Query 004573
Match_columns 744
No_of_seqs 320 out of 4214
Neff 9.8
Searched_HMMs 29240
Date Tue Mar 26 17:42:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004573.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1877-1881//hhsearch_pdb/004573hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 272.1 12.8 216 3-238 239-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 249.7 16.0 208 5-237 235-452 (1249)
3 1vt4_I APAF-1 related killer D 1.0 1 1 228.5 10.3 188 3-231 241-437 (1221)
4 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 224.6 28.4 444 240-701 15-543 (606)
5 3rgz_A Protein brassinosteroid 1.0 1 1 220.0 17.5 172 259-435 179-355 (768)
6 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 216.6 21.7 193 260-458 13-214 (606)
7 3t6q_A CD180 antigen; protein- 1.0 1 1 215.5 23.8 191 241-433 17-212 (606)
8 3rgz_A Protein brassinosteroid 1.0 1 1 214.5 19.6 175 256-434 198-379 (768)
9 2z63_A TOLL-like receptor 4, v 1.0 1 1 213.9 23.9 194 240-435 11-212 (570)
10 3t6q_A CD180 antigen; protein- 1.0 1 1 213.5 23.4 174 260-437 14-193 (606)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=272.12 Aligned_cols=216 Identities=19% Similarity=0.225 Sum_probs=173.1
Q ss_pred CCCC-EEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHCC-C-EEEECCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 7896-299998388886431201477899999948999916446887309-8-237558999888999999883787778
Q 004573 3 KERK-RYVLILDDVWKRFSLDEVGIPEPTVDNGCKLVLTTRLKEVARSMG-C-EVIPVDLLSEDEALRLFSKHVGDYLLR 79 (744)
Q Consensus 3 l~~k-r~LivlDdv~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~-~-~~~~l~~l~~~ea~~lf~~~a~~~~~~ 79 (744)
|+++ ||||||||||+.+++ .+ +. .+||+||||||++.++..++ . ..|+|++|+++|||+||+++|+....
T Consensus 239 L~~~kr~LlVLDdv~~~~~~-~~----~~-~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~- 311 (549)
T 2a5y_B 239 LIDRPNTLFVFDDVVQEETI-RW----AQ-ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV- 311 (549)
T ss_dssp HTTSTTEEEEEEEECCHHHH-HH----HH-HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--
T ss_pred HCCCCCEEEEEECCCCCHHH-CC----CC-CCCCEEEEECCCHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCC-
T ss_conf 76898489999799971441-54----32-6998899974977999970889738989998989999999987448998-
Q ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 88978899999999159947999999762289977889999999871678878985110214663005999823548984
Q 004573 80 IPTIEPILKQVVEQCAGLPLAIVTVASSMKSEDDVDLWKNALNELKENSTSVEGMGDEVIPRLKFSYDRLMDPKIKRCFL 159 (744)
Q Consensus 80 ~~~~~~~~~~i~~~c~glPLal~~~g~~L~~~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~~fl 159 (744)
.+..++++.+|+++|+|+||||+++|+.++.+ .+ +.+ +.+....... ....+..++..||++|+ +++|.||+
T Consensus 312 ~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w---~~~-~~l~~~l~~~--~~~~i~~~l~~Sy~~L~-~~lk~~f~ 383 (549)
T 2a5y_B 312 GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF---EKM-AQLNNKLESR--GLVGVECITPYSYKSLA-MALQRCVE 383 (549)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH---HHH-HHHHHHHHHH--CSSTTCCCSSSSSSSHH-HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-HH---HHH-HHHHHHHHCC--CHHHHHHHHHCCCCCCC-HHHHHHHH
T ss_conf 55689999999999599839999999984434-48---999-8757876136--47778989751620226-79999975
Q ss_pred -----------HCCCCCCCCCCCHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCEEECHH
Q ss_conf -----------61577999633969999999991--9532201256799969999999977046310379--96876028
Q 004573 160 -----------YCALFPEDFDIPKEELIEYWIVE--GLIDVMETRQAMHYKGLAILHKLKENCLLESAED--GKCVKMHD 224 (744)
Q Consensus 160 -----------~~a~fp~~~~~~~~~l~~~w~~~--g~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~--~~~~~mHd 224 (744)
|||+||+++.|+ ++.|+++ ||+.........++.++ ++++|+++||++.... ...|+|||
T Consensus 384 ~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHd 458 (549)
T 2a5y_B 384 VLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDH 458 (549)
T ss_dssp TSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCH
T ss_pred CCCHHHHHHHHHEEEECCCCEEE----EEEEEEECCCEECCCCCCCCHHHHHH-HHHHHHHCCCEEEECCCCCEEEEECH
