++| ..+.. +....-.++|++||...|- +.|+.+- ....+.+.+.||||+|.++ |..
T Consensus 147 ~LGl~vg~i~~-~~~~~-~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiis 224 (796)
T PRK12906 147 WLGLTVGLNLN-SMSPD-EKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIIS 224 (796)
T ss_pred hcCCeEEEeCC-CCCHH-HHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecC
Confidence 99999999988 33332 3444557899999998752 2333221 1123567899999999654 211
Q ss_pred --------hHHHHHHHHHhCCCC-------------------CcEEEEeec--------------c-------ChhHHH-
Q 004567 230 --------FKKALNAIVSQLPKH-------------------RQTFLFSAT--------------Q-------TKSVQD- 260 (744)
Q Consensus 230 --------f~~~l~~Il~~lp~~-------------------~q~ll~SAT--------------~-------~~~v~~- 260 (744)
+...+..++..+... .+.+.++.. . ...+..
T Consensus 225 g~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~A 304 (796)
T PRK12906 225 GQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQA 304 (796)
T ss_pred CCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHH
Confidence 233333444333211 111111110 0 000000
Q ss_pred H-HH-HhcCCCccccccc--------------------------------------------------------------
Q 004567 261 L-AR-LSLKDPQYLSVHE-------------------------------------------------------------- 276 (744)
Q Consensus 261 l-a~-~~l~~p~~i~v~~-------------------------------------------------------------- 276 (744)
+ |. ++..+-.|+....
T Consensus 305 l~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGT 384 (796)
T PRK12906 305 LRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGT 384 (796)
T ss_pred HHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCC
Confidence 0 10 1112222221000
Q ss_pred -------------cccccCccccc------eeEEEcChhhHHHHHHHHHHHh--CCCcEEEEecchHHHHHHHHHHHhhC
Q 004567 277 -------------ESVTATPNRLQ------QTAMIVPLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLR 335 (744)
Q Consensus 277 -------------~~~~~~~~~l~------q~~~~~~~~~kl~~L~~lLk~~--~~~k~IVF~~s~~~v~~l~~~L~~l~ 335 (744)
-.+...|.+.. ...+..+...|...+...+... .+.++||||+|+..++.++..|.+.
T Consensus 385 a~~e~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~- 463 (796)
T PRK12906 385 AKTEEEEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEA- 463 (796)
T ss_pred CHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHC-
Confidence 00001111111 1123334567888888888543 5899999999999999999999986
Q ss_pred CCCcEEEeeCCCCHHHHHHHHHHHhccCCeEEEccccccccccC--CCCc-----EEEEcCCCCCHhHHHHHhhccCcCC
Q 004567 336 PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFN--KAVD-----WVVQVDCPEDVASYIHRVGRTARYN 408 (744)
Q Consensus 336 ~g~~v~~lhg~~~~~~R~~i~~~F~~~~~VLVaTdv~arGlDi~--p~V~-----~VI~~d~P~s~~~yiQRiGRagR~g 408 (744)
+++...+||++.+.++..+...++ ...|+|||++++||+||+ ++|. +||+++.|.+...|.|++|||||.|
T Consensus 464 -gi~~~~Lna~~~~~Ea~ii~~ag~-~g~VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG 541 (796)
T PRK12906 464 -GIPHAVLNAKNHAKEAEIIMNAGQ-RGAVTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQG 541 (796)
T ss_pred -CCCeeEecCCcHHHHHHHHHhcCC-CceEEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCC
Confidence 899999999988666666655554 445999999999999993 3788 9999999999999999999999999
Q ss_pred CCCeEEEEeCcchH
Q 004567 409 SGGRSVLFLTPTEM 422 (744)
Q Consensus 409 ~~G~~il~l~~~e~ 422 (744)
.+|.+..|++..+.
T Consensus 542 ~~G~s~~~~sleD~ 555 (796)
T PRK12906 542 DPGSSRFYLSLEDD 555 (796)
T ss_pred CCcceEEEEeccch
Confidence 99999999988754
No 94
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.7e-25 Score=263.51 Aligned_cols=317 Identities=19% Similarity=0.187 Sum_probs=239.6
Q ss_pred HHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHh
Q 004567 82 KDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAV 161 (744)
Q Consensus 82 ~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~ 161 (744)
...|| .|-++|++++-.+..|..|+++||||||||++...++...+ .+|.++++.+|.++|.+|.+..|...
T Consensus 114 ~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al-------~~~qrviYTsPIKALsNQKyrdl~~~ 185 (1041)
T COG4581 114 REYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALAL-------RDGQRVIYTSPIKALSNQKYRDLLAK 185 (1041)
T ss_pred HhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHH-------HcCCceEeccchhhhhhhHHHHHHHH
Confidence 45677 89999999999999999999999999999999888877776 34667999999999999999888765
Q ss_pred hccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHhC
Q 004567 162 GKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 241 (744)
Q Consensus 162 ~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~l 241 (744)
...+.-.+|+++|+ . .......++|+|.+.|..++..+ ...+..+..||+||+|.|.|...+..+..++-++
T Consensus 186 fgdv~~~vGL~TGD-v------~IN~~A~clvMTTEILRnMlyrg-~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l 257 (1041)
T COG4581 186 FGDVADMVGLMTGD-V------SINPDAPCLVMTTEILRNMLYRG-SESLRDIEWVVFDEVHYIGDRERGVVWEEVIILL 257 (1041)
T ss_pred hhhhhhhccceecc-e------eeCCCCceEEeeHHHHHHHhccC-cccccccceEEEEeeeeccccccchhHHHHHHhc
Confidence 44333346788882 2 23357899999998888877766 5668999999999999999999999999999999
Q ss_pred CCCCcEEEEeeccChhHHHHHHHhcC--CCccccccccccccCccccceeEEEc-------Chhh---------------
Q 004567 242 PKHRQTFLFSATQTKSVQDLARLSLK--DPQYLSVHEESVTATPNRLQQTAMIV-------PLEQ--------------- 297 (744)
Q Consensus 242 p~~~q~ll~SAT~~~~v~~la~~~l~--~p~~i~v~~~~~~~~~~~l~q~~~~~-------~~~~--------------- 297 (744)
|...+++++|||+++....-.|.... .|.++...+ ..|..+.+++... +...
T Consensus 258 P~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~----~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~ 333 (1041)
T COG4581 258 PDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTE----HRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLS 333 (1041)
T ss_pred CCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeec----CCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhh
Confidence 99999999999999987766665533 233332222 1223333333322 0000
Q ss_pred --------------------------------HHHHHHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhC----------
Q 004567 298 --------------------------------KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLR---------- 335 (744)
Q Consensus 298 --------------------------------kl~~L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~---------- 335 (744)
+...+...+......++|+|+-|+..|+..+..+..+-
T Consensus 334 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~ 413 (1041)
T COG4581 334 CFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERA 413 (1041)
T ss_pred ccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHH
Confidence 00112223333335689999999988887776665210
Q ss_pred ----------------CCC-------------cEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCcEE
Q 004567 336 ----------------PGI-------------PLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWV 385 (744)
Q Consensus 336 ----------------~g~-------------~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~V 385 (744)
.++ .+..+|++|-+.-|..+...|+. -..|+|||.+++.|+|. | ++.|
T Consensus 414 i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNm-P-artv 491 (1041)
T COG4581 414 IREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINM-P-ARTV 491 (1041)
T ss_pred HHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCC-c-ccce
Confidence 011 14579999999999999999999 78999999999999999 8 6777
Q ss_pred EEcCC---------CCCHhHHHHHhhccCcCCCC--CeEEEEeCcc
Q 004567 386 VQVDC---------PEDVASYIHRVGRTARYNSG--GRSVLFLTPT 420 (744)
Q Consensus 386 I~~d~---------P~s~~~yiQRiGRagR~g~~--G~~il~l~~~ 420 (744)
|.... +-++..|+|+.|||||.|-+ |.++++-.+.
T Consensus 492 v~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 492 VFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred eeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 76554 34789999999999999974 7777774443
No 95
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=3.5e-25 Score=251.21 Aligned_cols=321 Identities=20% Similarity=0.229 Sum_probs=238.0
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhc
Q 004567 84 AGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGK 163 (744)
Q Consensus 84 ~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~ 163 (744)
.+| .|-..|++||-++..|..|+++|+|.+|||+++-.++.-.- .++.++||.+|-++|.+|-|+.|+....
T Consensus 294 ~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq-------~h~TR~iYTSPIKALSNQKfRDFk~tF~ 365 (1248)
T KOG0947|consen 294 YPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ-------KHMTRTIYTSPIKALSNQKFRDFKETFG 365 (1248)
T ss_pred CCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH-------hhccceEecchhhhhccchHHHHHHhcc
Confidence 456 78999999999999999999999999999998766654332 3678999999999999999999987654
Q ss_pred cCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHhCCC
Q 004567 164 HHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPK 243 (744)
Q Consensus 164 ~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~ 243 (744)
. +++++|+ ........++|+|.+.|..++.++..+ ++++.+|||||+|.+.|...+-.+..++-.+|.
T Consensus 366 D----vgLlTGD-------vqinPeAsCLIMTTEILRsMLYrgadl-iRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~ 433 (1248)
T KOG0947|consen 366 D----VGLLTGD-------VQINPEASCLIMTTEILRSMLYRGADL-IRDVEFVIFDEVHYINDVERGVVWEEVIIMLPR 433 (1248)
T ss_pred c----cceeecc-------eeeCCCcceEeehHHHHHHHHhcccch-hhccceEEEeeeeecccccccccceeeeeeccc
Confidence 3 4478882 223346789999999999998887554 588999999999999999999999999999999
Q ss_pred CCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEE--------------------------------
Q 004567 244 HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAM-------------------------------- 291 (744)
Q Consensus 244 ~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~-------------------------------- 291 (744)
..++|++|||.|+.....-|.+-.....|.|.... ..|-.+.+++.
T Consensus 434 HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~--kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak 511 (1248)
T KOG0947|consen 434 HVNFILLSATVPNTLEFADWIGRTKQKTIYVISTS--KRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAK 511 (1248)
T ss_pred cceEEEEeccCCChHHHHHHhhhccCceEEEEecC--CCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccc
Confidence 99999999999998765555432221111111110 00111111100
Q ss_pred -------------------------Ec-------Ch-hh---HHHHHHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhC
Q 004567 292 -------------------------IV-------PL-EQ---KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLR 335 (744)
Q Consensus 292 -------------------------~~-------~~-~~---kl~~L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~ 335 (744)
.. .. .. -...|...++...--++||||-|++.|+..++.|..+.
T Consensus 512 ~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~n 591 (1248)
T KOG0947|consen 512 FVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLN 591 (1248)
T ss_pred ccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccC
Confidence 00 00 01 12233344444445689999999999999988886541
Q ss_pred ----------------------------C---------CCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccc
Q 004567 336 ----------------------------P---------GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLD 377 (744)
Q Consensus 336 ----------------------------~---------g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlD 377 (744)
| .-.+.++||++-+--+.-+.-.|+. -..|||||-+++.|||
T Consensus 592 L~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVN 671 (1248)
T KOG0947|consen 592 LTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVN 671 (1248)
T ss_pred cccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcC
Confidence 1 1237889999999999999999999 7899999999999999
Q ss_pred cCCCCcEEEEcCCC---------CCHhHHHHHhhccCcCCC--CCeEEEEeCcc--hHHHHHHH
Q 004567 378 FNKAVDWVVQVDCP---------EDVASYIHRVGRTARYNS--GGRSVLFLTPT--EMKMLEKL 428 (744)
Q Consensus 378 i~p~V~~VI~~d~P---------~s~~~yiQRiGRagR~g~--~G~~il~l~~~--e~~~l~~l 428 (744)
. | .++||+-... -.+-+|.|++|||||.|- .|.++++.... +..-+..+
T Consensus 672 M-P-ARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~l 733 (1248)
T KOG0947|consen 672 M-P-ARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRL 733 (1248)
T ss_pred C-C-ceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhH
Confidence 9 8 6777775543 267899999999999986 58888777654 23444544
No 96
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.93 E-value=2e-24 Score=263.44 Aligned_cols=307 Identities=17% Similarity=0.238 Sum_probs=199.8
Q ss_pred CCCcHHHHHHHHHHHc----C-CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHh
Q 004567 87 VKMTDIQRASLPHSLC----G-RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAV 161 (744)
Q Consensus 87 ~~~t~iQ~~aip~il~----g-~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~ 161 (744)
..++++|.+||..+.. | +.+|++++||||||+++ +.++..+++.. ...++|||+|+++|+.|+.+.|..+
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~ta-i~li~~L~~~~----~~~rVLfLvDR~~L~~Qa~~~F~~~ 486 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTA-IALMYRLLKAK----RFRRILFLVDRSALGEQAEDAFKDT 486 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHH-HHHHHHHHhcC----ccCeEEEEecHHHHHHHHHHHHHhc
Confidence 3589999999987652 3 67999999999999874 44555565542 2468999999999999999999887
Q ss_pred hccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcC----CCCCCCCceEEEEcCchhhhc---------c
Q 004567 162 GKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDET----PNFDCSQLQILILDEADRILD---------V 228 (744)
Q Consensus 162 ~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~----~~~~~~~l~~lVlDEAh~lld---------~ 228 (744)
+.........+++ ..... .........|+|||++.|...+... ..+.+..+++||+||||+... .
T Consensus 487 ~~~~~~~~~~i~~-i~~L~-~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~ 564 (1123)
T PRK11448 487 KIEGDQTFASIYD-IKGLE-DKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGEL 564 (1123)
T ss_pred ccccccchhhhhc-hhhhh-hhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchh
Confidence 5322211111111 11111 1111235799999999997765322 124567889999999998531 0
Q ss_pred ------chHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCcccc-----cccccccc--Cccccce-------
Q 004567 229 ------GFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLS-----VHEESVTA--TPNRLQQ------- 288 (744)
Q Consensus 229 ------gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~-----v~~~~~~~--~~~~l~q------- 288 (744)
.+...+..++.++. ...|+||||+...... ++..|.+.. |...-... .|..+..
T Consensus 565 ~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~----~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi 638 (1123)
T PRK11448 565 QFRDQLDYVSKYRRVLDYFD--AVKIGLTATPALHTTE----IFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGI 638 (1123)
T ss_pred ccchhhhHHHHHHHHHhhcC--ccEEEEecCCccchhH----HhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccc
Confidence 12466777887763 5689999998643221 112222110 00000000 0000000
Q ss_pred ----------------eE--EEcCh---------------hhHH----HHHHHHHHHhCCCcEEEEecchHHHHHHHHHH
Q 004567 289 ----------------TA--MIVPL---------------EQKL----DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAF 331 (744)
Q Consensus 289 ----------------~~--~~~~~---------------~~kl----~~L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L 331 (744)
.+ ...+. +... ..+...+.....+++||||.++.+|+.+++.|
T Consensus 639 ~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L 718 (1123)
T PRK11448 639 HFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLL 718 (1123)
T ss_pred cccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHH
Confidence 00 00000 0001 11222222223479999999999999999887
Q ss_pred HhhC----CCC---cEEEeeCCCCHHHHHHHHHHHhc-cC-CeEEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhh
Q 004567 332 KKLR----PGI---PLMCLYGRMKQDRRMAIYAQFCE-KR-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVG 402 (744)
Q Consensus 332 ~~l~----~g~---~v~~lhg~~~~~~R~~i~~~F~~-~~-~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiG 402 (744)
...+ ++. .+..+||+.+ .+..+++.|++ .. .|+|+++++++|+|+ |.|.+||++.++.|...|+||+|
T Consensus 719 ~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~Dv-P~v~~vVf~rpvkS~~lf~QmIG 795 (1123)
T PRK11448 719 KEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDV-PSICNLVFLRRVRSRILYEQMLG 795 (1123)
T ss_pred HHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCc-ccccEEEEecCCCCHHHHHHHHh
Confidence 7642 333 4667999885 46789999998 44 699999999999999 99999999999999999999999
Q ss_pred ccCcCCC
Q 004567 403 RTARYNS 409 (744)
Q Consensus 403 RagR~g~ 409 (744)
|+.|...
T Consensus 796 RgtR~~~ 802 (1123)
T PRK11448 796 RATRLCP 802 (1123)
T ss_pred hhccCCc
Confidence 9999755
No 97
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.93 E-value=1.1e-24 Score=255.35 Aligned_cols=309 Identities=21% Similarity=0.309 Sum_probs=219.6
Q ss_pred cHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCceE
Q 004567 90 TDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSA 169 (744)
Q Consensus 90 t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~ 169 (744)
+....+.+..+..++-++++|+||||||.. +|.+ ++...| ..+..+.+.=|.| ||. ..+..++...++..+
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTq--lP~~--lle~g~--~~~g~I~~tQPRR-lAA--rsvA~RvAeel~~~~ 122 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQ--LPQF--LLEEGL--GIAGKIGCTQPRR-LAA--RSVAERVAEELGEKL 122 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHH--HHHH--HHhhhc--ccCCeEEecCchH-HHH--HHHHHHHHHHhCCCc
Confidence 344455556666677799999999999997 4443 333333 1223344445666 543 344455555555555
Q ss_pred EEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCch-hhhccchHHHH-HHHHHhCCCCCcE
Q 004567 170 GLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEAD-RILDVGFKKAL-NAIVSQLPKHRQT 247 (744)
Q Consensus 170 ~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh-~lld~gf~~~l-~~Il~~lp~~~q~ 247 (744)
|-.+| +.+.++.....+..|-++|.|.|++.+..++. ++.+++||||||| |-++.+|.-.+ ..++...+..-.+
T Consensus 123 G~~VG--Y~iRfe~~~s~~Trik~mTdGiLlrei~~D~~--Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKi 198 (845)
T COG1643 123 GETVG--YSIRFESKVSPRTRIKVMTDGILLREIQNDPL--LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKL 198 (845)
T ss_pred Cceee--EEEEeeccCCCCceeEEeccHHHHHHHhhCcc--cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceE
Confidence 55555 55666777777899999999999999988755 4899999999999 66666665444 3446677767899
Q ss_pred EEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcC-hhh-HHHHHHHHHHH---hCCCcEEEEecchH
Q 004567 248 FLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP-LEQ-KLDMLWSFIKA---HLNSKILVFLTSCK 322 (744)
Q Consensus 248 ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~-~~~-kl~~L~~lLk~---~~~~k~IVF~~s~~ 322 (744)
|+||||+... .+.. ++.+..++.+.... -.++.+|.... ... -...+...+.. ...+.+|||++...
T Consensus 199 IimSATld~~--rfs~-~f~~apvi~i~GR~-----fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~ 270 (845)
T COG1643 199 IIMSATLDAE--RFSA-YFGNAPVIEIEGRT-----YPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQR 270 (845)
T ss_pred EEEecccCHH--HHHH-HcCCCCEEEecCCc-----cceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHH
Confidence 9999998743 4444 44544444443322 22334442222 222 23334444443 34789999999999
Q ss_pred HHHHHHHHHHh--hCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCcEEEEcCC---------
Q 004567 323 QVKYVFEAFKK--LRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDC--------- 390 (744)
Q Consensus 323 ~v~~l~~~L~~--l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~--------- 390 (744)
+.+..++.|.. +.+.+.++.+||.|+..++..+++.-.. ...|++||+|++.+|.| |+|.+||.-+.
T Consensus 271 EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI-~gIr~VIDsG~ak~~~y~~~ 349 (845)
T COG1643 271 EIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTI-PGIRYVIDSGLAKEKRYDPR 349 (845)
T ss_pred HHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceee-CCeEEEecCCcccccccccc
Confidence 99999999997 3246889999999999999998777666 45699999999999999 99999998655
Q ss_pred ---------CCCHhHHHHHhhccCcCCCCCeEEEEeCcch
Q 004567 391 ---------PEDVASYIHRVGRTARYNSGGRSVLFLTPTE 421 (744)
Q Consensus 391 ---------P~s~~~yiQRiGRagR~g~~G~~il~l~~~e 421 (744)
|.|-++..||.|||||. .+|.|+-+++..+
T Consensus 350 ~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~ 388 (845)
T COG1643 350 TGLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEED 388 (845)
T ss_pred cCceeeeEEEechhhhhhhccccccC-CCceEEEecCHHH
Confidence 45789999999999998 5799999988643
No 98
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.92 E-value=2.1e-24 Score=210.98 Aligned_cols=165 Identities=34% Similarity=0.545 Sum_probs=138.9
Q ss_pred cHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCceE
Q 004567 90 TDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSA 169 (744)
Q Consensus 90 t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~ 169 (744)
||+|.++++.+.+|+++++.||||+|||++|++|++..+... ....+||++|+++|+.|++..+..++...++.+
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-----~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~ 75 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-----KDARVLIIVPTRALAEQQFERLRKFFSNTNVRV 75 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-----SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-----CCceEEEEeeccccccccccccccccccccccc
Confidence 799999999999999999999999999999999999988653 224899999999999999999999998878888
Q ss_pred EEEEcCccChHHHHHh-cCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHhCCC--CCc
Q 004567 170 GLLIGGRRDVDMEKEH-VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPK--HRQ 246 (744)
Q Consensus 170 ~~l~Gg~~~~~~e~~~-~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~--~~q 246 (744)
..++|+.......... ..+++|+|+||++|.+.+..... ++.++++|||||+|.+...++...+..++..+.. ..|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~-~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~ 154 (169)
T PF00270_consen 76 VLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI-NISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQ 154 (169)
T ss_dssp EEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS-TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSE
T ss_pred ccccccccccccccccccccccccccCcchhhcccccccc-ccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCc
Confidence 8898844322233333 35799999999999999987533 6677999999999999998888899999888733 589
Q ss_pred EEEEeeccChhHHH
Q 004567 247 TFLFSATQTKSVQD 260 (744)
Q Consensus 247 ~ll~SAT~~~~v~~ 260 (744)
++++|||++..++.
T Consensus 155 ~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 155 IILLSATLPSNVEK 168 (169)
T ss_dssp EEEEESSSTHHHHH
T ss_pred EEEEeeCCChhHhh
Confidence 99999999976654
No 99
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.92 E-value=6.9e-23 Score=211.39 Aligned_cols=313 Identities=21% Similarity=0.227 Sum_probs=229.3
Q ss_pred CCcHHHHHHHHHHHc----CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhc
Q 004567 88 KMTDIQRASLPHSLC----GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGK 163 (744)
Q Consensus 88 ~~t~iQ~~aip~il~----g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~ 163 (744)
++|+.|+.+-..+++ .++.|+.|.||+|||-. +.+.++..++ .|.++.|.+|....+.+++..++....
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~------~G~~vciASPRvDVclEl~~Rlk~aF~ 169 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALN------QGGRVCIASPRVDVCLELYPRLKQAFS 169 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHh------cCCeEEEecCcccchHHHHHHHHHhhc
Confidence 699999988776664 58999999999999985 5666666554 478899999999999999999987654
Q ss_pred cCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHhCCC
Q 004567 164 HHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPK 243 (744)
Q Consensus 164 ~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~ 243 (744)
+..+.+++|++.+.- ...++|||..+|++.- ..++++||||+|...-..-...-.+.-.....
T Consensus 170 --~~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk--------~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~ 232 (441)
T COG4098 170 --NCDIDLLYGDSDSYF-------RAPLVVATTHQLLRFK--------QAFDLLIIDEVDAFPFSDDQSLQYAVKKARKK 232 (441)
T ss_pred --cCCeeeEecCCchhc-------cccEEEEehHHHHHHH--------hhccEEEEeccccccccCCHHHHHHHHHhhcc
Confidence 467778998443321 2689999999998754 35688999999965422212222233344455
Q ss_pred CCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhHH------HHHHHHHHHhC--CCcEE
Q 004567 244 HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKL------DMLWSFIKAHL--NSKIL 315 (744)
Q Consensus 244 ~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl------~~L~~lLk~~~--~~k~I 315 (744)
..-+|++|||+++.+..-+...-..+.. .+...+..|-.+..+....+...++ ..|..+|+.+. +.+++
T Consensus 233 ~g~~IylTATp~k~l~r~~~~g~~~~~k---lp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~l 309 (441)
T COG4098 233 EGATIYLTATPTKKLERKILKGNLRILK---LPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVL 309 (441)
T ss_pred cCceEEEecCChHHHHHHhhhCCeeEee---cchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEE
Confidence 6779999999998765544332111111 1122233344444555555555544 25777887654 58999
Q ss_pred EEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCcEEEEcCCC--C
Q 004567 316 VFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCP--E 392 (744)
Q Consensus 316 VF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~P--~ 392 (744)
||+++....+.++..|+..+|...+.+.|+.- ..|.+.++.|++ ...+||+|.+++||+.| |+|+.+|.-.-- .
T Consensus 310 iF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTf-p~vdV~Vlgaeh~vf 386 (441)
T COG4098 310 IFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTF-PNVDVFVLGAEHRVF 386 (441)
T ss_pred EEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhccccc-ccceEEEecCCcccc
Confidence 99999999999999998878888888999863 578899999999 99999999999999999 999987764433 5
Q ss_pred CHhHHHHHhhccCcCCC--CCeEEEEeCcchHHHHHHHHH
Q 004567 393 DVASYIHRVGRTARYNS--GGRSVLFLTPTEMKMLEKLRE 430 (744)
Q Consensus 393 s~~~yiQRiGRagR~g~--~G~~il~l~~~e~~~l~~l~~ 430 (744)
+-+..+|.+||+||.-. .|..+.|-......|....++
T Consensus 387 TesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A~ke 426 (441)
T COG4098 387 TESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQARKE 426 (441)
T ss_pred cHHHHHHHhhhccCCCcCCCCcEEEEeccchHHHHHHHHH
Confidence 78899999999999743 688777777666677665543
No 100
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=1.4e-23 Score=244.23 Aligned_cols=323 Identities=19% Similarity=0.215 Sum_probs=225.2
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhc
Q 004567 84 AGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGK 163 (744)
Q Consensus 84 ~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~ 163 (744)
.|. .|+++|.-.--.+..| -|+.++||+|||++|.+|++.+.+ .|.+|.||+|+++||.|.++.+..+..
T Consensus 79 lgm-~~ydVQliGgl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al-------~g~~VhIvT~ndyLA~RD~e~m~~l~~ 148 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLDSN--RIAEMRTGEGKTLTATLPAYLNAL-------TGKGVHVITVNDYLARRDAENNRPLFE 148 (908)
T ss_pred hCC-CcCchHHhcchHhcCC--ccccccCCCCchHHHHHHHHHHHh-------cCCCEEEEeCCHHHHHHHHHHHHHHHH
Confidence 454 7888887665445444 589999999999999999987653 466799999999999999999999999
Q ss_pred cCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHH-HHHHhcCCCCCC-----CCceEEEEcCchhhhcc-c-------
Q 004567 164 HHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRL-LQHMDETPNFDC-----SQLQILILDEADRILDV-G------- 229 (744)
Q Consensus 164 ~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrL-l~~l~~~~~~~~-----~~l~~lVlDEAh~lld~-g------- 229 (744)
.++++++++++ +.+. .+....-.++|++|||++| +++|..+-.+.. +.+.++||||||.++-. .
T Consensus 149 ~lGlsv~~i~~-~~~~-~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIIS 226 (908)
T PRK13107 149 FLGLTVGINVA-GLGQ-QEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIIS 226 (908)
T ss_pred hcCCeEEEecC-CCCH-HHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeec
Confidence 99999999988 4433 3333344799999999999 888876633333 77899999999976521 1
Q ss_pred --------hHHHHHHHHHhCCC-------------------CCcEEEEeec--------c--------------------
Q 004567 230 --------FKKALNAIVSQLPK-------------------HRQTFLFSAT--------Q-------------------- 254 (744)
Q Consensus 230 --------f~~~l~~Il~~lp~-------------------~~q~ll~SAT--------~-------------------- 254 (744)
+...+..++..+.. ..+.+.++-. +
T Consensus 227 g~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~ 306 (908)
T PRK13107 227 GAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISL 306 (908)
T ss_pred CCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHH
Confidence 22333333333211 1122222210 0
Q ss_pred ChhHHHHH---HHhcCCCccccc-------cc-----------------------------c------------------
Q 004567 255 TKSVQDLA---RLSLKDPQYLSV-------HE-----------------------------E------------------ 277 (744)
Q Consensus 255 ~~~v~~la---~~~l~~p~~i~v-------~~-----------------------------~------------------ 277 (744)
...+.... .++.++-.|+.. +. .
T Consensus 307 ~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~k 386 (908)
T PRK13107 307 LHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEK 386 (908)
T ss_pred HHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhH
Confidence 00000000 012223333311 00 0
Q ss_pred ---------------------ccccCcccc------ceeEEEcChhhHHHHHHHHHHH--hCCCcEEEEecchHHHHHHH
Q 004567 278 ---------------------SVTATPNRL------QQTAMIVPLEQKLDMLWSFIKA--HLNSKILVFLTSCKQVKYVF 328 (744)
Q Consensus 278 ---------------------~~~~~~~~l------~q~~~~~~~~~kl~~L~~lLk~--~~~~k~IVF~~s~~~v~~l~ 328 (744)
.+...|.+. ..-.+......|..++..-+.. ..+.++||||+|+..++.++
T Consensus 387 L~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls 466 (908)
T PRK13107 387 LAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLA 466 (908)
T ss_pred hhcccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHH
Confidence 000001000 0011223345677777666653 23789999999999999999
Q ss_pred HHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhccCCeEEEccccccccccCC----------------------------
Q 004567 329 EAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFNK---------------------------- 380 (744)
Q Consensus 329 ~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~~~~VLVaTdv~arGlDi~p---------------------------- 380 (744)
..|... +++...||+++.+.++..+.+.|+.+. |+|||++++||+|| .
T Consensus 467 ~~L~~~--gi~~~vLnak~~~~Ea~ii~~Ag~~G~-VtIATnmAGRGTDI-kLggn~~~~~~~~~~~~~~~~~~~~~~~~ 542 (908)
T PRK13107 467 RLMVKE--KIPHEVLNAKFHEREAEIVAQAGRTGA-VTIATNMAGRGTDI-VLGGNWNMEIEALENPTAEQKAKIKADWQ 542 (908)
T ss_pred HHHHHC--CCCeEeccCcccHHHHHHHHhCCCCCc-EEEecCCcCCCcce-ecCCchHHhhhhhcchhhHHHHHHHHHHH
Confidence 999986 999999999999999999999998733 99999999999999 4
Q ss_pred ---------CCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchH
Q 004567 381 ---------AVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 422 (744)
Q Consensus 381 ---------~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~ 422 (744)
+==+||-...+.|..---|-.||+||-|.+|.+..|++-.+.
T Consensus 543 ~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 543 IRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred hhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 123789999999999999999999999999999999987655
No 101
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.92 E-value=2.1e-24 Score=247.06 Aligned_cols=342 Identities=21% Similarity=0.219 Sum_probs=243.3
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHH--HHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChH
Q 004567 72 PISKKTKSGLKDAGFVKMTDIQRASL--PHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRE 149 (744)
Q Consensus 72 ~ls~~~~~~L~~~gf~~~t~iQ~~ai--p~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~Ptre 149 (744)
+++....-.....|...++.||.+|+ |.++.++|.|..+||+.|||++.-+-++..++.. +..++.+.|...
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~------rr~~llilp~vs 280 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR------RRNVLLILPYVS 280 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH------hhceeEecceee
Confidence 44444455566789999999999998 6788899999999999999999999998877654 456899999999
Q ss_pred HHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHH---HHhcCCCCCCCCceEEEEcCchhhh
Q 004567 150 LADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQ---HMDETPNFDCSQLQILILDEADRIL 226 (744)
Q Consensus 150 La~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~---~l~~~~~~~~~~l~~lVlDEAh~ll 226 (744)
.+..-...+..++...|+.+....|...+. .......+.|||-++-.- .+.... .+..+.+||+||.|.+.
T Consensus 281 iv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~----~~~k~~sv~i~tiEkanslin~lie~g--~~~~~g~vvVdElhmi~ 354 (1008)
T KOG0950|consen 281 IVQEKISALSPFSIDLGFPVEEYAGRFPPE----KRRKRESVAIATIEKANSLINSLIEQG--RLDFLGMVVVDELHMIG 354 (1008)
T ss_pred hhHHHHhhhhhhccccCCcchhhcccCCCC----CcccceeeeeeehHhhHhHHHHHHhcC--CccccCcEEEeeeeeee
Confidence 998888888889888899888877632222 233456899999998433 232222 24788999999999999
Q ss_pred ccchHHHHHHHHHhC-----CCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcCh---hhH
Q 004567 227 DVGFKKALNAIVSQL-----PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPL---EQK 298 (744)
Q Consensus 227 d~gf~~~l~~Il~~l-----p~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~---~~k 298 (744)
+.+.+..+..++..+ ....|+|+||||+++.- +...++....|..- ..|..+..+..+.+. ..+
T Consensus 355 d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~--lL~~~L~A~~y~t~------fRPv~L~E~ik~G~~i~~~~r 426 (1008)
T KOG0950|consen 355 DKGRGAILELLLAKILYENLETSVQIIGMSATIPNNS--LLQDWLDAFVYTTR------FRPVPLKEYIKPGSLIYESSR 426 (1008)
T ss_pred ccccchHHHHHHHHHHHhccccceeEeeeecccCChH--HHHHHhhhhheecc------cCcccchhccCCCcccccchh
Confidence 999888888876543 33467999999998752 22222222222210 001111111000000 001
Q ss_pred HH-------------------HHHHHHHHh--CCCcEEEEecchHHHHHHHHHHHhhCC---------------------
Q 004567 299 LD-------------------MLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRP--------------------- 336 (744)
Q Consensus 299 l~-------------------~L~~lLk~~--~~~k~IVF~~s~~~v~~l~~~L~~l~~--------------------- 336 (744)
.. .+..+.... .+.++||||++++.|+.++..+....|
T Consensus 427 ~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~l 506 (1008)
T KOG0950|consen 427 NKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLL 506 (1008)
T ss_pred hHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHh
Confidence 11 122222111 145699999999999888765544211
Q ss_pred ---------------CCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCcEEEEcCC----CCCHhH
Q 004567 337 ---------------GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDC----PEDVAS 396 (744)
Q Consensus 337 ---------------g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~----P~s~~~ 396 (744)
...+.++|++++.++|..+...|+. ...|++||+.++.|+|+ |+.+.+|-.-. +.+.-+
T Consensus 507 r~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNL-PArRVIiraP~~g~~~l~~~~ 585 (1008)
T KOG0950|consen 507 RRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNL-PARRVIIRAPYVGREFLTRLE 585 (1008)
T ss_pred hcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcC-CcceeEEeCCccccchhhhhh
Confidence 2348899999999999999999999 88999999999999999 86666654322 347789
Q ss_pred HHHHhhccCcCCC--CCeEEEEeCcchHHHHHHHHHcCCC
Q 004567 397 YIHRVGRTARYNS--GGRSVLFLTPTEMKMLEKLREAKIP 434 (744)
Q Consensus 397 yiQRiGRagR~g~--~G~~il~l~~~e~~~l~~l~~~~i~ 434 (744)
|.||+|||||+|- .|.+++++.+.+...+..+....++
T Consensus 586 YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~~~ 625 (1008)
T KOG0950|consen 586 YKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSPLK 625 (1008)
T ss_pred HHhhhhhhhhcccccCcceEEEeeccchhHHHHHHhcccc
Confidence 9999999999986 5999999999998777777666443
No 102
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.92 E-value=1.1e-24 Score=241.88 Aligned_cols=308 Identities=21% Similarity=0.218 Sum_probs=232.4
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCc
Q 004567 88 KMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNF 167 (744)
Q Consensus 88 ~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~ 167 (744)
++-|.|..||.-+-.+..||+.|.|.+|||.++-.++...|. .+.++|+.+|-++|.+|-|+.|..-++
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr-------~kQRVIYTSPIKALSNQKYREl~~EF~---- 197 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLR-------EKQRVIYTSPIKALSNQKYRELLEEFK---- 197 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHH-------hcCeEEeeChhhhhcchhHHHHHHHhc----
Confidence 789999999999999999999999999999998888888773 457899999999999999998876443
Q ss_pred eEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcE
Q 004567 168 SAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQT 247 (744)
Q Consensus 168 ~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ 247 (744)
.+|+.+|+.+ .......+|+|.+.|...+.++... ++.+.+||+||+|.|-|...+-.+..-+-.+|.+.+.
T Consensus 198 DVGLMTGDVT-------InP~ASCLVMTTEILRsMLYRGSEv-mrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~ 269 (1041)
T KOG0948|consen 198 DVGLMTGDVT-------INPDASCLVMTTEILRSMLYRGSEV-MREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRF 269 (1041)
T ss_pred ccceeeccee-------eCCCCceeeeHHHHHHHHHhccchH-hheeeeEEeeeehhccccccceeeeeeEEeccccceE
Confidence 4667777321 2235678999999998888777443 6889999999999999988888888888889999999
Q ss_pred EEEeeccChhHHHHHHHhc--CCCccccccccccccCccccceeE---------EEcChhh-----H-------------
Q 004567 248 FLFSATQTKSVQDLARLSL--KDPQYLSVHEESVTATPNRLQQTA---------MIVPLEQ-----K------------- 298 (744)
Q Consensus 248 ll~SAT~~~~v~~la~~~l--~~p~~i~v~~~~~~~~~~~l~q~~---------~~~~~~~-----k------------- 298 (744)
+++|||+|+.....-|..- ..|-.+.. .+ ..|..++++. .+++... .
T Consensus 270 VFLSATiPNA~qFAeWI~~ihkQPcHVVY--Td--yRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~ 345 (1041)
T KOG0948|consen 270 VFLSATIPNARQFAEWICHIHKQPCHVVY--TD--YRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGE 345 (1041)
T ss_pred EEEeccCCCHHHHHHHHHHHhcCCceEEe--ec--CCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCC
Confidence 9999999998765444322 22322211 11 2233444442 2222211 1
Q ss_pred -------------------------HHHHHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhC------------------
Q 004567 299 -------------------------LDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLR------------------ 335 (744)
Q Consensus 299 -------------------------l~~L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~------------------ 335 (744)
+..+...+-.....++|||+-|++.|+.++-.+.++.
T Consensus 346 ~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi 425 (1041)
T KOG0948|consen 346 SDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAI 425 (1041)
T ss_pred CccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHH
Confidence 1122233333335689999999999998887665541
Q ss_pred ----------C---------CCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCcEEEEcCCC----
Q 004567 336 ----------P---------GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCP---- 391 (744)
Q Consensus 336 ----------~---------g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~P---- 391 (744)
| .-.+..+|||+-+--+..+.-.|.. -..+||||-+.+.|||. | ...||+....
T Consensus 426 ~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNM-P-AkTVvFT~~rKfDG 503 (1041)
T KOG0948|consen 426 DQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNM-P-AKTVVFTAVRKFDG 503 (1041)
T ss_pred HhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCC-c-ceeEEEeeccccCC
Confidence 1 1126779999999999999999999 67999999999999999 8 6777775542
Q ss_pred -----CCHhHHHHHhhccCcCCC--CCeEEEEeCcc
Q 004567 392 -----EDVASYIHRVGRTARYNS--GGRSVLFLTPT 420 (744)
Q Consensus 392 -----~s~~~yiQRiGRagR~g~--~G~~il~l~~~ 420 (744)
.+.-.|||+.|||||.|. .|.+|++++..
T Consensus 504 ~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 504 KKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred cceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 155689999999999997 48888888654
No 103
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.92 E-value=1.9e-23 Score=232.64 Aligned_cols=308 Identities=21% Similarity=0.298 Sum_probs=216.0
Q ss_pred HHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCceEE
Q 004567 91 DIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAG 170 (744)
Q Consensus 91 ~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~ 170 (744)
.+-.+.+..+.+++-+|+.|+||||||.. +|- .|+...|... |. +.+.-|.|--|.- +.++++...+...|
T Consensus 54 ~~r~~il~~ve~nqvlIviGeTGsGKSTQ--ipQ--yL~eaG~~~~-g~-I~~TQPRRVAavs---lA~RVAeE~~~~lG 124 (674)
T KOG0922|consen 54 KYRDQILYAVEDNQVLIVIGETGSGKSTQ--IPQ--YLAEAGFASS-GK-IACTQPRRVAAVS---LAKRVAEEMGCQLG 124 (674)
T ss_pred HHHHHHHHHHHHCCEEEEEcCCCCCcccc--HhH--HHHhcccccC-Cc-EEeecCchHHHHH---HHHHHHHHhCCCcC
Confidence 33445556666677899999999999997 443 3666666543 33 5666677766654 44444444444444
Q ss_pred EEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCch-hhhccch-HHHHHHHHHhCCCCCcEE
Q 004567 171 LLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEAD-RILDVGF-KKALNAIVSQLPKHRQTF 248 (744)
Q Consensus 171 ~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh-~lld~gf-~~~l~~Il~~lp~~~q~l 248 (744)
..+| +.+.++........|.+.|.|.|++.+..++.+ +.+++||||||| |-+..+. .-.+..|+... +.-.+|
T Consensus 125 ~~VG--Y~IRFed~ts~~TrikymTDG~LLRE~l~Dp~L--skYsvIIlDEAHERsl~TDiLlGlLKki~~~R-~~LklI 199 (674)
T KOG0922|consen 125 EEVG--YTIRFEDSTSKDTRIKYMTDGMLLREILKDPLL--SKYSVIILDEAHERSLHTDILLGLLKKILKKR-PDLKLI 199 (674)
T ss_pred ceee--eEEEecccCCCceeEEEecchHHHHHHhcCCcc--ccccEEEEechhhhhhHHHHHHHHHHHHHhcC-CCceEE
Confidence 4444 455566666778999999999999999988766 899999999999 3333221 12233333333 346799
Q ss_pred EEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhHH----HHHHHHHHHhCCCcEEEEecchHHH
Q 004567 249 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKL----DMLWSFIKAHLNSKILVFLTSCKQV 324 (744)
Q Consensus 249 l~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl----~~L~~lLk~~~~~k~IVF~~s~~~v 324 (744)
++|||+... ....++.+...+.+.... -.+...|...+..+-+ ..++.+......+-+|||.+..+++
T Consensus 200 imSATlda~---kfS~yF~~a~i~~i~GR~-----fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEI 271 (674)
T KOG0922|consen 200 IMSATLDAE---KFSEYFNNAPILTIPGRT-----FPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEI 271 (674)
T ss_pred EEeeeecHH---HHHHHhcCCceEeecCCC-----CceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHH
Confidence 999998733 333444543344332211 2234445444444333 3333444445578999999999999
Q ss_pred HHHHHHHHhhCCCC------cEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCcEEEEcCC-------
Q 004567 325 KYVFEAFKKLRPGI------PLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDC------- 390 (744)
Q Consensus 325 ~~l~~~L~~l~~g~------~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~------- 390 (744)
+.+++.|.+..... -++.+||.|+.+++..++..-.. ...|+|||++++..|.| |+|.+||.-+.
T Consensus 272 e~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI-~GI~YVVDsG~vK~~~y~ 350 (674)
T KOG0922|consen 272 EAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTI-DGIRYVVDSGFVKQKKYN 350 (674)
T ss_pred HHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEe-cceEEEEcCCceEEEeec
Confidence 99999998863222 26789999999999999887776 78999999999999999 99999998655
Q ss_pred -----------CCCHhHHHHHhhccCcCCCCCeEEEEeCcchH
Q 004567 391 -----------PEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 422 (744)
Q Consensus 391 -----------P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~ 422 (744)
|.|.++-.||.|||||. .+|.|+-+++.++.
T Consensus 351 p~~g~~~L~v~~ISkasA~QRaGRAGRt-~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 351 PRTGLDSLIVVPISKASANQRAGRAGRT-GPGKCYRLYTESAY 392 (674)
T ss_pred cccCccceeEEechHHHHhhhcccCCCC-CCceEEEeeeHHHH
Confidence 56889999999999998 46999999987654
No 104
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.91 E-value=8.4e-23 Score=242.91 Aligned_cols=332 Identities=20% Similarity=0.231 Sum_probs=217.5
Q ss_pred CcHHHHHHHHHHHcC---C-CEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhcc
Q 004567 89 MTDIQRASLPHSLCG---R-DILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKH 164 (744)
Q Consensus 89 ~t~iQ~~aip~il~g---~-dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~ 164 (744)
.++.|..++..++.. . .+++.||||+|||.+.+++++..+.... ....+++++.|++.++.+++..++.++..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~---~~~~r~i~vlP~~t~ie~~~~r~~~~~~~ 272 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKI---KLKSRVIYVLPFRTIIEDMYRRAKEIFGL 272 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccc---cccceEEEEccHHHHHHHHHHHHHhhhcc
Confidence 489999999888864 4 6889999999999999999988875531 25678999999999999999999987655
Q ss_pred CCceEEEEEcCccCh-HHHHH-------------hcCCCcEEEEChHHHHHHHhcCCCCC-CC--CceEEEEcCchhhhc
Q 004567 165 HNFSAGLLIGGRRDV-DMEKE-------------HVNELNILVCTPGRLLQHMDETPNFD-CS--QLQILILDEADRILD 227 (744)
Q Consensus 165 ~~~~~~~l~Gg~~~~-~~e~~-------------~~~~~~IlV~TPgrLl~~l~~~~~~~-~~--~l~~lVlDEAh~lld 227 (744)
.+......+|..... ..... ...-..++++||-..+-.......+. +. ..+++||||+|.+.+
T Consensus 273 ~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~ 352 (733)
T COG1203 273 FSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYAD 352 (733)
T ss_pred cccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcc
Confidence 443332223311110 00000 00124566666665544222222221 11 236899999998887
Q ss_pred cchHHHHHHHHHhC-CCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCc-cccceeEEEcChhhHH-HHHHH
Q 004567 228 VGFKKALNAIVSQL-PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATP-NRLQQTAMIVPLEQKL-DMLWS 304 (744)
Q Consensus 228 ~gf~~~l~~Il~~l-p~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~-~~l~q~~~~~~~~~kl-~~L~~ 304 (744)
......+..++..+ .....+|++|||+|..........+.....+........... ..+.+... ....... ..+..
T Consensus 353 ~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~ 431 (733)
T COG1203 353 ETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKER-VDVEDGPQEELIE 431 (733)
T ss_pred cchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccc-hhhhhhhhHhhhh
Confidence 63333333433333 235789999999999998877766665554443321000000 00111100 1111110 01111
Q ss_pred HH--HHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHh----c-cCCeEEEccccccccc
Q 004567 305 FI--KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFC----E-KRSVLFCTDVASRGLD 377 (744)
Q Consensus 305 lL--k~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~----~-~~~VLVaTdv~arGlD 377 (744)
.+ ....+.+++|.|||+..|..+|..|+...+ +++.+||+++..+|.+.++.+. . ...|+|||++++.|||
T Consensus 432 ~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~--~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvD 509 (733)
T COG1203 432 LISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP--KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVD 509 (733)
T ss_pred cchhhhccCCcEEEEEecHHHHHHHHHHHHhcCC--CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEec
Confidence 11 122378999999999999999999998644 7999999999999998888654 3 6789999999999999
Q ss_pred cCCCCcEEEEcCCCCCHhHHHHHhhccCcCC--CCCeEEEEeCcchHHHHHHHHH
Q 004567 378 FNKAVDWVVQVDCPEDVASYIHRVGRTARYN--SGGRSVLFLTPTEMKMLEKLRE 430 (744)
Q Consensus 378 i~p~V~~VI~~d~P~s~~~yiQRiGRagR~g--~~G~~il~l~~~e~~~l~~l~~ 430 (744)
+ +++++|-= +..+++.+||+||++|.| ..|..+++..........+...
T Consensus 510 i--dfd~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~ 560 (733)
T COG1203 510 I--DFDVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYE 560 (733)
T ss_pred c--ccCeeeec--CCCHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhh
Confidence 9 37777653 445899999999999999 5677777766555544444433
No 105
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.90 E-value=5.8e-22 Score=237.96 Aligned_cols=326 Identities=18% Similarity=0.231 Sum_probs=217.7
Q ss_pred CCcHHHHHHHHHHH----cCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhc
Q 004567 88 KMTDIQRASLPHSL----CGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGK 163 (744)
Q Consensus 88 ~~t~iQ~~aip~il----~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~ 163 (744)
+|++||..++.+++ .|.+.|++..+|.|||+..+ .++..+.... .....+|||||. .|..||...+.+++.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaI-alL~~L~~~~---~~~gp~LIVvP~-SlL~nW~~Ei~kw~p 243 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTI-SLLGYLHEYR---GITGPHMVVAPK-STLGNWMNEIRRFCP 243 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHH-HHHHHHHHhc---CCCCCEEEEeCh-HHHHHHHHHHHHHCC
Confidence 69999999999886 47889999999999999754 3444443221 122348999997 556789999999875
Q ss_pred cCCceEEEEEcCccChHHHH---HhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHh
Q 004567 164 HHNFSAGLLIGGRRDVDMEK---EHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ 240 (744)
Q Consensus 164 ~~~~~~~~l~Gg~~~~~~e~---~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~ 240 (744)
.+.+..++|......... .....++|+|+|++.+..... .+.--++.+|||||||+|-+.. ..+...+..
T Consensus 244 --~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~---~L~k~~W~~VIvDEAHrIKN~~--Sklskalr~ 316 (1033)
T PLN03142 244 --VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT---ALKRFSWRYIIIDEAHRIKNEN--SLLSKTMRL 316 (1033)
T ss_pred --CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH---HhccCCCCEEEEcCccccCCHH--HHHHHHHHH
Confidence 356666776322211111 122468999999999876543 2333467899999999987643 344555555
Q ss_pred CCCCCcEEEEeeccC-hhHHHHHH-HhcCCCcccccc----------------------------------cccc-ccCc
Q 004567 241 LPKHRQTFLFSATQT-KSVQDLAR-LSLKDPQYLSVH----------------------------------EESV-TATP 283 (744)
Q Consensus 241 lp~~~q~ll~SAT~~-~~v~~la~-~~l~~p~~i~v~----------------------------------~~~~-~~~~ 283 (744)
+.. ...+++|||+- +.+.++.. +.+-.|.++... ...+ ...|
T Consensus 317 L~a-~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LP 395 (1033)
T PLN03142 317 FST-NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 395 (1033)
T ss_pred hhc-CcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCC
Confidence 543 45688999964 23333221 112222111000 0000 0001
Q ss_pred cccceeEEEcC---------------------------------------------------------------hhhHHH
Q 004567 284 NRLQQTAMIVP---------------------------------------------------------------LEQKLD 300 (744)
Q Consensus 284 ~~l~q~~~~~~---------------------------------------------------------------~~~kl~ 300 (744)
.... ..+.+. ...|+.
T Consensus 396 pK~e-~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~ 474 (1033)
T PLN03142 396 PKKE-TILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMV 474 (1033)
T ss_pred Ccee-EEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHH
Confidence 1000 011111 122344
Q ss_pred HHHHHHHHh--CCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-c---CCeEEEcccccc
Q 004567 301 MLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K---RSVLFCTDVASR 374 (744)
Q Consensus 301 ~L~~lLk~~--~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~---~~VLVaTdv~ar 374 (744)
.|..+|... .+.++|||+........+.+.|... ++..+.+||+++..+|..+++.|.. . ..+|++|.+++.
T Consensus 475 lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~--g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGl 552 (1033)
T PLN03142 475 LLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYR--GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGL 552 (1033)
T ss_pred HHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHc--CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEecccccc
Confidence 444444332 2679999999999999999998764 8999999999999999999999976 2 357899999999
Q ss_pred ccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEE--EeCcc--hHHHHHHHHH
Q 004567 375 GLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVL--FLTPT--EMKMLEKLRE 430 (744)
Q Consensus 375 GlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il--~l~~~--e~~~l~~l~~ 430 (744)
|||+ ..+++||+||.||++..+.|++||+.|.|+...+.+ |++.+ |..++.....
T Consensus 553 GINL-t~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~ 611 (1033)
T PLN03142 553 GINL-ATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYK 611 (1033)
T ss_pred CCch-hhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHH
Confidence 9999 899999999999999999999999999999766554 34443 3345554433
No 106
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=6.5e-22 Score=217.81 Aligned_cols=322 Identities=21% Similarity=0.280 Sum_probs=227.5
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhcc
Q 004567 85 GFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKH 164 (744)
Q Consensus 85 gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~ 164 (744)
.....+++-.+.+.++..++-+|+.|.||||||.. +|-. |+...+.. .|..+-+.-|.|--|+-+.. ++...
T Consensus 262 ksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQ--iPQy--L~EaGytk-~gk~IgcTQPRRVAAmSVAa---RVA~E 333 (902)
T KOG0923|consen 262 KSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQ--IPQY--LYEAGYTK-GGKKIGCTQPRRVAAMSVAA---RVAEE 333 (902)
T ss_pred hcCCchhhHHHHHHHHHhCcEEEEEcCCCCCcccc--ccHH--HHhccccc-CCceEeecCcchHHHHHHHH---HHHHH
Confidence 34456667777777888888899999999999997 5543 66555543 34556666788877775543 34444
Q ss_pred CCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCch-hhhccchHHHHHHHHHhCCC
Q 004567 165 HNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEAD-RILDVGFKKALNAIVSQLPK 243 (744)
Q Consensus 165 ~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh-~lld~gf~~~l~~Il~~lp~ 243 (744)
++...|.-+| +++.++.....+.-|-++|.|+|++-+...+ ++..+++||||||| |-+..+..-.+..=+..+.+
T Consensus 334 MgvkLG~eVG--YsIRFEdcTSekTvlKYMTDGmLlREfL~ep--dLasYSViiiDEAHERTL~TDILfgLvKDIar~Rp 409 (902)
T KOG0923|consen 334 MGVKLGHEVG--YSIRFEDCTSEKTVLKYMTDGMLLREFLSEP--DLASYSVIIVDEAHERTLHTDILFGLVKDIARFRP 409 (902)
T ss_pred hCcccccccc--eEEEeccccCcceeeeeecchhHHHHHhccc--cccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCC
Confidence 4444444444 6667787788888999999999999887764 45899999999999 44444333333333344456
Q ss_pred CCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhHHHHHH-HHHHHh---CCCcEEEEec
Q 004567 244 HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLW-SFIKAH---LNSKILVFLT 319 (744)
Q Consensus 244 ~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl~~L~-~lLk~~---~~~k~IVF~~ 319 (744)
.-.+++.|||+... .+.. ++.+..++.+.... -.+..+|...|..+-+++.. .+++-| +.+.+|||..
T Consensus 410 dLKllIsSAT~DAe--kFS~-fFDdapIF~iPGRR-----yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFlt 481 (902)
T KOG0923|consen 410 DLKLLISSATMDAE--KFSA-FFDDAPIFRIPGRR-----YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLT 481 (902)
T ss_pred cceEEeeccccCHH--HHHH-hccCCcEEeccCcc-----cceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEec
Confidence 77899999998743 3333 44443333332221 23455666777666665533 333333 4688999999
Q ss_pred chHHHHHHHHHHHhhC-------CCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCcEEEEcCC-
Q 004567 320 SCKQVKYVFEAFKKLR-------PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDC- 390 (744)
Q Consensus 320 s~~~v~~l~~~L~~l~-------~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~- 390 (744)
...+.+.+.+.|.++. +.+-++.+|+.++.+.+..|++.-.. ...|++||++++..|.| ++|.+||.-+.
T Consensus 482 GQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTI-dgI~yViDpGf~ 560 (902)
T KOG0923|consen 482 GQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTI-DGIKYVIDPGFV 560 (902)
T ss_pred cHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceee-cCeEEEecCccc
Confidence 9998877777666542 34568899999999999999887777 67899999999999999 99999998655
Q ss_pred -----------------CCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHH
Q 004567 391 -----------------PEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLRE 430 (744)
Q Consensus 391 -----------------P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~ 430 (744)
|-|-++-.||+|||||.| +|+|+-+++... |...|+.
T Consensus 561 K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~a--Y~~eLE~ 614 (902)
T KOG0923|consen 561 KQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWA--YEHELEE 614 (902)
T ss_pred cccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhh--hhhhhcc
Confidence 557889999999999996 699999988543 3344443
No 107
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.88 E-value=1.3e-20 Score=218.31 Aligned_cols=321 Identities=20% Similarity=0.259 Sum_probs=219.5
Q ss_pred CCcHHHHHHHHHHHcC----CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhc
Q 004567 88 KMTDIQRASLPHSLCG----RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGK 163 (744)
Q Consensus 88 ~~t~iQ~~aip~il~g----~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~ 163 (744)
.+++-|..++..+... .-.++.|.||||||-+|+-.+-..| ..|.++|||+|-.+|..|+...|+..+.
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L-------~~GkqvLvLVPEI~Ltpq~~~rf~~rFg 270 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVL-------AQGKQVLVLVPEIALTPQLLARFKARFG 270 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHH-------HcCCEEEEEeccccchHHHHHHHHHHhC
Confidence 5788999999998766 5689999999999999988777777 4589999999999999999998887543
Q ss_pred cCCceEEEEEcCccC----hHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhh--c-cc---hHHH
Q 004567 164 HHNFSAGLLIGGRRD----VDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRIL--D-VG---FKKA 233 (744)
Q Consensus 164 ~~~~~~~~l~Gg~~~----~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~ll--d-~g---f~~~ 233 (744)
..+..++.+-.+ ..+.....+...|+|||=-.+ ...+.+|.+|||||-|--. . .+ +...
T Consensus 271 ---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl--------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARd 339 (730)
T COG1198 271 ---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL--------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARD 339 (730)
T ss_pred ---CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh--------cCchhhccEEEEeccccccccCCcCCCcCHHH
Confidence 455555543222 233334446799999994333 3457999999999999422 1 11 2344
Q ss_pred HHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhH----HHHHHHHHHHh
Q 004567 234 LNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK----LDMLWSFIKAH 309 (744)
Q Consensus 234 l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~k----l~~L~~lLk~~ 309 (744)
+.....+. .++++|+-|||++-+-...+.. .....+.+........+..+....+....... -..|++.|+.+
T Consensus 340 vA~~Ra~~-~~~pvvLgSATPSLES~~~~~~--g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~ 416 (730)
T COG1198 340 VAVLRAKK-ENAPVVLGSATPSLESYANAES--GKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKT 416 (730)
T ss_pred HHHHHHHH-hCCCEEEecCCCCHHHHHhhhc--CceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHH
Confidence 44444433 5788999999976443333321 11122222211111112222111111111111 13455555443
Q ss_pred C--CCcEEEEecch------------------------------------------------------------HHHHHH
Q 004567 310 L--NSKILVFLTSC------------------------------------------------------------KQVKYV 327 (744)
Q Consensus 310 ~--~~k~IVF~~s~------------------------------------------------------------~~v~~l 327 (744)
. +.++|+|+|.+ ..++.+
T Consensus 417 l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gteri 496 (730)
T COG1198 417 LERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERI 496 (730)
T ss_pred HhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHH
Confidence 3 56677775432 245899
Q ss_pred HHHHHhhCCCCcEEEeeCCCCHHH--HHHHHHHHhc-cCCeEEEccccccccccCCCCcEEEEcCCCC------------
Q 004567 328 FEAFKKLRPGIPLMCLYGRMKQDR--RMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPE------------ 392 (744)
Q Consensus 328 ~~~L~~l~~g~~v~~lhg~~~~~~--R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~P~------------ 392 (744)
.+.|.+++|+.++..+.++.+... -..++..|.+ +.+|||.|.+++.|.|| |+|+.|..+|.-.
T Consensus 497 eeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~f-p~vtLVgvl~aD~~L~~~DfRA~Er 575 (730)
T COG1198 497 EEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDF-PNVTLVGVLDADTGLGSPDFRASER 575 (730)
T ss_pred HHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCc-ccceEEEEEechhhhcCCCcchHHH
Confidence 999999999999999999987543 4678999999 99999999999999999 9999988776532
Q ss_pred CHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHH
Q 004567 393 DVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLRE 430 (744)
Q Consensus 393 s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~ 430 (744)
....+.|-+|||||.+.+|.+++-...-+...++.+..
T Consensus 576 ~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~ 613 (730)
T COG1198 576 TFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKR 613 (730)
T ss_pred HHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHh
Confidence 34678999999999999999999877666555555544
No 108
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.87 E-value=5.2e-20 Score=214.97 Aligned_cols=134 Identities=25% Similarity=0.355 Sum_probs=120.3
Q ss_pred ChhhHHHHHHHHHHHh--CCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEcc
Q 004567 294 PLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD 370 (744)
Q Consensus 294 ~~~~kl~~L~~lLk~~--~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTd 370 (744)
+...++..|+..|+.. .+.++||||+|+..++.+++.|... |+++..+||++++.+|..++..|+. ...|||||+
T Consensus 423 ~~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~--gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~ 500 (655)
T TIGR00631 423 PTDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKEL--GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGIN 500 (655)
T ss_pred eccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhh--ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcC
Confidence 4455677777777654 3678999999999999999999986 8999999999999999999999999 899999999
Q ss_pred ccccccccCCCCcEEEEcC-----CCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHHc
Q 004567 371 VASRGLDFNKAVDWVVQVD-----CPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA 431 (744)
Q Consensus 371 v~arGlDi~p~V~~VI~~d-----~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~~ 431 (744)
++++|+|+ |.+++||++| .|.+..+|+||+|||||. ..|.+++|++..+..+...+.+.
T Consensus 501 ~L~rGfDi-P~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 501 LLREGLDL-PEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred hhcCCeee-CCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 99999999 9999999998 799999999999999998 68999999998888777777664
No 109
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.86 E-value=1.8e-19 Score=218.46 Aligned_cols=332 Identities=21% Similarity=0.321 Sum_probs=206.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHH----HHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCCh
Q 004567 73 ISKKTKSGLKDAGFVKMTDIQRASLP----HSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTR 148 (744)
Q Consensus 73 ls~~~~~~L~~~gf~~~t~iQ~~aip----~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~Ptr 148 (744)
+++.....+...||. +++.|.+.+. .+..|+++++.||||+|||++|++|++.... .+.+++|.+||+
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-------~~~~vvi~t~t~ 302 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-------TEKPVVISTNTK 302 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-------CCCeEEEEeCcH
Confidence 456777788888995 8999998665 5556899999999999999999999987653 356899999999
Q ss_pred HHHHHHHH-HHHHhhccCC--ceEEEEEcCccChH---------------------------------------------
Q 004567 149 ELADQLFD-VLKAVGKHHN--FSAGLLIGGRRDVD--------------------------------------------- 180 (744)
Q Consensus 149 eLa~Qi~~-~l~~~~~~~~--~~~~~l~Gg~~~~~--------------------------------------------- 180 (744)
+|..|+.. .+..+.+..+ +.+.++.|+.....
T Consensus 303 ~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~ 382 (850)
T TIGR01407 303 VLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGN 382 (850)
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcc
Confidence 99999865 5655554433 66666665221100
Q ss_pred --------------------------HHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccc-----
Q 004567 181 --------------------------MEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG----- 229 (744)
Q Consensus 181 --------------------------~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~g----- 229 (744)
........++|||+...-|+..+.....+ +....++||||||++.+..
T Consensus 383 ~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~i-lp~~~~lIiDEAH~L~d~a~~~~~ 461 (850)
T TIGR01407 383 KMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPEL-FPSFRDLIIDEAHHLPDIAENQLQ 461 (850)
T ss_pred hhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhccccc-CCCCCEEEEECcchHHHHHHHHhc
Confidence 00001123589999999888877444222 2455799999999765321
Q ss_pred -------hHHHHH-------------------------------------------------------------H---HH
Q 004567 230 -------FKKALN-------------------------------------------------------------A---IV 238 (744)
Q Consensus 230 -------f~~~l~-------------------------------------------------------------~---Il 238 (744)
+...+. . .+
T Consensus 462 ~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~ 541 (850)
T TIGR01407 462 EELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFD 541 (850)
T ss_pred ceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 000000 0 00
Q ss_pred Hh-----------C-------------------------------------CCCCcEEEEeeccChh--HHHHH-HHhcC
Q 004567 239 SQ-----------L-------------------------------------PKHRQTFLFSATQTKS--VQDLA-RLSLK 267 (744)
Q Consensus 239 ~~-----------l-------------------------------------p~~~q~ll~SAT~~~~--v~~la-~~~l~ 267 (744)
.. + +....+|++|||++.. ...+. .+++.
T Consensus 542 ~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~ 621 (850)
T TIGR01407 542 LALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLT 621 (850)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCC
Confidence 00 0 1124678999999732 22332 33443
Q ss_pred CCccccccccccccCccccceeEEE--cC------hhhHHHHHH----HHHHHhCCCcEEEEecchHHHHHHHHHHHhh-
Q 004567 268 DPQYLSVHEESVTATPNRLQQTAMI--VP------LEQKLDMLW----SFIKAHLNSKILVFLTSCKQVKYVFEAFKKL- 334 (744)
Q Consensus 268 ~p~~i~v~~~~~~~~~~~l~q~~~~--~~------~~~kl~~L~----~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l- 334 (744)
+..+..+. ........+ ...|+. .+ .+.-...+. .++.. ..+++||||+|....+.++..|...
T Consensus 622 ~~~~~~~~-~spf~~~~~-~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~ 698 (850)
T TIGR01407 622 DVHFNTIE-PTPLNYAEN-QRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI-TSPKILVLFTSYEMLHMVYDMLNELP 698 (850)
T ss_pred ccccceec-CCCCCHHHc-CEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhc
Confidence 33322221 111110111 111111 11 112222333 33333 3679999999999999999999752
Q ss_pred -CCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCc--EEEEcCCCCC-----------------
Q 004567 335 -RPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVD--WVVQVDCPED----------------- 393 (744)
Q Consensus 335 -~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~--~VI~~d~P~s----------------- 393 (744)
..+++++. .+.. ..|..+++.|+. +..||+||+.+++|||| |+.. +||....|..
T Consensus 699 ~~~~~~~l~--q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~-~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~ 774 (850)
T TIGR01407 699 EFEGYEVLA--QGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDF-PGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQE 774 (850)
T ss_pred cccCceEEe--cCCC-ccHHHHHHHHHhCCCeEEEEcceeeccccc-CCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHh
Confidence 23444333 3333 578899999998 88999999999999999 8755 5677776531
Q ss_pred -------------HhHHHHHhhccCcCCCCCeEEEEeCcc
Q 004567 394 -------------VASYIHRVGRTARYNSGGRSVLFLTPT 420 (744)
Q Consensus 394 -------------~~~yiQRiGRagR~g~~G~~il~l~~~ 420 (744)
...+.|.+||.-|...+.-+++++++.
T Consensus 775 g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 775 GKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred cCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 134688999999987765556666554
No 110
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=6.5e-21 Score=210.05 Aligned_cols=313 Identities=21% Similarity=0.307 Sum_probs=214.1
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhcc
Q 004567 85 GFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKH 164 (744)
Q Consensus 85 gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~ 164 (744)
.|......+.+.+..+..++-|++.+.||||||.. + -+.||...+... | -+-+.-|.|.-|.- +.+++...
T Consensus 353 q~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQ--l--~QyL~edGY~~~-G-mIGcTQPRRvAAiS---VAkrVa~E 423 (1042)
T KOG0924|consen 353 QYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQ--L--AQYLYEDGYADN-G-MIGCTQPRRVAAIS---VAKRVAEE 423 (1042)
T ss_pred hhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhh--h--HHHHHhcccccC-C-eeeecCchHHHHHH---HHHHHHHH
Confidence 44455566667777777777899999999999997 2 344565544321 2 23344477777764 44455555
Q ss_pred CCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCch-hhhccchHHHHHHHHHhCCC
Q 004567 165 HNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEAD-RILDVGFKKALNAIVSQLPK 243 (744)
Q Consensus 165 ~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh-~lld~gf~~~l~~Il~~lp~ 243 (744)
++...|.-+| +.+.++........|-++|.|.|++-...... +..+++||+|||| |-++.+..-.+...+-.-..
T Consensus 424 M~~~lG~~VG--YsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~--L~kYSviImDEAHERslNtDilfGllk~~larRr 499 (1042)
T KOG0924|consen 424 MGVTLGDTVG--YSIRFEDVTSEDTKIKYMTDGILLRESLKDRD--LDKYSVIIMDEAHERSLNTDILFGLLKKVLARRR 499 (1042)
T ss_pred hCCccccccc--eEEEeeecCCCceeEEEeccchHHHHHhhhhh--hhheeEEEechhhhcccchHHHHHHHHHHHHhhc
Confidence 5555555554 55556666667788999999999987655433 5889999999999 44444433334444444445
Q ss_pred CCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhHHHHHH-HHHHHhC---CCcEEEEec
Q 004567 244 HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLW-SFIKAHL---NSKILVFLT 319 (744)
Q Consensus 244 ~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl~~L~-~lLk~~~---~~k~IVF~~ 319 (744)
+..+|..|||+. ...++..+-.-|.+. +... .-.+...|...+.++-....+ ..+.-|. .+.+|||.+
T Consensus 500 dlKliVtSATm~--a~kf~nfFgn~p~f~-IpGR-----TyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmt 571 (1042)
T KOG0924|consen 500 DLKLIVTSATMD--AQKFSNFFGNCPQFT-IPGR-----TYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMT 571 (1042)
T ss_pred cceEEEeecccc--HHHHHHHhCCCceee-ecCC-----ccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecC
Confidence 778999999986 345555444334332 2211 122344555666655544332 2333333 578999999
Q ss_pred chHHHHHHHHHHHh----h--CC--CCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCcEEEEcCC
Q 004567 320 SCKQVKYVFEAFKK----L--RP--GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDC 390 (744)
Q Consensus 320 s~~~v~~l~~~L~~----l--~~--g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~ 390 (744)
....++-.+..+.. + .+ ++.++.+++.|++.-+..+++.-.. ...|+|||++++..|.| |++.+||..+.
T Consensus 572 GqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi-~gI~yVID~Gy 650 (1042)
T KOG0924|consen 572 GQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTI-PGIRYVIDTGY 650 (1042)
T ss_pred CCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceee-cceEEEEecCc
Confidence 88766655555543 2 13 6789999999999999999877666 77899999999999999 99999998665
Q ss_pred ------------------CCCHhHHHHHhhccCcCCCCCeEEEEeCcc
Q 004567 391 ------------------PEDVASYIHRVGRTARYNSGGRSVLFLTPT 420 (744)
Q Consensus 391 ------------------P~s~~~yiQRiGRagR~g~~G~~il~l~~~ 420 (744)
|.|.+.-.||+|||||.| +|.|+-+++..
T Consensus 651 ~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 651 CKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred eeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 668889999999999985 69999998864
No 111
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.86 E-value=3.4e-20 Score=216.91 Aligned_cols=338 Identities=18% Similarity=0.222 Sum_probs=232.4
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCC
Q 004567 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPT 147 (744)
Q Consensus 68 F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~Pt 147 (744)
+.....++.....+....-...+..+...+..+.+.+.+++.|.||||||....-.+|+..+..+ ....+++--|.
T Consensus 153 ~~~~~~s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~----~~~~IicTQPR 228 (924)
T KOG0920|consen 153 QSEPKKSESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG----AACNIICTQPR 228 (924)
T ss_pred hchhhhhhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC----CCCeEEecCCc
Confidence 33333444444444443333456777888888888889999999999999987777777766653 45567777798
Q ss_pred hHHHHHHHHHHHH-hhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCch-hh
Q 004567 148 RELADQLFDVLKA-VGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEAD-RI 225 (744)
Q Consensus 148 reLa~Qi~~~l~~-~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh-~l 225 (744)
|--|.-+++.+.. .+...+-.+|.-++ .+........+++||.|-|++.+...+. +.++.+||+||+| |=
T Consensus 229 RIsAIsvAeRVa~ER~~~~g~~VGYqvr------l~~~~s~~t~L~fcTtGvLLr~L~~~~~--l~~vthiivDEVHER~ 300 (924)
T KOG0920|consen 229 RISAISVAERVAKERGESLGEEVGYQVR------LESKRSRETRLLFCTTGVLLRRLQSDPT--LSGVTHIIVDEVHERS 300 (924)
T ss_pred hHHHHHHHHHHHHHhccccCCeeeEEEe------eecccCCceeEEEecHHHHHHHhccCcc--cccCceeeeeeEEEcc
Confidence 8888776665433 34444444444443 3444445688999999999999987544 4899999999999 55
Q ss_pred hccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccc--------------cCcccccee--
Q 004567 226 LDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVT--------------ATPNRLQQT-- 289 (744)
Q Consensus 226 ld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~--------------~~~~~l~q~-- 289 (744)
.+.+|.-.+.+.+-...+.-++||||||+.. .+...++.....+.+...... .......+.
