BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004568
(744 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 131/543 (24%), Positives = 206/543 (37%), Gaps = 121/543 (22%)
Query: 117 GRK--FEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQG 174
GRK +LH G+ TY EV+ RA GL G V R A L A+
Sbjct: 32 GRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA 91
Query: 175 CFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFEN 234
+ T L + + LN + L+ D T+++ + +
Sbjct: 92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDE 151
Query: 235 DGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVM 294
E + E LG+ + DP + + YT+G+TGLPKGV+
Sbjct: 152 KAPE--------------GYLAYEEALGEEA--DPVRVPERAACGMAYTTGTTGLPKGVV 195
Query: 295 ITHGNIVATAAAIKTLIPNPGRS--DVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLT 352
+H +V + A +L+ S DV L +P+ HV A C + Y +TL
Sbjct: 196 YSHRALVLHSLA-ASLVDGTALSEKDVVLPVVPMFHV----------NAWC-LPYAATLV 243
Query: 353 MTDTSSKIKKGTKGDVSVLKP-------TLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLF 405
+ ++ G + D + L T A VP ++ L L
Sbjct: 244 ---GAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVW--------------LALADYLE 286
Query: 406 NIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFI 465
+ G++ K++R R ++ G A + RF
Sbjct: 287 STGHR-------------------------LKTLR-------RLVVGGSAAPRSLIARFE 314
Query: 466 NICMGAPIGQAYGLTETCAG----------STFSEWDDPSV-GRVGPPVPCCYIKLVSWD 514
MG + Q YGLTET + SE + ++ + G P+P +++ D
Sbjct: 315 R--MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVA--D 370
Query: 515 EGGYKTSDKPMPR-----GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQ 569
E G +P+P+ GE+ + G +T GY+ N T D +F TGDI
Sbjct: 371 EEG-----RPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPD----GFFRTGDIAV 421
Query: 570 VYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADP---FHNYCVAL 626
+G +EI DR KD++K GE+IS +E AL+ V + A P + +A+
Sbjct: 422 WDEEGYVEIKDRLKDLIK-SGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAV 480
Query: 627 VVP 629
VVP
Sbjct: 481 VVP 483
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 106/363 (29%), Positives = 158/363 (43%), Gaps = 91/363 (25%)
Query: 273 SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG----RSDVYLAYLPLAH 328
S + V + Y+SG+TGLPKGVM+TH +V T+ A + NP DV L LP+ H
Sbjct: 223 SPDDVVALPYSSGTTGLPKGVMLTHKGLV-TSVAQQVDGENPNLYFHSDDVILCVLPMFH 281
Query: 329 VLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVL-------KPTLMAAVPA 381
+ L SIMLC G +G + L M K ++++L K T+ VP
Sbjct: 282 IYAL--NSIMLC-GLRVG-AAILIM----------PKFEINLLLELIQRCKVTVAPMVPP 327
Query: 382 IFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRA 441
I LA + S + L S+R
Sbjct: 328 IV-----------------------------LAIAKSSETEKYDL----------SSIRV 348
Query: 442 VLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCAGST------FSEWDDP 494
V G APL + + +N A +GQ YG+TE AG F++ P
Sbjct: 349 VKSG--------AAPLGKELEDAVNAKFPNAKLGQGYGMTE--AGPVLAMSLGFAKEPFP 398
Query: 495 -SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553
G G V +K+V D G + ++P GEI + G + GY NNP T+E
Sbjct: 399 VKSGACGTVVRNAEMKIVDPDTGDSLSRNQP---GEICIRGHQIMKGYLNNPAATAET-- 453
Query: 554 VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIM 613
+D+ G W +TGDIG + D L I+DR K+++K + G ++ ++EA LI + ++
Sbjct: 454 IDKDG--WLHTGDIGLIDDDDELFIVDRLKELIKYK-GFQVAPAELEALLIGHPDITDVA 510
Query: 614 IHA 616
+ A
Sbjct: 511 VVA 513
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 84/343 (24%), Positives = 134/343 (39%), Gaps = 62/343 (18%)
Query: 278 AVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESI 337
A+++YTSG+TG PKG +I + T A+ G DV + LPL HV L +
Sbjct: 158 ALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTG-EDVLVQGLPLFHVHGLVLGIL 216
Query: 338 -MLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRXXXXXXXXX 396
L G ++ + + + ++ G T++ VP ++ R+
Sbjct: 217 GPLRRGGSVRHLGRFSTEGAARELNDGA---------TMLFGVPTMYHRI---------- 257
Query: 397 XXXLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAP 456
E + D + K++ R ++ G A
Sbjct: 258 -----------------------------AETLPADPELAKALAGA-----RLLVSGSAA 283
Query: 457 LSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEG 516
L I G + + YG+TET ++ +P G VG P+P ++LV D
Sbjct: 284 LPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVEEDGT 343
Query: 517 GYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCL 576
D GEI V G N+ Y N P T+ + D +F TGD+ PDG +
Sbjct: 344 PIAALDGES-VGEIQVRGPNLFTEYLNRPDATAAAFTED----GFFRTGDMAVRDPDGYV 398
Query: 577 EIIDRK-KDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADP 618
I+ RK D++K G I G++E AL+ V + +P
Sbjct: 399 RIVGRKATDLIK-SGGYKIGAGEIENALLEHPEVREAAVTGEP 440
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 113/495 (22%), Positives = 186/495 (37%), Gaps = 77/495 (15%)
Query: 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSS 188
E + E+ + ASG+ G + +++ +R + T V I
Sbjct: 51 ESXNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPX 110
Query: 189 LGEDALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFENDGSEKDSGVSGGIS 248
L H LN+++ TTL+ K V+ E G E+ V G
Sbjct: 111 YKSFELEHILNDSEATTLVVHSXLYE----------NFKPVL--EKTGVERVFVVGG--- 155
Query: 249 NWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
V+S SEV G + + + VA+I YT G+TG PKGV +TH N+ A A +
Sbjct: 156 --EVNSLSEVXDSGSEDFENVKVNPEEDVALIPYTGGTTGXPKGVXLTHFNLAANALQL- 212
Query: 309 TLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV 368
+ D + P H E ++ + G + I+K
Sbjct: 213 AVATGLSHXDTIVGCXPXFHSAEFGLVNLXVTVGNEYVVXGXFNQEXLAENIEK------ 266
Query: 369 SVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLER 428
K T AVP + + + ++ Y + A GAW +
Sbjct: 267 --YKGTFSWAVPPALNVLVNTLES--------SNKTYDWSYLKVFAT------GAWPVAP 310
Query: 429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTF 488
L + ++ + R+R Q +G TE C T
Sbjct: 311 ALVEKLLKLAAEKCNNPRLRH------------------------NQIWGXTEACPXVTT 346
Query: 489 SE--WDDPSVGRVGPPVPCCYIKLVSWDEG---GYKTSDKPMPRGEIVVGGFNVTAGYFN 543
+ D S + G P +K++S ++G G S GEIV+ G N+ GY+
Sbjct: 347 NPPLRLDKSTTQ-GVPXSDIELKVISLEDGRELGVGES------GEIVIRGPNIFKGYWK 399
Query: 544 NPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAAL 603
+ E + DE+G +F TGD+G + +G L DR K+++K + G I+ ++EA L
Sbjct: 400 REKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYK-GYTIAPFELEALL 458
Query: 604 ISSDYVDNIMIHADP 618
+ V ++ + P
Sbjct: 459 XKHEAVXDVAVIGKP 473
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 75/154 (48%), Gaps = 9/154 (5%)
Query: 453 GGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLV 511
GGAPLS + + P + Q YGLTET + + D G G VP K++
Sbjct: 317 GGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVI 376
Query: 512 SWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVY 571
D K S P RGE+ V G + GY NNP T E+ +DE G W +TGDIG
Sbjct: 377 DLDT---KKSLGPNRRGEVCVKGPMLMKGYVNNPEATKEL--IDEEG--WLHTGDIGYYD 429
Query: 572 PDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS 605
+ I+DR K ++K + G + ++E+ L+
Sbjct: 430 EEKHFFIVDRLKSLIKYK-GYQVPPAELESVLLQ 462
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 75/176 (42%), Gaps = 17/176 (9%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
+Y E +++ L N+G VD R A+ +E C E+FI + V
Sbjct: 54 SYAEYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113
Query: 192 DALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFENDGSEK-----DSGVSGG 246
L+HSL ++ T + TIK ++ ++ + D+ +
Sbjct: 114 RELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRN 173
Query: 247 IS-NWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
