Query 004575
Match_columns 744
No_of_seqs 196 out of 252
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 01:39:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004575.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004575hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2175 Protein predicted to b 100.0 6.6E-96 1E-100 797.3 31.5 442 28-485 4-457 (458)
2 PF04802 SMK-1: Component of I 100.0 3.1E-65 6.8E-70 511.1 18.2 191 40-230 2-193 (193)
3 PF10508 Proteasom_PSMB: Prote 96.2 0.51 1.1E-05 54.8 21.0 200 232-466 75-278 (503)
4 KOG2160 Armadillo/beta-catenin 95.7 1.5 3.3E-05 48.7 21.1 191 190-418 89-280 (342)
5 KOG1991 Nuclear transport rece 95.4 10 0.00022 47.3 27.9 133 62-220 437-581 (1010)
6 KOG0166 Karyopherin (importin) 94.3 6.3 0.00014 46.2 21.7 242 183-466 195-436 (514)
7 PF01602 Adaptin_N: Adaptin N 92.9 6.4 0.00014 44.8 18.7 104 184-308 116-219 (526)
8 PF04499 SAPS: SIT4 phosphatas 92.8 23 0.00051 41.3 24.3 289 165-479 4-395 (475)
9 KOG2175 Protein predicted to b 92.3 1.1 2.3E-05 51.5 11.2 180 289-488 101-304 (458)
10 cd00020 ARM Armadillo/beta-cat 91.0 7 0.00015 34.5 13.1 111 183-308 8-118 (120)
11 PF12460 MMS19_C: RNAPII trans 91.0 32 0.0007 38.9 22.1 239 154-430 109-404 (415)
12 PF01602 Adaptin_N: Adaptin N 90.8 2.8 6.2E-05 47.6 12.9 227 235-501 115-372 (526)
13 KOG0166 Karyopherin (importin) 90.7 14 0.0003 43.5 18.2 201 226-458 144-344 (514)
14 PF10508 Proteasom_PSMB: Prote 90.3 43 0.00092 39.2 24.6 268 109-422 76-368 (503)
15 PLN03200 cellulose synthase-in 90.1 63 0.0014 44.1 25.1 216 182-446 446-663 (2102)
16 PF03224 V-ATPase_H_N: V-ATPas 89.0 22 0.00047 38.6 17.3 254 151-438 23-287 (312)
17 KOG2734 Uncharacterized conser 86.2 74 0.0016 37.1 19.5 199 224-446 166-373 (536)
18 PF12348 CLASP_N: CLASP N term 84.5 36 0.00079 34.6 15.2 187 192-418 15-204 (228)
19 PTZ00429 beta-adaptin; Provisi 84.0 1.2E+02 0.0026 37.6 26.6 159 220-419 119-284 (746)
20 PLN03200 cellulose synthase-in 79.7 2.6E+02 0.0057 38.6 27.6 212 232-476 607-840 (2102)
21 PF14664 RICTOR_N: Rapamycin-i 79.7 28 0.00061 39.3 13.2 143 173-340 48-199 (371)
22 PF04826 Arm_2: Armadillo-like 79.6 94 0.002 33.4 16.7 70 392-465 135-204 (254)
23 cd00020 ARM Armadillo/beta-cat 75.9 23 0.0005 31.2 9.2 77 230-311 3-79 (120)
24 PF11707 Npa1: Ribosome 60S bi 74.7 1.3E+02 0.0028 33.2 16.5 150 172-336 48-211 (330)
25 PF04826 Arm_2: Armadillo-like 73.3 1.4E+02 0.003 32.2 16.5 186 181-418 11-203 (254)
26 PF04499 SAPS: SIT4 phosphatas 72.0 16 0.00034 42.6 8.9 97 168-266 49-151 (475)
27 COG5240 SEC21 Vesicle coat com 71.5 1.2E+02 0.0025 36.7 15.4 144 152-309 230-403 (898)
28 KOG1062 Vesicle coat complex A 70.2 1E+02 0.0022 38.3 15.0 68 237-314 316-383 (866)
29 PF12755 Vac14_Fab1_bd: Vacuol 68.0 49 0.0011 30.4 9.5 59 235-299 28-86 (97)
30 KOG0946 ER-Golgi vesicle-tethe 67.9 2.8E+02 0.0061 34.7 17.9 150 158-316 142-302 (970)
31 KOG1248 Uncharacterized conser 66.2 4E+02 0.0087 34.7 28.5 99 198-309 668-766 (1176)
32 PF12719 Cnd3: Nuclear condens 63.0 68 0.0015 34.6 11.1 99 197-309 40-142 (298)
33 PF11841 DUF3361: Domain of un 59.7 2E+02 0.0044 29.1 14.2 101 226-333 40-152 (160)
34 KOG2073 SAP family cell cycle 58.4 4.8E+02 0.01 33.0 19.8 129 161-309 79-219 (838)
35 PF02985 HEAT: HEAT repeat; I 57.4 17 0.00037 26.1 3.6 30 235-264 1-30 (31)
36 KOG1992 Nuclear export recepto 54.8 5.4E+02 0.012 32.5 20.7 113 364-484 263-397 (960)
37 KOG1293 Proteins containing ar 54.7 1.9E+02 0.0042 35.2 13.4 116 361-487 436-553 (678)
38 PF08569 Mo25: Mo25-like; Int 54.4 3.6E+02 0.0077 30.3 16.9 193 223-446 65-266 (335)
39 PF13251 DUF4042: Domain of un 54.0 2.3E+02 0.0049 29.2 12.4 155 249-422 1-176 (182)
40 KOG2085 Serine/threonine prote 52.5 99 0.0021 35.7 10.2 215 34-271 169-422 (457)
41 COG5369 Uncharacterized conser 52.0 4E+02 0.0087 32.2 15.1 165 159-342 354-529 (743)
42 cd00256 VATPase_H VATPase_H, r 51.6 4.5E+02 0.0097 30.6 24.4 221 181-443 52-285 (429)
43 KOG2073 SAP family cell cycle 49.6 6.5E+02 0.014 31.9 19.5 243 10-265 18-272 (838)
44 KOG1991 Nuclear transport rece 48.2 7.2E+02 0.016 32.0 21.4 143 242-419 470-623 (1010)
45 KOG0168 Putative ubiquitin fus 47.0 1.8E+02 0.004 36.5 11.8 110 318-444 544-653 (1051)
46 PF11707 Npa1: Ribosome 60S bi 43.2 5E+02 0.011 28.7 17.7 174 224-421 47-238 (330)
47 KOG2956 CLIP-associating prote 43.0 2.4E+02 0.0052 33.3 11.5 192 66-267 168-405 (516)
48 KOG3036 Protein involved in ce 39.1 1.6E+02 0.0035 32.1 8.8 68 374-442 104-176 (293)
49 PF12460 MMS19_C: RNAPII trans 38.1 6.5E+02 0.014 28.6 16.1 64 206-274 342-405 (415)
50 PF12922 Cnd1_N: non-SMC mitot 37.5 1E+02 0.0022 30.7 6.8 64 300-382 100-167 (171)
51 PF05536 Neurochondrin: Neuroc 37.0 8E+02 0.017 29.3 17.3 204 182-422 5-215 (543)
52 PF10257 RAI16-like: Retinoic 37.0 91 0.002 34.9 7.0 78 385-465 3-84 (353)
53 PF14500 MMS19_N: Dos2-interac 36.6 5.8E+02 0.012 27.5 13.0 164 239-443 4-168 (262)
54 smart00638 LPD_N Lipoprotein N 36.2 2.5E+02 0.0055 33.0 10.9 75 201-275 440-521 (574)
55 PF01603 B56: Protein phosphat 36.2 5.9E+02 0.013 29.1 13.5 202 41-271 131-378 (409)
56 KOG2160 Armadillo/beta-catenin 35.8 2E+02 0.0044 32.5 9.3 97 160-267 146-244 (342)
57 PF05505 Ebola_NP: Ebola nucle 34.3 7.6E+02 0.017 29.7 13.7 25 572-597 461-485 (717)
58 PF10363 DUF2435: Protein of u 33.6 2.9E+02 0.0063 25.2 8.5 75 182-268 3-77 (92)
59 cd03572 ENTH_epsin_related ENT 32.9 2.7E+02 0.0058 27.0 8.5 54 391-447 38-92 (122)
60 PF12783 Sec7_N: Guanine nucle 32.8 4.5E+02 0.0098 25.7 10.5 37 226-262 65-101 (168)
61 PF06334 Orthopox_A47: Orthopo 31.5 32 0.0007 35.3 2.1 84 18-101 68-179 (244)
62 smart00288 VHS Domain present 30.8 3.5E+02 0.0076 25.9 9.1 76 158-234 57-133 (133)
63 cd03568 VHS_STAM VHS domain fa 30.2 5.4E+02 0.012 25.3 10.4 107 186-309 3-109 (144)
64 smart00185 ARM Armadillo/beta- 30.1 90 0.002 22.5 3.9 36 384-419 5-40 (41)
65 PF00790 VHS: VHS domain; Int 29.0 5.3E+02 0.011 24.8 11.4 109 184-309 6-117 (140)
66 PF13001 Ecm29: Proteasome sta 28.1 1E+03 0.023 27.9 16.2 169 234-430 319-497 (501)
67 PF14500 MMS19_N: Dos2-interac 27.3 8.1E+02 0.018 26.4 16.4 140 250-420 98-237 (262)
68 PF06371 Drf_GBD: Diaphanous G 26.9 2.4E+02 0.0051 27.7 7.4 34 229-262 153-186 (187)
69 PF11894 DUF3414: Protein of u 26.9 1.8E+03 0.038 30.2 17.9 57 252-309 582-638 (1691)
70 KOG4035 Coeffector of mDia Rho 26.7 1E+03 0.023 27.5 13.1 199 101-311 125-361 (411)
71 PF13646 HEAT_2: HEAT repeats; 26.6 2.6E+02 0.0056 23.5 6.8 27 235-261 32-58 (88)
72 KOG1062 Vesicle coat complex A 26.6 1.4E+03 0.03 29.0 19.5 105 167-275 69-183 (866)
73 PF08045 CDC14: Cell division 26.5 8.7E+02 0.019 26.5 15.0 126 201-340 108-253 (257)
74 smart00185 ARM Armadillo/beta- 26.2 1.4E+02 0.0031 21.5 4.4 35 228-262 6-40 (41)
75 PF03224 V-ATPase_H_N: V-ATPas 25.4 5.5E+02 0.012 27.9 10.5 105 361-467 70-181 (312)
76 PF04821 TIMELESS: Timeless pr 25.3 8.7E+02 0.019 26.1 14.7 47 318-381 166-212 (266)
77 PF12231 Rif1_N: Rap1-interact 24.7 1E+03 0.022 26.7 13.3 163 297-491 62-231 (372)
78 PF08569 Mo25: Mo25-like; Int 24.7 1E+03 0.022 26.7 16.6 167 225-419 98-282 (335)
79 PF15005 IZUMO: Izumo sperm-eg 24.4 82 0.0018 31.9 3.6 93 95-192 3-100 (160)
80 PF00790 VHS: VHS domain; Int 24.2 4.6E+02 0.01 25.2 8.6 76 158-234 62-140 (140)
81 PF08767 CRM1_C: CRM1 C termin 24.1 6.2E+02 0.013 28.0 10.7 60 197-263 133-194 (319)
82 PRK09687 putative lyase; Provi 24.0 3.3E+02 0.0072 29.5 8.4 77 222-308 39-118 (280)
83 KOG0946 ER-Golgi vesicle-tethe 24.0 1.6E+03 0.034 28.6 20.6 238 181-487 21-262 (970)
84 PF08167 RIX1: rRNA processing 23.9 7.2E+02 0.016 24.6 11.4 123 238-386 29-152 (165)
85 KOG1061 Vesicle coat complex A 23.8 3.7E+02 0.0079 33.4 9.3 241 239-505 126-422 (734)
86 PF11698 V-ATPase_H_C: V-ATPas 23.7 4.4E+02 0.0096 25.5 8.2 60 361-421 57-116 (119)
87 PF00514 Arm: Armadillo/beta-c 23.4 1.8E+02 0.004 21.7 4.6 36 384-419 5-40 (41)
88 PF04821 TIMELESS: Timeless pr 23.1 3.5E+02 0.0075 29.2 8.3 86 379-466 97-208 (266)
89 cd03568 VHS_STAM VHS domain fa 22.9 5.9E+02 0.013 25.0 9.2 76 158-235 57-133 (144)
90 PF12717 Cnd1: non-SMC mitotic 22.8 5.4E+02 0.012 25.6 9.2 79 182-274 25-104 (178)
91 PF14911 MMS22L_C: S-phase gen 22.7 3.1E+02 0.0067 31.4 8.1 61 202-266 229-290 (373)
92 PF14278 TetR_C_8: Transcripti 22.0 2E+02 0.0044 23.5 5.1 68 172-243 6-76 (77)
93 PF04988 AKAP95: A-kinase anch 21.8 1.8E+02 0.0038 29.7 5.3 98 168-276 11-115 (165)
94 PTZ00429 beta-adaptin; Provisi 21.2 1.7E+03 0.036 27.9 25.7 68 232-306 177-244 (746)
95 PF13001 Ecm29: Proteasome sta 21.1 3.8E+02 0.0082 31.5 8.7 131 170-311 300-444 (501)
96 PF00514 Arm: Armadillo/beta-c 21.0 1.8E+02 0.004 21.7 4.2 34 228-261 6-39 (41)
97 PF05804 KAP: Kinesin-associat 20.9 1.7E+03 0.036 27.8 19.0 232 181-463 126-358 (708)
98 cd03569 VHS_Hrs_Vps27p VHS dom 20.8 6.6E+02 0.014 24.5 9.0 76 158-235 61-137 (142)
99 PF04388 Hamartin: Hamartin pr 20.4 7.2E+02 0.016 30.5 11.1 113 267-419 26-139 (668)
No 1
>KOG2175 consensus Protein predicted to be involved in carbohydrate metabolism [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.6e-96 Score=797.33 Aligned_cols=442 Identities=45% Similarity=0.756 Sum_probs=417.6
Q ss_pred cchHHHH-HHHHhccHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHhcCChhhHHhhhcchhHhHHhhhcccCCCCC
Q 004575 28 IADQMRL-TELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVP 106 (744)
Q Consensus 28 ~~~~~rl-~~~Il~~~~YI~KLl~LF~~cEdlenle~Lh~L~~IvK~IilLNd~~I~E~llsDe~i~~VVG~LEYDPe~p 106 (744)
.+++.|. ..+.+++++||+||+++|+.|||++++++||++|+|+|+||++|...|+|.|++|++||+|+|||||||++|
T Consensus 4 ~~~~~r~~~~~~ie~e~~f~~Li~lF~~Ced~e~~d~L~~l~~Iik~i~~ln~~~iLe~~~~d~~im~v~g~lEydp~~~ 83 (458)
T KOG2175|consen 4 QTDQRREKLVLALENENYFQKLIELFHTCEDLENTDGLHHLFSIIKNIFLLNKSDILESIFDDECIMDVIGCLEYDPAVP 83 (458)
T ss_pred ccHHHHHHHHHHHhcchHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCchHHHHHhccccccccccccccCccCC
Confidence 4556665 246677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchHHHhhhcCCceeeeecCChHHHHHHHhhhhcceeeehhcc--cccchhhHHhHHHHHHhhHHHHHHHhhcChHHH
Q 004575 107 HVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLA--RVLDEATVANLNSIIHGNNAYVVSLLKDDSTFI 184 (744)
Q Consensus 107 ~~~nHR~fL~~~akFKEVIPI~d~~i~~KIHqTYRLqYLKDVVLa--R~LDD~t~s~LnS~IffNqveIV~~Lq~d~~FL 184 (744)
++++||+||...++|||||||.||.++.|||||||+||||||||| +++||++++++||+||+|+++||++||+|..|+
T Consensus 84 ~~k~HR~~l~~~~~f~e~ipi~dp~ll~kIhqt~r~q~l~d~vl~~~~~~~~a~~~~l~s~i~~~~~~ii~~lqed~~~l 163 (458)
T KOG2175|consen 84 QSKKHREFLSLLAKFKEVIPISDPELLAKIHQTFRVQYLKDVVLPEPGVFDEATGNTLNSFIFFNKVNIVSLLQEDEKFL 163 (458)
T ss_pred ChhhhHHHHHhhccceeeeecCCHHHHHHHHHHHHHHHhheeeecCCcchhcchhHHHHHHHHHhhhhhhhhhhcCchHH
Confidence 998899999999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCChhhhHHHHHHHHHHHhc
Q 004575 185 QELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ 264 (744)
Q Consensus 185 ~eLF~~l~~~~~~~e~rrd~v~FL~E~c~~sK~LQ~~~r~~lfk~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~iie~ 264 (744)
.+||+++++++++.++|++++.|+||||+++|+||++.|.+||++|++.|||++++++++++|.++|.+++||+..++++
T Consensus 164 ~eLf~~l~~~~t~~qkr~~li~~lke~c~~s~~L~~~~~~~~fkTlv~~~i~~~le~~~~~~d~~~r~~~~di~~~~ve~ 243 (458)
T KOG2175|consen 164 IELFARLRSESTDDQKRDDLVHFLKEFCSFSKALQPQSRDAFFKTLVNKGILDALEYVLKMPDTQVRSAATDILARLVEM 243 (458)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhccCCC-----cHHHHHHHHhhcCCcchH--HHHHHHHHHhcCCCCCChh--hHHHHHHHHHHHHHHHHH
Q 004575 265 DPNLLRSYVVRQEGIP-----LLGLLVKGMITDFGEDMH--CQFLEILRSLLDSYTLSGA--QRDTIIEIFYEKHLGQLI 335 (744)
Q Consensus 265 dPslvR~~i~~qe~~~-----Ll~lLi~~ll~D~~~gL~--~Ql~eaLk~LLDp~~m~~~--ekd~fL~~FY~~~~~~L~ 335 (744)
+|.++|++..+++..+ ++++++++|++|.++.+- +|++.++++||||++|.++ ++.+|+++||+.|++.+.
T Consensus 244 ~~~~i~~~~~~~~~~~~~~~~~~nl~~s~~l~d~d~~~~~~s~~~~i~~tll~~~~~~~~~~~~se~l~~~~~~c~~~~~ 323 (458)
T KOG2175|consen 244 SPSMIRSFTLGEALDPDDEKLLLNLAISHMLEDFDPELSGASQLMLILSTLLDPENMLTLASEKSEFLNFFYKHCMHSLS 323 (458)
T ss_pred CHHHHHHHHHHhhcCchhhHHHHHHHHHhhccccCccccchHHHHHHHHHhhCccccCCccchhHHHhhhhhccccccCC
Confidence 9999999999876555 999999999999988775 8999999999999999885 899999999999987665
Q ss_pred HHHHhcCCccccccccCCCCCcCCCcHHHHHHHHHHHHHHHhcCCccchhHHhhhhHHHHHHHhhcccchhHHHHHHHHH
Q 004575 336 DVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFV 415 (744)
Q Consensus 336 ~pL~~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~yriK~~~l~~nll~kVl~Ll~~~~K~L~LaALRFl 415 (744)
.|+... .+ ..+.++.++.+++++|||+.||+|+||+|++++++++||+.|+++++++|+++|+||.
T Consensus 324 ~p~~~~-------~~-------s~~sa~~~~v~~~~l~fc~~~~s~si~n~~~~~d~~~~vlvl~~s~~~~l~~~a~~~~ 389 (458)
T KOG2175|consen 324 APLVGN-------TS-------SNQSAQNLSVILELLTFCVEHHSFSIKNYIVSSDLLNKVLVLMSSKHSFLVLGALRYL 389 (458)
T ss_pred Ccchhh-------cc-------cccccchhhhhhhhhhHHHHhcccccccHhhcchhhccceehhccccHHHHHHHHHhh
Confidence 543221 10 1257788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccChhHHHHHHHhhCcHHHHHHHHHHhCCCCcchhHHHHHHHHHHHhhchHHHHHHHHHHHHhhhc
Q 004575 416 RTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLV 485 (744)
Q Consensus 416 R~iI~lkDefy~ryiIk~nLf~PVl~~f~~ng~R~NLlnSA~LELfEfIr~eNik~Li~hlve~y~~~l~ 485 (744)
|.++.++|++|+||++++ ++|+++.|.+||.||||+|||+++||||||.||+|+|++|+|++||+.++
T Consensus 390 ~~~~~L~d~~~~~~ivk~--~~p~~~~~~~n~trynll~s~~l~l~efi~~e~~k~l~~~~v~~~~~~~~ 457 (458)
T KOG2175|consen 390 RKIPILEDEKYNKYIVKS--FKPVIDGFIENGTRYNLLNSAVLELFEFIRVEDIKPLLSYIVENFQNGLA 457 (458)
T ss_pred hccchhchHHHHHHHhhc--cccchhhHhhcCChhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhhcc
Confidence 999999999999999999 99999999999999999999999999999999999999999999999875
No 2
>PF04802 SMK-1: Component of IIS longevity pathway SMK-1; InterPro: IPR006887 This is a conserved region which characterises a number of eukaryotic proteins of unknown function.