T Consensus 301 i~~DflLi~lk~lL~~~p~LkvILMSAT~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~ 377 (924)
T KOG0920|consen 301 INTDFLLILLKDLLPRNPDLKVILMSATLDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSG 377 (924)
T ss_pred CCcccHHHHHHHHhhhCCCceEEEeeeecch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccc
Confidence 5666666666655555678899999999873 344444544444433221100 000000000
Q ss_pred ----------EEEcChhhHHHHHHHHHHH----hCCCcEEEEecchHHHHHHHHHHHhhC---C--CCcEEEeeCCCCHH
Q 004567 290 ----------AMIVPLEQKLDMLWSFIKA----HLNSKILVFLTSCKQVKYVFEAFKKLR---P--GIPLMCLYGRMKQD 350 (744)
Q Consensus 290 ----------~~~~~~~~kl~~L~~lLk~----~~~~k~IVF~~s~~~v~~l~~~L~~l~---~--g~~v~~lhg~~~~~ 350 (744)
......+...+.+..++.. ...+.+|||.++...+..+++.|.... + .+-+..+|+.|+..
T Consensus 378 ~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~ 457 (924)
T KOG0920|consen 378 PERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSE 457 (924)
T ss_pred cccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChH
Confidence 0000111223333333332 236889999999999999999986521 2 25688999999999
Q ss_pred HHHHHHHHHhc-cCCeEEEccccccccccCCCCcEEEEcCC--------C----------CCHhHHHHHhhccCcCCCCC
Q 004567 351 RRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDC--------P----------EDVASYIHRVGRTARYNSGG 411 (744)
Q Consensus 351 ~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~--------P----------~s~~~yiQRiGRagR~g~~G 411 (744)
++..++..... ...|++||++++.+|.| ++|-+||..+. - .+.+.-.||.|||||. ..|
T Consensus 458 eQ~~VF~~pp~g~RKIIlaTNIAETSITI-dDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G 535 (924)
T KOG0920|consen 458 EQQAVFKRPPKGTRKIILATNIAETSITI-DDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPG 535 (924)
T ss_pred HHHHhcCCCCCCcchhhhhhhhHhhcccc-cCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCC
Confidence 99999888887 68999999999999999 99999997554 1 2567889999999998 789
Q ss_pred eEEEEeCcchH
Q 004567 412 RSVLFLTPTEM 422 (744)
Q Consensus 412 ~~il~l~~~e~ 422 (744)
.|+-+++....
T Consensus 536 ~cy~L~~~~~~ 546 (924)
T KOG0920|consen 536 ICYHLYTRSRY 546 (924)
T ss_pred eeEEeechhhh
Confidence 99999987644
No 112
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=3.4e-20 Score=216.80 Aligned_cols=126 Identities=21% Similarity=0.212 Sum_probs=112.1
Q ss_pred cChhhHHHHHHHHHHHh--CCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEc
Q 004567 293 VPLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT 369 (744)
Q Consensus 293 ~~~~~kl~~L~~lLk~~--~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaT 369 (744)
.....|...|...+... .+.++||||+|+..++.+...|... +++...||+ .+..|...+..|.. ...|+|||
T Consensus 578 ~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~--gI~h~vLna--kq~~REa~Iia~AG~~g~VtIAT 653 (1025)
T PRK12900 578 KTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAK--RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIAT 653 (1025)
T ss_pred cCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHc--CCCceeecC--CHHHhHHHHHHhcCCCCeEEEec
Confidence 44457889999988654 5789999999999999999999986 899999997 68899999999999 88999999
Q ss_pred cccccccccCC---CCc-----EEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHH
Q 004567 370 DVASRGLDFNK---AVD-----WVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 423 (744)
Q Consensus 370 dv~arGlDi~p---~V~-----~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~ 423 (744)
|+++||+|| + .|. +||++..|.+...|.||+|||||.|.+|.++.|++..+.-
T Consensus 654 NMAGRGtDI-kl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 654 NMAGRGTDI-KLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred cCcCCCCCc-CCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 999999999 7 454 3499999999999999999999999999999999987653
No 113
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=3.6e-20 Score=198.11 Aligned_cols=329 Identities=22% Similarity=0.272 Sum_probs=231.2
Q ss_pred cCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEE
Q 004567 63 VGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSI 142 (744)
Q Consensus 63 ~~~~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aL 142 (744)
...+.|...|.|+...+.|++..-...+..+.+.+..+..++-++++|.||||||.. +|-+..-+... ...++.
T Consensus 22 k~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQ--iPq~~~~~~~~----~~~~v~ 95 (699)
T KOG0925|consen 22 KAINPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQ--IPQFVLEYELS----HLTGVA 95 (699)
T ss_pred hhcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCcccc--CcHHHHHHHHh----hcccee
Confidence 347789999999999999999876667777777778888888899999999999987 55443333221 225567
Q ss_pred EEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCc
Q 004567 143 IISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEA 222 (744)
Q Consensus 143 Il~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEA 222 (744)
+.-|.|--|+++. +++...+.+..|--+| +++.++.....+.-+-+||.|+|++-...++.+ ..+++||+|||
T Consensus 96 CTQprrvaamsva---~RVadEMDv~lG~EVG--ysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l--~~y~viiLDea 168 (699)
T KOG0925|consen 96 CTQPRRVAAMSVA---QRVADEMDVTLGEEVG--YSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLL--GRYGVIILDEA 168 (699)
T ss_pred ecCchHHHHHHHH---HHHHHHhccccchhcc--ccccccccCChhHHHHHhcchHHHHHHhhCccc--ccccEEEechh
Confidence 7778888787654 4455555566555555 555566655555666789999999988877655 88999999999
Q ss_pred h-hhhccc-hHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhHHH
Q 004567 223 D-RILDVG-FKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLD 300 (744)
Q Consensus 223 h-~lld~g-f~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl~ 300 (744)
| |-+..+ ..-.+..++..-| ...++.+|||+... -.+.++.++..+.+.. . .....+|...+..+.++
T Consensus 169 hERtlATDiLmGllk~v~~~rp-dLk~vvmSatl~a~---Kfq~yf~n~Pll~vpg-~-----~PvEi~Yt~e~erDylE 238 (699)
T KOG0925|consen 169 HERTLATDILMGLLKEVVRNRP-DLKLVVMSATLDAE---KFQRYFGNAPLLAVPG-T-----HPVEIFYTPEPERDYLE 238 (699)
T ss_pred hhhhHHHHHHHHHHHHHHhhCC-CceEEEeecccchH---HHHHHhCCCCeeecCC-C-----CceEEEecCCCChhHHH
Confidence 9 333322 2233444455554 78899999997643 3445667776666543 1 22334555555544444
Q ss_pred HH----HHHHHHhCCCcEEEEecchHHHHHHHHHHHhh----C---CCCcEEEeeCCCCHHHHHHHHHHHh----c--cC
Q 004567 301 ML----WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKL----R---PGIPLMCLYGRMKQDRRMAIYAQFC----E--KR 363 (744)
Q Consensus 301 ~L----~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l----~---~g~~v~~lhg~~~~~~R~~i~~~F~----~--~~ 363 (744)
.. +.+-.....+.+|||..+.++.+..++.+... . ....++.+| +.....+++.-. . ..
T Consensus 239 aairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~R 314 (699)
T KOG0925|consen 239 AAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGR 314 (699)
T ss_pred HHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccc
Confidence 32 23333334789999999999888888777642 2 235678888 333334433222 1 56
Q ss_pred CeEEEccccccccccCCCCcEEEEcCC------------------CCCHhHHHHHhhccCcCCCCCeEEEEeCcc
Q 004567 364 SVLFCTDVASRGLDFNKAVDWVVQVDC------------------PEDVASYIHRVGRTARYNSGGRSVLFLTPT 420 (744)
Q Consensus 364 ~VLVaTdv~arGlDi~p~V~~VI~~d~------------------P~s~~~yiQRiGRagR~g~~G~~il~l~~~ 420 (744)
.|+|+|++++..+.+ ++|.+||..+. |.|..+-.||.||+||. ++|+|+-+++..
T Consensus 315 kvVvstniaetslti-dgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 315 KVVVSTNIAETSLTI-DGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred eEEEEecchheeeee-ccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 899999999999999 99999998665 67889999999999997 789999998764
No 114
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.84 E-value=1.1e-18 Score=201.33 Aligned_cols=280 Identities=21% Similarity=0.261 Sum_probs=195.8
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhc
Q 004567 84 AGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGK 163 (744)
Q Consensus 84 ~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~ 163 (744)
.|| .|+..|+--...++.|+..-+.||||.|||.- .+.+- ..+. ..|.+++||+||..|+.|.++.+.+++.
T Consensus 79 ~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTf-g~~~s-l~~a-----~kgkr~yii~PT~~Lv~Q~~~kl~~~~e 150 (1187)
T COG1110 79 TGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTF-GLLMS-LYLA-----KKGKRVYIIVPTTTLVRQVYERLKKFAE 150 (1187)
T ss_pred hCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHH-HHHHH-HHHH-----hcCCeEEEEecCHHHHHHHHHHHHHHHh
Confidence 466 99999999999999999999999999999983 33322 2222 3578999999999999999999999987
Q ss_pred cCC-ceEEEEEcCccChHH-----HHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccc--------
Q 004567 164 HHN-FSAGLLIGGRRDVDM-----EKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG-------- 229 (744)
Q Consensus 164 ~~~-~~~~~l~Gg~~~~~~-----e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~g-------- 229 (744)
..+ +.+.+++.+.-+.+. +....++.+|+|+|.+-|...+..-.. -++++|++|.+|.++-.+
T Consensus 151 ~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~---~kFdfifVDDVDA~LkaskNvDriL~ 227 (1187)
T COG1110 151 DAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK---LKFDFIFVDDVDAILKASKNVDRLLR 227 (1187)
T ss_pred hcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc---cCCCEEEEccHHHHHhccccHHHHHH
Confidence 665 444443332222221 222335799999999888777765432 367899999999766443
Q ss_pred ---hHHH-------HHHHHHhC------------------------CCCCcEEEEeeccChhHH--HHHHHhcCCCcccc
Q 004567 230 ---FKKA-------LNAIVSQL------------------------PKHRQTFLFSATQTKSVQ--DLARLSLKDPQYLS 273 (744)
Q Consensus 230 ---f~~~-------l~~Il~~l------------------------p~~~q~ll~SAT~~~~v~--~la~~~l~~p~~i~ 273 (744)
|... +..+...+ .+..+++..|||..+.-. .+.+..+.- .
T Consensus 228 LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgF----e 303 (1187)
T COG1110 228 LLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGF----E 303 (1187)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCC----c
Confidence 2221 11111111 123578999999765432 233333221 1
Q ss_pred ccccccccCccccceeEEEcChhhHHHHHHHHHHHhCCCcEEEEecc---hHHHHHHHHHHHhhCCCCcEEEeeCCCCHH
Q 004567 274 VHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTS---CKQVKYVFEAFKKLRPGIPLMCLYGRMKQD 350 (744)
Q Consensus 274 v~~~~~~~~~~~l~q~~~~~~~~~kl~~L~~lLk~~~~~k~IVF~~s---~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~ 350 (744)
+ ........++...|+.. .-...+.++++.. +...|||++. +..++.+++.|+.. |+++..+|+.
T Consensus 304 v--G~~~~~LRNIvD~y~~~---~~~e~~~elvk~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~--Gi~a~~~~a~---- 371 (1187)
T COG1110 304 V--GSGGEGLRNIVDIYVES---ESLEKVVELVKKL-GDGGLIFVPIDYGREKAEELAEYLRSH--GINAELIHAE---- 371 (1187)
T ss_pred c--CccchhhhheeeeeccC---ccHHHHHHHHHHh-CCCeEEEEEcHHhHHHHHHHHHHHHhc--CceEEEeecc----
Confidence 1 11122334555555554 3445566666665 6689999999 88999999999986 9999999984
Q ss_pred HHHHHHHHHhc-cCCeEEEc----cccccccccCCCCcEEEEcCCC
Q 004567 351 RRMAIYAQFCE-KRSVLFCT----DVASRGLDFNKAVDWVVQVDCP 391 (744)
Q Consensus 351 ~R~~i~~~F~~-~~~VLVaT----dv~arGlDi~p~V~~VI~~d~P 391 (744)
....++.|.. ..++||.+ .++-||||+|..+.++|++++|
T Consensus 372 -~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 372 -KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred -chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 2678999999 88999885 6799999997789999999998
No 115
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.84 E-value=1.7e-18 Score=203.55 Aligned_cols=130 Identities=23% Similarity=0.322 Sum_probs=112.6
Q ss_pred hhhHHHHHHHHHHHh--CCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccc
Q 004567 295 LEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 371 (744)
Q Consensus 295 ~~~kl~~L~~lLk~~--~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv 371 (744)
...++..|...|... .+.++||||+|...++.+++.|... |+++..+||++++.+|..++..|+. ...|||||++
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~--gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~ 505 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKEL--GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINL 505 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhc--ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCH
Confidence 345566777777653 3678999999999999999999885 8999999999999999999999999 8999999999
Q ss_pred cccccccCCCCcEEEEcCC-----CCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHH
Q 004567 372 ASRGLDFNKAVDWVVQVDC-----PEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 428 (744)
Q Consensus 372 ~arGlDi~p~V~~VI~~d~-----P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l 428 (744)
+++|+|+ |++++||++|. |.+..+|+||+|||||. ..|.+++|++..+..+.+.+
T Consensus 506 L~rGfdl-p~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~ 565 (652)
T PRK05298 506 LREGLDI-PEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAI 565 (652)
T ss_pred HhCCccc-cCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHH
Confidence 9999999 99999999885 78999999999999996 78999999986444433333
No 116
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.83 E-value=1e-18 Score=195.67 Aligned_cols=337 Identities=18% Similarity=0.243 Sum_probs=224.0
Q ss_pred CCcHHHHHHHHHHHc----CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhc
Q 004567 88 KMTDIQRASLPHSLC----GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGK 163 (744)
Q Consensus 88 ~~t~iQ~~aip~il~----g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~ 163 (744)
.|+++|.+.++++.+ |-+.|++..+|-|||+.- |.+|..|...+ ...|+ -|||||...|.+ |...+++|+.
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~--~~~GP-fLVi~P~StL~N-W~~Ef~rf~P 241 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRK--GIPGP-FLVIAPKSTLDN-WMNEFKRFTP 241 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhc--CCCCC-eEEEeeHhhHHH-HHHHHHHhCC
Confidence 699999999988774 778999999999999974 55555554321 12344 699999988875 8899999986
Q ss_pred cCCceEEEEEcCccChHHHHH---hcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHh
Q 004567 164 HHNFSAGLLIGGRRDVDMEKE---HVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ 240 (744)
Q Consensus 164 ~~~~~~~~l~Gg~~~~~~e~~---~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~ 240 (744)
++.+.+++|+......... ..+..+|+|+|++..+.- ...+.--++++|||||||||-+. ...+..+++.
T Consensus 242 --~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d---k~~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~ 314 (971)
T KOG0385|consen 242 --SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD---KSFLKKFNWRYLVIDEAHRIKNE--KSKLSKILRE 314 (971)
T ss_pred --CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh---HHHHhcCCceEEEechhhhhcch--hhHHHHHHHH
Confidence 5788888884322211111 124789999999998653 22344457899999999999876 4556677777
Q ss_pred CCCCCcEEEEeeccC-hhHHHHH-HHhcCCCccccc--------------------------------------------
Q 004567 241 LPKHRQTFLFSATQT-KSVQDLA-RLSLKDPQYLSV-------------------------------------------- 274 (744)
Q Consensus 241 lp~~~q~ll~SAT~~-~~v~~la-~~~l~~p~~i~v-------------------------------------------- 274 (744)
+... ..+|+++|+- +++..|- -+.+--|.++.-
T Consensus 315 f~~~-nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLp 393 (971)
T KOG0385|consen 315 FKTD-NRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLP 393 (971)
T ss_pred hccc-ceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCC
Confidence 7543 4566777742 2222211 111111111110
Q ss_pred -------c-----------------------cccc---------------ccCccccceeE----------EEcChhhHH
Q 004567 275 -------H-----------------------EESV---------------TATPNRLQQTA----------MIVPLEQKL 299 (744)
Q Consensus 275 -------~-----------------------~~~~---------------~~~~~~l~q~~----------~~~~~~~kl 299 (744)
. .... ....+.+.+.+ ..+....|+
T Consensus 394 pKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm 473 (971)
T KOG0385|consen 394 PKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKM 473 (971)
T ss_pred CcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcce
Confidence 0 0000 00000000000 011122344
Q ss_pred HHHHHHHHHh--CCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-c---CCeEEEccccc
Q 004567 300 DMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K---RSVLFCTDVAS 373 (744)
Q Consensus 300 ~~L~~lLk~~--~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~---~~VLVaTdv~a 373 (744)
..|-.+|... .+.++|||.......+-+.+++.- .++..+.+.|.++.++|...++.|.. + .-+|++|.+.+
T Consensus 474 ~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~--R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGG 551 (971)
T KOG0385|consen 474 LVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCML--RGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGG 551 (971)
T ss_pred ehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHh--cCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccc
Confidence 4454454432 378999999888888888777754 49999999999999999999999988 3 45799999999
Q ss_pred cccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEE--EeCcchH--HHHHHHHHcCCCccccccc
Q 004567 374 RGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVL--FLTPTEM--KMLEKLREAKIPIHFTKAN 441 (744)
Q Consensus 374 rGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il--~l~~~e~--~~l~~l~~~~i~i~~~~~~ 441 (744)
-|||+ .+++.||.||.-|++..-.|...||.|.|+...+.+ +++.+.. ..+++-.. ++.+..+-+.
T Consensus 552 LGINL-~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~-KL~Ld~~VIq 621 (971)
T KOG0385|consen 552 LGINL-TAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAA-KLRLDKLVIQ 621 (971)
T ss_pred ccccc-ccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHH-Hhchhhhhhc
Confidence 99999 899999999999999999999999999999765555 4555533 33333322 4444444443
No 117
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.6e-19 Score=202.25 Aligned_cols=300 Identities=23% Similarity=0.314 Sum_probs=191.8
Q ss_pred HHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCC--CCceEE-EEcCChHHHHHHHHH-HHHhhccCCceEEEEEc
Q 004567 99 HSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPE--DGVGSI-IISPTRELADQLFDV-LKAVGKHHNFSAGLLIG 174 (744)
Q Consensus 99 ~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~--~g~~aL-Il~PtreLa~Qi~~~-l~~~~~~~~~~~~~l~G 174 (744)
.|..+--||+||.||||||.. +|-+ ||...+... ..++.| |.-|.|--|.-+... ...++. ++-.++..+.
T Consensus 267 aIn~n~vvIIcGeTGsGKTTQ--vPQF--LYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~~eVsYqIR 341 (1172)
T KOG0926|consen 267 AINENPVVIICGETGSGKTTQ--VPQF--LYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-LGSEVSYQIR 341 (1172)
T ss_pred HhhcCCeEEEecCCCCCcccc--chHH--HHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-CccceeEEEE
Confidence 343444588999999999997 5544 676655432 123334 455777666555543 333433 4444443333
Q ss_pred CccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchh-hhcc----chHHHHHHHHHhCCC------
Q 004567 175 GRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADR-ILDV----GFKKALNAIVSQLPK------ 243 (744)
Q Consensus 175 g~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~-lld~----gf~~~l~~Il~~lp~------ 243 (744)
++........|.++|.|.|+.-|.+. |-+..+++|||||||. -+.. |....+..+...+..
T Consensus 342 ------fd~ti~e~T~IkFMTDGVLLrEi~~D--flL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~k 413 (1172)
T KOG0926|consen 342 ------FDGTIGEDTSIKFMTDGVLLREIEND--FLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIK 413 (1172)
T ss_pred ------eccccCCCceeEEecchHHHHHHHHh--HhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccC
Confidence 33344456899999999999999876 6679999999999993 2211 122222223222222
Q ss_pred CCcEEEEeeccChhHHHHH---HHhcCCCccccccccccccCccccceeEEEcChhhH---HHHHHHHHHHhCCCcEEEE
Q 004567 244 HRQTFLFSATQTKSVQDLA---RLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK---LDMLWSFIKAHLNSKILVF 317 (744)
Q Consensus 244 ~~q~ll~SAT~~~~v~~la---~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~k---l~~L~~lLk~~~~~k~IVF 317 (744)
.-..|+||||+- +.++. +++-.-|..+.|.... .|- ..|+-...+.+.- +.....+-+..+.+.+|||
T Consensus 414 pLKLIIMSATLR--VsDFtenk~LFpi~pPlikVdARQ---fPV-sIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVF 487 (1172)
T KOG0926|consen 414 PLKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDARQ---FPV-SIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVF 487 (1172)
T ss_pred ceeEEEEeeeEE--ecccccCceecCCCCceeeeeccc---Cce-EEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEE
Confidence 346899999975 33443 2222233344443221 111 1112122222211 2223333344558999999
Q ss_pred ecchHHHHHHHHHHHhhCC-------------------------------------------------------------
Q 004567 318 LTSCKQVKYVFEAFKKLRP------------------------------------------------------------- 336 (744)
Q Consensus 318 ~~s~~~v~~l~~~L~~l~~------------------------------------------------------------- 336 (744)
+....++.++++.|++.+|
T Consensus 488 vTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa 567 (1172)
T KOG0926|consen 488 VTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAA 567 (1172)
T ss_pred EeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhh
Confidence 9999999999999988642
Q ss_pred ------------------------------------CCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccC
Q 004567 337 ------------------------------------GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFN 379 (744)
Q Consensus 337 ------------------------------------g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~ 379 (744)
..-|+.|++-++...++.++..-.. ..-|+|||++++..|.|
T Consensus 568 ~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTI- 646 (1172)
T KOG0926|consen 568 FNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTI- 646 (1172)
T ss_pred hhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhccccc-
Confidence 0116778888888888888877766 56799999999999999
Q ss_pred CCCcEEEEcCCC------------------CCHhHHHHHhhccCcCCCCCeEEEEeCc
Q 004567 380 KAVDWVVQVDCP------------------EDVASYIHRVGRTARYNSGGRSVLFLTP 419 (744)
Q Consensus 380 p~V~~VI~~d~P------------------~s~~~yiQRiGRagR~g~~G~~il~l~~ 419 (744)
|+|.+||..+.- .|-++--||+|||||.| +|.|+-+|+.
T Consensus 647 PgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 647 PGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred CCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhh
Confidence 999999986652 14566789999999996 5889888764
No 118
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.81 E-value=1.1e-18 Score=172.86 Aligned_cols=187 Identities=37% Similarity=0.592 Sum_probs=149.9
Q ss_pred HCCCCCCcHHHHHHHHHHHcC-CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHh
Q 004567 83 DAGFVKMTDIQRASLPHSLCG-RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAV 161 (744)
Q Consensus 83 ~~gf~~~t~iQ~~aip~il~g-~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~ 161 (744)
..++.+|+++|.++++.++.+ +.+++.++||||||.+++.+++..+... ....+||++|++.++.|++..+...
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~-----~~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG-----KGKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc-----CCCcEEEEeCCHHHHHHHHHHHHHH
Confidence 457789999999999999998 9999999999999999999998887432 2467999999999999999999988
Q ss_pred hccCCceEEEEEcCccChHHHHHhcCCC-cEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHh
Q 004567 162 GKHHNFSAGLLIGGRRDVDMEKEHVNEL-NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ 240 (744)
Q Consensus 162 ~~~~~~~~~~l~Gg~~~~~~e~~~~~~~-~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~ 240 (744)
+...........++............+. +|+++||+.+.+.+.... .....+.++||||||.+....+...+..++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~ 156 (201)
T smart00487 78 GPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL-LELSNVDLVILDEAHRLLDGGFGDQLEKLLKL 156 (201)
T ss_pred hccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC-cCHhHCCEEEEECHHHHhcCCcHHHHHHHHHh
Confidence 7654434444444233233333333444 999999999999887763 45678899999999999876788899999998
Q ss_pred CCCCCcEEEEeeccChhHHHHHHHhcCCCcccccc
Q 004567 241 LPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVH 275 (744)
Q Consensus 241 lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~ 275 (744)
++...+++++|||+++.....+..++..+..+...
T Consensus 157 ~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 157 LPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred CCccceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 88889999999999999999888888766555443
No 119
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.81 E-value=1.5e-18 Score=197.81 Aligned_cols=298 Identities=17% Similarity=0.243 Sum_probs=199.1
Q ss_pred CCCcHHHHHHHHHHH----cCC-CEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHh
Q 004567 87 VKMTDIQRASLPHSL----CGR-DILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAV 161 (744)
Q Consensus 87 ~~~t~iQ~~aip~il----~g~-dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~ 161 (744)
..++.+|..||..+. +|+ .+|+++.||+|||.+ .+.++.+|++.+| -+++|+|+-++.|+.|.+..+..+
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrT-Aiaii~rL~r~~~----~KRVLFLaDR~~Lv~QA~~af~~~ 238 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRT-AIAIIDRLIKSGW----VKRVLFLADRNALVDQAYGAFEDF 238 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCccee-HHHHHHHHHhcch----hheeeEEechHHHHHHHHHHHHHh
Confidence 368999999997655 454 399999999999997 4777778877754 477999999999999999988887
Q ss_pred hccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcC----CCCCCCCceEEEEcCchhhhccchHHHHHHH
Q 004567 162 GKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDET----PNFDCSQLQILILDEADRILDVGFKKALNAI 237 (744)
Q Consensus 162 ~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~----~~~~~~~l~~lVlDEAh~lld~gf~~~l~~I 237 (744)
... +-.+..+.+. . ....+.|.|+|+.+|...+... ..|....+++||||||||- .......|
T Consensus 239 ~P~-~~~~n~i~~~--~------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg----i~~~~~~I 305 (875)
T COG4096 239 LPF-GTKMNKIEDK--K------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG----IYSEWSSI 305 (875)
T ss_pred CCC-ccceeeeecc--c------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh----HHhhhHHH
Confidence 643 2222233331 1 1126799999999998777554 3455667999999999984 34455577
Q ss_pred HHhCCCCCcEEEEeeccChhHHHHHHHhc-CCCcc------------------cccccc--ccccCcccc----------
Q 004567 238 VSQLPKHRQTFLFSATQTKSVQDLARLSL-KDPQY------------------LSVHEE--SVTATPNRL---------- 286 (744)
Q Consensus 238 l~~lp~~~q~ll~SAT~~~~v~~la~~~l-~~p~~------------------i~v~~~--~~~~~~~~l---------- 286 (744)
+.++..-.| +++||+...+..-.-.++ ..|.+ +.+.-. .....+..+
T Consensus 306 ~dYFdA~~~--gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~ 383 (875)
T COG4096 306 LDYFDAATQ--GLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEA 383 (875)
T ss_pred HHHHHHHHH--hhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccc
Confidence 777643333 338887664332222222 33332 221100 000000000
Q ss_pred ----ceeEEEcChh------hHHH----HHHHHHHH--hC--CCcEEEEecchHHHHHHHHHHHhhCCCCc---EEEeeC
Q 004567 287 ----QQTAMIVPLE------QKLD----MLWSFIKA--HL--NSKILVFLTSCKQVKYVFEAFKKLRPGIP---LMCLYG 345 (744)
Q Consensus 287 ----~q~~~~~~~~------~kl~----~L~~lLk~--~~--~~k~IVF~~s~~~v~~l~~~L~~l~~g~~---v~~lhg 345 (744)
.+.|-..+.+ ...+ .+...+.. .. ..|+||||.+..+|+++...|...+|... +..+.|
T Consensus 384 i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~ 463 (875)
T COG4096 384 IDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITG 463 (875)
T ss_pred cCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEec
Confidence 1111111111 1112 23333333 11 46999999999999999999999887654 667777
Q ss_pred CCCHHHHHHHHHHHhc---cCCeEEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcC
Q 004567 346 RMKQDRRMAIYAQFCE---KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARY 407 (744)
Q Consensus 346 ~~~~~~R~~i~~~F~~---~~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~ 407 (744)
+-.+. ...+..|.. -.+|.++.+++..|+|+ |.|.++|++..-.|...|.|++||+-|.
T Consensus 464 d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDv-pev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 464 DAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDV-PEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred cchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCc-hheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 65444 334555544 56899999999999999 8899999999999999999999999995
No 120
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.80 E-value=7.7e-18 Score=182.98 Aligned_cols=172 Identities=23% Similarity=0.260 Sum_probs=131.1
Q ss_pred CCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhHHHHHHHHHHH--hCCCcEEEEecch
Q 004567 244 HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKA--HLNSKILVFLTSC 321 (744)
Q Consensus 244 ~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl~~L~~lLk~--~~~~k~IVF~~s~ 321 (744)
..|++++|||+.+.-....... -.-..+ .+..-+...+.+-|....++.|++-|+. ..+.++||-+-|.
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~~---vveQiI------RPTGLlDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTK 456 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGGN---VVEQII------RPTGLLDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTK 456 (663)
T ss_pred cCCEEEEECCCChHHHHhccCc---eeEEee------cCCCCCCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehH
Confidence 3699999999876533322110 000011 1111222233344455566777766654 2378999999999
Q ss_pred HHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCcEEEEcCC-----CCCHh
Q 004567 322 KQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDC-----PEDVA 395 (744)
Q Consensus 322 ~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~-----P~s~~ 395 (744)
+.++.+.++|.++ |+++.++|++...-+|.+++...+. ...|||.-+.+-.|||+ |-|.+|..+|. ..|-.
T Consensus 457 kmAEdLT~Yl~e~--gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDi-PEVsLVAIlDADKeGFLRse~ 533 (663)
T COG0556 457 KMAEDLTEYLKEL--GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDL-PEVSLVAILDADKEGFLRSER 533 (663)
T ss_pred HHHHHHHHHHHhc--CceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCC-cceeEEEEeecCccccccccc
Confidence 9999999999997 9999999999999999999999999 89999999999999999 99999999986 45889
Q ss_pred HHHHHhhccCcCCCCCeEEEEeCcchHHHHHHH
Q 004567 396 SYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 428 (744)
Q Consensus 396 ~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l 428 (744)
+.||-+|||+|. -.|.++++...-...|-+.+
T Consensus 534 SLIQtIGRAARN-~~GkvIlYAD~iT~sM~~Ai 565 (663)
T COG0556 534 SLIQTIGRAARN-VNGKVILYADKITDSMQKAI 565 (663)
T ss_pred hHHHHHHHHhhc-cCCeEEEEchhhhHHHHHHH
Confidence 999999999996 67999999876555554444
No 121
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=2.3e-17 Score=188.63 Aligned_cols=323 Identities=19% Similarity=0.237 Sum_probs=216.8
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhc
Q 004567 84 AGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGK 163 (744)
Q Consensus 84 ~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~ 163 (744)
.|. .|+++|.-+.-.++.|+ |+...||+|||++..+|++-.. ..|.++.|++|+--||.|-++.+..+..
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~A-------L~G~~VhvvT~NdyLA~RDae~m~~ly~ 144 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYA-------LQGRRVHVITVNDYLARRDAEWMGPLYE 144 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHH-------HcCCCeEEEcCCHHHHHHHHHHHHHHHH
Confidence 565 89999999998888774 7799999999999999987665 3578899999999999999999999999
Q ss_pred cCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHH-----HHHHhcC-CCCCCCCceEEEEcCchhhh-cc--------
Q 004567 164 HHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRL-----LQHMDET-PNFDCSQLQILILDEADRIL-DV-------- 228 (744)
Q Consensus 164 ~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrL-----l~~l~~~-~~~~~~~l~~lVlDEAh~ll-d~-------- 228 (744)
.++++++++.+ ..+.. +....-.++|++||..-| .+.|... .....+.+.+.|+||+|.++ |.
T Consensus 145 ~LGLsvg~i~~-~~~~~-err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiIS 222 (764)
T PRK12326 145 ALGLTVGWITE-ESTPE-ERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLA 222 (764)
T ss_pred hcCCEEEEECC-CCCHH-HHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeee
Confidence 99999999988 43333 444445799999999774 2333211 12234668899999999654 21
Q ss_pred ------chHHHHHHHHHhCCCC--------CcEEEEeec--------------c-Chh-------HHH-H-HH-HhcCCC
Q 004567 229 ------GFKKALNAIVSQLPKH--------RQTFLFSAT--------------Q-TKS-------VQD-L-AR-LSLKDP 269 (744)
Q Consensus 229 ------gf~~~l~~Il~~lp~~--------~q~ll~SAT--------------~-~~~-------v~~-l-a~-~~l~~p 269 (744)
.....+..++..+... .+.+.++.. . +.. +.. + |. ++.++-
T Consensus 223 g~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~ 302 (764)
T PRK12326 223 GSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDV 302 (764)
T ss_pred CCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCC
Confidence 1333445555555331 112222211 0 000 000 0 11 112222
Q ss_pred ccccc-------cc------------------------------------------------------------------
Q 004567 270 QYLSV-------HE------------------------------------------------------------------ 276 (744)
Q Consensus 270 ~~i~v-------~~------------------------------------------------------------------ 276 (744)
.|+.. +.
T Consensus 303 dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~i 382 (764)
T PRK12326 303 HYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQF 382 (764)
T ss_pred cEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHH
Confidence 22210 00
Q ss_pred --cccccCccccc------eeEEEcChhhHHHHHHHHHHH--hCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCC
Q 004567 277 --ESVTATPNRLQ------QTAMIVPLEQKLDMLWSFIKA--HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGR 346 (744)
Q Consensus 277 --~~~~~~~~~l~------q~~~~~~~~~kl~~L~~lLk~--~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~ 346 (744)
-.+...|.+.. ...+......|..++..-+.. ..+.++||.|.|....+.+...|.+. |++...|++.
T Consensus 383 Y~l~Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~--gI~h~vLNAk 460 (764)
T PRK12326 383 YDLGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAA--GVPAVVLNAK 460 (764)
T ss_pred hCCcEEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhC--CCcceeeccC
Confidence 00001111100 112233345677776665543 24889999999999999999999986 8999999887
Q ss_pred CCHHHHHHHHHHHhccCCeEEEccccccccccCC---------------CCcEEEEcCCCCCHhHHHHHhhccCcCCCCC
Q 004567 347 MKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFNK---------------AVDWVVQVDCPEDVASYIHRVGRTARYNSGG 411 (744)
Q Consensus 347 ~~~~~R~~i~~~F~~~~~VLVaTdv~arGlDi~p---------------~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G 411 (744)
... .-..++..--....|.|||++++||.|| . +==+||....|.|..--.|-.||+||.|.+|
T Consensus 461 ~~~-~EA~IIa~AG~~gaVTIATNMAGRGTDI-kLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpG 538 (764)
T PRK12326 461 NDA-EEARIIAEAGKYGAVTVSTQMAGRGTDI-RLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPG 538 (764)
T ss_pred chH-hHHHHHHhcCCCCcEEEEecCCCCccCe-ecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCC
Confidence 432 2233333322267899999999999998 4 2237999999999999999999999999999
Q ss_pred eEEEEeCcchH
Q 004567 412 RSVLFLTPTEM 422 (744)
Q Consensus 412 ~~il~l~~~e~ 422 (744)
.+..|++-.+.
T Consensus 539 ss~f~lSleDd 549 (764)
T PRK12326 539 SSVFFVSLEDD 549 (764)
T ss_pred ceeEEEEcchh
Confidence 99999987654
No 122
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.79 E-value=1e-17 Score=197.71 Aligned_cols=300 Identities=17% Similarity=0.143 Sum_probs=177.7
Q ss_pred CcHHHHHHHHHHHc----------CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHH
Q 004567 89 MTDIQRASLPHSLC----------GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVL 158 (744)
Q Consensus 89 ~t~iQ~~aip~il~----------g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l 158 (744)
++++|..|+..+.. .+..+++.+||||||++.+..+. .++.. ....++|||+|+.+|..|+.+.|
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~-~l~~~----~~~~~vl~lvdR~~L~~Q~~~~f 313 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAAR-KALEL----LKNPKVFFVVDRRELDYQLMKEF 313 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHH-HHHhh----cCCCeEEEEECcHHHHHHHHHHH
Confidence 78899999977642 24699999999999998654443 33322 34678999999999999999999
Q ss_pred HHhhccCCceEEEEEcCccChHHHHHhc--CCCcEEEEChHHHHHHHhcC-CCCCCCCc-eEEEEcCchhhhccchHHHH
Q 004567 159 KAVGKHHNFSAGLLIGGRRDVDMEKEHV--NELNILVCTPGRLLQHMDET-PNFDCSQL-QILILDEADRILDVGFKKAL 234 (744)
Q Consensus 159 ~~~~~~~~~~~~~l~Gg~~~~~~e~~~~--~~~~IlV~TPgrLl~~l~~~-~~~~~~~l-~~lVlDEAh~lld~gf~~~l 234 (744)
..++... ..+ ..+...-...+ ....|+|+|.+.|...+... ..+....- -+||+||||+.....+...
T Consensus 314 ~~~~~~~------~~~-~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~- 385 (667)
T TIGR00348 314 QSLQKDC------AER-IESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAKN- 385 (667)
T ss_pred HhhCCCC------Ccc-cCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHHH-
Confidence 9886421 111 11121111222 24789999999997644321 11211111 2799999998654333322
Q ss_pred HHHHHhCCCCCcEEEEeeccChhHHH-HHHHh---cCCCccccccccccccCccccceeEEEcC----------------
Q 004567 235 NAIVSQLPKHRQTFLFSATQTKSVQD-LARLS---LKDPQYLSVHEESVTATPNRLQQTAMIVP---------------- 294 (744)
Q Consensus 235 ~~Il~~lp~~~q~ll~SAT~~~~v~~-la~~~---l~~p~~i~v~~~~~~~~~~~l~q~~~~~~---------------- 294 (744)
+...+| +...++||||+-..... ....+ ..++.+.......... .-.+...|....
T Consensus 386 --l~~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~d-G~~~~i~Y~~~~~~~~~~~~~l~~~~~~ 461 (667)
T TIGR00348 386 --LKKALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRD-GLTVKIDYEDRLPEDHLDRKKLDAFFDE 461 (667)
T ss_pred --HHhhCC-CCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhc-CCeeeEEEEecchhhccChHHHHHHHHH
Confidence 224555 46799999998532110 00111 0111110000000000 000000000000
Q ss_pred -----------------------------hhhHHHHHHHHHHHh-------CCCcEEEEecchHHHHHHHHHHHhhCCC-
Q 004567 295 -----------------------------LEQKLDMLWSFIKAH-------LNSKILVFLTSCKQVKYVFEAFKKLRPG- 337 (744)
Q Consensus 295 -----------------------------~~~kl~~L~~lLk~~-------~~~k~IVF~~s~~~v~~l~~~L~~l~~g- 337 (744)
.+..+..+...+..| ...+++|||.++..|..+++.|....+.
T Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~ 541 (667)
T TIGR00348 462 IFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEK 541 (667)
T ss_pred HHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccc
Confidence 000111111112111 1489999999999999999999887554
Q ss_pred --CcEEEeeCCCCHH---------------------HHHHHHHHHhc--cCCeEEEccccccccccCCCCcEEEEcCCCC
Q 004567 338 --IPLMCLYGRMKQD---------------------RRMAIYAQFCE--KRSVLFCTDVASRGLDFNKAVDWVVQVDCPE 392 (744)
Q Consensus 338 --~~v~~lhg~~~~~---------------------~R~~i~~~F~~--~~~VLVaTdv~arGlDi~p~V~~VI~~d~P~ 392 (744)
...+.+++..... ....++.+|+. ...|||+++++..|+|. |.+.+++..- |.
T Consensus 542 ~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDa-P~l~tLyldK-pl 619 (667)
T TIGR00348 542 FEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDA-PILNTLYLDK-PL 619 (667)
T ss_pred cCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCC-CccceEEEec-cc
Confidence 3455666654332 12368889976 67999999999999999 8777666554 54
Q ss_pred CHhHHHHHhhccCcC
Q 004567 393 DVASYIHRVGRTARY 407 (744)
Q Consensus 393 s~~~yiQRiGRagR~ 407 (744)
.-..++|.+||+.|.
T Consensus 620 k~h~LlQai~R~nR~ 634 (667)
T TIGR00348 620 KYHGLLQAIARTNRI 634 (667)
T ss_pred cccHHHHHHHHhccc
Confidence 445789999999994
No 123
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.77 E-value=3.5e-17 Score=184.48 Aligned_cols=313 Identities=17% Similarity=0.212 Sum_probs=210.7
Q ss_pred CCcHHHHHHHHHHHc----CCCEEEEccCCCchhHHhHHHHHHHHHhc-cCCCCCCceEEEEcCChHHHHHHHHHHHHhh
Q 004567 88 KMTDIQRASLPHSLC----GRDILGAAKTGSGKTLAFVIPVLEKLYKE-RWGPEDGVGSIIISPTRELADQLFDVLKAVG 162 (744)
Q Consensus 88 ~~t~iQ~~aip~il~----g~dvlv~a~TGSGKTla~llpil~~L~~~-~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~ 162 (744)
.+.++|+.++.++.. +.--|+.-.+|-|||... +..|..|+.. +.. ..+|||||. .+..||...|..+.
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQi-isFLaaL~~S~k~~----~paLIVCP~-Tii~qW~~E~~~w~ 278 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQI-ISFLAALHHSGKLT----KPALIVCPA-TIIHQWMKEFQTWW 278 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhH-HHHHHHHhhccccc----CceEEEccH-HHHHHHHHHHHHhC
Confidence 579999999988763 456899999999999873 3444444433 221 459999998 57789999999998
Q ss_pred ccCCceEEEEEcCccC---------hHHHH----HhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccc
Q 004567 163 KHHNFSAGLLIGGRRD---------VDMEK----EHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG 229 (744)
Q Consensus 163 ~~~~~~~~~l~Gg~~~---------~~~e~----~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~g 229 (744)
.. +.+..++|.+.. ..... ......+|+|+|+..+.-+ ...+.-..++++|+||.|+|-+..
T Consensus 279 p~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~---~d~l~~~~W~y~ILDEGH~IrNpn 353 (923)
T KOG0387|consen 279 PP--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ---GDDLLGILWDYVILDEGHRIRNPN 353 (923)
T ss_pred cc--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc---CcccccccccEEEecCcccccCCc
Confidence 64 666667764431 11111 1223568999999877321 122334578999999999988764
Q ss_pred hHHHHHHHHHhCCCCCcEEEEeecc-ChhHHHHHHHh-cCCCcc--------------ccccc-----------------
Q 004567 230 FKKALNAIVSQLPKHRQTFLFSATQ-TKSVQDLARLS-LKDPQY--------------LSVHE----------------- 276 (744)
Q Consensus 230 f~~~l~~Il~~lp~~~q~ll~SAT~-~~~v~~la~~~-l~~p~~--------------i~v~~----------------- 276 (744)
..+..-+..++. .+.+.+|+|+ .+.+..|-.++ +..|.. |.+..
T Consensus 354 --s~islackki~T-~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~ 430 (923)
T KOG0387|consen 354 --SKISLACKKIRT-VHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAV 430 (923)
T ss_pred --cHHHHHHHhccc-cceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHH
Confidence 334444555543 4455566663 22333222111 111100 00000
Q ss_pred ---------------------------------------------------------cc------------cccCccccc
Q 004567 277 ---------------------------------------------------------ES------------VTATPNRLQ 287 (744)
Q Consensus 277 ---------------------------------------------------------~~------------~~~~~~~l~ 287 (744)
.. +...|..+.
T Consensus 431 ~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~ 510 (923)
T KOG0387|consen 431 ALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLD 510 (923)
T ss_pred HHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCccccc
Confidence 00 000000000
Q ss_pred ee---------E-EEcChhhHHHHHHHHHHHhC--CCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHH
Q 004567 288 QT---------A-MIVPLEQKLDMLWSFIKAHL--NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAI 355 (744)
Q Consensus 288 q~---------~-~~~~~~~kl~~L~~lLk~~~--~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i 355 (744)
.. | -.+...-|+..+..+++... +.++|+|..++.....+...|.. .+++..+.+.|..+...|..+
T Consensus 511 ~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~-~~~ysylRmDGtT~~~~R~~l 589 (923)
T KOG0387|consen 511 RRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRR-AKGYSYLRMDGTTPAALRQKL 589 (923)
T ss_pred CcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHh-cCCceEEEecCCCccchhhHH
Confidence 00 0 00111236677777776533 67999999999999999988885 369999999999999999999
Q ss_pred HHHHhc---cCCeEEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEE
Q 004567 356 YAQFCE---KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLF 416 (744)
Q Consensus 356 ~~~F~~---~~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~ 416 (744)
+++|.+ -..+|++|.+.+-|+|+ .+++-||.||+-|++.+-.|..-|+.|+|+.-.+++|
T Consensus 590 Vd~Fne~~s~~VFLLTTrvGGLGlNL-TgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 590 VDRFNEDESIFVFLLTTRVGGLGLNL-TGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVY 652 (923)
T ss_pred HHhhcCCCceEEEEEEeccccccccc-ccCceEEEECCCCCCccchHHHHHHHhhcCccceEEE
Confidence 999997 34578999999999999 9999999999999999999999999999997655554
No 124
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=5.4e-17 Score=189.72 Aligned_cols=322 Identities=20% Similarity=0.237 Sum_probs=211.0
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhc
Q 004567 84 AGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGK 163 (744)
Q Consensus 84 ~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~ 163 (744)
.|. .|+++|.-.--.+..| -|+...||+|||+++.+|++-.. ..|.++.|++||.-||.|-++.+..+..
T Consensus 79 lGm-~~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~a-------l~G~~VhvvT~ndyLA~RD~e~m~~l~~ 148 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNA-------LSGKGVHVVTVNDYLARRDANWMRPLYE 148 (913)
T ss_pred hCC-CcchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHH-------HcCCCEEEEeCCHHHHHHHHHHHHHHhc
Confidence 463 7888887665455444 68899999999999999987654 3578899999999999999999999999
Q ss_pred cCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHH-HHHHhcCCCC-----CCCCceEEEEcCchhhh-ccc-------
Q 004567 164 HHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRL-LQHMDETPNF-----DCSQLQILILDEADRIL-DVG------- 229 (744)
Q Consensus 164 ~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrL-l~~l~~~~~~-----~~~~l~~lVlDEAh~ll-d~g------- 229 (744)
.++++++++.+ ..+. .+....-.++|++||..-| ++.|..+-.+ ..+.+.++||||+|.++ |..
T Consensus 149 ~lGl~v~~i~~-~~~~-~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIIS 226 (913)
T PRK13103 149 FLGLSVGIVTP-FQPP-EEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIIS 226 (913)
T ss_pred ccCCEEEEECC-CCCH-HHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeec
Confidence 99999999987 3333 3334444599999999886 3333332111 23788999999999765 221
Q ss_pred --------hHHHHHHHHHhCCC-------------------CCcEEEEeec-------------c----C-----hhHHH
Q 004567 230 --------FKKALNAIVSQLPK-------------------HRQTFLFSAT-------------Q----T-----KSVQD 260 (744)
Q Consensus 230 --------f~~~l~~Il~~lp~-------------------~~q~ll~SAT-------------~----~-----~~v~~ 260 (744)
....+..++..+.. ..+.+.++-. + . ..+..
T Consensus 227 g~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~ 306 (913)
T PRK13103 227 GQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGL 306 (913)
T ss_pred CCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHH
Confidence 22334444443311 0111111110 0 0 00000
Q ss_pred -------H-H-HHhcCCCcccccc-------c------------------------------------------------
Q 004567 261 -------L-A-RLSLKDPQYLSVH-------E------------------------------------------------ 276 (744)
Q Consensus 261 -------l-a-~~~l~~p~~i~v~-------~------------------------------------------------ 276 (744)
+ | .++.++-.|+... .
T Consensus 307 ~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~k 386 (913)
T PRK13103 307 LTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNK 386 (913)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcch
Confidence 0 0 1122233332110 0
Q ss_pred --------------------cccccCcccc------ceeEEEcChhhHHHHHHHHHHHh--CCCcEEEEecchHHHHHHH
Q 004567 277 --------------------ESVTATPNRL------QQTAMIVPLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVF 328 (744)
Q Consensus 277 --------------------~~~~~~~~~l------~q~~~~~~~~~kl~~L~~lLk~~--~~~k~IVF~~s~~~v~~l~ 328 (744)
-.+...|.+- ..-.+......|..++..-+... .+.++||-+.|+...+.+.
T Consensus 387 LsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls 466 (913)
T PRK13103 387 LSGMTGTADTEAFEFRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMS 466 (913)
T ss_pred hccCCCCCHHHHHHHHHHhCCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHH
Confidence 0000011110 11123344556777777666532 4889999999999999999
Q ss_pred HHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCC---------------------------
Q 004567 329 EAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNK--------------------------- 380 (744)
Q Consensus 329 ~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p--------------------------- 380 (744)
..|... +++.-.|.+... .+..-+-.=.. ...|.|||++++||.|| .
T Consensus 467 ~~L~~~--gi~h~VLNAk~~--~~EA~IIa~AG~~GaVTIATNMAGRGTDI-kLg~n~~~~~~~~~~~~~~~~~~~~~~~ 541 (913)
T PRK13103 467 NLLKKE--GIEHKVLNAKYH--EKEAEIIAQAGRPGALTIATNMAGRGTDI-LLGGNWEVEVAALENPTPEQIAQIKADW 541 (913)
T ss_pred HHHHHc--CCcHHHhccccc--hhHHHHHHcCCCCCcEEEeccCCCCCCCE-ecCCchHHHHHhhhhhhHHHHHHHHHHH
Confidence 999986 777777777533 33332222222 67899999999999999 4
Q ss_pred ----------CCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchH
Q 004567 381 ----------AVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 422 (744)
Q Consensus 381 ----------~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~ 422 (744)
+==+||-...|.|..---|-.||+||-|.+|.+-.|++-.+.
T Consensus 542 ~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 542 QKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 223799999999999999999999999999999999987554
No 125
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.75 E-value=4.4e-16 Score=186.95 Aligned_cols=317 Identities=20% Similarity=0.277 Sum_probs=195.7
Q ss_pred HHCCCCCCcHHHHHHHHH----HHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHH-H
Q 004567 82 KDAGFVKMTDIQRASLPH----SLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLF-D 156 (744)
Q Consensus 82 ~~~gf~~~t~iQ~~aip~----il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~-~ 156 (744)
...|| .+++-|.+.... +..+.++++.|+||+|||++|++|++... .+.++||++||++|+.|+. .
T Consensus 240 ~~~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~--------~~~~vvI~t~T~~Lq~Ql~~~ 310 (820)
T PRK07246 240 ALLGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS--------DQRQIIVSVPTKILQDQIMAE 310 (820)
T ss_pred ccCCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc--------CCCcEEEEeCcHHHHHHHHHH
Confidence 33466 799999984433 33467899999999999999999988653 3578999999999999994 6
Q ss_pred HHHHhhccCCceEEEEEcCccChHHH------------------------------------------------------
Q 004567 157 VLKAVGKHHNFSAGLLIGGRRDVDME------------------------------------------------------ 182 (744)
Q Consensus 157 ~l~~~~~~~~~~~~~l~Gg~~~~~~e------------------------------------------------------ 182 (744)
.+..++...++.+.++.|+...+...
T Consensus 311 ~i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~ 390 (820)
T PRK07246 311 EVKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDG 390 (820)
T ss_pred HHHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccC
Confidence 77777777777777666632211000
Q ss_pred -----------------HHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccc-----h-------HH-
Q 004567 183 -----------------KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG-----F-------KK- 232 (744)
Q Consensus 183 -----------------~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~g-----f-------~~- 232 (744)
.......+|||+.-.-|+.++...+. +...+++||||||++.+.. . ..
T Consensus 391 ~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~~--~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~ 468 (820)
T PRK07246 391 NLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDKD--FARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQT 468 (820)
T ss_pred CCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhccC--CCCCCEEEEECcchhHHHHHHHhcceecHHHHHHH
Confidence 00011347999998888877755443 3678999999999765321 0 00
Q ss_pred -------------------------------------------------HHHHH-----------HHh------------
Q 004567 233 -------------------------------------------------ALNAI-----------VSQ------------ 240 (744)
Q Consensus 233 -------------------------------------------------~l~~I-----------l~~------------ 240 (744)
.+..+ +..
T Consensus 469 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~ 548 (820)
T PRK07246 469 IQKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQ 548 (820)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 00000 000
Q ss_pred ---------------------CCCCCcEEEEeeccC--hhHHHHHHHhcCCCccccccccccccCccccceeEEEc---C
Q 004567 241 ---------------------LPKHRQTFLFSATQT--KSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIV---P 294 (744)
Q Consensus 241 ---------------------lp~~~q~ll~SAT~~--~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~---~ 294 (744)
++....+|++|||++ +...-...+++.......+. .+..-++.+++. +
T Consensus 549 ~~~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~------~~~~~~~~~~i~~~~p 622 (820)
T PRK07246 549 SEKRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVSLADLLGFEEYLFHKIE------KDKKQDQLVVVDQDMP 622 (820)
T ss_pred CCcceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCcHHHHcCCCccceecCC------CChHHccEEEeCCCCC
Confidence 011236789999986 22221222343322222111 001111111111 1
Q ss_pred ------hhhHHHHHHHHHHH--hCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCe
Q 004567 295 ------LEQKLDMLWSFIKA--HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSV 365 (744)
Q Consensus 295 ------~~~kl~~L~~lLk~--~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~V 365 (744)
.+.-...+...|.. ..+++++|+|+|....+.+++.|... ..++ ...|... .|..++++|+. ...|
T Consensus 623 ~~~~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~--~~~~-l~Qg~~~--~~~~l~~~F~~~~~~v 697 (820)
T PRK07246 623 LVTETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQW--QVSH-LAQEKNG--TAYNIKKRFDRGEQQI 697 (820)
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhc--CCcE-EEeCCCc--cHHHHHHHHHcCCCeE
Confidence 11222233333311 34789999999999999999999764 4455 3334222 25668999998 7889
Q ss_pred EEEccccccccccCC-CCcEEEEcCCCC----C--------------------------HhHHHHHhhccCcCCCCCeEE
Q 004567 366 LFCTDVASRGLDFNK-AVDWVVQVDCPE----D--------------------------VASYIHRVGRTARYNSGGRSV 414 (744)
Q Consensus 366 LVaTdv~arGlDi~p-~V~~VI~~d~P~----s--------------------------~~~yiQRiGRagR~g~~G~~i 414 (744)
|++|+...+|||+|+ ....||....|. + +..+.|-+||.-|...+--++
T Consensus 698 LlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv 777 (820)
T PRK07246 698 LLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAV 777 (820)
T ss_pred EEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEE
Confidence 999999999999932 355667766652 2 235789999999987654355
Q ss_pred EEeCcc
Q 004567 415 LFLTPT 420 (744)
Q Consensus 415 l~l~~~ 420 (744)
+++++.
T Consensus 778 ~ilD~R 783 (820)
T PRK07246 778 LILDRR 783 (820)
T ss_pred EEECCc
Confidence 555554
No 126
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.75 E-value=3.7e-17 Score=186.81 Aligned_cols=162 Identities=22% Similarity=0.232 Sum_probs=119.3
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCc
Q 004567 88 KMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNF 167 (744)
Q Consensus 88 ~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~ 167 (744)
-|-.||++.+...-.+..++++|||.+|||.+ -...++..++. .+..-+|+++||.+|+.|....+......+.+
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfi-sfY~iEKVLRe----sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~ 585 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFI-SFYAIEKVLRE----SDSDVVIYVAPTKALVNQVSANVYARFDTKTF 585 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceec-cHHHHHHHHhh----cCCCEEEEecchHHHhhhhhHHHHHhhccCcc
Confidence 57889999999998999999999999999985 45566776665 45566999999999999988776654433333
Q ss_pred eEE-EEEcCccChHHHHHhcC--CCcEEEEChHHHHHHHhcC--CCCCCCCceEEEEcCchhhhccchHHHHHHHHHhCC
Q 004567 168 SAG-LLIGGRRDVDMEKEHVN--ELNILVCTPGRLLQHMDET--PNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP 242 (744)
Q Consensus 168 ~~~-~l~Gg~~~~~~e~~~~~--~~~IlV~TPgrLl~~l~~~--~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp 242 (744)
..+ .+.| ... .+ -..+ .|.|+|+-|+-+-..|... ....+..++++|+||+|.+..+.-.-.+..++...|
T Consensus 586 ~rg~sl~g-~lt--qE-Ysinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~ 661 (1330)
T KOG0949|consen 586 LRGVSLLG-DLT--QE-YSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIP 661 (1330)
T ss_pred ccchhhHh-hhh--HH-hcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcC
Confidence 322 2333 111 11 1223 6999999999987777653 233478999999999999987765566666666664
Q ss_pred CCCcEEEEeeccChhHHH
Q 004567 243 KHRQTFLFSATQTKSVQD 260 (744)
Q Consensus 243 ~~~q~ll~SAT~~~~v~~ 260 (744)
+.++.+|||+.+...-
T Consensus 662 --CP~L~LSATigN~~l~ 677 (1330)
T KOG0949|consen 662 --CPFLVLSATIGNPNLF 677 (1330)
T ss_pred --CCeeEEecccCCHHHH
Confidence 8899999998776443
No 127
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=1.1e-15 Score=176.99 Aligned_cols=322 Identities=21% Similarity=0.242 Sum_probs=212.2
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhc
Q 004567 84 AGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGK 163 (744)
Q Consensus 84 ~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~ 163 (744)
.|. .|+++|.-+--.+..| -|....||-||||++.+|+.-.. ..|.+|-||+..--||..=++.+..+..
T Consensus 75 lG~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnA-------L~GkgVhVVTvNdYLA~RDae~mg~vy~ 144 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNA-------LTGKGVIVSTVNEYLAERDAEEMGKVFN 144 (925)
T ss_pred hCC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHH-------hcCCceEEEecchhhhhhhHHHHHHHHH
Confidence 465 8999998887666666 47999999999999999885432 2578899999999999888888888888
Q ss_pred cCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHH-HHHHhcCCC-----CCCCCceEEEEcCchhhh-cc--------
Q 004567 164 HHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRL-LQHMDETPN-----FDCSQLQILILDEADRIL-DV-------- 228 (744)
Q Consensus 164 ~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrL-l~~l~~~~~-----~~~~~l~~lVlDEAh~ll-d~-------- 228 (744)
.+|++++++.. +.+.. +....-.++|++||..-| ++.|+.+-. ...+.+.+.|+||+|.++ |.
T Consensus 145 fLGLsvG~i~~-~~~~~-~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIIS 222 (925)
T PRK12903 145 FLGLSVGINKA-NMDPN-LKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIIS 222 (925)
T ss_pred HhCCceeeeCC-CCChH-HHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCccccc
Confidence 99999998887 33332 333445799999999775 233333211 124678899999999654 21
Q ss_pred -------chHHHHHHHHHhCCCC-------CcEEEEeeccChhHHHH-----------------------HH-HhcCCCc
Q 004567 229 -------GFKKALNAIVSQLPKH-------RQTFLFSATQTKSVQDL-----------------------AR-LSLKDPQ 270 (744)
Q Consensus 229 -------gf~~~l~~Il~~lp~~-------~q~ll~SAT~~~~v~~l-----------------------a~-~~l~~p~ 270 (744)
.++..+..++..+... ...+.++..-...+..+ |. ++..+-.
T Consensus 223 g~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~d 302 (925)
T PRK12903 223 GGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVE 302 (925)
T ss_pred CCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCc
Confidence 1344455555554321 11222221100000000 00 1112222
Q ss_pred cccc-------c--------------------------------------------------------------------
Q 004567 271 YLSV-------H-------------------------------------------------------------------- 275 (744)
Q Consensus 271 ~i~v-------~-------------------------------------------------------------------- 275 (744)
|+.. +
T Consensus 303 YiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY 382 (925)
T PRK12903 303 YIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIY 382 (925)
T ss_pred eEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHh
Confidence 2210 0
Q ss_pred ccccccCccccc------eeEEEcChhhHHHHHHHHHHH-h-CCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCC
Q 004567 276 EESVTATPNRLQ------QTAMIVPLEQKLDMLWSFIKA-H-LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRM 347 (744)
Q Consensus 276 ~~~~~~~~~~l~------q~~~~~~~~~kl~~L~~lLk~-~-~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~ 347 (744)
.-.+...|.+.. .-.+......|..++..-+.. | .+.++||.|.|....+.+...|.+. |++...|++..
T Consensus 383 ~l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~--gi~h~vLNAk~ 460 (925)
T PRK12903 383 NMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEA--NIPHTVLNAKQ 460 (925)
T ss_pred CCCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC--CCCceeecccc
Confidence 000001111111 112333455677777766653 3 4789999999999999999999985 88888888863
Q ss_pred CHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCc--------EEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeC
Q 004567 348 KQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVD--------WVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 418 (744)
Q Consensus 348 ~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~--------~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~ 418 (744)
. .+..-+-.=.. ...|.|||++++||.|| .--. +||....|.|..---|..||+||.|.+|.+..|++
T Consensus 461 ~--e~EA~IIa~AG~~GaVTIATNMAGRGTDI-~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lS 537 (925)
T PRK12903 461 N--AREAEIIAKAGQKGAITIATNMAGRGTDI-KLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFIS 537 (925)
T ss_pred h--hhHHHHHHhCCCCCeEEEecccccCCcCc-cCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEe
Confidence 3 34433333222 67899999999999999 4222 89999999999999999999999999999999988
Q ss_pred cchH
Q 004567 419 PTEM 422 (744)
Q Consensus 419 ~~e~ 422 (744)
-.+.
T Consensus 538 LeD~ 541 (925)
T PRK12903 538 LDDQ 541 (925)
T ss_pred cchH
Confidence 6654
No 128
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.72 E-value=8.4e-17 Score=188.22 Aligned_cols=328 Identities=18% Similarity=0.263 Sum_probs=223.0
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhh
Q 004567 87 VKMTDIQRASLPHSL----CGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162 (744)
Q Consensus 87 ~~~t~iQ~~aip~il----~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~ 162 (744)
.+++.+|.+.+++++ .+.++|++-.+|-|||+.- +..|..|+... ...|+ .|||+|...+.. |...|..+.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqt-i~fl~~l~~~~--~~~gp-flvvvplst~~~-W~~ef~~w~ 443 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQT-ITFLSYLFHSL--QIHGP-FLVVVPLSTITA-WEREFETWT 443 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHH-HHHHHHHHHhh--hccCC-eEEEeehhhhHH-HHHHHHHHh
Confidence 589999999999877 4789999999999999863 33444443321 12344 699999987765 778888877
Q ss_pred ccCCceEEEEEcCccChHHHHHh----cC-----CCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHH
Q 004567 163 KHHNFSAGLLIGGRRDVDMEKEH----VN-----ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKA 233 (744)
Q Consensus 163 ~~~~~~~~~l~Gg~~~~~~e~~~----~~-----~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~ 233 (744)
.+++.+++|+.......... .. .++++++|++.++.- ...+.--.+.++++|||||+-+.. ..
T Consensus 444 ---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD---k~~L~~i~w~~~~vDeahrLkN~~--~~ 515 (1373)
T KOG0384|consen 444 ---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD---KAELSKIPWRYLLVDEAHRLKNDE--SK 515 (1373)
T ss_pred ---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc---HhhhccCCcceeeecHHhhcCchH--HH
Confidence 57788888854332221111 11 479999999998542 223434467899999999988643 33
Q ss_pred HHHHHHhCCCCCcEEEEeecc-ChhHHHHHHH-hcCCCccccccc-----------------------------------
Q 004567 234 LNAIVSQLPKHRQTFLFSATQ-TKSVQDLARL-SLKDPQYLSVHE----------------------------------- 276 (744)
Q Consensus 234 l~~Il~~lp~~~q~ll~SAT~-~~~v~~la~~-~l~~p~~i~v~~----------------------------------- 276 (744)
+...+..+..+ ..+++++|+ .+++..|..+ .+-.|.-+....
T Consensus 516 l~~~l~~f~~~-~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvek 594 (1373)
T KOG0384|consen 516 LYESLNQFKMN-HRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEK 594 (1373)
T ss_pred HHHHHHHhccc-ceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhcc
Confidence 34445555433 456677774 4556555433 222232211100
Q ss_pred -----------------------------------cccccCccc----------cceeEEEcChhhHH----------HH
Q 004567 277 -----------------------------------ESVTATPNR----------LQQTAMIVPLEQKL----------DM 301 (744)
Q Consensus 277 -----------------------------------~~~~~~~~~----------l~q~~~~~~~~~kl----------~~ 301 (744)
.....++.- ..|-|.+-+.+.++ ..
T Consensus 595 slp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~ 674 (1373)
T KOG0384|consen 595 SLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEA 674 (1373)
T ss_pred CCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHH
Confidence 000000000 11223322222211 23
Q ss_pred HHHHHHHh---------------CCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc----c
Q 004567 302 LWSFIKAH---------------LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE----K 362 (744)
Q Consensus 302 L~~lLk~~---------------~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~----~ 362 (744)
|..+|... .+.++|||-..+....-|+++|... +++.-.|.|.+..+-|+..++.|+. .
T Consensus 675 L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r--~ypfQRLDGsvrgelRq~AIDhFnap~Sdd 752 (1373)
T KOG0384|consen 675 LQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLR--GYPFQRLDGSVRGELRQQAIDHFNAPDSDD 752 (1373)
T ss_pred HHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHc--CCcceeccCCcchHHHHHHHHhccCCCCCc
Confidence 44444332 2679999999999999999999875 9999999999999999999999988 4
Q ss_pred CCeEEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCe--EEEEeCcc--hHHHHHHHHHc
Q 004567 363 RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGR--SVLFLTPT--EMKMLEKLREA 431 (744)
Q Consensus 363 ~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~--~il~l~~~--e~~~l~~l~~~ 431 (744)
..+|+||.+.+-|||+ ..++.||.||.-|++..-+|...||.|.|+.-. ++-|++.+ |.+++++-..+
T Consensus 753 FvFLLSTRAGGLGINL-atADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~K 824 (1373)
T KOG0384|consen 753 FVFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLK 824 (1373)
T ss_pred eEEEEecccCcccccc-cccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHH
Confidence 5799999999999999 899999999999999999999999999998654 45566665 44677765554
No 129
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.72 E-value=1.8e-15 Score=174.97 Aligned_cols=314 Identities=16% Similarity=0.200 Sum_probs=203.5
Q ss_pred CCcHHHHHHHHHHHc---C-------CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCC-----ceEEEEcCChHHHH
Q 004567 88 KMTDIQRASLPHSLC---G-------RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDG-----VGSIIISPTRELAD 152 (744)
Q Consensus 88 ~~t~iQ~~aip~il~---g-------~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g-----~~aLIl~PtreLa~ 152 (744)
.|+|+|++.+..+-. | .-+|++-..|+|||+..+ +.+..+++. .++ .++|||+|. .|+.
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~I-sflwtlLrq----~P~~~~~~~k~lVV~P~-sLv~ 311 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCI-SFIWTLLRQ----FPQAKPLINKPLVVAPS-SLVN 311 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHH-HHHHHHHHh----CcCccccccccEEEccH-HHHH
Confidence 589999999976653 2 237888999999999754 444444433 233 668999997 5778
Q ss_pred HHHHHHHHhhccCCceEEEEEcCccC-------hHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhh
Q 004567 153 QLFDVLKAVGKHHNFSAGLLIGGRRD-------VDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRI 225 (744)
Q Consensus 153 Qi~~~l~~~~~~~~~~~~~l~Gg~~~-------~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~l 225 (744)
-|...|.++...+.+....++|.... +-......-...|+|.+++.+.+++.. +....+++||+||.|++
T Consensus 312 nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~---il~~~~glLVcDEGHrl 388 (776)
T KOG0390|consen 312 NWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK---ILLIRPGLLVCDEGHRL 388 (776)
T ss_pred HHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH---HhcCCCCeEEECCCCCc
Confidence 89999999987667777777773332 111111112467889999999877664 34468899999999987
Q ss_pred hccchHHHHHHHHHhCCCCCcEEEEeeccC-hhHHHHH-HHhcCCCcccccc----------------------------
Q 004567 226 LDVGFKKALNAIVSQLPKHRQTFLFSATQT-KSVQDLA-RLSLKDPQYLSVH---------------------------- 275 (744)
Q Consensus 226 ld~gf~~~l~~Il~~lp~~~q~ll~SAT~~-~~v~~la-~~~l~~p~~i~v~---------------------------- 275 (744)
-+.. ..+...+..+. ..+.|++|+|+- +++..+. -+.+.+|.++...
T Consensus 389 kN~~--s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~ 465 (776)
T KOG0390|consen 389 KNSD--SLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREE 465 (776)
T ss_pred cchh--hHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHH
Confidence 6543 33333444443 345677788842 2222211 1112222211100
Q ss_pred ----------------ccc-------------------------------c-----------------------------
Q 004567 276 ----------------EES-------------------------------V----------------------------- 279 (744)
Q Consensus 276 ----------------~~~-------------------------------~----------------------------- 279 (744)
... .
T Consensus 466 rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~ 545 (776)
T KOG0390|consen 466 RLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLL 545 (776)
T ss_pred HHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcc
Confidence 000 0
Q ss_pred ---------c------cCccccceeEEEcChhhHHHHHHHHHHHhCCCcEEE---EecchHHHHHHHHHHHhhCCCCcEE
Q 004567 280 ---------T------ATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILV---FLTSCKQVKYVFEAFKKLRPGIPLM 341 (744)
Q Consensus 280 ---------~------~~~~~l~q~~~~~~~~~kl~~L~~lLk~~~~~k~IV---F~~s~~~v~~l~~~L~~l~~g~~v~ 341 (744)
. ..+..+...........++-.|..++... ..++++ +++...+...+.+.+..+. |+.++
T Consensus 546 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~-~ek~~~~~v~Isny~~tldl~e~~~~~~-g~~~~ 623 (776)
T KOG0390|consen 546 CEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVI-REKLLVKSVLISNYTQTLDLFEQLCRWR-GYEVL 623 (776)
T ss_pred cccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHH-hhhcceEEEEeccHHHHHHHHHHHHhhc-CceEE
Confidence 0 00000000011111123444455554222 334444 4455666666667777765 99999
Q ss_pred EeeCCCCHHHHHHHHHHHhc---c-CCeEEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEE
Q 004567 342 CLYGRMKQDRRMAIYAQFCE---K-RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLF 416 (744)
Q Consensus 342 ~lhg~~~~~~R~~i~~~F~~---~-~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~ 416 (744)
.|||.|+..+|..+++.|.+ . ..+|.+|-+.+.||++ -+.+.||.||..|+++.-.|.++|+-|.|+.-.|+++
T Consensus 624 rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinL-iGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 624 RLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNL-IGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred EEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceee-cccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 99999999999999999998 2 3467778999999999 8999999999999999999999999999998877765
No 130
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.71 E-value=2.4e-16 Score=169.46 Aligned_cols=294 Identities=19% Similarity=0.232 Sum_probs=201.7
Q ss_pred CCcHHHHHHHHHHHcC---CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhcc
Q 004567 88 KMTDIQRASLPHSLCG---RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKH 164 (744)
Q Consensus 88 ~~t~iQ~~aip~il~g---~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~ 164 (744)
.++|+|..++..+..+ +.-|++.|+|+|||++-+-++.. -.+.+||||.+---+.||...+..|+..