+ SSF VE VD + VA+IM +SGSTGLPKGV +TH NIV
Sbjct: 174 TPPGFQASSFKTVE-------VD----RKEQVALIMNSSGSTGLPKGVQLTHENIV 218
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 75/154 (48%), Gaps = 9/154 (5%)
Query: 453 GGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLV 511
GGAPLS + + P + Q YGLTET + + D G G VP K++
Sbjct: 317 GGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVI 376
Query: 512 SWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVY 571
D K S P RGE+ V G + GY NNP T E+ +DE G W +TGDIG
Sbjct: 377 DLDT---KKSLGPNRRGEVCVKGPMLMKGYVNNPEATKEL--IDEEG--WLHTGDIGYYD 429
Query: 572 PDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS 605
+ I+DR K ++K + G + ++E+ L+
Sbjct: 430 EEKHFFIVDRLKSLIKYK-GYQVPPAELESVLLQ 462
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 76/176 (43%), Gaps = 17/176 (9%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
+Y E +++C L N+G VD R A+ +E C E+FI + V
Sbjct: 54 SYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113
Query: 192 DALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFENDGSEK-----DSGVSGG 246
L+HSL ++ T + TIK ++ ++ + D+ +
Sbjct: 114 RELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRN 173
Query: 247 IS-NWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
+ SSF VE VD + VA+IM +SGSTGLPKGV +TH NIV
Sbjct: 174 TPPGYQASSFKTVE-------VD----RKEQVALIMNSSGSTGLPKGVQLTHENIV 218
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 75/154 (48%), Gaps = 9/154 (5%)
Query: 453 GGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLV 511
GGAPLS + + P + Q YGLTET + + D G G VP K++
Sbjct: 317 GGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVI 376
Query: 512 SWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVY 571
D K S P RGE+ V G + GY NNP T E+ +DE G W +TGDIG
Sbjct: 377 DLDT---KKSLGPNRRGEVCVKGPMLMKGYVNNPEATKEL--IDEEG--WLHTGDIGYYD 429
Query: 572 PDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS 605
+ I+DR K ++K + G + ++E+ L+
Sbjct: 430 EEKHFFIVDRLKSLIKYK-GYQVPPAELESVLLQ 462
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 76/176 (43%), Gaps = 17/176 (9%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
+Y E +++C L N+G VD R A+ +E C E+FI + V
Sbjct: 54 SYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113
Query: 192 DALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFENDGSEK-----DSGVSGG 246
L+HSL ++ T + TIK ++ ++ + D+ +
Sbjct: 114 RELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRN 173
Query: 247 IS-NWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
+ SSF VE VD + VA+IM +SGSTGLPKGV +TH NIV
Sbjct: 174 TPPGFQASSFKTVE-------VD----RKEQVALIMNSSGSTGLPKGVQLTHENIV 218
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 71/145 (48%), Gaps = 13/145 (8%)
Query: 445 GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVP 504
G R I G APL AD+ R + G + + YG TET ++ D G VGP +P
Sbjct: 268 GHXRLFISGSAPLLADTHREWSAKTGHAVLERYGXTETNXNTSNPYDGDRVPGAVGPALP 327
Query: 505 CCYIKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCW 561
++ + G K +PRG+ I V G NV GY+ P KT ++ D +
Sbjct: 328 GVSARVTDPETG------KELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRDD----GF 377
Query: 562 FYTGDIGQVYPDGCLEIIDRKKDIV 586
F TGD+G++ G + I+ R KD+V
Sbjct: 378 FITGDLGKIDERGYVHILGRGKDLV 402
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 80/219 (36%), Gaps = 27/219 (12%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
+Y E+ RA A+ LV G V R A E VE + + R + + ++
Sbjct: 30 SYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTL 89
Query: 192 DALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFENDGSEKDSGVSGGISNWT 251
L + + + + ++CD + + GS D+ + T
Sbjct: 90 HELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASEAFAT 149
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT-- 309
+ + +A I+YTSG+TG KG ++H N+ + + +
Sbjct: 150 IDR------------------GADDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYW 191
Query: 310 -LIPNPGRSDVYLAYLPLAHV--LELAAESIMLCAGCAI 345
P+ DV + LP+ H L +A+ + G I
Sbjct: 192 RFTPD----DVLIHALPIYHTHGLFVASNVTLFARGSXI 226
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 111/480 (23%), Positives = 175/480 (36%), Gaps = 101/480 (21%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
T+ + RA ASGL+ G + R AIL++ C E ++ + L
Sbjct: 33 THRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNA 92
Query: 192 DALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFENDGSEKDSGVSGGISNWT 251
D + L + + ++ +K Y DGS
Sbjct: 93 DEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKA-YAIGDGS-------------- 137
Query: 252 VSSFSEVEKLGKRSPVD-PSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310
F+ + L +P P + +G VI++T+ G P+G +I+ GN++ +++
Sbjct: 138 -GPFAPFKDLASDTPFSAPEFGAADGF-VIIHTAAVGGRPRGALISQGNLLIAQSSLVDA 195
Query: 311 IPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSV 370
+DV L LPL HV L +ML A G D + + D+
Sbjct: 196 W-RLTEADVNLGMLPLFHVTGL---GLMLTLQQAGGASVIAAKFDPAQAAR-----DIEA 246
Query: 371 LKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLERML 430
K T+MA + N+ + +LA
Sbjct: 247 HKVTVMAEF------------------APMLGNILDQAAPAQLA---------------- 272
Query: 431 WDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSE 490
S+RAV G I +RF C A +G +ET STF+
Sbjct: 273 -------SLRAVTGLDTPETI----------ERFEATCPNATFWATFGQSETSGLSTFAP 315
Query: 491 WDD--PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNP 545
+ D S GR P + + D D+P+P GE IV+ G V GY+NN
Sbjct: 316 YRDRPKSAGR-----PLFWRTVAVVD-----AEDRPLPPGEVGEIVLRGPTVFKGYWNNA 365
Query: 546 GKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDR--KKDIVKLQHGEYISLGKVEAAL 603
T ++ W +TGD+G+ DG L R +K+++K GE + +VE AL
Sbjct: 366 AATQHAFR-----NGWHHTGDMGRFDADGYLFYAGRAPEKELIK-TGGENVYPAEVEGAL 419
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 97/351 (27%), Positives = 148/351 (42%), Gaps = 77/351 (21%)
Query: 273 SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG----RSDVYLAYLPLAH 328
S + V + Y+SG+TGLPKGVM+TH ++ T+ A + NP DV L LP+ H
Sbjct: 176 SPDDVVALPYSSGTTGLPKGVMLTHKGLI-TSVAQQVDGDNPNLYFHSEDVILCVLPMFH 234
Query: 329 VLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGT-KGDVSVLKPTLMAAVPAIFDRVR 387
+ L SIMLC G +G L M K + G+ G + K ++ VP + +
Sbjct: 235 IYAL--NSIMLC-GLRVG-APILIM----PKFEIGSLLGLIEKYKVSIAPVVPPVMMSIA 286
Query: 388 XXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRI 447
K L+++ G L + L D + K +A L
Sbjct: 287 KSPDLD----------------KHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARL---- 326
Query: 448 RFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFS-------EWDDPSVGRVG 500
GQ YG+TE AG + E D G G
Sbjct: 327 --------------------------GQGYGMTE--AGPVLAMCLAFAKEPFDIKPGACG 358
Query: 501 PPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMC 560
V +K+V + G ++P GEI + G + GY N+P TS +D+ G
Sbjct: 359 TVVRNAEMKIVDPETGASLPRNQP---GEICIRGDQIMKGYLNDPEATSRT--IDKEG-- 411
Query: 561 WFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDN 611
W +TGDIG + D L I+DR K+++K + G ++ ++EA LI+ + +
Sbjct: 412 WLHTGDIGYIDDDDELFIVDRLKELIKYK-GFQVAPAELEALLIAHPEISD 461
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 77/155 (49%), Gaps = 9/155 (5%)
Query: 452 CGGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKL 510
GGAPLS + + P I Q YGLTET + + D G VG VP K+
Sbjct: 314 SGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKV 373
Query: 511 VSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQV 570
V D G ++ RGE+ V G + +GY NNP T+ + +D+ G W ++GDI
Sbjct: 374 VDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNAL--IDKDG--WLHSGDIAYW 426
