Query 004567
Match_columns 744
No_of_seqs 482 out of 3479
Neff 7.6
Searched_HMMs 29240
Date Tue Mar 26 18:28:53 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004567.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1868-1871//hhsearch_pdb/004567hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sqw_A ATP-dependent RNA helic 1.0 1 1 471.4 36.0 433 72-512 27-489 (579)
2 2db3_A ATP-dependent RNA helic 1.0 1 1 470.5 44.9 353 62-421 52-408 (434)
3 3i5x_A ATP-dependent RNA helic 1.0 1 1 468.8 35.8 438 67-512 69-540 (563)
4 3fmp_B ATP-dependent RNA helic 1.0 1 1 442.6 21.3 371 56-438 82-466 (479)
5 2j0s_A ATP-dependent RNA helic 1.0 1 1 442.3 41.2 368 64-442 35-406 (410)
6 2i4i_A ATP-dependent RNA helic 1.0 1 1 439.3 42.2 362 63-430 12-393 (417)
7 3eiq_A Eukaryotic initiation f 1.0 1 1 431.8 37.8 368 63-441 37-409 (414)
8 1s2m_A Putative ATP-dependent 1.0 1 1 426.5 44.2 367 64-441 19-387 (400)
9 1fuu_A Yeast initiation factor 1.0 1 1 424.3 21.0 366 64-440 19-387 (394)
10 3fht_A ATP-dependent RNA helic 1.0 1 1 420.9 43.7 369 60-440 19-401 (412)
No 1
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=1.00 E-value=1 Score=471.45 Aligned_cols=433 Identities=27% Similarity=0.468 Sum_probs=346.5
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHH--CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHH
Q ss_conf 999989999997999999399999999997--699799984688842378279999999741389999916999928957
Q 004567 72 PISKKTKSGLKDAGFVKMTDIQRASLPHSL--CGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRE 149 (744)
Q Consensus 72 ~ls~~~~~~L~~~g~~~lt~iQ~~ai~~~l--~gkdvli~a~TGSGKTla~llpil~~l~~~~~~~~~g~~vLii~Ptre 149 (744)
.|++.++++|..+||..|+++|.++|+.++ .|+|+++.+|||||||++|++|+++.+...++....+.++|||+||++
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~ 106 (579)
T 3sqw_A 27 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 106 (579)
T ss_dssp SSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHH
T ss_conf 99999999999779999999999999999805998399983798679999999999999841335668976999825199
Q ss_pred HHHHHHHHHHHHHCC----CCCEEEEEECCCCCHHHHHHHC--CCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEECCCH
Q ss_conf 799999999996112----7750789976854747789750--9994999876889998852999888882089975720
Q 004567 150 LADQLFDVLKAVGKH----HNFSAGLLIGGRRDVDMEKEHV--NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEAD 223 (744)
Q Consensus 150 La~Qi~~~l~~~~~~----~~~~~~~~~Gg~~~~~~e~~~~--~~~~IiV~TPgrLl~~l~~~~~~~~~~l~~iViDEAh 223 (744)
|+.|++..+..++.. ..+.+..++| +.........+ .+++|+|+||++|++++.......+..+.+|||||||
T Consensus 107 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g-g~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah 185 (579)
T 3sqw_A 107 LALQIEAEVKKIHDMNYGLKKYACVSLVG-GTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEAD 185 (579)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECT-TSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEEC-CCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCCCCEEEEECHH
T ss_conf 99999999999985434666637999989-90679999998459999999898999999984554341338899998837
Q ss_pred HHHCCCHHHHHHHHHHHCCC-------CCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCC--CCCCCCCCCEEEEECC
Q ss_conf 22201049999999996898-------88189983026725999999843899401014543--3567555413699828
Q 004567 224 RILDVGFKKALNAIVSQLPK-------HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEES--VTATPNRLQQTAMIVP 294 (744)
Q Consensus 224 ~ll~~gf~~~l~~I~~~lp~-------~~q~il~SAT~~~~v~~l~~~~l~~p~~i~v~~~~--~~~~~~~l~q~~~~~~ 294 (744)
++++++|...+..|+..++. .+|+++||||+++.+..++..++..+..+.+.... .......+.+.+..+.
T Consensus 186 ~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 265 (579)
T 3sqw_A 186 RLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISE 265 (579)
T ss_dssp HHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEES
T ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEEEC
T ss_conf 76447879999999987455311465674599993568868999999976998259996057666554034315999944
Q ss_pred H-HHHH----HHHHHHHHH-HCCCCEEEEECCHHHHHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHHHHHHHC-CCCEE
Q ss_conf 1-4379----999999998-0799399993363899999999995099-9967986078999999999999952-68849
Q 004567 295 L-EQKL----DMLWSFIKA-HLNSKILVFLTSCKQVKYVFEAFKKLRP-GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVL 366 (744)
Q Consensus 295 ~-~~kl----~~L~~ll~~-~~~~k~IVF~~s~~~v~~l~~~L~~~~~-g~~v~~lhg~~~~~~R~~i~~~F~~-~~~vL 366 (744)
. .... ..+...+.. ....++||||+++..++.++..|....+ ++.+..+||+|++.+|..+++.|+. ...||
T Consensus 266 ~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vL 345 (579)
T 3sqw_A 266 KFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGIL 345 (579)
T ss_dssp STTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEE
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf 22655999999999998613789838998892899999999998752479727984188999999999998635887199
Q ss_pred EECCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHC-CCCCCCCCCCCCCC
Q ss_conf 97042224665578975899838999976999986104757999759999382309999999983-99841024563453
Q 004567 367 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTKANTKRL 445 (744)
Q Consensus 367 vaTdv~~rGlDi~p~v~~VI~~d~P~s~~~yiQriGRagR~g~~G~~il~l~~~e~~~l~~l~~~-~i~i~~~~~~~~~~ 445 (744)
|||+++++|||+ |+|++||++++|.++..|+||+||+||.|+.|.|++|+++.+..++..+++. ++++....... ..
