Query 004573
Match_columns 744
No_of_seqs 499 out of 4214
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 01:37:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004573.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004573hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 6.7E-71 1.5E-75 626.6 28.3 607 2-735 257-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.6E-58 3.5E-63 555.4 35.4 598 3-693 293-945 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 8.8E-32 1.9E-36 278.2 4.8 184 3-187 98-284 (287)
4 PLN00113 leucine-rich repeat r 99.9 1.6E-23 3.4E-28 253.2 17.1 175 258-435 140-320 (968)
5 PLN00113 leucine-rich repeat r 99.9 5.2E-23 1.1E-27 248.6 17.1 176 257-436 117-297 (968)
6 PLN03210 Resistant to P. syrin 99.8 2.5E-19 5.5E-24 216.7 25.8 348 257-666 588-944 (1153)
7 KOG0444 Cytoskeletal regulator 99.8 7.7E-21 1.7E-25 196.6 -5.3 187 248-439 44-238 (1255)
8 KOG4194 Membrane glycoprotein 99.8 1.5E-19 3.3E-24 186.0 4.2 380 258-701 52-439 (873)
9 KOG4194 Membrane glycoprotein 99.7 1.2E-18 2.7E-23 179.4 1.5 304 257-626 124-432 (873)
10 KOG0444 Cytoskeletal regulator 99.7 6.9E-19 1.5E-23 182.3 -1.8 179 255-437 100-282 (1255)
11 KOG0472 Leucine-rich repeat pr 99.7 2.5E-19 5.3E-24 176.8 -12.1 175 259-440 138-314 (565)
12 KOG0472 Leucine-rich repeat pr 99.6 4.7E-18 1E-22 167.8 -8.5 217 257-526 90-308 (565)
13 KOG0618 Serine/threonine phosp 99.6 2.3E-16 5.1E-21 171.6 -2.5 130 489-664 359-488 (1081)
14 KOG0617 Ras suppressor protein 99.5 1E-15 2.2E-20 134.2 -4.9 161 257-422 32-195 (264)
15 KOG0617 Ras suppressor protein 99.5 1.6E-15 3.6E-20 132.8 -4.2 156 280-439 30-189 (264)
16 PRK15387 E3 ubiquitin-protein 99.4 1.8E-12 3.8E-17 146.2 14.0 115 261-393 204-318 (788)
17 PRK15387 E3 ubiquitin-protein 99.4 1.4E-12 3E-17 147.0 11.7 167 241-433 206-372 (788)
18 KOG0618 Serine/threonine phosp 99.4 3.6E-14 7.9E-19 154.8 -2.2 143 264-411 4-147 (1081)
19 KOG4658 Apoptotic ATPase [Sign 99.3 1.4E-12 3E-17 150.4 6.7 106 257-365 544-653 (889)
20 PRK15370 E3 ubiquitin-protein 99.3 2.5E-11 5.4E-16 137.9 13.8 159 258-435 178-337 (754)
21 KOG4237 Extracellular matrix p 99.2 2.6E-12 5.6E-17 127.6 -1.4 301 262-617 50-354 (498)
22 PRK15370 E3 ubiquitin-protein 99.1 1.2E-10 2.6E-15 132.4 10.2 169 248-437 190-360 (754)
23 KOG4237 Extracellular matrix p 99.0 7.4E-11 1.6E-15 117.4 1.5 211 245-458 55-356 (498)
24 KOG0532 Leucine-rich repeat (L 98.9 9.8E-11 2.1E-15 121.8 -4.0 150 260-416 100-249 (722)
25 PF14580 LRR_9: Leucine-rich r 98.8 5.7E-09 1.2E-13 96.7 5.6 125 305-432 17-149 (175)
26 cd00116 LRR_RI Leucine-rich re 98.8 4.1E-09 9E-14 110.8 3.7 176 259-437 24-235 (319)
27 KOG1259 Nischarin, modulator o 98.7 1.8E-09 3.9E-14 103.7 -1.2 126 259-390 285-412 (490)
28 PF14580 LRR_9: Leucine-rich r 98.7 7.7E-09 1.7E-13 95.8 2.9 116 320-438 9-128 (175)
29 KOG0532 Leucine-rich repeat (L 98.6 2.4E-09 5.3E-14 111.6 -2.2 179 259-444 76-255 (722)
30 KOG1259 Nischarin, modulator o 98.6 1E-08 2.3E-13 98.5 -0.1 124 308-435 285-411 (490)
31 COG4886 Leucine-rich repeat (L 98.5 7.4E-08 1.6E-12 104.4 5.0 174 258-437 116-291 (394)
32 cd00116 LRR_RI Leucine-rich re 98.4 2.5E-07 5.4E-12 97.2 5.3 155 282-436 80-263 (319)
33 KOG3207 Beta-tubulin folding c 98.4 4.8E-08 1E-12 99.2 -0.5 198 257-454 120-332 (505)
34 KOG4341 F-box protein containi 98.4 4.9E-09 1.1E-13 105.6 -8.3 82 307-388 138-227 (483)
35 COG4886 Leucine-rich repeat (L 98.3 4.5E-07 9.8E-12 98.2 4.3 152 259-416 141-292 (394)
36 PF13855 LRR_8: Leucine rich r 98.3 7.1E-07 1.5E-11 67.7 3.6 59 354-412 1-60 (61)
37 PF13855 LRR_8: Leucine rich r 98.2 1.5E-06 3.3E-11 65.8 3.2 58 283-341 1-59 (61)
38 KOG4341 F-box protein containi 98.1 9.1E-08 2E-12 96.6 -4.7 80 284-364 139-226 (483)
39 PLN03150 hypothetical protein; 98.1 8.2E-06 1.8E-10 92.9 8.4 103 309-412 420-526 (623)
40 PLN03150 hypothetical protein; 98.1 7.6E-06 1.6E-10 93.1 7.6 103 332-434 419-526 (623)
41 KOG3207 Beta-tubulin folding c 98.0 2.6E-06 5.7E-11 86.8 2.3 179 258-436 146-339 (505)
42 PRK04841 transcriptional regul 98.0 7.3E-05 1.6E-09 90.5 14.6 199 5-234 120-332 (903)
43 PRK15386 type III secretion pr 98.0 2.7E-05 5.8E-10 81.3 8.6 59 259-325 53-112 (426)
44 KOG2120 SCF ubiquitin ligase, 97.9 1.3E-06 2.8E-11 84.5 -2.7 138 489-663 234-374 (419)
45 KOG1859 Leucine-rich repeat pr 97.8 9E-07 1.9E-11 95.3 -5.1 124 308-436 165-292 (1096)
46 KOG0531 Protein phosphatase 1, 97.8 2.5E-06 5.5E-11 92.6 -2.5 168 260-435 74-244 (414)
47 KOG0531 Protein phosphatase 1, 97.7 5.3E-06 1.1E-10 90.1 -0.7 171 256-436 93-268 (414)
48 PF12799 LRR_4: Leucine Rich r 97.7 2.8E-05 6.1E-10 53.9 3.1 40 354-393 1-40 (44)
49 KOG2120 SCF ubiquitin ligase, 97.7 1.2E-06 2.6E-11 84.7 -5.4 65 489-555 286-351 (419)
50 PRK15386 type III secretion pr 97.7 0.0001 2.2E-09 77.0 7.7 117 281-411 50-187 (426)
51 KOG1859 Leucine-rich repeat pr 97.6 7.7E-06 1.7E-10 88.4 -1.7 101 349-451 182-282 (1096)
52 KOG3665 ZYG-1-like serine/thre 97.5 4.4E-05 9.5E-10 86.7 2.0 85 351-436 170-263 (699)
53 KOG3665 ZYG-1-like serine/thre 97.2 0.00024 5.3E-09 80.7 4.3 129 258-390 122-263 (699)
54 PF12799 LRR_4: Leucine Rich r 97.2 0.00038 8.2E-09 48.2 3.2 42 377-419 1-42 (44)
55 KOG1644 U2-associated snRNP A' 96.9 0.0021 4.5E-08 59.5 5.8 105 257-386 41-149 (233)
56 KOG2982 Uncharacterized conser 96.8 0.00033 7.1E-09 68.3 0.5 23 509-531 243-265 (418)
57 KOG1909 Ran GTPase-activating 96.8 0.00042 9E-09 69.3 1.1 63 374-436 154-226 (382)
58 KOG1644 U2-associated snRNP A' 96.6 0.0036 7.9E-08 57.9 5.6 104 308-413 43-152 (233)
59 KOG4579 Leucine-rich repeat (L 96.5 0.00039 8.4E-09 60.0 -1.2 76 260-338 55-130 (177)
60 KOG2739 Leucine-rich acidic nu 96.4 0.0015 3.3E-08 63.0 1.9 104 282-387 42-153 (260)
61 KOG1909 Ran GTPase-activating 96.4 0.00039 8.4E-09 69.5 -2.2 153 282-435 119-310 (382)
62 KOG4579 Leucine-rich repeat (L 96.3 0.00045 9.7E-09 59.6 -2.3 60 281-341 51-110 (177)
63 KOG2739 Leucine-rich acidic nu 96.1 0.0035 7.6E-08 60.6 2.8 97 332-431 44-151 (260)
64 KOG2123 Uncharacterized conser 96.0 0.00027 5.8E-09 68.2 -5.4 98 330-429 18-123 (388)
65 KOG1947 Leucine rich repeat pr 96.0 0.0012 2.6E-08 73.7 -1.3 35 330-364 187-224 (482)
66 TIGR03015 pepcterm_ATPase puta 96.0 0.075 1.6E-06 54.1 12.0 104 4-108 121-242 (269)
67 KOG2982 Uncharacterized conser 96.0 0.0024 5.2E-08 62.4 0.8 83 281-364 69-156 (418)
68 PRK06893 DNA replication initi 95.7 0.016 3.4E-07 57.3 5.4 94 8-103 93-202 (229)
69 PF13306 LRR_5: Leucine rich r 95.6 0.051 1.1E-06 48.0 7.7 117 279-403 8-128 (129)
70 PF05729 NACHT: NACHT domain 95.5 0.015 3.3E-07 54.0 4.3 71 3-73 78-163 (166)
71 COG2909 MalT ATP-dependent tra 95.4 0.076 1.7E-06 60.0 9.8 198 5-235 128-339 (894)
72 PF00560 LRR_1: Leucine Rich R 95.0 0.011 2.4E-07 33.9 1.0 21 355-375 1-21 (22)
73 PF01637 Arch_ATPase: Archaeal 94.9 0.047 1E-06 54.0 6.1 97 5-103 117-233 (234)
74 PRK00080 ruvB Holliday junctio 94.9 0.11 2.3E-06 54.6 8.7 157 34-217 151-313 (328)
75 PF13306 LRR_5: Leucine rich r 94.3 0.11 2.3E-06 45.9 6.3 106 298-410 3-112 (129)
76 TIGR00635 ruvB Holliday juncti 94.2 0.84 1.8E-05 47.3 13.6 157 34-217 130-292 (305)
77 KOG1947 Leucine rich repeat pr 93.6 0.022 4.8E-07 63.5 0.3 143 513-688 186-331 (482)
78 PF13504 LRR_7: Leucine rich r 93.4 0.056 1.2E-06 28.8 1.6 17 678-695 1-17 (17)
79 KOG2123 Uncharacterized conser 93.3 0.0056 1.2E-07 59.4 -4.1 81 352-435 17-100 (388)
80 PF00560 LRR_1: Leucine Rich R 92.7 0.064 1.4E-06 30.7 1.3 20 679-699 1-20 (22)
81 PRK09087 hypothetical protein; 92.3 0.63 1.4E-05 45.7 8.5 92 8-103 89-194 (226)
82 KOG3864 Uncharacterized conser 92.2 0.053 1.1E-06 50.5 0.7 43 651-693 124-166 (221)
83 PF13504 LRR_7: Leucine rich r 92.1 0.094 2E-06 27.9 1.3 16 355-370 2-17 (17)
84 KOG3864 Uncharacterized conser 92.1 0.025 5.5E-07 52.6 -1.4 91 584-694 102-192 (221)
85 COG5238 RNA1 Ran GTPase-activa 90.9 0.18 3.9E-06 49.2 2.7 63 375-437 155-228 (388)
86 PRK00411 cdc6 cell division co 90.5 4 8.6E-05 44.1 13.3 191 5-214 137-358 (394)
87 COG3899 Predicted ATPase [Gene 88.4 2.4 5.2E-05 50.3 10.2 160 53-234 212-386 (849)
88 PF13173 AAA_14: AAA domain 88.1 0.38 8.3E-06 42.5 2.6 61 5-65 60-127 (128)
89 PRK13342 recombination factor 87.7 2.8 6.2E-05 45.5 9.5 100 4-106 90-198 (413)
90 COG5238 RNA1 Ran GTPase-activa 87.6 0.79 1.7E-05 44.9 4.5 87 349-435 87-197 (388)
91 TIGR03420 DnaA_homol_Hda DnaA 87.6 1 2.3E-05 44.2 5.7 97 8-106 92-203 (226)
92 smart00370 LRR Leucine-rich re 86.3 0.54 1.2E-05 28.1 1.7 20 377-396 2-21 (26)
93 smart00369 LRR_TYP Leucine-ric 86.3 0.54 1.2E-05 28.1 1.7 20 377-396 2-21 (26)
94 TIGR02928 orc1/cdc6 family rep 86.0 23 0.00049 37.7 15.4 192 5-214 128-350 (365)
95 TIGR00678 holB DNA polymerase 85.8 1.9 4E-05 41.1 6.2 88 5-100 95-187 (188)
96 PRK07471 DNA polymerase III su 85.8 2.4 5.2E-05 44.9 7.4 94 5-104 140-238 (365)
97 PRK08727 hypothetical protein; 84.4 2.1 4.7E-05 42.2 6.0 92 8-101 95-201 (233)
98 smart00370 LRR Leucine-rich re 84.1 0.95 2.1E-05 27.0 2.1 22 283-304 2-23 (26)
99 smart00369 LRR_TYP Leucine-ric 84.1 0.95 2.1E-05 27.0 2.1 22 283-304 2-23 (26)
100 PRK05564 DNA polymerase III su 84.1 3.6 7.8E-05 42.8 7.9 93 5-103 93-189 (313)
101 PRK06645 DNA polymerase III su 83.2 2.8 6E-05 46.4 6.8 95 5-101 127-226 (507)
102 PRK09112 DNA polymerase III su 80.5 3.8 8.2E-05 43.2 6.4 98 4-105 139-241 (351)
103 smart00367 LRR_CC Leucine-rich 80.3 1.1 2.3E-05 26.9 1.3 16 677-692 1-16 (26)
104 PRK08084 DNA replication initi 79.1 4.1 8.9E-05 40.3 5.9 91 9-102 100-207 (235)
105 PRK05642 DNA replication initi 77.9 5.2 0.00011 39.5 6.2 92 9-102 100-206 (234)
106 COG3903 Predicted ATPase [Gene 77.5 0.91 2E-05 47.4 0.7 215 4-234 86-314 (414)
107 PRK06620 hypothetical protein; 77.1 6.7 0.00015 38.1 6.6 90 8-101 87-186 (214)
108 COG2256 MGS1 ATPase related to 75.8 4 8.6E-05 42.7 4.6 94 3-99 101-207 (436)
109 KOG0473 Leucine-rich repeat pr 75.6 0.12 2.6E-06 49.1 -5.7 82 282-365 41-122 (326)
110 PF14516 AAA_35: AAA-like doma 75.1 21 0.00045 37.4 10.0 53 53-111 194-246 (331)
111 PRK14087 dnaA chromosomal repl 74.7 6.4 0.00014 43.1 6.3 98 8-105 208-320 (450)
112 TIGR02903 spore_lon_C ATP-depe 74.3 7.7 0.00017 44.4 7.0 103 3-107 289-398 (615)
113 PRK14961 DNA polymerase III su 73.3 13 0.00027 39.6 8.0 95 5-101 118-217 (363)
114 KOG0473 Leucine-rich repeat pr 72.4 0.2 4.3E-06 47.8 -5.1 80 306-387 41-121 (326)
115 PRK12402 replication factor C 72.0 9 0.0002 40.2 6.6 94 7-102 126-224 (337)
116 TIGR02397 dnaX_nterm DNA polym 71.0 15 0.00033 38.9 8.1 98 5-104 116-218 (355)
117 PF00308 Bac_DnaA: Bacterial d 70.0 8.6 0.00019 37.5 5.4 90 9-102 100-206 (219)
118 PRK07003 DNA polymerase III su 69.5 21 0.00045 41.3 8.7 97 5-103 118-220 (830)
119 PRK04195 replication factor C 68.5 56 0.0012 36.3 12.1 161 6-187 98-271 (482)
120 PRK12323 DNA polymerase III su 68.4 9.1 0.0002 43.3 5.7 97 4-102 122-223 (700)
121 PRK14963 DNA polymerase III su 67.7 15 0.00033 40.8 7.3 95 5-101 115-214 (504)
122 PRK07940 DNA polymerase III su 67.6 13 0.00029 39.8 6.6 93 5-104 116-213 (394)
123 PLN03025 replication factor C 65.0 8.1 0.00018 40.3 4.4 94 5-100 98-196 (319)
124 COG1373 Predicted ATPase (AAA+ 64.7 11 0.00025 40.4 5.5 62 6-68 94-162 (398)
125 PRK08903 DnaA regulatory inact 64.2 16 0.00036 35.7 6.2 99 8-108 92-203 (227)
126 PRK05707 DNA polymerase III su 63.2 19 0.00041 37.6 6.6 93 5-104 106-203 (328)
127 PRK14957 DNA polymerase III su 59.0 17 0.00036 40.7 5.6 98 5-104 118-221 (546)
128 PRK14086 dnaA chromosomal repl 58.7 34 0.00073 38.7 7.9 86 9-98 380-482 (617)
129 PRK14959 DNA polymerase III su 57.5 21 0.00045 40.5 6.1 102 5-108 118-225 (624)
130 smart00364 LRR_BAC Leucine-ric 56.5 7.4 0.00016 23.3 1.3 17 355-371 3-19 (26)
131 PRK13341 recombination factor 55.6 20 0.00043 41.8 5.7 91 5-98 108-211 (725)
132 PRK14962 DNA polymerase III su 55.1 23 0.0005 39.0 5.8 100 5-106 116-221 (472)
133 PRK14955 DNA polymerase III su 54.0 26 0.00057 37.8 6.0 95 5-101 126-225 (397)
134 PRK00440 rfc replication facto 53.4 30 0.00064 35.9 6.3 94 6-101 102-200 (319)
135 PRK14960 DNA polymerase III su 52.7 28 0.0006 39.7 6.0 95 5-101 117-216 (702)
136 PRK14956 DNA polymerase III su 52.7 27 0.00058 38.3 5.7 94 5-100 120-218 (484)
137 smart00365 LRR_SD22 Leucine-ri 52.1 12 0.00026 22.4 1.7 14 354-367 2-15 (26)
138 PRK14949 DNA polymerase III su 52.0 34 0.00074 40.4 6.7 97 4-102 117-218 (944)
139 PRK14970 DNA polymerase III su 48.9 45 0.00098 35.5 6.9 94 5-100 107-205 (367)
140 PRK14971 DNA polymerase III su 48.8 30 0.00066 39.6 5.7 94 6-101 121-219 (614)
141 PRK08769 DNA polymerase III su 48.4 42 0.0009 34.8 6.2 92 5-104 112-208 (319)
142 PF02463 SMC_N: RecF/RecN/SMC 46.5 9.7 0.00021 37.1 1.2 44 9-52 161-207 (220)
143 PF13516 LRR_6: Leucine Rich r 46.3 11 0.00024 21.7 1.0 13 354-366 2-14 (24)
144 PRK14951 DNA polymerase III su 45.8 53 0.0012 37.4 7.0 95 5-101 123-222 (618)
145 KOG0989 Replication factor C, 45.7 20 0.00043 36.3 3.2 88 9-98 132-224 (346)
146 TIGR01242 26Sp45 26S proteasom 45.4 25 0.00054 37.4 4.2 64 33-99 260-329 (364)
147 PRK08691 DNA polymerase III su 44.9 31 0.00068 39.6 4.9 95 5-101 118-217 (709)
148 PRK14964 DNA polymerase III su 44.0 45 0.00097 36.8 5.9 95 5-101 115-214 (491)
149 TIGR00362 DnaA chromosomal rep 43.7 38 0.00082 36.7 5.4 91 9-101 202-307 (405)
150 PRK07133 DNA polymerase III su 43.5 57 0.0012 37.8 6.8 96 5-102 117-218 (725)
151 PRK08451 DNA polymerase III su 43.2 56 0.0012 36.5 6.5 96 5-102 116-216 (535)
152 PRK14954 DNA polymerase III su 43.1 50 0.0011 37.8 6.2 92 6-99 127-223 (620)
153 PRK06305 DNA polymerase III su 42.7 57 0.0012 35.8 6.5 97 5-103 120-222 (451)
154 PRK07764 DNA polymerase III su 42.5 60 0.0013 38.5 7.0 95 5-101 119-218 (824)
155 PTZ00112 origin recognition co 42.4 2.8E+02 0.0061 33.2 11.8 99 7-107 870-985 (1164)
156 PRK14950 DNA polymerase III su 41.3 64 0.0014 36.8 6.9 97 5-103 119-220 (585)
157 PRK05896 DNA polymerase III su 41.2 41 0.00089 38.0 5.1 98 5-105 119-222 (605)
158 COG0593 DnaA ATPase involved i 40.8 78 0.0017 33.9 6.8 115 9-125 178-314 (408)
159 PRK06871 DNA polymerase III su 40.3 90 0.002 32.5 7.2 90 5-101 106-200 (325)
160 PRK07399 DNA polymerase III su 38.6 76 0.0016 32.9 6.4 94 5-103 123-220 (314)
161 PRK07994 DNA polymerase III su 38.6 51 0.0011 37.8 5.4 97 4-102 117-218 (647)
162 PF06144 DNA_pol3_delta: DNA p 36.9 87 0.0019 28.8 6.0 96 4-102 56-164 (172)
163 PRK14953 DNA polymerase III su 36.3 1.1E+02 0.0024 34.0 7.5 96 5-102 118-218 (486)
164 PRK09111 DNA polymerase III su 35.3 91 0.002 35.6 6.8 95 6-102 132-231 (598)
165 PRK06090 DNA polymerase III su 34.0 2.1E+02 0.0046 29.7 8.7 89 6-104 108-201 (319)
166 PRK00149 dnaA chromosomal repl 33.4 65 0.0014 35.4 5.2 114 9-124 214-349 (450)
167 PRK06964 DNA polymerase III su 32.4 1.1E+02 0.0024 32.1 6.4 90 5-104 131-225 (342)
168 PRK07993 DNA polymerase III su 32.3 93 0.002 32.6 5.9 91 5-102 107-202 (334)
169 PRK14969 DNA polymerase III su 31.9 1.4E+02 0.0031 33.5 7.6 93 5-99 118-215 (527)
170 PRK04132 replication factor C 31.8 1.7E+02 0.0036 34.9 8.3 95 6-102 630-729 (846)
171 PRK14948 DNA polymerase III su 30.0 1.4E+02 0.003 34.4 7.1 97 5-103 120-221 (620)
172 PRK12422 chromosomal replicati 29.1 3.4E+02 0.0073 29.8 9.7 86 9-96 205-305 (445)
173 KOG0741 AAA+-type ATPase [Post 29.0 2E+02 0.0044 31.7 7.5 85 6-94 598-704 (744)
174 PRK14088 dnaA chromosomal repl 28.9 1E+02 0.0023 33.7 5.8 88 8-99 196-300 (440)
175 PRK14952 DNA polymerase III su 28.0 1.4E+02 0.0031 33.9 6.7 99 5-105 117-221 (584)
176 smart00368 LRR_RI Leucine rich 27.0 50 0.0011 20.0 1.7 12 355-366 3-14 (28)
177 PRK06647 DNA polymerase III su 26.6 1.9E+02 0.0041 32.8 7.4 95 5-101 118-217 (563)
178 CHL00181 cbbX CbbX; Provisiona 26.2 1.6E+02 0.0035 30.0 6.3 66 8-74 124-210 (287)
179 PRK14958 DNA polymerase III su 25.3 1E+02 0.0022 34.4 5.0 95 5-101 118-217 (509)
180 cd00009 AAA The AAA+ (ATPases 23.1 46 0.001 29.1 1.5 41 5-45 83-131 (151)
181 PRK14965 DNA polymerase III su 23.0 94 0.002 35.4 4.2 98 5-104 118-221 (576)
182 cd00561 CobA_CobO_BtuR ATP:cor 22.2 50 0.0011 30.3 1.5 39 7-45 96-139 (159)
183 PRK05563 DNA polymerase III su 21.6 2.3E+02 0.0051 32.1 7.0 95 5-101 118-217 (559)
184 PRK14700 recombination factor 21.5 2E+02 0.0043 29.4 5.7 67 32-98 5-81 (300)
185 KOG3763 mRNA export factor TAP 21.2 57 0.0012 35.9 1.8 37 281-317 216-254 (585)
186 PF10236 DAP3: Mitochondrial r 20.0 2.2E+02 0.0048 29.4 5.9 48 54-101 258-306 (309)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.7e-71 Score=626.57 Aligned_cols=607 Identities=34% Similarity=0.508 Sum_probs=429.8
Q ss_pred cCCCceEEEEEcCCCCccccccccCCCCCCCCCcEEEEEecchhHHHh-cCC-eeEecCCCCHHHHHHHHHHHhCCC-CC
Q 004573 2 LKERKRYVLILDDVWKRFSLDEVGIPEPTVDNGCKLVLTTRLKEVARS-MGC-EVIPVDLLSEDEALRLFSKHVGDY-LL 78 (744)
Q Consensus 2 ll~~kr~LiVLDDv~~~~~~~~l~~~~~~~~~gsriivTTR~~~v~~~-~~~-~~~~l~~L~~~~~~~Lf~~~~~~~-~~ 78 (744)
+|++|||+|||||||++.+|+.++.|+|...+||+|++|||++.|+.. +++ ..++++.|+++|||.||++.||.. ..
T Consensus 257 ~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~ 336 (889)
T KOG4658|consen 257 LLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLG 336 (889)
T ss_pred HhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccccc
Confidence 578999999999999999999999999988889999999999999998 887 899999999999999999999876 33
Q ss_pred CCCCHHHHHHHHHHHhcCCcHHHHHHHHhhcCCCCHHHHHHHHHHHHhc-CCCCCCCccchhhhhhhhccCCCChhhhHH
Q 004573 79 RIPTIEPILKQVVEQCAGLPLAIVTVASSMKSEDDVDLWKNALNELKEN-STSVEGMGDEVIPRLKFSYDRLMDPKIKRC 157 (744)
Q Consensus 79 ~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~~w~~~l~~l~~~-~~~~~~~~~~i~~~l~~sy~~L~~~~~k~c 157 (744)
..+.++++|++||++|+|+|||++++|+.|+.+.+..+|+++.+.+... .....++.+.+.++|++|||+|| +++|.|
T Consensus 337 ~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~-~~lK~C 415 (889)
T KOG4658|consen 337 SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLP-EELKSC 415 (889)
T ss_pred ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhh-HHHHHH
Confidence 4456899999999999999999999999999999999999999988766 33334566889999999999999 899999
Q ss_pred HhhccCCCCCcccChHHHHHHHHHhCccccchhhhHHHHhHHHHHHHHHHcccccccCC---CcEEechHHHHHHHHHHh
Q 004573 158 FLYCALFPEDFDIPKEELIEYWIVEGLIDVMETRQAMHYKGLAILHKLKENCLLESAED---GKCVKMHDLVREMALDIT 234 (744)
Q Consensus 158 fl~~s~fp~~~~i~~~~Li~~wiaeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~---~~~~~mHdli~~~~~~i~ 234 (744)
|+|||+||+||.|+++.|+.+||||||+.+...+..++++|..|+.+|++++|++...+ ..+|+|||+|||+|.++|
T Consensus 416 FLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ia 495 (889)
T KOG4658|consen 416 FLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIA 495 (889)
T ss_pred HHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHh
Confidence 99999999999999999999999999999977788899999999999999999998753 378999999999999999
Q ss_pred c-----CCCceEEecCccccccccccccccccEEEeecccccccCCCCCCCCCCcccEEEcccCC--CCCCChhHHhcCC
Q 004573 235 T-----GSPRYLVEAGKFGALLLEEEWKDDVEKVSLMRCRITRIPSNFPSSGCRSLSTLLLQHNY--IEEIPEFFFEHLT 307 (744)
Q Consensus 235 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--l~~l~~~~~~~l~ 307 (744)
+ +++ .++..+......++......+|++++.++.+..++. ...+++|++|.+..|. +..++..+|..++
T Consensus 496 s~~~~~~e~-~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~---~~~~~~L~tLll~~n~~~l~~is~~ff~~m~ 571 (889)
T KOG4658|consen 496 SDFGKQEEN-QIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAG---SSENPKLRTLLLQRNSDWLLEISGEFFRSLP 571 (889)
T ss_pred ccccccccc-eEEECCcCccccccccchhheeEEEEeccchhhccC---CCCCCccceEEEeecchhhhhcCHHHHhhCc
Confidence 8 555 556655444555655555789999999999988887 3567799999999995 7889999999999
Q ss_pred CCcEEEcCCCCCCccCCccccCcccccEEeccCcccccCCc-CccCCCCccEEEccCCC-CcccccccccCCCCCEEecc
Q 004573 308 GLKILDLSGNSNLLRLPDSISGLINLTALMVHGCFRLRHVP-SLAKLSALKKLDLGGTE-IDVVPQGLEMLAHLTYLDLN 385 (744)
Q Consensus 308 ~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~l~~~~-~i~~l~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~l~ 385 (744)
.|++|||++|..+.++|++|++|.|||||+++++. ++.+| ++++|+.|.+|++..+. +..+|..+..|++||+|.+.
T Consensus 572 ~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 572 LLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred ceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence 99999999999999999999999999988888763 44444 56666666666666663 23333334446666666554
Q ss_pred CccccccCCCccCCCCCCcEEEcCccccccchhhhcccCCcEEEeeecCCcchHHhhhhhhccccceEEEEeeccccccc
Q 004573 386 WTRILQIPDGMLSNLSRIQHLRLDRVAFENAEDILRLMKLEIFGVRFDHLQDYHRYLSLQSRRRLSKYYFTVEKNAYTYA 465 (744)
Q Consensus 386 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~ 465 (744)
...... ....+.++.++.+|+.+.+...............
T Consensus 651 ~s~~~~--------------------~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~-------------------- 690 (889)
T KOG4658|consen 651 RSALSN--------------------DKLLLKELENLEHLENLSITISSVLLLEDLLGMT-------------------- 690 (889)
T ss_pred cccccc--------------------chhhHHhhhcccchhhheeecchhHhHhhhhhhH--------------------
Confidence 433100 0111133444555555544322210000000000
Q ss_pred ccccccccceEEEeeccCccccccccceeeeeccCCccccccCCCCCCcCCCcEEEEeecCCcceeecC--ccccch-hh
Q 004573 466 RGEWDKYVSLVELRICENSVVLPRDIQQLHFNVCGGMRSLRDVPSLKDTTDLRECVIYRCYEMEFVFCL--SSCYGI-LE 542 (744)
Q Consensus 466 ~~~~~~~~~~~~L~~~~~~~~~p~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~~-l~ 542 (744)
.+....+.+.+.+|...+. .+++..+.+|+.|.|.+|...+..... ...... |+
T Consensus 691 --------------------~L~~~~~~l~~~~~~~~~~---~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~ 747 (889)
T KOG4658|consen 691 --------------------RLRSLLQSLSIEGCSKRTL---ISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFP 747 (889)
T ss_pred --------------------HHHHHhHhhhhccccccee---ecccccccCcceEEEEcCCCchhhcccccccchhhhHH
Confidence 0001122222222221121 256788899999999999876533211 001111 55
Q ss_pred hhHHHHhcCccchhhHhhhhhhhhccccccCCCCCCCceeEEEEEEEEecCCCcccccCCCcccCCCCccEEEEccccch
Q 004573 543 TLEYLLLQRLVDLKAIFQIAEDEVNASSLRTQTPSPPNIVFRLKRLIMSDCGKIRKLFSPELLPSLQNLEEIQVKYCGGL 622 (744)
Q Consensus 543 ~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~l~~l~~L~~L~l~~c~~l 622 (744)
++..+.+.+|..++.+... ...++|+.|.+..|+.++...| ....+..++++.
T Consensus 748 ~l~~~~~~~~~~~r~l~~~------------------~f~~~L~~l~l~~~~~~e~~i~--~~k~~~~l~~~i------- 800 (889)
T KOG4658|consen 748 NLSKVSILNCHMLRDLTWL------------------LFAPHLTSLSLVSCRLLEDIIP--KLKALLELKELI------- 800 (889)
T ss_pred HHHHHHhhccccccccchh------------------hccCcccEEEEecccccccCCC--HHHHhhhcccEE-------
Confidence 5666655555444333210 0111555555555554444311 111122222211
Q ss_pred hhhhccCCCCcccccccccCCCCcccccCCcccee-cccccccccccccccceeccCccceEEeccCCCCcccCcccccc
Q 004573 623 EEIIAASDDDEEGENNEAAGNNSIKSLALPKLRVL-YLKELPNLMSICSRRSTLVCNSLETIVVLRCPEIKRLPVLLPHL 701 (744)
Q Consensus 623 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~lp~L~~L-~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~C~~L~~lP~~~~~L 701 (744)
..|+++..+ .+.+.+.++++... ...++.|+.+.|..||+++++|.... +
T Consensus 801 --------------------------~~f~~~~~l~~~~~l~~l~~i~~~--~l~~~~l~~~~ve~~p~l~~~P~~~~-~ 851 (889)
T KOG4658|consen 801 --------------------------LPFNKLEGLRMLCSLGGLPQLYWL--PLSFLKLEELIVEECPKLGKLPLLST-L 851 (889)
T ss_pred --------------------------ecccccccceeeecCCCCceeEec--ccCccchhheehhcCcccccCccccc-c
Confidence 345566666 46666666665543 45567789999999999999987531 1
Q ss_pred cCCCCCCCCccccccchhhhcccccCCccccccc
Q 004573 702 VNGQPLNPRSLRIDIDKDCWDALEWDDPNTKSLL 735 (744)
Q Consensus 702 ~~l~~~~~~l~~i~~~~~w~~~lew~~~~~~~~~ 735 (744)
..-.. .+.+ ....+.+|.++++|.+++.+..+
T Consensus 852 ~i~~~-~~~~-~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 852 TIVGC-EEKL-KEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred ceecc-ccce-eecCCccceeeEEehhhhhhhhc
Confidence 11100 0111 22344568899999999888776
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.6e-58 Score=555.38 Aligned_cols=598 Identities=20% Similarity=0.280 Sum_probs=438.2
Q ss_pred CCCceEEEEEcCCCCccccccccCCCCCCCCCcEEEEEecchhHHHhcCC-eeEecCCCCHHHHHHHHHHHhCCCCCCCC
Q 004573 3 KERKRYVLILDDVWKRFSLDEVGIPEPTVDNGCKLVLTTRLKEVARSMGC-EVIPVDLLSEDEALRLFSKHVGDYLLRIP 81 (744)
Q Consensus 3 l~~kr~LiVLDDv~~~~~~~~l~~~~~~~~~gsriivTTR~~~v~~~~~~-~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 81 (744)
+++||+||||||||+..+|+.+.....++++|||||||||+++++..+++ ++|+++.++++|||+||+++||....+..
T Consensus 293 L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~ 372 (1153)
T PLN03210 293 LKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPD 372 (1153)
T ss_pred HhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcH
Confidence 57899999999999999999998777788999999999999999998877 89999999999999999999998765666
Q ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCCCCCCccchhhhhhhhccCCCChhhhHHHhhc
Q 004573 82 TIEPILKQVVEQCAGLPLAIVTVASSMKSEDDVDLWKNALNELKENSTSVEGMGDEVIPRLKFSYDRLMDPKIKRCFLYC 161 (744)
Q Consensus 82 ~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~ 161 (744)
++.+++++||++|+|+||||+++|++|+++ +..+|++++++++... ..+|.++|++||++|+++..|.||+++
T Consensus 373 ~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~i 445 (1153)
T PLN03210 373 GFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHI 445 (1153)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCc------cHHHHHHHHHhhhccCccchhhhhhee
Confidence 789999999999999999999999999986 6789999999987643 368999999999999855699999999
Q ss_pred cCCCCCcccChHHHHHHHHHhCccccchhhhHHHHhHHHHHHHHHHcccccccCCCcEEechHHHHHHHHHHhcCCC---
Q 004573 162 ALFPEDFDIPKEELIEYWIVEGLIDVMETRQAMHYKGLAILHKLKENCLLESAEDGKCVKMHDLVREMALDITTGSP--- 238 (744)
Q Consensus 162 s~fp~~~~i~~~~Li~~wiaeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~mHdli~~~~~~i~~~~~--- 238 (744)
|+||.++.++ .+..|++.+.... ...++.|+++||++... ..++|||++|+||+++++++.
T Consensus 446 a~ff~~~~~~---~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~~--~~~~MHdLl~~~~r~i~~~~~~~~ 509 (1153)
T PLN03210 446 ACLFNGEKVN---DIKLLLANSDLDV-----------NIGLKNLVDKSLIHVRE--DIVEMHSLLQEMGKEIVRAQSNEP 509 (1153)
T ss_pred hhhcCCCCHH---HHHHHHHhcCCCc-----------hhChHHHHhcCCEEEcC--CeEEhhhHHHHHHHHHHHhhcCCC
Confidence 9999987553 4777888765432 22388999999998754 469999999999999987642
Q ss_pred ---ceEEecCcccccccccc--------------------------ccccccEEEeeccccc-------ccCCCCCCCC-
Q 004573 239 ---RYLVEAGKFGALLLEEE--------------------------WKDDVEKVSLMRCRIT-------RIPSNFPSSG- 281 (744)
Q Consensus 239 ---~~~~~~~~~~~~~~~~~--------------------------~~~~~~~l~l~~~~~~-------~~~~~~~~~~- 281 (744)
.+++........+.... ...+++.+.+..+... .+|..+ ..
T Consensus 510 ~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~--~~l 587 (1153)
T PLN03210 510 GEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGF--DYL 587 (1153)
T ss_pred CcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcch--hhc
Confidence 23333222111111111 1233444444332211 122221 12
Q ss_pred CCcccEEEcccCCCCCCChhHHhcCCCCcEEEcCCCCCCccCCccccCcccccEEeccCcccccCCcCccCCCCccEEEc
Q 004573 282 CRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINLTALMVHGCFRLRHVPSLAKLSALKKLDL 361 (744)
Q Consensus 282 ~~~L~~L~l~~~~l~~l~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~l~~~~~i~~l~~L~~L~l 361 (744)
..+||.|.+.++.+..+|..+ .+.+|+.|+++++ .+..+|.++..+++|++|++++|..+..+|.++.+++|++|++
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L 664 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKL 664 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcC--CccCCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEe
Confidence 246889999888888888865 4789999999955 5888999999999999999999988999999999999999999
Q ss_pred cCC-CCcccccccccCCCCCEEeccCcc-ccccCCCccCCCCCCcEEEcCcccccc-chhhhcccCCcEEEeeecCCcch
Q 004573 362 GGT-EIDVVPQGLEMLAHLTYLDLNWTR-ILQIPDGMLSNLSRIQHLRLDRVAFEN-AEDILRLMKLEIFGVRFDHLQDY 438 (744)
Q Consensus 362 ~~~-~l~~lp~~i~~L~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~ 438 (744)
++| .+..+|..++++++|++|++++|. +..+|.+. ++++|+.|++++|.... .+. ...+|+.|.+..+.+...
