Query 004571
Match_columns 744
No_of_seqs 186 out of 1087
Neff 8.6
Searched_HMMs 29240
Date Tue Mar 26 18:35:09 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004571.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1872-1876//hhsearch_pdb/004571hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ldj_A Cullin homolog 1, CUL-1 1.0 1 1 1125.5 67.6 707 11-744 1-760 (760)
2 2hye_C Cullin-4A, CUL-4A; beta 1.0 1 1 1100.6 67.6 696 7-744 55-759 (759)
3 3dpl_C Cullin-5; ubiquitin, NE 1.0 1 1 622.6 32.0 357 387-744 3-382 (382)
4 4ap2_B Cullin-3, CUL-3; ubiqui 1.0 1 1 535.7 38.3 369 8-403 27-397 (410)
5 4eoz_B Cullin-3, CUL-3; E3 ubi 1.0 1 1 513.7 29.1 355 6-384 8-364 (364)
6 2wzk_A Cullin-5, CUL-5; UBL co 1.0 1 1 495.9 38.0 360 3-385 7-381 (391)
7 4a64_A Cullin-4B, CUL4B, CUL-4 1.0 1 1 486.8 38.5 344 7-385 6-353 (354)
8 1iuy_A Cullin-3 homologue; win 1.0 1 1 173.9 -1.2 82 663-744 11-92 (92)
9 3o2p_E Cell division control p 1.0 1 1 173.1 3.7 82 662-744 7-88 (88)
10 2do7_A Cullin-4B, CUL-4B; heli 1.0 1 1 172.2 1.9 81 662-744 15-95 (101)
No 1
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=1.00 E-value=1 Score=1125.48 Aligned_cols=707 Identities=32% Similarity=0.585 Sum_probs=655.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC-----------------------CCCCCHHHHHH
Q ss_conf 8977999999999999975199999999677999999994652378-----------------------88783699999
Q 004571 11 LEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQK-----------------------PPHDYSQQLYD 67 (744)
Q Consensus 11 f~~~W~~l~~~i~~i~~il~~~~~~~~~~~~y~~lY~~vy~lc~~~-----------------------~~~~~~e~LY~ 67 (744)
||++|+.|++||++| +++ .+++..+||++|++||++|+++ +|..+|++||+
T Consensus 1 f~~~W~~L~~ai~~I---~~~---~~~s~~~~~~LY~~vYn~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~ 74 (760)
T 1ldj_A 1 LDQIWDDLRAGIQQV---YTR---QSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYK 74 (760)
T ss_dssp CHHHHHHHHHHHHHH---TTC---CCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHH
T ss_pred CHHHHHHHHHHHHHH---HHC---CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 950599999999999---866---99987899999999999966875467876543221223555345674111899999
Q ss_pred HHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHCHHHHHCCC------CCCHHHHHHHHHHH
Q ss_conf 999999999983212001002826799999999999899999998852200023220289------87088999999999
Q 004571 68 KYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRS------LPPLNEVGLTCFRD 141 (744)
Q Consensus 68 ~l~~~l~~~l~~~~~~~l~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~------~~~i~~l~l~~f~~ 141 (744)
++++.+..|+...+. .+....++.+|..|..+|.+|+.++.+|+++|+||||+|+++.+ .++|+++|+.+||+
T Consensus 75 ~l~~~l~~~l~~~~~-~~~~~~~e~lL~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~g~~~~~~I~~lgL~~fr~ 153 (760)
T 1ldj_A 75 RLKEFLKNYLTNLLK-DGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRD 153 (760)
T ss_dssp HHHHHHHHHHHHHHH-TTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 999999999999999-8751475899999999999999999998899988678987335534688766199999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC---------CHHCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998732689999999999999569936989899999999982367---------51211998899999999999999999
Q 004571 142 LVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMG---------QMDYYENDFETAMLKDTAAYYSRKAS 212 (744)
Q Consensus 142 ~i~~~l~~~l~~~il~~i~~~R~g~~i~~~~l~~~i~~~~~l~~~---------~~~~Y~~~FE~~~L~~t~~yY~~~~~ 212 (744)
.+|..+.+++.++++.+|+++|+|+.+|+.+++++++||+.+|.+ ++.+|.+.||++||+.|..||+.+++
T Consensus 154 ~vf~~l~~~l~~~lL~lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~~~~~~~~l~vY~~~FE~~fL~~t~~fY~~es~ 233 (760)
T 1ldj_A 154 CLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTREST 233 (760)
T ss_dssp HHTTTTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999868998778999999999998376644321234442443898899999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 88830991079999999999999887100498857799999999999999999997300013553403857889999985
Q 004571 213 NWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRL 292 (744)
Q Consensus 213 ~~l~~~~~~eYl~~v~~~l~~E~~r~~~~l~~~t~~~i~~~l~~~LI~~~~~~ll~~~~~g~~~ll~~~~~~~L~~ly~L 292 (744)
.|+.+.++++|+++|+.++++|.+||..||+++|.+++.++|+++||.+|.+.|. +|+..||++++.++|++||+|
T Consensus 234 ~~l~~~~~~~Yl~~~e~~l~eE~~R~~~yL~~~t~~~l~~~~~~~Li~~~~~~l~----~~~~~ll~~~~~~dL~~my~L 309 (760)
T 1ldj_A 234 EFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFH----TEFQNLLDADKNEDLGRMYNL 309 (760)
T ss_dssp HHHHHSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHH----HHHHHHHHSCCTTHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCCCHHHHHHHHHH
T ss_conf 9987098999999999999999999998568736999999999999999999999----989999973888899999998
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 04689993769999999999999999997898743233210001364158999999999999989999852798468999
Q 004571 293 FSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKS 372 (744)
Q Consensus 293 ~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~li~~~F~~~~~f~~~ 372 (744)
|+++++|++.++..|++||.+.|.+++....+. ...++..||+.|+++|++|+.++..||++|+.|..+
T Consensus 310 ~~rv~~gl~~l~~~~~~~i~~~G~~~v~~~~~~-----------~~~~~~~~V~~ll~l~~k~~~lv~~~F~~d~~f~~a 378 (760)
T 1ldj_A 310 VSRIQDGLGELKKLLETHIHNQGLAAIEKCGEA-----------ALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAA 378 (760)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHTTS-----------GGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 674754389999999999999879999876303-----------345779999999999999999999976786899999
Q ss_pred HHHHHHHHHCCC------CCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999998986089------89888188999999988605899999968899999988665222468478999999999978
Q 004571 373 LKEAFEVFCNKG------VAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARR 446 (744)
Q Consensus 373 l~~af~~~~n~~------~~~~~~~e~La~y~d~~lk~~~~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~L~~R 446 (744)
+++||+.|+|.+ ....++||+||+|||.+||+|. ++.++++++..+++++.+|+|+++||+|+.+|+++||+|
T Consensus 379 l~~af~~~iN~~~~~~~~~~~~~~~E~la~y~D~~Lkk~~-k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakR 457 (760)
T 1ldj_A 379 LDKACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKKSS-KNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKR 457 (760)
T ss_dssp HHHHHHHHHHSSHHHHHHTSTTHHHHHHHHHHHHHHBCCS-SCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 9999999856885434444443328999888699871788-889788899999999999998088899999999999998
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 54999999399999999999750572569599999859997998899999982499999986427888405988999999
Q 004571 447 LLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSF 526 (744)
Q Consensus 447 LL~~~~~~~~~E~~~i~~Lk~~~G~~~t~kl~~Ml~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~~vLt~~~WP~~~~~ 526 (744)
||.+++.+.+.|..||++||.+||.+||++|++||+|+..|++++..|++++.++ ...+++|+|.|||+++||..+..