Probab=100.00 E-value=3.1e-65 Score=511.05 Aligned_cols=191 Identities=52% Similarity=0.955 Sum_probs=187.3
Q ss_pred ccHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHhcCChhhHHhhhcchhHhHHhhhcccCCCCCCcc-chHHHhhhc
Q 004575 40 NDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQ-HHRNFLKEH 118 (744)
Q Consensus 40 ~~~~YI~KLl~LF~~cEdlenle~Lh~L~~IvK~IilLNd~~I~E~llsDe~i~~VVG~LEYDPe~p~~~-nHR~fL~~~ 118 (744)
.+++||+||+++|++|||++++++||+||+|||+||+||+++|+|+|++|++||+|||||||||++|+++ +||+||+++
T Consensus 2 ~~~~Yi~kL~~lF~~~E~~~~~~~L~~l~~Ivk~li~ln~~~i~e~llsde~i~~vvG~LEYDp~~~~~ka~hR~fL~~~ 81 (193)
T PF04802_consen 2 ENENYIKKLLDLFHQCEDLEDLEGLHLLFDIVKTLILLNDPEIFEILLSDENIMDVVGILEYDPEFPQPKANHREFLKEK 81 (193)
T ss_pred cchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCchHHHHHhchHHHHHHhhhhccCCcccccccchHHHHHhC
Confidence 3579999999999999999999999999999999999999999999999999999999999999999875 999999999
Q ss_pred CCceeeeecCChHHHHHHHhhhhcceeeehhcccccchhhHHhHHHHHHhhHHHHHHHhhcChHHHHHHHHHhCCCCCCH
Q 004575 119 VVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLE 198 (744)
Q Consensus 119 akFKEVIPI~d~~i~~KIHqTYRLqYLKDVVLaR~LDD~t~s~LnS~IffNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~ 198 (744)
++|||||||+|+++++||||||||||||||||||++||+++|+|||+|||||++||++||+|++||++||+++++++++.
T Consensus 82 ~~FkeVIpi~~~~l~~kIhqtyRlqYLkDvvL~r~lDd~~~s~L~s~I~~n~~~Iv~~l~~d~~fL~~Lf~~l~~~~~~~ 161 (193)
T PF04802_consen 82 AKFKEVIPIPDPELLSKIHQTYRLQYLKDVVLPRFLDDNTFSTLNSLIFFNQVEIVNMLQDDENFLEELFAILKDPSTSD 161 (193)
T ss_pred CCCceeeecCCHHHHHHHHHHHhHHHHHHHHcccccccHHHHHHHHHHHHhHHHHHHHHHhCHHHHHHHHHHhcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHhhhccChHhHHHHHHHH
Q 004575 199 ESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDL 230 (744)
Q Consensus 199 e~rrd~v~FL~E~c~~sK~LQ~~~r~~lfk~L 230 (744)
++|||+++||||||++||+||+++|.+||++|
T Consensus 162 ~~r~d~v~fL~e~c~~ak~lq~~~r~~f~~~L 193 (193)
T PF04802_consen 162 ERRRDGVKFLHEFCSLAKNLQPQSRSEFFKTL 193 (193)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchHHHHHhcC
Confidence 99999999999999999999999999999986
No 3
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.18 E-value=0.51 Score=54.78 Aligned_cols=200 Identities=12% Similarity=0.157 Sum_probs=142.0
Q ss_pred hcCcHHHHHHHHcCCChhhhHHHHHHHHHHHhcChHHHHHHHHhccCCCcHHHHHHHHhhcCCcchHHHHHHHHHHhcCC
Q 004575 232 NEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDS 311 (744)
Q Consensus 232 ~~GLl~vi~~~L~~~d~~ir~~atDILi~iie~dPslvR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk~LLDp 311 (744)
..++.+.+..+|.++++.+|..++-.|-.++.++...++ .+. +..++..++.. +.+.+.++......+|+.|...
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~-~~~---~~~l~~~i~~~-L~~~d~~Va~~A~~~L~~l~~~ 149 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQ-LLV---DNELLPLIIQC-LRDPDLSVAKAAIKALKKLASH 149 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHH-Hhc---CccHHHHHHHH-HcCCcHHHHHHHHHHHHHHhCC
Confidence 445668889999999999999999998888888866433 222 24466666654 4777888888899999988753
Q ss_pred CCCChhhHHHHHHHHHHH-HHHHHHHHHHhcCCccccccccCCCCCcCCCcHHHHHHHHHHHHHHHhcCCccchhHHhhh
Q 004575 312 YTLSGAQRDTIIEIFYEK-HLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLN 390 (744)
Q Consensus 312 ~~m~~~ekd~fL~~FY~~-~~~~L~~pL~~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~yriK~~~l~~ 390 (744)
.. -++..|+. ....|.+.+.. ..+.+--.++|+++.+..++.... .++...
T Consensus 150 ~~--------~~~~l~~~~~~~~L~~l~~~-------------------~~~~vR~Rv~el~v~i~~~S~~~~-~~~~~s 201 (503)
T PF10508_consen 150 PE--------GLEQLFDSNLLSKLKSLMSQ-------------------SSDIVRCRVYELLVEIASHSPEAA-EAVVNS 201 (503)
T ss_pred ch--------hHHHHhCcchHHHHHHHHhc-------------------cCHHHHHHHHHHHHHHHhcCHHHH-HHHHhc
Confidence 21 12222222 22233222111 022334467888888877776655 467778
Q ss_pred hHHHHHHHhhcccchhHHHHHHHHHHHHHccChhHHHHHHHhhCcHHHHHHHHHHh--CC-CCcchhHHHHHHHHHHHh
Q 004575 391 NVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVAN--GN-RYNLLNSAVLELFEYIRK 466 (744)
Q Consensus 391 nll~kVl~Ll~~~~K~L~LaALRFlR~iI~lkDefy~ryiIk~nLf~PVl~~f~~n--g~-R~NLlnSA~LELfEfIr~ 466 (744)
+++.+++..+...+-.+++.|+-.+..+...+. =..||.+.|++.-+.+.+... .+ -..++=...+.||..+-.
T Consensus 202 gll~~ll~eL~~dDiLvqlnalell~~La~~~~--g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~ 278 (503)
T PF10508_consen 202 GLLDLLLKELDSDDILVQLNALELLSELAETPH--GLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLAR 278 (503)
T ss_pred cHHHHHHHHhcCccHHHHHHHHHHHHHHHcChh--HHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHh
Confidence 899999999899999999999999999988443 379999999999999998643 22 345666777788888876
No 4
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=1.5 Score=48.68 Aligned_cols=191 Identities=17% Similarity=0.164 Sum_probs=122.8
Q ss_pred HhCCCCCCHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCChhhhHHHHHHHHHHHhcChHHH
Q 004575 190 RLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLL 269 (744)
Q Consensus 190 ~l~~~~~~~e~rrd~v~FL~E~c~~sK~LQ~~~r~~lfk~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~iie~dPslv 269 (744)
.+.++..+.++|-++..=|.++|. ...--.+|++.|.+..+--.+.+.+..+|..|+.++.+++..+|-.
T Consensus 89 ~~~~~s~~le~ke~ald~Le~lve---------~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~- 158 (342)
T KOG2160|consen 89 ILNSSSVDLEDKEDALDNLEELVE---------DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKS- 158 (342)
T ss_pred ccCcccCCHHHHHHHHHHHHHHHH---------hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHH-
Confidence 345566677777777777777775 1223346788876666666999999999999999999999999985
Q ss_pred HHHHHhccCCCcHHHHHHHHhhcCCcchHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Q 004575 270 RSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQ 349 (744)
Q Consensus 270 R~~i~~qe~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk~LLDp~~m~~~ekd~fL~~FY~~~~~~L~~pL~~~~p~~~~~~ 349 (744)
...+++- . .+.-|++++-.+...+.+.++.-|+..|+=.+. |-.++|+.. +...-|...+..+
T Consensus 159 Qe~v~E~--~-~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~---~g~~~fl~~---~G~~~L~~vl~~~-------- 221 (342)
T KOG2160|consen 159 QEQVIEL--G-ALSKLLKILSSDDPNTVRTKALFAISSLIRNNK---PGQDEFLKL---NGYQVLRDVLQSN-------- 221 (342)
T ss_pred HHHHHHc--c-cHHHHHHHHccCCCchHHHHHHHHHHHHHhcCc---HHHHHHHhc---CCHHHHHHHHHcC--------
Confidence 4444432 2 566666666667777778899999999885332 122334322 2333455544332
Q ss_pred ccCCCCCcCCCcHHHHHHHHHHHHHHHhcCCccchhHHhhhhHHHHHHH-hhcccchhHHHHHHHHHHHH
Q 004575 350 SASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLL-LTRRREKYLVVAAVRFVRTI 418 (744)
Q Consensus 350 ~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~yriK~~~l~~nll~kVl~-Ll~~~~K~L~LaALRFlR~i 418 (744)
.....+......|++..++.|.+.-. ++..-...+++. +..+-+--..-+|++..=+.
T Consensus 222 ---------~~~~~lkrK~~~Ll~~Ll~~~~s~~d--~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~ 280 (342)
T KOG2160|consen 222 ---------NTSVKLKRKALFLLSLLLQEDKSDED--IASSLGFQRVLENLISSLDFEVNEAALTALLSL 280 (342)
T ss_pred ---------CcchHHHHHHHHHHHHHHHhhhhhhh--HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHH
Confidence 12344556778899999999987644 444445555443 55555555556666544443
No 5
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.41 E-value=10 Score=47.28 Aligned_cols=133 Identities=23% Similarity=0.330 Sum_probs=74.0
Q ss_pred hhHHHHHHHHHHHHhcCCh--hhHHhhhcchhHhHHhhhcccCCCCCCccch-----HHHhhhcCCceeeeecCChHHHH
Q 004575 62 DGLHMIFKIIKGIILLNSP--QIFEKIFGDELMMDIIGSLEYDPDVPHVQHH-----RNFLKEHVVFKEAIPIRDPLVLS 134 (744)
Q Consensus 62 e~Lh~L~~IvK~IilLNd~--~I~E~llsDe~i~~VVG~LEYDPe~p~~~nH-----R~fL~~~akFKEVIPI~d~~i~~ 134 (744)
-.||++..|. .+|+=+.+ +.+|.|+.--.+ |+|..+..| =+++. +|- -+.++|+.+.+
T Consensus 437 GAL~~vgsl~-~~L~K~s~~~~~mE~flv~hVf----------P~f~s~~g~Lrarac~vl~---~~~-~~df~d~~~l~ 501 (1010)
T KOG1991|consen 437 GALRMVGSLA-SILLKKSPYKSQMEYFLVNHVF----------PEFQSPYGYLRARACWVLS---QFS-SIDFKDPNNLS 501 (1010)
T ss_pred hHHHHHHHHH-HHHccCCchHHHHHHHHHHHhh----------HhhcCchhHHHHHHHHHHH---HHH-hccCCChHHHH
Confidence 4688888887 77777777 778887765544 666654322 11222 121 13455666655
Q ss_pred HH-HhhhhcceeeehhcccccchhhHHhHHHHHHhhHHH---HHHHhhcChHHHHHHHHHhCCCCCCHHhHHHHHHHHHH
Q 004575 135 KI-HQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAY---VVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHE 210 (744)
Q Consensus 135 KI-HqTYRLqYLKDVVLaR~LDD~t~s~LnS~IffNqve---IV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E 210 (744)
++ |-|++. .+-|-.||--++ +++ .|.++|+.++.- +=.++ +..+++|+...+..+.+ ++..-++.
T Consensus 502 ~ale~t~~~-l~~d~~lPV~Ve-Aal-ALq~fI~~~~~~~e~~~~hv---p~~mq~lL~L~ne~End-----~Lt~vme~ 570 (1010)
T KOG1991|consen 502 EALELTHNC-LLNDNELPVRVE-AAL-ALQSFISNQEQADEKVSAHV---PPIMQELLKLSNEVEND-----DLTNVMEK 570 (1010)
T ss_pred HHHHHHHHH-hccCCcCchhhH-HHH-HHHHHHhcchhhhhhHhhhh---hHHHHHHHHHHHhcchh-----HHHHHHHH
Confidence 54 444443 333888883333 333 356677666522 22233 46788999988765544 23444444
Q ss_pred H-HHhhhccCh
Q 004575 211 F-CGLSKSLQM 220 (744)
Q Consensus 211 ~-c~~sK~LQ~ 220 (744)
+ |.++.-++|
T Consensus 571 iV~~fseElsP 581 (1010)
T KOG1991|consen 571 IVCKFSEELSP 581 (1010)
T ss_pred HHHHHHHhhch
Confidence 4 345555554
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.32 E-value=6.3 Score=46.18 Aligned_cols=242 Identities=17% Similarity=0.169 Sum_probs=151.3
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCChhhhHHHHHHHHHHH
Q 004575 183 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 262 (744)
Q Consensus 183 FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~~sK~LQ~~~r~~lfk~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~ii 262 (744)
-+..|...+..+.. ....|.+.--|..+|.- |+=+|+-. .-..+|+++...+.+.|..+..-++=.+.++.
T Consensus 195 ~l~pLl~~l~~~~~-~~~lRn~tW~LsNlcrg-k~P~P~~~-------~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 195 ALDPLLRLLNKSDK-LSMLRNATWTLSNLCRG-KNPSPPFD-------VVAPILPALLRLLHSTDEEVLTDACWALSYLT 265 (514)
T ss_pred chHHHHHHhccccc-hHHHHHHHHHHHHHHcC-CCCCCcHH-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 35555555554332 34566677777777763 33222211 11358899999999999999998888999999
Q ss_pred hcChHHHHHHHHhccCCCcHHHHHHHHhhcCCcchHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 004575 263 NQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASC 342 (744)
Q Consensus 263 e~dPslvR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk~LLDp~~m~~~ekd~fL~~FY~~~~~~L~~pL~~~~ 342 (744)
++.+..++-.+. .-..-.|+..|....+. .+ .-|||++-.--+-+..+....++. ..++.|...+ ...
T Consensus 266 dg~ne~iq~vi~----~gvv~~LV~lL~~~~~~---v~-~PaLRaiGNIvtG~d~QTq~vi~~---~~L~~l~~ll-~~s 333 (514)
T KOG0166|consen 266 DGSNEKIQMVID----AGVVPRLVDLLGHSSPK---VV-TPALRAIGNIVTGSDEQTQVVINS---GALPVLSNLL-SSS 333 (514)
T ss_pred cCChHHHHHHHH----ccchHHHHHHHcCCCcc---cc-cHHHhhccceeeccHHHHHHHHhc---ChHHHHHHHh-ccC
Confidence 999987655432 22334455544343321 11 346776643211111122222221 1122222222 111
Q ss_pred CccccccccCCCCCcCCCcHHHHHHHHHHHHHHHhcCCccchhHHhhhhHHHHHHHhhcccchhHHHHHHHHHHHHHccC
Q 004575 343 PQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRH 422 (744)
Q Consensus 343 p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~yriK~~~l~~nll~kVl~Ll~~~~K~L~LaALRFlR~iI~lk 422 (744)
| +..+-.-.|=.++.++..-..++ ..++.-+++..++.++...+.-++--|.--+-++..-.
T Consensus 334 ~-----------------~~~ikkEAcW~iSNItAG~~~qi-qaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g 395 (514)
T KOG0166|consen 334 P-----------------KESIKKEACWTISNITAGNQEQI-QAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSG 395 (514)
T ss_pred c-----------------chhHHHHHHHHHHHhhcCCHHHH-HHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccC
Confidence 1 11111223445555555444444 47888999999999999999889999999999999999
Q ss_pred hhHHHHHHHhhCcHHHHHHHHHHhCCCCcchhHHHHHHHHHHHh
Q 004575 423 DEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK 466 (744)
Q Consensus 423 Defy~ryiIk~nLf~PVl~~f~~ng~R~NLlnSA~LELfEfIr~ 466 (744)
+.--.+||++.++++|++++|..--.+ +=++||+=++.|.+
T Consensus 396 ~~~qi~yLv~~giI~plcdlL~~~D~~---ii~v~Ld~l~nil~ 436 (514)
T KOG0166|consen 396 TPEQIKYLVEQGIIKPLCDLLTCPDVK---IILVALDGLENILK 436 (514)
T ss_pred CHHHHHHHHHcCCchhhhhcccCCChH---HHHHHHHHHHHHHH
Confidence 999999999999999999999433332 37899999999976
No 7
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=92.87 E-value=6.4 Score=44.78 Aligned_cols=104 Identities=17% Similarity=0.302 Sum_probs=63.5
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCChhhhHHHHHHHHHHHh
Q 004575 184 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 263 (744)
Q Consensus 184 L~eLF~~l~~~~~~~e~rrd~v~FL~E~c~~sK~LQ~~~r~~lfk~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~iie 263 (744)
+..+...+.+++ ..-|+.++.-+..++.... .++..++++.+...|.++|..++.+|+-.+..+ .
T Consensus 116 ~~~v~~ll~~~~--~~VRk~A~~~l~~i~~~~p------------~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~ 180 (526)
T PF01602_consen 116 IPDVIKLLSDPS--PYVRKKAALALLKIYRKDP------------DLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-K 180 (526)
T ss_dssp HHHHHHHHHSSS--HHHHHHHHHHHHHHHHHCH------------CCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHhcCCc--hHHHHHHHHHHHHHhccCH------------HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-c
Confidence 344555555543 3567777777777766432 333333678888999999999999999888877 6
Q ss_pred cChHHHHHHHHhccCCCcHHHHHHHHhhcCCcchHHHHHHHHHHh
Q 004575 264 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL 308 (744)
Q Consensus 264 ~dPslvR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk~L 308 (744)
++|...-..+. .++..|++ ++.+.++-++..++.+|+.+
T Consensus 181 ~~~~~~~~~~~-----~~~~~L~~-~l~~~~~~~q~~il~~l~~~ 219 (526)
T PF01602_consen 181 CNDDSYKSLIP-----KLIRILCQ-LLSDPDPWLQIKILRLLRRY 219 (526)
T ss_dssp CTHHHHTTHHH-----HHHHHHHH-HHTCCSHHHHHHHHHHHTTS
T ss_pred cCcchhhhhHH-----HHHHHhhh-cccccchHHHHHHHHHHHhc
Confidence 66653211111 13344443 23667776676666666654
No 8
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=92.85 E-value=23 Score=41.26 Aligned_cols=289 Identities=17% Similarity=0.248 Sum_probs=164.0
Q ss_pred HHHhhHHHHHHHhhcChHHHHHHHHHhCCCCCCHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHc
Q 004575 165 IIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQ 244 (744)
Q Consensus 165 ~IffNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~~sK~LQ~~~r~~lfk~Lv~~GLl~vi~~~L~ 244 (744)
++..+..+.+.+|+..++|+..++.-+..+.. +-||-.++++=+ +..+..+..-|.+.+|++-+-..|.
T Consensus 4 Ll~~k~~e~l~Fik~~~~~v~~llkHI~~~~I--------mDlLLklIs~d~---~~~~~~ilewL~~q~LI~~Li~~L~ 72 (475)
T PF04499_consen 4 LLDRKTEEMLEFIKSQPNFVDNLLKHIDTPAI--------MDLLLKLISTDK---PESPTGILEWLAEQNLIPRLIDLLS 72 (475)
T ss_pred hhhcCHHHHHHHHHhCccHHHHHHHhcCCcHH--------HHHHHHHHccCc---ccchHHHHHHHHHhCHHHHHHHHhC
Confidence 45667788999999999999999999976543 556666666433 4567778888889999988888886
Q ss_pred -CCChhhhHHHHHHHHHHHhcChH-------------HHHHHHHhccCCCcHHHHHHHHhhcCCcchHHHHHHHHHHhcC
Q 004575 245 -SQDKKLVLTGTDILILFLNQDPN-------------LLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLD 310 (744)
Q Consensus 245 -~~d~~ir~~atDILi~iie~dPs-------------lvR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk~LLD 310 (744)
..+..+...|+|+|..||....+ ++|+ +.+ ...+..|++.|+.+.+..-....+.++-.||-
T Consensus 73 p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~-L~S---~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIR 148 (475)
T PF04499_consen 73 PSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQ-LVS---EETVEKLLDIMLNSQGGSSLVNGVSILIELIR 148 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHH-HhC---hHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 44566788899999888765432 2333 222 23667777888864333223444445555552
Q ss_pred CCC--------CC---h--hhHH-----HHHHHHHHHHHHHHHHHHHhcCCccc-cccccCC-CCCcCCCcHHHHHHHHH
Q 004575 311 SYT--------LS---G--AQRD-----TIIEIFYEKHLGQLIDVITASCPQEG-IAQSASS-GGRVESTKPEILSNICE 370 (744)
Q Consensus 311 p~~--------m~---~--~ekd-----~fL~~FY~~~~~~L~~pL~~~~p~~~-~~~~~~~-~~~v~~~~~~ll~~l~E 370 (744)
-.+ +. . .+++ ..+..|- .+++.|.+.|..+ |... +..+.+. ........ -+|||
T Consensus 149 knnsdy~~~~~~~~~~~~p~~rdpi~l~~lL~~~~-~~l~~f~~lL~~~-~~~~~l~Tt~G~l~~PLG~~R----lkI~E 222 (475)
T PF04499_consen 149 KNNSDYDEQLYTTIESHPPSERDPIYLGTLLKAFS-PRLPDFHKLLLNP-PKKPPLETTFGVLIPPLGFER----LKICE 222 (475)
T ss_pred hcccccchhhccccccCCCCccchhhHHHHHHHHH-HhHHHHHHHHhch-hhccccccCCCCCCCCcchHH----HHHHH
Confidence 211 00 0 1222 2455554 3456677766554 2111 1111110 00011111 25677
Q ss_pred HHHHHHhcCCcc------chhHHhhhhHHH-HHHHh----hcc----c----c-----h--------hHHH---------
Q 004575 371 LLCFCVLHHPYR------IKCNFLLNNVVD-KVLLL----TRR----R----E-----K--------YLVV--------- 409 (744)
Q Consensus 371 LL~Fcv~~H~yr------iK~~~l~~nll~-kVl~L----l~~----~----~-----K--------~L~L--------- 409 (744)
|++-...-...- ....+...+..+ +.+.- ... . + . -+..