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L~~n~i~~l 740 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPD--ISTNISWLDLDETAIEEF 740 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCcccccc--ccCCcCeeecCCCccccc
Confidence 998 677999999999999999999874 66777652 79999999999885432 222 246788888887776554
Q ss_pred HHhhhhhhccccceEEEEeecccccccccccccccceEEEeeccCccccccccceeeeeccCCccccccCCCCCCcCCCc
Q 004573 439 HRYLSLQSRRRLSKYYFTVEKNAYTYARGEWDKYVSLVELRICENSVVLPRDIQQLHFNVCGGMRSLRDVPSLKDTTDLR 518 (744)
Q Consensus 439 ~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~ 518 (744)
+... ...+|..+.+...... ..... .. .........|++|+.|++.+|..+..++ .+++++++|+
T Consensus 741 P~~~---~l~~L~~L~l~~~~~~-~l~~~-~~--------~l~~~~~~~~~sL~~L~Ls~n~~l~~lP--~si~~L~~L~ 805 (1153)
T PLN03210 741 PSNL---RLENLDELILCEMKSE-KLWER-VQ--------PLTPLMTMLSPSLTRLFLSDIPSLVELP--SSIQNLHKLE 805 (1153)
T ss_pred cccc---cccccccccccccchh-hcccc-cc--------ccchhhhhccccchheeCCCCCCccccC--hhhhCCCCCC
Confidence 4322 1223333322111000 00000 00 0001122346789999999998777664 4578899999
Q ss_pred EEEEeecCCcceeecCccccchhhhhHHHHhcCccchhhHhhhhhhhhccccccCCCCCCCceeEEEEEEEEecCCCccc
Q 004573 519 ECVIYRCYEMEFVFCLSSCYGILETLEYLLLQRLVDLKAIFQIAEDEVNASSLRTQTPSPPNIVFRLKRLIMSDCGKIRK 598 (744)
Q Consensus 519 ~L~l~~c~~l~~l~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~ 598 (744)
.|.|++|..++.+|... .+++|+.|++++|..+..++.. ..+|+.|++.+ ..++.
T Consensus 806 ~L~Ls~C~~L~~LP~~~----~L~sL~~L~Ls~c~~L~~~p~~--------------------~~nL~~L~Ls~-n~i~~ 860 (1153)
T PLN03210 806 HLEIENCINLETLPTGI----NLESLESLDLSGCSRLRTFPDI--------------------STNISDLNLSR-TGIEE 860 (1153)
T ss_pred EEECCCCCCcCeeCCCC----CccccCEEECCCCCcccccccc--------------------ccccCEeECCC-CCCcc
Confidence 99999999999887654 3789999999999887766431 11677788777 36666
Q ss_pred ccCCCcccCCCCccEEEEccccchhhhhccCCCCcccccccccCCCCcccccCCccceecccccccccccccccc-----
Q 004573 599 LFSPELLPSLQNLEEIQVKYCGGLEEIIAASDDDEEGENNEAAGNNSIKSLALPKLRVLYLKELPNLMSICSRRS----- 673 (744)
Q Consensus 599 l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~lp~L~~L~l~~c~~L~~l~~~~~----- 673 (744)
+ |..+..+++|++|++.+|+++..++... ..+++|+.|.+++|++|++++....
T Consensus 861 i--P~si~~l~~L~~L~L~~C~~L~~l~~~~-------------------~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~ 919 (1153)
T PLN03210 861 V--PWWIEKFSNLSFLDMNGCNNLQRVSLNI-------------------SKLKHLETVDFSDCGALTEASWNGSPSEVA 919 (1153)
T ss_pred C--hHHHhcCCCCCEEECCCCCCcCccCccc-------------------ccccCCCeeecCCCcccccccCCCCchhhh
Confidence 5 3346677788888888888887765322 2467788888888887775542100
Q ss_pred ------eeccCccceEEeccCCCCcc
Q 004573 674 ------TLVCNSLETIVVLRCPEIKR 693 (744)
Q Consensus 674 ------~~~~~sL~~L~i~~C~~L~~ 693 (744)
...+|+...+.+.+|.+|..
T Consensus 920 ~~~~n~~~~~p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 920 MATDNIHSKLPSTVCINFINCFNLDQ 945 (1153)
T ss_pred hhcccccccCCchhccccccccCCCc
Confidence 01234445556667766653
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.97 E-value=8.8e-32 Score=278.22 Aligned_cols=184 Identities=41% Similarity=0.744 Sum_probs=149.0
Q ss_pred CCCceEEEEEcCCCCccccccccCCCCCCCCCcEEEEEecchhHHHhcCC--eeEecCCCCHHHHHHHHHHHhCCCC-CC
Q 004573 3 KERKRYVLILDDVWKRFSLDEVGIPEPTVDNGCKLVLTTRLKEVARSMGC--EVIPVDLLSEDEALRLFSKHVGDYL-LR 79 (744)
Q Consensus 3 l~~kr~LiVLDDv~~~~~~~~l~~~~~~~~~gsriivTTR~~~v~~~~~~--~~~~l~~L~~~~~~~Lf~~~~~~~~-~~ 79 (744)
++++|+||||||||+...|+.+..+++.+..||+||||||+..|+..++. ..|++++|+++||++||++.++... ..
T Consensus 98 L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 177 (287)
T PF00931_consen 98 LKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESES 177 (287)
T ss_dssp HCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS---
T ss_pred hccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 57889999999999999999998888777789999999999999987764 7999999999999999999997754 33
Q ss_pred CCCHHHHHHHHHHHhcCCcHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCCCCCCccchhhhhhhhccCCCChhhhHHHh
Q 004573 80 IPTIEPILKQVVEQCAGLPLAIVTVASSMKSEDDVDLWKNALNELKENSTSVEGMGDEVIPRLKFSYDRLMDPKIKRCFL 159 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl 159 (744)
.+...+.+++|+++|+|+||||+++|++|+.+.+..+|+.+++++........+....+..++.+||+.|| +++|.||+
T Consensus 178 ~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~-~~~~~~f~ 256 (287)
T PF00931_consen 178 PEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLP-DELRRCFL 256 (287)
T ss_dssp -TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSH-TCCHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCC-ccHHHHHh
Confidence 45667899999999999999999999999766677889999999887765434455789999999999998 69999999
Q ss_pred hccCCCCCcccChHHHHHHHHHhCcccc
Q 004573 160 YCALFPEDFDIPKEELIEYWIVEGLIDV 187 (744)
Q Consensus 160 ~~s~fp~~~~i~~~~Li~~wiaeg~i~~ 187 (744)
|||+||+++.|+++.|+++|+++|||..
T Consensus 257 ~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 257 YLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred hCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 9999999999999999999999999976
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=1.6e-23 Score=253.20 Aligned_cols=175 Identities=23% Similarity=0.335 Sum_probs=88.5
Q ss_pred ccccEEEeeccccc-ccCCCCCCCCCCcccEEEcccCCCC-CCChhHHhcCCCCcEEEcCCCCCCccCCccccCcccccE
Q 004573 258 DDVEKVSLMRCRIT-RIPSNFPSSGCRSLSTLLLQHNYIE-EIPEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINLTA 335 (744)
Q Consensus 258 ~~~~~l~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~ 335 (744)
.+++.+++++|.+. .+|.. ...+++|++|++++|.+. .+|.. +.++++|++|++++|.....+|..++++.+|++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~--~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPND--IGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred CCCCEEECcCCcccccCChH--HhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 34555555555543 22322 234555666666555443 23332 355555566665555544455555555555555
Q ss_pred EeccCcccccCCc-CccCCCCccEEEccCCCCc-ccccccccCCCCCEEeccCccccccCCCccCCCCCCcEEEcCcccc
Q 004573 336 LMVHGCFRLRHVP-SLAKLSALKKLDLGGTEID-VVPQGLEMLAHLTYLDLNWTRILQIPDGMLSNLSRIQHLRLDRVAF 413 (744)
Q Consensus 336 L~l~~~~~l~~~~-~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 413 (744)
|++++|.....+| .++++.+|++|++++|.+. .+|..++++++|++|++++|.+....+..+.++++|+.|++++|..
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence 5555554443444 3555555555555555444 4455555555555555555554432222345555555555555544
Q ss_pred ccc--hhhhcccCCcEEEeeecCC
Q 004573 414 ENA--EDILRLMKLEIFGVRFDHL 435 (744)
Q Consensus 414 ~~~--~~l~~l~~L~~L~l~~~~~ 435 (744)
... ..+.++++|+.|++..+.+
T Consensus 297 ~~~~p~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 297 SGEIPELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred ccCCChhHcCCCCCcEEECCCCcc
Confidence 322 3344455555555554433
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=5.2e-23 Score=248.63 Aligned_cols=176 Identities=26% Similarity=0.367 Sum_probs=122.8
Q ss_pred cccccEEEeecccccccCCCCCCCCCCcccEEEcccCCCC-CCChhHHhcCCCCcEEEcCCCCCCccCCccccCcccccE
Q 004573 257 KDDVEKVSLMRCRITRIPSNFPSSGCRSLSTLLLQHNYIE-EIPEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINLTA 335 (744)
Q Consensus 257 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~ 335 (744)
..+++++++++|.+.... +...+++|++|++++|.+. .+|.. ++++++|++|++++|.....+|..++++++|++
T Consensus 117 l~~L~~L~Ls~n~l~~~~---p~~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 192 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSI---PRGSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192 (968)
T ss_pred CCCCCEEECcCCcccccc---CccccCCCCEEECcCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence 456777777777654321 1245677778888777665 34443 477788888888777666677777788888888
Q ss_pred EeccCcccccCCc-CccCCCCccEEEccCCCCc-ccccccccCCCCCEEeccCccccccCCCccCCCCCCcEEEcCcccc
Q 004573 336 LMVHGCFRLRHVP-SLAKLSALKKLDLGGTEID-VVPQGLEMLAHLTYLDLNWTRILQIPDGMLSNLSRIQHLRLDRVAF 413 (744)
Q Consensus 336 L~l~~~~~l~~~~-~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 413 (744)
|++++|.....+| .++++.+|++|++++|.+. .+|..++++++|++|++++|.+....+..++++++|+.|++++|.+
T Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence 8887776555555 5777788888888877766 6777777888888888877777654444477788888888877766
Q ss_pred ccc--hhhhcccCCcEEEeeecCCc
Q 004573 414 ENA--EDILRLMKLEIFGVRFDHLQ 436 (744)
Q Consensus 414 ~~~--~~l~~l~~L~~L~l~~~~~~ 436 (744)
... ..+.++++|+.|+++.+.+.
T Consensus 273 ~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 273 SGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred eccCchhHhhccCcCEEECcCCeec
Confidence 543 56677777888877766543
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=2.5e-19 Score=216.66 Aligned_cols=348 Identities=23% Similarity=0.307 Sum_probs=244.2
Q ss_pred cccccEEEeecccccccCCCCCCCCCCcccEEEcccCCCCCCChhHHhcCCCCcEEEcCCCCCCccCCccccCcccccEE
Q 004573 257 KDDVEKVSLMRCRITRIPSNFPSSGCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINLTAL 336 (744)
Q Consensus 257 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L 336 (744)
..+++.+.+.++.+..+|..+ ...+|+.|++.++.+..++..+ ..+++|++|+|+++..+..+|. ++.+++|++|
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f---~~~~L~~L~L~~s~l~~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L 662 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNF---RPENLVKLQMQGSKLEKLWDGV-HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETL 662 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcC---CccCCcEEECcCcccccccccc-ccCCCCCEEECCCCCCcCcCCc-cccCCcccEE
Confidence 457899999999999999855 4689999999999999988876 7899999999998888888886 8999999999
Q ss_pred eccCcccccCCc-CccCCCCccEEEccCC-CCcccccccccCCCCCEEeccCccc-cccCCCccCCCCCCcEEEcCcccc
Q 004573 337 MVHGCFRLRHVP-SLAKLSALKKLDLGGT-EIDVVPQGLEMLAHLTYLDLNWTRI-LQIPDGMLSNLSRIQHLRLDRVAF 413 (744)
Q Consensus 337 ~l~~~~~l~~~~-~i~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~ 413 (744)
++.+|..+..+| .++++.+|++|++++| .+..+|..+ ++++|++|++++|.. ..+|. ..++|+.|+++++.+
T Consensus 663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i 737 (1153)
T PLN03210 663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAI 737 (1153)
T ss_pred EecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCcc
Confidence 999999998888 6999999999999998 788999877 899999999999864 34442 246789999999987
Q ss_pred ccchhhhcccCCcEEEeeecCCcchHHhhhhhhccccceEEEEeecccccccccccccccceEEEeeccCcccc------
Q 004573 414 ENAEDILRLMKLEIFGVRFDHLQDYHRYLSLQSRRRLSKYYFTVEKNAYTYARGEWDKYVSLVELRICENSVVL------ 487 (744)
Q Consensus 414 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~------ 487 (744)
..++....+.+|+.|.+..+......... ..+.. ........++.+.+..|.....+
T Consensus 738 ~~lP~~~~l~~L~~L~l~~~~~~~l~~~~-----~~l~~------------~~~~~~~sL~~L~Ls~n~~l~~lP~si~~ 800 (1153)
T PLN03210 738 EEFPSNLRLENLDELILCEMKSEKLWERV-----QPLTP------------LMTMLSPSLTRLFLSDIPSLVELPSSIQN 800 (1153)
T ss_pred ccccccccccccccccccccchhhccccc-----cccch------------hhhhccccchheeCCCCCCccccChhhhC
Confidence 77655446778887777643221110000 00000 00000111222223333222222
Q ss_pred ccccceeeeeccCCccccccCCCCCCcCCCcEEEEeecCCcceeecCccccchhhhhHHHHhcCccchhhHhhhhhhhhc
Q 004573 488 PRDIQQLHFNVCGGMRSLRDVPSLKDTTDLRECVIYRCYEMEFVFCLSSCYGILETLEYLLLQRLVDLKAIFQIAEDEVN 567 (744)
Q Consensus 488 p~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~ 567 (744)
.++|+.|++.+|..++.+ |....+++|+.|.+++|..+..++.. .++|+.|++.+. +++.++.
T Consensus 801 L~~L~~L~Ls~C~~L~~L---P~~~~L~sL~~L~Ls~c~~L~~~p~~------~~nL~~L~Ls~n-~i~~iP~------- 863 (1153)
T PLN03210 801 LHKLEHLEIENCINLETL---PTGINLESLESLDLSGCSRLRTFPDI------STNISDLNLSRT-GIEEVPW------- 863 (1153)
T ss_pred CCCCCEEECCCCCCcCee---CCCCCccccCEEECCCCCcccccccc------ccccCEeECCCC-CCccChH-------
Confidence 346899999999988876 44447899999999999988766543 467888888763 3443322
Q ss_pred cccccCCCCCCCceeEEEEEEEEecCCCcccccCCCcccCCCCccEEEEccccchhhhhccCCCCcccccccccCCCCcc
Q 004573 568 ASSLRTQTPSPPNIVFRLKRLIMSDCGKIRKLFSPELLPSLQNLEEIQVKYCGGLEEIIAASDDDEEGENNEAAGNNSIK 647 (744)
Q Consensus 568 ~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 647 (744)
....+.+|+.|++.+|++|+.+++ .+..+++|+.+++++|.++.++............ . .+ .
T Consensus 864 ----------si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~---~-~n-~- 925 (1153)
T PLN03210 864 ----------WIEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALTEASWNGSPSEVAMA---T-DN-I- 925 (1153)
T ss_pred ----------HHhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCcccccccCCCCchhhhhh---c-cc-c-
Confidence 112233899999999999998733 4678899999999999999876432110000000 0 00 0
Q ss_pred cccCCccceeccccccccc
Q 004573 648 SLALPKLRVLYLKELPNLM 666 (744)
Q Consensus 648 ~~~lp~L~~L~l~~c~~L~ 666 (744)
...+|....+.+.+|.+|.
T Consensus 926 ~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 926 HSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred cccCCchhccccccccCCC
Confidence 0235666667777887765
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.77 E-value=7.7e-21 Score=196.58 Aligned_cols=187 Identities=20% Similarity=0.292 Sum_probs=143.7
Q ss_pred ccccccc-cccccccEEEeecccccccCCCCCCCCCCcccEEEcccCCCC--CCChhHHhcCCCCcEEEcCCCCCCccCC
Q 004573 248 GALLLEE-EWKDDVEKVSLMRCRITRIPSNFPSSGCRSLSTLLLQHNYIE--EIPEFFFEHLTGLKILDLSGNSNLLRLP 324 (744)
Q Consensus 248 ~~~~~~~-~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~--~l~~~~~~~l~~L~~L~l~~~~~~~~lp 324 (744)
...+|+. ....++.++++.+|++..+.... +.++.||.+++..|+++ .+|+.+| .+..|.+||||.| .+.+.|
T Consensus 44 L~~vPeEL~~lqkLEHLs~~HN~L~~vhGEL--s~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShN-qL~EvP 119 (1255)
T KOG0444|consen 44 LEQVPEELSRLQKLEHLSMAHNQLISVHGEL--SDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHN-QLREVP 119 (1255)
T ss_pred hhhChHHHHHHhhhhhhhhhhhhhHhhhhhh--ccchhhHHHhhhccccccCCCCchhc-ccccceeeecchh-hhhhcc
Confidence 3444544 44568889999999888877644 67889999999888665 6888886 4899999999955 478899
Q ss_pred ccccCcccccEEeccCcccccCCcC--ccCCCCccEEEccCCCCcccccccccCCCCCEEeccCccccccCCCccCCCCC
Q 004573 325 DSISGLINLTALMVHGCFRLRHVPS--LAKLSALKKLDLGGTEIDVVPQGLEMLAHLTYLDLNWTRILQIPDGMLSNLSR 402 (744)
Q Consensus 325 ~~i~~l~~L~~L~l~~~~~l~~~~~--i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~l~~ 402 (744)
..+..-+++-+|+|+++ .+..+|. +-+|.-|-+|||++|+++.+|+.+..|.+|++|.+++|.+..+.-..+..+++
T Consensus 120 ~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmts 198 (1255)
T KOG0444|consen 120 TNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTS 198 (1255)
T ss_pred hhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchh
Confidence 98999999999999986 5667773 77889999999999999999999999999999999998776554444556777
Q ss_pred CcEEEcCccccccc---hhhhcccCCcEEEeeecCCcchH
Q 004573 403 IQHLRLDRVAFENA---EDILRLMKLEIFGVRFDHLQDYH 439 (744)
Q Consensus 403 L~~L~l~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~ 439 (744)
|+.|++++.+-+.. ..+..+.+|..++++.+.++..+
T Consensus 199 L~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP 238 (1255)
T KOG0444|consen 199 LSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP 238 (1255)
T ss_pred hhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch
Confidence 88888887644322 55667777777777766655433
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.77 E-value=1.5e-19 Score=186.03 Aligned_cols=380 Identities=20% Similarity=0.221 Sum_probs=234.4
Q ss_pred ccccEEEeecccccccCCCCCCC-CCCcccEEEcccCCCCCCChhHHhcCCCCcEEEcCCCCCCccCCccccCcccccEE
Q 004573 258 DDVEKVSLMRCRITRIPSNFPSS-GCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINLTAL 336 (744)
Q Consensus 258 ~~~~~l~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L 336 (744)
-..+.++.+.+.+..+...--.+ -...-++|++++|.+..+...+|.++++|+.+.+.. +.+..+|...+...||+.|
T Consensus 52 c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L 130 (873)
T KOG4194|consen 52 CNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNK-NELTRIPRFGHESGHLEKL 130 (873)
T ss_pred CCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeecc-chhhhcccccccccceeEE
Confidence 34566677776666543211111 223567899999999999888889999999999994 4588999977778889999
Q ss_pred eccCcccccCCc--CccCCCCccEEEccCCCCcccccc-cccCCCCCEEeccCccccccCCCccCCCCCCcEEEcCcccc
Q 004573 337 MVHGCFRLRHVP--SLAKLSALKKLDLGGTEIDVVPQG-LEMLAHLTYLDLNWTRILQIPDGMLSNLSRIQHLRLDRVAF 413 (744)
Q Consensus 337 ~l~~~~~l~~~~--~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 413 (744)
+|.++ .+..+. .+.-+..|+.|||+.|.|.++|.. +..-.++++|++.+|.|+.+..+.|..+.+|.+|.+++|.+
T Consensus 131 ~L~~N-~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri 209 (873)
T KOG4194|consen 131 DLRHN-LISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI 209 (873)
T ss_pred eeecc-ccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc
Confidence 99987 455554 488889999999999999988764 56667899999999999999888899999999999999998
Q ss_pred ccc--hhhhcccCCcEEEeeecCCcchHHhhhhhhccccceEEEEeecccccccccccccccceEEEeeccCcccccccc
Q 004573 414 ENA--EDILRLMKLEIFGVRFDHLQDYHRYLSLQSRRRLSKYYFTVEKNAYTYARGEWDKYVSLVELRICENSVVLPRDI 491 (744)
Q Consensus 414 ~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p~~L 491 (744)
..+ ..+.+|++|+.|++..+.+... +...+..+.+|+.+.+..... .....+.+-. ...+
T Consensus 210 ttLp~r~Fk~L~~L~~LdLnrN~iriv-e~ltFqgL~Sl~nlklqrN~I-~kL~DG~Fy~----------------l~km 271 (873)
T KOG4194|consen 210 TTLPQRSFKRLPKLESLDLNRNRIRIV-EGLTFQGLPSLQNLKLQRNDI-SKLDDGAFYG----------------LEKM 271 (873)
T ss_pred cccCHHHhhhcchhhhhhccccceeee-hhhhhcCchhhhhhhhhhcCc-ccccCcceee----------------eccc
Confidence 887 6677799999999887765432 122222222232222211100 0001111111 1234
Q ss_pred ceeeeeccCCccccccCCCCCCcCCCcEEEEeecCCcceeecCccccchhhhhHHHHhcCccchhhHhhhhhhhhccccc
Q 004573 492 QQLHFNVCGGMRSLRDVPSLKDTTDLRECVIYRCYEMEFVFCLSSCYGILETLEYLLLQRLVDLKAIFQIAEDEVNASSL 571 (744)
Q Consensus 492 ~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~ 571 (744)
++|++.... +..+.. .++-+++.|+.|+++... ++.+....+ ...++|+.|++++- .+.++..
T Consensus 272 e~l~L~~N~-l~~vn~-g~lfgLt~L~~L~lS~Na-I~rih~d~W--sftqkL~~LdLs~N-~i~~l~~----------- 334 (873)
T KOG4194|consen 272 EHLNLETNR-LQAVNE-GWLFGLTSLEQLDLSYNA-IQRIHIDSW--SFTQKLKELDLSSN-RITRLDE----------- 334 (873)
T ss_pred ceeecccch-hhhhhc-ccccccchhhhhccchhh-hheeecchh--hhcccceeEecccc-ccccCCh-----------
Confidence 444443322 111111 344556667777666532 444433322 22466666666542 2222211
Q ss_pred cCCCCCCCceeE-EEEEEEEecCCCcccccCCCcccCCCCccEEEEccccchhhhhccCCCCcccccccccCCCCccccc
Q 004573 572 RTQTPSPPNIVF-RLKRLIMSDCGKIRKLFSPELLPSLQNLEEIQVKYCGGLEEIIAASDDDEEGENNEAAGNNSIKSLA 650 (744)
Q Consensus 572 ~~~~~~~~~~~~-~L~~L~l~~C~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (744)
.+.... .|++|.+++ +++..+ ..+.+..+++|++|++++. .+.-.+.. ......+
T Consensus 335 ------~sf~~L~~Le~LnLs~-Nsi~~l-~e~af~~lssL~~LdLr~N-~ls~~IED---------------aa~~f~g 390 (873)
T KOG4194|consen 335 ------GSFRVLSQLEELNLSH-NSIDHL-AEGAFVGLSSLHKLDLRSN-ELSWCIED---------------AAVAFNG 390 (873)
T ss_pred ------hHHHHHHHhhhhcccc-cchHHH-HhhHHHHhhhhhhhcCcCC-eEEEEEec---------------chhhhcc
Confidence 000111 667777776 466555 2334556677777777652 22111100 0111135
Q ss_pred CCccceecccccccccccccccceeccCccceEEeccCCCCccc-Ccccccc
Q 004573 651 LPKLRVLYLKELPNLMSICSRRSTLVCNSLETIVVLRCPEIKRL-PVLLPHL 701 (744)
Q Consensus 651 lp~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~C~~L~~l-P~~~~~L 701 (744)
+|+|++|.+.+ .+|++++.. ....+++||.|++.+-+ +.++ |..+.++
T Consensus 391 l~~LrkL~l~g-Nqlk~I~kr-Afsgl~~LE~LdL~~Na-iaSIq~nAFe~m 439 (873)
T KOG4194|consen 391 LPSLRKLRLTG-NQLKSIPKR-AFSGLEALEHLDLGDNA-IASIQPNAFEPM 439 (873)
T ss_pred chhhhheeecC-ceeeecchh-hhccCcccceecCCCCc-ceeecccccccc
Confidence 89999999998 489999853 34457899999998755 5555 5544333
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.71 E-value=1.2e-18 Score=179.45 Aligned_cols=304 Identities=22% Similarity=0.307 Sum_probs=200.6
Q ss_pred cccccEEEeecccccccCCCCCCCCCCcccEEEcccCCCCCCChhHHhcCCCCcEEEcCCCCCCccCCccccCcccccEE
Q 004573 257 KDDVEKVSLMRCRITRIPSNFPSSGCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINLTAL 336 (744)
Q Consensus 257 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L 336 (744)
..+++++++.+|.|.++.+.- ...++.||+||++.|.|..++...|..-.++++|+|++|....---..|..+.+|.+|
T Consensus 124 sghl~~L~L~~N~I~sv~se~-L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEE-LSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL 202 (873)
T ss_pred ccceeEEeeeccccccccHHH-HHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheee
Confidence 346788888888777765422 3567788888888888887777666666778888888665433334567777788888
Q ss_pred eccCcccccCCc--CccCCCCccEEEccCCCCccc-ccccccCCCCCEEeccCccccccCCCccCCCCCCcEEEcCcccc
Q 004573 337 MVHGCFRLRHVP--SLAKLSALKKLDLGGTEIDVV-PQGLEMLAHLTYLDLNWTRILQIPDGMLSNLSRIQHLRLDRVAF 413 (744)
Q Consensus 337 ~l~~~~~l~~~~--~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 413 (744)
.|+.+ .++.+| .+.+|++|+.|+|..|.|... -..+..|++|+.|.+..|.+..+.+++|..+.++++|++..|++
T Consensus 203 kLsrN-rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 203 KLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred ecccC-cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence 88876 445555 577788888888888877655 34577788888888888888888888888888888888888877
Q ss_pred ccc--hhhhcccCCcEEEeeecCCcchHHhhhhhhccccceEEEEeecccccccccccccccceEEEeeccCcccccccc
Q 004573 414 ENA--EDILRLMKLEIFGVRFDHLQDYHRYLSLQSRRRLSKYYFTVEKNAYTYARGEWDKYVSLVELRICENSVVLPRDI 491 (744)
Q Consensus 414 ~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p~~L 491 (744)
..+ ..+.+|+.|+.|+++++.++.+.. ....+-+.|
T Consensus 282 ~~vn~g~lfgLt~L~~L~lS~NaI~rih~------------------------------------------d~WsftqkL 319 (873)
T KOG4194|consen 282 QAVNEGWLFGLTSLEQLDLSYNAIQRIHI------------------------------------------DSWSFTQKL 319 (873)
T ss_pred hhhhcccccccchhhhhccchhhhheeec------------------------------------------chhhhcccc
Confidence 766 667788888888888776543221 111122345
Q ss_pred ceeeeeccCCccccccCCCCCCcCCCcEEEEeecCCcceeecCccccchhhhhHHHHhcCccchhhHhhhhhhhhccccc
Q 004573 492 QQLHFNVCGGMRSLRDVPSLKDTTDLRECVIYRCYEMEFVFCLSSCYGILETLEYLLLQRLVDLKAIFQIAEDEVNASSL 571 (744)
Q Consensus 492 ~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~ 571 (744)
+.|+++... ++.+.. .++..+..|++|.++... +..+... .+..+.+|++|++++-. + +|.. .
T Consensus 320 ~~LdLs~N~-i~~l~~-~sf~~L~~Le~LnLs~Ns-i~~l~e~--af~~lssL~~LdLr~N~-l-s~~I-E--------- 382 (873)
T KOG4194|consen 320 KELDLSSNR-ITRLDE-GSFRVLSQLEELNLSHNS-IDHLAEG--AFVGLSSLHKLDLRSNE-L-SWCI-E--------- 382 (873)
T ss_pred eeEeccccc-cccCCh-hHHHHHHHhhhhcccccc-hHHHHhh--HHHHhhhhhhhcCcCCe-E-EEEE-e---------
Confidence 556555432 333321 345567778888887643 3332221 12236778888776521 0 1100 0
Q ss_pred cCCCCCCCceeEEEEEEEEecCCCcccccCCCcccCCCCccEEEEccccchhhhh
Q 004573 572 RTQTPSPPNIVFRLKRLIMSDCGKIRKLFSPELLPSLQNLEEIQVKYCGGLEEII 626 (744)
Q Consensus 572 ~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~ 626 (744)
....+..++.+|++|.+.+ ++|+.+ |...+..|++||.|++.+ +.+.+|.
T Consensus 383 --Daa~~f~gl~~LrkL~l~g-Nqlk~I-~krAfsgl~~LE~LdL~~-NaiaSIq 432 (873)
T KOG4194|consen 383 --DAAVAFNGLPSLRKLRLTG-NQLKSI-PKRAFSGLEALEHLDLGD-NAIASIQ 432 (873)
T ss_pred --cchhhhccchhhhheeecC-ceeeec-chhhhccCcccceecCCC-Ccceeec
Confidence 0111223445899999999 689887 555678899999999976 5555554
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.71 E-value=6.9e-19 Score=182.31 Aligned_cols=179 Identities=26% Similarity=0.335 Sum_probs=146.5
Q ss_pred cccccccEEEeecccccccCCCCCCCCCCcccEEEcccCCCCCCChhHHhcCCCCcEEEcCCCCCCccCCccccCccccc
Q 004573 255 EWKDDVEKVSLMRCRITRIPSNFPSSGCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINLT 334 (744)
Q Consensus 255 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~ 334 (744)
...+++..+++++|.+.++|... ...+++-+|++++|+|..+|...|-++..|-+|||| ++.++.+|+.+..|.+|+
T Consensus 100 F~l~dLt~lDLShNqL~EvP~~L--E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS-~NrLe~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 100 FRLKDLTILDLSHNQLREVPTNL--EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLS-NNRLEMLPPQIRRLSMLQ 176 (1255)
T ss_pred cccccceeeecchhhhhhcchhh--hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccc-cchhhhcCHHHHHHhhhh
Confidence 34578899999999999999855 677899999999999999999999999999999999 556899999999999999
Q ss_pred EEeccCccccc-CCcCccCCCCccEEEccCC--CCcccccccccCCCCCEEeccCccccccCCCccCCCCCCcEEEcCcc
Q 004573 335 ALMVHGCFRLR-HVPSLAKLSALKKLDLGGT--EIDVVPQGLEMLAHLTYLDLNWTRILQIPDGMLSNLSRIQHLRLDRV 411 (744)
Q Consensus 335 ~L~l~~~~~l~-~~~~i~~l~~L~~L~l~~~--~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 411 (744)
+|+|+++.... .+..+..+.+|++|.++++ .+..+|.++..|.+|+.++++.|++..+|.- +-++++|+.|++++|
T Consensus 177 tL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPec-ly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 177 TLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPEC-LYKLRNLRRLNLSGN 255 (1255)
T ss_pred hhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHH-HhhhhhhheeccCcC
Confidence 99999986432 1224455678899999998 4558899999999999999999998888865 678999999999999
Q ss_pred ccccc-hhhhcccCCcEEEeeecCCcc
Q 004573 412 AFENA-EDILRLMKLEIFGVRFDHLQD 437 (744)
Q Consensus 412 ~~~~~-~~l~~l~~L~~L~l~~~~~~~ 437 (744)
.++.+ ...+...+|+.|+++.+.+..
T Consensus 256 ~iteL~~~~~~W~~lEtLNlSrNQLt~ 282 (1255)
T KOG0444|consen 256 KITELNMTEGEWENLETLNLSRNQLTV 282 (1255)
T ss_pred ceeeeeccHHHHhhhhhhccccchhcc
Confidence 88776 455566777777777665443
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.65 E-value=2.5e-19 Score=176.82 Aligned_cols=175 Identities=26% Similarity=0.421 Sum_probs=148.7
Q ss_pred cccEEEeecccccccCCCCCCCCCCcccEEEcccCCCCCCChhHHhcCCCCcEEEcCCCCCCccCCccccCcccccEEec
Q 004573 259 DVEKVSLMRCRITRIPSNFPSSGCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINLTALMV 338 (744)
Q Consensus 259 ~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l 338 (744)
.+..+...+|.+..+|..+ ..+.++..+++.+|.+..+|+.... ++.|+.||... ..++.+|+.++.+..|..|++
T Consensus 138 ~l~dl~~~~N~i~slp~~~--~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL 213 (565)
T KOG0472|consen 138 DLEDLDATNNQISSLPEDM--VNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNS-NLLETLPPELGGLESLELLYL 213 (565)
T ss_pred hhhhhhccccccccCchHH--HHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccch-hhhhcCChhhcchhhhHHHHh
Confidence 4455666777888888754 5678888899999999999988765 99999999884 458899999999999999999
Q ss_pred cCcccccCCcCccCCCCccEEEccCCCCcccccccc-cCCCCCEEeccCccccccCCCccCCCCCCcEEEcCccccccc-
Q 004573 339 HGCFRLRHVPSLAKLSALKKLDLGGTEIDVVPQGLE-MLAHLTYLDLNWTRILQIPDGMLSNLSRIQHLRLDRVAFENA- 416 (744)
Q Consensus 339 ~~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~-~L~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~- 416 (744)
..+ ++..+|.|..+..|.+|+++.|.++.+|..++ +|.+|..|+++.|++++.|.+ +..+.+|..|++++|.+..+
T Consensus 214 ~~N-ki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde-~clLrsL~rLDlSNN~is~Lp 291 (565)
T KOG0472|consen 214 RRN-KIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDE-ICLLRSLERLDLSNNDISSLP 291 (565)
T ss_pred hhc-ccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchH-HHHhhhhhhhcccCCccccCC
Confidence 987 67788899999999999999999999998876 899999999999999999988 57899999999999988887
Q ss_pred hhhhcccCCcEEEeeecCCcchHH
Q 004573 417 EDILRLMKLEIFGVRFDHLQDYHR 440 (744)
Q Consensus 417 ~~l~~l~~L~~L~l~~~~~~~~~~ 440 (744)
..++++ +|+.|.+.+++......
T Consensus 292 ~sLgnl-hL~~L~leGNPlrTiRr 314 (565)
T KOG0472|consen 292 YSLGNL-HLKFLALEGNPLRTIRR 314 (565)
T ss_pred cccccc-eeeehhhcCCchHHHHH
Confidence 788888 89999999888765443
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.61 E-value=4.7e-18 Score=167.84 Aligned_cols=217 Identities=21% Similarity=0.306 Sum_probs=161.2
Q ss_pred cccccEEEeecccccccCCCCCCCCCCcccEEEcccCCCCCCChhHHhcCCCCcEEEcCCCCCCccCCccccCcccccEE
Q 004573 257 KDDVEKVSLMRCRITRIPSNFPSSGCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINLTAL 336 (744)
Q Consensus 257 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L 336 (744)
...+..++.++|.+..+|..+ ....+++.++.++|.+..+++++ +.+..|..|+.. +..+..+|.+++.+..|..|
T Consensus 90 l~~l~~l~vs~n~ls~lp~~i--~s~~~l~~l~~s~n~~~el~~~i-~~~~~l~dl~~~-~N~i~slp~~~~~~~~l~~l 165 (565)
T KOG0472|consen 90 LEALKSLNVSHNKLSELPEQI--GSLISLVKLDCSSNELKELPDSI-GRLLDLEDLDAT-NNQISSLPEDMVNLSKLSKL 165 (565)
T ss_pred HHHHHHhhcccchHhhccHHH--hhhhhhhhhhccccceeecCchH-HHHhhhhhhhcc-ccccccCchHHHHHHHHHHh
Confidence 345667777888888887744 56778888888888888888876 567778888877 55678888888888888888
Q ss_pred eccCcccccCCcCccCCCCccEEEccCCCCcccccccccCCCCCEEeccCccccccCCCccCCCCCCcEEEcCccccccc
Q 004573 337 MVHGCFRLRHVPSLAKLSALKKLDLGGTEIDVVPQGLEMLAHLTYLDLNWTRILQIPDGMLSNLSRIQHLRLDRVAFENA 416 (744)
Q Consensus 337 ~l~~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 416 (744)
++.++.....+|..-+++.|++||...|-++.+|+.++.|.+|..|+++.|.+..+|. |+.+..|.+|+++.|.+..+
T Consensus 166 ~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe--f~gcs~L~Elh~g~N~i~~l 243 (565)
T KOG0472|consen 166 DLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPE--FPGCSLLKELHVGENQIEML 243 (565)
T ss_pred hccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCC--CCccHHHHHHHhcccHHHhh
Confidence 8888765556665555888888888888888888888888888888888888888884 78888888888888887766
Q ss_pred --hhhhcccCCcEEEeeecCCcchHHhhhhhhccccceEEEEeecccccccccccccccceEEEeeccCcccccccccee
Q 004573 417 --EDILRLMKLEIFGVRFDHLQDYHRYLSLQSRRRLSKYYFTVEKNAYTYARGEWDKYVSLVELRICENSVVLPRDIQQL 494 (744)
Q Consensus 417 --~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p~~L~~L 494 (744)
+.+.++.++..|+++.+...+.+.-. .+..+|..|
T Consensus 244 pae~~~~L~~l~vLDLRdNklke~Pde~-------------------------------------------clLrsL~rL 280 (565)
T KOG0472|consen 244 PAEHLKHLNSLLVLDLRDNKLKEVPDEI-------------------------------------------CLLRSLERL 280 (565)
T ss_pred HHHHhcccccceeeeccccccccCchHH-------------------------------------------HHhhhhhhh
Confidence 44558888888888877766544321 122345566
Q ss_pred eeeccCCccccccCCCCCCcCCCcEEEEeecC
Q 004573 495 HFNVCGGMRSLRDVPSLKDTTDLRECVIYRCY 526 (744)
Q Consensus 495 ~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~ 526 (744)
++++.. +++++ .++|++ +|+.|.+.|.+
T Consensus 281 DlSNN~-is~Lp--~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 281 DLSNND-ISSLP--YSLGNL-HLKFLALEGNP 308 (565)
T ss_pred cccCCc-cccCC--cccccc-eeeehhhcCCc
Confidence 665533 33333 567788 78888887765
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.55 E-value=2.3e-16 Score=171.56 Aligned_cols=130 Identities=22% Similarity=0.216 Sum_probs=84.7
Q ss_pred cccceeeeeccCCccccccCCCCCCcCCCcEEEEeecCCcceeecCccccchhhhhHHHHhcCccchhhHhhhhhhhhcc
Q 004573 489 RDIQQLHFNVCGGMRSLRDVPSLKDTTDLRECVIYRCYEMEFVFCLSSCYGILETLEYLLLQRLVDLKAIFQIAEDEVNA 568 (744)
Q Consensus 489 ~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~ 568 (744)
+.|+.|++.+..--... +|.+.++.+||.|+++... +..++.. ....|+.||.|++++ .+|+.++...
T Consensus 359 ~~Lq~LylanN~Ltd~c--~p~l~~~~hLKVLhLsyNr-L~~fpas--~~~kle~LeeL~LSG-NkL~~Lp~tv------ 426 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSC--FPVLVNFKHLKVLHLSYNR-LNSFPAS--KLRKLEELEELNLSG-NKLTTLPDTV------ 426 (1081)
T ss_pred HHHHHHHHhcCcccccc--hhhhccccceeeeeecccc-cccCCHH--HHhchHHhHHHhccc-chhhhhhHHH------
Confidence 45777777765432222 2778899999999998753 4444433 334588888999987 3566665411
Q ss_pred ccccCCCCCCCceeEEEEEEEEecCCCcccccCCCcccCCCCccEEEEccccchhhhhccCCCCcccccccccCCCCccc
Q 004573 569 SSLRTQTPSPPNIVFRLKRLIMSDCGKIRKLFSPELLPSLQNLEEIQVKYCGGLEEIIAASDDDEEGENNEAAGNNSIKS 648 (744)
Q Consensus 569 ~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 648 (744)
..+..|+.|...+ +.|.. || .+..++.|+.+|++ |+++..+.....