T Consensus 346 VaT~~~~~GiDi-p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~~~~-~~ 423 (579)
T 3sqw_A 346 VCTDVGARGMDF-PNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYE-PS 423 (579)
T ss_dssp EECGGGTSSCCC-TTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEEEEC-CC
T ss_pred EECCHHHCCCCC-CCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCC-CC
T ss_conf 981445458873-5687899818999877765322644558997329999724189999999998589755356788-43
Q ss_pred CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-HHHHHHHCCC-CCCC--CCCCCC
Q ss_conf 32899999999209369999999999999875017785423446899-8899975299-9888--744433
Q 004567 446 QPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLS-IDEFSASLGL-PMTP--KIRFLN 512 (744)
Q Consensus 446 ~~i~~~l~~~~~~~~~l~~~a~~af~sy~rs~~~~~~~~if~~~~l~-~~~~a~s~gl-~~~p--~~~~~~ 512 (744)
..+...+...+..+.+....+.+++++|++++. ..+.+...+ +..+|..||+ ...| ++++.+
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 489 (579)
T 3sqw_A 424 EEIKSEVLEAVTEEPEDISDIVISLISSYRSCI-----KEYRFSERRILPEIASTYGVLLNDPQLKIPVSR 489 (579)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-----HHHTCCHHHHHHHHHHHHHHHTTCTTCCEEECH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 899999999998659999999999999999999-----874777245899999999998389988874206
No 2
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=470.46 Aligned_cols=353 Identities=29% Similarity=0.469 Sum_probs=315.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCC-CCCCCCE
Q ss_conf 867888777999998999999799999939999999999769979998468884237827999999974138-9999916
Q 004567 62 YVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERW-GPEDGVG 140 (744)
Q Consensus 62 ~~~~~~F~~l~ls~~~~~~L~~~g~~~lt~iQ~~ai~~~l~gkdvli~a~TGSGKTla~llpil~~l~~~~~-~~~~g~~ 140 (744)
+....+|+++++++.++++|..+||..||++|.++||.+++|+|++++++||||||++|++|++..+..... ....+..
T Consensus 52 p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~ 131 (434)
T 2db3_A 52 PQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQ 131 (434)
T ss_dssp CCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCS
T ss_pred CCCCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 97768852369999999999976999999899999999966998899878999823999999999998445321358964
Q ss_pred EEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEEC
Q ss_conf 99992895779999999999611277507899768547477897509994999876889998852999888882089975
Q 004567 141 SIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILD 220 (744)
Q Consensus 141 vLii~PtreLa~Qi~~~l~~~~~~~~~~~~~~~Gg~~~~~~e~~~~~~~~IiV~TPgrLl~~l~~~~~~~~~~l~~iViD 220 (744)
+||++||++|+.|+++.+++++...++.+++++|+............+++|+|+|||+|++++... .+.+.++++||+|
T Consensus 132 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~-~~~l~~~~~lVlD 210 (434)
T 2db3_A 132 VVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT-FITFEDTRFVVLD 210 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT-SCCCTTCCEEEEE
T ss_pred EEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHC-CCCCCCCCEEEEC
T ss_conf 899934899999999999997334786799997888878999985069989998748999999728-8563327768875
Q ss_pred CCHHHHCCCHHHHHHHHHHHC--CCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHH
Q ss_conf 720222010499999999968--988818998302672599999984389940101454335675554136998281437
Q 004567 221 EADRILDVGFKKALNAIVSQL--PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK 298 (744)
Q Consensus 221 EAh~ll~~gf~~~l~~I~~~l--p~~~q~il~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~k 298 (744)
|||++++++|...+..|+..+ +..+|+++||||++..+..++..++.++..+.+.... .....+.+.+..+....+
T Consensus 211 Eah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~--~~~~~i~~~~~~~~~~~k 288 (434)
T 2db3_A 211 EADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG--GACSDVKQTIYEVNKYAK 288 (434)
T ss_dssp THHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTT--CCCTTEEEEEEECCGGGH
T ss_pred CHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCC--CCCCCCCEEEEEECCHHH
T ss_conf 176663067199999999725789885699995568989999999864698899953566--666653369999371777
Q ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHC-CCCEEEECCCCCCCCC
Q ss_conf 999999999807993999933638999999999950999967986078999999999999952-6884997042224665
Q 004567 299 LDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLD 377 (744)
Q Consensus 299 l~~L~~ll~~~~~~k~IVF~~s~~~v~~l~~~L~~~~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~vLvaTdv~~rGlD 377 (744)
...|..++.... .++||||+++..++.++..|... ++.+..+||++++.+|..+++.|++ ...|||||+++++|+|
T Consensus 289 ~~~l~~~l~~~~-~~~lVF~~t~~~a~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlD 365 (434)
T 2db3_A 289 RSKLIEILSEQA-DGTIVFVETKRGADFLASFLSEK--EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLD 365 (434)
T ss_dssp HHHHHHHHHHCC-TTEEEECSSHHHHHHHHHHHHHT--TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCC
T ss_pred HHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECHHHHCCCC
T ss_conf 999999998579-98799994718999999999867--998799849999999999999998599939998206457788
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCH
Q ss_conf 57897589983899997699998610475799975999938230
Q 004567 378 FNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 421 (744)
Q Consensus 378 i~p~v~~VI~~d~P~s~~~yiQriGRagR~g~~G~~il~l~~~e 421 (744)
+ |+|++||+||+|.+...|+||+||+||.|+.|.+++|+++.+
T Consensus 366 i-~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~ 408 (434)
T 2db3_A 366 I-KNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEK 408 (434)
T ss_dssp C-TTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTT
T ss_pred C-CCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEEECCC
T ss_conf 3-248989997899998899998160655899877999980642
No 3
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=1.00 E-value=1 Score=468.75 Aligned_cols=438 Identities=28% Similarity=0.466 Sum_probs=348.3
Q ss_pred CCCCCC----CCHHHHHHHHHCCCCCCCHHHHHHHHHHH--CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 877799----99989999997999999399999999997--699799984688842378279999999741389999916