T Consensus 223 LiAeLLhcsNm~LlN~~~~~~~~~~rd~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (475)
T PF04499_consen 223 LIAELLHCSNMSLLNEPKGEEIVYERDGERERLLEQLQDALNDLEIDDEDIDDNSMDDESDSSEDSRELEVSNDSSDSEE 302 (475)
T ss_pred HHHHHHhCCCccccCCccccchhcCcHHHHHHHHHHHHhhhhcccCCccccccccccccccCcccccccccccccccccc
Confidence 776554433221 111111112111 11110 000 0 0 0 0000
Q ss_pred -----------------------HHHHHHHHHHccChhHHHHHHHhhCcHHHHHHHHHHhCCCCcchhHHHHHHHHHHH-
Q 004575 410 -----------------------AAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIR- 465 (744)
Q Consensus 410 -----------------------aALRFlR~iI~lkDefy~ryiIk~nLf~PVl~~f~~ng~R~NLlnSA~LELfEfIr- 465 (744)
.++|- .-+|| +.+..-|+..++|.-++++|..- +=+|.|...|-+++-.|-
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pvvG---d~~k~~L~~~~il~~iLdLFfky-pwNNFLH~~V~diIqqiln 377 (475)
T PF04499_consen 303 EDESDEDSEDEEEEESSDSEETEEKLRS-NPVVG---DYLKIELIELGILPTILDLFFKY-PWNNFLHNVVEDIIQQILN 377 (475)
T ss_pred ccCCccccccccccccccccccchhccC-CCCcH---HHHHHHHHHCCcHHHHHHHHhcC-cchhHHHHHHHHHHHHHhC
Confidence 00000 00122 66888999999999999999876 667999999999999998
Q ss_pred ----hhchHHHHHHHHHH
Q 004575 466 ----KENLKSLVKYIVDS 479 (744)
Q Consensus 466 ----~eNik~Li~hlve~ 479 (744)
...-+.|+.||.+.
T Consensus 378 ~~~~~~~n~~L~~~Lf~~ 395 (475)
T PF04499_consen 378 GPMDESYNSFLVKHLFED 395 (475)
T ss_pred CCCcccccHHHHHHHHhh
Confidence 45557888998853
No 9
>KOG2175 consensus Protein predicted to be involved in carbohydrate metabolism [Carbohydrate transport and metabolism]
Probab=92.25 E-value=1.1 Score=51.49 Aligned_cols=180 Identities=14% Similarity=0.141 Sum_probs=112.8
Q ss_pred HhhcCCcchHHHHHHHHHH--hcCCCCC--------Ch--------hhHHHHHHHHHHHH--HHHHHHHHHhcCCccccc
Q 004575 289 MITDFGEDMHCQFLEILRS--LLDSYTL--------SG--------AQRDTIIEIFYEKH--LGQLIDVITASCPQEGIA 348 (744)
Q Consensus 289 ll~D~~~gL~~Ql~eaLk~--LLDp~~m--------~~--------~ekd~fL~~FY~~~--~~~L~~pL~~~~p~~~~~ 348 (744)
.+.-.+|++..++-+..|. |+|.--. .+ ..+..+++++++.. +-.||+.+..+.
T Consensus 101 ~ipi~dp~ll~kIhqt~r~q~l~d~vl~~~~~~~~a~~~~l~s~i~~~~~~ii~~lqed~~~l~eLf~~l~~~~------ 174 (458)
T KOG2175|consen 101 VIPISDPELLAKIHQTFRVQYLKDVVLPEPGVFDEATGNTLNSFIFFNKVNIVSLLQEDEKFLIELFARLRSES------ 174 (458)
T ss_pred eeecCCHHHHHHHHHHHHHHHhheeeecCCcchhcchhHHHHHHHHHhhhhhhhhhhcCchHHHHHHHHhcCCc------
Confidence 3445778888888887774 3343111 11 12445666777662 333444332210
Q ss_pred cccCCCCCcCCCcHHHHHHHHHHHHHHHhcCCccchhHHhhhh---HHHHHHH-hhcccchhHHHHHHHHHHHHHccChh
Q 004575 349 QSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNN---VVDKVLL-LTRRREKYLVVAAVRFVRTILSRHDE 424 (744)
Q Consensus 349 ~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~yriK~~~l~~n---ll~kVl~-Ll~~~~K~L~LaALRFlR~iI~lkDe 424 (744)
...++-..+.|+|+..|.+.+.|.+..+..|+..- .+..++. .+...++-++.+|.+.+.+++..+ -
T Consensus 175 --------t~~qkr~~li~~lke~c~~s~~L~~~~~~~~fkTlv~~~i~~~le~~~~~~d~~~r~~~~di~~~~ve~~-~ 245 (458)
T KOG2175|consen 175 --------TDDQKRDDLVHFLKEFCSFSKALQPQSRDAFFKTLVNKGILDALEYVLKMPDTQVRSAATDILARLVEMS-P 245 (458)
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHHHhcC-H
Confidence 01245567889999999999999999887644322 2333333 244558889999999998888755 2
Q ss_pred HHHHHHHhhCcHHHHHHHHHHhCCCCcchhHHHHHHHHHHHhhchHHHHHHHHHHHHhhhcccc
Q 004575 425 HLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFE 488 (744)
Q Consensus 425 fy~ryiIk~nLf~PVl~~f~~ng~R~NLlnSA~LELfEfIr~eNik~Li~hlve~y~~~l~~i~ 488 (744)
-..|-.+...-+.|- .+..--|+++|+.++.||+-+.+..+.+..+.--.+.+.+....
T Consensus 246 ~~i~~~~~~~~~~~~-----~~~~~~nl~~s~~l~d~d~~~~~~s~~~~i~~tll~~~~~~~~~ 304 (458)
T KOG2175|consen 246 SMIRSFTLGEALDPD-----DEKLLLNLAISHMLEDFDPELSGASQLMLILSTLLDPENMLTLA 304 (458)
T ss_pred HHHHHHHHHhhcCch-----hhHHHHHHHHHhhccccCccccchHHHHHHHHHhhCccccCCcc
Confidence 222222222222221 23345689999999999999998888888777777777776654
No 10
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=91.00 E-value=7 Score=34.50 Aligned_cols=111 Identities=16% Similarity=0.133 Sum_probs=77.9
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCChhhhHHHHHHHHHHH
Q 004575 183 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 262 (744)
Q Consensus 183 FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~~sK~LQ~~~r~~lfk~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~ii 262 (744)
.++.|...+.+++ ..-|..++.-|..+|.-+ ......+++.|.++.+...|.+++..++..++-.|..+.
T Consensus 8 ~i~~l~~~l~~~~--~~~~~~a~~~l~~l~~~~--------~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~ 77 (120)
T cd00020 8 GLPALVSLLSSSD--ENVQREAAWALSNLSAGN--------NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLA 77 (120)
T ss_pred ChHHHHHHHHcCC--HHHHHHHHHHHHHHhcCC--------HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 4556666666554 567788888777777632 223445567899999999999999999999999999999
Q ss_pred hcChHHHHHHHHhccCCCcHHHHHHHHhhcCCcchHHHHHHHHHHh
Q 004575 263 NQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL 308 (744)
Q Consensus 263 e~dPslvR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk~L 308 (744)
...+.. +..+.+ .-++..|++.| .+.+..++.+...+|..|
T Consensus 78 ~~~~~~-~~~~~~---~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 78 AGPEDN-KLIVLE---AGGVPKLVNLL-DSSNEDIQKNATGALSNL 118 (120)
T ss_pred cCcHHH-HHHHHH---CCChHHHHHHH-hcCCHHHHHHHHHHHHHh
Confidence 887753 333332 23677777654 344566777777777665
No 11
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=90.97 E-value=32 Score=38.94 Aligned_cols=239 Identities=19% Similarity=0.293 Sum_probs=134.5
Q ss_pred cchhhHHhHHHHHHhhHHHHHHHhhcC--hHHHHHHHHHhC----------C-CCCCHHhHHHHHHHHHHHHHhhhccCh
Q 004575 154 LDEATVANLNSIIHGNNAYVVSLLKDD--STFIQELFARLR----------S-PTTLEESKKNLVHFLHEFCGLSKSLQM 220 (744)
Q Consensus 154 LDD~t~s~LnS~IffNqveIV~~Lq~d--~~FL~eLF~~l~----------~-~~~~~e~rrd~v~FL~E~c~~sK~LQ~ 220 (744)
.|+..+..+..++.+ ||.+|-.+ ..++.++++.|- . .......++-++.|-.-+|++-|+...
T Consensus 109 ~~~~~L~~~~~l~~~----iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~ 184 (415)
T PF12460_consen 109 LDDRVLELLSRLINL----IVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSL 184 (415)
T ss_pred cchHHHHHHHHHHHH----HHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCc
Confidence 566677777666654 55555422 357888888775 1 111124567778888888898888775
Q ss_pred HhHHHHHHHHHhcCcHHHHHHHHcCCChhhhHHHHHHHHHHHhc--ChHHHHHHHH------------------------
Q 004575 221 VQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ--DPNLLRSYVV------------------------ 274 (744)
Q Consensus 221 ~~r~~lfk~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~iie~--dPslvR~~i~------------------------ 274 (744)
++-..+.+. .+..+++..+...|..+..++..+++- +.+.+..++.
T Consensus 185 ~~~~~ll~~--------l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~W 256 (415)
T PF12460_consen 185 PDLEELLQS--------LLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIW 256 (415)
T ss_pred cCHHHHHHH--------HHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHH
Confidence 532233333 445566677777777777777777776 2222222211
Q ss_pred -------hcc--CCCcHHHHHHHHhhcCCcchHHHHHHHHHHhcCC-CCCChh-----hHHHHHHHHHHHHHHHHHHHHH
Q 004575 275 -------RQE--GIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDS-YTLSGA-----QRDTIIEIFYEKHLGQLIDVIT 339 (744)
Q Consensus 275 -------~qe--~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk~LLDp-~~m~~~-----ekd~fL~~FY~~~~~~L~~pL~ 339 (744)
|.. +..+++.|++. +.+ +.+...+..++.+|+.. +..... -|--+=+-||...+|.|++...
T Consensus 257 i~KaLv~R~~~~~~~~~~~L~~l-L~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~ 333 (415)
T PF12460_consen 257 ITKALVMRGHPLATELLDKLLEL-LSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFK 333 (415)
T ss_pred HHHHHHHcCCchHHHHHHHHHHH-hCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHh
Confidence 100 11233334432 223 33456677777777755 222111 1223345566666777766543
Q ss_pred hcCCccccccccCCCCCcCCCcHHHHHHHHHHHHHHHhcCCccchhHHhh---hhHHHHHHHhhcccchhHHHHHHHHHH
Q 004575 340 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLL---NNVVDKVLLLTRRREKYLVVAAVRFVR 416 (744)
Q Consensus 340 ~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~yriK~~~l~---~nll~kVl~Ll~~~~K~L~LaALRFlR 416 (744)
+.. +..+. +.+--|++.+++=+. -++. ..++.=+++-+...+.-++.++|..+.
T Consensus 334 ~~~---------------~~~k~----~yL~ALs~ll~~vP~----~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~ 390 (415)
T PF12460_consen 334 EAD---------------DEIKS----NYLTALSHLLKNVPK----SVLLPELPTLLPLLLQSLSLPDADVLLSSLETLK 390 (415)
T ss_pred hcC---------------hhhHH----HHHHHHHHHHhhCCH----HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 210 00122 223456666664442 2333 245555666678888889999999999
Q ss_pred HHHccChhHHHHHH
Q 004575 417 TILSRHDEHLINHF 430 (744)
Q Consensus 417 ~iI~lkDefy~ryi 430 (744)
.++.-+.+....|+
T Consensus 391 ~~l~~~~~~i~~hl 404 (415)
T PF12460_consen 391 MILEEAPELISEHL 404 (415)
T ss_pred HHHHcCHHHHHHHH
Confidence 99987766665554
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=90.84 E-value=2.8 Score=47.64 Aligned_cols=227 Identities=13% Similarity=0.173 Sum_probs=128.9
Q ss_pred cHHHHHHHHcCCChhhhHHHHHHHHHHHhcChHHHHHHHHhccCCCcHHHHHHHHhhcCCcchHHHHHHHHHHh-cCCCC
Q 004575 235 IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL-LDSYT 313 (744)
Q Consensus 235 Ll~vi~~~L~~~d~~ir~~atDILi~iie~dPslvR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk~L-LDp~~ 313 (744)
+++.+...+.++++.+|..|+--+..+...+|+.++.. ++..+.+ ++.|.++++......++..+ ..+..
T Consensus 115 l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~--------~~~~l~~-lL~d~~~~V~~~a~~~l~~i~~~~~~ 185 (526)
T PF01602_consen 115 LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE--------LIPKLKQ-LLSDKDPSVVSAALSLLSEIKCNDDS 185 (526)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG--------HHHHHHH-HTTHSSHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH--------HHHHHhh-hccCCcchhHHHHHHHHHHHccCcch
Confidence 45677788899999999999999999999999977652 2333443 45888888887777777766 11110
Q ss_pred CChhhHHHHHHHHHHHH-------HHHHHHH----HHhcCCccccccccCCCCCcCCCc---HHHHHHH-----------
Q 004575 314 LSGAQRDTIIEIFYEKH-------LGQLIDV----ITASCPQEGIAQSASSGGRVESTK---PEILSNI----------- 368 (744)
Q Consensus 314 m~~~ekd~fL~~FY~~~-------~~~L~~p----L~~~~p~~~~~~~~~~~~~v~~~~---~~ll~~l----------- 368 (744)
. -.++..+|... .+|+.-. |...++. .... ..++..+
T Consensus 186 ----~-~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~-------------~~~~~~~~~~i~~l~~~l~s~~~~V 247 (526)
T PF01602_consen 186 ----Y-KSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPM-------------EPEDADKNRIIEPLLNLLQSSSPSV 247 (526)
T ss_dssp ----H-TTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSS-------------SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----h-hhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccC-------------ChhhhhHHHHHHHHHHHhhccccHH
Confidence 0 03444444332 1332221 1111110 0001 1122222
Q ss_pred -HHHHHHHHhcCCccchhHHhhhhHHHHHHHhhcccchhHHHHHHHHHHHHHccChhHHHHHHHhhCcHHHHHHHHHHhC
Q 004575 369 -CELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANG 447 (744)
Q Consensus 369 -~ELL~Fcv~~H~yriK~~~l~~nll~kVl~Ll~~~~K~L~LaALRFlR~iI~lkDefy~ryiIk~nLf~PVl~~f~~ng 447 (744)
.|....+..-.+. .-+...++..+..++.+++.-++..|++.+..++... ...++.+-+..|.-..
T Consensus 248 ~~e~~~~i~~l~~~----~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~---------~~~v~~~~~~~~~l~~ 314 (526)
T PF01602_consen 248 VYEAIRLIIKLSPS----PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN---------PPAVFNQSLILFFLLY 314 (526)
T ss_dssp HHHHHHHHHHHSSS----HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC---------HHHHGTHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcc----hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc---------chhhhhhhhhhheecC
Confidence 2222222221111 1144556666777888888889999999998888765 2223344444444333
Q ss_pred CCCcchhHHHHHHHHHHH-hhchHHHHHHHHHHHHhh---hccccchhhHHHHHHhhh
Q 004575 448 NRYNLLNSAVLELFEYIR-KENLKSLVKYIVDSFWNQ---LVNFEYLASLHSFKVKYE 501 (744)
Q Consensus 448 ~R~NLlnSA~LELfEfIr-~eNik~Li~hlve~y~~~---l~~i~yv~tf~~Lk~rYe 501 (744)
+.+.-+-...|+++-.+- .+|++.++..+.+--.+. --....+.+...+-.+|.
T Consensus 315 ~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~ 372 (526)
T PF01602_consen 315 DDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFP 372 (526)
T ss_dssp SSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHG
T ss_pred CCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccC
Confidence 455567777777766654 479999888888543221 112234566666777774
No 13
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.74 E-value=14 Score=43.47 Aligned_cols=201 Identities=17% Similarity=0.181 Sum_probs=132.5
Q ss_pred HHHHHHhcCcHHHHHHHHcCCChhhhHHHHHHHHHHHhcChHHHHHHHHhccCCCcHHHHHHHHhhcCCcchHHHHHHHH
Q 004575 226 LFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEIL 305 (744)
Q Consensus 226 lfk~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~iie~dPslvR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~~Ql~eaL 305 (744)
-.+..++.|-.+++-..+.+++..++.-|+=.|-.|+-+.|. .|+|++... .+.-|...+..+....+.-+++=+|
T Consensus 144 ~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~-~Rd~vl~~g---~l~pLl~~l~~~~~~~~lRn~tW~L 219 (514)
T KOG0166|consen 144 QTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD-CRDYVLSCG---ALDPLLRLLNKSDKLSMLRNATWTL 219 (514)
T ss_pred hccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH-HHHHHHhhc---chHHHHHHhccccchHHHHHHHHHH
Confidence 345567899999999999999999998888888888877776 599988633 2222232222332234556666677
Q ss_pred HHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCcCCCcHHHHHHHHHHHHHHHhcCCccchh
Q 004575 306 RSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKC 385 (744)
Q Consensus 306 k~LLDp~~m~~~ekd~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~yriK~ 385 (744)
.-|.-..+.. |.=+.. ...++.|...|. ....+++...|=.|+|.+-+-.-.|.
T Consensus 220 sNlcrgk~P~-P~~~~v-----~~iLp~L~~ll~-------------------~~D~~Vl~Da~WAlsyLsdg~ne~iq- 273 (514)
T KOG0166|consen 220 SNLCRGKNPS-PPFDVV-----APILPALLRLLH-------------------STDEEVLTDACWALSYLTDGSNEKIQ- 273 (514)
T ss_pred HHHHcCCCCC-CcHHHH-----HHHHHHHHHHHh-------------------cCCHHHHHHHHHHHHHHhcCChHHHH-
Confidence 7666444321 111111 122333333221 23567778888888888877777765
Q ss_pred HHhhhhHHHHHHHhhcccchhHHHHHHHHHHHHHccChhHHHHHHHhhCcHHHHHHHHHHhCCCCcchhHHHH
Q 004575 386 NFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVL 458 (744)
Q Consensus 386 ~~l~~nll~kVl~Ll~~~~K~L~LaALRFlR~iI~lkDefy~ryiIk~nLf~PVl~~f~~ng~R~NLlnSA~L 458 (744)
.++.-.+..|+..|+....--+++.|||.+=+| ...++.-..-+|..+++.-+..++ .+.+..++--.||-
T Consensus 274 ~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNI-vtG~d~QTq~vi~~~~L~~l~~ll-~~s~~~~ikkEAcW 344 (514)
T KOG0166|consen 274 MVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNI-VTGSDEQTQVVINSGALPVLSNLL-SSSPKESIKKEACW 344 (514)
T ss_pred HHHHccchHHHHHHHcCCCcccccHHHhhccce-eeccHHHHHHHHhcChHHHHHHHh-ccCcchhHHHHHHH
Confidence 577888999999998888877889999999984 457777788888888875555444 44455554444554
No 14
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=90.27 E-value=43 Score=39.16 Aligned_cols=268 Identities=15% Similarity=0.182 Sum_probs=132.8
Q ss_pred cchHHHhhhcCCceeeeecCChHHHHH-HHhhhhcceeeehhcccccchhhHHhHHHHHHhhHHHH-------HHHhhcC
Q 004575 109 QHHRNFLKEHVVFKEAIPIRDPLVLSK-IHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYV-------VSLLKDD 180 (744)
Q Consensus 109 ~nHR~fL~~~akFKEVIPI~d~~i~~K-IHqTYRLqYLKDVVLaR~LDD~t~s~LnS~IffNqveI-------V~~Lq~d 180 (744)
.+|+.+|..--. + +++.++.. +.+.-|+-.-.+.+..-+.+...+..+-..+-.-..++ +..|-..
T Consensus 76 ~~~~~~L~~gL~-h-----~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~ 149 (503)
T PF10508_consen 76 PQYQPFLQRGLT-H-----PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASH 149 (503)
T ss_pred HHHHHHHHHHhc-C-----CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC
Confidence 477777765321 1 35566555 33333433334444444555556555555554333332 2222222
Q ss_pred hHHHHH---------HHHHhCCCCCCHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCChhhh
Q 004575 181 STFIQE---------LFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLV 251 (744)
Q Consensus 181 ~~FL~e---------LF~~l~~~~~~~e~rrd~v~FL~E~c~~sK~LQ~~~r~~lfk~Lv~~GLl~vi~~~L~~~d~~ir 251 (744)
+.-+.. |-..+..+ +..-|..+..++=++++.+ ...+....+.|+|+.+-..|.++|.-++
T Consensus 150 ~~~~~~l~~~~~~~~L~~l~~~~--~~~vR~Rv~el~v~i~~~S--------~~~~~~~~~sgll~~ll~eL~~dDiLvq 219 (503)
T PF10508_consen 150 PEGLEQLFDSNLLSKLKSLMSQS--SDIVRCRVYELLVEIASHS--------PEAAEAVVNSGLLDLLLKELDSDDILVQ 219 (503)
T ss_pred chhHHHHhCcchHHHHHHHHhcc--CHHHHHHHHHHHHHHHhcC--------HHHHHHHHhccHHHHHHHHhcCccHHHH
Confidence 222332 33333221 2223434444444444332 3356777889999999999999999999
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHhccCCCcHHHHHHHHhhcC-Ccch-HHHHHHHHHHhcCCCCCChhhHHHHHHHHHHH
Q 004575 252 LTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDF-GEDM-HCQFLEILRSLLDSYTLSGAQRDTIIEIFYEK 329 (744)
Q Consensus 252 ~~atDILi~iie~dPslvR~~i~~qe~~~Ll~lLi~~ll~D~-~~gL-~~Ql~eaLk~LLDp~~m~~~ekd~fL~~FY~~ 329 (744)
..++|+|..+.. .+.. .+|+.++ -.+..|++.+.... ++.+ ...+...++..=.-..+ +-..++.. |..