T ss_conf 26522336743235608997666----53311013550026778999999999-99999875883671479804999676
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 99999998832999
Q 004573 225 LVREMALDITTGSP 238 (744)
Q Consensus 225 li~~~~~~~~~~e~ 238 (744)
+||++|+++++.++
T Consensus 459 lv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 459 IIHMFLKHVVDAQT 472 (549)
T ss_dssp HHHHHHHTTSCTHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999988989
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=249.70 Aligned_cols=208 Identities=25% Similarity=0.441 Sum_probs=173.0
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHC-CC-EEEECCC-CCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9629999838888643120147789999994899991644688730-98-2375589-9988899999988378777888
Q 004573 5 RKRYVLILDDVWKRFSLDEVGIPEPTVDNGCKLVLTTRLKEVARSM-GC-EVIPVDL-LSEDEALRLFSKHVGDYLLRIP 81 (744)
Q Consensus 5 ~kr~LivlDdv~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~-~~-~~~~l~~-l~~~ea~~lf~~~a~~~~~~~~ 81 (744)
++|+||||||||+.++|..+ ++||+||||||++.++..+ +. ..+.+++ |+++||++||+..++.. .+
T Consensus 235 ~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~ 304 (1249)
T 3sfz_A 235 HPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KE 304 (1249)
T ss_dssp SCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---ST
T ss_pred CCCEEEEEECCCCHHHHHHH-------CCCCEEEEECCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC---HH
T ss_conf 78789999567997788763-------689789999277899876348843798258888788999999865798---13
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC-----CCCCCCHHHHHHHHCCCCCCHHHHH
Q ss_conf 97889999999915994799999976228997788999999987167887-----8985110214663005999823548
Q 004573 82 TIEPILKQVVEQCAGLPLAIVTVASSMKSEDDVDLWKNALNELKENSTSV-----EGMGDEVIPRLKFSYDRLMDPKIKR 156 (744)
Q Consensus 82 ~~~~~~~~i~~~c~glPLal~~~g~~L~~~~~~~~w~~~~~~l~~~~~~~-----~~~~~~i~~~l~~sy~~L~~~~~k~ 156 (744)
..++.+.+|+++|+|+||||+++|++|+.+. ..|.+.++.+....... ......+..++..||+.|+ ++.|.
T Consensus 305 ~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~-~~~~~ 381 (1249)
T 3sfz_A 305 DLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLR-EDIKD 381 (1249)
T ss_dssp TCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSC-TTTHH
T ss_pred HCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC-HHHHH
T ss_conf 4838899999984997799999999862480--57999999986504430346556446779999998998679-99999
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CEEECHHHHHHHHHHHH
Q ss_conf 9846157799963396999999999195322012567999699999999770463103799--68760289999999883
Q 004573 157 CFLYCALFPEDFDIPKEELIEYWIVEGLIDVMETRQAMHYKGLAILHKLKENCLLESAEDG--KCVKMHDLVREMALDIT 234 (744)
Q Consensus 157 ~fl~~a~fp~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~--~~~~mHdli~~~~~~~~ 234 (744)
||+|||+||+++.|+...+++.|.++ .+.+++++++|+++||++...++ .+|+||+++|+|+++.+
T Consensus 382 ~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~ 449 (1249)
T 3sfz_A 382 YYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKN 449 (1249)
T ss_dssp HHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHT
T ss_pred HHHHHCCCCCCCEECHHHHHHHHCCC------------HHHHHHHHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHH
T ss_conf 99972813799751899999885898------------889999999997446338963798118996689999987450
Q ss_pred CCC
Q ss_conf 299
Q 004573 235 TGS 237 (744)
Q Consensus 235 ~~e 237 (744)
.++
T Consensus 450 ~~~ 452 (1249)
T 3sfz_A 450 RSQ 452 (1249)
T ss_dssp GGG
T ss_pred HHH
T ss_conf 678
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=228.50 Aligned_cols=188 Identities=21% Similarity=0.320 Sum_probs=154.5
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHCCC-EEEECC------CCCHHHHHHHHHHHHCC
Q ss_conf 78962999983888864312014778999999489999164468873098-237558------99988899999988378
Q 004573 3 KERKRYVLILDDVWKRFSLDEVGIPEPTVDNGCKLVLTTRLKEVARSMGC-EVIPVD------LLSEDEALRLFSKHVGD 75 (744)
Q Consensus 3 l~~kr~LivlDdv~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~~-~~~~l~------~l~~~ea~~lf~~~a~~ 75 (744)
+.+||+||||||||+.++|+.+ .+||+||||||++.++..+.. ..|.++ +|+++|||+||++..+.