Query: 571 YPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS 605
D I+DR K ++K + G ++ ++E+ L+
Sbjct: 427 DEDEHFFIVDRLKSLIKYK-GYQVAPAELESILLQ 460
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 77/196 (39%), Gaps = 20/196 (10%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E F+ + A + +G N + R + +E +++F+ G + V E
Sbjct: 52 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 192 DALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFENDGSEKDSGVSGGISNWT 251
L++S+N +Q T + I+ +I ++ + G S +T
Sbjct: 112 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSK-----TDYQGFQSMYT 166
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITH-------------- 297
+ + V S +A+IM +SGSTGLPKGV + H
Sbjct: 167 FVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI 226
Query: 298 -GNIVATAAAIKTLIP 312
GN + AI +++P
Sbjct: 227 FGNQIIPDTAILSVVP 242
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 77/155 (49%), Gaps = 9/155 (5%)
Query: 452 CGGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKL 510
GGAPLS + + P I Q YGLTET + + D G VG VP K+
Sbjct: 314 SGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKV 373
Query: 511 VSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQV 570
V D G ++ RGE+ V G + +GY NNP T+ + +D+ G W ++GDI
Sbjct: 374 VDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNAL--IDKDG--WLHSGDIAYW 426
Query: 571 YPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS 605
D I+DR K ++K + G ++ ++E+ L+
Sbjct: 427 DEDEHFFIVDRLKSLIKYK-GYQVAPAELESILLQ 460
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 77/196 (39%), Gaps = 20/196 (10%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E F+ + A + +G N + R + +E +++F+ G + V E
Sbjct: 52 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 192 DALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFENDGSEKDSGVSGGISNWT 251
L++S+N +Q T + I+ +I ++ + G S +T
Sbjct: 112 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSK-----TDYQGFQSMYT 166
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITH-------------- 297
+ + V S +A+IM +SGSTGLPKGV + H
Sbjct: 167 FVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI 226
Query: 298 -GNIVATAAAIKTLIP 312
GN + AI +++P
Sbjct: 227 FGNQIIPDTAILSVVP 242
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 77/155 (49%), Gaps = 9/155 (5%)
Query: 452 CGGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKL 510
GGAPLS + + P I Q YGLTET + + D G VG VP K+
Sbjct: 319 SGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKV 378
Query: 511 VSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQV 570
V D G ++ RGE+ V G + +GY NNP T+ + +D+ G W ++GDI
Sbjct: 379 VDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNAL--IDKDG--WLHSGDIAYW 431
Query: 571 YPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS 605
D I+DR K ++K + G ++ ++E+ L+
Sbjct: 432 DEDEHFFIVDRLKSLIKYK-GYQVAPAELESILLQ 465
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 77/196 (39%), Gaps = 20/196 (10%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E F+ + A + +G N + R + +E +++F+ G + V E
Sbjct: 57 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 116
Query: 192 DALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFENDGSEKDSGVSGGISNWT 251
L++S+N +Q T + I+ +I ++ + G S +T
Sbjct: 117 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSK-----TDYQGFQSMYT 171
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITH-------------- 297
+ + V S +A+IM +SGSTGLPKGV + H
Sbjct: 172 FVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI 231
Query: 298 -GNIVATAAAIKTLIP 312
GN + AI +++P
Sbjct: 232 FGNQIIPDTAILSVVP 247
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 77/154 (50%), Gaps = 9/154 (5%)
Query: 452 CGGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKL 510
GGAPLS + + P I Q YGLTET + + D G VG VP K+
Sbjct: 319 SGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPKGDDKPGAVGKVVPFFEAKV 378
Query: 511 VSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQV 570
V D G ++ RGE+ V G + +GY NNP T+ + +D+ G W ++GDI
Sbjct: 379 VDLDTGKTLGVNQ---RGELSVRGPMIMSGYVNNPEATNAL--IDKDG--WLHSGDIAYW 431
Query: 571 YPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALI 604
D I+DR K ++K + G ++ ++E+ L+
Sbjct: 432 DEDEHFFIVDRLKSLIKYK-GCQVAPAELESILL 464
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 20/196 (10%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E F+ + A + +G N + R + +E +++F+ G + V E
Sbjct: 57 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNE 116
Query: 192 DALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFENDGSEKDSGVSGGISNWT 251
L++S+N +Q T + I+ +I ++ + G S +T
Sbjct: 117 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSK-----TDYQGFQSMYT 171
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITH-------------- 297
+ + V S +A+IM +SGSTGLPKGV + H
Sbjct: 172 FVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSHARDPI 231
Query: 298 -GNIVATAAAIKTLIP 312
GN +A AI +++P
Sbjct: 232 FGNQIAPDTAILSVVP 247
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 13/145 (8%)
Query: 445 GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVP 504
G +R I G APL AD+ R + G + + YG+TET ++ D G VGP +P
Sbjct: 268 GHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALP 327
Query: 505 CCYIKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCW 561
++ + G +PRG+ I V G NV GY+ P T ++ D +
Sbjct: 328 GVSARVTDPETG------XELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDD----GF 377
Query: 562 FYTGDIGQVYPDGCLEIIDRKKDIV 586
F TGD+G + G + I+ R D+V
Sbjct: 378 FITGDLGXIDERGYVHILGRGXDLV 402
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 82/219 (37%), Gaps = 27/219 (12%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
+Y E+ RA A+ LV G V R A E VE + + R + + ++
Sbjct: 30 SYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTL 89
Query: 192 DALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFENDGSEKDSGVSGGISNWT 251
L + + + + ++CD + + GS D+ + T
Sbjct: 90 HELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEAFAT 149
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT-- 309
+ + +A I+YTSG+TG G M++H N+ + + +
Sbjct: 150 IDR------------------GADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW 191
Query: 310 -LIPNPGRSDVYLAYLPLAHV--LELAAESIMLCAGCAI 345
P+ DV + LP+ H L +A+ + G I
Sbjct: 192 RFTPD----DVLIHALPIYHTHGLFVASNVTLFARGSMI 226
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 13/145 (8%)
Query: 445 GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVP 504
G +R I G APL AD+ R + G + + YG+TET ++ D G VGP +P
Sbjct: 268 GHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALP 327
Query: 505 CCYIKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCW 561
++ + G +PRG+ I V G NV GY+ P T ++ D +
Sbjct: 328 GVSARVTDPETG------XELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDD----GF 377
Query: 562 FYTGDIGQVYPDGCLEIIDRKKDIV 586
F TGD+G + G + I+ R D+V
Sbjct: 378 FITGDLGXIDERGYVHILGRGXDLV 402
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 82/219 (37%), Gaps = 27/219 (12%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
+Y E+ RA A+ LV G V R A E VE + + R + + ++
Sbjct: 30 SYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTL 89
Query: 192 DALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFENDGSEKDSGVSGGISNWT 251
L + + + + ++CD + + GS D+ + T
Sbjct: 90 HELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEAFAT 149
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT-- 309
+ + +A I+YTSG+TG G M++H N+ + + +