T Consensus 220 lnalell~~La~-~~~g-~~yL~~~---gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~---~~~~v~~~-~p~ 290 (503)
T PF10508_consen 220 LNALELLSELAE-TPHG-LQYLEQQ---GIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV---SPQEVLEL-YPA 290 (503)
T ss_pred HHHHHHHHHHHc-ChhH-HHHHHhC---CHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc---ChHHHHHH-HHH
Confidence 999999999999 4443 6888763 35555555443321 1101 11122222211000000 11122221 333
Q ss_pred HHHHHHHHHHhcCCccccccccCCCCCcCCCcHHHHHHHHHHHHHHHhcCCccchhHHhhh------hHHHHHHHhhccc
Q 004575 330 HLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLN------NVVDKVLLLTRRR 403 (744)
Q Consensus 330 ~~~~L~~pL~~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~yriK~~~l~~------nll~kVl~Ll~~~ 403 (744)
.+..|++.+.+ .......-.+|-+.++. ++-.-|..++.+ +++.++.....+.
T Consensus 291 ~~~~l~~~~~s-------------------~d~~~~~~A~dtlg~ig--st~~G~~~L~~~~~~~~~~~l~~~~~~~~~~ 349 (503)
T PF10508_consen 291 FLERLFSMLES-------------------QDPTIREVAFDTLGQIG--STVEGKQLLLQKQGPAMKHVLKAIGDAIKSG 349 (503)
T ss_pred HHHHHHHHhCC-------------------CChhHHHHHHHHHHHHh--CCHHHHHHHHhhcchHHHHHHHHHHHHhcCC
Confidence 33444432211 12222333445554433 333444444222 2345555556666
Q ss_pred chhHHHHHHHHHHHHHccC
Q 004575 404 EKYLVVAAVRFVRTILSRH 422 (744)
Q Consensus 404 ~K~L~LaALRFlR~iI~lk 422 (744)
..-+++.||.++-.++...
T Consensus 350 ~~~lk~r~l~al~~il~~~ 368 (503)
T PF10508_consen 350 STELKLRALHALASILTSG 368 (503)
T ss_pred chHHHHHHHHHHHHHHhcC
Confidence 6679999999999997654
No 15
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=90.05 E-value=63 Score=44.11 Aligned_cols=216 Identities=13% Similarity=0.176 Sum_probs=132.4
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCChhhhHHHHHHHHHH
Q 004575 182 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 261 (744)
Q Consensus 182 ~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~~sK~LQ~~~r~~lfk~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~i 261 (744)
..++-|...|++++ .+-++.++..|.-+ ++.-+ .+| ...++.|.++.+-..|.+++..++.-|+-+|..+
T Consensus 446 ggIp~LV~LL~s~s--~~iQ~~A~~~L~nL---a~~nd-enr----~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NL 515 (2102)
T PLN03200 446 EGVQLLISLLGLSS--EQQQEYAVALLAIL---TDEVD-ESK----WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNL 515 (2102)
T ss_pred CcHHHHHHHHcCCC--HHHHHHHHHHHHHH---HcCCH-HHH----HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 35677777777543 34556666555433 32211 112 3567899999999999999999999888888888
Q ss_pred HhcChHHHHHHHHhccCCCcHHHHHHHHhhcCCcchHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhc
Q 004575 262 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITAS 341 (744)
Q Consensus 262 ie~dPslvR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk~LLDp~~m~~~ekd~fL~~FY~~~~~~L~~pL~~~ 341 (744)
.-++++ .|..+.+. | -+..|++.| .+.+...+.....+|..|+-... .+ .++.|+.-|...
T Consensus 516 a~~~~q-ir~iV~~a-G--AIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~~d-----~~---------~I~~Lv~LLlsd 576 (2102)
T PLN03200 516 CCHSED-IRACVESA-G--AVPALLWLL-KNGGPKGQEIAAKTLTKLVRTAD-----AA---------TISQLTALLLGD 576 (2102)
T ss_pred hCCcHH-HHHHHHHC-C--CHHHHHHHH-hCCCHHHHHHHHHHHHHHHhccc-----hh---------HHHHHHHHhcCC
Confidence 777665 46655432 2 333444433 34455567777777777754321 11 112233322111
Q ss_pred CCccccccccCCCCCcCCCcHHHHHHHHHHHHHHHh--cCCccchhHHhhhhHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 004575 342 CPQEGIAQSASSGGRVESTKPEILSNICELLCFCVL--HHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 419 (744)
Q Consensus 342 ~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~--~H~yriK~~~l~~nll~kVl~Ll~~~~K~L~LaALRFlR~iI 419 (744)
.+.+..+.++.|..++. ++.-..+.-...++.+..+..|+.+..+-.+-.|...+=++.
T Consensus 577 -------------------d~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~ 637 (2102)
T PLN03200 577 -------------------LPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIF 637 (2102)
T ss_pred -------------------ChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 12334445555544433 111111111234578899999999988888888888888888
Q ss_pred ccChhHHHHHHHhhCcHHHHHHHHHHh
Q 004575 420 SRHDEHLINHFVKNNLLKPIVDAFVAN 446 (744)
Q Consensus 420 ~lkDefy~ryiIk~nLf~PVl~~f~~n 446 (744)
.-+.+.. .-++..+.+.|++..+..+
T Consensus 638 a~~~d~~-~avv~agaIpPLV~LLss~ 663 (2102)
T PLN03200 638 SSRQDLC-ESLATDEIINPCIKLLTNN 663 (2102)
T ss_pred cCChHHH-HHHHHcCCHHHHHHHHhcC
Confidence 8665554 4488899999999888644
No 16
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=88.97 E-value=22 Score=38.61 Aligned_cols=254 Identities=17% Similarity=0.281 Sum_probs=124.3
Q ss_pred ccccchhhHHhHHHHHHhhHHHHHHHhhcCh-HH---HHHHHHHhCCCCCCHHhHHHHHHHHHHHHHhhhccChHhHHHH
Q 004575 151 ARVLDEATVANLNSIIHGNNAYVVSLLKDDS-TF---IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRL 226 (744)
Q Consensus 151 aR~LDD~t~s~LnS~IffNqveIV~~Lq~d~-~F---L~eLF~~l~~~~~~~e~rrd~v~FL~E~c~~sK~LQ~~~r~~l 226 (744)
++.+++..++.+..+=-.....=.+.+..+. .+ +-.|+... +...+-.+-++.++-++|.-.. .+..+
T Consensus 23 a~~is~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~---~~~~d~v~yvL~li~dll~~~~-----~~~~~ 94 (312)
T PF03224_consen 23 AGLISEEDLSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKL---SSNDDTVQYVLTLIDDLLSDDP-----SRVEL 94 (312)
T ss_dssp TTSS-HHHHHHHHHHHHHHH-------------------HHHHHH------HHHHHHHHHHHHHHHH-SS-----SSHHH
T ss_pred hCCCCHHHHHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHc---cCcHHHHHHHHHHHHHHHhcCH-----HHHHH
Confidence 4567777777766654333222222333333 22 22344444 2334455566667777776433 45556
Q ss_pred HHHHHhc---CcHHHHHHHHcCCChhhhHHHHHHHHHHHhcChHHHHHHHHhccCCCcHHHHHHHHhhcCCcchHHHHHH
Q 004575 227 FRDLMNE---GIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLE 303 (744)
Q Consensus 227 fk~Lv~~---GLl~vi~~~L~~~d~~ir~~atDILi~iie~dPslvR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~~Ql~e 303 (744)
|..+... ..+..+-..+.++|..+...+.=+|..++-+++..-.... ++.=..+++.|.+++ ...+.+++.-.+.
T Consensus 95 ~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l-~~~~~~~~~~av~ 172 (312)
T PF03224_consen 95 FLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQL-SSSDSELQYIAVQ 172 (312)
T ss_dssp HHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT--HHHH---HHHHH
T ss_pred HHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhh-cCCCcchHHHHHH
Confidence 6666642 2455555588899999999999999999999886433311 000023666666532 2223334444556
Q ss_pred HHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCcCCCcHHHHHHHHHHHHHHHhcCCcc-
Q 004575 304 ILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYR- 382 (744)
Q Consensus 304 aLk~LLDp~~m~~~ekd~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~yr- 382 (744)
+|..||-.. ..|..|.+ .+.++.|++.|..... . .+....+++.+ ++||+-.=+|-
T Consensus 173 ~L~~LL~~~----~~R~~f~~---~~~v~~l~~iL~~~~~-----~-------~~~~~~Ql~Y~----~ll~lWlLSF~~ 229 (312)
T PF03224_consen 173 CLQNLLRSK----EYRQVFWK---SNGVSPLFDILRKQAT-----N-------SNSSGIQLQYQ----ALLCLWLLSFEP 229 (312)
T ss_dssp HHHHHHTSH----HHHHHHHT---HHHHHHHHHHHH---------------------HHHHHHH----HHHHHHHHTTSH
T ss_pred HHHHHhCcc----hhHHHHHh---cCcHHHHHHHHHhhcc-----c-------CCCCchhHHHH----HHHHHHHHhcCH
Confidence 666666321 23444444 4456666665421100 0 01224444322 23444333333
Q ss_pred -chhHHhhhhHHHHHHHhh--cccchhHHHHHHHHHHHHHccChhHHHHHHHhhCcHHH
Q 004575 383 -IKCNFLLNNVVDKVLLLT--RRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKP 438 (744)
Q Consensus 383 -iK~~~l~~nll~kVl~Ll--~~~~K~L~LaALRFlR~iI~lkDefy~ryiIk~nLf~P 438 (744)
+-..+..++++..++.++ ..|+|..++ |+-.+|+++....+.+..-|+.++++.-
T Consensus 230 ~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv-~la~l~Nl~~~~~~~~~~~mv~~~~l~~ 287 (312)
T PF03224_consen 230 EIAEELNKKYLIPLLADILKDSIKEKVVRV-SLAILRNLLSKAPKSNIELMVLCGLLKT 287 (312)
T ss_dssp HHHHHHHTTSHHHHHHHHHHH--SHHHHHH-HHHHHHHTTSSSSTTHHHHHHHH-HHHH
T ss_pred HHHHHHhccchHHHHHHHHHhcccchHHHH-HHHHHHHHHhccHHHHHHHHHHccHHHH
Confidence 222344555666666553 368999887 5778899998877777777777776543
No 17
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.20 E-value=74 Score=37.09 Aligned_cols=199 Identities=17% Similarity=0.222 Sum_probs=117.6
Q ss_pred HHHHHHHHhcCcHHHHHHHHcCCChhhh------HHHHHHHHHHHhcChHHHHHHHHhccCCCcHHHHHHHHhhc-CCcc
Q 004575 224 LRLFRDLMNEGIFDIVTDALQSQDKKLV------LTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITD-FGED 296 (744)
Q Consensus 224 ~~lfk~Lv~~GLl~vi~~~L~~~d~~ir------~~atDILi~iie~dPslvR~~i~~qe~~~Ll~lLi~~ll~D-~~~g 296 (744)
..++.+|++.+++..+-.-+..=|.++. -...-++..+++.+|+.. +-++++ .|+.+|.+.+... .-.+
T Consensus 166 evLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~-~~~~e~---~ll~WLL~rl~~k~~f~a 241 (536)
T KOG2734|consen 166 EVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAIC-TEIVEQ---GLLSWLLKRLKGKAAFDA 241 (536)
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHH-HHHHHh---hHHHHHHHHHhcccCcch
Confidence 4689999999999888776654444332 122335556788888753 334443 5777776653221 1224
Q ss_pred hHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCcCCCcHHHHHHHHHHHHHHH
Q 004575 297 MHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCV 376 (744)
Q Consensus 297 L~~Ql~eaLk~LLDp~~m~~~ekd~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv 376 (744)
-+...+|+|-+||...+-+. .-+.- . ..++-|++.|... . ..+|. +....++..++.+-||-|+
T Consensus 242 Nk~YasEiLaillq~s~e~~----~~~~~-l-~GiD~lL~~la~y----k---~~dP~---~~~E~EmmeNLFdcLCs~l 305 (536)
T KOG2734|consen 242 NKQYASEILAILLQNSDENR----KLLGP-L-DGIDVLLRQLAVY----K---RHDPA---TVDEEEMMENLFDCLCSLL 305 (536)
T ss_pred hHHHHHHHHHHHhccCchhh----hhhcC-c-ccHHHHHhhcchh----h---ccCCC---CcCHHHHHHHHHHHHHHHh
Confidence 46788899999996544210 00000 0 1233344433211 0 00010 1225567888899999988
Q ss_pred hcCCccchhHHhhhhHH-HHHHHhhcccchhHHHHHHHHHHHHHccCh-hHHHHHHHhhCcHHHHHHHHHHh
Q 004575 377 LHHPYRIKCNFLLNNVV-DKVLLLTRRREKYLVVAAVRFVRTILSRHD-EHLINHFVKNNLLKPIVDAFVAN 446 (744)
Q Consensus 377 ~~H~yriK~~~l~~nll-~kVl~Ll~~~~K~L~LaALRFlR~iI~lkD-efy~ryiIk~nLf~PVl~~f~~n 446 (744)
.+-.-|- .|+....+ ...+.+ +- .|..+=+|+|++-.+..-.| .-+..-++...=++.||-+|...
T Consensus 306 m~~~nr~--~Fl~~EGlqLm~Lml-r~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~ 373 (536)
T KOG2734|consen 306 MAPANRE--RFLKGEGLQLMNLML-RE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKT 373 (536)
T ss_pred cChhhhh--hhhccccHHHHHHHH-HH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhC
Confidence 8877654 46665544 344333 32 68888999999998876444 14555566667778888888743
No 18
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=84.54 E-value=36 Score=34.55 Aligned_cols=187 Identities=15% Similarity=0.154 Sum_probs=101.6
Q ss_pred CCCCCCHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCChhhhHHHHHHHHHHHhcChHHHHH
Q 004575 192 RSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRS 271 (744)
Q Consensus 192 ~~~~~~~e~rrd~v~FL~E~c~~sK~LQ~~~r~~lfk~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~iie~dPslvR~ 271 (744)
+.++.+=+.|.+++.-|+.++.-. ........++..|- .++..+...+.+....+...|+..+..+..+-..-+..
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~--~~~~~~~~~~~~l~--~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~ 90 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGN--APEDFPPDFVECLR--QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEP 90 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH---B-----HHHHHHHH-----HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHH
T ss_pred cCCccCHHHHHHHHHHHHHHHHcC--CccccHHHHHHHHH--HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHH
Confidence 344556678899999999998855 11112233333333 67777888888888888889999988887665554554
Q ss_pred HHHhccCCCcHHHHHHHHhhcCCcchHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc
Q 004575 272 YVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSA 351 (744)
Q Consensus 272 ~i~~qe~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk~LLDp~~m~~~ekd~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~ 351 (744)
++- .++..|++. +.+...-++.....+|..++..-++ ..+.+ +..+...+
T Consensus 91 ~~~-----~~l~~Ll~~-~~~~~~~i~~~a~~~L~~i~~~~~~------------~~~~~---~~~l~~~~--------- 140 (228)
T PF12348_consen 91 YAD-----ILLPPLLKK-LGDSKKFIREAANNALDAIIESCSY------------SPKIL---LEILSQGL--------- 140 (228)
T ss_dssp HHH-----HHHHHHHHG-GG---HHHHHHHHHHHHHHHTTS-H--------------HHH---HHHHHHHT---------
T ss_pred HHH-----HHHHHHHHH-HccccHHHHHHHHHHHHHHHHHCCc------------HHHHH---HHHHHHHH---------
Confidence 432 244555542 3444445666677777777654331 01111 22222111
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHHHhcCC---ccchhHHhhhhHHHHHHHhhcccchhHHHHHHHHHHHH
Q 004575 352 SSGGRVESTKPEILSNICELLCFCVLHHP---YRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTI 418 (744)
Q Consensus 352 ~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~---yriK~~~l~~nll~kVl~Ll~~~~K~L~LaALRFlR~i 418 (744)
....+.+=...+++|..++..++ -.+........+..-+..++.-.+.-++-+|-++|..+
T Consensus 141 ------~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 141 ------KSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWAL 204 (228)
T ss_dssp ------T-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred ------hCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 01234445567889999999998 44444444456777777788888888888888888776
No 19
>PTZ00429 beta-adaptin; Provisional
Probab=83.98 E-value=1.2e+02 Score=37.58 Aligned_cols=159 Identities=16% Similarity=0.110 Sum_probs=92.9
Q ss_pred hHhHHHHHHHHHhcCcHH-------HHHHHHcCCChhhhHHHHHHHHHHHhcChHHHHHHHHhccCCCcHHHHHHHHhhc
Q 004575 220 MVQQLRLFRDLMNEGIFD-------IVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITD 292 (744)
Q Consensus 220 ~~~r~~lfk~Lv~~GLl~-------vi~~~L~~~d~~ir~~atDILi~iie~dPslvR~~i~~qe~~~Ll~lLi~~ll~D 292 (744)
+.-|.--.|+|..-++-. .+..+|.+.++-||.+|+=-+.-+...+|.++.. ..++..|.+ |+.|
T Consensus 119 p~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~-------~~~~~~L~~-LL~D 190 (746)
T PTZ00429 119 PVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ-------QDFKKDLVE-LLND 190 (746)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccc-------cchHHHHHH-HhcC
Confidence 344666666776555433 3455677889999998888888888888875421 225555665 6789
Q ss_pred CCcchHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCcCCCcHHHHHHHHHHH
Q 004575 293 FGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELL 372 (744)
Q Consensus 293 ~~~gL~~Ql~eaLk~LLDp~~m~~~ekd~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL 372 (744)
.++++....+-+|..+.... +.+ ++.. ..++.+|+.-|.. ...+....|+++|
T Consensus 191 ~dp~Vv~nAl~aL~eI~~~~----~~~---l~l~-~~~~~~Ll~~L~e-------------------~~EW~Qi~IL~lL 243 (746)
T PTZ00429 191 NNPVVASNAAAIVCEVNDYG----SEK---IESS-NEWVNRLVYHLPE-------------------CNEWGQLYILELL 243 (746)
T ss_pred CCccHHHHHHHHHHHHHHhC----chh---hHHH-HHHHHHHHHHhhc-------------------CChHHHHHHHHHH
Confidence 99988777666666554211 111 1111 1222333332211 1234455777877
Q ss_pred HHHHhcCCccchhHHhhhhHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 004575 373 CFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 419 (744)
Q Consensus 373 ~Fcv~~H~yriK~~~l~~nll~kVl~Ll~~~~K~L~LaALRFlR~iI 419 (744)
+-...... --..+++.++...++...--++++|+|++=.+.
T Consensus 244 ~~y~P~~~------~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 244 AAQRPSDK------ESAETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred HhcCCCCc------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 55332211 112467777777777777788888888765543
No 20
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=79.70 E-value=2.6e+02 Score=38.63 Aligned_cols=212 Identities=17% Similarity=0.179 Sum_probs=148.4
Q ss_pred hcCcHHHHHHHHcCCChhhhHHHHHHHHHHHhcChHHHHHHHHhccCCC-cHHHHHHHHhhcCCcchHHHHHHHHHHhcC
Q 004575 232 NEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIP-LLGLLVKGMITDFGEDMHCQFLEILRSLLD 310 (744)
Q Consensus 232 ~~GLl~vi~~~L~~~d~~ir~~atDILi~iie~dPslvR~~i~~qe~~~-Ll~lLi~~ll~D~~~gL~~Ql~eaLk~LLD 310 (744)
..|-++.+...|.+++..++..|+.+|..+....+..... +...+..+ |+.+| ...+.+.+.+..-+|-.|..
T Consensus 607 ~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~a-vv~agaIpPLV~LL-----ss~~~~v~keAA~AL~nL~~ 680 (2102)
T PLN03200 607 ANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCES-LATDEIINPCIKLL-----TNNTEAVATQSARALAALSR 680 (2102)
T ss_pred ccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHH-HHHcCCHHHHHHHH-----hcCChHHHHHHHHHHHHHHh
Confidence 3577899999999999999999999999999988885444 45444332 33333 34556667778888777765
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCcCCCcHHHHHHHHHHHHHHHhcCCccchhHHhhh
Q 004575 311 SYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLN 390 (744)
Q Consensus 311 p~~m~~~ekd~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~yriK~~~l~~ 390 (744)
.. ...++-.+.+ ..+++-|++.|..+ ...+....++-|..++++..-+ .-+...