T Consensus 241 l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~ 313 (1221)
T 1vt4_I 241 KPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313 (1221)
T ss_dssp STTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCC
T ss_pred HCCCCEEEEEECCCHHHHHHHH-------CCCEEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 0478879987186818999864-------798299994437379986689708994686556896999999999997499
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCHHH
Q ss_conf 7778889788999999991599479999997622899-778899999998716788789851102146630059998235
Q 004573 76 YLLRIPTIEPILKQVVEQCAGLPLAIVTVASSMKSED-DVDLWKNALNELKENSTSVEGMGDEVIPRLKFSYDRLMDPKI 154 (744)
Q Consensus 76 ~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~L~~~~-~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~ 154 (744)
. ..++..++ |+|+||||+++|++|+.+. +...|+.. ....+..++..||+.|+ ++.
T Consensus 314 ~------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~-------------~~~~I~aaLelSYd~Lp-~ee 370 (1221)
T 1vt4_I 314 R------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV-------------NCDKLTTIIESSLNVLE-PAE 370 (1221)
T ss_dssp C------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-------------SCHHHHHHHHHHHHHSC-TTH
T ss_pred C------HHHHHHHH---HCCCHHHHHHHHHHHHCCCCCHHHHHCC-------------CHHHHHHHHHHHHHHCC-HHH
T ss_conf 8------89999999---6989999999999984889979998669-------------86189999999998488-999
Q ss_pred -HHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHHHHH
Q ss_conf -48984615779996339699999999919532201256799969999999977046310379968760289999999
Q 004573 155 -KRCFLYCALFPEDFDIPKEELIEYWIVEGLIDVMETRQAMHYKGLAILHKLKENCLLESAEDGKCVKMHDLVREMAL 231 (744)
Q Consensus 155 -k~~fl~~a~fp~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~mHdli~~~~~ 231 (744)
|.||++||+||+++.|+...++..|+++| ++.+..++++|+++||++..+...+|+|||++++++.
T Consensus 371 lK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHCCCC-----------HHHHHHHHHHHHHHCCEEEECCCCEEEEHHHHHHHHC
T ss_conf 999999971779999877999998766778-----------8999999999996198898689998986099999856
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=224.63 Aligned_cols=444 Identities=18% Similarity=0.109 Sum_probs=256.3
Q ss_pred EEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCC
Q ss_conf 68753853321110000245529982256512149999999999663999025777888735774299875998279988
Q 004573 240 YLVEAGKFGALLLEEEWKDDVEKVSLMRCRITRIPSNFPSSGCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSN 319 (744)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~L~~~~~ 319 (744)
.+...+...+.+|. ....+++.++++++.+..++... +..+++|++|++++|.+..+++..|.++++|++|++++|..