T Consensus 427 -----------a~~~~L~tL~ahs-N~l~~-fP--e~~~l~qL~~lDlS-~N~L~~~~l~~~------------------ 472 (1081)
T KOG0618|consen 427 -----------ANLGRLHTLRAHS-NQLLS-FP--ELAQLPQLKVLDLS-CNNLSEVTLPEA------------------ 472 (1081)
T ss_pred -----------HhhhhhHHHhhcC-Cceee-ch--hhhhcCcceEEecc-cchhhhhhhhhh------------------
Confidence 2223677776665 35544 34 36678999999994 788887642221
Q ss_pred ccCCccceeccccccc
Q 004573 649 LALPKLRVLYLKELPN 664 (744)
Q Consensus 649 ~~lp~L~~L~l~~c~~ 664 (744)
.+-|+|+.|++++.+.
T Consensus 473 ~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 473 LPSPNLKYLDLSGNTR 488 (1081)
T ss_pred CCCcccceeeccCCcc
Confidence 2338999999998765
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=1e-15 Score=134.18 Aligned_cols=161 Identities=24% Similarity=0.428 Sum_probs=119.6
Q ss_pred cccccEEEeecccccccCCCCCCCCCCcccEEEcccCCCCCCChhHHhcCCCCcEEEcCCCCCCccCCccccCcccccEE
Q 004573 257 KDDVEKVSLMRCRITRIPSNFPSSGCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINLTAL 336 (744)
Q Consensus 257 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L 336 (744)
...+.++.+++|.++.+|..+ ..+.+|++|++++|.++++|..+ +.+++||.|++..| .+..+|..+|.++.|++|
T Consensus 32 ~s~ITrLtLSHNKl~~vppni--a~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmn-rl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNI--AELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMN-RLNILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCceeecCCcH--HHhhhhhhhhcccchhhhcChhh-hhchhhhheecchh-hhhcCccccCCCchhhhh
Confidence 456777778888887777755 56778888888888888888776 67888888888754 366778888888888888
Q ss_pred eccCcccc-cCCc-CccCCCCccEEEccCCCCcccccccccCCCCCEEeccCccccccCCCccCCCCCCcEEEcCccccc
Q 004573 337 MVHGCFRL-RHVP-SLAKLSALKKLDLGGTEIDVVPQGLEMLAHLTYLDLNWTRILQIPDGMLSNLSRIQHLRLDRVAFE 414 (744)
Q Consensus 337 ~l~~~~~l-~~~~-~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 414 (744)
|+.++..- ..+| .+-.+..|+.|.++.+.++.+|..+++|++|+.|.++.+.+.++|.. ++.++.|++|++.+|...
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQGNRLT 186 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhcccceee
Confidence 88765422 3455 46667778888888888888888888888888888888887777766 678888888888877766
Q ss_pred cc-hhhhcc
Q 004573 415 NA-EDILRL 422 (744)
Q Consensus 415 ~~-~~l~~l 422 (744)
.+ ++++++
T Consensus 187 vlppel~~l 195 (264)
T KOG0617|consen 187 VLPPELANL 195 (264)
T ss_pred ecChhhhhh
Confidence 55 444443
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=1.6e-15 Score=132.83 Aligned_cols=156 Identities=26% Similarity=0.362 Sum_probs=139.6
Q ss_pred CCCCcccEEEcccCCCCCCChhHHhcCCCCcEEEcCCCCCCccCCccccCcccccEEeccCcccccCCc-CccCCCCccE
Q 004573 280 SGCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINLTALMVHGCFRLRHVP-SLAKLSALKK 358 (744)
Q Consensus 280 ~~~~~L~~L~l~~~~l~~l~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~l~~~~-~i~~l~~L~~ 358 (744)
-.+.+++.|.+++|.+..+|+.+ ..+.+|++|+++ |..++++|.+++.+..|+.|++.-+ .+..+| .+|.++.|+.
T Consensus 30 f~~s~ITrLtLSHNKl~~vppni-a~l~nlevln~~-nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNI-AELKNLEVLNLS-NNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCceeecCCcH-HHhhhhhhhhcc-cchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhh
Confidence 35678888999999999999997 789999999999 6679999999999999999999876 455555 7999999999
Q ss_pred EEccCCCCc--ccccccccCCCCCEEeccCccccccCCCccCCCCCCcEEEcCccccccc-hhhhcccCCcEEEeeecCC
Q 004573 359 LDLGGTEID--VVPQGLEMLAHLTYLDLNWTRILQIPDGMLSNLSRIQHLRLDRVAFENA-EDILRLMKLEIFGVRFDHL 435 (744)
Q Consensus 359 L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~l~~l~~L~~L~l~~~~~ 435 (744)
||+.++++. .+|-.+..++.|+.|+++.+.+.-+|+. ++++++||.|.+..|....+ ++++.++.|+.|++.++..
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence 999999876 7899999999999999999999988887 79999999999999988777 8999999999999999877
Q ss_pred cchH
Q 004573 436 QDYH 439 (744)
Q Consensus 436 ~~~~ 439 (744)
+..+
T Consensus 186 ~vlp 189 (264)
T KOG0617|consen 186 TVLP 189 (264)
T ss_pred eecC
Confidence 6544
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.41 E-value=1.8e-12 Score=146.18 Aligned_cols=115 Identities=25% Similarity=0.382 Sum_probs=49.9
Q ss_pred cEEEeecccccccCCCCCCCCCCcccEEEcccCCCCCCChhHHhcCCCCcEEEcCCCCCCccCCccccCcccccEEeccC
Q 004573 261 EKVSLMRCRITRIPSNFPSSGCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINLTALMVHG 340 (744)
Q Consensus 261 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~ 340 (744)
..++++.+.++.+|..++ ++|+.|.+.+|.+..+|. .+++|++|++++| .+..+|.. ..+|+.|++.+
T Consensus 204 ~~LdLs~~~LtsLP~~l~----~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLP----AHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred cEEEcCCCCCCcCCcchh----cCCCEEEccCCcCCCCCC----CCCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence 344555555555544221 245555555555555443 1344555555533 34444431 23444444444
Q ss_pred cccccCCcCccCCCCccEEEccCCCCcccccccccCCCCCEEeccCccccccC
Q 004573 341 CFRLRHVPSLAKLSALKKLDLGGTEIDVVPQGLEMLAHLTYLDLNWTRILQIP 393 (744)
Q Consensus 341 ~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~ 393 (744)
|. +..+|. -..+|+.|++++|.+..+|.. +++|+.|++++|.+..+|
T Consensus 272 N~-L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp 318 (788)
T PRK15387 272 NP-LTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLP 318 (788)
T ss_pred Cc-hhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCCccccCC
Confidence 42 222322 113344444444444444432 234444444444444443
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.39 E-value=1.4e-12 Score=147.03 Aligned_cols=167 Identities=19% Similarity=0.199 Sum_probs=112.2
Q ss_pred EEecCccccccccccccccccEEEeecccccccCCCCCCCCCCcccEEEcccCCCCCCChhHHhcCCCCcEEEcCCCCCC
Q 004573 241 LVEAGKFGALLLEEEWKDDVEKVSLMRCRITRIPSNFPSSGCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNL 320 (744)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~L~~L~l~~~~~~ 320 (744)
+.-.......+|.. ....++.|.+..|.++.+|. ..++|++|++++|.+..+|.. ..+|+.|++++|. +
T Consensus 206 LdLs~~~LtsLP~~-l~~~L~~L~L~~N~Lt~LP~-----lp~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~-L 274 (788)
T PRK15387 206 LNVGESGLTTLPDC-LPAHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNP-L 274 (788)
T ss_pred EEcCCCCCCcCCcc-hhcCCCEEEccCCcCCCCCC-----CCCCCcEEEecCCccCcccCc----ccccceeeccCCc-h
Confidence 33333444555543 33478888888888888775 246888888888888888752 4678888888654 6
Q ss_pred ccCCccccCcccccEEeccCcccccCCcCccCCCCccEEEccCCCCcccccccccCCCCCEEeccCccccccCCCccCCC
Q 004573 321 LRLPDSISGLINLTALMVHGCFRLRHVPSLAKLSALKKLDLGGTEIDVVPQGLEMLAHLTYLDLNWTRILQIPDGMLSNL 400 (744)
Q Consensus 321 ~~lp~~i~~l~~L~~L~l~~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~l 400 (744)
..+|.. ..+|+.|++++| .++.+|. .+++|++|++++|.+..+|... .+|+.|++.+|.+..+|.. .
T Consensus 275 ~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L~~LP~l----p 341 (788)
T PRK15387 275 THLPAL---PSGLCKLWIFGN-QLTSLPV--LPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQLTSLPTL----P 341 (788)
T ss_pred hhhhhc---hhhcCEEECcCC-ccccccc--cccccceeECCCCccccCCCCc---ccccccccccCcccccccc----c
Confidence 666653 256778888887 4555554 2467888888888888877633 3567778888888777641 2
Q ss_pred CCCcEEEcCccccccchhhhcccCCcEEEeeec
Q 004573 401 SRIQHLRLDRVAFENAEDILRLMKLEIFGVRFD 433 (744)
Q Consensus 401 ~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~ 433 (744)
.+|+.|++++|.+..++.+ ..+|+.|.+..+
T Consensus 342 ~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N 372 (788)
T PRK15387 342 SGLQELSVSDNQLASLPTL--PSELYKLWAYNN 372 (788)
T ss_pred cccceEecCCCccCCCCCC--Ccccceehhhcc
Confidence 4688888888877665332 234555555444
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.37 E-value=3.6e-14 Score=154.77 Aligned_cols=143 Identities=27% Similarity=0.371 Sum_probs=104.3
Q ss_pred EeecccccccCCCCCCCCCCcccEEEcccCCCCCCChhHHhcCCCCcEEEcCCCCCCccCCccccCcccccEEeccCccc
Q 004573 264 SLMRCRITRIPSNFPSSGCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINLTALMVHGCFR 343 (744)
Q Consensus 264 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~ 343 (744)
+.+....+-+|..+.. -..+..|++..|.+-..|-.+..+..+|+.||++ |..+...|..|..+.+|+.|+++.+ .
T Consensus 4 d~s~~~l~~ip~~i~~--~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~ls-nn~~~~fp~~it~l~~L~~ln~s~n-~ 79 (1081)
T KOG0618|consen 4 DASDEQLELIPEQILN--NEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLS-NNQISSFPIQITLLSHLRQLNLSRN-Y 79 (1081)
T ss_pred ccccccCcccchhhcc--HHHHHhhhccccccccCchHHhhheeeeEEeecc-ccccccCCchhhhHHHHhhcccchh-h
Confidence 3344444445543321 1236677777776666665555666668888888 5567788888888888888888876 4
Q ss_pred ccCCc-CccCCCCccEEEccCCCCcccccccccCCCCCEEeccCccccccCCCccCCCCCCcEEEcCcc
Q 004573 344 LRHVP-SLAKLSALKKLDLGGTEIDVVPQGLEMLAHLTYLDLNWTRILQIPDGMLSNLSRIQHLRLDRV 411 (744)
Q Consensus 344 l~~~~-~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 411 (744)
++..| +++++.+|++|.|.+|.+..+|.++..+++|+.|+++.|.+..+|.- +..++.+..+..++|
T Consensus 80 i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~-i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 80 IRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLV-IEVLTAEEELAASNN 147 (1081)
T ss_pred HhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchh-HHhhhHHHHHhhhcc
Confidence 55555 68888888888888888888888888888888888888888888765 567777777777766
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.32 E-value=1.4e-12 Score=150.36 Aligned_cols=106 Identities=26% Similarity=0.384 Sum_probs=90.2
Q ss_pred cccccEEEeeccc--ccccCCCCCCCCCCcccEEEcccC-CCCCCChhHHhcCCCCcEEEcCCCCCCccCCccccCcccc
Q 004573 257 KDDVEKVSLMRCR--ITRIPSNFPSSGCRSLSTLLLQHN-YIEEIPEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINL 333 (744)
Q Consensus 257 ~~~~~~l~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~-~l~~l~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L 333 (744)
..+++.+-+..|. +..++..+ +..++.||+||+++| .+..+|..+ +++-+||||+++ .+.+..+|.++++|+.|
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~f-f~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~-~t~I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEF-FRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLS-DTGISHLPSGLGNLKKL 620 (889)
T ss_pred CCccceEEEeecchhhhhcCHHH-HhhCcceEEEECCCCCccCcCChHH-hhhhhhhccccc-CCCccccchHHHHHHhh
Confidence 3468888888886 55555533 567999999999988 788999987 889999999999 66789999999999999
Q ss_pred cEEeccCcccccCCcC-ccCCCCccEEEccCCC
Q 004573 334 TALMVHGCFRLRHVPS-LAKLSALKKLDLGGTE 365 (744)
Q Consensus 334 ~~L~l~~~~~l~~~~~-i~~l~~L~~L~l~~~~ 365 (744)
.||++..+..+..+|. ...|.+||+|.+....
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccc
Confidence 9999999988888886 4459999999998875
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.28 E-value=2.5e-11 Score=137.89 Aligned_cols=159 Identities=24% Similarity=0.355 Sum_probs=112.6
Q ss_pred ccccEEEeecccccccCCCCCCCCCCcccEEEcccCCCCCCChhHHhcCCCCcEEEcCCCCCCccCCccccCcccccEEe
Q 004573 258 DDVEKVSLMRCRITRIPSNFPSSGCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINLTALM 337 (744)
Q Consensus 258 ~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~ 337 (744)
.+...+.+.++.++.+|..+ .++++.|++++|.+..+|..++ .+|++|++++| .+..+|..+. .+|+.|+
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I----p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI----PEQITTLILDNNELKSLPENLQ---GNIKTLYANSN-QLTSIPATLP--DTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcCcCCccc----ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCC-ccccCChhhh--ccccEEE
Confidence 34567888888888887644 2578899999998888887653 57899999965 4677887554 4788899
Q ss_pred ccCcccccCCc-CccCCCCccEEEccCCCCcccccccccCCCCCEEeccCccccccCCCccCCCCCCcEEEcCccccccc
Q 004573 338 VHGCFRLRHVP-SLAKLSALKKLDLGGTEIDVVPQGLEMLAHLTYLDLNWTRILQIPDGMLSNLSRIQHLRLDRVAFENA 416 (744)
Q Consensus 338 l~~~~~l~~~~-~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 416 (744)
+++|. +..+| .+. .+|++|++++|++..+|..+. .+|++|++++|.+..+|.. + .++|+.|++++|.+..+
T Consensus 248 Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~-l--p~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 248 LSINR-ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAH-L--PSGITHLNVQSNSLTAL 319 (754)
T ss_pred CcCCc-cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCccc-c--hhhHHHHHhcCCccccC
Confidence 98875 44555 343 478899999888888887664 4788999988888887754 2 24677788887776654
Q ss_pred hhhhcccCCcEEEeeecCC
Q 004573 417 EDILRLMKLEIFGVRFDHL 435 (744)
Q Consensus 417 ~~l~~l~~L~~L~l~~~~~ 435 (744)
... -..+|+.|.+..+.+
T Consensus 320 P~~-l~~sL~~L~Ls~N~L 337 (754)
T PRK15370 320 PET-LPPGLKTLEAGENAL 337 (754)
T ss_pred Ccc-ccccceeccccCCcc
Confidence 211 124566666655543
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.17 E-value=2.6e-12 Score=127.60 Aligned_cols=301 Identities=23% Similarity=0.258 Sum_probs=188.4
Q ss_pred EEEeecccccccCCCCCCCCCCcccEEEcccCCCCCCChhHHhcCCCCcEEEcCCCCCCccCCccccCcccccEEeccCc
Q 004573 262 KVSLMRCRITRIPSNFPSSGCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINLTALMVHGC 341 (744)
Q Consensus 262 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~ 341 (744)
.++.++..++++|..++ +.-..+.|..|.|+.+|+..|+.+++||.|||+.|..-..-|+.|.+|..|..|-+.++
T Consensus 50 ~VdCr~~GL~eVP~~LP----~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLP----PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred eEEccCCCcccCcccCC----CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC
Confidence 34455566778887553 35667889999999999999999999999999966544455889999999999999998
Q ss_pred ccccCCc--CccCCCCccEEEccCCCCccccc-ccccCCCCCEEeccCccccccCCCccCCCCCCcEEEcCccccccchh
Q 004573 342 FRLRHVP--SLAKLSALKKLDLGGTEIDVVPQ-GLEMLAHLTYLDLNWTRILQIPDGMLSNLSRIQHLRLDRVAFENAED 418 (744)
Q Consensus 342 ~~l~~~~--~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 418 (744)
.+++.+| .++.|..|+.|.+.-|++.-++. .+..|++|..|.+..|.+..++.+.+..+.+++++++..|.......
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence 8999998 49999999999999998886554 58899999999999999999998889999999999988776544322
Q ss_pred hhcccC-CcEEEeeecCCcchHHhhhhhhccccceEEEEeecccccccccccccccceEEEeeccCccccccccceeeee
Q 004573 419 ILRLMK-LEIFGVRFDHLQDYHRYLSLQSRRRLSKYYFTVEKNAYTYARGEWDKYVSLVELRICENSVVLPRDIQQLHFN 497 (744)
Q Consensus 419 l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p~~L~~L~l~ 497 (744)
+..+.. +..+.+.......... ..+..-+.-.+....+. |. ...+|+.+ ..
T Consensus 206 L~wla~~~a~~~ietsgarc~~p----~rl~~~Ri~q~~a~kf~-------------------c~-~esl~s~~----~~ 257 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSP----YRLYYKRINQEDARKFL-------------------CS-LESLPSRL----SS 257 (498)
T ss_pred cchhhhHHhhchhhcccceecch----HHHHHHHhcccchhhhh-------------------hh-HHhHHHhh----cc
Confidence 222211 1111111100000000 00000000000000000 00 00000000 01
Q ss_pred ccCCccccccCCCCCCcCCCcEEEEeecCCcceeecCccccchhhhhHHHHhcCccchhhHhhhhhhhhccccccCCCCC
Q 004573 498 VCGGMRSLRDVPSLKDTTDLRECVIYRCYEMEFVFCLSSCYGILETLEYLLLQRLVDLKAIFQIAEDEVNASSLRTQTPS 577 (744)
Q Consensus 498 ~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~ 577 (744)
.|. .........+..+++|++|++++.. +..+... .+.....++.|.+.+ .+++.+..-.
T Consensus 258 ~d~-~d~~cP~~cf~~L~~L~~lnlsnN~-i~~i~~~--aFe~~a~l~eL~L~~-N~l~~v~~~~--------------- 317 (498)
T KOG4237|consen 258 EDF-PDSICPAKCFKKLPNLRKLNLSNNK-ITRIEDG--AFEGAAELQELYLTR-NKLEFVSSGM--------------- 317 (498)
T ss_pred ccC-cCCcChHHHHhhcccceEeccCCCc-cchhhhh--hhcchhhhhhhhcCc-chHHHHHHHh---------------
Confidence 110 0000001235778999999998854 4443322 233467888888865 2344442200
Q ss_pred CCceeEEEEEEEEecCCCcccccCCCcccCCCCccEEEEc
Q 004573 578 PPNIVFRLKRLIMSDCGKIRKLFSPELLPSLQNLEEIQVK 617 (744)
Q Consensus 578 ~~~~~~~L~~L~l~~C~~L~~l~~~~~l~~l~~L~~L~l~ 617 (744)
..++-.|+.|++++ +.++.+ .++.++.+.+|.+|.+-
T Consensus 318 -f~~ls~L~tL~L~~-N~it~~-~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 318 -FQGLSGLKTLSLYD-NQITTV-APGAFQTLFSLSTLNLL 354 (498)
T ss_pred -hhccccceeeeecC-CeeEEE-ecccccccceeeeeehc
Confidence 01222799999999 688776 55678888899999884
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.14 E-value=1.2e-10 Score=132.35 Aligned_cols=169 Identities=17% Similarity=0.306 Sum_probs=128.2
Q ss_pred ccccccccccccccEEEeecccccccCCCCCCCCCCcccEEEcccCCCCCCChhHHhcCCCCcEEEcCCCCCCccCCccc
Q 004573 248 GALLLEEEWKDDVEKVSLMRCRITRIPSNFPSSGCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLPDSI 327 (744)
Q Consensus 248 ~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~L~~L~l~~~~~~~~lp~~i 327 (744)
...+|.. ....++.+++.+|.++.+|..+ ..+|++|++++|.+..+|..+ ..+|+.|++++|. +..+|..+
T Consensus 190 LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l----~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N~-L~~LP~~l 260 (754)
T PRK15370 190 LTTIPAC-IPEQITTLILDNNELKSLPENL----QGNIKTLYANSNQLTSIPATL---PDTIQEMELSINR-ITELPERL 260 (754)
T ss_pred cCcCCcc-cccCCcEEEecCCCCCcCChhh----ccCCCEEECCCCccccCChhh---hccccEEECcCCc-cCcCChhH
Confidence 3344432 3457899999999999888743 358999999999999998765 3479999999665 66888776
Q ss_pred cCcccccEEeccCcccccCCcC-ccCCCCccEEEccCCCCcccccccccCCCCCEEeccCccccccCCCccCCCCCCcEE
Q 004573 328 SGLINLTALMVHGCFRLRHVPS-LAKLSALKKLDLGGTEIDVVPQGLEMLAHLTYLDLNWTRILQIPDGMLSNLSRIQHL 406 (744)
Q Consensus 328 ~~l~~L~~L~l~~~~~l~~~~~-i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 406 (744)
. .+|++|++++| .+..+|. +. .+|++|++++|.+..+|..+. .+|++|++++|.+..+|... .++|+.|
T Consensus 261 ~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l---~~sL~~L 330 (754)
T PRK15370 261 P--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETL---PPGLKTL 330 (754)
T ss_pred h--CCCCEEECcCC-ccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCccc---cccceec
Confidence 5 48999999876 5556663 43 589999999999998887654 47889999999988887542 3678899
Q ss_pred EcCccccccch-hhhcccCCcEEEeeecCCcc
Q 004573 407 RLDRVAFENAE-DILRLMKLEIFGVRFDHLQD 437 (744)
Q Consensus 407 ~l~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~ 437 (744)
++++|.+..++ .+ .++|+.|+++.|.+..
T Consensus 331 ~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~ 360 (754)
T PRK15370 331 EAGENALTSLPASL--PPELQVLDVSKNQITV 360 (754)
T ss_pred cccCCccccCChhh--cCcccEEECCCCCCCc
Confidence 99988877663 22 2678888888876654
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.02 E-value=7.4e-11 Score=117.44 Aligned_cols=211 Identities=23% Similarity=0.303 Sum_probs=149.8
Q ss_pred CccccccccccccccccEEEeecccccccCCCCCCCCCCcccEEEcccCCCCCCChhHHhcCCCCcEEEcCCCCCCccCC
Q 004573 245 GKFGALLLEEEWKDDVEKVSLMRCRITRIPSNFPSSGCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLP 324 (744)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~L~~L~l~~~~~~~~lp 324 (744)
+.....+|. ..+.+...+.+..|.|+.+|... +..+++||.|+|++|.|+.|.+..|+.+..|-.|-+.++..+..+|
T Consensus 55 ~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~a-F~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 55 GKGLTEVPA-NLPPETVEIRLDQNQISSIPPGA-FKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred CCCcccCcc-cCCCcceEEEeccCCcccCChhh-ccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 344444443 35567889999999999999865 6889999999999999999999999999998888888777788887
Q ss_pred cc-ccCcccccEEeccCcc-----------------------cccCCc--CccCCCCccEEEccCCC-------------
Q 004573 325 DS-ISGLINLTALMVHGCF-----------------------RLRHVP--SLAKLSALKKLDLGGTE------------- 365 (744)
Q Consensus 325 ~~-i~~l~~L~~L~l~~~~-----------------------~l~~~~--~i~~l~~L~~L~l~~~~------------- 365 (744)
.. |++|..|+.|.+.-|. .++.++ ++..+..++++.+..+.
T Consensus 133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~ 212 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADD 212 (498)
T ss_pred hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhH
Confidence 53 5666666666554432 111111 23334444444332211
Q ss_pred -----------------------------------Cccc--------------cc-ccccCCCCCEEeccCccccccCCC
Q 004573 366 -----------------------------------IDVV--------------PQ-GLEMLAHLTYLDLNWTRILQIPDG 395 (744)
Q Consensus 366 -----------------------------------l~~l--------------p~-~i~~L~~L~~L~l~~~~~~~~~~~ 395 (744)
.+++ |. .+.+|++|+.|++++|.++.+.++
T Consensus 213 ~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~ 292 (498)
T KOG4237|consen 213 LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG 292 (498)
T ss_pred HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh
Confidence 1111 11 257899999999999999999999
Q ss_pred ccCCCCCCcEEEcCccccccc--hhhhcccCCcEEEeeecCCcchHHhhhhhhccccceEEEEee
Q 004573 396 MLSNLSRIQHLRLDRVAFENA--EDILRLMKLEIFGVRFDHLQDYHRYLSLQSRRRLSKYYFTVE 458 (744)
Q Consensus 396 ~l~~l~~L~~L~l~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~ 458 (744)
.|..+..+++|++..|++..+ ..+.++..|+.|++.++.++.... ..+.....|..+.+...
T Consensus 293 aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~-~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 293 AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP-GAFQTLFSLSTLNLLSN 356 (498)
T ss_pred hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec-ccccccceeeeeehccC
Confidence 999999999999999998877 667889999999999888765432 22334445555555443
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.87 E-value=9.8e-11 Score=121.80 Aligned_cols=150 Identities=25% Similarity=0.350 Sum_probs=92.2
Q ss_pred ccEEEeecccccccCCCCCCCCCCcccEEEcccCCCCCCChhHHhcCCCCcEEEcCCCCCCccCCccccCcccccEEecc
Q 004573 260 VEKVSLMRCRITRIPSNFPSSGCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINLTALMVH 339 (744)
Q Consensus 260 ~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~ 339 (744)
+..+.+..|.+..+|..+ ..+..|.+|+++.|.+..+|..++ ..-|++|-++ |+.++.+|+.++.+.+|..|+.+
T Consensus 100 Le~liLy~n~~r~ip~~i--~~L~~lt~l~ls~NqlS~lp~~lC--~lpLkvli~s-NNkl~~lp~~ig~~~tl~~ld~s 174 (722)
T KOG0532|consen 100 LESLILYHNCIRTIPEAI--CNLEALTFLDLSSNQLSHLPDGLC--DLPLKVLIVS-NNKLTSLPEEIGLLPTLAHLDVS 174 (722)
T ss_pred HHHHHHHhccceecchhh--hhhhHHHHhhhccchhhcCChhhh--cCcceeEEEe-cCccccCCcccccchhHHHhhhh
Confidence 444455555555555422 455566666666666666666552 3346666666 45566666666666666666666
Q ss_pred CcccccCCcCccCCCCccEEEccCCCCcccccccccCCCCCEEeccCccccccCCCccCCCCCCcEEEcCccccccc
Q 004573 340 GCFRLRHVPSLAKLSALKKLDLGGTEIDVVPQGLEMLAHLTYLDLNWTRILQIPDGMLSNLSRIQHLRLDRVAFENA 416 (744)
Q Consensus 340 ~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 416 (744)
.|.....++.++.+.+|+.|+++.|.+..+|..++.| .|..||++.|++..+|.. |.+|+.||+|.+.+|.+...
T Consensus 175 ~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~-fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 175 KNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVD-FRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred hhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchh-hhhhhhheeeeeccCCCCCC
Confidence 6644444445666666666666666666666666644 466666666666666655 56666666666666666554
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.80 E-value=5.7e-09 Score=96.67 Aligned_cols=125 Identities=25% Similarity=0.353 Sum_probs=43.1
Q ss_pred cCCCCcEEEcCCCCCCccCCcccc-CcccccEEeccCcccccCCcCccCCCCccEEEccCCCCccccccc-ccCCCCCEE
Q 004573 305 HLTGLKILDLSGNSNLLRLPDSIS-GLINLTALMVHGCFRLRHVPSLAKLSALKKLDLGGTEIDVVPQGL-EMLAHLTYL 382 (744)
Q Consensus 305 ~l~~L~~L~l~~~~~~~~lp~~i~-~l~~L~~L~l~~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L 382 (744)
+..+++.|+|.+|. +..+. .++ .+.+|+.|++++| .++.++.+..+.+|++|++++|.|+.++..+ ..+++|++|
T Consensus 17 n~~~~~~L~L~~n~-I~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQ-ISTIE-NLGATLDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccc-ccccc-chhhhhcCCCEEECCCC-CCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 34445555555332 33332 243 3455555555554 4445555666777777777777777775554 357777777
Q ss_pred eccCccccccCC-CccCCCCCCcEEEcCccccccc-----hhhhcccCCcEEEeee
Q 004573 383 DLNWTRILQIPD-GMLSNLSRIQHLRLDRVAFENA-----EDILRLMKLEIFGVRF 432 (744)
Q Consensus 383 ~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~-----~~l~~l~~L~~L~l~~ 432 (744)
++++|.+..+.. ..+..+++|+.|++.+|..... .-+..+++|+.|+...
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 777777665432 2256677777888887766543 4456777888776553
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.76 E-value=4.1e-09 Score=110.76 Aligned_cols=176 Identities=23% Similarity=0.240 Sum_probs=104.5
Q ss_pred cccEEEeeccccc-----ccCCCCCCCCCCcccEEEcccCCCCCCCh------hHHhcCCCCcEEEcCCCCCCccCCccc
Q 004573 259 DVEKVSLMRCRIT-----RIPSNFPSSGCRSLSTLLLQHNYIEEIPE------FFFEHLTGLKILDLSGNSNLLRLPDSI 327 (744)
Q Consensus 259 ~~~~l~l~~~~~~-----~~~~~~~~~~~~~L~~L~l~~~~l~~l~~------~~~~~l~~L~~L~l~~~~~~~~lp~~i 327 (744)
.++.+.+.++.+. .++.. ....++++.++++++.+...+. ..+..+.+|+.|++++|......+..+
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~--l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASA--LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHH--HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 3666666666542 22221 2345667777777775542111 234567788888888666544445445
Q ss_pred cCccc---ccEEeccCccccc----CCc-CccCC-CCccEEEccCCCCc-----ccccccccCCCCCEEeccCccccc--
Q 004573 328 SGLIN---LTALMVHGCFRLR----HVP-SLAKL-SALKKLDLGGTEID-----VVPQGLEMLAHLTYLDLNWTRILQ-- 391 (744)
Q Consensus 328 ~~l~~---L~~L~l~~~~~l~----~~~-~i~~l-~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~~~-- 391 (744)
..+.+ |++|++++|.... .+. .+..+ ++|+.|++++|.+. .++..+..+++|++|++++|.+..
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 55544 8888887775321 111 24555 77888888888766 344456667778888887776652
Q ss_pred ---cCCCccCCCCCCcEEEcCccccccc------hhhhcccCCcEEEeeecCCcc
Q 004573 392 ---IPDGMLSNLSRIQHLRLDRVAFENA------EDILRLMKLEIFGVRFDHLQD 437 (744)
Q Consensus 392 ---~~~~~l~~l~~L~~L~l~~~~~~~~------~~l~~l~~L~~L~l~~~~~~~ 437 (744)
++. .+..+++|+.|++++|.+... ..+..+++|+.|+++++...+
T Consensus 182 ~~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 182 IRALAE-GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HHHHHH-HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 111 134456788888877765432 334556777777777766544
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.70 E-value=1.8e-09 Score=103.73 Aligned_cols=126 Identities=26% Similarity=0.338 Sum_probs=55.5
Q ss_pred cccEEEeecccccccCCCCCCCCCCcccEEEcccCCCCCCChhHHhcCCCCcEEEcCCCCCCccCCccccCcccccEEec
Q 004573 259 DVEKVSLMRCRITRIPSNFPSSGCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINLTALMV 338 (744)
Q Consensus 259 ~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l 338 (744)
.+..+++++|.|+.+..+. .-.|.+|.|++++|.+..+.. +..+++|..|||++|. +.++-..-.+|.|.+.|.|
T Consensus 285 ~LtelDLS~N~I~~iDESv--KL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESV--KLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhccccccchhhhhhhh--hhccceeEEeccccceeeehh--hhhcccceEeecccch-hHhhhhhHhhhcCEeeeeh
Confidence 3444555555554444422 234455555555554444433 2344455555555332 3333222233444444444
Q ss_pred cCcccccCCcCccCCCCccEEEccCCCCcccc--cccccCCCCCEEeccCcccc
Q 004573 339 HGCFRLRHVPSLAKLSALKKLDLGGTEIDVVP--QGLEMLAHLTYLDLNWTRIL 390 (744)
Q Consensus 339 ~~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~ 390 (744)
.+| .+..+..+++|.+|.+||+++|+|..+. .+||+|+.|+++.+.+|.+.
T Consensus 360 a~N-~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 360 AQN-KIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhh-hHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 443 3344444444444555555544444332 23444444444444444433
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.69 E-value=7.7e-09 Score=95.78 Aligned_cols=116 Identities=26% Similarity=0.404 Sum_probs=45.1
Q ss_pred CccCCccccCcccccEEeccCcccccCCcCcc-CCCCccEEEccCCCCcccccccccCCCCCEEeccCccccccCCCccC
Q 004573 320 LLRLPDSISGLINLTALMVHGCFRLRHVPSLA-KLSALKKLDLGGTEIDVVPQGLEMLAHLTYLDLNWTRILQIPDGMLS 398 (744)
Q Consensus 320 ~~~lp~~i~~l~~L~~L~l~~~~~l~~~~~i~-~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~ 398 (744)
+...|. +.+..+++.|+|+++ .+..+..++ .+.+|+.|++++|.|+.++ ++..+++|++|++++|.+.++..+...
T Consensus 9 i~~~~~-~~n~~~~~~L~L~~n-~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~ 85 (175)
T PF14580_consen 9 IEQIAQ-YNNPVKLRELNLRGN-QISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDK 85 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHH
T ss_pred cccccc-ccccccccccccccc-ccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHH
Confidence 445554 566668999999997 566677777 6899999999999999984 788999999999999999988654334
Q ss_pred CCCCCcEEEcCccccccc---hhhhcccCCcEEEeeecCCcch
Q 004573 399 NLSRIQHLRLDRVAFENA---EDILRLMKLEIFGVRFDHLQDY 438 (744)
Q Consensus 399 ~l~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~ 438 (744)
.+++|++|++++|.+..+ ..+..+++|+.|++.+|+....
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence 689999999999987665 7778889999999998877643
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.65 E-value=2.4e-09 Score=111.64 Aligned_cols=179 Identities=27% Similarity=0.394 Sum_probs=123.6
Q ss_pred cccEEEeecccccccCCCCCCCCCCcccEEEcccCCCCCCChhHHhcCCCCcEEEcCCCCCCccCCccccCcccccEEec
Q 004573 259 DVEKVSLMRCRITRIPSNFPSSGCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINLTALMV 338 (744)
Q Consensus 259 ~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l 338 (744)
+....+++.|++.++|..+ ..|..|..+.+..|.+..+|..+ .++..|.+|||+.| .+..+|..++.|+ |+.|.+
T Consensus 76 dt~~aDlsrNR~~elp~~~--~~f~~Le~liLy~n~~r~ip~~i-~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEA--CAFVSLESLILYHNCIRTIPEAI-CNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred chhhhhccccccccCchHH--HHHHHHHHHHHHhccceecchhh-hhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEE
Confidence 3445666677777776633 45666777777777777777765 66777777777744 4667777777664 777777
Q ss_pred cCcccccCCcCccCCCCccEEEccCCCCcccccccccCCCCCEEeccCccccccCCCccCCCCCCcEEEcCccccccc-h
Q 004573 339 HGCFRLRHVPSLAKLSALKKLDLGGTEIDVVPQGLEMLAHLTYLDLNWTRILQIPDGMLSNLSRIQHLRLDRVAFENA-E 417 (744)
Q Consensus 339 ~~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~ 417 (744)
++++....++.++.+..|..||.+.|.+..+|..++.|.+|+.|+++.|++..+|+. +..|+ |..|+++.|++..+ .
T Consensus 151 sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~E-l~~Lp-Li~lDfScNkis~iPv 228 (722)
T KOG0532|consen 151 SNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEE-LCSLP-LIRLDFSCNKISYLPV 228 (722)
T ss_pred ecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHH-HhCCc-eeeeecccCceeecch
Confidence 766433333367777777777777777777777777777777777777777777766 44443 67777777777766 6
Q ss_pred hhhcccCCcEEEeeecCCcchHHhhhh
Q 004573 418 DILRLMKLEIFGVRFDHLQDYHRYLSL 444 (744)
Q Consensus 418 ~l~~l~~L~~L~l~~~~~~~~~~~~~~ 444 (744)
.+.+|++|+.|-+..|++++-++.+..
T Consensus 229 ~fr~m~~Lq~l~LenNPLqSPPAqIC~ 255 (722)
T KOG0532|consen 229 DFRKMRHLQVLQLENNPLQSPPAQICE 255 (722)
T ss_pred hhhhhhhheeeeeccCCCCCChHHHHh
Confidence 677777777777777777765554433
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.57 E-value=1e-08 Score=98.54 Aligned_cols=124 Identities=28% Similarity=0.331 Sum_probs=53.6
Q ss_pred CCcEEEcCCCCCCccCCccccCcccccEEeccCcccccCCcCccCCCCccEEEccCCCCcccccccccCCCCCEEeccCc
Q 004573 308 GLKILDLSGNSNLLRLPDSISGLINLTALMVHGCFRLRHVPSLAKLSALKKLDLGGTEIDVVPQGLEMLAHLTYLDLNWT 387 (744)
Q Consensus 308 ~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~ 387 (744)
.|..+||++|. ++.+-+++.-++.+|+|+++.| .+..+.++..|++|++||+++|.+.++.-.-.+|-+.++|.+.+|
T Consensus 285 ~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N-~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 285 ELTELDLSGNL-ITQIDESVKLAPKLRRLILSQN-RIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhhhccccccc-hhhhhhhhhhccceeEEecccc-ceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence 34444444332 3334444444444444444443 233333344444444444444444433333333444444444444
Q ss_pred cccccCCCccCCCCCCcEEEcCccccccc---hhhhcccCCcEEEeeecCC
Q 004573 388 RILQIPDGMLSNLSRIQHLRLDRVAFENA---EDILRLMKLEIFGVRFDHL 435 (744)
Q Consensus 388 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~l~~~~~ 435 (744)
.+..+.. ++++-+|..|++.+|++... ..+++++-|+.+.+.+|++
T Consensus 363 ~iE~LSG--L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 363 KIETLSG--LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hHhhhhh--hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 4433321 34444444444444444332 3444444444444444443
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.52 E-value=7.4e-08 Score=104.39 Aligned_cols=174 Identities=30% Similarity=0.427 Sum_probs=139.8
Q ss_pred ccccEEEeecccccccCCCCCCCCCC-cccEEEcccCCCCCCChhHHhcCCCCcEEEcCCCCCCccCCccccCcccccEE
Q 004573 258 DDVEKVSLMRCRITRIPSNFPSSGCR-SLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINLTAL 336 (744)
Q Consensus 258 ~~~~~l~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~l~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L 336 (744)
..+..+.+.++.+.+++... .... +|+.|++++|.+..++..+ +.++.|+.|++++| .+..+|...+.+.+|+.|
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~--~~~~~nL~~L~l~~N~i~~l~~~~-~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLI--GLLKSNLKELDLSDNKIESLPSPL-RNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred cceeEEecCCcccccCcccc--ccchhhcccccccccchhhhhhhh-hccccccccccCCc-hhhhhhhhhhhhhhhhhe
Confidence 46788888999888888733 3343 8999999999988886443 78999999999954 578888877789999999
Q ss_pred eccCcccccCCc-CccCCCCccEEEccCCCCcccccccccCCCCCEEeccCccccccCCCccCCCCCCcEEEcCcccccc
Q 004573 337 MVHGCFRLRHVP-SLAKLSALKKLDLGGTEIDVVPQGLEMLAHLTYLDLNWTRILQIPDGMLSNLSRIQHLRLDRVAFEN 415 (744)
Q Consensus 337 ~l~~~~~l~~~~-~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 415 (744)
+++++ .+..+| .++.+..|++|.++++.+...+..+.++.++..|.+..+.+..++.. ++.+++++.|++++|.+..
T Consensus 192 ~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~-~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 192 DLSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPES-IGNLSNLETLDLSNNQISS 269 (394)
T ss_pred eccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccch-hccccccceeccccccccc
Confidence 99987 455555 45677789999999987777888888999999998888877765544 6888899999999999888
Q ss_pred chhhhcccCCcEEEeeecCCcc
Q 004573 416 AEDILRLMKLEIFGVRFDHLQD 437 (744)
Q Consensus 416 ~~~l~~l~~L~~L~l~~~~~~~ 437 (744)
+..++.+.+++.|+++++....