T Consensus 681 ~~--~~~q~~~~v~---~GaV~pL~~LL~~~-------------------d~~v~e~Al~ALanLl~~~e~~--~ei~~~ 734 (2102)
T PLN03200 681 SI--KENRKVSYAA---EDAIKPLIKLAKSS-------------------SIEVAEQAVCALANLLSDPEVA--AEALAE 734 (2102)
T ss_pred CC--CHHHHHHHHH---cCCHHHHHHHHhCC-------------------ChHHHHHHHHHHHHHHcCchHH--HHHHhc
Confidence 22 1112222221 12456666655321 3345566778888888877643 456778
Q ss_pred hHHHHHHHhhcccchhHHHHHHHHHHHHHccC--hhHHHHHHHhhCcHHHHHHHHHHhCCCCcchhHHHHHHHHHHHh--
Q 004575 391 NVVDKVLLLTRRREKYLVVAAVRFVRTILSRH--DEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK-- 466 (744)
Q Consensus 391 nll~kVl~Ll~~~~K~L~LaALRFlR~iI~lk--Defy~ryiIk~nLf~PVl~~f~~ng~R~NLlnSA~LELfEfIr~-- 466 (744)
+.+.....++++...-.+-.|.+-+-.+..-. |+-+-.|+-.-+.+.|.++++... +-+|..++-.||-+.++-+
T Consensus 735 ~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~-~~~~~~~~~al~~l~~l~~~~ 813 (2102)
T PLN03200 735 DIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNST-DLDSSATSEALEALALLARTK 813 (2102)
T ss_pred CcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcC-CcchhhHHHHHHHHHHHHhhc
Confidence 88999999999988777888888777776443 345668999999999999998654 5668888888999988865
Q ss_pred -----------------hchHHHHHHH
Q 004575 467 -----------------ENLKSLVKYI 476 (744)
Q Consensus 467 -----------------eNik~Li~hl 476 (744)
+++.+|+.+|
T Consensus 814 ~~~~~~~~~~~~~~e~p~~l~~l~~~l 840 (2102)
T PLN03200 814 GGANFSHPPWAVLAEVPSSLEPLVRCL 840 (2102)
T ss_pred ccCCCCCCchhhHHhccCchHHHHHHH
Confidence 5677777776
No 21
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=79.68 E-value=28 Score=39.28 Aligned_cols=143 Identities=17% Similarity=0.265 Sum_probs=91.4
Q ss_pred HHHHhhcChHHHHHHHHH---------hCCCCCCHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHH
Q 004575 173 VVSLLKDDSTFIQELFAR---------LRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDAL 243 (744)
Q Consensus 173 IV~~Lq~d~~FL~eLF~~---------l~~~~~~~e~rrd~v~FL~E~c~~sK~LQ~~~r~~lfk~Lv~~GLl~vi~~~L 243 (744)
|+.|+-.|..+++.+... |..++.....|-++.+|++.|+.+-+..+. +..|+...|--+.
T Consensus 48 ilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~----------~~~~vvralvaia 117 (371)
T PF14664_consen 48 ILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE----------IPRGVVRALVAIA 117 (371)
T ss_pred HHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc----------CCHHHHHHHHHHH
Confidence 556777777887776652 222334467899999999999998543321 2456666666666
Q ss_pred cCCChhhhHHHHHHHHHHHhcChHHHHHHHHhccCCCcHHHHHHHHhhcCCcchHHHHHHHHHHhcCCCCCChhhHHHHH
Q 004575 244 QSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTII 323 (744)
Q Consensus 244 ~~~d~~ir~~atDILi~iie~dPslvR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk~LLDp~~m~~~ekd~fL 323 (744)
.+++...|.++.++|.-+.=.||.++-. -+| +..|++.++. ....+...+..++-.|||.+. ...++
T Consensus 118 e~~~D~lr~~cletL~El~l~~P~lv~~----~gG---~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p~-----tR~yl 184 (371)
T PF14664_consen 118 EHEDDRLRRICLETLCELALLNPELVAE----CGG---IRVLLRALID-GSFSISESLLDTLLYLLDSPR-----TRKYL 184 (371)
T ss_pred hCCchHHHHHHHHHHHHHHhhCHHHHHH----cCC---HHHHHHHHHh-ccHhHHHHHHHHHHHHhCCcc-----hhhhh
Confidence 7788899999999999999999997533 222 2333333322 222366677788888888643 22333
Q ss_pred HHHHHHHHHHHHHHHHh
Q 004575 324 EIFYEKHLGQLIDVITA 340 (744)
Q Consensus 324 ~~FY~~~~~~L~~pL~~ 340 (744)
..-+ .+..|+.|+++
T Consensus 185 ~~~~--dL~~l~apftd 199 (371)
T PF14664_consen 185 RPGF--DLESLLAPFTD 199 (371)
T ss_pred cCCc--cHHHHHHhhhh
Confidence 2222 24556777654
No 22
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=79.58 E-value=94 Score=33.39 Aligned_cols=70 Identities=19% Similarity=0.344 Sum_probs=57.1
Q ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHccChhHHHHHHHhhCcHHHHHHHHHHhCCCCcchhHHHHHHHHHHH
Q 004575 392 VVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIR 465 (744)
Q Consensus 392 ll~kVl~Ll~~~~K~L~LaALRFlR~iI~lkDefy~ryiIk~nLf~PVl~~f~~ng~R~NLlnSA~LELfEfIr 465 (744)
.+..++.|+.....-.+.-|||.+=.+= .+.-..++|+..+.+..++.+|-.+.++.||+. +|-||+-|.
T Consensus 135 ~i~~ll~LL~~G~~~~k~~vLk~L~nLS--~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~--~l~~~~ni~ 204 (254)
T PF04826_consen 135 YIPDLLSLLSSGSEKTKVQVLKVLVNLS--ENPDMTRELLSAQVLSSFLSLFNSSESKENLLR--VLTFFENIN 204 (254)
T ss_pred hHHHHHHHHHcCChHHHHHHHHHHHHhc--cCHHHHHHHHhccchhHHHHHHccCCccHHHHH--HHHHHHHHH
Confidence 5666788888888888888888665542 456678999999999999999999999999985 677888763
No 23
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=75.91 E-value=23 Score=31.17 Aligned_cols=77 Identities=18% Similarity=0.141 Sum_probs=61.1
Q ss_pred HHhcCcHHHHHHHHcCCChhhhHHHHHHHHHHHhcChHHHHHHHHhccCCCcHHHHHHHHhhcCCcchHHHHHHHHHHhc
Q 004575 230 LMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 309 (744)
Q Consensus 230 Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~iie~dPslvR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk~LL 309 (744)
+++.|+++.+-..|++.+..+|..++-.|..+...+|.....+ .+ ...+..|++. +.+.++.++.+...+|..|.
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~---~~~i~~l~~~-l~~~~~~v~~~a~~~L~~l~ 77 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAV-VE---AGGLPALVQL-LKSEDEEVVKAALWALRNLA 77 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHH-HH---CCChHHHHHH-HhCCCHHHHHHHHHHHHHHc
Confidence 5688999999999999999999999999999999988765554 43 2456666664 45667888888899999887
Q ss_pred CC
Q 004575 310 DS 311 (744)
Q Consensus 310 Dp 311 (744)
..
T Consensus 78 ~~ 79 (120)
T cd00020 78 AG 79 (120)
T ss_pred cC
Confidence 54
No 24
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=74.67 E-value=1.3e+02 Score=33.20 Aligned_cols=150 Identities=17% Similarity=0.251 Sum_probs=87.3
Q ss_pred HHHHHhhcChHHHHHHHHHhCCCCCCHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCC----C
Q 004575 172 YVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQ----D 247 (744)
Q Consensus 172 eIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~~sK~LQ~~~r~~lfk~Lv~~GLl~vi~~~L~~~----d 247 (744)
.|+..|-++. ++.+..-|.+.. .....-++++|.+++.+-. ...-.++|+.+ +. =++++...+... .
T Consensus 48 ~l~~~iL~~~--~k~lyr~L~~~~--~~~~~~~LrLL~~iv~f~~---g~~a~~v~~~f-d~-~~~~l~kll~~~~~~~~ 118 (330)
T PF11707_consen 48 ELIRSILQNH--LKLLYRSLSSSK--PSLTNPALRLLTAIVSFDG---GALAREVLRSF-DF-SLKSLPKLLTPRKKEKE 118 (330)
T ss_pred HHHHHHHHHH--HHHHHHHhCcCc--HHHHHHHHHHHHHHHccCC---HHHHHHHHHhc-CC-chhhHHHHhcccccccc
Confidence 4555554432 777777776554 2334467788888877421 11123344444 11 123333333211 1
Q ss_pred ---------hhhhHHHHHHHHHHHhcChHHHHHHHHhccCCCcHHHHHHHHhhcCCcchHHHHHHHHH-HhcCCCCCChh
Q 004575 248 ---------KKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILR-SLLDSYTLSGA 317 (744)
Q Consensus 248 ---------~~ir~~atDILi~iie~dPslvR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk-~LLDp~~m~~~ 317 (744)
..+|...++.+++++.+.+..++..++.+.+ ++..+.+.|-.|. +++-.++.+.|+ .+|......-.
T Consensus 119 ~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~--~~~~l~k~l~~D~-~~~v~~iL~~l~~~Vl~~~~v~r~ 195 (330)
T PF11707_consen 119 KDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKK--LMSALFKGLRKDP-PETVILILETLKDKVLKDSSVSRS 195 (330)
T ss_pred ccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCc--hHHHHHhcccCCC-HHHHHHHHHHHHHHhccCCCCChh
Confidence 2899999999999988877777777776543 4888889888875 456678888887 24443344323
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 004575 318 QRDTIIEIFYEKHLGQLID 336 (744)
Q Consensus 318 ekd~fL~~FY~~~~~~L~~ 336 (744)
.|-. +|=+..+.+|..
T Consensus 196 ~K~~---~fn~~~L~~l~~ 211 (330)
T PF11707_consen 196 TKCK---LFNEWTLSQLAS 211 (330)
T ss_pred hhhh---hcCHHHHHHHHH
Confidence 3333 333445555555
No 25
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=73.33 E-value=1.4e+02 Score=32.15 Aligned_cols=186 Identities=15% Similarity=0.213 Sum_probs=107.5
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHHHHHHHhh--hccChHhHHHHHHHHH-hcCcHHHHHHHHcCCChhhhHHHHHH
Q 004575 181 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLS--KSLQMVQQLRLFRDLM-NEGIFDIVTDALQSQDKKLVLTGTDI 257 (744)
Q Consensus 181 ~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~~s--K~LQ~~~r~~lfk~Lv-~~GLl~vi~~~L~~~d~~ir~~atDI 257 (744)
+..++.|...|+....+ |+|+.+.++ ..-. ..+-+.++ +.|.+++|...|.++++.+|..|+..
T Consensus 11 ~~~l~~Ll~lL~~t~dp---------~i~e~al~al~n~aa----f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~a 77 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDP---------FIQEKALIALGNSAA----FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNA 77 (254)
T ss_pred HHHHHHHHHHHhcCCCh---------HHHHHHHHHHHhhcc----ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHH
Confidence 45678888888754332 555554332 2211 22445555 45999999999999999999888877
Q ss_pred HHHHHhcChH--HHHHHHHhccCCCcHHHHHHHHhhc-CCcchHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHH
Q 004575 258 LILFLNQDPN--LLRSYVVRQEGIPLLGLLVKGMITD-FGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQL 334 (744)
Q Consensus 258 Li~iie~dPs--lvR~~i~~qe~~~Ll~lLi~~ll~D-~~~gL~~Ql~eaLk~LLDp~~m~~~ekd~fL~~FY~~~~~~L 334 (744)
|..+-....+ .++. .+..+++..++. .+.. .| ..+||.|..-...+ +... .+. ++++.|
T Consensus 78 L~Nls~~~en~~~Ik~---------~i~~Vc~~~~s~~lns~--~Q-~agLrlL~nLtv~~--~~~~---~l~-~~i~~l 139 (254)
T PF04826_consen 78 LNNLSVNDENQEQIKM---------YIPQVCEETVSSPLNSE--VQ-LAGLRLLTNLTVTN--DYHH---MLA-NYIPDL 139 (254)
T ss_pred HHhcCCChhhHHHHHH---------HHHHHHHHHhcCCCCCH--HH-HHHHHHHHccCCCc--chhh---hHH-hhHHHH
Confidence 7755444443 2222 344555554444 3443 44 34667664322111 1111 222 467777
Q ss_pred HHHHHhcCCccccccccCCCCCcCCCcHHHHHHHHHHHHHHHhcCCccchhHHhhhhHHHHHHHhhccc-chhHHHHHHH
Q 004575 335 IDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRR-EKYLVVAAVR 413 (744)
Q Consensus 335 ~~pL~~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~yriK~~~l~~nll~kVl~Ll~~~-~K~L~LaALR 413 (744)
+..|.... . .+-.+.+.+|.-....-.. -+.++....+...+.|+... .+-+.+-||.
T Consensus 140 l~LL~~G~-----------------~--~~k~~vLk~L~nLS~np~~--~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~ 198 (254)
T PF04826_consen 140 LSLLSSGS-----------------E--KTKVQVLKVLVNLSENPDM--TRELLSAQVLSSFLSLFNSSESKENLLRVLT 198 (254)
T ss_pred HHHHHcCC-----------------h--HHHHHHHHHHHHhccCHHH--HHHHHhccchhHHHHHHccCCccHHHHHHHH
Confidence 76554320 1 1122444555444443332 24567777788888887776 5778888899
Q ss_pred HHHHH
Q 004575 414 FVRTI 418 (744)
Q Consensus 414 FlR~i 418 (744)
||-+|
T Consensus 199 ~~~ni 203 (254)
T PF04826_consen 199 FFENI 203 (254)
T ss_pred HHHHH
Confidence 88887
No 26
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=72.04 E-value=16 Score=42.64 Aligned_cols=97 Identities=21% Similarity=0.319 Sum_probs=75.4
Q ss_pred hhHHHHHHHhhcChHHHHHHHHHhCCCCCCHHhHHHHHHHHHHHHHhhhccChH-----hHHHHHHHHHhcCcH-HHHHH
Q 004575 168 GNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMV-----QQLRLFRDLMNEGIF-DIVTD 241 (744)
Q Consensus 168 fNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~~sK~LQ~~-----~r~~lfk~Lv~~GLl-~vi~~ 241 (744)
.....|+++|.+ ..++..|.+.|. |..+.+....+..||++++.++.+-+.. .-..|.+.|++.-.. ..+..
T Consensus 49 ~~~~~ilewL~~-q~LI~~Li~~L~-p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~ 126 (475)
T PF04499_consen 49 ESPTGILEWLAE-QNLIPRLIDLLS-PSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDI 126 (475)
T ss_pred cchHHHHHHHHH-hCHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHH
Confidence 456779999986 699999999998 7777888899999999999998764322 125688889887644 46677
Q ss_pred HHcCCChhhhHHHHHHHHHHHhcCh
Q 004575 242 ALQSQDKKLVLTGTDILILFLNQDP 266 (744)
Q Consensus 242 ~L~~~d~~ir~~atDILi~iie~dP 266 (744)
+|..........|+.|++.+|....
T Consensus 127 mL~~~~~s~lvn~v~IlieLIRknn 151 (475)
T PF04499_consen 127 MLNSQGGSSLVNGVSILIELIRKNN 151 (475)
T ss_pred HhcCCCcchHHHHHHHHHHHHHhcc
Confidence 8864447778889999999886553
No 27
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=71.45 E-value=1.2e+02 Score=36.67 Aligned_cols=144 Identities=18% Similarity=0.215 Sum_probs=80.9
Q ss_pred cccchhhHHhHHHHHHhhHHHHH-HHhhcChHHHHHHHHHhCCCCCCHHhHHHHHHH--HHHHHHhh-hccChHhHHHHH
Q 004575 152 RVLDEATVANLNSIIHGNNAYVV-SLLKDDSTFIQELFARLRSPTTLEESKKNLVHF--LHEFCGLS-KSLQMVQQLRLF 227 (744)
Q Consensus 152 R~LDD~t~s~LnS~IffNqveIV-~~Lq~d~~FL~eLF~~l~~~~~~~e~rrd~v~F--L~E~c~~s-K~LQ~~~r~~lf 227 (744)
+.|-.+. ++=|++-+---+.++ ..|..|++|+..+--.|.+.-. .|.|.|.+ -+-+|++| +|..++ |+
T Consensus 230 ~hf~~n~-smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls---~k~emV~lE~Ar~v~~~~~~nv~~~----~~ 301 (898)
T COG5240 230 EHFRGNA-SMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLS---DKFEMVFLEAARAVCALSEENVGSQ----FV 301 (898)
T ss_pred HHhhccc-ccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhc---CcchhhhHHHHHHHHHHHHhccCHH----HH
Confidence 5555554 555555444444443 5777787776655443332111 12222211 24455554 233322 22
Q ss_pred HHHHhcCcHHHHHHHHcCCChhhhHHHHHHHHHHHhcChHHHHHH----------------------HHhccC----CCc
Q 004575 228 RDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSY----------------------VVRQEG----IPL 281 (744)
Q Consensus 228 k~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~iie~dPslvR~~----------------------i~~qe~----~~L 281 (744)
.. ...+++..|+++....|..|.-||.-+..-.|..|..- +++... ..|
T Consensus 302 ~~-----~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrL 376 (898)
T COG5240 302 DQ-----TVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRL 376 (898)
T ss_pred HH-----HHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHH
Confidence 22 23577888889999999999999988888777654321 111100 125
Q ss_pred HHHHHHHHhhcCCcchHHHHHHHHHHhc
Q 004575 282 LGLLVKGMITDFGEDMHCQFLEILRSLL 309 (744)
Q Consensus 282 l~lLi~~ll~D~~~gL~~Ql~eaLk~LL 309 (744)
++++. .++.|.+.|.|.-+.+|+|.|-
T Consensus 377 v~~I~-sfvhD~SD~FKiI~ida~rsLs 403 (898)
T COG5240 377 VNLIP-SFVHDMSDGFKIIAIDALRSLS 403 (898)
T ss_pred HHHHH-HHHHhhccCceEEeHHHHHHHH
Confidence 55544 3677877888888889999884
No 28
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.17 E-value=1e+02 Score=38.26 Aligned_cols=68 Identities=18% Similarity=0.310 Sum_probs=54.9
Q ss_pred HHHHHHHcCCChhhhHHHHHHHHHHHhcChHHHHHHHHhccCCCcHHHHHHHHhhcCCcchHHHHHHHHHHhcCCCCC
Q 004575 237 DIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTL 314 (744)
Q Consensus 237 ~vi~~~L~~~d~~ir~~atDILi~iie~dPslvR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk~LLDp~~m 314 (744)
++|...|.+.|..+|-.|.+.|...|.+||+.+.++= .+.+.. +.|.++.++.-.+|.+-.|++..|.
T Consensus 316 niLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr-----~tIleC-----L~DpD~SIkrralELs~~lvn~~Nv 383 (866)
T KOG1062|consen 316 NILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHR-----STILEC-----LKDPDVSIKRRALELSYALVNESNV 383 (866)
T ss_pred HHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHH-----HHHHHH-----hcCCcHHHHHHHHHHHHHHhccccH
Confidence 6777889999999999999999999999999876652 222222 4688888898899998888887764
No 29
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=68.03 E-value=49 Score=30.42 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=41.6
Q ss_pred cHHHHHHHHcCCChhhhHHHHHHHHHHHhcChHHHHHHHHhccCCCcHHHHHHHHhhcCCcchHH
Q 004575 235 IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHC 299 (744)
Q Consensus 235 Ll~vi~~~L~~~d~~ir~~atDILi~iie~dPslvR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~~ 299 (744)
|++.+-..+.++|..+|-.|++-|..|..+-...+=.+.. .++..|++ +..|.++.++.
T Consensus 28 Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~-----~IF~~L~k-l~~D~d~~Vr~ 86 (97)
T PF12755_consen 28 ILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFN-----EIFDALCK-LSADPDENVRS 86 (97)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH-HHcCCchhHHH
Confidence 4455557788999999999999999988765543322322 36777776 56888877663
No 30
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.86 E-value=2.8e+02 Score=34.72 Aligned_cols=150 Identities=20% Similarity=0.217 Sum_probs=82.4
Q ss_pred hHHhHHHHHHhhHHHHHHHhhcChHHHHHHHHHhCCCCCCHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHH
Q 004575 158 TVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFD 237 (744)
Q Consensus 158 t~s~LnS~IffNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~~sK~LQ~~~r~~lfk~Lv~~GLl~ 237 (744)
+...|++++-.--.+.=+.|+..|.=+..|...++|.-. .-|.+++.||.++..=.-++| |..-|.+-+.+ ||+
T Consensus 142 aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE--~IRNe~iLlL~eL~k~n~~IQ---KlVAFENaFer-Lfs 215 (970)
T KOG0946|consen 142 AIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSRE--PIRNEAILLLSELVKDNSSIQ---KLVAFENAFER-LFS 215 (970)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhh--hhchhHHHHHHHHHccCchHH---HHHHHHHHHHH-HHH
Confidence 566777777766777777888888889999999986432 358899999988776544444 55555554433 555
Q ss_pred HHHHHHcCCChhhhHHHH-HHHHHHHhcChHHHHHHHHhccCC--CcHHHHHHHHhhcC-Ccch-------HHHHHHHHH
Q 004575 238 IVTDALQSQDKKLVLTGT-DILILFLNQDPNLLRSYVVRQEGI--PLLGLLVKGMITDF-GEDM-------HCQFLEILR 306 (744)
Q Consensus 238 vi~~~L~~~d~~ir~~at-DILi~iie~dPslvR~~i~~qe~~--~Ll~lLi~~ll~D~-~~gL-------~~Ql~eaLk 306 (744)
+|+.-=. -|..|++.-| =.|..++-.+.+ .+-++++.+. .|..+|..-...|. ..|- -.-+.+++|
T Consensus 216 IIeeEGg-~dGgIVveDCL~ll~NLLK~N~S--NQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr 292 (970)
T KOG0946|consen 216 IIEEEGG-LDGGIVVEDCLILLNNLLKNNIS--NQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVR 292 (970)
T ss_pred HHHhcCC-CCCcchHHHHHHHHHHHHhhCcc--hhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHH
Confidence 5553211 1333333222 233344544443 2223332221 13333332112221 0011 123567889
Q ss_pred HhcCCCCCCh
Q 004575 307 SLLDSYTLSG 316 (744)
Q Consensus 307 ~LLDp~~m~~ 316 (744)
.|.-|.+..+
T Consensus 293 ~lVsP~Nt~~ 302 (970)
T KOG0946|consen 293 SLVSPGNTSS 302 (970)
T ss_pred HhcCCCCcHH
Confidence 9998877654
No 31
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.22 E-value=4e+02 Score=34.68 Aligned_cols=99 Identities=13% Similarity=0.148 Sum_probs=54.6
Q ss_pred HHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCChhhhHHHHHHHHHHHhcChHHHHHHHHhcc
Q 004575 198 EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQE 277 (744)
Q Consensus 198 ~e~rrd~v~FL~E~c~~sK~LQ~~~r~~lfk~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~iie~dPslvR~~i~~qe 277 (744)
..-++.+-..|.++|.. .+-+. +-.+.+ .-|++.+-..+++.....+.....-|-.|++--|+-.-+++.+
T Consensus 668 ~~vQkK~yrlL~~l~~~-~s~~~-----~~~q~i-~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k-- 738 (1176)
T KOG1248|consen 668 TKVQKKAYRLLEELSSS-PSGEG-----LVEQRI-DDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK-- 738 (1176)
T ss_pred HHHHHHHHHHHHHHhcC-Cchhh-----HHHHHH-HHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH--
Confidence 34456666777777775 11111 111111 1256677777788888888888888888888777544444443
Q ss_pred CCCcHHHHHHHHhhcCCcchHHHHHHHHHHhc
Q 004575 278 GIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 309 (744)
Q Consensus 278 ~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk~LL 309 (744)
.+.++++. .++.+.+.+--.++.|..+.
