Query 004569
Match_columns 744
No_of_seqs 592 out of 3846
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 01:33:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004569.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004569hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0372 Serine/threonine speci 100.0 2.1E-77 4.5E-82 595.4 17.8 286 394-703 3-288 (303)
2 KOG0374 Serine/threonine speci 100.0 2.8E-73 6E-78 610.1 27.3 321 394-733 9-330 (331)
3 PTZ00480 serine/threonine-prot 100.0 3.2E-69 6.9E-74 577.0 30.6 294 394-703 11-304 (320)
4 cd07420 MPP_RdgC Drosophila me 100.0 1.2E-68 2.5E-73 573.5 31.0 285 393-697 6-320 (321)
5 cd07419 MPP_Bsu1_C Arabidopsis 100.0 1.6E-68 3.5E-73 574.4 30.7 303 397-699 1-311 (311)
6 KOG0373 Serine/threonine speci 100.0 2E-70 4.4E-75 537.0 14.0 274 416-703 18-292 (306)
7 PTZ00244 serine/threonine-prot 100.0 6.6E-68 1.4E-72 563.5 29.5 291 392-698 2-292 (294)
8 cd07415 MPP_PP2A_PP4_PP6 PP2A, 100.0 9.7E-68 2.1E-72 560.8 30.5 283 394-700 2-284 (285)
9 cd07414 MPP_PP1_PPKL PP1, PPKL 100.0 8.5E-68 1.8E-72 563.3 29.0 290 394-699 2-291 (293)
10 PTZ00239 serine/threonine prot 100.0 3E-67 6.4E-72 560.2 31.1 286 394-703 3-289 (303)
11 cd07417 MPP_PP5_C PP5, C-termi 100.0 3.1E-66 6.7E-71 555.8 29.2 291 390-704 12-308 (316)
12 cd07416 MPP_PP2B PP2B, metallo 100.0 2.5E-65 5.5E-70 547.5 31.9 285 395-702 4-299 (305)
13 smart00156 PP2Ac Protein phosp 100.0 1.7E-65 3.8E-70 541.3 28.6 269 417-699 1-269 (271)
14 cd07418 MPP_PP7 PP7, metalloph 100.0 5.1E-63 1.1E-67 537.1 30.9 298 392-699 10-365 (377)
15 KOG0371 Serine/threonine prote 100.0 2.2E-61 4.7E-66 483.7 13.0 285 394-702 20-304 (319)
16 KOG0375 Serine-threonine phosp 100.0 3.9E-61 8.4E-66 498.7 11.1 271 416-699 60-341 (517)
17 KOG0377 Protein serine/threoni 100.0 1E-52 2.2E-57 444.9 14.0 268 416-694 133-426 (631)
18 KOG0376 Serine-threonine phosp 100.0 1.2E-46 2.7E-51 409.2 13.8 277 417-707 183-465 (476)
19 cd00144 MPP_PPP_family phospho 100.0 1.5E-31 3.3E-36 274.4 20.7 218 447-685 1-224 (225)
20 cd07425 MPP_Shelphs Shewanella 99.9 1E-22 2.2E-27 207.9 14.3 185 447-670 1-196 (208)
21 PRK13625 bis(5'-nucleosyl)-tet 99.9 4.3E-22 9.3E-27 208.4 15.8 131 444-576 1-145 (245)
22 cd07423 MPP_PrpE Bacillus subt 99.8 9.6E-21 2.1E-25 196.8 13.7 130 444-576 1-142 (234)
23 cd07413 MPP_PA3087 Pseudomonas 99.8 2.9E-20 6.3E-25 191.8 16.5 123 447-574 2-143 (222)
24 cd07422 MPP_ApaH Escherichia c 99.8 3.5E-21 7.7E-26 202.0 8.8 128 446-586 1-133 (257)
25 PRK00166 apaH diadenosine tetr 99.8 3.1E-20 6.7E-25 196.8 15.6 122 444-577 1-127 (275)
26 TIGR00668 apaH bis(5'-nucleosy 99.8 6.2E-20 1.3E-24 193.2 13.1 128 444-585 1-134 (279)
27 cd07421 MPP_Rhilphs Rhilph pho 99.8 1.9E-18 4.1E-23 182.2 19.7 159 445-608 3-243 (304)
28 PRK11439 pphA serine/threonine 99.8 2.9E-19 6.2E-24 183.9 12.2 120 444-574 17-146 (218)
29 cd07424 MPP_PrpA_PrpB PrpA and 99.8 7E-19 1.5E-23 179.5 13.7 147 444-608 1-157 (207)
30 PHA02239 putative protein phos 99.8 1.4E-18 3.1E-23 180.5 15.2 176 444-671 1-219 (235)
31 PRK09968 serine/threonine-spec 99.7 7.9E-18 1.7E-22 173.3 11.7 120 444-574 15-144 (218)
32 KOG0379 Kelch repeat-containin 99.6 4.4E-15 9.5E-20 169.8 13.6 149 18-192 105-256 (482)
33 KOG4441 Proteins containing BT 99.5 3E-14 6.6E-19 165.7 13.8 158 22-190 319-504 (571)
34 KOG0379 Kelch repeat-containin 99.5 2.8E-14 6.1E-19 163.1 12.6 151 18-194 53-207 (482)
35 TIGR03548 mutarot_permut cycli 99.5 1.5E-13 3.3E-18 149.2 16.7 140 21-190 58-199 (323)
36 KOG1230 Protein containing rep 99.5 6.3E-14 1.4E-18 150.3 11.9 157 14-192 54-222 (521)
37 PLN02153 epithiospecifier prot 99.5 3.4E-13 7.3E-18 147.7 17.1 157 12-190 9-172 (341)
38 KOG4693 Uncharacterized conser 99.5 5.8E-14 1.3E-18 143.3 7.9 150 19-191 123-282 (392)
39 PLN02193 nitrile-specifier pro 99.5 5.1E-13 1.1E-17 152.7 16.0 142 22-190 162-307 (470)
40 PLN02193 nitrile-specifier pro 99.5 4.8E-13 1E-17 152.9 15.6 132 35-192 227-358 (470)
41 PHA02713 hypothetical protein; 99.5 6.8E-13 1.5E-17 154.5 16.7 120 22-172 290-409 (557)
42 PLN02153 epithiospecifier prot 99.4 1.8E-12 3.9E-17 141.9 15.7 145 23-190 125-289 (341)
43 PHA03098 kelch-like protein; P 99.4 1.9E-12 4.1E-17 150.0 15.7 151 9-190 315-469 (534)
44 PHA02790 Kelch-like protein; P 99.4 3.2E-12 7E-17 146.4 16.6 150 23-189 306-474 (480)
45 KOG4441 Proteins containing BT 99.4 2.5E-12 5.5E-17 149.7 14.9 154 7-190 398-551 (571)
46 TIGR03548 mutarot_permut cycli 99.4 3.9E-12 8.5E-17 138.2 15.2 112 52-190 37-152 (323)
47 PHA03098 kelch-like protein; P 99.4 3.4E-12 7.3E-17 147.9 15.3 142 21-190 375-516 (534)
48 KOG4693 Uncharacterized conser 99.4 2E-12 4.3E-17 132.2 10.8 141 24-190 11-170 (392)
49 KOG1230 Protein containing rep 99.4 2.3E-12 4.9E-17 138.5 10.8 148 17-186 113-276 (521)
50 PHA02713 hypothetical protein; 99.4 6.1E-12 1.3E-16 146.6 14.9 137 21-190 384-538 (557)
51 KOG4152 Host cell transcriptio 99.4 1.4E-12 3E-17 142.5 8.7 158 19-212 75-259 (830)
52 TIGR03547 muta_rot_YjhT mutatr 99.3 3.7E-11 8E-16 131.7 14.9 135 25-184 53-224 (346)
53 TIGR03547 muta_rot_YjhT mutatr 99.3 3.3E-11 7.1E-16 132.1 14.1 120 23-172 5-129 (346)
54 KOG4152 Host cell transcriptio 99.2 2.3E-11 4.9E-16 133.2 10.6 141 19-185 193-363 (830)
55 PHA02790 Kelch-like protein; P 99.2 7.2E-11 1.6E-15 135.4 14.9 121 30-186 265-385 (480)
56 PRK14131 N-acetylneuraminic ac 99.2 1E-10 2.3E-15 130.0 14.4 121 22-172 25-150 (376)
57 PRK14131 N-acetylneuraminic ac 99.2 1.3E-10 2.9E-15 129.1 14.1 132 26-182 75-243 (376)
58 PF00149 Metallophos: Calcineu 99.1 9.6E-10 2.1E-14 103.6 12.3 162 445-652 2-199 (200)
59 COG0639 ApaH Diadenosine tetra 98.8 5.9E-09 1.3E-13 98.2 7.5 147 522-675 2-155 (155)
60 PF13964 Kelch_6: Kelch motif 98.8 1.1E-08 2.4E-13 80.5 6.7 47 79-128 1-47 (50)
61 cd00841 MPP_YfcE Escherichia c 98.7 4.2E-07 9.2E-12 88.0 15.9 59 445-521 1-59 (155)
62 PF12850 Metallophos_2: Calcin 98.7 3E-07 6.5E-12 88.3 13.9 61 444-522 1-61 (156)
63 PF07646 Kelch_2: Kelch motif; 98.6 7E-08 1.5E-12 75.8 6.5 46 79-127 1-48 (49)
64 TIGR00040 yfcE phosphoesterase 98.6 1.2E-06 2.6E-11 85.5 15.2 62 444-520 1-63 (158)
65 PF01344 Kelch_1: Kelch motif; 98.6 5E-08 1.1E-12 75.4 4.0 46 79-127 1-46 (47)
66 PF13418 Kelch_4: Galactose ox 98.6 7.2E-08 1.6E-12 75.4 4.4 46 79-127 1-47 (49)
67 PRK09453 phosphodiesterase; Pr 98.5 1.5E-07 3.3E-12 94.1 7.7 68 444-521 1-76 (182)
68 PLN02772 guanylate kinase 98.5 2.9E-07 6.2E-12 101.8 10.1 85 76-185 21-108 (398)
69 cd07388 MPP_Tt1561 Thermus the 98.5 1E-06 2.2E-11 91.3 12.5 71 444-521 5-75 (224)
70 cd07379 MPP_239FB Homo sapiens 98.5 6.7E-07 1.5E-11 84.9 10.3 118 445-657 1-120 (135)
71 cd07397 MPP_DevT Myxococcus xa 98.4 3.6E-06 7.7E-11 87.8 13.4 113 445-576 2-160 (238)
72 PF13854 Kelch_5: Kelch motif 98.3 1.4E-06 3.1E-11 66.3 5.7 40 76-118 1-41 (42)
73 PF13415 Kelch_3: Galactose ox 98.3 2E-06 4.3E-11 67.5 6.5 42 89-134 1-43 (49)
74 cd00838 MPP_superfamily metall 98.3 6.9E-06 1.5E-10 75.0 11.2 117 447-657 1-119 (131)
75 COG3055 Uncharacterized protei 98.2 4.2E-06 9E-11 90.0 9.1 110 36-173 46-158 (381)
76 PF13854 Kelch_5: Kelch motif 98.1 3.1E-06 6.8E-11 64.4 3.8 36 151-186 4-41 (42)
77 cd07394 MPP_Vps29 Homo sapiens 98.1 0.00016 3.6E-09 72.4 17.1 58 445-520 1-64 (178)
78 cd07392 MPP_PAE1087 Pyrobaculu 98.0 0.00012 2.6E-09 72.5 14.8 65 446-522 1-66 (188)
79 smart00612 Kelch Kelch domain. 97.9 1.5E-05 3.3E-10 60.6 5.0 47 91-162 1-47 (47)
80 PF07646 Kelch_2: Kelch motif; 97.9 1.1E-05 2.4E-10 63.3 3.7 41 151-191 1-44 (49)
81 PF13964 Kelch_6: Kelch motif 97.8 1.6E-05 3.5E-10 62.4 3.5 40 151-190 1-41 (50)
82 cd07403 MPP_TTHA0053 Thermus t 97.8 0.00028 6E-09 66.9 11.5 56 447-519 1-56 (129)
83 PF01344 Kelch_1: Kelch motif; 97.7 2.4E-05 5.2E-10 60.3 3.3 39 151-189 1-40 (47)
84 PRK05340 UDP-2,3-diacylglucosa 97.7 9.1E-05 2E-09 77.5 8.2 70 444-521 1-83 (241)
85 KOG2437 Muskelin [Signal trans 97.7 4.2E-05 9.1E-10 85.0 5.6 147 21-185 256-412 (723)
86 TIGR01854 lipid_A_lpxH UDP-2,3 97.6 0.00039 8.5E-09 72.3 10.5 206 446-689 1-229 (231)
87 cd07400 MPP_YydB Bacillus subt 97.5 0.0015 3.2E-08 62.3 13.0 29 629-657 101-129 (144)
88 cd07404 MPP_MS158 Microscilla 97.5 7.7E-05 1.7E-09 73.2 3.9 67 446-521 1-68 (166)
89 PRK11340 phosphodiesterase Yae 97.5 0.00023 5E-09 75.9 7.6 69 444-520 50-124 (271)
90 cd07385 MPP_YkuE_C Bacillus su 97.5 0.00022 4.7E-09 73.1 6.6 70 444-521 2-76 (223)
91 PF13418 Kelch_4: Galactose ox 97.4 7.9E-05 1.7E-09 58.1 2.5 40 151-190 1-42 (49)
92 cd07399 MPP_YvnB Bacillus subt 97.4 0.012 2.5E-07 60.7 19.0 71 628-699 135-213 (214)
93 PF13415 Kelch_3: Galactose ox 97.4 0.00028 6.2E-09 55.2 5.3 37 48-88 13-49 (49)
94 PF03089 RAG2: Recombination a 97.4 0.0013 2.8E-08 69.2 11.4 142 9-171 4-174 (337)
95 KOG0376 Serine-threonine phosp 97.4 3.5E-05 7.5E-10 86.1 -0.5 243 416-675 14-299 (476)
96 COG0622 Predicted phosphoester 97.3 0.012 2.7E-07 58.6 16.3 64 444-521 2-65 (172)
97 cd07391 MPP_PF1019 Pyrococcus 97.2 0.001 2.2E-08 66.1 7.8 43 479-521 44-88 (172)
98 PLN02772 guanylate kinase 97.2 0.0015 3.2E-08 72.8 9.5 88 21-119 20-110 (398)
99 TIGR03729 acc_ester putative p 97.1 0.001 2.2E-08 69.5 7.3 68 445-521 1-74 (239)
100 cd07395 MPP_CSTP1 Homo sapiens 97.0 0.04 8.7E-07 58.1 18.4 28 630-657 195-222 (262)
101 cd07390 MPP_AQ1575 Aquifex aeo 97.0 0.0021 4.5E-08 63.6 8.0 39 479-522 45-83 (168)
102 cd00840 MPP_Mre11_N Mre11 nucl 96.9 0.0016 3.6E-08 66.2 6.6 73 445-523 1-91 (223)
103 cd07396 MPP_Nbla03831 Homo sap 96.9 0.0029 6.2E-08 67.3 8.0 73 445-523 2-88 (267)
104 PHA02546 47 endonuclease subun 96.8 0.0029 6.3E-08 69.8 7.2 72 444-521 1-89 (340)
105 cd00844 MPP_Dbr1_N Dbr1 RNA la 96.7 0.0034 7.3E-08 66.8 7.0 70 446-521 1-86 (262)
106 PRK04036 DNA polymerase II sma 96.6 0.0062 1.3E-07 70.7 9.1 78 443-522 243-344 (504)
107 COG1409 Icc Predicted phosphoh 96.6 0.065 1.4E-06 56.5 16.2 73 445-525 2-82 (301)
108 cd07402 MPP_GpdQ Enterobacter 96.6 0.0062 1.3E-07 63.0 8.1 69 445-521 1-83 (240)
109 TIGR00619 sbcd exonuclease Sbc 96.5 0.005 1.1E-07 65.2 6.9 72 444-521 1-88 (253)
110 cd07398 MPP_YbbF-LpxH Escheric 96.5 0.0048 1E-07 62.8 6.5 27 628-654 176-202 (217)
111 PRK10966 exonuclease subunit S 96.3 0.0077 1.7E-07 68.1 7.1 72 444-522 1-88 (407)
112 PRK11148 cyclic 3',5'-adenosin 96.2 0.011 2.4E-07 63.1 7.5 70 444-521 15-98 (275)
113 cd08165 MPP_MPPE1 human MPPE1 96.2 0.0067 1.4E-07 59.4 5.2 43 479-521 41-89 (156)
114 TIGR00024 SbcD_rel_arch putati 96.2 0.013 2.9E-07 61.0 7.5 69 444-522 15-103 (225)
115 cd07383 MPP_Dcr2 Saccharomyces 96.1 0.018 4E-07 58.2 7.8 41 479-519 44-87 (199)
116 cd00839 MPP_PAPs purple acid p 96.0 0.032 7E-07 59.6 9.9 37 629-665 181-217 (294)
117 cd07393 MPP_DR1119 Deinococcus 96.0 0.016 3.5E-07 60.4 7.2 45 629-675 181-228 (232)
118 cd08163 MPP_Cdc1 Saccharomyces 95.9 0.23 4.9E-06 52.8 15.6 36 616-651 188-226 (257)
119 cd07386 MPP_DNA_pol_II_small_a 95.9 0.027 5.9E-07 59.0 8.6 72 447-522 2-95 (243)
120 COG3055 Uncharacterized protei 95.9 0.031 6.8E-07 60.8 8.7 139 22-183 78-251 (381)
121 COG2129 Predicted phosphoester 95.8 0.96 2.1E-05 46.8 18.8 206 443-689 3-217 (226)
122 KOG2437 Muskelin [Signal trans 95.8 0.0063 1.4E-07 68.2 3.2 121 52-185 344-471 (723)
123 KOG0918 Selenium-binding prote 95.8 0.00077 1.7E-08 73.6 -3.9 209 477-699 48-262 (476)
124 TIGR00583 mre11 DNA repair pro 95.6 0.03 6.6E-07 63.2 7.9 73 444-522 4-124 (405)
125 cd07384 MPP_Cdc1_like Saccharo 95.6 0.041 8.9E-07 54.8 7.8 43 479-521 48-100 (171)
126 cd07401 MPP_TMEM62_N Homo sapi 95.3 0.04 8.7E-07 58.3 6.9 28 633-660 190-217 (256)
127 cd08166 MPP_Cdc1_like_1 unchar 95.0 0.043 9.4E-07 55.8 6.1 43 479-521 45-93 (195)
128 COG2908 Uncharacterized protei 95.0 0.085 1.8E-06 54.9 8.1 196 448-691 2-229 (237)
129 cd08164 MPP_Ted1 Saccharomyces 94.9 0.063 1.4E-06 54.6 6.8 65 451-520 24-110 (193)
130 smart00612 Kelch Kelch domain. 94.8 0.079 1.7E-06 39.8 5.5 37 50-90 11-47 (47)
131 cd07380 MPP_CWF19_N Schizosacc 94.2 0.12 2.5E-06 50.6 6.6 68 447-519 1-68 (150)
132 COG0420 SbcD DNA repair exonuc 93.8 0.13 2.9E-06 57.6 7.1 73 444-522 1-89 (390)
133 cd00845 MPP_UshA_N_like Escher 93.7 0.13 2.8E-06 53.9 6.4 66 445-520 2-81 (252)
134 COG1408 Predicted phosphohydro 93.6 0.16 3.4E-06 54.9 6.8 71 444-522 45-119 (284)
135 COG1407 Predicted ICC-like pho 93.4 0.26 5.7E-06 51.4 7.9 71 443-522 19-111 (235)
136 COG4186 Predicted phosphoester 92.6 0.34 7.4E-06 47.3 6.7 40 479-522 48-87 (186)
137 cd07410 MPP_CpdB_N Escherichia 90.7 0.43 9.2E-06 51.0 5.8 21 632-652 208-229 (277)
138 PF14582 Metallophos_3: Metall 90.2 0.36 7.8E-06 50.0 4.5 73 444-522 6-103 (255)
139 PLN02533 probable purple acid 89.2 0.54 1.2E-05 53.7 5.5 25 630-654 311-335 (427)
140 KOG3662 Cell division control 88.8 0.8 1.7E-05 51.5 6.3 57 459-520 81-143 (410)
141 COG1311 HYS2 Archaeal DNA poly 87.2 4.1 8.9E-05 46.6 10.6 191 444-675 226-451 (481)
142 cd07378 MPP_ACP5 Homo sapiens 85.6 1.7 3.8E-05 45.9 6.5 24 630-653 190-213 (277)
143 cd07412 MPP_YhcR_N Bacillus su 84.3 1.5 3.2E-05 47.3 5.3 66 445-520 2-87 (288)
144 PF06874 FBPase_2: Firmicute f 83.8 1.1 2.3E-05 52.7 4.0 69 629-699 507-585 (640)
145 cd07408 MPP_SA0022_N Staphyloc 83.7 2.1 4.5E-05 45.3 6.0 65 445-520 2-81 (257)
146 cd07387 MPP_PolD2_C PolD2 (DNA 82.3 33 0.00071 36.7 14.2 47 644-695 206-255 (257)
147 cd07411 MPP_SoxB_N Thermus the 81.7 3 6.5E-05 44.3 6.3 35 480-520 55-94 (264)
148 PRK09419 bifunctional 2',3'-cy 74.6 5 0.00011 51.7 6.3 66 445-520 662-735 (1163)
149 cd00842 MPP_ASMase acid sphing 72.9 6.6 0.00014 42.1 5.9 45 479-523 71-124 (296)
150 cd07409 MPP_CD73_N CD73 ecto-5 71.1 10 0.00022 40.7 6.8 66 445-520 2-93 (281)
151 PF07250 Glyoxal_oxid_N: Glyox 70.4 8.1 0.00018 40.9 5.6 58 88-171 76-138 (243)
152 KOG2863 RNA lariat debranching 69.9 11 0.00024 41.7 6.5 50 627-676 204-254 (456)
153 PF08321 PPP5: PPP5 TPR repeat 69.4 9.3 0.0002 34.5 5.0 42 391-442 54-95 (95)
154 COG1768 Predicted phosphohydro 65.9 13 0.00027 37.6 5.5 40 479-522 46-87 (230)
155 PF04042 DNA_pol_E_B: DNA poly 63.1 10 0.00022 38.5 4.6 72 446-523 1-93 (209)
156 KOG3325 Membrane coat complex 62.0 29 0.00063 33.9 7.0 102 446-591 3-107 (183)
157 PF07250 Glyoxal_oxid_N: Glyox 61.6 55 0.0012 34.7 9.7 32 68-99 106-138 (243)
158 cd07406 MPP_CG11883_N Drosophi 60.6 18 0.00039 38.3 6.1 57 454-520 21-82 (257)
159 TIGR00282 metallophosphoestera 57.9 24 0.00053 37.8 6.5 68 444-521 1-71 (266)
160 COG3855 Fbp Uncharacterized pr 54.9 8.9 0.00019 43.5 2.6 40 479-523 193-232 (648)
161 KOG1432 Predicted DNA repair e 53.2 32 0.0007 38.0 6.4 44 479-522 103-148 (379)
162 KOG2476 Uncharacterized conser 51.8 33 0.00072 39.2 6.4 71 443-518 5-75 (528)
163 COG0737 UshA 5'-nucleotidase/2 51.1 23 0.0005 41.4 5.5 71 443-520 26-114 (517)
164 cd07407 MPP_YHR202W_N Saccharo 48.4 28 0.0006 37.6 5.1 69 445-520 7-96 (282)
165 cd07405 MPP_UshA_N Escherichia 47.5 28 0.0006 37.5 5.0 69 446-520 3-86 (285)
166 PTZ00235 DNA polymerase epsilo 43.4 73 0.0016 34.6 7.3 76 444-521 28-122 (291)
167 PRK09419 bifunctional 2',3'-cy 43.2 34 0.00074 44.3 5.6 23 630-652 256-279 (1163)
168 PRK09420 cpdB bifunctional 2', 42.0 40 0.00088 40.8 5.7 69 442-520 24-121 (649)
169 TIGR01390 CycNucDiestase 2',3' 41.3 38 0.00083 40.8 5.3 66 445-520 4-98 (626)
170 cd08162 MPP_PhoA_N Synechococc 40.8 48 0.001 36.3 5.6 69 446-520 3-90 (313)
171 TIGR03075 PQQ_enz_alc_DH PQQ-d 39.5 3.8E+02 0.0081 31.7 13.1 77 28-123 61-146 (527)
172 PF07893 DUF1668: Protein of u 37.5 75 0.0016 35.2 6.6 53 63-125 154-215 (342)
173 cd07382 MPP_DR1281 Deinococcus 36.4 91 0.002 33.2 6.7 66 445-520 1-69 (255)
174 PF12768 Rax2: Cortical protei 34.9 5.1E+02 0.011 28.1 12.1 40 84-126 41-81 (281)
175 TIGR01640 F_box_assoc_1 F-box 31.8 2.2E+02 0.0048 29.0 8.6 96 64-184 79-175 (230)
176 TIGR01530 nadN NAD pyrophospha 31.5 1E+02 0.0022 36.6 6.7 37 479-520 52-93 (550)
177 PRK11907 bifunctional 2',3'-cy 31.0 77 0.0017 39.4 5.7 68 443-520 115-212 (814)
178 TIGR01640 F_box_assoc_1 F-box 29.9 4.4E+02 0.0096 26.8 10.5 58 110-187 71-128 (230)
179 PRK11138 outer membrane biogen 28.3 4.8E+02 0.01 29.0 11.2 74 31-123 64-146 (394)
180 PF13570 PQQ_3: PQQ-like domai 26.5 1.3E+02 0.0027 22.0 4.2 28 81-118 13-40 (40)
181 KOG1378 Purple acid phosphatas 26.2 75 0.0016 36.6 4.1 63 445-519 149-219 (452)
182 PF06874 FBPase_2: Firmicute f 25.5 1E+02 0.0022 36.9 5.1 41 479-524 187-227 (640)
183 KOG3339 Predicted glycosyltran 23.7 2.8E+02 0.006 28.4 7.0 91 478-573 40-143 (211)
184 KOG3947 Phosphoesterases [Gene 23.6 1.1E+02 0.0023 33.1 4.4 62 444-521 62-126 (305)
185 PF07893 DUF1668: Protein of u 23.4 3.4E+02 0.0074 30.1 8.7 57 84-171 71-127 (342)
186 TIGR00282 metallophosphoestera 23.1 57 0.0012 35.0 2.4 39 479-521 2-41 (266)
187 PF12768 Rax2: Cortical protei 23.1 1.7E+02 0.0037 31.7 6.0 57 111-189 18-76 (281)
188 PF09637 Med18: Med18 protein; 23.0 94 0.002 32.9 4.0 41 629-672 139-179 (250)
189 KOG2310 DNA repair exonuclease 22.8 2.3E+02 0.005 33.4 7.1 52 444-501 14-77 (646)
190 PRK05583 ribosomal protein L7A 22.3 77 0.0017 29.1 2.7 69 621-690 13-90 (104)
191 TIGR03300 assembly_YfgL outer 21.7 7E+02 0.015 27.3 10.8 70 31-123 60-131 (377)
192 PF08268 FBA_3: F-box associat 21.0 4E+02 0.0086 24.7 7.4 76 86-184 2-78 (129)
193 PF03089 RAG2: Recombination a 20.7 2.5E+02 0.0055 30.6 6.4 20 151-170 87-110 (337)
194 PRK09558 ushA bifunctional UDP 20.7 1.4E+02 0.0029 35.4 5.1 72 443-520 34-120 (551)
No 1
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-77 Score=595.44 Aligned_cols=286 Identities=41% Similarity=0.733 Sum_probs=272.1
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCceEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 004569 394 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAG 473 (744)
Q Consensus 394 ~~~~i~~ll~~~~~~~~~~~~~~l~~~~i~~L~~~a~~il~~ep~ll~l~~pi~VvGDIHG~~~dL~~il~~~g~p~~~~ 473 (744)
.++.|+.|.+.+ .+.+.++..||.++++||.+|++|++++.|++|||||||||+||+.+|+..|.++..
T Consensus 3 ldr~ie~L~~~~----------li~E~eV~~LC~~~~eiL~~E~NV~~i~tPvtvcGDIHGQf~Dllelf~igG~~~~t- 71 (303)
T KOG0372|consen 3 LDRQIEQLRRCE----------LIAESEVKALCAKVREILVEESNVQRIDTPVTVCGDIHGQFYDLLELFRIGGDVPET- 71 (303)
T ss_pred HHHHHHHHHhcC----------CCcHHHHHHHHHHHHHHHhcCCCceecCCCcEEeecccchHHHHHHHHHhCCCCCCC-
Confidence 568888888753 678999999999999999999999999999999999999999999999999988876
Q ss_pred CcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccccchhhhcCChHHHHHHhCcccchhhhhhhhhHh
Q 004569 474 DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLF 553 (744)
Q Consensus 474 ~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~l~~~~gf~~E~~~~~g~~~~~~~~~~~~~~f 553 (744)
+|+|||||||||.+|+|++.||++||++||++|++||||||++.++..|||++||.+|||. ..+|+.+.++|
T Consensus 72 -----~YLFLGDyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRqitqvYGFY~EclrKYG~---~~vWr~c~eiF 143 (303)
T KOG0372|consen 72 -----NYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGS---ANVWRYCTEIF 143 (303)
T ss_pred -----ceEeecchhccccchHHHHHHHHHHhhcCcceeEEeeccchhhhhhhhhhHHHHHHHHcCC---hHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999996 48999999999
Q ss_pred hccceeeEEeCcEEEecCCCCCCCCChhhhhhccCCccccCCcceeeeccccCCCCCCCCCCcccCCCCCCceeeCHHHH
Q 004569 554 NWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRV 633 (744)
Q Consensus 554 ~~LPlaa~i~~~il~vHGGi~~~~~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~Fg~~~v 633 (744)
++||++|+|+++|||||||++|++.++++|+.+.|..+++.++ .++|||||||.+. .||..++||+| +.||.+++
T Consensus 144 dyL~l~aiid~kifCVHGGlSP~i~~lDqIr~lDR~~Eiph~g-~m~DllWSDPee~---~g~~~SPRGaG-ylFG~dvv 218 (303)
T KOG0372|consen 144 DYLSLAAIIDGKIFCVHGGLSPSIQTLDQIRVLDRKQEVPHDG-AMCDLLWSDPEEG---PGWGLSPRGAG-YLFGEDVV 218 (303)
T ss_pred HhhhHhheecCcEEEEcCCCCcchhhHHHHHHhhccccCCCCC-cchheeccCcccC---CCcccCCCCcc-ccccHHHH
Confidence 9999999999999999999999999999999999999998776 8999999999873 59999999999 68999999
Q ss_pred HHHHHHcCCeEEEEcccccccceEEecCCeEEEEeccCCCCCCCCCeEEEEEEcCCceEEEEEecCCCCC
Q 004569 634 MEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPA 703 (744)
Q Consensus 634 ~~fL~~n~l~~IIRgHe~v~~G~~~~~~~~liTVFSa~nY~~~~~N~gavl~i~~~~~~~~~~~~~~~~~ 703 (744)
++||+.||+++|+|+||.|++||++.++++|+|||||||||+..+|.||||.|++++.-.+++|...+..
T Consensus 219 ~~F~~~N~~~~I~RaHQLv~eGyk~~F~~~v~TVWSAPNYCYrCGN~AsIl~lde~~~~~F~vFeaa~~~ 288 (303)
T KOG0372|consen 219 ESFLEANGLSLICRAHQLVMEGYKWHFDEKVVTVWSAPNYCYRCGNVAAILELDEDLDKDFRVFEAAPQE 288 (303)
T ss_pred HHHHHhCChHHHHHHHHHHHhhHHHhcCCceEEEecCCchhhhcCChHHheeeccccCcceEeeecchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999876543
No 2
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.8e-73 Score=610.14 Aligned_cols=321 Identities=47% Similarity=0.805 Sum_probs=285.5
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCceEEEecCCCCHHHHHHHHHHhC-CCCCC
Q 004569 394 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYG-SPSTA 472 (744)
Q Consensus 394 ~~~~i~~ll~~~~~~~~~~~~~~l~~~~i~~L~~~a~~il~~ep~ll~l~~pi~VvGDIHG~~~dL~~il~~~g-~p~~~ 472 (744)
++++|..++.......+..+...|+.+||.+||..+.++|..+|+++++++||+|||||||||.||+++|+..| +|+..
T Consensus 9 ~~~~i~~~~~~~~~~~~~~~~~~l~~~ei~~l~~~~~~if~~~~~l~e~~aPV~i~GDiHGq~~DLlrlf~~~g~~pp~~ 88 (331)
T KOG0374|consen 9 LDELIRKLLSVGNKKTEKKRQVPLSKSEIIKLCDKAREIFLSQPTLLELSAPVKIVGDIHGQFGDLLRLFDLLGSFPPDQ 88 (331)
T ss_pred HHHHHHHHhhccccCCCcccceeccHHHHHHHHHHHHHHhcCCCceeecCCCEEEEccCcCCHHHHHHHHHhcCCCCCcc
Confidence 45667777765443344444556999999999999999999999999999999999999999999999999999 88766
Q ss_pred CCcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccccchhhhcCChHHHHHHhCcccchhhhhhhhhH
Q 004569 473 GDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRL 552 (744)
Q Consensus 473 ~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~l~~~~gf~~E~~~~~g~~~~~~~~~~~~~~ 552 (744)
+|||||||||||++|+|++.+|+++|++||++||+||||||++.+|+.|||++||.+||+. ..+|..|+..
T Consensus 89 ------~ylFLGDYVDRG~~slE~i~LL~a~Ki~yp~~~~lLRGNHE~~~in~~yGFydE~~rr~~~---~~~w~~F~~~ 159 (331)
T KOG0374|consen 89 ------NYVFLGDYVDRGKQSLETICLLFALKIKYPENVFLLRGNHECASINRIYGFYDECKRRYGE---IKLWKAFNDA 159 (331)
T ss_pred ------cEEEecccccCCccceEEeehhhhhhhhCCceEEEeccccccccccceeeeHHHHHHhcch---HHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999975 4799999999
Q ss_pred hhccceeeEEeCcEEEecCCCCCCCCChhhhhhccCCccccCCcceeeeccccCCCCCCCCCCcccCCCCCCceeeCHHH
Q 004569 553 FNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDR 632 (744)
Q Consensus 553 f~~LPlaa~i~~~il~vHGGi~~~~~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~Fg~~~ 632 (744)
|++||++|+|+++|+|+|||++|.+.++++|++|.||.+.++.+ +++|||||||+. ...||.+|.||.+ +.||+++
T Consensus 160 f~~mp~~a~i~~kI~CmhGGlsp~l~~~~~i~~i~rp~~~~~~g-ll~DLlWsdp~~--~~~g~~~n~Rg~s-~~fg~~~ 235 (331)
T KOG0374|consen 160 FNCLPLAALIDGKILCMHGGLSPHLKSLDQIRAIPRPTDSPDKG-LLCDLLWSDPDD--DVPGWEENDRGVS-FTFGPAV 235 (331)
T ss_pred HhhCchhheecceEEEecCCCChhhcChHHHhhccCCcCCCccc-eeeeeeecCCCC--CCCCcccCCCcee-eEecHHH
Confidence 99999999999999999999999999999999999998877655 999999999986 4789999999999 7999999
Q ss_pred HHHHHHHcCCeEEEEcccccccceEEecCCeEEEEeccCCCCCCCCCeEEEEEEcCCceEEEEEecCCCCCCCCCCCCCc
Q 004569 633 VMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAISSPETSPE 712 (744)
Q Consensus 633 v~~fL~~n~l~~IIRgHe~v~~G~~~~~~~~liTVFSa~nY~~~~~N~gavl~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (744)
+++||+++++++||||||+|+||||+|++++++||||||+|||.++|+||+|.|++++.+++++++|.+.. ...
T Consensus 236 v~~f~~~~~ldlivRaHqvv~dGyeffa~r~lvTIFSAP~Ycg~~~n~gavm~Vd~~l~~sf~~l~p~~~~------~~~ 309 (331)
T KOG0374|consen 236 VEDFCKKLDLDLIVRAHQVVEDGYEFFAGRKLVTIFSAPNYCGEFDNAGAVMRVDKNLKCSFVILRPEGGI------DKD 309 (331)
T ss_pred HHHHHHHhCcceEEEcCccccccceEecCceEEEEecCchhccccCCceEEEEECCCCeEEEEEecccccc------ccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999995311 001
Q ss_pred ccchhhHHHHhhcCCCCCCCC
Q 004569 713 RHIEDTWMQELNANRPPTPTR 733 (744)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~p~r 733 (744)
......|..+.+..++.++++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~ 330 (331)
T KOG0374|consen 310 KIEALGVGSDKKAILSTSKLS 330 (331)
T ss_pred cccccccccccccccccccCC
Confidence 112233444455556666554
No 3
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=100.00 E-value=3.2e-69 Score=577.01 Aligned_cols=294 Identities=46% Similarity=0.830 Sum_probs=274.7
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCceEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 004569 394 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAG 473 (744)
Q Consensus 394 ~~~~i~~ll~~~~~~~~~~~~~~l~~~~i~~L~~~a~~il~~ep~ll~l~~pi~VvGDIHG~~~dL~~il~~~g~p~~~~ 473 (744)
++++|+.+++.+.+++. ....|++++|.+||++|+++|++||++++++.|++||||||||+.+|.++|+..++++.+
T Consensus 11 ~~~~i~~~~~~~~~~~~--~~~~l~~~~i~~l~~~~~~il~~ep~ll~i~~~i~vvGDIHG~~~dL~~l~~~~g~~~~~- 87 (320)
T PTZ00480 11 VDNIIERLLSVRGSKPG--KNVNLTEAEVRGLCIKARDIFISQPILLELEAPLKICGDVHGQYFDLLRLFEYGGYPPES- 87 (320)
T ss_pred HHHHHHHHHhccccCcc--ccCCCCHHHHHHHHHHHHHHHHhCCceEecCCCeEEEeecccCHHHHHHHHHhcCCCCcc-
Confidence 78899999987765542 234689999999999999999999999999999999999999999999999999998765
Q ss_pred CcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccccchhhhcCChHHHHHHhCcccchhhhhhhhhHh
Q 004569 474 DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLF 553 (744)
Q Consensus 474 ~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~l~~~~gf~~E~~~~~g~~~~~~~~~~~~~~f 553 (744)
+|||||||||||++++||+.+|+++|+.+|.+|++||||||...++..|||+.||..+|+ ..+|..++++|
T Consensus 88 -----~ylfLGDyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~~~~~~~ygF~~e~~~~y~----~~l~~~~~~~F 158 (320)
T PTZ00480 88 -----NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYT----IKLWKTFTDCF 158 (320)
T ss_pred -----eEEEeceecCCCCCcHHHHHHHHHhcccCCCceEEEecccchhhhhhhcchHHHHHhhcC----HHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999985 46999999999
Q ss_pred hccceeeEEeCcEEEecCCCCCCCCChhhhhhccCCccccCCcceeeeccccCCCCCCCCCCcccCCCCCCceeeCHHHH
Q 004569 554 NWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRV 633 (744)
Q Consensus 554 ~~LPlaa~i~~~il~vHGGi~~~~~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~Fg~~~v 633 (744)
++||++|+|++++|||||||+|.+.++++|+.++||.+.+.. .+++|+|||||.. ...+|.+|+||.| +.||++++
T Consensus 159 ~~LPlaAiI~~~i~cvHGGI~p~~~~l~~i~~i~rp~~~~~~-~~~~dllWSDP~~--~~~~~~~s~RG~g-~~FG~~~~ 234 (320)
T PTZ00480 159 NCLPVAALIDEKILCMHGGLSPELSNLEQIRRIMRPTDVPDT-GLLCDLLWSDPDK--DVQGWADNERGVS-YVFSQEIV 234 (320)
T ss_pred HhccHhheecCcEEEEcCCcCcccCCHHHHhcccCCCCCCcc-chhhheeecCccc--ccCCCccCCCCCc-cccCHHHH
Confidence 999999999999999999999999999999999999987654 4899999999985 3578999999999 68999999
Q ss_pred HHHHHHcCCeEEEEcccccccceEEecCCeEEEEeccCCCCCCCCCeEEEEEEcCCceEEEEEecCCCCC
Q 004569 634 MEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPA 703 (744)
Q Consensus 634 ~~fL~~n~l~~IIRgHe~v~~G~~~~~~~~liTVFSa~nY~~~~~N~gavl~i~~~~~~~~~~~~~~~~~ 703 (744)
++||++|++++||||||++++||+++++++|||||||||||+..+|+||+|.|++++.+.++.|.|.+..
T Consensus 235 ~~Fl~~n~l~~IiR~Hq~v~~G~~~~~~~~~iTvFSa~~Y~~~~~N~ga~l~i~~~~~~~~~~~~p~~~~ 304 (320)
T PTZ00480 235 QVFLKKHELDLICRAHQVVEDGYEFFSKRQLVTLFSAPNYCGEFDNAGSMMTIDESLMCSFQILKPAEQG 304 (320)
T ss_pred HHHHHhCCCcEEEEcCccccCceEEeCCCcEEEEeCCcccCCCCCccEEEEEECCCCcEeEEEecCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999876554
No 4
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=100.00 E-value=1.2e-68 Score=573.52 Aligned_cols=285 Identities=33% Similarity=0.605 Sum_probs=255.5
Q ss_pred hHHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecC----ceEEEecCCCCHHHHHHHHHHhCC
Q 004569 393 VPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKA----PIKIFGDLHGQFGDLMRLFDEYGS 468 (744)
Q Consensus 393 ~~~~~i~~ll~~~~~~~~~~~~~~l~~~~i~~L~~~a~~il~~ep~ll~l~~----pi~VvGDIHG~~~dL~~il~~~g~ 468 (744)
.++++|+.+++.. .|+++++.+||++|+++|++||+|+++.. |++|||||||||.+|+++|+..|+
T Consensus 6 ~~~~~i~~~~~~~----------~l~~~~i~~L~~~a~~il~~ep~vl~i~~~~~~~~~vvGDiHG~~~dL~~il~~~g~ 75 (321)
T cd07420 6 HIDALIEAFKEKQ----------LLHAKYVLLILREARKVLKQLPNISRVSTSISKQVTICGDLHGKLDDLFLIFYKNGL 75 (321)
T ss_pred HHHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCEEEecCCCCCCeEEEEeCCCCHHHHHHHHHHcCC
Confidence 3678889888642 47889999999999999999999999986 899999999999999999999998
Q ss_pred CCCCCCcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccccchhhhcCChHHHHHHhCcccchhhhhh
Q 004569 469 PSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHR 548 (744)
Q Consensus 469 p~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~l~~~~gf~~E~~~~~g~~~~~~~~~~ 548 (744)
|+... +|||||||||||++|+||+.+|++||+.||++|++||||||.+.++..|||++||..+|+.. +..+|..
T Consensus 76 ~~~~~-----~~lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~~~~~~yGf~~e~~~~y~~~-~~~l~~~ 149 (321)
T cd07420 76 PSPEN-----PYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIMNLRYGFTKEVMSKYKLH-GKKILRL 149 (321)
T ss_pred CCccc-----eEEEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhhhhhhhcChHHHHHHHhCcc-HHHHHHH
Confidence 86532 79999999999999999999999999999999999999999999999999999999999863 5679999
Q ss_pred hhhHhhccceeeEEeCcEEEecCCCCCCCCChhhhhhccCCccc-----cC---------------------Ccceeeec
Q 004569 549 INRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITM-----EA---------------------GSIVLMDL 602 (744)
Q Consensus 549 ~~~~f~~LPlaa~i~~~il~vHGGi~~~~~~l~~I~~i~Rp~~~-----~~---------------------~~~~~~dl 602 (744)
++++|++||++|+|++++|||||||++ ..++++|+.++|+... +. ...++.|+
T Consensus 150 ~~~~F~~LPlaaii~~~i~cvHGGi~~-~~~l~~i~~i~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 228 (321)
T cd07420 150 LEDVFSWLPLATIIDNKILVVHGGISD-STDLDLLDKIDRHKYVSVLRPPLRKGMEELTGEEEDPSEPLDKTEWRQILDI 228 (321)
T ss_pred HHHHHHhCCceEEEcCCEEEEeCCCCC-ccCHHHHHhhhccccccccCCCccccccccccccccccccccccccchhhee
Confidence 999999999999999999999999997 5789999999884210 11 01367899
Q ss_pred cccCCCCCCCCCCcccCCCCCCceeeCHHHHHHHHHHcCCeEEEEcccccccceEEecCCeEEEEeccCCCCCCCCCeEE
Q 004569 603 LWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGA 682 (744)
Q Consensus 603 LWsDP~~~~~~~g~~~n~Rg~g~~~Fg~~~v~~fL~~n~l~~IIRgHe~v~~G~~~~~~~~liTVFSa~nY~~~~~N~ga 682 (744)
|||||.+. ...|.+++||.| +.||++++++||++|++++||||||++++||+++++++|||||||||||+..+|+||
T Consensus 229 LWSDP~~~--~~~~~~~~RG~g-~~FG~~~~~~Fl~~n~l~~IIR~He~v~~G~~~~~~~~~iTvFSa~nY~~~~~N~ga 305 (321)
T cd07420 229 LWSDPKAQ--KGCKPNTFRGGG-CYFGPDVTSKVLQKHGLSLLIRSHECKPEGYEFCHNNKVITIFSASNYYEEGSNRGA 305 (321)
T ss_pred eecCCccC--CCCCccCCCCCc-cccCHHHHHHHHHHCCCcEEEEcChhhhcceEEecCCeEEEEecCCccCCCCCccEE
Confidence 99999853 233556689999 689999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCceEEEEEe
Q 004569 683 ILVLGRDLVVVPKLI 697 (744)
Q Consensus 683 vl~i~~~~~~~~~~~ 697 (744)
+|.|++++.+.+..+
T Consensus 306 vl~i~~~~~~~f~~~ 320 (321)
T cd07420 306 YIKLGPDLTPHFVQY 320 (321)
T ss_pred EEEECCCCceeEEEe
Confidence 999999998877665
No 5
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=100.00 E-value=1.6e-68 Score=574.35 Aligned_cols=303 Identities=79% Similarity=1.341 Sum_probs=279.0
Q ss_pred HHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCceEEEecCCCCHHHHHHHHHHhCCCCCC--CC
Q 004569 397 VIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTA--GD 474 (744)
Q Consensus 397 ~i~~ll~~~~~~~~~~~~~~l~~~~i~~L~~~a~~il~~ep~ll~l~~pi~VvGDIHG~~~dL~~il~~~g~p~~~--~~ 474 (744)
+|.++++|+.|+++..+.+.|+++++.+||++|+++|++||++++++.|++|||||||||.+|.++|+.+++++.. ++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~il~~e~~~~~i~~~~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~ 80 (311)
T cd07419 1 IITHLLKPRIWKPPTDRRFFFNWNEILELCDAAEDIFKQEPMVLRLRAPIKIFGDIHGQFGDLMRLFDEYGSPVTEAAGD 80 (311)
T ss_pred ChHHhcCcccccCccccccCCCHHHHHHHHHHHHHHHHhCCCeEeeCCCEEEEEeccCCHHHHHHHHHHcCCCcccccCC
Confidence 4788999999999888889999999999999999999999999999999999999999999999999999988641 12
Q ss_pred cceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccccchhhhcCChHHHHHHhCcc--cchhhhhhhhhH
Q 004569 475 IAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGER--DGIWAWHRINRL 552 (744)
Q Consensus 475 ~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~l~~~~gf~~E~~~~~g~~--~~~~~~~~~~~~ 552 (744)
....+|||||||||||++|+||+.+|++||+.+|.+|++||||||.+.++..|||..||..+|+.. .+..+|..++++
T Consensus 81 ~~~~~~vfLGDyVDRGp~s~evl~ll~~lk~~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~~~~~~~~~~~l~~~~~~~ 160 (311)
T cd07419 81 IEYIDYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREECKERLGEDPNDGDSVWRRINRL 160 (311)
T ss_pred CcCceEEEECCccCCCCChHHHHHHHHHhhhcCCCcEEEeccccchHHHHHHhcccHHHHHhcCccchhhHHHHHHHHHH
Confidence 112379999999999999999999999999999999999999999999999999999999999862 345799999999
Q ss_pred hhccceeeEEeCcEEEecCCCCCCCCChhhhhhccCCccccCCcceeeeccccCCCCCCCCCCcccCC---CCCCc-eee
Q 004569 553 FNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNA---RGPGL-VTF 628 (744)
Q Consensus 553 f~~LPlaa~i~~~il~vHGGi~~~~~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~~g~~~n~---Rg~g~-~~F 628 (744)
|++||++++++++++||||||+|.+.++++|+.+.||...+....+++|+|||||...+...++.+++ ||.|. +.|
T Consensus 161 f~~LPl~avi~~~~l~vHgGi~p~~~~l~~i~~i~r~~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~rg~g~~~~f 240 (311)
T cd07419 161 FEWLPLAAIIEDKILCMHGGIGRSINHVSEIEDLKRPLTMEFGEQVVMDLLWSDPTENDSVLGLRPNAIDPRGPGLIVKF 240 (311)
T ss_pred HHhCchhheecccEEEEccCCCCCCCcHHHHhhcCCCCCCCCCCcceeeeeccCccccccccccccCCCCCCCCCcceeE
Confidence 99999999999999999999999999999999999998544444589999999999765567888876 99995 799
Q ss_pred CHHHHHHHHHHcCCeEEEEcccccccceEEecCCeEEEEeccCCCCCCCCCeEEEEEEcCCceEEEEEecC
Q 004569 629 GPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHP 699 (744)
Q Consensus 629 g~~~v~~fL~~n~l~~IIRgHe~v~~G~~~~~~~~liTVFSa~nY~~~~~N~gavl~i~~~~~~~~~~~~~ 699 (744)
|++++++||++||+++||||||++++||+++++++|||||||||||+..+|+||+++|++++++++++|+|
T Consensus 241 g~~~~~~Fl~~n~l~~iiRgHe~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~~ai~~i~~~~~~~~~~~~~ 311 (311)
T cd07419 241 GPDRVHRFLEENDLQMIIRAHECVMDGFERFAQGKLITLFSATNYCGTAGNAGAILVLGRDLTIIPKLIHP 311 (311)
T ss_pred CHHHHHHHHHHCCCeEEEEechhhhCCeEEeCCCeEEEEecCCcccCCCCceEEEEEECCCCcEeEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987
No 6
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=2e-70 Score=536.98 Aligned_cols=274 Identities=38% Similarity=0.741 Sum_probs=263.1
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCCeeeecCceEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChHH
Q 004569 416 FLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLE 495 (744)
Q Consensus 416 ~l~~~~i~~L~~~a~~il~~ep~ll~l~~pi~VvGDIHG~~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~slE 495 (744)
.|+++|+..||+.++++|..|.+++.++.|+.|+|||||||+||+++|+..|-.++. +|+|+|||||||.+|+|
T Consensus 18 yLpE~elk~LCe~v~d~L~eEsNvqPV~tPVTvCGDIHGQFyDL~eLFrtgG~vP~t------nYiFmGDfVDRGyySLE 91 (306)
T KOG0373|consen 18 YLPENELKRLCEMVKDILMEESNVQPVSTPVTVCGDIHGQFYDLLELFRTGGQVPDT------NYIFMGDFVDRGYYSLE 91 (306)
T ss_pred CCCHHHHHHHHHHHHHHHhhhcCccccCCCeeEeeccchhHHHHHHHHHhcCCCCCc------ceEEeccccccccccHH
Confidence 689999999999999999999999999999999999999999999999998876654 89999999999999999
Q ss_pred HHHHHHHhhhhCCCCeEEEecCccccchhhhcCChHHHHHHhCcccchhhhhhhhhHhhccceeeEEeCcEEEecCCCCC
Q 004569 496 TITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGR 575 (744)
Q Consensus 496 vl~lL~~LK~~~P~~v~lLRGNHE~~~l~~~~gf~~E~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHGGi~~ 575 (744)
++.+|+.||.+||.+|.+||||||.+.+...|||++||..|||.. +.|+.+.++|+.|+++|+|+++++|||||+||
T Consensus 92 tfT~l~~LkaryP~~ITLlRGNHEsRqitqVYGFydECq~KYGna---n~wkycckVFD~LtlaAiID~~vLCVHGGLSP 168 (306)
T KOG0373|consen 92 TFTLLLLLKARYPAKITLLRGNHESRQITQVYGFYDECQNKYGNA---NVWKYCCKVFDFLTLAAIIDEKVLCVHGGLSP 168 (306)
T ss_pred HHHHHHHHhhcCCceeEEeeccchhhhhhhhhhhHHHHHhhcCCc---hHHHHHHHHHhhhhHHHHhcCcEEEEcCCCCc
Confidence 999999999999999999999999999999999999999999975 79999999999999999999999999999999
Q ss_pred CCCChhhhhhccCCccccCCcceeeeccccCCCCCCCCCCcccCCCCCCceeeCHHHHHHHHHHcCCeEEEEcccccccc
Q 004569 576 SINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDG 655 (744)
Q Consensus 576 ~~~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~Fg~~~v~~fL~~n~l~~IIRgHe~v~~G 655 (744)
.+.++++|+-|.|-.+++.++ .+|||+||||++ ++.|.-++||+| ..||.+++.+|+..|+|++|+|+||.|++|
T Consensus 169 dirtlDqir~i~R~qEiPh~G-~fcDlmWSDPed---ve~W~vSpRGAG-wlFGskVt~eF~~iN~L~LicRaHQLV~EG 243 (306)
T KOG0373|consen 169 DIRTLDQIRLIERNQEIPHEG-PFCDLMWSDPED---VETWAVSPRGAG-WLFGSKVTTEFNHINNLNLICRAHQLVQEG 243 (306)
T ss_pred cceeHHHHHhHHhhccCCCCC-CccceeccChhh---hhhheeCCCCcc-eeechhhhHHHHhccchHHHHhHHHHHHhh
Confidence 999999999999999998876 799999999985 789999999999 689999999999999999999999999999
Q ss_pred eEEecCCe-EEEEeccCCCCCCCCCeEEEEEEcCCceEEEEEecCCCCC
Q 004569 656 FERFAQGH-LITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPA 703 (744)
Q Consensus 656 ~~~~~~~~-liTVFSa~nY~~~~~N~gavl~i~~~~~~~~~~~~~~~~~ 703 (744)
|++.+++| |+|||||||||+..+|.|+||.++.+++-++|+|...++.