T Consensus 458 LL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~--~~~~~~~~v~VLs~~~WP~~~~~ 535 (760)
T 1ldj_A 458 LVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNS--EPLDLDFSIQVLSSGSWPFQQSC 535 (760)
T ss_dssp HHTTCBSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--CCCSSEEEEEEEETTTSCCCCCS
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCEEEEECCCCCCCCCCCC
T ss_conf 4579999849999999999988581779999999999999999999999987404--57788705886489988999987
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCEEEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHCC
Q ss_conf 96587658999999999997229970388505864288985762814999872989999994618997679889988099
Q 004571 527 DLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNL 606 (744)
Q Consensus 527 ~~~lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~l~~~~i~~~~~~~~~~l~~s~~Q~~iLllFn~~~~~t~~ei~~~t~i 606 (744)
++.+|++++.+++.|++||..+|+||+|+|.|++|+|+++++|++++++++||++||+||++||+.+.+|+++|++.||+
T Consensus 536 ~~~lP~~l~~~~~~F~~fY~~~~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~~t~~ei~~~t~i 615 (760)
T 1ldj_A 536 TFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQI 615 (760)
T ss_dssp CCCCCGGGHHHHHHHHHHTTTTCTTCCEEECGGGCCCEEEESSSSSCCEEECCHHHHHHHHGGGSSSEEEHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCEEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHCC
T ss_conf 87589999999999999999747997688755656189999988935999975999999998469998379999999790
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCC-----CCCCCCCCCEEEECCCCCCCCCCEECCCCCHH----HHHHHHHHHHHHHHH
Q ss_conf 989999997672201331011388-----98889999907762579998750520599902----356678859984120
Q 004571 607 SDDDVVRLLHSLSCAKYKILNKEP-----NTKTISPTDHFEFNSKFTDKMRRIKIPLPPVD----EKKKVIEDVDKDRRY 677 (744)
Q Consensus 607 ~~~~l~~~L~~L~~~k~~iL~~~~-----~~~~i~~~~~~~lN~~F~~~~~~i~i~~~~~~----e~~~~~~~~~~~r~~ 677 (744)
+.++++++|++|+ +.+||.+.| +|+.+.+++.|.+|.+|++++.+|+|+.+... |...+.+.+++||++
T Consensus 616 ~~~~l~r~L~~l~--k~~iL~~~~~~~~~~~~~~~~~~~f~lN~~F~~k~~ri~i~~~~~~e~~~e~~~~~~~v~~dR~~ 693 (760)
T 1ldj_A 616 KMDILAQVLQILL--KSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKL 693 (760)
T ss_dssp CHHHHHHHHHHHH--HTTTEECSCTTCCTTTCCCCTTCEEEECSSCCCSSSSBCCCCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--HCCCCEECCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999999998--78950227875444567799999899502555774279856731023413555478889997776
Q ss_pred HHCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECC
Q ss_conf 0211465312577778947889999998267899993679999985232100002799999404369
Q 004571 678 AIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 744 (744)
Q Consensus 678 ~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIekeyi~r~~~~~~~y~Yia 744 (744)
.||||||||||+||+++|++|+.+|+++++++|.|++.+||+|||.||+||||+|+++|+++|+|+|
T Consensus 694 ~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYl~R~~~~~~~y~YlA 760 (760)
T 1ldj_A 694 LIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 760 (760)
T ss_dssp HHHHHHHHHHHHSSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECSSSTTEEEECC
T ss_pred HHEEEEHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCEEECC
T ss_conf 7000010133314777699999999999855589998999999999862142331799986246379
No 2
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=1.00 E-value=1 Score=1100.59 Aligned_cols=696 Identities=35% Similarity=0.643 Sum_probs=648.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 87898977999999999999975199999999677999999994652378887836999999999999999832120010
Q 004571 7 KTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIR 86 (744)
Q Consensus 7 ~~~~f~~~W~~l~~~i~~i~~il~~~~~~~~~~~~y~~lY~~vy~lc~~~~~~~~~e~LY~~l~~~l~~~l~~~~~~~l~ 86 (744)
+..+||++|..|++||+. |+++++. +.+ ||++|++||++|+++ +|++||+++++.+.+|+...+ +.+.