T Consensus 739 --~I~EvIL~--~Ke~n~~aR~~Af~lL~~i~ 766 (1176)
T KOG1248|consen 739 --LIPEVILS--LKEVNVKARRNAFALLVFIG 766 (1176)
T ss_pred --HHHHHHHh--cccccHHHHhhHHHHHHHHH
Confidence 12233332 14555544444444444444
No 32
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=62.97 E-value=68 Score=34.63 Aligned_cols=99 Identities=21% Similarity=0.251 Sum_probs=59.0
Q ss_pred CHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCChhhhHHHHHHHHHH-HhcChHHHHHHHHh
Q 004575 197 LEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF-LNQDPNLLRSYVVR 275 (744)
Q Consensus 197 ~~e~rrd~v~FL~E~c~~sK~LQ~~~r~~lfk~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~i-ie~dPslvR~~i~~ 275 (744)
+..-|..++.-|--||-+.+.+-.+. +.++-.+++.++..++.+|..++.-+ +-|++..+......
T Consensus 40 ~~~vR~~al~cLGl~~Lld~~~a~~~-------------l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~ 106 (298)
T PF12719_consen 40 DPAVRELALKCLGLCCLLDKELAKEH-------------LPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDN 106 (298)
T ss_pred CHHHHHHHHHHHHHHHHhChHHHHHH-------------HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhcc
Confidence 45778999999999999877544322 22333333445777777777777654 45666654443220
Q ss_pred ---ccCCCcHHHHHHHHhhcCCcchHHHHHHHHHHhc
Q 004575 276 ---QEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 309 (744)
Q Consensus 276 ---qe~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk~LL 309 (744)
.....++.++.+.+..+ +++++..+.|.+.-|+
T Consensus 107 ~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 107 DESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLL 142 (298)
T ss_pred CccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 01234666666655444 5667777776666555
No 33
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=59.72 E-value=2e+02 Score=29.11 Aligned_cols=101 Identities=21% Similarity=0.320 Sum_probs=69.0
Q ss_pred HHHHHHhcCcH-----------HHHHHHHcCC-ChhhhHHHHHHHHHHHhcChHHHHHHHHhccCCCcHHHHHHHHhhcC
Q 004575 226 LFRDLMNEGIF-----------DIVTDALQSQ-DKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDF 293 (744)
Q Consensus 226 lfk~Lv~~GLl-----------~vi~~~L~~~-d~~ir~~atDILi~iie~dPslvR~~i~~qe~~~Ll~lLi~~ll~D~ 293 (744)
-|..|.+||+. ++..++=+.. |..+...+..||-.++..+|.+ .+.+.+ ..-+.-|+..|.. .
T Consensus 40 af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~l-y~~V~~---evt~~~Li~hLq~-~ 114 (160)
T PF11841_consen 40 AFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKL-YQLVEQ---EVTLESLIRHLQV-S 114 (160)
T ss_pred HHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHH-HHHHhc---cCCHHHHHHHHHc-C
Confidence 46678888873 2334443333 8899999999999999988874 444443 3456666666544 6
Q ss_pred CcchHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHH
Q 004575 294 GEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQ 333 (744)
Q Consensus 294 ~~gL~~Ql~eaLk~LLDp~~m~~~ekd~fL~~FY~~~~~~ 333 (744)
++.++.-.+..|-.|+=-. +..+|.++.+.|..+.+..
T Consensus 115 ~~~iq~naiaLinAL~~kA--~~~~r~~i~~~l~~k~~R~ 152 (160)
T PF11841_consen 115 NQEIQTNAIALINALFLKA--DDSKRKEIAETLSQKQIRQ 152 (160)
T ss_pred CHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHH
Confidence 6777777777777776322 2347789999999887644
No 34
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=58.41 E-value=4.8e+02 Score=33.01 Aligned_cols=129 Identities=17% Similarity=0.259 Sum_probs=70.5
Q ss_pred hHHHHHHhhHHHHHH-HhhcChHHHHHHHHHhCCCCCCHHhHHHHHHHHHHHHH--h-hhccChHh----HHHHHHHHHh
Q 004575 161 NLNSIIHGNNAYVVS-LLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCG--L-SKSLQMVQ----QLRLFRDLMN 232 (744)
Q Consensus 161 ~LnS~IffNqveIV~-~Lq~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~--~-sK~LQ~~~----r~~lfk~Lv~ 232 (744)
.+.+-|+.-.+.-|+ .|-+|..+|..||+++..+.. ...-+..|+.-+.. + .|..|.-. +..++.-|+.
T Consensus 79 ~i~~Eilt~dv~~I~~~l~~de~ll~~l~s~l~~~~p---ln~~l~s~F~k~~~~Ll~~k~~~~~~f~k~~~~~v~~~l~ 155 (838)
T KOG2073|consen 79 NISCEILTSDVWPISEALVEDESLLSLLYSILEHEPP---LNPLLSSFFSKINSRLLDRKTEQILEFIKKKDNFVDLFLK 155 (838)
T ss_pred cHHHHHHhcCcHHHHHHHhccHHHHHHHHHHhcCCCc---ccchhHHHHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHH
Confidence 456667766666554 777889999999999986521 11122222222211 1 12222222 5556666665
Q ss_pred c-CcHHHHHHHHcCC--ChhhhHHHHHHHHHHHhcCh-HHHHHHHHhccCCCcHHHHHHHHhhcCCcchHHHHHHHHHHh
Q 004575 233 E-GIFDIVTDALQSQ--DKKLVLTGTDILILFLNQDP-NLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL 308 (744)
Q Consensus 233 ~-GLl~vi~~~L~~~--d~~ir~~atDILi~iie~dP-slvR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk~L 308 (744)
| |+..++.+.|+.- |.. ..| ..|-+++..++ ++.-|+..+....++++++-..+.|+.+
T Consensus 156 hi~~stlMD~Llkli~~de~--------------~~p~~~Viq~l~d~~---li~kll~ll~ps~~~~~qsna~~~L~~i 218 (838)
T KOG2073|consen 156 HIDISTLMDFLLKLISTDEP--------------ESPRTDVIQWLNDQE---LIPKLLELLNPSKDPDVQSNAGQTLCAI 218 (838)
T ss_pred HcCccHHHHHHHHhccccCC--------------CCchHHHHHHHhhHH---HHHHHHHHhCCccccchhHHHHHHHHHH
Confidence 5 6666666665321 111 112 23334444333 6666666666666677777777777766
Q ss_pred c
Q 004575 309 L 309 (744)
Q Consensus 309 L 309 (744)
.
T Consensus 219 v 219 (838)
T KOG2073|consen 219 V 219 (838)
T ss_pred H
Confidence 5
No 35
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=57.39 E-value=17 Score=26.08 Aligned_cols=30 Identities=10% Similarity=0.181 Sum_probs=25.4
Q ss_pred cHHHHHHHHcCCChhhhHHHHHHHHHHHhc
Q 004575 235 IFDIVTDALQSQDKKLVLTGTDILILFLNQ 264 (744)
Q Consensus 235 Ll~vi~~~L~~~d~~ir~~atDILi~iie~ 264 (744)
|++.+-..+++++..+|.+|+.-|..|.++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 567888899999999999999999888765
No 36
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.81 E-value=5.4e+02 Score=32.52 Aligned_cols=113 Identities=27% Similarity=0.435 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHhcCCccchhHHhhhhHHHHHHHhh---c--ccchhHHHHHHHHHHHHHccChhHHHHHHHhhCcHHH
Q 004575 364 ILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLT---R--RREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKP 438 (744)
Q Consensus 364 ll~~l~ELL~Fcv~~H~yriK~~~l~~nll~kVl~Ll---~--~~~K~L~LaALRFlR~iI~lkDefy~ryiIk~nLf~P 438 (744)
+-..|||+.+..++--.--++. +.++.+.-+-.|+ . .|.-.|+-.|+.|+-+++..+ .|-.++...+++.-
T Consensus 263 lka~ICEi~~LY~~kYeEef~~--fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~--~y~~~F~~~~vl~~ 338 (960)
T KOG1992|consen 263 LKAQICEIFNLYATKYEEEFQP--FLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRP--HYAELFEGENVLAQ 338 (960)
T ss_pred HHHHHHHHHHHHHHhhHHHHHh--hHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhh--hhHhhhcchHHHHH
Confidence 4467899999877654433332 1233333232232 2 345669999999999998765 56667777777777
Q ss_pred HHHHHHHhCCCCc-chhHHHHHHH-----HHHHh-----------hchHHHHHHHHHHHHhhh
Q 004575 439 IVDAFVANGNRYN-LLNSAVLELF-----EYIRK-----------ENLKSLVKYIVDSFWNQL 484 (744)
Q Consensus 439 Vl~~f~~ng~R~N-LlnSA~LELf-----EfIr~-----------eNik~Li~hlve~y~~~l 484 (744)
|.+..+-- | .+--.--|+| ||||+ .-.-.|+++|.++|..+.
T Consensus 339 i~e~Vvlp----N~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~v 397 (960)
T KOG1992|consen 339 ICEKVVLP----NLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQV 397 (960)
T ss_pred HHHhhccc----ccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchh
Confidence 77655311 1 1222334554 68876 334578888888885443
No 37
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=54.74 E-value=1.9e+02 Score=35.17 Aligned_cols=116 Identities=16% Similarity=0.271 Sum_probs=77.0
Q ss_pred cHHHHHHHHHHHHHHHhcCCccchhHHhhhhHHHHHHHhhcccchhHHHHHHHHHHHHHccChhHHHHHHHhhCcHHHHH
Q 004575 361 KPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIV 440 (744)
Q Consensus 361 ~~~ll~~l~ELL~Fcv~~H~yriK~~~l~~nll~kVl~Ll~~~~K~L~LaALRFlR~iI~lkDefy~ryiIk~nLf~PVl 440 (744)
+..+++-||-|+ +.--++ |..|+.+|.+.++..++..++.-++-.+++++|...-..|+-..-..-+ .++.-.+
T Consensus 436 ~~~~lgai~NlV---mefs~~--kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~-ki~a~~i 509 (678)
T KOG1293|consen 436 MGITLGAICNLV---MEFSNL--KSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLA-KIPANLI 509 (678)
T ss_pred HHHHHHHHHHHH---hhcccH--HHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHH-HhhHHHH
Confidence 445556555543 233344 5679999999999999999999999999999999988777665443332 3444444
Q ss_pred HHHHHhCCCCcchhHHHHHHHHHHHh--hchHHHHHHHHHHHHhhhccc
Q 004575 441 DAFVANGNRYNLLNSAVLELFEYIRK--ENLKSLVKYIVDSFWNQLVNF 487 (744)
Q Consensus 441 ~~f~~ng~R~NLlnSA~LELfEfIr~--eNik~Li~hlve~y~~~l~~i 487 (744)
..|..+.+- -+--.|+-+ .|. -|-..-+.||++.|.+.+.++
T Consensus 510 ~~l~nd~d~--~Vqeq~fql---lRNl~c~~~~svdfll~~~~~~ld~i 553 (678)
T KOG1293|consen 510 LDLINDPDW--AVQEQCFQL---LRNLTCNSRKSVDFLLEKFKDVLDKI 553 (678)
T ss_pred HHHHhCCCH--HHHHHHHHH---HHHhhcCcHHHHHHHHHhhhHHHHHH
Confidence 445444332 233334333 343 356788999999998887553
No 38
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=54.39 E-value=3.6e+02 Score=30.30 Aligned_cols=193 Identities=13% Similarity=0.173 Sum_probs=116.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHcCCChhhhHHHHHHHHHHHhcChHH----HHHHHHhccCCCcHHHHHHHHhhcCCcchH
Q 004575 223 QLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNL----LRSYVVRQEGIPLLGLLVKGMITDFGEDMH 298 (744)
Q Consensus 223 r~~lfk~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~iie~dPsl----vR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~ 298 (744)
-.+++..+.++|++..+-..|..=+-..|--++.|+..++-+.+.. ...|+.++ ..-++..|+++-. ++.+.
T Consensus 65 v~qLa~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~---~~dia 140 (335)
T PF08569_consen 65 VAQLAQEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYE---NPDIA 140 (335)
T ss_dssp HHHHHHHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGG---STTTH
T ss_pred HHHHHHHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhc---Ccccc
Confidence 3678999999999999999999989999999999999888776432 35676653 0236666665432 33344
Q ss_pred HHHHHHHHHhcCCCCCChhhHHHHH-HHHHHHHHHHHHHHHHhcCCccccccccCCCCCcCCCcHHHHHHHHHHHHHHHh
Q 004575 299 CQFLEILRSLLDSYTLSGAQRDTII-EIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVL 377 (744)
Q Consensus 299 ~Ql~eaLk~LLDp~~m~~~ekd~fL-~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~ 377 (744)
.-..++||..+--+. +. -.+|..+...+|+.+..+ ...+ .+..+.-+-|||+
T Consensus 141 l~~g~mlRec~k~e~--------l~~~iL~~~~f~~ff~~~~~~------------~Fdi---asdaf~t~~~llt---- 193 (335)
T PF08569_consen 141 LNCGDMLRECIKHES--------LAKIILYSECFWKFFKYVQLP------------NFDI---ASDAFSTFKELLT---- 193 (335)
T ss_dssp HHHHHHHHHHTTSHH--------HHHHHHTSGGGGGHHHHTTSS------------SHHH---HHHHHHHHHHHHH----
T ss_pred chHHHHHHHHHhhHH--------HHHHHhCcHHHHHHHHHhcCC------------ccHh---HHHHHHHHHHHHh----
Confidence 455566665442111 11 112333333344432211 1111 2233445555554
Q ss_pred cCCccchhHHhhh--hHHHHHHHhhcccchhHHHHHHHHHHHHHcc--ChhHHHHHHHhhCcHHHHHHHHHHh
Q 004575 378 HHPYRIKCNFLLN--NVVDKVLLLTRRREKYLVVAAVRFVRTILSR--HDEHLINHFVKNNLLKPIVDAFVAN 446 (744)
Q Consensus 378 ~H~yriK~~~l~~--nll~kVl~Ll~~~~K~L~LaALRFlR~iI~l--kDefy~ryiIk~nLf~PVl~~f~~n 446 (744)
.|.--...|+..| ......-.|+.+.+=.-+.-+||++..++.- +=.+..||+-..+-+.-||.++.+.
T Consensus 194 ~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~ 266 (335)
T PF08569_consen 194 RHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK 266 (335)
T ss_dssp SSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc
Confidence 3554444444433 2566777899998888899999999999853 3456679999999999998877543
No 39
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=53.99 E-value=2.3e+02 Score=29.16 Aligned_cols=155 Identities=20% Similarity=0.220 Sum_probs=97.7
Q ss_pred hhhHHHHHHHHHHHhc-ChHHHHHHHHh----c------cCCCcHHHHHHHHhhcCCcchHHHHHHHHHHhcCCCCCCh-
Q 004575 249 KLVLTGTDILILFLNQ-DPNLLRSYVVR----Q------EGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSG- 316 (744)
Q Consensus 249 ~ir~~atDILi~iie~-dPslvR~~i~~----q------e~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk~LLDp~~m~~- 316 (744)
++|..|.-.|..++.+ ++-.+-+|... . ...+|+.. ++.|.++..+.-...++..|||....--
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~----il~Dp~~kvR~aA~~~l~~lL~gsk~~L~ 76 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTC----ILKDPSPKVRAAAASALAALLEGSKPFLA 76 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHH----HHcCCchhHHHHHHHHHHHHHHccHHHHH
Confidence 4789999999999999 88777777543 1 11245554 4579999888888999999998642100
Q ss_pred -h-----hHHHHHHHHHHHHHHHHHH---HHHhcCCccccccccCCCCCcCCCcHHHHHHHHHHHHHHHhcCCccchhHH
Q 004575 317 -A-----QRDTIIEIFYEKHLGQLID---VITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNF 387 (744)
Q Consensus 317 -~-----ekd~fL~~FY~~~~~~L~~---pL~~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~yriK~~~ 387 (744)
+ .+..|..+.- .....+++ -|... +. .-....++.+++.-|.-.|+.-+|+-=.-=
T Consensus 77 ~Ae~~~~~~~sFtslS~-tLa~~i~~lH~~Ll~~-----L~---------~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ 141 (182)
T PF13251_consen 77 QAEESKGPSGSFTSLSS-TLASMIMELHRGLLLA-----LQ---------AEKSPPVLTQLLKCLAVLVQATPYHRLPPG 141 (182)
T ss_pred HHHhcCCCCCCcccHHH-HHHHHHHHHHHHHHHH-----Hh---------cccccHHHHHHHHHHHHHHccCChhhcCHh
Confidence 0 1112332211 11111111 11100 00 112455788999999999999998632223
Q ss_pred hhhhHHHHHHHhhcccchhHHHHHHHHHHHHHccC
Q 004575 388 LLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRH 422 (744)
Q Consensus 388 l~~nll~kVl~Ll~~~~K~L~LaALRFlR~iI~lk 422 (744)
+...++..|..++..++.-.+++|+=+|-.+++..
T Consensus 142 ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 142 LLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 33445566666888899999999999999888764
No 40
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=52.45 E-value=99 Score=35.74 Aligned_cols=215 Identities=26% Similarity=0.392 Sum_probs=109.0
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHhcCCh----hhHHHHHHH---HHHHHhcCChhhHHh-hhcc------hhHhHHhhhc
Q 004575 34 LTELILNDQDFFRKLMDLFRICEDLENI----DGLHMIFKI---IKGIILLNSPQIFEK-IFGD------ELMMDIIGSL 99 (744)
Q Consensus 34 l~~~Il~~~~YI~KLl~LF~~cEdlenl----e~Lh~L~~I---vK~IilLNd~~I~E~-llsD------e~i~~VVG~L 99 (744)
+|+-.+ |+.||-||++||+. ||-.-- .-||++|-= -|..|-.--+.||=. ++.- .-+++++|..
T Consensus 169 vaK~yi-d~~FvlkLLdLFdS-EDpRERe~LKT~LhrIygKfl~~r~firk~iNNif~~FIyEte~hnGIaELLEIlgSi 246 (457)
T KOG2085|consen 169 VAKKYI-DQKFVLKLLDLFDS-EDPREREFLKTILHRIYGKFLVHRPFIRKSINNIFLRFIYETERHNGIAELLEILGSI 246 (457)
T ss_pred HHHHHh-hHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHhhcchhhhhcccccccCCHHHHHHHHHHh
Confidence 444333 57999999999963 443333 345665541 122222222333222 2222 2367888888
Q ss_pred ccCCCCCCccchHHHhhhcCCceeeeecCChHHHHHHHhhhhcceeeehhcccccc-hhhHHhHHHHHHhhHHHHHHHhh
Q 004575 100 EYDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLD-EATVANLNSIIHGNNAYVVSLLK 178 (744)
Q Consensus 100 EYDPe~p~~~nHR~fL~~~akFKEVIPI~d~~i~~KIHqTYRLqYLKDVVLaR~LD-D~t~s~LnS~IffNqveIV~~Lq 178 (744)
.--=++|-+..|.-||..- +||+.-+-=..--|| +|- .+...|++ |+.+.-. -|-.+|+
T Consensus 247 IngfAlPlKEEhkiFL~rv-----LipLhk~k~l~~yh~-----QLa-YcivQfveKd~kl~~~---------VIrglLK 306 (457)
T KOG2085|consen 247 INGFALPLKEEHKLFLVRV-----LIPLHKPKSLSLYHK-----QLA-YCIVQFVEKDPKLTET---------VIRGLLK 306 (457)
T ss_pred cCcccCcchhHHHHHHHHh-----hhccccCCCcccccc-----ccc-eeeeeeeccCccccHH---------HHHHHHH
Confidence 8888888888999999752 344432110111111 010 01111111 1111111 0222222
Q ss_pred --------cChHHHHHHHHHhCCCCCCHHhHHHHHHHHHHH--HHhhhccChHhHHHHH------HHHHhc---CcHHHH
Q 004575 179 --------DDSTFIQELFARLRSPTTLEESKKNLVHFLHEF--CGLSKSLQMVQQLRLF------RDLMNE---GIFDIV 239 (744)
Q Consensus 179 --------~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~--c~~sK~LQ~~~r~~lf------k~Lv~~---GLl~vi 239 (744)
..-.||.||=.+|+--+.+.-.|... -..+|+ |--|-+.|...|.-+| ..|+.. -+++++
T Consensus 307 ~WP~tnS~KEVmFL~ElEEILe~iep~eFqk~~~-PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~~~ilPii 385 (457)
T KOG2085|consen 307 YWPKTNSSKEVMFLNELEEILEVIEPSEFQKIMV-PLFRQIARCVSSPHFQVAERALYLWNNEYIRSLISQNAEVILPIV 385 (457)
T ss_pred hcCCCCCcceeeeHhhHHHHHHhcCHHHHHHHhH-HHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhccceeeehh
Confidence 11136777666665433333233333 333443 3335567777776555 345543 356666
Q ss_pred HHHHc-----CCChhhhHHHHHHHHHHHhcChHHHHH
Q 004575 240 TDALQ-----SQDKKLVLTGTDILILFLNQDPNLLRS 271 (744)
Q Consensus 240 ~~~L~-----~~d~~ir~~atDILi~iie~dPslvR~ 271 (744)
-.+|- +=+..+..+...++-+++|.||.+.-.