T Consensus 270 i~~~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 270 ISSLGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred cccccccCccCEEeccCccccc
Confidence 8778889999999988765543
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.41 E-value=2.5e-07 Score=97.22 Aligned_cols=155 Identities=21% Similarity=0.209 Sum_probs=68.8
Q ss_pred CCcccEEEcccCCCCCCChhHHhcCCC---CcEEEcCCCCCCc----cCCccccCc-ccccEEeccCccccc----CCc-
Q 004573 282 CRSLSTLLLQHNYIEEIPEFFFEHLTG---LKILDLSGNSNLL----RLPDSISGL-INLTALMVHGCFRLR----HVP- 348 (744)
Q Consensus 282 ~~~L~~L~l~~~~l~~l~~~~~~~l~~---L~~L~l~~~~~~~----~lp~~i~~l-~~L~~L~l~~~~~l~----~~~- 348 (744)
+++|+.|++++|.+.......+..+.. |++|++++|.... .+..++..+ .+|+.|++++|.... .++
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 445555555555444222222233333 5555555443221 122233444 555555555553221 111
Q ss_pred CccCCCCccEEEccCCCCc-----ccccccccCCCCCEEeccCccccccC----CCccCCCCCCcEEEcCccccccc--h
Q 004573 349 SLAKLSALKKLDLGGTEID-----VVPQGLEMLAHLTYLDLNWTRILQIP----DGMLSNLSRIQHLRLDRVAFENA--E 417 (744)
Q Consensus 349 ~i~~l~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~--~ 417 (744)
.+..+.+|++|++++|.+. .++..+..+++|++|++++|.+.... ...+..+++|++|++++|..... .
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 2344455556666555544 22333444455666666555543211 11134455566666665544421 1
Q ss_pred hhhc-----ccCCcEEEeeecCCc
Q 004573 418 DILR-----LMKLEIFGVRFDHLQ 436 (744)
Q Consensus 418 ~l~~-----l~~L~~L~l~~~~~~ 436 (744)
.+.. ...|+.|++.++.+.
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCC
Confidence 1111 245555555555443
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=4.8e-08 Score=99.17 Aligned_cols=198 Identities=20% Similarity=0.246 Sum_probs=105.6
Q ss_pred cccccEEEeecccccccCCCCCCCCCCcccEEEcccCCCCCCC--hhHHhcCCCCcEEEcCCCCCCccCCcc-ccCcccc
Q 004573 257 KDDVEKVSLMRCRITRIPSNFPSSGCRSLSTLLLQHNYIEEIP--EFFFEHLTGLKILDLSGNSNLLRLPDS-ISGLINL 333 (744)
Q Consensus 257 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~~~~~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L 333 (744)
.++++.+++.+......+..--...|+++|.|++++|-+.... ..+...+++|+.|+++.|....-..+. -..+.+|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 3566777777766555443112356778888888877433221 233467788888888755422111111 1346677
Q ss_pred cEEeccCcccc-cCCc-CccCCCCccEEEccCCC-CcccccccccCCCCCEEeccCccccccCCC-ccCCCCCCcEEEcC
Q 004573 334 TALMVHGCFRL-RHVP-SLAKLSALKKLDLGGTE-IDVVPQGLEMLAHLTYLDLNWTRILQIPDG-MLSNLSRIQHLRLD 409 (744)
Q Consensus 334 ~~L~l~~~~~l-~~~~-~i~~l~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~ 409 (744)
+.|.+++|..- .++. .....++|+.|++.+|. +..--....-++.|+.|++++|.+..++.. ..+.++.|..|+++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 77777777422 1111 13345666666666662 221112233455666666666666655521 24556666666666
Q ss_pred ccccccc--------hhhhcccCCcEEEeeecCCcchHHhhhhhhccccceEE
Q 004573 410 RVAFENA--------EDILRLMKLEIFGVRFDHLQDYHRYLSLQSRRRLSKYY 454 (744)
Q Consensus 410 ~~~~~~~--------~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~ 454 (744)
.+.+..+ .....+++|+.|.+..|...+|...-......+|..+.
T Consensus 280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLR 332 (505)
T ss_pred ccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhh
Confidence 6655544 11234566666666666665555444444444444443
No 34
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.37 E-value=4.9e-09 Score=105.61 Aligned_cols=82 Identities=26% Similarity=0.286 Sum_probs=50.7
Q ss_pred CCCcEEEcCCCCCCccC--CccccCcccccEEeccCcccccCCc--C-ccCCCCccEEEccCC-CCcc--cccccccCCC
Q 004573 307 TGLKILDLSGNSNLLRL--PDSISGLINLTALMVHGCFRLRHVP--S-LAKLSALKKLDLGGT-EIDV--VPQGLEMLAH 378 (744)
Q Consensus 307 ~~L~~L~l~~~~~~~~l--p~~i~~l~~L~~L~l~~~~~l~~~~--~-i~~l~~L~~L~l~~~-~l~~--lp~~i~~L~~ 378 (744)
..|+.|.+.|+.....- -....+.+++.+|.+.+|..+++-. + -....+|++|++..| .++. +-.-....++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 35777888877654432 2234567788888888887665543 2 335677888888776 4442 2112344667
Q ss_pred CCEEeccCcc
Q 004573 379 LTYLDLNWTR 388 (744)
Q Consensus 379 L~~L~l~~~~ 388 (744)
|.+|++++|.
T Consensus 218 L~~lNlSwc~ 227 (483)
T KOG4341|consen 218 LKYLNLSWCP 227 (483)
T ss_pred HHHhhhccCc
Confidence 7777777664
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.30 E-value=4.5e-07 Score=98.25 Aligned_cols=152 Identities=28% Similarity=0.454 Sum_probs=134.3
Q ss_pred cccEEEeecccccccCCCCCCCCCCcccEEEcccCCCCCCChhHHhcCCCCcEEEcCCCCCCccCCccccCcccccEEec
Q 004573 259 DVEKVSLMRCRITRIPSNFPSSGCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINLTALMV 338 (744)
Q Consensus 259 ~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l 338 (744)
+++.+++..|.+..++.. ...+++|+.|++++|.+..++... .....|+.|++++| .+..+|..+....+|++|.+
T Consensus 141 nL~~L~l~~N~i~~l~~~--~~~l~~L~~L~l~~N~l~~l~~~~-~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~ 216 (394)
T COG4886 141 NLKELDLSDNKIESLPSP--LRNLPNLKNLDLSFNDLSDLPKLL-SNLSNLNNLDLSGN-KISDLPPEIELLSALEELDL 216 (394)
T ss_pred hcccccccccchhhhhhh--hhccccccccccCCchhhhhhhhh-hhhhhhhheeccCC-ccccCchhhhhhhhhhhhhh
Confidence 799999999999998642 378999999999999999998854 37899999999955 58899987788888999999
Q ss_pred cCcccccCCcCccCCCCccEEEccCCCCcccccccccCCCCCEEeccCccccccCCCccCCCCCCcEEEcCccccccc
Q 004573 339 HGCFRLRHVPSLAKLSALKKLDLGGTEIDVVPQGLEMLAHLTYLDLNWTRILQIPDGMLSNLSRIQHLRLDRVAFENA 416 (744)
Q Consensus 339 ~~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 416 (744)
.++..+..+..+.++.++..|.+.++.+..+|..++.+.+|+.|+++++.+..++. ++.+.+++.|+++++.....
T Consensus 217 ~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 217 SNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence 99876777778999999999999999998889999999999999999999999887 78999999999998876654
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.27 E-value=7.1e-07 Score=67.65 Aligned_cols=59 Identities=29% Similarity=0.473 Sum_probs=47.4
Q ss_pred CCccEEEccCCCCccccc-ccccCCCCCEEeccCccccccCCCccCCCCCCcEEEcCccc
Q 004573 354 SALKKLDLGGTEIDVVPQ-GLEMLAHLTYLDLNWTRILQIPDGMLSNLSRIQHLRLDRVA 412 (744)
Q Consensus 354 ~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 412 (744)
++|++|++++|++..+|. .+.++++|++|++++|.+..++++.|.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 367788888888888875 46778888888888888888888778888888888888775
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.16 E-value=1.5e-06 Score=65.85 Aligned_cols=58 Identities=40% Similarity=0.522 Sum_probs=38.3
Q ss_pred CcccEEEcccCCCCCCChhHHhcCCCCcEEEcCCCCCCccCC-ccccCcccccEEeccCc
Q 004573 283 RSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLP-DSISGLINLTALMVHGC 341 (744)
Q Consensus 283 ~~L~~L~l~~~~l~~l~~~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~ 341 (744)
++|++|++++|.+..+|...|..+++|++|++++|. +..+| ..+.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 356777777777777777667777777777777444 34443 45666666776666665
No 38
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.15 E-value=9.1e-08 Score=96.64 Aligned_cols=80 Identities=21% Similarity=0.205 Sum_probs=52.7
Q ss_pred cccEEEcccCC-C--CCCChhHHhcCCCCcEEEcCCCCCCccC-Cccc-cCcccccEEeccCcccccCCc---CccCCCC
Q 004573 284 SLSTLLLQHNY-I--EEIPEFFFEHLTGLKILDLSGNSNLLRL-PDSI-SGLINLTALMVHGCFRLRHVP---SLAKLSA 355 (744)
Q Consensus 284 ~L~~L~l~~~~-l--~~l~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i-~~l~~L~~L~l~~~~~l~~~~---~i~~l~~ 355 (744)
.|+.|.+.++. + ..+- .+..+++++..|++.+|..++.- -.++ ..+.+|++|++..|..++... .....++
T Consensus 139 ~lk~LSlrG~r~v~~sslr-t~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLR-TFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred ccccccccccccCCcchhh-HHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 46667777762 2 2222 23367888888888888755432 1122 346789999999987776543 2345788
Q ss_pred ccEEEccCC
Q 004573 356 LKKLDLGGT 364 (744)
Q Consensus 356 L~~L~l~~~ 364 (744)
|++|+++.|
T Consensus 218 L~~lNlSwc 226 (483)
T KOG4341|consen 218 LKYLNLSWC 226 (483)
T ss_pred HHHhhhccC
Confidence 999999988
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.07 E-value=8.2e-06 Score=92.85 Aligned_cols=103 Identities=25% Similarity=0.373 Sum_probs=70.4
Q ss_pred CcEEEcCCCCCCccCCccccCcccccEEeccCcccccCCc-CccCCCCccEEEccCCCCc-ccccccccCCCCCEEeccC
Q 004573 309 LKILDLSGNSNLLRLPDSISGLINLTALMVHGCFRLRHVP-SLAKLSALKKLDLGGTEID-VVPQGLEMLAHLTYLDLNW 386 (744)
Q Consensus 309 L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~l~~~~-~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~ 386 (744)
++.|+|++|.....+|..++++.+|++|+|++|.....+| .++.+.+|++|++++|.+. .+|..+++|++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 6667777665555677777777777777777775555566 5777777888888877776 6777777788888888877
Q ss_pred cccc-ccCCCccCC-CCCCcEEEcCccc
Q 004573 387 TRIL-QIPDGMLSN-LSRIQHLRLDRVA 412 (744)
Q Consensus 387 ~~~~-~~~~~~l~~-l~~L~~L~l~~~~ 412 (744)
|.+. .+|.. ++. +.++..+++.+|.
T Consensus 500 N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChH-HhhccccCceEEecCCc
Confidence 7766 34433 343 2455666666654
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.05 E-value=7.6e-06 Score=93.14 Aligned_cols=103 Identities=18% Similarity=0.271 Sum_probs=78.6
Q ss_pred cccEEeccCcccccCCc-CccCCCCccEEEccCCCCc-ccccccccCCCCCEEeccCccccccCCCccCCCCCCcEEEcC
Q 004573 332 NLTALMVHGCFRLRHVP-SLAKLSALKKLDLGGTEID-VVPQGLEMLAHLTYLDLNWTRILQIPDGMLSNLSRIQHLRLD 409 (744)
Q Consensus 332 ~L~~L~l~~~~~l~~~~-~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 409 (744)
.++.|+|+++.....+| .++++.+|+.|+|++|.+. .+|..++.+++|+.|++++|.+....+..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47788888876655666 5889999999999999887 788889999999999999998875545558899999999999
Q ss_pred ccccccc--hhhhcc-cCCcEEEeeecC
Q 004573 410 RVAFENA--EDILRL-MKLEIFGVRFDH 434 (744)
Q Consensus 410 ~~~~~~~--~~l~~l-~~L~~L~l~~~~ 434 (744)
+|.+... ..+..+ .++..+.+.++.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 8876643 344432 455666666553
No 41
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=2.6e-06 Score=86.80 Aligned_cols=179 Identities=18% Similarity=0.157 Sum_probs=98.9
Q ss_pred ccccEEEeecccccccCCCC-CCCCCCcccEEEcccCCCCCCCh-hHHhcCCCCcEEEcCCCCCCc-cCCccccCccccc
Q 004573 258 DDVEKVSLMRCRITRIPSNF-PSSGCRSLSTLLLQHNYIEEIPE-FFFEHLTGLKILDLSGNSNLL-RLPDSISGLINLT 334 (744)
Q Consensus 258 ~~~~~l~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~l~~-~~~~~l~~L~~L~l~~~~~~~-~lp~~i~~l~~L~ 334 (744)
.+++.++++.|-+....... ....+|+|+.|+++.|.+....+ ..-..+.+|+.|.|+.|.... .+-.-+..+++|.
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~ 225 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE 225 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence 35666666666433321100 02356677777777774432111 111245677777777654221 1111233456677
Q ss_pred EEeccCcccc-cCCcCccCCCCccEEEccCCCCcccc--cccccCCCCCEEeccCccccccC--CC----ccCCCCCCcE
Q 004573 335 ALMVHGCFRL-RHVPSLAKLSALKKLDLGGTEIDVVP--QGLEMLAHLTYLDLNWTRILQIP--DG----MLSNLSRIQH 405 (744)
Q Consensus 335 ~L~l~~~~~l-~~~~~i~~l~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~--~~----~l~~l~~L~~ 405 (744)
.|++.+|..+ ..-.+..-++.|+.|||++|.+..++ ..++.++.|+.|+++.|++.++. +. ....+++|+.
T Consensus 226 ~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~ 305 (505)
T KOG3207|consen 226 VLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEY 305 (505)
T ss_pred HhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccccccee
Confidence 7777766322 11113445667777777777776666 34677777777777777765432 21 0245677777
Q ss_pred EEcCccccccc---hhhhcccCCcEEEeeecCCc
Q 004573 406 LRLDRVAFENA---EDILRLMKLEIFGVRFDHLQ 436 (744)
Q Consensus 406 L~l~~~~~~~~---~~l~~l~~L~~L~l~~~~~~ 436 (744)
|++..|++... ..+..+.+|+.|.+..+.+.
T Consensus 306 L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 306 LNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred eecccCccccccccchhhccchhhhhhccccccc
Confidence 87777766433 55555666666666655543
No 42
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.97 E-value=7.3e-05 Score=90.52 Aligned_cols=199 Identities=13% Similarity=0.176 Sum_probs=122.8
Q ss_pred CceEEEEEcCCCCccc---cccccCCCCCCCCCcEEEEEecchhHH--Hhc--CCeeEecC----CCCHHHHHHHHHHHh
Q 004573 5 RKRYVLILDDVWKRFS---LDEVGIPEPTVDNGCKLVLTTRLKEVA--RSM--GCEVIPVD----LLSEDEALRLFSKHV 73 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~~---~~~l~~~~~~~~~gsriivTTR~~~v~--~~~--~~~~~~l~----~L~~~~~~~Lf~~~~ 73 (744)
+.+++|||||+..... .+.+..-+.....+-++|||||...-. ... ......+. +|+.+|+.++|....
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~ 199 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRL 199 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhcc
Confidence 5789999999976421 122222222224566888999974211 111 11344455 999999999998765
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCCCCCCccchhhhhhhh-ccCCCCh
Q 004573 74 GDYLLRIPTIEPILKQVVEQCAGLPLAIVTVASSMKSEDDVDLWKNALNELKENSTSVEGMGDEVIPRLKFS-YDRLMDP 152 (744)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~s-y~~L~~~ 152 (744)
+.. --.+...+|.+.|+|.|+++..++..+....... ......+.. .....+...+.-. |+.|| +
T Consensus 200 ~~~-----~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~~~~~------~~~~~~~~~l~~~v~~~l~-~ 265 (903)
T PRK04841 200 SSP-----IEAAESSRLCDDVEGWATALQLIALSARQNNSSL--HDSARRLAG------INASHLSDYLVEEVLDNVD-L 265 (903)
T ss_pred CCC-----CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhhHhhcC------CCchhHHHHHHHHHHhcCC-H
Confidence 542 1234567899999999999998887775432100 011111110 0012344444333 78998 8
Q ss_pred hhhHHHhhccCCCCCcccChHHHHHHHHHhCccccchhhhHHHHhHHHHHHHHHHcccccc-c-CCCcEEechHHHHHHH
Q 004573 153 KIKRCFLYCALFPEDFDIPKEELIEYWIVEGLIDVMETRQAMHYKGLAILHKLKENCLLES-A-EDGKCVKMHDLVREMA 230 (744)
Q Consensus 153 ~~k~cfl~~s~fp~~~~i~~~~Li~~wiaeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~-~-~~~~~~~mHdli~~~~ 230 (744)
+.+..++..|+++ .|+.+. . ..+.. .+.+...+++|.+.+++.. . +.+..|++|++++++.
T Consensus 266 ~~~~~l~~~a~~~---~~~~~l-~-----~~l~~--------~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l 328 (903)
T PRK04841 266 ETRHFLLRCSVLR---SMNDAL-I-----VRVTG--------EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFL 328 (903)
T ss_pred HHHHHHHHhcccc---cCCHHH-H-----HHHcC--------CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHH
Confidence 9999999999986 334322 1 11111 1234677999999998653 3 3346899999999999
Q ss_pred HHHh
Q 004573 231 LDIT 234 (744)
Q Consensus 231 ~~i~ 234 (744)
+...
T Consensus 329 ~~~l 332 (903)
T PRK04841 329 RHRC 332 (903)
T ss_pred HHHH
Confidence 8765
No 43
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.95 E-value=2.7e-05 Score=81.31 Aligned_cols=59 Identities=17% Similarity=0.399 Sum_probs=24.8
Q ss_pred cccEEEeecccccccCCCCCCCCCCcccEEEcccC-CCCCCChhHHhcCCCCcEEEcCCCCCCccCCc
Q 004573 259 DVEKVSLMRCRITRIPSNFPSSGCRSLSTLLLQHN-YIEEIPEFFFEHLTGLKILDLSGNSNLLRLPD 325 (744)
Q Consensus 259 ~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~l~~~~~~~l~~L~~L~l~~~~~~~~lp~ 325 (744)
.+.+|+++++.+..+|. + -.+|++|.+.+| .+..+|..+ ..+|++|++++|..+..+|.
T Consensus 53 ~l~~L~Is~c~L~sLP~-L----P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 53 ASGRLYIKDCDIESLPV-L----PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred CCCEEEeCCCCCcccCC-C----CCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc
Confidence 34455555544444442 1 123445555443 333333322 13444445544444444443
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=1.3e-06 Score=84.48 Aligned_cols=138 Identities=16% Similarity=0.149 Sum_probs=83.4
Q ss_pred cccceeeeeccCCccccccCCCCCCcCCCcEEEEeecCCcceeecCccccchhhhhHHHHhcCccchh---hHhhhhhhh
Q 004573 489 RDIQQLHFNVCGGMRSLRDVPSLKDTTDLRECVIYRCYEMEFVFCLSSCYGILETLEYLLLQRLVDLK---AIFQIAEDE 565 (744)
Q Consensus 489 ~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~l~~L~~L~l~~~~~L~---~l~~~~~~~ 565 (744)
++|+.|+++.|.+++...--..+.+++.|..|+++.|.-........ ....-++|..|+|+++..-- .+..+.
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~-V~hise~l~~LNlsG~rrnl~~sh~~tL~--- 309 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVA-VAHISETLTQLNLSGYRRNLQKSHLSTLV--- 309 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHH-HhhhchhhhhhhhhhhHhhhhhhHHHHHH---
Confidence 35777777777777754211234667788888888886443321110 11123788888888874221 121111
Q ss_pred hccccccCCCCCCCceeEEEEEEEEecCCCcccccCCCcccCCCCccEEEEccccchhhhhccCCCCcccccccccCCCC
Q 004573 566 VNASSLRTQTPSPPNIVFRLKRLIMSDCGKIRKLFSPELLPSLQNLEEIQVKYCGGLEEIIAASDDDEEGENNEAAGNNS 645 (744)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~ 645 (744)
..+++|.+|++++|..|+.- -...+-.++.|++|.++.|..+.---.
T Consensus 310 --------------~rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRCY~i~p~~~------------------ 356 (419)
T KOG2120|consen 310 --------------RRCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRCYDIIPETL------------------ 356 (419)
T ss_pred --------------HhCCceeeeccccccccCch-HHHHHHhcchheeeehhhhcCCChHHe------------------
Confidence 34458999999999888751 112345788999999999986532110
Q ss_pred cccccCCccceecccccc
Q 004573 646 IKSLALPKLRVLYLKELP 663 (744)
Q Consensus 646 ~~~~~lp~L~~L~l~~c~ 663 (744)
+.-...|+|..|++.+|-
T Consensus 357 ~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 357 LELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeeccCcceEEEEecccc
Confidence 000246788888888773
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.81 E-value=9e-07 Score=95.34 Aligned_cols=124 Identities=23% Similarity=0.269 Sum_probs=83.7
Q ss_pred CCcEEEcCCCCCCccCCccccCcccccEEeccCcccccCCcCccCCCCccEEEccCCCCcccccc-cccCCCCCEEeccC
Q 004573 308 GLKILDLSGNSNLLRLPDSISGLINLTALMVHGCFRLRHVPSLAKLSALKKLDLGGTEIDVVPQG-LEMLAHLTYLDLNW 386 (744)
Q Consensus 308 ~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~ 386 (744)
.|.+.+.+ |+.+..+-.++.-+.+|+.|+|++| ++.....+..+.+|++|||+.|.+..+|.- +... +|+.|++++
T Consensus 165 ~L~~a~fs-yN~L~~mD~SLqll~ale~LnLshN-k~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFS-YNRLVLMDESLQLLPALESLNLSHN-KFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRN 241 (1096)
T ss_pred hHhhhhcc-hhhHHhHHHHHHHHHHhhhhccchh-hhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecc
Confidence 45555556 3335555566667777888888876 344444677788888888888877777753 2233 378888888
Q ss_pred ccccccCCCccCCCCCCcEEEcCcccccc---chhhhcccCCcEEEeeecCCc
Q 004573 387 TRILQIPDGMLSNLSRIQHLRLDRVAFEN---AEDILRLMKLEIFGVRFDHLQ 436 (744)
Q Consensus 387 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---~~~l~~l~~L~~L~l~~~~~~ 436 (744)
|.++.+-. +.+|.+|+.|+++.|-+.. +..+..|..|+.|.+.+|++-
T Consensus 242 N~l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NALTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cHHHhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 87776643 5778888888888775443 355666777778888777653
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.77 E-value=2.5e-06 Score=92.61 Aligned_cols=168 Identities=29% Similarity=0.339 Sum_probs=92.8
Q ss_pred ccEEEeecccccccCCCCCCCCCCcccEEEcccCCCCCCChhHHhcCCCCcEEEcCCCCCCccCCccccCcccccEEecc
Q 004573 260 VEKVSLMRCRITRIPSNFPSSGCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINLTALMVH 339 (744)
Q Consensus 260 ~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~ 339 (744)
+..+++..|.+.++... ...+++|..|++..|.+..+... ...+.+|++|++++|. +..+.. +..+..|+.|++.
T Consensus 74 l~~l~l~~n~i~~~~~~--l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 74 LKELNLRQNLIAKILNH--LSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNLS 148 (414)
T ss_pred HHhhccchhhhhhhhcc--cccccceeeeeccccchhhcccc-hhhhhcchheeccccc-cccccc-hhhccchhhheec
Confidence 33344555555442221 24566777777777766665542 2456777777777443 444443 5666667777777
Q ss_pred CcccccCCcCccCCCCccEEEccCCCCcccccc-cccCCCCCEEeccCccccccCCCccCCCCCCcEEEcCccccccchh
Q 004573 340 GCFRLRHVPSLAKLSALKKLDLGGTEIDVVPQG-LEMLAHLTYLDLNWTRILQIPDGMLSNLSRIQHLRLDRVAFENAED 418 (744)
Q Consensus 340 ~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 418 (744)
+| .+..++.+..+.+|+.+++++|.+..+... +..+.+|+.+.+.++.+..+.. +..+..+..+++..+.+..+.+
T Consensus 149 ~N-~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~~ 225 (414)
T KOG0531|consen 149 GN-LISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLEG 225 (414)
T ss_pred cC-cchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccceeccC
Confidence 65 455555555566777777777766665443 4566666666666666554432 2333333344555555555444
Q ss_pred hhcccC--CcEEEeeecCC
Q 004573 419 ILRLMK--LEIFGVRFDHL 435 (744)
Q Consensus 419 l~~l~~--L~~L~l~~~~~ 435 (744)
+..+.. |+.+.+..+..
T Consensus 226 l~~~~~~~L~~l~l~~n~i 244 (414)
T KOG0531|consen 226 LNELVMLHLRELYLSGNRI 244 (414)
T ss_pred cccchhHHHHHHhcccCcc
Confidence 444443 55555554443
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.74 E-value=5.3e-06 Score=90.14 Aligned_cols=171 Identities=26% Similarity=0.373 Sum_probs=127.7
Q ss_pred ccccccEEEeecccccccCCCCCCCCCCcccEEEcccCCCCCCChhHHhcCCCCcEEEcCCCCCCccCCccccCcccccE
Q 004573 256 WKDDVEKVSLMRCRITRIPSNFPSSGCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINLTA 335 (744)
Q Consensus 256 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~ 335 (744)
...++..+++..|.+..+... ...+++|++|++++|.|..+.. +..+..|+.|++++|. +..+.. +..+..|+.
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~--l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~-i~~~~~-~~~l~~L~~ 166 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENL--LSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNL-ISDISG-LESLKSLKL 166 (414)
T ss_pred cccceeeeeccccchhhcccc--hhhhhcchheeccccccccccc--hhhccchhhheeccCc-chhccC-Cccchhhhc
Confidence 456789999999999887653 3678999999999999998876 5778889999999765 555554 677999999
Q ss_pred EeccCcccccCCcC--ccCCCCccEEEccCCCCcccccccccCCCCCEEeccCccccccCCCccCCCCC--CcEEEcCcc
Q 004573 336 LMVHGCFRLRHVPS--LAKLSALKKLDLGGTEIDVVPQGLEMLAHLTYLDLNWTRILQIPDGMLSNLSR--IQHLRLDRV 411 (744)
Q Consensus 336 L~l~~~~~l~~~~~--i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~l~~--L~~L~l~~~ 411 (744)
+++++|. +..++. ...+.+|+.+.+.++.+..+ .++..+..+..+++..+.+..+-. +..+.. |+.+++.++
T Consensus 167 l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~i-~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n 242 (414)
T KOG0531|consen 167 LDLSYNR-IVDIENDELSELISLEELDLGGNSIREI-EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGN 242 (414)
T ss_pred ccCCcch-hhhhhhhhhhhccchHHHhccCCchhcc-cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccC
Confidence 9999974 444554 58899999999999977655 344445555555777776665533 334444 788888888
Q ss_pred ccccc-hhhhcccCCcEEEeeecCCc
Q 004573 412 AFENA-EDILRLMKLEIFGVRFDHLQ 436 (744)
Q Consensus 412 ~~~~~-~~l~~l~~L~~L~l~~~~~~ 436 (744)
.+... ..+..+..+..|++..+...
T Consensus 243 ~i~~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 243 RISRSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred ccccccccccccccccccchhhcccc
Confidence 88777 67777888887777655443
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.73 E-value=2.8e-05 Score=53.88 Aligned_cols=40 Identities=33% Similarity=0.461 Sum_probs=28.8
Q ss_pred CCccEEEccCCCCcccccccccCCCCCEEeccCccccccC
Q 004573 354 SALKKLDLGGTEIDVVPQGLEMLAHLTYLDLNWTRILQIP 393 (744)
Q Consensus 354 ~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~ 393 (744)
++|++|++++|.++.+|..+++|++|++|++++|.+.+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3677788888888888777788888888888887776654
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=1.2e-06 Score=84.72 Aligned_cols=65 Identities=14% Similarity=0.095 Sum_probs=38.2
Q ss_pred cccceeeeeccCCccccccCCCC-CCcCCCcEEEEeecCCcceeecCccccchhhhhHHHHhcCccch
Q 004573 489 RDIQQLHFNVCGGMRSLRDVPSL-KDTTDLRECVIYRCYEMEFVFCLSSCYGILETLEYLLLQRLVDL 555 (744)
Q Consensus 489 ~~L~~L~l~~c~~l~~l~~~~~l-~~l~~L~~L~l~~c~~l~~l~~~~~~~~~l~~L~~L~l~~~~~L 555 (744)
+.|++|+++||..--....+..+ ..+|+|..|++++|..+.. ......-.|+.|+.|.++.|..+
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~--~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN--DCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc--hHHHHHHhcchheeeehhhhcCC
Confidence 45777777777532222122222 4578888888888876653 11111224788888888887543
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.68 E-value=0.0001 Score=77.02 Aligned_cols=117 Identities=27% Similarity=0.431 Sum_probs=74.5
Q ss_pred CCCcccEEEcccCCCCCCChhHHhcCCCCcEEEcCCCCCCccCCccccCcccccEEeccCcccccCCcCccCCCCccEEE
Q 004573 281 GCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINLTALMVHGCFRLRHVPSLAKLSALKKLD 360 (744)
Q Consensus 281 ~~~~L~~L~l~~~~l~~l~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~l~~~~~i~~l~~L~~L~ 360 (744)
.+++++.|++++|.+..+|. -..+|+.|.+++|..+..+|..+. .+|++|++++|..+..+|. +|++|+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~----LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~-----sLe~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV----LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE-----SVRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC----CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc-----ccceEE
Confidence 35677788888777777762 134678888877777777776553 4778888887766655552 355555
Q ss_pred ccCC---CCcccccccccC------------------CCCCEEeccCccccccCCCccCCCCCCcEEEcCcc
Q 004573 361 LGGT---EIDVVPQGLEML------------------AHLTYLDLNWTRILQIPDGMLSNLSRIQHLRLDRV 411 (744)
Q Consensus 361 l~~~---~l~~lp~~i~~L------------------~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 411 (744)
+.++ .+..+|.++..| .+|++|++.+|.....|.. + ..+|+.|.++.+
T Consensus 119 L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~-L--P~SLk~L~ls~n 187 (426)
T PRK15386 119 IKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEK-L--PESLQSITLHIE 187 (426)
T ss_pred eCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCccc-c--cccCcEEEeccc
Confidence 6554 245666655444 2677788777775555533 2 246777777654
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.61 E-value=7.7e-06 Score=88.39 Aligned_cols=101 Identities=26% Similarity=0.307 Sum_probs=81.4
Q ss_pred CccCCCCccEEEccCCCCcccccccccCCCCCEEeccCccccccCCCccCCCCCCcEEEcCccccccchhhhcccCCcEE
Q 004573 349 SLAKLSALKKLDLGGTEIDVVPQGLEMLAHLTYLDLNWTRILQIPDGMLSNLSRIQHLRLDRVAFENAEDILRLMKLEIF 428 (744)
Q Consensus 349 ~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L 428 (744)
++.-++.|+.|+|++|++.+.. .+..+++|+||+++.|.+..+|.-....+. |+.|.+.+|....+.++.+|++|+.|
T Consensus 182 SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~gie~LksL~~L 259 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRGIENLKSLYGL 259 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhhhHHhhhhhhcc
Confidence 3556778999999999999885 889999999999999999988863333444 99999999999999999999999999
Q ss_pred EeeecCCcchHHhhhhhhccccc
Q 004573 429 GVRFDHLQDYHRYLSLQSRRRLS 451 (744)
Q Consensus 429 ~l~~~~~~~~~~~~~~~~~~~L~ 451 (744)
++++|-+.+.........+..|.
T Consensus 260 DlsyNll~~hseL~pLwsLs~L~ 282 (1096)
T KOG1859|consen 260 DLSYNLLSEHSELEPLWSLSSLI 282 (1096)
T ss_pred chhHhhhhcchhhhHHHHHHHHH
Confidence 99998776655544444443333
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.48 E-value=4.4e-05 Score=86.69 Aligned_cols=85 Identities=22% Similarity=0.276 Sum_probs=38.3
Q ss_pred cCCCCccEEEccCCCCcccccccccCCCCCEEeccCccccccC-CCccCCCCCCcEEEcCccccccc--------hhhhc
Q 004573 351 AKLSALKKLDLGGTEIDVVPQGLEMLAHLTYLDLNWTRILQIP-DGMLSNLSRIQHLRLDRVAFENA--------EDILR 421 (744)
Q Consensus 351 ~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~--------~~l~~ 421 (744)
.++++|..||+++|++..+ .++++|++|+.|.+++-.+.... -..+-+|++|+.||++....... +--..
T Consensus 170 ~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~ 248 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV 248 (699)
T ss_pred hccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence 3445555555555555544 45555555555554443332211 01134455555555554221111 11223
Q ss_pred ccCCcEEEeeecCCc
Q 004573 422 LMKLEIFGVRFDHLQ 436 (744)
Q Consensus 422 l~~L~~L~l~~~~~~ 436 (744)
|++|+.|++++....
T Consensus 249 LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 249 LPELRFLDCSGTDIN 263 (699)
T ss_pred CccccEEecCCcchh
Confidence 566666666655443
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.24 E-value=0.00024 Score=80.75 Aligned_cols=129 Identities=20% Similarity=0.243 Sum_probs=84.3
Q ss_pred ccccEEEeecccccccCCCC---CCCCCCcccEEEcccCCCCCC-ChhHHhcCCCCcEEEcCCCCCCccCCccccCcccc
Q 004573 258 DDVEKVSLMRCRITRIPSNF---PSSGCRSLSTLLLQHNYIEEI-PEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINL 333 (744)
Q Consensus 258 ~~~~~l~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~l~~l-~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L 333 (744)
.+++++++.+... +...+ ...-+|+|++|.+.+-.+..- -...+.++++|+.||+| ++++..+ .++++|+||
T Consensus 122 ~nL~~LdI~G~~~--~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS-~TnI~nl-~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSEL--FSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDIS-GTNISNL-SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccch--hhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecC-CCCccCc-HHHhccccH
Confidence 4566777665421 11111 124578999999988654321 12346789999999999 5567777 568999999
Q ss_pred cEEeccCccccc--CCcCccCCCCccEEEccCCCCcccccc-------cccCCCCCEEeccCcccc
Q 004573 334 TALMVHGCFRLR--HVPSLAKLSALKKLDLGGTEIDVVPQG-------LEMLAHLTYLDLNWTRIL 390 (744)
Q Consensus 334 ~~L~l~~~~~l~--~~~~i~~l~~L~~L~l~~~~l~~lp~~-------i~~L~~L~~L~l~~~~~~ 390 (744)
+.|.+.+=.... .+-.+-+|++|++||++......-+.- -..|++||.||.+++.+.
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 999887633222 222577899999999998744433311 134888999988887553
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.18 E-value=0.00038 Score=48.24 Aligned_cols=42 Identities=29% Similarity=0.457 Sum_probs=33.0
Q ss_pred CCCCEEeccCccccccCCCccCCCCCCcEEEcCccccccchhh
Q 004573 377 AHLTYLDLNWTRILQIPDGMLSNLSRIQHLRLDRVAFENAEDI 419 (744)
Q Consensus 377 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l 419 (744)
++|++|++++|.+..+|+. +++|++|+.|++++|.+..++.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N~i~~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPE-LSNLPNLETLNLSNNPISDISPL 42 (44)
T ss_dssp TT-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSSCCSBEGGG
T ss_pred CcceEEEccCCCCcccCch-HhCCCCCCEEEecCCCCCCCcCC
Confidence 4789999999999988875 78999999999999887766544
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.86 E-value=0.0021 Score=59.47 Aligned_cols=105 Identities=28% Similarity=0.306 Sum_probs=58.1
Q ss_pred cccccEEEeecccccccCCCCCCCCCCcccEEEcccCCCCCCChhHHhcCCCCcEEEcCCCCCCccCCccccCcccccEE
Q 004573 257 KDDVEKVSLMRCRITRIPSNFPSSGCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINLTAL 336 (744)
Q Consensus 257 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L 336 (744)
.+....++++.|.+..++. ++.++.|.+|.+.+|.|..+.+.+-.-+++|..|.|.+|+ +..+
T Consensus 41 ~d~~d~iDLtdNdl~~l~~---lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l------------- 103 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDN---LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQEL------------- 103 (233)
T ss_pred ccccceecccccchhhccc---CCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhh-------------
Confidence 3455566666666665554 4566677777777777776666655555667777777443 3322
Q ss_pred eccCcccccCCcCccCCCCccEEEccCCCCccccc----ccccCCCCCEEeccC
Q 004573 337 MVHGCFRLRHVPSLAKLSALKKLDLGGTEIDVVPQ----GLEMLAHLTYLDLNW 386 (744)
Q Consensus 337 ~l~~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~l~~ 386 (744)
.++..+..++.|++|.+-+|.++..+. -+.++++|+.||+..
T Consensus 104 --------~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 104 --------GDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred --------hhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 122223334455555555554443322 245566666666544
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.00033 Score=68.28 Aligned_cols=23 Identities=9% Similarity=-0.019 Sum_probs=13.4
Q ss_pred CCCCCcCCCcEEEEeecCCccee
Q 004573 509 PSLKDTTDLRECVIYRCYEMEFV 531 (744)
Q Consensus 509 ~~l~~l~~L~~L~l~~c~~l~~l 531 (744)
-.+..++.|..|.+.+.+-++.+
T Consensus 243 D~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 243 DALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred HHHcCCchhheeeccCCcccccc
Confidence 34556666777766665544433
No 57
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.83 E-value=0.00042 Score=69.26 Aligned_cols=63 Identities=13% Similarity=0.163 Sum_probs=32.0
Q ss_pred ccCCCCCEEeccCccccccCC----CccCCCCCCcEEEcCccccccc------hhhhcccCCcEEEeeecCCc
Q 004573 374 EMLAHLTYLDLNWTRILQIPD----GMLSNLSRIQHLRLDRVAFENA------EDILRLMKLEIFGVRFDHLQ 436 (744)
Q Consensus 374 ~~L~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~------~~l~~l~~L~~L~l~~~~~~ 436 (744)
++-++|+.+....|++...+. ..+...+.|+.+.+..|.+..- ..+..+++|++|++..|.+.
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 344556666665555443332 1233445566666655543321 44555666666666655443
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.63 E-value=0.0036 Score=57.93 Aligned_cols=104 Identities=25% Similarity=0.300 Sum_probs=63.8
Q ss_pred CCcEEEcCCCCCCccCCccccCcccccEEeccCcccccCCcCcc-CCCCccEEEccCCCCcccc--cccccCCCCCEEec
Q 004573 308 GLKILDLSGNSNLLRLPDSISGLINLTALMVHGCFRLRHVPSLA-KLSALKKLDLGGTEIDVVP--QGLEMLAHLTYLDL 384 (744)
Q Consensus 308 ~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~l~~~~~i~-~l~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l 384 (744)
..-.+||++| .+..++. +..+..|.+|.+.+|.....-|.+. .+++|..|.+.+|++.++- ..+..+++|++|.+
T Consensus 43 ~~d~iDLtdN-dl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDN-DLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceeccccc-chhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 3444555533 2333333 4555556666665553333333333 3456888888888777553 24677889999999
Q ss_pred cCccccccC---CCccCCCCCCcEEEcCcccc
Q 004573 385 NWTRILQIP---DGMLSNLSRIQHLRLDRVAF 413 (744)
Q Consensus 385 ~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~ 413 (744)
-+|.+..-. .-++..+++|++|+..+...