T Consensus 55 ~~~~~e~~W~~L~~ai~~---I~~~~~~-~~s---~e~LY~~vy~lc~~k----~~~~LY~~l~~~~~~~l~~~~-~~l~ 122 (759)
T 2hye_C 55 PDNYTQDTWRKLHEAVRA---VQSSTSI-RYN---LEELYQAVENLCSHK----VSPMLYKQLRQACEDHVQAQI-LPFR 122 (759)
T ss_dssp SCCTTTTHHHHHHHHHHT---TSTTCCC-SSC---HHHHHHHHHHHCCTT----THHHHHHHHHHHHHHHHHHHH-HHHT
T ss_pred CCCHHHHHHHHHHHHHHH---HHHCCCC-CCC---HHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_conf 962188899999999999---9837998-887---999999999999437----799999999999999999999-9987
Q ss_pred C--CCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHCHHHHHCCC-CCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q ss_conf 0--2826799999999999899999998852200023220289-8708899999999999873--268999999999999
Q 004571 87 E--KHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRS-LPPLNEVGLTCFRDLVYTE--LNGKVRDAVITLIDQ 161 (744)
Q Consensus 87 ~--~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~-~~~i~~l~l~~f~~~i~~~--l~~~l~~~il~~i~~ 161 (744)
. .+++.+|..|..+|.+|+.++.+|+++|+||||+|++++. .++|+++|+.+||+.||.. +.++++++++.+|++
T Consensus 123 ~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~lI~~ 202 (759)
T 2hye_C 123 EDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIER 202 (759)
T ss_dssp SCCCCTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 55688799999999999999999999999998737087627999886999999999999715776899999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHH
Q ss_conf 95699369898999999999823675121199889999999999999999988830991079999999999999887100
Q 004571 162 EREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHY 241 (744)
Q Consensus 162 ~R~g~~i~~~~l~~~i~~~~~l~~~~~~~Y~~~FE~~~L~~t~~yY~~~~~~~l~~~~~~eYl~~v~~~l~~E~~r~~~~ 241 (744)
+|+|+.+|+.+++++++||+.+ .+|.+.||++||+.|..||+.+++.|+...++++|+++|+.++++|.+||..|
T Consensus 203 eR~Ge~id~~llk~vi~ml~~L-----~vY~~~FE~~fL~~T~~fY~~e~~~~l~~~~~~~Yl~~~e~rl~eE~~r~~~y 277 (759)
T 2hye_C 203 ERSGEAVDRSLLRSLLGMLSDL-----QVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITY 277 (759)
T ss_dssp TTTTCCCCHHHHHHHHHHHHHT-----TCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTHHHHTTT
T ss_pred HHCCCCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8668977489999999983015-----27789989999999999999999999884999999999999999999999985
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 49885779999999999999999999730001355340385788999998504689993769999999999999999997
Q 004571 242 LHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKL 321 (744)
Q Consensus 242 l~~~t~~~i~~~l~~~LI~~~~~~ll~~~~~g~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~g~~~~~~ 321 (744)
|+++|.+++.++++++||..|.+.|++ +|+..||.+++.++|++||.|+++++++++.++..|++||++.|.+++.+
T Consensus 278 L~~~t~~~l~~~~~~~Li~~~~~~ll~---~~~~~lL~~~~~~dL~~mY~L~~rv~~~l~~l~~~~~~~I~~~g~~iv~~ 354 (759)
T 2hye_C 278 LDHSTQKPLIACVEKQLLGEHLTAILQ---KGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVIN 354 (759)
T ss_dssp SCTTTHHHHHHHHHHHHTTTCSHHHHH---TTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 386369999999999989999999999---64999982387999999999875273638999999999999970877537
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 89874323321000136415899999999999998999985279846899999999898608989888188999999988
Q 004571 322 AEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNI 401 (744)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~li~~~F~~~~~f~~~l~~af~~~~n~~~~~~~~~e~La~y~d~~ 401 (744)
.. .+..||+.|+++|++|+.++.+||++|+.|..++++||+.|+|.+. .++||+||+|||.+
T Consensus 355 ~~----------------~~~~~V~~ll~~~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~--~~~~E~la~y~D~~ 416 (759)
T 2hye_C 355 PE----------------KDKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKRP--NKPAELIAKHVDSK 416 (759)
T ss_dssp GG----------------GTTTHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHTTSC--SHHHHHHHHHHHHH
T ss_pred CC----------------CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHH
T ss_conf 20----------------2789999999999999999998668988999999999999977899--73089999999998
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 60589999996889999998866522246847899999999997854999999399999999999750572569599999
Q 004571 402 LKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMV 481 (744)
Q Consensus 402 lk~~~~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~L~~RLL~~~~~~~~~E~~~i~~Lk~~~G~~~t~kl~~Ml 481 (744)
||+|. ++.+++|++..+++++.+|+|+++||+|+.+|+++||+|||.+++.+.+.|..||++||.+||.+||++|++||
T Consensus 417 Lk~~~-k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~ 495 (759)
T 2hye_C 417 LRAGN-KEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMF 495 (759)
T ss_dssp HSSCG-GGCCSTTHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHTTTCTTTTHHHHHHH
T ss_pred HCCCC-CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 53678-88988899999987644653018799999999999999847799998599999999999884758899999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 85999799889999998249999998642788840598899999996587658999999999997229970388505864
Q 004571 482 TDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLG 561 (744)
Q Consensus 482 ~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~~vLt~~~WP~~~~~~~~lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~l~ 561 (744)
+|+..|++++..|++++.+.+ ...+++|++.|||+++||.++..++.+|++++.+++.|++||..+|+||+|+|++++|
T Consensus 496 ~Di~~S~~l~~~f~~~~~~~~-~~~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~~~~gRkL~W~~~lg 574 (759)
T 2hye_C 496 KDMELSKDIMVHFKQHMQNQS-DSGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLG 574 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-CCCCCEEEEEEEETTTSCCCCCCCCCCCHHHHHHHHHHHHHHHTTSCSEECCBCGGGC