T Consensus 386 FpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~~LFee 422 (457)
T KOG2085|consen 386 FPALYRNSKSHWNQAIHNLILNVLKTFMEMDPKLFEE 422 (457)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 55552 335667778888888888888876544
No 41
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=52.00 E-value=4e+02 Score=32.19 Aligned_cols=165 Identities=18% Similarity=0.237 Sum_probs=89.7
Q ss_pred HHhHHHHHHhhHHHHHHHhhcChHHHHHHHHHhCCC----CCCHHhHH------HHHHHHHHHHHhhhccChHhHHHHHH
Q 004575 159 VANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSP----TTLEESKK------NLVHFLHEFCGLSKSLQMVQQLRLFR 228 (744)
Q Consensus 159 ~s~LnS~IffNqveIV~~Lq~d~~FL~eLF~~l~~~----~~~~e~rr------d~v~FL~E~c~~sK~LQ~~~r~~lfk 228 (744)
+..++--+.+|..++..-+..+..|+.--=..+... .+...++. -.+.||+ +|+++.- .+=.
T Consensus 354 llll~~~ll~n~~e~~~~~~~nq~fI~a~~~~~e~~t~~~~~~vn~~~d~l~~~a~~l~Lk---S~SrSV~-----~LRT 425 (743)
T COG5369 354 LLLLTPELLFNMYELTAGLEENQRFIAARSKMIESVTGTFKTKVNRKQDDLDFVAIVLFLK---SMSRSVT-----FLRT 425 (743)
T ss_pred hhhcCHHHHHhHHHHhhhhhhhhhhhHHHHHHHHhhhhhhhccCCccchHHHHHHHHHHHH---HhhHHHH-----HHHh
Confidence 344677788999999887777767765322222111 11111111 1233332 2333221 1223
Q ss_pred HHHhcCcHHHHHHHHcCCChhhhHH-HHHHHHHHHhcChHHHHHHHHhccCCCcHHHHHHHHhhcCCcchHHHHHHHHHH
Q 004575 229 DLMNEGIFDIVTDALQSQDKKLVLT-GTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRS 307 (744)
Q Consensus 229 ~Lv~~GLl~vi~~~L~~~d~~ir~~-atDILi~iie~dPslvR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk~ 307 (744)
.|.+..+-..+-.+|++++-.|... ..+|..-++..+| +|+..++ ..+|++|++. +..++.+|+..-.=.+|.
T Consensus 426 gL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsn--L~~~fL~---~~iIdvl~~~-v~sKDdaLqans~wvlrH 499 (743)
T COG5369 426 GLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSN--LGAGFLE---KSIIDVLVNL-VMSKDDALQANSEWVLRH 499 (743)
T ss_pred hccccchHHHHHHHhcCccceeeccchhhhhheeeeccc--hHHHHHH---hhHHHHHHHH-hhcchhhhhhcchhhhhh
Confidence 4666666777778888866665443 3355556677777 5777665 5688888874 556677777655556666
Q ss_pred hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 004575 308 LLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASC 342 (744)
Q Consensus 308 LLDp~~m~~~ekd~fL~~FY~~~~~~L~~pL~~~~ 342 (744)
|+ -+.++.+=+++.-+-.+..++....++|
T Consensus 500 lm-----yncq~~ekf~~Lakig~~kvl~~~NDpc 529 (743)
T COG5369 500 LM-----YNCQKNEKFKFLAKIGVEKVLSYTNDPC 529 (743)
T ss_pred hh-----hcCcchhhhhhHHhcCHHHHHHHhcCcc
Confidence 53 2333333333333445666655544443
No 42
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=51.65 E-value=4.5e+02 Score=30.64 Aligned_cols=221 Identities=13% Similarity=0.145 Sum_probs=114.9
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHH--hcCcHHHHHHHHcCCChhhhHHHHHHH
Q 004575 181 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLM--NEGIFDIVTDALQSQDKKLVLTGTDIL 258 (744)
Q Consensus 181 ~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~~sK~LQ~~~r~~lfk~Lv--~~GLl~vi~~~L~~~d~~ir~~atDIL 258 (744)
+.+..-++..+.. ....+-.+-++.++-+++.- .++|..+|..-. +...+...-..|..+|.-|...+.-+|
T Consensus 52 ~~y~~~~l~ll~~-~~~~d~vqyvL~Li~dll~~-----~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iL 125 (429)
T cd00256 52 GQYVKTFVNLLSQ-IDKDDTVRYVLTLIDDMLQE-----DDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSIL 125 (429)
T ss_pred HHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHh-----chHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHH
Confidence 3455555555543 22233444455556666653 345555554331 233444444477888999999999999
Q ss_pred HHHHhcChHHHHHHHHhccCCCcHHHHHHHHhhcCCcchHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHH-HHHHHHHH
Q 004575 259 ILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEK-HLGQLIDV 337 (744)
Q Consensus 259 i~iie~dPslvR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk~LLDp~~m~~~ekd~fL~~FY~~-~~~~L~~p 337 (744)
..++.+++...-... ...+++.|+.++-...+.+.+...+..|..||-... .|. .|.+. +++.|++.
T Consensus 126 t~l~~~~~~~~~~~~----l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~----~R~----~f~~~~~v~~L~~~ 193 (429)
T cd00256 126 AKLACFGLAKMEGSD----LDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE----YRF----AFVLADGVPTLVKL 193 (429)
T ss_pred HHHHhcCccccchhH----HHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch----HHH----HHHHccCHHHHHHH
Confidence 999988774211110 012445666655432234445445566666664321 232 33322 45556665
Q ss_pred HHhcCCccccccccCCCCCcCCCcHHHHHH---HHHHHHHHHhcCCccchhHHhhhhHHHHHHHhhc--ccchhHHHHHH
Q 004575 338 ITASCPQEGIAQSASSGGRVESTKPEILSN---ICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTR--RREKYLVVAAV 412 (744)
Q Consensus 338 L~~~~p~~~~~~~~~~~~~v~~~~~~ll~~---l~ELL~Fcv~~H~yriK~~~l~~nll~kVl~Ll~--~~~K~L~LaAL 412 (744)
|.... ...+++.+ .+=+|+|.-. .-...-..+++..++.+++ .|+|..++ ++
T Consensus 194 L~~~~-----------------~~~Ql~Y~~ll~lWlLSF~~~-----~~~~~~~~~~i~~l~~i~k~s~KEKvvRv-~l 250 (429)
T cd00256 194 LSNAT-----------------LGFQLQYQSIFCIWLLTFNPH-----AAEVLKRLSLIQDLSDILKESTKEKVIRI-VL 250 (429)
T ss_pred Hhhcc-----------------ccHHHHHHHHHHHHHHhccHH-----HHHhhccccHHHHHHHHHHhhhhHHHHHH-HH
Confidence 43210 12233222 2233444332 1122233467777766544 58899887 56
Q ss_pred HHHHHHHccC-----hhHHHHHHHhhCcHHHHHHHH
Q 004575 413 RFVRTILSRH-----DEHLINHFVKNNLLKPIVDAF 443 (744)
Q Consensus 413 RFlR~iI~lk-----Defy~ryiIk~nLf~PVl~~f 443 (744)
-.||+++... -..+.--|+..++.. ++..+
T Consensus 251 ~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L 285 (429)
T cd00256 251 AIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSL 285 (429)
T ss_pred HHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHH
Confidence 7889999864 234555566666643 44433
No 43
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=49.64 E-value=6.5e+02 Score=31.91 Aligned_cols=243 Identities=18% Similarity=0.226 Sum_probs=130.3
Q ss_pred ccCcCChHHHH---HHHHhcCcchHHHHHHHHhccHHHHHHHHHHH-HHHHhcCChhhHHHHHHHHHHHHhcCChhhHHh
Q 004575 10 PIELSTLPLIL---KTVTESGIADQMRLTELILNDQDFFRKLMDLF-RICEDLENIDGLHMIFKIIKGIILLNSPQIFEK 85 (744)
Q Consensus 10 ~~eL~nL~eI~---~~i~~~s~~~~~rl~~~Il~~~~YI~KLl~LF-~~cEdlenle~Lh~L~~IvK~IilLNd~~I~E~ 85 (744)
.++...|++++ +++.+. ...-.++..++.+ ++=+.+|+... ++-+..++.+--..+-+|..-|+-+.-..|-+.
T Consensus 18 ~~~~~~l~elldeed~~~e~-~~~n~~l~~~l~~-~e~~~~l~~~I~~e~~~d~D~k~~f~~p~i~~Eilt~dv~~I~~~ 95 (838)
T KOG2073|consen 18 EKESDTLDELLDEEDILQEC-KLQNSKLLNFLKR-PEVLEKLVEYIIEEPEEDADKKTRFKYPNISCEILTSDVWPISEA 95 (838)
T ss_pred ccchhHHHHhhhhHHHHHHH-HhhHHHHHHHHhh-HHHHHHHHhhhhcCCCcccchhhhhccccHHHHHHhcCcHHHHHH
Confidence 45666777773 233222 2223344445443 67777777754 333333444433444468889999999999999
Q ss_pred hhcchhHhH-HhhhcccCCCCCCccchHHHhhhcCCceeeeecC-ChHHHH--HHHhhhhcceeeehhcccccchhhHHh
Q 004575 86 IFGDELMMD-IIGSLEYDPDVPHVQHHRNFLKEHVVFKEAIPIR-DPLVLS--KIHQTYRVGYLKDVVLARVLDEATVAN 161 (744)
Q Consensus 86 llsDe~i~~-VVG~LEYDPe~p~~~nHR~fL~~~akFKEVIPI~-d~~i~~--KIHqTYRLqYLKDVVLaR~LDD~t~s~ 161 (744)
+++|+-.+. .-++|+..|..+-...-+ |++=. +....+ -..+.. |=|+.+=-++|+=+--+.++| -.+..
T Consensus 96 l~~de~ll~~l~s~l~~~~pln~~l~s~-F~k~~----~~Ll~~k~~~~~~f~k~~~~~v~~~l~hi~~stlMD-~Llkl 169 (838)
T KOG2073|consen 96 LVEDESLLSLLYSILEHEPPLNPLLSSF-FSKIN----SRLLDRKTEQILEFIKKKDNFVDLFLKHIDISTLMD-FLLKL 169 (838)
T ss_pred HhccHHHHHHHHHHhcCCCcccchhHHH-HHHHH----HHHHhcchHHHHHHHHhhhHHHHHHHHHcCccHHHH-HHHHh
Confidence 999986555 778887775444321110 22110 000000 012222 223333333333332222221 11111
Q ss_pred HHH--HHHhhHHHHHHHhhcChHHHHHHHHHhCCCCCCHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcH-HH
Q 004575 162 LNS--IIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIF-DI 238 (744)
Q Consensus 162 LnS--~IffNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~~sK~LQ~~~r~~lfk~Lv~~GLl-~v 238 (744)
+.. .-+-| .+||++|.+ ...++.|...+.++.. .+....+-.||+.+..++.+...+. .|-++|+.-+-+ ..
T Consensus 170 i~~de~~~p~-~~Viq~l~d-~~li~kll~ll~ps~~-~~~qsna~~~L~~iv~~s~~~~gPn--~L~~qL~s~e~ieqL 244 (838)
T KOG2073|consen 170 ISTDEPESPR-TDVIQWLND-QELIPKLLELLNPSKD-PDVQSNAGQTLCAIVRLSRNQPGPN--PLTKQLESPETIEQL 244 (838)
T ss_pred ccccCCCCch-HHHHHHHhh-HHHHHHHHHHhCCccc-cchhHHHHHHHHHHHhcccccCCCC--HHHHhhcCHHHHHHH
Confidence 100 01223 789999974 7899999999986554 6777888899999999987766333 356667655432 23
Q ss_pred HHHHHcC-CChhhhHHHHHHHHHHHhcC
Q 004575 239 VTDALQS-QDKKLVLTGTDILILFLNQD 265 (744)
Q Consensus 239 i~~~L~~-~d~~ir~~atDILi~iie~d 265 (744)
+..+|.. .-....+.++-.+++.++-+
T Consensus 245 l~~ml~~~~s~s~lVs~i~vlI~ll~~~ 272 (838)
T KOG2073|consen 245 LKIMLEDGTSLSVLVSGIIVLISLLNPR 272 (838)
T ss_pred HHHHccCCcchhhHHHHHHHHHHhcCcc
Confidence 3444442 22334445555555555433
No 44
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.23 E-value=7.2e+02 Score=31.99 Aligned_cols=143 Identities=19% Similarity=0.218 Sum_probs=80.9
Q ss_pred HHcCCChhhhHHHHHHHHHHHh---cChHHHHHHHHhccCCCcHHHHHHHHhhcCCcchHHHHHHHHHHhcCCCCCChhh
Q 004575 242 ALQSQDKKLVLTGTDILILFLN---QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQ 318 (744)
Q Consensus 242 ~L~~~d~~ir~~atDILi~iie---~dPslvR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk~LLDp~~m~~~e 318 (744)
.++++---+|.-||+++..+-+ .||+.+++. +.+..+.|.+|..-.++.+.+-||+.++-... +
T Consensus 470 ~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~a---------le~t~~~l~~d~~lPV~VeAalALq~fI~~~~----~ 536 (1010)
T KOG1991|consen 470 EFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEA---------LELTHNCLLNDNELPVRVEAALALQSFISNQE----Q 536 (1010)
T ss_pred hhcCchhHHHHHHHHHHHHHHhccCCChHHHHHH---------HHHHHHHhccCCcCchhhHHHHHHHHHHhcch----h
Confidence 3466666779999999987753 456655553 44566777778888889999999999986532 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCcCCCcHHHHHHHHHHHHHHHhcCCccchhHHhhhhHHHHHHH
Q 004575 319 RDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLL 398 (744)
Q Consensus 319 kd~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~yriK~~~l~~nll~kVl~ 398 (744)
.++.+. .|++..++-|+.- .+.+ ....+=.-+-+++|.+-++=+..-. =+-+++.+-.++
T Consensus 537 ~~e~~~----~hvp~~mq~lL~L------~ne~--------End~Lt~vme~iV~~fseElsPfA~--eL~q~La~~F~k 596 (1010)
T KOG1991|consen 537 ADEKVS----AHVPPIMQELLKL------SNEV--------ENDDLTNVMEKIVCKFSEELSPFAV--ELCQNLAETFLK 596 (1010)
T ss_pred hhhhHh----hhhhHHHHHHHHH------HHhc--------chhHHHHHHHHHHHHHHHhhchhHH--HHHHHHHHHHHH
Confidence 223333 3344444443321 1110 1112222334456666666553221 244667666666
Q ss_pred hhcc--------cchhHHHHHHHHHHHHH
Q 004575 399 LTRR--------REKYLVVAAVRFVRTIL 419 (744)
Q Consensus 399 Ll~~--------~~K~L~LaALRFlR~iI 419 (744)
++.. -+| .++|+-|+|+|.
T Consensus 597 ~l~~~~~~~~~~ddk--~iaA~GiL~Ti~ 623 (1010)
T KOG1991|consen 597 VLQTSEDEDESDDDK--AIAASGILRTIS 623 (1010)
T ss_pred HHhccCCCCccchHH--HHHHHHHHHHHH
Confidence 5552 234 456777777763
No 45
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.99 E-value=1.8e+02 Score=36.49 Aligned_cols=110 Identities=16% Similarity=0.253 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCcCCCcHHHHHHHHHHHHHHHhcCCccchhHHhhhhHHHHHH
Q 004575 318 QRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVL 397 (744)
Q Consensus 318 ekd~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~yriK~~~l~~nll~kVl 397 (744)
++.+.++-|-...++.|+++..+.. +..|++ --|.-|..|++|.- .--|+--+-++++-..++
T Consensus 544 nqpel~q~F~~~llpVLveVYsSsA-----------~~~VR~---kcL~Ailrlvy~s~---seli~slLk~~~vSS~lA 606 (1051)
T KOG0168|consen 544 NQPELLQSFGKDLLPVLVEVYSSSA-----------NPDVRY---KCLSAILRLVYFSN---SELIGSLLKNTNVSSHLA 606 (1051)
T ss_pred cCHHHHHHHHHHHHHHHHHHHhccC-----------CchhhH---HHHHHHHHHHhhCC---HHHHHHHHhcchHHHHHH
Confidence 3446778888788899998875541 112221 23556667666643 112232222345556666
Q ss_pred HhhcccchhHHHHHHHHHHHHHccChhHHHHHHHhhCcHHHHHHHHH
Q 004575 398 LLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFV 444 (744)
Q Consensus 398 ~Ll~~~~K~L~LaALRFlR~iI~lkDefy~ryiIk~nLf~PVl~~f~ 444 (744)
-++.+++..+++.||...--++..==+.|-.|+++.++|.-|-.+..
T Consensus 607 G~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 607 GMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred hhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence 78899999999999998777765444566678899999998887776
No 46
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=43.18 E-value=5e+02 Score=28.70 Aligned_cols=174 Identities=18% Similarity=0.208 Sum_probs=101.8
Q ss_pred HHHHHHHHhcCcHHHHHHHHcCCChhhhHHHHHHHHHHHhcCh-HHHHHHHHhcc--CCCcHHHHHHH---HhhcCC---
Q 004575 224 LRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDP-NLLRSYVVRQE--GIPLLGLLVKG---MITDFG--- 294 (744)
Q Consensus 224 ~~lfk~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~iie~dP-slvR~~i~~qe--~~~Ll~lLi~~---ll~D~~--- 294 (744)
..+.+++++.- ++.|..+|+.....+...+.-+|..|+.++. .+.|..+-.-+ -..|-.++... ...+.+
T Consensus 47 ~~l~~~iL~~~-~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~ 125 (330)
T PF11707_consen 47 LELIRSILQNH-LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSK 125 (330)
T ss_pred HHHHHHHHHHH-HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccc
Confidence 45788888776 8999999999998888899999999999554 66666433211 01122221100 000000
Q ss_pred --cchHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCcCCCcHHHHHHHHHHH
Q 004575 295 --EDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELL 372 (744)
Q Consensus 295 --~gL~~Ql~eaLk~LLDp~~m~~~ekd~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL 372 (744)
+.++..+..-+-.+|...+ ..-+.++|+.-. ++..++... ..-.+++...+++.|
T Consensus 126 ~~~siR~~fI~F~Lsfl~~~~--~~~~~~lL~~~~------~~~~l~k~l---------------~~D~~~~v~~iL~~l 182 (330)
T PF11707_consen 126 SKPSIRTNFIRFWLSFLSSGD--PELKRDLLSQKK------LMSALFKGL---------------RKDPPETVILILETL 182 (330)
T ss_pred cCcCHHHHHHHHHHHHHccCC--HHHHHHHHHcCc------hHHHHHhcc---------------cCCCHHHHHHHHHHH
Confidence 1344444444444443221 112223332211 122222111 111445667778877
Q ss_pred HHHHhcCC---ccchhHHhhhhHHHHHHHhhcccch----hHHHHHHHHHHHHHcc
Q 004575 373 CFCVLHHP---YRIKCNFLLNNVVDKVLLLTRRREK----YLVVAAVRFVRTILSR 421 (744)
Q Consensus 373 ~Fcv~~H~---yriK~~~l~~nll~kVl~Ll~~~~K----~L~LaALRFlR~iI~l 421 (744)
.=.|-+.+ ...|..++++..+.+++.|-...+. -++=.|-+||..++.-
T Consensus 183 ~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 183 KDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred HHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcC
Confidence 76565555 5678889999999999998887777 7788888888887653
No 47
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=42.97 E-value=2.4e+02 Score=33.26 Aligned_cols=192 Identities=17% Similarity=0.160 Sum_probs=108.2
Q ss_pred HHHHHHHHHHhcCChhh--HHhhhc---chhHhHHhhhcccCCCCCCccchHHHhhhcCCceeeeecCChHHHHHH----
Q 004575 66 MIFKIIKGIILLNSPQI--FEKIFG---DELMMDIIGSLEYDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKI---- 136 (744)
Q Consensus 66 ~L~~IvK~IilLNd~~I--~E~lls---De~i~~VVG~LEYDPe~p~~~nHR~fL~~~akFKEVIPI~d~~i~~KI---- 136 (744)
.++.-+++++-+|..++ .+-++. -+..+++.|.---|+..|.+..-++=. ....-+.-.|+..|+...++
T Consensus 168 ~v~s~l~~~~~~n~a~fss~~d~l~p~~rD~~~~~~~~n~~~~~~~~~~a~~e~~-~~~~n~~~~~~~~P~~~~~~~~~~ 246 (516)
T KOG2956|consen 168 HVESSLCSLFALNNADFSSLFDLLNPEKRDWAYDSLQSNGIDNGSPSPSAEKERF-DSSNNKPSLPLSPPEEEKPGLGST 246 (516)
T ss_pred HHHHHHHHHHHHHhhchHhhhhccChhhhhhHHHHHHhhCcCCCCCCchhhhccc-ccccccccccCCChhhcccCCCcc
Confidence 46667777777774332 222232 235777777777888877653111110 11222334445444443332
Q ss_pred ----------Hhhhhcceeeehhcccccchhh-------HHhHHHHHHhh-----------HHHHHHHhhcC-----hH-
Q 004575 137 ----------HQTYRVGYLKDVVLARVLDEAT-------VANLNSIIHGN-----------NAYVVSLLKDD-----ST- 182 (744)
Q Consensus 137 ----------HqTYRLqYLKDVVLaR~LDD~t-------~s~LnS~IffN-----------qveIV~~Lq~d-----~~- 182 (744)
-+++|+-=++.-+..+..|--+ -.+.+-+--++ -.+|..+++++ ++
T Consensus 247 ~~~~~~~~~~n~~~~~~~l~e~~~~~~~~~~~p~~~~~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~ 326 (516)
T KOG2956|consen 247 KVNPEELRLSNETERLSRLEEYSTDDSMDQLTPNSVDQSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQH 326 (516)
T ss_pred ccCccccccccchhhhhhchhhccCcchhhCCCCCcchhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHH
Confidence 2445555555555543332111 01111111111 13477778776 32
Q ss_pred ---HHHHHHHHhCCCCCCHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCChhhhHHHHHHHH
Q 004575 183 ---FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILI 259 (744)
Q Consensus 183 ---FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~~sK~LQ~~~r~~lfk~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi 259 (744)
.|-.+|.++.+.. +.-.|+.+.+.|+++|.- +..-+.+=.+.-+-++++-+-...|..++.++-|-+.