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t----------ikK~clvLcts~VSVeQWkqQfk~wsti 371 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT----------IKKSCLVLCTSAVSVEQWKQQFKQWSTI 371 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee----------ecccEEEEecCccCHHHHHHHHHhhccc
Confidence 4899999999988853 67899999999999975444432 2466999999999999999999999865
Q ss_pred CCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCC-------CCCCCCceEEEEcCchhhhccchHHHHHHH
Q 004567 165 HNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETP-------NFDCSQLQILILDEADRILDVGFKKALNAI 237 (744)
Q Consensus 165 ~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~-------~~~~~~l~~lVlDEAh~lld~gf~~~l~~I 237 (744)
.+-.++.++.+.+. ....++.|+|+|+.++..--.+.. .+.-..+.++|+||+|.+...-|+..+.-+
T Consensus 372 ~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv 446 (776)
T KOG1123|consen 372 QDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIV 446 (776)
T ss_pred CccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHH
Confidence 55555555552221 123468899999987643211110 122357899999999999888888888777
Q ss_pred HHhCCCCCcEEEEeeccChhHHHHHHH-hcCCCccccccc-------------c-cc--ccCc---------cccceeEE
Q 004567 238 VSQLPKHRQTFLFSATQTKSVQDLARL-SLKDPQYLSVHE-------------E-SV--TATP---------NRLQQTAM 291 (744)
Q Consensus 238 l~~lp~~~q~ll~SAT~~~~v~~la~~-~l~~p~~i~v~~-------------~-~~--~~~~---------~~l~q~~~ 291 (744)
-.+. .++++||+-.....+..+ ++-.|....... . .+ .-++ ..-.....
T Consensus 447 ~aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lL 521 (776)
T KOG1123|consen 447 QAHC-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLL 521 (776)
T ss_pred HHHh-----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhhee
Confidence 7665 688999976543333222 111222211100 0 00 0000 00011112
Q ss_pred EcChhhHHHHHHHHHHHh--CCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc--cCCeEE
Q 004567 292 IVPLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE--KRSVLF 367 (744)
Q Consensus 292 ~~~~~~kl~~L~~lLk~~--~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~--~~~VLV 367 (744)
.+-.+.|+....-+|+.| .+.++|||..+.-....++-.|.+ ..++|..+|.+|+.|++.|+- ..+.+|
T Consensus 522 yvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-------pfIYG~Tsq~ERm~ILqnFq~n~~vNTIF 594 (776)
T KOG1123|consen 522 YVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-------PFIYGPTSQNERMKILQNFQTNPKVNTIF 594 (776)
T ss_pred eecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-------ceEECCCchhHHHHHHHhcccCCccceEE
Confidence 222334555444444443 388999999887776666555433 358999999999999999988 678999
Q ss_pred EccccccccccCCCCcEEEEcCCC-CCHhHHHHHhhccCcCCC
Q 004567 368 CTDVASRGLDFNKAVDWVVQVDCP-EDVASYIHRVGRTARYNS 409 (744)
Q Consensus 368 aTdv~arGlDi~p~V~~VI~~d~P-~s~~~yiQRiGRagR~g~ 409 (744)
.+-+....+|+ |..+++||.... .|..+-.||.||.-|+.+
T Consensus 595 lSKVgDtSiDL-PEAnvLIQISSH~GSRRQEAQRLGRILRAKk 636 (776)
T KOG1123|consen 595 LSKVGDTSIDL-PEANVLIQISSHGGSRRQEAQRLGRILRAKK 636 (776)
T ss_pred EeeccCccccC-CcccEEEEEcccccchHHHHHHHHHHHHHhh
Confidence 99999999999 999999998875 477899999999999754
No 131
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.70 E-value=3.4e-15 Score=174.07 Aligned_cols=131 Identities=22% Similarity=0.252 Sum_probs=98.7
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhc
Q 004567 84 AGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGK 163 (744)
Q Consensus 84 ~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~ 163 (744)
.|+ .|+++|.-+.-.+ .+.-|+.+.||.|||+++.+|+.-.. ..|.+|-||+++..||.+-++.+..+..
T Consensus 73 lG~-r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~a-------L~G~~VhVvT~NdyLA~RD~e~m~pvy~ 142 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNA-------LTGKGVHIVTVNDYLAKRDQEWMGQIYR 142 (870)
T ss_pred hCC-CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHH-------hcCCceEEEeCCHHHHHHHHHHHHHHHH
Confidence 566 6889997765444 45579999999999999999985332 2578899999999999999999999999
Q ss_pred cCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHH-----HHHHhcC-CCCCCCCceEEEEcCchhhh
Q 004567 164 HHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRL-----LQHMDET-PNFDCSQLQILILDEADRIL 226 (744)
Q Consensus 164 ~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrL-----l~~l~~~-~~~~~~~l~~lVlDEAh~ll 226 (744)
.+|++++++.+ +.+. .+....-.++|++||..-| .+.|... .....+.+.+.|+||+|.++
T Consensus 143 ~LGLsvg~i~~-~~~~-~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 143 FLGLTVGLIQE-GMSS-EERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HcCCceeeeCC-CCCh-HHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 99999999887 4443 3444455689999999654 3333211 11224678899999999654
No 132
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.68 E-value=8.4e-16 Score=166.97 Aligned_cols=383 Identities=13% Similarity=0.081 Sum_probs=245.7
Q ss_pred HHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHH
Q 004567 81 LKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKA 160 (744)
Q Consensus 81 L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~ 160 (744)
++++.-.....+|.++|..+-+|+++++.-.|.+||.++|.+.....+... +....+++.|+.+++......+.-
T Consensus 279 ~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~-----~~s~~~~~~~~~~~~~~~~~~~~V 353 (1034)
T KOG4150|consen 279 LNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC-----HATNSLLPSEMVEHLRNGSKGQVV 353 (1034)
T ss_pred HhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC-----cccceecchhHHHHhhccCCceEE
Confidence 345555678899999999999999999999999999999998887765443 345579999999998643222111
Q ss_pred hhccCC-c-e-EEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcC-CCC--CCCCceEEEEcCchhhhccc---hH
Q 004567 161 VGKHHN-F-S-AGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDET-PNF--DCSQLQILILDEADRILDVG---FK 231 (744)
Q Consensus 161 ~~~~~~-~-~-~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~-~~~--~~~~l~~lVlDEAh~lld~g---f~ 231 (744)
...... . + ++-.+.+............+.+++++.|........-. ..+ .+-.+.+++.||+|.++... -.
T Consensus 354 ~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~ 433 (1034)
T KOG4150|consen 354 HVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQ 433 (1034)
T ss_pred EEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHH
Confidence 100000 0 1 11112212222222233357899999998865443222 111 13345688999999765431 12
Q ss_pred HHHHHHHHhC-----CCCCcEEEEeeccChhHHHHHHHhc-CCCccccccccccccCccccceeEEEcChh---------
Q 004567 232 KALNAIVSQL-----PKHRQTFLFSATQTKSVQDLARLSL-KDPQYLSVHEESVTATPNRLQQTAMIVPLE--------- 296 (744)
Q Consensus 232 ~~l~~Il~~l-----p~~~q~ll~SAT~~~~v~~la~~~l-~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~--------- 296 (744)
..+.++...+ ..+.|++-.|||+...+.....++- ..-..+.++ ..|..-.+.+++.|..
T Consensus 434 ~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~D-----GSPs~~K~~V~WNP~~~P~~~~~~~ 508 (1034)
T KOG4150|consen 434 DQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTID-----GSPSSEKLFVLWNPSAPPTSKSEKS 508 (1034)
T ss_pred HHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEec-----CCCCccceEEEeCCCCCCcchhhhh
Confidence 2333332221 2357899999998877766554432 222222222 2233344444444321
Q ss_pred hHH----HHHHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhC----CC--CcEEEeeCCCCHHHHHHHHHHHhc-cCCe
Q 004567 297 QKL----DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLR----PG--IPLMCLYGRMKQDRRMAIYAQFCE-KRSV 365 (744)
Q Consensus 297 ~kl----~~L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~----~g--~~v~~lhg~~~~~~R~~i~~~F~~-~~~V 365 (744)
.++ ..+.+++.. +-++|.||.+++-|+.+....+..+ |. ..+..+.|+...++|+.+....-. +..-
T Consensus 509 ~~i~E~s~~~~~~i~~--~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~g 586 (1034)
T KOG4150|consen 509 SKVVEVSHLFAEMVQH--GLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCG 586 (1034)
T ss_pred hHHHHHHHHHHHHHHc--CCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeE
Confidence 112 233344443 6799999999999988876666543 21 136778999999999999977666 8889
Q ss_pred EEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEe--CcchHHHHHHHHHc-CCCcccccccc
Q 004567 366 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFL--TPTEMKMLEKLREA-KIPIHFTKANT 442 (744)
Q Consensus 366 LVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l--~~~e~~~l~~l~~~-~i~i~~~~~~~ 442 (744)
+|||++++-|||| .+.+.|++.++|.|.+.++|..|||||.++...++.+. .|-+..|+..-..- +.|-.++.++-
T Consensus 587 iIaTNALELGIDI-G~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~LD~ 665 (1034)
T KOG4150|consen 587 IIATNALELGIDI-GHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEELHLDS 665 (1034)
T ss_pred EEecchhhhcccc-ccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcceeEEec
Confidence 9999999999999 89999999999999999999999999999987766554 45566666554332 55555565555
Q ss_pred cccccHHHHHHHHHhcChhHHHHHHHHHHH-HHHH
Q 004567 443 KRLQPVSGLLAALLVKYPDMQHRAQKAFIT-YLRS 476 (744)
Q Consensus 443 ~~~~~i~~~l~~~~~~~~~l~~~a~~af~s-y~rs 476 (744)
....-+...|+-.+.+-|--.+.-++-|-+ .+|.
T Consensus 666 ~N~~iL~~HlQCAA~ELPIN~~~D~q~Fg~~~lr~ 700 (1034)
T KOG4150|consen 666 QNKHVLMQHLQCAALELPINLQYDQQHFGSGELRN 700 (1034)
T ss_pred ccHHHHHHHHhHHhhcCccccchhhhhcccHHHHh
Confidence 555556666766666655444444444433 4443
No 133
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.68 E-value=3e-14 Score=173.99 Aligned_cols=110 Identities=21% Similarity=0.294 Sum_probs=81.0
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCC--CcEEE
Q 004567 310 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKA--VDWVV 386 (744)
Q Consensus 310 ~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~--V~~VI 386 (744)
.++++||||+|....+.+++.|......-....+.-+++...|..+++.|+. ...||++|.....|||| |+ +.+||
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~-pg~~l~~vi 829 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDI-PGDELSCLV 829 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCcccc-CCCceEEEE
Confidence 3689999999999999999999764221112222223444567899999998 78899999999999999 76 58899
Q ss_pred EcCCCC----C--------------------------HhHHHHHhhccCcCCCCCeEEEEeCcc
Q 004567 387 QVDCPE----D--------------------------VASYIHRVGRTARYNSGGRSVLFLTPT 420 (744)
Q Consensus 387 ~~d~P~----s--------------------------~~~yiQRiGRagR~g~~G~~il~l~~~ 420 (744)
....|. + +..+.|.+||.-|...+--+++++++.
T Consensus 830 I~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 830 IVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred EecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 888764 1 134588899999987654455555554
No 134
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.68 E-value=6.3e-16 Score=144.01 Aligned_cols=118 Identities=36% Similarity=0.603 Sum_probs=109.4
Q ss_pred hhHHHHHHHHHHHhC--CCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEcccc
Q 004567 296 EQKLDMLWSFIKAHL--NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA 372 (744)
Q Consensus 296 ~~kl~~L~~lLk~~~--~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~ 372 (744)
+.|...+..++.... ..++||||++...++.+++.|.. ++.++..+||+++...|..++..|.+ ...+|++|+++
T Consensus 11 ~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~ 88 (131)
T cd00079 11 DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRK--PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHh--cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChh
Confidence 368888888888764 78999999999999999999987 48899999999999999999999999 88999999999
Q ss_pred ccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEE
Q 004567 373 SRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLF 416 (744)
Q Consensus 373 arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~ 416 (744)
++|+|+ |.+++||+++.|++...|+|++||++|.|+.|.+++|
T Consensus 89 ~~G~d~-~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDL-PNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcCh-hhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999 9999999999999999999999999999998887764
No 135
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.67 E-value=1.8e-15 Score=170.62 Aligned_cols=339 Identities=17% Similarity=0.226 Sum_probs=215.7
Q ss_pred CCcHHHHHHHHHHH----cCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhc
Q 004567 88 KMTDIQRASLPHSL----CGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGK 163 (744)
Q Consensus 88 ~~t~iQ~~aip~il----~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~ 163 (744)
++-+||.-.++++. .+-+.|++..+|-|||.. +++.+..|+.... +|+ -|||||...|-+ |.+.|.+||.
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~---~gp-HLVVvPsSTleN-WlrEf~kwCP 472 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGN---PGP-HLVVVPSSTLEN-WLREFAKWCP 472 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCC---CCC-cEEEecchhHHH-HHHHHHHhCC
Confidence 48899999998765 355679999999999987 4666666665432 333 599999988866 8888999997
Q ss_pred cCCceEEEEEcCccChHHHHHhc----CCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccch--HHHHHHH
Q 004567 164 HHNFSAGLLIGGRRDVDMEKEHV----NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGF--KKALNAI 237 (744)
Q Consensus 164 ~~~~~~~~l~Gg~~~~~~e~~~~----~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf--~~~l~~I 237 (744)
.+.+...+|.......-...+ ..++|+|+|+......-.....|.-.++.++|+||+|.+-+++- +..+..|
T Consensus 473 --sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~~LM~I 550 (941)
T KOG0389|consen 473 --SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYKHLMSI 550 (941)
T ss_pred --ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHHHhccc
Confidence 467777888432222222222 26899999996654322222234456789999999997766541 1111111
Q ss_pred --------------------------------------------------------------------------------
Q 004567 238 -------------------------------------------------------------------------------- 237 (744)
Q Consensus 238 -------------------------------------------------------------------------------- 237 (744)
T Consensus 551 ~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K~ 630 (941)
T KOG0389|consen 551 NANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRLKS 630 (941)
T ss_pred cccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence
Q ss_pred --HHhCCCCCc---EEEEeeccChhHHHHHHHh-----------------------------------------------
Q 004567 238 --VSQLPKHRQ---TFLFSATQTKSVQDLARLS----------------------------------------------- 265 (744)
Q Consensus 238 --l~~lp~~~q---~ll~SAT~~~~v~~la~~~----------------------------------------------- 265 (744)
+..||+..| .+.||.++-.--..++..+
T Consensus 631 qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~ 710 (941)
T KOG0389|consen 631 QVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMAKR 710 (941)
T ss_pred HHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHHHH
Confidence 111222221 2233333221111111111
Q ss_pred -cCCCcccccccc----cc--------c---cCccccceeEEEc----ChhhHHHHHHHHHHHhC--CCcEEEEecchHH
Q 004567 266 -LKDPQYLSVHEE----SV--------T---ATPNRLQQTAMIV----PLEQKLDMLWSFIKAHL--NSKILVFLTSCKQ 323 (744)
Q Consensus 266 -l~~p~~i~v~~~----~~--------~---~~~~~l~q~~~~~----~~~~kl~~L~~lLk~~~--~~k~IVF~~s~~~ 323 (744)
+..|.|...... +. + .....+ +.|..- -...|...|-.+|.... +.++|||-.-...
T Consensus 711 il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~-~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqm 789 (941)
T KOG0389|consen 711 ILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHL-SKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQM 789 (941)
T ss_pred HhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCC-cccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHH
Confidence 000000000000 00 0 000000 000000 01134555555554432 5899999988888
Q ss_pred HHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc--c-CCeEEEccccccccccCCCCcEEEEcCCCCCHhHHHHH
Q 004567 324 VKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE--K-RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHR 400 (744)
Q Consensus 324 v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~--~-~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQR 400 (744)
.+-+...|..+ ++..+.|.|...-..|+.+++.|.. . ..+|++|-+.+-|||+ .++++||.+|+..++-.-.|.
T Consensus 790 LDILE~~L~~l--~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINL-t~An~VIihD~dFNP~dD~QA 866 (941)
T KOG0389|consen 790 LDILEVVLDTL--GYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINL-TCANTVIIHDIDFNPYDDKQA 866 (941)
T ss_pred HHHHHHHHHhc--CceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecc-cccceEEEeecCCCCcccchh
Confidence 88888888876 8999999999999999999999988 2 3679999999999999 999999999999999999999
Q ss_pred hhccCcCCCCCeE--EEEeCcchH-HHHHHHHHcCCCcccc
Q 004567 401 VGRTARYNSGGRS--VLFLTPTEM-KMLEKLREAKIPIHFT 438 (744)
Q Consensus 401 iGRagR~g~~G~~--il~l~~~e~-~~l~~l~~~~i~i~~~ 438 (744)
-.|+.|.|+...+ +-+++.+.. +.+.+|.+.++.++..
T Consensus 867 EDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~ 907 (941)
T KOG0389|consen 867 EDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEAD 907 (941)
T ss_pred HHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhh
Confidence 9999999986544 445666654 5667777766655443
No 136
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.67 E-value=8.1e-14 Score=161.08 Aligned_cols=88 Identities=14% Similarity=0.128 Sum_probs=65.2
Q ss_pred HHHHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-----cCCeEEEcccccc
Q 004567 300 DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-----KRSVLFCTDVASR 374 (744)
Q Consensus 300 ~~L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-----~~~VLVaTdv~ar 374 (744)
..+..++... .+.++|.|+|....+.+++.|.... .++++ +.|..+ .|..++++|+. ...|||+|+.+..
T Consensus 460 ~~~~~~~~~~-~G~~lvLfTS~~~~~~~~~~l~~~l-~~~~l-~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfwe 534 (636)
T TIGR03117 460 LSTAAILRKA-QGGTLVLTTAFSHISAIGQLVELGI-PAEIV-IQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWT 534 (636)
T ss_pred HHHHHHHHHc-CCCEEEEechHHHHHHHHHHHHhhc-CCCEE-EeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCcccc
Confidence 3444454443 6799999999999999999997643 24443 445432 45668888886 3689999999999
Q ss_pred cccc---------CCCCcEEEEcCCCC
Q 004567 375 GLDF---------NKAVDWVVQVDCPE 392 (744)
Q Consensus 375 GlDi---------~p~V~~VI~~d~P~ 392 (744)
|||+ ...+++||....|.
T Consensus 535 GvDv~~~~~~p~~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 535 GIDLTHKPVSPDKDNLLTDLIITCAPF 561 (636)
T ss_pred ccccCCccCCCCCCCcccEEEEEeCCC
Confidence 9999 24499999988773
No 137
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.65 E-value=3.5e-14 Score=165.40 Aligned_cols=131 Identities=23% Similarity=0.264 Sum_probs=102.5
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhc
Q 004567 84 AGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGK 163 (744)
Q Consensus 84 ~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~ 163 (744)
.|. .|+++|.-+--.+..| -|+.+.||-||||++.+|+.-.. ..|.+|-||+++..||..-++.+..+..
T Consensus 82 lG~-r~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpaylnA-------L~GkgVhVVTvNdYLA~RDae~m~~vy~ 151 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLNA-------LTGKGVHVVTVNDYLARRDAEWMGQVHR 151 (939)
T ss_pred hCC-CcchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHHh-------hcCCCeEEEeCCHHHHHhHHHHHHHHHH
Confidence 465 7888887766555444 68999999999999999987543 3578899999999999999999999999
Q ss_pred cCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHH-----HHHHhcC-CCCCCCCceEEEEcCchhhh
Q 004567 164 HHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRL-----LQHMDET-PNFDCSQLQILILDEADRIL 226 (744)
Q Consensus 164 ~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrL-----l~~l~~~-~~~~~~~l~~lVlDEAh~ll 226 (744)
.+|++++++.+ +.+. .+....-.++|++||+..| .++|... .....+.+.+.||||+|.++
T Consensus 152 ~LGLtvg~i~~-~~~~-~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 152 FLGLSVGLIQQ-DMSP-EERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HhCCeEEEECC-CCCh-HHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 99999999877 3333 3445556899999999886 5555432 22345788999999999654
No 138
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.65 E-value=3.6e-15 Score=139.04 Aligned_cols=144 Identities=44% Similarity=0.617 Sum_probs=110.2
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHH
Q 004567 104 RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEK 183 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~ 183 (744)
+++++.++||+|||.+++.++...+.. ....+++|++|++.|+.|+.+.+...... +..+..+.+.........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-----~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 74 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-----LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEK 74 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-----ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHH
Confidence 468999999999999988887776543 23567999999999999999999887765 566777777444443334
Q ss_pred HhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeecc
Q 004567 184 EHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQ 254 (744)
Q Consensus 184 ~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~ 254 (744)
......+|+|+|++.+...+.... .....+.++||||+|.+....+...............+++++|||+
T Consensus 75 ~~~~~~~i~i~t~~~~~~~~~~~~-~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 75 LLSGKTDIVVGTPGRLLDELERLK-LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HhcCCCCEEEECcHHHHHHHHcCC-cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 445689999999999988877653 3356788999999999887665544333445556778999999995
No 139
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.65 E-value=9.4e-15 Score=170.60 Aligned_cols=318 Identities=20% Similarity=0.241 Sum_probs=213.1
Q ss_pred CCcHHHHHHHHHHH--c--CCCEEEEccCCCchhHHhHHHHHHHHHhc--cCCCCCCceEEEEcCChHHHHHHHHHHHHh
Q 004567 88 KMTDIQRASLPHSL--C--GRDILGAAKTGSGKTLAFVIPVLEKLYKE--RWGPEDGVGSIIISPTRELADQLFDVLKAV 161 (744)
Q Consensus 88 ~~t~iQ~~aip~il--~--g~dvlv~a~TGSGKTla~llpil~~L~~~--~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~ 161 (744)
.++.||++.++++. . +=+.|+|..+|-||||..+--+..-.|++ +.........|||||+ .|+--|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 46889999998754 2 45789999999999998655555555554 2223344558999997 6888899999998
Q ss_pred hccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHhC
Q 004567 162 GKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 241 (744)
Q Consensus 162 ~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~l 241 (744)
+.. +++...+|+............+.+|+|++++-+.+-+.. +.-..+.++|+||-|-|-+. ...+.+.+..+
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~---l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL 1126 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY---LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQL 1126 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH---HHhcccceEEecCcceecch--HHHHHHHHHHH
Confidence 876 566666774444444445556789999999988643332 22246779999999977654 44555556666
Q ss_pred CCCCcEEEEeecc-ChhHHHHHHHh-cCCCcccccc----------------c---------------------------
Q 004567 242 PKHRQTFLFSATQ-TKSVQDLARLS-LKDPQYLSVH----------------E--------------------------- 276 (744)
Q Consensus 242 p~~~q~ll~SAT~-~~~v~~la~~~-l~~p~~i~v~----------------~--------------------------- 276 (744)
..+. .+.+|+|+ .+++.++..++ +--|.|+... .
T Consensus 1127 ~a~h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LR 1205 (1549)
T KOG0392|consen 1127 RANH-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLR 1205 (1549)
T ss_pred hhcc-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHH
Confidence 5444 45567774 33344332221 1112111100 0
Q ss_pred ----ccc-ccCccccceeEEE--------------------------------------------------------cC-
Q 004567 277 ----ESV-TATPNRLQQTAMI--------------------------------------------------------VP- 294 (744)
Q Consensus 277 ----~~~-~~~~~~l~q~~~~--------------------------------------------------------~~- 294 (744)
.-. ..+|..++-+|+. .+
T Consensus 1206 RlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~ 1285 (1549)
T KOG0392|consen 1206 RLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPV 1285 (1549)
T ss_pred HHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCC
Confidence 000 0011111111111 10
Q ss_pred ----------------------hhhHHHHHHHHHHHhC----------------CCcEEEEecchHHHHHHHHHHHh-hC
Q 004567 295 ----------------------LEQKLDMLWSFIKAHL----------------NSKILVFLTSCKQVKYVFEAFKK-LR 335 (744)
Q Consensus 295 ----------------------~~~kl~~L~~lLk~~~----------------~~k~IVF~~s~~~v~~l~~~L~~-l~ 335 (744)
...|+.+|-.+|.... ..++||||.-....+-+.+-|.+ ..
T Consensus 1286 hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~m 1365 (1549)
T KOG0392|consen 1286 HPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYM 1365 (1549)
T ss_pred cchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhc
Confidence 0124555555554321 35899999999999888776654 44
Q ss_pred CCCcEEEeeCCCCHHHHHHHHHHHhc--cCC-eEEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCe
Q 004567 336 PGIPLMCLYGRMKQDRRMAIYAQFCE--KRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGR 412 (744)
Q Consensus 336 ~g~~v~~lhg~~~~~~R~~i~~~F~~--~~~-VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~ 412 (744)
|.+.-+.+.|..++.+|.++.++|.+ ... +|++|-|.+-|+|+ .+.+.||+++--|++..-+|.+.||.|.|+...
T Consensus 1366 psVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNL-TGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrv 1444 (1549)
T KOG0392|consen 1366 PSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNL-TGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRV 1444 (1549)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeecccccccc-CCCceEEEEecCCCchhhHHHHHHHHhhcCcee
Confidence 66667789999999999999999999 444 56678999999999 999999999999999999999999999998755
Q ss_pred EEE
Q 004567 413 SVL 415 (744)
Q Consensus 413 ~il 415 (744)
+-+
T Consensus 1445 VNV 1447 (1549)
T KOG0392|consen 1445 VNV 1447 (1549)
T ss_pred eee
Confidence 443
No 140
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.64 E-value=4.7e-15 Score=161.86 Aligned_cols=305 Identities=21% Similarity=0.288 Sum_probs=193.7
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHH
Q 004567 104 RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEK 183 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~ 183 (744)
+-++-+|||.||||.- +|+++.. ....++.-|.|-||.++++.++..+ +.|.+++|........
T Consensus 192 kIi~H~GPTNSGKTy~----ALqrl~~-------aksGvycGPLrLLA~EV~~r~na~g----ipCdL~TGeE~~~~~~- 255 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYR----ALQRLKS-------AKSGVYCGPLRLLAHEVYDRLNALG----IPCDLLTGEERRFVLD- 255 (700)
T ss_pred eEEEEeCCCCCchhHH----HHHHHhh-------hccceecchHHHHHHHHHHHhhhcC----CCccccccceeeecCC-
Confidence 3466789999999976 4666633 3457999999999999999888765 7788888832211111
Q ss_pred HhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHH-HHhCCCCCcEEEEeeccChhHHHHH
Q 004567 184 EHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAI-VSQLPKHRQTFLFSATQTKSVQDLA 262 (744)
Q Consensus 184 ~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~I-l~~lp~~~q~ll~SAT~~~~v~~la 262 (744)
.-..++.+-||-++. .. -..+++.||||+++|-|...+..+.+- +.......+.++ .+++-++.
T Consensus 256 -~~~~a~hvScTVEM~--------sv-~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG-----epsvldlV 320 (700)
T KOG0953|consen 256 -NGNPAQHVSCTVEMV--------SV-NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG-----EPSVLDLV 320 (700)
T ss_pred -CCCcccceEEEEEEe--------ec-CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC-----CchHHHHH
Confidence 123477888886654 11 256789999999999987666555443 333223333322 12344444
Q ss_pred HHhcCCC-ccccccccccccCccccceeEEEcChhhHHHHHHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEE
Q 004567 263 RLSLKDP-QYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLM 341 (744)
Q Consensus 263 ~~~l~~p-~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl~~L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~ 341 (744)
+..+... .-+.+ ..|-....-.-.+.+..-+.....+.+||-+ |++..-.+...+.+. .+..+.
T Consensus 321 ~~i~k~TGd~vev-------------~~YeRl~pL~v~~~~~~sl~nlk~GDCvV~F-Skk~I~~~k~kIE~~-g~~k~a 385 (700)
T KOG0953|consen 321 RKILKMTGDDVEV-------------REYERLSPLVVEETALGSLSNLKPGDCVVAF-SKKDIFTVKKKIEKA-GNHKCA 385 (700)
T ss_pred HHHHhhcCCeeEE-------------EeecccCcceehhhhhhhhccCCCCCeEEEe-ehhhHHHHHHHHHHh-cCcceE
Confidence 4332210 01111 1111111111122444445555566676655 466666677777664 345699
Q ss_pred EeeCCCCHHHHHHHHHHHhc---cCCeEEEccccccccccCCCCcEEEEcCC---------CCCHhHHHHHhhccCcCCC
Q 004567 342 CLYGRMKQDRRMAIYAQFCE---KRSVLFCTDVASRGLDFNKAVDWVVQVDC---------PEDVASYIHRVGRTARYNS 409 (744)
Q Consensus 342 ~lhg~~~~~~R~~i~~~F~~---~~~VLVaTdv~arGlDi~p~V~~VI~~d~---------P~s~~~yiQRiGRagR~g~ 409 (744)
+++|+++++.|.+--..|.+ ..+||||||++++|||+ +++.||++++ |.++.+..|.+|||||.|.
T Consensus 386 VIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL--~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s 463 (700)
T KOG0953|consen 386 VIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL--NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGS 463 (700)
T ss_pred EEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc--ceeEEEEeecccCCcccceeccHHHHHHHhhccccccc
Confidence 99999999999999999988 67999999999999999 5999999987 4578899999999999975
Q ss_pred ---CCeEEEEeCcchHHHHHHHHHcCCCcccccccccccccHHHHHHHHHhcChh
Q 004567 410 ---GGRSVLFLTPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPD 461 (744)
Q Consensus 410 ---~G~~il~l~~~e~~~l~~l~~~~i~i~~~~~~~~~~~~i~~~l~~~~~~~~~ 461 (744)
.|.+..|... +...+..+.+. |++.+ ...-+-....+++.++..-|+
T Consensus 464 ~~~~G~vTtl~~e-DL~~L~~~l~~--p~epi--~~agl~pt~eqie~fa~~~Pd 513 (700)
T KOG0953|consen 464 KYPQGEVTTLHSE-DLKLLKRILKR--PVEPI--KNAGLWPTDEQIELFAYHLPD 513 (700)
T ss_pred CCcCceEEEeeHh-hHHHHHHHHhC--CchHH--HhccCCccHHHHHHHHHhCCC
Confidence 4666555432 33555554443 32222 122233344566666666554
No 141
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.60 E-value=3.7e-14 Score=152.78 Aligned_cols=310 Identities=17% Similarity=0.202 Sum_probs=204.4
Q ss_pred CCcHHHHHHHHHHHc-CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCC
Q 004567 88 KMTDIQRASLPHSLC-GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHN 166 (744)
Q Consensus 88 ~~t~iQ~~aip~il~-g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~ 166 (744)
.+-|+|++.+..++. |..++++..+|-|||+.++ .+...|+..|+ .|||||.. |-..|.+.+++|.....
T Consensus 198 ~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAl--aIA~yyraEwp------lliVcPAs-vrftWa~al~r~lps~~ 268 (689)
T KOG1000|consen 198 RLLPFQREGVIFALERGGRILLADEMGLGKTIQAL--AIARYYRAEWP------LLIVCPAS-VRFTWAKALNRFLPSIH 268 (689)
T ss_pred hhCchhhhhHHHHHhcCCeEEEecccccchHHHHH--HHHHHHhhcCc------EEEEecHH-HhHHHHHHHHHhccccc
Confidence 478899999988774 6779999999999999853 33445665443 78889875 55668888998876433
Q ss_pred ceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHhCCCCCc
Q 004567 167 FSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 246 (744)
Q Consensus 167 ~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q 246 (744)
. +.++.+ +.+.-. ..-....|.|.+++.|..+-. .+....+.+||+||.|.+-+.. ......++..+..-.+
T Consensus 269 p-i~vv~~-~~D~~~--~~~t~~~v~ivSye~ls~l~~---~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~akh 340 (689)
T KOG1000|consen 269 P-IFVVDK-SSDPLP--DVCTSNTVAIVSYEQLSLLHD---ILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAKH 340 (689)
T ss_pred c-eEEEec-ccCCcc--ccccCCeEEEEEHHHHHHHHH---HHhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhhh
Confidence 3 444555 222111 112345788999988754432 3445678999999999877654 2334555555555567
Q ss_pred EEEEeeccChh-------------------HHHHHHHhcCCCc---ccccc----------------------ccccccC
Q 004567 247 TFLFSATQTKS-------------------VQDLARLSLKDPQ---YLSVH----------------------EESVTAT 282 (744)
Q Consensus 247 ~ll~SAT~~~~-------------------v~~la~~~l~~p~---~i~v~----------------------~~~~~~~ 282 (744)
+||+|+|+.-+ -..++..++.... +.... ..-....
T Consensus 341 vILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qL 420 (689)
T KOG1000|consen 341 VILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQL 420 (689)
T ss_pred eEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999995321 1111111111000 00000 0001112
Q ss_pred ccccceeEEEcCh-------------------------------------hhHHHHHHHHHHHh------CCCcEEEEec
Q 004567 283 PNRLQQTAMIVPL-------------------------------------EQKLDMLWSFIKAH------LNSKILVFLT 319 (744)
Q Consensus 283 ~~~l~q~~~~~~~-------------------------------------~~kl~~L~~lLk~~------~~~k~IVF~~ 319 (744)
|..-.+.++++.. ..|+..+.+.|..+ ...|.+|||.
T Consensus 421 PpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaH 500 (689)
T KOG1000|consen 421 PPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAH 500 (689)
T ss_pred CccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEeh
Confidence 2221222222211 01223333344332 2679999999
Q ss_pred chHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc--cCC-eEEEccccccccccCCCCcEEEEcCCCCCHhH
Q 004567 320 SCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE--KRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVAS 396 (744)
Q Consensus 320 s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~--~~~-VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~ 396 (744)
.....+.+...+++. ++....+.|..+...|....+.|+. ... .+++-.+++.||+| .+.+.||+...++++--
T Consensus 501 H~~vLd~Iq~~~~~r--~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~-tAa~~VVFaEL~wnPgv 577 (689)
T KOG1000|consen 501 HQIVLDTIQVEVNKR--KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTL-TAASVVVFAELHWNPGV 577 (689)
T ss_pred hHHHHHHHHHHHHHc--CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceee-eccceEEEEEecCCCce
Confidence 999999999999886 8999999999999999999999988 333 35566788999999 89999999999999999
Q ss_pred HHHHhhccCcCCCCCeEEEEe
Q 004567 397 YIHRVGRTARYNSGGRSVLFL 417 (744)
Q Consensus 397 yiQRiGRagR~g~~G~~il~l 417 (744)
.+|.-.|+.|.|+...+.+.+
T Consensus 578 LlQAEDRaHRiGQkssV~v~y 598 (689)
T KOG1000|consen 578 LLQAEDRAHRIGQKSSVFVQY 598 (689)
T ss_pred EEechhhhhhccccceeeEEE
Confidence 999999999999976554443
No 142
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.60 E-value=1.7e-14 Score=168.79 Aligned_cols=320 Identities=19% Similarity=0.257 Sum_probs=216.2
Q ss_pred CCcHHHHHHHHHHHcC-CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHH-hhccC
Q 004567 88 KMTDIQRASLPHSLCG-RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKA-VGKHH 165 (744)
Q Consensus 88 ~~t~iQ~~aip~il~g-~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~-~~~~~ 165 (744)
...|+|.++++.+... .++++.+|+|||||.|+-++++. +..-.+++++.|..+.+...+..+.+ ++...
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~--------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~ 1214 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR--------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLL 1214 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC--------CccceEEEEecchHHHHHHHHHHHHHhhcccc
Confidence 3489999999988775 45999999999999998887775 24567899999999999877777654 55556
Q ss_pred CceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccc-----hHHHHHHHHHh
Q 004567 166 NFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG-----FKKALNAIVSQ 240 (744)
Q Consensus 166 ~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~g-----f~~~l~~Il~~ 240 (744)
|..+..+.| .... ........+|+|+||+++-.. . ....+++.|.||+|.+.+.. .-..+..|-.+
T Consensus 1215 G~~~~~l~g-e~s~--~lkl~~~~~vii~tpe~~d~l-q-----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q 1285 (1674)
T KOG0951|consen 1215 GLRIVKLTG-ETSL--DLKLLQKGQVIISTPEQWDLL-Q-----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQ 1285 (1674)
T ss_pred CceEEecCC-cccc--chHHhhhcceEEechhHHHHH-h-----hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHH
Confidence 777777776 4433 334556789999999998443 2 34788999999999887432 01125666677
Q ss_pred CCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccc---eeEEEcChhhHH----HHHHHHHHHh--CC
Q 004567 241 LPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQ---QTAMIVPLEQKL----DMLWSFIKAH--LN 311 (744)
Q Consensus 241 lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~---q~~~~~~~~~kl----~~L~~lLk~~--~~ 311 (744)
+-+..+++.+|..+.+.- ++ .++.....++..... .|..+. |.+-.......+ ...+.-+.++ ..
T Consensus 1286 ~~k~ir~v~ls~~lana~-d~--ig~s~~~v~Nf~p~~---R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~ 1359 (1674)
T KOG0951|consen 1286 LEKKIRVVALSSSLANAR-DL--IGASSSGVFNFSPSV---RPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNR 1359 (1674)
T ss_pred HHhheeEEEeehhhccch-hh--ccccccceeecCccc---CCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCC
Confidence 778889999999887653 33 233322233222221 122222 222222222222 1222333333 26
Q ss_pred CcEEEEecchHHHHHHHHHHHhhC--------------------CCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEcc
Q 004567 312 SKILVFLTSCKQVKYVFEAFKKLR--------------------PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD 370 (744)
Q Consensus 312 ~k~IVF~~s~~~v~~l~~~L~~l~--------------------~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTd 370 (744)
++.+||+++++.|..++..|-... ...+...-|-+++..+...+-..|.. ...|+|...
T Consensus 1360 k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~ 1439 (1674)
T KOG0951|consen 1360 KPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSR 1439 (1674)
T ss_pred CCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEc
Confidence 899999999999988765543211 11222233889999888888888888 667777765
Q ss_pred ccccccccCCCCcEEEEcCC-----------CCCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHHcCCCcc
Q 004567 371 VASRGLDFNKAVDWVVQVDC-----------PEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKIPIH 436 (744)
Q Consensus 371 v~arGlDi~p~V~~VI~~d~-----------P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~~~i~i~ 436 (744)
- ..|+-. . .+.||..+. +.+.+...|++|+|.| .|.|+++.....+.+++.+....+|++
T Consensus 1440 ~-~~~~~~-~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~e~lPve 1510 (1674)
T KOG0951|consen 1440 D-CYGTKL-K-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLYEPLPVE 1510 (1674)
T ss_pred c-cccccc-c-ceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhccCcCchH
Confidence 5 788877 3 566665432 4578899999999998 689999999988888887755555543
No 143
>COG4889 Predicted helicase [General function prediction only]
Probab=99.59 E-value=1.6e-14 Score=163.43 Aligned_cols=313 Identities=18% Similarity=0.202 Sum_probs=182.1
Q ss_pred CCCCCCcHHHHHHHHHHHcC----CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHH
Q 004567 84 AGFVKMTDIQRASLPHSLCG----RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLK 159 (744)
Q Consensus 84 ~gf~~~t~iQ~~aip~il~g----~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~ 159 (744)
..-..|+|+|+.||..++.| ..--+.+.+|+|||++. +-+.+.|. ..++|+|+|+..|..|..+.+.
T Consensus 157 ~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTs-LkisEala--------~~~iL~LvPSIsLLsQTlrew~ 227 (1518)
T COG4889 157 KKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTS-LKISEALA--------AARILFLVPSISLLSQTLREWT 227 (1518)
T ss_pred CCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchH-HHHHHHHh--------hhheEeecchHHHHHHHHHHHh
Confidence 34457999999999999876 12345567899999984 55666663 3669999999999999888776
Q ss_pred HhhccCCceEEEEEcCccC----------------------hHH---HHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCc
Q 004567 160 AVGKHHNFSAGLLIGGRRD----------------------VDM---EKEHVNELNILVCTPGRLLQHMDETPNFDCSQL 214 (744)
Q Consensus 160 ~~~~~~~~~~~~l~Gg~~~----------------------~~~---e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l 214 (744)
.- ....+....++.+.+- +-. ......+..|+++|++.+...-... ..-+..+
T Consensus 228 ~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQ-e~G~~~f 305 (1518)
T COG4889 228 AQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQ-EAGLDEF 305 (1518)
T ss_pred hc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHH-HcCCCCc
Confidence 53 2334555544442110 000 1112246789999999987644322 3345889
Q ss_pred eEEEEcCchhhhccchHHHHHHHHHhCC-----CCCcEEEEeeccC---hhHHHHHHH----------------------
Q 004567 215 QILILDEADRILDVGFKKALNAIVSQLP-----KHRQTFLFSATQT---KSVQDLARL---------------------- 264 (744)
Q Consensus 215 ~~lVlDEAh~lld~gf~~~l~~Il~~lp-----~~~q~ll~SAT~~---~~v~~la~~---------------------- 264 (744)
++||.|||||-........=..-+.... +....+.|+||+. .+.+.-+..
T Consensus 306 DliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~ 385 (1518)
T COG4889 306 DLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLG 385 (1518)
T ss_pred cEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhccc
Confidence 9999999998654321110000000000 0123566778742 222221111
Q ss_pred --------hcCCCccccccccccccCccccceeEEEcChhh------HHHHHHHHHHHhC---------------CCcEE
Q 004567 265 --------SLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ------KLDMLWSFIKAHL---------------NSKIL 315 (744)
Q Consensus 265 --------~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~------kl~~L~~lLk~~~---------------~~k~I 315 (744)
.+.+..++...... ......+++........- ++--.|.-|.... -.+.|
T Consensus 386 FgeAv~rdlLTDYKVmvlaVd~-~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAI 464 (1518)
T COG4889 386 FGEAVERDLLTDYKVMVLAVDK-EVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAI 464 (1518)
T ss_pred HHHHHHhhhhccceEEEEEech-hhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHH
Confidence 11121111110000 000011111111111111 2222232222111 13678
Q ss_pred EEecchHHHHHHHHHHHhh-----------CCCCc--EEEeeCCCCHHHHHHHHHHH---hc-cCCeEEEcccccccccc
Q 004567 316 VFLTSCKQVKYVFEAFKKL-----------RPGIP--LMCLYGRMKQDRRMAIYAQF---CE-KRSVLFCTDVASRGLDF 378 (744)
Q Consensus 316 VF~~s~~~v~~l~~~L~~l-----------~~g~~--v~~lhg~~~~~~R~~i~~~F---~~-~~~VLVaTdv~arGlDi 378 (744)
-||.+.++...+.+.|.+. ++++. +-+..|.|...+|...+..- .. .++||--...++.|+|+
T Consensus 465 aF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDV 544 (1518)
T COG4889 465 AFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDV 544 (1518)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCc
Confidence 8998888777776655432 34444 55566999999995554432 33 56677777899999999
Q ss_pred CCCCcEEEEcCCCCCHhHHHHHhhccCcCCC
Q 004567 379 NKAVDWVVQVDCPEDVASYIHRVGRTARYNS 409 (744)
Q Consensus 379 ~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~ 409 (744)
|..+.||+|++..+..+.+|.+||+.|-..
T Consensus 545 -PaLDsViFf~pr~smVDIVQaVGRVMRKa~ 574 (1518)
T COG4889 545 -PALDSVIFFDPRSSMVDIVQAVGRVMRKAK 574 (1518)
T ss_pred -cccceEEEecCchhHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999643
No 144
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.58 E-value=1.3e-14 Score=143.14 Aligned_cols=153 Identities=22% Similarity=0.258 Sum_probs=103.3
Q ss_pred CCcHHHHHHHHHHHc-------CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHH
Q 004567 88 KMTDIQRASLPHSLC-------GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKA 160 (744)
Q Consensus 88 ~~t~iQ~~aip~il~-------g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~ 160 (744)
+|+++|.+++..+.. .+++++.+|||||||.+++..+.+.. . +++|++|+..|+.|+...+..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-~---------~~l~~~p~~~l~~Q~~~~~~~ 72 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-R---------KVLIVAPNISLLEQWYDEFDD 72 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-C---------EEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-c---------ceeEecCHHHHHHHHHHHHHH
Confidence 589999999998884 58899999999999999776555554 1 799999999999999999976
Q ss_pred hhccCCceEEE-----------EEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCC----------CCCCCceEEEE
Q 004567 161 VGKHHNFSAGL-----------LIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPN----------FDCSQLQILIL 219 (744)
Q Consensus 161 ~~~~~~~~~~~-----------l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~----------~~~~~l~~lVl 219 (744)
+.......... ..................+++++|..+|......... .......+||+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~ 152 (184)
T PF04851_consen 73 FGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVII 152 (184)
T ss_dssp HSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEE
T ss_pred hhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEE
Confidence 65432111111 1110111122233345789999999999877654211 12346789999
Q ss_pred cCchhhhccchHHHHHHHHHhCCCCCcEEEEeeccC
Q 004567 220 DEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQT 255 (744)
Q Consensus 220 DEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~ 255 (744)
||||++....- ...++. .....+|+||||+.
T Consensus 153 DEaH~~~~~~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 153 DEAHHYPSDSS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp ETGGCTHHHHH---HHHHHH--SSCCEEEEEESS-S
T ss_pred ehhhhcCCHHH---HHHHHc--CCCCeEEEEEeCcc
Confidence 99999876541 333333 44567999999975
No 145
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.58 E-value=5.5e-15 Score=125.97 Aligned_cols=76 Identities=32% Similarity=0.524 Sum_probs=71.9
Q ss_pred HHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCC
Q 004567 330 AFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYN 408 (744)
Q Consensus 330 ~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g 408 (744)
.|+. +++.+..+||++++.+|..+++.|.. ...|||||+++++|+|+ |.+++||+++.|+++..|+|++||++|.|
T Consensus 2 ~L~~--~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~-~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 2 FLEK--KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDL-PDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHH--TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTS-TTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ChHH--CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccc-cccccccccccCCCHHHHHHHhhcCCCCC
Confidence 3444 49999999999999999999999999 88999999999999999 99999999999999999999999999986
No 146
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.54 E-value=2.3e-12 Score=153.15 Aligned_cols=114 Identities=25% Similarity=0.294 Sum_probs=82.3
Q ss_pred HHHHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cC-CeEEEccccccccc
Q 004567 300 DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KR-SVLFCTDVASRGLD 377 (744)
Q Consensus 300 ~~L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~-~VLVaTdv~arGlD 377 (744)
..+..++... ++++||||+|....+.+++.+...... -....+|... +..+++.|.. .. .++|+|..+++|||
T Consensus 469 ~~i~~~~~~~-~~~~lvlF~Sy~~l~~~~~~~~~~~~~-~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD 543 (654)
T COG1199 469 AYLREILKAS-PGGVLVLFPSYEYLKRVAERLKDERST-LPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVD 543 (654)
T ss_pred HHHHHHHhhc-CCCEEEEeccHHHHHHHHHHHhhcCcc-ceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCccc
Confidence 3445555554 559999999999999999999875222 2344455443 4488899988 44 89999999999999
Q ss_pred cCCC--CcEEEEcCCCC------------------------------CHhHHHHHhhccCcCCCCCeEEEEeCc
Q 004567 378 FNKA--VDWVVQVDCPE------------------------------DVASYIHRVGRTARYNSGGRSVLFLTP 419 (744)
Q Consensus 378 i~p~--V~~VI~~d~P~------------------------------s~~~yiQRiGRagR~g~~G~~il~l~~ 419 (744)
| |+ +.+||....|. -.....|.+||+-|.-.+.-++++++.
T Consensus 544 ~-~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 544 F-PGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred C-CCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 9 76 57899888864 235679999999996554444444443
No 147
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.51 E-value=1.3e-12 Score=154.40 Aligned_cols=310 Identities=22% Similarity=0.214 Sum_probs=183.4
Q ss_pred CCcHHHHHHHHHHHc----C--CC--EEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHH
Q 004567 88 KMTDIQRASLPHSLC----G--RD--ILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLK 159 (744)
Q Consensus 88 ~~t~iQ~~aip~il~----g--~d--vlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~ 159 (744)
.-..||-.|+..+.. . .- +|-.|.||||||++ -.-|+..|..+ ..|.+..|..-.|.|..|+-+.++
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~a-NARImyaLsd~----~~g~RfsiALGLRTLTLQTGda~r 482 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLA-NARAMYALRDD----KQGARFAIALGLRSLTLQTGHALK 482 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHH-HHHHHHHhCCC----CCCceEEEEccccceeccchHHHH
Confidence 346799999988774 1 11 55679999999996 45555555332 567788999999999999999888
Q ss_pred HhhccCCceEEEEEcCccChH----------------------------------H-----------------HHHhcCC
Q 004567 160 AVGKHHNFSAGLLIGGRRDVD----------------------------------M-----------------EKEHVNE 188 (744)
Q Consensus 160 ~~~~~~~~~~~~l~Gg~~~~~----------------------------------~-----------------e~~~~~~ 188 (744)
.-...-.-...+++|+..... . .....-.
T Consensus 483 ~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~ 562 (1110)
T TIGR02562 483 TRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLA 562 (1110)
T ss_pred HhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhc
Confidence 755433334444555211000 0 0000112
Q ss_pred CcEEEEChHHHHHHHhcC--CCCCCC--C--ceEEEEcCchhhhccchHHHHHHHH---HhCCCCCcEEEEeeccChhHH
Q 004567 189 LNILVCTPGRLLQHMDET--PNFDCS--Q--LQILILDEADRILDVGFKKALNAIV---SQLPKHRQTFLFSATQTKSVQ 259 (744)
Q Consensus 189 ~~IlV~TPgrLl~~l~~~--~~~~~~--~--l~~lVlDEAh~lld~gf~~~l~~Il---~~lp~~~q~ll~SAT~~~~v~ 259 (744)
..|+|||+..++-..... +...+. . -+.|||||+|.+-...+ ..|..++ ..+ ...++++|||+|+.+.
T Consensus 563 apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~-~~L~rlL~w~~~l--G~~VlLmSATLP~~l~ 639 (1110)
T TIGR02562 563 APVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDL-PALLRLVQLAGLL--GSRVLLSSATLPPALV 639 (1110)
T ss_pred CCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHH-HHHHHHHHHHHHc--CCCEEEEeCCCCHHHH
Confidence 479999999988766321 111111 1 25799999996543322 2233333 344 4679999999999876
Q ss_pred HH-HHHh----------cCCC---ccc---cccccc--------------------------cccCccccceeEEEcChh
Q 004567 260 DL-ARLS----------LKDP---QYL---SVHEES--------------------------VTATPNRLQQTAMIVPLE 296 (744)
Q Consensus 260 ~l-a~~~----------l~~p---~~i---~v~~~~--------------------------~~~~~~~l~q~~~~~~~~ 296 (744)
.. ...+ ...| ..| .+++.. ....+..-.-..+.++..
T Consensus 640 ~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~ 719 (1110)
T TIGR02562 640 KTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSL 719 (1110)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCc
Confidence 52 2222 1111 111 011100 001111111112222221
Q ss_pred -----hHHHHHHHHH--------HHhC------CCc---EEEEecchHHHHHHHHHHHhhCC----CCcEEEeeCCCCHH
Q 004567 297 -----QKLDMLWSFI--------KAHL------NSK---ILVFLTSCKQVKYVFEAFKKLRP----GIPLMCLYGRMKQD 350 (744)
Q Consensus 297 -----~kl~~L~~lL--------k~~~------~~k---~IVF~~s~~~v~~l~~~L~~l~~----g~~v~~lhg~~~~~ 350 (744)
.....+...+ ..|. +++ .+|-+++++.+-.++..|....+ .+.++++|+.....
T Consensus 720 ~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~ 799 (1110)
T TIGR02562 720 PRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLL 799 (1110)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHH
Confidence 1222222222 1111 111 46777877777777777665532 34588999999988
Q ss_pred HHHHHHHHHh----------------------c-----cCCeEEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhc
Q 004567 351 RRMAIYAQFC----------------------E-----KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGR 403 (744)
Q Consensus 351 ~R~~i~~~F~----------------------~-----~~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGR 403 (744)
.|..+.+... + ...|+|+|.+++.|+|+ +.+|+|- -|.+++..+||+||
T Consensus 800 ~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~--dfd~~~~--~~~~~~sliQ~aGR 875 (1110)
T TIGR02562 800 LRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH--DYDWAIA--DPSSMRSIIQLAGR 875 (1110)
T ss_pred HHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc--cCCeeee--ccCcHHHHHHHhhc
Confidence 8887765531 1 23699999999999998 4787765 46679999999999
Q ss_pred cCcCCC
Q 004567 404 TARYNS 409 (744)
Q Consensus 404 agR~g~ 409 (744)
+.|.|.
T Consensus 876 ~~R~~~ 881 (1110)
T TIGR02562 876 VNRHRL 881 (1110)
T ss_pred cccccc
Confidence 999876
No 148
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.50 E-value=3.3e-12 Score=149.49 Aligned_cols=287 Identities=13% Similarity=0.160 Sum_probs=174.2
Q ss_pred EEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccCh----HHH
Q 004567 107 LGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDV----DME 182 (744)
Q Consensus 107 lv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~----~~e 182 (744)
+..+.+|||||.+|+-.+-..+ ..|.++|||+|...|+.|+...|+..+. +..+..++++-... .+.
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l-------~~Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~ 234 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATL-------RAGRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWL 234 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHH-------HcCCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHH
Confidence 3344469999999988777766 3478899999999999999999987653 13455566533322 122
Q ss_pred HHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhh--c-cc---hHHHHHHHHHhCCCCCcEEEEeeccCh
Q 004567 183 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRIL--D-VG---FKKALNAIVSQLPKHRQTFLFSATQTK 256 (744)
Q Consensus 183 ~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~ll--d-~g---f~~~l~~Il~~lp~~~q~ll~SAT~~~ 256 (744)
....+...|+|||-..+ ...+.++.+|||||-|.-. + .+ ....+...... ..+..+|+.|||++-
T Consensus 235 ~~~~G~~~IViGtRSAv--------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~-~~~~~lvLgSaTPSl 305 (665)
T PRK14873 235 AVLRGQARVVVGTRSAV--------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAH-QHGCALLIGGHARTA 305 (665)
T ss_pred HHhCCCCcEEEEcceeE--------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHH-HcCCcEEEECCCCCH
Confidence 22335689999994433 4467899999999999322 1 11 12333333333 356889999999875
Q ss_pred hHHHHHHHhcCCCccccccccccccCccccceeEEEcC-h--------h---hHHHHHHHHHHHhC-CCcEEEEecch--
Q 004567 257 SVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP-L--------E---QKLDMLWSFIKAHL-NSKILVFLTSC-- 321 (744)
Q Consensus 257 ~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~-~--------~---~kl~~L~~lLk~~~-~~k~IVF~~s~-- 321 (744)
.....+..... ..+......... .+....++-. . . .--..++..++... .+++|||+|.+
T Consensus 306 es~~~~~~g~~--~~~~~~~~~~~~---~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~lnRrGy 380 (665)
T PRK14873 306 EAQALVESGWA--HDLVAPRPVVRA---RAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVPRRGY 380 (665)
T ss_pred HHHHHHhcCcc--eeeccccccccC---CCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEecCCCC
Confidence 54443332211 101100000000 0111100000 0 0 00123444444322 23777776432
Q ss_pred ---------------------------------------------------------HHHHHHHHHHHhhCCCCcEEEee
Q 004567 322 ---------------------------------------------------------KQVKYVFEAFKKLRPGIPLMCLY 344 (744)
Q Consensus 322 ---------------------------------------------------------~~v~~l~~~L~~l~~g~~v~~lh 344 (744)
-.++.+.+.|.+.+|+.++..+.
T Consensus 381 ap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d 460 (665)
T PRK14873 381 VPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSG 460 (665)
T ss_pred CCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEEC
Confidence 13588888999999999998876
Q ss_pred CCCCHHHHHHHHHHHhccCCeEEEcc----ccccccccCCCCcEEEEcCC------CC------CHhHHHHHhhccCcCC
Q 004567 345 GRMKQDRRMAIYAQFCEKRSVLFCTD----VASRGLDFNKAVDWVVQVDC------PE------DVASYIHRVGRTARYN 408 (744)
Q Consensus 345 g~~~~~~R~~i~~~F~~~~~VLVaTd----v~arGlDi~p~V~~VI~~d~------P~------s~~~yiQRiGRagR~g 408 (744)
++ .++..|..+..|||+|. +++ | ++..|+.+|. |. ....+.|.+||+||.+
T Consensus 461 ~d-------~~l~~~~~~~~IlVGTqgaepm~~-g-----~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~ 527 (665)
T PRK14873 461 GD-------QVVDTVDAGPALVVATPGAEPRVE-G-----GYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRA 527 (665)
T ss_pred hH-------HHHHhhccCCCEEEECCCCccccc-C-----CceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCC
Confidence 54 37888866899999999 666 2 3556655553 21 3456789999999999
Q ss_pred CCCeEEEEeCcchHHHHHHHHH
Q 004567 409 SGGRSVLFLTPTEMKMLEKLRE 430 (744)
Q Consensus 409 ~~G~~il~l~~~e~~~l~~l~~ 430 (744)
..|.+++...|.. ..++.+..
T Consensus 528 ~~G~V~iq~~p~~-~~~~~l~~ 548 (665)
T PRK14873 528 DGGQVVVVAESSL-PTVQALIR 548 (665)
T ss_pred CCCEEEEEeCCCC-HHHHHHHh
Confidence 9999999865543 34444433
No 149
>PF13959 DUF4217: Domain of unknown function (DUF4217)
Probab=99.50 E-value=3.8e-14 Score=116.18 Aligned_cols=64 Identities=33% Similarity=0.558 Sum_probs=61.4
Q ss_pred cHHHHHHHHHhcChhHHHHHHHHHHHHHHHhccC-CCcccccccCCCHHHHHHhcCCCCCCCccc
Q 004567 447 PVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQ-KDKEVFDVTKLSIDEFSASLGLPMTPKIRF 510 (744)
Q Consensus 447 ~i~~~l~~~~~~~~~l~~~a~~af~sy~rs~~~~-~~~~if~~~~l~~~~~a~s~gl~~~p~~~~ 510 (744)
+|+.+++.++.+++++.++|++||+||+|+|+.+ .++.||++++|+++++|.||||..+|+|+|
T Consensus 1 ~iq~~l~~~~~~d~~l~~lA~~Af~SyvraY~~~~~~k~iF~~~~L~l~~~A~sfGL~~~P~v~~ 65 (65)
T PF13959_consen 1 NIQQKLEKLVAKDRELKELAQKAFVSYVRAYASHKELKDIFNVKKLDLGHLAKSFGLLEAPKVRE 65 (65)
T ss_pred CHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhCCcccCCHHHHHHHcCCCCCCCCCC
Confidence 4788999999999999999999999999999987 999999999999999999999999999986
No 150
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.47 E-value=7.1e-11 Score=140.40 Aligned_cols=104 Identities=23% Similarity=0.302 Sum_probs=76.4
Q ss_pred CCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-----cCCeEEEccccccccccCCC--Cc
Q 004567 311 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-----KRSVLFCTDVASRGLDFNKA--VD 383 (744)
Q Consensus 311 ~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-----~~~VLVaTdv~arGlDi~p~--V~ 383 (744)
.+.+||||+|....+.++..|.... +..++ .+|. ..|..+++.|++ ...||++|..+..|||+ |+ ++
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~-~~~ll-~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~-pGd~l~ 607 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDL-RLMLL-VQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDL-PGDYLT 607 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhc-CCcEE-EeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccC-CCCceE
Confidence 5669999999999999999987532 34433 4564 256778877764 46799999999999999 76 78
Q ss_pred EEEEcCCCC----CH--------------------------hHHHHHhhccCcCCCCCeEEEEeCcc
Q 004567 384 WVVQVDCPE----DV--------------------------ASYIHRVGRTARYNSGGRSVLFLTPT 420 (744)
Q Consensus 384 ~VI~~d~P~----s~--------------------------~~yiQRiGRagR~g~~G~~il~l~~~ 420 (744)
+||....|. ++ ..+.|.+||.-|...+--+++++++.
T Consensus 608 ~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 608 QVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred EEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 999988763 11 24578889999986654445555554
No 151
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.41 E-value=7e-13 Score=112.85 Aligned_cols=80 Identities=44% Similarity=0.624 Sum_probs=74.5
Q ss_pred HHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhcc
Q 004567 326 YVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRT 404 (744)
Q Consensus 326 ~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRa 404 (744)
.++..|... ++.+..+||+++..+|..++..|.. ...|||+|+++++|+|+ |.+++||.+++|++...|+|++||+
T Consensus 2 ~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~-~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKEL--GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDL-PGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHC--CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcCh-hcCCEEEEeCCCCCHHHHHHhhccc
Confidence 456677765 8899999999999999999999999 88999999999999999 8999999999999999999999999
Q ss_pred CcCC
Q 004567 405 ARYN 408 (744)
Q Consensus 405 gR~g 408 (744)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9975
No 152
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.40 E-value=1.5e-12 Score=150.57 Aligned_cols=318 Identities=16% Similarity=0.188 Sum_probs=194.8
Q ss_pred CCCcHHHHHHHHHHHc----CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhh
Q 004567 87 VKMTDIQRASLPHSLC----GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162 (744)
Q Consensus 87 ~~~t~iQ~~aip~il~----g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~ 162 (744)
.++.+||...+.++.+ +-+-|++-.+|-|||.+- +.++..|+..+. ..|+ -|||||+-.|.+ |...|..+.
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQt-IsLitYLmE~K~--~~GP-~LvivPlstL~N-W~~Ef~kWa 467 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQT-ISLITYLMEHKQ--MQGP-FLIIVPLSTLVN-WSSEFPKWA 467 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHH-HHHHHHHHHHcc--cCCC-eEEeccccccCC-chhhccccc
Confidence 3799999999988775 345889999999999974 555555555432 2344 699999999987 667777776
Q ss_pred ccCCceEEEEEcCccChH---HHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHH
Q 004567 163 KHHNFSAGLLIGGRRDVD---MEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVS 239 (744)
Q Consensus 163 ~~~~~~~~~l~Gg~~~~~---~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~ 239 (744)
. .+..+...| ..... ....+.++.+|+++|++-+.. ....+.--.+.++||||.|+|-+.. ..+...+.
T Consensus 468 P--Sv~~i~YkG-tp~~R~~l~~qir~gKFnVLlTtyEyiik---dk~lLsKI~W~yMIIDEGHRmKNa~--~KLt~~L~ 539 (1157)
T KOG0386|consen 468 P--SVQKIQYKG-TPQQRSGLTKQQRHGKFNVLLTTYEYIIK---DKALLSKISWKYMIIDEGHRMKNAI--CKLTDTLN 539 (1157)
T ss_pred c--ceeeeeeeC-CHHHHhhHHHHHhcccceeeeeeHHHhcC---CHHHHhccCCcceeecccccccchh--hHHHHHhh
Confidence 4 234444444 22111 112223689999999987754 2223334567899999999886542 22222222
Q ss_pred hCCCCCcEEEEeeccChh---------------------------------------------HHHHHHH------hcC-
Q 004567 240 QLPKHRQTFLFSATQTKS---------------------------------------------VQDLARL------SLK- 267 (744)
Q Consensus 240 ~lp~~~q~ll~SAT~~~~---------------------------------------------v~~la~~------~l~- 267 (744)
........+++++|+..+ +-.+-++ ++.
T Consensus 540 t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLR 619 (1157)
T KOG0386|consen 540 THYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLR 619 (1157)
T ss_pred ccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHH
Confidence 111111222333331110 0000000 000
Q ss_pred ---------CCccc-------------------------cccc--c-cc-----------------ccCc----ccccee
Q 004567 268 ---------DPQYL-------------------------SVHE--E-SV-----------------TATP----NRLQQT 289 (744)
Q Consensus 268 ---------~p~~i-------------------------~v~~--~-~~-----------------~~~~----~~l~q~ 289 (744)
.|.-+ .++. . .. .... ..+...
T Consensus 620 RlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~ 699 (1157)
T KOG0386|consen 620 RLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLH 699 (1157)
T ss_pred hhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccc
Confidence 00000 0000 0 00 0000 000000
Q ss_pred EEE---cChhhHHHHHHHHHHH--hCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-c-
Q 004567 290 AMI---VPLEQKLDMLWSFIKA--HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K- 362 (744)
Q Consensus 290 ~~~---~~~~~kl~~L~~lLk~--~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~- 362 (744)
+-. +....|+..|-.+|-. ..+.++|.||....-...+..+|.-. ++....+.|....++|-..+..|.. +
T Consensus 700 ~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~--~~kYlRLDG~TK~~eRg~ll~~FN~Pds 777 (1157)
T KOG0386|consen 700 YDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIR--EYKYLRLDGQTKVEERGDLLEIFNAPDS 777 (1157)
T ss_pred cChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhh--hhheeeecCCcchhhHHHHHHHhcCCCC
Confidence 000 0111233333333322 22789999999888888888887653 8889999999999999999999988 3
Q ss_pred --CCeEEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcc
Q 004567 363 --RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 420 (744)
Q Consensus 363 --~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~ 420 (744)
..+|++|...+.|+|+ ...+.||.||.-|++....|+-.|+.|.|+...+-++....
T Consensus 778 ~yf~FllstragglglNl-Qtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~t 836 (1157)
T KOG0386|consen 778 PYFIFLLSTRAGGLGLNL-QTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLIT 836 (1157)
T ss_pred ceeeeeeeecccccccch-hhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeeh
Confidence 3578999999999999 89999999999999999999999999999876666655443
No 153
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.40 E-value=1.8e-10 Score=137.82 Aligned_cols=74 Identities=19% Similarity=0.210 Sum_probs=60.1
Q ss_pred CCCCCCcHHHHHHHHHHH----cCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHH
Q 004567 84 AGFVKMTDIQRASLPHSL----CGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLK 159 (744)
Q Consensus 84 ~gf~~~t~iQ~~aip~il----~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~ 159 (744)
+.|..++|.|.+.+..+. .|.++++.+|||+|||++.|.|+|..+... ....++++++.|..-..|..+.++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~----~~~~kIiy~sRThsQl~q~i~Elk 81 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK----PEVRKIIYASRTHSQLEQATEELR 81 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc----cccccEEEEcccchHHHHHHHHHH
Confidence 456677999998776544 578999999999999999999999865432 123679999999999999999998
Q ss_pred Hh
Q 004567 160 AV 161 (744)
Q Consensus 160 ~~ 161 (744)
++
T Consensus 82 ~~ 83 (705)
T TIGR00604 82 KL 83 (705)
T ss_pred hh
Confidence 85
No 154
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.40 E-value=2e-11 Score=143.95 Aligned_cols=125 Identities=19% Similarity=0.187 Sum_probs=98.7
Q ss_pred cChhhHHHHHHHHHHHh--CCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEc
Q 004567 293 VPLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT 369 (744)
Q Consensus 293 ~~~~~kl~~L~~lLk~~--~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaT 369 (744)
.....|..++..-+... .+.++||-+.|+...+.+...|... |++.-+|++... .+..-+-.-.. ...|-|||
T Consensus 608 ~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~--gI~H~VLNAK~h--~~EAeIVA~AG~~GaVTIAT 683 (1112)
T PRK12901 608 KTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMR--KIPHNVLNAKLH--QKEAEIVAEAGQPGTVTIAT 683 (1112)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHc--CCcHHHhhccch--hhHHHHHHhcCCCCcEEEec
Confidence 34456777777666543 4889999999999999999999985 888777777643 33333322233 67899999
Q ss_pred cccccccccCC--------CCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchH
Q 004567 370 DVASRGLDFNK--------AVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 422 (744)
Q Consensus 370 dv~arGlDi~p--------~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~ 422 (744)
++++||.|| . +==+||-...+.|..---|-.||+||.|.+|.+..|++-.+.
T Consensus 684 NMAGRGTDI-kLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 684 NMAGRGTDI-KLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred cCcCCCcCc-ccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 999999999 4 335799999999999999999999999999999999886654
No 155
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.38 E-value=2.5e-10 Score=126.43 Aligned_cols=290 Identities=16% Similarity=0.201 Sum_probs=199.6
Q ss_pred CCCceEEEEcCChHHHHHHHHHHHHhhcc-------------CCce-------EEEEEcCccChHHHH------------
Q 004567 136 EDGVGSIIISPTRELADQLFDVLKAVGKH-------------HNFS-------AGLLIGGRRDVDMEK------------ 183 (744)
Q Consensus 136 ~~g~~aLIl~PtreLa~Qi~~~l~~~~~~-------------~~~~-------~~~l~Gg~~~~~~e~------------ 183 (744)
...++||||+|+|..|.++.+.|..+... ++.. ...-....++..+..
T Consensus 35 ftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~Frl 114 (442)
T PF06862_consen 35 FTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRL 114 (442)
T ss_pred CCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEE
Confidence 34688999999999999999988776643 1100 000000001111100
Q ss_pred ------------HhcCCCcEEEEChHHHHHHHhcC----CCC-CCCCceEEEEcCchhhh--ccchHHHHHHHHHhCCC-
Q 004567 184 ------------EHVNELNILVCTPGRLLQHMDET----PNF-DCSQLQILILDEADRIL--DVGFKKALNAIVSQLPK- 243 (744)
Q Consensus 184 ------------~~~~~~~IlV~TPgrLl~~l~~~----~~~-~~~~l~~lVlDEAh~ll--d~gf~~~l~~Il~~lp~- 243 (744)
......+||||+|=-|...+... ..+ .++.+.++|+|-||.|+ +|.+-..+...+...|+
T Consensus 115 Gik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 115 GIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKK 194 (442)
T ss_pred eEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCC
Confidence 00124699999999998777641 112 27899999999999665 33333333334444443
Q ss_pred --------------------CCcEEEEeeccChhHHHHHHHhcCCCcc-ccccc-----cccccCccccceeEEEcChh-
Q 004567 244 --------------------HRQTFLFSATQTKSVQDLARLSLKDPQY-LSVHE-----ESVTATPNRLQQTAMIVPLE- 296 (744)
Q Consensus 244 --------------------~~q~ll~SAT~~~~v~~la~~~l~~p~~-i~v~~-----~~~~~~~~~l~q~~~~~~~~- 296 (744)
-+|+|+||+..++.+..+....+.|..- +.+.. .........+.|.+...+..
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 2799999999999999998886665432 11111 12234455677777765432
Q ss_pred ------hHHH----HHHHHHH-HhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCC
Q 004567 297 ------QKLD----MLWSFIK-AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRS 364 (744)
Q Consensus 297 ------~kl~----~L~~lLk-~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~ 364 (744)
.++. .++.-+. ....+.+|||++|.-.--.+.+.|++. ++..+.+|--.++.+-..+-..|.. ...