T ss_pred HHHHHHHHHHHHHHHHHHCCC-CCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 879998999999999985346-7777744798847999999998888698999999999999998607997887015667
Q ss_pred EEEEEEEECCEEEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 28898576281499987298999999461899767988998809998999999767220133101138898889999907
Q 004571 562 TCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHF 641 (744)
Q Consensus 562 ~~~i~~~~~~~~~~l~~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~ 641 (744)
+|+++++|++++++++||++||+||++||+.+.+|+++|++.||++.++++++|++|+++|.++|.+.|+++.+.+++.|
T Consensus 575 ~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~lt~~ei~~~t~i~~~~l~r~L~sL~~~k~~vL~~~p~~~~v~~~d~f 654 (759)
T 2hye_C 575 HAVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKF 654 (759)
T ss_dssp EEEEECCCSSCCCEEEEEHHHHHHHHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEEETTCSSSCCSSCEE
T ss_pred CEEEEEEECCCEEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCEE
T ss_conf 58999996793499997299999999855899837999999979099999999999980577635117888879999989
Q ss_pred EECCCCCCCCCCEECCCCCH----HHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 76257999875052059990----23566788599841200211465312577778947889999998267899993679
Q 004571 642 EFNSKFTDKMRRIKIPLPPV----DEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAI 717 (744)
Q Consensus 642 ~lN~~F~~~~~~i~i~~~~~----~e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~i 717 (744)
.+|.+|+++..+++|+.+.. +|...+.+.+++||++.||||||||||+||+++|++|+.+|+++++ |.|++.+|
T Consensus 655 ~lN~~f~~~~~riki~~i~~~e~~~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~--F~p~~~~I 732 (759)
T 2hye_C 655 IFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLK--FPVKPGDL 732 (759)
T ss_dssp EECCCCCCSCSSEECGGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEETHHHHHHHHHHSS--SCCCHHHH
T ss_pred EEECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC--CCCCHHHH
T ss_conf 9622566876478756624555412334268778888999999997999840577779999999999807--89998999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCEEECC
Q ss_conf 999985232100002799999404369
Q 004571 718 KKRIEDLITRDYLERDKSNPNMFRYLA 744 (744)
Q Consensus 718 k~~Ie~LIekeyi~r~~~~~~~y~Yia 744 (744)
|+|||.||+||||+|+++|+++|+|+|
T Consensus 733 Kk~Ie~LIereYleR~~~~~~~y~YlA 759 (759)
T 2hye_C 733 KKRIESLIDRDYMERDKDNPNQYHYVA 759 (759)
T ss_dssp HHHHHHHHHTTSCBCCSSCTTEEECCC
T ss_pred HHHHHHHHCCCCEECCCCCCCEEEECC
T ss_conf 999998741565651799987157449
No 3
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=1.00 E-value=1 Score=622.63 Aligned_cols=357 Identities=32% Similarity=0.493 Sum_probs=325.3
Q ss_pred CCCCHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 88818899999998860589-99999688999999886652224684789999999999785499999939999999999
Q 004571 387 GSSSAELLATFCDNILKKGG-SEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKL 465 (744)
Q Consensus 387 ~~~~~e~La~y~d~~lk~~~-~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~L~~RLL~~~~~~~~~E~~~i~~L 465 (744)
..++||+||+|||.+||+|. +++.++++++..|++++.+|+|+++||+|+.+|+++||+|||++++.+.+.|+.||++|
T Consensus 3 ~~~~~E~la~y~D~~lkk~~~~k~~~~~e~e~~L~~v~~lf~~l~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~kL 82 (382)
T 3dpl_C 3 ESKCPEELANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWL 82 (382)
T ss_dssp CCCSHHHHHHHHHHHHBSSHHHHTSCHHHHHHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 87669999999999954888778888999999999999899981878999999999999985789999809999999999
Q ss_pred HHHHCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCC-CCCCCCCHHHHHHHHHHH
Q ss_conf 975057--25695999998599979988999999824999999864278884059889999-999658765899999999
Q 004571 466 KQQCGG--QFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYK-SFDLNLPAEMVKCVEVFR 542 (744)
Q Consensus 466 k~~~G~--~~t~kl~~Ml~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~~vLt~~~WP~~~-~~~~~lP~~l~~~~~~f~ 542 (744)
+ +||. +||++|++||+|+..|++++..|++++.+.+....+++|++.|||+++||.++ ..++.+|++++.+++.|+
T Consensus 83 K-~cG~~~~ft~kle~M~kDi~~S~~l~~~f~~~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~~lP~~l~~~~~~F~ 161 (382)
T 3dpl_C 83 R-EVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVE 161 (382)
T ss_dssp H-HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC--CCCGGGEEEEEEEHHHHCCCSCCCCCCCCHHHHTTHHHHH
T ss_pred H-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 9-709955589999999999999899999999998615777778853799903886799899888238899999999999
Q ss_pred HHHHHCCCCEEEEECCCCCEEEEEEEECCEEEEEEECHHHHHHHHHHCCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99972299703885058642889857628149998729899999946189--9767988998809998999999767220
Q 004571 543 EFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSS--DRLSYSEIMTQLNLSDDDVVRLLHSLSC 620 (744)
Q Consensus 543 ~~Y~~~~~~R~L~w~~~l~~~~i~~~~~~~~~~l~~s~~Q~~iLllFn~~--~~~t~~ei~~~t~i~~~~l~~~L~~L~~ 620 (744)
.||..+|+||+|+|.|++|+|++++.++++.++++||++||+||++||+. +.+|+++|++.||++.+++.++|++|++
T Consensus 162 ~fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~ILllFn~~~~~~lt~~ei~~~t~i~~~~L~r~L~sL~~ 241 (382)
T 3dpl_C 162 EFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVA 241 (382)
T ss_dssp HHHHTTSSSEEEEECGGGCEEEEEEECSSCEEEEEEEHHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHHHHC
T ss_pred HHHHHCCCCCEEEEECCCCCEEEEEEECCCEEEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 99972389988998467555899999679359999729999999972137788573999999979199999999999760