Sbjct: 150 IDR------------------GADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW 191
Query: 310 -LIPNPGRSDVYLAYLPLAHV--LELAAESIMLCAGCAI 345
P+ DV + LP+ H L +A+ + G I
Sbjct: 192 RFTPD----DVLIHALPIYHTHGLFVASNVTLFARGSMI 226
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 13/145 (8%)
Query: 445 GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVP 504
G +R I G APL AD+ R + G + + YG+TET ++ D G VGP +P
Sbjct: 268 GHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALP 327
Query: 505 CCYIKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCW 561
++ + G +PRG+ I V G NV GY+ P T ++ D +
Sbjct: 328 GVSARVTDPETG------XELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDD----GF 377
Query: 562 FYTGDIGQVYPDGCLEIIDRKKDIV 586
F TGD+G + G + I+ R D+V
Sbjct: 378 FITGDLGXIDERGYVHILGRGXDLV 402
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 82/219 (37%), Gaps = 27/219 (12%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
+Y E+ RA A+ LV G V R A E VE + + R + + ++
Sbjct: 30 SYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTL 89
Query: 192 DALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFENDGSEKDSGVSGGISNWT 251
L + + + + ++CD + + GS D+ + T
Sbjct: 90 HELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEAFAT 149
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT-- 309
+ + +A I+YTSG+TG G M++H N+ + + +
Sbjct: 150 IDR------------------GADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW 191
Query: 310 -LIPNPGRSDVYLAYLPLAHV--LELAAESIMLCAGCAI 345
P+ DV + LP+ H L +A+ + G I
Sbjct: 192 RFTPD----DVLIHALPIYHTHGLFVASNVTLFARGSMI 226
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 10/159 (6%)
Query: 453 GGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFS-EWDDPSVGRVGPPVPCCYIKL 510
GGAPL+ + + P I Q YGLTET + + D G G VP K+
Sbjct: 349 GGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITPRGRDDKPGACGKVVPFFSAKI 408
Query: 511 VSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQV 570
V D G ++ RGE+ V G + GY NNP TS + +D+ G W ++GDI
Sbjct: 409 VDLDTGKTLGVNQ---RGELCVKGPMIMKGYVNNPEATSAL--IDKDG--WLHSGDIAYY 461
Query: 571 YPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYV 609
DG I+DR K ++K + G + ++E+ L+ ++
Sbjct: 462 DKDGYFFIVDRLKSLIKYK-GYQVPPAELESILLQHPFI 499
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 9/171 (5%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E F+ AC A + +G + A+ +E +++F+ G + V E
Sbjct: 86 TYSEYFEMACRLAETMKRYGLGLQHHIAVCSENSLQFFMPVCGALFIGVGVAPTNDIYNE 145
Query: 192 DALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFEN--DGSEKDSGVSGGISN 249
L +SL+ +Q T + C I+ ++ ++ D K S S I +
Sbjct: 146 RELYNSLSISQPTIVFCSKRALQKILGVQKKLPIIQKIVILDSREDYMGKQSMYSF-IES 204
Query: 250 WTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNI 300
+ F+E + + S + A+IM +SGSTGLPKGV +TH NI
Sbjct: 205 HLPAGFNEYDY------IPDSFDRETATALIMNSSGSTGLPKGVELTHKNI 249
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 104/507 (20%), Positives = 174/507 (34%), Gaps = 97/507 (19%)
Query: 115 SDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQG 174
++ R + ++ D TYGE+ +RA FAS L G + + R ++ V +AF G
Sbjct: 33 NETRAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLG 92
Query: 175 CFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFEN 234
+ V + L ++ L + +I E+
Sbjct: 93 ALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESA---------EH 143
Query: 235 DGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQ------------NGVAVIMY 282
DG + VS E E + +P+ L + +A +Y
Sbjct: 144 DGCQ-----------LIVSQPRESEP--RLAPLFEELIDAAAPAAKAAATGCDDIAFWLY 190
Query: 283 TSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAG 342
+SGSTG PKG + TH N+ TA I +DV + A + G
Sbjct: 191 SSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFS-----------AAKLFFAYG 239
Query: 343 CAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTK 402
+G G T ++ ++ I + + L+ P +F
Sbjct: 240 --LGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVF------------------- 278
Query: 403 NLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQ 462
+G+ + + +V ++ A IR G L +
Sbjct: 279 ---------------------YGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIG 317
Query: 463 RFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSD 522
G I G TE + G G PVP I+L DE G+ D
Sbjct: 318 ERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIEL--RDEAGHAVPD 375
Query: 523 KPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRK 582
+ G++ + G + Y+NN K+ + + W +GD P+GC R
Sbjct: 376 GEV--GDLYIKGPSAAVMYWNNREKSRATFLGE-----WIRSGDKYCRLPNGCYVYAGRS 428
Query: 583 KDIVKLQHGEYISLGKVEAALISSDYV 609
D++K+ G+Y+S +VE L+ D V
Sbjct: 429 DDMLKVS-GQYVSPVEVEMVLVQHDAV 454
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 18/175 (10%)
Query: 448 RFMICGGAPLSADSQRFINICMGAPIG--QAYGLTETCAGSTFSEWDDP--SVGRVGPPV 503
R+ I GGAP+ + I I I Q Y LTE+C G T +D G G
Sbjct: 287 RYFITGGAPMP---EALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRAT 343
Query: 504 PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFY 563
+ V D+G + + GE+V+ + Y+N P T + + + G WF
Sbjct: 344 MFTDVA-VRGDDGVIREHGE----GEVVIKSDILLKEYWNRPEATRDAF---DNG--WFR 393
Query: 564 TGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADP 618
TGDIG++ +G L I DR KD++ + GE + ++E+ +I V + + P
Sbjct: 394 TGDIGEIDDEGYLYIKDRLKDMI-ISGGENVYPAEIESVIIGVPGVSEVAVIGLP 447
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 81/202 (40%), Gaps = 21/202 (10%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY ++ A A L G R A+L VE+ F G + V I + L
Sbjct: 45 TYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAA 104
Query: 192 DALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFENDGSEKDSGVSGGISNWT 251
+ L+++ +I D + G +++W
Sbjct: 105 PEVSFILSDSGSKVVIYGAPSAPVI------------------DAIRAQADPPGTVTDW- 145
Query: 252 VSSFSEVEKLGKRSPVDPSLP-SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310
+ + S E+L + +P++ + IMYTSG+TG PKGV+ TH ++ + A++ +
Sbjct: 146 IGADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWAST 205
Query: 311 IPNPGRSDVYLAYLPLAHVLEL 332
I R D L LP+ HV L
Sbjct: 206 IDVRYR-DRLLLPLPMFHVAAL 226
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 99/486 (20%), Positives = 175/486 (36%), Gaps = 106/486 (21%)
Query: 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSS 188
E TY ++ A A L + +R + + ++ I C+ +I + I +
Sbjct: 25 ESYTYQNLYCEASLLAKRLKAYQQ---SRVGLYIDNSIQSIILIHACWLANIEIAMINTR 81
Query: 189 LGEDALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFENDGS-----EKDSGV 243
L + + + + V + C ++ ++ + D + + G+
Sbjct: 82 LTPNEMTNQMRSIDVQLIFC----TLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGI 137
Query: 244 SGGISNWTVSSFSEVEKLGKRSPVDPSLPSQN--GVAVIMYTSGSTGLPKGVMITHGNIV 301
SN TV + K SP + S N +A IM+TSG+TG K V T N
Sbjct: 138 QYDTSNETV--------VPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHY 189
Query: 302 ATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIK 361
A+A K + R +L+ LP+ H+ L+ + G + + IK
Sbjct: 190 ASAIGCKESL-GFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTMIK 248
Query: 362 KGTKGDVSVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWF 421
+S++ TL +W
Sbjct: 249 NERITHISLVPQTL-------------------------------------------NWL 265
Query: 422 GAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTE 481
GL ++ ++ GGA LSA + + PI ++G+TE
Sbjct: 266 MQQGLHEPY---------------NLQKILLGGAKLSA-TMIETALQYNLPIYNSFGMTE 309
Query: 482 TCAG--STFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTA 539
TC+ + E VG P +K+ + ++ G+ GE+++ G NV