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~--~~sF~~i~EYts~~~isRAR~~F~~G~~~ 352 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKE--NISFVQISEYTSNSDISRARSQFFHGRKP 352 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhc--CCeEEEecccCCHHHHHHHHHHHHcCCce
Confidence 2222 2233333 445689999999999999999999864 8999999999999998888999999 889
Q ss_pred eEEEcccc--ccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCC------CCeEEEEeCcchHHHHHHH
Q 004567 365 VLFCTDVA--SRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNS------GGRSVLFLTPTEMKMLEKL 428 (744)
Q Consensus 365 VLVaTdv~--arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~------~G~~il~l~~~e~~~l~~l 428 (744)
||+.|--+ -+=..| .+|..||.|++|..+.-|-..++-.+.... ...|.++++.-+.-.|++|
T Consensus 353 iLL~TER~HFfrRy~i-rGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 353 ILLYTERFHFFRRYRI-RGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred EEEEEhHHhhhhhcee-cCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 99999643 556678 899999999999999999888876655433 5789999998888777766
No 156
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.31 E-value=5.8e-11 Score=132.61 Aligned_cols=102 Identities=16% Similarity=0.228 Sum_probs=93.7
Q ss_pred CCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc--cCCeEEEccccccccccCCCCcEEEEc
Q 004567 311 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE--KRSVLFCTDVASRGLDFNKAVDWVVQV 388 (744)
Q Consensus 311 ~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~--~~~VLVaTdv~arGlDi~p~V~~VI~~ 388 (744)
+.++|+|+...+....+.++|... ++..+.|.|..+..+|..++..|.. ...+|++|.+.+-|||+ .+.+.||+|
T Consensus 1044 gHRvL~yfQMTkM~dl~EdYl~yr--~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINL-TAADTViFY 1120 (1185)
T KOG0388|consen 1044 GHRVLMYFQMTKMIDLIEDYLVYR--GYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINL-TAADTVIFY 1120 (1185)
T ss_pred CceEEehhHHHHHHHHHHHHHHhh--ccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccc-cccceEEEe
Confidence 789999999999999999999775 8999999999999999999999998 45789999999999999 999999999
Q ss_pred CCCCCHhHHHHHhhccCcCCCCCeEEE
Q 004567 389 DCPEDVASYIHRVGRTARYNSGGRSVL 415 (744)
Q Consensus 389 d~P~s~~~yiQRiGRagR~g~~G~~il 415 (744)
|..|++..-.|...||.|.|+...+.+
T Consensus 1121 dSDWNPT~D~QAMDRAHRLGQTrdvtv 1147 (1185)
T KOG0388|consen 1121 DSDWNPTADQQAMDRAHRLGQTRDVTV 1147 (1185)
T ss_pred cCCCCcchhhHHHHHHHhccCccceee
Confidence 999999999999999999998655433
No 157
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.29 E-value=7.4e-11 Score=132.29 Aligned_cols=138 Identities=20% Similarity=0.262 Sum_probs=94.4
Q ss_pred CCcHHHHHHHHHHHcC-----CCEEEEccCCCchhHHhHHHHHHHHHhc----cCCCCCCceEEEEcCChHHHHHHHHHH
Q 004567 88 KMTDIQRASLPHSLCG-----RDILGAAKTGSGKTLAFVIPVLEKLYKE----RWGPEDGVGSIIISPTRELADQLFDVL 158 (744)
Q Consensus 88 ~~t~iQ~~aip~il~g-----~dvlv~a~TGSGKTla~llpil~~L~~~----~~~~~~g~~aLIl~PtreLa~Qi~~~l 158 (744)
.+.|+|..++.+++-. .-.|+....|-|||++.+..++..=... +-..... ..|||||- .|..||+..+
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~-~TLII~Pa-Sli~qW~~Ev 402 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESAS-KTLIICPA-SLIHQWEAEV 402 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccC-CeEEeCcH-HHHHHHHHHH
Confidence 4789999999888853 4588999999999997555555432221 1111122 48999997 4788999998
Q ss_pred HHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHH----HHhcCC---CCCCCCceEEEEcCchhhhcc
Q 004567 159 KAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQ----HMDETP---NFDCSQLQILILDEADRILDV 228 (744)
Q Consensus 159 ~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~----~l~~~~---~~~~~~l~~lVlDEAh~lld~ 228 (744)
.+-.....+++.+.+| ..........+..++|||+|+.-+.. -+.... .+.--.+..|||||||.+-+.
T Consensus 403 ~~rl~~n~LsV~~~HG-~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~ 478 (901)
T KOG4439|consen 403 ARRLEQNALSVYLYHG-PNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNS 478 (901)
T ss_pred HHHHhhcceEEEEecC-CccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhccc
Confidence 8877777788888888 43355556677899999999976654 111111 111123567999999966543
No 158
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.28 E-value=2.7e-10 Score=123.22 Aligned_cols=118 Identities=19% Similarity=0.162 Sum_probs=95.3
Q ss_pred CCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc--cCC-eEEEccccccccccCCCCcEEEE
Q 004567 311 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE--KRS-VLFCTDVASRGLDFNKAVDWVVQ 387 (744)
Q Consensus 311 ~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~--~~~-VLVaTdv~arGlDi~p~V~~VI~ 387 (744)
.-+.|||..-....+-+.-.|.+. |+.++.|-|+|++..|..+++.|.+ ++. +|++-.+.+..||+ ....+|..
T Consensus 638 t~KsIVFSQFTSmLDLi~~rL~ka--GfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNL-teASqVFm 714 (791)
T KOG1002|consen 638 TAKSIVFSQFTSMLDLIEWRLGKA--GFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNL-TEASQVFM 714 (791)
T ss_pred chhhhhHHHHHHHHHHHHHHhhcc--CceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeee-chhceeEe
Confidence 458899988888888888888775 9999999999999999999999999 554 46666888888999 88999999
Q ss_pred cCCCCCHhHHHHHhhccCcCCC--CCeEEEEeCcchH-HHHHHHHHc
Q 004567 388 VDCPEDVASYIHRVGRTARYNS--GGRSVLFLTPTEM-KMLEKLREA 431 (744)
Q Consensus 388 ~d~P~s~~~yiQRiGRagR~g~--~G~~il~l~~~e~-~~l~~l~~~ 431 (744)
+|+-|+++--+|.-.|..|.|+ +-.++-|+-.+.. ..+-.|.++
T Consensus 715 mDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeK 761 (791)
T KOG1002|consen 715 MDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEK 761 (791)
T ss_pred ecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHH
Confidence 9999999999999999999887 4556666655543 344444443
No 159
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.28 E-value=4.8e-10 Score=130.67 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=93.0
Q ss_pred CCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc---cCCeEEEccccccccccCCCCcEEEE
Q 004567 311 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE---KRSVLFCTDVASRGLDFNKAVDWVVQ 387 (744)
Q Consensus 311 ~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~---~~~VLVaTdv~arGlDi~p~V~~VI~ 387 (744)
+.++|||....+..+.+..+|+.. |+-.+.|.|...-++|+.++++|+. -.++|++|...+.|||+ .+.+.||+
T Consensus 1276 ghRvLIfTQMtkmLDVLeqFLnyH--gylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNL-tgADTVvF 1352 (1958)
T KOG0391|consen 1276 GHRVLIFTQMTKMLDVLEQFLNYH--GYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINL-TGADTVVF 1352 (1958)
T ss_pred CceEEehhHHHHHHHHHHHHHhhc--ceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcccccc-ccCceEEE
Confidence 679999999999999998888764 8899999999999999999999998 24678899999999999 99999999
Q ss_pred cCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchH
Q 004567 388 VDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 422 (744)
Q Consensus 388 ~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~ 422 (744)
||.-|++..-.|.-.|+.|.|+...+.++-.-++.
T Consensus 1353 YDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1353 YDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred ecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 99999998877777777777776666555444443
No 160
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.23 E-value=4.9e-10 Score=130.05 Aligned_cols=287 Identities=16% Similarity=0.217 Sum_probs=174.2
Q ss_pred EEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHh
Q 004567 106 ILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEH 185 (744)
Q Consensus 106 vlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~ 185 (744)
.++.||+|||||.+.+- -+...+. ..+.++|+|+..+.|+.++...++..+- .++....-.+ .... .
T Consensus 52 ~vVRSpMGTGKTtaLi~-wLk~~l~-----~~~~~VLvVShRrSL~~sL~~rf~~~~l-~gFv~Y~d~~-~~~i-----~ 118 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIR-WLKDALK-----NPDKSVLVVSHRRSLTKSLAERFKKAGL-SGFVNYLDSD-DYII-----D 118 (824)
T ss_pred EEEECCCCCCcHHHHHH-HHHHhcc-----CCCCeEEEEEhHHHHHHHHHHHHhhcCC-Ccceeeeccc-cccc-----c
Confidence 67899999999987433 3333221 2467899999999999999998876531 1232211111 1111 1
Q ss_pred cCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHH-------HHHhCCCCCcEEEEeeccChhH
Q 004567 186 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNA-------IVSQLPKHRQTFLFSATQTKSV 258 (744)
Q Consensus 186 ~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~-------Il~~lp~~~q~ll~SAT~~~~v 258 (744)
....+-++++.+.|.+... -.+.++++|||||+-.++..-|...+.. +...+.....+|++-||+....
T Consensus 119 ~~~~~rLivqIdSL~R~~~----~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~t 194 (824)
T PF02399_consen 119 GRPYDRLIVQIDSLHRLDG----SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQT 194 (824)
T ss_pred ccccCeEEEEehhhhhccc----ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHH
Confidence 1245677888888855432 1246789999999998877644443332 3344556678999999999998
Q ss_pred HHHHHHhcCCCccccccccccccC--------------------------------------ccccceeEEEcChhhHHH
Q 004567 259 QDLARLSLKDPQYLSVHEESVTAT--------------------------------------PNRLQQTAMIVPLEQKLD 300 (744)
Q Consensus 259 ~~la~~~l~~p~~i~v~~~~~~~~--------------------------------------~~~l~q~~~~~~~~~kl~ 300 (744)
-++......+..+..+.. ..... +..............-+.
T Consensus 195 vdFl~~~Rp~~~i~vI~n-~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~ 273 (824)
T PF02399_consen 195 VDFLASCRPDENIHVIVN-TYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFS 273 (824)
T ss_pred HHHHHHhCCCCcEEEEEe-eeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHH
Confidence 888776543322211111 00000 000000000011111112
Q ss_pred HHHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhccCCeEEEccccccccccCC
Q 004567 301 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFNK 380 (744)
Q Consensus 301 ~L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~~~~VLVaTdv~arGlDi~p 380 (744)
.|..-|. .+.++-||++|...++.+++..... +..+..++|..+.. .+ +.|. +.+|++-|.++..|++| .
T Consensus 274 ~L~~~L~--~gknIcvfsSt~~~~~~v~~~~~~~--~~~Vl~l~s~~~~~---dv-~~W~-~~~VviYT~~itvG~Sf-~ 343 (824)
T PF02399_consen 274 ELLARLN--AGKNICVFSSTVSFAEIVARFCARF--TKKVLVLNSTDKLE---DV-ESWK-KYDVVIYTPVITVGLSF-E 343 (824)
T ss_pred HHHHHHh--CCCcEEEEeChHHHHHHHHHHHHhc--CCeEEEEcCCCCcc---cc-cccc-ceeEEEEeceEEEEecc-c
Confidence 2222222 2678889999999999999888875 77888888877665 22 1122 68899999999999999 4
Q ss_pred CC--cEEEEcCCC----CCHhHHHHHhhccCcCCCCCeEEEEeCcch
Q 004567 381 AV--DWVVQVDCP----EDVASYIHRVGRTARYNSGGRSVLFLTPTE 421 (744)
Q Consensus 381 ~V--~~VI~~d~P----~s~~~yiQRiGRagR~g~~G~~il~l~~~e 421 (744)
.. +-|.-|=-| .+..+..|++||+-.. .....++++.+..
T Consensus 344 ~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~~ 389 (824)
T PF02399_consen 344 EKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDASG 389 (824)
T ss_pred hhhceEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEeccc
Confidence 43 223333112 2566789999999554 4567777776653
No 161
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.17 E-value=1.5e-09 Score=133.07 Aligned_cols=117 Identities=21% Similarity=0.288 Sum_probs=100.0
Q ss_pred hHHHHHHHHH-HH--hCCC--cEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc---cCCeEEE
Q 004567 297 QKLDMLWSFI-KA--HLNS--KILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE---KRSVLFC 368 (744)
Q Consensus 297 ~kl~~L~~lL-k~--~~~~--k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~---~~~VLVa 368 (744)
.|+..+..++ .. ..+. ++|||++......-+...+... ++..+.++|+++...|..++..|.. ...++++
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~--~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls 769 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKAL--GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLS 769 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhc--CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEE
Confidence 4566666666 22 2245 8999999999999999999886 5789999999999999999999998 3467778
Q ss_pred ccccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEE
Q 004567 369 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLF 416 (744)
Q Consensus 369 Tdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~ 416 (744)
|.+++.|+|+ ...++||+||+.|++....|...|+.|.|+...+.++
T Consensus 770 ~kagg~glnL-t~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 770 LKAGGLGLNL-TGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred ecccccceee-cccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 8999999999 8999999999999999999999999999987665554
No 162
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.09 E-value=3.1e-10 Score=121.16 Aligned_cols=155 Identities=19% Similarity=0.210 Sum_probs=93.6
Q ss_pred HHHHHHHHHHc-------------CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHH
Q 004567 92 IQRASLPHSLC-------------GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVL 158 (744)
Q Consensus 92 iQ~~aip~il~-------------g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l 158 (744)
+|.+++..++. .+.+|++..+|+|||+..+..+. .+..... ......+|||||. .+..||...+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~-~~~~~~~LIv~P~-~l~~~W~~E~ 77 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFP-QRGEKKTLIVVPS-SLLSQWKEEI 77 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCT-TSS-S-EEEEE-T-TTHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhccc-cccccceeEeecc-chhhhhhhhh
Confidence 58888877642 35699999999999998554443 3433211 1111249999999 8889999999
Q ss_pred HHhhccCCceEEEEEcCcc-ChHHHHHhcCCCcEEEEChHHHH-----HHHhcCCCCCCCCceEEEEcCchhhhccchHH
Q 004567 159 KAVGKHHNFSAGLLIGGRR-DVDMEKEHVNELNILVCTPGRLL-----QHMDETPNFDCSQLQILILDEADRILDVGFKK 232 (744)
Q Consensus 159 ~~~~~~~~~~~~~l~Gg~~-~~~~e~~~~~~~~IlV~TPgrLl-----~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~ 232 (744)
.+++....+.+..+.| .. ............+|+|+|++.+. .... .+...++++||+||+|.+-+.. .
T Consensus 78 ~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~---~l~~~~~~~vIvDEaH~~k~~~--s 151 (299)
T PF00176_consen 78 EKWFDPDSLRVIIYDG-DSERRRLSKNQLPKYDVVITTYETLRKARKKKDKE---DLKQIKWDRVIVDEAHRLKNKD--S 151 (299)
T ss_dssp HHHSGT-TS-EEEESS-SCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTH---HHHTSEEEEEEETTGGGGTTTT--S
T ss_pred cccccccccccccccc-ccccccccccccccceeeecccccccccccccccc---ccccccceeEEEeccccccccc--c
Confidence 9998654566655555 32 12222233457899999999998 1111 1222358999999999985432 3
Q ss_pred HHHHHHHhCCCCCcEEEEeeccCh
Q 004567 233 ALNAIVSQLPKHRQTFLFSATQTK 256 (744)
Q Consensus 233 ~l~~Il~~lp~~~q~ll~SAT~~~ 256 (744)
.....+..+. ....+++|||+-.
T Consensus 152 ~~~~~l~~l~-~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 152 KRYKALRKLR-ARYRWLLSGTPIQ 174 (299)
T ss_dssp HHHHHHHCCC-ECEEEEE-SS-SS
T ss_pred cccccccccc-cceEEeecccccc
Confidence 3333444454 6678999999543
No 163
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=5.3e-09 Score=114.49 Aligned_cols=338 Identities=22% Similarity=0.256 Sum_probs=210.7
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcc-CCCch--hHHhHHHHHHHHHhcc------------------------CCCCCCc
Q 004567 87 VKMTDIQRASLPHSLCGRDILGAAK-TGSGK--TLAFVIPVLEKLYKER------------------------WGPEDGV 139 (744)
Q Consensus 87 ~~~t~iQ~~aip~il~g~dvlv~a~-TGSGK--Tla~llpil~~L~~~~------------------------~~~~~g~ 139 (744)
..+|+.|.+.+..+.+.+|++..-. .|.|+ +-.|.+-+|+++++.+ -.....+
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 4699999999999999999875322 24455 5568899999987531 0012357
Q ss_pred eEEEEcCChHHHHHHHHHHHHhhccCCc-----e-E-------------------------EEEEcCccC-----hHHHH
Q 004567 140 GSIIISPTRELADQLFDVLKAVGKHHNF-----S-A-------------------------GLLIGGRRD-----VDMEK 183 (744)
Q Consensus 140 ~aLIl~PtreLa~Qi~~~l~~~~~~~~~-----~-~-------------------------~~l~Gg~~~-----~~~e~ 183 (744)
+||||||+|+-|..+...|..+.....- . - .++.|+..+ +..-.
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 8999999999999988888776321100 0 0 012221111 01111
Q ss_pred H------hcCCCcEEEEChHHHHHHHhcCC----CCC-CCCceEEEEcCchhhhccchHHHHHHHHHhC---CC------
Q 004567 184 E------HVNELNILVCTPGRLLQHMDETP----NFD-CSQLQILILDEADRILDVGFKKALNAIVSQL---PK------ 243 (744)
Q Consensus 184 ~------~~~~~~IlV~TPgrLl~~l~~~~----~~~-~~~l~~lVlDEAh~lld~gf~~~l~~Il~~l---p~------ 243 (744)
. .+...+||||+|--|.-.+.+.. .++ ++.+.++|||-||-++-.+ ...+..|+.++ |.
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN-wEhl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN-WEHLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh-HHHHHHHHHHhhcCcccccCCC
Confidence 1 12357999999988866665321 222 6889999999999777544 44555555554 32
Q ss_pred ---------------CCcEEEEeeccChhHHHHHHHhcCCCccc-c---cc-ccccccCccccceeEE-------EcChh
Q 004567 244 ---------------HRQTFLFSATQTKSVQDLARLSLKDPQYL-S---VH-EESVTATPNRLQQTAM-------IVPLE 296 (744)
Q Consensus 244 ---------------~~q~ll~SAT~~~~v~~la~~~l~~p~~i-~---v~-~~~~~~~~~~l~q~~~-------~~~~~ 296 (744)
-+|+++||+-..+....+...++.+-.-. . +. .+........+.|.+. ....+
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D 533 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPD 533 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCch
Confidence 25999999998887777766665542211 1 10 0111111112222221 12223
Q ss_pred hHHHHHHHHHHH----hCCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccc
Q 004567 297 QKLDMLWSFIKA----HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 371 (744)
Q Consensus 297 ~kl~~L~~lLk~----~~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv 371 (744)
.++.....-|-- .....+||+.++.-.--++...|++. ++....+|--.+...-..+-+.|-. ...||+-|--
T Consensus 534 ~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e--~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER 611 (698)
T KOG2340|consen 534 ARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKE--EISFVMINEYSSKSKVSRARELFFQGRKSVLLYTER 611 (698)
T ss_pred HHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhh--hcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehh
Confidence 344333332221 12467899999999988999999885 5666666654444444555566766 7788888865
Q ss_pred c--ccccccCCCCcEEEEcCCCCCHhHH---HHHhhccCcCCC----CCeEEEEeCcchHHHHHHH
Q 004567 372 A--SRGLDFNKAVDWVVQVDCPEDVASY---IHRVGRTARYNS----GGRSVLFLTPTEMKMLEKL 428 (744)
Q Consensus 372 ~--arGlDi~p~V~~VI~~d~P~s~~~y---iQRiGRagR~g~----~G~~il~l~~~e~~~l~~l 428 (744)
+ -|-.+| .+|..||+|.+|..+.-| +.+.||+.-.|+ .-.|.++++.-+.-.|+.+
T Consensus 612 ~hffrR~~i-kGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 612 AHFFRRYHI-KGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENI 676 (698)
T ss_pred hhhhhhhee-cceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHh
Confidence 4 677889 899999999999988655 667777655443 2467788887776555544
No 164
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.04 E-value=7.1e-10 Score=104.12 Aligned_cols=134 Identities=18% Similarity=0.257 Sum_probs=79.7
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHH
Q 004567 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDME 182 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e 182 (744)
|+--++-..+|+|||.-.+.-++..-+. .+.++|||.|||.++..+.+.++.. ++.+..... .
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~------~~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~~~------~- 66 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK------RRLRVLVLAPTRVVAEEMYEALKGL----PVRFHTNAR------M- 66 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH------TT--EEEEESSHHHHHHHHHHTTTS----SEEEESTTS------S-
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH------ccCeEEEecccHHHHHHHHHHHhcC----CcccCceee------e-
Confidence 4446788999999999765555554433 3688999999999999888777543 222211100 0
Q ss_pred HHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccc---hHHHHHHHHHhCCCCCcEEEEeeccChhH
Q 004567 183 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG---FKKALNAIVSQLPKHRQTFLFSATQTKSV 258 (744)
Q Consensus 183 ~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~g---f~~~l~~Il~~lp~~~q~ll~SAT~~~~v 258 (744)
....++..|-|+|.+.+.+.+.+. ....++++||+||||-. |.. +...+... ... ....+|++|||+|...
T Consensus 67 ~~~~g~~~i~vMc~at~~~~~~~p--~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~-~~~-g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 67 RTHFGSSIIDVMCHATYGHFLLNP--CRLKNYDVIIMDECHFT-DPTSIAARGYLREL-AES-GEAKVIFMTATPPGSE 140 (148)
T ss_dssp ----SSSSEEEEEHHHHHHHHHTS--SCTTS-SEEEECTTT---SHHHHHHHHHHHHH-HHT-TS-EEEEEESS-TT--
T ss_pred ccccCCCcccccccHHHHHHhcCc--ccccCccEEEEeccccC-CHHHHhhheeHHHh-hhc-cCeeEEEEeCCCCCCC
Confidence 122356778899999988877663 34589999999999953 322 22222222 222 2357999999998654
No 165
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.03 E-value=1.9e-08 Score=115.82 Aligned_cols=121 Identities=18% Similarity=0.258 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHHh--CCCcEEEEecchHHHHHHHHHHHhhC--------------------CCCcEEEeeCCCCHHHHHH
Q 004567 297 QKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLR--------------------PGIPLMCLYGRMKQDRRMA 354 (744)
Q Consensus 297 ~kl~~L~~lLk~~--~~~k~IVF~~s~~~v~~l~~~L~~l~--------------------~g~~v~~lhg~~~~~~R~~ 354 (744)
.|+-.|+.+|+.. .+.++|||..|......|..+|.... .|..-+.|.|..+...|..
T Consensus 1126 gKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k 1205 (1567)
T KOG1015|consen 1126 GKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKK 1205 (1567)
T ss_pred cceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHH
Confidence 3556677777643 48999999999999988888876531 3556788999999999999
Q ss_pred HHHHHhc--c---CCeEEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeC
Q 004567 355 IYAQFCE--K---RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 418 (744)
Q Consensus 355 i~~~F~~--~---~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~ 418 (744)
....|.+ + ..+||+|.+.+-|||+ -+.+.||.||..|++.--+|-+=|+.|+|+.--++++-.
T Consensus 1206 ~~~~FNdp~NlRaRl~LISTRAGsLGiNL-vAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRf 1273 (1567)
T KOG1015|consen 1206 WAEEFNDPTNLRARLFLISTRAGSLGINL-VAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRF 1273 (1567)
T ss_pred HHHHhcCcccceeEEEEEeeccCccccce-eecceEEEEecccCCccchHHHHHHHhhcCcCceeehhh
Confidence 9999988 3 3589999999999999 889999999999999999999999999999877777643
No 166
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.01 E-value=3.2e-08 Score=121.14 Aligned_cols=313 Identities=19% Similarity=0.160 Sum_probs=174.6
Q ss_pred CCcHHHHHHHHHHHc--------------CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHH
Q 004567 88 KMTDIQRASLPHSLC--------------GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQ 153 (744)
Q Consensus 88 ~~t~iQ~~aip~il~--------------g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Q 153 (744)
...++|+.+...+.. ++..++.=-||||||++. +.+...+... ...+.+++|+-.++|-.|
T Consensus 244 ~~k~~~~~~q~~av~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTlTm-~~~A~~l~~~----~~~~~v~fvvDR~dLd~Q 318 (962)
T COG0610 244 VKKKYQRYAQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTM-FKLARLLLEL----PKNPKVLFVVDRKDLDDQ 318 (962)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhccCCCcCCceEEEeecCCchHHHH-HHHHHHHHhc----cCCCeEEEEechHHHHHH
Confidence 456666665554442 245899999999999973 3444444443 457889999999999999
Q ss_pred HHHHHHHhhccCCceEEEEEcCccChHHHHHhcC--CCcEEEEChHHHHHHHhcCCCCCCC-CceEEEEcCchhhhccch
Q 004567 154 LFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVN--ELNILVCTPGRLLQHMDETPNFDCS-QLQILILDEADRILDVGF 230 (744)
Q Consensus 154 i~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~--~~~IlV~TPgrLl~~l~~~~~~~~~-~l~~lVlDEAh~lld~gf 230 (744)
+.+.+..++....... . ..+...-...+. .-.|+|+|-+.|-..+.......+. .=-+||+|||||-- +
T Consensus 319 ~~~~f~~~~~~~~~~~----~-~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~ 390 (962)
T COG0610 319 TSDEFQSFGKVAFNDP----K-AESTSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---Y 390 (962)
T ss_pred HHHHHHHHHHhhhhcc----c-ccCHHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---c
Confidence 9999999875433322 1 222333333332 4589999999998877664111122 22368889999843 2
Q ss_pred HHHHHHHHHhCCCCCcEEEEeeccChhHHHH-HHHhcCCCccccccccccccCccccceeEEEc-Ch-------------
Q 004567 231 KKALNAIVSQLPKHRQTFLFSATQTKSVQDL-ARLSLKDPQYLSVHEESVTATPNRLQQTAMIV-PL------------- 295 (744)
Q Consensus 231 ~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~l-a~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~-~~------------- 295 (744)
+..-..+...+++ ...++||+|+--.-..- ....+.++...-...... .....+...|... ..
T Consensus 391 G~~~~~~~~~~~~-a~~~gFTGTPi~~~d~~tt~~~fg~ylh~Y~i~daI-~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~ 468 (962)
T COG0610 391 GELAKLLKKALKK-AIFIGFTGTPIFKEDKDTTKDVFGDYLHTYTITDAI-RDGAVLPVYYENRVELELIEESIKEEAEE 468 (962)
T ss_pred cHHHHHHHHHhcc-ceEEEeeCCccccccccchhhhhcceeEEEecchhh-ccCceeeEEEeecccccccccchhhhhhh
Confidence 3333333444543 77999999964322111 111111111110000000 0000001111100 00
Q ss_pred -----------------------------hhHH----HHHHH-HHH-HhCCCcEEEEecchHHHHHHHHHHHhhCCC---
Q 004567 296 -----------------------------EQKL----DMLWS-FIK-AHLNSKILVFLTSCKQVKYVFEAFKKLRPG--- 337 (744)
Q Consensus 296 -----------------------------~~kl----~~L~~-lLk-~~~~~k~IVF~~s~~~v~~l~~~L~~l~~g--- 337 (744)
..++ ..++. +.. .....+++|.|+++..+..+++.+....+.
T Consensus 469 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~ 548 (962)
T COG0610 469 LDERIEEITEDILEKIKKKTKNLEFLAMLAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHS 548 (962)
T ss_pred hHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhh
Confidence 0000 01111 111 122567888888888555555554433210
Q ss_pred --------------C----cEEEeeCCCCHHHHHHHHHHH-hc--cCCeEEEccccccccccCCCCcEEEEcCCCCCHhH
Q 004567 338 --------------I----PLMCLYGRMKQDRRMAIYAQF-CE--KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVAS 396 (744)
Q Consensus 338 --------------~----~v~~lhg~~~~~~R~~i~~~F-~~--~~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~ 396 (744)
+ .....|... ...+.....+| .. ...+||.+|++-.|.|- | +-+++.+|-|.-.-.
T Consensus 549 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDa-P-~L~TmYvDK~Lk~H~ 625 (962)
T COG0610 549 KESLEGAIKDYNTEFETDFDKKQSHAKL-KDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDA-P-CLNTLYVDKPLKYHN 625 (962)
T ss_pred hhhhhhHHHHHHhhcccchhhhhhhHHH-HHHHhhhhhhhcCcCCCCCEEEEEccccccCCc-c-ccceEEeccccccch
Confidence 0 000012222 22233344443 33 67999999999999999 8 788889999999999
Q ss_pred HHHHhhccCcCCC----CCeEEEEeC
Q 004567 397 YIHRVGRTARYNS----GGRSVLFLT 418 (744)
Q Consensus 397 yiQRiGRagR~g~----~G~~il~l~ 418 (744)
.+|.+-||.|.-. .|..+-|..
T Consensus 626 L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 626 LIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred HHHHHHHhccCCCCCCCCcEEEECcc
Confidence 9999999999632 355555554
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.01 E-value=3.5e-09 Score=113.16 Aligned_cols=75 Identities=20% Similarity=0.111 Sum_probs=58.4
Q ss_pred CCCCCcHHHHH----HHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHH
Q 004567 85 GFVKMTDIQRA----SLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKA 160 (744)
Q Consensus 85 gf~~~t~iQ~~----aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~ 160 (744)
.| .|+|.|.+ ++..+..|.++++.||||+|||++|++|++..+...... ..+.+++|+++|..+..|....+++
T Consensus 6 Py-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 6 PY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-IQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-ccccceeEEeccHHHHHHHHHHHHh
Confidence 44 46999999 445566789999999999999999999999776543211 0234799999999999988877776
Q ss_pred h
Q 004567 161 V 161 (744)
Q Consensus 161 ~ 161 (744)
+
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 5
No 168
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.01 E-value=3.5e-09 Score=113.16 Aligned_cols=75 Identities=20% Similarity=0.111 Sum_probs=58.4
Q ss_pred CCCCCcHHHHH----HHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHH
Q 004567 85 GFVKMTDIQRA----SLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKA 160 (744)
Q Consensus 85 gf~~~t~iQ~~----aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~ 160 (744)
.| .|+|.|.+ ++..+..|.++++.||||+|||++|++|++..+...... ..+.+++|+++|..+..|....+++
T Consensus 6 Py-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 6 PY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-IQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-ccccceeEEeccHHHHHHHHHHHHh
Confidence 44 46999999 445566789999999999999999999999776543211 0234799999999999988877776
Q ss_pred h
Q 004567 161 V 161 (744)
Q Consensus 161 ~ 161 (744)
+
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 5
No 169
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.89 E-value=4.7e-08 Score=114.53 Aligned_cols=321 Identities=21% Similarity=0.259 Sum_probs=197.9
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhcc
Q 004567 85 GFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKH 164 (744)
Q Consensus 85 gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~ 164 (744)
|+ .+..+|.-. .+.-...-++-..||-||||+..+|+.-.- -.|.++.+++..--||.--.+.+..+...
T Consensus 78 g~-~~~dVQliG--~i~lh~g~iaEM~TGEGKTL~atlp~ylna-------L~gkgVhvVTvNdYLA~RDae~m~~l~~~ 147 (822)
T COG0653 78 GM-RHFDVQLLG--GIVLHLGDIAEMRTGEGKTLVATLPAYLNA-------LAGKGVHVVTVNDYLARRDAEWMGPLYEF 147 (822)
T ss_pred CC-ChhhHHHhh--hhhhcCCceeeeecCCchHHHHHHHHHHHh-------cCCCCcEEeeehHHhhhhCHHHHHHHHHH
Confidence 44 455566444 344445578899999999999999885432 35788999999999998888888888899
Q ss_pred CCceEEEEEcCccChHHHHHhcCCCcEEEEChHHH-HHHHhcC-----CCCCCCCceEEEEcCchhhh-cc---------
Q 004567 165 HNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRL-LQHMDET-----PNFDCSQLQILILDEADRIL-DV--------- 228 (744)
Q Consensus 165 ~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrL-l~~l~~~-----~~~~~~~l~~lVlDEAh~ll-d~--------- 228 (744)
+++++|+...+. ...+....-.++|.++|-..| .+.++.+ .......+.+.|+||+|.|+ |.
T Consensus 148 LGlsvG~~~~~m--~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG 225 (822)
T COG0653 148 LGLSVGVILAGM--SPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISG 225 (822)
T ss_pred cCCceeeccCCC--ChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeec
Confidence 999999998833 333445556799999998765 1222111 01123567889999999553 11
Q ss_pred ------chHHHHHHHHHhCCCCC--------cEEEEeec-cC-----------------hhHH---H---HHHHhcCCCc
Q 004567 229 ------GFKKALNAIVSQLPKHR--------QTFLFSAT-QT-----------------KSVQ---D---LARLSLKDPQ 270 (744)
Q Consensus 229 ------gf~~~l~~Il~~lp~~~--------q~ll~SAT-~~-----------------~~v~---~---la~~~l~~p~ 270 (744)
..+..+..++..+.... +.+.++-. +. ..+. . .-.++.++-.
T Consensus 226 ~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~d 305 (822)
T COG0653 226 PAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVD 305 (822)
T ss_pred ccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCe
Confidence 13455555554442211 11111110 00 0000 0 0011222222
Q ss_pred cccccc------------------------------------c--------------------cc----------ccCcc
Q 004567 271 YLSVHE------------------------------------E--------------------SV----------TATPN 284 (744)
Q Consensus 271 ~i~v~~------------------------------------~--------------------~~----------~~~~~ 284 (744)
|+.-.. + .. ....-
T Consensus 306 YIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY 385 (822)
T COG0653 306 YIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIY 385 (822)
T ss_pred eEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhcc
Confidence 221000 0 00 00000
Q ss_pred cccee---------------EEEcChhhHHHHHHHHHHH-h-CCCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCC
Q 004567 285 RLQQT---------------AMIVPLEQKLDMLWSFIKA-H-LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRM 347 (744)
Q Consensus 285 ~l~q~---------------~~~~~~~~kl~~L~~lLk~-~-~~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~ 347 (744)
++... .+......|..++...++. | .+.++||-..+....+.+...|.+. |++-..|...-
T Consensus 386 ~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~--~i~h~VLNAk~ 463 (822)
T COG0653 386 GLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKA--GIPHNVLNAKN 463 (822)
T ss_pred CCceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhc--CCCceeecccc
Confidence 01111 1122334577777766654 2 3889999999999999999999975 88877776654
Q ss_pred CHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCc----------EEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEE
Q 004567 348 KQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVD----------WVVQVDCPEDVASYIHRVGRTARYNSGGRSVLF 416 (744)
Q Consensus 348 ~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~----------~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~ 416 (744)
. .|..-+-.+.. ...|-|||++++||-||.-+-. +||-...-.|..---|--||+||.|-+|.+..|
T Consensus 464 h--~~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~ 541 (822)
T COG0653 464 H--AREAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFY 541 (822)
T ss_pred H--HHHHHHHhhcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhh
Confidence 3 55555555555 6789999999999999822222 355555556666666999999999999998888
Q ss_pred eCcch
Q 004567 417 LTPTE 421 (744)
Q Consensus 417 l~~~e 421 (744)
++-.+
T Consensus 542 lSleD 546 (822)
T COG0653 542 LSLED 546 (822)
T ss_pred hhhHH
Confidence 76554
No 170
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.80 E-value=1.9e-07 Score=105.83 Aligned_cols=110 Identities=19% Similarity=0.242 Sum_probs=91.5
Q ss_pred CCcEEEEecchHHHHHHHHHHHhhC----C------------CCcEEEeeCCCCHHHHHHHHHHHhc--cC--CeEEEcc
Q 004567 311 NSKILVFLTSCKQVKYVFEAFKKLR----P------------GIPLMCLYGRMKQDRRMAIYAQFCE--KR--SVLFCTD 370 (744)
Q Consensus 311 ~~k~IVF~~s~~~v~~l~~~L~~l~----~------------g~~v~~lhg~~~~~~R~~i~~~F~~--~~--~VLVaTd 370 (744)
+.++|||.++......+.+.|.+.. + ...-+.+.|..+..+|..++++|.. .. -+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 4589999999888888888887752 1 2335578899999999999999988 33 5788999
Q ss_pred ccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcch
Q 004567 371 VASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 421 (744)
Q Consensus 371 v~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e 421 (744)
...-|||+ =+.+-+|.||+-|++.--.|.+-|+-|+|+...|+++-.--+
T Consensus 799 ag~lGinL-Isanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD 848 (1387)
T KOG1016|consen 799 AGSLGINL-ISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMD 848 (1387)
T ss_pred ccccccee-eccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhh
Confidence 99999999 678889999999999999999999999999988888754433
No 171
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.76 E-value=1.1e-07 Score=109.52 Aligned_cols=303 Identities=17% Similarity=0.243 Sum_probs=179.6
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHH-hhccCCceEEEEEcCccChH
Q 004567 102 CGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKA-VGKHHNFSAGLLIGGRRDVD 180 (744)
Q Consensus 102 ~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~-~~~~~~~~~~~l~Gg~~~~~ 180 (744)
.+.-+++-+.||+|||..+.-.+|+.+..+.... -..+.+.-|+|-.+.-+.+.+.. -+.. ++-.+| +++.
T Consensus 392 dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~--~~na~v~qprrisaisiaerva~er~e~----~g~tvg--y~vR 463 (1282)
T KOG0921|consen 392 ENRVVIIKGETGCGKSTQVAQFLLESFLENSNGA--SFNAVVSQPRRISAISLAERVANERGEE----VGETCG--YNVR 463 (1282)
T ss_pred cCceeeEeecccccchhHHHHHHHHHHhhccccc--cccceeccccccchHHHHHHHHHhhHHh----hccccc--cccc
Confidence 3455789999999999999999999987764322 23467777998888776655432 2222 222222 3333
Q ss_pred HHHHhcC-CCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhh-hccchHHHHHHHHHhCCCCCcEEEEeeccChhH
Q 004567 181 MEKEHVN-ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRI-LDVGFKKALNAIVSQLPKHRQTFLFSATQTKSV 258 (744)
Q Consensus 181 ~e~~~~~-~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~l-ld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v 258 (744)
.+..... .--|+.||-|-++..+... +..+.++|+||.|.- .+..|...+.+-+.-..+...++++|||+....
T Consensus 464 f~Sa~prpyg~i~fctvgvllr~~e~g----lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatIdTd~ 539 (1282)
T KOG0921|consen 464 FDSATPRPYGSIMFCTVGVLLRMMENG----LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATIDTDL 539 (1282)
T ss_pred ccccccccccceeeeccchhhhhhhhc----ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccchhh
Confidence 3333332 2468999999999988765 357789999999943 234455444443333334445566666654321
Q ss_pred --------------------HHHHHHhcCCCcccccccccc----------ccCccc--cceeEEEcCh-----------
Q 004567 259 --------------------QDLARLSLKDPQYLSVHEESV----------TATPNR--LQQTAMIVPL----------- 295 (744)
Q Consensus 259 --------------------~~la~~~l~~p~~i~v~~~~~----------~~~~~~--l~q~~~~~~~----------- 295 (744)
..+....+..+. +.+..... ...+.. -...-..+..
T Consensus 540 f~~~f~~~p~~~~~grt~pvq~F~led~~~~~-~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~ 618 (1282)
T KOG0921|consen 540 FTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMT-QFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMS 618 (1282)
T ss_pred hhhhhccccceeeccccccHHHHHHHHhhhhh-hccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhh
Confidence 111111100000 00000000 000000 0000000000
Q ss_pred ----h----hHHHHHHHHHHH-hCCCcEEEEecchHHHHHHHHHHHhh-----CCCCcEEEeeCCCCHHHHHHHHHHHhc
Q 004567 296 ----E----QKLDMLWSFIKA-HLNSKILVFLTSCKQVKYVFEAFKKL-----RPGIPLMCLYGRMKQDRRMAIYAQFCE 361 (744)
Q Consensus 296 ----~----~kl~~L~~lLk~-~~~~k~IVF~~s~~~v~~l~~~L~~l-----~~g~~v~~lhg~~~~~~R~~i~~~F~~ 361 (744)
. .-.+.+..++.. ...+-++||.+.-...-+++..+... ...++++.+|+.+.......+++....
T Consensus 619 ~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~ 698 (1282)
T KOG0921|consen 619 RLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPE 698 (1282)
T ss_pred cchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccc
Confidence 0 011222333322 23677899999888877777665442 134678889999988888888888877
Q ss_pred -cCCeEEEccccccccccCCCCcEEEEcCCC------------------CCHhHHHHHhhccCcCCCCCeEEEEeCc
Q 004567 362 -KRSVLFCTDVASRGLDFNKAVDWVVQVDCP------------------EDVASYIHRVGRTARYNSGGRSVLFLTP 419 (744)
Q Consensus 362 -~~~VLVaTdv~arGlDi~p~V~~VI~~d~P------------------~s~~~yiQRiGRagR~g~~G~~il~l~~ 419 (744)
...++++|+++...+.+ .++.+||..+.- .+....+||-||+||. +.|.|..+...
T Consensus 699 gv~kii~stniaetsiTi-dd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 699 GVTKIILSTNIAETSITI-DDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSR 773 (1282)
T ss_pred cccccccccceeeEeeee-cceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHH
Confidence 78999999999999999 777787764431 2556789999999997 67777776543
No 172
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.68 E-value=1.9e-07 Score=97.87 Aligned_cols=132 Identities=23% Similarity=0.288 Sum_probs=96.0
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhh
Q 004567 83 DAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162 (744)
Q Consensus 83 ~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~ 162 (744)
..|+ .|++.|.-++-.+..|+ |+...||-|||++..+|+.-.. -.|..|-||+....||..=++.+..+.
T Consensus 73 ~~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~A-------L~G~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 73 TLGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNA-------LQGKGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp HTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHH-------TTSS-EEEEESSHHHHHHHHHHHHHHH
T ss_pred HcCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHH-------HhcCCcEEEeccHHHhhccHHHHHHHH
Confidence 3565 89999999997777666 9999999999999877776544 357889999999999999999999999
Q ss_pred ccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHH-HHHhcC----CCC-CCCCceEEEEcCchhhh
Q 004567 163 KHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLL-QHMDET----PNF-DCSQLQILILDEADRIL 226 (744)
Q Consensus 163 ~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl-~~l~~~----~~~-~~~~l~~lVlDEAh~ll 226 (744)
..++++++++++ ..+. .+....-.++|++||...|. +.|+.. ... ..+.+.++||||+|.++
T Consensus 143 ~~LGlsv~~~~~-~~~~-~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 143 EFLGLSVGIITS-DMSS-EERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHTT--EEEEET-TTEH-HHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHhhhccccCcc-ccCH-HHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999999998 3333 22333446789999999864 333332 111 14688999999999766
No 173
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.51 E-value=2.8e-08 Score=116.39 Aligned_cols=232 Identities=20% Similarity=0.207 Sum_probs=139.4
Q ss_pred CCcHHHHHHHHHHHc-CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCC
Q 004567 88 KMTDIQRASLPHSLC-GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHN 166 (744)
Q Consensus 88 ~~t~iQ~~aip~il~-g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~ 166 (744)
...|+|...+--+.. ..++++-+|||+|||++|.+.++..++.. .+.++++|+|-.+|+..-.+.+.......+
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~-----p~~kvvyIap~kalvker~~Dw~~r~~~~g 1001 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYY-----PGSKVVYIAPDKALVKERSDDWSKRDELPG 1001 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccC-----CCccEEEEcCCchhhcccccchhhhcccCC
Confidence 344455544422221 35688899999999999999888776543 568899999999999877777766554457
Q ss_pred ceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCC-CCCceEEEEcCchhhhccchHHHHHHHHH------
Q 004567 167 FSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFD-CSQLQILILDEADRILDVGFKKALNAIVS------ 239 (744)
Q Consensus 167 ~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~-~~~l~~lVlDEAh~lld~gf~~~l~~Il~------ 239 (744)
++++-+.|.... +.......+|+|+||+++..+.+.+.... +.++..+|+||.|.+.+ +.++.+..|..
T Consensus 1002 ~k~ie~tgd~~p---d~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~-~rgPVle~ivsr~n~~s 1077 (1230)
T KOG0952|consen 1002 IKVIELTGDVTP---DVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVSRMNYIS 1077 (1230)
T ss_pred ceeEeccCccCC---ChhheecCceEEcccccccCccccccchhhhccccceeecccccccC-CCcceEEEEeeccccCc
Confidence 888888873322 24556788999999999988877543332 57889999999996554 44444444433
Q ss_pred -hCCCCCcEEEEeeccChhHHHHHHHhcCCCccccccccccccCccccceeE------EEcChhh-HHHHHHHHHHHhC-
Q 004567 240 -QLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTA------MIVPLEQ-KLDMLWSFIKAHL- 310 (744)
Q Consensus 240 -~lp~~~q~ll~SAT~~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~------~~~~~~~-kl~~L~~lLk~~~- 310 (744)
+.+..++.+++|--+.+ ..+++.+.--.+.| ... ....|..+..++ ..|+... +....+..++.+.
T Consensus 1078 ~~t~~~vr~~glsta~~n-a~dla~wl~~~~~~-nf~---~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp 1152 (1230)
T KOG0952|consen 1078 SQTEEPVRYLGLSTALAN-ANDLADWLNIKDMY-NFR---PSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSP 1152 (1230)
T ss_pred cccCcchhhhhHhhhhhc-cHHHHHHhCCCCcC-CCC---cccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCC
Confidence 23344566665544333 33444332222221 100 001111111111 1122211 1223444555554
Q ss_pred CCcEEEEecchHHHHHHHHHHHh
Q 004567 311 NSKILVFLTSCKQVKYVFEAFKK 333 (744)
Q Consensus 311 ~~k~IVF~~s~~~v~~l~~~L~~ 333 (744)
..++|||++++.+...-+..|-.
T Consensus 1153 ~~p~lifv~srrqtrlta~~li~ 1175 (1230)
T KOG0952|consen 1153 IKPVLIFVSSRRQTRLTALDLIA 1175 (1230)
T ss_pred CCceEEEeecccccccchHhHHh
Confidence 78999999999887665554433
No 174
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.31 E-value=5.4e-06 Score=99.61 Aligned_cols=69 Identities=22% Similarity=0.248 Sum_probs=54.2
Q ss_pred cCCeEEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcCC--CCC-----e---EEEEeCcchHHHHHHHHHc
Q 004567 362 KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYN--SGG-----R---SVLFLTPTEMKMLEKLREA 431 (744)
Q Consensus 362 ~~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~g--~~G-----~---~il~l~~~e~~~l~~l~~~ 431 (744)
..+.||+-+++..|+|. |+|-.++-+....|...-.|-+||.-|.- +.| . -.++++.++..|...|...
T Consensus 501 ~~~fifs~~al~egwd~-~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~E 579 (986)
T PRK15483 501 TRRFLFSKWTLREGWDN-PNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGE 579 (986)
T ss_pred CeEEEEEhHHhhhcCCC-CCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHH
Confidence 45799999999999999 99988888988889999999999998852 112 1 2244566777888888664
No 175
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.16 E-value=8.5e-06 Score=83.29 Aligned_cols=72 Identities=22% Similarity=0.454 Sum_probs=51.5
Q ss_pred CCcHHHHHHHHHHHcCCC-EEEEccCCCchhHHhHHHHHHHHHhc--cCCCCCCceEEEEcCChHHHHHHHHHHHH
Q 004567 88 KMTDIQRASLPHSLCGRD-ILGAAKTGSGKTLAFVIPVLEKLYKE--RWGPEDGVGSIIISPTRELADQLFDVLKA 160 (744)
Q Consensus 88 ~~t~iQ~~aip~il~g~d-vlv~a~TGSGKTla~llpil~~L~~~--~~~~~~g~~aLIl~PtreLa~Qi~~~l~~ 160 (744)
++++.|..|+..++.... .++.||.|||||.+ +..++..++.. ......+..+||++||..-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHH-HHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHH-HHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 368899999999999988 99999999999965 44455554221 01124578899999999999998888877
No 176
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.11 E-value=1.7e-05 Score=80.06 Aligned_cols=124 Identities=21% Similarity=0.267 Sum_probs=71.1
Q ss_pred CCcHHHHHHHHHHHcCCC--EEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccC
Q 004567 88 KMTDIQRASLPHSLCGRD--ILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH 165 (744)
Q Consensus 88 ~~t~iQ~~aip~il~g~d--vlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~ 165 (744)
++++-|.+++..++.+.+ +++.|+.|+|||.+ +..+...+ .. .|..+++++||...+..+.+.+
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~-~~-----~g~~v~~~apT~~Aa~~L~~~~------- 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEAL-EA-----AGKRVIGLAPTNKAAKELREKT------- 66 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHH-HH-----TT--EEEEESSHHHHHHHHHHH-------
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHH-Hh-----CCCeEEEECCcHHHHHHHHHhh-------
Confidence 478999999999986543 77889999999975 34444443 32 3688999999998887544431
Q ss_pred CceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCC---CCCCCCceEEEEcCchhhhccchHHHHHHHHHhCC
Q 004567 166 NFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETP---NFDCSQLQILILDEADRILDVGFKKALNAIVSQLP 242 (744)
Q Consensus 166 ~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~---~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp 242 (744)
++. ..|-.+++....... ...+....+||||||-++. ...+..++...+
T Consensus 67 ~~~------------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~~ 118 (196)
T PF13604_consen 67 GIE------------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLAK 118 (196)
T ss_dssp TS-------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS-
T ss_pred Ccc------------------------hhhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHHH
Confidence 111 122222221111100 0013556799999999765 345667777776
Q ss_pred C-CCcEEEEeec
Q 004567 243 K-HRQTFLFSAT 253 (744)
Q Consensus 243 ~-~~q~ll~SAT 253 (744)
. ..+++++-=+
T Consensus 119 ~~~~klilvGD~ 130 (196)
T PF13604_consen 119 KSGAKLILVGDP 130 (196)
T ss_dssp T-T-EEEEEE-T
T ss_pred hcCCEEEEECCc
Confidence 6 4555554443
No 177
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.05 E-value=4.7e-05 Score=80.45 Aligned_cols=162 Identities=15% Similarity=0.165 Sum_probs=105.9
Q ss_pred CCcHHHHHHHHHHHc----------CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHH
Q 004567 88 KMTDIQRASLPHSLC----------GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDV 157 (744)
Q Consensus 88 ~~t~iQ~~aip~il~----------g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~ 157 (744)
.++..|.+++-.+.+ +.-.++--.||.||.-...--|++++.+. ..++|+|+.+..|-....+.
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G------r~r~vwvS~s~dL~~Da~RD 110 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG------RKRAVWVSVSNDLKYDAERD 110 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC------CCceEEEECChhhhhHHHHH
Confidence 378889998866652 34588889999999887656666665432 45699999999999999999
Q ss_pred HHHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCC----CCC-------CCCceEEEEcCchhhh
Q 004567 158 LKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETP----NFD-------CSQLQILILDEADRIL 226 (744)
Q Consensus 158 l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~----~~~-------~~~l~~lVlDEAh~ll 226 (744)
|+.++.. .+.+..+.. .+......-.-.||++|+..|...-.... .+. -+.=.+|||||||...
T Consensus 111 l~DIG~~-~i~v~~l~~----~~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~ak 185 (303)
T PF13872_consen 111 LRDIGAD-NIPVHPLNK----FKYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAK 185 (303)
T ss_pred HHHhCCC-cccceechh----hccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcC
Confidence 9988754 232222221 11111111245799999988876543211 110 0112489999999877
Q ss_pred ccc--------hHHHHHHHHHhCCCCCcEEEEeeccChhHHHH
Q 004567 227 DVG--------FKKALNAIVSQLPKHRQTFLFSATQTKSVQDL 261 (744)
Q Consensus 227 d~g--------f~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~l 261 (744)
+.. ....+..+...+|.. +++.+|||-...+..+
T Consensus 186 n~~~~~~~~sk~g~avl~LQ~~LP~A-RvvY~SATgasep~Nm 227 (303)
T PF13872_consen 186 NLSSGSKKPSKTGIAVLELQNRLPNA-RVVYASATGASEPRNM 227 (303)
T ss_pred CCCccCccccHHHHHHHHHHHhCCCC-cEEEecccccCCCcee
Confidence 653 235666777888754 4999999966554443
No 178
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.99 E-value=0.00014 Score=84.82 Aligned_cols=69 Identities=19% Similarity=0.283 Sum_probs=56.7
Q ss_pred cCCeEEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhccCcC--CCCCe-----------EEEEeCcchHHHHHHH
Q 004567 362 KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARY--NSGGR-----------SVLFLTPTEMKMLEKL 428 (744)
Q Consensus 362 ~~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRagR~--g~~G~-----------~il~l~~~e~~~l~~l 428 (744)
..++||+--++-.|+|= |+|=.++-+....|..+=+|-|||.-|. +..|. -.+++..++.+|++.|
T Consensus 483 plRFIFS~waLrEGWDN-PNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 483 PLRFIFSKWALREGWDN-PNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred cceeeeehhHHhhcCCC-CCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 56899999999999997 9999999999999999999999999985 22232 3346667788999998
Q ss_pred HHc
Q 004567 429 REA 431 (744)
Q Consensus 429 ~~~ 431 (744)
...
T Consensus 562 qkE 564 (985)
T COG3587 562 QKE 564 (985)
T ss_pred HHH
Confidence 763
No 179
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.93 E-value=1.6e-05 Score=80.39 Aligned_cols=136 Identities=19% Similarity=0.279 Sum_probs=74.2
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccC
Q 004567 86 FVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH 165 (744)
Q Consensus 86 f~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~ 165 (744)
+...|..|..++..++...-+++.||.|||||+.++..+++.+... .-.+++|+-|+.+... .+
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g-----~~~kiii~Rp~v~~~~-------~l---- 65 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG-----EYDKIIITRPPVEAGE-------DL---- 65 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT-----S-SEEEEEE-S--TT--------------
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC-----CCcEEEEEecCCCCcc-------cc----
Confidence 3567899999999999777799999999999999999999887553 2356788888875421 11
Q ss_pred CceEEEE------------------EcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhc
Q 004567 166 NFSAGLL------------------IGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILD 227 (744)
Q Consensus 166 ~~~~~~l------------------~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld 227 (744)
++-.+-+ .+ ... -........|-+.++.-+ ++..| ++ .+||+|||+.+.
T Consensus 66 GflpG~~~eK~~p~~~p~~d~l~~~~~-~~~---~~~~~~~~~Ie~~~~~~i-----RGrt~--~~-~~iIvDEaQN~t- 132 (205)
T PF02562_consen 66 GFLPGDLEEKMEPYLRPIYDALEELFG-KEK---LEELIQNGKIEIEPLAFI-----RGRTF--DN-AFIIVDEAQNLT- 132 (205)
T ss_dssp -SS---------TTTHHHHHHHTTTS--TTC---HHHHHHTTSEEEEEGGGG-----TT--B---S-EEEEE-SGGG---
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHhC-hHh---HHHHhhcCeEEEEehhhh-----cCccc--cc-eEEEEecccCCC-
Confidence 1111100 01 111 111223445666664332 22233 32 789999999765
Q ss_pred cchHHHHHHHHHhCCCCCcEEEEeec
Q 004567 228 VGFKKALNAIVSQLPKHRQTFLFSAT 253 (744)
Q Consensus 228 ~gf~~~l~~Il~~lp~~~q~ll~SAT 253 (744)
...+..++..+..+.+++++.-.
T Consensus 133 ---~~~~k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 133 ---PEELKMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp ---HHHHHHHHTTB-TT-EEEEEE--
T ss_pred ---HHHHHHHHcccCCCcEEEEecCc
Confidence 56788888888888877775543
No 180
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.87 E-value=4.4e-05 Score=75.05 Aligned_cols=110 Identities=25% Similarity=0.418 Sum_probs=74.7
Q ss_pred HHHHHhCCCcEEEEecchHHHHHHHHHHHhhCC--CCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEcc--cccccccc
Q 004567 304 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD--VASRGLDF 378 (744)
Q Consensus 304 ~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~--g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTd--v~arGlDi 378 (744)
.+++.. ++.+||||+|....+.+++.+..... ++.++.- ....+..+++.|.. ...||+|+. .++.||||
T Consensus 3 ~l~~~~-~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~ 77 (167)
T PF13307_consen 3 ELISAV-PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDF 77 (167)
T ss_dssp HHHHCC-SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--
T ss_pred HHHhcC-CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEeecC
Confidence 344433 69999999999999999998876421 3333332 34577889999999 888999998 99999999
Q ss_pred CCC--CcEEEEcCCCC----CH--------------------------hHHHHHhhccCcCCCCCeEEEEeCc
Q 004567 379 NKA--VDWVVQVDCPE----DV--------------------------ASYIHRVGRTARYNSGGRSVLFLTP 419 (744)
Q Consensus 379 ~p~--V~~VI~~d~P~----s~--------------------------~~yiQRiGRagR~g~~G~~il~l~~ 419 (744)
|+ +++||..+.|. ++ ....|.+||+-|...+--+++++++
T Consensus 78 -~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 78 -PGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp -ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred -CCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 75 88999999874 11 2347889999998776555555554
No 181
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.83 E-value=0.00011 Score=86.66 Aligned_cols=100 Identities=18% Similarity=0.171 Sum_probs=82.3
Q ss_pred cEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc---cCCeEEEccccccccccCCCCcEEEEcC
Q 004567 313 KILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE---KRSVLFCTDVASRGLDFNKAVDWVVQVD 389 (744)
Q Consensus 313 k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~---~~~VLVaTdv~arGlDi~p~V~~VI~~d 389 (744)
+++||+.-.....-+...+. +.++....+.|.|+...|...+..|.. ....+++..+...|+|+ ....+|+..|
T Consensus 541 kiiifsq~~~~l~l~~~~l~--~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnl-t~a~~v~~~d 617 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLF--FKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNL-TAASHVLLMD 617 (674)
T ss_pred ceeeehhHHHHHHHhhhhhh--hcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhch-hhhhHHHhhc
Confidence 67777666665555555554 247778889999999999999999988 23567889999999999 8899999999
Q ss_pred CCCCHhHHHHHhhccCcCCCCCeEEE
Q 004567 390 CPEDVASYIHRVGRTARYNSGGRSVL 415 (744)
Q Consensus 390 ~P~s~~~yiQRiGRagR~g~~G~~il 415 (744)
+-|++..--|.+-|+.|.|+.-.+.+
T Consensus 618 ~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 618 PWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred hhcChHHHHHHHHHHHHhcccceeee
Confidence 99999999999999999998765554
No 182
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.79 E-value=0.00023 Score=83.33 Aligned_cols=144 Identities=22% Similarity=0.275 Sum_probs=89.0
Q ss_pred cHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCceE
Q 004567 90 TDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSA 169 (744)
Q Consensus 90 t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~ 169 (744)
.++|+.|+..++.++-+++.|+.|+|||.+ +..++..+.... ....+.++++++||-.-|..+.+.+..........
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~-v~~ll~~l~~~~-~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~- 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTT-VARLLLALVKQS-PKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA- 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHH-HHHHHHHHHHhc-cccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc-
Confidence 489999999999999999999999999986 344444443221 11113579999999888877666655433221110
Q ss_pred EEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCC-----CCCCceEEEEcCchhhhccchHHHHHHHHHhCCCC
Q 004567 170 GLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNF-----DCSQLQILILDEADRILDVGFKKALNAIVSQLPKH 244 (744)
Q Consensus 170 ~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~-----~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~ 244 (744)
........+-..|-.+|+........| +.-.+++||||||-++- ...+..++..++..
T Consensus 224 -------------~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~ 286 (586)
T TIGR01447 224 -------------EALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPN 286 (586)
T ss_pred -------------hhhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCC
Confidence 000111123345555555432211111 12357899999999654 34577788888888
Q ss_pred CcEEEEeec
Q 004567 245 RQTFLFSAT 253 (744)
Q Consensus 245 ~q~ll~SAT 253 (744)
.++|++.=.
T Consensus 287 ~rlIlvGD~ 295 (586)
T TIGR01447 287 TKLILLGDK 295 (586)
T ss_pred CEEEEECCh
Confidence 888875433
No 183
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.79 E-value=0.00015 Score=87.10 Aligned_cols=68 Identities=18% Similarity=0.089 Sum_probs=49.4
Q ss_pred CCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeeccC
Q 004567 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQT 255 (744)
Q Consensus 187 ~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~ 255 (744)
....|+++||..|..-|..+ .+++..+..|||||||++.+..-..-+..++..-.+..-+.+|||.+.
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~-ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTG-IIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred hcCCEEEEechhhHhHHhcC-CCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 45679999999987766655 688899999999999998766545555555555444555666666643
No 184
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.76 E-value=0.00017 Score=84.47 Aligned_cols=144 Identities=21% Similarity=0.288 Sum_probs=89.8
Q ss_pred CcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCce
Q 004567 89 MTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFS 168 (744)
Q Consensus 89 ~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~ 168 (744)
..++|+.|+-.++.++-+++.|++|+|||.+ +..++..+... .......+++++||..-|..+.+.+.......++.
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~-v~~ll~~l~~~--~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~ 229 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTT-VAKLLAALIQL--ADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 229 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHH-HHHHHHHHHHh--cCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc
Confidence 3589999999999988999999999999986 33444444321 11224678899999998887777665433222111
Q ss_pred EEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCC-----CCCCceEEEEcCchhhhccchHHHHHHHHHhCCC
Q 004567 169 AGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNF-----DCSQLQILILDEADRILDVGFKKALNAIVSQLPK 243 (744)
Q Consensus 169 ~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~-----~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~ 243 (744)
. ........-..|-.+|+........| +.-.+++||||||-++ + ...+..++..+|.
T Consensus 230 -----~---------~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-d---~~lm~~ll~al~~ 291 (615)
T PRK10875 230 -----D---------EQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-D---LPMMARLIDALPP 291 (615)
T ss_pred -----h---------hhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-c---HHHHHHHHHhccc
Confidence 0 00011112244555555432211111 1234589999999965 3 4566778888998
Q ss_pred CCcEEEEeec
Q 004567 244 HRQTFLFSAT 253 (744)
Q Consensus 244 ~~q~ll~SAT 253 (744)
..++|++.=.
T Consensus 292 ~~rlIlvGD~ 301 (615)
T PRK10875 292 HARVIFLGDR 301 (615)
T ss_pred CCEEEEecch
Confidence 8888876543
No 185
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.73 E-value=0.00026 Score=79.56 Aligned_cols=143 Identities=22% Similarity=0.236 Sum_probs=71.7
Q ss_pred EEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHH-hhccCCceEEEEEcCcc----ChHHH
Q 004567 108 GAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKA-VGKHHNFSAGLLIGGRR----DVDME 182 (744)
Q Consensus 108 v~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~-~~~~~~~~~~~l~Gg~~----~~~~e 182 (744)
..+.||||||++....||++. ... -..-|+.|.......-+...+.. +...+-++-...+++.. .+..-
T Consensus 2 f~matgsgkt~~ma~lil~~y-~kg-----yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~f 75 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECY-KKG-----YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNF 75 (812)
T ss_pred cccccCCChhhHHHHHHHHHH-Hhc-----hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeeccc
Confidence 457899999998766666654 321 12246666554444322222111 11111122222222111 11111
Q ss_pred HHhcCCCcEEEEChHHHHHHHhcCCC--C---CCCCceEE-EEcCchhhhccc-------------hHHHHHHHHHhCCC
Q 004567 183 KEHVNELNILVCTPGRLLQHMDETPN--F---DCSQLQIL-ILDEADRILDVG-------------FKKALNAIVSQLPK 243 (744)
Q Consensus 183 ~~~~~~~~IlV~TPgrLl~~l~~~~~--~---~~~~l~~l-VlDEAh~lld~g-------------f~~~l~~Il~~lp~ 243 (744)
..-..+..|+++|.+.|...+.+... . ++.+..+| +-||||++-... +...+..-++.- +
T Consensus 76 sehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~n-k 154 (812)
T COG3421 76 SEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQN-K 154 (812)
T ss_pred CccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcC-C
Confidence 11224678999999998776654321 1 23444544 449999875331 222222222222 2
Q ss_pred CCcEEEEeeccChh
Q 004567 244 HRQTFLFSATQTKS 257 (744)
Q Consensus 244 ~~q~ll~SAT~~~~ 257 (744)
..-++.||||.+..
T Consensus 155 d~~~lef~at~~k~ 168 (812)
T COG3421 155 DNLLLEFSATIPKE 168 (812)
T ss_pred CceeehhhhcCCcc
Confidence 34577899999854
No 186
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.70 E-value=0.00045 Score=83.02 Aligned_cols=130 Identities=21% Similarity=0.212 Sum_probs=81.0
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhh
Q 004567 83 DAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162 (744)
Q Consensus 83 ~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~ 162 (744)
..++ .+++.|++|+..+..++-+++.|+.|+|||.+ +-.++..+... .....+++++||-.-|..+.+..
T Consensus 319 ~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~-l~~i~~~~~~~----~~~~~v~l~ApTg~AA~~L~e~~---- 388 (720)
T TIGR01448 319 KLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTI-TRAIIELAEEL----GGLLPVGLAAPTGRAAKRLGEVT---- 388 (720)
T ss_pred hcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH-HHHHHHHHHHc----CCCceEEEEeCchHHHHHHHHhc----
Confidence 3455 79999999999999888899999999999985 33444433221 11156888999987776433221
Q ss_pred ccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCC----CCCCCCceEEEEcCchhhhccchHHHHHHHH
Q 004567 163 KHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETP----NFDCSQLQILILDEADRILDVGFKKALNAIV 238 (744)
Q Consensus 163 ~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~----~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il 238 (744)
+.. ..|-.+|+....... .-.....++||||||+++- ...+..++
T Consensus 389 ---g~~------------------------a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll 437 (720)
T TIGR01448 389 ---GLT------------------------ASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALSLL 437 (720)
T ss_pred ---CCc------------------------cccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHHHH
Confidence 111 012222222110000 0011356799999999764 34456777
Q ss_pred HhCCCCCcEEEEeec
Q 004567 239 SQLPKHRQTFLFSAT 253 (744)
Q Consensus 239 ~~lp~~~q~ll~SAT 253 (744)
..++...+++++.=+
T Consensus 438 ~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 438 AALPDHARLLLVGDT 452 (720)
T ss_pred HhCCCCCEEEEECcc
Confidence 788888888876544
No 187
>PRK10536 hypothetical protein; Provisional
Probab=97.62 E-value=0.0012 Score=68.94 Aligned_cols=148 Identities=14% Similarity=0.127 Sum_probs=82.9
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHH-------HHH
Q 004567 84 AGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQ-------LFD 156 (744)
Q Consensus 84 ~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Q-------i~~ 156 (744)
.++...+..|...+..+.++..+++.|++|||||+..+...++.+... .-.+++|.-|+.+.... +.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~-----~~~kIiI~RP~v~~ge~LGfLPG~~~e 129 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK-----DVDRIIVTRPVLQADEDLGFLPGDIAE 129 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC-----CeeEEEEeCCCCCchhhhCcCCCCHHH
Confidence 466678899999999888888889999999999998777777665432 12345666566543210 111
Q ss_pred HHHHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHH
Q 004567 157 VLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNA 236 (744)
Q Consensus 157 ~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~ 236 (744)
.+.-+....--....+.| ....... .....-.|-|+... +|+.. .| . -++||||||+.+. ...+..
T Consensus 130 K~~p~~~pi~D~L~~~~~-~~~~~~~-~~~~~~~Iei~~l~----ymRGr-tl--~-~~~vIvDEaqn~~----~~~~k~ 195 (262)
T PRK10536 130 KFAPYFRPVYDVLVRRLG-ASFMQYC-LRPEIGKVEIAPFA----YMRGR-TF--E-NAVVILDEAQNVT----AAQMKM 195 (262)
T ss_pred HHHHHHHHHHHHHHHHhC-hHHHHHH-HHhccCcEEEecHH----HhcCC-cc--c-CCEEEEechhcCC----HHHHHH
Confidence 111111100000000112 1111100 00122345555532 23322 23 2 2789999999765 367888
Q ss_pred HHHhCCCCCcEEEE
Q 004567 237 IVSQLPKHRQTFLF 250 (744)
Q Consensus 237 Il~~lp~~~q~ll~ 250 (744)
++..++.+.++|+.
T Consensus 196 ~ltR~g~~sk~v~~ 209 (262)
T PRK10536 196 FLTRLGENVTVIVN 209 (262)
T ss_pred HHhhcCCCCEEEEe
Confidence 88888888776654
No 188
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.61 E-value=0.00023 Score=78.46 Aligned_cols=107 Identities=21% Similarity=0.313 Sum_probs=67.4
Q ss_pred EEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHh
Q 004567 106 ILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEH 185 (744)
Q Consensus 106 vlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~ 185 (744)
++|.|..|||||+.. +-++..+. ....+..++++++...|...+...+.... ..
T Consensus 4 ~~I~G~aGTGKTvla-~~l~~~l~----~~~~~~~~~~l~~n~~l~~~l~~~l~~~~----------~~----------- 57 (352)
T PF09848_consen 4 ILITGGAGTGKTVLA-LNLAKELQ----NSEEGKKVLYLCGNHPLRNKLREQLAKKY----------NP----------- 57 (352)
T ss_pred EEEEecCCcCHHHHH-HHHHHHhh----ccccCCceEEEEecchHHHHHHHHHhhhc----------cc-----------
Confidence 789999999999974 33333331 11356779999999999987777665432 00
Q ss_pred cCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccc-------hHHHHHHHHHh
Q 004567 186 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG-------FKKALNAIVSQ 240 (744)
Q Consensus 186 ~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~g-------f~~~l~~Il~~ 240 (744)
......+..|..+...+... ......+++||+||||++...+ ....+..++..
T Consensus 58 -~~~~~~~~~~~~~i~~~~~~-~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 -KLKKSDFRKPTSFINNYSES-DKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred -chhhhhhhhhHHHHhhcccc-cccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 01122344455554443311 2234788999999999998832 23566666665
No 189
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.60 E-value=0.0002 Score=81.03 Aligned_cols=65 Identities=20% Similarity=0.415 Sum_probs=51.9
Q ss_pred CCcHHHHHHHHHHHcCCC-EEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHH
Q 004567 88 KMTDIQRASLPHSLCGRD-ILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLK 159 (744)
Q Consensus 88 ~~t~iQ~~aip~il~g~d-vlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~ 159 (744)
.+.+-|..|+..+.+.++ .+++||+|+|||.+... ++.++.. .+.++||++||.+-+..|.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvE-iI~qlvk------~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVE-IISQLVK------QKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHH-HHHHHHH------cCCeEEEEcCchHHHHHHHHHhc
Confidence 577889999999998877 67899999999997444 4444433 36889999999999888888543
No 190
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.55 E-value=0.00047 Score=81.69 Aligned_cols=66 Identities=21% Similarity=0.421 Sum_probs=52.9
Q ss_pred CCcHHHHHHHHHHHcC-CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHH
Q 004567 88 KMTDIQRASLPHSLCG-RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKA 160 (744)
Q Consensus 88 ~~t~iQ~~aip~il~g-~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~ 160 (744)
.+++.|..|+..++.. ..+++.||+|+|||.+. ..++..+.. .|.++|+++||..-+.++.+.+..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~-~~ii~~~~~------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTL-VELIRQLVK------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHH-HHHHHHHHH------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 5799999999999987 56889999999999863 444444433 356899999999999988888776
No 191
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.50 E-value=0.00048 Score=78.25 Aligned_cols=77 Identities=19% Similarity=0.265 Sum_probs=61.8
Q ss_pred HHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHH
Q 004567 80 GLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLK 159 (744)
Q Consensus 80 ~L~~~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~ 159 (744)
.+...|+..++.-|..|+.++|+..=.|++||.|+|||.+... |+-+|.+. .+..+||++|+.--+.|+.+.+.