T Consensus 244 ~KymF~eK~lvTVWSAPNYCYRCGNvAsi~~~d~~~~r~~k~F~avpd~ 292 (306)
T KOG0373|consen 244 FKYMFDEKGLVTVWSAPNYCYRCGNVASIMSFDDNLERETKIFSAVPDN 292 (306)
T ss_pred HHhccCCCCEEEEecCCchhhhccCeeeEEEecccCCccceeeeecCCc
Confidence 99988888 9999999999999999999999999999999999887654
No 7
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=100.00 E-value=6.6e-68 Score=563.50 Aligned_cols=291 Identities=38% Similarity=0.745 Sum_probs=270.2
Q ss_pred chHHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCceEEEecCCCCHHHHHHHHHHhCCCCC
Q 004569 392 SVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPST 471 (744)
Q Consensus 392 ~~~~~~i~~ll~~~~~~~~~~~~~~l~~~~i~~L~~~a~~il~~ep~ll~l~~pi~VvGDIHG~~~dL~~il~~~g~p~~ 471 (744)
++++++|+.+++...+. ......++.++|.+||++|+++|++||++++++.|++|+|||||||.+|.++|+..++++.
T Consensus 2 ~~~~~~i~~~~~~~~~~--~~~~~~i~~~~i~~l~~~~~~il~~e~~ll~i~~p~~ViGDIHG~~~~L~~l~~~~~~~~~ 79 (294)
T PTZ00244 2 SLVQTLIEKMLTVKGNR--TQRQILIREEDIRAVLTEVREIFMSQPMLLEIRPPVRVCGDTHGQYYDLLRIFEKCGFPPY 79 (294)
T ss_pred chHHHHHHHHHhcccCC--CccccCCCHHHHHHHHHHHHHHHHhCCCeEeccCCceeeccCCCCHHHHHHHHHHcCCCCc
Confidence 45788899999865433 2234578999999999999999999999999999999999999999999999999999876
Q ss_pred CCCcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccccchhhhcCChHHHHHHhCcccchhhhhhhhh
Q 004569 472 AGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINR 551 (744)
Q Consensus 472 ~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~l~~~~gf~~E~~~~~g~~~~~~~~~~~~~ 551 (744)
+ +|||||||||||++|+||+.+|+++|+.+|.++++||||||...++..|||++|+..+|+ ..+|..+.+
T Consensus 80 ~------~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~y~----~~l~~~~~~ 149 (294)
T PTZ00244 80 S------NYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDVKRRYN----IKLFKAFTD 149 (294)
T ss_pred c------cEEEeeeEecCCCCHHHHHHHHHHHhhccCCeEEEEecccchHhHhhccChHHHHHHHhh----HHHHHHHHH
Confidence 5 799999999999999999999999999999999999999999999999999999999995 469999999
Q ss_pred HhhccceeeEEeCcEEEecCCCCCCCCChhhhhhccCCccccCCcceeeeccccCCCCCCCCCCcccCCCCCCceeeCHH
Q 004569 552 LFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPD 631 (744)
Q Consensus 552 ~f~~LPlaa~i~~~il~vHGGi~~~~~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~Fg~~ 631 (744)
+|++||++|+++++++|||||++|.+.++++|+.++||.+.+.. .+++|+|||||.. ...+|.+|+||.| +.||++
T Consensus 150 ~f~~lPlaaii~~~il~vHgGi~p~~~~l~~i~~i~rp~~~~~~-~~~~dllWsDP~~--~~~~~~~~~Rg~g-~~fg~~ 225 (294)
T PTZ00244 150 VFNTMPVCCVISEKIICMHGGLSPDLTSLASVNEIERPCDVPDR-GILCDLLWADPED--EVRGFLESDRGVS-YLFGED 225 (294)
T ss_pred HHHhCchheEecCeeEEEcCCCCchhhHHHHhhhhccccCCCcc-chhheeeecCccc--ccCCCCcCCCCCc-cccCHH
Confidence 99999999999999999999999999999999999999987654 4899999999985 3578999999999 689999
Q ss_pred HHHHHHHHcCCeEEEEcccccccceEEecCCeEEEEeccCCCCCCCCCeEEEEEEcCCceEEEEEec
Q 004569 632 RVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIH 698 (744)
Q Consensus 632 ~v~~fL~~n~l~~IIRgHe~v~~G~~~~~~~~liTVFSa~nY~~~~~N~gavl~i~~~~~~~~~~~~ 698 (744)
++++||++||+++||||||++++||+++++++|||||||||||+..+|+||+|.|++++.+++++|.
T Consensus 226 ~~~~Fl~~n~l~~iiR~Hq~~~~G~~~~~~~~~iTvfSa~~Y~~~~~N~~a~l~i~~~~~~~f~~~~ 292 (294)
T PTZ00244 226 IVNDFLDMVDMDLIVRAHQVMERGYGFFASRQLVTVFSAPNYCGEFDNDAAVMNIDDKLQCSFLIIP 292 (294)
T ss_pred HHHHHHHHcCCcEEEEcCccccCceEEcCCCeEEEEeCCccccCCCCceEEEEEECCCCcEeEEEee
Confidence 9999999999999999999999999999999999999999999999999999999999999988764
No 8
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=100.00 E-value=9.7e-68 Score=560.80 Aligned_cols=283 Identities=43% Similarity=0.772 Sum_probs=265.9
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCceEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 004569 394 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAG 473 (744)
Q Consensus 394 ~~~~i~~ll~~~~~~~~~~~~~~l~~~~i~~L~~~a~~il~~ep~ll~l~~pi~VvGDIHG~~~dL~~il~~~g~p~~~~ 473 (744)
++++|+.+++.. .|+.+++.+||++|+++|++||++++++.|++||||||||+.+|.++|+..++++.+
T Consensus 2 ~~~~~~~~~~~~----------~l~~~~~~~l~~~~~~il~~e~~~~~i~~~i~vvGDIHG~~~dL~~ll~~~~~~~~~- 70 (285)
T cd07415 2 LDKWIEQLKKCE----------LLPESEVKSLCEKAKEILVKESNVQRVRSPVTVCGDIHGQFYDLLELFRVGGDPPDT- 70 (285)
T ss_pred HHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCEEecCCCEEEEEeCCCCHHHHHHHHHHcCCCCCC-
Confidence 467788888632 478999999999999999999999999999999999999999999999999987765
Q ss_pred CcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccccchhhhcCChHHHHHHhCcccchhhhhhhhhHh
Q 004569 474 DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLF 553 (744)
Q Consensus 474 ~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~l~~~~gf~~E~~~~~g~~~~~~~~~~~~~~f 553 (744)
+|||||||||||++|+||+.+|++||+.+|.+|++||||||.+.++..|||.+||..+|+. ..+|..+.++|
T Consensus 71 -----~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~ygf~~e~~~~y~~---~~l~~~~~~~f 142 (285)
T cd07415 71 -----NYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVYGFYDECLRKYGN---ANVWKYCTDLF 142 (285)
T ss_pred -----eEEEEeEECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccchHhhhhhcchhHHHHHhcCc---hHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999974 36999999999
Q ss_pred hccceeeEEeCcEEEecCCCCCCCCChhhhhhccCCccccCCcceeeeccccCCCCCCCCCCcccCCCCCCceeeCHHHH
Q 004569 554 NWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRV 633 (744)
Q Consensus 554 ~~LPlaa~i~~~il~vHGGi~~~~~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~Fg~~~v 633 (744)
++||++|++++++|||||||+|.+.++++|+.++||.+.+..+ ++.|+|||||... .+|.+|+||.| +.||++++
T Consensus 143 ~~lPlaaii~~~i~cvHgGi~p~~~~~~~i~~i~r~~~~~~~~-~~~dllWsDP~~~---~~~~~~~Rg~g-~~fg~~~~ 217 (285)
T cd07415 143 DYLPLAALIDNQIFCVHGGLSPSIDTLDQIRAIDRFQEVPHEG-PMCDLLWSDPDDI---EGWGISPRGAG-YLFGQDVV 217 (285)
T ss_pred HHhHHHhEeCCeEEEEcCCCCCCcccHHHhhcccCCCCCCCCC-CccceEecCCCcc---CCCCcCCCCCc-cccCHHHH
Confidence 9999999999999999999999999999999999999876654 7899999999863 68999999999 68999999
Q ss_pred HHHHHHcCCeEEEEcccccccceEEecCCeEEEEeccCCCCCCCCCeEEEEEEcCCceEEEEEecCC
Q 004569 634 MEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPL 700 (744)
Q Consensus 634 ~~fL~~n~l~~IIRgHe~v~~G~~~~~~~~liTVFSa~nY~~~~~N~gavl~i~~~~~~~~~~~~~~ 700 (744)
++||++||+++||||||++++||++.++++|||||||||||+..+|+||+|.|++++++.++.|.|.
T Consensus 218 ~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~y~~~~~n~~a~l~i~~~~~~~~~~~~~~ 284 (285)
T cd07415 218 EEFNHNNGLTLICRAHQLVMEGYQWMFDDKLVTVWSAPNYCYRCGNVASIMELDEHLKRSFKVFEAA 284 (285)
T ss_pred HHHHHHCCCeEEEEcCccccceEEEecCCcEEEEecCCcccCCCCceEEEEEECCCCcEeEEEeccC
Confidence 9999999999999999999999999999999999999999999999999999999999999988764
No 9
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=100.00 E-value=8.5e-68 Score=563.26 Aligned_cols=290 Identities=49% Similarity=0.864 Sum_probs=270.0
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCceEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 004569 394 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAG 473 (744)
Q Consensus 394 ~~~~i~~ll~~~~~~~~~~~~~~l~~~~i~~L~~~a~~il~~ep~ll~l~~pi~VvGDIHG~~~dL~~il~~~g~p~~~~ 473 (744)
++++|+.+++.+.++. .....|+++++.+||++|+++|++||++++++.|++||||||||+.+|.++|+..++++.+
T Consensus 2 ~~~~i~~~~~~~~~~~--~~~~~~~~~~i~~l~~~~~~il~~ep~~l~i~~~i~viGDIHG~~~~L~~l~~~~~~~~~~- 78 (293)
T cd07414 2 IDSIIERLLEVRGSRP--GKNVQLTEAEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPES- 78 (293)
T ss_pred HHHHHHHHHhccccCC--cccCCCCHHHHHHHHHHHHHHHHhCCCeEecCCceEEEEecCCCHHHHHHHHHhcCCCCcc-
Confidence 4678888888665543 2344689999999999999999999999999999999999999999999999999998765
Q ss_pred CcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccccchhhhcCChHHHHHHhCcccchhhhhhhhhHh
Q 004569 474 DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLF 553 (744)
Q Consensus 474 ~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~l~~~~gf~~E~~~~~g~~~~~~~~~~~~~~f 553 (744)
+|||||||||||++|+|++.+|+++|+.||.++++||||||.+.++..|||..||..+|+ ..+|..+.++|
T Consensus 79 -----~~lfLGDyVDRG~~s~e~i~ll~~lk~~~p~~i~llrGNHE~~~~~~~~gf~~e~~~~y~----~~l~~~~~~~f 149 (293)
T cd07414 79 -----NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYN----IKLWKTFTDCF 149 (293)
T ss_pred -----eEEEEeeEecCCCCcHHHHHHHHHhhhhCCCcEEEEecccchhhHhhhcchhhHHHHhhh----HHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999985 46999999999
Q ss_pred hccceeeEEeCcEEEecCCCCCCCCChhhhhhccCCccccCCcceeeeccccCCCCCCCCCCcccCCCCCCceeeCHHHH
Q 004569 554 NWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRV 633 (744)
Q Consensus 554 ~~LPlaa~i~~~il~vHGGi~~~~~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~Fg~~~v 633 (744)
++||++|++++++||||||++|.+.++++|+.++||.+.+.. .+++|+|||||.. ...+|.+|+||.| +.||++++
T Consensus 150 ~~lPlaa~i~~~i~cvHgGi~p~~~~l~~i~~i~r~~~~~~~-~~~~dllWsDP~~--~~~~~~~~~Rg~g-~~fg~~~~ 225 (293)
T cd07414 150 NCLPVAAIIDEKIFCMHGGLSPDLQSMEQIRRIMRPTDVPDQ-GLLCDLLWSDPDK--DVQGWGENDRGVS-FTFGKDVV 225 (293)
T ss_pred HHhHHHHhhCCcEEEEccCCCcccCcHHHHhcccCCCCCCch-hhHhhhhccCccc--ccCCCccCCCCcc-eecCHHHH
Confidence 999999999999999999999999999999999999887654 3899999999986 3578999999999 68999999
Q ss_pred HHHHHHcCCeEEEEcccccccceEEecCCeEEEEeccCCCCCCCCCeEEEEEEcCCceEEEEEecC
Q 004569 634 MEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHP 699 (744)
Q Consensus 634 ~~fL~~n~l~~IIRgHe~v~~G~~~~~~~~liTVFSa~nY~~~~~N~gavl~i~~~~~~~~~~~~~ 699 (744)
++||++||+++||||||++++||+++++++|||||||||||+..+|+||+|.|++++.+.++.|.|
T Consensus 226 ~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~iTvfSa~~Y~~~~~N~~a~l~i~~~~~~~~~~~~~ 291 (293)
T cd07414 226 AKFLNKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKP 291 (293)
T ss_pred HHHHHHcCCeEEEECCccccCeEEEeCCCcEEEEecCCcccCCCCceEEEEEECCCCcEEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999998875
No 10
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=100.00 E-value=3e-67 Score=560.18 Aligned_cols=286 Identities=41% Similarity=0.749 Sum_probs=265.6
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCceEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 004569 394 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAG 473 (744)
Q Consensus 394 ~~~~i~~ll~~~~~~~~~~~~~~l~~~~i~~L~~~a~~il~~ep~ll~l~~pi~VvGDIHG~~~dL~~il~~~g~p~~~~ 473 (744)
++++|+.+++.. .|+++++.+||++|+++|++||++++++.|++|+||||||+.+|.++|+..+.++..
T Consensus 3 ~~~~~~~~~~~~----------~l~~~~i~~l~~~~~~il~~e~~~~~i~~~i~vvGDIHG~~~~L~~l~~~~~~~~~~- 71 (303)
T PTZ00239 3 IDRHIATLLNGG----------CLPERDLKLICERAKEIFLEESNVQPVRAPVNVCGDIHGQFYDLQALFKEGGDIPNA- 71 (303)
T ss_pred HHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCeEecCCCEEEEEeCCCCHHHHHHHHHhcCCCCCc-
Confidence 567888887632 478999999999999999999999999999999999999999999999999887655
Q ss_pred CcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccccchhhhcCChHHHHHHhCcccchhhhhhhhhHh
Q 004569 474 DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLF 553 (744)
Q Consensus 474 ~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~l~~~~gf~~E~~~~~g~~~~~~~~~~~~~~f 553 (744)
+|||||||||||++|+|++.+|++||+.+|.+|++||||||.+.++..|||++||..+|+.. .+|..++++|
T Consensus 72 -----~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~ky~~~---~~~~~~~~~f 143 (303)
T PTZ00239 72 -----NYIFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYGFYEEILRKYGNS---NPWRLFMDVF 143 (303)
T ss_pred -----eEEEeeeEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccchHHHhhhcChHHHHHHHhcCh---hHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999753 5899999999
Q ss_pred hccceeeEEeCcEEEecCCCCCCCCChhhhhhccCCccccCCcceeeeccccCCCCCCCCCCcccCCCCCCceeeCHHHH
Q 004569 554 NWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRV 633 (744)
Q Consensus 554 ~~LPlaa~i~~~il~vHGGi~~~~~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~Fg~~~v 633 (744)
++||++|+|++++|||||||+|.+.++++|+.++||.+.+..+ .++|+|||||.. ..+|.+|+||.| +.||++++
T Consensus 144 ~~LPlaaii~~~i~cvHgGi~p~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~---~~~~~~~~Rg~g-~~fg~~~~ 218 (303)
T PTZ00239 144 DCLPLAALIEGQILCVHGGLSPDMRTIDQIRTIDRKIEIPHEG-PFCDLMWSDPEE---VEYWAVNSRGAG-YLFGAKVT 218 (303)
T ss_pred HhCchheEEcCeEEEEcCccCcccccHhhhccccCCCCCCCCC-CceeeEecCccc---cCCCccCCCCCc-cccCHHHH
Confidence 9999999999999999999999999999999999999877654 789999999975 468999999999 68999999
Q ss_pred HHHHHHcCCeEEEEcccccccceEEecC-CeEEEEeccCCCCCCCCCeEEEEEEcCCceEEEEEecCCCCC
Q 004569 634 MEFCNNNDLQLIVRAHECVMDGFERFAQ-GHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPA 703 (744)
Q Consensus 634 ~~fL~~n~l~~IIRgHe~v~~G~~~~~~-~~liTVFSa~nY~~~~~N~gavl~i~~~~~~~~~~~~~~~~~ 703 (744)
++||++||+++||||||++++||+++++ ++|||||||||||+..+|+||+|.+++++++.++.|.|.+..
T Consensus 219 ~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~iTvfSa~~Y~~~~~N~~ail~i~~~~~~~~~~~~~~~~~ 289 (303)
T PTZ00239 219 KEFCRLNDLTLICRAHQLVMEGYKYWFPDQNLVTVWSAPNYCYRCGNIASILCLDENLQQTWKTFKEVPES 289 (303)
T ss_pred HHHHHHCCCcEEEEcChhhccceEEEeCCCeEEEEECCCcccCCCCceEEEEEECCCCcEeeEEeeCCCcc
Confidence 9999999999999999999999998765 459999999999999999999999999999999999887554
No 11
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=100.00 E-value=3.1e-66 Score=555.79 Aligned_cols=291 Identities=35% Similarity=0.631 Sum_probs=267.2
Q ss_pred CCchHHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCc----eEEEecCCCCHHHHHHHHHH
Q 004569 390 INSVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAP----IKIFGDLHGQFGDLMRLFDE 465 (744)
Q Consensus 390 ~~~~~~~~i~~ll~~~~~~~~~~~~~~l~~~~i~~L~~~a~~il~~ep~ll~l~~p----i~VvGDIHG~~~dL~~il~~ 465 (744)
+.++++++|+.+.+.+ .|+.+++.+||++|.++|++||++++++.| ++|||||||||.+|+++|+.
T Consensus 12 ~~~~~~~~~~~~~~~~----------~l~~~~~~~l~~~~~~il~~ep~l~~i~~p~~~~~~VvGDIHG~~~dL~~ll~~ 81 (316)
T cd07417 12 TLEFVKEMIEWFKDQK----------KLHKKYAYQILLQVKELLKKLPSLVEITIPEGEKITVCGDTHGQFYDLLNIFEL 81 (316)
T ss_pred CHHHHHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCcceeccCCCCceeEEeecccCCHHHHHHHHHh
Confidence 3566888999888742 478899999999999999999999999877 99999999999999999999
Q ss_pred hCCCCCCCCcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccccchhhhcCChHHHHHHhCcccchhh
Q 004569 466 YGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWA 545 (744)
Q Consensus 466 ~g~p~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~l~~~~gf~~E~~~~~g~~~~~~~ 545 (744)
.|+++... +|||||||||||++|+||+.+|++||+.+|.+|++||||||.+.++..|||..|+..+|+. .+
T Consensus 82 ~g~~~~~~-----~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~~~~~~~gf~~e~~~k~~~----~l 152 (316)
T cd07417 82 NGLPSETN-----PYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYGFEGEVKAKYNE----QM 152 (316)
T ss_pred cCCCCccC-----eEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchHHHHHHhhhcchhhhcccH----HH
Confidence 99876542 7999999999999999999999999999999999999999999999999999999999853 69
Q ss_pred hhhhhhHhhccceeeEEeCcEEEecCCC-CCCCCChhhhhhccCCccccCCcceeeeccccCCCCCCCCCCcccCCCCCC
Q 004569 546 WHRINRLFNWLPLAALIEKKIICMHGGI-GRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPG 624 (744)
Q Consensus 546 ~~~~~~~f~~LPlaa~i~~~il~vHGGi-~~~~~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g 624 (744)
|..+.++|++||++++++++++|||||| ++...++++|++++||.+.+.. .+++|+|||||.. ..+|.+|+||.|
T Consensus 153 ~~~~~~~f~~LPlaaii~~~~~~vHgGi~~~~~~~l~~i~~i~r~~~~~~~-~~~~dllWsDP~~---~~~~~~s~Rg~g 228 (316)
T cd07417 153 FDLFSEVFNWLPLAHLINGKVLVVHGGLFSDDGVTLDDIRKIDRFRQPPDS-GLMCELLWSDPQP---QPGRSPSKRGVG 228 (316)
T ss_pred HHHHHHHHHhchHhheeCCeEEEEccccccCCCccHHHhhcccCCCCCCcc-ccceeeeecCCCC---CCCCCccCCCCc
Confidence 9999999999999999999999999999 5678999999999999776544 4899999999985 357899999999
Q ss_pred ceeeCHHHHHHHHHHcCCeEEEEcccccccceEEecCCeEEEEeccCCCCCCCCCeEEEEEEcC-CceEEEEEecCCCCC
Q 004569 625 LVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGR-DLVVVPKLIHPLPPA 703 (744)
Q Consensus 625 ~~~Fg~~~v~~fL~~n~l~~IIRgHe~v~~G~~~~~~~~liTVFSa~nY~~~~~N~gavl~i~~-~~~~~~~~~~~~~~~ 703 (744)
+.||++++++||++||+++||||||++++||+++++++|+|||||||||+..+|+||+|+|++ ++++.++.|.|.+..
T Consensus 229 -~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~Y~~~~~N~ga~~~i~~~~~~~~~~~~~~~~~~ 307 (316)
T cd07417 229 -CQFGPDVTKRFLEENNLEYIIRSHEVKDEGYEVEHDGKCITVFSAPNYCDQMGNKGAFIRITGSDLKPKFTQFEAVPHP 307 (316)
T ss_pred -eEeCHHHHHHHHHHcCCcEEEECCcccceeEEEecCCeEEEEeCCccccCCCCcceEEEEEeCCCceeeeEeccCCCCC
Confidence 689999999999999999999999999999999999999999999999999999999999999 899999999877555
Q ss_pred C
Q 004569 704 I 704 (744)
Q Consensus 704 ~ 704 (744)
.
T Consensus 308 ~ 308 (316)
T cd07417 308 N 308 (316)
T ss_pred C
Confidence 4
No 12
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=100.00 E-value=2.5e-65 Score=547.51 Aligned_cols=285 Identities=36% Similarity=0.634 Sum_probs=258.7
Q ss_pred HHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCceEEEecCCCCHHHHHHHHHHhCCCCCCCC
Q 004569 395 KKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAGD 474 (744)
Q Consensus 395 ~~~i~~ll~~~~~~~~~~~~~~l~~~~i~~L~~~a~~il~~ep~ll~l~~pi~VvGDIHG~~~dL~~il~~~g~p~~~~~ 474 (744)
+-+++.+++.. .|+++++.+||++|+++|++||++++++.|++||||||||+.||.++|+..+.++.+
T Consensus 4 ~~~~~~~~~~~----------~l~~~~i~~l~~~~~~il~~e~~l~~i~~~i~ViGDIHG~~~dL~~l~~~~g~~~~~-- 71 (305)
T cd07416 4 DVLKAHFMREG----------RLSEEDALRIITEGAEILRQEPNLLRIEAPVTVCGDIHGQFYDLLKLFEVGGSPANT-- 71 (305)
T ss_pred HHHHHHHHcCC----------CCCHHHHHHHHHHHHHHHHhCCCeEccCCCEEEEEeCCCCHHHHHHHHHhcCCCCCc--
Confidence 34556666532 478999999999999999999999999999999999999999999999999988765
Q ss_pred cceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccccchhhhcCChHHHHHHhCcccchhhhhhhhhHhh
Q 004569 475 IAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFN 554 (744)
Q Consensus 475 ~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~l~~~~gf~~E~~~~~g~~~~~~~~~~~~~~f~ 554 (744)
+|||||||||||++|+||+.+|++||+.||.+|++||||||.+.++..|||..|+..+|+ ..+|..+.++|+
T Consensus 72 ----~ylFLGDyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~y~----~~l~~~~~~~f~ 143 (305)
T cd07416 72 ----RYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYS----ERVYDACMEAFD 143 (305)
T ss_pred ----eEEEECCccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHHHHHHhhCchhHHHHhcc----HHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999999998884 469999999999
Q ss_pred ccceeeEEeCcEEEecCCCCCCCCChhhhhhccCCccccCCcceeeeccccCCCCCCCC----CCcccC-CCCCCceeeC
Q 004569 555 WLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSV----EGLRPN-ARGPGLVTFG 629 (744)
Q Consensus 555 ~LPlaa~i~~~il~vHGGi~~~~~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~----~g~~~n-~Rg~g~~~Fg 629 (744)
+||++++++++++||||||+|.+.++++|++++||.+.+..+ +++|+|||||...+.. .+|.+| .||.| +.||
T Consensus 144 ~LPlaaii~~~i~~vHGGi~p~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~~~~~~~~~~~~~~~~~Rg~g-~~fG 221 (305)
T cd07416 144 CLPLAALMNQQFLCVHGGLSPELKTLDDIRKLDRFREPPAFG-PMCDLLWSDPLEDFGNEKTQEHFVHNTVRGCS-YFYS 221 (305)
T ss_pred hccceeEEcCCEEEEcCCCCcccccHHHhcccCCCCCCCCCC-cceeeeecCcccccccccccccccccCCCCCc-eecC
Confidence 999999999999999999999999999999999998776554 7899999999764321 257776 89999 6899
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccceEEecCC------eEEEEeccCCCCCCCCCeEEEEEEcCCceEEEEEecCCCC
Q 004569 630 PDRVMEFCNNNDLQLIVRAHECVMDGFERFAQG------HLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPP 702 (744)
Q Consensus 630 ~~~v~~fL~~n~l~~IIRgHe~v~~G~~~~~~~------~liTVFSa~nY~~~~~N~gavl~i~~~~~~~~~~~~~~~~ 702 (744)
++++++||++||+++||||||++++||++++++ +|||||||||||+..+|+||+|.++++. +.++.+.+.+-
T Consensus 222 ~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~~~~~~iTvFSa~~Y~~~~~N~~a~l~i~~~~-~~~~~~~~~~~ 299 (305)
T cd07416 222 YRAVCEFLQKNNLLSIIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNV-MNIRQFNCSPH 299 (305)
T ss_pred HHHHHHHHHHcCCeEEEEeccccccceEEecCCCcCCCCcEEEEeCCccccCCCCceEEEEEEcCCc-ceEEEecCCCC
Confidence 999999999999999999999999999998886 9999999999999999999999999885 68888876543
No 13
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=100.00 E-value=1.7e-65 Score=541.25 Aligned_cols=269 Identities=46% Similarity=0.889 Sum_probs=254.7
Q ss_pred cCHHHHHHHHHHHHHHHhcCCCeeeecCceEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChHHH
Q 004569 417 LDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLET 496 (744)
Q Consensus 417 l~~~~i~~L~~~a~~il~~ep~ll~l~~pi~VvGDIHG~~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~slEv 496 (744)
++++++.+||++|+++|++||+++++++|++||||||||+.+|.++|+..+.++.+ +|||||||||||++|+||
T Consensus 1 ~~~~~i~~l~~~~~~il~~e~~~~~i~~~i~vvGDiHG~~~~l~~ll~~~~~~~~~------~~vfLGD~VDrG~~s~e~ 74 (271)
T smart00156 1 LYAEEILELLREVKEIFRQEPNLVEVSAPVTVCGDIHGQFDDLLRLFDLNGPPPDT------NYVFLGDYVDRGPFSIEV 74 (271)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEeCCCEEEEEeCcCCHHHHHHHHHHcCCCCCc------eEEEeCCccCCCCChHHH
Confidence 35789999999999999999999999999999999999999999999999987665 899999999999999999
Q ss_pred HHHHHHhhhhCCCCeEEEecCccccchhhhcCChHHHHHHhCcccchhhhhhhhhHhhccceeeEEeCcEEEecCCCCCC
Q 004569 497 ITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRS 576 (744)
Q Consensus 497 l~lL~~LK~~~P~~v~lLRGNHE~~~l~~~~gf~~E~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHGGi~~~ 576 (744)
+.+|++||+.+|.++++||||||.+.++..|||.+||..+|+ ..+|..+.++|++||++|+++++++||||||+|.
T Consensus 75 l~~l~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~----~~l~~~~~~~f~~LPl~aii~~~~~~vHgGi~~~ 150 (271)
T smart00156 75 ILLLFALKILYPNRVVLLRGNHESRSMNEIYGFYDECKRKYG----EEIYEKFQEAFSWLPLAALIDNKILCMHGGLSPD 150 (271)
T ss_pred HHHHHHHHhcCCCCEEEEeccccHHHHHHhccchhhhhhhcC----HHHHHHHHHHHhhChhheEEcCeEEEEecCCCCc
Confidence 999999999999999999999999999999999999999985 4699999999999999999999999999999999
Q ss_pred CCChhhhhhccCCccccCCcceeeeccccCCCCCCCCCCcccCCCCCCceeeCHHHHHHHHHHcCCeEEEEcccccccce
Q 004569 577 INHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGF 656 (744)
Q Consensus 577 ~~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~Fg~~~v~~fL~~n~l~~IIRgHe~v~~G~ 656 (744)
+.++++|++++||.+.+.. .+++|+|||||.. ...+|.+|+||.| +.||++++++||++||+++||||||++++||
T Consensus 151 ~~~l~~i~~i~r~~~~~~~-~~~~dllWsDP~~--~~~~~~~~~Rg~g-~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~ 226 (271)
T smart00156 151 LTTLDDIRKLKRPQEPPDE-GLLIDLLWSDPDQ--PVDGFQPSIRGAS-YYFGPDAVDEFLKKNNLKLIIRAHQVVDDGY 226 (271)
T ss_pred cCCHHHHhcccCCCCCCch-hhhhheeecCCCc--ccCCCccCCCCCc-cccCHHHHHHHHHHCCCeEEEecCcccCCcE
Confidence 9999999999999877654 4899999999974 3578999999999 6899999999999999999999999999999
Q ss_pred EEecCCeEEEEeccCCCCCCCCCeEEEEEEcCCceEEEEEecC
Q 004569 657 ERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHP 699 (744)
Q Consensus 657 ~~~~~~~liTVFSa~nY~~~~~N~gavl~i~~~~~~~~~~~~~ 699 (744)
+++++++|||||||||||+..+|+||+|.|++++.+.++.+.|
T Consensus 227 ~~~~~~~~~TvfSa~~y~~~~~n~~a~~~i~~~~~~~~~~~~~ 269 (271)
T smart00156 227 EFFHDRKLVTIFSAPNYCGRFGNKAAVLKVDKDLKLSFEQFKP 269 (271)
T ss_pred EEecCCcEEEEECCcccccCCCceEEEEEECCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999998875
No 14
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=100.00 E-value=5.1e-63 Score=537.13 Aligned_cols=298 Identities=33% Similarity=0.577 Sum_probs=257.1
Q ss_pred chHHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeec----CceEEEecCCCCHHHHHHHHHHhC
Q 004569 392 SVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLK----APIKIFGDLHGQFGDLMRLFDEYG 467 (744)
Q Consensus 392 ~~~~~~i~~ll~~~~~~~~~~~~~~l~~~~i~~L~~~a~~il~~ep~ll~l~----~pi~VvGDIHG~~~dL~~il~~~g 467 (744)
+..+.+|+.+......-++......|+.+++.+||++|+++|++||++++++ .|++||||||||+.+|+++|+..|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~a~~il~~ep~ll~i~~~~~~~i~VvGDIHG~~~dL~~ll~~~g 89 (377)
T cd07418 10 EWVHELMSVFEWSSRNLPPSELPSVLPVNVFDSLVLTAHKILHREPNCVRIDVEDVCEVVVVGDVHGQLHDVLFLLEDAG 89 (377)
T ss_pred HHHHHHHHHHHhcccccCchhhccCCCHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCEEEEEecCCCHHHHHHHHHHhC
Confidence 3456777776543222123344456899999999999999999999999998 899999999999999999999999
Q ss_pred CCCCCCCcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccccchhhhcCChHHHHHHhCcccchhhhh
Q 004569 468 SPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWH 547 (744)
Q Consensus 468 ~p~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~l~~~~gf~~E~~~~~g~~~~~~~~~ 547 (744)
+++.+. +|||||||||||++|+||+.+|++||+.+|.+|++||||||.+.++..|||.+||..+|+.. +..+|+
T Consensus 90 ~~~~~~-----~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~~i~~~~Gf~~E~~~~y~~~-~~~l~~ 163 (377)
T cd07418 90 FPDQNR-----FYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKYGDK-GKHVYR 163 (377)
T ss_pred CCCCCc-----eEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccccchhhcccchhhhhhcCch-HHHHHH
Confidence 876542 69999999999999999999999999999999999999999999999999999999999864 567999
Q ss_pred hhhhHhhccceeeEEeCcEEEecCCC---------------------------CCCCCChhhhhhccCCc-cccCCc--c
Q 004569 548 RINRLFNWLPLAALIEKKIICMHGGI---------------------------GRSINHVEQIENLQRPI-TMEAGS--I 597 (744)
Q Consensus 548 ~~~~~f~~LPlaa~i~~~il~vHGGi---------------------------~~~~~~l~~I~~i~Rp~-~~~~~~--~ 597 (744)
.+.++|++||++|+|++++||||||| ++.+.++++|+.++||. +++..+ .
T Consensus 164 ~~~~~f~~LPlaavI~~~i~cvHGGI~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~sl~~i~~i~r~~~~~~~~~~~~ 243 (377)
T cd07418 164 KCLGCFEGLPLASIIAGRVYTAHGGLFRSPSLPKRKKQKGKNRRVLLLEPESESLKLGTLDDLMKARRSVLDPPGEGSNL 243 (377)
T ss_pred HHHHHHHhCCcEEEECCCEEEECCCcCCcccccccccccccccccccccccccCCCCCCHHHHhhCCCCCCCCCCCCccc
Confidence 99999999999999999999999999 34567999999999985 443322 2
Q ss_pred eeeeccccCCCCCCCCCCcccC-CCCCCceeeCHHHHHHHHHHcCCeEEEEcccc------------cccceEEecC---
Q 004569 598 VLMDLLWSDPTENDSVEGLRPN-ARGPGLVTFGPDRVMEFCNNNDLQLIVRAHEC------------VMDGFERFAQ--- 661 (744)
Q Consensus 598 ~~~dlLWsDP~~~~~~~g~~~n-~Rg~g~~~Fg~~~v~~fL~~n~l~~IIRgHe~------------v~~G~~~~~~--- 661 (744)
+++|||||||.. ..+|.+| .||.| +.||++++++||++|++++||||||| |++||+++++
T Consensus 244 i~~dlLWSDP~~---~~g~~~~~~RG~g-~~FG~~~~~~FL~~n~l~~IIRsHe~~~~~~~~~~~~~v~~Gy~~~~~~~~ 319 (377)
T cd07418 244 IPGDVLWSDPSL---TPGLSPNKQRGIG-LLWGPDCTEEFLEKNNLKLIIRSHEGPDAREKRPGLAGMNKGYTVDHDVES 319 (377)
T ss_pred cceeeEeeCCcc---CCCCCccCCCCCc-cccCHHHHHHHHHHcCCcEEEECCCCcccccccccchhhhCceEEeccCCC
Confidence 578999999986 3577777 79999 68999999999999999999999996 7899999887
Q ss_pred CeEEEEeccCCCC------CCCCCeEEEEEEcCCc--eEEEEEecC
Q 004569 662 GHLITLFSATNYC------GTANNAGAILVLGRDL--VVVPKLIHP 699 (744)
Q Consensus 662 ~~liTVFSa~nY~------~~~~N~gavl~i~~~~--~~~~~~~~~ 699 (744)
++||||||||||| +..+|+||+++++.+- ...++.|..
T Consensus 320 ~~liTvFSa~nY~~~~~~~~~~~N~ga~~~~~~~~~~~~~~~~~~~ 365 (377)
T cd07418 320 GKLITLFSAPDYPQFQATEERYNNKGAYIILQPPDFSDPQFHTFEA 365 (377)
T ss_pred CcEEEEecCCccccccccccccCcceEEEEEecCCCCCccceEeec
Confidence 9999999999999 5789999999996643 455666644
No 15
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-61 Score=483.67 Aligned_cols=285 Identities=40% Similarity=0.709 Sum_probs=266.7
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCceEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 004569 394 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAG 473 (744)
Q Consensus 394 ~~~~i~~ll~~~~~~~~~~~~~~l~~~~i~~L~~~a~~il~~ep~ll~l~~pi~VvGDIHG~~~dL~~il~~~g~p~~~~ 473 (744)
++..|+.|.+-+ .+++.++..||+.|+++|.+|.+|..+..|++||||+||||+||+++|+..|..+..
T Consensus 20 vd~~ie~L~~ck----------~lse~~v~~lc~~a~~~L~~e~nV~~v~~pvtvcGDvHGqf~dl~ELfkiGG~~pdt- 88 (319)
T KOG0371|consen 20 VDPWIEQLYKCK----------PLSEVDVSSLCLLAKEILDKEENVQPVNCPVTVCGDVHGQFHDLIELFKIGGLAPDT- 88 (319)
T ss_pred cccchHHHHhcC----------CCccccchhHHHHHHHHHhccccccccccceEEecCcchhHHHHHHHHHccCCCCCc-
Confidence 456667766542 577889999999999999999999999999999999999999999999888877665
Q ss_pred CcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccccchhhhcCChHHHHHHhCcccchhhhhhhhhHh
Q 004569 474 DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLF 553 (744)
Q Consensus 474 ~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~l~~~~gf~~E~~~~~g~~~~~~~~~~~~~~f 553 (744)
+|+|+|||||||++|.|++.+|.++|++||++|.+||||||.+.+...|||++||.+|||.. .+|..|.+.|
T Consensus 89 -----nylfmGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEsrqitqvygfydeclRkyg~a---nvw~~Ftdlf 160 (319)
T KOG0371|consen 89 -----NYLFMGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHESRQITQVYGFYDECLRKYGNA---NVWKYFTDLF 160 (319)
T ss_pred -----ceeeeeeecccccchHHHHHHHHHhhccccceeEEecCchHHHHHHHHHhhHHHHHhhcccc---cchHHhhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999875 7999999999
Q ss_pred hccceeeEEeCcEEEecCCCCCCCCChhhhhhccCCccccCCcceeeeccccCCCCCCCCCCcccCCCCCCceeeCHHHH
Q 004569 554 NWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRV 633 (744)
Q Consensus 554 ~~LPlaa~i~~~il~vHGGi~~~~~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~Fg~~~v 633 (744)
+++|+.|+|+++|||+|||++|++.+++.++.+.|-.+++.++ .+||||||||+. .-||..++||+| +.||.+..
T Consensus 161 dy~P~tali~~~ifc~HGgLspsi~tld~~r~~dr~~evpheg-pmcDlLwsdpdd---r~gwg~sprgag-~tfg~di~ 235 (319)
T KOG0371|consen 161 DYLPLTALIESKIFCLHGGLSPSIDTLDLIRLLDRIQEVPHEG-PMCDLLWSDPDD---RCGWGISPRGAG-YTFGQDIS 235 (319)
T ss_pred hccchHhhhccceeeccCCcCcccchHHHHHHHHHhhcccCCC-ChhheeccCccc---CCCCCCCCCCCC-cccchhhH
Confidence 9999999999999999999999999999999999987887766 678999999985 679999999999 79999999
Q ss_pred HHHHHHcCCeEEEEcccccccceEEecCCeEEEEeccCCCCCCCCCeEEEEEEcCCceEEEEEecCCCC
Q 004569 634 MEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPP 702 (744)
Q Consensus 634 ~~fL~~n~l~~IIRgHe~v~~G~~~~~~~~liTVFSa~nY~~~~~N~gavl~i~~~~~~~~~~~~~~~~ 702 (744)
++|-.+||+++|-|+||.+++||.+.+...++|||||||||+.++|.+|++.++......+..|.|.+-
T Consensus 236 ~~fn~~n~lslisRahqlvm~g~nW~~~~~~vtiFSapnycYrcgn~a~i~e~d~~~~~~f~q~~psp~ 304 (319)
T KOG0371|consen 236 EQFNHKNGLSLISRAHQLVMEGYNWYHLWNVVTIFSAPNYCYRCGNQAAIMERDDTKNYDFLQFDPSPR 304 (319)
T ss_pred HHhhccCCchHhHHHHHHHhcccceeeecceeEEccCCchhhccccHHHHhhhhhccCcceEEecCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999998543
No 16
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=100.00 E-value=3.9e-61 Score=498.65 Aligned_cols=271 Identities=37% Similarity=0.654 Sum_probs=247.7
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCCeeeecCceEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChHH
Q 004569 416 FLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLE 495 (744)
Q Consensus 416 ~l~~~~i~~L~~~a~~il~~ep~ll~l~~pi~VvGDIHG~~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~slE 495 (744)
.|+++..+.|+.++..+|++|++++++++||.|||||||||.||+++|+..|.|... +|+|||||||||.+|+|
T Consensus 60 rl~ee~alrIi~~~a~llr~Eknmi~v~APiTVCGDIHGQf~DLmKLFEVGG~PA~t------~YLFLGDYVDRGyFSiE 133 (517)
T KOG0375|consen 60 RLEEEQALRIINEGAALLRQEKNMIEVEAPITVCGDIHGQFFDLMKLFEVGGSPANT------RYLFLGDYVDRGYFSIE 133 (517)
T ss_pred chhHHHHHHHHHHHHHHHhcCCceEeccCCeeEecccchHHHHHHHHHHccCCcccc------eeEeeccccccceeeee
Confidence 478899999999999999999999999999999999999999999999998877765 89999999999999999
Q ss_pred HHHHHHHhhhhCCCCeEEEecCccccchhhhcCChHHHHHHhCcccchhhhhhhhhHhhccceeeEEeCcEEEecCCCCC
Q 004569 496 TITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGR 575 (744)
Q Consensus 496 vl~lL~~LK~~~P~~v~lLRGNHE~~~l~~~~gf~~E~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHGGi~~ 575 (744)
|+.+|.+||+.||..+++||||||++.+...|.|..||..||.+ .+|+...+.|+.||+||+.++.+||||||++|
T Consensus 134 CvlYLwsLKi~yp~tl~lLRGNHECrHLT~YFTFKqEc~iKYse----~vYdaCmesFd~LPLAAlmNqQflCVHGGlSP 209 (517)
T KOG0375|consen 134 CVLYLWSLKINYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSE----RVYDACMESFDCLPLAALMNQQFLCVHGGLSP 209 (517)
T ss_pred hHHHHHHHhcCCCCeEEEecCCcchhhhHhHhhHHHHHhHhccH----HHHHHHHHHhccchHHHHhcCceEEecCCCCc
Confidence 99999999999999999999999999999999999999999954 69999999999999999999999999999999
Q ss_pred CCCChhhhhhccCCccccCCcceeeeccccCCCCCCC----CCCcccC-CCCCCceeeCHHHHHHHHHHcCCeEEEEccc
Q 004569 576 SINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDS----VEGLRPN-ARGPGLVTFGPDRVMEFCNNNDLQLIVRAHE 650 (744)
Q Consensus 576 ~~~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~----~~g~~~n-~Rg~g~~~Fg~~~v~~fL~~n~l~~IIRgHe 650 (744)
.+.++++|++|.|..+++.-+ .+||||||||.++.+ .+.|.+| .||++ +.|...++.+||+.|||--|||+||
T Consensus 210 Ei~tl~DIr~l~RF~EpPa~G-pmCDLLWsDPlEdfgnek~~e~f~hNsvRGCS-yfysy~A~C~FLq~nnLLSIiRAHE 287 (517)
T KOG0375|consen 210 EIHTLDDIRKLDRFKEPPAFG-PMCDLLWSDPLEDFGNEKTSEHFTHNSVRGCS-YFYSYPAVCEFLQNNNLLSIIRAHE 287 (517)
T ss_pred ccccHHHHHhhhhccCCCccC-cchhhhccChhhhccccccccccccCcccccc-ceechHHHHHHHHhCCchhhhhhhh
Confidence 999999999999999988766 899999999986322 2456666 79998 6799999999999999999999999
Q ss_pred ccccceEEecCC------eEEEEeccCCCCCCCCCeEEEEEEcCCceEEEEEecC
Q 004569 651 CVMDGFERFAQG------HLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHP 699 (744)
Q Consensus 651 ~v~~G~~~~~~~------~liTVFSa~nY~~~~~N~gavl~i~~~~~~~~~~~~~ 699 (744)
.+..||..+... .||||||||||-+.++|+||||..+++. +....|.-
T Consensus 288 AQDaGYRMYrksqttGFPSLiTiFSAPNYLDvYnNKAAvLKYEnNV-MNIRQFnc 341 (517)
T KOG0375|consen 288 AQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNV-MNIRQFNC 341 (517)
T ss_pred hhhhhhhhhhcccccCCchheeeecCCchhhhhccHHHHhhhhccc-ceeeccCC
Confidence 999999877654 5899999999999999999999887653 33444543
No 17
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=100.00 E-value=1e-52 Score=444.89 Aligned_cols=268 Identities=33% Similarity=0.648 Sum_probs=242.3
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCCeeeec----CceEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCC
Q 004569 416 FLDCNEIADLCDSAERIFSSEPSVLQLK----APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQ 491 (744)
Q Consensus 416 ~l~~~~i~~L~~~a~~il~~ep~ll~l~----~pi~VvGDIHG~~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~ 491 (744)
.|.+..+..|+.+|+++|++-|++-+++ ..|.||||+||+++||+-||.+.|+|+.++ .|||.||+||||.
T Consensus 133 ~LH~kYVl~iL~EakK~lkqmPnis~isTs~S~qVTiCGDLHGklDDL~~I~yKNGlPS~~n-----pYvFNGDFVDRGk 207 (631)
T KOG0377|consen 133 RLHPKYVLLILREAKKSLKQMPNISRISTSVSQQVTICGDLHGKLDDLLVILYKNGLPSSSN-----PYVFNGDFVDRGK 207 (631)
T ss_pred hccHHHHHHHHHHHHHHHHhCCCCCccccccccceEEeccccccccceEEEEecCCCCCCCC-----CeeecCchhhccc
Confidence 4678889999999999999999999985 569999999999999999999999999875 7999999999999
Q ss_pred ChHHHHHHHHHhhhhCCCCeEEEecCccccchhhhcCChHHHHHHhCcccchhhhhhhhhHhhccceeeEEeCcEEEecC
Q 004569 492 HSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHG 571 (744)
Q Consensus 492 ~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~l~~~~gf~~E~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHG 571 (744)
+|+|||++|+++-+.||..||+-|||||+.++|..|||..|...||... +..+...+.++|.|||++.+|+.+||+|||
T Consensus 208 ~siEvLmiL~a~~lv~P~~~~LNRGNHED~mmNlRYGF~kEv~~KYk~~-~k~Ilr~leevy~WLPi~tiid~~ilvvHG 286 (631)
T KOG0377|consen 208 RSIEVLMILFALYLVYPNAVHLNRGNHEDHMMNLRYGFIKEVESKYKRH-GKRILRFLEEVYRWLPIGTIIDSRILVVHG 286 (631)
T ss_pred cchhhHHHHHHHHhcCchhhhccCCchHHHHHHHHHhHHHHHHHHhhhc-ccHHHHHHHHHHHhcchhhhcccceEEEec
Confidence 9999999999999999999999999999999999999999999999875 778999999999999999999999999999
Q ss_pred CCCCCCCChhhhhhccCC---------cccc--C----------CcceeeeccccCCCCCCCCCCcccC-CCCCCceeeC
Q 004569 572 GIGRSINHVEQIENLQRP---------ITME--A----------GSIVLMDLLWSDPTENDSVEGLRPN-ARGPGLVTFG 629 (744)
Q Consensus 572 Gi~~~~~~l~~I~~i~Rp---------~~~~--~----------~~~~~~dlLWsDP~~~~~~~g~~~n-~Rg~g~~~Fg 629 (744)
||+.. ++++-|.+|.|- ++.. . +++.+.|+|||||.. ..|..|| .||.| ++||
T Consensus 287 GiSd~-Tdl~ll~kIeR~k~~Svlrpp~ek~~d~e~~s~~vg~dEW~Qi~DImWSDP~~---~~GC~pNt~RGgG-~yFG 361 (631)
T KOG0377|consen 287 GISDS-TDLDLLDKIERGKYVSVLRPPTEKGRDGEKLSKAVGVDEWQQIFDIMWSDPQA---TMGCVPNTLRGGG-CYFG 361 (631)
T ss_pred Ccccc-hhHHHHhhhhccceeEEecCCcccCccCCchhhhcChHHHHHHHHHHhcCccc---ccCCCcccccCCc-ceeC
Confidence 99976 677777776652 2110 0 234678999999986 3688888 79999 6899
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccceEEecCCeEEEEeccCCCCCCCCCeEEEEEEcCCceEEE
Q 004569 630 PDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVP 694 (744)
Q Consensus 630 ~~~v~~fL~~n~l~~IIRgHe~v~~G~~~~~~~~liTVFSa~nY~~~~~N~gavl~i~~~~~~~~ 694 (744)
+|.+.+||++.+++++||+|||.++|||+.++++|+|||||+||...+.|+||++.+.+.+.-.+
T Consensus 362 pDvT~~~Lqk~~l~~liRSHECKpeGyEf~Hd~kvlTiFSASNYYe~GSNrGAYikl~~~~~Phf 426 (631)
T KOG0377|consen 362 PDVTDNFLQKHRLSYLIRSHECKPEGYEFCHDNKVLTIFSASNYYEIGSNRGAYIKLGNQLTPHF 426 (631)
T ss_pred chHHHHHHHHhCceeeeeecccCCCcceeeeCCeEEEEEeccchheecCCCceEEEeCCCCCchH
Confidence 99999999999999999999999999999999999999999999999999999999998776443
No 18
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=100.00 E-value=1.2e-46 Score=409.21 Aligned_cols=277 Identities=39% Similarity=0.677 Sum_probs=251.2
Q ss_pred cCHHHHHHHHHHHHHHHhcCCCeeeecCc----eEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCC
Q 004569 417 LDCNEIADLCDSAERIFSSEPSVLQLKAP----IKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQH 492 (744)
Q Consensus 417 l~~~~i~~L~~~a~~il~~ep~ll~l~~p----i~VvGDIHG~~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~ 492 (744)
+...-...|+..+..+++++|+++++..| +.|+||+||||.||+++|+..|.|+... .|+|.||+||||..