Sbjct: 310 TCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGH---------GELMIKGANVMN 360
Query: 540 GYFNNPGKTSEVYKVDERGMC---WFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISL 596
GY +Y D G +F TGDI ++ +G + I DR+KD++ + GE I
Sbjct: 361 GY---------LYPTDLTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLI-ISGGENIYP 410
Query: 597 GKVEAA 602
++E
Sbjct: 411 YQIETV 416
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 96/380 (25%), Positives = 151/380 (39%), Gaps = 69/380 (18%)
Query: 280 IMYTSGSTGLPKGVMITHGNIVA-TAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIM 338
I+YTSGSTG PKGV IT+ +V+ T A++ N V+L P + L S+M
Sbjct: 149 IIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF--NLQTGQVFLNQAPFSFDL-----SVM 201
Query: 339 LCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRXXXXXXXXXXX 398
+ G TL D M A P
Sbjct: 202 DIYPSLVT-GGTLWAIDKD------------------MIARP------------------ 224
Query: 399 XLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSV--RAVLGGRIRFMICGGAP 456
K+LF A++E S W + + ++ ++L F+ CG
Sbjct: 225 ---KDLF--------ASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVL 273
Query: 457 LSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGP-PVPCCY--IKLVSW 513
+ +++ I A I YG TE T + + + PV C +L+
Sbjct: 274 PNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIM 333
Query: 514 DEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPD 573
E G D +GEIV+ G +V+ GY +P T + + + + G + TGD G V +
Sbjct: 334 KEDGTIAPDGE--KGEIVIVGPSVSVGYLGSPELTEKAFTMID-GERAYKTGDAGYV-EN 389
Query: 574 GCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDN---IMIHADPFHNYCVALVVPS 630
G L R +KL HG + L ++E L + YV+ + I ++Y +A+VVP
Sbjct: 390 GLLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPG 448
Query: 631 HKALEKWAHEASIKYEDLSE 650
+ EK S ++L+E
Sbjct: 449 EHSFEKEFKLTSAIKKELNE 468
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 96/380 (25%), Positives = 151/380 (39%), Gaps = 69/380 (18%)
Query: 280 IMYTSGSTGLPKGVMITHGNIVA-TAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIM 338
I+YTSGSTG PKGV IT+ +V+ T A++ N V+L P + L S+M
Sbjct: 149 IIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF--NLQTGQVFLNQAPFSFDL-----SVM 201
Query: 339 LCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRXXXXXXXXXXX 398
+ G TL D M A P
Sbjct: 202 DIYPSLVT-GGTLWAIDKD------------------MIARP------------------ 224
Query: 399 XLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSV--RAVLGGRIRFMICGGAP 456
K+LF A++E S W + + ++ ++L F+ CG
Sbjct: 225 ---KDLF--------ASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVL 273
Query: 457 LSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGP-PVPCCY--IKLVSW 513
+ +++ I A I YG TE T + + + PV C +L+
Sbjct: 274 PNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIM 333
Query: 514 DEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPD 573
E G D +GEIV+ G +V+ GY +P T + + + + G + TGD G V +
Sbjct: 334 KEDGTIAPDGE--KGEIVIVGPSVSVGYLGSPELTEKAFTMID-GERAYKTGDAGYV-EN 389
Query: 574 GCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDN---IMIHADPFHNYCVALVVPS 630
G L R +KL HG + L ++E L + YV+ + I ++Y +A+VVP
Sbjct: 390 GLLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPG 448
Query: 631 HKALEKWAHEASIKYEDLSE 650
+ EK S ++L+E
Sbjct: 449 EHSFEKEFKLTSAIKKELNE 468
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 107/505 (21%), Positives = 180/505 (35%), Gaps = 99/505 (19%)
Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
G+ W +Y E+ RA A+G G R + E+F FR V
Sbjct: 47 GNTHW-SYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFA 105
Query: 186 YSSLGEDALIHSLNETQVTTLICDXXXX-----XXXXXXXXXXXTIKNVIYFENDGSEKD 240
S + + + I T+KN+I
Sbjct: 106 LPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNII---------- 155
Query: 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGN- 299
V+G F +E L P + S + VA + + GSTGL K + TH +
Sbjct: 156 --VAG-----EAEEFLPLEDLHTEPVKLPEVKSSD-VAFLQLSGGSTGLSKLIPRTHDDY 207
Query: 300 IVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIM--LCAGCAIGYGSTLTMTDTS 357
I + +++ + S VYLA LP+AH L++ ++ L AG + + + D
Sbjct: 208 IYSLKRSVEVCWLD--HSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAF 265
Query: 358 SKIKKGTKGDVSVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVE 417
I++ K T+ A VP +
Sbjct: 266 PLIERE--------KVTITALVPPL----------------------------------- 282
Query: 418 GSWFGAWGLERMLW-DAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQA 476
M+W DA S R ++ + GGA SA++ R + G + Q
Sbjct: 283 ----------AMVWMDA---ASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQV 329
Query: 477 YGLTETCAGSTFSEWDDPS---VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVG 533
+G+ E ++ DDP V G P+ Y + WD+ + KP G ++
Sbjct: 330 FGMAEGLV--NYTRLDDPEEIIVNTQGKPM-SPYDESRVWDD--HDRDVKPGETGHLLTR 384
Query: 534 GFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEY 593
G GY+ + + D ++ TGDI ++ DG + + R KD + + GE
Sbjct: 385 GPYTIRGYYKAEEHNAASFTED----GFYRTGDIVRLTRDGYIVVEGRAKDQIN-RGGEK 439
Query: 594 ISLGKVEAALISSDYVDNIMIHADP 618
++ +VE L++ V + + + P
Sbjct: 440 VAAEEVENHLLAHPAVHDAAMVSMP 464
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 26/186 (13%)
Query: 447 IRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGST-FSEWDDPSVGRVGPPVPC 505
++ + GGA R + + + Q +G+ E T + D+ G P+
Sbjct: 309 LKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISS 368
Query: 506 C-YIKLVSWDEGGYKTSDKPMPRGEI---VVGGFNVTAGYFNNPGKTSEVYKVDERGMCW 561
IK+V DE + +P GEI G GY+ +P S+V+ D +
Sbjct: 369 DDEIKIV--DE-----QYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDN----Y 417
Query: 562 FYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN 621
+Y+GD+ Q PDG L ++ R KD + + GE I+ ++E I++H + H
Sbjct: 418 YYSGDLVQRTPDGNLRVVGRIKDQIN-RGGEKIASEEIEKL---------ILLHPEVMHA 467
Query: 622 YCVALV 627
VA+V
Sbjct: 468 ALVAIV 473
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 86/200 (43%), Gaps = 23/200 (11%)
Query: 449 FMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYI 508
FM CG + ++ + A I YG TE T E + + R +P +
Sbjct: 265 FMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISR-SESLPVGFA 323
Query: 509 K----LVSWDEGGYKTSDKPMP---RGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCW 561
K + DE G +P+P +GEIV+ G +V+ GY P T + + E G
Sbjct: 324 KPDMNIFIMDEEG-----QPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHE-GQWA 377
Query: 562 FYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH- 620
+ TGD G + DG + R +KL HG + L ++E + S YV + ++ P+
Sbjct: 378 YRTGDAGFIQ-DGQIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVV--IPYQP 433
Query: 621 ----NYCVALVVPSHKALEK 636
Y +A +VP EK
Sbjct: 434 NGTVEYLIAAIVPEEHEFEK 453
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 280 IMYTSGSTGLPKGVMITHGNI 300
I+YTSGSTG PKGV I+ N+
Sbjct: 148 IIYTSGSTGNPKGVQISAANL 168
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 17/165 (10%)
Query: 447 IRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPC 505
+++ + G PL+ + RF+ G + + +G TET W +P G +G P P
Sbjct: 343 LKYAVVAGEPLNPEVFNRFLEFT-GIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPG 401
Query: 506 CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFN-----VTAGYFNNPGKTSEVYKVDERGMC 560
I+L+ D + ++ GEIV+ + Y +P +T E +
Sbjct: 402 YKIELMDRDGRLCEVGEE----GEIVINTMEGKPVGLFVHYGKDPERTEETWH-----DG 452
Query: 561 WFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS 605
+++TGD+ + DG L + R DI+K G + +VE+ALI
Sbjct: 453 YYHTGDMAWMDEDGYLWFVGRADDIIKTS-GYKVGPFEVESALIQ 496