Q ss_pred C---CCCCCCCCCCC---CCCCCCCEEEECCCCCCC-----CCCEECCCCC------HHHHHHHHHHHHHHHHHHHCEEE
Q ss_conf 1---33101138898---889999907762579998-----7505205999------02356678859984120021146
Q 004571 621 A---KYKILNKEPNT---KTISPTDHFEFNSKFTDK-----MRRIKIPLPP------VDEKKKVIEDVDKDRRYAIDASI 683 (744)
Q Consensus 621 ~---k~~iL~~~~~~---~~i~~~~~~~lN~~F~~~-----~~~i~i~~~~------~~e~~~~~~~~~~~r~~~i~A~I 683 (744)
. |.++|.+.|.+ +.+.+++.|.+|.+|+++ .++++|+.+. ..+.+++.+.+.+||++.|||||
T Consensus 242 ~~k~k~~iL~~~~~~~~~~~~~~~d~f~~N~~F~~~k~~k~~~r~ki~~~~~~q~~~~~e~~~~~~~v~edR~~~i~AaI 321 (382)
T 3dpl_C 242 FPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRTQEAI 321 (382)
T ss_dssp CTTCSSCSEEESSCCSSGGGCCTTCEEEECTTCCEESSSSEESEEEEECCTTTTSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEE
T ss_conf 31010454665687666576899988998278757766666314898146654455510123038779987664046877
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECC
Q ss_conf 5312577778947889999998267899993679999985232100002799999404369
Q 004571 684 VRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 744 (744)
Q Consensus 684 VRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIekeyi~r~~~~~~~y~Yia 744 (744)
|||||+||+|+|++|+.+|+++++++|.|++.+||+|||+||+||||+|+++|+++|+|+|
T Consensus 322 VRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYleR~~~d~~~y~YlA 382 (382)
T 3dpl_C 322 IQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 382 (382)
T ss_dssp HHHHTTSSEECHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred EHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 3133316756699999999999871589999999999999873203305999987378709
No 4
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=535.72 Aligned_cols=369 Identities=25% Similarity=0.485 Sum_probs=343.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHC
Q ss_conf 78989779999999999999751999999996779999999946523788878369999999999999998321200100
Q 004571 8 TIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIRE 87 (744)
Q Consensus 8 ~~~f~~~W~~l~~~i~~i~~il~~~~~~~~~~~~y~~lY~~vy~lc~~~~~~~~~e~LY~~l~~~l~~~l~~~~~~~l~~ 87 (744)
+.+||++|+.|++||++| +++++. +. +||++|++||++|+++ +|++||+++++.+.+|+...+.+.+..
T Consensus 27 ~~~~~~~W~~L~~ai~~I---~~~~~~-~~---s~eeLY~~vy~lc~~k----~g~~LY~~l~~~~~~~l~~~v~~~l~~ 95 (410)
T 4ap2_B 27 EKYVNSIWDLLKNAIQEI---QRKNNS-GL---SFEELYRNAYTMVLHK----HGEKLYTGLREVVTEHLINKVREDVLN 95 (410)
T ss_dssp HHHHHHHHHHHHHHHHHH---HTTCCT-TC---CHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH---HHCCCC-CC---CHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 557999999999999999---846898-88---8999999999999630----699999999999999999999999986
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHCHHHHHCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCC
Q ss_conf 2826799999999999899999998852200023220289870889999999999987--32689999999999999569
Q 004571 88 KHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYT--ELNGKVRDAVITLIDQEREG 165 (744)
Q Consensus 88 ~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~i~~l~l~~f~~~i~~--~l~~~l~~~il~~i~~~R~g 165 (744)
..++.+|+.|..+|.+|+.++.+|+++|+||||+|+++++.++|+++|+.+||+.+|. .+.++++++++.+|+++|+|
T Consensus 96 ~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~lI~~eR~G 175 (410)
T 4ap2_B 96 SLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKG 175 (410)
T ss_dssp TTTSSHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHTTCCCHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 48579999999999999999985037999863788704899879999999999997422678999999999999997499
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHCCCC
Q ss_conf 93698989999999998236751211998899999999999999999888309910799999999999998871004988
Q 004571 166 EQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSS 245 (744)
Q Consensus 166 ~~i~~~~l~~~i~~~~~l~~~~~~~Y~~~FE~~~L~~t~~yY~~~~~~~l~~~~~~eYl~~v~~~l~~E~~r~~~~l~~~ 245 (744)
+.+|+.+++++++||+.+|.+.+.+|.+.||++||+.|..||+.+++.|+...++++|+++|+.++++|.+||..||+++
T Consensus 176 e~id~~lik~vi~ml~~Lg~~~~~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~~R~~~yL~~s 255 (410)
T 4ap2_B 176 EVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKS 255 (410)
T ss_dssp CCCCHHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTSCGG
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 98798999999999998198607777899889999999999999999998609899999999999999999999855860
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 57799999999999999999997300013553403857889999985046899937699999999999999999978987
Q 004571 246 SEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDA 325 (744)
Q Consensus 246 t~~~i~~~l~~~LI~~~~~~ll~~~~~g~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~ 325 (744)
|.+++.++++++||.+|.+.|++++++|+..||++++.++|++||+||+++++|++.++..|++||++.|.+++.+...
T Consensus 256 T~~kL~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~L~~~~~~~I~~~G~~iv~~~~~- 334 (410)
T 4ap2_B 256 TEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALVSEEGE- 334 (410)
T ss_dssp GHHHHHHHHHHHHTGGGHHHHHTCTTTSHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC-
T ss_conf 4999999999999999999998710532899986798999999999986512318999999999999998999846003-
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 432332100013641589999999999999899998527984689999999989860898988818899999998860
Q 004571 326 ASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILK 403 (744)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~li~~~F~~~~~f~~~l~~af~~~~n~~~~~~~~~e~La~y~d~~lk 403 (744)
..+|..||+.|++++++|+.++..||.+|+.|..++++||+.|+|.+. +.||+||+|||.--.