Q 004567 67 RFDQLP----ISKKTKSGLKDAGFVKMTDIQRASLPHSL--CGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVG 140 (744)
Q Consensus 67 ~F~~l~----ls~~~~~~L~~~g~~~lt~iQ~~ai~~~l--~gkdvli~a~TGSGKTla~llpil~~l~~~~~~~~~g~~ 140 (744)
+|.++. +++.++++|..+||..|+++|.++|+.++ .++|+++++|||||||++|++|+++.+...+.....+.+
T Consensus 69 ~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~ 148 (563)
T 3i5x_A 69 TLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVK 148 (563)
T ss_dssp CHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCC
T ss_pred CHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 87887551788999999999779999999999999999667997299987899974299999999998742346667704
Q ss_pred EEEECCCHHHHHHHHHHHHHHHCC----CCCEEEEEECCCCCHHHHHHH--CCCCCEEEECHHHHHHHHHCCCCCCCCCC
Q ss_conf 999928957799999999996112----775078997685474778975--09994999876889998852999888882
Q 004567 141 SIIISPTRELADQLFDVLKAVGKH----HNFSAGLLIGGRRDVDMEKEH--VNELNILVCTPGRLLQHMDETPNFDCSQL 214 (744)
Q Consensus 141 vLii~PtreLa~Qi~~~l~~~~~~----~~~~~~~~~Gg~~~~~~e~~~--~~~~~IiV~TPgrLl~~l~~~~~~~~~~l 214 (744)
+|||+||++|+.|+++.++.+... ..+.+..++| +......... ..+++|+|+||++|++++.......+..+
T Consensus 149 ~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~ 227 (563)
T 3i5x_A 149 AVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVG-GTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFV 227 (563)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECT-TSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC-CCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCCCCC
T ss_conf 99982849999999999999974235667604999989-90779999997468999899892999999983441112551
Q ss_pred EEEEECCCHHHHCCCHHHHHHHHHHHCC-------CCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCC--CCCCCCC
Q ss_conf 0899757202220104999999999689-------888189983026725999999843899401014543--3567555
Q 004567 215 QILILDEADRILDVGFKKALNAIVSQLP-------KHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEES--VTATPNR 285 (744)
Q Consensus 215 ~~iViDEAh~ll~~gf~~~l~~I~~~lp-------~~~q~il~SAT~~~~v~~l~~~~l~~p~~i~v~~~~--~~~~~~~ 285 (744)
.+|||||||++++++|...+..|+..++ ..+|+++||||+++.+..++...+.++..+.+.... .......
T Consensus 228 ~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (563)
T 3i5x_A 228 DYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHER 307 (563)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTT
T ss_pred EEEEEECHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC
T ss_conf 09998377877505509999999986111035676675599998168878999999863887617874157777552103
Q ss_pred CCEEEEECCH-HHHH----HHHHHHHHH-HCCCCEEEEECCHHHHHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHHHHH
Q ss_conf 4136998281-4379----999999998-0799399993363899999999995099-9967986078999999999999
Q 004567 286 LQQTAMIVPL-EQKL----DMLWSFIKA-HLNSKILVFLTSCKQVKYVFEAFKKLRP-GIPLMCLYGRMKQDRRMAIYAQ 358 (744)
Q Consensus 286 l~q~~~~~~~-~~kl----~~L~~ll~~-~~~~k~IVF~~s~~~v~~l~~~L~~~~~-g~~v~~lhg~~~~~~R~~i~~~ 358 (744)
+.+.+..... ..+. ..+...+.. ....++||||+++..++.++..|....+ ++.+..+||++++.+|..+++.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~ 387 (563)
T 3i5x_A 308 IDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKR 387 (563)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 75489987226766999999999998613788728999481799999999998742479608982588999999999999
Q ss_pred HHC-CCCEEEECCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHC-CCCCC
Q ss_conf 952-6884997042224665578975899838999976999986104757999759999382309999999983-99841
Q 004567 359 FCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIH 436 (744)
Q Consensus 359 F~~-~~~vLvaTdv~~rGlDi~p~v~~VI~~d~P~s~~~yiQriGRagR~g~~G~~il~l~~~e~~~l~~l~~~-~i~i~ 436 (744)
|++ ...|||||+++++|||+ |+|++||++++|.++..|+||+||+||.|+.|.+++|+.+.+..+++.+.+. ++++.
T Consensus 388 f~~g~~~vLvaT~~~~~GiDi-p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~ 466 (563)
T 3i5x_A 388 FKKDESGILVCTDVGARGMDF-PNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIA 466 (563)
T ss_dssp HHHCSSEEEEECGGGTSSCCC-TTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCC
T ss_pred HHCCCCCEEEECCHHHCCCCC-CCCCEEEEECCCCCHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCC
T ss_conf 866899889983666468984-2677799979999642464642723569998539999750488999999997488866
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CHHHHHHHCC-CCCCC--CCCCCC
Q ss_conf 0245634533289999999920936999999999999987501778542344689-9889997529-99888--744433
Q 004567 437 FTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKL-SIDEFSASLG-LPMTP--KIRFLN 512 (744)
Q Consensus 437 ~~~~~~~~~~~i~~~l~~~~~~~~~l~~~a~~af~sy~rs~~~~~~~~if~~~~l-~~~~~a~s~g-l~~~p--~~~~~~ 512 (744)
....... ...+...+...+.++++....+.++|++|++++.. .|..... .+.++|.+|| |...| ++++.+
T Consensus 467 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 540 (563)
T 3i5x_A 467 KQEKYEP-SEEIKSEVLEAVTEEPEDISDIVISLISSYRSCIK-----EYRFSERRILPEIASTYGVLLNDPQLKIPVSR 540 (563)
T ss_dssp EEEEECC-CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHTHH-----HHTCCHHHHHHHHHTHHHHHTTCTTCCEEECH
T ss_pred CCCCCCC-CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH-----HHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 3445685-47899999999864899999999999999999988-----73898477999999999998389977886367
No 4
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=1.00 E-value=1 Score=442.63 Aligned_cols=371 Identities=27% Similarity=0.446 Sum_probs=314.0
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCC--CCEEEECCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 788767867888777999998999999799999939999999999769--979998468884237827999999974138
Q 004567 56 EDSFSKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCG--RDILGAAKTGSGKTLAFVIPVLEKLYKERW 133 (744)
Q Consensus 56 ~~~~~~~~~~~~F~~l~ls~~~~~~L~~~g~~~lt~iQ~~ai~~~l~g--kdvli~a~TGSGKTla~llpil~~l~~~~~ 133 (744)
.++..|.....+|.+++|++.++++|..+||..|+++|..+++.++.+ ++++++++||||||++|++|++..+...