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 888765433 22477899999999886543
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.53 E-value=0.00039 Score=59.95 Aligned_cols=76 Identities=30% Similarity=0.412 Sum_probs=31.8
Q ss_pred ccEEEeecccccccCCCCCCCCCCcccEEEcccCCCCCCChhHHhcCCCCcEEEcCCCCCCccCCccccCcccccEEec
Q 004573 260 VEKVSLMRCRITRIPSNFPSSGCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINLTALMV 338 (744)
Q Consensus 260 ~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l 338 (744)
+..+++++|.++.+|..+ ...++.+++|++.+|.+.++|.. +..++.||.|+++.|. +...|.-+..|.+|-+|+.
T Consensus 55 l~~i~ls~N~fk~fp~kf-t~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 55 LTKISLSDNGFKKFPKKF-TIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred EEEEecccchhhhCCHHH-hhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcC
Confidence 344444444444444322 22333444444444444444444 2344444444444222 3333333333444433333
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.42 E-value=0.0015 Score=62.99 Aligned_cols=104 Identities=27% Similarity=0.234 Sum_probs=54.6
Q ss_pred CCcccEEEcccCCCCCCChhHHhcCCCCcEEEcCCC--CCCccCCccccCcccccEEeccCccc--ccCCcCccCCCCcc
Q 004573 282 CRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGN--SNLLRLPDSISGLINLTALMVHGCFR--LRHVPSLAKLSALK 357 (744)
Q Consensus 282 ~~~L~~L~l~~~~l~~l~~~~~~~l~~L~~L~l~~~--~~~~~lp~~i~~l~~L~~L~l~~~~~--l~~~~~i~~l~~L~ 357 (744)
+.+|..|.+.+..++.+.. |..+++|+.|+++.| .....++....++++|++|++++|.. ++.++.+.++.+|.
T Consensus 42 ~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 3444444444444433322 334666777777755 33334444445556677777666532 23444566667777
Q ss_pred EEEccCCCCccccc----ccccCCCCCEEeccCc
Q 004573 358 KLDLGGTEIDVVPQ----GLEMLAHLTYLDLNWT 387 (744)
Q Consensus 358 ~L~l~~~~l~~lp~----~i~~L~~L~~L~l~~~ 387 (744)
.|++.+|....+-. .+.-+++|.+|+-...
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 77777775544321 1334556665554433
No 61
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.42 E-value=0.00039 Score=69.49 Aligned_cols=153 Identities=16% Similarity=0.134 Sum_probs=78.6
Q ss_pred CCcccEEEcccCCCCCCChhH-------------HhcCCCCcEEEcCCCCCCccC-----CccccCcccccEEeccCccc
Q 004573 282 CRSLSTLLLQHNYIEEIPEFF-------------FEHLTGLKILDLSGNSNLLRL-----PDSISGLINLTALMVHGCFR 343 (744)
Q Consensus 282 ~~~L~~L~l~~~~l~~l~~~~-------------~~~l~~L~~L~l~~~~~~~~l-----p~~i~~l~~L~~L~l~~~~~ 343 (744)
+..|+.|.+.+|.+....... ...-+.||++....|. +..- ...+...+.|+.+.+..+..
T Consensus 119 ~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I 197 (382)
T KOG1909|consen 119 CTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQSHPTLEEVRLSQNGI 197 (382)
T ss_pred ccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHHhccccceEEEecccc
Confidence 556666666666544222111 1234456666665433 2221 12234445555555555422
Q ss_pred cc-CC---c-CccCCCCccEEEccCCCCc-----ccccccccCCCCCEEeccCccccccC-----CCccCCCCCCcEEEc
Q 004573 344 LR-HV---P-SLAKLSALKKLDLGGTEID-----VVPQGLEMLAHLTYLDLNWTRILQIP-----DGMLSNLSRIQHLRL 408 (744)
Q Consensus 344 l~-~~---~-~i~~l~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~~~~~-----~~~l~~l~~L~~L~l 408 (744)
-. .. - .+..+++|++|||+.|.++ .+-+.+..+++|+.|++++|.+..-- ...-...++|+.|.+
T Consensus 198 ~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l 277 (382)
T KOG1909|consen 198 RPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLEL 277 (382)
T ss_pred cCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceecc
Confidence 11 11 0 2456667777777776444 23344566667777777777554211 111123566777777
Q ss_pred Cccccccc------hhhhcccCCcEEEeeecCC
Q 004573 409 DRVAFENA------EDILRLMKLEIFGVRFDHL 435 (744)
Q Consensus 409 ~~~~~~~~------~~l~~l~~L~~L~l~~~~~ 435 (744)
.+|.+... ..+...+.|..|.+.+|.+
T Consensus 278 ~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 278 AGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 77655432 3344567777777777765
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.26 E-value=0.00045 Score=59.58 Aligned_cols=60 Identities=18% Similarity=0.301 Sum_probs=33.1
Q ss_pred CCCcccEEEcccCCCCCCChhHHhcCCCCcEEEcCCCCCCccCCccccCcccccEEeccCc
Q 004573 281 GCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINLTALMVHGC 341 (744)
Q Consensus 281 ~~~~L~~L~l~~~~l~~l~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~ 341 (744)
....|...++++|.++.+|+.+-..++.+..|+++ ++.+..+|..+..++.|+.|+++.|
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~-~neisdvPeE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLA-NNEISDVPEELAAMPALRSLNLRFN 110 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcc-hhhhhhchHHHhhhHHhhhcccccC
Confidence 33455556666666666666555555556666666 3345555555555555555444444
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.14 E-value=0.0035 Score=60.56 Aligned_cols=97 Identities=25% Similarity=0.291 Sum_probs=47.9
Q ss_pred cccEEeccCcccccCCcCccCCCCccEEEccCC--CCc-ccccccccCCCCCEEeccCccccc---cCCCccCCCCCCcE
Q 004573 332 NLTALMVHGCFRLRHVPSLAKLSALKKLDLGGT--EID-VVPQGLEMLAHLTYLDLNWTRILQ---IPDGMLSNLSRIQH 405 (744)
Q Consensus 332 ~L~~L~l~~~~~l~~~~~i~~l~~L~~L~l~~~--~l~-~lp~~i~~L~~L~~L~l~~~~~~~---~~~~~l~~l~~L~~ 405 (744)
+|++|++.++ .++.+.++-.|++|++|.++.| .+. .++.-..++++|++|++++|++.. +++ +..+.+|..
T Consensus 44 ~le~ls~~n~-gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~~ 120 (260)
T KOG2739|consen 44 ELELLSVINV-GLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLKS 120 (260)
T ss_pred chhhhhhhcc-ceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcchhh
Confidence 3334443332 2333334445556666666665 333 344444445666666666665442 222 345555666
Q ss_pred EEcCccccccc-----hhhhcccCCcEEEee
Q 004573 406 LRLDRVAFENA-----EDILRLMKLEIFGVR 431 (744)
Q Consensus 406 L~l~~~~~~~~-----~~l~~l~~L~~L~l~ 431 (744)
|++.+|..... ..+.-+++|+.|+..
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 66666654443 233344566665543
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.02 E-value=0.00027 Score=68.24 Aligned_cols=98 Identities=24% Similarity=0.294 Sum_probs=56.7
Q ss_pred cccccEEeccCcccccCCcCccCCCCccEEEccCCCCcccccccccCCCCCEEeccCccccccCC-CccCCCCCCcEEEc
Q 004573 330 LINLTALMVHGCFRLRHVPSLAKLSALKKLDLGGTEIDVVPQGLEMLAHLTYLDLNWTRILQIPD-GMLSNLSRIQHLRL 408 (744)
Q Consensus 330 l~~L~~L~l~~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l 408 (744)
+.+.+.|+..|| .+.++.-+.+++.|++|.|+-|+|+.+ ..+..+++|+.|+|+.|.|.++.. ..+.++++|++|.+
T Consensus 18 l~~vkKLNcwg~-~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCC-CccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 334455555555 445554556666677777777666666 345566666777766666554432 12456677777777
Q ss_pred Cccccccc-------hhhhcccCCcEEE
Q 004573 409 DRVAFENA-------EDILRLMKLEIFG 429 (744)
Q Consensus 409 ~~~~~~~~-------~~l~~l~~L~~L~ 429 (744)
..|..... .-+.-|++|++|+
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 66543322 3455566666654
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.01 E-value=0.0012 Score=73.65 Aligned_cols=35 Identities=29% Similarity=0.400 Sum_probs=23.8
Q ss_pred cccccEEeccCcccccCC---cCccCCCCccEEEccCC
Q 004573 330 LINLTALMVHGCFRLRHV---PSLAKLSALKKLDLGGT 364 (744)
Q Consensus 330 l~~L~~L~l~~~~~l~~~---~~i~~l~~L~~L~l~~~ 364 (744)
.++|+.|.+.+|..+..- +......+|+.|+++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 224 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGC 224 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCc
Confidence 577777778777666542 24566777777777763
No 66
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.99 E-value=0.075 Score=54.05 Aligned_cols=104 Identities=13% Similarity=0.144 Sum_probs=66.5
Q ss_pred CCceEEEEEcCCCCcc--ccccccC---CCCCCCCCcEEEEEecchhHHHhc--------C---CeeEecCCCCHHHHHH
Q 004573 4 ERKRYVLILDDVWKRF--SLDEVGI---PEPTVDNGCKLVLTTRLKEVARSM--------G---CEVIPVDLLSEDEALR 67 (744)
Q Consensus 4 ~~kr~LiVLDDv~~~~--~~~~l~~---~~~~~~~gsriivTTR~~~v~~~~--------~---~~~~~l~~L~~~~~~~ 67 (744)
.+++++||+||++... .++.+.. ...+......|++|.... ..... . ...+.+++++.+|..+
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~ 199 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETRE 199 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHH
Confidence 5788999999999853 3444331 111222333556665432 22111 1 1467899999999999
Q ss_pred HHHHHhCCCC-CCC-CCHHHHHHHHHHHhcCCcHHHHHHHHhh
Q 004573 68 LFSKHVGDYL-LRI-PTIEPILKQVVEQCAGLPLAIVTVASSM 108 (744)
Q Consensus 68 Lf~~~~~~~~-~~~-~~~~~~~~~i~~~c~glPLai~~~~~~L 108 (744)
++...+.... ... .-..+..+.|++.++|.|..|..++..+
T Consensus 200 ~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 200 YIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9887653211 111 2235788999999999999998888875
No 67
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=0.0024 Score=62.44 Aligned_cols=83 Identities=28% Similarity=0.324 Sum_probs=46.1
Q ss_pred CCCcccEEEcccCCCCCCCh--hHHhcCCCCcEEEcCCCCCCccCCccc-cCcccccEEeccCcccc-cCCc-CccCCCC
Q 004573 281 GCRSLSTLLLQHNYIEEIPE--FFFEHLTGLKILDLSGNSNLLRLPDSI-SGLINLTALMVHGCFRL-RHVP-SLAKLSA 355 (744)
Q Consensus 281 ~~~~L~~L~l~~~~l~~l~~--~~~~~l~~L~~L~l~~~~~~~~lp~~i-~~l~~L~~L~l~~~~~l-~~~~-~i~~l~~ 355 (744)
.+..++.+++.+|.+..-.+ .++.++++|++|+++.| .+...-.++ ..+.+|++|.|.|...- .... .+..++.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 45677777777776654322 34567788888888843 333222222 35567777777764211 1111 2455555
Q ss_pred ccEEEccCC
Q 004573 356 LKKLDLGGT 364 (744)
Q Consensus 356 L~~L~l~~~ 364 (744)
++.|.++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 566655555
No 68
>PRK06893 DNA replication initiation factor; Validated
Probab=95.72 E-value=0.016 Score=57.28 Aligned_cols=94 Identities=11% Similarity=0.105 Sum_probs=61.2
Q ss_pred EEEEEcCCCCc---ccccc-ccCCCCC-CCCCcEEEEEecc----------hhHHHhcCC-eeEecCCCCHHHHHHHHHH
Q 004573 8 YVLILDDVWKR---FSLDE-VGIPEPT-VDNGCKLVLTTRL----------KEVARSMGC-EVIPVDLLSEDEALRLFSK 71 (744)
Q Consensus 8 ~LiVLDDv~~~---~~~~~-l~~~~~~-~~~gsriivTTR~----------~~v~~~~~~-~~~~l~~L~~~~~~~Lf~~ 71 (744)
-+|||||+|.. .+|+. +...+.. ...|++|||||.+ +++...++. .+++++++++++.++++.+
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 38999999973 44552 2222211 1346666555443 466666665 7899999999999999999
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHhcCCcHHHHH
Q 004573 72 HVGDYLLRIPTIEPILKQVVEQCAGLPLAIVT 103 (744)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 103 (744)
.+.... ..--+++..-|++++.|-.-++..
T Consensus 173 ~a~~~~--l~l~~~v~~~L~~~~~~d~r~l~~ 202 (229)
T PRK06893 173 NAYQRG--IELSDEVANFLLKRLDRDMHTLFD 202 (229)
T ss_pred HHHHcC--CCCCHHHHHHHHHhccCCHHHHHH
Confidence 885432 222346677788888876665543
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.56 E-value=0.051 Score=48.04 Aligned_cols=117 Identities=20% Similarity=0.367 Sum_probs=49.8
Q ss_pred CCCCCcccEEEcccCCCCCCChhHHhcCCCCcEEEcCCCCCCccCCc-cccCcccccEEeccCcccccCCc--CccCCCC
Q 004573 279 SSGCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLPD-SISGLINLTALMVHGCFRLRHVP--SLAKLSA 355 (744)
Q Consensus 279 ~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~l~~~~--~i~~l~~ 355 (744)
+..+.+|+.+.+.. .+..++...|..+..|+.+.+..+ +..++. .+.++.+|+.+.+.+ .+..++ .+....+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TT
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc--ccccccccccccccc
Confidence 45666777777664 466666666777777777777632 444433 345555667776654 222222 3555667
Q ss_pred ccEEEccCCCCcccccc-cccCCCCCEEeccCccccccCCCccCCCCCC
Q 004573 356 LKKLDLGGTEIDVVPQG-LEMLAHLTYLDLNWTRILQIPDGMLSNLSRI 403 (744)
Q Consensus 356 L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~l~~l~~L 403 (744)
|+.+++..+ +..++.. +.+. +|+.+.+.. .+..++...|.++++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 777776553 4444443 3444 666666543 4445555555555444
No 70
>PF05729 NACHT: NACHT domain
Probab=95.52 E-value=0.015 Score=54.04 Aligned_cols=71 Identities=24% Similarity=0.360 Sum_probs=49.5
Q ss_pred CCCceEEEEEcCCCCccc---------ccccc-CCCCC-CCCCcEEEEEecchhH--H-HhcCC-eeEecCCCCHHHHHH
Q 004573 3 KERKRYVLILDDVWKRFS---------LDEVG-IPEPT-VDNGCKLVLTTRLKEV--A-RSMGC-EVIPVDLLSEDEALR 67 (744)
Q Consensus 3 l~~kr~LiVLDDv~~~~~---------~~~l~-~~~~~-~~~gsriivTTR~~~v--~-~~~~~-~~~~l~~L~~~~~~~ 67 (744)
.+.++++||+|++++... +..+. .-++. ..++++||||||.... . ..... ..++++++++++..+
T Consensus 78 ~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 157 (166)
T PF05729_consen 78 EKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQ 157 (166)
T ss_pred HcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHH
Confidence 357899999999987432 11111 11111 2468999999998776 2 23333 589999999999999
Q ss_pred HHHHHh
Q 004573 68 LFSKHV 73 (744)
Q Consensus 68 Lf~~~~ 73 (744)
++.+..
T Consensus 158 ~~~~~f 163 (166)
T PF05729_consen 158 YLRKYF 163 (166)
T ss_pred HHHHHh
Confidence 998764
No 71
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.43 E-value=0.076 Score=59.97 Aligned_cols=198 Identities=18% Similarity=0.233 Sum_probs=121.4
Q ss_pred CceEEEEEcCCCCcc---ccccccCCCCCCCCCcEEEEEecchhHHHh----cCCeeEec----CCCCHHHHHHHHHHHh
Q 004573 5 RKRYVLILDDVWKRF---SLDEVGIPEPTVDNGCKLVLTTRLKEVARS----MGCEVIPV----DLLSEDEALRLFSKHV 73 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~---~~~~l~~~~~~~~~gsriivTTR~~~v~~~----~~~~~~~l----~~L~~~~~~~Lf~~~~ 73 (744)
.++..+||||-.-.. --+.+..-+...-.+=..|||||+..-... ......++ =.++.+|+-++|....
T Consensus 128 ~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~ 207 (894)
T COG2909 128 EGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG 207 (894)
T ss_pred cCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC
Confidence 356799999965432 122233223333456799999998743221 11112222 2578999999998764
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCCCCCCccchhhhh-hhhccCCCCh
Q 004573 74 GDYLLRIPTIEPILKQVVEQCAGLPLAIVTVASSMKSEDDVDLWKNALNELKENSTSVEGMGDEVIPRL-KFSYDRLMDP 152 (744)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l-~~sy~~L~~~ 152 (744)
+. +-...-++.+.+.-.|-+-|+..++=.++...+.+.--..+. +..+.+.+-| .--+|.|| +
T Consensus 208 ~l-----~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~Ls----------G~~~~l~dYL~eeVld~Lp-~ 271 (894)
T COG2909 208 SL-----PLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLS----------GAASHLSDYLVEEVLDRLP-P 271 (894)
T ss_pred CC-----CCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhcc----------chHHHHHHHHHHHHHhcCC-H
Confidence 22 233456788999999999999988888884444332111111 0011222222 22357888 7
Q ss_pred hhhHHHhhccCCCCCcccChHHHHHHHHHhCccccchhhhHHHHhHHHHHHHHHHccccccc--CCCcEEechHHHHHHH
Q 004573 153 KIKRCFLYCALFPEDFDIPKEELIEYWIVEGLIDVMETRQAMHYKGLAILHKLKENCLLESA--EDGKCVKMHDLVREMA 230 (744)
Q Consensus 153 ~~k~cfl~~s~fp~~~~i~~~~Li~~wiaeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~--~~~~~~~mHdli~~~~ 230 (744)
++|..++-+|+++.=. +.|+.. -..++.|..++++|.+++++-.. +.+..|+.|.++.||.
T Consensus 272 ~l~~FLl~~svl~~f~----~eL~~~-------------Ltg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL 334 (894)
T COG2909 272 ELRDFLLQTSVLSRFN----DELCNA-------------LTGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFL 334 (894)
T ss_pred HHHHHHHHHHhHHHhh----HHHHHH-------------HhcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHH
Confidence 9999999999874421 112211 22345678889999999987643 5568999999999998
Q ss_pred HHHhc
Q 004573 231 LDITT 235 (744)
Q Consensus 231 ~~i~~ 235 (744)
+.--.
T Consensus 335 ~~r~~ 339 (894)
T COG2909 335 RQRLQ 339 (894)
T ss_pred Hhhhc
Confidence 75443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.98 E-value=0.011 Score=33.91 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=12.1
Q ss_pred CccEEEccCCCCccccccccc
Q 004573 355 ALKKLDLGGTEIDVVPQGLEM 375 (744)
Q Consensus 355 ~L~~L~l~~~~l~~lp~~i~~ 375 (744)
+|++|++++|.++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655443
No 73
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.95 E-value=0.047 Score=54.01 Aligned_cols=97 Identities=13% Similarity=0.170 Sum_probs=52.7
Q ss_pred CceEEEEEcCCCCcc-cc----------ccccCCCCCCCCCcEEEEEecchhHHHh--------cCC-eeEecCCCCHHH
Q 004573 5 RKRYVLILDDVWKRF-SL----------DEVGIPEPTVDNGCKLVLTTRLKEVARS--------MGC-EVIPVDLLSEDE 64 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~-~~----------~~l~~~~~~~~~gsriivTTR~~~v~~~--------~~~-~~~~l~~L~~~~ 64 (744)
+++++||+||+.... .. ..+........+.+.| +++-...+... .+. ..+.+++++.++
T Consensus 117 ~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v-~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e 195 (234)
T PF01637_consen 117 GKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIV-ITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEE 195 (234)
T ss_dssp HCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEE-EEESSHHHHHHTT-TTSTTTT---EEEE----HHH
T ss_pred CCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEE-EECCchHHHHHhhcccCccccccceEEEeeCCHHH
Confidence 356999999998755 11 1112222222334444 44444444433 222 459999999999
Q ss_pred HHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCcHHHHH
Q 004573 65 ALRLFSKHVGDYLLRIPTIEPILKQVVEQCAGLPLAIVT 103 (744)
Q Consensus 65 ~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 103 (744)
+++++...+...... +.-.+...+|.+.+||.|..|..
T Consensus 196 ~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 196 AREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp HHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 999999876443111 22345568999999999998764
No 74
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.88 E-value=0.11 Score=54.63 Aligned_cols=157 Identities=10% Similarity=0.082 Sum_probs=86.4
Q ss_pred CcEEEEEecchhHHH----hcCCeeEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHhhc
Q 004573 34 GCKLVLTTRLKEVAR----SMGCEVIPVDLLSEDEALRLFSKHVGDYLLRIPTIEPILKQVVEQCAGLPLAIVTVASSMK 109 (744)
Q Consensus 34 gsriivTTR~~~v~~----~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~ 109 (744)
.+-|.+|||...+.. +++ ..+.+++++.++..+++.+.+.... ..-..+....|++.|+|.|-.+..+...+.
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~-~~~~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~ 227 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFG-IVQRLEFYTVEELEKIVKRSARILG--VEIDEEGALEIARRSRGTPRIANRLLRRVR 227 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcC-eeeecCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 456777777554433 232 5789999999999999998876532 223346788999999999965444433221
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCCccchhhhhhhhccCCCChhhhHHHh-hccCCCCCcccChHHHHHHHHHhCccccc
Q 004573 110 SEDDVDLWKNALNELKENSTSVEGMGDEVIPRLKFSYDRLMDPKIKRCFL-YCALFPEDFDIPKEELIEYWIVEGLIDVM 188 (744)
Q Consensus 110 ~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-~~s~fp~~~~i~~~~Li~~wiaeg~i~~~ 188 (744)
.|..+. ...... ...-......+...|..|+ +..+..+. ....|+.+ .+..+.+. ..+..
T Consensus 228 ------~~a~~~---~~~~I~-~~~v~~~l~~~~~~~~~l~-~~~~~~l~~~~~~~~~~-~~~~~~~a------~~lg~- 288 (328)
T PRK00080 228 ------DFAQVK---GDGVIT-KEIADKALDMLGVDELGLD-EMDRKYLRTIIEKFGGG-PVGLDTLA------AALGE- 288 (328)
T ss_pred ------HHHHHc---CCCCCC-HHHHHHHHHHhCCCcCCCC-HHHHHHHHHHHHHcCCC-ceeHHHHH------HHHCC-
Confidence 121110 000000 0001223344556677786 55555554 55666655 34443332 11111
Q ss_pred hhhhHHHHhHHHHHH-HHHHcccccccCCC
Q 004573 189 ETRQAMHYKGLAILH-KLKENCLLESAEDG 217 (744)
Q Consensus 189 ~~~~~~~~~~~~~~~-~L~~~~l~~~~~~~ 217 (744)
....++..++ .|++.+|++....|
T Consensus 289 -----~~~~~~~~~e~~Li~~~li~~~~~g 313 (328)
T PRK00080 289 -----ERDTIEDVYEPYLIQQGFIQRTPRG 313 (328)
T ss_pred -----CcchHHHHhhHHHHHcCCcccCCch
Confidence 1223444556 78899998755444
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.35 E-value=0.11 Score=45.94 Aligned_cols=106 Identities=13% Similarity=0.277 Sum_probs=58.6
Q ss_pred CChhHHhcCCCCcEEEcCCCCCCccCC-ccccCcccccEEeccCcccccCCc--CccCCCCccEEEccCCCCcccccc-c
Q 004573 298 IPEFFFEHLTGLKILDLSGNSNLLRLP-DSISGLINLTALMVHGCFRLRHVP--SLAKLSALKKLDLGGTEIDVVPQG-L 373 (744)
Q Consensus 298 l~~~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~l~~~~--~i~~l~~L~~L~l~~~~l~~lp~~-i 373 (744)
++...|.++.+|+.+.+. . .+..++ ..+.++.+|+.+.+.+. +..++ .+..+.+|+.+.+.+ .+..++.. +
T Consensus 3 i~~~~F~~~~~l~~i~~~-~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F 77 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFP-N-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAF 77 (129)
T ss_dssp E-TTTTTT-TT--EEEET-S-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTT
T ss_pred ECHHHHhCCCCCCEEEEC-C-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccc
Confidence 456667888889999887 3 345554 34677778888888763 55555 477777788888866 45555543 4
Q ss_pred ccCCCCCEEeccCccccccCCCccCCCCCCcEEEcCc
Q 004573 374 EMLAHLTYLDLNWTRILQIPDGMLSNLSRIQHLRLDR 410 (744)
Q Consensus 374 ~~L~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 410 (744)
...++|+.+.+..+ +..++...+.+. +|+.+.+..
T Consensus 78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 55788888887654 556666667776 777777664
No 76
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.22 E-value=0.84 Score=47.32 Aligned_cols=157 Identities=10% Similarity=0.036 Sum_probs=84.9
Q ss_pred CcEEEEEecchhHHH----hcCCeeEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHhhc
Q 004573 34 GCKLVLTTRLKEVAR----SMGCEVIPVDLLSEDEALRLFSKHVGDYLLRIPTIEPILKQVVEQCAGLPLAIVTVASSMK 109 (744)
Q Consensus 34 gsriivTTR~~~v~~----~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~ 109 (744)
.+-|.+|||...+.. ++ ...+.+++++.+|..+++.+.+.... ..-..+....|++.|+|.|-.+..++..+
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~-~~~~~l~~l~~~e~~~il~~~~~~~~--~~~~~~al~~ia~~~~G~pR~~~~ll~~~- 205 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRF-GIILRLEFYTVEELAEIVSRSAGLLN--VEIEPEAALEIARRSRGTPRIANRLLRRV- 205 (305)
T ss_pred eEEEEecCCccccCHHHHhhc-ceEEEeCCCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHHhCCCcchHHHHHHHH-
Confidence 556777787654433 23 25789999999999999998875421 12234567889999999996655444432
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCCccchhhhhhhhccCCCChhhhHHHh-hccCCCCCcccChHHHHHHHHHhCccccc
Q 004573 110 SEDDVDLWKNALNELKENSTSVEGMGDEVIPRLKFSYDRLMDPKIKRCFL-YCALFPEDFDIPKEELIEYWIVEGLIDVM 188 (744)
Q Consensus 110 ~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-~~s~fp~~~~i~~~~Li~~wiaeg~i~~~ 188 (744)
|..+. ........ .+.-......+...|..++ ++.+..+. ..+.+..+ .+..+.+.... ..
T Consensus 206 -------~~~a~-~~~~~~it-~~~v~~~l~~l~~~~~~l~-~~~~~~L~al~~~~~~~-~~~~~~ia~~l------g~- 267 (305)
T TIGR00635 206 -------RDFAQ-VRGQKIIN-RDIALKALEMLMIDELGLD-EIDRKLLSVLIEQFQGG-PVGLKTLAAAL------GE- 267 (305)
T ss_pred -------HHHHH-HcCCCCcC-HHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHhCCC-cccHHHHHHHh------CC-
Confidence 11100 00000000 0000112222455677887 55555444 44555443 33333222111 11
Q ss_pred hhhhHHHHhHHHHHH-HHHHcccccccCCC
Q 004573 189 ETRQAMHYKGLAILH-KLKENCLLESAEDG 217 (744)
Q Consensus 189 ~~~~~~~~~~~~~~~-~L~~~~l~~~~~~~ 217 (744)
....+...++ .|+++++++....|
T Consensus 268 -----~~~~~~~~~e~~Li~~~li~~~~~g 292 (305)
T TIGR00635 268 -----DADTIEDVYEPYLLQIGFLQRTPRG 292 (305)
T ss_pred -----CcchHHHhhhHHHHHcCCcccCCch
Confidence 1224455667 69999999755444
No 77
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.56 E-value=0.022 Score=63.49 Aligned_cols=143 Identities=20% Similarity=0.167 Sum_probs=71.7
Q ss_pred CcCCCcEEEEeecCCcceeecCccccchhhhhHHHHhcCc-cchhhHhhhhhhhhccccccCCCCCCCceeEEEEEEEEe
Q 004573 513 DTTDLRECVIYRCYEMEFVFCLSSCYGILETLEYLLLQRL-VDLKAIFQIAEDEVNASSLRTQTPSPPNIVFRLKRLIMS 591 (744)
Q Consensus 513 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~l~~L~~L~l~~~-~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 591 (744)
..++|+.|.+.+|..+...... ......+.|+.|.++++ .......... ..-...+.+|+.|++.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------------~~~~~~~~~L~~l~l~ 251 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLD-ALALKCPNLEELDLSGCCLLITLSPLLL-------------LLLLSICRKLKSLDLS 251 (482)
T ss_pred hCchhhHhhhcccccCChhhHH-HHHhhCchhheecccCcccccccchhHh-------------hhhhhhcCCcCccchh
Confidence 3677888888877766542100 01113577777777763 1111110000 0000112267788888
Q ss_pred cCCCcccccCCCcccCCCCccEEEEccccchhhh--hccCCCCcccccccccCCCCcccccCCccceecccccccccccc
Q 004573 592 DCGKIRKLFSPELLPSLQNLEEIQVKYCGGLEEI--IAASDDDEEGENNEAAGNNSIKSLALPKLRVLYLKELPNLMSIC 669 (744)
Q Consensus 592 ~C~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i--~~~~~~~~~~~~~~~~~~~~~~~~~lp~L~~L~l~~c~~L~~l~ 669 (744)
.|..+++..-......+++|++|.+.+|..+++- .... ...|.|++|+++.|..++.-.
T Consensus 252 ~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~-------------------~~~~~L~~L~l~~c~~~~d~~ 312 (482)
T KOG1947|consen 252 GCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIA-------------------ERCPSLRELDLSGCHGLTDSG 312 (482)
T ss_pred hhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHH-------------------HhcCcccEEeeecCccchHHH
Confidence 8766554311111223678888887778764321 1111 247778888888887764321
Q ss_pred cccceeccCccceEEeccC
Q 004573 670 SRRSTLVCNSLETIVVLRC 688 (744)
Q Consensus 670 ~~~~~~~~~sL~~L~i~~C 688 (744)
.......++.|+.|.+.++
T Consensus 313 l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 313 LEALLKNCPNLRELKLLSL 331 (482)
T ss_pred HHHHHHhCcchhhhhhhhc
Confidence 1111333555555444443
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.42 E-value=0.056 Score=28.75 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=8.5
Q ss_pred CccceEEeccCCCCcccC
Q 004573 678 NSLETIVVLRCPEIKRLP 695 (744)
Q Consensus 678 ~sL~~L~i~~C~~L~~lP 695 (744)
++|++|++++|. |+++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 356677777766 66665
No 79
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.32 E-value=0.0056 Score=59.39 Aligned_cols=81 Identities=22% Similarity=0.281 Sum_probs=66.0
Q ss_pred CCCCccEEEccCCCCcccccccccCCCCCEEeccCccccccCCCccCCCCCCcEEEcCccccccch---hhhcccCCcEE
Q 004573 352 KLSALKKLDLGGTEIDVVPQGLEMLAHLTYLDLNWTRILQIPDGMLSNLSRIQHLRLDRVAFENAE---DILRLMKLEIF 428 (744)
Q Consensus 352 ~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~l~~l~~L~~L 428 (744)
.+.+.+.|+.-||.+..+ .-..+|+.|+.|.|+-|.|+.+.+ +..+++|++|++..|.+..+. -+.++++|+.|
T Consensus 17 dl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 456778899999998876 345789999999999999998866 789999999999999888874 45667778888
Q ss_pred EeeecCC
Q 004573 429 GVRFDHL 435 (744)
Q Consensus 429 ~l~~~~~ 435 (744)
.+..|+.
T Consensus 94 WL~ENPC 100 (388)
T KOG2123|consen 94 WLDENPC 100 (388)
T ss_pred hhccCCc
Confidence 7776543
No 80
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.74 E-value=0.064 Score=30.74 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=14.5
Q ss_pred ccceEEeccCCCCcccCcccc
Q 004573 679 SLETIVVLRCPEIKRLPVLLP 699 (744)
Q Consensus 679 sL~~L~i~~C~~L~~lP~~~~ 699 (744)
+|++|++++| +++.+|..++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSS-EESEEGTTTT
T ss_pred CccEEECCCC-cCEeCChhhc
Confidence 4677888887 7777777654
No 81
>PRK09087 hypothetical protein; Validated
Probab=92.32 E-value=0.63 Score=45.70 Aligned_cols=92 Identities=14% Similarity=0.119 Sum_probs=60.6
Q ss_pred EEEEEcCCCCcc----ccccccCCCCCCCCCcEEEEEecc---------hhHHHhcCC-eeEecCCCCHHHHHHHHHHHh
Q 004573 8 YVLILDDVWKRF----SLDEVGIPEPTVDNGCKLVLTTRL---------KEVARSMGC-EVIPVDLLSEDEALRLFSKHV 73 (744)
Q Consensus 8 ~LiVLDDv~~~~----~~~~l~~~~~~~~~gsriivTTR~---------~~v~~~~~~-~~~~l~~L~~~~~~~Lf~~~~ 73 (744)
-+|++|||.... .+-.+..... ..|..||+|++. +++..++.. .++++++++.++-.+++.+++
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 378889996531 1222222222 346679998873 445555555 799999999999999999987
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCcHHHHH
Q 004573 74 GDYLLRIPTIEPILKQVVEQCAGLPLAIVT 103 (744)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 103 (744)
.... ..--+++..-|++.+.|-.-++..
T Consensus 167 ~~~~--~~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 167 ADRQ--LYVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHcC--CCCCHHHHHHHHHHhhhhHHHHHH
Confidence 4421 122356777788888887766653
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.21 E-value=0.053 Score=50.51 Aligned_cols=43 Identities=23% Similarity=0.362 Sum_probs=20.4
Q ss_pred CCccceecccccccccccccccceeccCccceEEeccCCCCcc
Q 004573 651 LPKLRVLYLKELPNLMSICSRRSTLVCNSLETIVVLRCPEIKR 693 (744)
Q Consensus 651 lp~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~C~~L~~ 693 (744)
+++++.|++.+|..+.+++..-.....++||.|+|++||.+++
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 4455555555555554444322122345555555555555543
No 83
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.14 E-value=0.094 Score=27.88 Aligned_cols=16 Identities=31% Similarity=0.669 Sum_probs=6.3
Q ss_pred CccEEEccCCCCcccc
Q 004573 355 ALKKLDLGGTEIDVVP 370 (744)
Q Consensus 355 ~L~~L~l~~~~l~~lp 370 (744)
+|++|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555554443
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.13 E-value=0.025 Score=52.56 Aligned_cols=91 Identities=18% Similarity=0.230 Sum_probs=64.2
Q ss_pred EEEEEEEecCCCcccccCCCcccCCCCccEEEEccccchhhhhccCCCCcccccccccCCCCcccccCCccceecccccc
Q 004573 584 RLKRLIMSDCGKIRKLFSPELLPSLQNLEEIQVKYCGGLEEIIAASDDDEEGENNEAAGNNSIKSLALPKLRVLYLKELP 663 (744)
Q Consensus 584 ~L~~L~l~~C~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~lp~L~~L~l~~c~ 663 (744)
.++.++-++| .+... ..+.+..++.++.|.+.+|..+.+-.-.. +. ..+|+|+.|+|++|+
T Consensus 102 ~IeaVDAsds-~I~~e-Gle~L~~l~~i~~l~l~~ck~~dD~~L~~----------------l~-~~~~~L~~L~lsgC~ 162 (221)
T KOG3864|consen 102 KIEAVDASDS-SIMYE-GLEHLRDLRSIKSLSLANCKYFDDWCLER----------------LG-GLAPSLQDLDLSGCP 162 (221)
T ss_pred eEEEEecCCc-hHHHH-HHHHHhccchhhhheeccccchhhHHHHH----------------hc-ccccchheeeccCCC
Confidence 6778877776 33332 23345677888999999999887643111 11 368999999999999
Q ss_pred cccccccccceeccCccceEEeccCCCCccc
Q 004573 664 NLMSICSRRSTLVCNSLETIVVLRCPEIKRL 694 (744)
Q Consensus 664 ~L~~l~~~~~~~~~~sL~~L~i~~C~~L~~l 694 (744)
.+++-.- ..+..+++|+.|.+.+-|....+
T Consensus 163 rIT~~GL-~~L~~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 163 RITDGGL-ACLLKLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred eechhHH-HHHHHhhhhHHHHhcCchhhhch
Confidence 9988643 34667889999999887665543
No 85
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=90.85 E-value=0.18 Score=49.18 Aligned_cols=63 Identities=8% Similarity=0.127 Sum_probs=33.6
Q ss_pred cCCCCCEEeccCccccccCCC----ccCCCCCCcEEEcCccccccc-------hhhhcccCCcEEEeeecCCcc
Q 004573 375 MLAHLTYLDLNWTRILQIPDG----MLSNLSRIQHLRLDRVAFENA-------EDILRLMKLEIFGVRFDHLQD 437 (744)
Q Consensus 375 ~L~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~-------~~l~~l~~L~~L~l~~~~~~~ 437 (744)
+-+.|+......|++...+.. .+..-.+|+++.+..|.+..- .++..+++|+.|++..|.++.
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence 345666666666655444321 111224566666666654321 445566777777777665543
No 86
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=90.51 E-value=4 Score=44.07 Aligned_cols=191 Identities=13% Similarity=0.061 Sum_probs=97.5
Q ss_pred CceEEEEEcCCCCcc------ccccccCCCCCCCCCcE--EEEEecchhHHH--------hcCCeeEecCCCCHHHHHHH
Q 004573 5 RKRYVLILDDVWKRF------SLDEVGIPEPTVDNGCK--LVLTTRLKEVAR--------SMGCEVIPVDLLSEDEALRL 68 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~------~~~~l~~~~~~~~~gsr--iivTTR~~~v~~--------~~~~~~~~l~~L~~~~~~~L 68 (744)
+++.+||||+++.-. .+..+..... ...+++ ||.++....+.. ..+...+.+++++.++..+.
T Consensus 137 ~~~~viviDE~d~l~~~~~~~~l~~l~~~~~-~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~i 215 (394)
T PRK00411 137 DRVLIVALDDINYLFEKEGNDVLYSLLRAHE-EYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDI 215 (394)
T ss_pred CCEEEEEECCHhHhhccCCchHHHHHHHhhh-ccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHH
Confidence 466899999998732 2333322221 123333 666666554332 22335678999999999999
Q ss_pred HHHHhCCC---CCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHhh--c---CC--CCHHHHHHHHHHHHhcCCCCCCCccc
Q 004573 69 FSKHVGDY---LLRIP-TIEPILKQVVEQCAGLPLAIVTVASSM--K---SE--DDVDLWKNALNELKENSTSVEGMGDE 137 (744)
Q Consensus 69 f~~~~~~~---~~~~~-~~~~~~~~i~~~c~glPLai~~~~~~L--~---~~--~~~~~w~~~l~~l~~~~~~~~~~~~~ 137 (744)
+..++... ....+ .++.+++......|..+.|+.++-.+. . +. -+.+..+.+.+.+..
T Consensus 216 l~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~----------- 284 (394)
T PRK00411 216 LKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEI----------- 284 (394)
T ss_pred HHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHH-----------
Confidence 98876321 11111 123333333333455777776654321 1 11 145556666655421
Q ss_pred hhhhhhhhccCCCChhhhHHHhhccC-CCC-CcccChHHHHHHH--HHhCccccchhhhHHHHhHHHHHHHHHHcccccc
Q 004573 138 VIPRLKFSYDRLMDPKIKRCFLYCAL-FPE-DFDIPKEELIEYW--IVEGLIDVMETRQAMHYKGLAILHKLKENCLLES 213 (744)
Q Consensus 138 i~~~l~~sy~~L~~~~~k~cfl~~s~-fp~-~~~i~~~~Li~~w--iaeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 213 (744)
....-.+..|| .+.|..+..++- ... ...+...++.... +++.+-.. .........+++.|.+.++++.
T Consensus 285 --~~~~~~~~~L~-~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~----~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 285 --VHLSEVLRTLP-LHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYE----PRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred --HHHHHHHhcCC-HHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCC----cCcHHHHHHHHHHHHhcCCeEE
Confidence 22344577887 454443333331 221 1345555555432 22211000 0012334568889999999876
Q ss_pred c
Q 004573 214 A 214 (744)
Q Consensus 214 ~ 214 (744)
.