T Consensus 335 ------------~~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~AF~~fiN~~~---~spElla~y~D~~~~ 397 (410)
T 4ap2_B 335 ------------GKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLNS---RSPEYLAENLYFQSH 397 (410)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHC-------------------
T ss_pred ------------CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC---CCHHHHHHHCCCCCC
T ss_conf ------------467589999999999999999999848988999999999999875999---998999898168653
No 5
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=1.00 E-value=1 Score=513.69 Aligned_cols=355 Identities=25% Similarity=0.502 Sum_probs=331.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 88789897799999999999997519999999967799999999465237888783699999999999999983212001
Q 004571 6 RKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSI 85 (744)
Q Consensus 6 ~~~~~f~~~W~~l~~~i~~i~~il~~~~~~~~~~~~y~~lY~~vy~lc~~~~~~~~~e~LY~~l~~~l~~~l~~~~~~~l 85 (744)
.++.+||++|+.|++||++| +++++. ..+||++|++||++|+++ +|++||+++++.+.+|+...+.+.+
T Consensus 8 ~~~~~~~~~W~~L~~ai~~I---~~~~~~----~~s~e~LY~~vy~lc~~k----~g~~LY~~l~~~~~~~l~~~v~~~~ 76 (364)
T 4eoz_B 8 MDEKYVNSIWDLLKNAIQEI---QRKNNS----GLSFEELYRNAYTMVLHK----HGEKLYTGLREVVTEHLINKVREDV 76 (364)
T ss_dssp CHHHHHHHHHHHHHHHHHHH---HTTCGG----GCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH---HHCCCC----CCCHHHHHHHHHHHHHHH----CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98555998999999999999---854888----898999999999999641----7999999999999999999999999
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHCHHHHHCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q ss_conf 002826799999999999899999998852200023220289870889999999999987--326899999999999995
Q 004571 86 REKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYT--ELNGKVRDAVITLIDQER 163 (744)
Q Consensus 86 ~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~i~~l~l~~f~~~i~~--~l~~~l~~~il~~i~~~R 163 (744)
....++.+|+.|..+|.+|+.++.+|+++|+||||+|+++++.++|+++|+.+||+.+|. .+.+++.++++.+|+++|
T Consensus 77 ~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~I~~lgl~~fr~~v~~~~~i~~~l~~~ll~lI~~eR 156 (364)
T 4eoz_B 77 LNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARER 156 (364)
T ss_dssp HTTTTSSHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTGGGTCCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 86485899999999999999999999899998626887048999799999999999980570478999999999999980
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHCC
Q ss_conf 69936989899999999982367512119988999999999999999998883099107999999999999988710049
Q 004571 164 EGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLH 243 (744)
Q Consensus 164 ~g~~i~~~~l~~~i~~~~~l~~~~~~~Y~~~FE~~~L~~t~~yY~~~~~~~l~~~~~~eYl~~v~~~l~~E~~r~~~~l~ 243 (744)
+|+.+|+.+++++++||+.+|.+.+.+|.+.||++||+.|..||+.+++.|+...++++|+++|+.++++|.+||..||+
T Consensus 157 ~Ge~id~~lik~~i~ml~~L~~~~~~~Y~~~FE~~fL~~t~~fY~~es~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL~ 236 (364)
T 4eoz_B 157 KGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLD 236 (364)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 89987999999999999981986178878987899999999999999999987198999999999999999999987579
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88577999999999999999999973000135534038578899999850468999376999999999999999999789
Q 004571 244 SSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAE 323 (744)
Q Consensus 244 ~~t~~~i~~~l~~~LI~~~~~~ll~~~~~g~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~ 323 (744)
++|.+++.++++++||.+|.+.|++++++|+..||++++.++|++||+|++++++|++.++..|++||++.|.+++.+..
T Consensus 237 ~~T~~~l~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~~ 316 (364)
T 4eoz_B 237 KSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALVSEEG 316 (364)
T ss_dssp GGGHHHHHHHHHHHHTTTTHHHHHTCTTTSHHHHTTTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHTC--------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 24288999999999999999999860001179988589799999999998414442899999999999999899973700
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 8743233210001364158999999999999989999852798468999999998986089
Q 004571 324 DAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKG 384 (744)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~li~~~F~~~~~f~~~l~~af~~~~n~~ 384 (744)
. ..+|..||+.|+++|++|+.++.+||++|+.|..++++||+.|+|.+
T Consensus 317 ~-------------~~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~n 364 (364)
T 4eoz_B 317 E-------------GKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLN 364 (364)
T ss_dssp -------------------------------------------------------------
T ss_pred C-------------CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 4-------------47758999999999999999999980898999999999999960494
No 6
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}
Probab=1.00 E-value=1 Score=495.94 Aligned_cols=360 Identities=20% Similarity=0.460 Sum_probs=326.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 89888789897799999999999997519999999967799999999465237888783699999999999999983212
Q 004571 3 MNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVL 82 (744)
Q Consensus 3 ~~~~~~~~f~~~W~~l~~~i~~i~~il~~~~~~~~~~~~y~~lY~~vy~lc~~~~~~~~~e~LY~~l~~~l~~~l~~~~~ 82 (744)
..++++.+||++|+.|++||++|.. + .+++..+||++|++||++|++++ .+|++||+++++.+.+|+...+.