T Consensus 82 ~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-- 159 (479)
T 3fmp_B 82 RDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-- 159 (479)
T ss_dssp SSTTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT--
T ss_pred CCCCCCCCCCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC--
T ss_conf 799987667599777699999999999759999998999999999748998589985799835199999999987634--
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCCHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCCCC
Q ss_conf 99999169999289577999999999961127-75078997685474778975099949998768899988529998888
Q 004567 134 GPEDGVGSIIISPTRELADQLFDVLKAVGKHH-NFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCS 212 (744)
Q Consensus 134 ~~~~g~~vLii~PtreLa~Qi~~~l~~~~~~~-~~~~~~~~Gg~~~~~~e~~~~~~~~IiV~TPgrLl~~l~~~~~~~~~ 212 (744)
..+.++|||+|+++|+.|++..++.++... ++.+...+++.. ... ......+|+|+||++|++++.....+.+.
T Consensus 160 --~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~ 234 (479)
T 3fmp_B 160 --NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK-LER--GQKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (479)
T ss_dssp --SCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCC-CCT--TCCCCCSEEEECHHHHHHHHTTSCCCCGG
T ss_pred --CCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC-CCC--CCCCCCCEEEECCHHHHHHHHHCCCCCCC
T ss_conf --7887479993839999999999999972288745999968864-021--11478998997863899999726996723
Q ss_pred CCEEEEECCCHHHHC-CCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 820899757202220-1049999999996898881899830267259999998438994010145433567555413699
Q 004567 213 QLQILILDEADRILD-VGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAM 291 (744)
Q Consensus 213 ~l~~iViDEAh~ll~-~gf~~~l~~I~~~lp~~~q~il~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~~l~q~~~ 291 (744)
++.+|||||||++++ .+|...+..+...++..+|+++||||++..+..++...+.+|..+.+.... .....+.+.+.
T Consensus 235 ~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~ 312 (479)
T 3fmp_B 235 KIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREE--ETLDTIKQYYV 312 (479)
T ss_dssp GCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----------------
T ss_pred CCCEEEEECHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCC--CCCCCCEEEEE
T ss_conf 3989999777888441896789999996388546499994878879999999976998699626645--67677669999
Q ss_pred ECCH-HHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHC-CCCEEEEC
Q ss_conf 8281-437999999999807993999933638999999999950999967986078999999999999952-68849970
Q 004567 292 IVPL-EQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT 369 (744)
Q Consensus 292 ~~~~-~~kl~~L~~ll~~~~~~k~IVF~~s~~~v~~l~~~L~~~~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~vLvaT 369 (744)
.++. ..+...+..++......++||||+++..++.++..|... ++.+..+||++++..|..+++.|++ ...|||||
T Consensus 313 ~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~--~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T 390 (479)
T 3fmp_B 313 LCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE--GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT 390 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 94777889999999985256786699968688999999999758--9518996088999999999999976999599984
Q ss_pred CCCCCCCCCCCCCCEEEECCCCC------CHHHHHHHHHCCCCCCCCCEEEEEECCCH-HHHHHHHHHC-CCCCCCC
Q ss_conf 42224665578975899838999------97699998610475799975999938230-9999999983-9984102
Q 004567 370 DVASRGLDFNKAVDWVVQVDCPE------DVASYIHRVGRTARYNSGGRSVLFLTPTE-MKMLEKLREA-KIPIHFT 438 (744)
Q Consensus 370 dv~~rGlDi~p~v~~VI~~d~P~------s~~~yiQriGRagR~g~~G~~il~l~~~e-~~~l~~l~~~-~i~i~~~ 438 (744)
+++++|+|| |++++||+||+|. +...|+||+||+||.|+.|.+++|+++.+ ..++..+.+. +..+..+
T Consensus 391 ~~~~~GlDi-p~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l 466 (479)
T 3fmp_B 391 NVCARGIDV-EQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERL 466 (479)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CCCCCCCCC-CCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEC
T ss_conf 421167762-2399899966999876677899999872433569998439999747305999999999858892478
No 5
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=1.00 E-value=1 Score=442.30 Aligned_cols=368 Identities=27% Similarity=0.464 Sum_probs=323.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 78887779999989999997999999399999999997699799984688842378279999999741389999916999
Q 004567 64 GSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSII 143 (744)
Q Consensus 64 ~~~~F~~l~ls~~~~~~L~~~g~~~lt~iQ~~ai~~~l~gkdvli~a~TGSGKTla~llpil~~l~~~~~~~~~g~~vLi 143 (744)
...+|+++++++.+.++|...||..|+++|.++++.++.|++++++++||||||++|++|+++.+... ..+.++||
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~----~~~~~~li 110 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ----VRETQALI 110 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT----SCSCCEEE
T ss_pred CCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHC----CCCCEEEE
T ss_conf 77997666999999999997699999889999989984799779988899983399999999998625----67833899
Q ss_pred ECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHH-HHHCCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf 928957799999999996112775078997685474778-9750999499987688999885299988888208997572
Q 004567 144 ISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDME-KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEA 222 (744)
Q Consensus 144 i~PtreLa~Qi~~~l~~~~~~~~~~~~~~~Gg~~~~~~e-~~~~~~~~IiV~TPgrLl~~l~~~~~~~~~~l~~iViDEA 222 (744)
++|+++|+.|+++.+..++...++.+..++| +...... .....+++|+|+||++|++++... .+.+..+++||+|||
T Consensus 111 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~-~~~~~~~~~vViDEa 188 (410)
T 2j0s_A 111 LAPTRELAVQIQKGLLALGDYMNVQCHACIG-GTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR-SLRTRAIKMLVLDEA 188 (410)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTTTCCEEEECT-TSCHHHHHHHHHHCCSEEEECHHHHHHHHHTT-SSCCTTCCEEEEETH
T ss_pred ECCCHHHHHHHHHHHHHHHCCCCEEEEEEEC-CCCHHHHHHHHHCCCCEEECCHHHHHHHHHHC-CCCHHHEEEEEECCH
T ss_conf 7384899999999999984547737999989-97879999985169988985989999999838-935756059997568
Q ss_pred HHHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHH-HHHH
Q ss_conf 022201049999999996898881899830267259999998438994010145433567555413699828143-7999
Q 004567 223 DRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ-KLDM 301 (744)
Q Consensus 223 h~ll~~gf~~~l~~I~~~lp~~~q~il~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~-kl~~ 301 (744)
|++.+++|...+..++..++...|++++|||++..+..+...++.+|..+.+.... .....+.+.+..+.... +...