T Consensus 358 ~ 358 (394)
T PRK00411 358 R 358 (394)
T ss_pred E
Confidence 4
No 87
>COG3899 Predicted ATPase [General function prediction only]
Probab=88.43 E-value=2.4 Score=50.32 Aligned_cols=160 Identities=19% Similarity=0.229 Sum_probs=99.7
Q ss_pred eeEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHhhcCC------CCHHHHHHHHHHHHh
Q 004573 53 EVIPVDLLSEDEALRLFSKHVGDYLLRIPTIEPILKQVVEQCAGLPLAIVTVASSMKSE------DDVDLWKNALNELKE 126 (744)
Q Consensus 53 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~------~~~~~w~~~l~~l~~ 126 (744)
..+.+.||+..+.-.+.....+.. .....+....|+++-.|.|+-+.-+-..+... .+...|..-..++..
T Consensus 212 ~~I~L~PL~~~d~~~lV~~~l~~~---~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~ 288 (849)
T COG3899 212 TTITLAPLSRADTNQLVAATLGCT---KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI 288 (849)
T ss_pred eEEecCcCchhhHHHHHHHHhCCc---ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC
Confidence 789999999999999998776553 22344678899999999999998777776553 334455432222211
Q ss_pred cCCCCCCCccchhhhhhhhccCCCChhhhHHHhhccCCCCCcccChHHHHHHHHHhCccccchhhhHHHHhHHHHHHHHH
Q 004573 127 NSTSVEGMGDEVIPRLKFSYDRLMDPKIKRCFLYCALFPEDFDIPKEELIEYWIVEGLIDVMETRQAMHYKGLAILHKLK 206 (744)
Q Consensus 127 ~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~Li~~wiaeg~i~~~~~~~~~~~~~~~~~~~L~ 206 (744)
.+..+.+.+.+..-.+.|| ...+...-..|++-. .|+.+.|--.+-. .....+....+.|.
T Consensus 289 -----~~~~~~vv~~l~~rl~kL~-~~t~~Vl~~AA~iG~--~F~l~~La~l~~~-----------~~~~~a~~l~~al~ 349 (849)
T COG3899 289 -----LATTDAVVEFLAARLQKLP-GTTREVLKAAACIGN--RFDLDTLAALAED-----------SPALEAAALLDALQ 349 (849)
T ss_pred -----chhhHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCc--cCCHHHHHHHHhh-----------chHHHHHHHHHHhH
Confidence 1122335556888889998 788999999999854 4556655554421 12233444445554
Q ss_pred Hccccccc-----CC-CcEE---echHHHHHHHHHHh
Q 004573 207 ENCLLESA-----ED-GKCV---KMHDLVREMALDIT 234 (744)
Q Consensus 207 ~~~l~~~~-----~~-~~~~---~mHdli~~~~~~i~ 234 (744)
...++... .. .... -.||.+++.+-...
T Consensus 350 e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i 386 (849)
T COG3899 350 EGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLI 386 (849)
T ss_pred hhceeccccccccccccchhhHHhhHHHHHHHHhccC
Confidence 44444321 11 1112 46888877776543
No 88
>PF13173 AAA_14: AAA domain
Probab=88.07 E-value=0.38 Score=42.46 Aligned_cols=61 Identities=15% Similarity=0.036 Sum_probs=46.0
Q ss_pred CceEEEEEcCCCCccccccccCCCCCCCCCcEEEEEecchhHHHh------cCC-eeEecCCCCHHHH
Q 004573 5 RKRYVLILDDVWKRFSLDEVGIPEPTVDNGCKLVLTTRLKEVARS------MGC-EVIPVDLLSEDEA 65 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~~~~~l~~~~~~~~~gsriivTTR~~~v~~~------~~~-~~~~l~~L~~~~~ 65 (744)
.++.+||||+|.....|......+.+.++..+|++|+........ .|. ..++|.||+..|.
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 357889999999988888766666555566899999998877633 122 5789999998774
No 89
>PRK13342 recombination factor protein RarA; Reviewed
Probab=87.65 E-value=2.8 Score=45.46 Aligned_cols=100 Identities=16% Similarity=0.203 Sum_probs=61.9
Q ss_pred CCceEEEEEcCCCCcc--ccccccCCCCCCCCCcEEEE--Eecchh--HHHhcC--CeeEecCCCCHHHHHHHHHHHhCC
Q 004573 4 ERKRYVLILDDVWKRF--SLDEVGIPEPTVDNGCKLVL--TTRLKE--VARSMG--CEVIPVDLLSEDEALRLFSKHVGD 75 (744)
Q Consensus 4 ~~kr~LiVLDDv~~~~--~~~~l~~~~~~~~~gsriiv--TTR~~~--v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~ 75 (744)
.+++.+|++|+|+.-. +.+.+...+. .|..++| ||.+.. +..... ...+.+++++.++.+.++.+.+..
T Consensus 90 ~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 90 AGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHH
Confidence 3578899999999743 3444443332 3555554 344332 111111 168899999999999999987533
Q ss_pred CCCCC-CCHHHHHHHHHHHhcCCcHHHHHHHH
Q 004573 76 YLLRI-PTIEPILKQVVEQCAGLPLAIVTVAS 106 (744)
Q Consensus 76 ~~~~~-~~~~~~~~~i~~~c~glPLai~~~~~ 106 (744)
..... .-..+....|++.|+|-|..+..+..
T Consensus 167 ~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 167 KERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred hhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 11111 22356678899999999977654433
No 90
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=87.65 E-value=0.79 Score=44.90 Aligned_cols=87 Identities=20% Similarity=0.256 Sum_probs=48.6
Q ss_pred CccCCCCccEEEccCCCCc-cccc----ccccCCCCCEEeccCccccccCCCccC-------------CCCCCcEEEcCc
Q 004573 349 SLAKLSALKKLDLGGTEID-VVPQ----GLEMLAHLTYLDLNWTRILQIPDGMLS-------------NLSRIQHLRLDR 410 (744)
Q Consensus 349 ~i~~l~~L~~L~l~~~~l~-~lp~----~i~~L~~L~~L~l~~~~~~~~~~~~l~-------------~l~~L~~L~l~~ 410 (744)
.+-++++|+..+|+.|-+. ..|. -|.+-+.|.||.+.+|.+..+..+-++ +-+.|+...+.+
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 3556677777777777544 3333 256667777887777766544332222 345566666666
Q ss_pred cccccc------hhhhcccCCcEEEeeecCC
Q 004573 411 VAFENA------EDILRLMKLEIFGVRFDHL 435 (744)
Q Consensus 411 ~~~~~~------~~l~~l~~L~~L~l~~~~~ 435 (744)
|++... ..+..-.+|+.+.+..|.+
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgI 197 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGI 197 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCc
Confidence 655432 2222224566666655544
No 91
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=87.59 E-value=1 Score=44.20 Aligned_cols=97 Identities=11% Similarity=0.118 Sum_probs=59.1
Q ss_pred EEEEEcCCCCcc---ccc-cccCCCCC-CCCCcEEEEEecch---------hHHHhcC-CeeEecCCCCHHHHHHHHHHH
Q 004573 8 YVLILDDVWKRF---SLD-EVGIPEPT-VDNGCKLVLTTRLK---------EVARSMG-CEVIPVDLLSEDEALRLFSKH 72 (744)
Q Consensus 8 ~LiVLDDv~~~~---~~~-~l~~~~~~-~~~gsriivTTR~~---------~v~~~~~-~~~~~l~~L~~~~~~~Lf~~~ 72 (744)
-+||+|||.... .|. .+...+.. ...+.+||+||+.. .+...+. ...++++++++++-..++.+.
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~ 171 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSR 171 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHH
Confidence 389999998643 232 23222211 12334789988743 2233343 268899999999999998876
Q ss_pred hCCCCCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Q 004573 73 VGDYLLRIPTIEPILKQVVEQCAGLPLAIVTVAS 106 (744)
Q Consensus 73 ~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 106 (744)
+.... .+--.+..+.+++.++|.|..+..+..
T Consensus 172 ~~~~~--~~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 172 AARRG--LQLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 43211 122345667788888888887765433
No 92
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.29 E-value=0.54 Score=28.09 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=10.2
Q ss_pred CCCCEEeccCccccccCCCc
Q 004573 377 AHLTYLDLNWTRILQIPDGM 396 (744)
Q Consensus 377 ~~L~~L~l~~~~~~~~~~~~ 396 (744)
++|++|++.+|.+..+|.++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 44555555555555555443
No 93
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.29 E-value=0.54 Score=28.09 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=10.2
Q ss_pred CCCCEEeccCccccccCCCc
Q 004573 377 AHLTYLDLNWTRILQIPDGM 396 (744)
Q Consensus 377 ~~L~~L~l~~~~~~~~~~~~ 396 (744)
++|++|++.+|.+..+|.++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 44555555555555555443
No 94
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=86.02 E-value=23 Score=37.67 Aligned_cols=192 Identities=14% Similarity=0.081 Sum_probs=99.4
Q ss_pred CceEEEEEcCCCCcc-c----cccccCC--CCC-CCCCcEEEEEecchhHHH--------hcCCeeEecCCCCHHHHHHH
Q 004573 5 RKRYVLILDDVWKRF-S----LDEVGIP--EPT-VDNGCKLVLTTRLKEVAR--------SMGCEVIPVDLLSEDEALRL 68 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~-~----~~~l~~~--~~~-~~~gsriivTTR~~~v~~--------~~~~~~~~l~~L~~~~~~~L 68 (744)
+++++||||+++.-. . +..+... ... .+..-.+|++|+...... .++...+.+++++.+|-.+.
T Consensus 128 ~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~i 207 (365)
T TIGR02928 128 GDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDI 207 (365)
T ss_pred CCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHH
Confidence 567899999998751 1 2222211 111 112334555565443322 22224688999999999999
Q ss_pred HHHHhC---CCCCCCCCHHHHHHHHHHHhcCCcHHH-HHHHHhh----c-CC--CCHHHHHHHHHHHHhcCCCCCCCccc
Q 004573 69 FSKHVG---DYLLRIPTIEPILKQVVEQCAGLPLAI-VTVASSM----K-SE--DDVDLWKNALNELKENSTSVEGMGDE 137 (744)
Q Consensus 69 f~~~~~---~~~~~~~~~~~~~~~i~~~c~glPLai-~~~~~~L----~-~~--~~~~~w~~~l~~l~~~~~~~~~~~~~ 137 (744)
+..++. ......++..+...+++....|-|-.+ .++-.+. . +. -+.+..+.+.+.+..
T Consensus 208 l~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~----------- 276 (365)
T TIGR02928 208 LENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIEK----------- 276 (365)
T ss_pred HHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH-----------
Confidence 998763 211122233344556677777888443 3222211 1 11 234444555444321
Q ss_pred hhhhhhhhccCCCChhhhHHHhhccCC--CCCcccChHHHHHHHH--HhCccccchhhhHHHHhHHHHHHHHHHcccccc
Q 004573 138 VIPRLKFSYDRLMDPKIKRCFLYCALF--PEDFDIPKEELIEYWI--VEGLIDVMETRQAMHYKGLAILHKLKENCLLES 213 (744)
Q Consensus 138 i~~~l~~sy~~L~~~~~k~cfl~~s~f--p~~~~i~~~~Li~~wi--aeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 213 (744)
....-....|| .+.|..+..++.. .++..+...++...+- ++.+ .. ....+.....+++.|...++++.
T Consensus 277 --~~~~~~i~~l~-~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~---~~~~~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 277 --DRLLELIRGLP-THSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDI-GV---DPLTQRRISDLLNELDMLGLVEA 349 (365)
T ss_pred --HHHHHHHHcCC-HHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhc-CC---CCCcHHHHHHHHHHHHhcCCeEE
Confidence 12233556787 5655444444311 1344567777766442 2211 10 11223456678888999999886
Q ss_pred c
Q 004573 214 A 214 (744)
Q Consensus 214 ~ 214 (744)
.
T Consensus 350 ~ 350 (365)
T TIGR02928 350 E 350 (365)
T ss_pred E
Confidence 5
No 95
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=85.78 E-value=1.9 Score=41.06 Aligned_cols=88 Identities=20% Similarity=0.293 Sum_probs=57.5
Q ss_pred CceEEEEEcCCCCcc--ccccccCCCCCCCCCcEEEEEecch-hHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKRF--SLDEVGIPEPTVDNGCKLVLTTRLK-EVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~--~~~~l~~~~~~~~~gsriivTTR~~-~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+.+-+||+||+.... ..+.+...+....+.+.+|++|++. .+..... +..+.+.+++.++..+.+.+. +
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g----- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ-G----- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc-C-----
Confidence 455689999997742 3444544443334456677766643 3333222 168999999999988888765 1
Q ss_pred CCCHHHHHHHHHHHhcCCcHH
Q 004573 80 IPTIEPILKQVVEQCAGLPLA 100 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPLa 100 (744)
-..+.+..|++.++|.|..
T Consensus 169 --i~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 --ISEEAAELLLALAGGSPGA 187 (188)
T ss_pred --CCHHHHHHHHHHcCCCccc
Confidence 1135688999999998853
No 96
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=85.75 E-value=2.4 Score=44.94 Aligned_cols=94 Identities=9% Similarity=0.053 Sum_probs=60.4
Q ss_pred CceEEEEEcCCCCcc--ccccccCCCCCCCCCcEEEEEecchh-HHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKRF--SLDEVGIPEPTVDNGCKLVLTTRLKE-VARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~--~~~~l~~~~~~~~~gsriivTTR~~~-v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+++-++|+||+...+ ....+...+..-..++.+|++|...+ +..... +..+.+.+++.++..+.+.+.....
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~--- 216 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL--- 216 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC---
Confidence 456689999998743 23334333322234566777776653 433322 2789999999999999998764221
Q ss_pred CCCHHHHHHHHHHHhcCCcHHHHHH
Q 004573 80 IPTIEPILKQVVEQCAGLPLAIVTV 104 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPLai~~~ 104 (744)
.. +....+++.++|.|+....+
T Consensus 217 --~~-~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 217 --PD-DPRAALAALAEGSVGRALRL 238 (365)
T ss_pred --CH-HHHHHHHHHcCCCHHHHHHH
Confidence 11 22267899999999876544
No 97
>PRK08727 hypothetical protein; Validated
Probab=84.36 E-value=2.1 Score=42.24 Aligned_cols=92 Identities=10% Similarity=0.042 Sum_probs=57.7
Q ss_pred EEEEEcCCCCcc---ccccccCCCCC--CCCCcEEEEEecc---------hhHHHhcCC-eeEecCCCCHHHHHHHHHHH
Q 004573 8 YVLILDDVWKRF---SLDEVGIPEPT--VDNGCKLVLTTRL---------KEVARSMGC-EVIPVDLLSEDEALRLFSKH 72 (744)
Q Consensus 8 ~LiVLDDv~~~~---~~~~l~~~~~~--~~~gsriivTTR~---------~~v~~~~~~-~~~~l~~L~~~~~~~Lf~~~ 72 (744)
-+|||||+.... .|+.....+-+ ..+|..||+||+. +++..+++. .++++++++.++-.+++.++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 489999997532 23322111211 1346679999984 233344444 68899999999999999987
Q ss_pred hCCCCCCCCCHHHHHHHHHHHhcCCcHHH
Q 004573 73 VGDYLLRIPTIEPILKQVVEQCAGLPLAI 101 (744)
Q Consensus 73 ~~~~~~~~~~~~~~~~~i~~~c~glPLai 101 (744)
+.... ..--++...-|++.++|-.-++
T Consensus 175 a~~~~--l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRG--LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcC--CCCCHHHHHHHHHhCCCCHHHH
Confidence 64321 2223456677888887655444
No 98
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.13 E-value=0.95 Score=26.98 Aligned_cols=22 Identities=27% Similarity=0.387 Sum_probs=15.6
Q ss_pred CcccEEEcccCCCCCCChhHHh
Q 004573 283 RSLSTLLLQHNYIEEIPEFFFE 304 (744)
Q Consensus 283 ~~L~~L~l~~~~l~~l~~~~~~ 304 (744)
++|++|++.+|.+..+|..+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 4677777777777777776653
No 99
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.13 E-value=0.95 Score=26.98 Aligned_cols=22 Identities=27% Similarity=0.387 Sum_probs=15.6
Q ss_pred CcccEEEcccCCCCCCChhHHh
Q 004573 283 RSLSTLLLQHNYIEEIPEFFFE 304 (744)
Q Consensus 283 ~~L~~L~l~~~~l~~l~~~~~~ 304 (744)
++|++|++.+|.+..+|..+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 4677777777777777776653
No 100
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=84.06 E-value=3.6 Score=42.77 Aligned_cols=93 Identities=16% Similarity=0.237 Sum_probs=60.2
Q ss_pred CceEEEEEc-CCCCccccccccCCCCCCCCCcEEEEEecchhHH-HhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCCC
Q 004573 5 RKRYVLILD-DVWKRFSLDEVGIPEPTVDNGCKLVLTTRLKEVA-RSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLRI 80 (744)
Q Consensus 5 ~kr~LiVLD-Dv~~~~~~~~l~~~~~~~~~gsriivTTR~~~v~-~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~ 80 (744)
++|+.||=| |..+...++.+...+.....++.+|++|.+.+.+ .... +..+.++++++++....+.+.+..
T Consensus 93 ~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~----- 167 (313)
T PRK05564 93 DKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYND----- 167 (313)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcC-----
Confidence 445544444 4444556777766665556788999888766433 2221 278999999999998877665421
Q ss_pred CCHHHHHHHHHHHhcCCcHHHHH
Q 004573 81 PTIEPILKQVVEQCAGLPLAIVT 103 (744)
Q Consensus 81 ~~~~~~~~~i~~~c~glPLai~~ 103 (744)
-..+.+..++..++|.|..+..
T Consensus 168 -~~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 168 -IKEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred -CCHHHHHHHHHHcCCCHHHHHH
Confidence 1123467889999999876543
No 101
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=83.21 E-value=2.8 Score=46.43 Aligned_cols=95 Identities=14% Similarity=0.110 Sum_probs=62.4
Q ss_pred CceEEEEEcCCCCc--cccccccCCCCCCCCCcEEE-EEecchhHHHhcCC--eeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKR--FSLDEVGIPEPTVDNGCKLV-LTTRLKEVARSMGC--EVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~--~~~~~l~~~~~~~~~gsrii-vTTR~~~v~~~~~~--~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+++-++|+|+++.- ..++.+...+......+++| +||+.+.+...... ..+++++++.++....+.+.+....
T Consensus 127 ~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~eg-- 204 (507)
T PRK06645 127 GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQEN-- 204 (507)
T ss_pred CCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcC--
Confidence 56678999999884 34666654444334455655 56666566543322 6789999999999999998874322
Q ss_pred CCCHHHHHHHHHHHhcCCcHHH
Q 004573 80 IPTIEPILKQVVEQCAGLPLAI 101 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPLai 101 (744)
..-..+....|++.++|-+--+
T Consensus 205 i~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 205 LKTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred CCCCHHHHHHHHHHcCCCHHHH
Confidence 1122345677899998876443
No 102
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=80.54 E-value=3.8 Score=43.17 Aligned_cols=98 Identities=9% Similarity=0.077 Sum_probs=60.0
Q ss_pred CCceEEEEEcCCCCccc--cccccCCCCCCCCCcE-EEEEecchhHHHhcCC--eeEecCCCCHHHHHHHHHHHhCCCCC
Q 004573 4 ERKRYVLILDDVWKRFS--LDEVGIPEPTVDNGCK-LVLTTRLKEVARSMGC--EVIPVDLLSEDEALRLFSKHVGDYLL 78 (744)
Q Consensus 4 ~~kr~LiVLDDv~~~~~--~~~l~~~~~~~~~gsr-iivTTR~~~v~~~~~~--~~~~l~~L~~~~~~~Lf~~~~~~~~~ 78 (744)
.+++-++|+|++..... .+.+...+.....+.. |++|++-..+...... ..+.+++++.++..+.+.+.... .
T Consensus 139 ~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~- 216 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-Q- 216 (351)
T ss_pred cCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-c-
Confidence 35666899999987432 3333333322123344 4455444444433222 68999999999999999874321 1
Q ss_pred CCCCHHHHHHHHHHHhcCCcHHHHHHH
Q 004573 79 RIPTIEPILKQVVEQCAGLPLAIVTVA 105 (744)
Q Consensus 79 ~~~~~~~~~~~i~~~c~glPLai~~~~ 105 (744)
. -..+....+++.++|.|.....+.
T Consensus 217 -~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 217 -G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred -C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 123456789999999998765443
No 103
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=80.28 E-value=1.1 Score=26.86 Aligned_cols=16 Identities=25% Similarity=0.646 Sum_probs=12.8
Q ss_pred cCccceEEeccCCCCc
Q 004573 677 CNSLETIVVLRCPEIK 692 (744)
Q Consensus 677 ~~sL~~L~i~~C~~L~ 692 (744)
+|+|+.|++++|++++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4678888888888876
No 104
>PRK08084 DNA replication initiation factor; Provisional
Probab=79.14 E-value=4.1 Score=40.32 Aligned_cols=91 Identities=10% Similarity=0.051 Sum_probs=57.5
Q ss_pred EEEEcCCCCc---cccccc----cCCCCCCCCCcEEEEEecch---------hHHHhcCC-eeEecCCCCHHHHHHHHHH
Q 004573 9 VLILDDVWKR---FSLDEV----GIPEPTVDNGCKLVLTTRLK---------EVARSMGC-EVIPVDLLSEDEALRLFSK 71 (744)
Q Consensus 9 LiVLDDv~~~---~~~~~l----~~~~~~~~~gsriivTTR~~---------~v~~~~~~-~~~~l~~L~~~~~~~Lf~~ 71 (744)
+|++|||... .+|+.. .......+ +.+||+||+.. ++..++.. .+++++++++++-.+.+.+
T Consensus 100 lliiDdi~~~~~~~~~~~~lf~l~n~~~e~g-~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~ 178 (235)
T PRK08084 100 LVCIDNIECIAGDELWEMAIFDLYNRILESG-RTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQL 178 (235)
T ss_pred EEEEeChhhhcCCHHHHHHHHHHHHHHHHcC-CCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHH
Confidence 7899999763 345422 11221112 23789998754 34455555 7999999999999999888
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHhcCCcHHHH
Q 004573 72 HVGDYLLRIPTIEPILKQVVEQCAGLPLAIV 102 (744)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 102 (744)
++.... ..--+++..-|++.+.|-.-++.
T Consensus 179 ~a~~~~--~~l~~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 179 RARLRG--FELPEDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred HHHHcC--CCCCHHHHHHHHHhhcCCHHHHH
Confidence 664321 22234667778888877655544
No 105
>PRK05642 DNA replication initiation factor; Validated
Probab=77.91 E-value=5.2 Score=39.53 Aligned_cols=92 Identities=15% Similarity=0.130 Sum_probs=56.3
Q ss_pred EEEEcCCCCc---ccccc-ccCCCCC-CCCCcEEEEEecchh---------HHHhcCC-eeEecCCCCHHHHHHHHHHHh
Q 004573 9 VLILDDVWKR---FSLDE-VGIPEPT-VDNGCKLVLTTRLKE---------VARSMGC-EVIPVDLLSEDEALRLFSKHV 73 (744)
Q Consensus 9 LiVLDDv~~~---~~~~~-l~~~~~~-~~~gsriivTTR~~~---------v~~~~~~-~~~~l~~L~~~~~~~Lf~~~~ 73 (744)
++|+|||... ..|+. +...+.. ...|.+||+||+... +..+++. .++++++++.++-.+...+++
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 6889999742 34543 2222211 134668899887532 2233333 688999999999999998665
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCcHHHH
Q 004573 74 GDYLLRIPTIEPILKQVVEQCAGLPLAIV 102 (744)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~~~c~glPLai~ 102 (744)
.... ..--+++..-+++++.|-.-++.
T Consensus 180 ~~~~--~~l~~ev~~~L~~~~~~d~r~l~ 206 (234)
T PRK05642 180 SRRG--LHLTDEVGHFILTRGTRSMSALF 206 (234)
T ss_pred HHcC--CCCCHHHHHHHHHhcCCCHHHHH
Confidence 3321 11224667777888877665554
No 106
>COG3903 Predicted ATPase [General function prediction only]
Probab=77.55 E-value=0.91 Score=47.41 Aligned_cols=215 Identities=19% Similarity=0.139 Sum_probs=126.6
Q ss_pred CCceEEEEEcCCCCcc-ccccccCCCCCCCCCcEEEEEecchhHHHhcCCeeEecCCCCHH-HHHHHHHHHhCC---CCC
Q 004573 4 ERKRYVLILDDVWKRF-SLDEVGIPEPTVDNGCKLVLTTRLKEVARSMGCEVIPVDLLSED-EALRLFSKHVGD---YLL 78 (744)
Q Consensus 4 ~~kr~LiVLDDv~~~~-~~~~l~~~~~~~~~gsriivTTR~~~v~~~~~~~~~~l~~L~~~-~~~~Lf~~~~~~---~~~ 78 (744)
.++|.++|+||.-+.. +-..+...+..+...-+|+.|+|..-.. -+...+.++.|+.. ++.++|.-.+.. ...
T Consensus 86 ~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~--~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~ 163 (414)
T COG3903 86 GDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV--AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFW 163 (414)
T ss_pred hhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc--cccccccCCccccCCchhHHHHHHHHHhcccee
Confidence 3578889999876531 1111111222333444788888855321 12257788888865 799998866532 111
Q ss_pred CCCCHHHHHHHHHHHhcCCcHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCC-------CCCCCccchhhhhhhhccCCCC
Q 004573 79 RIPTIEPILKQVVEQCAGLPLAIVTVASSMKSEDDVDLWKNALNELKENST-------SVEGMGDEVIPRLKFSYDRLMD 151 (744)
Q Consensus 79 ~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~~w~~~l~~l~~~~~-------~~~~~~~~i~~~l~~sy~~L~~ 151 (744)
-...-...+.+|.++.+|.|+||.-.++..+.-.. ..+.+.+++... ...--.......+.+||--|.
T Consensus 164 l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~----~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLt- 238 (414)
T COG3903 164 LTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSP----DEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLT- 238 (414)
T ss_pred ecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCH----HHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhh-
Confidence 12234567889999999999999988887765321 122222222111 001112345677899999887
Q ss_pred hhhhHHHhhccCCCCCcccChHHHHHHHHHhCccccchhhhHHHHhHHHHHHHHHHcccccccCCC--cEEechHHHHHH
Q 004573 152 PKIKRCFLYCALFPEDFDIPKEELIEYWIVEGLIDVMETRQAMHYKGLAILHKLKENCLLESAEDG--KCVKMHDLVREM 229 (744)
Q Consensus 152 ~~~k~cfl~~s~fp~~~~i~~~~Li~~wiaeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~--~~~~mHdli~~~ 229 (744)
...+--|--++.|...+.-. ...|.+.|-... ...+....-+..+++++++...+.. ..|+.-+-+|.|
T Consensus 239 gwe~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Y 309 (414)
T COG3903 239 GWERALFGRLAVFVGGFDLG----LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRY 309 (414)
T ss_pred hHHHHHhcchhhhhhhhccc----HHHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 67788888888887776433 334555443210 1234555667788888887665332 346666666666
Q ss_pred HHHHh
Q 004573 230 ALDIT 234 (744)
Q Consensus 230 ~~~i~ 234 (744)
+..+-
T Consensus 310 alaeL 314 (414)
T COG3903 310 ALAEL 314 (414)
T ss_pred HHHHH
Confidence 66554
No 107
>PRK06620 hypothetical protein; Validated
Probab=77.10 E-value=6.7 Score=38.10 Aligned_cols=90 Identities=14% Similarity=0.068 Sum_probs=54.3
Q ss_pred EEEEEcCCCCccc--cccccCCCCCCCCCcEEEEEecch-------hHHHhcCC-eeEecCCCCHHHHHHHHHHHhCCCC
Q 004573 8 YVLILDDVWKRFS--LDEVGIPEPTVDNGCKLVLTTRLK-------EVARSMGC-EVIPVDLLSEDEALRLFSKHVGDYL 77 (744)
Q Consensus 8 ~LiVLDDv~~~~~--~~~l~~~~~~~~~gsriivTTR~~-------~v~~~~~~-~~~~l~~L~~~~~~~Lf~~~~~~~~ 77 (744)
-++++|||....+ +-.+...+. ..|..||+|++.. +...++.. .++++++++.++-..+..+.+....
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 4788999974322 111211111 3466899998743 23344444 6899999999998888888764321
Q ss_pred CCCCCHHHHHHHHHHHhcCCcHHH
Q 004573 78 LRIPTIEPILKQVVEQCAGLPLAI 101 (744)
Q Consensus 78 ~~~~~~~~~~~~i~~~c~glPLai 101 (744)
..--+++..-|++++.|---++
T Consensus 165 --l~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 165 --VTISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred --CCCCHHHHHHHHHHccCCHHHH
Confidence 1223456666777776654433
No 108
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=75.79 E-value=4 Score=42.68 Aligned_cols=94 Identities=21% Similarity=0.208 Sum_probs=59.9
Q ss_pred CCCceEEEEEcCCCCc--cccccccCCCCCCCCCcEEEE--EecchhHH--H--hcCCeeEecCCCCHHHHHHHHHHHhC
Q 004573 3 KERKRYVLILDDVWKR--FSLDEVGIPEPTVDNGCKLVL--TTRLKEVA--R--SMGCEVIPVDLLSEDEALRLFSKHVG 74 (744)
Q Consensus 3 l~~kr~LiVLDDv~~~--~~~~~l~~~~~~~~~gsriiv--TTR~~~v~--~--~~~~~~~~l~~L~~~~~~~Lf~~~~~ 74 (744)
..++|.+|++|.|..- .|-+.+.. .-.+|.-|+| ||-++.-. . ...+.++++++|+.+|-.+++.+.+-
T Consensus 101 ~~gr~tiLflDEIHRfnK~QQD~lLp---~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~ 177 (436)
T COG2256 101 LLGRRTILFLDEIHRFNKAQQDALLP---HVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALL 177 (436)
T ss_pred hcCCceEEEEehhhhcChhhhhhhhh---hhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHh
Confidence 3488999999999873 44444432 2356776666 66665421 1 11227999999999999999998542
Q ss_pred CCCCC----CC-CHHHHHHHHHHHhcCCcH
Q 004573 75 DYLLR----IP-TIEPILKQVVEQCAGLPL 99 (744)
Q Consensus 75 ~~~~~----~~-~~~~~~~~i~~~c~glPL 99 (744)
..... .. -.++...-++..++|---
T Consensus 178 ~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 178 DEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred hhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 21111 11 224466778888888653
No 109
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=75.56 E-value=0.12 Score=49.14 Aligned_cols=82 Identities=26% Similarity=0.192 Sum_probs=40.4
Q ss_pred CCcccEEEcccCCCCCCChhHHhcCCCCcEEEcCCCCCCccCCccccCcccccEEeccCcccccCCcCccCCCCccEEEc
Q 004573 282 CRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINLTALMVHGCFRLRHVPSLAKLSALKKLDL 361 (744)
Q Consensus 282 ~~~L~~L~l~~~~l~~l~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~l~~~~~i~~l~~L~~L~l 361 (744)
+...++||++.|.+..+...+ +-+..|..||++.+ .+..+|..++.+..++.+++..+.....+-+.+++++++++++
T Consensus 41 ~kr~tvld~~s~r~vn~~~n~-s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGKNF-SILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred cceeeeehhhhhHHHhhccch-HHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 445555666655444443332 44555555666532 3555565555555555555544322222224555555555555
Q ss_pred cCCC
Q 004573 362 GGTE 365 (744)
Q Consensus 362 ~~~~ 365 (744)
.+|.
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 5443
No 110
>PF14516 AAA_35: AAA-like domain
Probab=75.11 E-value=21 Score=37.44 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=42.0
Q ss_pred eeEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHhhcCC
Q 004573 53 EVIPVDLLSEDEALRLFSKHVGDYLLRIPTIEPILKQVVEQCAGLPLAIVTVASSMKSE 111 (744)
Q Consensus 53 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~ 111 (744)
..+.|++++.+|...|..++-.. --....++|....||+|--+..++..+..+
T Consensus 194 ~~i~L~~Ft~~ev~~L~~~~~~~------~~~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 194 QPIELPDFTPEEVQELAQRYGLE------FSQEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred cceeCCCCCHHHHHHHHHhhhcc------CCHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 47899999999999999876322 111238899999999999999998888664
No 111
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=74.75 E-value=6.4 Score=43.14 Aligned_cols=98 Identities=14% Similarity=0.111 Sum_probs=61.7
Q ss_pred EEEEEcCCCCcc---cc-ccccCCCCC-CCCCcEEEEEecch---------hHHHhcCC-eeEecCCCCHHHHHHHHHHH
Q 004573 8 YVLILDDVWKRF---SL-DEVGIPEPT-VDNGCKLVLTTRLK---------EVARSMGC-EVIPVDLLSEDEALRLFSKH 72 (744)
Q Consensus 8 ~LiVLDDv~~~~---~~-~~l~~~~~~-~~~gsriivTTR~~---------~v~~~~~~-~~~~l~~L~~~~~~~Lf~~~ 72 (744)
-+||+||+.... .+ +.+..-+.. ...|..||+|+... ++..++.. .++.+++++.++-.+++.++
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 389999996532 22 222211110 13455788886532 33344444 68899999999999999988
Q ss_pred hCCCCCCCCCHHHHHHHHHHHhcCCcHHHHHHH
Q 004573 73 VGDYLLRIPTIEPILKQVVEQCAGLPLAIVTVA 105 (744)
Q Consensus 73 ~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 105 (744)
+........--+++..-|++.++|.|-.+..+-
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 743221112335678889999999997775443
No 112
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=74.25 E-value=7.7 Score=44.39 Aligned_cols=103 Identities=11% Similarity=-0.026 Sum_probs=59.7
Q ss_pred CCCceEEEEEcCCCCc--cccccccCCCCCCCCCcEEEE--EecchhHH-HhcC--CeeEecCCCCHHHHHHHHHHHhCC
Q 004573 3 KERKRYVLILDDVWKR--FSLDEVGIPEPTVDNGCKLVL--TTRLKEVA-RSMG--CEVIPVDLLSEDEALRLFSKHVGD 75 (744)
Q Consensus 3 l~~kr~LiVLDDv~~~--~~~~~l~~~~~~~~~gsriiv--TTR~~~v~-~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~ 75 (744)
+++++++++-|+.|.. ..|+.+...+....+...|+| ||++.... .... ...+.+.+++.+|.+.++.+.+..
T Consensus 289 Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~ 368 (615)
T TIGR02903 289 LEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEK 368 (615)
T ss_pred HhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHH
Confidence 4567778887766654 347777655554455555555 67754422 1111 156789999999999999987643
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHh
Q 004573 76 YLLRIPTIEPILKQVVEQCAGLPLAIVTVASS 107 (744)
Q Consensus 76 ~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~ 107 (744)
... .--.++.+.|++++..-+-|+..++..
T Consensus 369 ~~v--~ls~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 369 INV--HLAAGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred cCC--CCCHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 211 111344455555554445555554443
No 113
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.27 E-value=13 Score=39.62 Aligned_cols=95 Identities=17% Similarity=0.168 Sum_probs=60.6
Q ss_pred CceEEEEEcCCCCcc--ccccccCCCCCCCCCcEEEEEecch-hHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKRF--SLDEVGIPEPTVDNGCKLVLTTRLK-EVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~--~~~~l~~~~~~~~~gsriivTTR~~-~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+++-++|+|++.... .++.+...+.......++|++|.+. .+..... +..+++++++.++..+.+.+.+....
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g-- 195 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES-- 195 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC--
Confidence 345689999998754 3555544443334456667666543 3443322 27899999999999888877653321
Q ss_pred CCCHHHHHHHHHHHhcCCcHHH
Q 004573 80 IPTIEPILKQVVEQCAGLPLAI 101 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPLai 101 (744)
..-..+.+..|++.++|-|-.+
T Consensus 196 ~~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 196 IDTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred CCCCHHHHHHHHHHcCCCHHHH
Confidence 1123356678999999988644
No 114
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=72.42 E-value=0.2 Score=47.75 Aligned_cols=80 Identities=19% Similarity=0.204 Sum_probs=34.6
Q ss_pred CCCCcEEEcCCCCCCccCCccccCcccccEEeccCcccccCCc-CccCCCCccEEEccCCCCcccccccccCCCCCEEec
Q 004573 306 LTGLKILDLSGNSNLLRLPDSISGLINLTALMVHGCFRLRHVP-SLAKLSALKKLDLGGTEIDVVPQGLEMLAHLTYLDL 384 (744)
Q Consensus 306 l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~l~~~~-~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l 384 (744)
+....+||++.+. +..+-..++.+..|..|+++.+ .+..+| ..+.+..++++++..|..+..|.+.++++++++++.
T Consensus 41 ~kr~tvld~~s~r-~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 41 FKRVTVLDLSSNR-LVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred cceeeeehhhhhH-HHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 3444444444222 2233333444444444444433 222222 344444444444444444444444444444444444
Q ss_pred cCc
Q 004573 385 NWT 387 (744)
Q Consensus 385 ~~~ 387 (744)
.++
T Consensus 119 k~~ 121 (326)
T KOG0473|consen 119 KKT 121 (326)
T ss_pred ccC
Confidence 443
No 115
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=72.02 E-value=9 Score=40.21 Aligned_cols=94 Identities=10% Similarity=0.071 Sum_probs=57.0
Q ss_pred eEEEEEcCCCCcc--ccccccCCCCCCCCCcEEEEEecch-hHHHhcCC--eeEecCCCCHHHHHHHHHHHhCCCCCCCC
Q 004573 7 RYVLILDDVWKRF--SLDEVGIPEPTVDNGCKLVLTTRLK-EVARSMGC--EVIPVDLLSEDEALRLFSKHVGDYLLRIP 81 (744)
Q Consensus 7 r~LiVLDDv~~~~--~~~~l~~~~~~~~~gsriivTTR~~-~v~~~~~~--~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 81 (744)
+-+||+||+.... ..+.+...+......+++|+||... .+...... ..+++.+++.++....+.+.+..... .
T Consensus 126 ~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~--~ 203 (337)
T PRK12402 126 YKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV--D 203 (337)
T ss_pred CcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC--C
Confidence 4489999997642 1223332222223456788777543 22222222 67889999999998888887643221 1
Q ss_pred CHHHHHHHHHHHhcCCcHHHH
Q 004573 82 TIEPILKQVVEQCAGLPLAIV 102 (744)
Q Consensus 82 ~~~~~~~~i~~~c~glPLai~ 102 (744)
--.+....+++.++|-+-.+.
T Consensus 204 ~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 204 YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred CCHHHHHHHHHHcCCCHHHHH
Confidence 234567788899988765543
No 116
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=70.99 E-value=15 Score=38.88 Aligned_cols=98 Identities=11% Similarity=0.141 Sum_probs=60.5
Q ss_pred CceEEEEEcCCCCc--cccccccCCCCCCCCCcEEEEEecchh-HHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKR--FSLDEVGIPEPTVDNGCKLVLTTRLKE-VARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~--~~~~~l~~~~~~~~~gsriivTTR~~~-v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+++-+||+|++..- ...+.+...+......+.+|++|.+.+ +..... +..++++++++++..+.+...+.....
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~- 194 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI- 194 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-
Confidence 34457889998664 234444434433334567666665443 333222 167889999999988888876633221
Q ss_pred CCCHHHHHHHHHHHhcCCcHHHHHH
Q 004573 80 IPTIEPILKQVVEQCAGLPLAIVTV 104 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPLai~~~ 104 (744)
.--.+.+..+++.++|-|..+...