T Consensus 7 ~~~~~~~~~e~~W~~L~~ai~~I~~---~---~~~~~~s~e~LY~~vy~lc~~~~--~~~~~LY~~l~~~~~~~l~~~~~ 78 (391)
T 2wzk_A 7 LKNKGSLQFEDKWDFMHPIVLKLLR---Q---ESVTKQQWFDLFSDVHAVCLWDD--KGSSKIHQALKEDILEFIKQAQA 78 (391)
T ss_dssp -----CCSHHHHHHHHHHHHHHHHH---T---CCCCHHHHHHHHHHHHHHHHHCT--THHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHH---C---CCCCHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4787635699899999999999986---7---99986789999999999992675--24499999999999999999999
Q ss_pred CHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHCHHHHHCC--------CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00100282679999999999989999999885220002322028--------9870889999999999987326899999
Q 004571 83 PSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARR--------SLPPLNEVGLTCFRDLVYTELNGKVRDA 154 (744)
Q Consensus 83 ~~l~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~--------~~~~i~~l~l~~f~~~i~~~l~~~l~~~ 154 (744)
+......++.+|..|..+|.+|+.++.+|+++|+||||+|+.+. +.++|+++|+.+||+.||.+++++++++
T Consensus 79 ~~~~~~~~e~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~~~~~~~~I~~lgL~~fr~~v~~~i~~~l~~~ 158 (391)
T 2wzk_A 79 RVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEVTLLGKQSSNKKSNMEDSIVRKLMLDTWNESIFSNIKNRLQDS 158 (391)
T ss_dssp HHHTCCSHHHHHHHHHHHHHHHHHHTTTTTGGGHHHHTTSTTC--------CTTCHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99851677799999999999999999998999999878987314411235788886999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC---CHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999999569936989899999999982367---512119988999999999999999998883099107999999999
Q 004571 155 VITLIDQEREGEQIDRALLKNVLDIFVEIGMG---QMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECL 231 (744)
Q Consensus 155 il~~i~~~R~g~~i~~~~l~~~i~~~~~l~~~---~~~~Y~~~FE~~~L~~t~~yY~~~~~~~l~~~~~~eYl~~v~~~l 231 (744)
++.+|+++|+|+.+|+.+++++++||+.+|.+ .+.+|.+.||++||+.|..||+.+++.|+.+.++++|+++|+.++
T Consensus 159 ll~lI~~eR~Ge~id~~llk~vi~~l~~L~~~~~~~l~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL 238 (391)
T 2wzk_A 159 AMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKL 238 (391)
T ss_dssp HHHHHHHHHTTCCCCTHHHHHHHHHHHHSCCCSSCTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99999997489987799999999999997468655577867998999999999999999999998499999999999999
Q ss_pred HHHHHHHCHHCC----CCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 999988710049----8857799999999999999999997300013553403857889999985046899937699999
Q 004571 232 KREKDRVSHYLH----SSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIF 307 (744)
Q Consensus 232 ~~E~~r~~~~l~----~~t~~~i~~~l~~~LI~~~~~~ll~~~~~g~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~ 307 (744)
++|.+||..||+ ++|.+++.++++++||..|.+.|++ |+..||++++.++|++||+||+++++|++.++..|
T Consensus 239 ~eE~~R~~~yL~~~~~~sT~~kl~~~~e~~LI~~h~~~ll~----~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~ 314 (391)
T 2wzk_A 239 KEEEKRALRYLETRRECNSVEALMECCVNALVTSFKETILA----ECQGMIKRNETEKLHLMFSLMDKVPNGIEPMLKDL 314 (391)
T ss_dssp HHHHHHHHHHSCCTTCCSHHHHHHHHHHHHHTGGGHHHHHT----THHHHHHTTCHHHHHHHHHHHTTSTTCSHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 99999999873876774359999999999999999999999----89999875879999999998763745289999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999999978987432332100013641589999999999999899998527984689999999989860898
Q 004571 308 KQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGV 385 (744)
Q Consensus 308 ~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~li~~~F~~~~~f~~~l~~af~~~~n~~~ 385 (744)
++||++.|.+++....+. ...+|..||+.|+++|++|+.++..||.+|+.|.+++++||+.|+|.+.
T Consensus 315 ~~~I~~~G~~~v~~~~~~-----------~~~~~~~~V~~LL~l~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~ 381 (391)
T 2wzk_A 315 EEHIISAGLADMVAAAET-----------ITTDSEKYREQLDTLFNRFSKLVKEAFQDDPRFLTARDKAYKAVVNDAT 381 (391)
T ss_dssp HHHHHHHHHHHHHHHGGG-----------TTTCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCC-----------CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCH
T ss_conf 999999979999701012-----------4478799999999999999999999829988999999999999968766
No 7
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=1.00 E-value=1 Score=486.79 Aligned_cols=344 Identities=25% Similarity=0.531 Sum_probs=317.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 87898977999999999999975199999999677999999994652378887836999999999999999832120010
Q 004571 7 KTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIR 86 (744)
Q Consensus 7 ~~~~f~~~W~~l~~~i~~i~~il~~~~~~~~~~~~y~~lY~~vy~lc~~~~~~~~~e~LY~~l~~~l~~~l~~~~~~~l~ 86 (744)
++.+||++|+.|++||.+| +++++. +. +||++|++||++|+++ +|++||+++++.+.+|+...+.+...
T Consensus 6 ~~~~~~~~W~~L~~ai~~I---~~~~~~-~~---s~eeLY~~vy~lc~~~----~g~~LY~~l~~~~~~~l~~~~~~~~~ 74 (354)
T 4a64_A 6 PENYTDETWQKLKEAVEAI---QNSTSI-KY---NLEELYQAVENLCSYK----ISANLYKQLRQICEDHIKAQIHQFRE 74 (354)
T ss_dssp CSSSTTHHHHHHHHHHHHH---HTTCCC-CS---CHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHHTTGGGGC
T ss_pred CHHHHHHHHHHHHHHHHHH---HHCCCC-CC---CHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8788997999999999999---847999-99---9999999999999668----68999999999999999999999987
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHCHHCHHHHHCCC-CCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q ss_conf 02-826799999999999899999998852200023220289-870889999999999987--32689999999999999
Q 004571 87 EK-HDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRS-LPPLNEVGLTCFRDLVYT--ELNGKVRDAVITLIDQE 162 (744)
Q Consensus 87 ~~-~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~-~~~i~~l~l~~f~~~i~~--~l~~~l~~~il~~i~~~ 162 (744)
.. +++.+|+.|..+|.+|+.++.+|+++|+||||+|+++++ .++|+++|+.+||+.+|. .+.+++.++++.+|+++
T Consensus 75 ~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~ll~lI~~e 154 (354)
T 4a64_A 75 DSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERE 154 (354)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHCSTTTSCCSCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 03667999999999999999999998899986223567148999979999999999997255778999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHC
Q ss_conf 56993698989999999998236751211998899999999999999999888309910799999999999998871004
Q 004571 163 REGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYL 242 (744)
Q Consensus 163 R~g~~i~~~~l~~~i~~~~~l~~~~~~~Y~~~FE~~~L~~t~~yY~~~~~~~l~~~~~~eYl~~v~~~l~~E~~r~~~~l 242 (744)
|+|+.+|+.+++++++|+..+ .+|.+.||++||+.|..||+.+++.|+.+.++++|+++|+.++++|.+||..||
T Consensus 155 R~Ge~id~~lik~~i~ml~~L-----~vY~~~FE~~fL~~t~~fY~~e~~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL 229 (354)
T 4a64_A 155 RNGEAIDRSLLRSLLSMLSDL-----QIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYL 229 (354)
T ss_dssp HTTCCCCHHHHHHHHHHHHHT-----TCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HCCCCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 289977799999999988455-----234799999999999999999999988719899999999999999999999867
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98857799999999999999999997300013553403857889999985046899937699999999999999999978
Q 004571 243 HSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLA 322 (744)
Q Consensus 243 ~~~t~~~i~~~l~~~LI~~~~~~ll~~~~~g~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~ 322 (744)
+++|.+++.++++++||.+|.+.|+. +|+..||++++.++|++||+|++++++|++.++..|++||.+.|.+++.+.