T Consensus 189 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~k~~~ 266 (410)
T 2j0s_A 189 DEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDE--LTLEGIKQFFVAVEREEWKFDT 266 (410)
T ss_dssp HHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGG--CSCTTEEEEEEEESSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCC--CCCCCCEEEEEEECCHHHHHHH
T ss_conf 89876345999999998486476699997579999999999875898899956865--5678855999993827769999
Q ss_pred HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHC-CCCEEEECCCCCCCCCCCC
Q ss_conf 999999807993999933638999999999950999967986078999999999999952-6884997042224665578
Q 004567 302 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNK 380 (744)
Q Consensus 302 L~~ll~~~~~~k~IVF~~s~~~v~~l~~~L~~~~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~vLvaTdv~~rGlDi~p 380 (744)
+..++......++||||+++..++.+++.|... ++.+..+||++++.+|..+++.|++ ...|||||+++++|+|+ |
T Consensus 267 l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi-~ 343 (410)
T 2j0s_A 267 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA--NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDV-P 343 (410)
T ss_dssp HHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCC-T
T ss_pred HHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCC-C
T ss_conf 999997357784799985787899999999867--9946982278998899999999877999899989765474884-4
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHC-CCCCCCCCCCC
Q ss_conf 975899838999976999986104757999759999382309999999983-99841024563
Q 004567 381 AVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTKANT 442 (744)
Q Consensus 381 ~v~~VI~~d~P~s~~~yiQriGRagR~g~~G~~il~l~~~e~~~l~~l~~~-~i~i~~~~~~~ 442 (744)
++++||++++|++...|+||+||+||.|+.|.+++|+++.+...+..+.+. +..++.+..+.
T Consensus 344 ~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (410)
T 2j0s_A 344 QVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNV 406 (410)
T ss_dssp TEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSCC
T ss_pred CCCEEEEECCCCCHHHHHHHCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCEECCCCH
T ss_conf 599899979999989999864645679996599998657899999999998679960136522
No 6
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=1.00 E-value=1 Score=439.34 Aligned_cols=362 Identities=30% Similarity=0.468 Sum_probs=316.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCC--------
Q ss_conf 678887779999989999997999999399999999997699799984688842378279999999741389--------
Q 004567 63 VGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWG-------- 134 (744)
Q Consensus 63 ~~~~~F~~l~ls~~~~~~L~~~g~~~lt~iQ~~ai~~~l~gkdvli~a~TGSGKTla~llpil~~l~~~~~~-------- 134 (744)
....+|+++++++.+.++|..+||..|+++|.++|+.++.|+|+++.+|||||||++|++|++..+......
T Consensus 12 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (417)
T 2i4i_A 12 PHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 91 (417)
T ss_dssp CCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred CCCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCC
T ss_conf 64489744899999999999779999988999999987269988999079877989999999999974464100000111
Q ss_pred ------CCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHCCCCCEEEECHHHHHHHHHCCCC
Q ss_conf ------99991699992895779999999999611277507899768547477897509994999876889998852999
Q 004567 135 ------PEDGVGSIIISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPN 208 (744)
Q Consensus 135 ------~~~g~~vLii~PtreLa~Qi~~~l~~~~~~~~~~~~~~~Gg~~~~~~e~~~~~~~~IiV~TPgrLl~~l~~~~~ 208 (744)
...+.++||++||++|+.|+++.++.++...++.++.++|+............+++|+|+||++|.+++... .
T Consensus 92 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~-~ 170 (417)
T 2i4i_A 92 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERG-K 170 (417)
T ss_dssp CBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT-S
T ss_pred CCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCC-C
T ss_conf 233444457964899889299999999999998275880499998899879999986079999998969999999749-9
Q ss_pred CCCCCCEEEEECCCHHHHCCCHHHHHHHHHHH--CCC--CCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 88888208997572022201049999999996--898--88189983026725999999843899401014543356755
Q 004567 209 FDCSQLQILILDEADRILDVGFKKALNAIVSQ--LPK--HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPN 284 (744)
Q Consensus 209 ~~~~~l~~iViDEAh~ll~~gf~~~l~~I~~~--lp~--~~q~il~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~ 284 (744)
+.+.++++||+||||++.+++|...+..++.. ++. .+|+++||||++..+..+...++.++..+.+... .....
T Consensus 171 ~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 248 (417)
T 2i4i_A 171 IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRV--GSTSE 248 (417)
T ss_dssp BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC------CCS
T ss_pred CCHHHCCEEEEECHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCC
T ss_conf 3763595999978367536586999999997354897677489999985799999999997589789980787--77755
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHC-C
Q ss_conf 5413699828143799999999980-7993999933638999999999950999967986078999999999999952-6
Q 004567 285 RLQQTAMIVPLEQKLDMLWSFIKAH-LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K 362 (744)
Q Consensus 285 ~l~q~~~~~~~~~kl~~L~~ll~~~-~~~k~IVF~~s~~~v~~l~~~L~~~~~g~~v~~lhg~~~~~~R~~i~~~F~~-~ 362 (744)
.+.+.+..+....+...+..++... ...++||||+++..++.++..|... ++.+..+||++++.+|..+++.|++ .