T Consensus 15 ~~~c~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 15 TYQCMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYS-FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92 (606)
T ss_dssp EEECTTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CEECCCCCCCCCCC-CCCCCCCEEECCCCCCCEECHHH-CCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCC
T ss_conf 05746888451898-88887678878889757737545-55776674886887736643977730601068867879856
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCEEECCCCCCC--CCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 85487433476555577615833446896-7238998669974389783--25422236998989955486144469775
Q 004573 320 LLRLPDSISGLINLTALMVHGCFRLRHVP-SLAKLSALKKLDLGGTEID--VVPQGLEMLAHLTYLDLNWTRILQIPDGM 396 (744)
Q Consensus 320 ~~~lp~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~--~lp~~~~~L~~L~~L~l~~~~~~~~~~~~ 396 (744)
....|..++++.+|++|++++|......+ .++++.+|++|+++++.+. .+|..+.++++|++|++.++.+..+++..
T Consensus 93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~ 172 (606)
T 3vq2_A 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172 (606)
T ss_dssp CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTT
T ss_pred CCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCEECCHHH
T ss_conf 30485220786537888703775554451134898877989687885232530686732677778876688531057334
Q ss_pred CCCCCCCC----EEECCCCCCCCC-HHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEEEECCCCCC-------
Q ss_conf 67998775----898476543140-664315589678854159860687642421046513889960245333-------
Q 004573 397 LSNLSRIQ----HLRLDRVAFENA-EDILRLMKLEIFGVRFDHLQDYHRYLSLQSRRRLSKYYFTVEKNAYTY------- 464 (744)
Q Consensus 397 l~~l~~L~----~L~l~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~------- 464 (744)
+..+.+|+ .|+++++.+..+ .......+|+.+++.++.............+..++.+.+.........
T Consensus 173 ~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~ 252 (606)
T 3vq2_A 173 LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252 (606)
T ss_dssp THHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCG
T ss_pred HHHHHCCCCCCCEEECCCCCCCEECCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 12120342002430046897532571105676043352467856166778886026656523141111036774102681
Q ss_pred ------------------------CCCCCCCCCCEEEEEECCCC------CCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf ------------------------34653344442899613686------435423431443013784323467888886
Q 004573 465 ------------------------ARGEWDKYVSLVELRICENS------VVLPRDIQQLHFNVCGGMRSLRDVPSLKDT 514 (744)
Q Consensus 465 ------------------------~~~~~~~~~~~~~L~~~~~~------~~~~~~L~~L~l~~~~~l~~l~~l~~l~~l 514 (744)
....+....++..+...... ....++|+.|++.+|.- ..+ +.+ .+
T Consensus 253 ~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~l---p~~-~l 327 (606)
T 3vq2_A 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQF---PTL-DL 327 (606)
T ss_dssp GGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSC---CCC-CC
T ss_pred HHHHHHHHCCHHHEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHCCCCCCCCEEECCCCCC-CCC---CCC-CC
T ss_conf 7766665434745012366555543222354887898771476604435433401177897646667-654---667-88
Q ss_pred CCCCEEEEEECCCCCEEECCCCCCCHHHHHHHHHHCCCC---------------C----------HHHHH-------HHH
Q ss_conf 788379994048854310174200022244888840831---------------0----------15576-------520
Q 004573 515 TDLRECVIYRCYEMEFVFCLSSCYGILETLEYLLLQRLV---------------D----------LKAIF-------QIA 562 (744)
Q Consensus 515 ~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~---------------~----------L~~l~-------~~~ 562 (744)
++|+.|.+.++.....+.. ..+++|+.|+++++. + +..++ .+.
T Consensus 328 ~~L~~L~l~~n~~~~~~~~-----~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~ 402 (606)
T 3vq2_A 328 PFLKSLTLTMNKGSISFKK-----VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQ 402 (606)
T ss_dssp SSCCEEEEESCSSCEECCC-----CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCC
T ss_pred CCCCEEECCCCCCCCCHHH-----CCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCHHHCCCCCCCC
T ss_conf 7556445447868531000-----24898887977587368775201221467755486788995300055406888889
Q ss_pred HHHHCCCCCCCCCCCC-CCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHH-HHCCCCCCCCCCCCCC
Q ss_conf 0100012246899999-9412789799994688710013877456899855898723562244-4224777732333212
Q 004573 563 EDEVNASSLRTQTPSP-PNIVFRLKRLIMSDCGKIRKLFSPELLPSLQNLEEIQVKYCGGLEE-IIAASDDDEEGENNEA 640 (744)
Q Consensus 563 ~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~C~~L~~l~p~~~l~~l~~L~~L~l~~c~~l~~-i~~~~~~~~~~~~~~~ 640 (744)
.-..+........+.. ...+.+|+.|++.+| .+... ++..+..+++|++|++.+|.-... ++........+...+.