T Consensus 183 L~~k~a~~i~~~~~~~~~~l~~~ve~~~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~-----~ylfngdfv~rgs~ 257 (476)
T KOG0376|consen 183 LPKKYAYSILDLAKTILRKLPSLVEISVPGDVKISVCGDTHGQFYDLLNIFELNGLPSETN-----PYLFNGDFVDRGSW 257 (476)
T ss_pred cccccceeeHHHHhhHHhcCCcceEeecCCCceEEecCCccccccchhhhHhhcCCCCCcc-----cccccCceeeeccc
Confidence 44455678999999999999999998754 8999999999999999999999998764 79999999999999
Q ss_pred hHHHHHHHHHhhhhCCCCeEEEecCccccchhhhcCChHHHHHHhCcccchhhhhhhhhHhhccceeeEEeCcEEEecCC
Q 004569 493 SLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGG 572 (744)
Q Consensus 493 slEvl~lL~~LK~~~P~~v~lLRGNHE~~~l~~~~gf~~E~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHGG 572 (744)
|.|++..+++.|+.+|+++|++|||||+..++..|||.+|+..+|.+ ..+..+.++|.+||++-+|+++++.+|||
T Consensus 258 s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyte----~~~~~f~~~f~~LPl~~~i~~~~~~~hgg 333 (476)
T KOG0376|consen 258 SVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVKAKYTE----EMFNLFSEVFIWLPLAHLINNKVLVMHGG 333 (476)
T ss_pred ceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchhhhhHH----HHHHhhhhhhccccchhhhcCceEEEecC
Confidence 99999999999999999999999999999999999999999999865 57777789999999999999999999999
Q ss_pred CCC-CCCChhhhhhccCCccccCCcceeeeccccCCCCCCCCCCcccCCCCCCceeeCHHHHHHHHHHcCCeEEEEcccc
Q 004569 573 IGR-SINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHEC 651 (744)
Q Consensus 573 i~~-~~~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~Fg~~~v~~fL~~n~l~~IIRgHe~ 651 (744)
+.. .-.++++|++|.|+-.++. ...++++|||||.. ..|..++.||.| ..||++++++||+.|++++||||||+
T Consensus 334 lf~~~~v~l~d~r~i~r~~~~~~-~~~~~~~lws~pq~---~~g~s~S~r~~g-~~fG~d~t~~f~~~n~l~~i~rshe~ 408 (476)
T KOG0376|consen 334 LFSPDGVTLEDFRNIDRFEQPPE-EGLMCELLWSDPQP---ANGRSPSKRGVG-LQFGPDVTERFLQDNNLDKIIRSHEV 408 (476)
T ss_pred cCCCCCccHHHHHhhhhccCCcc-cccccccccCCCcc---ccCCCccccCce-eeeCCCchhhHHhhcchHHHhhcccc
Confidence 965 4468999999999955444 44899999999986 478999999999 68999999999999999999999999
Q ss_pred cccceEEecCCeEEEEeccCCCCCCCCCeEEEEEEc-CCceEEEEEecCCCCCCCCC
Q 004569 652 VMDGFERFAQGHLITLFSATNYCGTANNAGAILVLG-RDLVVVPKLIHPLPPAISSP 707 (744)
Q Consensus 652 v~~G~~~~~~~~liTVFSa~nY~~~~~N~gavl~i~-~~~~~~~~~~~~~~~~~~~~ 707 (744)
.+.||++.++|+|+|||||||||...+|.||++.++ ++++..+..|.++|-....|
T Consensus 409 ~d~gy~~eh~g~l~tvfsapnycd~~~n~ga~i~~~~~~~~p~~~~~e~vp~~~~~~ 465 (476)
T KOG0376|consen 409 KDEGYEVEHSGKLITVFSAPNYCDQMGNKGAFIHLEPDDLTPNFYTFEAVPHPDVKP 465 (476)
T ss_pred CCCceeeecCCcEEEEecCcchhhhcCCcceEEEecCCCCccceeecccCCCCCCCC
Confidence 999999999999999999999999999999999998 78888999998876554333
No 19
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=99.98 E-value=1.5e-31 Score=274.43 Aligned_cols=218 Identities=47% Similarity=0.757 Sum_probs=175.0
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccccchhhh
Q 004569 447 KIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINAL 526 (744)
Q Consensus 447 ~VvGDIHG~~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~l~~~ 526 (744)
+|||||||++.+|.++|+..+.++.+ ++||||||||||+.+.|++.+++.++.. |.++++||||||.+.++..
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~~~~d------~li~lGD~vdrg~~~~~~l~~l~~~~~~-~~~~~~l~GNHe~~~~~~~ 73 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGFPPND------KLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVILLRGNHEDMLLNFL 73 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCCCCCC------EEEEECCEeCCCCCcHHHHHHHHHhcCC-CCcEEEEccCchhhhhhhh
Confidence 58999999999999999999886555 8999999999999999999999999887 8999999999999998877
Q ss_pred cCChHHHH-----HHhCcccchhhhhhhhhHhhccceeeEEeC-cEEEecCCCCCCCCChhhhhhccCCccccCCcceee
Q 004569 527 FGFRIECI-----ERMGERDGIWAWHRINRLFNWLPLAALIEK-KIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLM 600 (744)
Q Consensus 527 ~gf~~E~~-----~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~-~il~vHGGi~~~~~~l~~I~~i~Rp~~~~~~~~~~~ 600 (744)
+++..+.. ..........++..+..+|..||+++.++. +++|||||+++.....+++. .. ...+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vHag~~~~~~~~~~~~------~~-~~~~~~~ 146 (225)
T cd00144 74 YGFYDEDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVLCVHGGLSPGLPLEEQIK------EE-PEDQLPE 146 (225)
T ss_pred cCCcchhhccchhHHHHHhhCHHHHHHHHHHHHhCcHheEeCCCeEEEEeCCCCCccchHHhhh------cC-cccccce
Confidence 77654421 001111234677888999999999999976 99999999999876555444 11 1223678
Q ss_pred eccccCCCCCCCCCCcccCCCCCCceeeCHHHHHHHHHHcCCeEEEEcccccccceEEecCCeEEEEeccCCCCCCCCCe
Q 004569 601 DLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNA 680 (744)
Q Consensus 601 dlLWsDP~~~~~~~g~~~n~Rg~g~~~Fg~~~v~~fL~~n~l~~IIRgHe~v~~G~~~~~~~~liTVFSa~nY~~~~~N~ 680 (744)
+++|++|.... .....+.|+. |+++.+.|++.++.+.|||||+++..|+.....+++|||+|++.|++..+|.
T Consensus 147 ~~lw~r~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~ii~GHt~~~~~~~~~~~~~~i~IDtg~~~~~~~~~~ 219 (225)
T cd00144 147 DLLWSDPLELP--GGFGSSRRGG-----GPDAVEWFLKKNGLKLIVRGHTPVEEGYEFGHDGNLITIDSGCNYCGGGGNK 219 (225)
T ss_pred eeeecCCCCCC--CCCcCCCCCC-----CHHHHHHHHHHCCCeEEEEcCccccCccEEcCCCCEEEEecCCcccCCCCcc
Confidence 99999997532 2222334433 8999999999999999999999999998767789999999999998877777
Q ss_pred EEEEE
Q 004569 681 GAILV 685 (744)
Q Consensus 681 gavl~ 685 (744)
.+++.
T Consensus 220 l~~~~ 224 (225)
T cd00144 220 LAALV 224 (225)
T ss_pred EEEEe
Confidence 76654
No 20
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=99.89 E-value=1e-22 Score=207.94 Aligned_cols=185 Identities=21% Similarity=0.355 Sum_probs=131.0
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCCcc--eeeEEeeccccCCCCChHHHHHHHHHhhhh---CCCCeEEEecCcccc
Q 004569 447 KIFGDLHGQFGDLMRLFDEYGSPSTAGDIA--YIDYLFLGDYVDRGQHSLETITLLLALKVE---YPNNVHLIRGNHEAA 521 (744)
Q Consensus 447 ~VvGDIHG~~~dL~~il~~~g~p~~~~~~~--~~~~vFLGDyVDRG~~slEvl~lL~~LK~~---~P~~v~lLRGNHE~~ 521 (744)
+||||||||+..|.++|+..++.+....+. ...+||+|||||||+++.||+.+|+.|+.+ .+.++++|+||||.+
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 589999999999999999988643221111 128999999999999999999999999865 457899999999999
Q ss_pred chhhhcCChHH-HHHHhCcc--cchhhh---hhhhhHhhccceeeEEeCcEEEecCCCCCCCCChhhhhhccCCccccCC
Q 004569 522 DINALFGFRIE-CIERMGER--DGIWAW---HRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAG 595 (744)
Q Consensus 522 ~l~~~~gf~~E-~~~~~g~~--~~~~~~---~~~~~~f~~LPlaa~i~~~il~vHGGi~~~~~~l~~I~~i~Rp~~~~~~ 595 (744)
.++..+.+... ........ ....++ ..+.+++..+|+...++ ++++||||++|
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lP~~~~~~-~~~fvHag~~~-------------------- 139 (208)
T cd07425 81 NLCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRWLRSKPVIVKVN-DTLFVHGGLGP-------------------- 139 (208)
T ss_pred HHcchhccCChhHHHHHHhhhhhHHHhcCCccHHHHHHHhCCeEEEEC-CEEEEeCCcHH--------------------
Confidence 98755433211 11111100 011122 34478899999999885 68899999932
Q ss_pred cceeeeccccCCCCCCCCCCcccCCCCCCceeeCHHHHHHHHHHcCCeEEEEcccccccceEEecCCeEEEEecc
Q 004569 596 SIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSA 670 (744)
Q Consensus 596 ~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~Fg~~~v~~fL~~n~l~~IIRgHe~v~~G~~~~~~~~liTVFSa 670 (744)
+|+..-.. +.... .=+.+.+.++|+.++.++||+||+.++.|.-..++|++|+|.+.
T Consensus 140 -------~w~r~y~~-------~~~~~----~~~~~~~~~~l~~~~~~~iv~GHTh~~~~~~~~~~g~~i~ID~g 196 (208)
T cd07425 140 -------LWYRGYSK-------ETSDK----ECAAAHLDKVLERLGAKRMVVGHTPQEGGIVTFCGGKVIRIDVG 196 (208)
T ss_pred -------HHhhHhhh-------hhhhc----cchHHHHHHHHHHcCCCeEEEcCeeeecCceEEECCEEEEEeCC
Confidence 23211100 00000 00225788999999999999999999888766899999999874
No 21
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=99.88 E-value=4.3e-22 Score=208.37 Aligned_cols=131 Identities=22% Similarity=0.364 Sum_probs=99.0
Q ss_pred CceEEEecCCCCHHHHHHHHHHhCCCCCCCC---cceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccc
Q 004569 444 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGD---IAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEA 520 (744)
Q Consensus 444 ~pi~VvGDIHG~~~dL~~il~~~g~p~~~~~---~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~ 520 (744)
++++||||||||++.|.++|+++++....+. ....++||||||||||++|+|||.+|+.+. .+.++++||||||.
T Consensus 1 ~~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~--~~~~~~~l~GNHE~ 78 (245)
T PRK13625 1 MKYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELV--EKKAAYYVPGNHCN 78 (245)
T ss_pred CceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHh--hCCCEEEEeCccHH
Confidence 4689999999999999999999887411100 001279999999999999999999999884 45689999999999
Q ss_pred cchhhhcCC-------hHHHHHHhCcc---cchhhhhhhhhHhhccceeeEEe-CcEEEecCCCCCC
Q 004569 521 ADINALFGF-------RIECIERMGER---DGIWAWHRINRLFNWLPLAALIE-KKIICMHGGIGRS 576 (744)
Q Consensus 521 ~~l~~~~gf-------~~E~~~~~g~~---~~~~~~~~~~~~f~~LPlaa~i~-~~il~vHGGi~~~ 576 (744)
++++...+- ..+....|... ....+++.+.++|+.||++.+++ ++++|||||+.|.
T Consensus 79 ~~l~~~~~~~~~~~~gg~~tl~~~~~~~~~~~~~~~~~~~~~~~~lPl~~~~~~~~~~~vHAG~~~~ 145 (245)
T PRK13625 79 KLYRFFLGRNVTIAHGLETTVAEYEALPSHKQNMIKEKFITLYEQAPLYHILDEGRLVVAHAGIRQD 145 (245)
T ss_pred HHHHHHhCCCccccchhHhHHHHHhccChhhHHHHHHHHHHHHHhCCceEEEeCCCEEEEECCCChH
Confidence 887654321 12223333221 12346778899999999998774 6899999999876
No 22
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=99.84 E-value=9.6e-21 Score=196.82 Aligned_cols=130 Identities=24% Similarity=0.415 Sum_probs=99.2
Q ss_pred CceEEEecCCCCHHHHHHHHHHhCCCCCCC----CcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCcc
Q 004569 444 APIKIFGDLHGQFGDLMRLFDEYGSPSTAG----DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHE 519 (744)
Q Consensus 444 ~pi~VvGDIHG~~~dL~~il~~~g~p~~~~----~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE 519 (744)
+||.||||||||+..|.++|+.+++...+. .....+++|||||||||++|.|||.+|+.++.. .++++||||||
T Consensus 1 ~~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~~--~~~~~v~GNHE 78 (234)
T cd07423 1 GPFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVAA--GAALCVPGNHD 78 (234)
T ss_pred CCeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhhC--CcEEEEECCcH
Confidence 489999999999999999999998764320 000127999999999999999999999998754 57999999999
Q ss_pred ccchhhhcCCh-------HHHHHHhCcccchhhhhhhhhHhhccceeeEEe-CcEEEecCCCCCC
Q 004569 520 AADINALFGFR-------IECIERMGERDGIWAWHRINRLFNWLPLAALIE-KKIICMHGGIGRS 576 (744)
Q Consensus 520 ~~~l~~~~gf~-------~E~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~-~~il~vHGGi~~~ 576 (744)
.++++...+.. .+....|... ...+.+.+.++|+.||+...++ ++++|||||+++.
T Consensus 79 ~~l~~~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHag~~~~ 142 (234)
T cd07423 79 NKLYRKLQGRNVKITHGLEETVAQLEAE-SEEFKEEVIEFYESLPSHLVLDEGKLVVAHAGIKEE 142 (234)
T ss_pred HHHHHHhcCCCccccCcccchHHHHhhc-cHHHHHHHHHHHHhCCcEEEeCCCcEEEEeCCCChH
Confidence 98877543311 1222333221 2346678889999999998775 5799999998864
No 23
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=99.84 E-value=2.9e-20 Score=191.82 Aligned_cols=123 Identities=23% Similarity=0.302 Sum_probs=92.4
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCC--cceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccccchh
Q 004569 447 KIFGDLHGQFGDLMRLFDEYGSPSTAGD--IAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADIN 524 (744)
Q Consensus 447 ~VvGDIHG~~~dL~~il~~~g~p~~~~~--~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~l~ 524 (744)
+||||||||++.|.++|+.+++....+. ....++|||||||||||+|.|||.+|+.++.. .++++|+||||.+++.
T Consensus 2 ~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~~--~~~~~l~GNHE~~ll~ 79 (222)
T cd07413 2 DFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVDA--GHALAVMGNHEFNAIA 79 (222)
T ss_pred EEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhcC--CCEEEEEccCcHHHHH
Confidence 6999999999999999999877522100 00118999999999999999999999998643 5899999999999876
Q ss_pred hhcCC------------h-----HHHHHHhCcccchhhhhhhhhHhhccceeeEEeCcEEEecCCCC
Q 004569 525 ALFGF------------R-----IECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIG 574 (744)
Q Consensus 525 ~~~gf------------~-----~E~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHGGi~ 574 (744)
...+- . .+..+.++. ....+..+.++|+.||+.... ++++|||||+.
T Consensus 80 ~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~lP~~~~~-~~~~~VHAg~~ 143 (222)
T cd07413 80 WHTKDPSGGEWLRAHSKKNLRQHQAFLEQFRE--HSEEHKDWLEWFKTLPLFLDL-GGVRVVHACWD 143 (222)
T ss_pred hhhCCcccchhhhcCCCcccccHHHHHHHHhc--cchhHHHHHHHHhcCCcEEEE-CCEEEEECCcC
Confidence 43221 0 112222221 124567788999999999876 67999999986
No 24
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=99.84 E-value=3.5e-21 Score=202.03 Aligned_cols=128 Identities=23% Similarity=0.376 Sum_probs=100.0
Q ss_pred eEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccccchhh
Q 004569 446 IKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINA 525 (744)
Q Consensus 446 i~VvGDIHG~~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~l~~ 525 (744)
++||||||||+..|.++|+.+++.+..+ +++||||||||||+|+|||.+|+.++ .++++|+||||.+.+..
T Consensus 1 ~yvIGDIHG~~~~L~~LL~~i~~~~~~D-----~Li~lGDlVdRGp~s~evl~~l~~l~----~~v~~VlGNHD~~ll~~ 71 (257)
T cd07422 1 TYAIGDIQGCYDELQRLLEKINFDPAKD-----RLWLVGDLVNRGPDSLETLRFVKSLG----DSAKTVLGNHDLHLLAV 71 (257)
T ss_pred CEEEECCCCCHHHHHHHHHhcCCCCCCC-----EEEEecCcCCCCcCHHHHHHHHHhcC----CCeEEEcCCchHHHHHH
Confidence 5899999999999999999998764332 89999999999999999999999986 58999999999998887
Q ss_pred hcCChHH----HHHHhCcccchhhhhhhhhHhhccceeeEEeC-cEEEecCCCCCCCCChhhhhhc
Q 004569 526 LFGFRIE----CIERMGERDGIWAWHRINRLFNWLPLAALIEK-KIICMHGGIGRSINHVEQIENL 586 (744)
Q Consensus 526 ~~gf~~E----~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~-~il~vHGGi~~~~~~l~~I~~i 586 (744)
.+|+... ....+ ........+.+++..+|+...+++ ++++|||||+|.+ ++++...+
T Consensus 72 ~~g~~~~~~~~t~~~~---l~~~~~~~~~~wLr~lPl~~~~~~~~~l~vHAGi~p~w-~~~~~~~~ 133 (257)
T cd07422 72 AAGIKKPKKKDTLDDI---LNAPDRDELLDWLRHQPLLHRDPELGILMVHAGIPPQW-SIEQALKL 133 (257)
T ss_pred hcCccccccHhHHHHH---HhccchHHHHHHHHhCCCEEEECCccEEEEccCCCCCC-CHHHHHHH
Confidence 6665311 11111 011233567899999999998864 8999999999986 44444433
No 25
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=99.84 E-value=3.1e-20 Score=196.85 Aligned_cols=122 Identities=20% Similarity=0.358 Sum_probs=97.0
Q ss_pred CceEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccccch
Q 004569 444 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 523 (744)
Q Consensus 444 ~pi~VvGDIHG~~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~l 523 (744)
+.++||||||||+..|.++|+.+++.+..+ .++||||||||||+|+||+.+|+.+ +.++++|+||||.+++
T Consensus 1 M~~~vIGDIHG~~~~l~~ll~~~~~~~~~D-----~li~lGDlVdrGp~s~~vl~~l~~l----~~~~~~VlGNHD~~ll 71 (275)
T PRK00166 1 MATYAIGDIQGCYDELQRLLEKIDFDPAKD-----TLWLVGDLVNRGPDSLEVLRFVKSL----GDSAVTVLGNHDLHLL 71 (275)
T ss_pred CcEEEEEccCCCHHHHHHHHHhcCCCCCCC-----EEEEeCCccCCCcCHHHHHHHHHhc----CCCeEEEecChhHHHH
Confidence 468999999999999999999988743321 7999999999999999999999987 3579999999999988
Q ss_pred hhhcCChHH----HHHHhCcccchhhhhhhhhHhhccceeeEE-eCcEEEecCCCCCCC
Q 004569 524 NALFGFRIE----CIERMGERDGIWAWHRINRLFNWLPLAALI-EKKIICMHGGIGRSI 577 (744)
Q Consensus 524 ~~~~gf~~E----~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i-~~~il~vHGGi~~~~ 577 (744)
...+|+... ....+- .....+.+.+++..||+...+ ++++++||||++|.+
T Consensus 72 ~~~~g~~~~~~~~~l~~~l---~~~~~~~~~~~L~~lPl~~~~~~~~~l~vHAGi~p~~ 127 (275)
T PRK00166 72 AVAAGIKRNKKKDTLDPIL---EAPDRDELLDWLRHQPLLHVDEELGLVMVHAGIPPQW 127 (275)
T ss_pred HhhcCCccccchhHHHHHH---ccccHHHHHHHHHCCCcEEEECCCCEEEEccCCCCCC
Confidence 877765321 111111 112345678899999998886 568999999999986
No 26
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=99.82 E-value=6.2e-20 Score=193.19 Aligned_cols=128 Identities=23% Similarity=0.342 Sum_probs=101.6
Q ss_pred CceEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccccch
Q 004569 444 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 523 (744)
Q Consensus 444 ~pi~VvGDIHG~~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~l 523 (744)
+.++||||||||++.|.++|+++++.+..+ +++||||||||||+|+|||.++.+++ .++++|+||||.+++
T Consensus 1 m~~YvIGDIHGc~daL~~LL~~i~f~~~~D-----~l~~lGDlVdRGP~slevL~~l~~l~----~~~~~VlGNHD~~lL 71 (279)
T TIGR00668 1 MATYLIGDLHGCYDELQALLERVEFDPGQD-----TLWLTGDLVARGPGSLEVLRYVKSLG----DAVRLVLGNHDLHLL 71 (279)
T ss_pred CcEEEEEcccCCHHHHHHHHHHhCcCCCCC-----EEEEeCCccCCCCCHHHHHHHHHhcC----CCeEEEEChhHHHHH
Confidence 468999999999999999999998764432 79999999999999999999999874 568899999999999
Q ss_pred hhhcCCh-----HHHHHHhCcccchhhhhhhhhHhhccceeeEEe-CcEEEecCCCCCCCCChhhhhh
Q 004569 524 NALFGFR-----IECIERMGERDGIWAWHRINRLFNWLPLAALIE-KKIICMHGGIGRSINHVEQIEN 585 (744)
Q Consensus 524 ~~~~gf~-----~E~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~-~~il~vHGGi~~~~~~l~~I~~ 585 (744)
...+|+. +.....+ .......+.+++..+|+....+ .++++|||||+|.+ ++++...
T Consensus 72 ~~~~g~~~~~~~d~l~~~l----~a~~~~ell~wLr~lPl~i~~~~~~~~lVHAGi~P~w-~l~~a~~ 134 (279)
T TIGR00668 72 AVFAGISRNKPKDRLDPLL----EAPDADELLNWLRRQPLLQHDEEKKLVMAHAGITPQW-DLQTAKE 134 (279)
T ss_pred HHhcCCCccCchHHHHHHH----HccCHHHHHHHHHcCCcEEEeCCCCEEEEecCCCCCC-cHHHHHH
Confidence 8877763 1221112 1234567889999999997664 47999999999986 3444443
No 27
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=99.80 E-value=1.9e-18 Score=182.16 Aligned_cols=159 Identities=26% Similarity=0.328 Sum_probs=108.3
Q ss_pred ceEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCC-CeEEEecCccccch
Q 004569 445 PIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPN-NVHLIRGNHEAADI 523 (744)
Q Consensus 445 pi~VvGDIHG~~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~-~v~lLRGNHE~~~l 523 (744)
++++||||||++..|.++|+.+.............+||||||||||++|.||+.+|++++..+|. ++++|+||||.+++
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~~~l 82 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDFAFA 82 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChHHHH
Confidence 68999999999999999998764221100001126999999999999999999999999999876 68999999998876
Q ss_pred hhhcC---------Ch------------------------------------------------------HHHHHHhCcc
Q 004569 524 NALFG---------FR------------------------------------------------------IECIERMGER 540 (744)
Q Consensus 524 ~~~~g---------f~------------------------------------------------------~E~~~~~g~~ 540 (744)
..... |. .+....||-.
T Consensus 83 ~fL~~~p~~~d~~~f~~~w~~~~~~~e~~~~~~~~~~~~~h~~g~~W~~~~~~~~~~~~~~~~~~~~~gg~~Tl~SYGv~ 162 (304)
T cd07421 83 AFLGVLPRPSDGSEFKSTWKEYEKNEEREGWYKGEGFENMHLQGRRWAGKMKVTFNTVRGEPYKGSIYDARPTFESYGVP 162 (304)
T ss_pred hHhhcCCCccchhhhhhhhccccccccccccccccccccccccccchhhhccccccccccccccccccCcHHHHHHcCCC
Confidence 53321 00 1122333322
Q ss_pred cc-----hhhhhhhhhHhhccceeeEEeCcE-------------EEecCCCCCCCCChhhhhhccCCccccCCcceeeec
Q 004569 541 DG-----IWAWHRINRLFNWLPLAALIEKKI-------------ICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDL 602 (744)
Q Consensus 541 ~~-----~~~~~~~~~~f~~LPlaa~i~~~i-------------l~vHGGi~~~~~~l~~I~~i~Rp~~~~~~~~~~~dl 602 (744)
.+ ..+-....+|+..||+.... +.+ +|||||+-|.+.--+|.+.+..- +....-.|+
T Consensus 163 ~~~~~l~~avP~~H~~fl~~l~~~~~~-~~~~~~~~~g~~~~~lifVHAGlrPg~pLe~Q~~~L~~~----d~~~p~~~~ 237 (304)
T cd07421 163 HGSSDLIKAVPEEHKKFLRNLVWVHEE-DDVCIETEEGLKHCKLIAVHAGLEKSNSVEEQLKLLRTK----DTSIPKIAP 237 (304)
T ss_pred cchHHHHHhCCHHHHHHHHhCCceEEe-CcccccccccccccceEEEEcccCCCCChHHhhhhhhcc----ccccccccc
Confidence 11 11224567899999998775 334 99999999997655666654411 111123478
Q ss_pred cccCCC
Q 004569 603 LWSDPT 608 (744)
Q Consensus 603 LWsDP~ 608 (744)
||....
T Consensus 238 l~~R~~ 243 (304)
T cd07421 238 LSGRKN 243 (304)
T ss_pred cccchh
Confidence 888664
No 28
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=99.80 E-value=2.9e-19 Score=183.88 Aligned_cols=120 Identities=26% Similarity=0.338 Sum_probs=90.3
Q ss_pred CceEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccccch
Q 004569 444 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 523 (744)
Q Consensus 444 ~pi~VvGDIHG~~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~l 523 (744)
++++||||||||+..|+++|+.+++.+..+ +++||||||||||+|.|||.+|.. .++++|+||||.+.+
T Consensus 17 ~ri~vigDIHG~~~~L~~lL~~i~~~~~~D-----~li~lGDlvDrGp~s~~vl~~l~~------~~~~~v~GNHE~~~l 85 (218)
T PRK11439 17 RHIWLVGDIHGCFEQLMRKLRHCRFDPWRD-----LLISVGDLIDRGPQSLRCLQLLEE------HWVRAVRGNHEQMAL 85 (218)
T ss_pred CeEEEEEcccCCHHHHHHHHHhcCCCcccC-----EEEEcCcccCCCcCHHHHHHHHHc------CCceEeeCchHHHHH
Confidence 489999999999999999999998753321 799999999999999999999976 368899999999988
Q ss_pred hhhcCChHHHHHHhCcc-------cchhhhhhhhhHhhccceeeEEe---CcEEEecCCCC
Q 004569 524 NALFGFRIECIERMGER-------DGIWAWHRINRLFNWLPLAALIE---KKIICMHGGIG 574 (744)
Q Consensus 524 ~~~~gf~~E~~~~~g~~-------~~~~~~~~~~~~f~~LPlaa~i~---~~il~vHGGi~ 574 (744)
+...+-....+...|.. .....+..+.++++.||+...++ +++++||||++
T Consensus 86 ~~~~~~~~~~w~~~gg~~~~~l~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~vHAg~p 146 (218)
T PRK11439 86 DALASQQMSLWLMNGGDWFIALTDNQQKQAKTLLEKCQRLPFILEVHCRTGKHVIAHADYP 146 (218)
T ss_pred HHHHCCccchhhhCCChhhhhcchhhhHHHHHHHHHHhcCCcEEEeeccCCCEEEEeCCCC
Confidence 75432211111112110 11234456668999999998764 57999999984
No 29
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.79 E-value=7e-19 Score=179.49 Aligned_cols=147 Identities=26% Similarity=0.345 Sum_probs=105.1
Q ss_pred CceEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccccch
Q 004569 444 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 523 (744)
Q Consensus 444 ~pi~VvGDIHG~~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~l 523 (744)
++++|||||||++..|.++++..++....+ .++|+|||||||+++.|++.+|.. ..+++|+||||.+.+
T Consensus 1 ~ri~~isDiHg~~~~l~~~l~~~~~~~~~d-----~~~~~GD~v~~g~~~~~~~~~l~~------~~~~~v~GNhe~~~~ 69 (207)
T cd07424 1 GRDFVVGDIHGHYSLLQKALDAVGFDPARD-----RLISVGDLIDRGPESLACLELLLE------PWFHAVRGNHEQMAI 69 (207)
T ss_pred CCEEEEECCCCCHHHHHHHHHHcCCCCCCC-----EEEEeCCcccCCCCHHHHHHHHhc------CCEEEeECCChHHHH
Confidence 478999999999999999999987643221 799999999999999999999876 368999999999998
Q ss_pred hhhcC--ChHHHHHHhCccc-----chhhhhhhhhHhhccceeeEEe---CcEEEecCCCCCCCCChhhhhhccCCcccc
Q 004569 524 NALFG--FRIECIERMGERD-----GIWAWHRINRLFNWLPLAALIE---KKIICMHGGIGRSINHVEQIENLQRPITME 593 (744)
Q Consensus 524 ~~~~g--f~~E~~~~~g~~~-----~~~~~~~~~~~f~~LPlaa~i~---~~il~vHGGi~~~~~~l~~I~~i~Rp~~~~ 593 (744)
....+ +..+.+.+++... ...+++.+.++|+.||+...++ .+++|||||+++... ...+.. .+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~i~~~g~~~~~vHag~~~~~~-~~~~~~--~~~~-- 144 (207)
T cd07424 70 DALRAEPLDAVRWLANGGEWFLDLPDEELRRWLALKLEQLPLAIEVETEGGKVGIVHADYPSDDW-SDGVGA--VTLR-- 144 (207)
T ss_pred hHhhCCCcchhHHHhcCCeehhhcChHHHHHHHHHHHHhCCeEEEEEeCCCEEEEECCCCCcchh-hhhhhc--cccC--
Confidence 77654 3333444443321 1124556788999999999875 479999999965431 111100 1111
Q ss_pred CCcceeeeccccCCC
Q 004569 594 AGSIVLMDLLWSDPT 608 (744)
Q Consensus 594 ~~~~~~~dlLWsDP~ 608 (744)
.....+++|++|.
T Consensus 145 --~~~~~~~~w~~~~ 157 (207)
T cd07424 145 --PEDIEELLWSRTR 157 (207)
T ss_pred --cccceeeeeccch
Confidence 1256678998765
No 30
>PHA02239 putative protein phosphatase
Probab=99.78 E-value=1.4e-18 Score=180.51 Aligned_cols=176 Identities=23% Similarity=0.331 Sum_probs=119.9
Q ss_pred CceEEEecCCCCHHHHHHHHHHhCCC--CCCCCcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCcccc
Q 004569 444 APIKIFGDLHGQFGDLMRLFDEYGSP--STAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAA 521 (744)
Q Consensus 444 ~pi~VvGDIHG~~~dL~~il~~~g~p--~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~ 521 (744)
+++++||||||++..|.++++.+... +.+ .+||||||||||++|.|++.+|+.+.. .+.++++|+||||.+
T Consensus 1 m~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d------~li~lGD~iDrG~~s~~v~~~l~~~~~-~~~~~~~l~GNHE~~ 73 (235)
T PHA02239 1 MAIYVVPDIHGEYQKLLTIMDKINNERKPEE------TIVFLGDYVDRGKRSKDVVNYIFDLMS-NDDNVVTLLGNHDDE 73 (235)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHhhcCCCCC------EEEEecCcCCCCCChHHHHHHHHHHhh-cCCCeEEEECCcHHH
Confidence 46899999999999999999987532 222 799999999999999999999999754 456899999999998
Q ss_pred chhhhcCC--------------hHHHHHHhCcccc---------------------------hhhhhhhhhHhhccceee
Q 004569 522 DINALFGF--------------RIECIERMGERDG---------------------------IWAWHRINRLFNWLPLAA 560 (744)
Q Consensus 522 ~l~~~~gf--------------~~E~~~~~g~~~~---------------------------~~~~~~~~~~f~~LPlaa 560 (744)
++....+. ..+....||.... ...+..+..+++.||+..
T Consensus 74 ~l~~~~~~~~~~~~~~~wl~~GG~~Tl~Syg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~lp~~~ 153 (235)
T PHA02239 74 FYNIMENVDRLSIYDIEWLSRYCIETLNSYGVSTVTLKYSSVEENLRNNYDFIKSELKKLKESDDYRKFKILMVNCRKYY 153 (235)
T ss_pred HHHHHhCchhcccchHHHHHcCCHHHHHHcCCCCccchhhHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHhCcceE
Confidence 76543211 1233345542211 112345566889999998
Q ss_pred EEeCcEEEecCCCCCCCCChhhhhhccCCccccCCcceeeeccccCCCCCCCCCCcccCCCCCCceeeCHHHHHHHHHHc
Q 004569 561 LIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNN 640 (744)
Q Consensus 561 ~i~~~il~vHGGi~~~~~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~Fg~~~v~~fL~~n 640 (744)
.. ++++|||||+.|.. |++- +...+|+|... . .+. .
T Consensus 154 ~~-~~~ifVHAGi~p~~-----------~~~~----q~~~~llWiR~-f-------~~~-------~------------- 189 (235)
T PHA02239 154 KE-DKYIFSHSGGVSWK-----------PVEE----QTIDQLIWSRD-F-------QPR-------K------------- 189 (235)
T ss_pred EE-CCEEEEeCCCCCCC-----------Chhh----CCHhHeEEecc-c-------CCC-------C-------------
Confidence 86 67999999998762 2211 13468899964 1 000 0
Q ss_pred CCeEEEEcccccccceEEecCCeEEEEeccC
Q 004569 641 DLQLIVRAHECVMDGFERFAQGHLITLFSAT 671 (744)
Q Consensus 641 ~l~~IIRgHe~v~~G~~~~~~~~liTVFSa~ 671 (744)
.=+.||-||+++..+.... .++.|.|-.-.
T Consensus 190 ~g~~vV~GHTp~~~~~~~~-~~~~I~IDtGa 219 (235)
T PHA02239 190 DGFTYVCGHTPTDSGEVEI-NGDMLMCDVGA 219 (235)
T ss_pred CCcEEEECCCCCCCCcccc-cCCEEEeecCc
Confidence 1136889999987654332 23446666543
No 31
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.74 E-value=7.9e-18 Score=173.27 Aligned_cols=120 Identities=23% Similarity=0.260 Sum_probs=87.0
Q ss_pred CceEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccccch
Q 004569 444 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 523 (744)
Q Consensus 444 ~pi~VvGDIHG~~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~l 523 (744)
++++||||||||+..|.++|+.+.+....+ +++|||||||||++|.||+.+|.+ .+++.||||||.+++
T Consensus 15 ~ri~visDiHg~~~~l~~~l~~~~~~~~~d-----~l~~lGD~vdrG~~~~~~l~~l~~------~~~~~v~GNHE~~~~ 83 (218)
T PRK09968 15 RHIWVVGDIHGEYQLLQSRLHQLSFCPETD-----LLISVGDNIDRGPESLNVLRLLNQ------PWFISVKGNHEAMAL 83 (218)
T ss_pred CeEEEEEeccCCHHHHHHHHHhcCCCCCCC-----EEEECCCCcCCCcCHHHHHHHHhh------CCcEEEECchHHHHH
Confidence 489999999999999999999987543321 799999999999999999999865 378999999999888
Q ss_pred hhhcCChHHHHHHhCcc-------cchhhhhhhhhHhhccceeeEEe---CcEEEecCCCC
Q 004569 524 NALFGFRIECIERMGER-------DGIWAWHRINRLFNWLPLAALIE---KKIICMHGGIG 574 (744)
Q Consensus 524 ~~~~gf~~E~~~~~g~~-------~~~~~~~~~~~~f~~LPlaa~i~---~~il~vHGGi~ 574 (744)
.....-....+...|.. ........+..++..||+...+. +++++||||++
T Consensus 84 ~~~~~~~~~~~~~~gg~~~~~l~~~~~~~~~~~~~~L~~LP~~~~~~~~g~~~~~vHAg~p 144 (218)
T PRK09968 84 DAFETGDGNMWLASGGDWFFDLNDSEQQEATDLLLKFHHLPHIIEITNDNIKYVIAHADYP 144 (218)
T ss_pred HHHhcCChhHHHHccCHHHhcCCHHHHHHHHHHHHHHhcCCeEEEEeeCCCcEEEEeCCCC
Confidence 65421111111111111 00112233456889999998764 47899999984
No 32
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.60 E-value=4.4e-15 Score=169.78 Aligned_cols=149 Identities=24% Similarity=0.320 Sum_probs=118.5
Q ss_pred ceeccCCCCcceeeeeccCCEEEEEEeccCCCCccceeEEEEecCCCCceEEEEcCCCCCCCCceeEEEEECCEEEEEec
Q 004569 18 AEIFVPHLCSVYCCNACAIDVIFCCLFWLLWFLQPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGG 97 (744)
Q Consensus 18 ~~~~~p~~~~~~~~~~~~~~~ifgg~gg~~~~~~~l~D~~~l~~~~~~~W~w~~~~g~~P~pR~~Hsaa~~g~~LyV~GG 97 (744)
.....|.++.+++..+.+ +.||.. ||.......++|+|.|+.. +++|+.....+.+|.+|.+|+++++|++||||||
T Consensus 105 ~~g~~p~~r~g~~~~~~~-~~l~lf-GG~~~~~~~~~~l~~~d~~-t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG 181 (482)
T KOG0379|consen 105 ATGDEPSPRYGHSLSAVG-DKLYLF-GGTDKKYRNLNELHSLDLS-TRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGG 181 (482)
T ss_pred ccCCCCCcccceeEEEEC-CeEEEE-ccccCCCCChhheEeccCC-CCcEEEecCcCCCCCCcccceEEEECCEEEEECC
Confidence 345567777777777666 444442 2244456669999999886 6789888888889999999999999999999999
Q ss_pred cCCCCCccCCCceEEEEECCCCcEEeC--CCCCCCCCCCCCCcccCCCCccccccccccEEEEEECCeEEEEcccc-CCc
Q 004569 98 ALGGGRMVEDSSSVAVLDTAAGVWCDT--KSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLR-GGV 174 (744)
Q Consensus 98 ~~~~~~~~~~~~sv~~yD~~t~~W~~~--~~~~~~~R~g~~~~~~~~~d~~~~~~~R~~Hsa~v~~~~IYV~GG~~-g~~ 174 (744)
.+..+..+++ +|+||+++.+|.++ .+..|+| |+.|+++++++++||+||.+ +..
T Consensus 182 ~~~~~~~~nd---l~i~d~~~~~W~~~~~~g~~P~p--------------------R~gH~~~~~~~~~~v~gG~~~~~~ 238 (482)
T KOG0379|consen 182 IGGTGDSLND---LHIYDLETSTWSELDTQGEAPSP--------------------RYGHAMVVVGNKLLVFGGGDDGDV 238 (482)
T ss_pred ccCcccceee---eeeeccccccceecccCCCCCCC--------------------CCCceEEEECCeEEEEeccccCCc
Confidence 8865545666 99999999999964 4444554 55599999999999999988 778
Q ss_pred cccccccccccccccccc
Q 004569 175 LLDDLLVAEDLAAAETTT 192 (744)
Q Consensus 175 ~l~dv~~~D~~~~~~~~~ 192 (744)
+++|+|++|....+|..+
T Consensus 239 ~l~D~~~ldl~~~~W~~~ 256 (482)
T KOG0379|consen 239 YLNDVHILDLSTWEWKLL 256 (482)
T ss_pred eecceEeeecccceeeec
Confidence 999999999998887744
No 33
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.54 E-value=3e-14 Score=165.72 Aligned_cols=158 Identities=18% Similarity=0.213 Sum_probs=119.4
Q ss_pred cCCCCcceeeeeccCCEEEEEEeccCCCCccceeEEEEecCCCCceEEEEcCCCCCCCCceeEEEEECCEEEEEeccCCC
Q 004569 22 VPHLCSVYCCNACAIDVIFCCLFWLLWFLQPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGG 101 (744)
Q Consensus 22 ~p~~~~~~~~~~~~~~~ifgg~gg~~~~~~~l~D~~~l~~~~~~~W~w~~~~g~~P~pR~~Hsaa~~g~~LyV~GG~~~~ 101 (744)
.|.++. ..+.+...+.||.. ||..+....++.+|.|+...+ + |...+ +|+.+|..|+++++++.||++||.++.
T Consensus 319 m~~~r~-~~~~~~~~~~lYv~-GG~~~~~~~l~~ve~YD~~~~-~--W~~~a-~M~~~R~~~~v~~l~g~iYavGG~dg~ 392 (571)
T KOG4441|consen 319 MPSPRC-RVGVAVLNGKLYVV-GGYDSGSDRLSSVERYDPRTN-Q--WTPVA-PMNTKRSDFGVAVLDGKLYAVGGFDGE 392 (571)
T ss_pred CCcccc-cccEEEECCEEEEE-ccccCCCcccceEEEecCCCC-c--eeccC-CccCccccceeEEECCEEEEEeccccc
Confidence 444444 44445556678885 444435667899999988755 4 55443 799999999999999999999999863
Q ss_pred CCccCCCceEEEEECCCCcEEeCCCCCCCCCC--------------CC------CCcccCCCCcccc--------ccccc
Q 004569 102 GRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRT--------------GR------YSADAAGGDAAVE--------LTRRC 153 (744)
Q Consensus 102 ~~~~~~~~sv~~yD~~t~~W~~~~~~~~~~R~--------------g~------~~~~~~~~d~~~~--------~~~R~ 153 (744)
..++ ++++||+++++|..+++|.. +|. || ....+..|||..+ ..+|.
T Consensus 393 -~~l~---svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~ 467 (571)
T KOG4441|consen 393 -KSLN---SVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS 467 (571)
T ss_pred -cccc---cEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc
Confidence 2344 49999999999999998866 554 22 3356667788777 34899
Q ss_pred cEEEEEECCeEEEEccccCCccccccccccccccccc
Q 004569 154 RHAAAAVGDLIFIYGGLRGGVLLDDLLVAEDLAAAET 190 (744)
Q Consensus 154 ~Hsa~v~~~~IYV~GG~~g~~~l~dv~~~D~~~~~~~ 190 (744)
.|++++++++||++||+++...+..+++||...-+|.
T Consensus 468 ~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 468 GFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWT 504 (571)
T ss_pred cceEEEECCEEEEECCccCCCccceEEEEcCCCCcee
Confidence 9999999999999999998777888888887655544
No 34
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.54 E-value=2.8e-14 Score=163.15 Aligned_cols=151 Identities=23% Similarity=0.269 Sum_probs=114.9
Q ss_pred ceeccCCCCcceeeeeccCCE-EEEEEeccCCCCccceeEEEEecCCCCceEEEEcCCCCCCCCceeEEEEECCEEEEEe
Q 004569 18 AEIFVPHLCSVYCCNACAIDV-IFCCLFWLLWFLQPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSG 96 (744)
Q Consensus 18 ~~~~~p~~~~~~~~~~~~~~~-ifgg~gg~~~~~~~l~D~~~l~~~~~~~W~w~~~~g~~P~pR~~Hsaa~~g~~LyV~G 96 (744)
.....|.++..+.+..+++.+ +|||.+. ......+ |+|.++... ..|....+.+..|.+|++|++++++++||+||
T Consensus 53 ~~~~~p~~R~~hs~~~~~~~~~vfGG~~~-~~~~~~~-dl~~~d~~~-~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfG 129 (482)
T KOG0379|consen 53 VLGVGPIPRAGHSAVLIGNKLYVFGGYGS-GDRLTDL-DLYVLDLES-QLWTKPAATGDEPSPRYGHSLSAVGDKLYLFG 129 (482)
T ss_pred cCCCCcchhhccceeEECCEEEEECCCCC-CCccccc-eeEEeecCC-cccccccccCCCCCcccceeEEEECCeEEEEc
Confidence 345678888888888886555 5554221 1111122 799988863 45666666688999999999999999999999
Q ss_pred ccCCCCCccCCCceEEEEECCCCcEEeCCC--CCCCCCCCCCCcccCCCCccccccccccEEEEEECCeEEEEccccCCc
Q 004569 97 GALGGGRMVEDSSSVAVLDTAAGVWCDTKS--VVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRGGV 174 (744)
Q Consensus 97 G~~~~~~~~~~~~sv~~yD~~t~~W~~~~~--~~~~~R~g~~~~~~~~~d~~~~~~~R~~Hsa~v~~~~IYV~GG~~g~~ 174 (744)
|.+.....+++ ++.||+.|.+|..+.. .+|++ |.+|++++++.+||||||.+...
T Consensus 130 G~~~~~~~~~~---l~~~d~~t~~W~~l~~~~~~P~~--------------------r~~Hs~~~~g~~l~vfGG~~~~~ 186 (482)
T KOG0379|consen 130 GTDKKYRNLNE---LHSLDLSTRTWSLLSPTGDPPPP--------------------RAGHSATVVGTKLVVFGGIGGTG 186 (482)
T ss_pred cccCCCCChhh---eEeccCCCCcEEEecCcCCCCCC--------------------cccceEEEECCEEEEECCccCcc
Confidence 99863444555 9999999999995433 34554 44499999999999999987766
Q ss_pred -cccccccccccccccccccc
Q 004569 175 -LLDDLLVAEDLAAAETTTAA 194 (744)
Q Consensus 175 -~l~dv~~~D~~~~~~~~~~~ 194 (744)
.++|+|+||.....|.....
T Consensus 187 ~~~ndl~i~d~~~~~W~~~~~ 207 (482)
T KOG0379|consen 187 DSLNDLHIYDLETSTWSELDT 207 (482)
T ss_pred cceeeeeeeccccccceeccc
Confidence 89999999999888887644
No 35
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.53 E-value=1.5e-13 Score=149.20 Aligned_cols=140 Identities=12% Similarity=0.127 Sum_probs=102.0
Q ss_pred ccCCCCcceeeeeccCCEEEEEEeccCCCCccceeEEEEecCCCCce--EEEEcCCCCCCCCceeEEEEECCEEEEEecc
Q 004569 21 FVPHLCSVYCCNACAIDVIFCCLFWLLWFLQPLASAYGLAKHRDGRW--EWAIAPGVSPSPRYQHAAVFVNARLHVSGGA 98 (744)
Q Consensus 21 ~~p~~~~~~~~~~~~~~~ifgg~gg~~~~~~~l~D~~~l~~~~~~~W--~w~~~~g~~P~pR~~Hsaa~~g~~LyV~GG~ 98 (744)
..|.++...++... .+.||+. ||.. ....++++|.|+.. ...| .|...+ ++|.+|..|++++++++|||+||.
T Consensus 58 ~lp~~r~~~~~~~~-~~~lyvi-GG~~-~~~~~~~v~~~d~~-~~~w~~~~~~~~-~lp~~~~~~~~~~~~~~iYv~GG~ 132 (323)
T TIGR03548 58 QLPYEAAYGASVSV-ENGIYYI-GGSN-SSERFSSVYRITLD-ESKEELICETIG-NLPFTFENGSACYKDGTLYVGGGN 132 (323)
T ss_pred cCCccccceEEEEE-CCEEEEE-cCCC-CCCCceeEEEEEEc-CCceeeeeeEcC-CCCcCccCceEEEECCEEEEEeCc
Confidence 35666665555444 5566664 3332 34468899998776 3466 466654 789999999999999999999997
Q ss_pred CCCCCccCCCceEEEEECCCCcEEeCCCCCCCCCCCCCCcccCCCCccccccccccEEEEEECCeEEEEccccCCccccc
Q 004569 99 LGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRGGVLLDD 178 (744)
Q Consensus 99 ~~~~~~~~~~~sv~~yD~~t~~W~~~~~~~~~~R~g~~~~~~~~~d~~~~~~~R~~Hsa~v~~~~IYV~GG~~g~~~l~d 178 (744)
... ...+ ++++||+.+++|..+++++..+ |..|++++++++|||+||.++.. ..+
T Consensus 133 ~~~-~~~~---~v~~yd~~~~~W~~~~~~p~~~--------------------r~~~~~~~~~~~iYv~GG~~~~~-~~~ 187 (323)
T TIGR03548 133 RNG-KPSN---KSYLFNLETQEWFELPDFPGEP--------------------RVQPVCVKLQNELYVFGGGSNIA-YTD 187 (323)
T ss_pred CCC-ccCc---eEEEEcCCCCCeeECCCCCCCC--------------------CCcceEEEECCEEEEEcCCCCcc-ccc
Confidence 542 2344 4999999999999988775443 55599999999999999987543 457
Q ss_pred cccccccccccc
Q 004569 179 LLVAEDLAAAET 190 (744)
Q Consensus 179 v~~~D~~~~~~~ 190 (744)
+++||...-.|.