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 10/111 (9%)
Query: 471 APIGQAYGLTETCAGSTFSEW-----DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPM 525
A I AYG TE + E D+ + +G P P ++ DE G + S
Sbjct: 291 AKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYII--DEDGKELSSGE- 347
Query: 526 PRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCL 576
+GEI+V G V+ GY NNP KT+E + +G ++TGDIG + D L
Sbjct: 348 -QGEIIVTGPAVSKGYLNNPEKTAEAF-FTFKGQPAYHTGDIGSLTEDNIL 396
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 20/23 (86%)
Query: 280 IMYTSGSTGLPKGVMITHGNIVA 302
I++TSG+TG PKGV I+H N+++
Sbjct: 150 IIFTSGTTGQPKGVQISHDNLLS 172
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 528 GEIVVGGFNVTAGYFNNPGKTSEVYKVDE----RGMCWFYTGDIGQVYPDGCLEIIDRKK 583
GE+ V G + GY + P T+E + D G + TGD+ + DG LE + R
Sbjct: 410 GELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRAD 469
Query: 584 DIVKLQHGEYISLGKVEAALISSDYVDNIMIHA 616
D VK++ G + G+VEA L+ V + A
Sbjct: 470 DQVKIR-GFRVEPGEVEARLVGHPAVRQAAVLA 501
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVAT 303
VA +M+TSGSTG PKGVM H + T
Sbjct: 216 VACVMFTSGSTGRPKGVMSPHRALTGT 242
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 20/173 (11%)
Query: 476 AYGLTETCAGSTFSEWDDPSVGR---VGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVV 532
AYG TET +T ++G +G P+ I +V DE S GE+ +
Sbjct: 322 AYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIV--DENLQLKSVGEA--GELCI 377
Query: 533 GGFNVTAGYFNNPGKTSEVYKVDE---RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQ 589
GG + GY+ P TS+ + VD G + TGD + DG +E + R + VK++
Sbjct: 378 GGEGLARGYWKRPELTSQKF-VDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIR 436
Query: 590 HGEYISLGKVEAALISSDYVDN--IMIHAD----PFHNYCVALVVPSHKALEK 636
G + L +VE+ L+ Y+ + +H D P+ C V H LE+
Sbjct: 437 -GHRVELEEVESILLKHMYISETAVSVHKDHQEQPY--LCAYFVSEKHIPLEQ 486
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 71/173 (41%), Gaps = 29/173 (16%)
Query: 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSS 188
E TY E+ +A A + G DT I+ E ++ FI + V I
Sbjct: 63 EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIE 122
Query: 189 LGEDALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFENDGSEKDSGVSGGIS 248
++ + + L+++Q L+ T K++++ +
Sbjct: 123 YPKERIQYILDDSQARMLL-----------------TQKHLVHL----------IHNIQF 155
Query: 249 NWTVSSFSEVEKLGKRSPVDPSLPSQN-GVAVIMYTSGSTGLPKGVMITHGNI 300
N V F E + + R + +PS++ +A ++YTSG+TG PKG M+ H I
Sbjct: 156 NGQVEIFEE-DTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGI 207
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 448 RFMICGGAPLSADSQRFINICMGAPIG--QAYGLTETCAGSTFSEWDDP--SVGRVGPPV 503
R+ I GGAP+ + I I I Q Y LTE+C G T +D G G
Sbjct: 273 RYFITGGAPMP---EALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRAT 329
Query: 504 PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFY 563
+ V D+G + + GE+V+ + Y+N P T + + + G WF
Sbjct: 330 MFTDVA-VRGDDGVIREHGE----GEVVIKSDILLKEYWNRPEATRDAF---DNG--WFR 379
Query: 564 TGDIGQVYPDGCLEIID 580
TGDIG++ +G L I D
Sbjct: 380 TGDIGEIDDEGYLYIKD 396
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 81/202 (40%), Gaps = 21/202 (10%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY ++ A A L G R A+L VE+ F G + V I + L
Sbjct: 31 TYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAA 90
Query: 192 DALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFENDGSEKDSGVSGGISNWT 251
+ L+++ +I D + G +++W
Sbjct: 91 PEVSFILSDSGSKVVIYGAPSAPVI------------------DAIRAQADPPGTVTDW- 131
Query: 252 VSSFSEVEKLGKRSPVDPSLP-SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310
+ + S E+L + +P++ + IMYTSG+TG PKGV+ TH ++ + A++ +
Sbjct: 132 IGADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWAST 191
Query: 311 IPNPGRSDVYLAYLPLAHVLEL 332
I R D L LP+ HV L
Sbjct: 192 IDVRYR-DRLLLPLPMFHVAAL 212
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 528 GEIVVGGFNVTAGYFNNPGKTSEVYKVD--ERGMCWFYTGDIGQVYPDGCLEIIDRKKDI 585
GE+ + G V+ GY N T E + + + G + TGD+ + PDG +E R D
Sbjct: 804 GELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQ 863
Query: 586 VKLQHGEYISLGKVEAALISSDYVDNIMIHAD 617
VK++ G I L ++E L V + ++ AD
Sbjct: 864 VKIR-GHRIELEEIEKQLQEYPGVKDAVVVAD 894
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 60/171 (35%), Gaps = 31/171 (18%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
+Y E+ + A A L G + A+ + +E I G + + + L E
Sbjct: 491 SYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPE 550
Query: 192 DALIHSLNETQVTTLICDXXXXXXXXXXXXXXXT--IKNVIYFENDGSEKDSGVSGGISN 249
D + + L ++ L+ T I + FE S+ + +
Sbjct: 551 DRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDPATAID----- 605
Query: 250 WTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNI 300
P DP A IMYTSG+TG PKG + TH NI
Sbjct: 606 ----------------PNDP--------AYIMYTSGTTGKPKGNITTHANI 632
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 108/504 (21%), Positives = 174/504 (34%), Gaps = 97/504 (19%)
Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
G+ W +Y E+ RA A+G G R + E+F FR V
Sbjct: 47 GNTHW-SYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFA 105
Query: 186 YSSLGEDALIHSLNETQVTTLICDXXXX-----XXXXXXXXXXXTIKNVIYFENDGSEKD 240
S + + + I T+KN+I
Sbjct: 106 LPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNII---------- 155
Query: 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGN- 299
V+G F +E L P + S + VA + + GSTGL K + TH +
Sbjct: 156 --VAG-----EAEEFLPLEDLHTEPVKLPEVKSSD-VAFLQLSGGSTGLSKLIPRTHDDY 207
Query: 300 IVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIM--LCAGCAIGYGSTLTMTDTS 357
I + +++ + S VYLA LP AH L++ ++ L AG + + + D
Sbjct: 208 IYSLKRSVEVCWLD--HSTVYLAALPXAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAF 265
Query: 358 SKIKKGTKGDVSVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVE 417
I++ K T+ A VP LA V
Sbjct: 266 PLIERE--------KVTITALVPP-------------------------------LAXV- 285
Query: 418 GSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAY 477
W A R D + V V G + SA++ R + G + Q +
Sbjct: 286 --WXDAASSRR---DDLSSLQVLQVGGAK----------FSAEAARRVKAVFGCTLQQVF 330
Query: 478 GLTETCAGSTFSEWDDPS---VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG 534
G E ++ DDP V G P Y + WD+ + KP G ++ G
Sbjct: 331 GXAEGLV--NYTRLDDPEEIIVNTQGKPX-SPYDESRVWDD--HDRDVKPGETGHLLTRG 385
Query: 535 FNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYI 594
GY+ + + D ++ TGDI ++ DG + + R KD + + GE +
Sbjct: 386 PYTIRGYYKAEEHNAASFTED----GFYRTGDIVRLTRDGYIVVEGRAKDQIN-RGGEKV 440
Query: 595 SLGKVEAALISSDYVDNIMIHADP 618
+ +VE L++ V + + P
Sbjct: 441 AAEEVENHLLAHPAVHDAAXVSXP 464
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 272 PSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT--LIPNPGRSDVYLAYLPLAH 328
P N +A + YTSGST P+GV+ITH + A AI + PG D +++LP H
Sbjct: 172 PVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGIKLRPG--DRCVSWLPFYH 228
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 85/182 (46%), Gaps = 21/182 (11%)
Query: 430 LW-DAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTF 488
LW A++ RA L ++ + GGA LSA I +G + Q +G+ E +
Sbjct: 287 LWLQALIEGESRAQLAS-LKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLV--NY 343
Query: 489 SEWDDPS---VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEI---VVGGFNVTAGYF 542
+ DD + + G P+ C ++ D G P+P+GE+ + G GY+
Sbjct: 344 TRLDDSAEKIIHTQGYPM-CPDDEVWVADAEG-----NPLPQGEVGRLMTRGPYTFRGYY 397
Query: 543 NNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAA 602
+P + + D G ++ +GD+ + P+G + + R+KD + + GE I+ ++E