T Consensus 403 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 480 (606)
T 3vq2_A 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT-NTKID-FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480 (606)
T ss_dssp EEECTTSEEESTTTTTTTTTCTTCCEEECTTS-CCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred EEECCCCCCCCCCCHHHHHCCCCCCEEECCCC-CCCCC-CHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEEC
T ss_conf 65898870587537645646213788989689-78743-35553477878989898983798546776045788998989
Q ss_pred CCCC--CC---CCCCCCCCCEECCCCCCCCCCC-CCCCCEECCCCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 4888--75---5545876443415545221112-346532003765458736687774337655322
Q 004573 641 AGNN--SI---KSLALPKLRVLYLKELPNLMSI-CSRRSTLVCNSLETIVVLRCPEIKRLPVLLPHL 701 (744)
Q Consensus 641 ~~~~--~~---~~~~~p~L~~L~l~~c~~L~~l-~~~~~~~~~~~L~~L~i~~C~~L~~lP~~l~~L 701 (744)
+++. .+ ....+++|++|+++++ .+..+ +.. ...+++|+.|++++|. ++++|..+..+
T Consensus 481 s~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~--~~~l~~L~~L~l~~N~-l~~~p~~~~~l 543 (606)
T 3vq2_A 481 SKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSH--YNQLYSLSTLDCSFNR-IETSKGILQHF 543 (606)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGG--TTTCTTCCEEECTTSC-CCCEESCGGGS
T ss_pred CCCCCCCCCHHHHCCCCCCCEEECCCC-CCCCCCHHH--CCCCCCCCEEECCCCC-CCCCCHHHHHH
T ss_conf 888577648656154646898989899-578748777--0688768988898983-76668767521
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=219.96 Aligned_cols=172 Identities=22% Similarity=0.302 Sum_probs=75.4
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 55299822565121499999999996639990257778887357742998759982799888548743347655557761
Q 004573 259 DVEKVSLMRCRITRIPSNFPSSGCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINLTALMV 338 (744)
Q Consensus 259 ~l~~l~l~~~~~~~l~~~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L 338 (744)
+++.+++++|.+..... ...+++|++|++++|.+....+. +.++++|++|++++|......|..++.+.+|++|++
T Consensus 179 ~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 254 (768)
T 3rgz_A 179 ELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254 (768)
T ss_dssp TCCEEECCSSEEESCCB---CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEEC
T ss_pred CCCEEECCCCCCCCCCC---CCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEC
T ss_conf 88989897880346578---45478689898928827887711-126999998979488587816577744888898989
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCCCCCCC-CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-
Q ss_conf 58334468967238998669974389783-254222369-989899554861444697756799877589847654314-
Q 004573 339 HGCFRLRHVPSLAKLSALKKLDLGGTEID-VVPQGLEML-AHLTYLDLNWTRILQIPDGMLSNLSRIQHLRLDRVAFEN- 415 (744)
Q Consensus 339 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~L-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~- 415 (744)
++|.....+|.. .+++|++|+++++.+. .+|..+... ++|++|++.+|.+....+..++++++|+.|++.+|.+..