T Consensus 188 ~~~yd~~~~~W~ 199 (323)
T TIGR03548 188 GYKYSPKKNQWQ 199 (323)
T ss_pred eEEEecCCCeeE
Confidence 888887754443
No 36
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.51 E-value=6.3e-14 Score=150.31 Aligned_cols=157 Identities=17% Similarity=0.247 Sum_probs=121.8
Q ss_pred eeeeceeccCCCCcceeeeeccCCE----EEEEEeccCCCCccceeEEEEecCCCCceEEEEcCCCCCCCCceeEEEEEC
Q 004569 14 SVKIAEIFVPHLCSVYCCNACAIDV----IFCCLFWLLWFLQPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVN 89 (744)
Q Consensus 14 ~~~~~~~~~p~~~~~~~~~~~~~~~----ifgg~gg~~~~~~~l~D~~~l~~~~~~~W~w~~~~g~~P~pR~~Hsaa~~g 89 (744)
++.++..-.|++|...|...+.... ||||-+..+.-....||+|.|+.. ...|+.+..| ..|.||..|.+|++-
T Consensus 54 e~~~e~~~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k-~~eWkk~~sp-n~P~pRsshq~va~~ 131 (521)
T KOG1230|consen 54 EHVVETSVPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTK-KNEWKKVVSP-NAPPPRSSHQAVAVP 131 (521)
T ss_pred ceeeeccCCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEecc-ccceeEeccC-CCcCCCccceeEEec
Confidence 4555666677788888888777433 788866666666788999998876 4589888877 678999999888886
Q ss_pred -CEEEEEeccCCC--CCccCCCceEEEEECCCCcEEeCCC-CCCCCCCCCCCcccCCCCccccccccccEEEEEECCeEE
Q 004569 90 -ARLHVSGGALGG--GRMVEDSSSVAVLDTAAGVWCDTKS-VVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIF 165 (744)
Q Consensus 90 -~~LyV~GG~~~~--~~~~~~~~sv~~yD~~t~~W~~~~~-~~~~~R~g~~~~~~~~~d~~~~~~~R~~Hsa~v~~~~IY 165 (744)
+.+|+|||.... +..+....++|+||..+.+|..+.. -.|+||.| |.+++...+|+
T Consensus 132 s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSG--------------------HRMvawK~~li 191 (521)
T KOG1230|consen 132 SNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSG--------------------HRMVAWKRQLI 191 (521)
T ss_pred cCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCcc--------------------ceeEEeeeeEE
Confidence 889999997532 2224444569999999999997543 24665666 99999999999
Q ss_pred EEccccCC----ccccccccccccccccccc
Q 004569 166 IYGGLRGG----VLLDDLLVAEDLAAAETTT 192 (744)
Q Consensus 166 V~GG~~g~----~~l~dv~~~D~~~~~~~~~ 192 (744)
+|||+... .++|||++||..++.|..-
T Consensus 192 lFGGFhd~nr~y~YyNDvy~FdLdtykW~Kl 222 (521)
T KOG1230|consen 192 LFGGFHDSNRDYIYYNDVYAFDLDTYKWSKL 222 (521)
T ss_pred EEcceecCCCceEEeeeeEEEeccceeeeec
Confidence 99998443 4799999999999988753
No 37
>PLN02153 epithiospecifier protein
Probab=99.50 E-value=3.4e-13 Score=147.66 Aligned_cols=157 Identities=16% Similarity=0.079 Sum_probs=103.2
Q ss_pred EeeeeeceeccCCCCcceeeeeccCCEEEEEEeccCCCCccceeEEEEecCCCCceEEEEcCCCCCCC-CceeEEEEECC
Q 004569 12 LSSVKIAEIFVPHLCSVYCCNACAIDVIFCCLFWLLWFLQPLASAYGLAKHRDGRWEWAIAPGVSPSP-RYQHAAVFVNA 90 (744)
Q Consensus 12 ~~~~~~~~~~~p~~~~~~~~~~~~~~~ifgg~gg~~~~~~~l~D~~~l~~~~~~~W~w~~~~g~~P~p-R~~Hsaa~~g~ 90 (744)
|..+...+...|.++..+++.... +.||+.+|.........+|+|.|+... .+|+.....+..|.+ +.+|+++++++
T Consensus 9 W~~~~~~~~~~P~pR~~h~~~~~~-~~iyv~GG~~~~~~~~~~~~~~yd~~~-~~W~~~~~~~~~p~~~~~~~~~~~~~~ 86 (341)
T PLN02153 9 WIKVEQKGGKGPGPRCSHGIAVVG-DKLYSFGGELKPNEHIDKDLYVFDFNT-HTWSIAPANGDVPRISCLGVRMVAVGT 86 (341)
T ss_pred EEEecCCCCCCCCCCCcceEEEEC-CEEEEECCccCCCCceeCcEEEEECCC-CEEEEcCccCCCCCCccCceEEEEECC
Confidence 444444444467778777766554 456653232222234568999998874 356544332223332 45899999999
Q ss_pred EEEEEeccCCCCCccCCCceEEEEECCCCcEEeCCCCCCCCCCCCCCcccCCCCccccccccccEEEEEECCeEEEEccc
Q 004569 91 RLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGL 170 (744)
Q Consensus 91 ~LyV~GG~~~~~~~~~~~~sv~~yD~~t~~W~~~~~~~~~~R~g~~~~~~~~~d~~~~~~~R~~Hsa~v~~~~IYV~GG~ 170 (744)
+||||||..... .+++ +++||+++++|..++.+.... .+.+|+.|++++++++|||+||.
T Consensus 87 ~iyv~GG~~~~~-~~~~---v~~yd~~t~~W~~~~~~~~~~----------------~p~~R~~~~~~~~~~~iyv~GG~ 146 (341)
T PLN02153 87 KLYIFGGRDEKR-EFSD---FYSYDTVKNEWTFLTKLDEEG----------------GPEARTFHSMASDENHVYVFGGV 146 (341)
T ss_pred EEEEECCCCCCC-ccCc---EEEEECCCCEEEEeccCCCCC----------------CCCCceeeEEEEECCEEEEECCc
Confidence 999999986532 3444 999999999999877652100 01246779999999999999998
Q ss_pred cCC------ccccccccccccccccc
Q 004569 171 RGG------VLLDDLLVAEDLAAAET 190 (744)
Q Consensus 171 ~g~------~~l~dv~~~D~~~~~~~ 190 (744)
+.. ..++++++||...-.|.
T Consensus 147 ~~~~~~~~~~~~~~v~~yd~~~~~W~ 172 (341)
T PLN02153 147 SKGGLMKTPERFRTIEAYNIADGKWV 172 (341)
T ss_pred cCCCccCCCcccceEEEEECCCCeEe
Confidence 643 24578888887654444
No 38
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.48 E-value=5.8e-14 Score=143.32 Aligned_cols=150 Identities=19% Similarity=0.247 Sum_probs=115.0
Q ss_pred eeccCCCCcceeeeeccCCE-EEEEEeccCCCCccceeEEEEecCCCCceEEEEcCCCCCCCCceeEEEEECCEEEEEec
Q 004569 19 EIFVPHLCSVYCCNACAIDV-IFCCLFWLLWFLQPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGG 97 (744)
Q Consensus 19 ~~~~p~~~~~~~~~~~~~~~-ifgg~gg~~~~~~~l~D~~~l~~~~~~~W~w~~~~g~~P~pR~~Hsaa~~g~~LyV~GG 97 (744)
+..+|+.+.+++.+..++.+ |||| .....+...+|++.|+.. +-+|+.+...|.+|.-|..|+++++++.||||||
T Consensus 123 ~G~vPgaRDGHsAcV~gn~MyiFGG--ye~~a~~FS~d~h~ld~~-TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGG 199 (392)
T KOG4693|consen 123 EGFVPGARDGHSACVWGNQMYIFGG--YEEDAQRFSQDTHVLDFA-TMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGG 199 (392)
T ss_pred eeecCCccCCceeeEECcEEEEecC--hHHHHHhhhccceeEecc-ceeeeehhccCCCchhhhhhhhhhccceEEEecc
Confidence 45899999998887665544 5554 455666778999999876 5578888888999999999999999999999999
Q ss_pred cCCCCCccCC-----CceEEEEECCCCcEEeCC--CCCCCCCCCCCCcccCCCCccccccccccEEEEEECCeEEEEccc
Q 004569 98 ALGGGRMVED-----SSSVAVLDTAAGVWCDTK--SVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGL 170 (744)
Q Consensus 98 ~~~~~~~~~~-----~~sv~~yD~~t~~W~~~~--~~~~~~R~g~~~~~~~~~d~~~~~~~R~~Hsa~v~~~~IYV~GG~ 170 (744)
+.....++-. -..+..+|..|..|.... ++.|. .|-.|++.+++++||+|||+
T Consensus 200 R~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~--------------------GRRSHS~fvYng~~Y~FGGY 259 (392)
T KOG4693|consen 200 RSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPG--------------------GRRSHSTFVYNGKMYMFGGY 259 (392)
T ss_pred ccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCC--------------------cccccceEEEcceEEEeccc
Confidence 8653222111 123788999999998643 23333 46669999999999999999
Q ss_pred cCC--cccccccccccccccccc
Q 004569 171 RGG--VLLDDLLVAEDLAAAETT 191 (744)
Q Consensus 171 ~g~--~~l~dv~~~D~~~~~~~~ 191 (744)
+|. .-++|+++||.+...|+-
T Consensus 260 ng~ln~HfndLy~FdP~t~~W~~ 282 (392)
T KOG4693|consen 260 NGTLNVHFNDLYCFDPKTSMWSV 282 (392)
T ss_pred chhhhhhhcceeecccccchhee
Confidence 875 568999999988766654
No 39
>PLN02193 nitrile-specifier protein
Probab=99.47 E-value=5.1e-13 Score=152.66 Aligned_cols=142 Identities=18% Similarity=0.158 Sum_probs=103.3
Q ss_pred cCCCCcceeeeeccCCEEEEEEeccCC-CCccceeEEEEecCCCCceEEEEcCCCCCC-CCceeEEEEECCEEEEEeccC
Q 004569 22 VPHLCSVYCCNACAIDVIFCCLFWLLW-FLQPLASAYGLAKHRDGRWEWAIAPGVSPS-PRYQHAAVFVNARLHVSGGAL 99 (744)
Q Consensus 22 ~p~~~~~~~~~~~~~~~ifgg~gg~~~-~~~~l~D~~~l~~~~~~~W~w~~~~g~~P~-pR~~Hsaa~~g~~LyV~GG~~ 99 (744)
.|.++..+++.... +.||.. ||... .....+|+|.|+... .+|+.+...+.+|. +|..|++++++++||||||..
T Consensus 162 ~P~pR~~h~~~~~~-~~iyv~-GG~~~~~~~~~~~v~~yD~~~-~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~ 238 (470)
T PLN02193 162 GPGLRCSHGIAQVG-NKIYSF-GGEFTPNQPIDKHLYVFDLET-RTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRD 238 (470)
T ss_pred CCCCccccEEEEEC-CEEEEE-CCcCCCCCCeeCcEEEEECCC-CEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCC
Confidence 46677777776554 455553 33322 233457899998864 45664433344555 367899999999999999986
Q ss_pred CCCCccCCCceEEEEECCCCcEEeCCCCC--CCCCCCCCCcccCCCCccccccccccEEEEEECCeEEEEccccCCcccc
Q 004569 100 GGGRMVEDSSSVAVLDTAAGVWCDTKSVV--TSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRGGVLLD 177 (744)
Q Consensus 100 ~~~~~~~~~~sv~~yD~~t~~W~~~~~~~--~~~R~g~~~~~~~~~d~~~~~~~R~~Hsa~v~~~~IYV~GG~~g~~~l~ 177 (744)
.. ..+++ +++||+.+++|..++++. |. +|+.|++++++++|||+||.++...++
T Consensus 239 ~~-~~~nd---v~~yD~~t~~W~~l~~~~~~P~--------------------~R~~h~~~~~~~~iYv~GG~~~~~~~~ 294 (470)
T PLN02193 239 AS-RQYNG---FYSFDTTTNEWKLLTPVEEGPT--------------------PRSFHSMAADEENVYVFGGVSATARLK 294 (470)
T ss_pred CC-CCCcc---EEEEECCCCEEEEcCcCCCCCC--------------------CccceEEEEECCEEEEECCCCCCCCcc
Confidence 53 23445 999999999999887653 33 466699999999999999998877889
Q ss_pred ccccccccccccc
Q 004569 178 DLLVAEDLAAAET 190 (744)
Q Consensus 178 dv~~~D~~~~~~~ 190 (744)
++++||...-+|.
T Consensus 295 ~~~~yd~~t~~W~ 307 (470)
T PLN02193 295 TLDSYNIVDKKWF 307 (470)
T ss_pred eEEEEECCCCEEE
Confidence 9999997765554
No 40
>PLN02193 nitrile-specifier protein
Probab=99.47 E-value=4.8e-13 Score=152.88 Aligned_cols=132 Identities=14% Similarity=0.180 Sum_probs=96.9
Q ss_pred cCCEEEEEEeccCCCCccceeEEEEecCCCCceEEEEcCCCCCCCCceeEEEEECCEEEEEeccCCCCCccCCCceEEEE
Q 004569 35 AIDVIFCCLFWLLWFLQPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVL 114 (744)
Q Consensus 35 ~~~~ifgg~gg~~~~~~~l~D~~~l~~~~~~~W~w~~~~g~~P~pR~~Hsaa~~g~~LyV~GG~~~~~~~~~~~~sv~~y 114 (744)
..+.||+. ||.. ....++|+|.|+.. ..+|+.+...+..|.||+.|++++++++||||||.+... .+++ +++|
T Consensus 227 ~~~~lYvf-GG~~-~~~~~ndv~~yD~~-t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~-~~~~---~~~y 299 (470)
T PLN02193 227 IGSTLYVF-GGRD-ASRQYNGFYSFDTT-TNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA-RLKT---LDSY 299 (470)
T ss_pred ECCEEEEE-CCCC-CCCCCccEEEEECC-CCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC-Ccce---EEEE
Confidence 34556663 3332 33468999999876 446766554344589999999999999999999986532 3444 9999
Q ss_pred ECCCCcEEeCCCCCCCCCCCCCCcccCCCCccccccccccEEEEEECCeEEEEccccCCccccccccccccccccccc
Q 004569 115 DTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRGGVLLDDLLVAEDLAAAETTT 192 (744)
Q Consensus 115 D~~t~~W~~~~~~~~~~R~g~~~~~~~~~d~~~~~~~R~~Hsa~v~~~~IYV~GG~~g~~~l~dv~~~D~~~~~~~~~ 192 (744)
|+.+++|..++..... ...|+.|++++++++|||+||.++. .++++++||...-.|+..
T Consensus 300 d~~t~~W~~~~~~~~~------------------~~~R~~~~~~~~~gkiyviGG~~g~-~~~dv~~yD~~t~~W~~~ 358 (470)
T PLN02193 300 NIVDKKWFHCSTPGDS------------------FSIRGGAGLEVVQGKVWVVYGFNGC-EVDDVHYYDPVQDKWTQV 358 (470)
T ss_pred ECCCCEEEeCCCCCCC------------------CCCCCCcEEEEECCcEEEEECCCCC-ccCceEEEECCCCEEEEe
Confidence 9999999986542111 1146679999999999999998765 479999999887666543
No 41
>PHA02713 hypothetical protein; Provisional
Probab=99.47 E-value=6.8e-13 Score=154.51 Aligned_cols=120 Identities=13% Similarity=0.172 Sum_probs=88.5
Q ss_pred cCCCCcceeeeeccCCEEEEEEeccCCCCccceeEEEEecCCCCceEEEEcCCCCCCCCceeEEEEECCEEEEEeccCCC
Q 004569 22 VPHLCSVYCCNACAIDVIFCCLFWLLWFLQPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGG 101 (744)
Q Consensus 22 ~p~~~~~~~~~~~~~~~ifgg~gg~~~~~~~l~D~~~l~~~~~~~W~w~~~~g~~P~pR~~Hsaa~~g~~LyV~GG~~~~ 101 (744)
.|.++..+++ +...+.||+. ||.......++++|.|+... + +|...+ +||.+|..|++++++++|||+||.++.
T Consensus 290 mp~~r~~~~~-a~l~~~IYvi-GG~~~~~~~~~~v~~Yd~~~-n--~W~~~~-~m~~~R~~~~~~~~~g~IYviGG~~~~ 363 (557)
T PHA02713 290 IPNHIINYAS-AIVDNEIIIA-GGYNFNNPSLNKVYKINIEN-K--IHVELP-PMIKNRCRFSLAVIDDTIYAIGGQNGT 363 (557)
T ss_pred CCccccceEE-EEECCEEEEE-cCCCCCCCccceEEEEECCC-C--eEeeCC-CCcchhhceeEEEECCEEEEECCcCCC
Confidence 4444444444 3445667774 33332344678999988753 3 455554 689999999999999999999998643
Q ss_pred CCccCCCceEEEEECCCCcEEeCCCCCCCCCCCCCCcccCCCCccccccccccEEEEEECCeEEEEccccC
Q 004569 102 GRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRG 172 (744)
Q Consensus 102 ~~~~~~~~sv~~yD~~t~~W~~~~~~~~~~R~g~~~~~~~~~d~~~~~~~R~~Hsa~v~~~~IYV~GG~~g 172 (744)
... .++++||+.+++|..+++++.+ |+.|++++++++|||+||.++
T Consensus 364 -~~~---~sve~Ydp~~~~W~~~~~mp~~---------------------r~~~~~~~~~g~IYviGG~~~ 409 (557)
T PHA02713 364 -NVE---RTIECYTMGDDKWKMLPDMPIA---------------------LSSYGMCVLDQYIYIIGGRTE 409 (557)
T ss_pred -CCC---ceEEEEECCCCeEEECCCCCcc---------------------cccccEEEECCEEEEEeCCCc
Confidence 223 3499999999999999887443 667999999999999999864
No 42
>PLN02153 epithiospecifier protein
Probab=99.43 E-value=1.8e-12 Score=141.89 Aligned_cols=145 Identities=20% Similarity=0.251 Sum_probs=98.4
Q ss_pred CCCCcceeeeeccCCEEEEEEeccCCC-----CccceeEEEEecCCCCceEEEEcCCCCCCCCceeEEEEECCEEEEEec
Q 004569 23 PHLCSVYCCNACAIDVIFCCLFWLLWF-----LQPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGG 97 (744)
Q Consensus 23 p~~~~~~~~~~~~~~~ifgg~gg~~~~-----~~~l~D~~~l~~~~~~~W~w~~~~g~~P~pR~~Hsaa~~g~~LyV~GG 97 (744)
|.++..+++. ...+.||+. ||.... ...+++++.|+.. ..+|+.+...+.+|.+|.+|++++++++|||+||
T Consensus 125 p~~R~~~~~~-~~~~~iyv~-GG~~~~~~~~~~~~~~~v~~yd~~-~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG 201 (341)
T PLN02153 125 PEARTFHSMA-SDENHVYVF-GGVSKGGLMKTPERFRTIEAYNIA-DGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYG 201 (341)
T ss_pred CCCceeeEEE-EECCEEEEE-CCccCCCccCCCcccceEEEEECC-CCeEeeCCCCCCCCCCCCcceEEEECCeEEEEec
Confidence 5556555544 344556653 333221 1246889888776 3466655544456789999999999999999999
Q ss_pred cCCC----CCccCCCceEEEEECCCCcEEeCCCC--CCCCCCCCCCcccCCCCccccccccccEEEEEECCeEEEEcccc
Q 004569 98 ALGG----GRMVEDSSSVAVLDTAAGVWCDTKSV--VTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLR 171 (744)
Q Consensus 98 ~~~~----~~~~~~~~sv~~yD~~t~~W~~~~~~--~~~~R~g~~~~~~~~~d~~~~~~~R~~Hsa~v~~~~IYV~GG~~ 171 (744)
.... +......+++++||+++++|..+... .|. +|+.|++++++++||||||..
T Consensus 202 ~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~--------------------~r~~~~~~~~~~~iyv~GG~~ 261 (341)
T PLN02153 202 FATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPS--------------------ARSVFAHAVVGKYIIIFGGEV 261 (341)
T ss_pred cccccccCCccceecCceEEEEcCCCcEEeccccCCCCC--------------------CcceeeeEEECCEEEEECccc
Confidence 7521 11101124499999999999987643 244 366699999999999999963
Q ss_pred ---------CCccccccccccccccccc
Q 004569 172 ---------GGVLLDDLLVAEDLAAAET 190 (744)
Q Consensus 172 ---------g~~~l~dv~~~D~~~~~~~ 190 (744)
....++++++||...-.|+
T Consensus 262 ~~~~~~~~~~~~~~n~v~~~d~~~~~W~ 289 (341)
T PLN02153 262 WPDLKGHLGPGTLSNEGYALDTETLVWE 289 (341)
T ss_pred CCccccccccccccccEEEEEcCccEEE
Confidence 2345789999998766555
No 43
>PHA03098 kelch-like protein; Provisional
Probab=99.42 E-value=1.9e-12 Score=149.96 Aligned_cols=151 Identities=13% Similarity=0.112 Sum_probs=103.5
Q ss_pred eeEEeeeeeceec-cCCCCcceeeeeccCCEEEEEEeccCCCCccceeEEEEecCCCCceEEEEcCCCCCCCCceeEEEE
Q 004569 9 NFKLSSVKIAEIF-VPHLCSVYCCNACAIDVIFCCLFWLLWFLQPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVF 87 (744)
Q Consensus 9 ~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~ifgg~gg~~~~~~~l~D~~~l~~~~~~~W~w~~~~g~~P~pR~~Hsaa~ 87 (744)
-+...+-+|.... .|.++..+++. ..++.+|+. ||.. ....++++|.++.. .++|+... ++|.||+.|++++
T Consensus 315 ~yd~~~~~W~~~~~~~~~R~~~~~~-~~~~~lyv~-GG~~-~~~~~~~v~~yd~~-~~~W~~~~---~lp~~r~~~~~~~ 387 (534)
T PHA03098 315 SYDTKTKSWNKVPELIYPRKNPGVT-VFNNRIYVI-GGIY-NSISLNTVESWKPG-ESKWREEP---PLIFPRYNPCVVN 387 (534)
T ss_pred EEeCCCCeeeECCCCCcccccceEE-EECCEEEEE-eCCC-CCEecceEEEEcCC-CCceeeCC---CcCcCCccceEEE
Confidence 3444444444432 33344444443 345566664 3332 34567889988775 45666433 6899999999999
Q ss_pred ECCEEEEEeccCCCCCccCCCceEEEEECCCCcEEeCCCCCCCCCCCCCCcccCCCCccccccccccEEEEEECCeEEEE
Q 004569 88 VNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIY 167 (744)
Q Consensus 88 ~g~~LyV~GG~~~~~~~~~~~~sv~~yD~~t~~W~~~~~~~~~~R~g~~~~~~~~~d~~~~~~~R~~Hsa~v~~~~IYV~ 167 (744)
++++|||+||....+..++ ++++||+.+++|..+++++ . +|+.|++++++++|||+
T Consensus 388 ~~~~iYv~GG~~~~~~~~~---~v~~yd~~t~~W~~~~~~p-~--------------------~r~~~~~~~~~~~iyv~ 443 (534)
T PHA03098 388 VNNLIYVIGGISKNDELLK---TVECFSLNTNKWSKGSPLP-I--------------------SHYGGCAIYHDGKIYVI 443 (534)
T ss_pred ECCEEEEECCcCCCCcccc---eEEEEeCCCCeeeecCCCC-c--------------------cccCceEEEECCEEEEE
Confidence 9999999999765333333 4999999999999987663 3 25669999999999999
Q ss_pred ccccCCc---cccccccccccccccc
Q 004569 168 GGLRGGV---LLDDLLVAEDLAAAET 190 (744)
Q Consensus 168 GG~~g~~---~l~dv~~~D~~~~~~~ 190 (744)
||.++.. .++++++||...-+|.
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~ 469 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWT 469 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCcee
Confidence 9976432 3567888887754444
No 44
>PHA02790 Kelch-like protein; Provisional
Probab=99.41 E-value=3.2e-12 Score=146.44 Aligned_cols=150 Identities=18% Similarity=0.106 Sum_probs=102.9
Q ss_pred CCCCcceeeeeccCCEEEEEEeccCCCCccceeEEEEecCCCCceEEEEcCCCCCCCCceeEEEEECCEEEEEeccCCCC
Q 004569 23 PHLCSVYCCNACAIDVIFCCLFWLLWFLQPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGG 102 (744)
Q Consensus 23 p~~~~~~~~~~~~~~~ifgg~gg~~~~~~~l~D~~~l~~~~~~~W~w~~~~g~~P~pR~~Hsaa~~g~~LyV~GG~~~~~ 102 (744)
|.++..++.. ..++.||.. ||... .+.++.++.. .++ |...+ +||.+|.+|++++++++|||+||....
T Consensus 306 ~~~r~~~~~v-~~~~~iYvi-GG~~~----~~sve~ydp~-~n~--W~~~~-~l~~~r~~~~~~~~~g~IYviGG~~~~- 374 (480)
T PHA02790 306 NSPRLYASGV-PANNKLYVV-GGLPN----PTSVERWFHG-DAA--WVNMP-SLLKPRCNPAVASINNVIYVIGGHSET- 374 (480)
T ss_pred CchhhcceEE-EECCEEEEE-CCcCC----CCceEEEECC-CCe--EEECC-CCCCCCcccEEEEECCEEEEecCcCCC-
Confidence 3444444433 345667775 33322 1345555543 334 55554 689999999999999999999997542
Q ss_pred CccCCCceEEEEECCCCcEEeCCCCCCCCCC-------CCCCcc----cCCCCcccc--------ccccccEEEEEECCe
Q 004569 103 RMVEDSSSVAVLDTAAGVWCDTKSVVTSPRT-------GRYSAD----AAGGDAAVE--------LTRRCRHAAAAVGDL 163 (744)
Q Consensus 103 ~~~~~~~sv~~yD~~t~~W~~~~~~~~~~R~-------g~~~~~----~~~~d~~~~--------~~~R~~Hsa~v~~~~ 163 (744)
. .++++|||++++|...++++. +|. ++..|. ...|||..+ ..+|..|++++++++
T Consensus 375 --~---~~ve~ydp~~~~W~~~~~m~~-~r~~~~~~~~~~~IYv~GG~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~ 448 (480)
T PHA02790 375 --D---TTTEYLLPNHDQWQFGPSTYY-PHYKSCALVFGRRLFLVGRNAEFYCESSNTWTLIDDPIYPRDNPELIIVDNK 448 (480)
T ss_pred --C---ccEEEEeCCCCEEEeCCCCCC-ccccceEEEECCEEEEECCceEEecCCCCcEeEcCCCCCCccccEEEEECCE
Confidence 2 348999999999999887743 443 222222 345777655 337999999999999
Q ss_pred EEEEccccCCcccccccccccccccc
Q 004569 164 IFIYGGLRGGVLLDDLLVAEDLAAAE 189 (744)
Q Consensus 164 IYV~GG~~g~~~l~dv~~~D~~~~~~ 189 (744)
|||+||+++...++++++||...=+|
T Consensus 449 IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 449 LLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred EEEECCcCCCcccceEEEEECCCCeE
Confidence 99999998766678899998765444
No 45
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.39 E-value=2.5e-12 Score=149.75 Aligned_cols=154 Identities=15% Similarity=0.117 Sum_probs=111.2
Q ss_pred cceeEEeeeeeceeccCCCCcceeeeeccCCEEEEEEeccCCCCccceeEEEEecCCCCceEEEEcCCCCCCCCceeEEE
Q 004569 7 ITNFKLSSVKIAEIFVPHLCSVYCCNACAIDVIFCCLFWLLWFLQPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAV 86 (744)
Q Consensus 7 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ifgg~gg~~~~~~~l~D~~~l~~~~~~~W~w~~~~g~~P~pR~~Hsaa 86 (744)
+.-+...+-+|....--..+..-+..+...+.||.. ||.......++.+-.|+...+ .|+... +|+.+|.+|+++
T Consensus 398 vE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~-GG~~~~~~~l~sve~YDP~t~-~W~~~~---~M~~~R~~~g~a 472 (571)
T KOG4441|consen 398 VECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYII-GGGDGSSNCLNSVECYDPETN-TWTLIA---PMNTRRSGFGVA 472 (571)
T ss_pred EEEecCCCCcccccCCCCcceeeeEEEEECCEEEEE-cCcCCCccccceEEEEcCCCC-ceeecC---CcccccccceEE
Confidence 333444445555543222233333334456668875 444444448888988887744 455444 799999999999
Q ss_pred EECCEEEEEeccCCCCCccCCCceEEEEECCCCcEEeCCCCCCCCCCCCCCcccCCCCccccccccccEEEEEECCeEEE
Q 004569 87 FVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFI 166 (744)
Q Consensus 87 ~~g~~LyV~GG~~~~~~~~~~~~sv~~yD~~t~~W~~~~~~~~~~R~g~~~~~~~~~d~~~~~~~R~~Hsa~v~~~~IYV 166 (744)
+++++|||+||.++ .... .+|++|||++++|..+++|..+ |..+++++++++||+
T Consensus 473 ~~~~~iYvvGG~~~-~~~~---~~VE~ydp~~~~W~~v~~m~~~---------------------rs~~g~~~~~~~ly~ 527 (571)
T KOG4441|consen 473 VLNGKIYVVGGFDG-TSAL---SSVERYDPETNQWTMVAPMTSP---------------------RSAVGVVVLGGKLYA 527 (571)
T ss_pred EECCEEEEECCccC-CCcc---ceEEEEcCCCCceeEcccCccc---------------------cccccEEEECCEEEE
Confidence 99999999999887 3223 3499999999999999877333 667999999999999
Q ss_pred EccccCCccccccccccccccccc
Q 004569 167 YGGLRGGVLLDDLLVAEDLAAAET 190 (744)
Q Consensus 167 ~GG~~g~~~l~dv~~~D~~~~~~~ 190 (744)
.||++|...++++++||...=.|+
T Consensus 528 vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 528 VGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred EecccCccccceeEEcCCCCCcee
Confidence 999999999999999986543433
No 46
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.39 E-value=3.9e-12 Score=138.16 Aligned_cols=112 Identities=13% Similarity=0.055 Sum_probs=86.8
Q ss_pred cceeEEEEecCCCCceEEEEcCCCCCCCCceeEEEEECCEEEEEeccCCCCCccCCCceEEEEECCCCcE----EeCCCC
Q 004569 52 PLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVW----CDTKSV 127 (744)
Q Consensus 52 ~l~D~~~l~~~~~~~W~w~~~~g~~P~pR~~Hsaa~~g~~LyV~GG~~~~~~~~~~~~sv~~yD~~t~~W----~~~~~~ 127 (744)
..+|+|.|+.. ...|+|...+ ++|.||..|++++++++|||+||..... .++ ++++||+.+++| ..++++
T Consensus 37 ~~~~v~~~~~~-~~~~~W~~~~-~lp~~r~~~~~~~~~~~lyviGG~~~~~-~~~---~v~~~d~~~~~w~~~~~~~~~l 110 (323)
T TIGR03548 37 NYKGIYIAKDE-NSNLKWVKDG-QLPYEAAYGASVSVENGIYYIGGSNSSE-RFS---SVYRITLDESKEELICETIGNL 110 (323)
T ss_pred eeeeeEEEecC-CCceeEEEcc-cCCccccceEEEEECCEEEEEcCCCCCC-Cce---eEEEEEEcCCceeeeeeEcCCC
Confidence 45789888732 3457787765 7899998888899999999999986532 334 499999999998 455555
Q ss_pred CCCCCCCCCCcccCCCCccccccccccEEEEEECCeEEEEccccCCccccccccccccccccc
Q 004569 128 VTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRGGVLLDDLLVAEDLAAAET 190 (744)
Q Consensus 128 ~~~~R~g~~~~~~~~~d~~~~~~~R~~Hsa~v~~~~IYV~GG~~g~~~l~dv~~~D~~~~~~~ 190 (744)
+ . +|+.|++++++++|||+||..+...++++++||...-+|.
T Consensus 111 p-~--------------------~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~ 152 (323)
T TIGR03548 111 P-F--------------------TFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWF 152 (323)
T ss_pred C-c--------------------CccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence 2 2 3666999999999999999866667899999998755544
No 47
>PHA03098 kelch-like protein; Provisional
Probab=99.39 E-value=3.4e-12 Score=147.91 Aligned_cols=142 Identities=14% Similarity=0.180 Sum_probs=102.7
Q ss_pred ccCCCCcceeeeeccCCEEEEEEeccCCCCccceeEEEEecCCCCceEEEEcCCCCCCCCceeEEEEECCEEEEEeccCC
Q 004569 21 FVPHLCSVYCCNACAIDVIFCCLFWLLWFLQPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALG 100 (744)
Q Consensus 21 ~~p~~~~~~~~~~~~~~~ifgg~gg~~~~~~~l~D~~~l~~~~~~~W~w~~~~g~~P~pR~~Hsaa~~g~~LyV~GG~~~ 100 (744)
..|.++..+++. ...+.||.. ||.......+++++.|+.. +++|+. .+ ++|.+|++|++++++++|||+||...
T Consensus 375 ~lp~~r~~~~~~-~~~~~iYv~-GG~~~~~~~~~~v~~yd~~-t~~W~~--~~-~~p~~r~~~~~~~~~~~iyv~GG~~~ 448 (534)
T PHA03098 375 PLIFPRYNPCVV-NVNNLIYVI-GGISKNDELLKTVECFSLN-TNKWSK--GS-PLPISHYGGCAIYHDGKIYVIGGISY 448 (534)
T ss_pred CcCcCCccceEE-EECCEEEEE-CCcCCCCcccceEEEEeCC-CCeeee--cC-CCCccccCceEEEECCEEEEECCccC
Confidence 345556555554 345667664 4443444557899988875 345554 33 58999999999999999999999764
Q ss_pred CCCccCCCceEEEEECCCCcEEeCCCCCCCCCCCCCCcccCCCCccccccccccEEEEEECCeEEEEccccCCccccccc
Q 004569 101 GGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRGGVLLDDLL 180 (744)
Q Consensus 101 ~~~~~~~~~sv~~yD~~t~~W~~~~~~~~~~R~g~~~~~~~~~d~~~~~~~R~~Hsa~v~~~~IYV~GG~~g~~~l~dv~ 180 (744)
... ......+++||+++++|..++.++. +|..|++++++++|||+||.++....++++
T Consensus 449 ~~~-~~~~~~v~~yd~~~~~W~~~~~~~~---------------------~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~ 506 (534)
T PHA03098 449 IDN-IKVYNIVESYNPVTNKWTELSSLNF---------------------PRINASLCIFNNKIYVVGGDKYEYYINEIE 506 (534)
T ss_pred CCC-CcccceEEEecCCCCceeeCCCCCc---------------------ccccceEEEECCEEEEEcCCcCCcccceeE
Confidence 321 1123349999999999999876632 256699999999999999998776688999
Q ss_pred cccccccccc
Q 004569 181 VAEDLAAAET 190 (744)
Q Consensus 181 ~~D~~~~~~~ 190 (744)
+||...-+|.
T Consensus 507 ~yd~~~~~W~ 516 (534)
T PHA03098 507 VYDDKTNTWT 516 (534)
T ss_pred EEeCCCCEEE
Confidence 9997755544
No 48
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.38 E-value=2e-12 Score=132.23 Aligned_cols=141 Identities=19% Similarity=0.245 Sum_probs=99.5
Q ss_pred CCCcceeeeeccCCEEEEEEeccCCC---CccceeEEEEecCCCCceEEEEcC------------CCCCCCCceeEEEEE
Q 004569 24 HLCSVYCCNACAIDVIFCCLFWLLWF---LQPLASAYGLAKHRDGRWEWAIAP------------GVSPSPRYQHAAVFV 88 (744)
Q Consensus 24 ~~~~~~~~~~~~~~~ifgg~gg~~~~---~~~l~D~~~l~~~~~~~W~w~~~~------------g~~P~pR~~Hsaa~~ 88 (744)
+++.+.+........||..+|..... -..--|+-.|+.+ ..+|+..| ...|-.||+|+++.+
T Consensus 11 GPrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~---~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y 87 (392)
T KOG4693|consen 11 GPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAE---NYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEY 87 (392)
T ss_pred CcccccceeeeecceEEecCCcccccccccCCcceeEEeecc---ceeEEecCcccccccccCCCCccchhhcCceEEEE
Confidence 34444444333344455543333322 1223466666655 34555444 123567999999999
Q ss_pred CCEEEEEeccCCCCCccCCCceEEEEECCCCcEE--eCCCCCCCCCCCCCCcccCCCCccccccccccEEEEEECCeEEE
Q 004569 89 NARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWC--DTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFI 166 (744)
Q Consensus 89 g~~LyV~GG~~~~~~~~~~~~sv~~yD~~t~~W~--~~~~~~~~~R~g~~~~~~~~~d~~~~~~~R~~Hsa~v~~~~IYV 166 (744)
.+++||-||++......+. +++||+++++|. ++.+..|.+|.| |+++++++.+||
T Consensus 88 ~d~~yvWGGRND~egaCN~---Ly~fDp~t~~W~~p~v~G~vPgaRDG--------------------HsAcV~gn~Myi 144 (392)
T KOG4693|consen 88 QDKAYVWGGRNDDEGACNL---LYEFDPETNVWKKPEVEGFVPGARDG--------------------HSACVWGNQMYI 144 (392)
T ss_pred cceEEEEcCccCcccccce---eeeeccccccccccceeeecCCccCC--------------------ceeeEECcEEEE
Confidence 9999999999874445555 999999999998 477778887888 999999999999
Q ss_pred EccccC--Cccccccccccccccccc
Q 004569 167 YGGLRG--GVLLDDLLVAEDLAAAET 190 (744)
Q Consensus 167 ~GG~~g--~~~l~dv~~~D~~~~~~~ 190 (744)
|||+.. +.+.+|++++|...+.|.
T Consensus 145 FGGye~~a~~FS~d~h~ld~~TmtWr 170 (392)
T KOG4693|consen 145 FGGYEEDAQRFSQDTHVLDFATMTWR 170 (392)
T ss_pred ecChHHHHHhhhccceeEeccceeee
Confidence 999854 467899999998877654
No 49
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.36 E-value=2.3e-12 Score=138.52 Aligned_cols=148 Identities=20% Similarity=0.214 Sum_probs=110.4
Q ss_pred eceeccCCCCcceeeeeccCCE--EEEEEeccCCCC--ccceeEEEEecCCCCceEEEEcCCCCCCCCceeEEEEECCEE
Q 004569 17 IAEIFVPHLCSVYCCNACAIDV--IFCCLFWLLWFL--QPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARL 92 (744)
Q Consensus 17 ~~~~~~p~~~~~~~~~~~~~~~--ifgg~gg~~~~~--~~l~D~~~l~~~~~~~W~w~~~~g~~P~pR~~Hsaa~~g~~L 92 (744)
+.+...|++++.+...+...+. ||||-+...+.. --..|+|.|+.. ...|+.+..+| .|+||++|-++++..+|
T Consensus 113 ~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~-trkweql~~~g-~PS~RSGHRMvawK~~l 190 (521)
T KOG1230|consen 113 VVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLK-TRKWEQLEFGG-GPSPRSGHRMVAWKRQL 190 (521)
T ss_pred eccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeec-cchheeeccCC-CCCCCccceeEEeeeeE
Confidence 3445678888888888877666 555533221111 246899999886 56899999875 69999999999999999
Q ss_pred EEEeccCCCCCccCCCceEEEEECCCCcEEeCCCC--CCCCCCCCCCcccCCCCccccccccccEEEEEE-CCeEEEEcc
Q 004569 93 HVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSV--VTSPRTGRYSADAAGGDAAVELTRRCRHAAAAV-GDLIFIYGG 169 (744)
Q Consensus 93 yV~GG~~~~~~~~~~~~sv~~yD~~t~~W~~~~~~--~~~~R~g~~~~~~~~~d~~~~~~~R~~Hsa~v~-~~~IYV~GG 169 (744)
++|||.....+.....++||+||.++-+|.++.+. .|.||.| |+..+. +|.|||+||
T Consensus 191 ilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSG--------------------cq~~vtpqg~i~vyGG 250 (521)
T KOG1230|consen 191 ILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSG--------------------CQFSVTPQGGIVVYGG 250 (521)
T ss_pred EEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCc--------------------ceEEecCCCcEEEEcc
Confidence 99999864433333334499999999999976553 3665555 999988 999999999
Q ss_pred ccCC---------ccccccccccccc
Q 004569 170 LRGG---------VLLDDLLVAEDLA 186 (744)
Q Consensus 170 ~~g~---------~~l~dv~~~D~~~ 186 (744)
++.. ...+|+|.++...
T Consensus 251 YsK~~~kK~~dKG~~hsDmf~L~p~~ 276 (521)
T KOG1230|consen 251 YSKQRVKKDVDKGTRHSDMFLLKPED 276 (521)
T ss_pred hhHhhhhhhhhcCceeeeeeeecCCc
Confidence 8542 4678999998654
No 50
>PHA02713 hypothetical protein; Provisional
Probab=99.36 E-value=6.1e-12 Score=146.57 Aligned_cols=137 Identities=10% Similarity=-0.042 Sum_probs=97.3
Q ss_pred ccCCCCcceeeeeccCCEEEEEEeccCCC-----------------CccceeEEEEecCCCCceEEEEcCCCCCCCCcee
Q 004569 21 FVPHLCSVYCCNACAIDVIFCCLFWLLWF-----------------LQPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQH 83 (744)
Q Consensus 21 ~~p~~~~~~~~~~~~~~~ifgg~gg~~~~-----------------~~~l~D~~~l~~~~~~~W~w~~~~g~~P~pR~~H 83 (744)
..|.++..++.... .+.||+. ||.... ...++.++.|+...+ +|+ ..+ +||.+|..|
T Consensus 384 ~mp~~r~~~~~~~~-~g~IYvi-GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td-~W~--~v~-~m~~~r~~~ 457 (557)
T PHA02713 384 DMPIALSSYGMCVL-DQYIYII-GGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN-IWE--TLP-NFWTGTIRP 457 (557)
T ss_pred CCCcccccccEEEE-CCEEEEE-eCCCcccccccccccccccccccccccceEEEECCCCC-eEe--ecC-CCCcccccC
Confidence 35556655555444 4666664 333221 113567887877643 555 443 689999999
Q ss_pred EEEEECCEEEEEeccCCCCCccCCCceEEEEECCC-CcEEeCCCCCCCCCCCCCCcccCCCCccccccccccEEEEEECC
Q 004569 84 AAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAA-GVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGD 162 (744)
Q Consensus 84 saa~~g~~LyV~GG~~~~~~~~~~~~sv~~yD~~t-~~W~~~~~~~~~~R~g~~~~~~~~~d~~~~~~~R~~Hsa~v~~~ 162 (744)
++++++++|||+||.++... . ...+++|||++ ++|..+++++. +|..|+++++++
T Consensus 458 ~~~~~~~~IYv~GG~~~~~~-~--~~~ve~Ydp~~~~~W~~~~~m~~---------------------~r~~~~~~~~~~ 513 (557)
T PHA02713 458 GVVSHKDDIYVVCDIKDEKN-V--KTCIFRYNTNTYNGWELITTTES---------------------RLSALHTILHDN 513 (557)
T ss_pred cEEEECCEEEEEeCCCCCCc-c--ceeEEEecCCCCCCeeEccccCc---------------------ccccceeEEECC
Confidence 99999999999999864221 1 23489999999 89999887733 366799999999
Q ss_pred eEEEEccccCCccccccccccccccccc
Q 004569 163 LIFIYGGLRGGVLLDDLLVAEDLAAAET 190 (744)
Q Consensus 163 ~IYV~GG~~g~~~l~dv~~~D~~~~~~~ 190 (744)
+|||+||+++. .++++||...=+|+
T Consensus 514 ~iyv~Gg~~~~---~~~e~yd~~~~~W~ 538 (557)
T PHA02713 514 TIMMLHCYESY---MLQDTFNVYTYEWN 538 (557)
T ss_pred EEEEEeeecce---eehhhcCccccccc
Confidence 99999999873 47888887755554
No 51
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.36 E-value=1.4e-12 Score=142.54 Aligned_cols=158 Identities=23% Similarity=0.408 Sum_probs=118.6
Q ss_pred eeccCCCCcceeeeeccCCE-EEEEEeccCCCCccceeEEEEecCCCCceEEEEcC------CCCCCCCceeEEEEECCE
Q 004569 19 EIFVPHLCSVYCCNACAIDV-IFCCLFWLLWFLQPLASAYGLAKHRDGRWEWAIAP------GVSPSPRYQHAAVFVNAR 91 (744)
Q Consensus 19 ~~~~p~~~~~~~~~~~~~~~-ifgg~gg~~~~~~~l~D~~~l~~~~~~~W~w~~~~------g~~P~pR~~Hsaa~~g~~ 91 (744)
...+|+.|..|-..+.+... +||| +...+...||+|.|.. .+|+|.... |.+|.||.+|+-.+++++
T Consensus 75 rGDiPpgcAA~GfvcdGtrilvFGG---MvEYGkYsNdLYELQa---sRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnK 148 (830)
T KOG4152|consen 75 RGDIPPGCAAFGFVCDGTRILVFGG---MVEYGKYSNDLYELQA---SRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNK 148 (830)
T ss_pred cCCCCCchhhcceEecCceEEEEcc---EeeeccccchHHHhhh---hhhhHhhcCCCCCCCCCCCCCccCceeEEeccE
Confidence 34678888888777665544 5555 7788899999997755 489998764 788999999999999999
Q ss_pred EEEEeccCCCC--------CccCCCceEEEEECCCC----cEEe--CCCCCCCCCCCCCCcccCCCCccccccccccEEE
Q 004569 92 LHVSGGALGGG--------RMVEDSSSVAVLDTAAG----VWCD--TKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAA 157 (744)
Q Consensus 92 LyV~GG~~~~~--------~~~~~~~sv~~yD~~t~----~W~~--~~~~~~~~R~g~~~~~~~~~d~~~~~~~R~~Hsa 157 (744)
-|+|||..+.. ++++| +++++...+ -|.. ..+..|+| |..|.+
T Consensus 149 cYlFGGLaNdseDpknNvPrYLnD---lY~leL~~Gsgvv~W~ip~t~Gv~P~p--------------------RESHTA 205 (830)
T KOG4152|consen 149 CYLFGGLANDSEDPKNNVPRYLND---LYILELRPGSGVVAWDIPITYGVLPPP--------------------RESHTA 205 (830)
T ss_pred eEEeccccccccCcccccchhhcc---eEEEEeccCCceEEEecccccCCCCCC--------------------ccccee
Confidence 99999975321 34555 888776633 3874 34555664 445999
Q ss_pred EEE------CCeEEEEccccCCccccccccccccccccccccchhhHHhhhhcccccCCCC
Q 004569 158 AAV------GDLIFIYGGLRGGVLLDDLLVAEDLAAAETTTAASHAAAAAAASNVQSRLPG 212 (744)
Q Consensus 158 ~v~------~~~IYV~GG~~g~~~l~dv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (744)
+++ ..++|||||.+|. .|+|+|.+|...+.|+.|..+ ...|.+|++|-
T Consensus 206 ViY~eKDs~~skmvvyGGM~G~-RLgDLW~Ldl~Tl~W~kp~~~------G~~PlPRSLHs 259 (830)
T KOG4152|consen 206 VIYTEKDSKKSKMVVYGGMSGC-RLGDLWTLDLDTLTWNKPSLS------GVAPLPRSLHS 259 (830)
T ss_pred EEEEeccCCcceEEEEcccccc-cccceeEEecceeeccccccc------CCCCCCccccc
Confidence 999 4689999999875 699999999999999999665 33344455543
No 52
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.28 E-value=3.7e-11 Score=131.66 Aligned_cols=135 Identities=10% Similarity=0.008 Sum_probs=89.2
Q ss_pred CCcceeeeeccCCEEEEEEeccCCC-----CccceeEEEEecCCCCceEEEEcCCCCCCCCceeEEE-EECCEEEEEecc
Q 004569 25 LCSVYCCNACAIDVIFCCLFWLLWF-----LQPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAV-FVNARLHVSGGA 98 (744)
Q Consensus 25 ~~~~~~~~~~~~~~ifgg~gg~~~~-----~~~l~D~~~l~~~~~~~W~w~~~~g~~P~pR~~Hsaa-~~g~~LyV~GG~ 98 (744)
++..+++. ...+.||+.+| .... ...++++|.|+... .+|+.+. ..+|.+|++|+++ +++++|||+||.
T Consensus 53 ~R~~~~~~-~~~~~iYv~GG-~~~~~~~~~~~~~~~v~~Yd~~~-~~W~~~~--~~~p~~~~~~~~~~~~~g~IYviGG~ 127 (346)
T TIGR03547 53 PRNQAVAA-AIDGKLYVFGG-IGKANSEGSPQVFDDVYRYDPKK-NSWQKLD--TRSPVGLLGASGFSLHNGQAYFTGGV 127 (346)
T ss_pred CcccceEE-EECCEEEEEeC-CCCCCCCCcceecccEEEEECCC-CEEecCC--CCCCCcccceeEEEEeCCEEEEEcCc
Confidence 34334443 44556666433 3221 13578999998764 4555543 2467788888877 799999999997
Q ss_pred CCCC--Ccc----------------------------CCCceEEEEECCCCcEEeCCCCCCCCCCCCCCcccCCCCcccc
Q 004569 99 LGGG--RMV----------------------------EDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVE 148 (744)
Q Consensus 99 ~~~~--~~~----------------------------~~~~sv~~yD~~t~~W~~~~~~~~~~R~g~~~~~~~~~d~~~~ 148 (744)
.... ..+ ...+++++||+.+++|..+++++..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~------------------ 189 (346)
T TIGR03547 128 NKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFL------------------ 189 (346)
T ss_pred ChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCC------------------
Confidence 5310 000 0024599999999999999887544
Q ss_pred ccccccEEEEEECCeEEEEccccCCc-cccccccccc
Q 004569 149 LTRRCRHAAAAVGDLIFIYGGLRGGV-LLDDLLVAED 184 (744)
Q Consensus 149 ~~~R~~Hsa~v~~~~IYV~GG~~g~~-~l~dv~~~D~ 184 (744)
+|+.|++++++++|||+||..... ...++++||.
T Consensus 190 --~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~ 224 (346)
T TIGR03547 190 --GTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLF 224 (346)
T ss_pred --cCCCceEEEECCEEEEEeeeeCCCccchheEEEEe
Confidence 356699999999999999975433 2345555653
No 53
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.28 E-value=3.3e-11 Score=132.05 Aligned_cols=120 Identities=17% Similarity=0.133 Sum_probs=78.6
Q ss_pred CCCCcceeeeeccCCEEEEEEeccCCCCccceeEEEEecC-CCCceEEEEcCCCCC-CCCceeEEEEECCEEEEEeccCC
Q 004569 23 PHLCSVYCCNACAIDVIFCCLFWLLWFLQPLASAYGLAKH-RDGRWEWAIAPGVSP-SPRYQHAAVFVNARLHVSGGALG 100 (744)
Q Consensus 23 p~~~~~~~~~~~~~~~ifgg~gg~~~~~~~l~D~~~l~~~-~~~~W~w~~~~g~~P-~pR~~Hsaa~~g~~LyV~GG~~~ 100 (744)
|.++...|+. ...+.||+. ||.. -+++|.|+.. ...+|.. .+ +|| .+|..|++++++++|||+||...
T Consensus 5 p~~~~~~~~~-~~~~~vyv~-GG~~-----~~~~~~~d~~~~~~~W~~--l~-~~p~~~R~~~~~~~~~~~iYv~GG~~~ 74 (346)
T TIGR03547 5 PVGFKNGTGA-IIGDKVYVG-LGSA-----GTSWYKLDLKKPSKGWQK--IA-DFPGGPRNQAVAAAIDGKLYVFGGIGK 74 (346)
T ss_pred CccccCceEE-EECCEEEEE-cccc-----CCeeEEEECCCCCCCceE--CC-CCCCCCcccceEEEECCEEEEEeCCCC
Confidence 4444433332 334566764 3321 1578888753 2344554 43 577 58999999999999999999853
Q ss_pred CCC--ccCCCceEEEEECCCCcEEeCCCCCCCCCCCCCCcccCCCCccccccccccEEEE-EECCeEEEEccccC
Q 004569 101 GGR--MVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAA-AVGDLIFIYGGLRG 172 (744)
Q Consensus 101 ~~~--~~~~~~sv~~yD~~t~~W~~~~~~~~~~R~g~~~~~~~~~d~~~~~~~R~~Hsa~-v~~~~IYV~GG~~g 172 (744)
... .....+++++||+.+++|..++.+.+.+ |..|+++ +++++|||+||+++
T Consensus 75 ~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~--------------------~~~~~~~~~~~g~IYviGG~~~ 129 (346)
T TIGR03547 75 ANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVG--------------------LLGASGFSLHNGQAYFTGGVNK 129 (346)
T ss_pred CCCCCcceecccEEEEECCCCEEecCCCCCCCc--------------------ccceeEEEEeCCEEEEEcCcCh
Confidence 211 0001234999999999999987433332 4448776 79999999999864
No 54
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.25 E-value=2.3e-11 Score=133.18 Aligned_cols=141 Identities=22% Similarity=0.271 Sum_probs=100.8
Q ss_pred eeccCCCCcceeee-----ecc--CCEEEEEEeccCCCCccceeEEEEecCCCCceEEEEcCCCCCCCCceeEEEEECCE
Q 004569 19 EIFVPHLCSVYCCN-----ACA--IDVIFCCLFWLLWFLQPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNAR 91 (744)
Q Consensus 19 ~~~~p~~~~~~~~~-----~~~--~~~ifgg~gg~~~~~~~l~D~~~l~~~~~~~W~w~~~~g~~P~pR~~Hsaa~~g~~ 91 (744)
...+|.++-.+... ... ..++||| -.+..|.|+|.|+.. .-.|......|..|.||+-|+++++|++
T Consensus 193 ~Gv~P~pRESHTAViY~eKDs~~skmvvyGG-----M~G~RLgDLW~Ldl~-Tl~W~kp~~~G~~PlPRSLHsa~~IGnK 266 (830)
T KOG4152|consen 193 YGVLPPPRESHTAVIYTEKDSKKSKMVVYGG-----MSGCRLGDLWTLDLD-TLTWNKPSLSGVAPLPRSLHSATTIGNK 266 (830)
T ss_pred cCCCCCCcccceeEEEEeccCCcceEEEEcc-----cccccccceeEEecc-eeecccccccCCCCCCcccccceeecce
Confidence 44566666544332 221 2236665 456779999999986 4467777777999999999999999999
Q ss_pred EEEEeccC-----C-----CCCccCCCceEEEEECCCCcEEeCCCC------CCCCCCCCCCcccCCCCccccccccccE
Q 004569 92 LHVSGGAL-----G-----GGRMVEDSSSVAVLDTAAGVWCDTKSV------VTSPRTGRYSADAAGGDAAVELTRRCRH 155 (744)
Q Consensus 92 LyV~GG~~-----~-----~~~~~~~~~sv~~yD~~t~~W~~~~~~------~~~~R~g~~~~~~~~~d~~~~~~~R~~H 155 (744)
||||||.- . ........+++.+++..+..|..+-.. .|. .|.+|
T Consensus 267 MyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR--------------------~RAGH 326 (830)
T KOG4152|consen 267 MYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPR--------------------ARAGH 326 (830)
T ss_pred eEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeecccccccccc--------------------ccccc
Confidence 99999952 0 011122346689999999999853221 333 45559
Q ss_pred EEEEECCeEEEEccccC-------Ccccccccccccc
Q 004569 156 AAAAVGDLIFIYGGLRG-------GVLLDDLLVAEDL 185 (744)
Q Consensus 156 sa~v~~~~IYV~GG~~g-------~~~l~dv~~~D~~ 185 (744)
|+++++.+||+..|.+| +.++.|+|.+|+.