Sbjct: 398 KSPQHNASAF--DANG--FYCSGDLISIDPEGYITVQGREKDQIN-RGGEKIAAEEIENL 452
Query: 603 LI 604
L+
Sbjct: 453 LL 454
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 260 KLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV 319
+L + S P+ N +A + YTSGST PKGV ++H N++ I T + +
Sbjct: 152 ELNRSSSWQPTSIKSNDIAFLQYTSGSTXHPKGVXVSHHNLLDNLNKIFTSF-HXNDETI 210
Query: 320 YLAYLPLAH 328
++LP H
Sbjct: 211 IFSWLPPHH 219
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 528 GEIVVGGFNVTAGYFNNPGKTSEVY----KVDERGMCWFYTGDIGQVYPDGCLEIIDRKK 583
GEI V +V GY+N P +T + K DER + TGD+G ++ + L + R K
Sbjct: 400 GEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIK 458
Query: 584 DIV 586
D++
Sbjct: 459 DLI 461
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 27/142 (19%)
Query: 528 GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMC------WFYTGDIGQVYPDGCLEIIDR 581
GE+V+ G V GY N P D +G C + TGDI + D + + R
Sbjct: 375 GELVIEGSLVANGYLNRP---------DAKGFCDINGRKXYRTGDIVRXDADSSILFLGR 425
Query: 582 KKDIVKLQHGEYISLGKVEAALIS-----SDYVDNIMIHADPFHNYCVALVVPSHKALE- 635
K + VK++ G+ + LG+V + S D V ++ H + V+ V S A+
Sbjct: 426 KDEQVKVR-GQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRG 484
Query: 636 --KWAHEASIKYEDLSELCNKA 655
+W +E Y++++ +A
Sbjct: 485 ELRWINE---NYKEINNSLRQA 503
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 274 QNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313
+N A ++YTSGSTG PKGV ++ N+ + + A LI N
Sbjct: 174 ENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGN 213
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 272 PSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311
P +A ++YTSG+TG PKGV + H N++A A ++
Sbjct: 172 PGAEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVF 211
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 73/187 (39%), Gaps = 37/187 (19%)
Query: 441 AVLGGR----IRFMICGGAPLSA------------DSQRFIN---ICMGAPIGQAYGLTE 481
AV GGR +R++I GG L+A D R +N I +TE
Sbjct: 284 AVRGGRDVSGLRYVIFGGEKLTAPMLRPWAKAFGLDRPRLVNGYGITETTVFTTFEEITE 343
Query: 482 TCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGY 541
+ D +GR P + V D+G P GE+ + G + GY
Sbjct: 344 A-----YLAQDASIIGRALP----SFGTRVVGDDG---RDVAPGETGELWLSGAQLAEGY 391
Query: 542 FNNPGKTSEVYK--VDER---GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISL 596
P T+E + DE+ + ++ TGD+ PDG R +KL+ G I L
Sbjct: 392 LRRPELTAEKFPEVTDEKTGESVRYYRTGDLVSELPDGRFAYEGRADLQIKLR-GYRIEL 450
Query: 597 GKVEAAL 603
+E A+
Sbjct: 451 SDIETAV 457
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 74/207 (35%), Gaps = 32/207 (15%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
+Y E+ C FA+ L++ G AI E +A C R I+
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 192 DALIHSLNETQVTTLIC-----------DXXXXXXXXXXXXXXXTIKNVIYFENDGSEKD 240
+A+ + ++ +I ++++VI + GS+ D
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID 228
Query: 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAV-------IMYTSGSTGLPKGV 293
+ E L R ++ + P A+ I+YTSGSTG PKGV
Sbjct: 229 --------------WQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGV 274
Query: 294 MITHGNIVATAAAIKTLIPNPGRSDVY 320
+ T G + AA + + D+Y
Sbjct: 275 LHTTGGYLVYAATTFKYVFDYHPGDIY 301
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 74/207 (35%), Gaps = 32/207 (15%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
+Y E+ C FA+ L++ G AI E +A C R I+
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 192 DALIHSLNETQVTTLIC-----------DXXXXXXXXXXXXXXXTIKNVIYFENDGSEKD 240
+A+ + ++ +I ++++VI + GS+ D
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID 228
Query: 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAV-------IMYTSGSTGLPKGV 293
+ E L R ++ + P A+ I+YTSGSTG PKGV
Sbjct: 229 --------------WQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGV 274
Query: 294 MITHGNIVATAAAIKTLIPNPGRSDVY 320
+ T G + AA + + D+Y
Sbjct: 275 LHTTGGYLVYAATTFKYVFDYHPGDIY 301
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 74/207 (35%), Gaps = 32/207 (15%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
+Y E+ C FA+ L++ G AI E +A C R I+
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 192 DALIHSLNETQVTTLIC-----------DXXXXXXXXXXXXXXXTIKNVIYFENDGSEKD 240
+A+ + ++ +I ++++VI + GS+ D
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID 228
Query: 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAV-------IMYTSGSTGLPKGV 293
+ E L R ++ + P A+ I+YTSGSTG PKGV
Sbjct: 229 --------------WQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGV 274
Query: 294 MITHGNIVATAAAIKTLIPNPGRSDVY 320
+ T G + AA + + D+Y
Sbjct: 275 LHTTGGYLVYAATTFKYVFDYHPGDIY 301
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 74/207 (35%), Gaps = 32/207 (15%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
+Y E+ C FA+ L++ G AI E +A C R I+
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 192 DALIHSLNETQVTTLIC-----------DXXXXXXXXXXXXXXXTIKNVIYFENDGSEKD 240
+A+ + ++ +I ++++VI + GS+ D
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGASIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID 228
Query: 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAV-------IMYTSGSTGLPKGV 293
+ E L R ++ + P A+ I+YTSGSTG PKGV
Sbjct: 229 --------------WQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGV 274
Query: 294 MITHGNIVATAAAIKTLIPNPGRSDVY 320
+ T G + AA + + D+Y
Sbjct: 275 LHTTGGYLVYAATTFKYVFDYHPGDIY 301
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 74/207 (35%), Gaps = 32/207 (15%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
+Y E+ C FA+ L++ G AI E +A C R I+
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 192 DALIHSLNETQVTTLIC-----------DXXXXXXXXXXXXXXXTIKNVIYFENDGSEKD 240
+A+ + ++ +I ++++VI + GS+ D
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID 228
Query: 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAV-------IMYTSGSTGLPKGV 293
+ E L R ++ + P A+ I+YTSGSTG PKGV
Sbjct: 229 --------------WQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGV 274
Query: 294 MITHGNIVATAAAIKTLIPNPGRSDVY 320
+ T G + AA + + D+Y
Sbjct: 275 LHTTGGYLVYAATTFKYVFDYHPGDIY 301
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 74/207 (35%), Gaps = 32/207 (15%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
+Y E+ C FA+ L++ G AI E +A C R I+
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 192 DALIHSLNETQVTTLIC-----------DXXXXXXXXXXXXXXXTIKNVIYFENDGSEKD 240
+A+ + ++ +I ++++VI + GS+ D
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID 228
Query: 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAV-------IMYTSGSTGLPKGV 293
+ E L R ++ + P A+ I+YTSGSTG PKGV
Sbjct: 229 --------------WQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGV 274
Query: 294 MITHGNIVATAAAIKTLIPNPGRSDVY 320
+ T G + AA + + D+Y
Sbjct: 275 LHTTGGYLVYAATTFKYVFDYHPGDIY 301
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 74/207 (35%), Gaps = 32/207 (15%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
+Y E+ C FA+ L++ G AI E +A C R I+
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 192 DALIHSLNETQVTTLIC-----------DXXXXXXXXXXXXXXXTIKNVIYFENDGSEKD 240
+A+ + ++ +I ++++VI + GS+ D
Sbjct: 169 EAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID 228
Query: 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAV-------IMYTSGSTGLPKGV 293
+ E L R ++ + P A+ I+YTSGSTG PKGV
Sbjct: 229 --------------WQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGV 274
Query: 294 MITHGNIVATAAAIKTLIPNPGRSDVY 320
+ T G + AA + + D+Y
Sbjct: 275 LHTTGGYLVYAATTFKYVFDYHPGDIY 301