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~-IVyhl~~~-----~~~~VLvcApSNiAVDqLaeKIh 475 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ-----HAGPVLVCAPSNIAVDQLAEKIH 475 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHH-HHHHHHHh-----cCCceEEEcccchhHHHHHHHHH
Confidence 3445677889999999999999998899999999999997543 33344333 45669999999999999999887
Q ss_pred Hhh
Q 004567 160 AVG 162 (744)
Q Consensus 160 ~~~ 162 (744)
+.+
T Consensus 476 ~tg 478 (935)
T KOG1802|consen 476 KTG 478 (935)
T ss_pred hcC
Confidence 765
No 192
>PF13245 AAA_19: Part of AAA domain
Probab=97.43 E-value=0.00051 Score=58.30 Aligned_cols=60 Identities=27% Similarity=0.437 Sum_probs=40.4
Q ss_pred HHHHHHcCCC-EEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHH
Q 004567 96 SLPHSLCGRD-ILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVL 158 (744)
Q Consensus 96 aip~il~g~d-vlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l 158 (744)
+|...+.+.. +++.||.|||||...+-.+...+... ... +.+++|++||+..+..+.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~--~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAAR--ADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHh--cCC-CCeEEEECCCHHHHHHHHHHH
Confidence 4443444444 55699999999976444444433211 112 678999999999999888777
No 193
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.32 E-value=0.00082 Score=72.05 Aligned_cols=124 Identities=18% Similarity=0.208 Sum_probs=76.6
Q ss_pred CcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCce
Q 004567 89 MTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFS 168 (744)
Q Consensus 89 ~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~ 168 (744)
||+-|.++|.. ...+++|.|..|||||.+.+.-++..+.... ....++|+|++|+..|..+...+...+......
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~---~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~ 75 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG---VPPERILVLTFTNAAAQEMRERIRELLEEEQQE 75 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS---STGGGEEEEESSHHHHHHHHHHHHHHHHHCCHC
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc---CChHHheecccCHHHHHHHHHHHHHhcCccccc
Confidence 68899999987 5678999999999999987666666665443 234669999999999999998888865432110
Q ss_pred EEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCC-CCceEEEEcCch
Q 004567 169 AGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDC-SQLQILILDEAD 223 (744)
Q Consensus 169 ~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~-~~l~~lVlDEAh 223 (744)
. ...............+.|+|-..+...+........ -.-.+-++|+..
T Consensus 76 ~------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 76 S------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp C------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred c------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 0 000111111222456889999887665433211111 122356677766
No 194
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.12 E-value=0.0063 Score=74.87 Aligned_cols=126 Identities=18% Similarity=0.175 Sum_probs=76.9
Q ss_pred CCCCCCcHHHHHHHHHHHcCCC-EEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhh
Q 004567 84 AGFVKMTDIQRASLPHSLCGRD-ILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162 (744)
Q Consensus 84 ~gf~~~t~iQ~~aip~il~g~d-vlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~ 162 (744)
.|+ .+++-|++|+..++.+++ +++.|..|+|||.+ +-.+.+. +.. .|..++.++||---|..+.+
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~-~e~-----~G~~V~~~ApTGkAA~~L~e------ 408 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREA-WEA-----AGYEVRGAALSGIAAENLEG------ 408 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHH-HHH-----cCCeEEEecCcHHHHHHHhh------
Confidence 455 799999999999998766 68999999999985 3444433 332 47789999999766643221
Q ss_pred ccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHhC-
Q 004567 163 KHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL- 241 (744)
Q Consensus 163 ~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~l- 241 (744)
..++.. .|-.+|+...... ...+...++||||||-++... .+..++...
T Consensus 409 -~tGi~a------------------------~TI~sll~~~~~~-~~~l~~~~vlIVDEASMv~~~----~m~~LL~~a~ 458 (988)
T PRK13889 409 -GSGIAS------------------------RTIASLEHGWGQG-RDLLTSRDVLVIDEAGMVGTR----QLERVLSHAA 458 (988)
T ss_pred -ccCcch------------------------hhHHHHHhhhccc-ccccccCcEEEEECcccCCHH----HHHHHHHhhh
Confidence 111110 1333332211111 122456689999999966533 344444433
Q ss_pred CCCCcEEEEeec
Q 004567 242 PKHRQTFLFSAT 253 (744)
Q Consensus 242 p~~~q~ll~SAT 253 (744)
+...++||+.=+
T Consensus 459 ~~garvVLVGD~ 470 (988)
T PRK13889 459 DAGAKVVLVGDP 470 (988)
T ss_pred hCCCEEEEECCH
Confidence 345667765544
No 195
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.10 E-value=0.0048 Score=63.16 Aligned_cols=126 Identities=18% Similarity=0.257 Sum_probs=77.4
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHc---CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEE
Q 004567 68 FDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLC---GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIII 144 (744)
Q Consensus 68 F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~---g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl 144 (744)
|+....+.+++=-+ ..++ .+++.|.+....+.+ |.|.+.+.-+|.|||.+ ++|++..++.+ ...-+.++
T Consensus 5 w~p~~~P~wLl~E~-e~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd-----g~~Lvrvi 76 (229)
T PF12340_consen 5 WDPMEYPDWLLFEI-ESNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD-----GSRLVRVI 76 (229)
T ss_pred CCchhChHHHHHHH-HcCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC-----CCcEEEEE
Confidence 44444455554333 2333 799999999988886 57899999999999997 78988887654 22335555
Q ss_pred cCChHHHHHHHHHHHHh-hccCCceEEEEEcC-ccCh-----HHHH----HhcCCCcEEEEChHHHHHH
Q 004567 145 SPTRELADQLFDVLKAV-GKHHNFSAGLLIGG-RRDV-----DMEK----EHVNELNILVCTPGRLLQH 202 (744)
Q Consensus 145 ~PtreLa~Qi~~~l~~~-~~~~~~~~~~l~Gg-~~~~-----~~e~----~~~~~~~IlV~TPgrLl~~ 202 (744)
+| ++|..|.+..++.- +.-.+-.+..+-=+ .... ..-. .....-.|+++||+.++..
T Consensus 77 Vp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 77 VP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred cC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHH
Confidence 55 46999999988763 33222222211100 1111 1111 1113457999999987554
No 196
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.07 E-value=0.0016 Score=60.48 Aligned_cols=17 Identities=35% Similarity=0.388 Sum_probs=12.2
Q ss_pred CCCEEEEccCCCchhHH
Q 004567 103 GRDILGAAKTGSGKTLA 119 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla 119 (744)
++.+++.|++|+|||.+
T Consensus 4 ~~~~~i~G~~G~GKT~~ 20 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTL 20 (131)
T ss_dssp ---EEEEE-TTSSHHHH
T ss_pred CcccEEEcCCCCCHHHH
Confidence 45689999999999986
No 197
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.04 E-value=0.0098 Score=71.90 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=44.9
Q ss_pred CCcHHHHHHHHHHHcC-CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHH
Q 004567 88 KMTDIQRASLPHSLCG-RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQ 153 (744)
Q Consensus 88 ~~t~iQ~~aip~il~g-~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Q 153 (744)
.+++-|+.|+..++.+ +-+++.|+.|+|||.. +-.++..+ .. .|..+++++||---|..
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~~~-~~-----~g~~V~~~ApTg~Aa~~ 411 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREAW-EA-----AGYRVIGAALSGKAAEG 411 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHHHH-Hh-----CCCeEEEEeCcHHHHHH
Confidence 6899999999999875 4578999999999975 33343333 32 36789999999776654
No 198
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.03 E-value=0.0022 Score=75.98 Aligned_cols=135 Identities=26% Similarity=0.309 Sum_probs=89.3
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCC-EEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHH
Q 004567 72 PISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRD-ILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTREL 150 (744)
Q Consensus 72 ~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~d-vlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreL 150 (744)
.+.+.+++. -+..++.-|++|+-.++..+| .|+.|-+|+|||.. +..++..|+. .|.++|+.+=|..-
T Consensus 657 ~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTt-I~~LIkiL~~------~gkkVLLtsyThsA 725 (1100)
T KOG1805|consen 657 VLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTT-ISLLIKILVA------LGKKVLLTSYTHSA 725 (1100)
T ss_pred ccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhh-HHHHHHHHHH------cCCeEEEEehhhHH
Confidence 345555443 345788999999999998877 78999999999986 3334444433 37889999988877
Q ss_pred HHHHHHHHHHhhccCCceEEEEEcCc------------------cChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCC
Q 004567 151 ADQLFDVLKAVGKHHNFSAGLLIGGR------------------RDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCS 212 (744)
Q Consensus 151 a~Qi~~~l~~~~~~~~~~~~~l~Gg~------------------~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~ 212 (744)
+..|.-.|+.++-. .+-.|.. .++..-...+..+.||.||--.+. .+.|..+
T Consensus 726 VDNILiKL~~~~i~-----~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~-----~plf~~R 795 (1100)
T KOG1805|consen 726 VDNILIKLKGFGIY-----ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN-----HPLFVNR 795 (1100)
T ss_pred HHHHHHHHhccCcc-----eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC-----chhhhcc
Confidence 77666666554321 1112211 122233345567889999954432 3456667
Q ss_pred CceEEEEcCchhhhc
Q 004567 213 QLQILILDEADRILD 227 (744)
Q Consensus 213 ~l~~lVlDEAh~lld 227 (744)
.+++.|||||-.|..
T Consensus 796 ~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 796 QFDYCIIDEASQILL 810 (1100)
T ss_pred ccCEEEEcccccccc
Confidence 899999999997654
No 199
>PRK04296 thymidine kinase; Provisional
Probab=96.78 E-value=0.005 Score=61.81 Aligned_cols=109 Identities=15% Similarity=0.189 Sum_probs=58.2
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCC---hHHHHHHHHHHHHhhccCCceEEEEEcCccChH
Q 004567 104 RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPT---RELADQLFDVLKAVGKHHNFSAGLLIGGRRDVD 180 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~Pt---reLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~ 180 (744)
.=.++.|++|+|||...+ -++..+. ..|.+++|+.|. +.... .+....++...
T Consensus 3 ~i~litG~~GsGKTT~~l-~~~~~~~------~~g~~v~i~k~~~d~~~~~~-------~i~~~lg~~~~---------- 58 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELL-QRAYNYE------ERGMKVLVFKPAIDDRYGEG-------KVVSRIGLSRE---------- 58 (190)
T ss_pred EEEEEECCCCCHHHHHHH-HHHHHHH------HcCCeEEEEeccccccccCC-------cEecCCCCccc----------
Confidence 346889999999998643 3333332 236778888773 22211 11111111100
Q ss_pred HHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeec
Q 004567 181 MEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 253 (744)
Q Consensus 181 ~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT 253 (744)
.+.+..+..+++.+.. .-.+.++|||||||.+-. ..+..++..+......+++++-
T Consensus 59 ---------~~~~~~~~~~~~~~~~----~~~~~dvviIDEaq~l~~----~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 59 ---------AIPVSSDTDIFELIEE----EGEKIDCVLIDEAQFLDK----EQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred ---------ceEeCChHHHHHHHHh----hCCCCCEEEEEccccCCH----HHHHHHHHHHHHcCCeEEEEec
Confidence 0123455566665544 225678999999986422 3355555554333445555554
No 200
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.77 E-value=0.022 Score=70.74 Aligned_cols=138 Identities=14% Similarity=0.151 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC-CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHH
Q 004567 72 PISKKTKSGLKDAGFVKMTDIQRASLPHSLCG-RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTREL 150 (744)
Q Consensus 72 ~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g-~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreL 150 (744)
++++..+......++ .+++-|..++..+..+ +-+++.|+.|+|||.+ +-++.+.+ . ..|..++.++||---
T Consensus 366 ~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~-e-----~~G~~V~g~ApTgkA 437 (1102)
T PRK13826 366 GVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAW-E-----AAGYRVVGGALAGKA 437 (1102)
T ss_pred CCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHH-H-----HcCCeEEEEcCcHHH
Confidence 345555555444444 7999999999988654 4488999999999985 44444433 2 247789999999766
Q ss_pred HHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccch
Q 004567 151 ADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGF 230 (744)
Q Consensus 151 a~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf 230 (744)
|..+ ... .++... |-.+|+...... ...+..-.+||||||-++..
T Consensus 438 A~~L----~e~---~Gi~a~------------------------TIas~ll~~~~~-~~~l~~~~vlVIDEAsMv~~--- 482 (1102)
T PRK13826 438 AEGL----EKE---AGIQSR------------------------TLSSWELRWNQG-RDQLDNKTVFVLDEAGMVAS--- 482 (1102)
T ss_pred HHHH----HHh---hCCCee------------------------eHHHHHhhhccC-ccCCCCCcEEEEECcccCCH---
Confidence 6533 221 122211 222221111111 12245567999999996643
Q ss_pred HHHHHHHHHhCC-CCCcEEEEeec
Q 004567 231 KKALNAIVSQLP-KHRQTFLFSAT 253 (744)
Q Consensus 231 ~~~l~~Il~~lp-~~~q~ll~SAT 253 (744)
..+..++...+ ...++||+.=+
T Consensus 483 -~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 483 -RQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred -HHHHHHHHHHHhcCCEEEEECCH
Confidence 33444555543 35667765544
No 201
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.72 E-value=0.02 Score=63.79 Aligned_cols=122 Identities=13% Similarity=0.132 Sum_probs=66.8
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEc--CChHHHHHHHHHHHHhhccCCceEEEEEcCccChHH
Q 004567 104 RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIIS--PTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDM 181 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~--PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~ 181 (744)
+.+++.||||+|||.+..--+ ..+ ..... ..|..+.+++ +.|.-+.. .++.++...++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA-~~~-~~~~~-~~g~~V~lit~Dt~R~aa~e---QL~~~a~~lgvpv~~---------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLA-AIY-GINSD-DKSLNIKIITIDNYRIGAKK---QIQTYGDIMGIPVKA---------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHH-Hhhhc-cCCCeEEEEeccCccHHHHH---HHHHHhhcCCcceEe----------
Confidence 458899999999998742222 222 11100 1233444433 34554442 255555544443311
Q ss_pred HHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccc-hHHHHHHHHHhCCCC-CcEEEEeeccChh
Q 004567 182 EKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG-FKKALNAIVSQLPKH-RQTFLFSATQTKS 257 (744)
Q Consensus 182 e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~g-f~~~l~~Il~~lp~~-~q~ll~SAT~~~~ 257 (744)
+-++..+...+.. +.+.++||||++.+..... ....+..++...... ..++.+|||....
T Consensus 239 -----------~~~~~~l~~~L~~-----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~ 300 (388)
T PRK12723 239 -----------IESFKDLKEEITQ-----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTS 300 (388)
T ss_pred -----------eCcHHHHHHHHHH-----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHH
Confidence 1234555444443 2567899999999875321 234555666655433 4578899997643
No 202
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.70 E-value=0.0092 Score=70.41 Aligned_cols=76 Identities=22% Similarity=0.201 Sum_probs=50.7
Q ss_pred CCcHHHHHHHHHHHc----CCCEEEEccCCCchhHHhHHHHHHHHHh------------cc-----------CC------
Q 004567 88 KMTDIQRASLPHSLC----GRDILGAAKTGSGKTLAFVIPVLEKLYK------------ER-----------WG------ 134 (744)
Q Consensus 88 ~~t~iQ~~aip~il~----g~dvlv~a~TGSGKTla~llpil~~L~~------------~~-----------~~------ 134 (744)
+|++.|...+..++. ..+.++.+|||+|||++.|-..|.-... .+ ++
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 689999987776664 5789999999999999865444432211 11 00
Q ss_pred --C----CCCceEEEEcCChHHHHHHHHHHHHhhc
Q 004567 135 --P----EDGVGSIIISPTRELADQLFDVLKAVGK 163 (744)
Q Consensus 135 --~----~~g~~aLIl~PtreLa~Qi~~~l~~~~~ 163 (744)
+ ..-+++++-+-|..-..|+.+++++.+-
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y 135 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGY 135 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCC
Confidence 0 0135567777777777888888887653
No 203
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.66 E-value=0.085 Score=70.05 Aligned_cols=209 Identities=15% Similarity=0.128 Sum_probs=110.0
Q ss_pred CCcHHHHHHHHHHHcCC--CEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccC
Q 004567 88 KMTDIQRASLPHSLCGR--DILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH 165 (744)
Q Consensus 88 ~~t~iQ~~aip~il~g~--dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~ 165 (744)
.+++-|+.|+..++.+. =+++.|+.|+|||.+ +-.++ .++.. .|..+++++||-.-+.++.+...
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~-~~~~~-----~G~~V~~lAPTgrAA~~L~e~~g------ 495 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLL-HLASE-----QGYEIQIITAGSLSAQELRQKIP------ 495 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHH-HHHHh-----cCCeEEEEeCCHHHHHHHHHHhc------
Confidence 68999999999999864 488999999999985 33333 33332 47889999999876665444321
Q ss_pred CceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHhC-CCC
Q 004567 166 NFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL-PKH 244 (744)
Q Consensus 166 ~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~l-p~~ 244 (744)
+... .+.......... .-..|..+|+ .. ...+..-++||||||-++. ...+..++... +..
T Consensus 496 -~~A~-------Ti~~~l~~l~~~-~~~~tv~~fl---~~--~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~g 557 (1960)
T TIGR02760 496 -RLAS-------TFITWVKNLFND-DQDHTVQGLL---DK--SSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHN 557 (1960)
T ss_pred -chhh-------hHHHHHHhhccc-ccchhHHHhh---cc--cCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcC
Confidence 1110 000000000000 1122333333 11 2223566899999999664 34455555544 456
Q ss_pred CcEEEEeecc-------ChhHHHHHHHhcCCCccccccccccccCccccceeEEEcChhhHHHHHHHHHHH-h-CCCcEE
Q 004567 245 RQTFLFSATQ-------TKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKA-H-LNSKIL 315 (744)
Q Consensus 245 ~q~ll~SAT~-------~~~v~~la~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl~~L~~lLk~-~-~~~k~I 315 (744)
.++||+.=+- .+....+....+ |.+... . .......+ .+.......+...+..-... . ....++
T Consensus 558 arvVlvGD~~QL~sV~aG~~f~~L~~~gv--~t~~l~-~--i~rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tl 630 (1960)
T TIGR02760 558 SKLILLNDSAQRQGMSAGSAIDLLKEGGV--TTYAWV-D--TKQQKASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQ 630 (1960)
T ss_pred CEEEEEcChhhcCccccchHHHHHHHCCC--cEEEee-c--ccccCcce--eeeccCchHHHHHHHHHHHhcccccCceE
Confidence 7888776551 122222222221 111111 0 00111111 12222222333333333222 2 234689
Q ss_pred EEecchHHHHHHHHHHHhh
Q 004567 316 VFLTSCKQVKYVFEAFKKL 334 (744)
Q Consensus 316 VF~~s~~~v~~l~~~L~~l 334 (744)
|+..+....+.|...++..
T Consensus 631 iv~~t~~dr~~Ln~~iR~~ 649 (1960)
T TIGR02760 631 VLATTHREQQDLTQIIRNA 649 (1960)
T ss_pred EEcCCcHHHHHHHHHHHHH
Confidence 9999988888888877663
No 204
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.62 E-value=0.0078 Score=66.76 Aligned_cols=59 Identities=20% Similarity=0.305 Sum_probs=44.7
Q ss_pred CCcHHHHHHHHHH------HcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHH
Q 004567 88 KMTDIQRASLPHS------LCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQ 153 (744)
Q Consensus 88 ~~t~iQ~~aip~i------l~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Q 153 (744)
++++-|+.++..+ ..+..+.+.|+-|+|||.. +-.+...++. .+..+++++||-.-|..
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~~-----~~~~~~~~a~tg~AA~~ 65 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLRS-----RGKKVLVTAPTGIAAFN 65 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhcc-----ccceEEEecchHHHHHh
Confidence 3678899998888 5678899999999999974 4444444432 46779999999766653
No 205
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.53 E-value=0.029 Score=52.01 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCchhHH
Q 004567 103 GRDILGAAKTGSGKTLA 119 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla 119 (744)
++.+++.|++|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 57799999999999974
No 206
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.50 E-value=0.0071 Score=73.67 Aligned_cols=155 Identities=21% Similarity=0.206 Sum_probs=101.7
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhc-----------cCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCceEEE
Q 004567 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKE-----------RWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGL 171 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~llpil~~L~~~-----------~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~ 171 (744)
|++++.+-..|+|||.+-+...+..+-.. .-........|||||. ++..||++.+.+-.... +.+..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Confidence 57789999999999998666555442110 0011122347999997 57789999999876543 67777
Q ss_pred EEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCC-------------CC-CC-----ceEEEEcCchhhhccchHH
Q 004567 172 LIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNF-------------DC-SQ-----LQILILDEADRILDVGFKK 232 (744)
Q Consensus 172 l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~-------------~~-~~-----l~~lVlDEAh~lld~gf~~ 232 (744)
..|-.+........+-.++||++|+..|..-|..+..+ +. +. +=-|++|||+++-. -..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHH
Confidence 77733322233355668999999999997766544111 00 11 11489999996554 456
Q ss_pred HHHHHHHhCCCCCcEEEEeeccChhHHHHH
Q 004567 233 ALNAIVSQLPKHRQTFLFSATQTKSVQDLA 262 (744)
Q Consensus 233 ~l~~Il~~lp~~~q~ll~SAT~~~~v~~la 262 (744)
....++..++ ....-++|+|+-..+.++.
T Consensus 530 ~~a~M~~rL~-~in~W~VTGTPiq~Iddl~ 558 (1394)
T KOG0298|consen 530 AAAEMVRRLH-AINRWCVTGTPIQKIDDLF 558 (1394)
T ss_pred HHHHHHHHhh-hhceeeecCCchhhhhhhH
Confidence 6777777776 3568899999766666544
No 207
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.47 E-value=0.0072 Score=55.47 Aligned_cols=42 Identities=33% Similarity=0.310 Sum_probs=25.6
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHH
Q 004567 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELA 151 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa 151 (744)
+..+++.||+|||||... .-++..+. ..+..++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~-~~l~~~~~------~~~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA-RALARELG------PPGGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHH-HHHHhccC------CCCCCEEEECCEEccc
Confidence 567899999999999862 22222221 1112477777765443
No 208
>PRK08181 transposase; Validated
Probab=96.46 E-value=0.033 Score=59.06 Aligned_cols=108 Identities=16% Similarity=0.184 Sum_probs=58.8
Q ss_pred HHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccCh
Q 004567 100 SLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDV 179 (744)
Q Consensus 100 il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~ 179 (744)
+-.++++++.||+|+|||.... .+...+.. .|..++++ +..+|..++.... . .
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~-Aia~~a~~------~g~~v~f~-~~~~L~~~l~~a~---------------~-~--- 155 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAA-AIGLALIE------NGWRVLFT-RTTDLVQKLQVAR---------------R-E--- 155 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHH-HHHHHHHH------cCCceeee-eHHHHHHHHHHHH---------------h-C---
Confidence 4467899999999999997432 33333322 24545554 4455555432110 0 0
Q ss_pred HHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccch-HHHHHHHHHhCCCCCcEEEEeeccCh
Q 004567 180 DMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGF-KKALNAIVSQLPKHRQTFLFSATQTK 256 (744)
Q Consensus 180 ~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf-~~~l~~Il~~lp~~~q~ll~SAT~~~ 256 (744)
.+...++..+ .+.++|||||.+.+....+ ...+..++........+|+.|-..+.
T Consensus 156 --------------~~~~~~l~~l--------~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~ 211 (269)
T PRK08181 156 --------------LQLESAIAKL--------DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFG 211 (269)
T ss_pred --------------CcHHHHHHHH--------hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHH
Confidence 1222333322 4567899999997654332 34556666554444556655555443
No 209
>PRK06526 transposase; Provisional
Probab=96.42 E-value=0.014 Score=61.34 Aligned_cols=46 Identities=17% Similarity=0.093 Sum_probs=27.3
Q ss_pred CCceEEEEcCchhhhccc-hHHHHHHHHHhCCCCCcEEEEeeccChh
Q 004567 212 SQLQILILDEADRILDVG-FKKALNAIVSQLPKHRQTFLFSATQTKS 257 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~g-f~~~l~~Il~~lp~~~q~ll~SAT~~~~ 257 (744)
...++|||||+|.+.... -...+..++........+|+.|...+..
T Consensus 158 ~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~ 204 (254)
T PRK06526 158 GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGR 204 (254)
T ss_pred ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHH
Confidence 456899999999764222 2334555554433334577777765544
No 210
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.41 E-value=0.07 Score=50.81 Aligned_cols=44 Identities=20% Similarity=0.339 Sum_probs=27.5
Q ss_pred CCceEEEEcCchhhhccc----------hHHHHHHHHHhCCCCCcEEEEeeccC
Q 004567 212 SQLQILILDEADRILDVG----------FKKALNAIVSQLPKHRQTFLFSATQT 255 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~g----------f~~~l~~Il~~lp~~~q~ll~SAT~~ 255 (744)
....++||||++.+.+.. ....+..+........-++++....+
T Consensus 84 ~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~ 137 (165)
T cd01120 84 GGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVP 137 (165)
T ss_pred CCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecC
Confidence 467899999999876542 23555666666554444555555543
No 211
>PRK14974 cell division protein FtsY; Provisional
Probab=96.39 E-value=0.036 Score=60.54 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=40.8
Q ss_pred CCceEEEEcCchhhh-ccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHh
Q 004567 212 SQLQILILDEADRIL-DVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLS 265 (744)
Q Consensus 212 ~~l~~lVlDEAh~ll-d~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~ 265 (744)
.+.++|+||.|.++- +..+...+..+...+.+...++.++||...+....+..+
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f 275 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREF 275 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHH
Confidence 356799999999876 455677788888777777778889999877666555544
No 212
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.31 E-value=0.016 Score=62.55 Aligned_cols=65 Identities=25% Similarity=0.214 Sum_probs=49.2
Q ss_pred HCCCCCCcHHHHHHHHHHHcCC--CEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHH
Q 004567 83 DAGFVKMTDIQRASLPHSLCGR--DILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELA 151 (744)
Q Consensus 83 ~~gf~~~t~iQ~~aip~il~g~--dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa 151 (744)
-.|+...+-.|.-|+.+++.-. =|.+.|+.|||||+.++.+.++..+..+ .-.++||.=|+..+.
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~----~y~KiiVtRp~vpvG 289 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK----RYRKIIVTRPTVPVG 289 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh----hhceEEEecCCcCcc
Confidence 3688788888999998888642 2678999999999999999988876653 224467777776654
No 213
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.31 E-value=0.028 Score=62.20 Aligned_cols=129 Identities=14% Similarity=0.135 Sum_probs=64.4
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEc-CC-hHHHHHHHHHHHHhhccCCceEEEEEcCccChH
Q 004567 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIIS-PT-RELADQLFDVLKAVGKHHNFSAGLLIGGRRDVD 180 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~-Pt-reLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~ 180 (744)
|..+++.||||+|||.....-+....... ...++.+++ -+ |.-+ .+.++.++..+++.+..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~-----G~~~V~lit~D~~R~ga---~EqL~~~a~~~gv~~~~--------- 199 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRF-----GASKVALLTTDSYRIGG---HEQLRIFGKILGVPVHA--------- 199 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-----CCCeEEEEecccccccH---HHHHHHHHHHcCCceEe---------
Confidence 56788999999999997433322222111 112333333 22 2212 34455555444443322
Q ss_pred HHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhc-cchHHHHHHHHHhCCCCCcEEEEeeccChhH-
Q 004567 181 MEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILD-VGFKKALNAIVSQLPKHRQTFLFSATQTKSV- 258 (744)
Q Consensus 181 ~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld-~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v- 258 (744)
+.+++.+...+.. +.+.++|+||.+-+... ......+..+.........++.+|||.....
T Consensus 200 ------------~~~~~~l~~~l~~-----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l 262 (374)
T PRK14722 200 ------------VKDGGDLQLALAE-----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTL 262 (374)
T ss_pred ------------cCCcccHHHHHHH-----hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHH
Confidence 2234444333332 24568899999975432 2233334433332223345788899975544
Q ss_pred HHHHHHh
Q 004567 259 QDLARLS 265 (744)
Q Consensus 259 ~~la~~~ 265 (744)
....+.+
T Consensus 263 ~evi~~f 269 (374)
T PRK14722 263 NEVVQAY 269 (374)
T ss_pred HHHHHHH
Confidence 3344433
No 214
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.27 E-value=0.015 Score=61.44 Aligned_cols=48 Identities=21% Similarity=0.467 Sum_probs=34.6
Q ss_pred CCCCCCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeeccCh
Q 004567 208 NFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTK 256 (744)
Q Consensus 208 ~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~ 256 (744)
...+..+.+|||||||.|.... ...+.+.+...+....+++...-++.
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnylsr 171 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYLSR 171 (346)
T ss_pred CCCCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCChhh
Confidence 3456788999999999877543 56677777777777777776655443
No 215
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.14 E-value=0.013 Score=61.24 Aligned_cols=86 Identities=19% Similarity=0.302 Sum_probs=61.0
Q ss_pred CCCceEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhc--CCCcEEEEChHHHHHHHhcCCCCCCCC
Q 004567 136 EDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV--NELNILVCTPGRLLQHMDETPNFDCSQ 213 (744)
Q Consensus 136 ~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~--~~~~IlV~TPgrLl~~l~~~~~~~~~~ 213 (744)
.+.+.+||||.+--=|..+.+.++.+.. -+..++-+++-...+......+ ..++|.||||+||..++..+ .+.+++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~-~L~l~~ 201 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENG-ALSLSN 201 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcC-CCCccc
Confidence 4457789999887667777777776631 1233444454233444444444 36899999999999999766 788999
Q ss_pred ceEEEEcCch
Q 004567 214 LQILILDEAD 223 (744)
Q Consensus 214 l~~lVlDEAh 223 (744)
+.+||||=-|
T Consensus 202 l~~ivlD~s~ 211 (252)
T PF14617_consen 202 LKRIVLDWSY 211 (252)
T ss_pred CeEEEEcCCc
Confidence 9999999876
No 216
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.12 E-value=0.042 Score=52.47 Aligned_cols=72 Identities=19% Similarity=0.233 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHhc-c-CCeEEEccccccccccCCC--CcEEEEcCCCCC----------------------------
Q 004567 346 RMKQDRRMAIYAQFCE-K-RSVLFCTDVASRGLDFNKA--VDWVVQVDCPED---------------------------- 393 (744)
Q Consensus 346 ~~~~~~R~~i~~~F~~-~-~~VLVaTdv~arGlDi~p~--V~~VI~~d~P~s---------------------------- 393 (744)
+....+...+++.|.. . ..||++|.-++.|||| |+ +++||....|..
T Consensus 30 ~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~-~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 108 (141)
T smart00492 30 GEDGKETGKLLEKYVEACENAILLATARFSEGVDF-PGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSL 108 (141)
T ss_pred CCChhHHHHHHHHHHHcCCCEEEEEccceecceec-CCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHH
Confidence 3445567888999988 3 4799999889999999 76 678998887631
Q ss_pred ---HhHHHHHhhccCcCCCCCeEEEEeC
Q 004567 394 ---VASYIHRVGRTARYNSGGRSVLFLT 418 (744)
Q Consensus 394 ---~~~yiQRiGRagR~g~~G~~il~l~ 418 (744)
.....|.+||+-|...+--+++++.
T Consensus 109 ~~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 109 PDAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred HHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 1334677888888765533444443
No 217
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.09 E-value=0.021 Score=57.59 Aligned_cols=127 Identities=20% Similarity=0.225 Sum_probs=68.0
Q ss_pred EEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEE-EEcC-ChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHH
Q 004567 106 ILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSI-IISP-TRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEK 183 (744)
Q Consensus 106 vlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aL-Il~P-treLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~ 183 (744)
++++||||+|||.+. .-+... +.. . +.++. |-+- .|.=| .+.++.++...++.+....- ..
T Consensus 4 i~lvGptGvGKTTt~-aKLAa~-~~~----~-~~~v~lis~D~~R~ga---~eQL~~~a~~l~vp~~~~~~-~~------ 66 (196)
T PF00448_consen 4 IALVGPTGVGKTTTI-AKLAAR-LKL----K-GKKVALISADTYRIGA---VEQLKTYAEILGVPFYVART-ES------ 66 (196)
T ss_dssp EEEEESTTSSHHHHH-HHHHHH-HHH----T-T--EEEEEESTSSTHH---HHHHHHHHHHHTEEEEESST-TS------
T ss_pred EEEECCCCCchHhHH-HHHHHH-Hhh----c-cccceeecCCCCCccH---HHHHHHHHHHhccccchhhc-ch------
Confidence 678999999999973 222222 222 1 33343 3333 34334 35555555554554332211 11
Q ss_pred HhcCCCcEEEEChHHHH-HHHhcCCCCCCCCceEEEEcCchhhh-ccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHH
Q 004567 184 EHVNELNILVCTPGRLL-QHMDETPNFDCSQLQILILDEADRIL-DVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDL 261 (744)
Q Consensus 184 ~~~~~~~IlV~TPgrLl-~~l~~~~~~~~~~l~~lVlDEAh~ll-d~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~l 261 (744)
.|..++ +.+.. +..++.++|+||=+-+.. +......+..++..+.+..-.+.+|||........
T Consensus 67 -----------~~~~~~~~~l~~---~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~ 132 (196)
T PF00448_consen 67 -----------DPAEIAREALEK---FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQ 132 (196)
T ss_dssp -----------CHHHHHHHHHHH---HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHH
T ss_pred -----------hhHHHHHHHHHH---HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHH
Confidence 132322 22321 112457789999887554 23345667777777766667888999987765544
Q ss_pred HH
Q 004567 262 AR 263 (744)
Q Consensus 262 a~ 263 (744)
+.
T Consensus 133 ~~ 134 (196)
T PF00448_consen 133 AL 134 (196)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 218
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.05 E-value=0.08 Score=58.64 Aligned_cols=129 Identities=14% Similarity=0.118 Sum_probs=67.4
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEc--CChHHHHHHHHHHHHhhccCCceEEEEEcCccChHH
Q 004567 104 RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIIS--PTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDM 181 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~--PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~ 181 (744)
+.+++.||||+|||.....-+. .+.. .|.++.++. |.|.-+ .+.++.++...++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~-~L~~------~GkkVglI~aDt~RiaA---vEQLk~yae~lgipv------------ 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAW-QFHG------KKKTVGFITTDHSRIGT---VQQLQDYVKTIGFEV------------ 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHH-HHHH------cCCcEEEEecCCcchHH---HHHHHHHhhhcCCcE------------
Confidence 4578999999999986333322 2322 244444444 334222 222333333222221
Q ss_pred HHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhc-cchHHHHHHHHHhCCCCCcEEEEeeccCh-hHH
Q 004567 182 EKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILD-VGFKKALNAIVSQLPKHRQTFLFSATQTK-SVQ 259 (744)
Q Consensus 182 e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld-~gf~~~l~~Il~~lp~~~q~ll~SAT~~~-~v~ 259 (744)
+.+.+|..+.+.+..... ..++++|+||-+=+... ...-..+..++....+..-++.+|||... ...
T Consensus 300 ---------~v~~d~~~L~~aL~~lk~--~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~ 368 (436)
T PRK11889 300 ---------IAVRDEAAMTRALTYFKE--EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMI 368 (436)
T ss_pred ---------EecCCHHHHHHHHHHHHh--ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHH
Confidence 123367777666543211 12578899998876543 22344455555544444446668987553 445
Q ss_pred HHHHHh
Q 004567 260 DLARLS 265 (744)
Q Consensus 260 ~la~~~ 265 (744)
.++..+
T Consensus 369 ~i~~~F 374 (436)
T PRK11889 369 EIITNF 374 (436)
T ss_pred HHHHHh
Confidence 555544
No 219
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.85 E-value=0.1 Score=54.60 Aligned_cols=106 Identities=20% Similarity=0.336 Sum_probs=58.0
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHH
Q 004567 104 RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEK 183 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~ 183 (744)
..+++.|++|+|||.. +..+...+.. .|..++++ +..+|.. .++.... .. .
T Consensus 100 ~~~~l~G~~GtGKThL-a~aia~~l~~------~g~~v~~i-t~~~l~~----~l~~~~~---------~~-~------- 150 (244)
T PRK07952 100 ASFIFSGKPGTGKNHL-AAAICNELLL------RGKSVLII-TVADIMS----AMKDTFS---------NS-E------- 150 (244)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHHHHh------cCCeEEEE-EHHHHHH----HHHHHHh---------hc-c-------
Confidence 4689999999999985 3444444433 25556665 3333332 2222100 00 0
Q ss_pred HhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHH-HHHHHHHhCC-CCCcEEEEeeccCh
Q 004567 184 EHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKK-ALNAIVSQLP-KHRQTFLFSATQTK 256 (744)
Q Consensus 184 ~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~-~l~~Il~~lp-~~~q~ll~SAT~~~ 256 (744)
.+...+++. +.++++|||||++......+.. .+..|+.... ....+++.|---+.
T Consensus 151 ----------~~~~~~l~~--------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~ 207 (244)
T PRK07952 151 ----------TSEEQLLND--------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNME 207 (244)
T ss_pred ----------ccHHHHHHH--------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHH
Confidence 123344433 2467899999999876554543 4555665432 34556666554333
No 220
>PHA02533 17 large terminase protein; Provisional
Probab=95.80 E-value=0.14 Score=59.50 Aligned_cols=148 Identities=17% Similarity=0.107 Sum_probs=85.3
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCc
Q 004567 88 KMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNF 167 (744)
Q Consensus 88 ~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~ 167 (744)
.|.|+|...+..+..++-.++..+=..|||.+..+.++...... .+..+++++|++.-|..+++.++.+....+.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~-----~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~ 133 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN-----KDKNVGILAHKASMAAEVLDRTKQAIELLPD 133 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC-----CCCEEEEEeCCHHHHHHHHHHHHHHHHhCHH
Confidence 58999999988776566667888888899997665444333222 3568999999999999999888766543321
Q ss_pred --eEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHhCCC--
Q 004567 168 --SAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPK-- 243 (744)
Q Consensus 168 --~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~-- 243 (744)
....... . .......++..|.+.|-. .....=.++.++||||+|.+.+ +...+..+...+..
T Consensus 134 l~~~~i~~~-~---~~~I~l~NGS~I~~lss~--------~~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~ 199 (534)
T PHA02533 134 FLQPGIVEW-N---KGSIELENGSKIGAYASS--------PDAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGR 199 (534)
T ss_pred Hhhcceeec-C---ccEEEeCCCCEEEEEeCC--------CCccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCC
Confidence 1111111 0 000111234555444421 1111123567899999997654 23333334333332
Q ss_pred CCcEEEEeecc
Q 004567 244 HRQTFLFSATQ 254 (744)
Q Consensus 244 ~~q~ll~SAT~ 254 (744)
..+++++|.+.
T Consensus 200 ~~r~iiiSTp~ 210 (534)
T PHA02533 200 SSKIIITSTPN 210 (534)
T ss_pred CceEEEEECCC
Confidence 23455556553
No 221
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=95.77 E-value=0.054 Score=51.77 Aligned_cols=67 Identities=19% Similarity=0.301 Sum_probs=48.7
Q ss_pred HHHHHHHHHhc-cC---CeEEEccc--cccccccCCC--CcEEEEcCCCCC----H------------------------
Q 004567 351 RRMAIYAQFCE-KR---SVLFCTDV--ASRGLDFNKA--VDWVVQVDCPED----V------------------------ 394 (744)
Q Consensus 351 ~R~~i~~~F~~-~~---~VLVaTdv--~arGlDi~p~--V~~VI~~d~P~s----~------------------------ 394 (744)
....+++.|.. .. .||+++.- ++.|||| |+ +++||.++.|.. +
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~-~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDF-PDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLF 110 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceec-CCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 44688888987 33 69999987 8999999 76 678999888731 1
Q ss_pred ---hHHHHHhhccCcCCCCCeEEEEeC
Q 004567 395 ---ASYIHRVGRTARYNSGGRSVLFLT 418 (744)
Q Consensus 395 ---~~yiQRiGRagR~g~~G~~il~l~ 418 (744)
....|.+||+-|...+--+++++.
T Consensus 111 ~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 111 DAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred HHHHHHHHHhCccccCccceEEEEEEe
Confidence 235788899999866533444443
No 222
>PRK12377 putative replication protein; Provisional
Probab=95.65 E-value=0.22 Score=52.21 Aligned_cols=45 Identities=18% Similarity=0.319 Sum_probs=28.0
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHH
Q 004567 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLF 155 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~ 155 (744)
...+++.|++|+|||.. +..+...+.. .|..++ .++..+|..++.
T Consensus 101 ~~~l~l~G~~GtGKThL-a~AIa~~l~~------~g~~v~-~i~~~~l~~~l~ 145 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHL-AAAIGNRLLA------KGRSVI-VVTVPDVMSRLH 145 (248)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHH------cCCCeE-EEEHHHHHHHHH
Confidence 35799999999999974 3444445433 244444 445556665443
No 223
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.64 E-value=0.12 Score=50.93 Aligned_cols=49 Identities=20% Similarity=0.302 Sum_probs=32.4
Q ss_pred EEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhh
Q 004567 106 ILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162 (744)
Q Consensus 106 vlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~ 162 (744)
+++.|++|+|||...+--+.+.+ ..|..+++++. .+-..++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-------~~g~~v~~~s~-e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-------ARGEPGLYVTL-EESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-------HCCCcEEEEEC-CCCHHHHHHHHHHcC
Confidence 68999999999986444344433 23666888765 455666666666553
No 224
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.52 E-value=0.085 Score=67.72 Aligned_cols=64 Identities=23% Similarity=0.236 Sum_probs=45.5
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHH
Q 004567 88 KMTDIQRASLPHSLCG--RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQL 154 (744)
Q Consensus 88 ~~t~iQ~~aip~il~g--~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi 154 (744)
.+++-|++|+..++.+ +-++++|..|+|||... -.++..+.. +....+..++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l-~~i~~~~~~--l~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF-RAVMSAVNM--LPESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH-HHHHHHHHH--HhhccCceEEEEechHHHHHHH
Confidence 7999999999999976 55889999999999862 222222211 1112456789999997776544
No 225
>PRK08116 hypothetical protein; Validated
Probab=95.51 E-value=0.16 Score=53.87 Aligned_cols=42 Identities=24% Similarity=0.337 Sum_probs=26.0
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHH
Q 004567 104 RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQ 153 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Q 153 (744)
..+++.|++|+|||.. +..+...+... +..++++ +..+|...
T Consensus 115 ~gl~l~G~~GtGKThL-a~aia~~l~~~------~~~v~~~-~~~~ll~~ 156 (268)
T PRK08116 115 VGLLLWGSVGTGKTYL-AACIANELIEK------GVPVIFV-NFPQLLNR 156 (268)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHHHHHc------CCeEEEE-EHHHHHHH
Confidence 3499999999999985 34455555432 4445544 44455443
No 226
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.40 E-value=0.073 Score=60.88 Aligned_cols=91 Identities=22% Similarity=0.225 Sum_probs=62.6
Q ss_pred CCCHHH-HHHHHHCCCCCCcH----HHHHHHHHHHc--CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEE
Q 004567 72 PISKKT-KSGLKDAGFVKMTD----IQRASLPHSLC--GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIII 144 (744)
Q Consensus 72 ~ls~~~-~~~L~~~gf~~~t~----iQ~~aip~il~--g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl 144 (744)
++..++ ...|++.-=..|+. ||.+-=..+.. ++-++++|..|||||.++|--+.-.+|..+-. ..+..+||+
T Consensus 188 ~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~-l~~k~vlvl 266 (747)
T COG3973 188 GGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGP-LQAKPVLVL 266 (747)
T ss_pred chHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccc-cccCceEEE
Confidence 444444 45576654445544 34444333443 34588999999999999888877777765432 344559999
Q ss_pred cCChHHHHHHHHHHHHhhc
Q 004567 145 SPTRELADQLFDVLKAVGK 163 (744)
Q Consensus 145 ~PtreLa~Qi~~~l~~~~~ 163 (744)
.|.+-+..-+..+|-.+|.
T Consensus 267 ~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 267 GPNRVFLEYISRVLPELGE 285 (747)
T ss_pred cCcHHHHHHHHHhchhhcc
Confidence 9999999888888877764
No 227
>PRK08727 hypothetical protein; Validated
Probab=95.38 E-value=0.074 Score=55.17 Aligned_cols=46 Identities=11% Similarity=0.022 Sum_probs=25.0
Q ss_pred CCceEEEEcCchhhhccc-hHHHHHHHHHhCCC-CCcEEEEeeccChh
Q 004567 212 SQLQILILDEADRILDVG-FKKALNAIVSQLPK-HRQTFLFSATQTKS 257 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~g-f~~~l~~Il~~lp~-~~q~ll~SAT~~~~ 257 (744)
.+.++|||||+|.+.... ....+..++..+.. ..++|+.|-..|..
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~ 139 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDG 139 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhh
Confidence 345689999999876432 33344455554432 23444444444433
No 228
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.38 E-value=0.12 Score=67.31 Aligned_cols=63 Identities=19% Similarity=0.156 Sum_probs=45.8
Q ss_pred CCcHHHHHHHHHHHcCC--CEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHH
Q 004567 88 KMTDIQRASLPHSLCGR--DILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQ 153 (744)
Q Consensus 88 ~~t~iQ~~aip~il~g~--dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Q 153 (744)
.+++.|+.|+..++.+. -+++.|..|+|||.. +-.++..+.. .....+..++.++||-.-|..
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~--l~~~~~~~V~glAPTgrAAk~ 1031 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNT--LPESERPRVVGLGPTHRAVGE 1031 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHH--hhcccCceEEEECCcHHHHHH
Confidence 79999999999999864 488999999999985 3344443321 111245678899999876654
No 229
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.30 E-value=0.45 Score=53.57 Aligned_cols=130 Identities=13% Similarity=0.154 Sum_probs=63.8
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHH
Q 004567 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDME 182 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e 182 (744)
|.-+.+.||||+|||.....-+-..+... ......++.+.+.-.+. .+.+..++..+++.+..+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~----~~~~v~~i~~d~~riga--lEQL~~~a~ilGvp~~~v---------- 254 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRH----GADKVALLTTDSYRIGG--HEQLRIYGKLLGVSVRSI---------- 254 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc----CCCeEEEEecCCcchhH--HHHHHHHHHHcCCceecC----------
Confidence 44578999999999987432222222221 11233566666644432 344555555444443222
Q ss_pred HHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhh-ccchHHHHHHHHHhCCCCCcEEEEeeccChh-HHH
Q 004567 183 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRIL-DVGFKKALNAIVSQLPKHRQTFLFSATQTKS-VQD 260 (744)
Q Consensus 183 ~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~ll-d~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~-v~~ 260 (744)
-++..+...+.. +.+.++++||.+-+.- +......+..+....+....++.+|||.... +..
T Consensus 255 -----------~~~~dl~~al~~-----l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~ 318 (420)
T PRK14721 255 -----------KDIADLQLMLHE-----LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDE 318 (420)
T ss_pred -----------CCHHHHHHHHHH-----hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHH
Confidence 123333222221 2455778888763322 1112333444333233345578899996544 343
Q ss_pred HHHH
Q 004567 261 LARL 264 (744)
Q Consensus 261 la~~ 264 (744)
....
T Consensus 319 ~~~~ 322 (420)
T PRK14721 319 VISA 322 (420)
T ss_pred HHHH
Confidence 4433
No 230
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.30 E-value=0.069 Score=61.46 Aligned_cols=150 Identities=18% Similarity=0.149 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHc-----C----CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHh
Q 004567 91 DIQRASLPHSLC-----G----RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAV 161 (744)
Q Consensus 91 ~iQ~~aip~il~-----g----~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~ 161 (744)
|||.-.+-.++. | +.+++.-+=|.|||......++-.++-. ...+..+++++++++-|..+++.+..+
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~---g~~~~~i~~~A~~~~QA~~~f~~~~~~ 77 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD---GEPGAEIYCAANTRDQAKIVFDEAKKM 77 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC---CccCceEEEEeCCHHHHHHHHHHHHHH
Confidence 678877777662 2 3588888999999986444444444322 245678999999999999999999887
Q ss_pred hccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcC-CCCCCCCceEEEEcCchhhhccchHHHHHHHHHh
Q 004567 162 GKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDET-PNFDCSQLQILILDEADRILDVGFKKALNAIVSQ 240 (744)
Q Consensus 162 ~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~-~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~ 240 (744)
....+...... + . .......-.|.....+.++..+... ...+=.+..++|+||+|.+-+......+..-...
T Consensus 78 i~~~~~l~~~~-~-~-----~~~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~ 150 (477)
T PF03354_consen 78 IEASPELRKRK-K-P-----KIIKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGA 150 (477)
T ss_pred HHhChhhccch-h-h-----hhhhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhcc
Confidence 75422211000 0 0 0000111222222222222222221 1222235689999999988765445555444444
Q ss_pred CCCCCcEEEEe
Q 004567 241 LPKHRQTFLFS 251 (744)
Q Consensus 241 lp~~~q~ll~S 251 (744)
. .+.+++.+|
T Consensus 151 r-~~pl~~~IS 160 (477)
T PF03354_consen 151 R-PNPLIIIIS 160 (477)
T ss_pred C-CCceEEEEe
Confidence 3 345555543
No 231
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.28 E-value=0.31 Score=55.17 Aligned_cols=128 Identities=20% Similarity=0.214 Sum_probs=66.2
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEc--CChHHHHHHHHHHHHhhccCCceEEEEEcCccChH
Q 004567 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIIS--PTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVD 180 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~--PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~ 180 (744)
|+.+++.||||+|||.+..--+. .+... ..|.++.+|. |.|.-+ .+.+..++...++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~-~~~~~----~~g~~V~li~~D~~r~~a---~eqL~~~a~~~~vp~----------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA-RYALL----YGKKKVALITLDTYRIGA---VEQLKTYAKIMGIPV----------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-HHHHh----cCCCeEEEEECCccHHHH---HHHHHHHHHHhCCce-----------
Confidence 45688999999999986332222 22100 1234444443 233322 234444443333322
Q ss_pred HHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhh-ccchHHHHHHHHHh-CCCCCcEEEEeeccChh-
Q 004567 181 MEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRIL-DVGFKKALNAIVSQ-LPKHRQTFLFSATQTKS- 257 (744)
Q Consensus 181 ~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~ll-d~gf~~~l~~Il~~-lp~~~q~ll~SAT~~~~- 257 (744)
..+.++..+...+... .+.++||||-+-+.. +......+..++.. .......+++|||....
T Consensus 282 ----------~~~~~~~~l~~~l~~~-----~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~ 346 (424)
T PRK05703 282 ----------EVVYDPKELAKALEQL-----RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYED 346 (424)
T ss_pred ----------EccCCHHhHHHHHHHh-----CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHH
Confidence 1223555555555432 357899999886533 22234456666652 22234578899987653
Q ss_pred HHHHHHH
Q 004567 258 VQDLARL 264 (744)
Q Consensus 258 v~~la~~ 264 (744)
+..+...
T Consensus 347 l~~~~~~ 353 (424)
T PRK05703 347 LKDIYKH 353 (424)
T ss_pred HHHHHHH
Confidence 3344433
No 232
>PRK05642 DNA replication initiation factor; Validated
Probab=95.23 E-value=0.097 Score=54.35 Aligned_cols=44 Identities=23% Similarity=0.418 Sum_probs=29.5
Q ss_pred CceEEEEcCchhhhcc-chHHHHHHHHHhCCCCCcEEEEeeccCh
Q 004567 213 QLQILILDEADRILDV-GFKKALNAIVSQLPKHRQTFLFSATQTK 256 (744)
Q Consensus 213 ~l~~lVlDEAh~lld~-gf~~~l~~Il~~lp~~~q~ll~SAT~~~ 256 (744)
+.++||||++|.+... .+...+..++..+......+++++|.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 4578999999977543 3456677777766554445666776544
No 233
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.21 E-value=0.07 Score=63.90 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=51.7
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhh
Q 004567 87 VKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162 (744)
Q Consensus 87 ~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~ 162 (744)
..+++-|++|+-. ...+++|.|..|||||.+.+.-+. .|+... ...+..+|+++.|+..|..+.+.+....
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~a-yLl~~~--~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAG-WLLARG--QAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHH-HHHHhC--CCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 4799999999843 335689999999999998444443 333321 1235679999999999998888776543
No 234
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.17 E-value=0.061 Score=58.03 Aligned_cols=79 Identities=25% Similarity=0.257 Sum_probs=53.3
Q ss_pred CcCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCC-CEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCce
Q 004567 62 YVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGR-DILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVG 140 (744)
Q Consensus 62 ~~~~~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~-dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~ 140 (744)
..+..+|..-+++ +..| ..|..+++-|...+..+..++ |+|++|.||||||.. +-++.... ...-+
T Consensus 136 ~lsIRKf~k~~lt---l~dl--i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl--LNal~~~i------~~~eR 202 (355)
T COG4962 136 TLSIRKFPKIKLT---LLDL--IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL--LNALSGFI------DSDER 202 (355)
T ss_pred ccccccccccccc---HHHH--HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH--HHHHHhcC------CCccc
Confidence 3445556554443 2333 355679999999999888876 999999999999984 33332221 12337
Q ss_pred EEEEcCChHHHHH
Q 004567 141 SIIISPTRELADQ 153 (744)
Q Consensus 141 aLIl~PtreLa~Q 153 (744)
+|+|--|.||-.+
T Consensus 203 vItiEDtaELql~ 215 (355)
T COG4962 203 VITIEDTAELQLA 215 (355)
T ss_pred EEEEeehhhhccC
Confidence 8998888887643
No 235
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.06 E-value=0.13 Score=58.82 Aligned_cols=44 Identities=9% Similarity=0.212 Sum_probs=26.3
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHH
Q 004567 104 RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQ 153 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Q 153 (744)
..+++.|++|+|||.. +-.+...+... ..+..++++. ...+..+
T Consensus 149 ~~l~l~G~~G~GKThL-~~ai~~~~~~~----~~~~~v~yi~-~~~~~~~ 192 (450)
T PRK00149 149 NPLFIYGGVGLGKTHL-LHAIGNYILEK----NPNAKVVYVT-SEKFTND 192 (450)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHHh----CCCCeEEEEE-HHHHHHH
Confidence 4589999999999985 33444444332 2245566664 3445443
No 236
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.05 E-value=0.11 Score=66.68 Aligned_cols=124 Identities=17% Similarity=0.177 Sum_probs=78.6
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCc
Q 004567 88 KMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNF 167 (744)
Q Consensus 88 ~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~ 167 (744)
++|+-|.++|. ..+++++|.|..|||||.+.+--++..+... .+-.++|+|+=|+..|..+.+.+.......--
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~----~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~ 74 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG----VDIDRLLVVTFTNAAAREMKERIEEALQKALQ 74 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC----CCHhhEEEEeccHHHHHHHHHHHHHHHHHHHh
Confidence 36899999996 4688999999999999998666666665432 22245899999999999888887764422100
Q ss_pred eEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCc--eEEEEcCchh
Q 004567 168 SAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQL--QILILDEADR 224 (744)
Q Consensus 168 ~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l--~~lVlDEAh~ 224 (744)
..............-...-|+|-..+...+.+.-.+. -+| .+=|+||...
T Consensus 75 ------~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~-l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 75 ------QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYL-LDLDPSFRILTDTEQ 126 (1232)
T ss_pred ------cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhh-cCCCCCceeCCHHHH
Confidence 0011111111222234667899999876665442221 111 3345888774
No 237
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.03 E-value=0.046 Score=65.54 Aligned_cols=70 Identities=14% Similarity=0.067 Sum_probs=52.6
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhh
Q 004567 88 KMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162 (744)
Q Consensus 88 ~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~ 162 (744)
.+++-|++|+.. ....++|.|..|||||.+...-+...+.... .+..++|+|+.|+..|.++.+.+....
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~---v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG---YQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC---CCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 489999999865 3467899999999999985555544442222 234679999999999999888887654
No 238
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.01 E-value=0.1 Score=53.34 Aligned_cols=42 Identities=14% Similarity=0.305 Sum_probs=24.4
Q ss_pred ceEEEEcCchhhhcc-chHHHHHHHHHhCCCCCcEEEEeeccC
Q 004567 214 LQILILDEADRILDV-GFKKALNAIVSQLPKHRQTFLFSATQT 255 (744)
Q Consensus 214 l~~lVlDEAh~lld~-gf~~~l~~Il~~lp~~~q~ll~SAT~~ 255 (744)
..+|||||+|.+... .....+..++..+......+++|++.+
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 368999999987643 234555555554332223455666643
No 239
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=94.99 E-value=0.2 Score=56.27 Aligned_cols=73 Identities=19% Similarity=0.196 Sum_probs=43.0
Q ss_pred CCCCCcHHHHHHHHH---HH-cCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHH
Q 004567 85 GFVKMTDIQRASLPH---SL-CGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKA 160 (744)
Q Consensus 85 gf~~~t~iQ~~aip~---il-~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~ 160 (744)
.|...+|-|-.-... .| .+.+.++..|+|+|||.+.|..++...... +....+.|+.+-|..-.......++.
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~---p~~~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHY---PDEHRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhC---CcccceEEEecCcchHHHHHHHHHHH
Confidence 455677777655433 22 356799999999999998555554433222 12344566766665444444444444
No 240
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.97 E-value=0.45 Score=52.74 Aligned_cols=123 Identities=20% Similarity=0.225 Sum_probs=70.1
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHH
Q 004567 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDME 182 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e 182 (744)
++-+.+.||||-|||.+ ++=|...|.. ......-+||-+-|--.+. .+.|+.++.-+++.+..+
T Consensus 203 ~~vi~LVGPTGVGKTTT--lAKLAar~~~--~~~~~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~~vv---------- 266 (407)
T COG1419 203 KRVIALVGPTGVGKTTT--LAKLAARYVM--LKKKKKVAIITTDTYRIGA--VEQLKTYADIMGVPLEVV---------- 266 (407)
T ss_pred CcEEEEECCCCCcHHHH--HHHHHHHHHh--hccCcceEEEEeccchhhH--HHHHHHHHHHhCCceEEe----------
Confidence 66788999999999987 2222222220 0123344677777655543 456666666555554333
Q ss_pred HHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhh-ccchHHHHHHHHHhCCCCCcEEEEeeccChh
Q 004567 183 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRIL-DVGFKKALNAIVSQLPKHRQTFLFSATQTKS 257 (744)
Q Consensus 183 ~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~ll-d~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~ 257 (744)
-+|.-|.+.+.. +.+.++|.+|=|-+-. |......+..++......--.+.+|||....
T Consensus 267 -----------~~~~el~~ai~~-----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~ 326 (407)
T COG1419 267 -----------YSPKELAEAIEA-----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYE 326 (407)
T ss_pred -----------cCHHHHHHHHHH-----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchH
Confidence 345555554442 2455777777655322 2224455566665554445577889996544
No 241
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.95 E-value=0.27 Score=58.66 Aligned_cols=40 Identities=20% Similarity=0.448 Sum_probs=25.9
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeec
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 253 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT 253 (744)
...+++||||+|+|....| ..+.++++.-+.+..+|+ .+|
T Consensus 118 gr~KVIIIDEah~LT~~A~-NALLKtLEEPP~~v~FIL-aTt 157 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF-NAMLKTLEEPPPHVKFIL-ATT 157 (830)
T ss_pred CCceEEEEeChhhCCHHHH-HHHHHHHHhcCCCeEEEE-EEC
Confidence 4678999999998876554 344556666555554444 444
No 242
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.90 E-value=0.14 Score=59.23 Aligned_cols=39 Identities=21% Similarity=0.405 Sum_probs=27.0
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEe
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 251 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~S 251 (744)
...+++||||+|+|....| ..+..+++..|....+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4678999999998876554 44556667666666555544
No 243
>PRK06893 DNA replication initiation factor; Validated
Probab=94.88 E-value=0.094 Score=54.24 Aligned_cols=46 Identities=15% Similarity=0.310 Sum_probs=29.8
Q ss_pred CCceEEEEcCchhhhc-cchHHHHHHHHHhCCC-CCcEEEEeeccChh
Q 004567 212 SQLQILILDEADRILD-VGFKKALNAIVSQLPK-HRQTFLFSATQTKS 257 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld-~gf~~~l~~Il~~lp~-~~q~ll~SAT~~~~ 257 (744)
.+.++|||||+|.+.. ..+...+..++..+.. ..+++++|++.++.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 4567999999998763 3344456666655543 34567788876543
No 244
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.87 E-value=0.21 Score=57.06 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=58.9
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHH
Q 004567 104 RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEK 183 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~ 183 (744)
..+++.|++|+|||.. +..+...+... ..+.+++++.+ .++...+...+..- .
T Consensus 142 npl~i~G~~G~GKTHL-l~Ai~~~l~~~----~~~~~v~yv~~-~~f~~~~~~~l~~~--------------~------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHL-LKAAKNYIESN----FSDLKVSYMSG-DEFARKAVDILQKT--------------H------- 194 (450)
T ss_pred CceEEECCCCCcHHHH-HHHHHHHHHHh----CCCCeEEEEEH-HHHHHHHHHHHHHh--------------h-------
Confidence 3488999999999964 33444433322 23566666655 55665544443220 0
Q ss_pred HhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhcc-chHHHHHHHHHhCCC-CCcEEEEeeccChhH
Q 004567 184 EHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDV-GFKKALNAIVSQLPK-HRQTFLFSATQTKSV 258 (744)
Q Consensus 184 ~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~-gf~~~l~~Il~~lp~-~~q~ll~SAT~~~~v 258 (744)
.+...+... ..+.++|||||+|.+... .....+..++..+.. ..|+|+.|-..|...
T Consensus 195 ----------~~~~~~~~~--------~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 ----------KEIEQFKNE--------ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred ----------hHHHHHHHH--------hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 011112111 246679999999987632 233445555544432 345665555554433
No 245
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.85 E-value=0.085 Score=57.33 Aligned_cols=68 Identities=21% Similarity=0.245 Sum_probs=46.4
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHc-CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHH
Q 004567 77 TKSGLKDAGFVKMTDIQRASLPHSLC-GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELA 151 (744)
Q Consensus 77 ~~~~L~~~gf~~~t~iQ~~aip~il~-g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa 151 (744)
.+..|...|. +++.|...+..+.. +.++|++|+||||||.. +-.++..+... ..+.++++|=.+.||.
T Consensus 119 tl~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~----~~~~rivtiEd~~El~ 187 (323)
T PRK13833 119 PLDDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVAS----APEDRLVILEDTAEIQ 187 (323)
T ss_pred CHHHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcC----CCCceEEEecCCcccc
Confidence 3445566666 77888887766554 67899999999999984 44455444221 2345778888888874
No 246
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.79 E-value=0.083 Score=57.42 Aligned_cols=70 Identities=29% Similarity=0.363 Sum_probs=48.4
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHH-cCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHH
Q 004567 75 KKTKSGLKDAGFVKMTDIQRASLPHSL-CGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELA 151 (744)
Q Consensus 75 ~~~~~~L~~~gf~~~t~iQ~~aip~il-~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa 151 (744)
...+..|...|+ +++.|...+..+. .+++++++|+||||||. ++-.++..+... ....++++|-.+.||.
T Consensus 121 ~~tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~----~~~~rivtIEd~~El~ 191 (319)
T PRK13894 121 IFTLDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQ----DPTERVFIIEDTGEIQ 191 (319)
T ss_pred CCCHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhc----CCCceEEEEcCCCccc
Confidence 344566667776 6788888887544 56889999999999996 445555443211 2345788888888874
No 247
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.75 E-value=0.21 Score=57.37 Aligned_cols=41 Identities=24% Similarity=0.425 Sum_probs=25.3
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeecc
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQ 254 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~ 254 (744)
...+++||||+|++....| ..+...++.-|....+++ .+|-
T Consensus 115 ~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIl-atte 155 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFIL-ATTE 155 (491)
T ss_pred CCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEE-EeCC
Confidence 5788999999998866443 344455555454444444 4453
No 248
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.75 E-value=0.09 Score=57.44 Aligned_cols=35 Identities=14% Similarity=-0.005 Sum_probs=27.1
Q ss_pred CCcHHHHHHHHHHHcCC----CEEEEccCCCchhHHhHH
Q 004567 88 KMTDIQRASLPHSLCGR----DILGAAKTGSGKTLAFVI 122 (744)
Q Consensus 88 ~~t~iQ~~aip~il~g~----dvlv~a~TGSGKTla~ll 122 (744)
.++|||...+..++... -+|+.||.|.|||..+..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~ 41 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER 41 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH
Confidence 45799999998877642 378999999999986433
No 249
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.68 E-value=0.21 Score=51.36 Aligned_cols=106 Identities=18% Similarity=0.277 Sum_probs=59.5
Q ss_pred EEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHh
Q 004567 106 ILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEH 185 (744)
Q Consensus 106 vlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~ 185 (744)
+++.|++|+|||.- +-.+...+... ..+.+++++... +....+...++. +
T Consensus 37 l~l~G~~G~GKTHL-L~Ai~~~~~~~----~~~~~v~y~~~~-~f~~~~~~~~~~-------------~----------- 86 (219)
T PF00308_consen 37 LFLYGPSGLGKTHL-LQAIANEAQKQ----HPGKRVVYLSAE-EFIREFADALRD-------------G----------- 86 (219)
T ss_dssp EEEEESTTSSHHHH-HHHHHHHHHHH----CTTS-EEEEEHH-HHHHHHHHHHHT-------------T-----------
T ss_pred eEEECCCCCCHHHH-HHHHHHHHHhc----cccccceeecHH-HHHHHHHHHHHc-------------c-----------
Confidence 88999999999983 44444444332 235556666543 333332222221 0
Q ss_pred cCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccc-hHHHHHHHHHhCC-CCCcEEEEeeccChhH
Q 004567 186 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG-FKKALNAIVSQLP-KHRQTFLFSATQTKSV 258 (744)
Q Consensus 186 ~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~g-f~~~l~~Il~~lp-~~~q~ll~SAT~~~~v 258 (744)
+...+.+.+ ...++||||.+|.+.+.. ....+..++..+. ...++|+.|...|..+
T Consensus 87 ---------~~~~~~~~~--------~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 87 ---------EIEEFKDRL--------RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp ---------SHHHHHHHH--------CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred ---------cchhhhhhh--------hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 122232222 467899999999987642 4556666665553 3456666666666543
No 250
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.67 E-value=0.18 Score=56.82 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=24.4
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcC
Q 004567 104 RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISP 146 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~P 146 (744)
..+++.|++|+|||.. +..+...+... ..+..++++..
T Consensus 137 n~l~l~G~~G~GKThL-~~ai~~~l~~~----~~~~~v~yi~~ 174 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHL-LHAIGNEILEN----NPNAKVVYVSS 174 (405)
T ss_pred CeEEEECCCCCcHHHH-HHHHHHHHHHh----CCCCcEEEEEH
Confidence 3478999999999985 34444444332 23566777643
No 251
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.67 E-value=0.19 Score=61.26 Aligned_cols=39 Identities=33% Similarity=0.473 Sum_probs=28.0
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEe
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 251 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~S 251 (744)
...+++||||||+|.... ...|.++++..+....+||.+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 567899999999987654 446667777776666555544
No 252
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=94.64 E-value=0.15 Score=61.25 Aligned_cols=90 Identities=13% Similarity=0.031 Sum_probs=63.2
Q ss_pred CcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCce
Q 004567 89 MTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFS 168 (744)
Q Consensus 89 ~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~ 168 (744)
+++-|++++.. ...+++|.|..|||||.+.+--+...+.... .+...+|+|+.|+..|.++.+.+.......
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~---~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~--- 73 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG---YKARNIAAVTFTNKAAREMKERVAKTLGKG--- 73 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC---CCHHHeEEEeccHHHHHHHHHHHHHHhCcc---
Confidence 78999999854 3568999999999999985555554443222 234669999999999999888887654210
Q ss_pred EEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHh
Q 004567 169 AGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMD 204 (744)
Q Consensus 169 ~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~ 204 (744)
...++.|+|-.+|...+.
T Consensus 74 ------------------~~~~v~v~TfHs~a~~il 91 (664)
T TIGR01074 74 ------------------EARGLTISTFHTLGLDII 91 (664)
T ss_pred ------------------ccCCeEEEeHHHHHHHHH
Confidence 113577888888765443
No 253
>PRK06921 hypothetical protein; Provisional
Probab=94.61 E-value=0.54 Score=49.82 Aligned_cols=43 Identities=23% Similarity=0.245 Sum_probs=26.8
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHH
Q 004567 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELAD 152 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~ 152 (744)
+..+++.|++|+|||.. +..+...+... .|..++++. ..++..
T Consensus 117 ~~~l~l~G~~G~GKThL-a~aia~~l~~~-----~g~~v~y~~-~~~l~~ 159 (266)
T PRK06921 117 KNSIALLGQPGSGKTHL-LTAAANELMRK-----KGVPVLYFP-FVEGFG 159 (266)
T ss_pred CCeEEEECCCCCcHHHH-HHHHHHHHhhh-----cCceEEEEE-HHHHHH
Confidence 56799999999999974 34444444321 155566655 334443
No 254
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.52 E-value=0.18 Score=59.15 Aligned_cols=39 Identities=18% Similarity=0.427 Sum_probs=25.7
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEe
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 251 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~S 251 (744)
...+++||||+|+|....+. .+.++++.-+.+..+||.|
T Consensus 123 gr~KViIIDEah~Ls~~AaN-ALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFN-AMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred CCceEEEEEChHhcCHHHHH-HHHHhhccCCCCceEEEEe
Confidence 56789999999998765543 3444555555556555544
No 255
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=94.49 E-value=0.17 Score=56.72 Aligned_cols=147 Identities=13% Similarity=0.212 Sum_probs=80.9
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChH-HHHHHHHHHHHhhccCCceEEEEEcCccChHHHH
Q 004567 105 DILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRE-LADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEK 183 (744)
Q Consensus 105 dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~Ptre-La~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~ 183 (744)
-.++.|..|||||.+..+-++..++.. ..+..++|+-|+.. |..-++..+.......++....-.. .... ..
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~----~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~-~~~~--~i 75 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN----KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKS-KSSM--EI 75 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc----CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeec-CCcc--EE
Confidence 367899999999999887777776653 14577899999876 6666667776655544433111111 1100 00
Q ss_pred HhcC-CCcEEEECh-HHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHH
Q 004567 184 EHVN-ELNILVCTP-GRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDL 261 (744)
Q Consensus 184 ~~~~-~~~IlV~TP-grLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~l 261 (744)
.... +..|++..- +... .+ .....+.++.+|||..+....|...+.. ++. +.....+++|.|+.....-+
T Consensus 76 ~~~~~g~~i~f~g~~d~~~-~i-----k~~~~~~~~~idEa~~~~~~~~~~l~~r-lr~-~~~~~~i~~t~NP~~~~~w~ 147 (396)
T TIGR01547 76 KILNTGKKFIFKGLNDKPN-KL-----KSGAGIAIIWFEEASQLTFEDIKELIPR-LRE-TGGKKFIIFSSNPESPLHWV 147 (396)
T ss_pred EecCCCeEEEeecccCChh-Hh-----hCcceeeeehhhhhhhcCHHHHHHHHHH-hhc-cCCccEEEEEcCcCCCccHH
Confidence 0111 334555442 1111 11 1123468999999998754433333323 222 22223588999987644444
Q ss_pred HHHhc
Q 004567 262 ARLSL 266 (744)
Q Consensus 262 a~~~l 266 (744)
...+.
T Consensus 148 ~~~f~ 152 (396)
T TIGR01547 148 KKRFI 152 (396)
T ss_pred HHHHH
Confidence 44443
No 256
>PLN03025 replication factor C subunit; Provisional
Probab=94.48 E-value=0.44 Score=51.82 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=26.5
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeec
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 253 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT 253 (744)
....++||||+|.|.... ...+..+++..+....++ |+++
T Consensus 98 ~~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~i-l~~n 137 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFA-LACN 137 (319)
T ss_pred CCeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEE-EEeC
Confidence 357899999999886543 555666666655555444 4444
No 257
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.47 E-value=0.11 Score=56.09 Aligned_cols=71 Identities=34% Similarity=0.398 Sum_probs=47.4
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHHc-CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHH
Q 004567 74 SKKTKSGLKDAGFVKMTDIQRASLPHSLC-GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELA 151 (744)
Q Consensus 74 s~~~~~~L~~~gf~~~t~iQ~~aip~il~-g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa 151 (744)
....+..|...|. +++-|...+..+.. +++++++|+||||||.. +-.++..+-.. ..+.++++|-.+.||.