T Consensus 255 s~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 333 (768)
T 3rgz_A 255 SSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333 (768)
T ss_dssp CSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred CCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCC
T ss_conf 888665716724-3687898979178557725888884468688998968967784236775587766778978852573
Q ss_pred C--HHHHCCCCCCEEEEEECCC
Q ss_conf 0--6643155896788541598
Q 004573 416 A--EDILRLMKLEIFGVRFDHL 435 (744)
Q Consensus 416 ~--~~l~~l~~L~~L~l~~~~~ 435 (744)
+ ..+..+++|+.|++..+.+
T Consensus 334 ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 334 LPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp CCHHHHTTCTTCCEEECCSSEE
T ss_pred CCHHHHHCCCCCCEEECCCCCC
T ss_conf 7978872488887884847843
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=216.63 Aligned_cols=193 Identities=18% Similarity=0.222 Sum_probs=108.5
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 52998225651214999999999966399902577788873577429987599827998885487433476555577615
Q 004573 260 VEKVSLMRCRITRIPSNFPSSGCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINLTALMVH 339 (744)
Q Consensus 260 l~~l~l~~~~~~~l~~~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~ 339 (744)
.+.+++++..++.+|..++ +++++|++++|.+..++...|.++++|++|++++|......|..+.++.+|++|+++
T Consensus 13 ~~~~~c~~~~l~~ip~~~~----~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP----SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCCEECCCCCCCCCCCCCC----CCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECC
T ss_conf 9705746888451898888----876788788897577375455577667488688773664397773060106886787
Q ss_pred CCCCCCCCC-CCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 833446896-7238998669974389783254-22236998989955486144469-77567998775898476543140
Q 004573 340 GCFRLRHVP-SLAKLSALKKLDLGGTEIDVVP-QGLEMLAHLTYLDLNWTRILQIP-DGMLSNLSRIQHLRLDRVAFENA 416 (744)
Q Consensus 340 ~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp-~~~~~L~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~ 416 (744)
+|......| .++++.+|++|+++++.+..++ ..++++++|++|++.+|.+..+. +..++++++|++|++++|.+...
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred CCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCEEC
T ss_conf 98563048522078653788870377555445113489887798968788523253068673267777887668853105
Q ss_pred --HHHHCCCC----CCEEEEEECCCCCHHHHHHHHHCCCCCEEEEEEE
Q ss_conf --66431558----9678854159860687642421046513889960
Q 004573 417 --EDILRLMK----LEIFGVRFDHLQDYHRYLSLQSRRRLSKYYFTVE 458 (744)
Q Consensus 417 --~~l~~l~~----L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~ 458 (744)
..+..+.+ +..+++..+.+........ ....|+.+.+...
T Consensus 169 ~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~--~~~~L~~L~L~~n 214 (606)
T 3vq2_A 169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF--QGIKLHELTLRGN 214 (606)
T ss_dssp CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTT--TTCEEEEEEEESC
T ss_pred CHHHHHHHHCCCCCCCEEECCCCCCCEECCCCC--CCCEEEEEECCCC
T ss_conf 733412120342002430046897532571105--6760433524678
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=215.55 Aligned_cols=191 Identities=17% Similarity=0.059 Sum_probs=140.3
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCC
Q ss_conf 87538533211100002455299822565121499999999996639990257778887357742998759982799888
Q 004573 241 LVEAGKFGALLLEEEWKDDVEKVSLMRCRITRIPSNFPSSGCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNL 320 (744)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~L~~~~~~ 320 (744)
+...+.....+|. ..+..++.+++++|.+..++... +..+++|++|++++|.+..+.+..|.++++|++|++++|...
T Consensus 17 ~~c~~~~l~~iP~-~l~~~l~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 94 (606)
T 3t6q_A 17 YNCENLGLNEIPG-TLPNSTECLEFSFNVLPTIQNTT-FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94 (606)
T ss_dssp EECTTSCCSSCCT-TSCTTCCEEECTTCCCSEECTTT-STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS
T ss_pred EECCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCHHH-HCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCC
T ss_conf 7777798062867-78986758981587347179667-256766528978898355248511368433676448898565
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 5487433476555577615833446896-7238998669974389783254-2223699898995548614446977567
Q 004573 321 LRLPDSISGLINLTALMVHGCFRLRHVP-SLAKLSALKKLDLGGTEIDVVP-QGLEMLAHLTYLDLNWTRILQIPDGMLS 398 (744)
Q Consensus 321 ~~lp~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp-~~~~~L~~L~~L~l~~~~~~~~~~~~l~ 398 (744)
...|..++++.+|++|++++|......+ .++.+++|++|+++++.+..++ ..+..+++|++|++.++.+..+++..+.