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 528 GEIVVGGFNVT-AGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
GE++V + GY N P T+E K+ + W+ T D+ P+G + I+ R D++
Sbjct: 351 GELIVAASDSAFVGYLNQPQATAE--KLQD---GWYRTSDVAVWTPEGTVRILGRVDDMI 405
Query: 587 KLQHGEYISLGKVEAALISSDYVDNIMI 614
+ GE I ++E L ++ V +++
Sbjct: 406 -ISGGENIHPSEIERVLGTAPGVTEVVV 432
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 263 KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP-NPGRSDVYL 321
+R P P A I YTSG+TGLPK +I + + T + GR +V L
Sbjct: 149 QREPAQP--------AFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVL 200
Query: 322 AYLPLAHVL 330
+PL HV+
Sbjct: 201 GLMPLYHVV 209
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 528 GEIVVGGFNVT-AGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
GE++V + GY N P T+E K+ + W+ T D+ P+G + I+ R D++
Sbjct: 351 GELIVAASDSAFVGYLNQPQATAE--KLQD---GWYRTSDVAVWTPEGTVRILGRVPDMI 405
Query: 587 KLQHGEYISLGKVEAALISSDYVDNIMI 614
+ GE I ++E L ++ V +++
Sbjct: 406 -ISGGENIHPSEIERVLGTAPGVTEVVV 432
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 263 KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP-NPGRSDVYL 321
+R P P A I YTSG+TGLPK +I + + T + GR +V L
Sbjct: 149 QREPAQP--------AFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVL 200
Query: 322 AYLPLAHVL 330
+PL HV+
Sbjct: 201 GLMPLYHVV 209
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 528 GEIVVGGFNVT-AGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
GE++V + GY N P T+E K+ + W+ T D+ P+G + I+ R D++
Sbjct: 351 GELIVAASDSAFVGYLNQPQATAE--KLQD---GWYRTSDVAVWTPEGTVRILGRVDDMI 405
Query: 587 KLQHGEYISLGKVEAALISSDYVDNIMI 614
+ GE I ++E L ++ V +++
Sbjct: 406 -ISGGENIHPSEIERVLGTAPGVTEVVV 432
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 263 KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP-NPGRSDVYL 321
+R P P A I YTSG+TGLPK +I + + T + GR +V L
Sbjct: 149 QREPAQP--------AFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVL 200
Query: 322 AYLPLAHVL 330
+PL HV+
Sbjct: 201 GLMPLYHVV 209
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 528 GEIVVGGFNVT-AGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
GE++V + GY N P T+E K+ + W+ T D+ P+G + I+ R D++
Sbjct: 351 GELIVAASDSAFVGYLNQPQATAE--KLQD---GWYRTSDVAVWTPEGTVRILGRVDDMI 405
Query: 587 KLQHGEYISLGKVEAALISSDYVDNIMI 614
+ GE I ++E L ++ V +++
Sbjct: 406 -ISGGENIHPSEIERVLGTAPGVTEVVV 432
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 263 KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP-NPGRSDVYL 321
+R P P A I YTSG+TGLPK +I + + T + GR +V L
Sbjct: 149 QREPAQP--------AFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVL 200
Query: 322 AYLPLAHVL 330
+PL HV+
Sbjct: 201 GLMPLYHVV 209
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 528 GEIVVGGFNVT-AGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
GE++V + GY N P T+E K+ + W+ T D+ P+G + I+ R D++
Sbjct: 351 GELIVAASDSAFVGYLNQPEATAE--KLQD---GWYRTSDVAVWTPEGTVRILGRVDDMI 405
Query: 587 KLQHGEYISLGKVEAALISSDYVDNIMI 614
+ GE I ++E L ++ V +++
Sbjct: 406 -ISGGENIHPSEIERVLGTAPGVTEVVV 432
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 263 KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP-NPGRSDVYL 321
+R P P A I YTSG+TGLPK +I + + T + GR +V L
Sbjct: 149 QREPAQP--------AFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVL 200
Query: 322 AYLPLAHVL 330
+PL HV+
Sbjct: 201 GLMPLYHVV 209
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 15/154 (9%)
Query: 470 GAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGE 529
G I ++YG TET S+ G +G C ++++ D+G P G+
Sbjct: 347 GLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIID-DKGNVL---PPGTEGD 402
Query: 530 I-----VVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKD 584
I + + +GY +NP KT+ + RG W GD G DG + + R D
Sbjct: 403 IGIRVKPIRPIGIFSGYVDNPDKTA----ANIRGDFWLL-GDRGIKDEDGYFQFMGRADD 457
Query: 585 IVKLQHGEYISLGKVEAALISSDYVDNIMIHADP 618
I+ G I +VE AL+ V + + P
Sbjct: 458 IIN-SSGYRIGPSEVENALMEHPAVVETAVISSP 490
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 15/154 (9%)
Query: 470 GAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGE 529
G I ++YG TET S+ G +G C ++++ D+G P G+
Sbjct: 347 GLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIID-DKGNVL---PPGTEGD 402
Query: 530 I-----VVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKD 584
I + + +GY +NP KT+ + RG W GD G DG + + R D
Sbjct: 403 IGIRVKPIRPIGIFSGYVDNPDKTA----ANIRGDFWLL-GDRGIKDEDGYFQFMGRADD 457
Query: 585 IVKLQHGEYISLGKVEAALISSDYVDNIMIHADP 618
I+ G I +VE AL+ V + + P
Sbjct: 458 IIN-SSGYRIGPSEVENALMEHPAVVETAVISSP 490
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 528 GEIVVGGFNVT-AGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
GE++V + GY N P T+E K+ + W+ T D+ P+G + I+ R D +
Sbjct: 351 GELIVAASDSAFVGYLNQPQATAE--KLQD---GWYRTSDVAVWTPEGTVRILGRVDDXI 405
Query: 587 KLQHGEYISLGKVEAALISSDYVDNIMI 614
+ GE I ++E L ++ V +++
Sbjct: 406 -ISGGENIHPSEIERVLGTAPGVTEVVV 432
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 19/74 (25%)
Query: 263 KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP------GR 316
+R P P A I YTSG+TGLPK +I AA + L + GR
Sbjct: 149 QREPAQP--------AFIFYTSGTTGLPKAAIIPQ-----RAAESRVLFXSTQVGLRHGR 195
Query: 317 SDVYLAYLPLAHVL 330
+V L PL HV+
Sbjct: 196 HNVVLGLXPLYHVV 209
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 12/82 (14%)
Query: 278 AVIMYTSGSTGLPKGVMITHGNI-------VATAAAIKTLIPNPGRSDVYLAYLPLAHVL 330
A + YTSGST P GV+++H N+ ++ A IP P + +++LP H +
Sbjct: 186 AYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPP--NSALVSWLPFYHDM 243
Query: 331 ELAAESIMLCAGCAIGYGSTLT 352
L I +CA GY + LT
Sbjct: 244 GLV---IGICAPILGGYPAVLT 262
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVAT 303
VA +M+TSGSTG PKGVM H + T
Sbjct: 216 VACVMFTSGSTGRPKGVMSPHRALTGT 242
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 528 GEIVVGGFNVTAGYFNNPGKTSEVYKVD----ERGMCWFYTGDIGQVYPDGCLEIIDR 581
GE+ V G + GY + P T+E + D G + TGD+ + DG LE + R
Sbjct: 410 GELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGR 467
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT-------LIPNPGRSDVYLAYLPLAHV 329
A + YTSGST P GV+ +H N+ + + IP P + +++LP H
Sbjct: 185 TAYLQYTSGSTRTPAGVVXSHQNVRVNFEQLXSGYFADTDGIPPP--NSALVSWLPFYHD 242
Query: 330 LELAAESIMLCAGCAIGYGSTLT 352
L I +CA GY + LT
Sbjct: 243 XGLV---IGICAPILGGYPAVLT 262
>pdb|4GS5|A Chain A, The Crystal Structure Of Acyl-Coa Synthetase
(Amp-Forming)AMP-Acid Ligase Ii-Like Protein From
Dyadobacter Fermentans Dsm 18053
Length = 358
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 280 IMYTSGSTGLPKGVMITHGNIVATAAAI-KTLIPNPG 315
+++TSGSTG PK + +T + A+AA K L PG
Sbjct: 42 VLHTSGSTGXPKPITVTRAQLAASAAXTGKALSLGPG 78
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 561 WFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYV 609
+++TGD DG + I+ R D+V + G +S ++EAA+I V
Sbjct: 504 YYFTGDGAAKDKDGYIWILGRVDDVVNVS-GHRLSTAEIEAAIIEDPIV 551
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,585,766
Number of Sequences: 62578
Number of extensions: 834368
Number of successful extensions: 1910
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1754
Number of HSP's gapped (non-prelim): 124
length of query: 744
length of database: 14,973,337
effective HSP length: 106
effective length of query: 638
effective length of database: 8,340,069
effective search space: 5320964022
effective search space used: 5320964022
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)