T Consensus 104 ~~~tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~----~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 104 AVFTLDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKN----DPTDRVVIIEDTRELQ 175 (299)
T ss_pred CCCCHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhcc----CCCceEEEECCchhhc
Confidence 3445666767775 66667777665554 57899999999999984 34444443211 1246788888888874
No 258
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.44 E-value=0.22 Score=53.85 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=27.5
Q ss_pred CceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEe
Q 004567 213 QLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 251 (744)
Q Consensus 213 ~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~S 251 (744)
..++|||||+|.+........+..++...+...++++.|
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 457899999998844445566777777777666666543
No 259
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.43 E-value=1.5 Score=50.62 Aligned_cols=119 Identities=14% Similarity=0.175 Sum_probs=58.6
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEc--CChHHHHHHHHHHHHhhccCCceEEEEEcCccCh
Q 004567 102 CGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIIS--PTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDV 179 (744)
Q Consensus 102 ~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~--PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~ 179 (744)
.|+.++++|+||+|||.....-+.. +... ..+.++.++. +.|.-+. +.+..++...++.+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~-la~~----~~gkkVaLIdtDtyRigA~---EQLk~ya~iLgv~v~~-------- 412 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQR-FAAQ----HAPRDVALVTTDTQRVGGR---EQLHSYGRQLGIAVHE-------- 412 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH-HHHh----cCCCceEEEecccccccHH---HHHHHhhcccCceeEe--------
Confidence 3567889999999999864222221 2111 1123344443 2343332 2333333333332211
Q ss_pred HHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhc-cchHHHHHHHHHhCCCCCcEEEEeeccC
Q 004567 180 DMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILD-VGFKKALNAIVSQLPKHRQTFLFSATQT 255 (744)
Q Consensus 180 ~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld-~gf~~~l~~Il~~lp~~~q~ll~SAT~~ 255 (744)
+.+++.+...+... .+.++||||.+-+... ......+..+.... ....+++++++..
T Consensus 413 -------------a~d~~~L~~aL~~l-----~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss 470 (559)
T PRK12727 413 -------------ADSAESLLDLLERL-----RDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAH 470 (559)
T ss_pred -------------cCcHHHHHHHHHHh-----ccCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCC
Confidence 12344555555432 4578999999975432 11222333333222 3345777888764
No 260
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.36 E-value=0.81 Score=53.75 Aligned_cols=47 Identities=19% Similarity=0.293 Sum_probs=28.9
Q ss_pred CCceEEEEcCchhhhccc-hHHHHHHHHHhCCC-CCcEEEEeeccChhH
Q 004567 212 SQLQILILDEADRILDVG-FKKALNAIVSQLPK-HRQTFLFSATQTKSV 258 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~g-f~~~l~~Il~~lp~-~~q~ll~SAT~~~~v 258 (744)
.++++||||++|.+.... ....+..+++.+.. ..++|+.|-..+..+
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 456899999999886532 33445555555543 456776555555444
No 261
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=94.35 E-value=0.016 Score=68.12 Aligned_cols=62 Identities=16% Similarity=0.244 Sum_probs=52.5
Q ss_pred CCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc----cCCeEEEccccccc
Q 004567 311 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE----KRSVLFCTDVASRG 375 (744)
Q Consensus 311 ~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~----~~~VLVaTdv~arG 375 (744)
+.+++||..-....+-+..++... + ....+.|..+...|+..+.+|.. ...+|+||...+.|
T Consensus 631 ghrvl~~~q~~~~ldlled~~~~~--~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 631 GHRVLIFSQMIHMLDLLEDYLTYE--G-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred chhhHHHHHHHHHHHHhHHHHhcc--C-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 678999999988888888888764 4 67789999999999999999985 56789999887655
No 262
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.34 E-value=0.21 Score=53.94 Aligned_cols=39 Identities=26% Similarity=0.475 Sum_probs=25.3
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEe
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 251 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~S 251 (744)
....++||||||.|.. +-...+...+..-+.+..+++.+
T Consensus 108 ~~~kviiidead~mt~-~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 108 GGYKVVIIDEADKLTE-DAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCceEEEeCcHHHHhH-HHHHHHHHHhccCCCCeEEEEEc
Confidence 6789999999998865 23455555555555455444444
No 263
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.24 E-value=0.18 Score=53.19 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=14.4
Q ss_pred CCEEEEccCCCchhHH
Q 004567 104 RDILGAAKTGSGKTLA 119 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla 119 (744)
.++++.||+|+|||..
T Consensus 43 ~~vll~GppGtGKTtl 58 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTV 58 (261)
T ss_pred ceEEEEcCCCCCHHHH
Confidence 5789999999999986
No 264
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.17 E-value=1.9 Score=45.76 Aligned_cols=130 Identities=15% Similarity=0.109 Sum_probs=68.1
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEE-EEcCC-h-HHHHHHHHHHHHhhccCCceEEEEEcCccC
Q 004567 102 CGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSI-IISPT-R-ELADQLFDVLKAVGKHHNFSAGLLIGGRRD 178 (744)
Q Consensus 102 ~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aL-Il~Pt-r-eLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~ 178 (744)
.+..+++.|++|+|||..+..-+.. +.. .+..+. |-+.+ | ..+.|+.. ++...++.+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~-l~~------~~~~v~~i~~D~~ri~~~~ql~~----~~~~~~~~~~-------- 134 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ-FHG------KKKTVGFITTDHSRIGTVQQLQD----YVKTIGFEVI-------- 134 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH-HHH------cCCeEEEEecCCCCHHHHHHHHH----HhhhcCceEE--------
Confidence 3466889999999999865433322 221 133343 33323 2 34444433 3322222221
Q ss_pred hHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhh-ccchHHHHHHHHHhCCCCCcEEEEeeccC-h
Q 004567 179 VDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRIL-DVGFKKALNAIVSQLPKHRQTFLFSATQT-K 256 (744)
Q Consensus 179 ~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~ll-d~gf~~~l~~Il~~lp~~~q~ll~SAT~~-~ 256 (744)
...+|..+.+.+..-. ....++++|||-+=+.. +......+..++....+..-++.+|||.. .
T Consensus 135 -------------~~~~~~~l~~~l~~l~--~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~ 199 (270)
T PRK06731 135 -------------AVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 199 (270)
T ss_pred -------------ecCCHHHHHHHHHHHH--hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH
Confidence 1124555555443211 11457899999887654 23334445555555544444667999864 4
Q ss_pred hHHHHHHHh
Q 004567 257 SVQDLARLS 265 (744)
Q Consensus 257 ~v~~la~~~ 265 (744)
.....++.+
T Consensus 200 d~~~~~~~f 208 (270)
T PRK06731 200 DMIEIITNF 208 (270)
T ss_pred HHHHHHHHh
Confidence 555666554
No 265
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.16 E-value=1.1 Score=49.55 Aligned_cols=19 Identities=42% Similarity=0.410 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchhHHhH
Q 004567 103 GRDILGAAKTGSGKTLAFV 121 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~l 121 (744)
++-++++||||+|||....
T Consensus 206 ~~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLV 224 (407)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4567899999999998643
No 266
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.15 E-value=0.56 Score=56.66 Aligned_cols=41 Identities=22% Similarity=0.337 Sum_probs=23.3
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCC-CCCcEEEEeec
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLP-KHRQTFLFSAT 253 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp-~~~q~ll~SAT 253 (744)
..+.+|||||+|.+...+ ...|..++.... ...+++++..+
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHHHhhccCCeEEEEEec
Confidence 456789999999987642 344444444321 23444444433
No 267
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.12 E-value=0.43 Score=56.58 Aligned_cols=38 Identities=21% Similarity=0.417 Sum_probs=24.7
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEE
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLF 250 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~ 250 (744)
...+++||||||+|....+ ..+.++++.-|....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a~-NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSF-NALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHHH-HHHHHHHHcCCCCeEEEEe
Confidence 4678999999998876543 3444456655555444443
No 268
>PRK09183 transposase/IS protein; Provisional
Probab=94.12 E-value=0.35 Score=51.03 Aligned_cols=21 Identities=24% Similarity=0.166 Sum_probs=17.6
Q ss_pred HHcCCCEEEEccCCCchhHHh
Q 004567 100 SLCGRDILGAAKTGSGKTLAF 120 (744)
Q Consensus 100 il~g~dvlv~a~TGSGKTla~ 120 (744)
+..|.++++.||+|+|||...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa 119 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLA 119 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHH
Confidence 445789999999999999753
No 269
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.08 E-value=0.036 Score=54.80 Aligned_cols=124 Identities=23% Similarity=0.297 Sum_probs=53.7
Q ss_pred EEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhc
Q 004567 107 LGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV 186 (744)
Q Consensus 107 lv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~ 186 (744)
++.|+-|-|||.+.-+.+...+ ......++|.+|+.+-+..+++.+.......++....... .........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~------~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~---~~~~~~~~~ 71 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALI------QKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKR---IGQIIKLRF 71 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSS------S-----EEEE-SS--S-HHHHHCC----------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHH------HhcCceEEEecCCHHHHHHHHHHHHhhccccccccccccc---ccccccccc
Confidence 5789999999987333322211 1123579999999998887777666544433332200000 000001112
Q ss_pred CCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeeccC
Q 004567 187 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQT 255 (744)
Q Consensus 187 ~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~ 255 (744)
.+..|-+..|..+... ....++||||||=.+- -..+..++...+ .++||.|..
T Consensus 72 ~~~~i~f~~Pd~l~~~--------~~~~DlliVDEAAaIp----~p~L~~ll~~~~----~vv~stTi~ 124 (177)
T PF05127_consen 72 NKQRIEFVAPDELLAE--------KPQADLLIVDEAAAIP----LPLLKQLLRRFP----RVVFSTTIH 124 (177)
T ss_dssp -CCC--B--HHHHCCT------------SCEEECTGGGS-----HHHHHHHHCCSS----EEEEEEEBS
T ss_pred ccceEEEECCHHHHhC--------cCCCCEEEEechhcCC----HHHHHHHHhhCC----EEEEEeecc
Confidence 3567888888877321 1245789999998764 455566654433 677788864
No 270
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=94.07 E-value=0.11 Score=63.13 Aligned_cols=71 Identities=20% Similarity=0.184 Sum_probs=53.1
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhh
Q 004567 87 VKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162 (744)
Q Consensus 87 ~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~ 162 (744)
..+++-|++|+... ...++|.|..|||||.+..--+...+.... .+...+|+|+-|+..|.++.+.+..+.
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~---v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVEN---ASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCC---CChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 35999999998643 457999999999999985444443332222 234669999999999999988887764
No 271
>PF13871 Helicase_C_4: Helicase_C-like
Probab=94.05 E-value=0.2 Score=52.99 Aligned_cols=77 Identities=23% Similarity=0.351 Sum_probs=56.1
Q ss_pred HHHHHHhc-cCCeEEEccccccccccCC-------CCcEEEEcCCCCCHhHHHHHhhccCcCCCC-CeEEEEe-C--cch
Q 004567 354 AIYAQFCE-KRSVLFCTDVASRGLDFNK-------AVDWVVQVDCPEDVASYIHRVGRTARYNSG-GRSVLFL-T--PTE 421 (744)
Q Consensus 354 ~i~~~F~~-~~~VLVaTdv~arGlDi~p-------~V~~VI~~d~P~s~~~yiQRiGRagR~g~~-G~~il~l-~--~~e 421 (744)
...+.|.+ ...|+|.|+.++.|+.++. .-++-|.+.+||+++..+|..||+.|.|+. .-.+.++ + +.|
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 45678988 7889999999999999831 134566788999999999999999999883 3334333 2 335
Q ss_pred HHHHHHHHH
Q 004567 422 MKMLEKLRE 430 (744)
Q Consensus 422 ~~~l~~l~~ 430 (744)
..+...+.+
T Consensus 132 ~Rfas~va~ 140 (278)
T PF13871_consen 132 RRFASTVAR 140 (278)
T ss_pred HHHHHHHHH
Confidence 555555444
No 272
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.04 E-value=0.31 Score=56.31 Aligned_cols=20 Identities=30% Similarity=0.195 Sum_probs=16.0
Q ss_pred CCEEEEccCCCchhHHhHHH
Q 004567 104 RDILGAAKTGSGKTLAFVIP 123 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~llp 123 (744)
+.+|++||.|+|||.++.+-
T Consensus 44 ~a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARII 63 (507)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 35899999999999874443
No 273
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.01 E-value=0.46 Score=51.69 Aligned_cols=142 Identities=20% Similarity=0.255 Sum_probs=73.1
Q ss_pred CCCCcHHHHHHHHHHHc----CC---CEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHH
Q 004567 86 FVKMTDIQRASLPHSLC----GR---DILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVL 158 (744)
Q Consensus 86 f~~~t~iQ~~aip~il~----g~---dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l 158 (744)
+..++|||..++..+.. |+ -+|+.||.|+||+..+ ..+...++..... ..+ .|+ .+
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA-~~lA~~LlC~~~~-~~~-----~c~----------~c 64 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVA-LALAEHVLASGPD-PAA-----AQR----------TR 64 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHHhCCCCC-CCC-----cch----------HH
Confidence 35688999999877663 32 3889999999999854 3344444433110 001 111 11
Q ss_pred HHh--hccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHH
Q 004567 159 KAV--GKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNA 236 (744)
Q Consensus 159 ~~~--~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~ 236 (744)
+.+ +.+.++.......+....+ ....|.|-.--.+.+.+...+.. ...+++|||+||.|.... ...+.+
T Consensus 65 ~~~~~g~HPD~~~i~~~p~~~~~k------~~~~I~idqIR~l~~~~~~~p~~--g~~kV~iI~~ae~m~~~A-aNaLLK 135 (319)
T PRK08769 65 QLIAAGTHPDLQLVSFIPNRTGDK------LRTEIVIEQVREISQKLALTPQY--GIAQVVIVDPADAINRAA-CNALLK 135 (319)
T ss_pred HHHhcCCCCCEEEEecCCCccccc------ccccccHHHHHHHHHHHhhCccc--CCcEEEEeccHhhhCHHH-HHHHHH
Confidence 122 2222332221011000000 01123333333344444444333 467899999999986543 555666
Q ss_pred HHHhCCCCCcEEEEeec
Q 004567 237 IVSQLPKHRQTFLFSAT 253 (744)
Q Consensus 237 Il~~lp~~~q~ll~SAT 253 (744)
+++.-|.+..+|+.|..
T Consensus 136 tLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 136 TLEEPSPGRYLWLISAQ 152 (319)
T ss_pred HhhCCCCCCeEEEEECC
Confidence 77776666666666544
No 274
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.97 E-value=0.087 Score=53.70 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=28.2
Q ss_pred CCCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeec
Q 004567 211 CSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 253 (744)
Q Consensus 211 ~~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT 253 (744)
-...++||+||||.|.+ |-...+.+.++-..+..++.+...+
T Consensus 111 ~grhKIiILDEADSMT~-gAQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 111 PGRHKIIILDEADSMTA-GAQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CCceeEEEeeccchhhh-HHHHHHHHHHHHHcccchhhhhhcc
Confidence 35678999999998765 3466666666666555555554444
No 275
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.94 E-value=0.37 Score=54.86 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=24.4
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcC
Q 004567 104 RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISP 146 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~P 146 (744)
..+++.|++|+|||.. +..+...+... ..+..++++..
T Consensus 131 n~l~lyG~~G~GKTHL-l~ai~~~l~~~----~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHL-LQSIGNYVVQN----EPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHH-HHHHHHHHHHh----CCCCeEEEEEH
Confidence 3589999999999985 33444444332 23456777754
No 276
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.94 E-value=0.28 Score=50.97 Aligned_cols=42 Identities=14% Similarity=0.296 Sum_probs=24.7
Q ss_pred ceEEEEcCchhhhc-cchHHHHHHHHHhCCC-CCcEEEEeeccC
Q 004567 214 LQILILDEADRILD-VGFKKALNAIVSQLPK-HRQTFLFSATQT 255 (744)
Q Consensus 214 l~~lVlDEAh~lld-~gf~~~l~~Il~~lp~-~~q~ll~SAT~~ 255 (744)
+++|||||+|.+.. ..+...+..++..+.. ....+++|++.+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~ 141 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRP 141 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCC
Confidence 46899999998864 2345555555555432 222455555544
No 277
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.90 E-value=0.31 Score=51.28 Aligned_cols=49 Identities=24% Similarity=0.391 Sum_probs=33.0
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHH
Q 004567 102 CGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVL 158 (744)
Q Consensus 102 ~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l 158 (744)
++.++++.|++|+|||..+ .++...+.. .|. .++++++.+|+.++...+
T Consensus 104 ~~~nl~l~G~~G~GKThLa-~Ai~~~l~~------~g~-sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLA-IAIGNELLK------AGI-SVLFITAPDLLSKLKAAF 152 (254)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHHH------cCC-eEEEEEHHHHHHHHHHHH
Confidence 6789999999999999864 444444432 234 466667777776554443
No 278
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.89 E-value=0.091 Score=48.39 Aligned_cols=14 Identities=43% Similarity=0.494 Sum_probs=12.7
Q ss_pred EEEEccCCCchhHH
Q 004567 106 ILGAAKTGSGKTLA 119 (744)
Q Consensus 106 vlv~a~TGSGKTla 119 (744)
+++.||.|+|||..
T Consensus 1 ill~G~~G~GKT~l 14 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL 14 (132)
T ss_dssp EEEESSTTSSHHHH
T ss_pred CEEECcCCCCeeHH
Confidence 68999999999985
No 279
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.89 E-value=0.63 Score=51.61 Aligned_cols=38 Identities=24% Similarity=0.423 Sum_probs=23.7
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEE
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLF 250 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~ 250 (744)
....++||||+|.+....+. .+...+...|....+++.
T Consensus 118 ~~~kviIIDEa~~l~~~a~n-aLLk~lEe~~~~~~fIl~ 155 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFN-ALLKTLEEPPQHIKFILA 155 (363)
T ss_pred CCceEEEEEChhhcCHHHHH-HHHHHHhcCCCCeEEEEE
Confidence 46689999999998754433 344445554555545543
No 280
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=93.85 E-value=0.12 Score=62.53 Aligned_cols=71 Identities=21% Similarity=0.163 Sum_probs=53.1
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhh
Q 004567 87 VKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162 (744)
Q Consensus 87 ~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~ 162 (744)
..|++-|++++.. ....++|.|..|||||.+...-+...+.... .+...+|+|+.|+..|..+.+.+..+.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~---v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVEN---ASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC---CCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 4589999999854 3467999999999999985444443332222 234679999999999999888887764
No 281
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=93.85 E-value=0.87 Score=44.41 Aligned_cols=42 Identities=21% Similarity=0.427 Sum_probs=29.8
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeecc
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQ 254 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~ 254 (744)
...+++|||+||.|... -...+.++++.-|.+..++|+|..+
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECCh
Confidence 57899999999987654 3667777778777776666666553
No 282
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.82 E-value=0.51 Score=52.05 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=18.1
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHH
Q 004567 104 RDILGAAKTGSGKTLAFVIPVLEKL 128 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~llpil~~L 128 (744)
.++++.||+|+|||.+ +-.++..+
T Consensus 41 ~~i~I~G~~GtGKT~l-~~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV-TKYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHH
Confidence 5799999999999985 34444444
No 283
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.77 E-value=0.27 Score=58.29 Aligned_cols=39 Identities=21% Similarity=0.410 Sum_probs=25.7
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEe
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 251 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~S 251 (744)
...+++||||+|+|....+ ..+..++...+....+|+.+
T Consensus 118 gk~KVIIIDEad~Ls~~A~-NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCHHHH-HHHHHHHHhCCCCcEEEEEe
Confidence 4678999999998765433 34555666656566555544
No 284
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.76 E-value=0.2 Score=58.99 Aligned_cols=40 Identities=20% Similarity=0.436 Sum_probs=26.2
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeec
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 253 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT 253 (744)
...+++||||+|+|....+ ..+..+++..|....+|+ .+|
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v~FIL-aTt 156 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHVKFLF-ATT 156 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCcEEEE-EEC
Confidence 4578999999998765543 455566666565554544 444
No 285
>PRK04195 replication factor C large subunit; Provisional
Probab=93.76 E-value=0.37 Score=55.59 Aligned_cols=42 Identities=21% Similarity=0.232 Sum_probs=27.4
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHc---CCCEEEEccCCCchhHH
Q 004567 66 TRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLC---GRDILGAAKTGSGKTLA 119 (744)
Q Consensus 66 ~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~---g~dvlv~a~TGSGKTla 119 (744)
.+|+++-..+.....|... +..... .+.+|+.||+|+|||..
T Consensus 11 ~~l~dlvg~~~~~~~l~~~------------l~~~~~g~~~~~lLL~GppG~GKTtl 55 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREW------------IESWLKGKPKKALLLYGPPGVGKTSL 55 (482)
T ss_pred CCHHHhcCCHHHHHHHHHH------------HHHHhcCCCCCeEEEECCCCCCHHHH
Confidence 4577776666666655332 111112 36799999999999985
No 286
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.73 E-value=0.29 Score=55.76 Aligned_cols=17 Identities=29% Similarity=0.194 Sum_probs=14.4
Q ss_pred EEEEccCCCchhHHhHH
Q 004567 106 ILGAAKTGSGKTLAFVI 122 (744)
Q Consensus 106 vlv~a~TGSGKTla~ll 122 (744)
+|+.||.|+|||.++.+
T Consensus 43 ~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 43 YIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 79999999999987433
No 287
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.73 E-value=0.87 Score=51.18 Aligned_cols=40 Identities=25% Similarity=0.503 Sum_probs=23.4
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeec
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 253 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT 253 (744)
....++||||+|++....+ ..+...++..|... +++|.+|
T Consensus 126 ~~~kvvIIdea~~l~~~~~-~~LLk~LEep~~~t-~~Il~t~ 165 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAF-NAFLKTLEEPPPHA-IFIFATT 165 (397)
T ss_pred CCeEEEEEeChhhCCHHHH-HHHHHHHhcCCCCe-EEEEEeC
Confidence 5778999999999875432 23344444444333 3344444
No 288
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.73 E-value=0.54 Score=53.02 Aligned_cols=131 Identities=17% Similarity=0.201 Sum_probs=64.6
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEc--CChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHH
Q 004567 105 DILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIIS--PTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDME 182 (744)
Q Consensus 105 dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~--PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e 182 (744)
-++++|++|+|||.+.. -|...+.. .|.++++++ |.|.-|. +.++.++...++.+.....+.......
T Consensus 102 vi~lvG~~GvGKTTtaa--KLA~~l~~-----~G~kV~lV~~D~~R~aA~---eQLk~~a~~~~vp~~~~~~~~dp~~i~ 171 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCT--KLAYYYQR-----KGFKPCLVCADTFRAGAF---DQLKQNATKARIPFYGSYTESDPVKIA 171 (429)
T ss_pred EEEEECCCCCCHHHHHH--HHHHHHHH-----CCCCEEEEcCcccchhHH---HHHHHHhhccCCeEEeecCCCCHHHHH
Confidence 36799999999998632 22223332 245555554 3465443 344444444445443333211111100
Q ss_pred HHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhc-cchHHHHHHHHHhCCCCCcEEEEeeccChhHHHH
Q 004567 183 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILD-VGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDL 261 (744)
Q Consensus 183 ~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld-~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~l 261 (744)
.. -+..+.. ...++||||=+-++-. ......+..+.....+..-++.++||........
T Consensus 172 ~~--------------~l~~~~~------~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~ 231 (429)
T TIGR01425 172 SE--------------GVEKFKK------ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ 231 (429)
T ss_pred HH--------------HHHHHHh------CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH
Confidence 00 0111111 2345666666654321 2234555566555555556778888877655555
Q ss_pred HHHh
Q 004567 262 ARLS 265 (744)
Q Consensus 262 a~~~ 265 (744)
+..+
T Consensus 232 a~~F 235 (429)
T TIGR01425 232 AKAF 235 (429)
T ss_pred HHHH
Confidence 5443
No 289
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.72 E-value=0.31 Score=50.03 Aligned_cols=42 Identities=19% Similarity=0.371 Sum_probs=25.6
Q ss_pred CceEEEEcCchhhhccchHHHHHHHHHhCCCCCc-EEEEeeccC
Q 004567 213 QLQILILDEADRILDVGFKKALNAIVSQLPKHRQ-TFLFSATQT 255 (744)
Q Consensus 213 ~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q-~ll~SAT~~ 255 (744)
..++|||||+|.+... -...+..++..+..... +++++++.+
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~ 132 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAA 132 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 4568999999987543 24445555554433333 577777754
No 290
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=93.68 E-value=0.27 Score=59.76 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=53.0
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhh
Q 004567 87 VKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162 (744)
Q Consensus 87 ~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~ 162 (744)
..+++-|++|+.. ....++|.|..|||||.+.+--+...+..... ...++|+++-|+..|..+.+.+..++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i---~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNV---APWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCC---CHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 3589999999964 34679999999999999855544444422222 23569999999999998888887654
No 291
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.68 E-value=0.59 Score=54.50 Aligned_cols=39 Identities=21% Similarity=0.427 Sum_probs=25.6
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEe
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 251 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~S 251 (744)
...+++||||+|+|....+ ..+...++..|....+|+.+
T Consensus 118 ~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 5678999999998876443 34455555555555555544
No 292
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.66 E-value=0.58 Score=49.41 Aligned_cols=27 Identities=22% Similarity=0.169 Sum_probs=21.7
Q ss_pred HHHHHHHHcCCCEEEEccCCCchhHHh
Q 004567 94 RASLPHSLCGRDILGAAKTGSGKTLAF 120 (744)
Q Consensus 94 ~~aip~il~g~dvlv~a~TGSGKTla~ 120 (744)
..++..+..|.++++.|++|+|||...
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHH
Confidence 344555667899999999999999863
No 293
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.65 E-value=0.42 Score=56.39 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=25.8
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEe
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 251 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~S 251 (744)
...+++||||+|+|.... ...+...++..|....+|+.+
T Consensus 131 a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred CCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 567899999999886543 334455556656565555543
No 294
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=93.63 E-value=1 Score=53.19 Aligned_cols=148 Identities=11% Similarity=0.111 Sum_probs=80.4
Q ss_pred CcHHHHHHHHHHH---cCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccC
Q 004567 89 MTDIQRASLPHSL---CGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH 165 (744)
Q Consensus 89 ~t~iQ~~aip~il---~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~ 165 (744)
|.|.=.+-|..++ ..+-.++.+|=|.|||.+..+.++ .+.. ..|..++|.+|...-+.+++..+.......
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~-~La~-----f~Gi~IlvTAH~~~ts~evF~rv~~~le~l 243 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILA-AMIS-----FLEIDIVVQAQRKTMCLTLYNRVETVVHAY 243 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHH-HHHH-----hcCCeEEEECCChhhHHHHHHHHHHHHHHh
Confidence 3444444444433 346688899999999997544444 3322 136789999999999999998887776532
Q ss_pred C----c----eEEEEEcCccChHHHH---HhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHH
Q 004567 166 N----F----SAGLLIGGRRDVDMEK---EHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKAL 234 (744)
Q Consensus 166 ~----~----~~~~l~Gg~~~~~~e~---~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l 234 (744)
+ + .+..+.|+...+.... ...+...|..++-. .....-..+++||+|||.-+-. ..+
T Consensus 244 g~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars--------~~s~RG~~~DLLIVDEAAfI~~----~~l 311 (752)
T PHA03333 244 QHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS--------PNAARGQNPDLVIVDEAAFVNP----GAL 311 (752)
T ss_pred ccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc--------CCCcCCCCCCEEEEECcccCCH----HHH
Confidence 2 0 1111222111111110 00011334433311 1111113568999999997765 334
Q ss_pred HHHHHhCC-CCCcEEEEeecc
Q 004567 235 NAIVSQLP-KHRQTFLFSATQ 254 (744)
Q Consensus 235 ~~Il~~lp-~~~q~ll~SAT~ 254 (744)
..|+-.+. ....++++|.+-
T Consensus 312 ~aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 312 LSVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred HHHHHHHccCCCceEEEeCCC
Confidence 44444333 355677777774
No 295
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.61 E-value=0.79 Score=47.46 Aligned_cols=53 Identities=15% Similarity=0.244 Sum_probs=33.1
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhh
Q 004567 102 CGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162 (744)
Q Consensus 102 ~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~ 162 (744)
.|.-+++.|++|+|||...+-.+.. +.. .|.++++++. .+-..+..+.+..++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~-~~~------~g~~~~yi~~-e~~~~~~~~~~~~~g 75 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYG-FLQ------NGYSVSYVST-QLTTTEFIKQMMSLG 75 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-HHh------CCCcEEEEeC-CCCHHHHHHHHHHhC
Confidence 3667899999999999853333333 222 3566788884 334455555555544
No 296
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.61 E-value=0.23 Score=66.15 Aligned_cols=62 Identities=24% Similarity=0.380 Sum_probs=45.2
Q ss_pred CCCcHHHHHHHHHHHcCCC--EEEEccCCCchhHHhH---HHHHHHHHhccCCCCCCceEEEEcCChHHHHHH
Q 004567 87 VKMTDIQRASLPHSLCGRD--ILGAAKTGSGKTLAFV---IPVLEKLYKERWGPEDGVGSIIISPTRELADQL 154 (744)
Q Consensus 87 ~~~t~iQ~~aip~il~g~d--vlv~a~TGSGKTla~l---lpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi 154 (744)
..+++.|+.|+..++.+.| ++++|..|+|||.... -++.+.+ . ..|..++.++||-.-+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~-~-----~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAF-E-----SEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHH-H-----hcCCeEEEEeChHHHHHHH
Confidence 3799999999999997754 6789999999998631 2233322 2 2467799999997766543
No 297
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.49 E-value=0.38 Score=56.80 Aligned_cols=42 Identities=17% Similarity=0.402 Sum_probs=25.4
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeeccC
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQT 255 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~ 255 (744)
..++++||||+|+|....|. .+...++.-|....+|+ .+|-+
T Consensus 123 g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~fIL-~Ttd~ 164 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKFVL-ATTDP 164 (618)
T ss_pred CCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEEEE-EECCc
Confidence 46789999999998765543 34444444444444444 33533
No 298
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.45 E-value=0.34 Score=58.13 Aligned_cols=118 Identities=14% Similarity=0.168 Sum_probs=56.7
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCC-ceEEEEc-CChHHHHHHHHHHHHhhccCCceEEEEEcCccChHH
Q 004567 104 RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDG-VGSIIIS-PTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDM 181 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g-~~aLIl~-PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~ 181 (744)
+-+++.||||+|||.+.. .|...+.. ..| .++.+++ -|--.+. .+.++.++...++.+.
T Consensus 186 ~Vi~lVGpnGvGKTTTia--KLA~~~~~----~~G~kkV~lit~Dt~RigA--~eQL~~~a~~~gvpv~----------- 246 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTA--KLAARCVA----REGADQLALLTTDSFRIGA--LEQLRIYGRILGVPVH----------- 246 (767)
T ss_pred eEEEEECCCCCcHHHHHH--HHHhhHHH----HcCCCeEEEecCcccchHH--HHHHHHHHHhCCCCcc-----------
Confidence 346799999999998733 33322211 123 3444443 2322111 3444545444333221
Q ss_pred HHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhh-ccchHHHHHHHHHhCCCCCcEEEEeeccC
Q 004567 182 EKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRIL-DVGFKKALNAIVSQLPKHRQTFLFSATQT 255 (744)
Q Consensus 182 e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~ll-d~gf~~~l~~Il~~lp~~~q~ll~SAT~~ 255 (744)
++.+|..+.+.+... .+.++|+||=+=+.- +......+..+.....+...++.+|||..
T Consensus 247 ----------~~~~~~~l~~al~~~-----~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~ 306 (767)
T PRK14723 247 ----------AVKDAADLRFALAAL-----GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH 306 (767)
T ss_pred ----------ccCCHHHHHHHHHHh-----cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc
Confidence 223555555555432 344667777666543 22233334444433334445666777753
No 299
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.43 E-value=0.46 Score=53.02 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=17.9
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHH
Q 004567 104 RDILGAAKTGSGKTLAFVIPVLEKL 128 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~llpil~~L 128 (744)
.++++.|++|+|||.+ +-.++..+
T Consensus 56 ~~~lI~G~~GtGKT~l-~~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT-VKKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHH
Confidence 5699999999999986 33344444
No 300
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.41 E-value=0.56 Score=51.24 Aligned_cols=44 Identities=25% Similarity=0.308 Sum_probs=27.8
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHH
Q 004567 102 CGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQ 153 (744)
Q Consensus 102 ~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Q 153 (744)
.+.++++.|+||+|||.. +..+...+.. .|..|+++ +..+|..+
T Consensus 182 ~~~~Lll~G~~GtGKThL-a~aIa~~l~~------~g~~V~y~-t~~~l~~~ 225 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFL-SNCIAKELLD------RGKSVIYR-TADELIEI 225 (329)
T ss_pred cCCcEEEECCCCCcHHHH-HHHHHHHHHH------CCCeEEEE-EHHHHHHH
Confidence 357899999999999984 3344444443 25555554 44555443
No 301
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.38 E-value=0.45 Score=56.12 Aligned_cols=42 Identities=24% Similarity=0.356 Sum_probs=26.6
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeeccC
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQT 255 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~ 255 (744)
...+++||||+|+|.... ...+..+++.-|....+|+ .+|-+
T Consensus 118 ~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl-~t~~~ 159 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIF-ATTEP 159 (576)
T ss_pred CCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEE-EeCCh
Confidence 577899999999876543 3455566665555554444 33533
No 302
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.38 E-value=1.2 Score=50.10 Aligned_cols=124 Identities=14% Similarity=0.126 Sum_probs=63.2
Q ss_pred EEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEc--CChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHH
Q 004567 106 ILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIIS--PTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEK 183 (744)
Q Consensus 106 vlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~--PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~ 183 (744)
++++||||+|||....-.+...... .|.++.+++ +.|..+.. .++.++...++....
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~------~G~~V~Lit~Dt~R~aA~e---QLk~yAe~lgvp~~~------------ 284 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLH------MGKSVSLYTTDNYRIAAIE---QLKRYADTMGMPFYP------------ 284 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHh------cCCeEEEecccchhhhHHH---HHHHHHHhcCCCeee------------
Confidence 7789999999998743333322211 234444443 33554432 344444333332110
Q ss_pred HhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhh-ccchHHHHHHHHHhCC---CCCcEEEEeeccCh-hH
Q 004567 184 EHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRIL-DVGFKKALNAIVSQLP---KHRQTFLFSATQTK-SV 258 (744)
Q Consensus 184 ~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~ll-d~gf~~~l~~Il~~lp---~~~q~ll~SAT~~~-~v 258 (744)
+..+..+...+.. .+.++||||=+-+.. +..-...+..++.... +...++.+|||... .+
T Consensus 285 ---------~~~~~~l~~~l~~------~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~ 349 (432)
T PRK12724 285 ---------VKDIKKFKETLAR------DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHT 349 (432)
T ss_pred ---------hHHHHHHHHHHHh------CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHH
Confidence 1113344444431 456789999766542 2333445555555442 22357788999876 44
Q ss_pred HHHHHHh
Q 004567 259 QDLARLS 265 (744)
Q Consensus 259 ~~la~~~ 265 (744)
...+..+
T Consensus 350 ~~~~~~f 356 (432)
T PRK12724 350 LTVLKAY 356 (432)
T ss_pred HHHHHHh
Confidence 4444433
No 303
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.33 E-value=0.28 Score=51.84 Aligned_cols=41 Identities=32% Similarity=0.227 Sum_probs=26.5
Q ss_pred HHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcC
Q 004567 100 SLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISP 146 (744)
Q Consensus 100 il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~P 146 (744)
+..|.-+++.|++|+|||...+..+...+ . ..|..+++++-
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~-~-----~~g~~vl~iS~ 67 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLI-T-----QHGVRVGTISL 67 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHH-H-----hcCceEEEEEc
Confidence 34567789999999999985333333322 1 12667888874
No 304
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.30 E-value=0.69 Score=50.26 Aligned_cols=39 Identities=18% Similarity=0.353 Sum_probs=25.8
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEe
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 251 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~S 251 (744)
....+|||||+|.+... ....+..++...+....+|+.+
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEe
Confidence 45578999999987543 3455666777666656555433
No 305
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.23 E-value=0.46 Score=55.75 Aligned_cols=41 Identities=24% Similarity=0.480 Sum_probs=23.7
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeecc
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQ 254 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~ 254 (744)
....++||||+|+|....+. .+...+...|... +++|.+|-
T Consensus 118 ~~~kViIIDE~~~Lt~~a~n-aLLKtLEepp~~~-ifIlatt~ 158 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTGAFN-ALLKTLEEPPAHV-IFILATTE 158 (559)
T ss_pred CCeEEEEEECcccCCHHHHH-HHHHHhcCCCCCe-EEEEEeCC
Confidence 56789999999988654433 3344444444333 33333443
No 306
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=93.21 E-value=0.4 Score=54.16 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=25.5
Q ss_pred CcHHHHHHHHHHHcCCCEEEEccCCCchhHHh
Q 004567 89 MTDIQRASLPHSLCGRDILGAAKTGSGKTLAF 120 (744)
Q Consensus 89 ~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~ 120 (744)
+-......+..+..++++++.|++|+|||..+
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 44455566777778999999999999999863
No 307
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.18 E-value=1.1 Score=47.64 Aligned_cols=54 Identities=17% Similarity=0.334 Sum_probs=30.7
Q ss_pred CCceEEEEcCchhhh-ccchHHHHHHHHHhCC------CCCcEEEEeeccChhHHHHHHHh
Q 004567 212 SQLQILILDEADRIL-DVGFKKALNAIVSQLP------KHRQTFLFSATQTKSVQDLARLS 265 (744)
Q Consensus 212 ~~l~~lVlDEAh~ll-d~gf~~~l~~Il~~lp------~~~q~ll~SAT~~~~v~~la~~~ 265 (744)
.++++||||=+-++. +......+..+....+ ..--++.++||........+..+
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f 213 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVF 213 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHH
Confidence 446777777776543 2233445555555444 44557888998665544444333
No 308
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.18 E-value=1.1 Score=50.31 Aligned_cols=44 Identities=23% Similarity=0.467 Sum_probs=27.7
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeeccChh
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKS 257 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~ 257 (744)
...+++||||+|+|.... ...+..+++.-|... ++++.+|-+..
T Consensus 116 ~~~kViiIDead~m~~~a-anaLLk~LEep~~~~-~fIL~a~~~~~ 159 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA-ANALLKAVEEPPPRT-VWLLCAPSPED 159 (394)
T ss_pred CCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCC-eEEEEECChHH
Confidence 567899999999986543 345555665544444 45555554433
No 309
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=93.18 E-value=0.12 Score=60.35 Aligned_cols=167 Identities=15% Similarity=0.207 Sum_probs=98.6
Q ss_pred CCcHHHHHHHHHHHcCCC----------EEEEccCCC--chhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHH
Q 004567 88 KMTDIQRASLPHSLCGRD----------ILGAAKTGS--GKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLF 155 (744)
Q Consensus 88 ~~t~iQ~~aip~il~g~d----------vlv~a~TGS--GKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~ 155 (744)
.++..|.+||-.+.+.++ .|+-...|- |.|.| --|++..++ ..+++|+++-+..|-..-.
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvA--giIfeNyLk------GRKrAlW~SVSsDLKfDAE 335 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVA--GIIFENYLK------GRKRALWFSVSSDLKFDAE 335 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeE--EEEehhhhc------ccceeEEEEeccccccchh
Confidence 477789999877665322 444444444 45654 334555443 3578999999999988878
Q ss_pred HHHHHhhccCCceEEEEEcCccC--hHHHHHhcCCCcEEEEChHHHHHHHhcCCC------------CCCCCceEEEEcC
Q 004567 156 DVLKAVGKHHNFSAGLLIGGRRD--VDMEKEHVNELNILVCTPGRLLQHMDETPN------------FDCSQLQILILDE 221 (744)
Q Consensus 156 ~~l~~~~~~~~~~~~~l~Gg~~~--~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~------------~~~~~l~~lVlDE 221 (744)
+.|+.++. +++.+..+.. -+. +..+....-+-.|++||+-.|+---..... +--..=.+|||||
T Consensus 336 RDL~DigA-~~I~V~alnK-~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDE 413 (1300)
T KOG1513|consen 336 RDLRDIGA-TGIAVHALNK-FKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDE 413 (1300)
T ss_pred hchhhcCC-CCccceehhh-cccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehh
Confidence 88888764 3455544332 111 111111112346999999776432221100 0011225899999
Q ss_pred chhhhcc---------chHHHHHHHHHhCCCCCcEEEEeeccC---hhHHHHHHHh
Q 004567 222 ADRILDV---------GFKKALNAIVSQLPKHRQTFLFSATQT---KSVQDLARLS 265 (744)
Q Consensus 222 Ah~lld~---------gf~~~l~~Il~~lp~~~q~ll~SAT~~---~~v~~la~~~ 265 (744)
||+--+. ..+..+..+-..||. .+++.-|||-. .++....+++
T Consensus 414 CHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~-ARVVYASATGAsEPrNMaYM~RLG 468 (1300)
T KOG1513|consen 414 CHKAKNLVPTAGAKSTKTGKTVLDLQKKLPN-ARVVYASATGASEPRNMAYMVRLG 468 (1300)
T ss_pred hhhhcccccccCCCcCcccHhHHHHHHhCCC-ceEEEeeccCCCCcchhhhhhhhc
Confidence 9965441 256778888888874 66999999943 3333344443
No 310
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.10 E-value=0.62 Score=55.14 Aligned_cols=39 Identities=15% Similarity=0.271 Sum_probs=23.9
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEe
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 251 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~S 251 (744)
...+++||||+|.|.... ...+...++.-|...-+|+++
T Consensus 126 ~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred CCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 567899999999987543 234444555544444344433
No 311
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.09 E-value=1.1 Score=50.72 Aligned_cols=48 Identities=17% Similarity=0.286 Sum_probs=30.1
Q ss_pred eEEEEcCchhhh-ccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHH
Q 004567 215 QILILDEADRIL-DVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLA 262 (744)
Q Consensus 215 ~~lVlDEAh~ll-d~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la 262 (744)
++||||.|-++. +...-..+..+.....+..-++.++||........+
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a 225 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQA 225 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHH
Confidence 789999996543 233445566666665555667788888754433333
No 312
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.06 E-value=0.52 Score=55.37 Aligned_cols=42 Identities=33% Similarity=0.456 Sum_probs=27.0
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeeccC
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQT 255 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~ 255 (744)
...+++||||+|+|.... ...+..+++..|...-+|+.+ |-+
T Consensus 117 ~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t-te~ 158 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT-TEP 158 (584)
T ss_pred CCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe-CCh
Confidence 577899999999887554 334555666655555445444 544
No 313
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.04 E-value=0.85 Score=44.41 Aligned_cols=54 Identities=20% Similarity=0.347 Sum_probs=43.4
Q ss_pred CCCceEEEEcCchhhhccch--HHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHH
Q 004567 211 CSQLQILILDEADRILDVGF--KKALNAIVSQLPKHRQTFLFSATQTKSVQDLARL 264 (744)
Q Consensus 211 ~~~l~~lVlDEAh~lld~gf--~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~ 264 (744)
...+++|||||+=..+..|+ ...+..++...|...-+|+.+-..|+.+.+++.+
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~ 148 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADL 148 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCce
Confidence 35789999999998877764 4667788888888888888888888887776654
No 314
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.99 E-value=0.32 Score=48.71 Aligned_cols=146 Identities=12% Similarity=0.118 Sum_probs=81.0
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHH-HHHHHHHHHhhccCCceEEEEEcCccChH
Q 004567 102 CGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELA-DQLFDVLKAVGKHHNFSAGLLIGGRRDVD 180 (744)
Q Consensus 102 ~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa-~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~ 180 (744)
....+++..++|.|||.+++--++..+ ..|.+++|+-=.+--. .--...+.++. ++... ..|.+....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~-------g~G~~V~ivQFlKg~~~~GE~~~l~~l~---~v~~~-~~g~~~~~~ 89 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAV-------GHGKKVGVVQFIKGAWSTGERNLLEFGG---GVEFH-VMGTGFTWE 89 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHH-------HCCCeEEEEEEecCCCccCHHHHHhcCC---CcEEE-ECCCCCccc
Confidence 456799999999999999877777766 4567777764221110 00011222221 22211 122111110
Q ss_pred HHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccch--HHHHHHHHHhCCCCCcEEEEeeccChhH
Q 004567 181 MEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGF--KKALNAIVSQLPKHRQTFLFSATQTKSV 258 (744)
Q Consensus 181 ~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf--~~~l~~Il~~lp~~~q~ll~SAT~~~~v 258 (744)
. .....-+......++.... .+.-..+++|||||+=..++.|+ ...+..++...|...-+|+..-..|..+
T Consensus 90 ~-----~~~~e~~~~~~~~~~~a~~--~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~L 162 (191)
T PRK05986 90 T-----QDRERDIAAAREGWEEAKR--MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPREL 162 (191)
T ss_pred C-----CCcHHHHHHHHHHHHHHHH--HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHH
Confidence 0 0000000011122222221 12235789999999999888875 4667778888888877887777788887
Q ss_pred HHHHHHh
Q 004567 259 QDLARLS 265 (744)
Q Consensus 259 ~~la~~~ 265 (744)
.+.+.+.
T Consensus 163 ie~ADlV 169 (191)
T PRK05986 163 IEAADLV 169 (191)
T ss_pred HHhCchh
Confidence 7776543
No 315
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=92.96 E-value=0.46 Score=51.75 Aligned_cols=40 Identities=13% Similarity=0.199 Sum_probs=26.3
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEee
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSA 252 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SA 252 (744)
...+++|||+||+|.... ...+.++++.-|....+++.|.
T Consensus 106 g~~KV~iI~~a~~m~~~A-aNaLLKtLEEPp~~~~fiL~t~ 145 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAA-ANALLKTLEEPRPNTYFLLQAD 145 (325)
T ss_pred CCceEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEEEC
Confidence 567899999999987543 5556666666555554444443
No 316
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=92.80 E-value=0.4 Score=56.15 Aligned_cols=42 Identities=26% Similarity=0.347 Sum_probs=24.7
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeeccC
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQT 255 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~ 255 (744)
...+++||||||+|.... ...+...+...|...-+| |.+|-+
T Consensus 118 ~~~KVIIIDEad~Lt~~A-~NaLLKtLEEPp~~tvfI-L~Tt~~ 159 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTSA-WNALLKTLEEPPKHVVFI-FATTEF 159 (605)
T ss_pred CCcEEEEEechHhCCHHH-HHHHHHHHHhCCCcEEEE-EECCCh
Confidence 456889999999875433 344555555555444334 333433
No 317
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.79 E-value=0.65 Score=51.27 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=26.9
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEe
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 251 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~S 251 (744)
....++||||||.|.... ...+..+++.-|....++++|
T Consensus 140 g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 567899999999886443 455666667655555556654
No 318
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.75 E-value=0.51 Score=54.05 Aligned_cols=17 Identities=35% Similarity=0.335 Sum_probs=14.4
Q ss_pred CCCEEEEccCCCchhHH
Q 004567 103 GRDILGAAKTGSGKTLA 119 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla 119 (744)
|+-+++.||||+|||.+
T Consensus 256 g~Vi~LvGpnGvGKTTT 272 (484)
T PRK06995 256 GGVFALMGPTGVGKTTT 272 (484)
T ss_pred CcEEEEECCCCccHHHH
Confidence 34577999999999997
No 319
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.75 E-value=1.4 Score=43.54 Aligned_cols=53 Identities=21% Similarity=0.416 Sum_probs=42.8
Q ss_pred CCceEEEEcCchhhhccch--HHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHH
Q 004567 212 SQLQILILDEADRILDVGF--KKALNAIVSQLPKHRQTFLFSATQTKSVQDLARL 264 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf--~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~ 264 (744)
..+++|||||+=..++.|+ ...+..++...|....+|+..-..|..+.+++.+
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCce
Confidence 5789999999998888774 3567778888888888888888888888777654
No 320
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=92.71 E-value=0.52 Score=51.75 Aligned_cols=41 Identities=15% Similarity=0.046 Sum_probs=27.2
Q ss_pred CcHHHHHHHHHHHc--C---CCEEEEccCCCchhHHhHHHHHHHHHh
Q 004567 89 MTDIQRASLPHSLC--G---RDILGAAKTGSGKTLAFVIPVLEKLYK 130 (744)
Q Consensus 89 ~t~iQ~~aip~il~--g---~dvlv~a~TGSGKTla~llpil~~L~~ 130 (744)
++|||...+..+.. + +-+|+.||.|.|||..+.. +...|..
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~-~A~~LlC 47 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQH-LAQGLLC 47 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHH-HHHHHcC
Confidence 36777777766654 2 2478999999999986433 3344433
No 321
>PRK09401 reverse gyrase; Reviewed
Probab=92.70 E-value=1.3 Score=56.45 Aligned_cols=71 Identities=28% Similarity=0.437 Sum_probs=47.9
Q ss_pred CceEEEEcCChHH---HHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEC---hHHHHHHHhcCCCCCC
Q 004567 138 GVGSIIISPTREL---ADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCT---PGRLLQHMDETPNFDC 211 (744)
Q Consensus 138 g~~aLIl~PtreL---a~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~T---PgrLl~~l~~~~~~~~ 211 (744)
+.++||.|||+.- |..+.+.|+. .++.+..++|+. ....+....+..+|+||| .+-+. .++++
T Consensus 328 ~~~~LIFv~t~~~~~~ae~l~~~L~~----~gi~v~~~hg~l-~~~l~~F~~G~~~VLVatas~tdv~a------RGIDi 396 (1176)
T PRK09401 328 GDGGLIFVPSDKGKEYAEELAEYLED----LGINAELAISGF-ERKFEKFEEGEVDVLVGVASYYGVLV------RGIDL 396 (1176)
T ss_pred CCCEEEEEecccChHHHHHHHHHHHH----CCCcEEEEeCcH-HHHHHHHHCCCCCEEEEecCCCCcee------ecCCC
Confidence 3568999998654 7766666655 468999999944 333344555689999997 23332 25677
Q ss_pred CC-ceEEEE
Q 004567 212 SQ-LQILIL 219 (744)
Q Consensus 212 ~~-l~~lVl 219 (744)
.+ ++++|+
T Consensus 397 P~~IryVI~ 405 (1176)
T PRK09401 397 PERIRYAIF 405 (1176)
T ss_pred CcceeEEEE
Confidence 76 777776
No 322
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.69 E-value=1.1 Score=53.02 Aligned_cols=40 Identities=25% Similarity=0.516 Sum_probs=23.2
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeec
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 253 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT 253 (744)
....+|||||+|.|....+ ..+...+...+... +++|.+|
T Consensus 119 ~~~kVvIIDEa~~L~~~a~-naLLk~LEepp~~t-v~Il~t~ 158 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAF-NALLKTLEEPPPHA-IFILATT 158 (585)
T ss_pred CCeEEEEEeChHhCCHHHH-HHHHHHHhcCCCCe-EEEEEeC
Confidence 5678999999998765432 33444444444333 3444444
No 323
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=92.68 E-value=1.5 Score=47.22 Aligned_cols=38 Identities=24% Similarity=0.389 Sum_probs=25.4
Q ss_pred CceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEe
Q 004567 213 QLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 251 (744)
Q Consensus 213 ~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~S 251 (744)
...+|||||+|.+.... ...+..++...+....+++.+
T Consensus 102 ~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEe
Confidence 46799999999875432 445666666666666555544
No 324
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=92.67 E-value=0.58 Score=53.33 Aligned_cols=49 Identities=8% Similarity=0.200 Sum_probs=28.4
Q ss_pred CCceEEEEcCchhhhccc-hHHHHHHHHHhCC-CCCcEEEEeeccChhHHH
Q 004567 212 SQLQILILDEADRILDVG-FKKALNAIVSQLP-KHRQTFLFSATQTKSVQD 260 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~g-f~~~l~~Il~~lp-~~~q~ll~SAT~~~~v~~ 260 (744)
.+.++|+|||+|.+.... ....+..++..+. ...|+++.|-+.|..+..
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~ 251 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKA 251 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhh
Confidence 456899999999886532 2334444444332 345666655555555443
No 325
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.65 E-value=0.7 Score=56.24 Aligned_cols=43 Identities=19% Similarity=0.340 Sum_probs=27.1
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeeccCh
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTK 256 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~ 256 (744)
....++||||||+|.... ...+.++++.-|....+|+. .|-+.
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa-TTe~~ 160 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA-TTDPQ 160 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE-CCCch
Confidence 467899999999886433 34555566655555555554 44333
No 326
>PRK10867 signal recognition particle protein; Provisional
Probab=92.59 E-value=0.95 Score=51.27 Aligned_cols=130 Identities=18% Similarity=0.194 Sum_probs=59.5
Q ss_pred EEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEc--CChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHH
Q 004567 106 ILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIIS--PTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEK 183 (744)
Q Consensus 106 vlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~--PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~ 183 (744)
++++|++|+|||.+..-.+. .+ .. ..|.++++++ +.|.-+. +.++.++...++.+..... .
T Consensus 103 I~~vG~~GsGKTTtaakLA~-~l-~~----~~G~kV~lV~~D~~R~aa~---eQL~~~a~~~gv~v~~~~~-~------- 165 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAK-YL-KK----KKKKKVLLVAADVYRPAAI---EQLKTLGEQIGVPVFPSGD-G------- 165 (433)
T ss_pred EEEECCCCCcHHHHHHHHHH-HH-HH----hcCCcEEEEEccccchHHH---HHHHHHHhhcCCeEEecCC-C-------
Confidence 77899999999986332222 22 21 1144455444 3454443 3334444444444322211 1
Q ss_pred HhcCCCcEEEEChHHHHH-HHhcCCCCCCCCceEEEEcCchhhh-ccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHH
Q 004567 184 EHVNELNILVCTPGRLLQ-HMDETPNFDCSQLQILILDEADRIL-DVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDL 261 (744)
Q Consensus 184 ~~~~~~~IlV~TPgrLl~-~l~~~~~~~~~~l~~lVlDEAh~ll-d~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~l 261 (744)
..|..+.. .+.. .....+++||+|=+=++- +......+..+.....+..-++.++||........
T Consensus 166 ----------~dp~~i~~~a~~~---a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~ 232 (433)
T PRK10867 166 ----------QDPVDIAKAALEE---AKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNT 232 (433)
T ss_pred ----------CCHHHHHHHHHHH---HHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHH
Confidence 12222221 1110 011345667777665443 22223444444444433333666777755554444
Q ss_pred HHHh
Q 004567 262 ARLS 265 (744)
Q Consensus 262 a~~~ 265 (744)
+..+
T Consensus 233 a~~F 236 (433)
T PRK10867 233 AKAF 236 (433)
T ss_pred HHHH
Confidence 4433
No 327
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.55 E-value=0.48 Score=56.24 Aligned_cols=19 Identities=32% Similarity=0.287 Sum_probs=15.3
Q ss_pred CCEEEEccCCCchhHHhHH
Q 004567 104 RDILGAAKTGSGKTLAFVI 122 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~ll 122 (744)
..+|+.||.|+|||..+.+
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~ 57 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARI 57 (620)
T ss_pred ceEEEECCCCCChHHHHHH
Confidence 4579999999999986433
No 328
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=92.51 E-value=1.1 Score=49.61 Aligned_cols=25 Identities=40% Similarity=0.456 Sum_probs=18.5
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHH
Q 004567 104 RDILGAAKTGSGKTLAFVIPVLEKLY 129 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~llpil~~L~ 129 (744)
.|+++.|+||+|||.+ +--+++.+.
T Consensus 43 ~n~~iyG~~GTGKT~~-~~~v~~~l~ 67 (366)
T COG1474 43 SNIIIYGPTGTGKTAT-VKFVMEELE 67 (366)
T ss_pred ccEEEECCCCCCHhHH-HHHHHHHHH
Confidence 4699999999999987 344444443
No 329
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=92.50 E-value=0.91 Score=50.41 Aligned_cols=61 Identities=21% Similarity=0.226 Sum_probs=34.3
Q ss_pred cEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeec
Q 004567 190 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 253 (744)
Q Consensus 190 ~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT 253 (744)
.|.|-..-.+.+.+...+. .....++||||+|.|-.. -...+.++++..|....+|++|..
T Consensus 120 ~I~VdqiR~l~~~~~~~~~--~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 120 VITVDEVRELISFFGLTAA--EGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred cccHHHHHHHHHHhCcCcc--cCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECC
Confidence 3444333334444433322 256789999999987543 345566666665555555555444
No 330
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=92.45 E-value=1.1 Score=52.79 Aligned_cols=138 Identities=15% Similarity=0.207 Sum_probs=81.9
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccC--CceEEEEEcCccCh
Q 004567 102 CGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHH--NFSAGLLIGGRRDV 179 (744)
Q Consensus 102 ~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~--~~~~~~l~Gg~~~~ 179 (744)
..+-.++..|==.|||.. +.+++..+... ..|..+++++|.+..+..+++.+....... +..+..+.| ..+
T Consensus 253 kqk~tVflVPRR~GKTwi-vv~iI~~ll~s----~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG--e~I 325 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWF-LVPLIALALAT----FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG--ETI 325 (738)
T ss_pred hccceEEEecccCCchhh-HHHHHHHHHHh----CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC--cEE
Confidence 345678888999999995 44666655432 358899999999999999999888865431 111112222 111
Q ss_pred HHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeeccCh
Q 004567 180 DMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTK 256 (744)
Q Consensus 180 ~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~ 256 (744)
...-..-....|.++|- .+.....=.+++++|+|||+-+-+..+...+ -.+.. .+.++|++|.|-+.
T Consensus 326 ~i~f~nG~kstI~FaSa-------rntNsiRGqtfDLLIVDEAqFIk~~al~~il-p~l~~--~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 326 SFSFPDGSRSTIVFASS-------HNTNGIRGQDFNLLFVDEANFIRPDAVQTIM-GFLNQ--TNCKIIFVSSTNTG 392 (738)
T ss_pred EEEecCCCccEEEEEec-------cCCCCccCCcccEEEEechhhCCHHHHHHHH-HHHhc--cCccEEEEecCCCC
Confidence 00000001135556531 1111122247899999999988764444333 22222 37889999988554
No 331
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.44 E-value=0.4 Score=49.22 Aligned_cols=133 Identities=18% Similarity=0.197 Sum_probs=68.4
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCC----c-eEEEEEcCcc
Q 004567 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHN----F-SAGLLIGGRR 177 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~----~-~~~~l~Gg~~ 177 (744)
|.-+++.|++|||||+-.+-.+.+.+.+ .|.++++++- .+-..++.+.+..++-... . ....+.. .
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~------~ge~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~--~ 89 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKN------FGEKVLYVSF-EEPPEELIENMKSFGWDLEEYEDSGKLKIIDA--F 89 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHH------HT--EEEEES-SS-HHHHHHHHHTTTS-HHHHHHTTSEEEEES--S
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhh------cCCcEEEEEe-cCCHHHHHHHHHHcCCcHHHHhhcCCEEEEec--c
Confidence 4669999999999998655555555432 0566788874 3444566666665542110 0 0111111 0
Q ss_pred ChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhc----cchHHHHHHHHHhCCCCCcEEEEeec
Q 004567 178 DVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILD----VGFKKALNAIVSQLPKHRQTFLFSAT 253 (744)
Q Consensus 178 ~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld----~gf~~~l~~Il~~lp~~~q~ll~SAT 253 (744)
....... -..+..++..+... +.-.....+|||-...+.. ..+...+..+...+.....+.+++++
T Consensus 90 ~~~~~~~--------~~~~~~l~~~i~~~--i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~~ 159 (226)
T PF06745_consen 90 PERIGWS--------PNDLEELLSKIREA--IEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTSE 159 (226)
T ss_dssp GGGST-T--------SCCHHHHHHHHHHH--HHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred ccccccc--------ccCHHHHHHHHHHH--HHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEEc
Confidence 0000000 12344444433321 1111237899999887721 23556677777777655667777776
Q ss_pred c
Q 004567 254 Q 254 (744)
Q Consensus 254 ~ 254 (744)
.
T Consensus 160 ~ 160 (226)
T PF06745_consen 160 M 160 (226)
T ss_dssp E
T ss_pred c
Confidence 4
No 332
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=92.38 E-value=0.67 Score=49.59 Aligned_cols=115 Identities=16% Similarity=0.219 Sum_probs=57.7
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhcc---CCC--CCCceEEEEcCChHHHHHHHHHH-HHhhccCCceEEEEEcCcc
Q 004567 104 RDILGAAKTGSGKTLAFVIPVLEKLYKER---WGP--EDGVGSIIISPTRELADQLFDVL-KAVGKHHNFSAGLLIGGRR 177 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~llpil~~L~~~~---~~~--~~g~~aLIl~PtreLa~Qi~~~l-~~~~~~~~~~~~~l~Gg~~ 177 (744)
.+++++|+||.|||.. ++++.+.- ... ..-+-++|-+|...-..-.|..+ ..++-.+.- ..
T Consensus 62 p~lLivG~snnGKT~I-----i~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~--------~~ 128 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI-----IERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP--------RD 128 (302)
T ss_pred CceEEecCCCCcHHHH-----HHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC--------CC
Confidence 5799999999999984 44444321 110 11133455567665555445443 333322111 11
Q ss_pred ChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccch--HHHHHHHHHhCCCC--CcEEEE
Q 004567 178 DVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGF--KKALNAIVSQLPKH--RQTFLF 250 (744)
Q Consensus 178 ~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf--~~~l~~Il~~lp~~--~q~ll~ 250 (744)
..... -...++++. .-++++|||||.|.++.... ...+...++++.+. ..++++
T Consensus 129 ~~~~~-------------~~~~~~llr------~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~v 186 (302)
T PF05621_consen 129 RVAKL-------------EQQVLRLLR------RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGV 186 (302)
T ss_pred CHHHH-------------HHHHHHHHH------HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEe
Confidence 11000 001222332 24678999999999886542 23344444454443 345544
No 333
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=92.37 E-value=0.29 Score=57.41 Aligned_cols=127 Identities=16% Similarity=0.111 Sum_probs=73.9
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHH-HHHHHhhcc
Q 004567 88 KMTDIQRASLPHSLCG--RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLF-DVLKAVGKH 164 (744)
Q Consensus 88 ~~t~iQ~~aip~il~g--~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~-~~l~~~~~~ 164 (744)
..+|+|.+.+..+... +.|++..++-+|||.+.+..+. ..+. .+...+|++.||.++|..+. ..|..+...
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g-~~i~-----~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~ 89 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIG-YSID-----QDPGPMLYVQPTDDAAKDFSKERLDPMIRA 89 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhce-EEEE-----eCCCCEEEEEEcHHHHHHHHHHHHHHHHHh
Confidence 5788898888776653 5689999999999995333222 2111 23355899999999998876 345544433
Q ss_pred CCceEEEEEc---CccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhc
Q 004567 165 HNFSAGLLIG---GRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILD 227 (744)
Q Consensus 165 ~~~~~~~l~G---g~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld 227 (744)
.......+.. ...........+.+..|.++.-+. ...+.-..++++++||.|.+..
T Consensus 90 sp~l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S-------~~~l~s~~~r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 90 SPVLRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANS-------PSNLRSRPARYLLLDEVDRYPD 148 (557)
T ss_pred CHHHHHHhCchhhcccCCchhheecCCCEEEEEeCCC-------CcccccCCcCEEEEechhhccc
Confidence 2221112221 011112222233344455444211 1234456789999999998853
No 334
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=92.36 E-value=1.6 Score=52.15 Aligned_cols=150 Identities=18% Similarity=0.207 Sum_probs=89.3
Q ss_pred HHHCCCCCCcHHHHHHHHHHHcCC--CEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHH
Q 004567 81 LKDAGFVKMTDIQRASLPHSLCGR--DILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVL 158 (744)
Q Consensus 81 L~~~gf~~~t~iQ~~aip~il~g~--dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l 158 (744)
|.....+....-|.+.+..++.++ -+++.|.=|=|||.+.=+.+. .+.+. .....++|.+|+.+-+..++..+
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~-~~~~~----~~~~~iiVTAP~~~nv~~Lf~fa 281 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALA-AAARL----AGSVRIIVTAPTPANVQTLFEFA 281 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHH-HHHHh----cCCceEEEeCCCHHHHHHHHHHH
Confidence 444455555555666666666653 478899999999988655552 22221 11467999999999888888777
Q ss_pred HHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHH
Q 004567 159 KAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIV 238 (744)
Q Consensus 159 ~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il 238 (744)
.+-....+.............. ........|=+-+|.... ..-++||+|||=.|- -+.+..++
T Consensus 282 ~~~l~~lg~~~~v~~d~~g~~~--~~~~~~~~i~y~~P~~a~-----------~~~DllvVDEAAaIp----lplL~~l~ 344 (758)
T COG1444 282 GKGLEFLGYKRKVAPDALGEIR--EVSGDGFRIEYVPPDDAQ-----------EEADLLVVDEAAAIP----LPLLHKLL 344 (758)
T ss_pred HHhHHHhCCcccccccccccee--eecCCceeEEeeCcchhc-----------ccCCEEEEehhhcCC----hHHHHHHH
Confidence 6655444433222211000000 000122346667775542 114689999998653 45666666
Q ss_pred HhCCCCCcEEEEeeccCh
Q 004567 239 SQLPKHRQTFLFSATQTK 256 (744)
Q Consensus 239 ~~lp~~~q~ll~SAT~~~ 256 (744)
... +.++||.|+..
T Consensus 345 ~~~----~rv~~sTTIhG 358 (758)
T COG1444 345 RRF----PRVLFSTTIHG 358 (758)
T ss_pred hhc----CceEEEeeecc
Confidence 654 47889999653
No 335
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.35 E-value=0.48 Score=51.43 Aligned_cols=75 Identities=25% Similarity=0.302 Sum_probs=50.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHH-cCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEE
Q 004567 64 GSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSL-CGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSI 142 (744)
Q Consensus 64 ~~~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il-~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aL 142 (744)
....|..-+++..- |.+.| .+++.|..-+..++ .+++++++|+||||||.. +.+++..+ ....+++
T Consensus 108 ~IRk~~~~~~t~~~---l~~~g--t~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~I-------p~~~riv 174 (312)
T COG0630 108 TIRKFSDEPITPED---LIEYG--TISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFI-------PPEERIV 174 (312)
T ss_pred EEEcCCCCCCCHHH---HhhcC--CCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhC-------CchhcEE
Confidence 34456655655544 33444 47777777666555 568999999999999984 56665554 2345677
Q ss_pred EEcCChHHH
Q 004567 143 IISPTRELA 151 (744)
Q Consensus 143 Il~PtreLa 151 (744)
.+--|.++.
T Consensus 175 tIEdt~E~~ 183 (312)
T COG0630 175 TIEDTPELK 183 (312)
T ss_pred EEecccccc
Confidence 777777764
No 336
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.20 E-value=0.31 Score=53.40 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=29.8
Q ss_pred HcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHH
Q 004567 101 LCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELA 151 (744)
Q Consensus 101 l~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa 151 (744)
..+++++++|+||||||.. +-.++..+ ....++++|=-+.||.
T Consensus 158 ~~~~nili~G~tgSGKTTl-l~aL~~~i-------p~~~ri~tiEd~~El~ 200 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTF-TNAALREI-------PAIERLITVEDAREIV 200 (332)
T ss_pred HcCCcEEEECCCCCCHHHH-HHHHHhhC-------CCCCeEEEecCCCccc
Confidence 3578999999999999984 44444443 2345677776677765
No 337
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.19 E-value=0.2 Score=55.03 Aligned_cols=44 Identities=27% Similarity=0.241 Sum_probs=30.6
Q ss_pred HHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHH
Q 004567 100 SLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELA 151 (744)
Q Consensus 100 il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa 151 (744)
+..+++++++|+||||||.. +-.++..+ ....+++.|-.+.||.
T Consensus 159 v~~~~nilI~G~tGSGKTTl-l~aLl~~i-------~~~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTM-SKTLISAI-------PPQERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHH-HHHHHccc-------CCCCCEEEECCCcccc
Confidence 33578999999999999984 33343332 1245677788888774
No 338
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.06 E-value=0.17 Score=55.22 Aligned_cols=56 Identities=21% Similarity=0.427 Sum_probs=34.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHC------C--CCC---C---cHHHHHHH------HHHHcC-----CCEEEEccCCCchhH
Q 004567 64 GSTRFDQLPISKKTKSGLKDA------G--FVK---M---TDIQRASL------PHSLCG-----RDILGAAKTGSGKTL 118 (744)
Q Consensus 64 ~~~~F~~l~ls~~~~~~L~~~------g--f~~---~---t~iQ~~ai------p~il~g-----~dvlv~a~TGSGKTl 118 (744)
....|+.++....+...|+.- + +.. + -.+=.+|+ |.+.+| +.||++||.|+|||+
T Consensus 181 ~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTl 260 (491)
T KOG0738|consen 181 EDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTL 260 (491)
T ss_pred ccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHH
Confidence 345688888887888877641 1 111 1 11111222 334455 679999999999998
Q ss_pred H
Q 004567 119 A 119 (744)
Q Consensus 119 a 119 (744)
.
T Consensus 261 L 261 (491)
T KOG0738|consen 261 L 261 (491)
T ss_pred H
Confidence 4
No 339
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.06 E-value=0.34 Score=48.27 Aligned_cols=37 Identities=35% Similarity=0.358 Sum_probs=28.7
Q ss_pred HHHCCCCCCcHHHHHHHHHHHc-CCCEEEEccCCCchhHH
Q 004567 81 LKDAGFVKMTDIQRASLPHSLC-GRDILGAAKTGSGKTLA 119 (744)
Q Consensus 81 L~~~gf~~~t~iQ~~aip~il~-g~dvlv~a~TGSGKTla 119 (744)
|.+.|+ +++-|...+...+. |..++++|+||||||..
T Consensus 4 l~~~g~--~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 4 LIAQGT--FSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred HHHcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 445554 77778888876664 67899999999999985
No 340
>CHL00181 cbbX CbbX; Provisional
Probab=92.04 E-value=0.55 Score=50.34 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchhHHh
Q 004567 103 GRDILGAAKTGSGKTLAF 120 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~ 120 (744)
|.++++.||+|+|||..+
T Consensus 59 ~~~ill~G~pGtGKT~lA 76 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVA 76 (287)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456899999999999863
No 341
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.00 E-value=1.1 Score=48.83 Aligned_cols=41 Identities=12% Similarity=0.241 Sum_probs=26.4
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeec
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 253 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT 253 (744)
...+++|||+||+|.... ...+.++++.-|.+..+|+.|..