T Consensus 249 ~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~ 326 (417)
T 2i4i_A 249 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGDRSQRDREEALHQFRSGK 326 (417)
T ss_dssp SEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHHTS
T ss_pred CCEEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 742789992607689999999985589971999979889999999999977--997467108999899999999997699
Q ss_pred CCEEEECCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHH
Q ss_conf 88499704222466557897589983899997699998610475799975999938230999999998
Q 004567 363 RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLRE 430 (744)
Q Consensus 363 ~~vLvaTdv~~rGlDi~p~v~~VI~~d~P~s~~~yiQriGRagR~g~~G~~il~l~~~e~~~l~~l~~ 430 (744)
..|||||+++++|+|+ |++++||++++|.+...|+||+||+||.|+.|.+++|+++.+...+..+.+
T Consensus 327 ~~vlvaT~~~~~Gidi-p~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 393 (417)
T 2i4i_A 327 SPILVATAVAARGLDI-SNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLD 393 (417)
T ss_dssp SCEEEECHHHHTTSCC-CCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHH
T ss_pred CCEEEECCHHHCCCCC-CCCCEEEEECCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHH
T ss_conf 9799989744347873-468989997699998999986284314899725999876243899999999
No 7
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=431.81 Aligned_cols=368 Identities=27% Similarity=0.462 Sum_probs=322.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf 67888777999998999999799999939999999999769979998468884237827999999974138999991699
Q 004567 63 VGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSI 142 (744)
Q Consensus 63 ~~~~~F~~l~ls~~~~~~L~~~g~~~lt~iQ~~ai~~~l~gkdvli~a~TGSGKTla~llpil~~l~~~~~~~~~g~~vL 142 (744)
....+|+++++++.+.+.|...||..|+++|.++++.++.|+++++.++||||||++|++|+++.+... ..+.++|
T Consensus 37 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~----~~~~~~l 112 (414)
T 3eiq_A 37 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD----LKATQAL 112 (414)
T ss_dssp CCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT----SCSCCEE
T ss_pred CHHCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHC----CCCEEEE
T ss_conf 011477447999999999997699999989999867985799789987899850599999999998605----7861699
Q ss_pred EECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHC--CCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEEC
Q ss_conf 99289577999999999961127750789976854747789750--9994999876889998852999888882089975
Q 004567 143 IISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHV--NELNILVCTPGRLLQHMDETPNFDCSQLQILILD 220 (744)
Q Consensus 143 ii~PtreLa~Qi~~~l~~~~~~~~~~~~~~~Gg~~~~~~e~~~~--~~~~IiV~TPgrLl~~l~~~~~~~~~~l~~iViD 220 (744)
|++|+++|+.|+++.++.++...+..+...+| +.......... ..++|+|+||++|++++... .+.+.++++||+|
T Consensus 113 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~~~~vViD 190 (414)
T 3eiq_A 113 VLAPTRELAQQIQKVVMALGDYMGASCHACIG-GTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR-YLSPKYIKMFVLD 190 (414)
T ss_dssp EECSSHHHHHHHHHHHHHHGGGSCCCEEECCC-CTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHT-SSCSTTCCEEEEC
T ss_pred EEECHHHHHHHHHHHHHHHHCCCCCEEEEEEC-CCCHHHHHHHHHCCCCCEEEECHHHHHHHHHCC-CCCCCCCCEEEEE
T ss_conf 99375999999999999984515833999978-965578999973699999998989999999759-9563038299998
Q ss_pred CCHHHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCHH-HHH
Q ss_conf 7202220104999999999689888189983026725999999843899401014543356755541369982814-379
Q 004567 221 EADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLE-QKL 299 (744)
Q Consensus 221 EAh~ll~~gf~~~l~~I~~~lp~~~q~il~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~-~kl 299 (744)
|||++.+++|...+..++..++..+|+++||||++..+..+...++.++..+.+.... .....+.+.+..+... .++
T Consensus 191 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 268 (414)
T 3eiq_A 191 EADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE--LTLEGIRQFYINVEREEWKL 268 (414)
T ss_dssp SHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCC--CCTTSCCEEEEECSSSTTHH
T ss_pred CHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEECCCC--CCCCCCEEEEEEECHHHHHH
T ss_conf 9888620373999999998388877699999836878999999875897899924776--68898059999967687589
Q ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHC-CCCEEEECCCCCCCCCC
Q ss_conf 99999999807993999933638999999999950999967986078999999999999952-68849970422246655
Q 004567 300 DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDF 378 (744)
Q Consensus 300 ~~L~~ll~~~~~~k~IVF~~s~~~v~~l~~~L~~~~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~vLvaTdv~~rGlDi 378 (744)
..+..++......++||||+++..++.+++.|... ++.+..+||++++.+|..+++.|++ ...|||||+++++|+|+
T Consensus 269 ~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 346 (414)
T 3eiq_A 269 DTLCDLYETLTITQAVIFINTRRKVDWLTEKMHAR--DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDV 346 (414)
T ss_dssp HHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTT--TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCG
T ss_pred HHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHC--CCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC
T ss_conf 99999998479982899968789999999999866--9708973477999999999999975999399988831269785
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHC-CCCCCCCCCC
Q ss_conf 78975899838999976999986104757999759999382309999999983-9984102456
Q 004567 379 NKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTKAN 441 (744)
Q Consensus 379 ~p~v~~VI~~d~P~s~~~yiQriGRagR~g~~G~~il~l~~~e~~~l~~l~~~-~i~i~~~~~~ 441 (744)
|++++||+++.|.+...|+||+||+||.|+.|.+++|+++.+...+..+... +..++.+..+
T Consensus 347 -p~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (414)
T 3eiq_A 347 -QQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLN 409 (414)
T ss_dssp -GGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-
T ss_pred -CCCCEEEEECCCCCHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf -678889996799988882341572568989766999972778999999999975774316954
No 8
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=1.00 E-value=1 Score=426.52 Aligned_cols=367 Identities=32% Similarity=0.496 Sum_probs=323.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 78887779999989999997999999399999999997699799984688842378279999999741389999916999
Q 004567 64 GSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSII 143 (744)
Q Consensus 64 ~~~~F~~l~ls~~~~~~L~~~g~~~lt~iQ~~ai~~~l~gkdvli~a~TGSGKTla~llpil~~l~~~~~~~~~g~~vLi 143 (744)
...+|+++++++.+.++|..+||..|+++|.++++.++.|+++++.+|||||||++|++|++..+... ..+.++||
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~----~~~~~~li 94 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK----LNKIQALI 94 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT----SCSCCEEE
T ss_pred CCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHC----CCCCCEEE
T ss_conf 56882214999999999998799999899999988882699789988999579999999999987404----58964899
Q ss_pred ECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEECCCH
Q ss_conf 92895779999999999611277507899768547477897509994999876889998852999888882089975720
Q 004567 144 ISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEAD 223 (744)
Q Consensus 144 i~PtreLa~Qi~~~l~~~~~~~~~~~~~~~Gg~~~~~~e~~~~~~~~IiV~TPgrLl~~l~~~~~~~~~~l~~iViDEAh 223 (744)
++|+++|+.|+++.++.++...++.+..++|+.............++|+|+||++|++++... ...+.++.+||+||||
T Consensus 95 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~-~~~~~~~~~vIiDEaH 173 (400)
T 1s2m_A 95 MVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRK-VADLSDCSLFIMDEAD 173 (400)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT-CSCCTTCCEEEEESHH
T ss_pred ECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHC-CCCCCCCCEEEEECCH
T ss_conf 869999999999999998530691499996896658899973689989997669999999838-9651657889993835
Q ss_pred HHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH
Q ss_conf 22201049999999996898881899830267259999998438994010145433567555413699828143799999
Q 004567 224 RILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLW 303 (744)
Q Consensus 224 ~ll~~gf~~~l~~I~~~lp~~~q~il~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~kl~~L~ 303 (744)
++.+.+|...+..++..++...+++++|||++..+..+....+..|..+.+... .....+.+.+..+....+...+.