T Consensus 195 -~i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 195 -KIEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred -CCCHHHHHHHHHHcCCChHHHHHH
Confidence 112467788899999988765443
No 117
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=70.05 E-value=8.6 Score=37.52 Aligned_cols=90 Identities=14% Similarity=0.183 Sum_probs=50.4
Q ss_pred EEEEcCCCCcc---cccc----ccCCCCCCCCCcEEEEEecch---------hHHHhcCC-eeEecCCCCHHHHHHHHHH
Q 004573 9 VLILDDVWKRF---SLDE----VGIPEPTVDNGCKLVLTTRLK---------EVARSMGC-EVIPVDLLSEDEALRLFSK 71 (744)
Q Consensus 9 LiVLDDv~~~~---~~~~----l~~~~~~~~~gsriivTTR~~---------~v~~~~~~-~~~~l~~L~~~~~~~Lf~~ 71 (744)
+|++|||.... .|+. +...+. ..|-+||+|++.. ++..++.. .++++++++.++-.+++.+
T Consensus 100 lL~iDDi~~l~~~~~~q~~lf~l~n~~~--~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 100 LLIIDDIQFLAGKQRTQEELFHLFNRLI--ESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp EEEEETGGGGTTHHHHHHHHHHHHHHHH--HTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred EEEEecchhhcCchHHHHHHHHHHHHHH--hhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 78999997742 2332 122221 3466899999643 23333444 7899999999999999998
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHhcCCcHHHH
Q 004573 72 HVGDYLLRIPTIEPILKQVVEQCAGLPLAIV 102 (744)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 102 (744)
.|..... .--++++.-+++.+.+-.-.+.
T Consensus 178 ~a~~~~~--~l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 178 KAKERGI--ELPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHTT----S-HHHHHHHHHHTTSSHHHHH
T ss_pred HHHHhCC--CCcHHHHHHHHHhhcCCHHHHH
Confidence 8754221 1234556666666665544443
No 118
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=69.49 E-value=21 Score=41.30 Aligned_cols=97 Identities=12% Similarity=0.140 Sum_probs=63.5
Q ss_pred CceEEEEEcCCCCccc--cccccCCCCCCCCCcEEEEEecchh-HHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKRFS--LDEVGIPEPTVDNGCKLVLTTRLKE-VARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~~--~~~l~~~~~~~~~gsriivTTR~~~-v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
++.-++|||+|..... ++.+...+.......++|+||++.+ +....- +..+.++.++.++..+.+.+.+....
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg-- 195 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEER-- 195 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcC--
Confidence 4455788999988543 5555544433345678787777654 322222 27899999999999999988764422
Q ss_pred CCCHHHHHHHHHHHhcCCc-HHHHH
Q 004573 80 IPTIEPILKQVVEQCAGLP-LAIVT 103 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glP-Lai~~ 103 (744)
..-..+....|++.++|-. -|+..
T Consensus 196 I~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 196 IAFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 1223466778999998855 45544
No 119
>PRK04195 replication factor C large subunit; Provisional
Probab=68.53 E-value=56 Score=36.31 Aligned_cols=161 Identities=12% Similarity=0.113 Sum_probs=84.7
Q ss_pred ceEEEEEcCCCCccc------cccccCCCCCCCCCcEEEEEecchh-HHH-hc--CCeeEecCCCCHHHHHHHHHHHhCC
Q 004573 6 KRYVLILDDVWKRFS------LDEVGIPEPTVDNGCKLVLTTRLKE-VAR-SM--GCEVIPVDLLSEDEALRLFSKHVGD 75 (744)
Q Consensus 6 kr~LiVLDDv~~~~~------~~~l~~~~~~~~~gsriivTTR~~~-v~~-~~--~~~~~~l~~L~~~~~~~Lf~~~~~~ 75 (744)
++-+||+|+|+.... ++.+...+. ..+..||+|+.+.. ... .. .+..+.+++++.++....+.+.+..
T Consensus 98 ~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~ 175 (482)
T PRK04195 98 RRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRK 175 (482)
T ss_pred CCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHH
Confidence 577999999987422 333333332 22345666664332 111 11 1267899999999998888877633
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHhhcCC-C--CHHHHHHHHHHHHhcCCCCCCCccchhhhhhhhccCCCCh
Q 004573 76 YLLRIPTIEPILKQVVEQCAGLPLAIVTVASSMKSE-D--DVDLWKNALNELKENSTSVEGMGDEVIPRLKFSYDRLMDP 152 (744)
Q Consensus 76 ~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~-~--~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~ 152 (744)
... .-..+....|++.++|-.-++......+... . +.+.-+.+. . .+....++.++..-+..=...
T Consensus 176 egi--~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~----~-----~d~~~~if~~l~~i~~~k~~~ 244 (482)
T PRK04195 176 EGI--ECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLG----R-----RDREESIFDALDAVFKARNAD 244 (482)
T ss_pred cCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhh----c-----CCCCCCHHHHHHHHHCCCCHH
Confidence 211 1224677889999999776654433333322 1 222221111 0 112245556555444321112
Q ss_pred hhhHHHhhccCCCCCcccChHHHHHHHHHhCcccc
Q 004573 153 KIKRCFLYCALFPEDFDIPKEELIEYWIVEGLIDV 187 (744)
Q Consensus 153 ~~k~cfl~~s~fp~~~~i~~~~Li~~wiaeg~i~~ 187 (744)
.....+..+ .++. +.+-.|+.|.+...
T Consensus 245 ~a~~~~~~~-------~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 245 QALEASYDV-------DEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred HHHHHHHcc-------cCCH-HHHHHHHHhccccc
Confidence 333332222 1222 34678999998765
No 120
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.40 E-value=9.1 Score=43.29 Aligned_cols=97 Identities=10% Similarity=0.088 Sum_probs=61.5
Q ss_pred CCceEEEEEcCCCCcc--ccccccCCCCCCCCCcE-EEEEecchhHHHhcCC--eeEecCCCCHHHHHHHHHHHhCCCCC
Q 004573 4 ERKRYVLILDDVWKRF--SLDEVGIPEPTVDNGCK-LVLTTRLKEVARSMGC--EVIPVDLLSEDEALRLFSKHVGDYLL 78 (744)
Q Consensus 4 ~~kr~LiVLDDv~~~~--~~~~l~~~~~~~~~gsr-iivTTR~~~v~~~~~~--~~~~l~~L~~~~~~~Lf~~~~~~~~~ 78 (744)
.+++-++|+|+|.... .++.+...+-.-..+.+ |++||....+....-. ..+.++.++.++..+.+.+.+....
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg- 200 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG- 200 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC-
Confidence 3456689999998753 34555444432234455 4555555555543322 6899999999999998887764321
Q ss_pred CCCCHHHHHHHHHHHhcCCcHHHH
Q 004573 79 RIPTIEPILKQVVEQCAGLPLAIV 102 (744)
Q Consensus 79 ~~~~~~~~~~~i~~~c~glPLai~ 102 (744)
.....+....|++.++|.|....
T Consensus 201 -i~~d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 201 -IAHEVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred -CCCCHHHHHHHHHHcCCCHHHHH
Confidence 12223456789999999986543
No 121
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.68 E-value=15 Score=40.76 Aligned_cols=95 Identities=14% Similarity=0.074 Sum_probs=61.1
Q ss_pred CceEEEEEcCCCCcc--ccccccCCCCCCCCCcEEEEEec-chhHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKRF--SLDEVGIPEPTVDNGCKLVLTTR-LKEVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~--~~~~l~~~~~~~~~gsriivTTR-~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+++-+||+|+++... .++.+...+........+|++|. ...+..... +..+.+.+++.++..+.+.+.+.....
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi- 193 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGR- 193 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 455688999998643 35555544443334555555554 344433222 268999999999999999987643221
Q ss_pred CCCHHHHHHHHHHHhcCCcHHH
Q 004573 80 IPTIEPILKQVVEQCAGLPLAI 101 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPLai 101 (744)
.-..+....|++.++|.+--+
T Consensus 194 -~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 194 -EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred -CCCHHHHHHHHHHcCCCHHHH
Confidence 123456788999999988544
No 122
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=67.60 E-value=13 Score=39.79 Aligned_cols=93 Identities=8% Similarity=0.078 Sum_probs=58.0
Q ss_pred CceEEEEEcCCCCcc--ccccccCCCCCCCCCcEEEEEecch-hHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKRF--SLDEVGIPEPTVDNGCKLVLTTRLK-EVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~--~~~~l~~~~~~~~~gsriivTTR~~-~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+++-++|+||+.... ....+...+....++..+|++|.+. .+....- +..+.+++++.++..+.+.+..+.
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~---- 191 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV---- 191 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC----
Confidence 344577889998742 2333333332223456666666554 4443322 278999999999998888754321
Q ss_pred CCCHHHHHHHHHHHhcCCcHHHHHH
Q 004573 80 IPTIEPILKQVVEQCAGLPLAIVTV 104 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPLai~~~ 104 (744)
..+.+..++..++|-|.....+
T Consensus 192 ---~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 192 ---DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred ---CHHHHHHHHHHcCCCHHHHHHH
Confidence 1345778999999999765433
No 123
>PLN03025 replication factor C subunit; Provisional
Probab=64.96 E-value=8.1 Score=40.25 Aligned_cols=94 Identities=17% Similarity=0.222 Sum_probs=57.4
Q ss_pred CceEEEEEcCCCCccc--cccccCCCCCCCCCcEEEEEecch-hHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKRFS--LDEVGIPEPTVDNGCKLVLTTRLK-EVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~~--~~~l~~~~~~~~~gsriivTTR~~-~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+++-+|||||+..-.. .+.+...+....+.+++|+||... .+..... +..++++++++++....+.+.+.....
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi- 176 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKV- 176 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCC-
Confidence 4566899999987432 223322222224567777777543 2222111 268899999999999988887643211
Q ss_pred CCCHHHHHHHHHHHhcCCcHH
Q 004573 80 IPTIEPILKQVVEQCAGLPLA 100 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPLa 100 (744)
.-..+....|++.++|-.-.
T Consensus 177 -~i~~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 177 -PYVPEGLEAIIFTADGDMRQ 196 (319)
T ss_pred -CCCHHHHHHHHHHcCCCHHH
Confidence 11245677888999886543
No 124
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=64.70 E-value=11 Score=40.44 Aligned_cols=62 Identities=18% Similarity=0.131 Sum_probs=48.1
Q ss_pred ceEEEEEcCCCCccccccccCCCCCCCCCcEEEEEecchhHHH-----hc-CC-eeEecCCCCHHHHHHH
Q 004573 6 KRYVLILDDVWKRFSLDEVGIPEPTVDNGCKLVLTTRLKEVAR-----SM-GC-EVIPVDLLSEDEALRL 68 (744)
Q Consensus 6 kr~LiVLDDv~~~~~~~~l~~~~~~~~~gsriivTTR~~~v~~-----~~-~~-~~~~l~~L~~~~~~~L 68 (744)
++..|+||.|.....|+.....+.+.++. +|++|+-+..+.. .. |. ..+.+.||+..|-..+
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 67899999999999999877777666666 8999988766542 22 33 6889999999988764
No 125
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=64.24 E-value=16 Score=35.73 Aligned_cols=99 Identities=9% Similarity=0.066 Sum_probs=57.2
Q ss_pred EEEEEcCCCCcccc--ccccCCCCC-CCCCc-EEEEEecchhH--------HHhcCC-eeEecCCCCHHHHHHHHHHHhC
Q 004573 8 YVLILDDVWKRFSL--DEVGIPEPT-VDNGC-KLVLTTRLKEV--------ARSMGC-EVIPVDLLSEDEALRLFSKHVG 74 (744)
Q Consensus 8 ~LiVLDDv~~~~~~--~~l~~~~~~-~~~gs-riivTTR~~~v--------~~~~~~-~~~~l~~L~~~~~~~Lf~~~~~ 74 (744)
-+||+|||.....+ +.+...+.. ...|. .||+|++.... ...+.. ..++++++++++-..++.+.+.
T Consensus 92 ~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~ 171 (227)
T PRK08903 92 ELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAA 171 (227)
T ss_pred CEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHH
Confidence 47899999753221 222222211 12344 46666664332 113332 6889999999877676665442
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHhh
Q 004573 75 DYLLRIPTIEPILKQVVEQCAGLPLAIVTVASSM 108 (744)
Q Consensus 75 ~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 108 (744)
... ..--++....+++.+.|.+..+..+-..+
T Consensus 172 ~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 172 ERG--LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 211 22234577788888999998877665544
No 126
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=63.19 E-value=19 Score=37.59 Aligned_cols=93 Identities=13% Similarity=0.206 Sum_probs=57.7
Q ss_pred CceEEEEEcCCCCcc--ccccccCCCCCCCCCcEEEEEecch-hHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKRF--SLDEVGIPEPTVDNGCKLVLTTRLK-EVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~--~~~~l~~~~~~~~~gsriivTTR~~-~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
++|+. |+|++.... ....+...+-.-..++.+|+||.+. .+....- +..+.+.+++.+++.+.+.+....
T Consensus 106 ~~kv~-iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~---- 180 (328)
T PRK05707 106 GRKVV-LIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE---- 180 (328)
T ss_pred CCeEE-EECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc----
Confidence 44555 679998843 2333333332223466777777665 4443332 268999999999999888765311
Q ss_pred CCCHHHHHHHHHHHhcCCcHHHHHH
Q 004573 80 IPTIEPILKQVVEQCAGLPLAIVTV 104 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPLai~~~ 104 (744)
...+.+..++..++|-|+.+..+
T Consensus 181 --~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 --SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred --CChHHHHHHHHHcCCCHHHHHHH
Confidence 11234567889999999865544
No 127
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.01 E-value=17 Score=40.73 Aligned_cols=98 Identities=14% Similarity=0.134 Sum_probs=59.7
Q ss_pred CceEEEEEcCCCCcc--ccccccCCCCCCCCCcEEE-EEecchhHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKRF--SLDEVGIPEPTVDNGCKLV-LTTRLKEVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~--~~~~l~~~~~~~~~gsrii-vTTR~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+++-++|+||+..-. ..+.+...+......+++| +||....+..... +..+++++++.++-...+.+.+....
T Consensus 118 g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-- 195 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN-- 195 (546)
T ss_pred CCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC--
Confidence 456689999998642 3455544443333455555 5555444543322 27899999999998877777553311
Q ss_pred CCCHHHHHHHHHHHhcCCcH-HHHHH
Q 004573 80 IPTIEPILKQVVEQCAGLPL-AIVTV 104 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPL-ai~~~ 104 (744)
..-..+....|++.++|-+- |+..+
T Consensus 196 i~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 196 INSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22234556778899998664 44333
No 128
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=58.71 E-value=34 Score=38.74 Aligned_cols=86 Identities=13% Similarity=0.097 Sum_probs=53.2
Q ss_pred EEEEcCCCCc---ccccc----ccCCCCCCCCCcEEEEEecch---------hHHHhcCC-eeEecCCCCHHHHHHHHHH
Q 004573 9 VLILDDVWKR---FSLDE----VGIPEPTVDNGCKLVLTTRLK---------EVARSMGC-EVIPVDLLSEDEALRLFSK 71 (744)
Q Consensus 9 LiVLDDv~~~---~~~~~----l~~~~~~~~~gsriivTTR~~---------~v~~~~~~-~~~~l~~L~~~~~~~Lf~~ 71 (744)
+|||||+... ..|+. +...+. ..|..|||||+.. ++...+.. .+++++..+.+.-.+++.+
T Consensus 380 LLlIDDIq~l~gke~tqeeLF~l~N~l~--e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 380 ILLVDDIQFLEDKESTQEEFFHTFNTLH--NANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred EEEEehhccccCCHHHHHHHHHHHHHHH--hcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHH
Confidence 7999999763 22221 222222 3355688888752 23344544 7899999999999999998
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHhcCCc
Q 004573 72 HVGDYLLRIPTIEPILKQVVEQCAGLP 98 (744)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~~~c~glP 98 (744)
++..... .--+++..-|++.+.+..
T Consensus 458 ka~~r~l--~l~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 458 KAVQEQL--NAPPEVLEFIASRISRNI 482 (617)
T ss_pred HHHhcCC--CCCHHHHHHHHHhccCCH
Confidence 8744321 122456666666665543
No 129
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.52 E-value=21 Score=40.51 Aligned_cols=102 Identities=14% Similarity=0.140 Sum_probs=62.9
Q ss_pred CceEEEEEcCCCCc--cccccccCCCCCCCCCcEEEEEecc-hhHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKR--FSLDEVGIPEPTVDNGCKLVLTTRL-KEVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~--~~~~~l~~~~~~~~~gsriivTTR~-~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+++-+||+|++... ...+.+...+........+|++|.. ..+..... +..+++++++.++....+.+.+....
T Consensus 118 g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~eg-- 195 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREG-- 195 (624)
T ss_pred CCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcC--
Confidence 45668999999774 2344444444322234556555544 44443322 26789999999999988887664321
Q ss_pred CCCHHHHHHHHHHHhcCCc-HHHHHHHHhh
Q 004573 80 IPTIEPILKQVVEQCAGLP-LAIVTVASSM 108 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glP-Lai~~~~~~L 108 (744)
..-..+.+..|++.++|-+ -|+..+...+
T Consensus 196 i~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 196 VDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1123456778899999855 6766665443
No 130
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=56.47 E-value=7.4 Score=23.29 Aligned_cols=17 Identities=24% Similarity=0.655 Sum_probs=11.4
Q ss_pred CccEEEccCCCCccccc
Q 004573 355 ALKKLDLGGTEIDVVPQ 371 (744)
Q Consensus 355 ~L~~L~l~~~~l~~lp~ 371 (744)
+|+.|++++|.+..+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56667777777666665
No 131
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=55.64 E-value=20 Score=41.79 Aligned_cols=91 Identities=19% Similarity=0.225 Sum_probs=54.7
Q ss_pred CceEEEEEcCCCCc--cccccccCCCCCCCCCcEEEEE--ecchh--HHHhcC--CeeEecCCCCHHHHHHHHHHHhCCC
Q 004573 5 RKRYVLILDDVWKR--FSLDEVGIPEPTVDNGCKLVLT--TRLKE--VARSMG--CEVIPVDLLSEDEALRLFSKHVGDY 76 (744)
Q Consensus 5 ~kr~LiVLDDv~~~--~~~~~l~~~~~~~~~gsriivT--TR~~~--v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~ 76 (744)
+++.+||||||+.- .+.+.+.... ..|+.++|+ |.+.. +....- ..++.+++++.++...++.+.+...
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~ 184 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDK 184 (725)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHH
Confidence 45679999999763 3445554333 346666653 44331 222111 2678999999999999998875310
Q ss_pred -----CCCCCCHHHHHHHHHHHhcCCc
Q 004573 77 -----LLRIPTIEPILKQVVEQCAGLP 98 (744)
Q Consensus 77 -----~~~~~~~~~~~~~i~~~c~glP 98 (744)
.....-.++....|++.+.|--
T Consensus 185 ~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 185 ERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred HhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 1111223456677888887754
No 132
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.10 E-value=23 Score=39.05 Aligned_cols=100 Identities=19% Similarity=0.187 Sum_probs=59.8
Q ss_pred CceEEEEEcCCCCc--cccccccCCCCCCCCCcEEEE-EecchhHHHhcCC--eeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKR--FSLDEVGIPEPTVDNGCKLVL-TTRLKEVARSMGC--EVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~--~~~~~l~~~~~~~~~gsriiv-TTR~~~v~~~~~~--~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+++-+||+|++..- ...+.+...+........+|+ ||....+...... ..+.+++++.++....+.+.+....
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~eg-- 193 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEG-- 193 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcC--
Confidence 45668999999763 234444444432233444444 4433444443322 6889999999998888888764321
Q ss_pred CCCHHHHHHHHHHHhcC-CcHHHHHHHH
Q 004573 80 IPTIEPILKQVVEQCAG-LPLAIVTVAS 106 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~g-lPLai~~~~~ 106 (744)
..-..+....|+++++| ++.|+..+-.
T Consensus 194 i~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 194 IEIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 12224566778888865 5666666554
No 133
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.96 E-value=26 Score=37.77 Aligned_cols=95 Identities=11% Similarity=0.079 Sum_probs=59.8
Q ss_pred CceEEEEEcCCCCcc--ccccccCCCCCCCCCcEEEEEe-cchhHHHhcCC--eeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKRF--SLDEVGIPEPTVDNGCKLVLTT-RLKEVARSMGC--EVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~--~~~~l~~~~~~~~~gsriivTT-R~~~v~~~~~~--~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+++-++|+|++.... .++.+...+....+.+.+|++| +...+...... ..++++++++++..+.+.+.+....
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g-- 203 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG-- 203 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC--
Confidence 345578999998743 4555544444334466665554 54555543322 5789999999998888877653211
Q ss_pred CCCHHHHHHHHHHHhcCCcHHH
Q 004573 80 IPTIEPILKQVVEQCAGLPLAI 101 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPLai 101 (744)
..-..+.+..+++.++|-+--+
T Consensus 204 ~~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 204 ISVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred CCCCHHHHHHHHHHcCCCHHHH
Confidence 1223466788999999977533
No 134
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=53.36 E-value=30 Score=35.90 Aligned_cols=94 Identities=9% Similarity=0.109 Sum_probs=56.3
Q ss_pred ceEEEEEcCCCCcc--ccccccCCCCCCCCCcEEEEEecc-hhHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCCC
Q 004573 6 KRYVLILDDVWKRF--SLDEVGIPEPTVDNGCKLVLTTRL-KEVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLRI 80 (744)
Q Consensus 6 kr~LiVLDDv~~~~--~~~~l~~~~~~~~~gsriivTTR~-~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~ 80 (744)
.+-+||+|++.... ..+.+...+......+++|+|+.. ..+..... ...++++++++++....+.+.+.....
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~-- 179 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGI-- 179 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCC--
Confidence 35589999987642 233333333222344677777643 22222111 157899999999998888877643221
Q ss_pred CCHHHHHHHHHHHhcCCcHHH
Q 004573 81 PTIEPILKQVVEQCAGLPLAI 101 (744)
Q Consensus 81 ~~~~~~~~~i~~~c~glPLai 101 (744)
.-..+....+++.++|-+--+
T Consensus 180 ~i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 180 EITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred CCCHHHHHHHHHHcCCCHHHH
Confidence 123456778899999987554
No 135
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=52.70 E-value=28 Score=39.69 Aligned_cols=95 Identities=15% Similarity=0.140 Sum_probs=60.2
Q ss_pred CceEEEEEcCCCCcc--ccccccCCCCCCCCCcEEEEEecchh-HHHhc--CCeeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKRF--SLDEVGIPEPTVDNGCKLVLTTRLKE-VARSM--GCEVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~--~~~~l~~~~~~~~~gsriivTTR~~~-v~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+|+-++|+|+|..-. ..+.+...+.....+.++|+||.+.. +.... .+..+++++++.++..+.+.+.+....
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg-- 194 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ-- 194 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC--
Confidence 556689999998743 34444433332234567777776543 32211 127899999999999998888764321
Q ss_pred CCCHHHHHHHHHHHhcCCcHHH
Q 004573 80 IPTIEPILKQVVEQCAGLPLAI 101 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPLai 101 (744)
..-..+....|++.++|-+-.+
T Consensus 195 I~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 195 IAADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred CCCCHHHHHHHHHHcCCCHHHH
Confidence 2233456678999999977444
No 136
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=52.68 E-value=27 Score=38.27 Aligned_cols=94 Identities=12% Similarity=-0.016 Sum_probs=59.7
Q ss_pred CceEEEEEcCCCCc--cccccccCCCCCCCCCcEEE-EEecchhHHHhcCC--eeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKR--FSLDEVGIPEPTVDNGCKLV-LTTRLKEVARSMGC--EVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~--~~~~~l~~~~~~~~~gsrii-vTTR~~~v~~~~~~--~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+++-++|+|+|..- ..++.+...+........+| .||....+....-. ..|.+++++.++-.+.+.+.+....
T Consensus 120 g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg-- 197 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN-- 197 (484)
T ss_pred CCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcC--
Confidence 45668999999874 34565554443222344544 55554555433322 6799999999998888887754321
Q ss_pred CCCHHHHHHHHHHHhcCCcHH
Q 004573 80 IPTIEPILKQVVEQCAGLPLA 100 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPLa 100 (744)
..-..+....|++.++|-+--
T Consensus 198 i~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 198 VQYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred CCCCHHHHHHHHHHcCChHHH
Confidence 122345678899999998843
No 137
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=52.09 E-value=12 Score=22.42 Aligned_cols=14 Identities=36% Similarity=0.617 Sum_probs=6.8
Q ss_pred CCccEEEccCCCCc
Q 004573 354 SALKKLDLGGTEID 367 (744)
Q Consensus 354 ~~L~~L~l~~~~l~ 367 (744)
.+|+.|+++.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555443
No 138
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.98 E-value=34 Score=40.41 Aligned_cols=97 Identities=14% Similarity=0.155 Sum_probs=62.2
Q ss_pred CCceEEEEEcCCCCc--cccccccCCCCCCCCCcEEEEEecc-hhHHHhc--CCeeEecCCCCHHHHHHHHHHHhCCCCC
Q 004573 4 ERKRYVLILDDVWKR--FSLDEVGIPEPTVDNGCKLVLTTRL-KEVARSM--GCEVIPVDLLSEDEALRLFSKHVGDYLL 78 (744)
Q Consensus 4 ~~kr~LiVLDDv~~~--~~~~~l~~~~~~~~~gsriivTTR~-~~v~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~ 78 (744)
.+++-++|||++... ...+.+...+-......++|++|.+ ..+.... .+..|.+++|+.++..+.+.+.+....
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg- 195 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ- 195 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC-
Confidence 356779999999874 3345544333322345566655544 4444332 237899999999999998887663321
Q ss_pred CCCCHHHHHHHHHHHhcCCcHHHH
Q 004573 79 RIPTIEPILKQVVEQCAGLPLAIV 102 (744)
Q Consensus 79 ~~~~~~~~~~~i~~~c~glPLai~ 102 (744)
..-..+....|++.++|.|--+.
T Consensus 196 -I~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 196 -LPFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred -CCCCHHHHHHHHHHcCCCHHHHH
Confidence 22234567889999999885443
No 139
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.85 E-value=45 Score=35.49 Aligned_cols=94 Identities=10% Similarity=0.104 Sum_probs=54.9
Q ss_pred CceEEEEEcCCCCcc--ccccccCCCCCCCCCcEEEEEe-cchhHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKRF--SLDEVGIPEPTVDNGCKLVLTT-RLKEVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~--~~~~l~~~~~~~~~gsriivTT-R~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+++-+||+|++.... .++.+...+......+.+|++| +...+..... +..++.+++++++....+.+.+.....
T Consensus 107 ~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~- 185 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI- 185 (367)
T ss_pred CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCC-
Confidence 344579999987642 2444433332223345555555 4333332221 257899999999988888876643221
Q ss_pred CCCHHHHHHHHHHHhcCCcHH
Q 004573 80 IPTIEPILKQVVEQCAGLPLA 100 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPLa 100 (744)
.-..+....+++.++|-+-.
T Consensus 186 -~i~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 186 -KFEDDALHIIAQKADGALRD 205 (367)
T ss_pred -CCCHHHHHHHHHhCCCCHHH
Confidence 11245677788888886543
No 140
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.84 E-value=30 Score=39.55 Aligned_cols=94 Identities=12% Similarity=0.123 Sum_probs=59.0
Q ss_pred ceEEEEEcCCCCcc--ccccccCCCCCCCCCcEEEE-EecchhHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCCC
Q 004573 6 KRYVLILDDVWKRF--SLDEVGIPEPTVDNGCKLVL-TTRLKEVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLRI 80 (744)
Q Consensus 6 kr~LiVLDDv~~~~--~~~~l~~~~~~~~~gsriiv-TTR~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~ 80 (744)
++=++|+|++..-. .++.+...+..-..++.+|+ ||+...+..... +.+++++++++++....+.+.+.... .
T Consensus 121 ~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~eg--i 198 (614)
T PRK14971 121 KYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEG--I 198 (614)
T ss_pred CcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcC--C
Confidence 34477999988753 34445444433234566554 555555554433 26899999999999988887764321 1
Q ss_pred CCHHHHHHHHHHHhcCCcHHH
Q 004573 81 PTIEPILKQVVEQCAGLPLAI 101 (744)
Q Consensus 81 ~~~~~~~~~i~~~c~glPLai 101 (744)
.-..+.+..|++.++|-.--+
T Consensus 199 ~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 199 TAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CCCHHHHHHHHHHcCCCHHHH
Confidence 222356778999999866433
No 141
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=48.39 E-value=42 Score=34.84 Aligned_cols=92 Identities=15% Similarity=0.103 Sum_probs=57.3
Q ss_pred CceEEEEEcCCCCccc--cccccCCCCCCCCCcEEEEEecc-hhHHHhcCC--eeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKRFS--LDEVGIPEPTVDNGCKLVLTTRL-KEVARSMGC--EVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~~--~~~l~~~~~~~~~gsriivTTR~-~~v~~~~~~--~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+++=++|+|++..... -..+...+-.-..++.+|++|.. ..+....-. ..+.+.+++.+++.+.+... +.
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~~---- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ-GV---- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc-CC----
Confidence 4556888999987532 22232222222346667776664 445544332 78899999999998887653 11
Q ss_pred CCCHHHHHHHHHHHhcCCcHHHHHH
Q 004573 80 IPTIEPILKQVVEQCAGLPLAIVTV 104 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPLai~~~ 104 (744)
....+..++..++|.|+.+..+
T Consensus 187 ---~~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 187 ---SERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred ---ChHHHHHHHHHcCCCHHHHHHH
Confidence 1233667899999999876543
No 142
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=46.54 E-value=9.7 Score=37.14 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=27.3
Q ss_pred EEEEcCCCCccc---cccccCCCCCCCCCcEEEEEecchhHHHhcCC
Q 004573 9 VLILDDVWKRFS---LDEVGIPEPTVDNGCKLVLTTRLKEVARSMGC 52 (744)
Q Consensus 9 LiVLDDv~~~~~---~~~l~~~~~~~~~gsriivTTR~~~v~~~~~~ 52 (744)
++|||||...-+ ...+...+....+++.+||||..+.++..+..
T Consensus 161 ~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~ 207 (220)
T PF02463_consen 161 FLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADK 207 (220)
T ss_dssp EEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 789999987422 33333333333556899999999998877654
No 143
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=46.34 E-value=11 Score=21.73 Aligned_cols=13 Identities=38% Similarity=0.644 Sum_probs=5.5
Q ss_pred CCccEEEccCCCC
Q 004573 354 SALKKLDLGGTEI 366 (744)
Q Consensus 354 ~~L~~L~l~~~~l 366 (744)
++|++|++++|.+
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 3455555555544
No 144
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.78 E-value=53 Score=37.44 Aligned_cols=95 Identities=14% Similarity=0.159 Sum_probs=58.9
Q ss_pred CceEEEEEcCCCCcc--ccccccCCCCCCCCCcEEEEEe-cchhHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKRF--SLDEVGIPEPTVDNGCKLVLTT-RLKEVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~--~~~~l~~~~~~~~~gsriivTT-R~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
++.-++|||+|.... .++.+...+.......++|++| ....+....- +..+++++++.++..+.+.+.+....
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~eg-- 200 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAEN-- 200 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcC--
Confidence 445588999998743 3444544443323455665554 4444443322 27899999999999888887764321
Q ss_pred CCCHHHHHHHHHHHhcCCcHHH
Q 004573 80 IPTIEPILKQVVEQCAGLPLAI 101 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPLai 101 (744)
..-..+....|++.++|-+--+
T Consensus 201 i~ie~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 201 VPAEPQALRLLARAARGSMRDA 222 (618)
T ss_pred CCCCHHHHHHHHHHcCCCHHHH
Confidence 1223456678888998877443
No 145
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=45.69 E-value=20 Score=36.27 Aligned_cols=88 Identities=13% Similarity=0.165 Sum_probs=59.3
Q ss_pred EEEEcCCCCc--cccccccCCCCCCCCCcEEEEEecchhHH-Hhc--CCeeEecCCCCHHHHHHHHHHHhCCCCCCCCCH
Q 004573 9 VLILDDVWKR--FSLDEVGIPEPTVDNGCKLVLTTRLKEVA-RSM--GCEVIPVDLLSEDEALRLFSKHVGDYLLRIPTI 83 (744)
Q Consensus 9 LiVLDDv~~~--~~~~~l~~~~~~~~~gsriivTTR~~~v~-~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~ 83 (744)
.||||++... +.|..+..-.......+|.|.+|..-... .-. .+..|..++|.+++...-+...+...+ ..-.
T Consensus 132 iiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~--v~~d 209 (346)
T KOG0989|consen 132 IIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEG--VDID 209 (346)
T ss_pred EEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhC--CCCC
Confidence 6789999885 45887766665556777877766544322 111 115788999999999998888874422 2223
Q ss_pred HHHHHHHHHHhcCCc
Q 004573 84 EPILKQVVEQCAGLP 98 (744)
Q Consensus 84 ~~~~~~i~~~c~glP 98 (744)
.+..+.|++.++|--
T Consensus 210 ~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 210 DDALKLIAKISDGDL 224 (346)
T ss_pred HHHHHHHHHHcCCcH
Confidence 456778999998843
No 146
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=45.37 E-value=25 Score=37.41 Aligned_cols=64 Identities=17% Similarity=0.202 Sum_probs=41.3
Q ss_pred CCcEEEEEecchhHHH----hcCC--eeEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCcH
Q 004573 33 NGCKLVLTTRLKEVAR----SMGC--EVIPVDLLSEDEALRLFSKHVGDYLLRIPTIEPILKQVVEQCAGLPL 99 (744)
Q Consensus 33 ~gsriivTTR~~~v~~----~~~~--~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 99 (744)
.+.+||.||...+... ..+. ..+.++..+.++..++|+.++....... + .....+++.+.|..-
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~-~--~~~~~la~~t~g~sg 329 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE-D--VDLEAIAKMTEGASG 329 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc-c--CCHHHHHHHcCCCCH
Confidence 4678888988543221 1122 5789999999999999998875432111 1 113567778877653
No 147
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=44.90 E-value=31 Score=39.55 Aligned_cols=95 Identities=15% Similarity=0.096 Sum_probs=57.4
Q ss_pred CceEEEEEcCCCCccc--cccccCCCCCCCCCcEEEEEecch-hHHHhc-CC-eeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKRFS--LDEVGIPEPTVDNGCKLVLTTRLK-EVARSM-GC-EVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~~--~~~l~~~~~~~~~gsriivTTR~~-~v~~~~-~~-~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+++-++|+|+|..... .+.+...+.......++|++|.+. .+.... +. ..+.+++++.++....+.+.+....
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEg-- 195 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEK-- 195 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcC--
Confidence 4556899999977432 333333332222345666666544 333221 11 5788899999999888887764321
Q ss_pred CCCHHHHHHHHHHHhcCCcHHH
Q 004573 80 IPTIEPILKQVVEQCAGLPLAI 101 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPLai 101 (744)
..-..+....|++.++|-+.-+
T Consensus 196 i~id~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 196 IAYEPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred CCcCHHHHHHHHHHhCCCHHHH
Confidence 1223456788999999887544
No 148
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.05 E-value=45 Score=36.84 Aligned_cols=95 Identities=18% Similarity=0.193 Sum_probs=59.1
Q ss_pred CceEEEEEcCCCCcc--ccccccCCCCCCCCCcEEEEEe-cchhHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKRF--SLDEVGIPEPTVDNGCKLVLTT-RLKEVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~--~~~~l~~~~~~~~~gsriivTT-R~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+++=++|+|+|..-. ..+.+...+....+.+++|++| ..+.+..... +..+++++++.++..+.+.+.+....
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Eg-- 192 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKEN-- 192 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcC--
Confidence 445579999997643 2444443333323456665555 4455554332 27889999999999998888764422
Q ss_pred CCCHHHHHHHHHHHhcCCcHHH
Q 004573 80 IPTIEPILKQVVEQCAGLPLAI 101 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPLai 101 (744)
..-..+....|++.++|-+-.+
T Consensus 193 i~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 193 IEHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred CCCCHHHHHHHHHHcCCCHHHH
Confidence 1223355677889998876543
No 149
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=43.72 E-value=38 Score=36.66 Aligned_cols=91 Identities=14% Similarity=0.168 Sum_probs=54.1
Q ss_pred EEEEcCCCCccc---cc-cccCCCCC-CCCCcEEEEEecch-h--------HHHhcCC-eeEecCCCCHHHHHHHHHHHh
Q 004573 9 VLILDDVWKRFS---LD-EVGIPEPT-VDNGCKLVLTTRLK-E--------VARSMGC-EVIPVDLLSEDEALRLFSKHV 73 (744)
Q Consensus 9 LiVLDDv~~~~~---~~-~l~~~~~~-~~~gsriivTTR~~-~--------v~~~~~~-~~~~l~~L~~~~~~~Lf~~~~ 73 (744)
+||||||..... ++ .+...+.. ...|..||+||... . +..++.. .++.+++.+.++-.+++.+.+
T Consensus 202 lLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~ 281 (405)
T TIGR00362 202 LLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKA 281 (405)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 799999975321 11 12111110 02345678877642 1 2233333 578999999999999999887
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCcHHH
Q 004573 74 GDYLLRIPTIEPILKQVVEQCAGLPLAI 101 (744)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~~~c~glPLai 101 (744)
.... ..--+++..-|++.+.|-.-.+
T Consensus 282 ~~~~--~~l~~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 282 EEEG--LELPDEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHcC--CCCCHHHHHHHHHhcCCCHHHH
Confidence 5422 1223567777888888766543
No 150
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=43.51 E-value=57 Score=37.82 Aligned_cols=96 Identities=16% Similarity=0.128 Sum_probs=58.3
Q ss_pred CceEEEEEcCCCCc--cccccccCCCCCCCCCcE-EEEEecchhHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKR--FSLDEVGIPEPTVDNGCK-LVLTTRLKEVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~--~~~~~l~~~~~~~~~gsr-iivTTR~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+++-++|+|+|..- ..+..+...+-....... |++||+...+..... +..+++.+++.++....+...+....
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~keg-- 194 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKEN-- 194 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcC--
Confidence 45568899999764 234444433322223444 555665555554322 26899999999998888877653321
Q ss_pred CCCHHHHHHHHHHHhcCCcH-HHH
Q 004573 80 IPTIEPILKQVVEQCAGLPL-AIV 102 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPL-ai~ 102 (744)
..-..+.+..|++.++|-+- |+.
T Consensus 195 I~id~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 195 ISYEKNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 11223457789999988664 443
No 151
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=43.25 E-value=56 Score=36.55 Aligned_cols=96 Identities=8% Similarity=0.080 Sum_probs=59.3
Q ss_pred CceEEEEEcCCCCcc--ccccccCCCCCCCCCcEEEEEecch-hHHHhc--CCeeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKRF--SLDEVGIPEPTVDNGCKLVLTTRLK-EVARSM--GCEVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~--~~~~l~~~~~~~~~gsriivTTR~~-~v~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+++-++|+|++.... ..+.+...+-...+.+++|++|.+. .+.... .+..+++++++.++..+.+.+.+....
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EG-- 193 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEG-- 193 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcC--
Confidence 445688999997743 2344433333223456777666653 222211 126889999999999888877653321
Q ss_pred CCCHHHHHHHHHHHhcCCcHHHH
Q 004573 80 IPTIEPILKQVVEQCAGLPLAIV 102 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPLai~ 102 (744)
..-..+.+..|++.++|-+--+.
T Consensus 194 i~i~~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 194 VSYEPEALEILARSGNGSLRDTL 216 (535)
T ss_pred CCCCHHHHHHHHHHcCCcHHHHH
Confidence 12234567789999999885443
No 152
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.09 E-value=50 Score=37.77 Aligned_cols=92 Identities=14% Similarity=0.132 Sum_probs=56.0
Q ss_pred ceEEEEEcCCCCcc--ccccccCCCCCCCCCcEEE-EEecchhHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCCC
Q 004573 6 KRYVLILDDVWKRF--SLDEVGIPEPTVDNGCKLV-LTTRLKEVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLRI 80 (744)
Q Consensus 6 kr~LiVLDDv~~~~--~~~~l~~~~~~~~~gsrii-vTTR~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~ 80 (744)
++=++|+||+..-. ..+.+...+..-...+.+| +||+...+..... +..+++++++.++....+.+.+.... .
T Consensus 127 ~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~eg--i 204 (620)
T PRK14954 127 RYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEG--I 204 (620)
T ss_pred CCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcC--C
Confidence 34468999997753 2444444443223345544 5555555554332 27899999999998887777653211 1
Q ss_pred CCHHHHHHHHHHHhcCCcH
Q 004573 81 PTIEPILKQVVEQCAGLPL 99 (744)
Q Consensus 81 ~~~~~~~~~i~~~c~glPL 99 (744)
.-..+.+..+++.++|-.-
T Consensus 205 ~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 205 QIDADALQLIARKAQGSMR 223 (620)
T ss_pred CCCHHHHHHHHHHhCCCHH
Confidence 1234567789999999554
No 153
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=42.69 E-value=57 Score=35.80 Aligned_cols=97 Identities=13% Similarity=0.160 Sum_probs=57.6
Q ss_pred CceEEEEEcCCCCcc--ccccccCCCCCCCCCcEEEEEe-cchhHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKRF--SLDEVGIPEPTVDNGCKLVLTT-RLKEVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~--~~~~l~~~~~~~~~gsriivTT-R~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+++-+||+|++.... ..+.+...+.....+..+|++| +...+..... +..++++++++++....+.+.+....