T Consensus 327 CAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTe 363 (830)
T KOG4152|consen 327 CAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTE 363 (830)
T ss_pred eeEEeccEEEEEeccchhhHhhccccchhhhhhhccc
Confidence 99999999999999776 3568899999965
No 55
>PHA02790 Kelch-like protein; Provisional
Probab=99.24 E-value=7.2e-11 Score=135.38 Aligned_cols=121 Identities=21% Similarity=0.285 Sum_probs=89.6
Q ss_pred eeeeccCCEEEEEEeccCCCCccceeEEEEecCCCCceEEEEcCCCCCCCCceeEEEEECCEEEEEeccCCCCCccCCCc
Q 004569 30 CCNACAIDVIFCCLFWLLWFLQPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSS 109 (744)
Q Consensus 30 ~~~~~~~~~ifgg~gg~~~~~~~l~D~~~l~~~~~~~W~w~~~~g~~P~pR~~Hsaa~~g~~LyV~GG~~~~~~~~~~~~ 109 (744)
|.....++.+|+. ||.. ....++++|.++... + +|...+ +||.+|..|++++++++||++||..+ . .
T Consensus 265 ~~~~~~~~~lyvi-GG~~-~~~~~~~v~~Ydp~~-~--~W~~~~-~m~~~r~~~~~v~~~~~iYviGG~~~----~---~ 331 (480)
T PHA02790 265 CTSTHVGEVVYLI-GGWM-NNEIHNNAIAVNYIS-N--NWIPIP-PMNSPRLYASGVPANNKLYVVGGLPN----P---T 331 (480)
T ss_pred cceEEECCEEEEE-cCCC-CCCcCCeEEEEECCC-C--EEEECC-CCCchhhcceEEEECCEEEEECCcCC----C---C
Confidence 3333355677775 3332 234677898887653 3 455554 68999999999999999999999753 1 3
Q ss_pred eEEEEECCCCcEEeCCCCCCCCCCCCCCcccCCCCccccccccccEEEEEECCeEEEEccccCCccccccccccccc
Q 004569 110 SVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRGGVLLDDLLVAEDLA 186 (744)
Q Consensus 110 sv~~yD~~t~~W~~~~~~~~~~R~g~~~~~~~~~d~~~~~~~R~~Hsa~v~~~~IYV~GG~~g~~~l~dv~~~D~~~ 186 (744)
++++||+.+++|..+++++.+ |+.|++++++++|||+||.++. .+++++||...
T Consensus 332 sve~ydp~~n~W~~~~~l~~~---------------------r~~~~~~~~~g~IYviGG~~~~--~~~ve~ydp~~ 385 (480)
T PHA02790 332 SVERWFHGDAAWVNMPSLLKP---------------------RCNPAVASINNVIYVIGGHSET--DTTTEYLLPNH 385 (480)
T ss_pred ceEEEECCCCeEEECCCCCCC---------------------CcccEEEEECCEEEEecCcCCC--CccEEEEeCCC
Confidence 389999999999999887433 6669999999999999998643 35677777553
No 56
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.22 E-value=1e-10 Score=129.96 Aligned_cols=121 Identities=20% Similarity=0.221 Sum_probs=78.3
Q ss_pred cCCCCcceeeeeccCCEEEEEEeccCCCCccceeEEEEecCC-CCceEEEEcCCCCC-CCCceeEEEEECCEEEEEeccC
Q 004569 22 VPHLCSVYCCNACAIDVIFCCLFWLLWFLQPLASAYGLAKHR-DGRWEWAIAPGVSP-SPRYQHAAVFVNARLHVSGGAL 99 (744)
Q Consensus 22 ~p~~~~~~~~~~~~~~~ifgg~gg~~~~~~~l~D~~~l~~~~-~~~W~w~~~~g~~P-~pR~~Hsaa~~g~~LyV~GG~~ 99 (744)
+|.+....+... ..+.||+++|. . .+.+|.|+... .++|..+ + ++| .+|.+|++++++++|||+||..
T Consensus 25 lP~~~~~~~~~~-~~~~iyv~gG~-~-----~~~~~~~d~~~~~~~W~~l--~-~~p~~~r~~~~~v~~~~~IYV~GG~~ 94 (376)
T PRK14131 25 LPVPFKNGTGAI-DNNTVYVGLGS-A-----GTSWYKLDLNAPSKGWTKI--A-AFPGGPREQAVAAFIDGKLYVFGGIG 94 (376)
T ss_pred CCcCccCCeEEE-ECCEEEEEeCC-C-----CCeEEEEECCCCCCCeEEC--C-cCCCCCcccceEEEECCEEEEEcCCC
Confidence 343434333333 45567664332 1 13477777642 3456543 3 455 5899999999999999999986
Q ss_pred CCCC--ccCCCceEEEEECCCCcEEeCCCCCCCCCCCCCCcccCCCCccccccccccEEEEE-ECCeEEEEccccC
Q 004569 100 GGGR--MVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAA-VGDLIFIYGGLRG 172 (744)
Q Consensus 100 ~~~~--~~~~~~sv~~yD~~t~~W~~~~~~~~~~R~g~~~~~~~~~d~~~~~~~R~~Hsa~v-~~~~IYV~GG~~g 172 (744)
.... ......++++||+.+++|..++.+.+. .|+.|++++ ++++|||+||.++
T Consensus 95 ~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~--------------------~~~~~~~~~~~~~~IYv~GG~~~ 150 (376)
T PRK14131 95 KTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPV--------------------GLAGHVAVSLHNGKAYITGGVNK 150 (376)
T ss_pred CCCCCCceeEcccEEEEeCCCCEEEeCCCCCCC--------------------cccceEEEEeeCCEEEEECCCCH
Confidence 4110 001123499999999999998754344 244588877 8999999999754
No 57
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.20 E-value=1.3e-10 Score=129.08 Aligned_cols=132 Identities=14% Similarity=0.087 Sum_probs=85.5
Q ss_pred CcceeeeeccCCEEEEEEeccCC-----CCccceeEEEEecCCCCceEEEEcCCCCCCCCceeEEEE-ECCEEEEEeccC
Q 004569 26 CSVYCCNACAIDVIFCCLFWLLW-----FLQPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVF-VNARLHVSGGAL 99 (744)
Q Consensus 26 ~~~~~~~~~~~~~ifgg~gg~~~-----~~~~l~D~~~l~~~~~~~W~w~~~~g~~P~pR~~Hsaa~-~g~~LyV~GG~~ 99 (744)
+..+++ ....+.||+. ||... ....++++|.|+...+ +|+-+. ..+|.+|+.|++++ .+++|||+||..
T Consensus 75 r~~~~~-v~~~~~IYV~-GG~~~~~~~~~~~~~~~v~~YD~~~n-~W~~~~--~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 75 REQAVA-AFIDGKLYVF-GGIGKTNSEGSPQVFDDVYKYDPKTN-SWQKLD--TRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred cccceE-EEECCEEEEE-cCCCCCCCCCceeEcccEEEEeCCCC-EEEeCC--CCCCCcccceEEEEeeCCEEEEECCCC
Confidence 433333 3345566664 33322 1245789999987643 555543 23577788898877 899999999975
Q ss_pred CCC--Ccc----------------------------CCCceEEEEECCCCcEEeCCCCCCCCCCCCCCcccCCCCccccc
Q 004569 100 GGG--RMV----------------------------EDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVEL 149 (744)
Q Consensus 100 ~~~--~~~----------------------------~~~~sv~~yD~~t~~W~~~~~~~~~~R~g~~~~~~~~~d~~~~~ 149 (744)
... ..+ ...+.+++||+.+++|..+.+++.++
T Consensus 150 ~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~------------------ 211 (376)
T PRK14131 150 KNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLG------------------ 211 (376)
T ss_pred HHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCC------------------
Confidence 310 000 01245999999999999988775543
Q ss_pred cccccEEEEEECCeEEEEccccCC-ccccccccc
Q 004569 150 TRRCRHAAAAVGDLIFIYGGLRGG-VLLDDLLVA 182 (744)
Q Consensus 150 ~~R~~Hsa~v~~~~IYV~GG~~g~-~~l~dv~~~ 182 (744)
|+.|++++++++|||+||.... ....+++.|
T Consensus 212 --~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~ 243 (376)
T PRK14131 212 --TAGSAVVIKGNKLWLINGEIKPGLRTDAVKQG 243 (376)
T ss_pred --CCcceEEEECCEEEEEeeeECCCcCChhheEE
Confidence 5559999999999999997433 233444443
No 58
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.09 E-value=9.6e-10 Score=103.56 Aligned_cols=162 Identities=23% Similarity=0.244 Sum_probs=100.4
Q ss_pred ceEEEecCCCCHHHH---HHHH-HHhCCCCCCCCcceeeEEeeccccCCCCChHHHHHHH--HHhhhhCCCCeEEEecCc
Q 004569 445 PIKIFGDLHGQFGDL---MRLF-DEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLL--LALKVEYPNNVHLIRGNH 518 (744)
Q Consensus 445 pi~VvGDIHG~~~dL---~~il-~~~g~p~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL--~~LK~~~P~~v~lLRGNH 518 (744)
+|+++||+|+..... .+.+ ........+ .+|++||++|++..+.+..... ...+...+..+++++|||
T Consensus 2 ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d------~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNH 75 (200)
T PF00149_consen 2 RILVISDLHGGYDDDSDAFRKLDEIAAENKPD------FIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNH 75 (200)
T ss_dssp EEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTS------EEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TT
T ss_pred eEEEEcCCCCCCcchhHHHHHHHHHhccCCCC------EEEeeccccccccccccchhhhccchhhhhcccccccccccc
Confidence 689999999999987 3333 332222222 6899999999999988877765 555666778999999999
Q ss_pred cccchhhhcCChHHHHHHh-Ccc-----------------------------cchhhhhhhhhHhhccceeeEEeCcEEE
Q 004569 519 EAADINALFGFRIECIERM-GER-----------------------------DGIWAWHRINRLFNWLPLAALIEKKIIC 568 (744)
Q Consensus 519 E~~~l~~~~gf~~E~~~~~-g~~-----------------------------~~~~~~~~~~~~f~~LPlaa~i~~~il~ 568 (744)
|.......+.......... ... ............+............|++
T Consensus 76 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 155 (200)
T PF00149_consen 76 DYYSGNSFYGFYDYQFEDYYGNYNYYYSYFNNKVIFDNDNFWFNSGNNEYPDYGMEAQQEWWLWLLLLLEAKNDDPVIVF 155 (200)
T ss_dssp SSHHHHHHHHHHHHHHSSEEECSSEEECTESSEEEEEETTEEEEEHCCHTHHSEHHHHHHHHHHHHHHHHEEEESEEEEE
T ss_pred ccceeccccccccccccccccccccccccCcceeeecccccccccccccccccccccchhcccccccccccccccceeEE
Confidence 9987654433332221100 000 0000111112222222333344567899
Q ss_pred ecCCCCCCCCChhhhhhccCCccccCCcceeeeccccCCCCCCCCCCcccCCCCCCceeeCHHHHHHHHHHcCCeEEEEc
Q 004569 569 MHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRA 648 (744)
Q Consensus 569 vHGGi~~~~~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~Fg~~~v~~fL~~n~l~~IIRg 648 (744)
+|.++.+........ .....+.+.+..++++.++++++.|
T Consensus 156 ~H~p~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~v~~~~~G 195 (200)
T PF00149_consen 156 THHPPYSSSSDSSSY----------------------------------------GNESKGREALEELLKKYNVDLVLSG 195 (200)
T ss_dssp ESSSSSTTSSSTHHH----------------------------------------SSEEEHHHHHHHHHHHTTCSEEEEE
T ss_pred EecCCCCcccccccc----------------------------------------chhhccHHHHHHHHhhCCCCEEEeC
Confidence 999987653211111 0135678899999999999999999
Q ss_pred cccc
Q 004569 649 HECV 652 (744)
Q Consensus 649 He~v 652 (744)
|.-.
T Consensus 196 H~H~ 199 (200)
T PF00149_consen 196 HTHR 199 (200)
T ss_dssp SSSS
T ss_pred ceec
Confidence 9753
No 59
>COG0639 ApaH Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]
Probab=98.85 E-value=5.9e-09 Score=98.17 Aligned_cols=147 Identities=35% Similarity=0.484 Sum_probs=117.2
Q ss_pred chhhhcCChHHHHHHhCcccchhhhhh---hhhHhhccceeeEEeC-cEEEecCCCCCCC-CChhhhhhccCCc--cccC
Q 004569 522 DINALFGFRIECIERMGERDGIWAWHR---INRLFNWLPLAALIEK-KIICMHGGIGRSI-NHVEQIENLQRPI--TMEA 594 (744)
Q Consensus 522 ~l~~~~gf~~E~~~~~g~~~~~~~~~~---~~~~f~~LPlaa~i~~-~il~vHGGi~~~~-~~l~~I~~i~Rp~--~~~~ 594 (744)
.+...+|+.+++...++.. ..|.. +.++|+.||+.+++++ .++|.|+++++.+ ..+++++.+.|.. .+..
T Consensus 2 ~l~~~~~~~~~~~~~~~~~---~~w~~~~g~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 78 (155)
T COG0639 2 LLTALYGFYDEKLRKYGEE---LEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGLSPGLDRLLDIIEVLDRLRACEVPH 78 (155)
T ss_pred hhhhhhchhHHhhhhcCCc---eeeeeccchhhHHHhhhHHHHhcCCceeeecCCCCcchhhhHHHHHHHhhhhcccCCC
Confidence 3556788888887777643 34655 9999999999999988 9999999999976 6788888877765 3333
Q ss_pred CcceeeeccccCCCCCCCCCCcccCCCCCCceeeCHHHHHHHHHHcCCeEEEEcccccccceEEecCCeEEEEeccCCCC
Q 004569 595 GSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYC 674 (744)
Q Consensus 595 ~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~Fg~~~v~~fL~~n~l~~IIRgHe~v~~G~~~~~~~~liTVFSa~nY~ 674 (744)
.+ ...+.+|++|... ....|.+.+||.+. .| .+....|+..+....+.|+|+.+..++...+++..+|.|++++||
T Consensus 79 ~g-~~~~~~~~~~~~~-~~~~w~~~~~g~~~-~~-~~~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~~~lt~~~~~~~~ 154 (155)
T COG0639 79 AG-HTHDLLWSDPDGG-DRRIWNPGPRGVPR-DG-GDVTAVFGIVHTPKLIERAHVLYDIDTGAVFGGGLLTAFSAPNYC 154 (155)
T ss_pred cc-ccccccCCCCCCC-cccccccCCCCCCc-cc-cchhhHHhhhcccceEEEEeEEEecCceEEeCCCeeeEEeccccc
Confidence 33 5566699998752 25678999999983 34 678888998888888999999999999988876889999999997
Q ss_pred C
Q 004569 675 G 675 (744)
Q Consensus 675 ~ 675 (744)
.
T Consensus 155 ~ 155 (155)
T COG0639 155 Y 155 (155)
T ss_pred C
Confidence 3
No 60
>PF13964 Kelch_6: Kelch motif
Probab=98.81 E-value=1.1e-08 Score=80.51 Aligned_cols=47 Identities=32% Similarity=0.564 Sum_probs=40.7
Q ss_pred CCceeEEEEECCEEEEEeccCCCCCccCCCceEEEEECCCCcEEeCCCCC
Q 004569 79 PRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVV 128 (744)
Q Consensus 79 pR~~Hsaa~~g~~LyV~GG~~~~~~~~~~~~sv~~yD~~t~~W~~~~~~~ 128 (744)
||.+|++++++++|||+||........++ +++||+++++|+.+++|+
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~---v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSND---VERYDPETNTWEQLPPMP 47 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCcccc---EEEEcCCCCcEEECCCCC
Confidence 79999999999999999998774334444 999999999999998874
No 61
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.72 E-value=4.2e-07 Score=88.02 Aligned_cols=59 Identities=24% Similarity=0.389 Sum_probs=48.0
Q ss_pred ceEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCcccc
Q 004569 445 PIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAA 521 (744)
Q Consensus 445 pi~VvGDIHG~~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~ 521 (744)
++.+++|+||++..+.++++.+.. .+ .++++||+++++.... ++ ....+++++||||..
T Consensus 1 ~i~~isD~H~~~~~~~~~~~~~~~--~d------~ii~~GD~~~~~~~~~--------~~--~~~~~~~V~GNhD~~ 59 (155)
T cd00841 1 KIGVISDTHGSLELLEKALELFGD--VD------LIIHAGDVLYPGPLNE--------LE--LKAPVIAVRGNCDGE 59 (155)
T ss_pred CEEEEecCCCCHHHHHHHHHHhcC--CC------EEEECCccccccccch--------hh--cCCcEEEEeCCCCCc
Confidence 478999999999999999998754 23 7999999999998765 11 224699999999974
No 62
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=98.69 E-value=3e-07 Score=88.30 Aligned_cols=61 Identities=30% Similarity=0.486 Sum_probs=45.0
Q ss_pred CceEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccccc
Q 004569 444 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAAD 522 (744)
Q Consensus 444 ~pi~VvGDIHG~~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~ 522 (744)
++|.++||+|++...+.++++.+. ..+ .++++||++|+ .+++..+..+ .+++++||||...
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~~--~~d------~vi~~GDi~~~----~~~~~~~~~~------~~~~v~GNHD~~~ 61 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYIN--EPD------FVIILGDIFDP----EEVLELLRDI------PVYVVRGNHDNWA 61 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHHT--TES------EEEEES-SCSH----HHHHHHHHHH------EEEEE--CCHSTH
T ss_pred CEEEEEeCCCCChhHHHHHHHHhc--CCC------EEEECCCchhH----HHHHHHHhcC------CEEEEeCCccccc
Confidence 478999999999999999999982 222 68999999993 7777777554 6999999999644
No 63
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.64 E-value=7e-08 Score=75.76 Aligned_cols=46 Identities=37% Similarity=0.676 Sum_probs=38.3
Q ss_pred CCceeEEEEECCEEEEEecc--CCCCCccCCCceEEEEECCCCcEEeCCCC
Q 004569 79 PRYQHAAVFVNARLHVSGGA--LGGGRMVEDSSSVAVLDTAAGVWCDTKSV 127 (744)
Q Consensus 79 pR~~Hsaa~~g~~LyV~GG~--~~~~~~~~~~~sv~~yD~~t~~W~~~~~~ 127 (744)
||++|++++++++||||||. .......++ +++||+++.+|+.++.+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~---v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSND---VWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccce---eEEEECCCCEEeecCCC
Confidence 69999999999999999999 332333444 99999999999988765
No 64
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.59 E-value=1.2e-06 Score=85.49 Aligned_cols=62 Identities=19% Similarity=0.253 Sum_probs=47.4
Q ss_pred CceEEEecCCCCHHHHHHHHHHhCCC-CCCCCcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccc
Q 004569 444 APIKIFGDLHGQFGDLMRLFDEYGSP-STAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEA 520 (744)
Q Consensus 444 ~pi~VvGDIHG~~~dL~~il~~~g~p-~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~ 520 (744)
+++.|++|+||++..+..+++..... ..+ .++++||++ +.+++.+|..+. ..++.++||||.
T Consensus 1 m~i~viSD~H~~~~~~~~~~~~~~~~~~~d------~ii~~GD~~-----~~~~~~~l~~~~----~~~~~V~GN~D~ 63 (158)
T TIGR00040 1 MKILVISDTHGPLRATELPVELFNLESNVD------LVIHAGDLT-----SPFVLKEFEDLA----AKVIAVRGNNDG 63 (158)
T ss_pred CEEEEEecccCCcchhHhHHHHHhhccCCC------EEEEcCCCC-----CHHHHHHHHHhC----CceEEEccCCCc
Confidence 46899999999998777666655433 233 799999999 467777776542 359999999997
No 65
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.58 E-value=5e-08 Score=75.44 Aligned_cols=46 Identities=35% Similarity=0.546 Sum_probs=38.6
Q ss_pred CCceeEEEEECCEEEEEeccCCCCCccCCCceEEEEECCCCcEEeCCCC
Q 004569 79 PRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSV 127 (744)
Q Consensus 79 pR~~Hsaa~~g~~LyV~GG~~~~~~~~~~~~sv~~yD~~t~~W~~~~~~ 127 (744)
||.+|++++++++|||+||........ +++++||+++++|..+++|
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~---~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPT---NSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBE---EEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCcee---eeEEEEeCCCCEEEEcCCC
Confidence 699999999999999999998733344 4499999999999987765
No 66
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.55 E-value=7.2e-08 Score=75.42 Aligned_cols=46 Identities=30% Similarity=0.578 Sum_probs=31.1
Q ss_pred CCceeEEEEE-CCEEEEEeccCCCCCccCCCceEEEEECCCCcEEeCCCC
Q 004569 79 PRYQHAAVFV-NARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSV 127 (744)
Q Consensus 79 pR~~Hsaa~~-g~~LyV~GG~~~~~~~~~~~~sv~~yD~~t~~W~~~~~~ 127 (744)
||++|+++.+ +++||||||.+..+..+++ +|+||+++++|.+++.+
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d---~~~~d~~~~~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLND---LWIFDIETNTWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE------EEEEETTTTEEEE--SS
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCC---EEEEECCCCEEEECCCC
Confidence 7999999999 4899999999875556777 99999999999998554
No 67
>PRK09453 phosphodiesterase; Provisional
Probab=98.55 E-value=1.5e-07 Score=94.05 Aligned_cols=68 Identities=19% Similarity=0.342 Sum_probs=53.7
Q ss_pred CceEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCC--------hHHHHHHHHHhhhhCCCCeEEEe
Q 004569 444 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQH--------SLETITLLLALKVEYPNNVHLIR 515 (744)
Q Consensus 444 ~pi~VvGDIHG~~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~--------slEvl~lL~~LK~~~P~~v~lLR 515 (744)
+++.|++|+||++..+.++++.+.....+ .++++||++|+|++ ..+++.+|..+ ...+++++
T Consensus 1 mri~viSD~Hg~~~~~~~~l~~~~~~~~d------~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~----~~~v~~V~ 70 (182)
T PRK09453 1 MKLMFASDTHGSLPATEKALELFAQSGAD------WLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAY----ADKIIAVR 70 (182)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhcCCC------EEEEcccccccCcCCCCccccCHHHHHHHHHhc----CCceEEEc
Confidence 47899999999999999999887433333 79999999999873 45677766554 24799999
Q ss_pred cCcccc
Q 004569 516 GNHEAA 521 (744)
Q Consensus 516 GNHE~~ 521 (744)
||||..
T Consensus 71 GNhD~~ 76 (182)
T PRK09453 71 GNCDSE 76 (182)
T ss_pred cCCcch
Confidence 999974
No 68
>PLN02772 guanylate kinase
Probab=98.54 E-value=2.9e-07 Score=101.76 Aligned_cols=85 Identities=20% Similarity=0.283 Sum_probs=68.6
Q ss_pred CCCCCceeEEEEECCEEEEEeccCCCCCccCCCceEEEEECCCCcEEe--CCCCCCCCCCCCCCcccCCCCccccccccc
Q 004569 76 SPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCD--TKSVVTSPRTGRYSADAAGGDAAVELTRRC 153 (744)
Q Consensus 76 ~P~pR~~Hsaa~~g~~LyV~GG~~~~~~~~~~~~sv~~yD~~t~~W~~--~~~~~~~~R~g~~~~~~~~~d~~~~~~~R~ 153 (744)
-+.||..|+++.+++++||+||++..+...+. +++||+.+.+|.. +.+.+|.||.|
T Consensus 21 ~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~---v~i~D~~t~~W~~P~V~G~~P~~r~G------------------- 78 (398)
T PLN02772 21 GVKPKNRETSVTIGDKTYVIGGNHEGNTLSIG---VQILDKITNNWVSPIVLGTGPKPCKG------------------- 78 (398)
T ss_pred cCCCCCcceeEEECCEEEEEcccCCCccccce---EEEEECCCCcEecccccCCCCCCCCc-------------------
Confidence 46789999999999999999998875434445 9999999999995 55778887777
Q ss_pred cEEEEEE-CCeEEEEccccCCcccccccccccc
Q 004569 154 RHAAAAV-GDLIFIYGGLRGGVLLDDLLVAEDL 185 (744)
Q Consensus 154 ~Hsa~v~-~~~IYV~GG~~g~~~l~dv~~~D~~ 185 (744)
|+++++ +++|+|+++..+. -+++|.+...
T Consensus 79 -hSa~v~~~~rilv~~~~~~~--~~~~w~l~~~ 108 (398)
T PLN02772 79 -YSAVVLNKDRILVIKKGSAP--DDSIWFLEVD 108 (398)
T ss_pred -ceEEEECCceEEEEeCCCCC--ccceEEEEcC
Confidence 999999 5799999985543 3677776644
No 69
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=98.50 E-value=1e-06 Score=91.34 Aligned_cols=71 Identities=11% Similarity=0.167 Sum_probs=56.2
Q ss_pred CceEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCcccc
Q 004569 444 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAA 521 (744)
Q Consensus 444 ~pi~VvGDIHG~~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~ 521 (744)
.+|.+++||||++..|.++++.......+ .+|++||++++|+..-++..++..|.. .+..++.++||||..
T Consensus 5 ~kIl~iSDiHgn~~~le~l~~~~~~~~~D------~vv~~GDl~~~g~~~~~~~~~l~~l~~-l~~pv~~V~GNhD~~ 75 (224)
T cd07388 5 RYVLATSNPKGDLEALEKLVGLAPETGAD------AIVLIGNLLPKAAKSEDYAAFFRILGE-AHLPTFYVPGPQDAP 75 (224)
T ss_pred eEEEEEEecCCCHHHHHHHHHHHhhcCCC------EEEECCCCCCCCCCHHHHHHHHHHHHh-cCCceEEEcCCCChH
Confidence 46999999999999999999876433333 699999999999777677766666642 334799999999975
No 70
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.50 E-value=6.7e-07 Score=84.95 Aligned_cols=118 Identities=20% Similarity=0.242 Sum_probs=77.6
Q ss_pred ceEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChH--HHHHHHHHhhhhCCCCeEEEecCccccc
Q 004569 445 PIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSL--ETITLLLALKVEYPNNVHLIRGNHEAAD 522 (744)
Q Consensus 445 pi~VvGDIHG~~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~sl--Evl~lL~~LK~~~P~~v~lLRGNHE~~~ 522 (744)
++.++||+||++. .+ .....+ .++++||+++++...- +.+.++..++ .| .++++.||||...
T Consensus 1 ~i~~isD~H~~~~----~~---~~~~~D------~vi~~GD~~~~~~~~~~~~~~~~l~~~~--~~-~~~~v~GNHD~~~ 64 (135)
T cd07379 1 RFVCISDTHSRHR----TI---SIPDGD------VLIHAGDLTERGTLEELQKFLDWLKSLP--HP-HKIVIAGNHDLTL 64 (135)
T ss_pred CEEEEeCCCCCCC----cC---cCCCCC------EEEECCCCCCCCCHHHHHHHHHHHHhCC--CC-eEEEEECCCCCcC
Confidence 4789999999987 11 112222 6889999999986532 3444444432 22 3678999999631
Q ss_pred hhhhcCChHHHHHHhCcccchhhhhhhhhHhhccceeeEEeCcEEEecCCCCCCCCChhhhhhccCCccccCCcceeeec
Q 004569 523 INALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDL 602 (744)
Q Consensus 523 l~~~~gf~~E~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHGGi~~~~~~l~~I~~i~Rp~~~~~~~~~~~dl 602 (744)
. .-+.+++++||.+.....+
T Consensus 65 ~-------------------------------------~~~~~ilv~H~~p~~~~~~----------------------- 84 (135)
T cd07379 65 D-------------------------------------PEDTDILVTHGPPYGHLDL----------------------- 84 (135)
T ss_pred C-------------------------------------CCCCEEEEECCCCCcCccc-----------------------
Confidence 1 1134789999964321000
Q ss_pred cccCCCCCCCCCCcccCCCCCCceeeCHHHHHHHHHHcCCeEEEEcccccccceE
Q 004569 603 LWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFE 657 (744)
Q Consensus 603 LWsDP~~~~~~~g~~~n~Rg~g~~~Fg~~~v~~fL~~n~l~~IIRgHe~v~~G~~ 657 (744)
++ + . ...|...+.+++++.+.+++|-||.-.+.|++
T Consensus 85 ~~--~----------------~-~~~g~~~~~~~~~~~~~~~~i~GH~H~~~~~~ 120 (135)
T cd07379 85 VS--S----------------G-QRVGCEELLNRVQRVRPKLHVFGHIHEGYGAE 120 (135)
T ss_pred cc--c----------------C-cccCCHHHHHHHHHHCCcEEEEcCcCCcCcee
Confidence 00 0 0 23577889999999999999999999988887
No 71
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=98.40 E-value=3.6e-06 Score=87.79 Aligned_cols=113 Identities=23% Similarity=0.213 Sum_probs=73.3
Q ss_pred ceEEEecCCCCHHHHH-HHHHHhCCCCCCCCcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccccch
Q 004569 445 PIKIFGDLHGQFGDLM-RLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 523 (744)
Q Consensus 445 pi~VvGDIHG~~~dL~-~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~l 523 (744)
+|+++|||||++.... +.++..+ .+ .+||+||+++. +.+++..|..+ |..++.++||||....
T Consensus 2 rIa~isDiHg~~~~~~~~~l~~~~---pD------~Vl~~GDi~~~---~~~~~~~l~~l----~~p~~~V~GNHD~~~~ 65 (238)
T cd07397 2 RIAIVGDVHGQWDLEDIKALHLLQ---PD------LVLFVGDFGNE---SVQLVRAISSL----PLPKAVILGNHDAWYD 65 (238)
T ss_pred EEEEEecCCCCchHHHHHHHhccC---CC------EEEECCCCCcC---hHHHHHHHHhC----CCCeEEEcCCCccccc
Confidence 5899999999987642 3343322 22 69999999864 57777776654 3458999999997553
Q ss_pred hh---hcC-----------------------------------------Ch-HHHHHHhCcccchhhhhhhhhHhhccce
Q 004569 524 NA---LFG-----------------------------------------FR-IECIERMGERDGIWAWHRINRLFNWLPL 558 (744)
Q Consensus 524 ~~---~~g-----------------------------------------f~-~E~~~~~g~~~~~~~~~~~~~~f~~LPl 558 (744)
.. .+. +. .++...|+ -...++.+..+++.++.
T Consensus 66 ~~~~~k~~~l~~~L~~lg~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fg---i~s~~eA~~~ive~~~~ 142 (238)
T cd07397 66 ATFRKKGDRVQEQLELLGDLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYG---VISLEESAQRIIAAAKK 142 (238)
T ss_pred ccccchHHHHHHHHHHhCCcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhC---CCCHHHHHHHHHHHhhh
Confidence 20 000 01 14455554 22455667777888864
Q ss_pred eeEEeCcEEEecCCCCCC
Q 004569 559 AALIEKKIICMHGGIGRS 576 (744)
Q Consensus 559 aa~i~~~il~vHGGi~~~ 576 (744)
+......||+.|+++...
T Consensus 143 ~~~~~~~VliaH~~~~G~ 160 (238)
T cd07397 143 APPDLPLILLAHNGPSGL 160 (238)
T ss_pred cCCCCCeEEEeCcCCcCC
Confidence 444345799999998754
No 72
>PF13854 Kelch_5: Kelch motif
Probab=98.30 E-value=1.4e-06 Score=66.26 Aligned_cols=40 Identities=40% Similarity=0.643 Sum_probs=34.2
Q ss_pred CCCCCceeEEEEECCEEEEEeccCC-CCCccCCCceEEEEECCC
Q 004569 76 SPSPRYQHAAVFVNARLHVSGGALG-GGRMVEDSSSVAVLDTAA 118 (744)
Q Consensus 76 ~P~pR~~Hsaa~~g~~LyV~GG~~~-~~~~~~~~~sv~~yD~~t 118 (744)
+|.||++|++++++++|||+||... ....+++ +|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d---~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSND---LYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECc---EEEEECCC
Confidence 4899999999999999999999984 4455666 99999876
No 73
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.29 E-value=2e-06 Score=67.48 Aligned_cols=42 Identities=33% Similarity=0.597 Sum_probs=32.0
Q ss_pred CCEEEEEeccC-CCCCccCCCceEEEEECCCCcEEeCCCCCCCCCCC
Q 004569 89 NARLHVSGGAL-GGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTG 134 (744)
Q Consensus 89 g~~LyV~GG~~-~~~~~~~~~~sv~~yD~~t~~W~~~~~~~~~~R~g 134 (744)
|++||||||.+ .....+++ +|+||+.+++|+++.. .|++|.+
T Consensus 1 g~~~~vfGG~~~~~~~~~nd---~~~~~~~~~~W~~~~~-~P~~R~~ 43 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLND---VWVFDLDTNTWTRIGD-LPPPRSG 43 (49)
T ss_pred CCEEEEECCcCCCCCCEecC---EEEEECCCCEEEECCC-CCCCccc
Confidence 68999999998 33445666 9999999999999854 4554444
No 74
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.29 E-value=6.9e-06 Score=75.03 Aligned_cols=117 Identities=23% Similarity=0.374 Sum_probs=82.6
Q ss_pred EEEecCCCCHHHHHHHH--HHhCCCCCCCCcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccccchh
Q 004569 447 KIFGDLHGQFGDLMRLF--DEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADIN 524 (744)
Q Consensus 447 ~VvGDIHG~~~dL~~il--~~~g~p~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~l~ 524 (744)
+++||+|+......... ........+ .+|++||+++.+....+........+......++++.||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~------~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD----- 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPD------FVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD----- 69 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCC------EEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce-----
Confidence 47999999998888765 222222222 68999999999998877666534444455678999999999
Q ss_pred hhcCChHHHHHHhCcccchhhhhhhhhHhhccceeeEEeCcEEEecCCCCCCCCChhhhhhccCCccccCCcceeeeccc
Q 004569 525 ALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLW 604 (744)
Q Consensus 525 ~~~gf~~E~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHGGi~~~~~~l~~I~~i~Rp~~~~~~~~~~~dlLW 604 (744)
++++|..+.+..... ..
T Consensus 70 -----------------------------------------i~~~H~~~~~~~~~~--------------~~-------- 86 (131)
T cd00838 70 -----------------------------------------ILLTHGPPYDPLDEL--------------SP-------- 86 (131)
T ss_pred -----------------------------------------EEEeccCCCCCchhh--------------cc--------
Confidence 889999886542100 00
Q ss_pred cCCCCCCCCCCcccCCCCCCceeeCHHHHHHHHHHcCCeEEEEcccccccceE
Q 004569 605 SDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFE 657 (744)
Q Consensus 605 sDP~~~~~~~g~~~n~Rg~g~~~Fg~~~v~~fL~~n~l~~IIRgHe~v~~G~~ 657 (744)
. .......+...+...+.+++|-||.-....+.
T Consensus 87 ~--------------------~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~ 119 (131)
T cd00838 87 D--------------------EDPGSEALLELLEKYGVDLVLSGHTHVYERRE 119 (131)
T ss_pred c--------------------chhhHHHHHHHHHHhCCCEEEeCCeecccccc
Confidence 0 00145678888999999999999998765554
No 75
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.22 E-value=4.2e-06 Score=89.98 Aligned_cols=110 Identities=16% Similarity=0.218 Sum_probs=79.0
Q ss_pred CCEEEEEEeccCCCCccceeEEEEecCCC-CceEEEEcCCCCCCCCceeEEEEECCEEEEEeccCCCCC-ccCCCceEEE
Q 004569 36 IDVIFCCLFWLLWFLQPLASAYGLAKHRD-GRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGR-MVEDSSSVAV 113 (744)
Q Consensus 36 ~~~ifgg~gg~~~~~~~l~D~~~l~~~~~-~~W~w~~~~g~~P~pR~~Hsaa~~g~~LyV~GG~~~~~~-~~~~~~sv~~ 113 (744)
.+.+|+|+|..+ ..-|.|+.... ..|+.+.. -+-.+|.+..+++++++||||||...... .....+++++
T Consensus 46 g~~~YVGLGs~G------~afy~ldL~~~~k~W~~~a~--FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~ 117 (381)
T COG3055 46 GDTVYVGLGSAG------TAFYVLDLKKPGKGWTKIAD--FPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYR 117 (381)
T ss_pred cceEEEEeccCC------ccceehhhhcCCCCceEccc--CCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEE
Confidence 457899876221 23455666543 34666654 34567999999999999999999764322 1223455999
Q ss_pred EECCCCcEEeCCCCCCCCCCCCCCcccCCCCccccccccccEEEEEECC-eEEEEccccCC
Q 004569 114 LDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGD-LIFIYGGLRGG 173 (744)
Q Consensus 114 yD~~t~~W~~~~~~~~~~R~g~~~~~~~~~d~~~~~~~R~~Hsa~v~~~-~IYV~GG~~g~ 173 (744)
||+.+++|..+....|..-.| |+++.+++ +||++||.+..
T Consensus 118 y~p~~nsW~kl~t~sP~gl~G--------------------~~~~~~~~~~i~f~GGvn~~ 158 (381)
T COG3055 118 YDPSTNSWHKLDTRSPTGLVG--------------------ASTFSLNGTKIYFFGGVNQN 158 (381)
T ss_pred ecCCCChhheecccccccccc--------------------ceeEecCCceEEEEccccHH
Confidence 999999999887776665455 89999988 99999998643
No 76
>PF13854 Kelch_5: Kelch motif
Probab=98.09 E-value=3.1e-06 Score=64.35 Aligned_cols=36 Identities=36% Similarity=0.620 Sum_probs=31.9
Q ss_pred ccccEEEEEECCeEEEEccccC--Cccccccccccccc
Q 004569 151 RRCRHAAAAVGDLIFIYGGLRG--GVLLDDLLVAEDLA 186 (744)
Q Consensus 151 ~R~~Hsa~v~~~~IYV~GG~~g--~~~l~dv~~~D~~~ 186 (744)
+|.+|++++++++||||||.++ ...++|+|+||..+
T Consensus 4 ~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 4 PRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 5777999999999999999984 67899999999875
No 77
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.09 E-value=0.00016 Score=72.35 Aligned_cols=58 Identities=24% Similarity=0.441 Sum_probs=42.1
Q ss_pred ceEEEecCC-CCHH-----HHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCc
Q 004569 445 PIKIFGDLH-GQFG-----DLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNH 518 (744)
Q Consensus 445 pi~VvGDIH-G~~~-----dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNH 518 (744)
.|.||+|.| |.-. .+.++++. ...+ .++.+||+++ .+++.+|..++ ..++.++|||
T Consensus 1 ~i~viSDtHl~~~~~~~~~~~~~~~~~---~~~d------~iih~GDi~~-----~~~~~~l~~~~----~~~~~V~GN~ 62 (178)
T cd07394 1 LVLVIGDLHIPHRASDLPAKFKKLLVP---GKIQ------HVLCTGNLCS-----KETYDYLKTIA----PDVHIVRGDF 62 (178)
T ss_pred CEEEEEecCCCCCchhhHHHHHHHhcc---CCCC------EEEECCCCCC-----HHHHHHHHhhC----CceEEEECCC
Confidence 378999999 6543 35555544 1222 7999999987 77777776653 2599999999
Q ss_pred cc
Q 004569 519 EA 520 (744)
Q Consensus 519 E~ 520 (744)
|.
T Consensus 63 D~ 64 (178)
T cd07394 63 DE 64 (178)
T ss_pred Cc
Confidence 96
No 78
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=98.03 E-value=0.00012 Score=72.48 Aligned_cols=65 Identities=25% Similarity=0.323 Sum_probs=44.5
Q ss_pred eEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCCh-HHHHHHHHHhhhhCCCCeEEEecCccccc
Q 004569 446 IKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS-LETITLLLALKVEYPNNVHLIRGNHEAAD 522 (744)
Q Consensus 446 i~VvGDIHG~~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~s-lEvl~lL~~LK~~~P~~v~lLRGNHE~~~ 522 (744)
|.++|||||++..+.. ........+ -+|+.||++++|... .+.+..|.. .+..++.+.||||...
T Consensus 1 i~~~sD~H~~~~~~~~--~~~~~~~~D------~vv~~GDl~~~~~~~~~~~~~~l~~----~~~p~~~v~GNHD~~~ 66 (188)
T cd07392 1 ILAISDIHGDVEKLEA--IILKAEEAD------AVIVAGDITNFGGKEAAVEINLLLA----IGVPVLAVPGNCDTPE 66 (188)
T ss_pred CEEEEecCCCHHHHHH--HHhhccCCC------EEEECCCccCcCCHHHHHHHHHHHh----cCCCEEEEcCCCCCHH
Confidence 5789999999998876 222212222 689999999998763 333333332 3456999999999743
No 79
>smart00612 Kelch Kelch domain.
Probab=97.93 E-value=1.5e-05 Score=60.64 Aligned_cols=47 Identities=32% Similarity=0.518 Sum_probs=36.0
Q ss_pred EEEEEeccCCCCCccCCCceEEEEECCCCcEEeCCCCCCCCCCCCCCcccCCCCccccccccccEEEEEECC
Q 004569 91 RLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGD 162 (744)
Q Consensus 91 ~LyV~GG~~~~~~~~~~~~sv~~yD~~t~~W~~~~~~~~~~R~g~~~~~~~~~d~~~~~~~R~~Hsa~v~~~ 162 (744)
+|||+||... ....+ ++++||+.+++|...++++. .|+.|+++++++
T Consensus 1 ~iyv~GG~~~-~~~~~---~v~~yd~~~~~W~~~~~~~~---------------------~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDG-GQRLK---SVEVYDPETNKWTPLPSMPT---------------------PRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCC-Cceee---eEEEECCCCCeEccCCCCCC---------------------ccccceEEEeCC
Confidence 4899999865 22334 49999999999999887733 377799988864
No 80
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=97.90 E-value=1.1e-05 Score=63.27 Aligned_cols=41 Identities=27% Similarity=0.472 Sum_probs=35.4
Q ss_pred ccccEEEEEECCeEEEEccc---cCCcccccccccccccccccc
Q 004569 151 RRCRHAAAAVGDLIFIYGGL---RGGVLLDDLLVAEDLAAAETT 191 (744)
Q Consensus 151 ~R~~Hsa~v~~~~IYV~GG~---~g~~~l~dv~~~D~~~~~~~~ 191 (744)
+|++|++++++++||||||+ .+...++++++||....+|..
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~ 44 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTE 44 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEee
Confidence 47889999999999999999 455678999999998877664
No 81
>PF13964 Kelch_6: Kelch motif
Probab=97.82 E-value=1.6e-05 Score=62.40 Aligned_cols=40 Identities=25% Similarity=0.425 Sum_probs=34.4
Q ss_pred ccccEEEEEECCeEEEEccccC-Cccccccccccccccccc
Q 004569 151 RRCRHAAAAVGDLIFIYGGLRG-GVLLDDLLVAEDLAAAET 190 (744)
Q Consensus 151 ~R~~Hsa~v~~~~IYV~GG~~g-~~~l~dv~~~D~~~~~~~ 190 (744)
+|+.|++++++++|||+||..+ ...++++++||...-.|.
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~ 41 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWE 41 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEE
Confidence 3788999999999999999987 678999999998765544
No 82
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.76 E-value=0.00028 Score=66.88 Aligned_cols=56 Identities=18% Similarity=0.142 Sum_probs=39.7
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCcc
Q 004569 447 KIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHE 519 (744)
Q Consensus 447 ~VvGDIHG~~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE 519 (744)
.|++|.||....+.++.... ...+ .++++||+. .+++..+..++ ...++.++||||
T Consensus 1 ~viSDtH~~~~~~~~~~~~~--~~~d------~ii~~GD~~------~~~~~~~~~~~---~~~~~~V~GN~D 56 (129)
T cd07403 1 LVISDTESPALYSPEIKVRL--EGVD------LILSAGDLP------KEYLEYLVTML---NVPVYYVHGNHD 56 (129)
T ss_pred CeeccccCccccchHHHhhC--CCCC------EEEECCCCC------hHHHHHHHHHc---CCCEEEEeCCCc
Confidence 38999999988777766652 2222 799999984 34556665542 235899999999
No 83
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=97.74 E-value=2.4e-05 Score=60.34 Aligned_cols=39 Identities=28% Similarity=0.420 Sum_probs=33.5
Q ss_pred ccccEEEEEECCeEEEEccccC-Ccccccccccccccccc
Q 004569 151 RRCRHAAAAVGDLIFIYGGLRG-GVLLDDLLVAEDLAAAE 189 (744)
Q Consensus 151 ~R~~Hsa~v~~~~IYV~GG~~g-~~~l~dv~~~D~~~~~~ 189 (744)
+|++|++++++++|||+||+++ ...++++++||...-.|
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 40 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTW 40 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEE
Confidence 4788999999999999999988 67899999999875443
No 84
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=97.72 E-value=9.1e-05 Score=77.52 Aligned_cols=70 Identities=20% Similarity=0.280 Sum_probs=47.3
Q ss_pred CceEEEecCCCC------HHHHHHHHHHhCCCCCCCCcceeeEEeeccccCC-------CCChHHHHHHHHHhhhhCCCC
Q 004569 444 APIKIFGDLHGQ------FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDR-------GQHSLETITLLLALKVEYPNN 510 (744)
Q Consensus 444 ~pi~VvGDIHG~------~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDR-------G~~slEvl~lL~~LK~~~P~~ 510 (744)
+++++++|+|.. ...|.++|+.... ..+ .++++||++|. .+...+++.+|..|+.. +..
T Consensus 1 M~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~-~~d------~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~-g~~ 72 (241)
T PRK05340 1 MPTLFISDLHLSPERPAITAAFLRFLRGEAR-QAD------ALYILGDLFEAWIGDDDPSPFAREIAAALKALSDS-GVP 72 (241)
T ss_pred CcEEEEeecCCCCCChhHHHHHHHHHHhhhc-cCC------EEEEccceeccccccCcCCHHHHHHHHHHHHHHHc-CCe
Confidence 478999999954 2235555543221 122 69999999985 23346777777777533 347
Q ss_pred eEEEecCcccc
Q 004569 511 VHLIRGNHEAA 521 (744)
Q Consensus 511 v~lLRGNHE~~ 521 (744)
+++++||||..
T Consensus 73 v~~v~GNHD~~ 83 (241)
T PRK05340 73 CYFMHGNRDFL 83 (241)
T ss_pred EEEEeCCCchh
Confidence 99999999973
No 85
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=97.71 E-value=4.2e-05 Score=84.99 Aligned_cols=147 Identities=16% Similarity=0.139 Sum_probs=94.9
Q ss_pred ccCCCCcceeeeeccC-CEEEEEEeccCCCCccceeEEEEecCCCCceEEEEcCCCCCCCCceeEEEEECC--EEEEEec
Q 004569 21 FVPHLCSVYCCNACAI-DVIFCCLFWLLWFLQPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNA--RLHVSGG 97 (744)
Q Consensus 21 ~~p~~~~~~~~~~~~~-~~ifgg~gg~~~~~~~l~D~~~l~~~~~~~W~w~~~~g~~P~pR~~Hsaa~~g~--~LyV~GG 97 (744)
..|.-+.++...-... +-+|.-+||. .-..+.|.|.+....+ .|.-+..-+..|-.|..|-++..-. +||+.|-
T Consensus 256 ~~p~~RgGHQMV~~~~~~CiYLYGGWd--G~~~l~DFW~Y~v~e~-~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~ 332 (723)
T KOG2437|consen 256 NRPGMRGGHQMVIDVQTECVYLYGGWD--GTQDLADFWAYSVKEN-QWTCINRDTEGPGARSCHRMVIDISRRKLYLLGR 332 (723)
T ss_pred cCccccCcceEEEeCCCcEEEEecCcc--cchhHHHHHhhcCCcc-eeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhh
Confidence 4455555555543332 2355533443 2346899998877643 4666555566899999999987765 8999996
Q ss_pred cCCCC--CccCCCceEEEEECCCCcEEeCCCCCCCCCCCCCCcccCCCCccccccccccEEEEEECCe--EEEEccccCC
Q 004569 98 ALGGG--RMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDL--IFIYGGLRGG 173 (744)
Q Consensus 98 ~~~~~--~~~~~~~sv~~yD~~t~~W~~~~~~~~~~R~g~~~~~~~~~d~~~~~~~R~~Hsa~v~~~~--IYV~GG~~g~ 173 (744)
+-+.. ..+..-+++|+||..++.|.-++-. ...-.| +..-+.|.+++.+.+ ||||||..-.
T Consensus 333 Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~d-t~~dGG--------------P~~vfDHqM~Vd~~k~~iyVfGGr~~~ 397 (723)
T KOG2437|consen 333 YLDSSVRNSKSLRSDFWRFDIDTNTWMLLSED-TAADGG--------------PKLVFDHQMCVDSEKHMIYVFGGRILT 397 (723)
T ss_pred ccccccccccccccceEEEecCCceeEEeccc-ccccCC--------------cceeecceeeEecCcceEEEecCeecc
Confidence 53321 1123335599999999999865532 121111 225778999999988 9999996322
Q ss_pred ---cccccccccccc
Q 004569 174 ---VLLDDLLVAEDL 185 (744)
Q Consensus 174 ---~~l~dv~~~D~~ 185 (744)
..+..++.||+.