T Consensus 107 ~~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 107 NGYRLFVIEPADAMNESA-SNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred CCceEEEecchhhhCHHH-HHHHHHHhcCCCCCeEEEEEECC
Confidence 567899999999986443 45556666664544444444433
No 342
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.95 E-value=0.9 Score=52.95 Aligned_cols=39 Identities=15% Similarity=0.247 Sum_probs=26.4
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEe
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 251 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~S 251 (744)
....++||||||+|.... ...+...++..|....+|+.+
T Consensus 118 g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 567899999999987644 345556666666565555544
No 343
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=91.92 E-value=0.54 Score=48.56 Aligned_cols=52 Identities=19% Similarity=0.244 Sum_probs=32.5
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhh
Q 004567 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~ 162 (744)
|.-+++.|++|+|||.-....+.+.+ ..|.++++++--.. ..++.+.+..++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~-------~~g~~~~y~~~e~~-~~~~~~~~~~~g 76 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGAL-------KQGKKVYVITTENT-SKSYLKQMESVK 76 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHH-------hCCCEEEEEEcCCC-HHHHHHHHHHCC
Confidence 45688999999999985444444333 23566777775433 345555565554
No 344
>PF05729 NACHT: NACHT domain
Probab=91.91 E-value=0.81 Score=43.69 Aligned_cols=45 Identities=20% Similarity=0.281 Sum_probs=25.7
Q ss_pred EEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHH
Q 004567 106 ILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELAD 152 (744)
Q Consensus 106 vlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~ 152 (744)
+++.|+.|+|||.. +.-+...+......... ..+++..+.+....
T Consensus 3 l~I~G~~G~GKStl-l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 47 (166)
T PF05729_consen 3 LWISGEPGSGKSTL-LRKLAQQLAEEEPPPSK-FPYPFFFSLRDISD 47 (166)
T ss_pred EEEECCCCCChHHH-HHHHHHHHHhcCccccc-ceEEEEEeehhhhh
Confidence 78999999999984 44555555444321111 23444555555443
No 345
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=91.87 E-value=0.73 Score=49.30 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchhHHh
Q 004567 103 GRDILGAAKTGSGKTLAF 120 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~ 120 (744)
+.++++.||+|+|||.++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 457999999999999863
No 346
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=91.87 E-value=0.77 Score=55.30 Aligned_cols=76 Identities=18% Similarity=0.299 Sum_probs=65.9
Q ss_pred CCcEEEEecchHHHHHHHHHHHhhCC--CCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccc-cccccccCCCCcEEE
Q 004567 311 NSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV-ASRGLDFNKAVDWVV 386 (744)
Q Consensus 311 ~~k~IVF~~s~~~v~~l~~~L~~l~~--g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv-~arGlDi~p~V~~VI 386 (744)
+.+++|.++|..-+..+++.|+.+++ ++.+..+||+++..+|..++....+ ...|+|+|.. +...+.+ ..+.+||
T Consensus 310 g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~-~~l~lvV 388 (681)
T PRK10917 310 GYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEF-HNLGLVI 388 (681)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchh-cccceEE
Confidence 67899999999999999999888754 5789999999999999999999988 7999999964 4556788 7899888
Q ss_pred E
Q 004567 387 Q 387 (744)
Q Consensus 387 ~ 387 (744)
.
T Consensus 389 I 389 (681)
T PRK10917 389 I 389 (681)
T ss_pred E
Confidence 5
No 347
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.83 E-value=0.33 Score=55.09 Aligned_cols=39 Identities=38% Similarity=0.422 Sum_probs=29.7
Q ss_pred CcHHHHHHHHHHHcCCC--EEEEccCCCchhHHhHHHHHHHH
Q 004567 89 MTDIQRASLPHSLCGRD--ILGAAKTGSGKTLAFVIPVLEKL 128 (744)
Q Consensus 89 ~t~iQ~~aip~il~g~d--vlv~a~TGSGKTla~llpil~~L 128 (744)
+++.|...+-.++.... +|+.||||||||.+ +..++..+
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~l 282 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSEL 282 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHh
Confidence 46777777777776655 78999999999987 55566655
No 348
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.80 E-value=0.62 Score=55.74 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=38.4
Q ss_pred ceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeeccCh
Q 004567 214 LQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTK 256 (744)
Q Consensus 214 l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~ 256 (744)
.=++|||..|++.+......+..++++.|.+.+.++.|=+.|.
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 3589999999999999999999999999999999988887553
No 349
>PRK13342 recombination factor protein RarA; Reviewed
Probab=91.62 E-value=1.1 Score=50.71 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=23.2
Q ss_pred CceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeeccC
Q 004567 213 QLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQT 255 (744)
Q Consensus 213 ~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~ 255 (744)
.-.+|+|||+|++... ....++..+.. ..++++.+|-.
T Consensus 92 ~~~vL~IDEi~~l~~~----~q~~LL~~le~-~~iilI~att~ 129 (413)
T PRK13342 92 RRTILFIDEIHRFNKA----QQDALLPHVED-GTITLIGATTE 129 (413)
T ss_pred CceEEEEechhhhCHH----HHHHHHHHhhc-CcEEEEEeCCC
Confidence 4568999999987532 23334444433 45777777643
No 350
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=91.57 E-value=0.3 Score=53.61 Aligned_cols=68 Identities=21% Similarity=0.165 Sum_probs=45.5
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHHc-CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHH
Q 004567 74 SKKTKSGLKDAGFVKMTDIQRASLPHSLC-GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELA 151 (744)
Q Consensus 74 s~~~~~~L~~~gf~~~t~iQ~~aip~il~-g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa 151 (744)
....+..|...|+ +++.+...+..+.. +.+++++|+||||||.. +-.++..+ ....+.+++--+.||.
T Consensus 150 ~~~tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~~~i-------~~~~riv~iEd~~El~ 218 (340)
T TIGR03819 150 RTFTLDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALLALV-------APDERIVLVEDAAELR 218 (340)
T ss_pred ccCCHHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHccC-------CCCCcEEEECCcceec
Confidence 3445666777777 66777777766554 57899999999999984 33333332 1235577777777774
No 351
>PTZ00293 thymidine kinase; Provisional
Probab=91.50 E-value=0.98 Score=46.03 Aligned_cols=39 Identities=15% Similarity=0.184 Sum_probs=26.4
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCCh
Q 004567 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTR 148 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~Ptr 148 (744)
|.=.++.||+|||||.- |+-.+.+.. ..|.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTte-LLr~i~~y~------~ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTE-LMRLVKRFT------YSEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHH-HHHHHHHHH------HcCCceEEEEecc
Confidence 44467899999999975 344443332 2367788888864
No 352
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=91.49 E-value=0.32 Score=50.34 Aligned_cols=45 Identities=27% Similarity=0.327 Sum_probs=28.5
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcC---ChHHHH
Q 004567 102 CGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISP---TRELAD 152 (744)
Q Consensus 102 ~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~P---treLa~ 152 (744)
.|.-+++.|++|+|||.. ++-++..+..+ .|..+++++. ..+++.
T Consensus 12 ~G~l~lI~G~~G~GKT~~-~~~~~~~~~~~-----~g~~vly~s~E~~~~~~~~ 59 (242)
T cd00984 12 PGDLIIIAARPSMGKTAF-ALNIAENIAKK-----QGKPVLFFSLEMSKEQLLQ 59 (242)
T ss_pred CCeEEEEEeCCCCCHHHH-HHHHHHHHHHh-----CCCceEEEeCCCCHHHHHH
Confidence 356688999999999974 34333333222 2667888883 444444
No 353
>PRK08939 primosomal protein DnaI; Reviewed
Probab=91.47 E-value=1 Score=48.73 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=18.6
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHH
Q 004567 103 GRDILGAAKTGSGKTLAFVIPVLEKLY 129 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~llpil~~L~ 129 (744)
++.+++.|++|+|||.. +..+...+.
T Consensus 156 ~~gl~L~G~~G~GKThL-a~Aia~~l~ 181 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYL-LAAIANELA 181 (306)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHH
Confidence 46799999999999975 334444443
No 354
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.41 E-value=1.5 Score=50.37 Aligned_cols=16 Identities=31% Similarity=0.291 Sum_probs=13.8
Q ss_pred EEEEccCCCchhHHhH
Q 004567 106 ILGAAKTGSGKTLAFV 121 (744)
Q Consensus 106 vlv~a~TGSGKTla~l 121 (744)
+|+.||.|+|||..+.
T Consensus 39 ~Lf~GPpGtGKTTlA~ 54 (472)
T PRK14962 39 YIFAGPRGTGKTTVAR 54 (472)
T ss_pred EEEECCCCCCHHHHHH
Confidence 6999999999998643
No 355
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=91.31 E-value=0.35 Score=49.63 Aligned_cols=15 Identities=33% Similarity=0.308 Sum_probs=13.6
Q ss_pred CEEEEccCCCchhHH
Q 004567 105 DILGAAKTGSGKTLA 119 (744)
Q Consensus 105 dvlv~a~TGSGKTla 119 (744)
++|+.||.|+|||..
T Consensus 52 h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTL 66 (233)
T ss_dssp EEEEESSTTSSHHHH
T ss_pred eEEEECCCccchhHH
Confidence 589999999999984
No 356
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=91.28 E-value=0.8 Score=53.18 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=27.0
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEe
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 251 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~S 251 (744)
....++||||||+|.... ...+..+++..|....+|+++
T Consensus 116 ~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 577899999999886543 345566666666666666554
No 357
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=91.17 E-value=0.57 Score=50.07 Aligned_cols=17 Identities=35% Similarity=0.319 Sum_probs=14.3
Q ss_pred CCEEEEccCCCchhHHh
Q 004567 104 RDILGAAKTGSGKTLAF 120 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~ 120 (744)
+.++++||||+|||...
T Consensus 195 ~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTL 211 (282)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45789999999999863
No 358
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.12 E-value=0.58 Score=51.45 Aligned_cols=40 Identities=35% Similarity=0.441 Sum_probs=26.0
Q ss_pred EEEEcCchhhhcc--------chHHHHHHHHHhCC-CCCcEEEEeeccC
Q 004567 216 ILILDEADRILDV--------GFKKALNAIVSQLP-KHRQTFLFSATQT 255 (744)
Q Consensus 216 ~lVlDEAh~lld~--------gf~~~l~~Il~~lp-~~~q~ll~SAT~~ 255 (744)
+|+|||||..+.. .....++.++-... ..+.++|+=||--
T Consensus 446 llFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNr 494 (630)
T KOG0742|consen 446 LLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNR 494 (630)
T ss_pred EEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCC
Confidence 6888999966532 24456666654443 3467888888843
No 359
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.10 E-value=5.4 Score=46.90 Aligned_cols=107 Identities=18% Similarity=0.246 Sum_probs=67.6
Q ss_pred hCCCcEEEEecchHHHHHHHHHHHhh-----CCCCcEEEeeCCCCHHHHHHHHHHHhc-----cCCeEEEc--ccccccc
Q 004567 309 HLNSKILVFLTSCKQVKYVFEAFKKL-----RPGIPLMCLYGRMKQDRRMAIYAQFCE-----KRSVLFCT--DVASRGL 376 (744)
Q Consensus 309 ~~~~k~IVF~~s~~~v~~l~~~L~~l-----~~g~~v~~lhg~~~~~~R~~i~~~F~~-----~~~VLVaT--dv~arGl 376 (744)
..++.++||++|..-...+...+..- ..+.+-+.+-..-+ =..++..|.. ...+|+|. --++.||
T Consensus 627 ~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGI 703 (821)
T KOG1133|consen 627 AVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGI 703 (821)
T ss_pred hCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccc
Confidence 34689999999998888887777641 01222222222222 2456666655 23677775 5679999
Q ss_pred ccCCC-CcEEEEcCCCCC----H----------------------------hHHHHHhhccCcCCCCCeEEEEeC
Q 004567 377 DFNKA-VDWVVQVDCPED----V----------------------------ASYIHRVGRTARYNSGGRSVLFLT 418 (744)
Q Consensus 377 Di~p~-V~~VI~~d~P~s----~----------------------------~~yiQRiGRagR~g~~G~~il~l~ 418 (744)
||..+ +++||.+++|.. + ...-|-+|||-|.-++=-+|++++
T Consensus 704 NF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD 778 (821)
T KOG1133|consen 704 NFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLD 778 (821)
T ss_pred ccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEeh
Confidence 99333 788999998742 0 123578888888755544555544
No 360
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=91.09 E-value=2.3 Score=43.66 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=31.8
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhh
Q 004567 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~ 162 (744)
|..+++.|++|+|||...+..+.+.+ . .|..+++++- .+...++...+..++
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~-~------~g~~~~~is~-e~~~~~i~~~~~~~g 71 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGL-R------DGDPVIYVTT-EESRESIIRQAAQFG 71 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHH-h------cCCeEEEEEc-cCCHHHHHHHHHHhC
Confidence 56789999999999985443333333 1 2456777764 334455555555443
No 361
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.00 E-value=0.53 Score=50.01 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=19.7
Q ss_pred EEEEccCCCchhHHhHHHHHHHHHh
Q 004567 106 ILGAAKTGSGKTLAFVIPVLEKLYK 130 (744)
Q Consensus 106 vlv~a~TGSGKTla~llpil~~L~~ 130 (744)
|||.||||||||.+ +..|+..+.+
T Consensus 128 ILVTGpTGSGKSTT-lAamId~iN~ 151 (353)
T COG2805 128 ILVTGPTGSGKSTT-LAAMIDYINK 151 (353)
T ss_pred EEEeCCCCCcHHHH-HHHHHHHHhc
Confidence 88999999999986 6777777644
No 362
>PF13173 AAA_14: AAA domain
Probab=90.96 E-value=1.5 Score=40.63 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=25.7
Q ss_pred CceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeec
Q 004567 213 QLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 253 (744)
Q Consensus 213 ~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT 253 (744)
.-.+|||||+|.+-+ +...+..+.... .+.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEccc
Confidence 446799999999864 567777777765 34555554433
No 363
>PRK14873 primosome assembly protein PriA; Provisional
Probab=90.94 E-value=1.5 Score=52.45 Aligned_cols=93 Identities=17% Similarity=0.083 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHHHhC--CCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEcccc
Q 004567 296 EQKLDMLWSFIKAHL--NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA 372 (744)
Q Consensus 296 ~~kl~~L~~lLk~~~--~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~ 372 (744)
..|...++.++.... ++.+||.++....+..+...|+..+++..+..+|++++..+|...+....+ ...|+|.|..+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 467777777776543 678999999999999999999998765789999999999999999999888 78999999754
Q ss_pred ccccccCCCCcEEEEcCC
Q 004567 373 SRGLDFNKAVDWVVQVDC 390 (744)
Q Consensus 373 arGlDi~p~V~~VI~~d~ 390 (744)
. =+-| ++...||..+-
T Consensus 251 v-FaP~-~~LgLIIvdEE 266 (665)
T PRK14873 251 V-FAPV-EDLGLVAIWDD 266 (665)
T ss_pred E-Eecc-CCCCEEEEEcC
Confidence 3 3456 66778887665
No 364
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=90.91 E-value=3.1 Score=43.62 Aligned_cols=32 Identities=19% Similarity=0.098 Sum_probs=22.6
Q ss_pred CCcHHHHHHHHHHH----cCC-CEEEEccCCCchhHH
Q 004567 88 KMTDIQRASLPHSL----CGR-DILGAAKTGSGKTLA 119 (744)
Q Consensus 88 ~~t~iQ~~aip~il----~g~-dvlv~a~TGSGKTla 119 (744)
.+++.+..++..+. .+. .+++.|++|+|||..
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl 59 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTL 59 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 46666666665543 233 488999999999985
No 365
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=90.87 E-value=0.21 Score=63.70 Aligned_cols=95 Identities=19% Similarity=0.310 Sum_probs=77.1
Q ss_pred CcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCC-----------HHHHHHHHHHHhc-cCCeEEEccccccccccC
Q 004567 312 SKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMK-----------QDRRMAIYAQFCE-KRSVLFCTDVASRGLDFN 379 (744)
Q Consensus 312 ~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~-----------~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~ 379 (744)
-..|+|+.-...+....+.+++.+. ..+..+.|.+. +..+.+++..|.. ...+|++|.++..|+|+
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~- 370 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFS-NDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDV- 370 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhc-cCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcch-
Confidence 4678999999988888888887642 22333444432 3346788899988 89999999999999999
Q ss_pred CCCcEEEEcCCCCCHhHHHHHhhccCcCC
Q 004567 380 KAVDWVVQVDCPEDVASYIHRVGRTARYN 408 (744)
Q Consensus 380 p~V~~VI~~d~P~s~~~yiQRiGRagR~g 408 (744)
+.++.|+.++.|.....|+|+.||+-+..
T Consensus 371 ~~~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 371 PKCNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhhhheeccCcchHHHHHHhhcccccch
Confidence 89999999999999999999999997653
No 366
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=90.83 E-value=1.1 Score=53.42 Aligned_cols=76 Identities=16% Similarity=0.304 Sum_probs=65.4
Q ss_pred CCcEEEEecchHHHHHHHHHHHhhCC--CCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEcccc-ccccccCCCCcEEE
Q 004567 311 NSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA-SRGLDFNKAVDWVV 386 (744)
Q Consensus 311 ~~k~IVF~~s~~~v~~l~~~L~~l~~--g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~-arGlDi~p~V~~VI 386 (744)
+.+++|.++|..-+..+++.++++++ ++.+..+||+++...|..++....+ ...|+|+|..+ ...+.+ .++.+||
T Consensus 284 g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~-~~l~lvV 362 (630)
T TIGR00643 284 GYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEF-KRLALVI 362 (630)
T ss_pred CCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccc-cccceEE
Confidence 67899999999999999999988765 6899999999999999999999888 88999999654 456778 7788877
Q ss_pred E
Q 004567 387 Q 387 (744)
Q Consensus 387 ~ 387 (744)
.
T Consensus 363 I 363 (630)
T TIGR00643 363 I 363 (630)
T ss_pred E
Confidence 4
No 367
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=90.81 E-value=0.23 Score=56.92 Aligned_cols=50 Identities=38% Similarity=0.497 Sum_probs=39.4
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhh
Q 004567 104 RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~ 162 (744)
.++++.||||||||..|++|.+-. ..+ .+||.-|--+|...+...+++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~--------~~~-s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN--------YPG-SMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh--------ccC-CEEEEECCCcHHHHHHHHHHHCC
Confidence 479999999999999999998632 123 68999999999887666666554
No 368
>PRK05973 replicative DNA helicase; Provisional
Probab=90.76 E-value=0.51 Score=49.06 Aligned_cols=84 Identities=21% Similarity=0.311 Sum_probs=49.7
Q ss_pred CCCCCHHHHHHHHHCCCCC----------CcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCc
Q 004567 70 QLPISKKTKSGLKDAGFVK----------MTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGV 139 (744)
Q Consensus 70 ~l~ls~~~~~~L~~~gf~~----------~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~ 139 (744)
.++++..+-+.-...||.. +||.. +...-+..|.-+++.|++|+|||+..+-.+.+.+ ..|.
T Consensus 22 ~~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~-~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a-------~~Ge 93 (237)
T PRK05973 22 NIPLHEALDRIAAEEGFSSWSLLAAKAAATTPAE-ELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAM-------KSGR 93 (237)
T ss_pred CCcHHHHHHHHHHHhccchHHHHHHhccCCCCHH-HhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHH-------hcCC
Confidence 3456666666666677764 34422 1222333456689999999999986444444333 2356
Q ss_pred eEEEEcCChHHHHHHHHHHHHhh
Q 004567 140 GSIIISPTRELADQLFDVLKAVG 162 (744)
Q Consensus 140 ~aLIl~PtreLa~Qi~~~l~~~~ 162 (744)
.++|++--- -..|+.+.+..++
T Consensus 94 ~vlyfSlEe-s~~~i~~R~~s~g 115 (237)
T PRK05973 94 TGVFFTLEY-TEQDVRDRLRALG 115 (237)
T ss_pred eEEEEEEeC-CHHHHHHHHHHcC
Confidence 677776432 2466666666653
No 369
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=90.74 E-value=0.73 Score=56.40 Aligned_cols=17 Identities=29% Similarity=0.266 Sum_probs=14.7
Q ss_pred CCCEEEEccCCCchhHH
Q 004567 103 GRDILGAAKTGSGKTLA 119 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla 119 (744)
+..+++.||+|+|||..
T Consensus 347 ~~~lll~GppG~GKT~l 363 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSL 363 (775)
T ss_pred CceEEEECCCCCCHHHH
Confidence 45689999999999975
No 370
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=90.72 E-value=2.4 Score=42.54 Aligned_cols=104 Identities=16% Similarity=0.242 Sum_probs=59.8
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCc-eEEEEEcCccChHHH
Q 004567 104 RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNF-SAGLLIGGRRDVDME 182 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~-~~~~l~Gg~~~~~~e 182 (744)
.=.++.||++||||.. +|..+++-. ..|.++++..|-..- .++. .+..-+|
T Consensus 5 ~l~~i~gpM~SGKT~e----Ll~r~~~~~---~~g~~v~vfkp~iD~-------------R~~~~~V~Sr~G-------- 56 (201)
T COG1435 5 WLEFIYGPMFSGKTEE----LLRRARRYK---EAGMKVLVFKPAIDT-------------RYGVGKVSSRIG-------- 56 (201)
T ss_pred EEEEEEccCcCcchHH----HHHHHHHHH---HcCCeEEEEeccccc-------------ccccceeeeccC--------
Confidence 3367899999999986 233333221 346778888886321 1111 1111122
Q ss_pred HHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHhC
Q 004567 183 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 241 (744)
Q Consensus 183 ~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~l 241 (744)
....-++|-.+..+..++...... .++++|.||||+- ++...-..+..+...+
T Consensus 57 ---~~~~A~~i~~~~~i~~~i~~~~~~--~~~~~v~IDEaQF-~~~~~v~~l~~lad~l 109 (201)
T COG1435 57 ---LSSEAVVIPSDTDIFDEIAALHEK--PPVDCVLIDEAQF-FDEELVYVLNELADRL 109 (201)
T ss_pred ---CcccceecCChHHHHHHHHhcccC--CCcCEEEEehhHh-CCHHHHHHHHHHHhhc
Confidence 112346666777787777654211 2378999999994 3334455566666554
No 371
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=90.69 E-value=0.15 Score=56.87 Aligned_cols=48 Identities=29% Similarity=0.350 Sum_probs=37.5
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHh
Q 004567 105 DILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAV 161 (744)
Q Consensus 105 dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~ 161 (744)
++++.|+||||||.++++|.+-.. +..+||+-|--++........+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~---------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW---------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC---------CCCEEEEccchhHHHHHHHHHHHc
Confidence 589999999999999999876431 245899999999987666655544
No 372
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=90.64 E-value=0.5 Score=51.77 Aligned_cols=137 Identities=15% Similarity=0.097 Sum_probs=65.6
Q ss_pred CcHHHHHHHHHHH----cCC---CEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHh
Q 004567 89 MTDIQRASLPHSL----CGR---DILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAV 161 (744)
Q Consensus 89 ~t~iQ~~aip~il----~g~---dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~ 161 (744)
++|||...+..+. +|+ -.|+.||.|+||+..+.. +...|....-. +..+.=. +..++.+
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~-~A~~LlC~~~~---~~~~Cg~----------C~sC~~~ 68 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYA-LSRWLMCQQPQ---GHKSCGH----------CRGCQLM 68 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHH-HHHHHcCCCCC---CCCCCCC----------CHHHHHH
Confidence 5677777776554 332 378999999999986433 33344332110 0000001 2233333
Q ss_pred hccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHhC
Q 004567 162 GKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 241 (744)
Q Consensus 162 ~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~l 241 (744)
.....-.+..+...+. +..|-|-.--.+.+.+...+.. ...+++|||+||+|.... ...+.++++.=
T Consensus 69 ~~g~HPD~~~i~p~~~----------~~~I~idqiR~l~~~~~~~~~~--g~~kV~iI~~ae~m~~~A-aNaLLKtLEEP 135 (334)
T PRK07993 69 QAGTHPDYYTLTPEKG----------KSSLGVDAVREVTEKLYEHARL--GGAKVVWLPDAALLTDAA-ANALLKTLEEP 135 (334)
T ss_pred HcCCCCCEEEEecccc----------cccCCHHHHHHHHHHHhhcccc--CCceEEEEcchHhhCHHH-HHHHHHHhcCC
Confidence 2221112222222110 0112222222344444444322 577899999999987543 45555555554
Q ss_pred CCCCcEEEEee
Q 004567 242 PKHRQTFLFSA 252 (744)
Q Consensus 242 p~~~q~ll~SA 252 (744)
|...-+++.|.
T Consensus 136 p~~t~fiL~t~ 146 (334)
T PRK07993 136 PENTWFFLACR 146 (334)
T ss_pred CCCeEEEEEEC
Confidence 44444444443
No 373
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=90.60 E-value=0.89 Score=52.53 Aligned_cols=17 Identities=35% Similarity=0.470 Sum_probs=15.0
Q ss_pred CCCEEEEccCCCchhHH
Q 004567 103 GRDILGAAKTGSGKTLA 119 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla 119 (744)
.+.+|+.||+|+|||+.
T Consensus 216 p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CcceEEECCCCCcHHHH
Confidence 36799999999999985
No 374
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=90.58 E-value=3.5 Score=40.20 Aligned_cols=52 Identities=17% Similarity=0.306 Sum_probs=26.9
Q ss_pred CCceEEEEcCchhhh-ccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHH
Q 004567 212 SQLQILILDEADRIL-DVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLAR 263 (744)
Q Consensus 212 ~~l~~lVlDEAh~ll-d~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~ 263 (744)
...+++|+|...... +......+..+........-++.++|+-.......+.
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~ 133 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAK 133 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHH
Confidence 355678888887642 2233344444444333344456666654444433333
No 375
>PRK11823 DNA repair protein RadA; Provisional
Probab=90.57 E-value=1.1 Score=51.29 Aligned_cols=52 Identities=25% Similarity=0.307 Sum_probs=33.2
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhh
Q 004567 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~ 162 (744)
|.-+++.|++|+|||... +-++..+.. .+.+++|++- .+-..|+...+.+++
T Consensus 80 Gs~~lI~G~pG~GKTtL~-lq~a~~~a~------~g~~vlYvs~-Ees~~qi~~ra~rlg 131 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLL-LQVAARLAA------AGGKVLYVSG-EESASQIKLRAERLG 131 (446)
T ss_pred CEEEEEECCCCCCHHHHH-HHHHHHHHh------cCCeEEEEEc-cccHHHHHHHHHHcC
Confidence 355889999999999853 333333321 3566888874 455567766666554
No 376
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=90.55 E-value=2.1 Score=47.67 Aligned_cols=90 Identities=21% Similarity=0.301 Sum_probs=50.3
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHH
Q 004567 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDME 182 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e 182 (744)
|.-+++.|++|+|||... +-+...+.. .+.+++|++-. +-..|+...+.+++-.. ....+.. .
T Consensus 82 GslvLI~G~pG~GKStLl-lq~a~~~a~------~g~~VlYvs~E-Es~~qi~~Ra~rlg~~~--~~l~l~~-e------ 144 (372)
T cd01121 82 GSVILIGGDPGIGKSTLL-LQVAARLAK------RGGKVLYVSGE-ESPEQIKLRADRLGIST--ENLYLLA-E------ 144 (372)
T ss_pred CeEEEEEeCCCCCHHHHH-HHHHHHHHh------cCCeEEEEECC-cCHHHHHHHHHHcCCCc--ccEEEEc-c------
Confidence 455889999999999853 333333322 24568888754 34556665555554211 1011111 0
Q ss_pred HHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhh
Q 004567 183 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRIL 226 (744)
Q Consensus 183 ~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~ll 226 (744)
...+.+.+.+.. .+.++||||+++.+.
T Consensus 145 -----------~~le~I~~~i~~------~~~~lVVIDSIq~l~ 171 (372)
T cd01121 145 -----------TNLEDILASIEE------LKPDLVIIDSIQTVY 171 (372)
T ss_pred -----------CcHHHHHHHHHh------cCCcEEEEcchHHhh
Confidence 122344444432 356899999999875
No 377
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=90.30 E-value=4.7 Score=43.81 Aligned_cols=130 Identities=18% Similarity=0.133 Sum_probs=57.5
Q ss_pred EEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHH-HHH---HHHHhhccCCceEEEEEcCccChHHH
Q 004567 107 LGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQ-LFD---VLKAVGKHHNFSAGLLIGGRRDVDME 182 (744)
Q Consensus 107 lv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Q-i~~---~l~~~~~~~~~~~~~l~Gg~~~~~~e 182 (744)
|+.++.|+|||.+..+.++..+... ..+..++++ ||..-+.. +.. .+..+... .+..............
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~----~~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~- 73 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTR----PPGRRVIIA-STYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRKIIL- 73 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSS----SS--EEEEE-ESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSEEEE-
T ss_pred CCcCCccccHHHHHHHHHHHHHhhC----CCCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCcEEe-
Confidence 5788999999998777666665443 123455555 66554444 222 22223222 1222111000011100
Q ss_pred HHhcCCCcEEEEChHH--HHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeec
Q 004567 183 KEHVNELNILVCTPGR--LLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 253 (744)
Q Consensus 183 ~~~~~~~~IlV~TPgr--Ll~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT 253 (744)
.++..|.+.+-+. -..-+.. ..+.++++||+-.+.+..+...+........... .+++|.|
T Consensus 74 ---~nG~~i~~~~~~~~~~~~~~~G------~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~p 136 (384)
T PF03237_consen 74 ---PNGSRIQFRGADSPDSGDNIRG------FEYDLIIIDEAAKVPDDAFSELIRRLRATWGGSI-RMYISTP 136 (384)
T ss_dssp ---TTS-EEEEES-----SHHHHHT------S--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE-
T ss_pred ---cCceEEEEeccccccccccccc------cccceeeeeecccCchHHHHHHHHhhhhcccCcc-eEEeecC
Confidence 2444566665322 1112221 4677999999998876666665555554443222 2255554
No 378
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.28 E-value=1.1 Score=51.89 Aligned_cols=16 Identities=31% Similarity=0.247 Sum_probs=13.9
Q ss_pred EEEEccCCCchhHHhH
Q 004567 106 ILGAAKTGSGKTLAFV 121 (744)
Q Consensus 106 vlv~a~TGSGKTla~l 121 (744)
+|++||.|+|||.+..
T Consensus 39 ~Lf~GppGtGKTTlA~ 54 (504)
T PRK14963 39 YLFSGPRGVGKTTTAR 54 (504)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5999999999998743
No 379
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.24 E-value=0.76 Score=54.17 Aligned_cols=19 Identities=32% Similarity=0.195 Sum_probs=15.3
Q ss_pred CEEEEccCCCchhHHhHHH
Q 004567 105 DILGAAKTGSGKTLAFVIP 123 (744)
Q Consensus 105 dvlv~a~TGSGKTla~llp 123 (744)
.+|+.||.|+|||.++.+.
T Consensus 40 a~Lf~GPpG~GKTtiAril 58 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIF 58 (624)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4789999999999975443
No 380
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=90.24 E-value=0.95 Score=47.74 Aligned_cols=37 Identities=14% Similarity=0.087 Sum_probs=25.0
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcC
Q 004567 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISP 146 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~P 146 (744)
|.-+++.|++|+|||...+-.+.+.+ ..|..+++++-
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a-------~~Ge~vlyis~ 72 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQA-------SRGNPVLFVTV 72 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-------hCCCcEEEEEe
Confidence 45688999999999985444333332 23566788873
No 381
>PRK05580 primosome assembly protein PriA; Validated
Probab=90.21 E-value=2 Score=51.72 Aligned_cols=77 Identities=16% Similarity=0.236 Sum_probs=64.0
Q ss_pred CCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCcEEEEcC
Q 004567 311 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVD 389 (744)
Q Consensus 311 ~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d 389 (744)
+.++||.+++...+..+++.|+..+ +..+..+||+++..+|...+..... ...|+|+|..+. -+.+ .++.+||.-+
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~f-g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~-~~l~liVvDE 266 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARF-GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPF-KNLGLIIVDE 266 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh-CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccc-cCCCEEEEEC
Confidence 6789999999999999999998865 6789999999999999988888877 789999997433 2566 6788887655
Q ss_pred C
Q 004567 390 C 390 (744)
Q Consensus 390 ~ 390 (744)
.
T Consensus 267 e 267 (679)
T PRK05580 267 E 267 (679)
T ss_pred C
Confidence 3
No 382
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=89.97 E-value=1.4 Score=43.76 Aligned_cols=40 Identities=20% Similarity=0.433 Sum_probs=23.9
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeec
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 253 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT 253 (744)
....++||||+|++.... ...+...++..|... +++|.++
T Consensus 95 ~~~kviiide~~~l~~~~-~~~Ll~~le~~~~~~-~~il~~~ 134 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAA-ANALLKTLEEPPPNT-LFILITP 134 (188)
T ss_pred CCeEEEEEechhhhCHHH-HHHHHHHhcCCCCCe-EEEEEEC
Confidence 567899999999986532 334445555544333 3444443
No 383
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.94 E-value=1.7 Score=50.17 Aligned_cols=40 Identities=25% Similarity=0.473 Sum_probs=23.1
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeec
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 253 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT 253 (744)
....++||||||.+....+ ..+...+...|... ++++.+|
T Consensus 118 ~~~KVvIIDEad~Lt~~a~-naLLk~LEepp~~~-v~Il~tt 157 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAF-NALLKTLEEPPPRT-IFILCTT 157 (486)
T ss_pred CCeeEEEEEChhhcCHHHH-HHHHHHHhcCCCCe-EEEEEEC
Confidence 5678999999998765443 33444444443333 3334334
No 384
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=89.69 E-value=1.5 Score=48.00 Aligned_cols=139 Identities=18% Similarity=0.212 Sum_probs=74.1
Q ss_pred CCcHHHHHHHHHHHcCCC------EEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCC-----hHHHHHHHH
Q 004567 88 KMTDIQRASLPHSLCGRD------ILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPT-----RELADQLFD 156 (744)
Q Consensus 88 ~~t~iQ~~aip~il~g~d------vlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~Pt-----reLa~Qi~~ 156 (744)
..+..|...+..++...+ +++.|.+|||||.. +..+++. .+...+++.+- +-|-.+
T Consensus 9 ~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~-----~r~~l~~-----~n~~~vw~n~~ecft~~~lle~--- 75 (438)
T KOG2543|consen 9 PCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYL-----VRQLLRK-----LNLENVWLNCVECFTYAILLEK--- 75 (438)
T ss_pred cchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHH-----HHHHHhh-----cCCcceeeehHHhccHHHHHHH---
Confidence 467889999988886654 48999999999975 3333332 12334555542 222222
Q ss_pred HHHHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCC-CCCCceEEEEcCchhhhccc--hHHH
Q 004567 157 VLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNF-DCSQLQILILDEADRILDVG--FKKA 233 (744)
Q Consensus 157 ~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~-~~~~l~~lVlDEAh~lld~g--f~~~ 233 (744)
.+.+.+ ..-..+...+.. ...++ .+...+.+.+.. +.+.--+||+|-||.+-|++ ....
T Consensus 76 IL~~~~--------~~d~dg~~~~~~-------~en~~---d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~ 137 (438)
T KOG2543|consen 76 ILNKSQ--------LADKDGDKVEGD-------AENFS---DFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQC 137 (438)
T ss_pred HHHHhc--------cCCCchhhhhhH-------HHHHH---HHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHH
Confidence 222221 000001001000 00011 122223332111 11344589999999999887 3455
Q ss_pred HHHHHHhCCCCCcEEEEeeccChh
Q 004567 234 LNAIVSQLPKHRQTFLFSATQTKS 257 (744)
Q Consensus 234 l~~Il~~lp~~~q~ll~SAT~~~~ 257 (744)
+..+...++...-.+.||+++...
T Consensus 138 l~~L~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 138 LFRLYELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred HHHHHHHhCCCceEEEEeccccHH
Confidence 556666666666678899997754
No 385
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=89.68 E-value=2.2 Score=42.49 Aligned_cols=135 Identities=22% Similarity=0.320 Sum_probs=78.1
Q ss_pred EEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEc------CChHHHHHHHHHHHHhhc---cCCceEEEEEcCc
Q 004567 106 ILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIIS------PTRELADQLFDVLKAVGK---HHNFSAGLLIGGR 176 (744)
Q Consensus 106 vlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~------PtreLa~Qi~~~l~~~~~---~~~~~~~~l~Gg~ 176 (744)
+++....|-|||.+++-.++..+ ..|.+++|+- ++-|. ..+..++. .+++..+ ++...
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~-------GhG~rv~vvQFiKg~~~~GE~-----~~~~~~~~~v~~~~~~~g-~tw~~ 97 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRAL-------GHGLRVGVVQFIKGGWKYGEE-----AALEKFGLGVEFHGMGEG-FTWET 97 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHh-------cCCCEEEEEEEeecCcchhHH-----HHHHhhccceeEEecCCc-eeCCC
Confidence 66778888899999888888776 5677777764 22222 22333311 1111111 11101
Q ss_pred cChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccch--HHHHHHHHHhCCCCCcEEEEeecc
Q 004567 177 RDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGF--KKALNAIVSQLPKHRQTFLFSATQ 254 (744)
Q Consensus 177 ~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf--~~~l~~Il~~lp~~~q~ll~SAT~ 254 (744)
.+... ++ ..+....++.... +.-..+++|||||.--.+..|+ ...+..++..-|....+|+..-..
T Consensus 98 ~~~~~--------d~--~aa~~~w~~a~~~--l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~a 165 (198)
T COG2109 98 QDREA--------DI--AAAKAGWEHAKEA--LADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGA 165 (198)
T ss_pred cCcHH--------HH--HHHHHHHHHHHHH--HhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCC
Confidence 11111 22 2333333333221 2224789999999998887774 456777788878777777766667
Q ss_pred ChhHHHHHHHh
Q 004567 255 TKSVQDLARLS 265 (744)
Q Consensus 255 ~~~v~~la~~~ 265 (744)
|+.+.+++.+.
T Consensus 166 p~~lie~ADlV 176 (198)
T COG2109 166 PPELIELADLV 176 (198)
T ss_pred CHHHHHHHHHH
Confidence 88887777654
No 386
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=89.53 E-value=1.2 Score=49.16 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=21.8
Q ss_pred eEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeec
Q 004567 215 QILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 253 (744)
Q Consensus 215 ~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT 253 (744)
-+|+|||+||+--. +=..++.++. +..++++.||
T Consensus 106 tiLflDEIHRfnK~----QQD~lLp~vE-~G~iilIGAT 139 (436)
T COG2256 106 TILFLDEIHRFNKA----QQDALLPHVE-NGTIILIGAT 139 (436)
T ss_pred eEEEEehhhhcChh----hhhhhhhhhc-CCeEEEEecc
Confidence 36899999996432 2233344443 4568888888
No 387
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=89.43 E-value=3.2 Score=47.43 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=22.9
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEE
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 249 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll 249 (744)
....++||||||.+.... ...+...+...|....+|+
T Consensus 120 ~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred CCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEE
Confidence 567899999999886543 3344555555444443443
No 388
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=89.38 E-value=3.5 Score=44.64 Aligned_cols=129 Identities=22% Similarity=0.324 Sum_probs=72.8
Q ss_pred EEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEc-CC-hHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHH
Q 004567 106 ILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIIS-PT-RELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEK 183 (744)
Q Consensus 106 vlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~-Pt-reLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~ 183 (744)
++++|..|+|||.+ +.=|..++.. .|.++++.+ -| |+=|. +.|+.|+...++.+..-.. |.+
T Consensus 142 il~vGVNG~GKTTT--IaKLA~~l~~-----~g~~VllaA~DTFRAaAi---EQL~~w~er~gv~vI~~~~-G~D----- 205 (340)
T COG0552 142 ILFVGVNGVGKTTT--IAKLAKYLKQ-----QGKSVLLAAGDTFRAAAI---EQLEVWGERLGVPVISGKE-GAD----- 205 (340)
T ss_pred EEEEecCCCchHhH--HHHHHHHHHH-----CCCeEEEEecchHHHHHH---HHHHHHHHHhCCeEEccCC-CCC-----
Confidence 67899999999997 4545554443 466666555 33 76665 4455555555555433111 111
Q ss_pred HhcCCCcEEEEChHH-HHHHHhcCCCCCCCCceEEEEcCchhhhc-cchHHHHHHHHHhCCCCC-----cEEE-EeeccC
Q 004567 184 EHVNELNILVCTPGR-LLQHMDETPNFDCSQLQILILDEADRILD-VGFKKALNAIVSQLPKHR-----QTFL-FSATQT 255 (744)
Q Consensus 184 ~~~~~~~IlV~TPgr-Ll~~l~~~~~~~~~~l~~lVlDEAh~lld-~gf~~~l~~Il~~lp~~~-----q~ll-~SAT~~ 255 (744)
|.. ..+.+... ..+++++|++|=|-||-. .+.-..+..|.+-+.+.. .+++ +=||..
T Consensus 206 ------------pAaVafDAi~~A---kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG 270 (340)
T COG0552 206 ------------PAAVAFDAIQAA---KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG 270 (340)
T ss_pred ------------cHHHHHHHHHHH---HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccC
Confidence 221 12222221 125667777777777653 335566666666654432 2444 489988
Q ss_pred hhHHHHHHHh
Q 004567 256 KSVQDLARLS 265 (744)
Q Consensus 256 ~~v~~la~~~ 265 (744)
.+--..++.+
T Consensus 271 qnal~QAk~F 280 (340)
T COG0552 271 QNALSQAKIF 280 (340)
T ss_pred hhHHHHHHHH
Confidence 8776666655
No 389
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.38 E-value=2.2 Score=49.60 Aligned_cols=76 Identities=16% Similarity=0.228 Sum_probs=62.5
Q ss_pred CCcEEEEecchHHHHHHHHHHHhhCCCCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEccccccccccCCCCcEEEEcC
Q 004567 311 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVD 389 (744)
Q Consensus 311 ~~k~IVF~~s~~~v~~l~~~L~~l~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~arGlDi~p~V~~VI~~d 389 (744)
+.++||.+++..-+..+++.|++.+ +..+..+||+++..+|..+...... ...|+|+|..+- =+.+ +++..||.-+
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f-~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal-f~p~-~~l~lIIVDE 101 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRF-GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL-FLPF-KNLGLIIVDE 101 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh-CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH-cCcc-cCCCEEEEEC
Confidence 6789999999999999999998865 6778999999999999988888777 788999996543 2456 6788877543
No 390
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.36 E-value=2.9 Score=49.63 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=26.0
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeec
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 253 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT 253 (744)
...+++||||||+|.... ...+..+++..|... +++|.+|
T Consensus 120 ~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~t-ifIL~tt 159 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYA-IFILATT 159 (614)
T ss_pred CCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCe-EEEEEeC
Confidence 578899999999986533 345555666555444 4445555
No 391
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=89.36 E-value=1.8 Score=51.98 Aligned_cols=51 Identities=25% Similarity=0.393 Sum_probs=28.2
Q ss_pred HHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeec
Q 004567 199 LLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 253 (744)
Q Consensus 199 Ll~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT 253 (744)
+.+.+...+.. ....++||||||.|.... ...+...+..-|....+| |.+|
T Consensus 106 Lie~~~~~P~~--g~~KV~IIDEa~~LT~~A-~NALLKtLEEPP~~tifI-LaTt 156 (725)
T PRK07133 106 LIENVKNLPTQ--SKYKIYIIDEVHMLSKSA-FNALLKTLEEPPKHVIFI-LATT 156 (725)
T ss_pred HHHHHHhchhc--CCCEEEEEEChhhCCHHH-HHHHHHHhhcCCCceEEE-EEcC
Confidence 44444433332 577899999999876433 334444455544444333 3344
No 392
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=89.31 E-value=5.7 Score=45.03 Aligned_cols=53 Identities=21% Similarity=0.277 Sum_probs=28.1
Q ss_pred CceEEEEcCchhhh-ccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHh
Q 004567 213 QLQILILDEADRIL-DVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLS 265 (744)
Q Consensus 213 ~l~~lVlDEAh~ll-d~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~ 265 (744)
..++||+|=+-++- +......+..+...+.+.--++.++||........+..+
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f 235 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTF 235 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHH
Confidence 45667777666543 222334444555544444446677787665555555433
No 393
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=89.20 E-value=1.2 Score=54.05 Aligned_cols=17 Identities=29% Similarity=0.347 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCchhHH
Q 004567 103 GRDILGAAKTGSGKTLA 119 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla 119 (744)
..++|+.||+|+|||..
T Consensus 207 ~~n~LLvGppGvGKT~l 223 (758)
T PRK11034 207 KNNPLLVGESGVGKTAI 223 (758)
T ss_pred CCCeEEECCCCCCHHHH
Confidence 35899999999999986
No 394
>PRK04841 transcriptional regulator MalT; Provisional
Probab=89.18 E-value=2.1 Score=53.15 Aligned_cols=42 Identities=14% Similarity=0.255 Sum_probs=34.8
Q ss_pred eEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeeccCh
Q 004567 215 QILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTK 256 (744)
Q Consensus 215 ~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~ 256 (744)
-+||||++|.+-+......+..++..+|....+|+.|-+.++
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 479999999987666677888999999999999888877543
No 395
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=89.10 E-value=0.34 Score=57.08 Aligned_cols=50 Identities=28% Similarity=0.213 Sum_probs=40.7
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhh
Q 004567 104 RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~ 162 (744)
.++++.||||||||..|++|.+-.. +..+||+=|--|+...+....++.|
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~---------~~S~VV~DpKGEl~~~Ta~~R~~~G 208 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW---------EDSVVVHDIKLENYELTSGWREKQG 208 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC---------CCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 5799999999999999999998542 2348999999999987777766643
No 396
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=89.04 E-value=2.4 Score=48.90 Aligned_cols=59 Identities=25% Similarity=0.242 Sum_probs=40.4
Q ss_pred HHHHHHcC-----CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhh
Q 004567 96 SLPHSLCG-----RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162 (744)
Q Consensus 96 aip~il~g-----~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~ 162 (744)
.+..++.| .-+++.+++|+|||+..+-.+.+.+ ..|.+++|++ +-|-..|+...+..++
T Consensus 251 ~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~-------~~ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 251 RLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC-------ANKERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred hHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH-------HCCCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 45555543 5589999999999985444433332 2366788877 6677778888887765
No 397
>PRK13531 regulatory ATPase RavA; Provisional
Probab=89.02 E-value=1.3 Score=50.62 Aligned_cols=26 Identities=27% Similarity=0.384 Sum_probs=21.3
Q ss_pred HHHHHHHHcCCCEEEEccCCCchhHH
Q 004567 94 RASLPHSLCGRDILGAAKTGSGKTLA 119 (744)
Q Consensus 94 ~~aip~il~g~dvlv~a~TGSGKTla 119 (744)
..++-.++.|.++++.||+|+|||+.
T Consensus 30 ~lll~aalag~hVLL~GpPGTGKT~L 55 (498)
T PRK13531 30 RLCLLAALSGESVFLLGPPGIAKSLI 55 (498)
T ss_pred HHHHHHHccCCCEEEECCCChhHHHH
Confidence 33445667899999999999999985
No 398
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=88.98 E-value=4.4 Score=40.02 Aligned_cols=141 Identities=19% Similarity=0.230 Sum_probs=68.0
Q ss_pred EEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChH-HHHHHHHHHHHhhccCCceEEEEEcCccChHHHHH
Q 004567 106 ILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRE-LADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKE 184 (744)
Q Consensus 106 vlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~Ptre-La~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~ 184 (744)
+.+....|=|||.|++--++..+ ..|.+|+|+-=.+- -..-=...+..+. ++.. .-.|.+........
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~-------G~G~rV~ivQFlKg~~~~GE~~~l~~l~---~~~~-~~~g~~f~~~~~~~ 74 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAA-------GHGMRVLIVQFLKGGRYSGELKALKKLP---NVEI-ERFGKGFVWRMNEE 74 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHH-------CTT--EEEEESS--SS--HHHHHHGGGT-----EE-EE--TT----GGGH
T ss_pred EEEEeCCCCCchHHHHHHHHHHH-------hCCCEEEEEEEecCCCCcCHHHHHHhCC---eEEE-EEcCCcccccCCCc
Confidence 56777889999999888888776 56788888753332 1110012222222 1221 11121110000000
Q ss_pred hcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccch--HHHHHHHHHhCCCCCcEEEEeeccChhHHHHH
Q 004567 185 HVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGF--KKALNAIVSQLPKHRQTFLFSATQTKSVQDLA 262 (744)
Q Consensus 185 ~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf--~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la 262 (744)
. .+ .......++.... .+....+++|||||+=..++.|+ ...+..++...|...-+|+.--.+|+.+...+
T Consensus 75 ~---~~--~~~~~~~~~~a~~--~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~A 147 (172)
T PF02572_consen 75 E---ED--RAAAREGLEEAKE--AISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAA 147 (172)
T ss_dssp H---HH--HHHHHHHHHHHHH--HTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-
T ss_pred H---HH--HHHHHHHHHHHHH--HHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhC
Confidence 0 00 0011112222221 12236789999999998888875 45677888888888888887777888877776
Q ss_pred HH
Q 004567 263 RL 264 (744)
Q Consensus 263 ~~ 264 (744)
.+
T Consensus 148 Dl 149 (172)
T PF02572_consen 148 DL 149 (172)
T ss_dssp SE
T ss_pred Ce
Confidence 54
No 399
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=88.96 E-value=2.6 Score=46.14 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=16.7
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHH
Q 004567 104 RDILGAAKTGSGKTLAFVIPVLEKL 128 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~llpil~~L 128 (744)
+.+|+.||.|+|||... ..+...+
T Consensus 37 ~~~Ll~G~~G~GKt~~a-~~la~~l 60 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIA-RIFAKAL 60 (355)
T ss_pred eEEEEECCCCCCHHHHH-HHHHHHh
Confidence 34789999999999753 3333444
No 400
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.85 E-value=3.3 Score=45.89 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=14.0
Q ss_pred CCEEEEccCCCchhHH
Q 004567 104 RDILGAAKTGSGKTLA 119 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla 119 (744)
+.++++||.|+|||..
T Consensus 40 ~~~L~~G~~G~GKt~~ 55 (367)
T PRK14970 40 QALLFCGPRGVGKTTC 55 (367)
T ss_pred eEEEEECCCCCCHHHH
Confidence 3688999999999975
No 401
>PRK06620 hypothetical protein; Validated
Probab=88.67 E-value=0.73 Score=47.19 Aligned_cols=16 Identities=31% Similarity=0.289 Sum_probs=14.0
Q ss_pred CCEEEEccCCCchhHH
Q 004567 104 RDILGAAKTGSGKTLA 119 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla 119 (744)
+.+++.||+|||||..
T Consensus 45 ~~l~l~Gp~G~GKThL 60 (214)
T PRK06620 45 FTLLIKGPSSSGKTYL 60 (214)
T ss_pred ceEEEECCCCCCHHHH
Confidence 4489999999999984
No 402
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=88.66 E-value=3.9 Score=47.65 Aligned_cols=39 Identities=23% Similarity=0.294 Sum_probs=27.2
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEE
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLF 250 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~ 250 (744)
.+-.++|+||+-.-+|......+...+..+.+.+-++..
T Consensus 487 ~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiI 525 (529)
T TIGR02868 487 ADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVI 525 (529)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 455689999999888887777777777666444444443
No 403
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=88.58 E-value=0.74 Score=47.79 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=36.4
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhh
Q 004567 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~ 162 (744)
|.-+++.|++|||||+..+-.+.+.+ ..|..+++++ +.+-..|+.+.+..++
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~-------~~ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGL-------QMGEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH-------HcCCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 46689999999999986544444444 2366788888 4566667777666654
No 404
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=88.46 E-value=2.3 Score=50.15 Aligned_cols=96 Identities=23% Similarity=0.335 Sum_probs=56.1
Q ss_pred CCcHHHHHHHHHHH--------cCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHH
Q 004567 88 KMTDIQRASLPHSL--------CGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLK 159 (744)
Q Consensus 88 ~~t~iQ~~aip~il--------~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~ 159 (744)
-|..+-.+.+..+. +|+=+++.||+|-|||-.. .-|++.+.
T Consensus 415 gm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~-------------------------------kSIA~ALn 463 (906)
T KOG2004|consen 415 GMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIA-------------------------------KSIARALN 463 (906)
T ss_pred chHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHH-------------------------------HHHHHHhC
Confidence 46666666666554 3566788999999999741 11122222
Q ss_pred HhhccCCceEEEEEcCccChHHHHHhcC-CCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhc
Q 004567 160 AVGKHHNFSAGLLIGGRRDVDMEKEHVN-ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILD 227 (744)
Q Consensus 160 ~~~~~~~~~~~~l~Gg~~~~~~e~~~~~-~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld 227 (744)
+ +++.+++|- -.+.. ...+ +-..|=+-||++.+.|.....- | -++.|||+|.+..
T Consensus 464 R--kFfRfSvGG----~tDvA---eIkGHRRTYVGAMPGkiIq~LK~v~t~---N-PliLiDEvDKlG~ 519 (906)
T KOG2004|consen 464 R--KFFRFSVGG----MTDVA---EIKGHRRTYVGAMPGKIIQCLKKVKTE---N-PLILIDEVDKLGS 519 (906)
T ss_pred C--ceEEEeccc----cccHH---hhcccceeeeccCChHHHHHHHhhCCC---C-ceEEeehhhhhCC
Confidence 1 122344332 33222 1112 2334556799999999865322 2 3688999999873
No 405
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=88.41 E-value=0.63 Score=54.22 Aligned_cols=42 Identities=26% Similarity=0.283 Sum_probs=33.8
Q ss_pred CCcHHHHHHHHHHH----cCCCEEEEccCCCchhHHhHHHHHHHHH
Q 004567 88 KMTDIQRASLPHSL----CGRDILGAAKTGSGKTLAFVIPVLEKLY 129 (744)
Q Consensus 88 ~~t~iQ~~aip~il----~g~dvlv~a~TGSGKTla~llpil~~L~ 129 (744)
+|+.||...+..+. .|+-.|+.+|||+||||..+=.++..|-
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~ 60 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLR 60 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHH
Confidence 78999998776554 5888899999999999987666666553
No 406
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=88.30 E-value=0.49 Score=48.45 Aligned_cols=14 Identities=36% Similarity=0.434 Sum_probs=12.4
Q ss_pred EEEEccCCCchhHH
Q 004567 106 ILGAAKTGSGKTLA 119 (744)
Q Consensus 106 vlv~a~TGSGKTla 119 (744)
+++.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999985
No 407
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=88.23 E-value=1.7 Score=53.05 Aligned_cols=73 Identities=14% Similarity=0.259 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhCCCcEEEEecchHHHHHHHHHHHhhCC-----CCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEcccc
Q 004567 299 LDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRP-----GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA 372 (744)
Q Consensus 299 l~~L~~lLk~~~~~k~IVF~~s~~~v~~l~~~L~~l~~-----g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTdv~ 372 (744)
+-.+.++.-.+.+.++++.++|..-+.++++.|.++.. .+.+. +||.|+..++..++++|.+ +.+|||+|...
T Consensus 113 fg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 113 FGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 34455555556679999999999999999999988642 23344 9999999999999999999 99999999653
No 408
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=88.22 E-value=1.8 Score=52.64 Aligned_cols=17 Identities=35% Similarity=0.489 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCchhHH
Q 004567 103 GRDILGAAKTGSGKTLA 119 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla 119 (744)
++.+++.||+|+|||+.
T Consensus 212 ~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CceEEEECCCCCChHHH
Confidence 57799999999999974
No 409
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=88.21 E-value=0.69 Score=45.90 Aligned_cols=45 Identities=20% Similarity=0.389 Sum_probs=26.4
Q ss_pred HcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHH
Q 004567 101 LCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQ 153 (744)
Q Consensus 101 l~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Q 153 (744)
-.++++++.|++|+|||..+ ..+...+.. .|..++++ ++.+|...
T Consensus 45 ~~~~~l~l~G~~G~GKThLa-~ai~~~~~~------~g~~v~f~-~~~~L~~~ 89 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLA-VAIANEAIR------KGYSVLFI-TASDLLDE 89 (178)
T ss_dssp SC--EEEEEESTTSSHHHHH-HHHHHHHHH------TT--EEEE-EHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHH-HHHHHHhcc------CCcceeEe-ecCceecc
Confidence 35788999999999999864 444444443 25556655 44455543
No 410
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=88.21 E-value=2.2 Score=51.62 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=24.7
Q ss_pred CceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeeccChh
Q 004567 213 QLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKS 257 (744)
Q Consensus 213 ~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~ 257 (744)
...+|||||+|++.... . ..++..+. ..++++++||-.+.
T Consensus 109 ~~~IL~IDEIh~Ln~~q-Q---daLL~~lE-~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNKAQ-Q---DALLPWVE-NGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCHHH-H---HHHHHHhc-CceEEEEEecCCCh
Confidence 45689999999875322 2 23333333 35688888885543
No 411
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=88.15 E-value=0.72 Score=49.96 Aligned_cols=18 Identities=39% Similarity=0.497 Sum_probs=16.2
Q ss_pred cCCCEEEEccCCCchhHH
Q 004567 102 CGRDILGAAKTGSGKTLA 119 (744)
Q Consensus 102 ~g~dvlv~a~TGSGKTla 119 (744)
.|.+++++|+||||||..
T Consensus 143 ~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTF 160 (308)
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 578999999999999984
No 412
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=88.14 E-value=2.6 Score=45.76 Aligned_cols=59 Identities=10% Similarity=0.215 Sum_probs=36.8
Q ss_pred cEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEee
Q 004567 190 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSA 252 (744)
Q Consensus 190 ~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SA 252 (744)
.|-|-..-.+.+.+...+.. ...+++|||+||.|.... ...+.++++.-| ...++++|.
T Consensus 103 ~I~id~ir~i~~~l~~~p~~--~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 103 QIRLEQIREIKRFLSRPPLE--APRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred cCcHHHHHHHHHHHccCccc--CCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEEC
Confidence 34444444566666555443 578999999999886543 556666677666 554555443
No 413
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=88.13 E-value=1.8 Score=48.56 Aligned_cols=16 Identities=38% Similarity=0.553 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchhHH
Q 004567 104 RDILGAAKTGSGKTLA 119 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla 119 (744)
+.+++.||+|+|||+.
T Consensus 166 ~gvLL~GppGtGKT~l 181 (389)
T PRK03992 166 KGVLLYGPPGTGKTLL 181 (389)
T ss_pred CceEEECCCCCChHHH
Confidence 5699999999999985
No 414
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=88.07 E-value=3.8 Score=44.78 Aligned_cols=42 Identities=14% Similarity=0.302 Sum_probs=27.6
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeeccC
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQT 255 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~ 255 (744)
...+++|+|++|.|-. .....+..+++..+.... ++++++-+
T Consensus 112 ~~~kV~iiEp~~~Ld~-~a~naLLk~LEep~~~~~-~Ilvth~~ 153 (325)
T PRK08699 112 GGLRVILIHPAESMNL-QAANSLLKVLEEPPPQVV-FLLVSHAA 153 (325)
T ss_pred CCceEEEEechhhCCH-HHHHHHHHHHHhCcCCCE-EEEEeCCh
Confidence 5678999999997654 446666667777665544 44444433
No 415
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=88.04 E-value=2.5 Score=52.49 Aligned_cols=76 Identities=16% Similarity=0.271 Sum_probs=65.0
Q ss_pred CCcEEEEecchHHHHHHHHHHHhhCCC--CcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEcc-ccccccccCCCCcEEE
Q 004567 311 NSKILVFLTSCKQVKYVFEAFKKLRPG--IPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD-VASRGLDFNKAVDWVV 386 (744)
Q Consensus 311 ~~k~IVF~~s~~~v~~l~~~L~~l~~g--~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTd-v~arGlDi~p~V~~VI 386 (744)
+.+++|.++|..-|...++.|+.++.+ +.+..++|..+..++..++..+.. +..|+|+|. ++...+.| .++.+||
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f-~~L~llV 578 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKF-KDLGLLI 578 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCc-ccCCEEE
Confidence 578999999999999999999987654 567889999999999999999988 789999996 55667888 7888877
Q ss_pred E
Q 004567 387 Q 387 (744)
Q Consensus 387 ~ 387 (744)
.
T Consensus 579 I 579 (926)
T TIGR00580 579 I 579 (926)
T ss_pred e
Confidence 5
No 416
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=87.94 E-value=1.1 Score=47.34 Aligned_cols=60 Identities=25% Similarity=0.232 Sum_probs=36.5
Q ss_pred HHHCCCCCCcHHHHHHHHHHHc-C-CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHH
Q 004567 81 LKDAGFVKMTDIQRASLPHSLC-G-RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTREL 150 (744)
Q Consensus 81 L~~~gf~~~t~iQ~~aip~il~-g-~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreL 150 (744)
|...|| .+.|.+.+..++. . .-++++|+||||||.. +-.++..+. ..+.+++.|--..|+
T Consensus 59 l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i~------~~~~~iitiEdp~E~ 120 (264)
T cd01129 59 LEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSELN------TPEKNIITVEDPVEY 120 (264)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhhC------CCCCeEEEECCCcee
Confidence 455564 5556666655554 3 3588999999999985 344544441 124456666555553
No 417
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=87.83 E-value=1.5 Score=49.28 Aligned_cols=47 Identities=15% Similarity=0.263 Sum_probs=30.5
Q ss_pred HHHHHHHHHCCCCC--CcHHHH-----HHHHHHHcCCCEEEEccCCCchhHHhH
Q 004567 75 KKTKSGLKDAGFVK--MTDIQR-----ASLPHSLCGRDILGAAKTGSGKTLAFV 121 (744)
Q Consensus 75 ~~~~~~L~~~gf~~--~t~iQ~-----~aip~il~g~dvlv~a~TGSGKTla~l 121 (744)
+|+---|...||.. ++.-|+ .++|.+-.+.|++..||+|+|||..|.
T Consensus 174 EWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 174 EWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHH
Confidence 34444456677753 333222 223667778999999999999997544
No 418
>PRK13764 ATPase; Provisional
Probab=87.78 E-value=0.97 Score=53.15 Aligned_cols=42 Identities=24% Similarity=0.211 Sum_probs=27.5
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHH
Q 004567 102 CGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTREL 150 (744)
Q Consensus 102 ~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreL 150 (744)
.+++++++|+||||||.. +..++..+.. .+..++.+--++|+
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i~~------~~riV~TiEDp~El 297 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFYAD------MGKIVKTMESPRDL 297 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHhh------CCCEEEEECCCccc
Confidence 367899999999999984 4555555421 24444455555665
No 419
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=87.75 E-value=1.2 Score=50.43 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=24.6
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEc
Q 004567 102 CGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIIS 145 (744)
Q Consensus 102 ~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~ 145 (744)
.|.=+++.|++|+|||.. ++-+...+.. ..|..+++++
T Consensus 193 ~g~liviag~pg~GKT~~-al~ia~~~a~-----~~g~~v~~fS 230 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTL-ALNIAENVAL-----REGKPVLFFS 230 (421)
T ss_pred CCceEEEEeCCCCCHHHH-HHHHHHHHHH-----hCCCcEEEEE
Confidence 345588999999999984 4444433321 1356677776
No 420
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.69 E-value=2.7 Score=49.75 Aligned_cols=134 Identities=21% Similarity=0.273 Sum_probs=77.6
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCceEEE---------E
Q 004567 102 CGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGL---------L 172 (744)
Q Consensus 102 ~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~---------l 172 (744)
-|+.+.++||.|||||.+ +.+++++|.. ..|.-.|==+|-+++-..+.+ +.++ ..+-...+ .
T Consensus 493 pGe~vALVGPSGsGKSTi--asLL~rfY~P----tsG~IllDG~~i~~~~~~~lr--~~Ig-~V~QEPvLFs~sI~eNI~ 563 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTI--ASLLLRFYDP----TSGRILLDGVPISDINHKYLR--RKIG-LVGQEPVLFSGSIRENIA 563 (716)
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHHhcCC----CCCeEEECCeehhhcCHHHHH--HHee-eeeccceeecccHHHHHh
Confidence 488999999999999986 7788888764 333322222566666554444 2221 11111111 1
Q ss_pred EcCccChHHHH---------------HhcCCCcEEEEChHHH-----------HHHHhcCCCCCCCCceEEEEcCchhhh
Q 004567 173 IGGRRDVDMEK---------------EHVNELNILVCTPGRL-----------LQHMDETPNFDCSQLQILILDEADRIL 226 (744)
Q Consensus 173 ~Gg~~~~~~e~---------------~~~~~~~IlV~TPgrL-----------l~~l~~~~~~~~~~l~~lVlDEAh~ll 226 (744)
+| ..+...+. ..-.+++-.|+.-|.. .+.+ +++-.++|+|||-.-+
T Consensus 564 YG-~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARAL-------lr~P~VLILDEATSAL 635 (716)
T KOG0058|consen 564 YG-LDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARAL-------LRNPRVLILDEATSAL 635 (716)
T ss_pred cC-CCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHH-------hcCCCEEEEechhhhc
Confidence 22 11111111 0112455555555432 1222 3566789999999999
Q ss_pred ccchHHHHHHHHHhCCCCCcEEEEeec
Q 004567 227 DVGFKKALNAIVSQLPKHRQTFLFSAT 253 (744)
Q Consensus 227 d~gf~~~l~~Il~~lp~~~q~ll~SAT 253 (744)
|..-...++..+..+..+ ++++.-|.
T Consensus 636 DaeSE~lVq~aL~~~~~~-rTVlvIAH 661 (716)
T KOG0058|consen 636 DAESEYLVQEALDRLMQG-RTVLVIAH 661 (716)
T ss_pred chhhHHHHHHHHHHhhcC-CeEEEEeh
Confidence 988888888888777666 57776665
No 421
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=87.65 E-value=3.3 Score=39.35 Aligned_cols=39 Identities=26% Similarity=0.424 Sum_probs=29.1
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeec
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 253 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT 253 (744)
.+-.++++||--.-+|......+..++..+. .+++++..
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~---~til~~th 125 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEYP---GTVILVSH 125 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHcC---CEEEEEEC
Confidence 4567899999999888887888877777762 35555544
No 422
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=87.62 E-value=4.1 Score=41.66 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=33.2
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhh
Q 004567 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~ 162 (744)
|.-+++.|++|+|||...+--+.+.+ ..|..+++++-.. -..|+.+.+..++
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~-------~~g~~~~y~s~e~-~~~~l~~~~~~~~ 67 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGL-------KNGEKAMYISLEE-REERILGYAKSKG 67 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-------hCCCeEEEEECCC-CHHHHHHHHHHcC
Confidence 45688999999999875333333333 2356677776543 4566666666554
No 423
>PRK13695 putative NTPase; Provisional
Probab=87.54 E-value=4.6 Score=39.54 Aligned_cols=16 Identities=31% Similarity=0.245 Sum_probs=13.7
Q ss_pred CEEEEccCCCchhHHh
Q 004567 105 DILGAAKTGSGKTLAF 120 (744)
Q Consensus 105 dvlv~a~TGSGKTla~ 120 (744)
.+++.|+.|+|||...
T Consensus 2 ~i~ltG~~G~GKTTll 17 (174)
T PRK13695 2 KIGITGPPGVGKTTLV 17 (174)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999853
No 424
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=87.53 E-value=1.4 Score=48.90 Aligned_cols=43 Identities=16% Similarity=0.064 Sum_probs=26.6
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHH
Q 004567 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTREL 150 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreL 150 (744)
+..++++||||||||.. +-.++..+... ..+.+++.|=-..|+
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~~----~~~~~IvtiEdp~E~ 191 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGET----YPDRKIVTYEDPIEY 191 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHhc----CCCceEEEEecCchh
Confidence 45689999999999985 45555554321 123445655555444
No 425
>PF12846 AAA_10: AAA-like domain
Probab=87.51 E-value=0.76 Score=48.67 Aligned_cols=43 Identities=33% Similarity=0.463 Sum_probs=30.9
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHH
Q 004567 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELAD 152 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~ 152 (744)
+.++++.|+||||||.... .++..++. .|..++|+=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIR------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHH------cCCCEEEEcCCchHHH
Confidence 3579999999999998655 55555544 3567788877766554
No 426
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=87.47 E-value=8.5 Score=42.70 Aligned_cols=109 Identities=14% Similarity=0.189 Sum_probs=57.5
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHH
Q 004567 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDME 182 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e 182 (744)
.+.+.+.|+.|+|||+. +..++..- +...+.+ ++.-+...++...+..+. |+...+.
T Consensus 62 ~~GlYl~G~vG~GKT~L-----md~f~~~l-p~~~k~R----~HFh~Fm~~vh~~l~~~~-----------~~~~~l~-- 118 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTML-----MDLFYDSL-PIKRKRR----VHFHEFMLDVHSRLHQLR-----------GQDDPLP-- 118 (362)
T ss_pred CceEEEECCCCCchhHH-----HHHHHHhC-Ccccccc----ccccHHHHHHHHHHHHHh-----------CCCccHH--
Confidence 46799999999999984 33333321 1111111 244566666666666553 2111111
Q ss_pred HHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHhC-CCCCcEEEEeeccChh
Q 004567 183 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL-PKHRQTFLFSATQTKS 257 (744)
Q Consensus 183 ~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~l-p~~~q~ll~SAT~~~~ 257 (744)
.+.+.+. ....+|+|||.| +-|-+-.-.+..+++.+ ....-+|..|-+.|..
T Consensus 119 ---------------~va~~l~-------~~~~lLcfDEF~-V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 119 ---------------QVADELA-------KESRLLCFDEFQ-VTDIADAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred ---------------HHHHHHH-------hcCCEEEEeeee-ccchhHHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 1222222 455689999999 33443334444444443 3345566666666654
No 427
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=87.35 E-value=3.5 Score=48.50 Aligned_cols=41 Identities=37% Similarity=0.396 Sum_probs=29.2
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeec
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 253 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT 253 (744)
.+-.++|+|||-.-+|..-...+...+..+.+.+ ++++=|.
T Consensus 482 ~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~r-T~iiIaH 522 (567)
T COG1132 482 RNPPILILDEATSALDTETEALIQDALKKLLKGR-TTLIIAH 522 (567)
T ss_pred cCCCEEEEeccccccCHHhHHHHHHHHHHHhcCC-EEEEEec
Confidence 3447899999999999887777777777665554 4444333
No 428
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=87.34 E-value=0.45 Score=50.29 Aligned_cols=44 Identities=30% Similarity=0.312 Sum_probs=29.3
Q ss_pred HcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHH
Q 004567 101 LCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELA 151 (744)
Q Consensus 101 l~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa 151 (744)
..+.+++++|+||||||.. +-.++..+- ....+++++-.+.|+.
T Consensus 125 ~~~~~ili~G~tGSGKTT~-l~all~~i~------~~~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTL-LNALLEEIP------PEDERIVTIEDPPELR 168 (270)
T ss_dssp HTTEEEEEEESTTSSHHHH-HHHHHHHCH------TTTSEEEEEESSS-S-
T ss_pred ccceEEEEECCCccccchH-HHHHhhhcc------ccccceEEecccccee
Confidence 3467899999999999985 444444431 1236678888787764
No 429
>PRK10436 hypothetical protein; Provisional
Probab=87.30 E-value=1.2 Score=51.08 Aligned_cols=38 Identities=37% Similarity=0.402 Sum_probs=25.1
Q ss_pred cHHHHHHHHHHHc--CCCEEEEccCCCchhHHhHHHHHHHH
Q 004567 90 TDIQRASLPHSLC--GRDILGAAKTGSGKTLAFVIPVLEKL 128 (744)
Q Consensus 90 t~iQ~~aip~il~--g~dvlv~a~TGSGKTla~llpil~~L 128 (744)
.+.|.+.+..++. +.-+|++||||||||.+ +..++..+
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~ 242 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTL 242 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhh
Confidence 4445555555443 34588999999999986 34455554
No 430
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=87.22 E-value=1.2 Score=51.46 Aligned_cols=44 Identities=27% Similarity=0.357 Sum_probs=28.8
Q ss_pred HHHCCCCCCcHHHHHHHHHHHcCCC--EEEEccCCCchhHHhHHHHHHHH
Q 004567 81 LKDAGFVKMTDIQRASLPHSLCGRD--ILGAAKTGSGKTLAFVIPVLEKL 128 (744)
Q Consensus 81 L~~~gf~~~t~iQ~~aip~il~g~d--vlv~a~TGSGKTla~llpil~~L 128 (744)
|..+|| ++-|.+.+..++.... ++++||||||||.. +..++..+
T Consensus 221 l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~l 266 (486)
T TIGR02533 221 LETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSRL 266 (486)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhcc
Confidence 444554 5667777766665433 78999999999986 33344443
No 431
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=87.20 E-value=5 Score=48.87 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=14.7
Q ss_pred CCEEEEccCCCchhHH
Q 004567 104 RDILGAAKTGSGKTLA 119 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla 119 (744)
.++|+.||+|+|||..