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg-- 197 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG-- 197 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC--
Confidence 455678999987642 2333433333223355666555 4444433222 26889999999998888877653321
Q ss_pred CCCHHHHHHHHHHHhcCCcH-HHHH
Q 004573 80 IPTIEPILKQVVEQCAGLPL-AIVT 103 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPL-ai~~ 103 (744)
..-..+.+..|++.++|-+- |+..
T Consensus 198 ~~i~~~al~~L~~~s~gdlr~a~~~ 222 (451)
T PRK06305 198 IETSREALLPIARAAQGSLRDAESL 222 (451)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 12234567789999998664 4433
No 154
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=42.46 E-value=60 Score=38.53 Aligned_cols=95 Identities=13% Similarity=0.143 Sum_probs=58.2
Q ss_pred CceEEEEEcCCCCcc--ccccccCCCCCCCCCcEEEE-EecchhHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKRF--SLDEVGIPEPTVDNGCKLVL-TTRLKEVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~--~~~~l~~~~~~~~~gsriiv-TTR~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+++=++|||++.... ..+.|...+..-...+.+|+ ||....+...+. +..|++..++.++-.+.+.+.+....
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG-- 196 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG-- 196 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC--
Confidence 444568899998753 34444444433334555554 444445554433 27899999999998888877653221
Q ss_pred CCCHHHHHHHHHHHhcCCcHHH
Q 004573 80 IPTIEPILKQVVEQCAGLPLAI 101 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPLai 101 (744)
..-..+....|++.++|-+..+
T Consensus 197 v~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 197 VPVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred CCCCHHHHHHHHHHcCCCHHHH
Confidence 1123345677899999987433
No 155
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=42.44 E-value=2.8e+02 Score=33.18 Aligned_cols=99 Identities=14% Similarity=0.166 Sum_probs=51.3
Q ss_pred eEEEEEcCCCCcc---c--cccccCCCCCCCCCcEEEE--Eecc--------hhHHHhcCCeeEecCCCCHHHHHHHHHH
Q 004573 7 RYVLILDDVWKRF---S--LDEVGIPEPTVDNGCKLVL--TTRL--------KEVARSMGCEVIPVDLLSEDEALRLFSK 71 (744)
Q Consensus 7 r~LiVLDDv~~~~---~--~~~l~~~~~~~~~gsriiv--TTR~--------~~v~~~~~~~~~~l~~L~~~~~~~Lf~~ 71 (744)
..+||||+|+.-. + +..+... + ...+++|+| +|.+ +.|..+++...+..++++.++-.+++.+
T Consensus 870 v~IIILDEID~L~kK~QDVLYnLFR~-~-~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~ 947 (1164)
T PTZ00112 870 VSILIIDEIDYLITKTQKVLFTLFDW-P-TKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKE 947 (1164)
T ss_pred ceEEEeehHhhhCccHHHHHHHHHHH-h-hccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHH
Confidence 3589999998632 1 2112111 1 124566655 3322 2233344444567799999999999998
Q ss_pred HhCCC--CCCCCCHHHHHHHHHHHhcCCcHHHHHHHHh
Q 004573 72 HVGDY--LLRIPTIEPILKQVVEQCAGLPLAIVTVASS 107 (744)
Q Consensus 72 ~~~~~--~~~~~~~~~~~~~i~~~c~glPLai~~~~~~ 107 (744)
++... ......++-+|+.++..-|-.=.||.++-.+
T Consensus 948 RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrA 985 (1164)
T PTZ00112 948 RLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKA 985 (1164)
T ss_pred HHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHH
Confidence 87531 1111223333443333334444555544433
No 156
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.26 E-value=64 Score=36.82 Aligned_cols=97 Identities=12% Similarity=0.091 Sum_probs=60.1
Q ss_pred CceEEEEEcCCCCc--cccccccCCCCCCCCCcEEEEEec-chhHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKR--FSLDEVGIPEPTVDNGCKLVLTTR-LKEVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~--~~~~~l~~~~~~~~~gsriivTTR-~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+++-+||+|++..- ...+.+...+......+.+|++|. ...+..... +..+.++.++.++....+.+.+.....
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl- 197 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI- 197 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC-
Confidence 45668999999764 234444433332234556666554 344443222 257889999999988888877643221
Q ss_pred CCCHHHHHHHHHHHhcCCcHHHHH
Q 004573 80 IPTIEPILKQVVEQCAGLPLAIVT 103 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPLai~~ 103 (744)
.-..+....|++.++|-+..+..
T Consensus 198 -~i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 198 -NLEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred -CCCHHHHHHHHHHcCCCHHHHHH
Confidence 12245678899999998865543
No 157
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=41.19 E-value=41 Score=38.04 Aligned_cols=98 Identities=10% Similarity=0.155 Sum_probs=57.9
Q ss_pred CceEEEEEcCCCCc--cccccccCCCCCCCCCcEEE-EEecchhHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKR--FSLDEVGIPEPTVDNGCKLV-LTTRLKEVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~--~~~~~l~~~~~~~~~gsrii-vTTR~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
++| ++|+|++..- ..+..+...+........+| +||....+..... +..+++.++++++....+.+.+.....
T Consensus 119 ~~K-VIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi- 196 (605)
T PRK05896 119 KYK-VYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI- 196 (605)
T ss_pred CcE-EEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC-
Confidence 344 5999999774 33444443332222344555 4555445543322 268899999999999888876643211
Q ss_pred CCCHHHHHHHHHHHhcCCcH-HHHHHH
Q 004573 80 IPTIEPILKQVVEQCAGLPL-AIVTVA 105 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPL-ai~~~~ 105 (744)
.-..+.+..+++.++|-+- |+..+-
T Consensus 197 -~Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 197 -KIEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred -CCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 1123557788999998654 444333
No 158
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=40.76 E-value=78 Score=33.93 Aligned_cols=115 Identities=21% Similarity=0.242 Sum_probs=63.5
Q ss_pred EEEEcCCCCc---ccccc----ccCCCCCCCCCcEEEEEecc---------hhHHHhcCC-eeEecCCCCHHHHHHHHHH
Q 004573 9 VLILDDVWKR---FSLDE----VGIPEPTVDNGCKLVLTTRL---------KEVARSMGC-EVIPVDLLSEDEALRLFSK 71 (744)
Q Consensus 9 LiVLDDv~~~---~~~~~----l~~~~~~~~~gsriivTTR~---------~~v~~~~~~-~~~~l~~L~~~~~~~Lf~~ 71 (744)
++++||++-- +.|+. +...+.. .|-.||+|++. +++..++.. -++++.+.+.+.....+.+
T Consensus 178 lllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~k 255 (408)
T COG0593 178 LLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRK 255 (408)
T ss_pred eeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHH
Confidence 8899999763 22221 2233332 33389999854 344455555 7899999999999999998
Q ss_pred HhCCCCCCCC--CHHHHHHHHHHHhcCCcHHHHHHHHhh-c-C-CCCHHHHHHHHHHHH
Q 004573 72 HVGDYLLRIP--TIEPILKQVVEQCAGLPLAIVTVASSM-K-S-EDDVDLWKNALNELK 125 (744)
Q Consensus 72 ~~~~~~~~~~--~~~~~~~~i~~~c~glPLai~~~~~~L-~-~-~~~~~~w~~~l~~l~ 125 (744)
++.......+ -..-++..+-+-..-+.-|+..+..+- . . .-+.+.-++++..+.
T Consensus 256 ka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~ 314 (408)
T COG0593 256 KAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLL 314 (408)
T ss_pred HHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhh
Confidence 7644322122 233344444444444555554333321 1 1 124444455555443
No 159
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=40.26 E-value=90 Score=32.48 Aligned_cols=90 Identities=11% Similarity=0.090 Sum_probs=56.3
Q ss_pred CceEEEEEcCCCCccc--cccccCCCCCCCCCcEEEEEecch-hHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKRFS--LDEVGIPEPTVDNGCKLVLTTRLK-EVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~~--~~~l~~~~~~~~~gsriivTTR~~-~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+++=.+|+|++..... ...+...+-.-..++.+|+||.+. .+....- +..+.+.++++++..+.+.......
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~~--- 182 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSAE--- 182 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhccC---
Confidence 4555677999987532 333333332223456677666654 4554433 2789999999999998887654221
Q ss_pred CCCHHHHHHHHHHHhcCCcHHH
Q 004573 80 IPTIEPILKQVVEQCAGLPLAI 101 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPLai 101 (744)
...+...+..++|-|+.+
T Consensus 183 ----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 183 ----ISEILTALRINYGRPLLA 200 (325)
T ss_pred ----hHHHHHHHHHcCCCHHHH
Confidence 113556788999999644
No 160
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=38.59 E-value=76 Score=32.91 Aligned_cols=94 Identities=13% Similarity=0.207 Sum_probs=56.8
Q ss_pred CceEEEEEcCCCCccc--cccccCCCCCCCCCcEEEEEecchhHHHhcCC--eeEecCCCCHHHHHHHHHHHhCCCCCCC
Q 004573 5 RKRYVLILDDVWKRFS--LDEVGIPEPTVDNGCKLVLTTRLKEVARSMGC--EVIPVDLLSEDEALRLFSKHVGDYLLRI 80 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~~--~~~l~~~~~~~~~gsriivTTR~~~v~~~~~~--~~~~l~~L~~~~~~~Lf~~~~~~~~~~~ 80 (744)
+++=++|+|++..... ...+...+-.-.++.-|++|++-..+...... ..+.++++++++..+.+.+.....
T Consensus 123 ~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~---- 198 (314)
T PRK07399 123 APRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE---- 198 (314)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc----
Confidence 4566788999876432 33333333211233344444444455544333 789999999999999998764321
Q ss_pred CCHHHHHHHHHHHhcCCcHHHHH
Q 004573 81 PTIEPILKQVVEQCAGLPLAIVT 103 (744)
Q Consensus 81 ~~~~~~~~~i~~~c~glPLai~~ 103 (744)
........++..++|-|..+..
T Consensus 199 -~~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 199 -ILNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred -cchhHHHHHHHHcCCCHHHHHH
Confidence 1111135789999999976654
No 161
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=38.55 E-value=51 Score=37.78 Aligned_cols=97 Identities=13% Similarity=0.136 Sum_probs=59.7
Q ss_pred CCceEEEEEcCCCCcc--ccccccCCCCCCCCCcEEEEEec-chhHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCC
Q 004573 4 ERKRYVLILDDVWKRF--SLDEVGIPEPTVDNGCKLVLTTR-LKEVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLL 78 (744)
Q Consensus 4 ~~kr~LiVLDDv~~~~--~~~~l~~~~~~~~~gsriivTTR-~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~ 78 (744)
.+++-++|+|+|..-. ..+.+...+-......++|.+|. ...+....- +..|.+++++.++....+.+.+....
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~- 195 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ- 195 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC-
Confidence 3566689999998743 34444333322233445555444 444443222 37899999999999988887653211
Q ss_pred CCCCHHHHHHHHHHHhcCCcHHHH
Q 004573 79 RIPTIEPILKQVVEQCAGLPLAIV 102 (744)
Q Consensus 79 ~~~~~~~~~~~i~~~c~glPLai~ 102 (744)
.....+....|++.++|.+--+.
T Consensus 196 -i~~e~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 196 -IPFEPRALQLLARAADGSMRDAL 218 (647)
T ss_pred -CCCCHHHHHHHHHHcCCCHHHHH
Confidence 12234556789999999886443
No 162
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=36.89 E-value=87 Score=28.83 Aligned_cols=96 Identities=13% Similarity=0.113 Sum_probs=47.8
Q ss_pred CCceEEEEEcCC------CCccccccccCCCCCCCCCcEEEEEec-chh----HHHhcCC--eeEecCCCCHHHHHHHHH
Q 004573 4 ERKRYVLILDDV------WKRFSLDEVGIPEPTVDNGCKLVLTTR-LKE----VARSMGC--EVIPVDLLSEDEALRLFS 70 (744)
Q Consensus 4 ~~kr~LiVLDDv------~~~~~~~~l~~~~~~~~~gsriivTTR-~~~----v~~~~~~--~~~~l~~L~~~~~~~Lf~ 70 (744)
.+||++ |+.+. +....++.+...+.....++.+|+.+. ..+ ....... .++...+++..+......
T Consensus 56 ~~~klv-ii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~ 134 (172)
T PF06144_consen 56 GDKKLV-IIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIK 134 (172)
T ss_dssp SSEEEE-EEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHH
T ss_pred CCCeEE-EEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHH
Confidence 444544 44444 334567777666655567777888777 222 2223332 566777777777777776
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHhcCCcHHHH
Q 004573 71 KHVGDYLLRIPTIEPILKQVVEQCAGLPLAIV 102 (744)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 102 (744)
+.+.... ..-..+.++.++++.+|-+.++.
T Consensus 135 ~~~~~~g--~~i~~~a~~~L~~~~~~d~~~l~ 164 (172)
T PF06144_consen 135 ERAKKNG--LKIDPDAAQYLIERVGNDLSLLQ 164 (172)
T ss_dssp HHHHHTT---EE-HHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHcC--CCCCHHHHHHHHHHhChHHHHHH
Confidence 6653211 11234566677777777766653
No 163
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.34 E-value=1.1e+02 Score=33.95 Aligned_cols=96 Identities=13% Similarity=0.118 Sum_probs=56.7
Q ss_pred CceEEEEEcCCCCcc--ccccccCCCCCCCCCcEEEE-EecchhHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKRF--SLDEVGIPEPTVDNGCKLVL-TTRLKEVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~--~~~~l~~~~~~~~~gsriiv-TTR~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+++-++|+|++.... ..+.+...+........+|+ ||+...+..... +..+.+.+++.++-...+.+.+....
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~eg-- 195 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEK-- 195 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcC--
Confidence 456689999997642 23444333322223444444 455444443222 26789999999998888887653321
Q ss_pred CCCHHHHHHHHHHHhcCCcHHHH
Q 004573 80 IPTIEPILKQVVEQCAGLPLAIV 102 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPLai~ 102 (744)
..-..+....|++.++|.+-.+.
T Consensus 196 i~id~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 196 IEYEEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHH
Confidence 12233556778888988765443
No 164
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=35.34 E-value=91 Score=35.56 Aligned_cols=95 Identities=14% Similarity=0.153 Sum_probs=59.1
Q ss_pred ceEEEEEcCCCCcc--ccccccCCCCCCCCCcEEEE-EecchhHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCCC
Q 004573 6 KRYVLILDDVWKRF--SLDEVGIPEPTVDNGCKLVL-TTRLKEVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLRI 80 (744)
Q Consensus 6 kr~LiVLDDv~~~~--~~~~l~~~~~~~~~gsriiv-TTR~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~ 80 (744)
++=++|+|++.... ..+.+...+..-..++++|+ ||....+..... +..+.++.+++++....+.+.+.... .
T Consensus 132 ~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~keg--i 209 (598)
T PRK09111 132 RYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEG--V 209 (598)
T ss_pred CcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcC--C
Confidence 34468999997653 24444433332234556554 555555544332 26899999999999998888764321 1
Q ss_pred CCHHHHHHHHHHHhcCCcHHHH
Q 004573 81 PTIEPILKQVVEQCAGLPLAIV 102 (744)
Q Consensus 81 ~~~~~~~~~i~~~c~glPLai~ 102 (744)
.-..+....|++.++|-+.-+.
T Consensus 210 ~i~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 210 EVEDEALALIARAAEGSVRDGL 231 (598)
T ss_pred CCCHHHHHHHHHHcCCCHHHHH
Confidence 1223567788999999886554
No 165
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=33.98 E-value=2.1e+02 Score=29.65 Aligned_cols=89 Identities=12% Similarity=0.135 Sum_probs=55.9
Q ss_pred ceEEEEEcCCCCcc--ccccccCCCCCCCCCcEEEEEecc-hhHHHhcCC--eeEecCCCCHHHHHHHHHHHhCCCCCCC
Q 004573 6 KRYVLILDDVWKRF--SLDEVGIPEPTVDNGCKLVLTTRL-KEVARSMGC--EVIPVDLLSEDEALRLFSKHVGDYLLRI 80 (744)
Q Consensus 6 kr~LiVLDDv~~~~--~~~~l~~~~~~~~~gsriivTTR~-~~v~~~~~~--~~~~l~~L~~~~~~~Lf~~~~~~~~~~~ 80 (744)
++=.+|+|++.... ....+...+-.-.+++.+|.+|.+ ..+....-. ..+.+++++++++.+.+... +.
T Consensus 108 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~-~~----- 181 (319)
T PRK06090 108 GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQ-GI----- 181 (319)
T ss_pred CceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHc-CC-----
Confidence 34467889988743 233333333222345666666555 455554433 78899999999998888653 11
Q ss_pred CCHHHHHHHHHHHhcCCcHHHHHH
Q 004573 81 PTIEPILKQVVEQCAGLPLAIVTV 104 (744)
Q Consensus 81 ~~~~~~~~~i~~~c~glPLai~~~ 104 (744)
. ....++..++|.|+.+..+
T Consensus 182 ~----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 T----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred c----hHHHHHHHcCCCHHHHHHH
Confidence 1 2356789999999976544
No 166
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=33.42 E-value=65 Score=35.43 Aligned_cols=114 Identities=15% Similarity=0.164 Sum_probs=64.9
Q ss_pred EEEEcCCCCcc---cc-ccccCCCCC-CCCCcEEEEEecch---------hHHHhcCC-eeEecCCCCHHHHHHHHHHHh
Q 004573 9 VLILDDVWKRF---SL-DEVGIPEPT-VDNGCKLVLTTRLK---------EVARSMGC-EVIPVDLLSEDEALRLFSKHV 73 (744)
Q Consensus 9 LiVLDDv~~~~---~~-~~l~~~~~~-~~~gsriivTTR~~---------~v~~~~~~-~~~~l~~L~~~~~~~Lf~~~~ 73 (744)
+||||||.... .+ +.+...+.. ...|..||+||... ++..++.. .++++++.+.++-.+++.+.+
T Consensus 214 lLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~ 293 (450)
T PRK00149 214 VLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKA 293 (450)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHH
Confidence 89999996521 11 122111110 12345688887643 12334444 689999999999999999987
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCcHHHH----HHHH---hhcCCCCHHHHHHHHHHH
Q 004573 74 GDYLLRIPTIEPILKQVVEQCAGLPLAIV----TVAS---SMKSEDDVDLWKNALNEL 124 (744)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~~~c~glPLai~----~~~~---~L~~~~~~~~w~~~l~~l 124 (744)
.... ..--+++..-|++.++|-.-.+. .+.. .....-+.+..++++..+
T Consensus 294 ~~~~--~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 294 EEEG--IDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHcC--CCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 5321 12234667788888887665432 2221 111223556666666654
No 167
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=32.39 E-value=1.1e+02 Score=32.05 Aligned_cols=90 Identities=13% Similarity=0.208 Sum_probs=54.8
Q ss_pred CceEEEEEcCCCCcc--ccccccCCCCCCCCCcEEEEEecc-hhHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKRF--SLDEVGIPEPTVDNGCKLVLTTRL-KEVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~--~~~~l~~~~~~~~~gsriivTTR~-~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+++=.+|+||+.... ....+...+-.-.+++.+|.+|.+ ..+....- +..+.+++++.++..+.+... +.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~---- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GV---- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CC----
Confidence 344467789988753 244443333322456666655554 55554432 278899999999999888764 11
Q ss_pred CCCHHHHHHHHHHHhcCCcHHHHHH
Q 004573 80 IPTIEPILKQVVEQCAGLPLAIVTV 104 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPLai~~~ 104 (744)
+. ...++..++|-|..+..+
T Consensus 206 -~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 -AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -Ch----HHHHHHHcCCCHHHHHHH
Confidence 11 223578889999865543
No 168
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=32.27 E-value=93 Score=32.57 Aligned_cols=91 Identities=18% Similarity=0.116 Sum_probs=56.8
Q ss_pred CceEEEEEcCCCCccc--cccccCCCCCCCCCcEEEEEecch-hHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKRFS--LDEVGIPEPTVDNGCKLVLTTRLK-EVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~~--~~~l~~~~~~~~~gsriivTTR~~-~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+++=.+|+|++..... -..+...+-.-..++.+|.+|.+. .+....- +..+.+.+++++++.+.+.+..+.
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~~---- 182 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREVTM---- 182 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHccCC----
Confidence 4555788999987532 233333332223466677666654 4554432 267899999999998877653221
Q ss_pred CCCHHHHHHHHHHHhcCCcHHHH
Q 004573 80 IPTIEPILKQVVEQCAGLPLAIV 102 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPLai~ 102 (744)
..+.+..++..++|.|..+.
T Consensus 183 ---~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 183 ---SQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ---CHHHHHHHHHHcCCCHHHHH
Confidence 12336678999999997543
No 169
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.87 E-value=1.4e+02 Score=33.49 Aligned_cols=93 Identities=14% Similarity=0.124 Sum_probs=56.1
Q ss_pred CceEEEEEcCCCCccc--cccccCCCCCCCCCcEEEEEecc-hhHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKRFS--LDEVGIPEPTVDNGCKLVLTTRL-KEVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~~--~~~l~~~~~~~~~gsriivTTR~-~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+++-++|+|++..-.. .+.+...+......+.+|.+|.+ ..+..... +..+++++++.++-.+.+.+.+....
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg-- 195 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN-- 195 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC--
Confidence 5666899999987532 34443333322345555555543 33332221 26889999999998888877653221
Q ss_pred CCCHHHHHHHHHHHhcCCcH
Q 004573 80 IPTIEPILKQVVEQCAGLPL 99 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPL 99 (744)
..-..+....|++.++|.+-
T Consensus 196 i~~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 196 IPFDATALQLLARAAAGSMR 215 (527)
T ss_pred CCCCHHHHHHHHHHcCCCHH
Confidence 12233456778899999775
No 170
>PRK04132 replication factor C small subunit; Provisional
Probab=31.84 E-value=1.7e+02 Score=34.89 Aligned_cols=95 Identities=8% Similarity=0.140 Sum_probs=60.9
Q ss_pred ceEEEEEcCCCCcc--ccccccCCCCCCCCCcEEEEEecch-hHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCCC
Q 004573 6 KRYVLILDDVWKRF--SLDEVGIPEPTVDNGCKLVLTTRLK-EVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLRI 80 (744)
Q Consensus 6 kr~LiVLDDv~~~~--~~~~l~~~~~~~~~gsriivTTR~~-~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~ 80 (744)
+.-++|+|++..-. ....+...+-.....+++|.+|.+. .+..... +..+.+++++.++-...+.+.+.... .
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg--i 707 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG--L 707 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC--C
Confidence 45799999999853 3444443333223456666666554 3333322 27899999999998888877654321 1
Q ss_pred CCHHHHHHHHHHHhcCCcHHHH
Q 004573 81 PTIEPILKQVVEQCAGLPLAIV 102 (744)
Q Consensus 81 ~~~~~~~~~i~~~c~glPLai~ 102 (744)
.-..+....|++.++|-+-.+.
T Consensus 708 ~i~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 708 ELTEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred CCCHHHHHHHHHHcCCCHHHHH
Confidence 1124577889999999885543
No 171
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.05 E-value=1.4e+02 Score=34.39 Aligned_cols=97 Identities=13% Similarity=0.100 Sum_probs=58.0
Q ss_pred CceEEEEEcCCCCcc--ccccccCCCCCCCCCcEEEE-EecchhHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKRF--SLDEVGIPEPTVDNGCKLVL-TTRLKEVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~--~~~~l~~~~~~~~~gsriiv-TTR~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+++-++|+|++.... .++.+...+........+|+ |+....+..... +..+.+..++.++....+.+.+....
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~keg-- 197 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKES-- 197 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhC--
Confidence 345578999998743 34555444432223445554 444444443332 26788889999988887777664321
Q ss_pred CCCHHHHHHHHHHHhcCCcHHHHH
Q 004573 80 IPTIEPILKQVVEQCAGLPLAIVT 103 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPLai~~ 103 (744)
..-..+....|++.++|-+..+..
T Consensus 198 i~is~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 198 IEIEPEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 111235677899999998765543
No 172
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=29.08 E-value=3.4e+02 Score=29.79 Aligned_cols=86 Identities=14% Similarity=0.172 Sum_probs=49.3
Q ss_pred EEEEcCCCCccc--c--ccccCCCCC-CCCCcEEEEEecch---------hHHHhcCC-eeEecCCCCHHHHHHHHHHHh
Q 004573 9 VLILDDVWKRFS--L--DEVGIPEPT-VDNGCKLVLTTRLK---------EVARSMGC-EVIPVDLLSEDEALRLFSKHV 73 (744)
Q Consensus 9 LiVLDDv~~~~~--~--~~l~~~~~~-~~~gsriivTTR~~---------~v~~~~~~-~~~~l~~L~~~~~~~Lf~~~~ 73 (744)
+|++||+..... + +.+...+.. ...|-.||+||... .+..++.. .++.+++++.++-.+++.+++
T Consensus 205 vLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~ 284 (445)
T PRK12422 205 ALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKA 284 (445)
T ss_pred EEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHH
Confidence 789999976322 1 112111110 02345788887542 22334443 688999999999999998887
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcC
Q 004573 74 GDYLLRIPTIEPILKQVVEQCAG 96 (744)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~~~c~g 96 (744)
.... ..--.++..-|++.+.|
T Consensus 285 ~~~~--~~l~~evl~~la~~~~~ 305 (445)
T PRK12422 285 EALS--IRIEETALDFLIEALSS 305 (445)
T ss_pred HHcC--CCCCHHHHHHHHHhcCC
Confidence 4321 11123455556666654
No 173
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=29.00 E-value=2e+02 Score=31.74 Aligned_cols=85 Identities=19% Similarity=0.261 Sum_probs=55.1
Q ss_pred ceEEEEEcCCCCcccccccc---------------CCCCCCCCCcEEEEEecchhHHHhcCC-----eeEecCCCCH-HH
Q 004573 6 KRYVLILDDVWKRFSLDEVG---------------IPEPTVDNGCKLVLTTRLKEVARSMGC-----EVIPVDLLSE-DE 64 (744)
Q Consensus 6 kr~LiVLDDv~~~~~~~~l~---------------~~~~~~~~gsriivTTR~~~v~~~~~~-----~~~~l~~L~~-~~ 64 (744)
.=-.||+||+..--+|-.++ ...|..|+.=-|+-||....|.+.|+. .+|.++.++. ++
T Consensus 598 ~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~ 677 (744)
T KOG0741|consen 598 PLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQ 677 (744)
T ss_pred cceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHH
Confidence 33579999998765554332 223333444457778888999998875 5889999987 77
Q ss_pred HHHHHHHHh-CCCCCCCCCHHHHHHHHHHHh
Q 004573 65 ALRLFSKHV-GDYLLRIPTIEPILKQVVEQC 94 (744)
Q Consensus 65 ~~~Lf~~~~-~~~~~~~~~~~~~~~~i~~~c 94 (744)
..+.++..- |. ......++++...+|
T Consensus 678 ~~~vl~~~n~fs----d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 678 LLEVLEELNIFS----DDEVRAIAEQLLSKK 704 (744)
T ss_pred HHHHHHHccCCC----cchhHHHHHHHhccc
Confidence 777777642 33 233445566666666
No 174
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=28.92 E-value=1e+02 Score=33.66 Aligned_cols=88 Identities=18% Similarity=0.096 Sum_probs=52.2
Q ss_pred EEEEEcCCCCc---ccc-ccc---cCCCCCCCCCcEEEEEec-chhH--------HHhcCC-eeEecCCCCHHHHHHHHH
Q 004573 8 YVLILDDVWKR---FSL-DEV---GIPEPTVDNGCKLVLTTR-LKEV--------ARSMGC-EVIPVDLLSEDEALRLFS 70 (744)
Q Consensus 8 ~LiVLDDv~~~---~~~-~~l---~~~~~~~~~gsriivTTR-~~~v--------~~~~~~-~~~~l~~L~~~~~~~Lf~ 70 (744)
-+||+||+... ..+ +.+ ...+. ..|..||+||. ...- ..++.. .++.+++.+.+.-.+++.
T Consensus 196 dvLlIDDi~~l~~~~~~q~elf~~~n~l~--~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~ 273 (440)
T PRK14088 196 DVLLIDDVQFLIGKTGVQTELFHTFNELH--DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIAR 273 (440)
T ss_pred CEEEEechhhhcCcHHHHHHHHHHHHHHH--HcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHH
Confidence 37999999753 111 112 11121 23447888874 3221 222333 588999999999999999
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHhcCCcH
Q 004573 71 KHVGDYLLRIPTIEPILKQVVEQCAGLPL 99 (744)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~i~~~c~glPL 99 (744)
+.+..... .--+++..-|++.+.|---
T Consensus 274 ~~~~~~~~--~l~~ev~~~Ia~~~~~~~R 300 (440)
T PRK14088 274 KMLEIEHG--ELPEEVLNFVAENVDDNLR 300 (440)
T ss_pred HHHHhcCC--CCCHHHHHHHHhccccCHH
Confidence 88743221 1224567778888776543
No 175
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.04 E-value=1.4e+02 Score=33.93 Aligned_cols=99 Identities=12% Similarity=0.141 Sum_probs=59.1
Q ss_pred CceEEEEEcCCCCc--cccccccCCCCCCCCCcEEE-EEecchhHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKR--FSLDEVGIPEPTVDNGCKLV-LTTRLKEVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~--~~~~~l~~~~~~~~~gsrii-vTTR~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+++=++|+|++..- ...+.+...+........+| +||....+..... +..|.++.++.++..+.+.+.+....
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~eg-- 194 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEG-- 194 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcC--
Confidence 34457899999764 23444443443323355555 5555555554322 37899999999998888877653321
Q ss_pred CCCHHHHHHHHHHHhcCCcH-HHHHHH
Q 004573 80 IPTIEPILKQVVEQCAGLPL-AIVTVA 105 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPL-ai~~~~ 105 (744)
..-..+....|++..+|-+- |+..+-
T Consensus 195 i~i~~~al~~Ia~~s~GdlR~aln~Ld 221 (584)
T PRK14952 195 VVVDDAVYPLVIRAGGGSPRDTLSVLD 221 (584)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11223456778888998774 444433
No 176
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=27.02 E-value=50 Score=19.99 Aligned_cols=12 Identities=33% Similarity=0.750 Sum_probs=7.0
Q ss_pred CccEEEccCCCC
Q 004573 355 ALKKLDLGGTEI 366 (744)
Q Consensus 355 ~L~~L~l~~~~l 366 (744)
+|++|+|++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 456666666554
No 177
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=26.60 E-value=1.9e+02 Score=32.85 Aligned_cols=95 Identities=15% Similarity=0.168 Sum_probs=58.1
Q ss_pred CceEEEEEcCCCCcc--ccccccCCCCCCCCCcEEEEEe-cchhHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKRF--SLDEVGIPEPTVDNGCKLVLTT-RLKEVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~--~~~~l~~~~~~~~~gsriivTT-R~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+++=++|+|++..-. .++.+...+........+|.+| ....+..... +..++.++++.++-.+.+.+.+....
T Consensus 118 ~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~eg-- 195 (563)
T PRK06647 118 SRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQ-- 195 (563)
T ss_pred CCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcC--
Confidence 445578899997753 3455544443323455555554 4444443322 26789999999998888877663321
Q ss_pred CCCHHHHHHHHHHHhcCCcHHH
Q 004573 80 IPTIEPILKQVVEQCAGLPLAI 101 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPLai 101 (744)
..-..+....|++.++|-+-.+
T Consensus 196 i~id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 196 IKYEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred CCCCHHHHHHHHHHcCCCHHHH
Confidence 1223456777889999977544
No 178
>CHL00181 cbbX CbbX; Provisional
Probab=26.24 E-value=1.6e+02 Score=30.04 Aligned_cols=66 Identities=8% Similarity=0.090 Sum_probs=41.5
Q ss_pred EEEEEcCCCCc-----------cccccccCCCCCCCCCcEEEEEecchhHH----------HhcCCeeEecCCCCHHHHH
Q 004573 8 YVLILDDVWKR-----------FSLDEVGIPEPTVDNGCKLVLTTRLKEVA----------RSMGCEVIPVDLLSEDEAL 66 (744)
Q Consensus 8 ~LiVLDDv~~~-----------~~~~~l~~~~~~~~~gsriivTTR~~~v~----------~~~~~~~~~l~~L~~~~~~ 66 (744)
-.|++|++... +..+.+...+.+...+.+||++|....+. .++ ...+.+++++.+|-.
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~-~~~i~F~~~t~~el~ 202 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRI-ANHVDFPDYTPEELL 202 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhC-CceEEcCCcCHHHHH
Confidence 47899999642 12233333333334556777887644332 221 157899999999999
Q ss_pred HHHHHHhC
Q 004573 67 RLFSKHVG 74 (744)
Q Consensus 67 ~Lf~~~~~ 74 (744)
+++.+.+.
T Consensus 203 ~I~~~~l~ 210 (287)
T CHL00181 203 QIAKIMLE 210 (287)
T ss_pred HHHHHHHH
Confidence 99888764
No 179
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.27 E-value=1e+02 Score=34.43 Aligned_cols=95 Identities=12% Similarity=0.078 Sum_probs=54.9
Q ss_pred CceEEEEEcCCCCc--cccccccCCCCCCCCCcEEEEEecc-hhHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKR--FSLDEVGIPEPTVDNGCKLVLTTRL-KEVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~--~~~~~l~~~~~~~~~gsriivTTR~-~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
++.-++|+|+|..- ...+.+...+......+++|.+|.+ ..+....- +..+++++++.++-...+.+.+....
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~eg-- 195 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEEN-- 195 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcC--
Confidence 45568899999874 2344443333322345666655543 33332221 15788999999887776666543211
Q ss_pred CCCHHHHHHHHHHHhcCCcHHH
Q 004573 80 IPTIEPILKQVVEQCAGLPLAI 101 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPLai 101 (744)
..-..+....|++.++|-+--+
T Consensus 196 i~~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 196 VEFENAALDLLARAANGSVRDA 217 (509)
T ss_pred CCCCHHHHHHHHHHcCCcHHHH
Confidence 1112345567888888877544
No 180
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=23.13 E-value=46 Score=29.14 Aligned_cols=41 Identities=17% Similarity=0.021 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCc-----cccccccCCCCC---CCCCcEEEEEecchh
Q 004573 5 RKRYVLILDDVWKR-----FSLDEVGIPEPT---VDNGCKLVLTTRLKE 45 (744)
Q Consensus 5 ~kr~LiVLDDv~~~-----~~~~~l~~~~~~---~~~gsriivTTR~~~ 45 (744)
.++.+||+||++.. ..+..+...... ...+.+||+||....
T Consensus 83 ~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 83 AKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred CCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 46789999999963 112222222211 136788999988653
No 181
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.96 E-value=94 Score=35.38 Aligned_cols=98 Identities=13% Similarity=0.124 Sum_probs=56.0
Q ss_pred CceEEEEEcCCCCcc--ccccccCCCCCCCCCcEEE-EEecchhHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKRF--SLDEVGIPEPTVDNGCKLV-LTTRLKEVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~--~~~~l~~~~~~~~~gsrii-vTTR~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+++=++|+|+|..-. ..+.+...+........+| +||....+..... +..+++++++.++....+...+....
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~eg-- 195 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEG-- 195 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhC--
Confidence 344568899997643 2333433332222344555 5555555554332 26788999999988877776653321
Q ss_pred CCCHHHHHHHHHHHhcCCc-HHHHHH
Q 004573 80 IPTIEPILKQVVEQCAGLP-LAIVTV 104 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glP-Lai~~~ 104 (744)
..-..+....|++.++|-. .|+..+
T Consensus 196 i~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 196 ISISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1122355677888888855 444433
No 182
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=22.20 E-value=50 Score=30.27 Aligned_cols=39 Identities=26% Similarity=0.215 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCcc-----ccccccCCCCCCCCCcEEEEEecchh
Q 004573 7 RYVLILDDVWKRF-----SLDEVGIPEPTVDNGCKLVLTTRLKE 45 (744)
Q Consensus 7 r~LiVLDDv~~~~-----~~~~l~~~~~~~~~gsriivTTR~~~ 45 (744)
-=|||||++-..- ..+.+...+..--.+.-||+|.|+..
T Consensus 96 ~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 96 YDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred CCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 3499999996531 22333333322234568999999854
No 183
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=21.56 E-value=2.3e+02 Score=32.09 Aligned_cols=95 Identities=13% Similarity=0.112 Sum_probs=56.1
Q ss_pred CceEEEEEcCCCCcc--ccccccCCCCCCCCCcEEE-EEecchhHHHhcC--CeeEecCCCCHHHHHHHHHHHhCCCCCC
Q 004573 5 RKRYVLILDDVWKRF--SLDEVGIPEPTVDNGCKLV-LTTRLKEVARSMG--CEVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 5 ~kr~LiVLDDv~~~~--~~~~l~~~~~~~~~gsrii-vTTR~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 79 (744)
+++-++|+|+|..-. .+..+...+........+| +||....+..... +..++..+++.++....+.+.+....
T Consensus 118 ~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~eg-- 195 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEG-- 195 (559)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcC--
Confidence 455678999998642 3444443332222344444 4555444443322 26788999999998888887664321
Q ss_pred CCCHHHHHHHHHHHhcCCcHHH
Q 004573 80 IPTIEPILKQVVEQCAGLPLAI 101 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPLai 101 (744)
..-..+....|++.++|-+..+
T Consensus 196 i~i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 196 IEYEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred CCCCHHHHHHHHHHcCCCHHHH
Confidence 1122456778888888876543
No 184
>PRK14700 recombination factor protein RarA; Provisional
Probab=21.54 E-value=2e+02 Score=29.36 Aligned_cols=67 Identities=12% Similarity=0.098 Sum_probs=43.3
Q ss_pred CCCcEEEE--EecchhHH--Hhc--CCeeEecCCCCHHHHHHHHHHHhCCC----CCCCCCHHHHHHHHHHHhcCCc
Q 004573 32 DNGCKLVL--TTRLKEVA--RSM--GCEVIPVDLLSEDEALRLFSKHVGDY----LLRIPTIEPILKQVVEQCAGLP 98 (744)
Q Consensus 32 ~~gsriiv--TTR~~~v~--~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~----~~~~~~~~~~~~~i~~~c~glP 98 (744)
.+|.-++| ||.++.-. ... .+.++++++|+.++-.+++.+..... .....-.++....|++.|+|--
T Consensus 5 E~G~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDa 81 (300)
T PRK14700 5 ESGKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDC 81 (300)
T ss_pred cCCcEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHH
Confidence 45655554 67766422 111 12799999999999999999876321 1112234567788999999853
No 185
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=21.24 E-value=57 Score=35.90 Aligned_cols=37 Identities=27% Similarity=0.277 Sum_probs=20.0
Q ss_pred CCCcccEEEcccCCCCCCCh--hHHhcCCCCcEEEcCCC
Q 004573 281 GCRSLSTLLLQHNYIEEIPE--FFFEHLTGLKILDLSGN 317 (744)
Q Consensus 281 ~~~~L~~L~l~~~~l~~l~~--~~~~~l~~L~~L~l~~~ 317 (744)
..+.+..+.+++|.+..+.. .+....++|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 33445555555554333221 22355677888888866
No 186
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=20.04 E-value=2.2e+02 Score=29.40 Aligned_cols=48 Identities=27% Similarity=0.267 Sum_probs=34.1
Q ss_pred eEecCCCCHHHHHHHHHHHhCCCCCCC-CCHHHHHHHHHHHhcCCcHHH
Q 004573 54 VIPVDLLSEDEALRLFSKHVGDYLLRI-PTIEPILKQVVEQCAGLPLAI 101 (744)
Q Consensus 54 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~-~~~~~~~~~i~~~c~glPLai 101 (744)
++++++++.+|+..++...+..+.... ...+...+++.-..+|.|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999998864432222 334455666777778888643
Done!