T Consensus 95 ~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 174 (606)
T 3t6q_A 95 FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS 174 (606)
T ss_dssp EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHH
T ss_pred CCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHH
T ss_conf 45865523442153765212676657810122378223898879834114765456876568777656844554965633
Q ss_pred CCCCCC--EEECCCCCCCCC-HHHHCCCCCCEEEEEEC
Q ss_conf 998775--898476543140-66431558967885415
Q 004573 399 NLSRIQ--HLRLDRVAFENA-EDILRLMKLEIFGVRFD 433 (744)
Q Consensus 399 ~l~~L~--~L~l~~~~~~~~-~~l~~l~~L~~L~l~~~ 433 (744)
.+++|+ .|++.+|.+... .......+|+.+.+.++
T Consensus 175 ~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~ 212 (606)
T 3t6q_A 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212 (606)
T ss_dssp TTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTC
T ss_pred HHCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCC
T ss_conf 22156403896679814754866730010013556772
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=214.52 Aligned_cols=175 Identities=20% Similarity=0.199 Sum_probs=92.2
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 02455299822565121499999999996639990257778887357742998759982799888548743347655557
Q 004573 256 WKDDVEKVSLMRCRITRIPSNFPSSGCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINLTA 335 (744)
Q Consensus 256 ~~~~l~~l~l~~~~~~~l~~~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 335 (744)
...+++.+++++|.+...... +..+++|++|++++|.+.......+..+++|++|++++|......|.. .+.+|++
T Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~ 273 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQY 273 (768)
T ss_dssp TCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCE
T ss_pred CCCCCCEEECCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCE
T ss_conf 478689898928827887711--126999998979488587816577744888898989888665716724--3687898
Q ss_pred EECCCCCCCCCCC-CCCC-CCCCCEEECCCCCCC-CCCCCCCCCCCCCEEECCCCCCC-CCCCCCCCCCCCCCEEECCCC
Q ss_conf 7615833446896-7238-998669974389783-25422236998989955486144-469775679987758984765
Q 004573 336 LMVHGCFRLRHVP-SLAK-LSALKKLDLGGTEID-VVPQGLEMLAHLTYLDLNWTRIL-QIPDGMLSNLSRIQHLRLDRV 411 (744)
Q Consensus 336 L~L~~~~~~~~~~-~~~~-l~~L~~L~l~~~~i~-~lp~~~~~L~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~ 411 (744)
|++++|.....+| .+.. +++|++|+++++.+. .+|..+.++++|++|++.+|.+. .+|...+.++++|+.|++++|
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred EECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCC
T ss_conf 97917855772588888446868899896896778423677558776677897885257379788724888878848478
Q ss_pred CCCCC--HHHHCCC-CCCEEEEEECC
Q ss_conf 43140--6643155-89678854159
Q 004573 412 AFENA--EDILRLM-KLEIFGVRFDH 434 (744)
Q Consensus 412 ~~~~~--~~l~~l~-~L~~L~l~~~~ 434 (744)
.+... ..+..+. +|+.|++..+.
T Consensus 354 ~l~~~~p~~l~~l~~~L~~L~Ls~N~ 379 (768)
T 3rgz_A 354 EFSGELPESLTNLSASLLTLDLSSNN 379 (768)
T ss_dssp EEEECCCTTHHHHTTTCSEEECCSSE
T ss_pred CCCCCCCHHHHHHHCCCCEEECCCCC
T ss_conf 43762309898632277199862787
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=213.94 Aligned_cols=194 Identities=19% Similarity=0.140 Sum_probs=154.9
Q ss_pred EEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCC
Q ss_conf 68753853321110000245529982256512149999999999663999025777888735774299875998279988
Q 004573 240 YLVEAGKFGALLLEEEWKDDVEKVSLMRCRITRIPSNFPSSGCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSN 319 (744)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~L~~~~~ 319 (744)
.+...+.+...+|. .....++.++++++.+..++... +..+++|++|++++|.+..++...|.++++|++|++++|..