T Consensus 230 ~~~T~~~l~~~~e~~LI~~h~~~ll~---~~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~ 306 (354)
T 4a64_A 230 DQTTQKSLIATVEKQLLGEHLTAILQ---KGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVINP 306 (354)
T ss_dssp CGGGHHHHHHHHHHHHTGGGHHHHHH---HHHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 86048999999999999999999999---879999877878899999999740666289999999999999989988196
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 987432332100013641589999999999999899998527984689999999989860898
Q 004571 323 EDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGV 385 (744)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~li~~~F~~~~~f~~~l~~af~~~~n~~~ 385 (744)
..+..||+.|+++|++|+.++.+||++|+.|..++++||+.|+|.+.
T Consensus 307 ----------------~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~~~ 353 (354)
T 4a64_A 307 ----------------EKDKTMRQELDDFKDKVDHIIDICFLKNEKFINAMKEAFETFINKRP 353 (354)
T ss_dssp ----------------CSSSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC-----
T ss_pred ----------------CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf ----------------34679999999999999999998869989999999999999828999
No 8
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=1.00 E-value=1 Score=173.93 Aligned_cols=82 Identities=48% Similarity=0.713 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEE
Q ss_conf 35667885998412002114653125777789478899999982678999936799999852321000027999994043
Q 004571 663 EKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRY 742 (744)
Q Consensus 663 e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIekeyi~r~~~~~~~y~Y 742 (744)
|...+.+.+.+||.+.||||||||||++|+|+|++|+.+|.++++++|.|++.+||++||.||+||||+|+++|+++|+|
T Consensus 11 e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYleR~~~d~~~y~Y 90 (92)
T 1iuy_A 11 ERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTY 90 (92)
T ss_dssp CCCCCCSCSCCCTTTHHHHHHHHHHHHHCEEEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEECSSCSSEEEE
T ss_pred HHHHHHHHHHHHHHHHEEEEEEEHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 99999999999878773145540543023054999999999997077899989999999988655366258999872675
Q ss_pred CC
Q ss_conf 69
Q 004571 743 LA 744 (744)
Q Consensus 743 ia 744 (744)
+|
T Consensus 91 ~A 92 (92)
T 1iuy_A 91 VA 92 (92)
T ss_dssp C-
T ss_pred CC
T ss_conf 29
No 9
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=1.00 E-value=1 Score=173.09 Aligned_cols=82 Identities=33% Similarity=0.653 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf 23566788599841200211465312577778947889999998267899993679999985232100002799999404
Q 004571 662 DEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFR 741 (744)
Q Consensus 662 ~e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIekeyi~r~~~~~~~y~ 741 (744)
+|..++.+.+.+||.+.||||||||||++|+|+|++|+.+|.++++++|.|++.+||++||.||+||||+|+++| ++|+
T Consensus 7 ~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYleR~~~~-~~y~ 85 (88)
T 3o2p_E 7 TEDERIEKELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDDG-ESYA 85 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECTTS-SEEE
T ss_pred CHHHHHHHHHHHHHHHHHHEEEEHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CEEE
T ss_conf 528889999999766660023422211555144999999999998665899999999999999853577428999-8677
Q ss_pred ECC
Q ss_conf 369
Q 004571 742 YLA 744 (744)
Q Consensus 742 Yia 744 (744)
|+|
T Consensus 86 YlA 88 (88)
T 3o2p_E 86 YLA 88 (88)
T ss_dssp ECC
T ss_pred EEC
T ss_conf 519
No 10
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=172.20 Aligned_cols=81 Identities=54% Similarity=0.801 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf 23566788599841200211465312577778947889999998267899993679999985232100002799999404
Q 004571 662 DEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFR 741 (744)
Q Consensus 662 ~e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIekeyi~r~~~~~~~y~ 741 (744)
.|...+.+.+.+||.+.||||||||||++|+|+|++|+.+|.++++ |.|++.+||++||.||+||||+|+++|+++|+
T Consensus 15 ~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~eV~~ql~--F~p~~~~IKk~IE~LIereYleR~~~d~~~y~ 92 (101)
T 2do7_A 15 EEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLK--FPVKPADLKKRIESLIDRDYMERDKENPNQYN 92 (101)
T ss_dssp CCCSSCCSHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHCS--SCCCHHHHHHHHHHHHHTTSEEECSSCTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 8899999999999999999999999722020559999999999837--99998999999999865657744899988388
Q ss_pred ECC
Q ss_conf 369
Q 004571 742 YLA 744 (744)
Q Consensus 742 Yia 744 (744)
|+|
T Consensus 93 YlA 95 (101)
T 2do7_A 93 YIA 95 (101)
T ss_dssp ECC
T ss_pred EEC
T ss_conf 865
Done!