T Consensus 174 ~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~k~~~l~ 250 (400)
T 1s2m_A 174 KMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE---LTLKGITQYYAFVEERQKLHCLN 250 (400)
T ss_dssp HHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS---CBCTTEEEEEEECCGGGHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCC---CCCCCCEEEEEEECHHHHHHHHH
T ss_conf 866206699999999748967369999956887899999997589837883243---44577506899835231899999
Q ss_pred HHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHC-CCCEEEECCCCCCCCCCCCCC
Q ss_conf 9999807993999933638999999999950999967986078999999999999952-688499704222466557897
Q 004567 304 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAV 382 (744)
Q Consensus 304 ~ll~~~~~~k~IVF~~s~~~v~~l~~~L~~~~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~vLvaTdv~~rGlDi~p~v 382 (744)
.++......++||||+++..++.++..|... ++.+..+||++++.+|..+++.|++ ...|||||+++++|+|+ |++
T Consensus 251 ~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi-p~~ 327 (400)
T 1s2m_A 251 TLFSKLQINQAIIFCNSTNRVELLAKKITDL--GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDI-QAV 327 (400)
T ss_dssp HHHHHSCCSEEEEECSSHHHHHHHHHHHHHH--TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCC-TTE
T ss_pred HHHHHCCCCCEEEEEECHHHHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC-CCC
T ss_conf 9986437785799992489999999999866--9976985177998999999999865998099986731147886-678
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHC-CCCCCCCCCC
Q ss_conf 5899838999976999986104757999759999382309999999983-9984102456
Q 004567 383 DWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTKAN 441 (744)
Q Consensus 383 ~~VI~~d~P~s~~~yiQriGRagR~g~~G~~il~l~~~e~~~l~~l~~~-~i~i~~~~~~ 441 (744)
++||++++|+++..|+||+||+||.|+.|.|++|+++.+...+..+.+. +++++.+...
T Consensus 328 ~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 387 (400)
T 1s2m_A 328 NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPAT 387 (400)
T ss_dssp EEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSS
T ss_pred CEEEEECCCCCHHHHHHHCCHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 889995899998897874503037989846999865406999999999858876546554
No 9
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=1.00 E-value=1 Score=424.25 Aligned_cols=366 Identities=26% Similarity=0.449 Sum_probs=315.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 78887779999989999997999999399999999997699799984688842378279999999741389999916999
Q 004567 64 GSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSII 143 (744)
Q Consensus 64 ~~~~F~~l~ls~~~~~~L~~~g~~~lt~iQ~~ai~~~l~gkdvli~a~TGSGKTla~llpil~~l~~~~~~~~~g~~vLi 143 (744)
...+|+++++++.+.+.|...||..|+++|.++++.++.|+++++.+|||+|||++|++|++..+... ..+.++||
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~----~~~~~~li 94 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS----VKAPQALM 94 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT----CCSCCEEE
T ss_pred CCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCC----CCCCCEEE
T ss_conf 33884326999999999997599999889999999983799789988999739999999999986435----78987899
Q ss_pred ECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEECCCH
Q ss_conf 92895779999999999611277507899768547477897509994999876889998852999888882089975720
Q 004567 144 ISPTRELADQLFDVLKAVGKHHNFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEAD 223 (744)
Q Consensus 144 i~PtreLa~Qi~~~l~~~~~~~~~~~~~~~Gg~~~~~~e~~~~~~~~IiV~TPgrLl~~l~~~~~~~~~~l~~iViDEAh 223 (744)
++|+++|+.|+++.+..++...++.+..++| +............++|+|+||++|++.+... .+.+.++++||+||||
T Consensus 95 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~vIiDEah 172 (394)
T 1fuu_A 95 LAPTRELALQIQKVVMALAFHMDIKVHACIG-GTSFVEDAEGLRDAQIVVGTPGRVFDNIQRR-RFRTDKIKMFILDEAD 172 (394)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCCCEEEECS-SCCHHHHHHHHHHCSEEEECHHHHHHHHHTT-SSCCTTCCEEEEETHH
T ss_pred ECCCHHHHHHHHHHHHHHHCCCCEEEEEEEC-CCCHHHHHHHCCCCCEEEECHHHHHHHHHHC-CCCHHHCCEEEEECHH
T ss_conf 8498999999999999985537814999967-8866888964679999997879999999818-8156137599997867
Q ss_pred HHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHH-HHHHH
Q ss_conf 22201049999999996898881899830267259999998438994010145433567555413699828143-79999
Q 004567 224 RILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ-KLDML 302 (744)
Q Consensus 224 ~ll~~gf~~~l~~I~~~lp~~~q~il~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~~~~-kl~~L 302 (744)
++.+++|...+..++..++...+++++|||+++.+..+...++.+|..+.+.... .....+.+.+..+.... +...+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l 250 (394)
T 1fuu_A 173 EMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDE--LTLEGIKQFYVNVEEEEYKYECL 250 (394)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------------
T ss_pred HHHCCCCHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEECCCC--CCCCCCEEEEEECCCHHHHHHHH
T ss_conf 8657795899999998488776499999756889999999863788399956765--46777249999858136579999
Q ss_pred HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHC-CCCEEEECCCCCCCCCCCCC
Q ss_conf 99999807993999933638999999999950999967986078999999999999952-68849970422246655789
Q 004567 303 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKA 381 (744)
Q Consensus 303 ~~ll~~~~~~k~IVF~~s~~~v~~l~~~L~~~~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~vLvaTdv~~rGlDi~p~ 381 (744)
..++......++||||+++..++.++..|... ++.+..+||++++.+|..+++.|++ ...|||||+++++|+|+ |+
T Consensus 251 ~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi-~~ 327 (394)
T 1fuu_A 251 TDLYDSISVTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDV-QQ 327 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHCCCCCCEEEEECCHHHHHHHHHHHHHC--CCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCC-CC
T ss_conf 99995287884799987889999999999976--9718984078998999999999977998599988814328882-02
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHC-CCCCCCCCC
Q ss_conf 75899838999976999986104757999759999382309999999983-998410245
Q 004567 382 VDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTKA 440 (744)
Q Consensus 382 v~~VI~~d~P~s~~~yiQriGRagR~g~~G~~il~l~~~e~~~l~~l~~~-~i~i~~~~~ 440 (744)
+++||++++|+++..|+||+||+||.|+.|.+++|+++.+...+..+.+. +.+++.+..