T Consensus 398 ~~e~~f~GLYaf~~~ 412 (723)
T KOG2437|consen 398 CNEPQFSGLYAFNCQ 412 (723)
T ss_pred CCCccccceEEEecC
Confidence 246678888865
No 86
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=97.57 E-value=0.00039 Score=72.32 Aligned_cols=206 Identities=14% Similarity=0.179 Sum_probs=100.1
Q ss_pred eEEEecCCCCH------HHHHHHHHHhCCCCCCCCcceeeEEeeccccCCC-----CC--hHHHHHHHHHhhhhCCCCeE
Q 004569 446 IKIFGDLHGQF------GDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRG-----QH--SLETITLLLALKVEYPNNVH 512 (744)
Q Consensus 446 i~VvGDIHG~~------~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG-----~~--slEvl~lL~~LK~~~P~~v~ 512 (744)
+++++|+|... ..|++.+..... ..+ .++++||++|.. +. ..++..+|..|+.. +..|+
T Consensus 1 ~~~iSDlHl~~~~~~~~~~~l~~l~~~~~-~~d------~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~-~~~v~ 72 (231)
T TIGR01854 1 TLFISDLHLSPERPDITALFLDFLREEAR-KAD------ALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQ-GVPCY 72 (231)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHHhhhc-cCC------EEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHC-CCeEE
Confidence 36899999542 234555544321 222 699999999952 11 23456666666533 45799
Q ss_pred EEecCccccchhhhcCChHHHHHHhCcccchhhhhhhhhHhhccceeeEE-eCcEEEecCCCCCCCC-Chhhhhhc-cCC
Q 004569 513 LIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALI-EKKIICMHGGIGRSIN-HVEQIENL-QRP 589 (744)
Q Consensus 513 lLRGNHE~~~l~~~~gf~~E~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i-~~~il~vHGGi~~~~~-~l~~I~~i-~Rp 589 (744)
++.||||...-. ...+..| . .++.. +....+ +.+++++||-.-..-. ...-.+++ ..|
T Consensus 73 ~v~GNHD~~~~~-------~~~~~~g----i-------~~l~~-~~~~~~~g~~ill~HGd~~~~~d~~y~~~r~~~r~~ 133 (231)
T TIGR01854 73 FMHGNRDFLIGK-------RFAREAG----M-------TLLPD-PSVIDLYGQKVLLMHGDTLCTDDTAYQAFRAKVHQP 133 (231)
T ss_pred EEcCCCchhhhH-------HHHHHCC----C-------EEECC-CEEEEECCEEEEEEcCccccCCCHHHHHHHHHHhCH
Confidence 999999973210 0011111 0 11111 122222 4689999997653110 11111121 112
Q ss_pred ccc------cC-CcceeeeccccCCCCCCCCCCcccCCCCCCceeeCHHHHHHHHHHcCCeEEEEcccccccceEEecCC
Q 004569 590 ITM------EA-GSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQG 662 (744)
Q Consensus 590 ~~~------~~-~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~Fg~~~v~~fL~~n~l~~IIRgHe~v~~G~~~~~~~ 662 (744)
... +. ....+...+++-.... .. .+..-.....+..+.++++..+.+++|-||.-...=+.+..++
T Consensus 134 ~~~~~~~~l~~~~r~~l~~~~~~~s~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~GHtH~~~~~~~~~~~ 206 (231)
T TIGR01854 134 WLQRLFLHLPLAVRVKLARKIRAESRAD---KQ----MKSQDIMDVNPAEVAAVMRRYGVDRLIHGHTHRPAIHPLQADG 206 (231)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHh---cC----CCcchhhCCCHHHHHHHHHHcCCCEEEECCccCcceeecccCC
Confidence 100 00 0011222333321110 00 0001123346778899999999999999998664434333333
Q ss_pred eEEEEeccCCCCCCCCCeEEEEEEcCC
Q 004569 663 HLITLFSATNYCGTANNAGAILVLGRD 689 (744)
Q Consensus 663 ~liTVFSa~nY~~~~~N~gavl~i~~~ 689 (744)
.-++-+.-++.. ..+.+++++++
T Consensus 207 ~~~~~~~lgdW~----~~~~~~~~~~~ 229 (231)
T TIGR01854 207 QPATRIVLGDWY----RQGSILRVDAD 229 (231)
T ss_pred CccEEEEECCCc----cCCeEEEEcCC
Confidence 223444444442 22556666553
No 87
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=97.53 E-value=0.0015 Score=62.32 Aligned_cols=29 Identities=10% Similarity=0.167 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHcCCeEEEEcccccccceE
Q 004569 629 GPDRVMEFCNNNDLQLIVRAHECVMDGFE 657 (744)
Q Consensus 629 g~~~v~~fL~~n~l~~IIRgHe~v~~G~~ 657 (744)
+.+.+.+++++.+.++++-||.-....+.
T Consensus 101 ~~~~~~~~l~~~~~~~~l~GH~H~~~~~~ 129 (144)
T cd07400 101 DAGDALKLLAEAGVDLVLHGHKHVPYVGN 129 (144)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCcCeee
Confidence 45678899999999999999998765444
No 88
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=97.50 E-value=7.7e-05 Score=73.16 Aligned_cols=67 Identities=27% Similarity=0.236 Sum_probs=45.5
Q ss_pred eEEEecCCCCHHHHHHHHHH-hCCCCCCCCcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCcccc
Q 004569 446 IKIFGDLHGQFGDLMRLFDE-YGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAA 521 (744)
Q Consensus 446 i~VvGDIHG~~~dL~~il~~-~g~p~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~ 521 (744)
+.+++|||+....+...+.. ......+ -++++||+++++.....+. ++.. ...+..+++++||||..
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d------~li~~GDi~~~~~~~~~~~-~~~~--~~~~~~v~~v~GNHD~~ 68 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDAD------ILVLAGDIGYLTDAPRFAP-LLLA--LKGFEPVIYVPGNHEFY 68 (166)
T ss_pred CceEccccccCccccccccccCCCCCCC------EEEECCCCCCCcchHHHHH-HHHh--hcCCccEEEeCCCcceE
Confidence 46899999998777665431 1222222 6899999999987765544 2222 23346799999999985
No 89
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=97.49 E-value=0.00023 Score=75.93 Aligned_cols=69 Identities=20% Similarity=0.082 Sum_probs=49.7
Q ss_pred CceEEEecCCCC----HHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCC--CChHHHHHHHHHhhhhCCCCeEEEecC
Q 004569 444 APIKIFGDLHGQ----FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRG--QHSLETITLLLALKVEYPNNVHLIRGN 517 (744)
Q Consensus 444 ~pi~VvGDIHG~----~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG--~~slEvl~lL~~LK~~~P~~v~lLRGN 517 (744)
.+|++++|||.. ...+.++++.......+ -++++||++|++ ...-++...|..|+... .++.+.||
T Consensus 50 ~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pD------lVli~GD~~d~~~~~~~~~~~~~L~~L~~~~--pv~~V~GN 121 (271)
T PRK11340 50 FKILFLADLHYSRFVPLSLISDAIALGIEQKPD------LILLGGDYVLFDMPLNFSAFSDVLSPLAECA--PTFACFGN 121 (271)
T ss_pred cEEEEEcccCCCCcCCHHHHHHHHHHHHhcCCC------EEEEccCcCCCCccccHHHHHHHHHHHhhcC--CEEEecCC
Confidence 569999999976 45577777665432333 689999999953 33345667777776544 49999999
Q ss_pred ccc
Q 004569 518 HEA 520 (744)
Q Consensus 518 HE~ 520 (744)
||.
T Consensus 122 HD~ 124 (271)
T PRK11340 122 HDR 124 (271)
T ss_pred CCc
Confidence 996
No 90
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=97.46 E-value=0.00022 Score=73.05 Aligned_cols=70 Identities=30% Similarity=0.300 Sum_probs=49.9
Q ss_pred CceEEEecCCCCHH----HHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChH-HHHHHHHHhhhhCCCCeEEEecCc
Q 004569 444 APIKIFGDLHGQFG----DLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSL-ETITLLLALKVEYPNNVHLIRGNH 518 (744)
Q Consensus 444 ~pi~VvGDIHG~~~----dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~sl-Evl~lL~~LK~~~P~~v~lLRGNH 518 (744)
.++.+++|+|+... .+.++++.+.....+ -+++.||++|.+.... ++..++..++ .+..++++.|||
T Consensus 2 ~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d------~vl~~GD~~~~~~~~~~~~~~~l~~l~--~~~~v~~v~GNH 73 (223)
T cd07385 2 LRIAHLSDLHLGPFVSRERLERLVEKINALKPD------LVVLTGDLVDGSVDVLELLLELLKKLK--APLGVYAVLGNH 73 (223)
T ss_pred CEEEEEeecCCCccCCHHHHHHHHHHHhccCCC------EEEEcCcccCCcchhhHHHHHHHhccC--CCCCEEEECCCc
Confidence 46899999998743 566666665432222 6889999999988765 5555555543 335699999999
Q ss_pred ccc
Q 004569 519 EAA 521 (744)
Q Consensus 519 E~~ 521 (744)
|..
T Consensus 74 D~~ 76 (223)
T cd07385 74 DYY 76 (223)
T ss_pred ccc
Confidence 974
No 91
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=97.45 E-value=7.9e-05 Score=58.11 Aligned_cols=40 Identities=28% Similarity=0.489 Sum_probs=25.6
Q ss_pred ccccEEEEEEC-CeEEEEccccCC-ccccccccccccccccc
Q 004569 151 RRCRHAAAAVG-DLIFIYGGLRGG-VLLDDLLVAEDLAAAET 190 (744)
Q Consensus 151 ~R~~Hsa~v~~-~~IYV~GG~~g~-~~l~dv~~~D~~~~~~~ 190 (744)
+|+.|+++.++ ++||||||.+.. ..++|+++||...-.|+
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~ 42 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWT 42 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEE
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEE
Confidence 37889999994 899999999776 68999999998765554
No 92
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=97.43 E-value=0.012 Score=60.70 Aligned_cols=71 Identities=13% Similarity=0.111 Sum_probs=40.4
Q ss_pred eCHHHHHHHHHHc-CCeEEEEcccccccceEEe-----cCCeEEEEeccCCCCCCCCC-eEEEEEEcCC-ceEEEEEecC
Q 004569 628 FGPDRVMEFCNNN-DLQLIVRAHECVMDGFERF-----AQGHLITLFSATNYCGTANN-AGAILVLGRD-LVVVPKLIHP 699 (744)
Q Consensus 628 Fg~~~v~~fL~~n-~l~~IIRgHe~v~~G~~~~-----~~~~liTVFSa~nY~~~~~N-~gavl~i~~~-~~~~~~~~~~ 699 (744)
.+.+.+.+.++++ ++++++-||.-. .+.... .++.+..+++........+| .=.++.++.+ .+|..+.+.|
T Consensus 135 ~~~~~~~~ll~~~~~V~~v~~GH~H~-~~~~~~~~~~~~g~~v~~~~~~~q~~~~~g~~~~r~~~f~~~~~~i~~~tysp 213 (214)
T cd07399 135 DGQQIWDKLVKKNDNVFMVLSGHVHG-AGRTTLVSVGDAGRTVHQMLADYQGEPNGGNGFLRLLEFDPDNNKIDVRTYSP 213 (214)
T ss_pred cHHHHHHHHHhCCCCEEEEEccccCC-CceEEEcccCCCCCEeeEEeecccCCCCCCcceEEEEEEecCCCEEEEEeCCC
Confidence 4556788889988 799999999654 333332 13345555443322111222 1245555665 4777777655
No 93
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=97.42 E-value=0.00028 Score=55.21 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=29.1
Q ss_pred CCCccceeEEEEecCCCCceEEEEcCCCCCCCCceeEEEEE
Q 004569 48 WFLQPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFV 88 (744)
Q Consensus 48 ~~~~~l~D~~~l~~~~~~~W~w~~~~g~~P~pR~~Hsaa~~ 88 (744)
.....++|+|.|+.. +++|+.+ +.+|.||++|+++++
T Consensus 13 ~~~~~~nd~~~~~~~-~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 13 DGGTRLNDVWVFDLD-TNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCCCEecCEEEEECC-CCEEEEC---CCCCCCccceEEEEC
Confidence 467889999999885 4455544 578999999999874
No 94
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.40 E-value=0.0013 Score=69.19 Aligned_cols=142 Identities=20% Similarity=0.230 Sum_probs=87.3
Q ss_pred eeEEeeeeecee--ccCCC-Ccceeeeecc--CCE-EEEEEeccCCCCccceeEEEEecCCCCceE-------EEEcCCC
Q 004569 9 NFKLSSVKIAEI--FVPHL-CSVYCCNACA--IDV-IFCCLFWLLWFLQPLASAYGLAKHRDGRWE-------WAIAPGV 75 (744)
Q Consensus 9 ~~~~~~~~~~~~--~~p~~-~~~~~~~~~~--~~~-ifgg~gg~~~~~~~l~D~~~l~~~~~~~W~-------w~~~~g~ 75 (744)
++||..+..+.. -.|+. |+..|..... .+. .|...||+..+..-...+|.+.....+-.+ ..+..|.
T Consensus 4 elkLrp~sFsndSCYLPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGd 83 (337)
T PF03089_consen 4 ELKLRPISFSNDSCYLPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGD 83 (337)
T ss_pred cceecceeecCCcccCCCCCCccEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCC
Confidence 566666665544 33443 4444444222 222 566678888888877889988766544112 2222389
Q ss_pred CCCCCceeEEEEECCE----EEEEeccCCC---C-------CccCCCceEEEEECCCCcEEe--CCCCCCCCCCCCCCcc
Q 004569 76 SPSPRYQHAAVFVNAR----LHVSGGALGG---G-------RMVEDSSSVAVLDTAAGVWCD--TKSVVTSPRTGRYSAD 139 (744)
Q Consensus 76 ~P~pR~~Hsaa~~g~~----LyV~GG~~~~---~-------~~~~~~~sv~~yD~~t~~W~~--~~~~~~~~R~g~~~~~ 139 (744)
.|.+||+|++-++..+ .++|||+.-. . ..++-...|+..|.+-+.+.. ++.. ..
T Consensus 84 vP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl-~d--------- 153 (337)
T PF03089_consen 84 VPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPEL-QD--------- 153 (337)
T ss_pred CCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhh-cC---------
Confidence 9999999998877432 6789997421 1 112222347778887776652 1111 11
Q ss_pred cCCCCccccccccccEEEEEECCeEEEEcccc
Q 004569 140 AAGGDAAVELTRRCRHAAAAVGDLIFIYGGLR 171 (744)
Q Consensus 140 ~~~~d~~~~~~~R~~Hsa~v~~~~IYV~GG~~ 171 (744)
+-..|-+.+-++.+|+.||..
T Consensus 154 -----------G~SFHvslar~D~VYilGGHs 174 (337)
T PF03089_consen 154 -----------GQSFHVSLARNDCVYILGGHS 174 (337)
T ss_pred -----------CeEEEEEEecCceEEEEccEE
Confidence 355699999999999999964
No 95
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.37 E-value=3.5e-05 Score=86.08 Aligned_cols=243 Identities=12% Similarity=0.024 Sum_probs=158.3
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCCeeeecC----ceEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCC
Q 004569 416 FLDCNEIADLCDSAERIFSSEPSVLQLKA----PIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQ 491 (744)
Q Consensus 416 ~l~~~~i~~L~~~a~~il~~ep~ll~l~~----pi~VvGDIHG~~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~ 491 (744)
.|...++..+++.+.+++..+|+...+.. -.+.++|.||.+.|+..+++.- |.-. .-|++-|++|+++.
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~-----K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYI-----KAYVRRGTAVMALG 86 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhh-----heeeeccHHHHhHH
Confidence 46678888999999999999998877742 3789999999999999998863 2211 15999999999999
Q ss_pred ChHHHHHHHHHhhhhCCCCeEEEecCccccchhhhcCChHHHHHHhCcccchhhhhhhhhHhhccceeeEEeCcEEEecC
Q 004569 492 HSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHG 571 (744)
Q Consensus 492 ~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~l~~~~gf~~E~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHG 571 (744)
...+.+..|...+...|+...+.|++||+..+-..++|..+....++.. +.-++..+...+.. |+.....+.++=-|
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~~d~-~s~~~~~~~~~~~~-~i~~~y~g~~le~~- 163 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPEGDK-KSVVEMKIDEEDMD-LIESDYSGPVLEDH- 163 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCccCC-cccccccccccccc-ccccccCCcccccc-
Confidence 9999999999999999999999999999999988889988776666543 22233323222222 14444433332222
Q ss_pred CCCCC--------------C-----CC-hhhhh----hccCCccccCCcceeeeccccCCCCCCCCCCcccCCCCCCcee
Q 004569 572 GIGRS--------------I-----NH-VEQIE----NLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVT 627 (744)
Q Consensus 572 Gi~~~--------------~-----~~-l~~I~----~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~ 627 (744)
-+... + .+ +++.. .+..++++ ..-.|..|+++... ...+-...++-+ ..
T Consensus 164 kvt~e~vk~~~~~~~~~~~L~~k~a~~i~~~~~~~~~~l~~~ve~----~~~~d~~~sv~gd~--hGqfydl~nif~-l~ 236 (476)
T KOG0376|consen 164 KVTLEFVKTLMEVFKNQKKLPKKYAYSILDLAKTILRKLPSLVEI----SVPGDVKISVCGDT--HGQFYDLLNIFE-LN 236 (476)
T ss_pred hhhHHHHHHHHHhhhcccccccccceeeHHHHhhHHhcCCcceEe----ecCCCceEEecCCc--cccccchhhhHh-hc
Confidence 11000 0 00 01111 11112211 13456788888642 122223345544 34
Q ss_pred eCHHHHHHHHHHcCCeEEEEcccccc-----------cc-eEEec---CCeEEEEeccCCCCC
Q 004569 628 FGPDRVMEFCNNNDLQLIVRAHECVM-----------DG-FERFA---QGHLITLFSATNYCG 675 (744)
Q Consensus 628 Fg~~~v~~fL~~n~l~~IIRgHe~v~-----------~G-~~~~~---~~~liTVFSa~nY~~ 675 (744)
.+++....||.+.++.-+++.|.-+. ++ |.... .+.++++|+++.+|-
T Consensus 237 g~Ps~t~~ylfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~ 299 (476)
T KOG0376|consen 237 GLPSETNPYLFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVK 299 (476)
T ss_pred CCCCCcccccccCceeeecccceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchh
Confidence 56777788888888888888876442 22 22111 235899999999874
No 96
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=97.27 E-value=0.012 Score=58.63 Aligned_cols=64 Identities=17% Similarity=0.271 Sum_probs=44.0
Q ss_pred CceEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCcccc
Q 004569 444 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAA 521 (744)
Q Consensus 444 ~pi~VvGDIHG~~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~ 521 (744)
+.|.|++|.||...+..+..+.......+ -++.+||++...... .|......+++.++||.|..
T Consensus 2 m~ilviSDtH~~~~~~~~~~~~~~~~~~d------~vih~GD~~~~~~~~--------~l~~~~~~~i~~V~GN~D~~ 65 (172)
T COG0622 2 MKILVISDTHGPLRAIEKALKIFNLEKVD------AVIHAGDSTSPFTLD--------ALEGGLAAKLIAVRGNCDGE 65 (172)
T ss_pred cEEEEEeccCCChhhhhHHHHHhhhcCCC------EEEECCCcCCccchH--------HhhcccccceEEEEccCCCc
Confidence 57899999999997555555554444444 688899999865421 11110236899999999974
No 97
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.21 E-value=0.001 Score=66.08 Aligned_cols=43 Identities=26% Similarity=0.271 Sum_probs=27.3
Q ss_pred eEEeeccccCCCCCh--HHHHHHHHHhhhhCCCCeEEEecCcccc
Q 004569 479 DYLFLGDYVDRGQHS--LETITLLLALKVEYPNNVHLIRGNHEAA 521 (744)
Q Consensus 479 ~~vFLGDyVDRG~~s--lEvl~lL~~LK~~~P~~v~lLRGNHE~~ 521 (744)
.+|++||++|..... .+...+-+......+..+++++||||..
T Consensus 44 ~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 44 RLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVILIRGNHDGG 88 (172)
T ss_pred EEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEEEcccCccc
Confidence 799999999865432 2222211111223456899999999974
No 98
>PLN02772 guanylate kinase
Probab=97.18 E-value=0.0015 Score=72.80 Aligned_cols=88 Identities=16% Similarity=0.016 Sum_probs=60.5
Q ss_pred ccCCCCcceeeeeccCCEEEEEEeccCCCCccceeEEEEecCCCCceEEEEcC--CCCCCCCceeEEEEE-CCEEEEEec
Q 004569 21 FVPHLCSVYCCNACAIDVIFCCLFWLLWFLQPLASAYGLAKHRDGRWEWAIAP--GVSPSPRYQHAAVFV-NARLHVSGG 97 (744)
Q Consensus 21 ~~p~~~~~~~~~~~~~~~ifgg~gg~~~~~~~l~D~~~l~~~~~~~W~w~~~~--g~~P~pR~~Hsaa~~-g~~LyV~GG 97 (744)
+.++++.++.+... .+.+|+. ||+...+...+++|.|+.. +|+|.... |..|.||.+|+++++ +++|+|+++
T Consensus 20 ~~~~~~~~~tav~i-gdk~yv~-GG~~d~~~~~~~v~i~D~~---t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~ 94 (398)
T PLN02772 20 FGVKPKNRETSVTI-GDKTYVI-GGNHEGNTLSIGVQILDKI---TNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKK 94 (398)
T ss_pred ccCCCCCcceeEEE-CCEEEEE-cccCCCccccceEEEEECC---CCcEecccccCCCCCCCCcceEEEECCceEEEEeC
Confidence 34556655555544 4556664 3344444467899998875 56676665 999999999999999 589999997
Q ss_pred cCCCCCccCCCceEEEEECCCC
Q 004569 98 ALGGGRMVEDSSSVAVLDTAAG 119 (744)
Q Consensus 98 ~~~~~~~~~~~~sv~~yD~~t~ 119 (744)
... .+ .++|.+...|-
T Consensus 95 ~~~----~~--~~~w~l~~~t~ 110 (398)
T PLN02772 95 GSA----PD--DSIWFLEVDTP 110 (398)
T ss_pred CCC----Cc--cceEEEEcCCH
Confidence 543 22 34898877663
No 99
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=97.13 E-value=0.001 Score=69.51 Aligned_cols=68 Identities=26% Similarity=0.215 Sum_probs=46.7
Q ss_pred ceEEEecCCCCH------HHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCc
Q 004569 445 PIKIFGDLHGQF------GDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNH 518 (744)
Q Consensus 445 pi~VvGDIHG~~------~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNH 518 (744)
+|.+++|+|+.+ ..|.++++.+.-...+ -+|+.||++++.+.+.+++..|..+ .+..++++.|||
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d------~vv~~GDl~~~~~~~~~~~~~l~~~---~~~pv~~v~GNH 71 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKID------HLHIAGDISNDFQRSLPFIEKLQEL---KGIKVTFNAGNH 71 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCC------EEEECCccccchhhHHHHHHHHHHh---cCCcEEEECCCC
Confidence 478999999653 2245566655322232 6899999999876666666555543 345799999999
Q ss_pred ccc
Q 004569 519 EAA 521 (744)
Q Consensus 519 E~~ 521 (744)
|..
T Consensus 72 D~~ 74 (239)
T TIGR03729 72 DML 74 (239)
T ss_pred CCC
Confidence 964
No 100
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=97.03 E-value=0.04 Score=58.13 Aligned_cols=28 Identities=7% Similarity=0.100 Sum_probs=22.4
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccceE
Q 004569 630 PDRVMEFCNNNDLQLIVRAHECVMDGFE 657 (744)
Q Consensus 630 ~~~v~~fL~~n~l~~IIRgHe~v~~G~~ 657 (744)
...+.+.|++.++++++-||.-......
T Consensus 195 ~~~l~~ll~~~~V~~v~~GH~H~~~~~~ 222 (262)
T cd07395 195 RKPLLDKFKKAGVKAVFSGHYHRNAGGR 222 (262)
T ss_pred HHHHHHHHHhcCceEEEECccccCCceE
Confidence 3567778899999999999998765543
No 101
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=97.02 E-value=0.0021 Score=63.63 Aligned_cols=39 Identities=36% Similarity=0.572 Sum_probs=29.7
Q ss_pred eEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccccc
Q 004569 479 DYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAAD 522 (744)
Q Consensus 479 ~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~ 522 (744)
.++++||++++|..+.. +.++..+ +..+++++||||...
T Consensus 45 ~vi~~GDl~~~~~~~~~-~~~l~~~----~~~~~~v~GNHD~~~ 83 (168)
T cd07390 45 TVYHLGDFSFGGKAGTE-LELLSRL----NGRKHLIKGNHDSSL 83 (168)
T ss_pred EEEEeCCCCCCCChHHH-HHHHHhC----CCCeEEEeCCCCchh
Confidence 79999999999987644 4444443 357999999999754
No 102
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=96.93 E-value=0.0016 Score=66.23 Aligned_cols=73 Identities=22% Similarity=0.243 Sum_probs=46.2
Q ss_pred ceEEEecCC-CCH--------------HHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChHHHHHHHHHhhhhC--
Q 004569 445 PIKIFGDLH-GQF--------------GDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEY-- 507 (744)
Q Consensus 445 pi~VvGDIH-G~~--------------~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~-- 507 (744)
+|+.++|+| |.. ..|.++++.+.....+ .+|+.||++|....+.+.+..+..+-.+.
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~ 74 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVD------FVLIAGDLFDSNNPSPEALELLIEALRRLKE 74 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCC------EEEECCcccCCCCCCHHHHHHHHHHHHHHHH
Confidence 478999999 322 2355555554332222 69999999998875554443333332222
Q ss_pred -CCCeEEEecCccccch
Q 004569 508 -PNNVHLIRGNHEAADI 523 (744)
Q Consensus 508 -P~~v~lLRGNHE~~~l 523 (744)
...++++.||||....
T Consensus 75 ~~~~v~~~~GNHD~~~~ 91 (223)
T cd00840 75 AGIPVFIIAGNHDSPSR 91 (223)
T ss_pred CCCCEEEecCCCCCccc
Confidence 4579999999997553
No 103
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=96.86 E-value=0.0029 Score=67.30 Aligned_cols=73 Identities=23% Similarity=0.350 Sum_probs=47.2
Q ss_pred ceEEEecCC-CC------------HHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCC-hHHHHHHHHHhhhhCCCC
Q 004569 445 PIKIFGDLH-GQ------------FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQH-SLETITLLLALKVEYPNN 510 (744)
Q Consensus 445 pi~VvGDIH-G~------------~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~-slEvl~lL~~LK~~~P~~ 510 (744)
++.+++|+| +. ...|.++++.+.....+ -+|++||+++.|.. +.+-+..++.+-...+-.
T Consensus 2 r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d------~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p 75 (267)
T cd07396 2 RFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLD------FVVQLGDIIDGDNARAEEALDAVLAILDRLKGP 75 (267)
T ss_pred eEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCC------EEEECCCeecCCCchHHHHHHHHHHHHHhcCCC
Confidence 578999999 21 35566777666432222 68999999998873 223333333332233457
Q ss_pred eEEEecCccccch
Q 004569 511 VHLIRGNHEAADI 523 (744)
Q Consensus 511 v~lLRGNHE~~~l 523 (744)
++.+.||||....
T Consensus 76 ~~~v~GNHD~~~~ 88 (267)
T cd07396 76 VHHVLGNHDLYNP 88 (267)
T ss_pred EEEecCccccccc
Confidence 9999999998543
No 104
>PHA02546 47 endonuclease subunit; Provisional
Probab=96.75 E-value=0.0029 Score=69.80 Aligned_cols=72 Identities=24% Similarity=0.350 Sum_probs=45.4
Q ss_pred CceEEEecCC-C-----------CHHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCC-CChHHHHHHHHH----hhhh
Q 004569 444 APIKIFGDLH-G-----------QFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRG-QHSLETITLLLA----LKVE 506 (744)
Q Consensus 444 ~pi~VvGDIH-G-----------~~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG-~~slEvl~lL~~----LK~~ 506 (744)
++++.++|+| | +...|.++++.+.-...+ -+|+.||++|+. +.+.+++.++.. +-..
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD------~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~ 74 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGIT------TWIQLGDTFDVRKAITQNTMNFVREKIFDLLKE 74 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCC------EEEECCcccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4789999999 4 223445554444322222 689999999985 445555444433 1122
Q ss_pred CCCCeEEEecCcccc
Q 004569 507 YPNNVHLIRGNHEAA 521 (744)
Q Consensus 507 ~P~~v~lLRGNHE~~ 521 (744)
.+-.|++|.||||..
T Consensus 75 ~gi~v~~I~GNHD~~ 89 (340)
T PHA02546 75 AGITLHVLVGNHDMY 89 (340)
T ss_pred CCCeEEEEccCCCcc
Confidence 356799999999974
No 105
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=96.71 E-value=0.0034 Score=66.84 Aligned_cols=70 Identities=20% Similarity=0.328 Sum_probs=44.6
Q ss_pred eEEEecCCCCHHHHHHHHHHhCC---CCCCCCcceeeEEeeccccCCCC-ChHHHHH------HHHHh------hhhCCC
Q 004569 446 IKIFGDLHGQFGDLMRLFDEYGS---PSTAGDIAYIDYLFLGDYVDRGQ-HSLETIT------LLLAL------KVEYPN 509 (744)
Q Consensus 446 i~VvGDIHG~~~dL~~il~~~g~---p~~~~~~~~~~~vFLGDyVDRG~-~slEvl~------lL~~L------K~~~P~ 509 (744)
|+|+||+||++..+.+.++.... ...+ -+|++||+-..+. ..++.+. -+..+ ..+.|-
T Consensus 1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D------~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~ 74 (262)
T cd00844 1 IAVEGCCHGELDKIYETLEKIEKKEGTKVD------LLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPI 74 (262)
T ss_pred CEEEecCCccHHHHHHHHHHHHHhcCCCCc------EEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCe
Confidence 68999999999888775554321 2222 5889999965443 3343331 11111 233566
Q ss_pred CeEEEecCcccc
Q 004569 510 NVHLIRGNHEAA 521 (744)
Q Consensus 510 ~v~lLRGNHE~~ 521 (744)
-+++|-||||..
T Consensus 75 ~t~fi~GNHE~~ 86 (262)
T cd00844 75 LTIFIGGNHEAS 86 (262)
T ss_pred eEEEECCCCCCH
Confidence 789999999974
No 106
>PRK04036 DNA polymerase II small subunit; Validated
Probab=96.63 E-value=0.0062 Score=70.73 Aligned_cols=78 Identities=21% Similarity=0.262 Sum_probs=44.1
Q ss_pred cCceEEEecCC-CCH----HHHHHHHHHh-CCCCCCC--CcceeeEEeeccccCC-CCCh---------------HHHHH
Q 004569 443 KAPIKIFGDLH-GQF----GDLMRLFDEY-GSPSTAG--DIAYIDYLFLGDYVDR-GQHS---------------LETIT 498 (744)
Q Consensus 443 ~~pi~VvGDIH-G~~----~dL~~il~~~-g~p~~~~--~~~~~~~vFLGDyVDR-G~~s---------------lEvl~ 498 (744)
+..+++++|+| |.. ..+..+++.+ |..+... ...-..+|++||+||. |.+. -++..
T Consensus 243 ~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~~ 322 (504)
T PRK04036 243 KVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAAE 322 (504)
T ss_pred ccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHHH
Confidence 35699999999 652 2234444433 2221100 0001279999999994 3211 13444
Q ss_pred HHHHhhhhCCCCeEEEecCccccc
Q 004569 499 LLLALKVEYPNNVHLIRGNHEAAD 522 (744)
Q Consensus 499 lL~~LK~~~P~~v~lLRGNHE~~~ 522 (744)
+|..+.. .-.|++++||||...
T Consensus 323 ~L~~L~~--~i~V~~ipGNHD~~~ 344 (504)
T PRK04036 323 YLKQIPE--DIKIIISPGNHDAVR 344 (504)
T ss_pred HHHhhhc--CCeEEEecCCCcchh
Confidence 5555432 246999999999754
No 107
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=96.62 E-value=0.065 Score=56.55 Aligned_cols=73 Identities=27% Similarity=0.313 Sum_probs=50.2
Q ss_pred ceEEEecCCCC------HHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChHHHHHHHHHhh--hhCCCCeEEEec
Q 004569 445 PIKIFGDLHGQ------FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALK--VEYPNNVHLIRG 516 (744)
Q Consensus 445 pi~VvGDIHG~------~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK--~~~P~~v~lLRG 516 (744)
.++.|+|+|-- ...+..+++.......+ -+|+.||+.+.|. .+-+..+..+- ...|..+++++|
T Consensus 2 ~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D------~~v~tGDl~~~~~--~~~~~~~~~~l~~~~~~~~~~~vpG 73 (301)
T COG1409 2 RIAHISDLHLGALGVDSEELLEALLAAIEQLKPD------LLVVTGDLTNDGE--PEEYRRLKELLARLELPAPVIVVPG 73 (301)
T ss_pred eEEEEecCcccccccchHHHHHHHHHHHhcCCCC------EEEEccCcCCCCC--HHHHHHHHHHHhhccCCCceEeeCC
Confidence 57899999976 34556666766644434 6999999999963 22333333332 367788999999
Q ss_pred Cccccchhh
Q 004569 517 NHEAADINA 525 (744)
Q Consensus 517 NHE~~~l~~ 525 (744)
|||....+.
T Consensus 74 NHD~~~~~~ 82 (301)
T COG1409 74 NHDARVVNG 82 (301)
T ss_pred CCcCCchHH
Confidence 999876543
No 108
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=96.61 E-value=0.0062 Score=63.02 Aligned_cols=69 Identities=26% Similarity=0.328 Sum_probs=44.0
Q ss_pred ceEEEecCCCC------------HHHHHHHHHHhCCC--CCCCCcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCC
Q 004569 445 PIKIFGDLHGQ------------FGDLMRLFDEYGSP--STAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNN 510 (744)
Q Consensus 445 pi~VvGDIHG~------------~~dL~~il~~~g~p--~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~ 510 (744)
++.+++|+|=. ...|.++++.+... ..+ -+|++||+++.|.. +....+..+..+.+..
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d------~vi~~GDl~~~~~~--~~~~~~~~~l~~~~~p 72 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPD------LVLVTGDLTDDGSP--ESYERLRELLAALPIP 72 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCC------EEEECccCCCCCCH--HHHHHHHHHHhhcCCC
Confidence 47899999943 34567777665432 222 58999999998753 2222222222223457
Q ss_pred eEEEecCcccc
Q 004569 511 VHLIRGNHEAA 521 (744)
Q Consensus 511 v~lLRGNHE~~ 521 (744)
++.++||||..
T Consensus 73 ~~~v~GNHD~~ 83 (240)
T cd07402 73 VYLLPGNHDDR 83 (240)
T ss_pred EEEeCCCCCCH
Confidence 99999999974
No 109
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.54 E-value=0.005 Score=65.16 Aligned_cols=72 Identities=25% Similarity=0.295 Sum_probs=46.4
Q ss_pred CceEEEecCC-CC-----------HHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChHHHH----HHHHHhhhhC
Q 004569 444 APIKIFGDLH-GQ-----------FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETI----TLLLALKVEY 507 (744)
Q Consensus 444 ~pi~VvGDIH-G~-----------~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~slEvl----~lL~~LK~~~ 507 (744)
++++.++|+| |. +..|.++++.+.-...+ -+|+.||++|+..-+.+.. .+|..|+...
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D------~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~ 74 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQID------ALLVAGDVFDTANPPAEAQELFNAFFRNLSDAN 74 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCC------EEEECCccCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 4689999999 32 22344454443222222 6899999999986655443 3444554443
Q ss_pred CCCeEEEecCcccc
Q 004569 508 PNNVHLIRGNHEAA 521 (744)
Q Consensus 508 P~~v~lLRGNHE~~ 521 (744)
|-.++++.||||..
T Consensus 75 ~i~v~~i~GNHD~~ 88 (253)
T TIGR00619 75 PIPIVVISGNHDSA 88 (253)
T ss_pred CceEEEEccCCCCh
Confidence 45799999999974
No 110
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=96.51 E-value=0.0048 Score=62.83 Aligned_cols=27 Identities=7% Similarity=0.080 Sum_probs=21.7
Q ss_pred eCHHHHHHHHHHcCCeEEEEccccccc
Q 004569 628 FGPDRVMEFCNNNDLQLIVRAHECVMD 654 (744)
Q Consensus 628 Fg~~~v~~fL~~n~l~~IIRgHe~v~~ 654 (744)
..+..+.+.++..+.+.+|-||.-...
T Consensus 176 ~~~~~~~~~~~~~~~~~~i~GH~H~~~ 202 (217)
T cd07398 176 VFEEAVARLARRKGVDGVICGHTHRPA 202 (217)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCC
Confidence 355667788899999999999987643
No 111
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=96.31 E-value=0.0077 Score=68.10 Aligned_cols=72 Identities=22% Similarity=0.354 Sum_probs=44.4
Q ss_pred CceEEEecCC-CC-H------HH----HHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChHHHH----HHHHHhhhhC
Q 004569 444 APIKIFGDLH-GQ-F------GD----LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETI----TLLLALKVEY 507 (744)
Q Consensus 444 ~pi~VvGDIH-G~-~------~d----L~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~slEvl----~lL~~LK~~~ 507 (744)
++++.++|+| |. + .+ |.++.+.+.-...+ -+|+.||++|++..+.+.. .++..|+. .
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D------~viIaGDifD~~~p~~~a~~~~~~~l~~L~~-~ 73 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVD------AIIVAGDIFDTGSPPSYARELYNRFVVNLQQ-T 73 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCC------EEEECCccccCCCCcHHHHHHHHHHHHHHHh-c
Confidence 4689999999 42 1 11 22333333222222 6899999999986554433 33444442 2
Q ss_pred CCCeEEEecCccccc
Q 004569 508 PNNVHLIRGNHEAAD 522 (744)
Q Consensus 508 P~~v~lLRGNHE~~~ 522 (744)
+-.|+++.||||...
T Consensus 74 ~~~v~~I~GNHD~~~ 88 (407)
T PRK10966 74 GCQLVVLAGNHDSVA 88 (407)
T ss_pred CCcEEEEcCCCCChh
Confidence 356999999999753
No 112
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=96.23 E-value=0.011 Score=63.11 Aligned_cols=70 Identities=13% Similarity=0.102 Sum_probs=46.3
Q ss_pred CceEEEecCC-C-----------CHHHHHHHHHHhCC-C-CCCCCcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCC
Q 004569 444 APIKIFGDLH-G-----------QFGDLMRLFDEYGS-P-STAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPN 509 (744)
Q Consensus 444 ~pi~VvGDIH-G-----------~~~dL~~il~~~g~-p-~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~ 509 (744)
.+++.++|+| . ....|.++++.+.. . ..+ -+|+.||+++.|. .+-+..++..-.+.+.
T Consensus 15 ~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D------~vvitGDl~~~~~--~~~~~~~~~~l~~l~~ 86 (275)
T PRK11148 15 VRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFD------LIVATGDLAQDHS--SEAYQHFAEGIAPLRK 86 (275)
T ss_pred EEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCC------EEEECCCCCCCCC--HHHHHHHHHHHhhcCC
Confidence 5689999999 1 14567777776532 1 222 5889999999874 3333333333333456
Q ss_pred CeEEEecCcccc
Q 004569 510 NVHLIRGNHEAA 521 (744)
Q Consensus 510 ~v~lLRGNHE~~ 521 (744)
.++++.||||..
T Consensus 87 Pv~~v~GNHD~~ 98 (275)
T PRK11148 87 PCVWLPGNHDFQ 98 (275)
T ss_pred cEEEeCCCCCCh
Confidence 799999999973
No 113
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=96.20 E-value=0.0067 Score=59.45 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=27.6
Q ss_pred eEEeeccccCCCCCh--H---HHHHHHHHhhhhC-CCCeEEEecCcccc
Q 004569 479 DYLFLGDYVDRGQHS--L---ETITLLLALKVEY-PNNVHLIRGNHEAA 521 (744)
Q Consensus 479 ~~vFLGDyVDRG~~s--l---Evl~lL~~LK~~~-P~~v~lLRGNHE~~ 521 (744)
.+||+||++|.+... . +.+..+.++.... +..++++.||||..
T Consensus 41 ~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~ 89 (156)
T cd08165 41 VVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIG 89 (156)
T ss_pred EEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcC
Confidence 699999999987642 1 2222233322222 34699999999974
No 114
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=96.19 E-value=0.013 Score=60.96 Aligned_cols=69 Identities=20% Similarity=0.208 Sum_probs=41.8
Q ss_pred CceEEEecCC-CCHHH----------------HHHHHHHhCCCCCCCCcceeeEEeeccccCCCCCh---HHHHHHHHHh
Q 004569 444 APIKIFGDLH-GQFGD----------------LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS---LETITLLLAL 503 (744)
Q Consensus 444 ~pi~VvGDIH-G~~~d----------------L~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~s---lEvl~lL~~L 503 (744)
..+.||+|+| |.-.. |.++.+.......+ .+|++||+++..... -++..++..+
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d------~vIi~GDl~h~~~~~~~~~~~~~~l~~~ 88 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIE------ALIINGDLKHEFKKGLEWRFIREFIEVT 88 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCC------EEEEcCccccccCChHHHHHHHHHHHhc
Confidence 5689999999 53222 22233322222222 799999999765542 2333344333
Q ss_pred hhhCCCCeEEEecCccccc
Q 004569 504 KVEYPNNVHLIRGNHEAAD 522 (744)
Q Consensus 504 K~~~P~~v~lLRGNHE~~~ 522 (744)
. ..+++++||||...
T Consensus 89 ~----~~v~~V~GNHD~~~ 103 (225)
T TIGR00024 89 F----RDLILIRGNHDALI 103 (225)
T ss_pred C----CcEEEECCCCCCcc
Confidence 2 47999999999743
No 115
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=96.08 E-value=0.018 Score=58.22 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=29.9
Q ss_pred eEEeeccccCCCCC---hHHHHHHHHHhhhhCCCCeEEEecCcc
Q 004569 479 DYLFLGDYVDRGQH---SLETITLLLALKVEYPNNVHLIRGNHE 519 (744)
Q Consensus 479 ~~vFLGDyVDRG~~---slEvl~lL~~LK~~~P~~v~lLRGNHE 519 (744)
.+|++||+++.+.. +.+.+..++.......-.++++.||||
T Consensus 44 ~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD 87 (199)
T cd07383 44 LVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAATFGNHD 87 (199)
T ss_pred EEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEEECccCC
Confidence 69999999997765 355555555443334457899999999
No 116
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=96.02 E-value=0.032 Score=59.64 Aligned_cols=37 Identities=8% Similarity=0.151 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHcCCeEEEEcccccccceEEecCCeEE
Q 004569 629 GPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLI 665 (744)
Q Consensus 629 g~~~v~~fL~~n~l~~IIRgHe~v~~G~~~~~~~~li 665 (744)
....+.+.|++.++++++-||.-...-+....+++++
T Consensus 181 ~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~ 217 (294)
T cd00839 181 MRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVV 217 (294)
T ss_pred HHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEec
Confidence 3456778899999999999999764433333455543
No 117
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=96.00 E-value=0.016 Score=60.37 Aligned_cols=45 Identities=9% Similarity=-0.014 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHcCCeEEEEcccccccceE---EecCCeEEEEeccCCCCC
Q 004569 629 GPDRVMEFCNNNDLQLIVRAHECVMDGFE---RFAQGHLITLFSATNYCG 675 (744)
Q Consensus 629 g~~~v~~fL~~n~l~~IIRgHe~v~~G~~---~~~~~~liTVFSa~nY~~ 675 (744)
+...+.+.+++.++++++-||.-...-.. ...+| |+.+++|.=|-
T Consensus 181 ~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~g--i~~~~~~~~~~ 228 (232)
T cd07393 181 DDSPISKLIEEYGVDICVYGHLHGVGRDRAINGERGG--IRYQLVSADYL 228 (232)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCCcccccccceECC--EEEEEEcchhc
Confidence 45677888999999999999986432211 12344 56777776553
No 118
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=95.94 E-value=0.23 Score=52.83 Aligned_cols=36 Identities=11% Similarity=0.089 Sum_probs=26.4
Q ss_pred cccCCCCCCc--e-eeCHHHHHHHHHHcCCeEEEEcccc
Q 004569 616 LRPNARGPGL--V-TFGPDRVMEFCNNNDLQLIVRAHEC 651 (744)
Q Consensus 616 ~~~n~Rg~g~--~-~Fg~~~v~~fL~~n~l~~IIRgHe~ 651 (744)
+.+.+.+.|. - .-.++..++.|+..+-.+|.-||+-
T Consensus 188 ~~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH 226 (257)
T cd08163 188 KTPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDH 226 (257)
T ss_pred CCCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCC
Confidence 3444445441 1 3488999999999999999999984
No 119
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=95.94 E-value=0.027 Score=58.99 Aligned_cols=72 Identities=21% Similarity=0.273 Sum_probs=39.0
Q ss_pred EEEecCC--CCH---HHHHHHHHHh-CCCCCCCCcceeeEEeeccccCCCC-----C-------h----HHHHHHHHHhh
Q 004569 447 KIFGDLH--GQF---GDLMRLFDEY-GSPSTAGDIAYIDYLFLGDYVDRGQ-----H-------S----LETITLLLALK 504 (744)
Q Consensus 447 ~VvGDIH--G~~---~dL~~il~~~-g~p~~~~~~~~~~~vFLGDyVDRG~-----~-------s----lEvl~lL~~LK 504 (744)
++++|+| +.. ..+..+++.+ +..+... ....+|++||++|+.. . . .++..+|..|.
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~--~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 79 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSAS--RVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVP 79 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCccccc--CccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcc
Confidence 6899999 432 2223333332 2211000 0117999999999731 0 1 12333444443
Q ss_pred hhCCCCeEEEecCccccc
Q 004569 505 VEYPNNVHLIRGNHEAAD 522 (744)
Q Consensus 505 ~~~P~~v~lLRGNHE~~~ 522 (744)
. .-.|+++.||||...
T Consensus 80 ~--~~~v~~ipGNHD~~~ 95 (243)
T cd07386 80 S--HIKIIIIPGNHDAVR 95 (243)
T ss_pred c--CCeEEEeCCCCCccc
Confidence 2 357999999999743
No 120
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.86 E-value=0.031 Score=60.81 Aligned_cols=139 Identities=14% Similarity=0.086 Sum_probs=83.3
Q ss_pred cCCCCcceeeeeccCCE--EEEEEeccCC-CCccceeEEEEecCCCCceEEEEcCCCCCCCCceeEEEEECC-EEEEEec
Q 004569 22 VPHLCSVYCCNACAIDV--IFCCLFWLLW-FLQPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNA-RLHVSGG 97 (744)
Q Consensus 22 ~p~~~~~~~~~~~~~~~--ifgg~gg~~~-~~~~l~D~~~l~~~~~~~W~w~~~~g~~P~pR~~Hsaa~~g~-~LyV~GG 97 (744)
.|...+--.+.+...+. +|+|.|-..+ ....++|+|.|+... .+|..+.. ..|..-.+|+++.+++ +||++||
T Consensus 78 FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~-nsW~kl~t--~sP~gl~G~~~~~~~~~~i~f~GG 154 (381)
T COG3055 78 FPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPST-NSWHKLDT--RSPTGLVGASTFSLNGTKIYFFGG 154 (381)
T ss_pred CCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCC-Chhheecc--ccccccccceeEecCCceEEEEcc
Confidence 34444333343333444 5665443222 135689999998774 47777665 4677778999999988 8999999
Q ss_pred cCCCC--Ccc----------------------------CCCceEEEEECCCCcEEeCCCCCCCCCCCCCCcccCCCCccc
Q 004569 98 ALGGG--RMV----------------------------EDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAV 147 (744)
Q Consensus 98 ~~~~~--~~~----------------------------~~~~sv~~yD~~t~~W~~~~~~~~~~R~g~~~~~~~~~d~~~ 147 (744)
.+..- ..+ .....++.|||.+++|+.....+..+
T Consensus 155 vn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~---------------- 218 (381)
T COG3055 155 VNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYG---------------- 218 (381)
T ss_pred ccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccC----------------
Confidence 64200 000 00123888999999998766555553
Q ss_pred cccccccEEEEEECCeEEEEccccC-Ccccccccccc
Q 004569 148 ELTRRCRHAAAAVGDLIFIYGGLRG-GVLLDDLLVAE 183 (744)
Q Consensus 148 ~~~~R~~Hsa~v~~~~IYV~GG~~g-~~~l~dv~~~D 183 (744)
+|.++.+.-++++.++-|.-- .-+...+.++|
T Consensus 219 ----~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~ 251 (381)
T COG3055 219 ----NAGSAVVIKGNKLTLINGEIKPGLRTAEVKQAD 251 (381)
T ss_pred ----ccCcceeecCCeEEEEcceecCCccccceeEEE
Confidence 444565556676777766422 12233444554
No 121
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=95.82 E-value=0.96 Score=46.85 Aligned_cols=206 Identities=19% Similarity=0.216 Sum_probs=116.7
Q ss_pred cCceEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEeecccc--CCCCChHHHHH-HHHHhhhhCCCCeEEEecCcc
Q 004569 443 KAPIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYV--DRGQHSLETIT-LLLALKVEYPNNVHLIRGNHE 519 (744)
Q Consensus 443 ~~pi~VvGDIHG~~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyV--DRG~~slEvl~-lL~~LK~~~P~~v~lLRGNHE 519 (744)
.+++..+.|+||.+..+.++++.......+ -+++.||+. +.|+.-.-.-. .+-.++. +--.|+.+.||-|
T Consensus 3 ~mkil~vtDlHg~~~~~~k~~~~~~~~~~D------~lviaGDlt~~~~~~~~~~~~~~~~e~l~~-~~~~v~avpGNcD 75 (226)
T COG2129 3 KMKILAVTDLHGSEDSLKKLLNAAADIRAD------LLVIAGDLTYFHFGPKEVAEELNKLEALKE-LGIPVLAVPGNCD 75 (226)
T ss_pred cceEEEEeccccchHHHHHHHHHHhhccCC------EEEEecceehhhcCchHHHHhhhHHHHHHh-cCCeEEEEcCCCC
Confidence 367899999999999999999887644443 688899999 87764321111 0333332 3368999999988
Q ss_pred ccchhhhcCChHHHHHHhCcccchhhhhhhhhHhhccceeeEEeCcEEEecCCCCCCC------CChhhhhhccCCcccc
Q 004569 520 AADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRSI------NHVEQIENLQRPITME 593 (744)
Q Consensus 520 ~~~l~~~~gf~~E~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHGGi~~~~------~~l~~I~~i~Rp~~~~ 593 (744)
...+-.. ....+. .+.. -...+++--||-=||..+.- .+.++|...-+-.-..
T Consensus 76 ~~~v~~~-------l~~~~~----~v~~----------~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~ 134 (226)
T COG2129 76 PPEVIDV-------LKNAGV----NVHG----------RVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKK 134 (226)
T ss_pred hHHHHHH-------HHhccc----cccc----------ceEEecCcEEEEecccCCCCCCCccccCHHHHHHHHHHHHhc
Confidence 7543221 111211 1111 12234444455557776642 1345555432211111
Q ss_pred CCcceeeeccccCCCCCCCCCCcccCCCCCCceeeCHHHHHHHHHHcCCeEEEEcccccccceEEecCCeEEEEeccCCC
Q 004569 594 AGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNY 673 (744)
Q Consensus 594 ~~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~Fg~~~v~~fL~~n~l~~IIRgHe~v~~G~~~~~~~~liTVFSa~nY 673 (744)
.....--=++-+-|-. ...+ ++-| ...-|..++++++++.+-.+.|.||=-...|++.- |. ||+-.|.-
T Consensus 135 ~~~~~~Il~~HaPP~g-t~~d----~~~g--~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d~i--G~--TivVNPG~ 203 (226)
T COG2129 135 ADNPVNILLTHAPPYG-TLLD----TPSG--YVHVGSKAVRKLIEEFQPLLGLHGHIHESRGIDKI--GN--TIVVNPGP 203 (226)
T ss_pred ccCcceEEEecCCCCC-cccc----CCCC--ccccchHHHHHHHHHhCCceEEEeeeccccccccc--CC--eEEECCCC
Confidence 1010001112222321 1111 2323 23358899999999999999999986666777653 22 67776755
Q ss_pred CCCCCCeEEEEEEcCC
Q 004569 674 CGTANNAGAILVLGRD 689 (744)
Q Consensus 674 ~~~~~N~gavl~i~~~ 689 (744)
.+ .-..|++.+++.