T Consensus 11 ~~~c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 11 TYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp EEECCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTT-TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEEECCCCCCCCCC-CCCCCCCEEECCCCCCCCCCHHH-HHCCCCCEEEECCCCCCCCCCCCCCCCCHHCCEEECCCCCC
T ss_conf 89807887561677-76655648976588547328657-42788862998989957714821014802188876769957
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCEEECCCCCCCC--CCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 85487433476555577615833446896-72389986699743897832--5422236998989955486144469775
Q 004573 320 LLRLPDSISGLINLTALMVHGCFRLRHVP-SLAKLSALKKLDLGGTEIDV--VPQGLEMLAHLTYLDLNWTRILQIPDGM 396 (744)
Q Consensus 320 ~~~lp~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~--lp~~~~~L~~L~~L~l~~~~~~~~~~~~ 396 (744)
....|..++++.+|++|++++|......+ .++.+.+|++|+++++.+.. +|..+.++++|++|++.++.+..+++..
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~ 168 (570)
T 2z63_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG
T ss_pred CCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECCHHHHCCCCCCCEEECCCCCCCEECHHH
T ss_conf 74497561575013323165466234787665445555577567874220037044424688787867687013246788
Q ss_pred CCCCCCC----CEEECCCCCCCCC-HHHHCCCCCCEEEEEECCC
Q ss_conf 6799877----5898476543140-6643155896788541598
Q 004573 397 LSNLSRI----QHLRLDRVAFENA-EDILRLMKLEIFGVRFDHL 435 (744)
Q Consensus 397 l~~l~~L----~~L~l~~~~~~~~-~~l~~l~~L~~L~l~~~~~ 435 (744)
+..+++| ..+++.++.+..+ .......+|+.+.+..+..
T Consensus 169 ~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~ 212 (570)
T 2z63_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 212 (570)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCS
T ss_pred CCCHHCCCHHHHHCCCCCCCCEECCHHHHCCCCCEEEECCCCCC
T ss_conf 05631044143312357897532097780027611686335655
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=213.49 Aligned_cols=174 Identities=20% Similarity=0.165 Sum_probs=109.2
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 52998225651214999999999966399902577788873577429987599827998885487433476555577615
Q 004573 260 VEKVSLMRCRITRIPSNFPSSGCRSLSTLLLQHNYIEEIPEFFFEHLTGLKILDLSGNSNLLRLPDSISGLINLTALMVH 339 (744)
Q Consensus 260 l~~l~l~~~~~~~l~~~~~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~ 339 (744)
-+.++..+..+..+|..++ +.+++|++++|.+..+++..|.++++|++|++++|......|..++++.+|++|+++
T Consensus 14 ~~~~~c~~~~l~~iP~~l~----~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 89 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLP----NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC----TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCCCCCCCCCCC----CCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECC
T ss_conf 7237777798062867789----867589815873471796672567665289788983552485113684336764488
Q ss_pred CCCCCCCCC-CCCCCCCCCEEECCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-
Q ss_conf 833446896-723899866997438978325-42223699898995548614446977567998775898476543140-
Q 004573 340 GCFRLRHVP-SLAKLSALKKLDLGGTEIDVV-PQGLEMLAHLTYLDLNWTRILQIPDGMLSNLSRIQHLRLDRVAFENA- 416 (744)
Q Consensus 340 ~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l-p~~~~~L~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~- 416 (744)
+|......+ .++.+.+|++|+++++.+..+ +..+.++++|++|++++|.+..++...+..+++|+.|++++|.+...
T Consensus 90 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 169 (606)
T 3t6q_A 90 ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS 169 (606)
T ss_dssp TCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEEC
T ss_pred CCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
T ss_conf 98565458655234421537652126766578101223782238988798341147654568765687776568445549
Q ss_pred -HHHHCCCCCC--EEEEEECCCCC
Q ss_conf -6643155896--78854159860
Q 004573 417 -EDILRLMKLE--IFGVRFDHLQD 437 (744)
Q Consensus 417 -~~l~~l~~L~--~L~l~~~~~~~ 437 (744)
..+..+.+|+ .+++..+....
T Consensus 170 ~~~~~~l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 170 KEDMSSLQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp HHHHHTTTTCCSEEEECTTCCCCE
T ss_pred HHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 656332215640389667981475
Done!