T Consensus 328 ~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 387 (394)
T 1fuu_A 328 VSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPS 387 (394)
T ss_dssp ------------------------------------------------------------
T ss_pred CCEEEEECCCCCHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 898999679999899888717245798985599997546889999999985776301486
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=1.00 E-value=1 Score=420.92 Aligned_cols=369 Identities=27% Similarity=0.439 Sum_probs=317.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCC--CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 67867888777999998999999799999939999999999769--9799984688842378279999999741389999
Q 004567 60 SKYVGSTRFDQLPISKKTKSGLKDAGFVKMTDIQRASLPHSLCG--RDILGAAKTGSGKTLAFVIPVLEKLYKERWGPED 137 (744)
Q Consensus 60 ~~~~~~~~F~~l~ls~~~~~~L~~~g~~~lt~iQ~~ai~~~l~g--kdvli~a~TGSGKTla~llpil~~l~~~~~~~~~ 137 (744)
.|.....+|+++++++.++++|..+||..|+++|.++++.++.+ +++++.+|||||||++|++|+++.+... ..
T Consensus 19 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~----~~ 94 (412)
T 3fht_A 19 SPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA----NK 94 (412)
T ss_dssp STTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT----SC
T ss_pred CCCCCCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHC----CC
T ss_conf 97556688766798999999999869999998999999999669997089989999559899999999986524----79
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCCHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCCEE
Q ss_conf 9169999289577999999999961127-750789976854747789750999499987688999885299988888208
Q 004567 138 GVGSIIISPTRELADQLFDVLKAVGKHH-NFSAGLLIGGRRDVDMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQI 216 (744)
Q Consensus 138 g~~vLii~PtreLa~Qi~~~l~~~~~~~-~~~~~~~~Gg~~~~~~e~~~~~~~~IiV~TPgrLl~~l~~~~~~~~~~l~~ 216 (744)
+.++||++|+++|+.|+++.++.++... ++.++...++..... .....++|+|+||++|++++.....+.+.++.+
T Consensus 95 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~ 171 (412)
T 3fht_A 95 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER---GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKV 171 (412)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCT---TCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCE
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH---HHCCCCCEEEECCHHHHHHHHHCCCCCHHHCCE
T ss_conf 98889989989999999999999973366633898615741103---334789889998118999997469967634819
Q ss_pred EEECCCHHHHC-CCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECC-
Q ss_conf 99757202220-1049999999996898881899830267259999998438994010145433567555413699828-
Q 004567 217 LILDEADRILD-VGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP- 294 (744)
Q Consensus 217 iViDEAh~ll~-~gf~~~l~~I~~~lp~~~q~il~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~~l~q~~~~~~- 294 (744)
||+||||++.+ .++...+..+...++..+|++++|||++..+..+....+.++..+.+.... .....+.+.+..+.
T Consensus 172 iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 249 (412)
T 3fht_A 172 FVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREE--ETLDTIKQYYVLCSS 249 (412)
T ss_dssp EEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGG--SSCTTEEEEEEECSS
T ss_pred EEEECHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEECCCC--CCCCCCEEEEEECCC
T ss_conf 999687888544895789999985388774599998205889999999866897288605644--455675399998377
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHC-CCCEEEECCCCC
Q ss_conf 1437999999999807993999933638999999999950999967986078999999999999952-688499704222
Q 004567 295 LEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVAS 373 (744)
Q Consensus 295 ~~~kl~~L~~ll~~~~~~k~IVF~~s~~~v~~l~~~L~~~~~g~~v~~lhg~~~~~~R~~i~~~F~~-~~~vLvaTdv~~ 373 (744)
...+...+..++......++||||+++..++.++..|... ++.+..+||++++.+|..+++.|++ ...|||||++++
T Consensus 250 ~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 327 (412)
T 3fht_A 250 RDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE--GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCA 327 (412)
T ss_dssp HHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGT
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHC--CCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 5878999999986168898899959789999999999867--97389963999999999999999779994999858323
Q ss_pred CCCCCCCCCCEEEECCCCC------CHHHHHHHHHCCCCCCCCCEEEEEECCCH-HHHHHHHHHC-CCCCCCCCC
Q ss_conf 4665578975899838999------97699998610475799975999938230-9999999983-998410245
Q 004567 374 RGLDFNKAVDWVVQVDCPE------DVASYIHRVGRTARYNSGGRSVLFLTPTE-MKMLEKLREA-KIPIHFTKA 440 (744)
Q Consensus 374 rGlDi~p~v~~VI~~d~P~------s~~~yiQriGRagR~g~~G~~il~l~~~e-~~~l~~l~~~-~i~i~~~~~ 440 (744)
+|+|+ |++++||++++|+ +...|+||+||+||.|+.|.+++++.+.+ ..++..+.+. +..+..+..
T Consensus 328 ~Gidi-p~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 401 (412)
T 3fht_A 328 RGIDV-EQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 401 (412)
T ss_dssp SSCCC-TTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--
T ss_pred CCCCC-CCCCEEEEECCCCCCCCCCCHHEEECCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 68875-678989997999987777542122414573547989846999975803699999999997786322797
Done!