T Consensus 204 ~n~lL~G~pG~GKT~l 219 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAI 219 (731)
T ss_pred CceEEECCCCCCHHHH
Confidence 5799999999999986
No 432
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=87.01 E-value=4.1 Score=50.48 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=14.9
Q ss_pred CCEEEEccCCCchhHHh
Q 004567 104 RDILGAAKTGSGKTLAF 120 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~ 120 (744)
.++|+.||+|+|||...
T Consensus 195 ~n~lL~G~pGvGKT~l~ 211 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIV 211 (852)
T ss_pred CceEEEcCCCCCHHHHH
Confidence 57999999999999863
No 433
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=86.99 E-value=4.2 Score=46.21 Aligned_cols=113 Identities=17% Similarity=0.118 Sum_probs=53.3
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHH
Q 004567 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDME 182 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e 182 (744)
|.=+++.|++|+|||.. .+-++..+.. ..|..+++++.-- -..|+...+-.... ++....+..+.-.....
T Consensus 195 G~l~vi~g~pg~GKT~~-~l~~a~~~a~-----~~g~~vl~~SlEm-~~~~i~~R~~~~~~--~v~~~~~~~g~l~~~~~ 265 (434)
T TIGR00665 195 SDLIILAARPSMGKTAF-ALNIAENAAI-----KEGKPVAFFSLEM-SAEQLAMRMLSSES--RVDSQKLRTGKLSDEDW 265 (434)
T ss_pred CeEEEEEeCCCCChHHH-HHHHHHHHHH-----hCCCeEEEEeCcC-CHHHHHHHHHHHhc--CCCHHHhccCCCCHHHH
Confidence 34478999999999974 4444433322 1355677776432 23333333332221 22211111111111111
Q ss_pred ------HHhcCCCcEEEE-----ChHHHHHHHhcCCCCCCCCceEEEEcCchhhh
Q 004567 183 ------KEHVNELNILVC-----TPGRLLQHMDETPNFDCSQLQILILDEADRIL 226 (744)
Q Consensus 183 ------~~~~~~~~IlV~-----TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~ll 226 (744)
...+....+.|. |+..+...+.... .-..+++||||=.+.|.
T Consensus 266 ~~~~~a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~--~~~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 266 EKLTSAAGKLSEAPLYIDDTPGLTITELRAKARRLK--REHGLGLIVIDYLQLMS 318 (434)
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchHhcC
Confidence 122234455552 4444544333211 11347899999888764
No 434
>PRK07413 hypothetical protein; Validated
Probab=86.97 E-value=10 Score=42.15 Aligned_cols=54 Identities=20% Similarity=0.399 Sum_probs=43.6
Q ss_pred CCceEEEEcCchhhhccch--HHHHHHHHHhCCCCCcEEEEeeccChhHHHHHHHh
Q 004567 212 SQLQILILDEADRILDVGF--KKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLS 265 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf--~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la~~~ 265 (744)
..+++|||||+-..++.|+ ...+..++...|...-+|+.--..|..+..++.+.
T Consensus 124 g~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~ap~~Lie~ADlV 179 (382)
T PRK07413 124 GLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRAAPQSLLDIADLH 179 (382)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHhCCee
Confidence 5789999999998888874 35677788888888888888888888888877653
No 435
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=86.75 E-value=2.2 Score=46.63 Aligned_cols=40 Identities=15% Similarity=0.266 Sum_probs=26.4
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeec
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 253 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT 253 (744)
...+++||||||+|.... ...+.++++.-|....+++ .++
T Consensus 109 ~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il-~t~ 148 (329)
T PRK08058 109 SNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAIL-LTE 148 (329)
T ss_pred cCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEE-EeC
Confidence 567899999999886543 4456666666555554554 444
No 436
>PRK10865 protein disaggregation chaperone; Provisional
Probab=86.60 E-value=4.2 Score=50.34 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchhHH
Q 004567 104 RDILGAAKTGSGKTLA 119 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla 119 (744)
.++|+.||+|+|||..
T Consensus 200 ~n~lL~G~pGvGKT~l 215 (857)
T PRK10865 200 NNPVLIGEPGVGKTAI 215 (857)
T ss_pred CceEEECCCCCCHHHH
Confidence 4799999999999986
No 437
>PHA00729 NTP-binding motif containing protein
Probab=86.49 E-value=3.6 Score=42.42 Aligned_cols=15 Identities=40% Similarity=0.357 Sum_probs=13.7
Q ss_pred CEEEEccCCCchhHH
Q 004567 105 DILGAAKTGSGKTLA 119 (744)
Q Consensus 105 dvlv~a~TGSGKTla 119 (744)
++++.|++|+|||..
T Consensus 19 nIlItG~pGvGKT~L 33 (226)
T PHA00729 19 SAVIFGKQGSGKTTY 33 (226)
T ss_pred EEEEECCCCCCHHHH
Confidence 799999999999974
No 438
>PRK10689 transcription-repair coupling factor; Provisional
Probab=86.49 E-value=3.6 Score=52.40 Aligned_cols=77 Identities=13% Similarity=0.215 Sum_probs=64.1
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhhCC--CCcEEEeeCCCCHHHHHHHHHHHhc-cCCeEEEcc-ccccccccCCCCcEE
Q 004567 310 LNSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD-VASRGLDFNKAVDWV 385 (744)
Q Consensus 310 ~~~k~IVF~~s~~~v~~l~~~L~~l~~--g~~v~~lhg~~~~~~R~~i~~~F~~-~~~VLVaTd-v~arGlDi~p~V~~V 385 (744)
.+.+++|.++|+.-|..++..|...+. ++.+..++|..+..++..++..... ...|+|+|. .+...+.+ ..+.+|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~-~~L~lL 726 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKW-KDLGLL 726 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCH-hhCCEE
Confidence 367899999999999999999987654 3567889999999999999988887 789999995 45556777 778887
Q ss_pred EE
Q 004567 386 VQ 387 (744)
Q Consensus 386 I~ 387 (744)
|.
T Consensus 727 VI 728 (1147)
T PRK10689 727 IV 728 (1147)
T ss_pred EE
Confidence 75
No 439
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=86.38 E-value=1.3 Score=48.92 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=18.9
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHH
Q 004567 102 CGRDILGAAKTGSGKTLAFVIPVLEKL 128 (744)
Q Consensus 102 ~g~dvlv~a~TGSGKTla~llpil~~L 128 (744)
.+.-++++||||||||.. +-.++..+
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 456799999999999985 34444443
No 440
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=86.31 E-value=2.4 Score=45.45 Aligned_cols=16 Identities=31% Similarity=0.306 Sum_probs=14.2
Q ss_pred CCEEEEccCCCchhHH
Q 004567 104 RDILGAAKTGSGKTLA 119 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla 119 (744)
.++++.||.|+|||..
T Consensus 31 ~~~ll~Gp~G~GKT~l 46 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTL 46 (305)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4699999999999975
No 441
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.31 E-value=7.8 Score=44.38 Aligned_cols=68 Identities=24% Similarity=0.117 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHH----HHHcC--------CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCC
Q 004567 71 LPISKKTKSGLKDAGFVKMTDIQRASLP----HSLCG--------RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDG 138 (744)
Q Consensus 71 l~ls~~~~~~L~~~gf~~~t~iQ~~aip----~il~g--------~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g 138 (744)
+|.++.-+......|.....+.=.+.+. .+.+- ..+|+.||.|||||..+.-.++. .+-
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~---------S~F 564 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS---------SDF 564 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh---------cCC
Confidence 5788888888877776654443333332 22111 35899999999999742222211 234
Q ss_pred ceEEEEcCC
Q 004567 139 VGSIIISPT 147 (744)
Q Consensus 139 ~~aLIl~Pt 147 (744)
+.+=|++|.
T Consensus 565 PFvKiiSpe 573 (744)
T KOG0741|consen 565 PFVKIISPE 573 (744)
T ss_pred CeEEEeChH
Confidence 556677765
No 442
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=86.29 E-value=6 Score=44.32 Aligned_cols=130 Identities=21% Similarity=0.255 Sum_probs=78.5
Q ss_pred EEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEE-cCChHHHHHHHHHHHHhhccCCceEEEEEcCcc-ChHHHH
Q 004567 106 ILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIII-SPTRELADQLFDVLKAVGKHHNFSAGLLIGGRR-DVDMEK 183 (744)
Q Consensus 106 vlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl-~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~-~~~~e~ 183 (744)
++++|=-|||||++ ..=|..++.. .|.+++++ |-|.--|. ++.|+.++...++.+... +.+. ++..-
T Consensus 103 ImmvGLQGsGKTTt--~~KLA~~lkk-----~~~kvllVaaD~~RpAA--~eQL~~La~q~~v~~f~~-~~~~~Pv~Ia- 171 (451)
T COG0541 103 ILMVGLQGSGKTTT--AGKLAKYLKK-----KGKKVLLVAADTYRPAA--IEQLKQLAEQVGVPFFGS-GTEKDPVEIA- 171 (451)
T ss_pred EEEEeccCCChHhH--HHHHHHHHHH-----cCCceEEEecccCChHH--HHHHHHHHHHcCCceecC-CCCCCHHHHH-
Confidence 77899999999997 3333334433 24444444 44433333 466777776666665444 2122 22110
Q ss_pred HhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhh-ccchHHHHHHHHHhCCCCCcEEEEeeccChhHHHHH
Q 004567 184 EHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRIL-DVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLA 262 (744)
Q Consensus 184 ~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~ll-d~gf~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~la 262 (744)
-.-++... ...++++|+|=|-|+- +...-..+..|-..+.+.--++.+-|+........+
T Consensus 172 -------------k~al~~ak------~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A 232 (451)
T COG0541 172 -------------KAALEKAK------EEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTA 232 (451)
T ss_pred -------------HHHHHHHH------HcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHH
Confidence 11122222 2456788888887654 455677788888888777777888888888877777
Q ss_pred HHh
Q 004567 263 RLS 265 (744)
Q Consensus 263 ~~~ 265 (744)
..+
T Consensus 233 ~aF 235 (451)
T COG0541 233 KAF 235 (451)
T ss_pred HHH
Confidence 655
No 443
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=86.17 E-value=6.5 Score=45.36 Aligned_cols=147 Identities=14% Similarity=0.116 Sum_probs=83.8
Q ss_pred CCcHHHHHHHHHHHc------C----CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHH
Q 004567 88 KMTDIQRASLPHSLC------G----RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDV 157 (744)
Q Consensus 88 ~~t~iQ~~aip~il~------g----~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~ 157 (744)
.+-|||.-.+-.++- | +-.++..|-|-|||.....-++..++.. ...|....|++|+.+-+.+.+..
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~---~~~~~~~~i~A~s~~qa~~~F~~ 137 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLN---WRSGAGIYILAPSVEQAANSFNP 137 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhh---hhcCCcEEEEeccHHHHHHhhHH
Confidence 688999999988872 2 3478889999999975432233222222 14678899999999999999988
Q ss_pred HHHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHH---HHHHHhc-CCCCCCCCceEEEEcCchhhhccchHHH
Q 004567 158 LKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGR---LLQHMDE-TPNFDCSQLQILILDEADRILDVGFKKA 233 (744)
Q Consensus 158 l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgr---Ll~~l~~-~~~~~~~~l~~lVlDEAh~lld~gf~~~ 233 (744)
++....... +. ........+....|.+. .+..+.. ....+-.+..+.|+||.|.....+ ..
T Consensus 138 ar~mv~~~~-----------~l--~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~ 202 (546)
T COG4626 138 ARDMVKRDD-----------DL--RDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DM 202 (546)
T ss_pred HHHHHHhCc-----------ch--hhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HH
Confidence 887654322 00 00000011111111111 1111111 122334466789999999876653 44
Q ss_pred HHHHHHhCC--CCCcEEEEee
Q 004567 234 LNAIVSQLP--KHRQTFLFSA 252 (744)
Q Consensus 234 l~~Il~~lp--~~~q~ll~SA 252 (744)
+..+..-+. ++.+++..|.
T Consensus 203 ~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 203 YSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHHHHhhhccCcCceEEEEec
Confidence 555554443 3455666554
No 444
>PRK07004 replicative DNA helicase; Provisional
Probab=86.12 E-value=1.3 Score=50.78 Aligned_cols=113 Identities=21% Similarity=0.277 Sum_probs=53.5
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHH-HhhccCCceEEEE-EcCccChH
Q 004567 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLK-AVGKHHNFSAGLL-IGGRRDVD 180 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~-~~~~~~~~~~~~l-~Gg~~~~~ 180 (744)
|.=+++.|.+|+|||.. .+-+...+... .|..+++++.- .-..|+...+- ..+ ++....+ .|.-....
T Consensus 213 g~liviaarpg~GKT~~-al~ia~~~a~~-----~~~~v~~fSlE-M~~~ql~~R~la~~~---~v~~~~i~~g~l~~~e 282 (460)
T PRK07004 213 GELIIVAGRPSMGKTAF-SMNIGEYVAVE-----YGLPVAVFSME-MPGTQLAMRMLGSVG---RLDQHRMRTGRLTDED 282 (460)
T ss_pred CceEEEEeCCCCCccHH-HHHHHHHHHHH-----cCCeEEEEeCC-CCHHHHHHHHHHhhc---CCCHHHHhcCCCCHHH
Confidence 44478899999999984 44444333221 35567776532 12233333321 111 1211111 12111111
Q ss_pred H-----HHHhcCCCcEEEE-----ChHHHHHHHhcCCCCCCCCceEEEEcCchhhh
Q 004567 181 M-----EKEHVNELNILVC-----TPGRLLQHMDETPNFDCSQLQILILDEADRIL 226 (744)
Q Consensus 181 ~-----e~~~~~~~~IlV~-----TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~ll 226 (744)
+ ....+...++.|. |+..+......... ....+++||||=.+.|.
T Consensus 283 ~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~-~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 283 WPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLAR-QCGKLGLIIIDYLQLMS 337 (460)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEChhhhcc
Confidence 1 1123345667663 44444443332110 11357899999998775
No 445
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=86.10 E-value=0.64 Score=55.49 Aligned_cols=50 Identities=30% Similarity=0.294 Sum_probs=38.7
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhh
Q 004567 104 RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~ 162 (744)
.++++.||||||||..|++|-+-.+ . ..+||+=|--|+...+....++.|
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~--------~-gS~VV~DpKGE~~~~Ta~~R~~~G 189 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF--------K-GSVIALDVKGELFELTSRARKASG 189 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC--------C-CCEEEEeCCchHHHHHHHHHHhCC
Confidence 4899999999999999999986431 2 358888899999876666555443
No 446
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=86.02 E-value=1.5 Score=53.93 Aligned_cols=144 Identities=22% Similarity=0.188 Sum_probs=80.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCC-CcHHHHHHHHHHH-cCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceE
Q 004567 64 GSTRFDQLPISKKTKSGLKDAGFVK-MTDIQRASLPHSL-CGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGS 141 (744)
Q Consensus 64 ~~~~F~~l~ls~~~~~~L~~~gf~~-~t~iQ~~aip~il-~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~a 141 (744)
....|++++....+..-|+++-+.. ++|-+-. +..+ --+-+|.++|.|+|||+.. -++..-.
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~--~~~itpPrgvL~~GppGTGkTl~a--raLa~~~------------ 323 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFD--NFNITPPRGVLFHGPPGTGKTLMA--RALAAAC------------ 323 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhh--hcccCCCcceeecCCCCCchhHHH--Hhhhhhh------------
Confidence 4667999998899999998875432 2222211 1222 2366999999999999852 1111100
Q ss_pred EEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcC
Q 004567 142 IIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDE 221 (744)
Q Consensus 142 LIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDE 221 (744)
...-+++. ...--| .+. ..--|+..+|=+.++.+. ..-....++.+||
T Consensus 324 -------------s~~~~kis------ffmrkg--aD~---------lskwvgEaERqlrllFee--A~k~qPSIIffde 371 (1080)
T KOG0732|consen 324 -------------SRGNRKIS------FFMRKG--ADC---------LSKWVGEAERQLRLLFEE--AQKTQPSIIFFDE 371 (1080)
T ss_pred -------------cccccccc------hhhhcC--chh---------hccccCcHHHHHHHHHHH--HhccCceEEeccc
Confidence 00001110 000000 000 112356677755555443 1225667899999
Q ss_pred chhhh-------ccc---hHHHHHHHHHhCCCCCcEEEEeeccC
Q 004567 222 ADRIL-------DVG---FKKALNAIVSQLPKHRQTFLFSATQT 255 (744)
Q Consensus 222 Ah~ll-------d~g---f~~~l~~Il~~lp~~~q~ll~SAT~~ 255 (744)
+|-+. +.- ...++..++.-++...|+++.+||.-
T Consensus 372 IdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnR 415 (1080)
T KOG0732|consen 372 IDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNR 415 (1080)
T ss_pred cccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCC
Confidence 99322 222 33455556666788899999999943
No 447
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=85.92 E-value=8.1 Score=45.15 Aligned_cols=130 Identities=20% Similarity=0.277 Sum_probs=79.0
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHH
Q 004567 104 RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEK 183 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~ 183 (744)
+-.+..-|==-|||+ |++|++..++.. ..|..+.|++.-+..+.-+++++..-+.. .+....++.
T Consensus 203 kaTVFLVPRRHGKTW-f~VpiIsllL~s----~~gI~IGYvAHqKhvs~~Vf~EI~~~lrr-wF~~~~vi~--------- 267 (668)
T PHA03372 203 KATVFLVPRRHGKTW-FIIPIISFLLKN----IIGISIGYVAHQKHVSQFVLKEVEFRCRR-MFPRKHTIE--------- 267 (668)
T ss_pred cceEEEecccCCcee-hHHHHHHHHHHh----hcCceEEEEeeHHHHHHHHHHHHHHHHhh-hcCccceee---------
Confidence 446777889999998 799999998774 56899999999998887766655432211 011000011
Q ss_pred HhcCCCcEEEEChHHH----HHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHhCC-CCCcEEEEeecc
Q 004567 184 EHVNELNILVCTPGRL----LQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP-KHRQTFLFSATQ 254 (744)
Q Consensus 184 ~~~~~~~IlV~TPgrL----l~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp-~~~q~ll~SAT~ 254 (744)
..+-.|.+.-||.= .....+.....=.++.++++||||-+- ...+..|+..+. +++.+|+.|.|-
T Consensus 268 --~k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS~N 337 (668)
T PHA03372 268 --NKDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISSTN 337 (668)
T ss_pred --ecCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeCCC
Confidence 01123444444321 000111112333577899999999654 355666666654 467888888884
No 448
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=85.67 E-value=4 Score=48.01 Aligned_cols=40 Identities=25% Similarity=0.430 Sum_probs=23.0
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeec
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 253 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT 253 (744)
....++||||+|++.... ...+...+...|. .-+++|.+|
T Consensus 118 ~~~KVvIIDEa~~Ls~~a-~naLLK~LEepp~-~~vfI~~tt 157 (563)
T PRK06647 118 SRYRVYIIDEVHMLSNSA-FNALLKTIEEPPP-YIVFIFATT 157 (563)
T ss_pred CCCEEEEEEChhhcCHHH-HHHHHHhhccCCC-CEEEEEecC
Confidence 677899999999886533 2333344444333 333444444
No 449
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=85.64 E-value=4.5 Score=46.34 Aligned_cols=90 Identities=18% Similarity=0.198 Sum_probs=51.4
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHH
Q 004567 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDME 182 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e 182 (744)
|.-+++.|++|+|||...+ -++..+.. .+.+++|++.- +-..|+...+.+++-. .....+.. .
T Consensus 94 GsvilI~G~pGsGKTTL~l-q~a~~~a~------~g~kvlYvs~E-Es~~qi~~ra~rlg~~--~~~l~~~~-e------ 156 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLL-QVACQLAK------NQMKVLYVSGE-ESLQQIKMRAIRLGLP--EPNLYVLS-E------ 156 (454)
T ss_pred CeEEEEEcCCCCCHHHHHH-HHHHHHHh------cCCcEEEEECc-CCHHHHHHHHHHcCCC--hHHeEEcC-C------
Confidence 4558899999999998543 33333322 24568888764 4456666655555311 11111111 0
Q ss_pred HHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhh
Q 004567 183 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRIL 226 (744)
Q Consensus 183 ~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~ll 226 (744)
.+.+.+...+.. .+.++||||....+.
T Consensus 157 -----------~~~~~I~~~i~~------~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 157 -----------TNWEQICANIEE------ENPQACVIDSIQTLY 183 (454)
T ss_pred -----------CCHHHHHHHHHh------cCCcEEEEecchhhc
Confidence 134555555543 246789999998764
No 450
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=85.51 E-value=3.9 Score=47.40 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=30.8
Q ss_pred cCCCCCCCCCCCHHHHHHHHHC-C-CCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHH
Q 004567 63 VGSTRFDQLPISKKTKSGLKDA-G-FVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLA 119 (744)
Q Consensus 63 ~~~~~F~~l~ls~~~~~~L~~~-g-f~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla 119 (744)
....+|+++.-.+.+...|... . +..+..++... ....+.+|+.||+|+|||+.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~l 104 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLL 104 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHH
Confidence 3456788887666665555431 1 11222222111 11135699999999999985
No 451
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=85.47 E-value=19 Score=39.21 Aligned_cols=54 Identities=20% Similarity=0.334 Sum_probs=29.6
Q ss_pred CCceEEEEcCchhhh-ccchHHHHHHHHHhC------CCCCcEEEEeeccChhHHHHHHHh
Q 004567 212 SQLQILILDEADRIL-DVGFKKALNAIVSQL------PKHRQTFLFSATQTKSVQDLARLS 265 (744)
Q Consensus 212 ~~l~~lVlDEAh~ll-d~gf~~~l~~Il~~l------p~~~q~ll~SAT~~~~v~~la~~~ 265 (744)
.++++||||=+-++. +......+..+...+ .+...++.++||.....-..+..+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 456788888777654 222334444444322 223357889999665443444433
No 452
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=85.31 E-value=3.1 Score=48.48 Aligned_cols=70 Identities=20% Similarity=0.398 Sum_probs=57.6
Q ss_pred EEEEecchHHHHHHHHHHHhhCC---CCcEEEeeCCCCHHHHHHHHHHHhccCCeEEEcc-----ccccc-cccCCCCcE
Q 004567 314 ILVFLTSCKQVKYVFEAFKKLRP---GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASRG-LDFNKAVDW 384 (744)
Q Consensus 314 ~IVF~~s~~~v~~l~~~L~~l~~---g~~v~~lhg~~~~~~R~~i~~~F~~~~~VLVaTd-----v~arG-lDi~p~V~~ 384 (744)
+||+++|++-|..+++.+..+.. ++.++.++|+++...+...+.. +..|||||+ .+.+| +++ ..|.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~~~ivVaTPGRllD~i~~~~l~l-~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---GVDIVVATPGRLLDLIKRGKLDL-SGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---CCCEEEECccHHHHHHHcCCcch-hhcCE
Confidence 89999999999999999888643 5678999999988777655544 689999996 46666 888 78999
Q ss_pred EEE
Q 004567 385 VVQ 387 (744)
Q Consensus 385 VI~ 387 (744)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 885
No 453
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.29 E-value=0.57 Score=50.10 Aligned_cols=25 Identities=44% Similarity=0.522 Sum_probs=18.2
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHH
Q 004567 102 CGRDILGAAKTGSGKTLAFVIPVLEKL 128 (744)
Q Consensus 102 ~g~dvlv~a~TGSGKTla~llpil~~L 128 (744)
...|+++.||||||||+. .-.|..+
T Consensus 96 ~KSNILLiGPTGsGKTlL--AqTLAk~ 120 (408)
T COG1219 96 SKSNILLIGPTGSGKTLL--AQTLAKI 120 (408)
T ss_pred eeccEEEECCCCCcHHHH--HHHHHHH
Confidence 346799999999999984 3344443
No 454
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=85.23 E-value=2.5 Score=51.54 Aligned_cols=52 Identities=19% Similarity=0.244 Sum_probs=29.9
Q ss_pred CCCCCCCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHH
Q 004567 65 STRFDQLPISKKTKSGLKDA---GFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLA 119 (744)
Q Consensus 65 ~~~F~~l~ls~~~~~~L~~~---gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla 119 (744)
...|.+++....+...|... .+..+.-++... +...+.+++.||+|||||+.
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g---~~~~~giLL~GppGtGKT~l 503 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG---IRPPKGVLLFGPPGTGKTLL 503 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEECCCCCCHHHH
Confidence 44677777667777666542 111111111110 11135699999999999985
No 455
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=85.21 E-value=10 Score=43.03 Aligned_cols=178 Identities=16% Similarity=0.226 Sum_probs=94.5
Q ss_pred CCc-EEEEecchHHHHHHHHHHHhhC--CCCcEEEeeCCCCHHHHHHHHHHHhccCCeEEEcc------ccccccccCCC
Q 004567 311 NSK-ILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD------VASRGLDFNKA 381 (744)
Q Consensus 311 ~~k-~IVF~~s~~~v~~l~~~L~~l~--~g~~v~~lhg~~~~~~R~~i~~~F~~~~~VLVaTd------v~arGlDi~p~ 381 (744)
.++ .+|.|+|+.-|..++...++.. -++.++++||+++..++...++ ...-++|||. +--.|+|| ..
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk---~g~EivVaTPgRlid~VkmKatn~-~r 370 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK---EGAEIVVATPGRLIDMVKMKATNL-SR 370 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh---cCCeEEEechHHHHHHHHhhcccc-ee
Confidence 344 4567789887777665554431 3788999999999877655544 4678999996 22457888 77
Q ss_pred CcEEEE------cCCC--CCHhHHHHHhhccCcCCCCCeEEEEeCcchHHHHHHHHHc----CCCcccccccccccccHH
Q 004567 382 VDWVVQ------VDCP--EDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA----KIPIHFTKANTKRLQPVS 449 (744)
Q Consensus 382 V~~VI~------~d~P--~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~~l~~l~~~----~i~i~~~~~~~~~~~~i~ 449 (744)
|.++|. ||+- .-+.+..|-| | ..-.+++|- ..-...++.|.+. .|.+..-.+... -..|.
T Consensus 371 vS~LV~DEadrmfdmGfe~qVrSI~~hi----r--pdrQtllFs-aTf~~kIe~lard~L~dpVrvVqg~vgea-n~dIT 442 (731)
T KOG0339|consen 371 VSYLVLDEADRMFDMGFEPQVRSIKQHI----R--PDRQTLLFS-ATFKKKIEKLARDILSDPVRVVQGEVGEA-NEDIT 442 (731)
T ss_pred eeEEEEechhhhhccccHHHHHHHHhhc----C--CcceEEEee-ccchHHHHHHHHHHhcCCeeEEEeehhcc-ccchh
Confidence 888775 2221 1222333322 2 233455553 3333344444443 222222222111 11122
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHHHHHhccCCCcccccccCCCHHHHHHhcCCCCC
Q 004567 450 GLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMT 505 (744)
Q Consensus 450 ~~l~~~~~~~~~l~~~a~~af~sy~rs~~~~~~~~if~~~~l~~~~~a~s~gl~~~ 505 (744)
+ .-..|...+.-..+..+..+++.- ...--+|--++.+.+++++-|-|.+-
T Consensus 443 Q-~V~V~~s~~~Kl~wl~~~L~~f~S----~gkvlifVTKk~~~e~i~a~Lklk~~ 493 (731)
T KOG0339|consen 443 Q-TVSVCPSEEKKLNWLLRHLVEFSS----EGKVLIFVTKKADAEEIAANLKLKGF 493 (731)
T ss_pred h-eeeeccCcHHHHHHHHHHhhhhcc----CCcEEEEEeccCCHHHHHHHhccccc
Confidence 1 112222322222222222333322 23344788899999999998877664
No 456
>PHA00350 putative assembly protein
Probab=85.19 E-value=2.8 Score=46.86 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=16.9
Q ss_pred EEEEccCCCchhHHhHHH-HHHHH
Q 004567 106 ILGAAKTGSGKTLAFVIP-VLEKL 128 (744)
Q Consensus 106 vlv~a~TGSGKTla~llp-il~~L 128 (744)
.++.|..|||||+..+.- ++..+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~pal 27 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPAL 27 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHH
Confidence 478999999999976653 44444
No 457
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=85.08 E-value=3.8 Score=40.65 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=77.5
Q ss_pred EEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHH-HHHHHHHhhccCCceEEEEEcCccChHHHHH
Q 004567 106 ILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQ-LFDVLKAVGKHHNFSAGLLIGGRRDVDMEKE 184 (744)
Q Consensus 106 vlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Q-i~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~ 184 (744)
+.+.-..|=|||.|++--++..+ ..|.+++|+-=-+--... -...+..+. ++.... .|.+.....
T Consensus 24 i~VYtGdGKGKTTAAlGlalRAa-------G~G~rV~iiQFlKg~~~~GE~~~l~~~~---~v~~~~-~g~~~~~~~--- 89 (178)
T PRK07414 24 VQVFTSSQRNFFTSVMAQALRIA-------GQGTPVLIVQFLKGGIQQGPDRPIQLGQ---NLDWVR-CDLPRCLDT--- 89 (178)
T ss_pred EEEEeCCCCCchHHHHHHHHHHh-------cCCCEEEEEEEecCCCcchHHHHHHhCC---CcEEEE-CCCCCeeeC---
Confidence 66778889999999888888776 567888877522211000 011122221 122111 111111100
Q ss_pred hcCCCc-EEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccch--HHHHHHHHHhCCCCCcEEEEeeccChhHHHH
Q 004567 185 HVNELN-ILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGF--KKALNAIVSQLPKHRQTFLFSATQTKSVQDL 261 (744)
Q Consensus 185 ~~~~~~-IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf--~~~l~~Il~~lp~~~q~ll~SAT~~~~v~~l 261 (744)
.... .-.......++.... .+.-..+++|||||+=..++.|+ ...+..++...|...-+|+..-..|+.+.++
T Consensus 90 --~~~~~~~~~~~~~~~~~a~~--~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~ 165 (178)
T PRK07414 90 --PHLDESEKKALQELWQYTQA--VVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAI 165 (178)
T ss_pred --CCcCHHHHHHHHHHHHHHHH--HHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHh
Confidence 0000 000011122222211 12235789999999998888875 4667888888888888888877888887776
Q ss_pred HH
Q 004567 262 AR 263 (744)
Q Consensus 262 a~ 263 (744)
+.
T Consensus 166 AD 167 (178)
T PRK07414 166 AD 167 (178)
T ss_pred CC
Confidence 64
No 458
>PHA03311 helicase-primase subunit BBLF4; Provisional
Probab=84.91 E-value=9.6 Score=45.46 Aligned_cols=43 Identities=26% Similarity=0.361 Sum_probs=33.0
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHH
Q 004567 105 DILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLK 159 (744)
Q Consensus 105 dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~ 159 (744)
-+++.|..|+|||.+ ++.|... ..++|..||+--|+.+...|+
T Consensus 73 ~~~itG~AGsGKst~-----i~~l~~~-------l~cvitg~T~vAAqN~~~~L~ 115 (828)
T PHA03311 73 VYLITGTAGAGKSTS-----IQTLNEN-------LDCVITGATRVAAQNLSAKLS 115 (828)
T ss_pred EEEEecCCCCChHHH-----HHHHHHh-------cCEEEEcchHHHHHhhhcccc
Confidence 478999999999997 4444322 358999999998888877555
No 459
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=84.86 E-value=1.5 Score=53.10 Aligned_cols=74 Identities=22% Similarity=0.332 Sum_probs=58.9
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhh
Q 004567 84 AGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162 (744)
Q Consensus 84 ~gf~~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~ 162 (744)
.++...||-|-++|..-.+-.+.++++|+|+|||-. ..-++..+|.+ ....+++|++.+..-.+|.++.+.++-
T Consensus 734 ~n~v~ft~~qveai~sg~qpgltmvvgppgtgktd~-avqil~~lyhn----~p~qrTlivthsnqaln~lfeKi~~~d 807 (1320)
T KOG1806|consen 734 KNQVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDV-AVQILSVLYHN----SPNQRTLIVTHSNQALNQLFEKIMALD 807 (1320)
T ss_pred cchhccCHHHHHHHHhcCCCCceeeecCCCCCCcch-hhhhhhhhhhc----CCCcceEEEEecccchhHHHHHHHhcc
Confidence 345578999999998877778999999999999986 34555555544 567889999999988888888776653
No 460
>PRK09087 hypothetical protein; Validated
Probab=84.69 E-value=1.6 Score=45.16 Aligned_cols=40 Identities=8% Similarity=0.105 Sum_probs=23.4
Q ss_pred eEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeec-cCh
Q 004567 215 QILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT-QTK 256 (744)
Q Consensus 215 ~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT-~~~ 256 (744)
.+|+||++|.+. .-...+..++..+......++++++ .|.
T Consensus 89 ~~l~iDDi~~~~--~~~~~lf~l~n~~~~~g~~ilits~~~p~ 129 (226)
T PRK09087 89 GPVLIEDIDAGG--FDETGLFHLINSVRQAGTSLLMTSRLWPS 129 (226)
T ss_pred CeEEEECCCCCC--CCHHHHHHHHHHHHhCCCeEEEECCCChH
Confidence 379999999763 2245566666655543334555554 443
No 461
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.47 E-value=4.3 Score=38.94 Aligned_cols=44 Identities=20% Similarity=0.351 Sum_probs=31.2
Q ss_pred CceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeeccCh
Q 004567 213 QLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTK 256 (744)
Q Consensus 213 ~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~~~ 256 (744)
.-.++++||.-.-+|......+..++..+....++++++..-..
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 141 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE 141 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 45789999999988887777777777766443345666555433
No 462
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=84.43 E-value=0.89 Score=54.24 Aligned_cols=49 Identities=22% Similarity=0.173 Sum_probs=39.0
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHh
Q 004567 104 RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAV 161 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~ 161 (744)
.++++.||||||||..+++|-|-.. +..+||+=|--|+...+....++.
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~---------~~S~VV~D~KGEl~~~Ta~~R~~~ 193 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTW---------PGSAIVHDIKGENWQLTAGFRARF 193 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhC---------CCCEEEEeCcchHHHHHHHHHHhC
Confidence 6799999999999999999987542 235889999999987666655544
No 463
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=84.42 E-value=6 Score=38.87 Aligned_cols=41 Identities=22% Similarity=0.320 Sum_probs=30.1
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeec
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 253 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT 253 (744)
.+-+++++||.-.-+|......+..++..+... .+++++..
T Consensus 115 ~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~-~tii~~sh 155 (178)
T cd03247 115 QDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD-KTLIWITH 155 (178)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC-CEEEEEec
Confidence 566889999999999988788888877776443 45555444
No 464
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=84.41 E-value=1 Score=44.30 Aligned_cols=28 Identities=21% Similarity=0.580 Sum_probs=18.6
Q ss_pred CCceEEEEcCchhhh--ccchHHHHHHHHH
Q 004567 212 SQLQILILDEADRIL--DVGFKKALNAIVS 239 (744)
Q Consensus 212 ~~l~~lVlDEAh~ll--d~gf~~~l~~Il~ 239 (744)
..-+++||||+=.|- ..+|...+..++.
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~ 123 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLD 123 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHC
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHc
Confidence 456799999998664 4568888888887
No 465
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=84.37 E-value=2.1 Score=50.97 Aligned_cols=55 Identities=24% Similarity=0.257 Sum_probs=38.8
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChH--HHHHHHHHHHHhhcc
Q 004567 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRE--LADQLFDVLKAVGKH 164 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~Ptre--La~Qi~~~l~~~~~~ 164 (744)
..++++.|+||+|||..+. .++....+ .|..++|+=|-.. |...++..++..|..
T Consensus 176 ~~H~lv~G~TGsGKT~l~~-~l~~q~i~------~g~~viv~DpKgD~~l~~~~~~~~~~~G~~ 232 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAE-LLITQDIR------RGDVVIVIDPKGDADLKRRMRAEAKRAGRP 232 (634)
T ss_pred CCcEEEECCCCCCHHHHHH-HHHHHHHH------cCCeEEEEeCCCchHHHHHHHHHHHHhCCC
Confidence 4789999999999998754 44444433 2456788888754 777777777776643
No 466
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=84.31 E-value=1.3 Score=44.55 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=23.5
Q ss_pred EEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHH
Q 004567 106 ILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTREL 150 (744)
Q Consensus 106 vlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreL 150 (744)
++++||||||||.. +..++..+.. ..+..++.+.-..++
T Consensus 4 ilI~GptGSGKTTl-l~~ll~~~~~-----~~~~~i~t~e~~~E~ 42 (198)
T cd01131 4 VLVTGPTGSGKSTT-LAAMIDYINK-----NKTHHILTIEDPIEF 42 (198)
T ss_pred EEEECCCCCCHHHH-HHHHHHHhhh-----cCCcEEEEEcCCccc
Confidence 78999999999986 3334444321 123455665555443
No 467
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=84.24 E-value=1.2 Score=52.41 Aligned_cols=44 Identities=30% Similarity=0.409 Sum_probs=28.9
Q ss_pred HHHCCCCCCcHHHHHHHHHHHcC--CCEEEEccCCCchhHHhHHHHHHHH
Q 004567 81 LKDAGFVKMTDIQRASLPHSLCG--RDILGAAKTGSGKTLAFVIPVLEKL 128 (744)
Q Consensus 81 L~~~gf~~~t~iQ~~aip~il~g--~dvlv~a~TGSGKTla~llpil~~L 128 (744)
|...|| .+.|...+..++.. .-++++||||||||.+ +..++..+
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~ 340 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNIL 340 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhh
Confidence 455564 45566666655543 3478999999999986 34555554
No 468
>PRK06904 replicative DNA helicase; Validated
Probab=84.19 E-value=9.7 Score=43.84 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=55.1
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcC-ccChHH
Q 004567 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGG-RRDVDM 181 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg-~~~~~~ 181 (744)
|.=+++.|.||.|||. |.+-+...+... .|..++|++.- .-..|+...+-.... ++....+..| .-+...
T Consensus 221 G~LiiIaarPg~GKTa-falnia~~~a~~-----~g~~Vl~fSlE-Ms~~ql~~Rlla~~s--~v~~~~i~~g~~l~~~e 291 (472)
T PRK06904 221 SDLIIVAARPSMGKTT-FAMNLCENAAMA-----SEKPVLVFSLE-MPAEQIMMRMLASLS--RVDQTKIRTGQNLDQQD 291 (472)
T ss_pred CcEEEEEeCCCCChHH-HHHHHHHHHHHh-----cCCeEEEEecc-CCHHHHHHHHHHhhC--CCCHHHhccCCCCCHHH
Confidence 3447889999999998 444444443221 35567777643 334444444332211 2222112111 111111
Q ss_pred H------HHhc-CCCcEEEE-----ChHHHHHHHhcCCCCCCCCceEEEEcCchhhhc
Q 004567 182 E------KEHV-NELNILVC-----TPGRLLQHMDETPNFDCSQLQILILDEADRILD 227 (744)
Q Consensus 182 e------~~~~-~~~~IlV~-----TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld 227 (744)
. ...+ ..+++.|- |+..+...+.... .....+++||||=.+.|..
T Consensus 292 ~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~-~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 292 WAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVY-RENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHH-HhCCCCCEEEEecHHhcCC
Confidence 1 1122 23456663 4555544333210 0112578999998887653
No 469
>PRK05748 replicative DNA helicase; Provisional
Probab=84.18 E-value=6.4 Score=44.97 Aligned_cols=113 Identities=19% Similarity=0.164 Sum_probs=54.3
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHH-HhhccCCceEEEEEcCccChHH
Q 004567 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLK-AVGKHHNFSAGLLIGGRRDVDM 181 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~-~~~~~~~~~~~~l~Gg~~~~~~ 181 (744)
|.=+++.|+||+|||.- .+-++..+... .|..+++++.- .-..|+...+- ..+ ++....+..+.-....
T Consensus 203 G~livIaarpg~GKT~~-al~ia~~~a~~-----~g~~v~~fSlE-ms~~~l~~R~l~~~~---~v~~~~i~~~~l~~~e 272 (448)
T PRK05748 203 NDLIIVAARPSVGKTAF-ALNIAQNVATK-----TDKNVAIFSLE-MGAESLVMRMLCAEG---NIDAQRLRTGQLTDDD 272 (448)
T ss_pred CceEEEEeCCCCCchHH-HHHHHHHHHHh-----CCCeEEEEeCC-CCHHHHHHHHHHHhc---CCCHHHhhcCCCCHHH
Confidence 34488999999999984 44444443221 35567776532 33344444442 222 1221111111111111
Q ss_pred H------HHhcCCCcEEEE-----ChHHHHHHHhcCCCCCCCCceEEEEcCchhhh
Q 004567 182 E------KEHVNELNILVC-----TPGRLLQHMDETPNFDCSQLQILILDEADRIL 226 (744)
Q Consensus 182 e------~~~~~~~~IlV~-----TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~ll 226 (744)
. ...+.+.++.|. |+..+...+..... ...++++||||=.+.|-
T Consensus 273 ~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~-~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 273 WPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQ-EHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCEEEEccchhcC
Confidence 1 112234556653 34444443332110 01257899999999774
No 470
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=84.18 E-value=2.1 Score=45.36 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=19.5
Q ss_pred ChHHHHHHHhcCCCCCCCCceEEEEcCchhhhc
Q 004567 195 TPGRLLQHMDETPNFDCSQLQILILDEADRILD 227 (744)
Q Consensus 195 TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld 227 (744)
-||-|...+.+ +..=+++.|||.|++.-
T Consensus 90 K~gDlaaiLt~-----Le~~DVLFIDEIHrl~~ 117 (332)
T COG2255 90 KPGDLAAILTN-----LEEGDVLFIDEIHRLSP 117 (332)
T ss_pred ChhhHHHHHhc-----CCcCCeEEEehhhhcCh
Confidence 46667666543 24557899999999754
No 471
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=84.13 E-value=2.3 Score=46.36 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchhHH
Q 004567 104 RDILGAAKTGSGKTLA 119 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla 119 (744)
.++++.||+|+|||..
T Consensus 52 ~~~ll~GppG~GKT~l 67 (328)
T PRK00080 52 DHVLLYGPPGLGKTTL 67 (328)
T ss_pred CcEEEECCCCccHHHH
Confidence 5799999999999985
No 472
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=84.05 E-value=9.5 Score=40.72 Aligned_cols=152 Identities=19% Similarity=0.313 Sum_probs=81.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCC-----CEEEEccCCCchhHHhHHHHHHHHHhccCCCCCC
Q 004567 64 GSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGR-----DILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDG 138 (744)
Q Consensus 64 ~~~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il~g~-----dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g 138 (744)
+...|++.-=-+....+|++.=+... -+|.+..|+ -+|+.+|.|+||+. |.-+..- + .+
T Consensus 128 PNVkWsDVAGLE~AKeALKEAVILPI------KFPqlFtGkR~PwrgiLLyGPPGTGKSY--LAKAVAT---E-----An 191 (439)
T KOG0739|consen 128 PNVKWSDVAGLEGAKEALKEAVILPI------KFPQLFTGKRKPWRGILLYGPPGTGKSY--LAKAVAT---E-----AN 191 (439)
T ss_pred CCCchhhhccchhHHHHHHhheeecc------cchhhhcCCCCcceeEEEeCCCCCcHHH--HHHHHHh---h-----cC
Confidence 34456666434455666655432111 136777774 48999999999995 3333221 1 12
Q ss_pred ceEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHHHHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCceEEE
Q 004567 139 VGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILI 218 (744)
Q Consensus 139 ~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~e~~~~~~~~IlV~TPgrLl~~l~~~~~~~~~~l~~lV 218 (744)
...+-+.+..|+..|...-.++.+ .|+.+.++ +.-++|+
T Consensus 192 -STFFSvSSSDLvSKWmGESEkLVk----------------------------------nLFemARe------~kPSIIF 230 (439)
T KOG0739|consen 192 -STFFSVSSSDLVSKWMGESEKLVK----------------------------------NLFEMARE------NKPSIIF 230 (439)
T ss_pred -CceEEeehHHHHHHHhccHHHHHH----------------------------------HHHHHHHh------cCCcEEE
Confidence 356667777777655443333321 12222222 3456799
Q ss_pred EcCchhhhccc---hHHHHHHH----HHhC----CCCCcEEEEeeccChhHHHH-HHHhcCCCccc
Q 004567 219 LDEADRILDVG---FKKALNAI----VSQL----PKHRQTFLFSATQTKSVQDL-ARLSLKDPQYL 272 (744)
Q Consensus 219 lDEAh~lld~g---f~~~l~~I----l~~l----p~~~q~ll~SAT~~~~v~~l-a~~~l~~p~~i 272 (744)
|||+|.+.... -.....+| +-++ ..+--++.+.||-.+.+.+- ++.-+....||
T Consensus 231 iDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYI 296 (439)
T KOG0739|consen 231 IDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYI 296 (439)
T ss_pred eehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceec
Confidence 99999776542 12222222 2222 12345888999977766553 33334444444
No 473
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=84.00 E-value=2.6 Score=42.60 Aligned_cols=55 Identities=18% Similarity=0.392 Sum_probs=31.7
Q ss_pred ChHHHHHHHhcCCCCCCCCceEEEEcCchhhh-c----cchHHHHHHHHHhCCCC-CcEEEEeecc
Q 004567 195 TPGRLLQHMDETPNFDCSQLQILILDEADRIL-D----VGFKKALNAIVSQLPKH-RQTFLFSATQ 254 (744)
Q Consensus 195 TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~ll-d----~gf~~~l~~Il~~lp~~-~q~ll~SAT~ 254 (744)
+...+++.+..... . -+|||||+|.+. . ..+...+..++..+... ...+.++++.
T Consensus 105 ~l~~~~~~l~~~~~----~-~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 105 ALERLLEKLKKKGK----K-VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp -HHHHHHHHHHCHC----C-EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHhcCC----c-EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 44556666654411 1 589999999998 1 34666777777664333 3345566664
No 474
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=83.84 E-value=3.5 Score=47.84 Aligned_cols=64 Identities=17% Similarity=0.338 Sum_probs=36.6
Q ss_pred EEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhcc-------chHHHHHHHHHhC---CCCCcEEEEeeccChhH
Q 004567 193 VCTPGRLLQHMDETPNFDCSQLQILILDEADRILDV-------GFKKALNAIVSQL---PKHRQTFLFSATQTKSV 258 (744)
Q Consensus 193 V~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~-------gf~~~l~~Il~~l---p~~~q~ll~SAT~~~~v 258 (744)
||--++-.+.+..... .+.-.+|+|||.|.|... .-...++.++..+ ...+++.++-||--+++
T Consensus 586 VGESErAVR~vFqRAR--~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDi 659 (802)
T KOG0733|consen 586 VGESERAVRQVFQRAR--ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDI 659 (802)
T ss_pred hhhHHHHHHHHHHHhh--cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcc
Confidence 4444444444433222 244567999999977531 2345566665554 34567888999955443
No 475
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=83.83 E-value=2 Score=43.78 Aligned_cols=45 Identities=22% Similarity=0.115 Sum_probs=26.2
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCCh
Q 004567 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTR 148 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~Ptr 148 (744)
|.=+.+.|++|+|||...+.-+...+....+. ..+.+++++..-.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~-g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELG-GLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccC-CCcceEEEEecCC
Confidence 45578999999999986444433333211111 1125677777654
No 476
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=83.70 E-value=0.95 Score=53.62 Aligned_cols=50 Identities=24% Similarity=0.363 Sum_probs=38.7
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhh
Q 004567 104 RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~ 162 (744)
.++++.||||||||..+++|.+-. | +..++|+=|.-|+...+...-++.+
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~-----~----~gS~VV~DpKgE~~~~Ta~~R~~~G 261 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALK-----Y----GGPLVCLDPSTEVAPMVCEHRRQAG 261 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhc-----C----CCCEEEEEChHHHHHHHHHHHHHcC
Confidence 589999999999999999997532 1 3358999999999876665554443
No 477
>CHL00176 ftsH cell division protein; Validated
Probab=83.67 E-value=7.9 Score=46.24 Aligned_cols=41 Identities=20% Similarity=0.365 Sum_probs=25.8
Q ss_pred eEEEEcCchhhhcc----------chHHHHHHHHHhC---CCCCcEEEEeeccC
Q 004567 215 QILILDEADRILDV----------GFKKALNAIVSQL---PKHRQTFLFSATQT 255 (744)
Q Consensus 215 ~~lVlDEAh~lld~----------gf~~~l~~Il~~l---p~~~q~ll~SAT~~ 255 (744)
.+|+|||+|.+... .....+..++..+ .....++++.||-.
T Consensus 277 ~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~ 330 (638)
T CHL00176 277 CIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNR 330 (638)
T ss_pred cEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCc
Confidence 58999999988521 1334566666554 23456777777743
No 478
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=83.61 E-value=3.1 Score=46.59 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=31.9
Q ss_pred CceEEEEcCchhhhcc-chHHHHHHHHHhCCCC-CcEEEEeeccChhHH
Q 004567 213 QLQILILDEADRILDV-GFKKALNAIVSQLPKH-RQTFLFSATQTKSVQ 259 (744)
Q Consensus 213 ~l~~lVlDEAh~lld~-gf~~~l~~Il~~lp~~-~q~ll~SAT~~~~v~ 259 (744)
++++++||.++.+... .....+-.+++.+... .|+++.|-..|..+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 6789999999987764 3455555666555443 477777777776654
No 479
>PRK04328 hypothetical protein; Provisional
Probab=83.50 E-value=1.9 Score=45.17 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=34.1
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhh
Q 004567 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVG 162 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~ 162 (744)
|.-+++.|++|+|||.-.+-.+.+.+ ..|..+++++ +.+-..++.+.+..++
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~-------~~ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGL-------QMGEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-------hcCCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 46688999999999875444444433 2356677777 5555556666666654
No 480
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=83.46 E-value=3.7 Score=42.84 Aligned_cols=87 Identities=9% Similarity=0.142 Sum_probs=63.3
Q ss_pred CcEEEeeCCCCHHHHHHHHHHHhc--c---CCeEEEccccccccccCCCCcEEEEcCCCCCHhHHHHHhhccC-cCCCCC
Q 004567 338 IPLMCLYGRMKQDRRMAIYAQFCE--K---RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTA-RYNSGG 411 (744)
Q Consensus 338 ~~v~~lhg~~~~~~R~~i~~~F~~--~---~~VLVaTdv~arGlDi~p~V~~VI~~d~P~s~~~yiQRiGRag-R~g~~G 411 (744)
+.+..+.|+.+... -.|.+ . ..|+|.=+.++||+.| ++.........+...+++.||.=--| |.|-.+
T Consensus 111 ~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTl-eGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 111 IEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTL-EGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred ceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeE-CCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 66666665544322 22333 2 6789999999999999 99998889999999999999954444 666678
Q ss_pred eEEEEeCcchHHHHHHHHH
Q 004567 412 RSVLFLTPTEMKMLEKLRE 430 (744)
Q Consensus 412 ~~il~l~~~e~~~l~~l~~ 430 (744)
.|-+++++.-...+..+.+
T Consensus 185 l~Ri~~~~~l~~~f~~i~~ 203 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIAE 203 (239)
T ss_pred ceEEecCHHHHHHHHHHHH
Confidence 8999988766655555533
No 481
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=83.42 E-value=0.88 Score=54.23 Aligned_cols=46 Identities=30% Similarity=0.310 Sum_probs=36.5
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHH
Q 004567 104 RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVL 158 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l 158 (744)
.++++.||||||||..+++|.+-.. +..+||+=|--|+..-+....
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~---------~~S~VV~D~KGE~~~~Tag~R 221 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSW---------GHSSVITDLKGELWALTAGWR 221 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhC---------CCCEEEEeCcHHHHHHHHHHH
Confidence 5799999999999999999987431 345899999999976554443
No 482
>PRK08840 replicative DNA helicase; Provisional
Probab=83.25 E-value=9.8 Score=43.69 Aligned_cols=49 Identities=24% Similarity=0.209 Sum_probs=28.5
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHH
Q 004567 103 GRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVL 158 (744)
Q Consensus 103 g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l 158 (744)
|.=+++.|.||.|||.- .+-+...+... .|..++|++.- .-..|+...+
T Consensus 217 g~LiviaarPg~GKTaf-alnia~~~a~~-----~~~~v~~fSlE-Ms~~ql~~Rl 265 (464)
T PRK08840 217 SDLIIVAARPSMGKTTF-AMNLCENAAMD-----QDKPVLIFSLE-MPAEQLMMRM 265 (464)
T ss_pred CceEEEEeCCCCchHHH-HHHHHHHHHHh-----CCCeEEEEecc-CCHHHHHHHH
Confidence 44478899999999984 44444443221 35667777643 2234444433
No 483
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=83.10 E-value=1.5 Score=46.79 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=27.9
Q ss_pred EEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHH
Q 004567 106 ILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELA 151 (744)
Q Consensus 106 vlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa 151 (744)
.+|.|||||||+-- +..|+..+.-....-.+++|+|+...+
T Consensus 90 ~~VYGPTG~GKSqL-----lRNLis~~lI~P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 90 GVVYGPTGSGKSQL-----LRNLISCQLIQPPPETVFFITPQKDMI 130 (369)
T ss_pred EEEECCCCCCHHHH-----HHHhhhcCcccCCCCceEEECCCCCCC
Confidence 56789999999973 455544333223445699999987654
No 484
>PRK06321 replicative DNA helicase; Provisional
Probab=82.99 E-value=9 Score=44.09 Aligned_cols=125 Identities=18% Similarity=0.190 Sum_probs=60.8
Q ss_pred CcHHHHHHHHHHHcC---CC-EEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhcc
Q 004567 89 MTDIQRASLPHSLCG---RD-ILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKH 164 (744)
Q Consensus 89 ~t~iQ~~aip~il~g---~d-vlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~ 164 (744)
||.+. .+..++.| .+ +++.|.+|.|||. |.+-+...+... .|..+++++.- .-..|+...+-.. .
T Consensus 210 ~tG~~--~LD~~t~Gl~~G~LiiiaarPgmGKTa-fal~ia~~~a~~-----~g~~v~~fSLE-Ms~~ql~~Rlla~--~ 278 (472)
T PRK06321 210 PTHFI--DLDKMINGFSPSNLMILAARPAMGKTA-LALNIAENFCFQ-----NRLPVGIFSLE-MTVDQLIHRIICS--R 278 (472)
T ss_pred ccCcH--HHHHHhcCCCCCcEEEEEeCCCCChHH-HHHHHHHHHHHh-----cCCeEEEEecc-CCHHHHHHHHHHh--h
Confidence 44442 44445444 33 6789999999997 444455444321 25556666532 2233444433221 1
Q ss_pred CCceEEEEEcCccChHHHH------HhcCCCcEEEE-----ChHHHHHHHhcCCCCCCCCceEEEEcCchhhh
Q 004567 165 HNFSAGLLIGGRRDVDMEK------EHVNELNILVC-----TPGRLLQHMDETPNFDCSQLQILILDEADRIL 226 (744)
Q Consensus 165 ~~~~~~~l~Gg~~~~~~e~------~~~~~~~IlV~-----TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~ll 226 (744)
.++....+..+.-+..... ..+....+.|. |...+...+.... .-..+++||||=.+.|.
T Consensus 279 s~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~--~~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 279 SEVESKKISVGDLSGRDFQRIVSVVNEMQEHTLLIDDQPGLKITDLRARARRMK--ESYDIQFLIIDYLQLLS 349 (472)
T ss_pred cCCCHHHhhcCCCCHHHHHHHHHHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchHHcC
Confidence 1222222211111111111 22344567665 4444544443321 11457899999998775
No 485
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=82.91 E-value=1.2 Score=50.36 Aligned_cols=49 Identities=22% Similarity=0.350 Sum_probs=34.8
Q ss_pred HHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHH
Q 004567 97 LPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELAD 152 (744)
Q Consensus 97 ip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~ 152 (744)
+|.-...+++++.|+||||||.+ +..++..+.. .+..+||+=|..++..
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~------~~~~~vi~D~kg~~~~ 84 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ-IRELLASIRA------RGDRAIIYDPNGGFVS 84 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH-HHHHHHHHHh------cCCCEEEEeCCcchhH
Confidence 44445568999999999999985 4444544433 2456899999988764
No 486
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=82.91 E-value=22 Score=41.13 Aligned_cols=187 Identities=16% Similarity=0.245 Sum_probs=106.8
Q ss_pred CCcEEEEecchHHHHHHHHHHHhhCCC--CcEEEeeCCCCHHHHHHHHHHHhccCCeEEEcc-----ccccc-cccCCCC
Q 004567 311 NSKILVFLTSCKQVKYVFEAFKKLRPG--IPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASRG-LDFNKAV 382 (744)
Q Consensus 311 ~~k~IVF~~s~~~v~~l~~~L~~l~~g--~~v~~lhg~~~~~~R~~i~~~F~~~~~VLVaTd-----v~arG-lDi~p~V 382 (744)
...+||.++|++-+..++..+...... +...|++|+.+...+..- ..+...|+|||. .+..| +++ ..|
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~---l~~gvdiviaTPGRl~d~le~g~~~l-~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRD---LERGVDVVIATPGRLIDLLEEGSLNL-SRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHH---HhcCCcEEEeCChHHHHHHHcCCccc-cce
Confidence 456999999999999999988886544 448999999886554433 233678999995 45666 677 778
Q ss_pred cEEEE--------cCCCCCHhHHHHHhhccCcCCCCCeEEEEeCcchHH-HHHHHHHcCCCcccccccc-cccccHHHHH
Q 004567 383 DWVVQ--------VDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK-MLEKLREAKIPIHFTKANT-KRLQPVSGLL 452 (744)
Q Consensus 383 ~~VI~--------~d~P~s~~~yiQRiGRagR~g~~G~~il~l~~~e~~-~l~~l~~~~i~i~~~~~~~-~~~~~i~~~l 452 (744)
.++|. .++-..+...++.++|..| .-..+....|.+.. +...+....+.+.-...+. ....++
T Consensus 241 ~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r---Qtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i---- 313 (519)
T KOG0331|consen 241 TYLVLDEADRMLDMGFEPQIRKILSQIPRPDR---QTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNI---- 313 (519)
T ss_pred eEEEeccHHhhhccccHHHHHHHHHhcCCCcc---cEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcch----
Confidence 88884 4445567788888888877 33444445565553 2222222222222221111 111111
Q ss_pred HHHHhcChhHHHHHHHHHHHHHHHhcc-CCCc-ccccccCCCHHHHHHhcCCCCCCCccc
Q 004567 453 AALLVKYPDMQHRAQKAFITYLRSVHI-QKDK-EVFDVTKLSIDEFSASLGLPMTPKIRF 510 (744)
Q Consensus 453 ~~~~~~~~~l~~~a~~af~sy~rs~~~-~~~~-~if~~~~l~~~~~a~s~gl~~~p~~~~ 510 (744)
..++..-++.. + ..-....++.++. ...+ -||.-.+...++++.-+.-..-|.+-+
T Consensus 314 ~qive~~~~~~-K-~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~i 371 (519)
T KOG0331|consen 314 RQIVEVCDETA-K-LRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAI 371 (519)
T ss_pred hhhhhhcCHHH-H-HHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeee
Confidence 11221111111 1 1123445555542 2223 368877888888888765544344333
No 487
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=82.86 E-value=2.6 Score=50.63 Aligned_cols=71 Identities=21% Similarity=0.155 Sum_probs=53.8
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhc
Q 004567 88 KMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGK 163 (744)
Q Consensus 88 ~~t~iQ~~aip~il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~ 163 (744)
.+++-|++++... ...++|.|..|||||.+..--+...+...... ...+++|+=|+-.|.++.+.+..+..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~---p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVD---PEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcC---hHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5889999998665 45689999999999998655555554433332 23489999999999988888887764
No 488
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=82.82 E-value=1.2 Score=49.90 Aligned_cols=46 Identities=33% Similarity=0.444 Sum_probs=32.7
Q ss_pred HHcCCCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHH
Q 004567 100 SLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELAD 152 (744)
Q Consensus 100 il~g~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~ 152 (744)
-...+++++.|.||||||. ++-+++..+... |.++||.=|.-+...
T Consensus 12 ~~e~~~~li~G~~GsGKT~-~i~~ll~~~~~~------g~~~iI~D~kg~~~~ 57 (386)
T PF10412_consen 12 DSENRHILIIGATGSGKTQ-AIRHLLDQIRAR------GDRAIIYDPKGEFTE 57 (386)
T ss_dssp GGGGG-EEEEE-TTSSHHH-HHHHHHHHHHHT------T-EEEEEEETTHHHH
T ss_pred chhhCcEEEECCCCCCHHH-HHHHHHHHHHHc------CCEEEEEECCchHHH
Confidence 3456899999999999997 456777666443 667888889877755
No 489
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=82.81 E-value=1 Score=53.52 Aligned_cols=49 Identities=27% Similarity=0.382 Sum_probs=37.5
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHh
Q 004567 104 RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAV 161 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~ 161 (744)
.++++.||||||||..+++|.+-. | +..++|+=|..|+...+....++.
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~-----~----~gS~VV~DpKgEl~~~Ta~~R~~~ 273 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALK-----W----GGPLVVLDPSTEVAPMVSEHRRDA 273 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhc-----C----CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 579999999999999999997632 1 234788889999987666655443
No 490
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=82.75 E-value=9.6 Score=46.69 Aligned_cols=30 Identities=30% Similarity=0.553 Sum_probs=21.8
Q ss_pred ChHHHHHHHhcCCCCCCCCceEEEEcCchhhhcc
Q 004567 195 TPGRLLQHMDETPNFDCSQLQILILDEADRILDV 228 (744)
Q Consensus 195 TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~ 228 (744)
.||++.+.+...... . .+|+|||+|++...
T Consensus 402 ~~G~~~~~l~~~~~~--~--~villDEidk~~~~ 431 (784)
T PRK10787 402 MPGKLIQKMAKVGVK--N--PLFLLDEIDKMSSD 431 (784)
T ss_pred CCcHHHHHHHhcCCC--C--CEEEEEChhhcccc
Confidence 688988888765322 2 37999999998754
No 491
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=82.72 E-value=2.2 Score=50.45 Aligned_cols=48 Identities=21% Similarity=0.346 Sum_probs=32.5
Q ss_pred cEEEEChHHHHHHHhcCCCCCCCCceEEEEcCchhhhccchHHHHHHHHHhC
Q 004567 190 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 241 (744)
Q Consensus 190 ~IlV~TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~lld~gf~~~l~~Il~~l 241 (744)
..|=+-||++++-|......+ -+++|||+|.|.....++--.++++-|
T Consensus 398 TYIGamPGrIiQ~mkka~~~N----Pv~LLDEIDKm~ss~rGDPaSALLEVL 445 (782)
T COG0466 398 TYIGAMPGKIIQGMKKAGVKN----PVFLLDEIDKMGSSFRGDPASALLEVL 445 (782)
T ss_pred cccccCChHHHHHHHHhCCcC----CeEEeechhhccCCCCCChHHHHHhhc
Confidence 445567999999998774432 369999999988654444444444444
No 492
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=82.68 E-value=0.69 Score=45.54 Aligned_cols=46 Identities=24% Similarity=0.377 Sum_probs=29.3
Q ss_pred HHHhcCCCcEEEEChHHHHHHHhcCCC--CCCCCceEEEEcCchhhhcc
Q 004567 182 EKEHVNELNILVCTPGRLLQHMDETPN--FDCSQLQILILDEADRILDV 228 (744)
Q Consensus 182 e~~~~~~~~IlV~TPgrLl~~l~~~~~--~~~~~l~~lVlDEAh~lld~ 228 (744)
........+|||+++.-|++-...... +. ..-.+|||||||.|.+.
T Consensus 113 ~r~~~~~adivi~~y~yl~~~~~~~~~~~~~-~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 113 ARELAKNADIVICNYNYLFDPSIRKSLFGID-LKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp HHHCGGG-SEEEEETHHHHSHHHHHHHCT---CCCEEEEETTGGGCGGG
T ss_pred HHHhcccCCEEEeCHHHHhhHHHHhhhcccc-ccCcEEEEecccchHHH
Confidence 344556789999999887764332211 22 23468999999988764
No 493
>PHA00012 I assembly protein
Probab=82.30 E-value=5.5 Score=43.19 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=18.9
Q ss_pred EEEEccCCCchhHHhHHHHHHHH
Q 004567 106 ILGAAKTGSGKTLAFVIPVLEKL 128 (744)
Q Consensus 106 vlv~a~TGSGKTla~llpil~~L 128 (744)
-++.|..|||||+..+.-++..+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L 26 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKL 26 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 47899999999998777666665
No 494
>PRK08760 replicative DNA helicase; Provisional
Probab=82.28 E-value=6.7 Score=45.19 Aligned_cols=113 Identities=21% Similarity=0.181 Sum_probs=54.8
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCChHHHHHHHHHHHHhhccCCceEEEEEcCccChHH--
Q 004567 104 RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDM-- 181 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~PtreLa~Qi~~~l~~~~~~~~~~~~~l~Gg~~~~~~-- 181 (744)
.=+++.|.+|.|||.. .+-+...+... .|..++|++.-- -..|+...+........... +..|.-....+
T Consensus 230 ~LivIaarPg~GKTaf-al~iA~~~a~~-----~g~~V~~fSlEM-s~~ql~~Rl~a~~s~i~~~~-i~~g~l~~~e~~~ 301 (476)
T PRK08760 230 DLIILAARPAMGKTTF-ALNIAEYAAIK-----SKKGVAVFSMEM-SASQLAMRLISSNGRINAQR-LRTGALEDEDWAR 301 (476)
T ss_pred ceEEEEeCCCCChhHH-HHHHHHHHHHh-----cCCceEEEeccC-CHHHHHHHHHHhhCCCcHHH-HhcCCCCHHHHHH
Confidence 3478899999999984 44444443221 245577775432 23455554443322211111 11121111111
Q ss_pred ---HHHhcCCCcEEEE-----ChHHHHHHHhcCCCCCCCCceEEEEcCchhhh
Q 004567 182 ---EKEHVNELNILVC-----TPGRLLQHMDETPNFDCSQLQILILDEADRIL 226 (744)
Q Consensus 182 ---e~~~~~~~~IlV~-----TPgrLl~~l~~~~~~~~~~l~~lVlDEAh~ll 226 (744)
-...+...++.|. |+..+...+.... .-..+++||||=.+.|.
T Consensus 302 ~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~--~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 302 VTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLK--REHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHH--HhcCCCEEEEecHHhcC
Confidence 1122334566554 3444544333221 11357899999988764
No 495
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.11 E-value=4.7 Score=39.45 Aligned_cols=43 Identities=28% Similarity=0.390 Sum_probs=32.0
Q ss_pred CCceEEEEcCchhhhccchHHHHHHHHHhCCCCCcEEEEeecc
Q 004567 212 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQ 254 (744)
Q Consensus 212 ~~l~~lVlDEAh~lld~gf~~~l~~Il~~lp~~~q~ll~SAT~ 254 (744)
.+-+++++||--.-+|......+..++..+.....+++++..-
T Consensus 112 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~ 154 (173)
T cd03230 112 HDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHI 154 (173)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 4668899999999999988888888887775443455555443
No 496
>CHL00095 clpC Clp protease ATP binding subunit
Probab=82.00 E-value=5.6 Score=49.08 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=15.2
Q ss_pred CCEEEEccCCCchhHHh
Q 004567 104 RDILGAAKTGSGKTLAF 120 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~ 120 (744)
.++|+.||+|+|||...
T Consensus 201 ~n~lL~G~pGvGKTal~ 217 (821)
T CHL00095 201 NNPILIGEPGVGKTAIA 217 (821)
T ss_pred CCeEEECCCCCCHHHHH
Confidence 57999999999999864
No 497
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=81.89 E-value=10 Score=37.79 Aligned_cols=74 Identities=19% Similarity=0.326 Sum_probs=52.4
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhhC--CCCcEEEeeCCCCHHHHHHHHHHHhccCCeEEEccc-----cccc-cccCCC
Q 004567 310 LNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV-----ASRG-LDFNKA 381 (744)
Q Consensus 310 ~~~k~IVF~~s~~~v~~l~~~L~~l~--~g~~v~~lhg~~~~~~R~~i~~~F~~~~~VLVaTdv-----~arG-lDi~p~ 381 (744)
...++||.+++...+..+...+.... .++.+..++|+.+...+...+ .....|+|+|.- +..+ .++ +.
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiv~T~~~l~~~l~~~~~~~-~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL---KRGPHIVVATPGRLLDLLERGKLDL-SK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh---cCCCCEEEEChHHHHHHHHcCCCCh-hh
Confidence 35689999999999998888776653 367788999998876554333 246789999942 2223 566 66
Q ss_pred CcEEEE
Q 004567 382 VDWVVQ 387 (744)
Q Consensus 382 V~~VI~ 387 (744)
++++|.
T Consensus 144 l~~lIv 149 (203)
T cd00268 144 VKYLVL 149 (203)
T ss_pred CCEEEE
Confidence 777664
No 498
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=81.79 E-value=12 Score=39.87 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=18.0
Q ss_pred HHHHHHc-C--CCEEEEccCCCchhHH
Q 004567 96 SLPHSLC-G--RDILGAAKTGSGKTLA 119 (744)
Q Consensus 96 aip~il~-g--~dvlv~a~TGSGKTla 119 (744)
.++.+.. + +++++.|+||||||..
T Consensus 101 ~l~~l~~~~~~~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 101 LLPYLVRNNRVLNTLIISPPQCGKTTL 127 (270)
T ss_pred HHHHHHhCCCeeEEEEEcCCCCCHHHH
Confidence 3445543 3 5789999999999984
No 499
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=81.74 E-value=14 Score=44.01 Aligned_cols=45 Identities=20% Similarity=0.206 Sum_probs=26.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHH---cCCCEEEEccCCCchhHH
Q 004567 64 GSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSL---CGRDILGAAKTGSGKTLA 119 (744)
Q Consensus 64 ~~~~F~~l~ls~~~~~~L~~~gf~~~t~iQ~~aip~il---~g~dvlv~a~TGSGKTla 119 (744)
....|+++-.++..+..|... .-+..+ .++-+++.||+|+|||.+
T Consensus 79 rP~~ldel~~~~~ki~~l~~~-----------l~~~~~~~~~~~illL~GP~GsGKTTl 126 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETW-----------LKAQVLENAPKRILLITGPSGCGKSTT 126 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHH-----------HHhcccccCCCcEEEEECCCCCCHHHH
Confidence 345677776676665554321 101111 123388999999999986
No 500
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=81.62 E-value=1.6 Score=45.91 Aligned_cols=38 Identities=21% Similarity=0.169 Sum_probs=25.5
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhccCCCCCCceEEEEcCC
Q 004567 104 RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPT 147 (744)
Q Consensus 104 ~dvlv~a~TGSGKTla~llpil~~L~~~~~~~~~g~~aLIl~Pt 147 (744)
.=+++.|.||.|||.. ++-+...+... .+..+++++.-
T Consensus 20 ~L~vi~a~pg~GKT~~-~l~ia~~~a~~-----~~~~vly~SlE 57 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAF-ALQIALNAALN-----GGYPVLYFSLE 57 (259)
T ss_dssp -EEEEEESTTSSHHHH-HHHHHHHHHHT-----TSSEEEEEESS
T ss_pred cEEEEEecccCCchHH-HHHHHHHHHHh-----cCCeEEEEcCC
Confidence 3478999999999985 44444444332 25778888863
Done!