T Consensus 204 ~~--~g~yA~i~l~~~ 217 (226)
T COG2129 204 LG--EGRYALIELEKE 217 (226)
T ss_pred cc--CceEEEEEecCc
Confidence 33 235678877776
No 122
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=95.80 E-value=0.0063 Score=68.25 Aligned_cols=121 Identities=12% Similarity=0.178 Sum_probs=77.6
Q ss_pred cceeEEEEecCCCCceEEEEcC---CCCCCCCceeEEEEECCE--EEEEeccCCCCCccCCCceEEEEECCCCcEEeCCC
Q 004569 52 PLASAYGLAKHRDGRWEWAIAP---GVSPSPRYQHAAVFVNAR--LHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKS 126 (744)
Q Consensus 52 ~l~D~~~l~~~~~~~W~w~~~~---g~~P~pR~~Hsaa~~g~~--LyV~GG~~~~~~~~~~~~sv~~yD~~t~~W~~~~~ 126 (744)
.-.|.|.|+... ..|.-.... ..-|..-+.|.+++.+.+ ||||||+.-... -.....++.||+....|.....
T Consensus 344 ~RsDfW~FDi~~-~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~-e~~f~GLYaf~~~~~~w~~l~e 421 (723)
T KOG2437|consen 344 LRSDFWRFDIDT-NTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCN-EPQFSGLYAFNCQCQTWKLLRE 421 (723)
T ss_pred cccceEEEecCC-ceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCC-CccccceEEEecCCccHHHHHH
Confidence 347999998763 356555432 134788899999999988 999999853211 1112349999999999984322
Q ss_pred CCCCCCCCCCCcccCCCCccccccccccEEEEEE--CCeEEEEccccCCcccccccccccc
Q 004569 127 VVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAV--GDLIFIYGGLRGGVLLDDLLVAEDL 185 (744)
Q Consensus 127 ~~~~~R~g~~~~~~~~~d~~~~~~~R~~Hsa~v~--~~~IYV~GG~~g~~~l~dv~~~D~~ 185 (744)
.... +.+ ..+....|.+|++-.+ +.++|+|||.....-++-..+||-.
T Consensus 422 ~~~~-~~~----------vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~ 471 (723)
T KOG2437|consen 422 DSCN-AGP----------VVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDID 471 (723)
T ss_pred HHhh-cCc----------chhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceec
Confidence 1000 000 0111224777877555 5689999998766667777777643
No 123
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=95.76 E-value=0.00077 Score=73.60 Aligned_cols=209 Identities=9% Similarity=-0.104 Sum_probs=135.3
Q ss_pred eeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccccchhhhcCChHHHHHHhCcccchhhhhhhhhHhhcc
Q 004569 477 YIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWL 556 (744)
Q Consensus 477 ~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~l~~~~gf~~E~~~~~g~~~~~~~~~~~~~~f~~L 556 (744)
+...|+++++++++.+.++.+-+-+..++.|-.+.-..+++|+. .++++.++...-...+...+|...++.+..+
T Consensus 48 ~latVdvdp~s~t~c~vI~r~~~~~~gdelhhsgwn~~ssc~~~-----~~~~R~~LVlp~l~S~riyvid~~~ep~~~~ 122 (476)
T KOG0918|consen 48 YLATVDVDPSSPTYCQVIHRLPMPYLGDELHHSGWNSCSSCHGD-----SSFKRRYLVLPSLNSGRIYVIDVKTEPRKPS 122 (476)
T ss_pred ceeEEecCCCCCcceeeEEEeccCcccchhcccchhhhhhhccC-----cchhhhheeecccccCceEEEEeccCcCccc
Confidence 34789999999999999999999999999988889999999954 4556666655555556778889999999999
Q ss_pred ceeeEEeCcEEEecCCCCCCCCChhhhhhccCCccccCCcceeeeccccCCCCCCCC--CCcccCCCCCCceeeCHH--H
Q 004569 557 PLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSV--EGLRPNARGPGLVTFGPD--R 632 (744)
Q Consensus 557 Plaa~i~~~il~vHGGi~~~~~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~--~g~~~n~Rg~g~~~Fg~~--~ 632 (744)
+..++.. +++|.||+..|+..+...+..+ ++..-.+..-..+. |-++.+.+.. ..|. .++.. ..||.+ .
T Consensus 123 l~k~i~~-~il~~~~l~~Pht~hcla~g~v--~vs~lGd~~gn~kg-~f~llD~~~~~k~tw~--~~~~~-p~~gyDfwy 195 (476)
T KOG0918|consen 123 LEKTIDP-DILEKTGLACPHTSHCLASGNV--MVSCLGDAEGNAKG-GFLLLDSDFNEKGTWE--KPGHS-PLFGYDFWY 195 (476)
T ss_pred eeeeech-hhHhhcCCcCCcccccccCCCe--eEEeecccccCCcC-CeEEecCccceecccc--cCCCc-cccccceee
Confidence 9988865 9999999999987665555432 22110000011111 3333322110 0111 11111 122222 2
Q ss_pred HHHHHHHcCCeEEEEcccccccceEEecCCeEEEEeccCCCCCCCCCeEEEEEEcCC--ceEEEEEecC
Q 004569 633 VMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRD--LVVVPKLIHP 699 (744)
Q Consensus 633 v~~fL~~n~l~~IIRgHe~v~~G~~~~~~~~liTVFSa~nY~~~~~N~gavl~i~~~--~~~~~~~~~~ 699 (744)
.-.++.....+...+.|.-.-.++..+.++ .+.++.+-|.-...|.++.+-++.+ +.+..+.+|.
T Consensus 196 qpr~~~mIstewgap~~~~~gf~~~~v~d~--lyg~~lhvy~w~~~~~~QtidL~~~gllpleiRfLh~ 262 (476)
T KOG0918|consen 196 QPRHNVMISTEWGAPNALRKGFNPADVEDG--LYGSHLHVYQWSPGELKQTIDLGDTGLLPLEIRFLHN 262 (476)
T ss_pred ccccceEEeecccCchhhhcCCChhHhhcc--ceeeeeEEEecCCccceeEEecCCCCcceEEeeeccC
Confidence 223555566677777877544444455666 8889999998888888888888775 2334444554
No 124
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=95.63 E-value=0.03 Score=63.19 Aligned_cols=73 Identities=18% Similarity=0.167 Sum_probs=53.4
Q ss_pred CceEEEecCCCC------------HHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChHHHHHHHHHhhhh-----
Q 004569 444 APIKIFGDLHGQ------------FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVE----- 506 (744)
Q Consensus 444 ~pi~VvGDIHG~------------~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~----- 506 (744)
++|.+++|+|-- +..|.++++.+.-...+ -+|+.||++|+..-|.+++..++.+-.+
T Consensus 4 mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD------~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~ 77 (405)
T TIGR00583 4 IRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVD------MILLGGDLFHENKPSRKSLYQVLRSLRLYCLGD 77 (405)
T ss_pred eEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCC------EEEECCccCCCCCCCHHHHHHHHHHHHHhhccC
Confidence 578999999932 45677777776433333 6899999999999998888655444332
Q ss_pred -------------------------------CCCCeEEEecCccccc
Q 004569 507 -------------------------------YPNNVHLIRGNHEAAD 522 (744)
Q Consensus 507 -------------------------------~P~~v~lLRGNHE~~~ 522 (744)
..--||+|-||||...
T Consensus 78 ~p~~~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~ 124 (405)
T TIGR00583 78 KPCELEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPS 124 (405)
T ss_pred CccchhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCcc
Confidence 1347999999999964
No 125
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=95.58 E-value=0.041 Score=54.75 Aligned_cols=43 Identities=30% Similarity=0.392 Sum_probs=28.1
Q ss_pred eEEeeccccCCCCCh--HHHHHHHHHhhhhC--------CCCeEEEecCcccc
Q 004569 479 DYLFLGDYVDRGQHS--LETITLLLALKVEY--------PNNVHLIRGNHEAA 521 (744)
Q Consensus 479 ~~vFLGDyVDRG~~s--lEvl~lL~~LK~~~--------P~~v~lLRGNHE~~ 521 (744)
.+||+||++|.+... .+....+..++..+ +..+++|.||||..
T Consensus 48 ~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g 100 (171)
T cd07384 48 VVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIG 100 (171)
T ss_pred EEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccC
Confidence 699999999988743 22222332222211 35699999999984
No 126
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=95.26 E-value=0.04 Score=58.32 Aligned_cols=28 Identities=11% Similarity=0.215 Sum_probs=22.6
Q ss_pred HHHHHHHcCCeEEEEcccccccceEEec
Q 004569 633 VMEFCNNNDLQLIVRAHECVMDGFERFA 660 (744)
Q Consensus 633 v~~fL~~n~l~~IIRgHe~v~~G~~~~~ 660 (744)
+.+.|++.++++++-||.=...+.+..+
T Consensus 190 ~~~ll~~~~v~~vl~GH~H~~~~~~p~h 217 (256)
T cd07401 190 FKDLLKKYNVTAYLCGHLHPLGGLEPVH 217 (256)
T ss_pred HHHHHHhcCCcEEEeCCccCCCcceeee
Confidence 7788999999999999998766645443
No 127
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=95.05 E-value=0.043 Score=55.84 Aligned_cols=43 Identities=19% Similarity=0.364 Sum_probs=32.7
Q ss_pred eEEeeccccCCCCCh--HHHHHHHHHhhhhCC----CCeEEEecCcccc
Q 004569 479 DYLFLGDYVDRGQHS--LETITLLLALKVEYP----NNVHLIRGNHEAA 521 (744)
Q Consensus 479 ~~vFLGDyVDRG~~s--lEvl~lL~~LK~~~P----~~v~lLRGNHE~~ 521 (744)
-++||||++|.|+.+ .|....+..++..++ -.++.|.||||..
T Consensus 45 ~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG 93 (195)
T cd08166 45 IVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIG 93 (195)
T ss_pred EEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcC
Confidence 589999999999853 346777777765433 4688999999973
No 128
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.00 E-value=0.085 Score=54.89 Aligned_cols=196 Identities=19% Similarity=0.242 Sum_probs=102.6
Q ss_pred EEecCCCC------HHHHHHHHHHhCCCCCCCCcceeeEEeeccccC--CCCC-----hHHHHHHHHHhhhhCCCCeEEE
Q 004569 448 IFGDLHGQ------FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVD--RGQH-----SLETITLLLALKVEYPNNVHLI 514 (744)
Q Consensus 448 VvGDIHG~------~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVD--RG~~-----slEvl~lL~~LK~~~P~~v~lL 514 (744)
.|+|+|=. -+-|+++++.... ..+ .+.+|||++| .|.+ --+|...|..+ ..-..+++.+
T Consensus 2 FISDlHL~~~~p~~t~~fl~Fl~~~a~-~ad------~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~-a~~G~~v~~i 73 (237)
T COG2908 2 FISDLHLGPKRPALTAFFLDFLREEAA-QAD------ALYILGDIFDGWIGDDEPPQLHRQVAQKLLRL-ARKGTRVYYI 73 (237)
T ss_pred eeeccccCCCCcHHHHHHHHHHHhccc-cCc------EEEEechhhhhhhcCCcccHHHHHHHHHHHHH-HhcCCeEEEe
Confidence 68899943 3345555555332 223 7999999998 2332 23555555554 3456899999
Q ss_pred ecCccccchhhhcCChHHHHHHhCcccchhhhhhhhhHhhccceeeEE---eCcEEEecCCCCCCCCC------------
Q 004569 515 RGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALI---EKKIICMHGGIGRSINH------------ 579 (744)
Q Consensus 515 RGNHE~~~l~~~~gf~~E~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i---~~~il~vHGGi~~~~~~------------ 579 (744)
.||||. .+...+ ....|. +.-+|-...+ +.+++++||-.--....
T Consensus 74 ~GN~Df-ll~~~f------~~~~g~-------------~~l~~~~~~~~l~g~~~Ll~HGD~f~t~~~~y~~~r~~~~~~ 133 (237)
T COG2908 74 HGNHDF-LLGKRF------AQEAGG-------------MTLLPDPIVLDLYGKRILLAHGDTFCTDDRAYQWFRYKVHWA 133 (237)
T ss_pred cCchHH-HHHHHH------HhhcCc-------------eEEcCcceeeeecCcEEEEEeCCcccchHHHHHHHHHHcccH
Confidence 999995 332221 111221 2234444433 47999999976432110
Q ss_pred hhhhhhccCCccccCCcceeeeccccCCCCCCCCCCcccCCCCC--CceeeCHHHHHHHHHHcCCeEEEEcccccccceE
Q 004569 580 VEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGP--GLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFE 657 (744)
Q Consensus 580 l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~--g~~~Fg~~~v~~fL~~n~l~~IIRgHe~v~~G~~ 657 (744)
..++.-+..|+.... .+..=+|+.-. |.+..... ...-..+..+.+-+++++++.+|.||.-.+..-.
T Consensus 134 ~~~~lflnl~l~~R~---ri~~k~r~~s~-------~~k~~~~~~~~i~d~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~~ 203 (237)
T COG2908 134 WLQLLFLNLPLRVRR---RIAYKIRSLSS-------WAKKKVKKAVNIMDVNPAAVADEARRHGVDGVIHGHTHRPAIHN 203 (237)
T ss_pred HHHHHHHHhHHHHHH---HHHHHHHHhhH-------HhHHhhhhHHHHHHhhHHHHHHHHHHcCCCEEEecCcccHhhcc
Confidence 001111122222000 01111344331 11110000 0122467788889999999999999987655443
Q ss_pred EecCCeEEEEeccCCCC--CCCCCeEEEEEEcCCce
Q 004569 658 RFAQGHLITLFSATNYC--GTANNAGAILVLGRDLV 691 (744)
Q Consensus 658 ~~~~~~liTVFSa~nY~--~~~~N~gavl~i~~~~~ 691 (744)
... ..|| |.--..|+++.++.+..
T Consensus 204 i~~----------~~yi~lGdW~~~~s~~~v~~~~~ 229 (237)
T COG2908 204 IPG----------ITYINLGDWVSEGSILEVDDGGL 229 (237)
T ss_pred CCC----------ceEEecCcchhcceEEEEecCcE
Confidence 322 2232 22224678888877653
No 129
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=94.89 E-value=0.063 Score=54.56 Aligned_cols=65 Identities=18% Similarity=0.104 Sum_probs=40.9
Q ss_pred cCCCCHHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCCh-HHHHHHHHHhhhhC---------------------C
Q 004569 451 DLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS-LETITLLLALKVEY---------------------P 508 (744)
Q Consensus 451 DIHG~~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~s-lEvl~lL~~LK~~~---------------------P 508 (744)
|++|+=.=|.++++.+-...... .++||||++|.|--+ -|--....+++..+ .
T Consensus 24 d~~~~D~YL~~~~~~~~~~l~Pd-----~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~ 98 (193)
T cd08164 24 DLFGNDYFLGHIVSMMQFWLKPD-----AVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGK 98 (193)
T ss_pred hhhhhHHHHHHHHHHHHHhcCCC-----EEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCC
Confidence 45666666777777654322211 689999999987533 23334455554433 1
Q ss_pred CCeEEEecCccc
Q 004569 509 NNVHLIRGNHEA 520 (744)
Q Consensus 509 ~~v~lLRGNHE~ 520 (744)
-.+++|.||||.
T Consensus 99 i~~i~V~GNHDI 110 (193)
T cd08164 99 TPLINIAGNHDV 110 (193)
T ss_pred ceEEEECCcccC
Confidence 456899999998
No 130
>smart00612 Kelch Kelch domain.
Probab=94.76 E-value=0.079 Score=39.82 Aligned_cols=37 Identities=27% Similarity=0.439 Sum_probs=27.4
Q ss_pred CccceeEEEEecCCCCceEEEEcCCCCCCCCceeEEEEECC
Q 004569 50 LQPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNA 90 (744)
Q Consensus 50 ~~~l~D~~~l~~~~~~~W~w~~~~g~~P~pR~~Hsaa~~g~ 90 (744)
...+++++.|+... .+| ...+ +||.+|..|+++++++
T Consensus 11 ~~~~~~v~~yd~~~-~~W--~~~~-~~~~~r~~~~~~~~~g 47 (47)
T smart00612 11 GQRLKSVEVYDPET-NKW--TPLP-SMPTPRSGHGVAVING 47 (47)
T ss_pred CceeeeEEEECCCC-CeE--ccCC-CCCCccccceEEEeCC
Confidence 45688999887653 345 4444 6899999999998764
No 131
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=94.23 E-value=0.12 Score=50.62 Aligned_cols=68 Identities=18% Similarity=0.356 Sum_probs=49.3
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCcc
Q 004569 447 KIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHE 519 (744)
Q Consensus 447 ~VvGDIHG~~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE 519 (744)
.|+||+||+++.+..-++.+.-. .+. ..-+|++||+..-.... +-+.-++.=..+.|--.+++-||||
T Consensus 1 LV~G~~~G~l~~~~~kv~~~~~k--~gp--Fd~~ic~Gdff~~~~~~-~~~~~y~~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 1 LVCGDVNGRLKALFEKVNTINKK--KGP--FDALLCVGDFFGDDEDD-EELEAYKDGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred CeeecCCccHHHHHHHHHHHhcc--cCC--eeEEEEecCccCCccch-hhHHHHhcCCccCCCCEEEECCCCC
Confidence 48999999999998888775321 121 12588899999866655 3444444455678889999999998
No 132
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=93.81 E-value=0.13 Score=57.64 Aligned_cols=73 Identities=22% Similarity=0.205 Sum_probs=48.3
Q ss_pred CceEEEecCCCC-------------HHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChHHHHHHHHHhhhhCC--
Q 004569 444 APIKIFGDLHGQ-------------FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYP-- 508 (744)
Q Consensus 444 ~pi~VvGDIHG~-------------~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P-- 508 (744)
+++..++|+|=- +..|..+++.+.-...+ -+|+-||+.|+..=|.+++.++...-.+.-
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD------~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~ 74 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVD------FVLIAGDLFDTNNPSPRALKLFLEALRRLKDA 74 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCC------EEEEccccccCCCCCHHHHHHHHHHHHHhccC
Confidence 467888999822 23344444443322222 589999999999888888766554433322
Q ss_pred -CCeEEEecCccccc
Q 004569 509 -NNVHLIRGNHEAAD 522 (744)
Q Consensus 509 -~~v~lLRGNHE~~~ 522 (744)
-.||+|.||||...
T Consensus 75 ~Ipv~~I~GNHD~~~ 89 (390)
T COG0420 75 GIPVVVIAGNHDSPS 89 (390)
T ss_pred CCcEEEecCCCCchh
Confidence 37999999999865
No 133
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=93.71 E-value=0.13 Score=53.86 Aligned_cols=66 Identities=33% Similarity=0.360 Sum_probs=42.2
Q ss_pred ceEEEecCCCCH---------HHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChH-----HHHHHHHHhhhhCCCC
Q 004569 445 PIKIFGDLHGQF---------GDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSL-----ETITLLLALKVEYPNN 510 (744)
Q Consensus 445 pi~VvGDIHG~~---------~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~sl-----Evl~lL~~LK~~~P~~ 510 (744)
.|+.++|+||.+ ..|.++++...-...+ .-+|..||+++....+- .++..|.++ .-
T Consensus 2 ~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~-----~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~-----g~ 71 (252)
T cd00845 2 TILHTNDLHGHFEPAGGVGGAARLATLIKEERAENEN-----TLLLDAGDNFDGSPPSTATKGEANIELMNAL-----GY 71 (252)
T ss_pred EEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCC-----eEEEeCCccCCCccchhccCCcHHHHHHHhc-----CC
Confidence 478899999887 4566666665432111 14577999999887643 444444443 22
Q ss_pred eEEEecCccc
Q 004569 511 VHLIRGNHEA 520 (744)
Q Consensus 511 v~lLRGNHE~ 520 (744)
.++..||||.
T Consensus 72 d~~~~GNHe~ 81 (252)
T cd00845 72 DAVTIGNHEF 81 (252)
T ss_pred CEEeeccccc
Confidence 3455699996
No 134
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=93.58 E-value=0.16 Score=54.89 Aligned_cols=71 Identities=25% Similarity=0.262 Sum_probs=46.5
Q ss_pred CceEEEecCCCCHHH--HHHHHHHhCCCCCCCCcceeeEEeeccccCC-CC-ChHHHHHHHHHhhhhCCCCeEEEecCcc
Q 004569 444 APIKIFGDLHGQFGD--LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDR-GQ-HSLETITLLLALKVEYPNNVHLIRGNHE 519 (744)
Q Consensus 444 ~pi~VvGDIHG~~~d--L~~il~~~g~p~~~~~~~~~~~vFLGDyVDR-G~-~slEvl~lL~~LK~~~P~~v~lLRGNHE 519 (744)
.+|+-++|+|-.... ..+.+........+ -+++.|||+|+ .+ ..-.++..|..|+. |-.+|.+.||||
T Consensus 45 ~~iv~lSDlH~~~~~~~~~~~~~~i~~~~~D------livltGD~~~~~~~~~~~~~~~~L~~L~~--~~gv~av~GNHd 116 (284)
T COG1408 45 LKIVQLSDLHSLPFREEKLALLIAIANELPD------LIVLTGDYVDGDRPPGVAALALFLAKLKA--PLGVFAVLGNHD 116 (284)
T ss_pred eEEEEeehhhhchhhHHHHHHHHHHHhcCCC------EEEEEeeeecCCCCCCHHHHHHHHHhhhc--cCCEEEEecccc
Confidence 459999999977554 22233332222222 68999999995 44 44555566666654 457999999998
Q ss_pred ccc
Q 004569 520 AAD 522 (744)
Q Consensus 520 ~~~ 522 (744)
...
T Consensus 117 ~~~ 119 (284)
T COG1408 117 YGV 119 (284)
T ss_pred ccc
Confidence 743
No 135
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=93.45 E-value=0.26 Score=51.45 Aligned_cols=71 Identities=23% Similarity=0.321 Sum_probs=43.5
Q ss_pred cCceEEEecCCCCHHH----------------HHHHHHH-hCCCCCCCCcceeeEEeeccccCCCCC-----hHHHHHHH
Q 004569 443 KAPIKIFGDLHGQFGD----------------LMRLFDE-YGSPSTAGDIAYIDYLFLGDYVDRGQH-----SLETITLL 500 (744)
Q Consensus 443 ~~pi~VvGDIHG~~~d----------------L~~il~~-~g~p~~~~~~~~~~~vFLGDyVDRG~~-----slEvl~lL 500 (744)
...+.|+.|+|=-|+. +.+.+.. ......+ ++|+|||+-.-.+. ..|+..++
T Consensus 19 ~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~------~lIilGD~KH~~~~~~~~e~~~~~~f~ 92 (235)
T COG1407 19 LGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPK------RLIILGDLKHEFGKSLRQEKEEVREFL 92 (235)
T ss_pred cCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCC------EEEEcCccccccCccccccHHHHHHHH
Confidence 4789999999944432 2222221 1111112 79999999975443 34555555
Q ss_pred HHhhhhCCCCeEEEecCccccc
Q 004569 501 LALKVEYPNNVHLIRGNHEAAD 522 (744)
Q Consensus 501 ~~LK~~~P~~v~lLRGNHE~~~ 522 (744)
-.++.. .+.+++||||...
T Consensus 93 ~~~~~~---evi~i~GNHD~~i 111 (235)
T COG1407 93 ELLDER---EVIIIRGNHDNGI 111 (235)
T ss_pred HHhccC---cEEEEeccCCCcc
Confidence 554433 5999999999843
No 136
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=92.63 E-value=0.34 Score=47.31 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=28.8
Q ss_pred eEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccccc
Q 004569 479 DYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAAD 522 (744)
Q Consensus 479 ~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~ 522 (744)
.+.+|||+.-.-..--+...++-+| |+++++++||||--.
T Consensus 48 ~lwhLGDl~~~~n~~~~a~~IlerL----nGrkhlv~GNhDk~~ 87 (186)
T COG4186 48 VLWHLGDLSSGANRERAAGLILERL----NGRKHLVPGNHDKCH 87 (186)
T ss_pred eEEEecccccccchhhHHHHHHHHc----CCcEEEeeCCCCCCc
Confidence 6889999986555444444444444 689999999999743
No 137
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=90.65 E-value=0.43 Score=50.96 Aligned_cols=21 Identities=14% Similarity=0.309 Sum_probs=15.9
Q ss_pred HHHHHHHH-cCCeEEEEccccc
Q 004569 632 RVMEFCNN-NDLQLIVRAHECV 652 (744)
Q Consensus 632 ~v~~fL~~-n~l~~IIRgHe~v 652 (744)
...+++++ -++++||-||+-.
T Consensus 208 ~~~~la~~~~~vD~IlgGHsH~ 229 (277)
T cd07410 208 AAYELAEEVPGIDAILTGHQHR 229 (277)
T ss_pred HHHHHHhcCCCCcEEEeCCCcc
Confidence 34566666 6899999999865
No 138
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=90.23 E-value=0.36 Score=50.04 Aligned_cols=73 Identities=22% Similarity=0.339 Sum_probs=43.3
Q ss_pred CceEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChH-------------------------HHHH
Q 004569 444 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSL-------------------------ETIT 498 (744)
Q Consensus 444 ~pi~VvGDIHG~~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~sl-------------------------Evl~ 498 (744)
.+|..++|.||+++.|.++.+.+.-...+ -+||+||++-....+- |.+.
T Consensus 6 ~kilA~s~~~g~~e~l~~l~~~~~e~~~D------~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~ 79 (255)
T PF14582_consen 6 RKILAISNFRGDFELLERLVEVIPEKGPD------AVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALD 79 (255)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHT-S------EEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHH
T ss_pred hhheeecCcchHHHHHHHHHhhccccCCC------EEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHH
Confidence 46899999999999999998876433333 6999999996543333 3333
Q ss_pred HHHHhhhhCCCCeEEEecCccccc
Q 004569 499 LLLALKVEYPNNVHLIRGNHEAAD 522 (744)
Q Consensus 499 lL~~LK~~~P~~v~lLRGNHE~~~ 522 (744)
-++..--..+--+++|.||||...
T Consensus 80 ~ff~~L~~~~~p~~~vPG~~Dap~ 103 (255)
T PF14582_consen 80 KFFRILGELGVPVFVVPGNMDAPE 103 (255)
T ss_dssp HHHHHHHCC-SEEEEE--TTS-SH
T ss_pred HHHHHHHhcCCcEEEecCCCCchH
Confidence 344433456678999999999854
No 139
>PLN02533 probable purple acid phosphatase
Probab=89.23 E-value=0.54 Score=53.65 Aligned_cols=25 Identities=8% Similarity=0.214 Sum_probs=20.8
Q ss_pred HHHHHHHHHHcCCeEEEEccccccc
Q 004569 630 PDRVMEFCNNNDLQLIVRAHECVMD 654 (744)
Q Consensus 630 ~~~v~~fL~~n~l~~IIRgHe~v~~ 654 (744)
.+.++.+++++++++++-||.-..+
T Consensus 311 r~~le~Ll~~~~VdlvlsGH~H~Ye 335 (427)
T PLN02533 311 KESMETLLYKARVDLVFAGHVHAYE 335 (427)
T ss_pred HHHHHHHHHHhCCcEEEecceeccc
Confidence 3578889999999999999987543
No 140
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=88.84 E-value=0.8 Score=51.49 Aligned_cols=57 Identities=32% Similarity=0.354 Sum_probs=39.3
Q ss_pred HHHHHHHhCCCCCCCCcceeeEEeeccccCCCCCh--HHHHHHHHHhhhhCCC----CeEEEecCccc
Q 004569 459 LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS--LETITLLLALKVEYPN----NVHLIRGNHEA 520 (744)
Q Consensus 459 L~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~s--lEvl~lL~~LK~~~P~----~v~lLRGNHE~ 520 (744)
|.+.|....+....+ -++||||++|-|... -|--....++|..||. .++.+.||||-
T Consensus 81 lrr~f~~~~~~lkPd-----vvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~~k~~~~~~~i~GNhDI 143 (410)
T KOG3662|consen 81 LRRSFDMSQWRLKPD-----VVFFLGDLFDEGQWAGDEEFKKRYERFKKIFGRKGNIKVIYIAGNHDI 143 (410)
T ss_pred HHHHHHHHHhccCCC-----EEEEeccccccCccCChHHHHHHHHHHHHhhCCCCCCeeEEeCCcccc
Confidence 555666554433221 578899999988753 4555666667766664 68899999997
No 141
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=87.21 E-value=4.1 Score=46.65 Aligned_cols=191 Identities=18% Similarity=0.175 Sum_probs=99.4
Q ss_pred CceEEEecCCC-CHHHH----HHHHHHhCCCCCCCCcceeeEEe-eccccCCC------------CChHHHHHHHHHhhh
Q 004569 444 APIKIFGDLHG-QFGDL----MRLFDEYGSPSTAGDIAYIDYLF-LGDYVDRG------------QHSLETITLLLALKV 505 (744)
Q Consensus 444 ~pi~VvGDIHG-~~~dL----~~il~~~g~p~~~~~~~~~~~vF-LGDyVDRG------------~~slEvl~lL~~LK~ 505 (744)
..+..++|+|= ...-+ ..+++.++-+.. --...+|+. -||.||.. .+-.|-...+-.+-.
T Consensus 226 v~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~--~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~ 303 (481)
T COG1311 226 VYVALISDIHRGSKEFLEDEFEKFIDWLNGPGD--LASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLD 303 (481)
T ss_pred eEEEEEeeeecccHHHHHHHHHHHHHHhcCCcc--cccceEEEEEecccccccccccCcccccccccchHHHHHHHHHHh
Confidence 34889999994 33333 333344433321 111235655 67999942 133344455555544
Q ss_pred hCCC--CeEEEecCccccchhhhc-CChHHHHHHhCcccchhhhhhhhhHhhccceeeEEeC-cEEEecCCCCCCCCChh
Q 004569 506 EYPN--NVHLIRGNHEAADINALF-GFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEK-KIICMHGGIGRSINHVE 581 (744)
Q Consensus 506 ~~P~--~v~lLRGNHE~~~l~~~~-gf~~E~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~-~il~vHGGi~~~~~~l~ 581 (744)
.-|. .|++.+||||......-. .|...... ++...+-.|=.=|....+++ .+|..|| .+++
T Consensus 304 ~vp~~I~v~i~PGnhDa~r~a~PQp~~~~~~ks---------lf~~~n~~~v~NP~~~~l~G~~vL~~hG------~sid 368 (481)
T COG1311 304 QVPEHIKVFIMPGNHDAVRQALPQPHFPELIKS---------LFSLNNLLFVSNPALVSLHGVDVLIYHG------RSID 368 (481)
T ss_pred hCCCCceEEEecCCCCccccccCCCCcchhhcc---------cccccceEecCCCcEEEECCEEEEEecC------CCHH
Confidence 5554 478899999986543221 23222222 22222212222244444443 6778887 3556
Q ss_pred hhhhccCCccccCCc-------------ceeeeccccCCCCCCCCCCcccCCCCCCceeeCHHHHHHHHHHcCCeEEEEc
Q 004569 582 QIENLQRPITMEAGS-------------IVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRA 648 (744)
Q Consensus 582 ~I~~i~Rp~~~~~~~-------------~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~Fg~~~v~~fL~~n~l~~IIRg 648 (744)
+|...-......... +..-+-+|.-|...| +| .=.---++++-|
T Consensus 369 Dii~~vP~~~~~~~~~ame~lLk~rHlaPtygg~~p~aP~~kD---------------~l--------VIeevPDv~~~G 425 (481)
T COG1311 369 DIIKLVPGADYDSPLKAMEELLKRRHLAPTYGGTLPIAPETKD---------------YL--------VIEEVPDVFHTG 425 (481)
T ss_pred HHHhhCCCCCccchHHHHHHHHHhcccCCCCCCccccccCCcC---------------ce--------eeccCCcEEEEc
Confidence 655543322211100 122233455454321 01 111124677889
Q ss_pred ccccccceEEecCCeEEEEeccCCCCC
Q 004569 649 HECVMDGFERFAQGHLITLFSATNYCG 675 (744)
Q Consensus 649 He~v~~G~~~~~~~~liTVFSa~nY~~ 675 (744)
|+.. .|+..+.+.++|-.++-+.+..
T Consensus 426 hvh~-~g~~~y~gv~~vns~T~q~qTe 451 (481)
T COG1311 426 HVHK-FGTGVYEGVNLVNSGTWQEQTE 451 (481)
T ss_pred cccc-cceeEEeccceEEeeeecchhc
Confidence 9987 8999998989999988887643
No 142
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=85.56 E-value=1.7 Score=45.93 Aligned_cols=24 Identities=13% Similarity=0.332 Sum_probs=20.0
Q ss_pred HHHHHHHHHHcCCeEEEEcccccc
Q 004569 630 PDRVMEFCNNNDLQLIVRAHECVM 653 (744)
Q Consensus 630 ~~~v~~fL~~n~l~~IIRgHe~v~ 653 (744)
...+.+++++.++++++-||.-..
T Consensus 190 ~~~l~~l~~~~~v~~vl~GH~H~~ 213 (277)
T cd07378 190 VDRLLPLLKKYKVDAYLSGHDHNL 213 (277)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccc
Confidence 356788999999999999998653
No 143
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=84.35 E-value=1.5 Score=47.31 Aligned_cols=66 Identities=29% Similarity=0.369 Sum_probs=40.8
Q ss_pred ceEEEecCCCCHHH--------------HHHHHHHhCCCCCCCCcceeeEEeeccccCCCCC-h-----HHHHHHHHHhh
Q 004569 445 PIKIFGDLHGQFGD--------------LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQH-S-----LETITLLLALK 504 (744)
Q Consensus 445 pi~VvGDIHG~~~d--------------L~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~-s-----lEvl~lL~~LK 504 (744)
.|+.+.|+||++.. |..+++........ .-+|..||++...+. + -.++.++-++.
T Consensus 2 ~il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~~-----~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~~g 76 (288)
T cd07412 2 QILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQNPN-----SLFVSAGDLIGASPFESALLQDEPTIEALNAMG 76 (288)
T ss_pred eEEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcCCC-----eEEEeCCcccccccchhhcccCCcHHHHHHhhC
Confidence 47789999998653 55566655322111 147779999987654 2 24455555553
Q ss_pred hhCCCCeEEEecCccc
Q 004569 505 VEYPNNVHLIRGNHEA 520 (744)
Q Consensus 505 ~~~P~~v~lLRGNHE~ 520 (744)
. . .+..||||.
T Consensus 77 ~----D-a~t~GNHef 87 (288)
T cd07412 77 V----D-ASAVGNHEF 87 (288)
T ss_pred C----e-eeeeccccc
Confidence 2 2 455699996
No 144
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=83.75 E-value=1.1 Score=52.68 Aligned_cols=69 Identities=20% Similarity=0.206 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHcCCe----EEEEcccccc--cceE-EecCCeEEEE---eccCCCCCCCCCeEEEEEEcCCceEEEEEec
Q 004569 629 GPDRVMEFCNNNDLQ----LIVRAHECVM--DGFE-RFAQGHLITL---FSATNYCGTANNAGAILVLGRDLVVVPKLIH 698 (744)
Q Consensus 629 g~~~v~~fL~~n~l~----~IIRgHe~v~--~G~~-~~~~~~liTV---FSa~nY~~~~~N~gavl~i~~~~~~~~~~~~ 698 (744)
.++..+..|+.+||+ .||-||.+|. +|=. .-++||++.| ||.. |-...+= |++-.|.+.--+....-+
T Consensus 507 ~e~~c~~IL~EFgl~~~~~hIINGHvPVk~k~GEsPIKa~Gkl~VIDGGfskA-Yqk~TGI-AGYTLiyNS~gl~L~~H~ 584 (640)
T PF06874_consen 507 DEEICDKILEEFGLDPERGHIINGHVPVKVKKGESPIKANGKLIVIDGGFSKA-YQKTTGI-AGYTLIYNSYGLQLVAHQ 584 (640)
T ss_pred CHHHHHHHHHHhCCCCCCCeEECCccccccCCCCCCccCCCEEEEEcChhhhh-hccccCc-cceEEEecCCcceeccCC
Confidence 678888999999999 9999999997 5533 4689999999 7766 5544333 445555444444443434
Q ss_pred C
Q 004569 699 P 699 (744)
Q Consensus 699 ~ 699 (744)
|
T Consensus 585 p 585 (640)
T PF06874_consen 585 P 585 (640)
T ss_pred C
Confidence 4
No 145
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=83.74 E-value=2.1 Score=45.29 Aligned_cols=65 Identities=23% Similarity=0.233 Sum_probs=38.6
Q ss_pred ceEEEecCCCCHH----------HHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCCh-----HHHHHHHHHhhhhCCC
Q 004569 445 PIKIFGDLHGQFG----------DLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS-----LETITLLLALKVEYPN 509 (744)
Q Consensus 445 pi~VvGDIHG~~~----------dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~s-----lEvl~lL~~LK~~~P~ 509 (744)
.|+-+.|+||++. .|..+++...-.+. .-+|..||+++..+.+ ..++..|-.+. -
T Consensus 2 ~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~~------~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~g----~ 71 (257)
T cd07408 2 TILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLDN------DLLVDAGDAIQGLPISDLDKGETIIKIMNAVG----Y 71 (257)
T ss_pred EEEEeccCcccccCCCCccccHHHHHHHHHHHHhcCC------EEEEeCCCcCCCchhhhhcCCcHHHHHHHhcC----C
Confidence 4678999999853 45556665532211 1577799999876543 23333333331 2
Q ss_pred CeEEEecCccc
Q 004569 510 NVHLIRGNHEA 520 (744)
Q Consensus 510 ~v~lLRGNHE~ 520 (744)
.+ +..||||.
T Consensus 72 d~-~~~GNHef 81 (257)
T cd07408 72 DA-VTPGNHEF 81 (257)
T ss_pred cE-Eccccccc
Confidence 33 45699996
No 146
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=82.31 E-value=33 Score=36.66 Aligned_cols=47 Identities=15% Similarity=0.231 Sum_probs=28.5
Q ss_pred EEEEcccccccceEEecC--CeEEEEeccCCCCCCCCCeEEEEEE-cCCceEEEE
Q 004569 644 LIVRAHECVMDGFERFAQ--GHLITLFSATNYCGTANNAGAILVL-GRDLVVVPK 695 (744)
Q Consensus 644 ~IIRgHe~v~~G~~~~~~--~~liTVFSa~nY~~~~~N~gavl~i-~~~~~~~~~ 695 (744)
.++-||+.. -|.+.+.+ ++-+.+.|.|.|.. .|.+.++ =+++++.+.
T Consensus 206 Vyf~Gnq~~-f~t~~~~~~~~~~v~lv~vP~Fs~----t~~~vlvdl~tLe~~~v 255 (257)
T cd07387 206 VYFAGNQPK-FGTKLVEGEEGQRVLLVCVPSFSK----TGTAVLVNLRTLECEPI 255 (257)
T ss_pred EEEeCCCcc-eeeeEEEcCCCCeEEEEEeCCcCc----CCEEEEEECCcCcEEEE
Confidence 445678775 45555433 66788888898864 3444444 446766654
No 147
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=81.74 E-value=3 Score=44.27 Aligned_cols=35 Identities=26% Similarity=0.212 Sum_probs=20.9
Q ss_pred EEeeccccCCCCChH-----HHHHHHHHhhhhCCCCeEEEecCccc
Q 004569 480 YLFLGDYVDRGQHSL-----ETITLLLALKVEYPNNVHLIRGNHEA 520 (744)
Q Consensus 480 ~vFLGDyVDRG~~sl-----Evl~lL~~LK~~~P~~v~lLRGNHE~ 520 (744)
+|..||+++..+.+. .++..+-++ + --.+. ||||.
T Consensus 55 ~l~~GD~~~gs~~~~~~~g~~~~~~l~~~----g-~da~~-GNHef 94 (264)
T cd07411 55 LLDGGDTWQGSGEALYTRGQAMVDALNAL----G-VDAMV-GHWEF 94 (264)
T ss_pred EEeCCCccCCChHHhhcCChhHHHHHHhh----C-CeEEe-ccccc
Confidence 456999998876432 334444443 2 23344 99996
No 148
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=74.61 E-value=5 Score=51.68 Aligned_cols=66 Identities=20% Similarity=0.208 Sum_probs=39.6
Q ss_pred ceEEEecCCCCHH---HHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCCh-----HHHHHHHHHhhhhCCCCeEEEec
Q 004569 445 PIKIFGDLHGQFG---DLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS-----LETITLLLALKVEYPNNVHLIRG 516 (744)
Q Consensus 445 pi~VvGDIHG~~~---dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~s-----lEvl~lL~~LK~~~P~~v~lLRG 516 (744)
.|+.+.|+||++. .+..+++...-...+ .-+|..||+++..+.+ ..++.+|-.+ +--++..|
T Consensus 662 ~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~-----~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~l-----g~d~~~~G 731 (1163)
T PRK09419 662 TILHTNDFHGHLDGAAKRVTKIKEVKEENPN-----TILVDAGDVYQGSLYSNLLKGLPVLKMMKEM-----GYDASTFG 731 (1163)
T ss_pred EEEEEeecccCCCCHHHHHHHHHHHHhhCCC-----eEEEecCCCCCCcchhhhcCChHHHHHHhCc-----CCCEEEec
Confidence 4889999999863 444445443321111 1233489999987644 2345554444 23366899
Q ss_pred Cccc
Q 004569 517 NHEA 520 (744)
Q Consensus 517 NHE~ 520 (744)
|||.
T Consensus 732 NHEf 735 (1163)
T PRK09419 732 NHEF 735 (1163)
T ss_pred cccc
Confidence 9996
No 149
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=72.92 E-value=6.6 Score=42.14 Aligned_cols=45 Identities=29% Similarity=0.363 Sum_probs=28.9
Q ss_pred eEEeeccccCCCCChH--H------HHHHHHHhhhhCC-CCeEEEecCccccch
Q 004569 479 DYLFLGDYVDRGQHSL--E------TITLLLALKVEYP-NNVHLIRGNHEAADI 523 (744)
Q Consensus 479 ~~vFLGDyVDRG~~sl--E------vl~lL~~LK~~~P-~~v~lLRGNHE~~~l 523 (744)
-+|+.||+|+.+.... + .-.+...++..+| -.|+.+.||||....
T Consensus 71 fii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~p~ 124 (296)
T cd00842 71 FILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSYPV 124 (296)
T ss_pred EEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCCcc
Confidence 5889999998776421 1 1223333444444 469999999998643
No 150
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=71.11 E-value=10 Score=40.67 Aligned_cols=66 Identities=21% Similarity=0.255 Sum_probs=36.5
Q ss_pred ceEEEecCCCCH---------------------HHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCCh-----HHHHH
Q 004569 445 PIKIFGDLHGQF---------------------GDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS-----LETIT 498 (744)
Q Consensus 445 pi~VvGDIHG~~---------------------~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~s-----lEvl~ 498 (744)
.|+-++|+||++ ..+..+++........ .-+|..||+++..+.+ ..++.
T Consensus 2 ~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~~r~~~~~-----~l~ld~GD~~~gs~~~~~~~g~~~~~ 76 (281)
T cd07409 2 TILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKELRAENPN-----VLFLNAGDAFQGTLWYTLYKGNADAE 76 (281)
T ss_pred EEEEeccccccccccCccccccccccccccCCHHHHHHHHHHHHhcCCC-----EEEEeCCCCCCCcchhhhcCChHHHH
Confidence 367789999875 3344455544321111 1355589999876532 23334
Q ss_pred HHHHhhhhCCCCeEEEecCccc
Q 004569 499 LLLALKVEYPNNVHLIRGNHEA 520 (744)
Q Consensus 499 lL~~LK~~~P~~v~lLRGNHE~ 520 (744)
.|-.+. -. .+..||||.
T Consensus 77 ~ln~~g----~D-~~~lGNHef 93 (281)
T cd07409 77 FMNLLG----YD-AMTLGNHEF 93 (281)
T ss_pred HHHhcC----CC-EEEeccccc
Confidence 433332 13 444599996
No 151
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=70.42 E-value=8.1 Score=40.86 Aligned_cols=58 Identities=21% Similarity=0.414 Sum_probs=40.9
Q ss_pred ECCEEEEEeccCCCCCccCCCceEEEEECCC----CcEEeCCCCCCCCCCCCCCcccCCCCccccccccccEEEEEE-CC
Q 004569 88 VNARLHVSGGALGGGRMVEDSSSVAVLDTAA----GVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAV-GD 162 (744)
Q Consensus 88 ~g~~LyV~GG~~~~~~~~~~~~sv~~yD~~t----~~W~~~~~~~~~~R~g~~~~~~~~~d~~~~~~~R~~Hsa~v~-~~ 162 (744)
-+++++++||...+. .. +-.|++.+ ..|.+....... +|+..+++.+ +|
T Consensus 76 ~dG~ll~tGG~~~G~---~~---ir~~~p~~~~~~~~w~e~~~~m~~--------------------~RWYpT~~~L~DG 129 (243)
T PF07250_consen 76 PDGRLLQTGGDNDGN---KA---IRIFTPCTSDGTCDWTESPNDMQS--------------------GRWYPTATTLPDG 129 (243)
T ss_pred CCCCEEEeCCCCccc---cc---eEEEecCCCCCCCCceECcccccC--------------------CCccccceECCCC
Confidence 368899999976532 22 67788764 679876543233 4776777776 58
Q ss_pred eEEEEcccc
Q 004569 163 LIFIYGGLR 171 (744)
Q Consensus 163 ~IYV~GG~~ 171 (744)
+++|.||..
T Consensus 130 ~vlIvGG~~ 138 (243)
T PF07250_consen 130 RVLIVGGSN 138 (243)
T ss_pred CEEEEeCcC
Confidence 999999976
No 152
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=69.89 E-value=11 Score=41.71 Aligned_cols=50 Identities=20% Similarity=0.120 Sum_probs=34.9
Q ss_pred eeCHHHHHHHHHHcCCeEEEEcccccccceEEecCCe-EEEEeccCCCCCC
Q 004569 627 TFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGH-LITLFSATNYCGT 676 (744)
Q Consensus 627 ~Fg~~~v~~fL~~n~l~~IIRgHe~v~~G~~~~~~~~-liTVFSa~nY~~~ 676 (744)
..|..++++.|+...-++=.-||=-+.---.+.++.+ =.|=|+|..=|-.
T Consensus 204 ~LGSp~~~eLL~~LkP~yWfsAHLH~KFaA~v~H~~~~~~tkflaldKclp 254 (456)
T KOG2863|consen 204 KLGSPALEELLEDLKPQYWFSAHLHVKFAALVQHNKRSHVTKFLALDKCLP 254 (456)
T ss_pred CcCChHHHHHHHHhCcchhhhhhHhhHHhhhhcccCcCCCcccccccccCC
Confidence 3588999999999999988888866543322334333 3677888877754
No 153
>PF08321 PPP5: PPP5 TPR repeat region; InterPro: IPR013235 This domain is specific to the PPP5 subfamily of serine/threonine phosphatases.; GO: 0004722 protein serine/threonine phosphatase activity, 0046872 metal ion binding; PDB: 3ICF_B 3H60_B 3H63_A 3H66_A 3H62_B 1A17_A 1S95_B 3H69_A 3H68_D 3H64_D ....
Probab=69.40 E-value=9.3 Score=34.51 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=31.2
Q ss_pred CchHHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeee
Q 004569 391 NSVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQL 442 (744)
Q Consensus 391 ~~~~~~~i~~ll~~~~~~~~~~~~~~l~~~~i~~L~~~a~~il~~ep~ll~l 442 (744)
..+++.+|+.+-..+ .|....+..|+.+|.++|+++|+++++
T Consensus 54 ~efv~~mie~FK~~K----------~Lhkkyv~~Il~~~~~llk~~PslVeI 95 (95)
T PF08321_consen 54 LEFVKAMIEWFKNQK----------KLHKKYVYQILLEAKKLLKQLPSLVEI 95 (95)
T ss_dssp HHHHHHHHHHHHCT--------------HHHHHHHHHHHHHHHHTS-SEEEE
T ss_pred HHHHHHHHHHHHhCC----------CccHHHHHHHHHHHHHHHHhCcCccCC
Confidence 346778888866443 477888999999999999999999986
No 154
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=65.90 E-value=13 Score=37.58 Aligned_cols=40 Identities=30% Similarity=0.340 Sum_probs=29.5
Q ss_pred eEEeecccc--CCCCChHHHHHHHHHhhhhCCCCeEEEecCccccc
Q 004569 479 DYLFLGDYV--DRGQHSLETITLLLALKVEYPNNVHLIRGNHEAAD 522 (744)
Q Consensus 479 ~~vFLGDyV--DRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~ 522 (744)
.++.-||+- -|=+...+=+.+|-+| |+.=+++|||||...
T Consensus 46 iVllpGDiSWaM~l~ea~~Dl~~i~~L----PG~K~m~rGNHDYWw 87 (230)
T COG1768 46 IVLLPGDISWAMRLEEAEEDLRFIGDL----PGTKYMIRGNHDYWW 87 (230)
T ss_pred EEEecccchhheechhhhhhhhhhhcC----CCcEEEEecCCcccc
Confidence 466678875 3555666666676665 789999999999854
No 155
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=63.13 E-value=10 Score=38.47 Aligned_cols=72 Identities=13% Similarity=0.204 Sum_probs=36.6
Q ss_pred eEEEecCCCC-----HHHHHHHHHHhC-CCCCCCCcceeeEEeeccccCCCCChH-------------HHHHHHHHhhhh
Q 004569 446 IKIFGDLHGQ-----FGDLMRLFDEYG-SPSTAGDIAYIDYLFLGDYVDRGQHSL-------------ETITLLLALKVE 506 (744)
Q Consensus 446 i~VvGDIHG~-----~~dL~~il~~~g-~p~~~~~~~~~~~vFLGDyVDRG~~sl-------------Evl~lL~~LK~~ 506 (744)
|++++|+|=. ++.|.++|..+. ..... .+|++|+++|.-.... +.+..+..+...
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~------~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPD------VLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLES 74 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTEC------EEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCC
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCc------EEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhh
Confidence 5788888754 555666666554 22222 7999999999632221 111111111111
Q ss_pred C--CCCeEEEecCccccch
Q 004569 507 Y--PNNVHLIRGNHEAADI 523 (744)
Q Consensus 507 ~--P~~v~lLRGNHE~~~l 523 (744)
. --+|+++.|+||....
T Consensus 75 i~~~~~vvlvPg~~D~~~~ 93 (209)
T PF04042_consen 75 ILPSTQVVLVPGPNDPTSS 93 (209)
T ss_dssp CHCCSEEEEE--TTCTT-S
T ss_pred cccccEEEEeCCCcccccc
Confidence 1 2589999999997554
No 156
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.97 E-value=29 Score=33.95 Aligned_cols=102 Identities=25% Similarity=0.350 Sum_probs=69.0
Q ss_pred eEEEecCCC--CHHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccccch
Q 004569 446 IKIFGDLHG--QFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 523 (744)
Q Consensus 446 i~VvGDIHG--~~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~l 523 (744)
+.++||+|= .-.+|-.-|+++=.|..-. +++++|++. |-|++.+|..+. ..++++||--|..
T Consensus 3 vL~lgD~HiP~Ra~~Lp~KFkklLvPgki~-----hilctGNlc-----s~e~~dylk~l~----~dvhiVrGeFD~~-- 66 (183)
T KOG3325|consen 3 VLVLGDLHIPHRANDLPAKFKKLLVPGKIQ-----HILCTGNLC-----SKESYDYLKTLS----SDVHIVRGEFDEN-- 66 (183)
T ss_pred EEEeccccCCccccccCHHHHhccCCCcee-----EEEEeCCcc-----hHHHHHHHHhhC----CCcEEEecccCcc--
Confidence 578999994 3455655666655554432 799999965 678999998875 7999999987652
Q ss_pred hhhcCChHHHHHHhCcccchhhhhhhhhHhhccceeeEEe-CcEEEecCCCCCCCCChhhhhhccCCcc
Q 004569 524 NALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIE-KKIICMHGGIGRSINHVEQIENLQRPIT 591 (744)
Q Consensus 524 ~~~~gf~~E~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~-~~il~vHGGi~~~~~~l~~I~~i~Rp~~ 591 (744)
.+|++.. ...++ -+|-||||-.--.+.+.+.+.-+.|-+.
T Consensus 67 -----------~~yP~~k-----------------vvtvGqfkIG~chGhqViP~gd~~sL~~LaRqld 107 (183)
T KOG3325|consen 67 -----------LKYPENK-----------------VVTVGQFKIGLCHGHQVIPWGDPESLALLARQLD 107 (183)
T ss_pred -----------ccCCccc-----------------eEEeccEEEEeecCcEeecCCCHHHHHHHHHhcC
Confidence 2343320 01122 3899999976555677788888888554
No 157
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=61.56 E-value=55 Score=34.70 Aligned_cols=32 Identities=25% Similarity=0.514 Sum_probs=26.2
Q ss_pred EEEEcCCCCCCCCceeEEEEE-CCEEEEEeccC
Q 004569 68 EWAIAPGVSPSPRYQHAAVFV-NARLHVSGGAL 99 (744)
Q Consensus 68 ~w~~~~g~~P~pR~~Hsaa~~-g~~LyV~GG~~ 99 (744)
.|.+.+..|-.+|+..+++.+ +++++|+||..
T Consensus 106 ~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 106 DWTESPNDMQSGRWYPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred CceECcccccCCCccccceECCCCCEEEEeCcC
Confidence 577666569999999988766 68999999986
No 158
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=60.65 E-value=18 Score=38.26 Aligned_cols=57 Identities=23% Similarity=0.204 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCC-----hHHHHHHHHHhhhhCCCCeEEEecCccc
Q 004569 454 GQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQH-----SLETITLLLALKVEYPNNVHLIRGNHEA 520 (744)
Q Consensus 454 G~~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~-----slEvl~lL~~LK~~~P~~v~lLRGNHE~ 520 (744)
|-+..+..++++......+ .-+|..||+++..+. ...++..|-.+. --+...||||.
T Consensus 21 gG~~rl~~~i~~~r~~~~~-----~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l~-----~d~~~~GNHef 82 (257)
T cd07406 21 GGAARFATLRKQLRKENPN-----TLVLFSGDVLSPSLLSTATKGKQMVPVLNALG-----VDLACFGNHEF 82 (257)
T ss_pred CCHHHHHHHHHHHHhcCCC-----EEEEECCCccCCccchhhcCCccHHHHHHhcC-----CcEEeeccccc
Confidence 3466677777765432111 146779999987753 234555555543 23567899996
No 159
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=57.86 E-value=24 Score=37.82 Aligned_cols=68 Identities=21% Similarity=0.189 Sum_probs=46.3
Q ss_pred CceEEEecCCCC--HHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCC-CChHHHHHHHHHhhhhCCCCeEEEecCccc
Q 004569 444 APIKIFGDLHGQ--FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRG-QHSLETITLLLALKVEYPNNVHLIRGNHEA 520 (744)
Q Consensus 444 ~pi~VvGDIHG~--~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG-~~slEvl~lL~~LK~~~P~~v~lLRGNHE~ 520 (744)
++|.++|||=|. ...|...|..+......+ -+|..||...-| --+-+++..|+.+-+ .++.+ |||+.
T Consensus 1 m~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D-----~vIaNgEn~~gG~Gi~~~~~~~L~~~Gv----DviT~-GNH~~ 70 (266)
T TIGR00282 1 IKFLFIGDVYGKAGRKIVKNNLPQLKSKYQAD-----LVIANGENTTHGKGLTLKIYEFLKQSGV----NYITM-GNHTW 70 (266)
T ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHhCCCC-----EEEEcCcccCCCCCCCHHHHHHHHhcCC----CEEEc-cchhc
Confidence 468999999999 566666666654322220 355589999766 456788888887643 45555 99997
Q ss_pred c
Q 004569 521 A 521 (744)
Q Consensus 521 ~ 521 (744)
-
T Consensus 71 D 71 (266)
T TIGR00282 71 F 71 (266)
T ss_pred c
Confidence 4
No 160
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=54.94 E-value=8.9 Score=43.54 Aligned_cols=40 Identities=25% Similarity=0.407 Sum_probs=34.6
Q ss_pred eEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccccch
Q 004569 479 DYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 523 (744)
Q Consensus 479 ~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~l 523 (744)
++-.+||+-||||++--++.-|..+ ..+-+-.||||-.++
T Consensus 193 hLHiVGDIyDRGP~pd~Imd~L~~y-----hsvDiQWGNHDilWm 232 (648)
T COG3855 193 HLHIVGDIYDRGPYPDKIMDTLINY-----HSVDIQWGNHDILWM 232 (648)
T ss_pred heeeecccccCCCCchHHHHHHhhc-----ccccccccCcceEEe
Confidence 5778999999999999999998876 478888999997654
No 161
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=53.23 E-value=32 Score=38.02 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=28.6
Q ss_pred eEEeeccccCCC--CChHHHHHHHHHhhhhCCCCeEEEecCccccc
Q 004569 479 DYLFLGDYVDRG--QHSLETITLLLALKVEYPNNVHLIRGNHEAAD 522 (744)
Q Consensus 479 ~~vFLGDyVDRG--~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~ 522 (744)
-+||+||.|+.- .+...++...++=.+.+.=-...+.||||...
T Consensus 103 lVVfTGD~i~g~~t~Da~~sl~kAvaP~I~~~IPwA~~lGNHDdes 148 (379)
T KOG1432|consen 103 LVVFTGDNIFGHSTQDAATSLMKAVAPAIDRKIPWAAVLGNHDDES 148 (379)
T ss_pred EEEEeCCcccccccHhHHHHHHHHhhhHhhcCCCeEEEeccccccc
Confidence 589999999872 13344444444444444445678999999854
No 162
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.82 E-value=33 Score=39.21 Aligned_cols=71 Identities=17% Similarity=0.316 Sum_probs=52.8
Q ss_pred cCceEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCc
Q 004569 443 KAPIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNH 518 (744)
Q Consensus 443 ~~pi~VvGDIHG~~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNH 518 (744)
+++|.||||.-|.+..|.+-.+...-.... ..-++++|++.+--..+-|++.+.-.. ...|--++++-+|-
T Consensus 5 ~~kILv~Gd~~Gr~~eli~rI~~v~Kk~Gp----Fd~liCvGnfF~~~~~~~e~~~ykng~-~~vPiptY~~g~~~ 75 (528)
T KOG2476|consen 5 DAKILVCGDVEGRFDELIKRIQKVNKKSGP----FDLLICVGNFFGHDTQNAEVEKYKNGT-KKVPIPTYFLGDNA 75 (528)
T ss_pred CceEEEEcCccccHHHHHHHHHHHhhcCCC----ceEEEEecccCCCccchhHHHHHhcCC-ccCceeEEEecCCC
Confidence 478999999999999998877665432221 115788999999877788887776654 46777788877765
No 163
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=51.10 E-value=23 Score=41.43 Aligned_cols=71 Identities=28% Similarity=0.298 Sum_probs=41.5
Q ss_pred cCceEEEecCCCCHH------------HHHHHHHHhCCCCCCCCcceeeEEeeccccCCCC------ChHHHHHHHHHhh
Q 004569 443 KAPIKIFGDLHGQFG------------DLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQ------HSLETITLLLALK 504 (744)
Q Consensus 443 ~~pi~VvGDIHG~~~------------dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~------~slEvl~lL~~LK 504 (744)
+-.|+-..|+||++. .+.++.........+.. ..-+|=.||+++..+ .....+.+|-.++
T Consensus 26 ~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~--~~llld~GD~~~G~~l~~~~~~g~~~~~~mN~m~ 103 (517)
T COG0737 26 KLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENK--NVLLLDAGDLIQGSPLSDYLTKGEPTVDLLNALG 103 (517)
T ss_pred eEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcC--CeEEEeCCcccCCccccccccCCChHHHHHhhcC
Confidence 345888999999998 33333322211111110 113444999999843 3344666666664
Q ss_pred hhCCCCeEEEecCccc
Q 004569 505 VEYPNNVHLIRGNHEA 520 (744)
Q Consensus 505 ~~~P~~v~lLRGNHE~ 520 (744)
-=.+..||||.
T Consensus 104 -----yDa~tiGNHEF 114 (517)
T COG0737 104 -----YDAMTLGNHEF 114 (517)
T ss_pred -----CcEEeeccccc
Confidence 33667799997
No 164
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=48.45 E-value=28 Score=37.61 Aligned_cols=69 Identities=22% Similarity=0.227 Sum_probs=37.1
Q ss_pred ceEEEecCCCCHH-------------HHHHHHHHhCCC-CCCCCcceeeEEeeccccCCCCCh-------HHHHHHHHHh
Q 004569 445 PIKIFGDLHGQFG-------------DLMRLFDEYGSP-STAGDIAYIDYLFLGDYVDRGQHS-------LETITLLLAL 503 (744)
Q Consensus 445 pi~VvGDIHG~~~-------------dL~~il~~~g~p-~~~~~~~~~~~vFLGDyVDRG~~s-------lEvl~lL~~L 503 (744)
.|+-+.|+||++. .+.++.+...-. ...+ ...-+|..||+++.-+.+ .-++.++-.+
T Consensus 7 tILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~--~~~Llld~GD~~qGs~~~~~~~~~g~~~~~~mN~m 84 (282)
T cd07407 7 NFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKG--VDLLLVDTGDLHDGNGLSDASPPPGSYSNPIFRMM 84 (282)
T ss_pred EEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcC--CCEEEEeCCCccCCeeceeeecCCChHHHHHHHhc
Confidence 4788899999864 123333322100 0000 011356699999865432 2234444444
Q ss_pred hhhCCCCeEEEecCccc
Q 004569 504 KVEYPNNVHLIRGNHEA 520 (744)
Q Consensus 504 K~~~P~~v~lLRGNHE~ 520 (744)
+-=.+..||||.
T Consensus 85 -----gyDa~tlGNHEF 96 (282)
T cd07407 85 -----PYDLLTIGNHEL 96 (282)
T ss_pred -----CCcEEeeccccc
Confidence 345678899998
No 165
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=47.47 E-value=28 Score=37.52 Aligned_cols=69 Identities=23% Similarity=0.185 Sum_probs=35.2
Q ss_pred eEEEecCCCCHHH----------HHHHHHHhCCCCCCCCcceeeEEeeccccCCCCC-----hHHHHHHHHHhhhhCCCC
Q 004569 446 IKIFGDLHGQFGD----------LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQH-----SLETITLLLALKVEYPNN 510 (744)
Q Consensus 446 i~VvGDIHG~~~d----------L~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~-----slEvl~lL~~LK~~~P~~ 510 (744)
|+.+.|+||++.. +..+++........ .....-+|-.||++...+. ..-++.+|-++. -.
T Consensus 3 Il~tnD~Hg~l~~~~~~~gG~ar~a~~i~~~r~~~~~-~~~~~l~ld~GD~~~Gs~~~~~~~g~~~~~~~n~~g----~D 77 (285)
T cd07405 3 ILHTNDHHGHFWPNGTGEYGLAAQKTLVDGVRREVAA-QGGYVLLLSGGDINTGVPESDLQDAEPDFRGMNLVG----YD 77 (285)
T ss_pred EEEEcccccccccCCCCCccHHHHHHHHHHHHHHhhc-cCCCEEEEeCCCcCCCchhHHhcCcchHHHHHHhhC----Cc
Confidence 6788999998633 44445443211000 0011135569999843332 223344444443 23
Q ss_pred eEEEecCccc
Q 004569 511 VHLIRGNHEA 520 (744)
Q Consensus 511 v~lLRGNHE~ 520 (744)
+ +..||||.
T Consensus 78 a-~~~GNHEf 86 (285)
T cd07405 78 A-MAVGNHEF 86 (285)
T ss_pred E-Eeeccccc
Confidence 3 34499996
No 166
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=43.39 E-value=73 Score=34.62 Aligned_cols=76 Identities=16% Similarity=0.275 Sum_probs=48.8
Q ss_pred CceEEEecCCC----CHHHHHHHHHHhC-CCCCCCCcceeeEEeeccccCCC----CChH----HHHHHHHH-hhhhCC-
Q 004569 444 APIKIFGDLHG----QFGDLMRLFDEYG-SPSTAGDIAYIDYLFLGDYVDRG----QHSL----ETITLLLA-LKVEYP- 508 (744)
Q Consensus 444 ~pi~VvGDIHG----~~~dL~~il~~~g-~p~~~~~~~~~~~vFLGDyVDRG----~~sl----Evl~lL~~-LK~~~P- 508 (744)
..++|+||+|= .++.|.++|..+. ..+.+ . ...-+||+|+++-+. ..+. |-..-|.. +..+||
T Consensus 28 ~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~-~-~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~fp~ 105 (291)
T PTZ00235 28 HNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPEN-E-LPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKFKL 105 (291)
T ss_pred eEEEEEEeeccCCHHHHHHHHHHHHHhhccCccc-C-CCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhChH
Confidence 46899999994 4777888888773 21111 1 123699999999763 2222 33444443 233455
Q ss_pred ----CCeEEEecCcccc
Q 004569 509 ----NNVHLIRGNHEAA 521 (744)
Q Consensus 509 ----~~v~lLRGNHE~~ 521 (744)
.++++|.|-.|-.
T Consensus 106 L~~~s~fVFVPGpnDPw 122 (291)
T PTZ00235 106 ILEHCYLIFIPGINDPC 122 (291)
T ss_pred HHhcCeEEEECCCCCCC
Confidence 7899999999963
No 167
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=43.18 E-value=34 Score=44.27 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=16.1
Q ss_pred HHHHHHHHHH-cCCeEEEEccccc
Q 004569 630 PDRVMEFCNN-NDLQLIVRAHECV 652 (744)
Q Consensus 630 ~~~v~~fL~~-n~l~~IIRgHe~v 652 (744)
++++.+..++ -++++||-||+-.
T Consensus 256 en~~~~la~~~~gID~Il~GHsH~ 279 (1163)
T PRK09419 256 EDSVYDLAEKTKGIDAIVAGHQHG 279 (1163)
T ss_pred chHHHHHHHhCCCCcEEEeCCCcc
Confidence 3455567744 5899999999643
No 168
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=42.04 E-value=40 Score=40.76 Aligned_cols=69 Identities=19% Similarity=0.103 Sum_probs=41.7
Q ss_pred ecCceEEEecCCCCHHH----------------HHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChH-----------
Q 004569 442 LKAPIKIFGDLHGQFGD----------------LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSL----------- 494 (744)
Q Consensus 442 l~~pi~VvGDIHG~~~d----------------L~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~sl----------- 494 (744)
+.-.|+-..|+||++.. +..+++...-... .+-+|-.||++...+.+-
T Consensus 24 ~~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~-----n~llvD~GD~~qGsp~~~~~~~~~~~~g~ 98 (649)
T PRK09420 24 VDLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEAK-----NSVLVDNGDLIQGSPLGDYMAAKGLKAGD 98 (649)
T ss_pred ceEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhCC-----CEEEEECCCcCCCchhhhhhhhccccCCC
Confidence 34567889999999743 3334444321111 124667999998665431
Q ss_pred --HHHHHHHHhhhhCCCCeEEEecCccc
Q 004569 495 --ETITLLLALKVEYPNNVHLIRGNHEA 520 (744)
Q Consensus 495 --Evl~lL~~LK~~~P~~v~lLRGNHE~ 520 (744)
-++..+-.| +.=....||||.
T Consensus 99 ~~p~i~amN~l-----gyDa~tlGNHEF 121 (649)
T PRK09420 99 VHPVYKAMNTL-----DYDVGNLGNHEF 121 (649)
T ss_pred cchHHHHHHhc-----CCcEEeccchhh
Confidence 245555555 345677899996
No 169
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=41.25 E-value=38 Score=40.76 Aligned_cols=66 Identities=20% Similarity=0.087 Sum_probs=38.8
Q ss_pred ceEEEecCCCCHHH----------------HHHHHHHhCCCCCCCCcceeeEEeeccccCCCCCh-------------HH
Q 004569 445 PIKIFGDLHGQFGD----------------LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS-------------LE 495 (744)
Q Consensus 445 pi~VvGDIHG~~~d----------------L~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~s-------------lE 495 (744)
.|+-..||||++.. +..+++...-... ..-+|-.||.+...+.+ .-
T Consensus 4 ~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~-----n~lllD~GD~~qGsp~~~~~~~~~~~~~~~~p 78 (626)
T TIGR01390 4 RIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAEVK-----NSVLVDNGDLIQGSPLGDYMAAQGLKAGQMHP 78 (626)
T ss_pred EEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhhCC-----CeEEEECCCcCCCccchhhhhhccccCCCcCh
Confidence 47788999999753 3334444321111 12466699999865433 12
Q ss_pred HHHHHHHhhhhCCCCeEEEecCccc
Q 004569 496 TITLLLALKVEYPNNVHLIRGNHEA 520 (744)
Q Consensus 496 vl~lL~~LK~~~P~~v~lLRGNHE~ 520 (744)
++.+|-.| +-=....||||.
T Consensus 79 ~~~~mN~l-----gyDa~tlGNHEF 98 (626)
T TIGR01390 79 VYKAMNLL-----KYDVGNLGNHEF 98 (626)
T ss_pred HHHHHhhc-----CccEEecccccc
Confidence 44444444 234677899996
No 170
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=40.76 E-value=48 Score=36.31 Aligned_cols=69 Identities=22% Similarity=0.147 Sum_probs=38.9
Q ss_pred eEEEecCCCCHH------HHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCC-------------hHHHHHHHHHhhhh
Q 004569 446 IKIFGDLHGQFG------DLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQH-------------SLETITLLLALKVE 506 (744)
Q Consensus 446 i~VvGDIHG~~~------dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~-------------slEvl~lL~~LK~~ 506 (744)
|+-+.|+||++. .+..+++...-..... ....-+|..||.+.-++. ..-++.+|-++.
T Consensus 3 IlhtnD~Hg~~~~~gg~ar~a~~i~~~r~~~~~~-~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i~~mN~~g-- 79 (313)
T cd08162 3 LLHTSDGESGLLAEDDAPNFSALVNALKDEAAAE-YDNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADILILNALG-- 79 (313)
T ss_pred EEEecccccCccccCCHHHHHHHHHHHHHhhhcc-CCCeEEEecCccccCchhhhhhccccccccCChHHHHHHhccC--
Confidence 567889999963 3333444432110000 001246779999876543 334455555553
Q ss_pred CCCCeEEEecCccc
Q 004569 507 YPNNVHLIRGNHEA 520 (744)
Q Consensus 507 ~P~~v~lLRGNHE~ 520 (744)
-=.+..||||.
T Consensus 80 ---~Da~tlGNHEF 90 (313)
T cd08162 80 ---VQAIALGNHEF 90 (313)
T ss_pred ---CcEEecccccc
Confidence 34677899996
No 171
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=39.46 E-value=3.8e+02 Score=31.66 Aligned_cols=77 Identities=14% Similarity=0.314 Sum_probs=42.6
Q ss_pred ceeeeeccCCEEEEEEeccCCCCccceeEEEEecCCCCceEEEEcCCCC----C---CCCceeEEEEECCEEEEEeccCC
Q 004569 28 VYCCNACAIDVIFCCLFWLLWFLQPLASAYGLAKHRDGRWEWAIAPGVS----P---SPRYQHAAVFVNARLHVSGGALG 100 (744)
Q Consensus 28 ~~~~~~~~~~~ifgg~gg~~~~~~~l~D~~~l~~~~~~~W~w~~~~g~~----P---~pR~~Hsaa~~g~~LyV~GG~~~ 100 (744)
..++.....+.||.+. .. +.++.|+.. +|+=.|....... + ......+.++.+++||+... ++
T Consensus 61 ~~stPvv~~g~vyv~s----~~----g~v~AlDa~-TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-dg 130 (527)
T TIGR03075 61 QESQPLVVDGVMYVTT----SY----SRVYALDAK-TGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-DA 130 (527)
T ss_pred cccCCEEECCEEEEEC----CC----CcEEEEECC-CCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-CC
Confidence 3455566677888861 11 247777754 5665554432110 0 00112345677888887432 11
Q ss_pred CCCccCCCceEEEEECCCCc--EEe
Q 004569 101 GGRMVEDSSSVAVLDTAAGV--WCD 123 (744)
Q Consensus 101 ~~~~~~~~~sv~~yD~~t~~--W~~ 123 (744)
.+.++|.++++ |..
T Consensus 131 ---------~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 131 ---------RLVALDAKTGKVVWSK 146 (527)
T ss_pred ---------EEEEEECCCCCEEeec
Confidence 28999988775 764
No 172
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=37.55 E-value=75 Score=35.22 Aligned_cols=53 Identities=23% Similarity=0.409 Sum_probs=34.3
Q ss_pred CCCceEEEEcCCCCCCCCce-------eEEEEE-CCEEEEE-eccCCCCCccCCCceEEEEECCCCcEEeCC
Q 004569 63 RDGRWEWAIAPGVSPSPRYQ-------HAAVFV-NARLHVS-GGALGGGRMVEDSSSVAVLDTAAGVWCDTK 125 (744)
Q Consensus 63 ~~~~W~w~~~~g~~P~pR~~-------Hsaa~~-g~~LyV~-GG~~~~~~~~~~~~sv~~yD~~t~~W~~~~ 125 (744)
....|.|...|. +|-.+.. .+-+++ |..|||. -|.. ...+.||+++.+|....
T Consensus 154 ~~~~w~W~~LP~-PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~---------~GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 154 PEESWSWRSLPP-PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR---------WGTYSFDTESHEWRKHG 215 (342)
T ss_pred CCCcceEEcCCC-CCccccCCcccceEEEEEEecCCeEEEEecCCc---------eEEEEEEcCCcceeecc
Confidence 456799999873 4433322 344555 7778884 2321 12789999999999753
No 173
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=36.38 E-value=91 Score=33.23 Aligned_cols=66 Identities=23% Similarity=0.273 Sum_probs=41.8
Q ss_pred ceEEEecCCCCHH--HHHHHHHHhCCCCCCCCcceeeEEeeccccCCC-CChHHHHHHHHHhhhhCCCCeEEEecCccc
Q 004569 445 PIKIFGDLHGQFG--DLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRG-QHSLETITLLLALKVEYPNNVHLIRGNHEA 520 (744)
Q Consensus 445 pi~VvGDIHG~~~--dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG-~~slEvl~lL~~LK~~~P~~v~lLRGNHE~ 520 (744)
+|.++|||=|... .+...|..+...... + -++-.||..--| .-+-++...|..+.. .++.+ ||||.
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~-D----~vi~NgEn~~gg~gl~~~~~~~L~~~G~----D~iTl-GNH~f 69 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKI-D----FVIANGENAAGGKGITPKIAKELLSAGV----DVITM-GNHTW 69 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCC-C----EEEECCccccCCCCCCHHHHHHHHhcCC----CEEEe-ccccc
Confidence 4789999999853 345555544321111 0 244479998766 367788888888753 34444 99986
No 174
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=34.92 E-value=5.1e+02 Score=28.08 Aligned_cols=40 Identities=25% Similarity=0.357 Sum_probs=25.7
Q ss_pred EEEEE-CCEEEEEeccCCCCCccCCCceEEEEECCCCcEEeCCC
Q 004569 84 AAVFV-NARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKS 126 (744)
Q Consensus 84 saa~~-g~~LyV~GG~~~~~~~~~~~~sv~~yD~~t~~W~~~~~ 126 (744)
+..+. ++.|||.|-.+..+. ....+..||..+.+|..+..
T Consensus 41 ~l~~~~~~~Llv~G~ft~~~~---~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 41 DLQWASNNQLLVGGNFTLNGT---NSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred EEEEecCCEEEEEEeeEECCC---CceeEEEEecCCCeeeecCC
Confidence 44444 677777775433221 12348899999999987665
No 175
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=31.77 E-value=2.2e+02 Score=29.01 Aligned_cols=96 Identities=11% Similarity=0.064 Sum_probs=53.3
Q ss_pred CCceEEEEcCCCCCCCCceeEEEEECCEEEEEeccCCCCCccCCCceEEEEECCCCcEEe-CCCCCCCCCCCCCCcccCC
Q 004569 64 DGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCD-TKSVVTSPRTGRYSADAAG 142 (744)
Q Consensus 64 ~~~W~w~~~~g~~P~pR~~Hsaa~~g~~LyV~GG~~~~~~~~~~~~sv~~yD~~t~~W~~-~~~~~~~~R~g~~~~~~~~ 142 (744)
.+.|+-+... ++........+++++.||-+.-.... . . ...|..||..+.+|.. ++. |..+..
T Consensus 79 ~~~Wr~~~~~--~~~~~~~~~~v~~~G~lyw~~~~~~~-~-~--~~~IvsFDl~~E~f~~~i~~--P~~~~~-------- 142 (230)
T TIGR01640 79 SNSWRTIECS--PPHHPLKSRGVCINGVLYYLAYTLKT-N-P--DYFIVSFDVSSERFKEFIPL--PCGNSD-------- 142 (230)
T ss_pred CCCccccccC--CCCccccCCeEEECCEEEEEEEECCC-C-C--cEEEEEEEcccceEeeeeec--Cccccc--------
Confidence 4577776632 22112222377889999888743221 1 1 1148899999999995 432 221110
Q ss_pred CCccccccccccEEEEEECCeEEEEccccCCccccccccccc
Q 004569 143 GDAAVELTRRCRHAAAAVGDLIFIYGGLRGGVLLDDLLVAED 184 (744)
Q Consensus 143 ~d~~~~~~~R~~Hsa~v~~~~IYV~GG~~g~~~l~dv~~~D~ 184 (744)
.......+.++|+|.+........ .-++|+++.
T Consensus 143 --------~~~~~~L~~~~G~L~~v~~~~~~~-~~~IWvl~d 175 (230)
T TIGR01640 143 --------SVDYLSLINYKGKLAVLKQKKDTN-NFDLWVLND 175 (230)
T ss_pred --------cccceEEEEECCEEEEEEecCCCC-cEEEEEECC
Confidence 112245677889988876543211 136777763
No 176
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=31.54 E-value=1e+02 Score=36.62 Aligned_cols=37 Identities=24% Similarity=0.102 Sum_probs=23.8
Q ss_pred eEEeeccccCCCCCh-----HHHHHHHHHhhhhCCCCeEEEecCccc
Q 004569 479 DYLFLGDYVDRGQHS-----LETITLLLALKVEYPNNVHLIRGNHEA 520 (744)
Q Consensus 479 ~~vFLGDyVDRG~~s-----lEvl~lL~~LK~~~P~~v~lLRGNHE~ 520 (744)
-+|.-||.+...+.+ ...+.+|-++ +--.+..||||.
T Consensus 52 l~ldaGD~~~gs~~~~~~~g~~~i~~~N~~-----g~Da~~lGNHEF 93 (550)
T TIGR01530 52 LVLHAGDAIIGTLYFTLFGGRADAALMNAA-----GFDFFTLGNHEF 93 (550)
T ss_pred EEEECCCCCCCccchhhcCCHHHHHHHhcc-----CCCEEEeccccc
Confidence 467799999765432 2334444444 345778899996
No 177
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=30.99 E-value=77 Score=39.38 Aligned_cols=68 Identities=22% Similarity=0.132 Sum_probs=39.8
Q ss_pred cCceEEEecCCCCHHH----------------HHHHHHHhCCCCCCCCcceeeEEeeccccCCCCCh-------------
Q 004569 443 KAPIKIFGDLHGQFGD----------------LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS------------- 493 (744)
Q Consensus 443 ~~pi~VvGDIHG~~~d----------------L~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~s------------- 493 (744)
+-.|+-..|+||++.. +..+++...-... ..-+|..||++..-+.+
T Consensus 115 ~LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~~-----NtLllD~GD~iQGSpl~~~~a~~~~~~~g~ 189 (814)
T PRK11907 115 DVRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKENP-----NVVLVDNGDTIQGTPLGTYKAIVDPVEEGE 189 (814)
T ss_pred EEEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhCC-----CEEEEecCCCCCCCcccchhhhccccccCc
Confidence 3457889999999643 2223333321111 12466799999764432
Q ss_pred -HHHHHHHHHhhhhCCCCeEEEecCccc
Q 004569 494 -LETITLLLALKVEYPNNVHLIRGNHEA 520 (744)
Q Consensus 494 -lEvl~lL~~LK~~~P~~v~lLRGNHE~ 520 (744)
.-++.+|-.| +.-.+..||||.
T Consensus 190 ~~P~i~amN~L-----GyDA~tLGNHEF 212 (814)
T PRK11907 190 QHPMYAALEAL-----GFDAGTLGNHEF 212 (814)
T ss_pred chHHHHHHhcc-----CCCEEEechhhc
Confidence 1255555555 344677899996
No 178
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=29.93 E-value=4.4e+02 Score=26.76 Aligned_cols=58 Identities=3% Similarity=-0.036 Sum_probs=36.4
Q ss_pred eEEEEECCCCcEEeCCCCCCCCCCCCCCcccCCCCccccccccccEEEEEECCeEEEEccccCCcccccccccccccc
Q 004569 110 SVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRGGVLLDDLLVAEDLAA 187 (744)
Q Consensus 110 sv~~yD~~t~~W~~~~~~~~~~R~g~~~~~~~~~d~~~~~~~R~~Hsa~v~~~~IYV~GG~~g~~~l~dv~~~D~~~~ 187 (744)
.+++|+..++.|+.+...++. .. ..+. .+.++|.||-..-.........+..||...-
T Consensus 71 ~~~Vys~~~~~Wr~~~~~~~~--~~-----------------~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E 128 (230)
T TIGR01640 71 EHQVYTLGSNSWRTIECSPPH--HP-----------------LKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSE 128 (230)
T ss_pred cEEEEEeCCCCccccccCCCC--cc-----------------ccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccc
Confidence 489999999999987643211 01 1122 6788999998865432222225888887753
No 179
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=28.33 E-value=4.8e+02 Score=28.99 Aligned_cols=74 Identities=15% Similarity=0.253 Sum_probs=40.5
Q ss_pred eeeccCCEEEEEEeccCCCCccceeEEEEecCCCCceEEEEcCCC----CC---CCCceeEEEEECCEEEEEeccCCCCC
Q 004569 31 CNACAIDVIFCCLFWLLWFLQPLASAYGLAKHRDGRWEWAIAPGV----SP---SPRYQHAAVFVNARLHVSGGALGGGR 103 (744)
Q Consensus 31 ~~~~~~~~ifgg~gg~~~~~~~l~D~~~l~~~~~~~W~w~~~~g~----~P---~pR~~Hsaa~~g~~LyV~GG~~~~~~ 103 (744)
......+.+|.+. .. ..++.|+.. +|+=.|...... .+ .++..-+.++.++++||.+. .+
T Consensus 64 sPvv~~~~vy~~~----~~----g~l~ald~~-tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~-~g--- 130 (394)
T PRK11138 64 HPAVAYNKVYAAD----RA----GLVKALDAD-TGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE-KG--- 130 (394)
T ss_pred ccEEECCEEEEEC----CC----CeEEEEECC-CCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC-CC---
Confidence 3345567788861 11 256667654 566555543211 00 11222345677888887432 21
Q ss_pred ccCCCceEEEEECCCC--cEEe
Q 004569 104 MVEDSSSVAVLDTAAG--VWCD 123 (744)
Q Consensus 104 ~~~~~~sv~~yD~~t~--~W~~ 123 (744)
.++++|.+++ .|+.
T Consensus 131 ------~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 131 ------QVYALNAEDGEVAWQT 146 (394)
T ss_pred ------EEEEEECCCCCCcccc
Confidence 2899998776 4875
No 180
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=26.53 E-value=1.3e+02 Score=22.04 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=16.0
Q ss_pred ceeEEEEECCEEEEEeccCCCCCccCCCceEEEEECCC
Q 004569 81 YQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAA 118 (744)
Q Consensus 81 ~~Hsaa~~g~~LyV~GG~~~~~~~~~~~~sv~~yD~~t 118 (744)
...+.++.++++||.+.. + .++++|.++
T Consensus 13 ~~~~~~v~~g~vyv~~~d-g---------~l~ald~~t 40 (40)
T PF13570_consen 13 IWSSPAVAGGRVYVGTGD-G---------NLYALDAAT 40 (40)
T ss_dssp --S--EECTSEEEEE-TT-S---------EEEEEETT-
T ss_pred cCcCCEEECCEEEEEcCC-C---------EEEEEeCCC
Confidence 334557788988887652 1 289999864
No 181
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=26.23 E-value=75 Score=36.58 Aligned_cols=63 Identities=21% Similarity=0.217 Sum_probs=0.0
Q ss_pred ceEEEecCCCCHHHHHHHHHHhCCCC-CCCCcceeeEEeeccccCCCCCh-------HHHHHHHHHhhhhCCCCeEEEec
Q 004569 445 PIKIFGDLHGQFGDLMRLFDEYGSPS-TAGDIAYIDYLFLGDYVDRGQHS-------LETITLLLALKVEYPNNVHLIRG 516 (744)
Q Consensus 445 pi~VvGDIHG~~~dL~~il~~~g~p~-~~~~~~~~~~vFLGDyVDRG~~s-------lEvl~lL~~LK~~~P~~v~lLRG 516 (744)
.+.|+||+ |+...-...+....... .+ -+|++||+----.++ ...++-+.+. --..+.-|
T Consensus 149 ~~~i~GDl-G~~~~~~s~~~~~~~~~k~d------~vlhiGDlsYa~~~~n~~wD~f~r~vEp~As~-----vPymv~~G 216 (452)
T KOG1378|consen 149 RAAIFGDM-GCTEPYTSTLRNQEENLKPD------AVLHIGDLSYAMGYSNWQWDEFGRQVEPIASY-----VPYMVCSG 216 (452)
T ss_pred eEEEEccc-cccccccchHhHHhcccCCc------EEEEecchhhcCCCCccchHHHHhhhhhhhcc-----CceEEecc
Q ss_pred Ccc
Q 004569 517 NHE 519 (744)
Q Consensus 517 NHE 519 (744)
|||
T Consensus 217 NHE 219 (452)
T KOG1378|consen 217 NHE 219 (452)
T ss_pred ccc
No 182
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=25.49 E-value=1e+02 Score=36.87 Aligned_cols=41 Identities=24% Similarity=0.416 Sum_probs=36.2
Q ss_pred eEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccccchh
Q 004569 479 DYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADIN 524 (744)
Q Consensus 479 ~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~l~ 524 (744)
++-.+||+.||||.+--++..|+.. .+|=+-.||||-.++.
T Consensus 187 hLHIvGDIyDRGp~pd~ImD~Lm~~-----hsvDIQWGNHDIlWMG 227 (640)
T PF06874_consen 187 HLHIVGDIYDRGPRPDKIMDRLMNY-----HSVDIQWGNHDILWMG 227 (640)
T ss_pred heeecccccCCCCChhHHHHHHhcC-----CCccccccchHHHHHH
Confidence 6889999999999999999999976 5899999999976553
No 183
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=23.69 E-value=2.8e+02 Score=28.44 Aligned_cols=91 Identities=22% Similarity=0.299 Sum_probs=63.2
Q ss_pred eeEEeeccccCCCCChHHHHHHHHHhhhhCCCCeEEEecCccccchhhhcCChH---HHHH---------HhCcccchhh
Q 004569 478 IDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRI---ECIE---------RMGERDGIWA 545 (744)
Q Consensus 478 ~~~vFLGDyVDRG~~slEvl~lL~~LK~~~P~~v~lLRGNHE~~~l~~~~gf~~---E~~~---------~~g~~~~~~~ 545 (744)
..+|||| -|-+--|.+.||-+|+.+|-.+.++ .|+-|.|..+....|.. +|.. .-|...-..+
T Consensus 40 ~~lVvlG----SGGHT~EMlrLl~~l~~~y~~r~yI-~a~tD~mS~~k~~~F~~~~a~~~a~~~~ipRsReVgQS~ltSv 114 (211)
T KOG3339|consen 40 STLVVLG----SGGHTGEMLRLLEALQDLYSPRSYI-AADTDEMSEQKARSFELSLAHCKAKNYEIPRSREVGQSWLTSV 114 (211)
T ss_pred eEEEEEc----CCCcHHHHHHHHHHHHhhcCceEEE-EecCchhhHHHHHhhhccccccchhheecchhhhhhhhhhhhH
Confidence 3699998 5889999999999999999655555 89999998876555432 1111 1122222346
Q ss_pred hhhhhhHhhccceeeEEeCcEEEecC-CC
Q 004569 546 WHRINRLFNWLPLAALIEKKIICMHG-GI 573 (744)
Q Consensus 546 ~~~~~~~f~~LPlaa~i~~~il~vHG-Gi 573 (744)
|..+..+.-.+++...+--+++.+-| |-
T Consensus 115 ~Tti~all~s~~lv~RirPdlil~NGPGT 143 (211)
T KOG3339|consen 115 FTTIWALLQSFVLVWRIRPDLILCNGPGT 143 (211)
T ss_pred HHHHHHHHHHheEEEecCCCEEEECCCCc
Confidence 67777887888888777666777766 44
No 184
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=23.57 E-value=1.1e+02 Score=33.13 Aligned_cols=62 Identities=29% Similarity=0.327 Sum_probs=39.2
Q ss_pred CceEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChHHHHH---HHHHhhhhCCCCeEEEecCccc
Q 004569 444 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETIT---LLLALKVEYPNNVHLIRGNHEA 520 (744)
Q Consensus 444 ~pi~VvGDIHG~~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~slEvl~---lL~~LK~~~P~~v~lLRGNHE~ 520 (744)
.+++.++|.|....+.. ..|+.+ -++-+||+-.-|. +-||+. .+-+|.-+ +=+.|+||||.
T Consensus 62 ~r~VcisdtH~~~~~i~------~~p~gD------vlihagdfT~~g~-~~ev~~fn~~~gslph~---yKIVIaGNHEL 125 (305)
T KOG3947|consen 62 ARFVCISDTHELTFDIN------DIPDGD------VLIHAGDFTNLGL-PEEVIKFNEWLGSLPHE---YKIVIAGNHEL 125 (305)
T ss_pred eEEEEecCcccccCccc------cCCCCc------eEEeccCCccccC-HHHHHhhhHHhccCcce---eeEEEeeccce
Confidence 45899999998766543 234433 4577999887654 334443 23333322 34789999998
Q ss_pred c
Q 004569 521 A 521 (744)
Q Consensus 521 ~ 521 (744)
-
T Consensus 126 t 126 (305)
T KOG3947|consen 126 T 126 (305)
T ss_pred e
Confidence 4
No 185
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=23.38 E-value=3.4e+02 Score=30.07 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=36.6
Q ss_pred EEEEECCEEEEEeccCCCCCccCCCceEEEEECCCCcEEeCCCCCCCCCCCCCCcccCCCCccccccccccEEEEEECCe
Q 004569 84 AAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDL 163 (744)
Q Consensus 84 saa~~g~~LyV~GG~~~~~~~~~~~~sv~~yD~~t~~W~~~~~~~~~~R~g~~~~~~~~~d~~~~~~~R~~Hsa~v~~~~ 163 (744)
.+++.+++|+..++.. . ..+||+++..=...+.+..+ .++ -.++.++++
T Consensus 71 F~al~gskIv~~d~~~-------~---t~vyDt~t~av~~~P~l~~p--------------------k~~-pisv~VG~~ 119 (342)
T PF07893_consen 71 FFALHGSKIVAVDQSG-------R---TLVYDTDTRAVATGPRLHSP--------------------KRC-PISVSVGDK 119 (342)
T ss_pred EEEecCCeEEEEcCCC-------C---eEEEECCCCeEeccCCCCCC--------------------Ccc-eEEEEeCCe
Confidence 3344688988886542 1 77899998865543333211 122 366778999
Q ss_pred EEEEcccc
Q 004569 164 IFIYGGLR 171 (744)
Q Consensus 164 IYV~GG~~ 171 (744)
|||.....
T Consensus 120 LY~m~~~~ 127 (342)
T PF07893_consen 120 LYAMDRSP 127 (342)
T ss_pred EEEeeccC
Confidence 99997753
No 186
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=23.15 E-value=57 Score=35.00 Aligned_cols=39 Identities=26% Similarity=0.494 Sum_probs=26.8
Q ss_pred eEEeeccccCCCCChHHHH-HHHHHhhhhCCCCeEEEecCcccc
Q 004569 479 DYLFLGDYVDRGQHSLETI-TLLLALKVEYPNNVHLIRGNHEAA 521 (744)
Q Consensus 479 ~~vFLGDyVDRG~~slEvl-~lL~~LK~~~P~~v~lLRGNHE~~ 521 (744)
+++|+||+|.+ -..+.+ ..|-.||.+++-.+.+ .|=|..
T Consensus 2 ~ilfiGDi~G~--~Gr~~l~~~L~~lk~~~~~D~vI--aNgEn~ 41 (266)
T TIGR00282 2 KFLFIGDVYGK--AGRKIVKNNLPQLKSKYQADLVI--ANGENT 41 (266)
T ss_pred eEEEEEecCCH--HHHHHHHHHHHHHHHhCCCCEEE--EcCccc
Confidence 79999999954 334433 6777888888755444 466765
No 187
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=23.08 E-value=1.7e+02 Score=31.71 Aligned_cols=57 Identities=11% Similarity=0.137 Sum_probs=34.2
Q ss_pred EEEEECCCCcEEeCCCCCCCCCCCCCCcccCCCCccccccccccEEEEEE-CCeEEEEccccCCc-cccccccccccccc
Q 004569 111 VAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAV-GDLIFIYGGLRGGV-LLDDLLVAEDLAAA 188 (744)
Q Consensus 111 v~~yD~~t~~W~~~~~~~~~~R~g~~~~~~~~~d~~~~~~~R~~Hsa~v~-~~~IYV~GG~~g~~-~l~dv~~~D~~~~~ 188 (744)
+..||+.+.+|........ | -- ++...+ +++|||.|-+.-.. .-..+-.||...-.
T Consensus 18 lC~yd~~~~qW~~~g~~i~----G-----------------~V-~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 18 LCLYDTDNSQWSSPGNGIS----G-----------------TV-TDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred EEEEECCCCEeecCCCCce----E-----------------EE-EEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence 8999999999997654311 1 11 233333 77888877654332 33456667755444
Q ss_pred c
Q 004569 189 E 189 (744)
Q Consensus 189 ~ 189 (744)
|
T Consensus 76 w 76 (281)
T PF12768_consen 76 W 76 (281)
T ss_pred e
Confidence 4
No 188
>PF09637 Med18: Med18 protein; InterPro: IPR019095 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med18 is one subunit of the Mediator complex and a component of the head module that is involved in stimulating basal RNA polymerase II (PolII) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Med8 and Med20 proteins by forming a heterodimer of two-fold symmetry with Med20 and binding the C-terminal alpha-helix region of Med8 across the top of its barrel. This complex creates a multipartite TBP-binding site that can be modulated by transcriptional activators []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2HZM_F 2HZS_H 3RJ1_E 3C0T_A.
Probab=22.96 E-value=94 Score=32.93 Aligned_cols=41 Identities=22% Similarity=0.378 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHcCCeEEEEcccccccceEEecCCeEEEEeccCC
Q 004569 629 GPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATN 672 (744)
Q Consensus 629 g~~~v~~fL~~n~l~~IIRgHe~v~~G~~~~~~~~liTVFSa~n 672 (744)
....+-+||+.+|..+. +|.+..||.|++++-+|+||---.
T Consensus 139 ~~~~~~~fl~~lGy~~~---~Eyv~~G~~F~~g~i~I~l~ri~~ 179 (250)
T PF09637_consen 139 TSGSLLSFLNELGYRFD---YEYVVEGYRFFKGDIVIELFRIFK 179 (250)
T ss_dssp SSSSHHHHHHHTTEEEE---EEEEEEEEEEEECCEEEEEEEEEE
T ss_pred CCCCHHHHHHHcCCceE---EEEEEEEEEEEECCEEEEEEEEEe
Confidence 45668899999997764 899999999999998888876443
No 189
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=22.80 E-value=2.3e+02 Score=33.42 Aligned_cols=52 Identities=19% Similarity=0.169 Sum_probs=37.4
Q ss_pred CceEEEecCCC------------CHHHHHHHHHHhCCCCCCCCcceeeEEeeccccCCCCChHHHHHHHH
Q 004569 444 APIKIFGDLHG------------QFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLL 501 (744)
Q Consensus 444 ~pi~VvGDIHG------------~~~dL~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~slEvl~lL~ 501 (744)
.+|.|-.|+|= .|..|.+||..+.-...+ -+|.=||+++-..-|..+|.-.+
T Consensus 14 irILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VD------miLlGGDLFHeNkPSr~~L~~~i 77 (646)
T KOG2310|consen 14 IRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVD------MILLGGDLFHENKPSRKTLHRCL 77 (646)
T ss_pred eEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCc------EEEecCcccccCCccHHHHHHHH
Confidence 46889999993 467788888877654443 46777999998877776654433
No 190
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=22.27 E-value=77 Score=29.05 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=51.0
Q ss_pred CCCCceeeCHHHHHHHHHHcCCeEEEEcccccccceEEe------cCCeEEEEeccC---CCCCCCCCeEEEEEEcCCc
Q 004569 621 RGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERF------AQGHLITLFSAT---NYCGTANNAGAILVLGRDL 690 (744)
Q Consensus 621 Rg~g~~~Fg~~~v~~fL~~n~l~~IIRgHe~v~~G~~~~------~~~~liTVFSa~---nY~~~~~N~gavl~i~~~~ 690 (744)
|.+|.+.+|.+.+.+-+++...+++|.+-++-+++-+.+ ++-.+++.|+.- .-||. .+.+++.+.+..+
T Consensus 13 ~rAGklv~G~~~v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~~eLg~a~Gk-~~~~~iai~d~g~ 90 (104)
T PRK05583 13 KKAGKLLEGYNKCEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEELGNAIGR-DEIKILGVKDKNM 90 (104)
T ss_pred HHhCCeeecHHHHHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCHHHHHHHhCC-CCeEEEEEeChHH
Confidence 345657899999999999999999999999988875422 345678877753 34564 3477777777654
No 191
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=21.75 E-value=7e+02 Score=27.32 Aligned_cols=70 Identities=19% Similarity=0.226 Sum_probs=38.4
Q ss_pred eeeccCCEEEEEEeccCCCCccceeEEEEecCCCCceEEEEcCCCCCCCCceeEEEEECCEEEEEeccCCCCCccCCCce
Q 004569 31 CNACAIDVIFCCLFWLLWFLQPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSS 110 (744)
Q Consensus 31 ~~~~~~~~ifgg~gg~~~~~~~l~D~~~l~~~~~~~W~w~~~~g~~P~pR~~Hsaa~~g~~LyV~GG~~~~~~~~~~~~s 110 (744)
......+.+|.+. .. ..++.++.. +|+=.|...- +. +..-+.++.++.+||.+. ++ .
T Consensus 60 ~p~v~~~~v~v~~----~~----g~v~a~d~~-tG~~~W~~~~---~~-~~~~~p~v~~~~v~v~~~-~g---------~ 116 (377)
T TIGR03300 60 QPAVAGGKVYAAD----AD----GTVVALDAE-TGKRLWRVDL---DE-RLSGGVGADGGLVFVGTE-KG---------E 116 (377)
T ss_pred ceEEECCEEEEEC----CC----CeEEEEEcc-CCcEeeeecC---CC-CcccceEEcCCEEEEEcC-CC---------E
Confidence 3344566777761 11 357777754 5665555432 11 122234555777776432 21 2
Q ss_pred EEEEECCCCc--EEe
Q 004569 111 VAVLDTAAGV--WCD 123 (744)
Q Consensus 111 v~~yD~~t~~--W~~ 123 (744)
+++||.++++ |..
T Consensus 117 l~ald~~tG~~~W~~ 131 (377)
T TIGR03300 117 VIALDAEDGKELWRA 131 (377)
T ss_pred EEEEECCCCcEeeee
Confidence 8999987664 875
No 192
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=21.00 E-value=4e+02 Score=24.68 Aligned_cols=76 Identities=16% Similarity=0.114 Sum_probs=0.0
Q ss_pred EEECCEEEEEeccCCCCCccCCCceEEEEECCCCcEEeCCCCCCCCCCCCCCcccCCCCccccccccccEEEEEECCeEE
Q 004569 86 VFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIF 165 (744)
Q Consensus 86 a~~g~~LyV~GG~~~~~~~~~~~~sv~~yD~~t~~W~~~~~~~~~~R~g~~~~~~~~~d~~~~~~~R~~Hsa~v~~~~IY 165 (744)
+.++|.||-..-. .......|.+||.++.+|..+... ..+... .++...+.++|+|-
T Consensus 2 icinGvly~~a~~-----~~~~~~~IvsFDv~~E~f~~i~~P-~~~~~~-----------------~~~~~L~~~~G~L~ 58 (129)
T PF08268_consen 2 ICINGVLYWLAWS-----EDSDNNVIVSFDVRSEKFRFIKLP-EDPYSS-----------------DCSSTLIEYKGKLA 58 (129)
T ss_pred EEECcEEEeEEEE-----CCCCCcEEEEEEcCCceEEEEEee-eeeccc-----------------cCccEEEEeCCeEE
Q ss_pred EEccccCCc-cccccccccc
Q 004569 166 IYGGLRGGV-LLDDLLVAED 184 (744)
Q Consensus 166 V~GG~~g~~-~l~dv~~~D~ 184 (744)
++.-..... ..-++|++++
T Consensus 59 ~v~~~~~~~~~~~~iWvLeD 78 (129)
T PF08268_consen 59 LVSYNDQGEPDSIDIWVLED 78 (129)
T ss_pred EEEecCCCCcceEEEEEeec
No 193
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=20.67 E-value=2.5e+02 Score=30.60 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=14.2
Q ss_pred ccccEEEEEEC----CeEEEEccc
Q 004569 151 RRCRHAAAAVG----DLIFIYGGL 170 (744)
Q Consensus 151 ~R~~Hsa~v~~----~~IYV~GG~ 170 (744)
.||+|++.++. ....+|||.
T Consensus 87 aRYGHt~~vV~SrGKta~VlFGGR 110 (337)
T PF03089_consen 87 ARYGHTINVVHSRGKTACVLFGGR 110 (337)
T ss_pred ccccceEEEEEECCcEEEEEECCc
Confidence 46669988773 347888995
No 194
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=20.66 E-value=1.4e+02 Score=35.41 Aligned_cols=72 Identities=24% Similarity=0.158 Sum_probs=36.1
Q ss_pred cCceEEEecCCCCHHH----------HHHHHHHhCCCCCCCCcceeeEEeeccccCCCCCh-----HHHHHHHHHhhhhC
Q 004569 443 KAPIKIFGDLHGQFGD----------LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS-----LETITLLLALKVEY 507 (744)
Q Consensus 443 ~~pi~VvGDIHG~~~d----------L~~il~~~g~p~~~~~~~~~~~vFLGDyVDRG~~s-----lEvl~lL~~LK~~~ 507 (744)
+-.|+-+.|+||++.. +..+++........ ....+-+|.-||++...+.+ .-++.++-.+.
T Consensus 34 ~ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~-~~~~~l~ldaGD~~~Gs~~s~~~~g~~~i~~mN~~g--- 109 (551)
T PRK09558 34 KITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAA-EGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLIG--- 109 (551)
T ss_pred EEEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhc-cCCCEEEEcCCccccceEhhhhcCCchhHHHHhcCC---
Confidence 3457889999999752 22333333210000 00112466789998643322 12334444432
Q ss_pred CCCeEEEecCccc
Q 004569 508 PNNVHLIRGNHEA 520 (744)
Q Consensus 508 P~~v~lLRGNHE~ 520 (744)
-.+.. .||||.
T Consensus 110 -~Da~t-lGNHEF 120 (551)
T PRK09558 110 -YDAMA-VGNHEF 120 (551)
T ss_pred -CCEEc-cccccc
Confidence 23444 499997
Done!