T Consensus 327 f~~iL~~l~EvL~d~~-~~~~k~laLrvL~~ml~~--------Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~ 397 (516)
T KOG2956|consen 327 FAEILLLLLEVLSDSE-DEIIKKLALRVLREMLTN--------QPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLT 397 (516)
T ss_pred HHHHHHHHHHHHccch-hhHHHHHHHHHHHHHHHh--------chHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 3455777777633 345788899999999972 2223334445556677777777888899999999999
Q ss_pred HHHhcChH
Q 004575 260 LFLNQDPN 267 (744)
Q Consensus 260 ~iie~dPs 267 (744)
++-.|+|.
T Consensus 398 ~las~~P~ 405 (516)
T KOG2956|consen 398 TLASHLPL 405 (516)
T ss_pred HHHhhCch
Confidence 99999996
No 48
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=39.12 E-value=1.6e+02 Score=32.12 Aligned_cols=68 Identities=16% Similarity=0.346 Sum_probs=52.0
Q ss_pred HHHhcCCccchhHHhhhhHHHHHHHh-----hcccchhHHHHHHHHHHHHHccChhHHHHHHHhhCcHHHHHHH
Q 004575 374 FCVLHHPYRIKCNFLLNNVVDKVLLL-----TRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDA 442 (744)
Q Consensus 374 Fcv~~H~yriK~~~l~~nll~kVl~L-----l~~~~K~L~LaALRFlR~iI~lkDefy~ryiIk~nLf~PVl~~ 442 (744)
=||-.|+- .|.-|++-.+...+--. -.+++-+|+|+||-.+-+++...|...++|+...++..--+..
T Consensus 104 QcvASHpd-Tr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLri 176 (293)
T KOG3036|consen 104 QCVASHPD-TRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRI 176 (293)
T ss_pred HHHhcCcc-hHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHH
Confidence 47778874 45578887766554433 3356789999999999999999999999999998887554443
No 49
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=38.06 E-value=6.5e+02 Score=28.58 Aligned_cols=64 Identities=19% Similarity=0.392 Sum_probs=48.2
Q ss_pred HHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCChhhhHHHHHHHHHHHhcChHHHHHHHH
Q 004575 206 HFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVV 274 (744)
Q Consensus 206 ~FL~E~c~~sK~LQ~~~r~~lfk~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~iie~dPslvR~~i~ 274 (744)
.+|.-+..+-++... .-+...+-+ |++++-.+|..+|..++..+.++|..+++..|..+-.|+-
T Consensus 342 ~yL~ALs~ll~~vP~---~vl~~~l~~--LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~ 405 (415)
T PF12460_consen 342 NYLTALSHLLKNVPK---SVLLPELPT--LLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS 405 (415)
T ss_pred HHHHHHHHHHhhCCH---HHHHHHHHH--HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 345566666666662 222222222 8899999999999999999999999999999999888764
No 50
>PF12922 Cnd1_N: non-SMC mitotic condensation complex subunit 1, N-term; InterPro: IPR024324 Condensin is a multi-subunit protein complex that acts as an essential regulator of chromosome condensation []. It contains both SMC (structural maintenance of chromosomes) and non-SMC subunits. Condensin plays an important role during mitosis in the compaction and resolution of chromosomes to remove and prevent catenations that would otherwise inhibit segregation. This is thought to be acheived by the introducion of positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. During interphase condensin promotes clustering of dispersed loci into subnuclear domains and inhibits associations between homologues. In meiosis, condensin has been shown to influence the number of crossover events by regulating programmed double-strand breaks. Roles in gene regulation and lymphocyte development have also been defined. Condensin subunit 1 (known as Cnd1 in Schizosaccharomyces pombe (Fission yeast), and XCAP-D2 in Xenopus laevis laevis) represents one of the non-SMC subunits in the complex. This subunit is phosphorylated at several sites by Cdc2. This phosphorylation process increases the supercoiling activity of condensin [, ]. This entry represents the conserved N-terminal domain of Cnd1.
Probab=37.47 E-value=1e+02 Score=30.75 Aligned_cols=64 Identities=20% Similarity=0.283 Sum_probs=38.4
Q ss_pred HHHHHHHHhcCCCC----CChhhHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCcCCCcHHHHHHHHHHHHHH
Q 004575 300 QFLEILRSLLDSYT----LSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFC 375 (744)
Q Consensus 300 Ql~eaLk~LLDp~~----m~~~ekd~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fc 375 (744)
.++++|-.+|+... ...+++++|+++|. +++=.|+. + |. . -....+-..++++||.|
T Consensus 100 ~~L~~l~~~L~l~L~rlw~~~~~~e~Fi~l~~-r~~y~llE---~--~~-----------~--~K~~~ik~~if~il~~~ 160 (171)
T PF12922_consen 100 RILEALIKVLQLDLSRLWRTTPEEEEFISLFT-RPCYKLLE---N--PE-----------I--VKNKSIKDAIFRILGTA 160 (171)
T ss_pred HHHHHHHHHHcCcHHHHcCCCCchHHHHHHHH-HHHHHHHc---C--hH-----------h--hccHHHHHHHHHHHHHH
Confidence 34445555554321 12358999999887 44423332 1 11 0 11345667899999999
Q ss_pred HhcCCcc
Q 004575 376 VLHHPYR 382 (744)
Q Consensus 376 v~~H~yr 382 (744)
|.+|.+-
T Consensus 161 vk~h~h~ 167 (171)
T PF12922_consen 161 VKKHNHA 167 (171)
T ss_pred HHHcccc
Confidence 9999874
No 51
>PF05536 Neurochondrin: Neurochondrin
Probab=37.03 E-value=8e+02 Score=29.33 Aligned_cols=204 Identities=15% Similarity=0.201 Sum_probs=110.4
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcC-------CChhhhHHH
Q 004575 182 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQS-------QDKKLVLTG 254 (744)
Q Consensus 182 ~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~~sK~LQ~~~r~~lfk~Lv~~GLl~vi~~~L~~-------~d~~ir~~a 254 (744)
.=+.+....|+... ++.|.-+..++.-+|. +.......|..+|.++ | ++.+.-.|+. +....+..|
T Consensus 5 ~~l~~c~~lL~~~~--D~~rfagL~lvtk~~~-~~~~~~~~~~~v~~ai---g-~~Fl~RLL~t~~~~~~~~~~~~~~La 77 (543)
T PF05536_consen 5 ASLEKCLSLLKSAD--DTERFAGLLLVTKLLD-ADDEDSQTRRRVFEAI---G-FKFLDRLLRTGSVPSDCPPEEYLSLA 77 (543)
T ss_pred HHHHHHHHHhccCC--cHHHHHHHHHHHHcCC-CchhhHHHHHHHHHhc---C-hhHHHHHhcCCCCCCCCCHHHHHHHH
Confidence 45777888888665 6789999999888887 3333333344455332 4 4666767765 334568889
Q ss_pred HHHHHHHHhcChHHHHHHHHhccCCCcHHHHHHHHhhcCCcchHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHH
Q 004575 255 TDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQL 334 (744)
Q Consensus 255 tDILi~iie~dPslvR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk~LLDp~~m~~~ekd~fL~~FY~~~~~~L 334 (744)
+-||..+.. +|.+.++.=+ ..-+-+|++.+....+.++..-.++.|..+.-. -.| +..|+ ....++.|
T Consensus 78 vsvL~~f~~-~~~~a~~~~~----~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~--~~G--~~aLl---~~g~v~~L 145 (543)
T PF05536_consen 78 VSVLAAFCR-DPELASSPQM----VSRIPLLLEILSSSSDLETVDDALQCLLAIASS--PEG--AKALL---ESGAVPAL 145 (543)
T ss_pred HHHHHHHcC-ChhhhcCHHH----HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC--cHh--HHHHH---hcCCHHHH
Confidence 999988776 7876544311 113445555554444435666666666666511 112 12222 22345555
Q ss_pred HHHHHhcCCccccccccCCCCCcCCCcHHHHHHHHHHHHHHHhcCCccchhHHhhhhHHHHHHHhhcccchhHHHHHHHH
Q 004575 335 IDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRF 414 (744)
Q Consensus 335 ~~pL~~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~yriK~~~l~~nll~kVl~Ll~~~~K~L~LaALRF 414 (744)
++.+... + ..-+...+++..++.-...+... ++.-....++.++.......++-.+..++.|
T Consensus 146 ~ei~~~~-~----------------~~~E~Al~lL~~Lls~~~~~~~~-~~~~~l~~il~~La~~fs~~~~~~kfell~~ 207 (543)
T PF05536_consen 146 CEIIPNQ-S----------------FQMEIALNLLLNLLSRLGQKSWA-EDSQLLHSILPSLARDFSSFHGEDKFELLEF 207 (543)
T ss_pred HHHHHhC-c----------------chHHHHHHHHHHHHHhcchhhhh-hhHHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 5544321 0 11122223333333333333222 2333334555666666666666666677777
Q ss_pred HHHHHccC
Q 004575 415 VRTILSRH 422 (744)
Q Consensus 415 lR~iI~lk 422 (744)
+-.++...
T Consensus 208 L~~~L~~~ 215 (543)
T PF05536_consen 208 LSAFLPRS 215 (543)
T ss_pred HHHhcCcC
Confidence 77766655
No 52
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=37.00 E-value=91 Score=34.93 Aligned_cols=78 Identities=12% Similarity=0.244 Sum_probs=59.2
Q ss_pred hHHhhhhHHHHHHHhhc-ccchhHHHHHHHHHHHHHccChhHHHHHHHhhCcHHHHHHH-HHHhCCC--CcchhHHHHHH
Q 004575 385 CNFLLNNVVDKVLLLTR-RREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDA-FVANGNR--YNLLNSAVLEL 460 (744)
Q Consensus 385 ~~~l~~nll~kVl~Ll~-~~~K~L~LaALRFlR~iI~lkDefy~ryiIk~nLf~PVl~~-f~~ng~R--~NLlnSA~LEL 460 (744)
-|+++++++..+..+-. ....-.+..++||+.++|+.-++- .+...++..||+.+ +...|.. ..-......+|
T Consensus 3 Eyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~p---lL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~l 79 (353)
T PF10257_consen 3 EYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQP---LLPHRSVHRPLQRLLLRSCGESRSASPTEKELVEL 79 (353)
T ss_pred HHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccc---cccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHH
Confidence 38899999999998844 455778899999999999876655 55567999999999 7655543 55666666676
Q ss_pred HHHHH
Q 004575 461 FEYIR 465 (744)
Q Consensus 461 fEfIr 465 (744)
+.-|.
T Consensus 80 L~~lc 84 (353)
T PF10257_consen 80 LNTLC 84 (353)
T ss_pred HHHHH
Confidence 66554
No 53
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=36.56 E-value=5.8e+02 Score=27.54 Aligned_cols=164 Identities=17% Similarity=0.246 Sum_probs=95.7
Q ss_pred HHHHHcCCChhhhHHHHHHHHHHHhcChHHHHHHHHhccCCCcHHHHHHHHhhcCCcchHHHHHHHHHHhcCCCCCChhh
Q 004575 239 VTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQ 318 (744)
Q Consensus 239 i~~~L~~~d~~ir~~atDILi~iie~dPslvR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk~LLDp~~m~~~e 318 (744)
+...|.++|..+|..|+..|..+++.=|.- .+-+++-..|++..+..+ .|. ..++. ...++..|+.-.......
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl-~D~-~~~~~-~l~gl~~L~~~~~~~~~~ 77 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRL-DDH-ACVQP-ALKGLLALVKMKNFSPES 77 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHh-ccH-hhHHH-HHHHHHHHHhCcCCChhh
Confidence 456788999999999999999998877742 222233345777777655 443 23333 367777777433322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCcCCCcHHHHHHHHHHHHHHHhcCCccchhHHhhhhHHHHHHH
Q 004575 319 RDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLL 398 (744)
Q Consensus 319 kd~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~yriK~~~l~~nll~kVl~ 398 (744)
-..+++.++++ +.. .......=..+.+||-+++.+|.--+ .-+..+.+..+++
T Consensus 78 ~~~i~~~l~~~------------~~~-------------q~~~q~~R~~~~~ll~~l~~~~~~~l--~~~~~~fv~~~i~ 130 (262)
T PF14500_consen 78 AVKILRSLFQN------------VDV-------------QSLPQSTRYAVYQLLDSLLENHREAL--QSMGDDFVYGFIQ 130 (262)
T ss_pred HHHHHHHHHHh------------CCh-------------hhhhHHHHHHHHHHHHHHHHHhHHHH--HhchhHHHHHHHH
Confidence 22233332221 100 00111112356788888888876433 2344567777776
Q ss_pred h-hcccchhHHHHHHHHHHHHHccChhHHHHHHHhhCcHHHHHHHH
Q 004575 399 L-TRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAF 443 (744)
Q Consensus 399 L-l~~~~K~L~LaALRFlR~iI~lkDefy~ryiIk~nLf~PVl~~f 443 (744)
+ -..|+.=-.+-+.+.+|.++..=| + .+..+-+++++
T Consensus 131 ~~~gEkDPRnLl~~F~l~~~i~~~~~-------~-~~~~e~lFd~~ 168 (262)
T PF14500_consen 131 LIDGEKDPRNLLLSFKLLKVILQEFD-------I-SEFAEDLFDVF 168 (262)
T ss_pred HhccCCCHHHHHHHHHHHHHHHHhcc-------c-chhHHHHHHHh
Confidence 5 557777777888888888876554 2 44445555554
No 54
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=36.23 E-value=2.5e+02 Score=33.01 Aligned_cols=75 Identities=17% Similarity=0.199 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhhhccC-hHhHHHHHHHHHhcCcHHHHHHH---Hc-CC--ChhhhHHHHHHHHHHHhcChHHHHHHH
Q 004575 201 KKNLVHFLHEFCGLSKSLQ-MVQQLRLFRDLMNEGIFDIVTDA---LQ-SQ--DKKLVLTGTDILILFLNQDPNLLRSYV 273 (744)
Q Consensus 201 rrd~v~FL~E~c~~sK~LQ-~~~r~~lfk~Lv~~GLl~vi~~~---L~-~~--d~~ir~~atDILi~iie~dPslvR~~i 273 (744)
..+.+.+|++.+.-++.=+ ...+..+.++|-+.|.-.++... +. .. ...+|.+|+.-|--+..++|..+|..+
T Consensus 440 ~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l 519 (574)
T smart00638 440 LEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVL 519 (574)
T ss_pred HHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 3566667776665544222 23355677999999876665543 33 22 346899999999989999999999976
Q ss_pred Hh
Q 004575 274 VR 275 (744)
Q Consensus 274 ~~ 275 (744)
+.
T Consensus 520 ~~ 521 (574)
T smart00638 520 LP 521 (574)
T ss_pred HH
Confidence 64
No 55
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=36.22 E-value=5.9e+02 Score=29.13 Aligned_cols=202 Identities=21% Similarity=0.321 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHhcCChhhHHhhhcchhHhHHhhhcccCCCCCCccchHHHhhhcCC
Q 004575 41 DQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEHVV 120 (744)
Q Consensus 41 ~~~YI~KLl~LF~~cEdlenle~Lh~L~~IvK~IilLNd~~I~E~llsDe~i~~VVG~LEYDPe~p~~~nHR~fL~~~ak 120 (744)
+..++.+|+++|+...-.|-.--.-.|++|... ..+....+-.-+.+..+ +|..+..+
T Consensus 131 ~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k--~~~~r~~Ir~~i~~~~~--------------------~fi~e~~~ 188 (409)
T PF01603_consen 131 DQKFIKKLLELFDSPDPRERDYLKTILHRIYGK--FPNLRSFIRKSINNIFY--------------------RFIYETER 188 (409)
T ss_dssp -HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH---TTTHHHHHHHHHHHHH--------------------HHHHTTS-
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHH--------------------HHhcCccc
Q ss_pred ceeeeecCChHHHHHHHhhhh-------cceeeehhcccccchhhHHhHHHHHHhhHHHHHHHhhcChH-----------
Q 004575 121 FKEAIPIRDPLVLSKIHQTYR-------VGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDST----------- 182 (744)
Q Consensus 121 FKEVIPI~d~~i~~KIHqTYR-------LqYLKDVVLaR~LDD~t~s~LnS~IffNqveIV~~Lq~d~~----------- 182 (744)
|.-|-|+ =++...|=..|. .+++..|++|-+--......-..+... +++++..|+.
T Consensus 189 ~~gI~el--Leil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~----~~~f~~kdp~l~~~~i~~llk 262 (409)
T PF01603_consen 189 HNGIAEL--LEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYC----VVQFLEKDPSLAEPVIKGLLK 262 (409)
T ss_dssp -STHHHH--HHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHH----HHHHHHH-GGGHHHHHHHHHH
T ss_pred ccCHHHH--HHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH----HHHHHHhCchhHHHHHHHHHH
Q ss_pred ------------HHHHHHHHhCCCCCCHHhHHHHHHHHHHH--HHhhhccChHhHH------HHHHHHHhcC---cHHHH
Q 004575 183 ------------FIQELFARLRSPTTLEESKKNLVHFLHEF--CGLSKSLQMVQQL------RLFRDLMNEG---IFDIV 239 (744)
Q Consensus 183 ------------FL~eLF~~l~~~~~~~e~rrd~v~FL~E~--c~~sK~LQ~~~r~------~lfk~Lv~~G---Ll~vi 239 (744)
||.++-.++. .....+-..=...+++.+ |--|.|.|...|. ..+-.++... +++++
T Consensus 263 ~WP~t~s~Kev~FL~el~~il~-~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i 341 (409)
T PF01603_consen 263 HWPKTNSQKEVLFLNELEEILE-VLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRVILPII 341 (409)
T ss_dssp HS-SS-HHHHHHHHHHHHHHHT-T--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHH
T ss_pred hCCCCCchhHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHH
Q ss_pred HHHHcCC-----ChhhhHHHHHHHHHHHhcChHHHHH
Q 004575 240 TDALQSQ-----DKKLVLTGTDILILFLNQDPNLLRS 271 (744)
Q Consensus 240 ~~~L~~~-----d~~ir~~atDILi~iie~dPslvR~ 271 (744)
-.+|... +..+|.+|...+-.+.+.||.+...
T Consensus 342 ~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 342 FPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp HHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH
No 56
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.79 E-value=2e+02 Score=32.49 Aligned_cols=97 Identities=20% Similarity=0.215 Sum_probs=64.1
Q ss_pred HhHHHHHHhhHHHHHHHhhcChHHHHHHHHHhCCCCCCHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHH
Q 004575 160 ANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIV 239 (744)
Q Consensus 160 s~LnS~IffNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~~sK~LQ~~~r~~lfk~Lv~~GLl~vi 239 (744)
.+|.+ ++.||..+...+-+. .||+.|+.++.. +.+...|..+ |.-+|++-+|-++- ...|+ .-.| +.++
T Consensus 146 ~Vigt-~~qNNP~~Qe~v~E~-~~L~~Ll~~ls~-~~~~~~r~ka---L~AissLIRn~~~g-~~~fl---~~~G-~~~L 214 (342)
T KOG2160|consen 146 RVIGT-AVQNNPKSQEQVIEL-GALSKLLKILSS-DDPNTVRTKA---LFAISSLIRNNKPG-QDEFL---KLNG-YQVL 214 (342)
T ss_pred HHHHH-HHhcCHHHHHHHHHc-ccHHHHHHHHcc-CCCchHHHHH---HHHHHHHHhcCcHH-HHHHH---hcCC-HHHH
Confidence 34443 356666666655554 499999999984 3344444433 45667777776653 33333 3356 8999
Q ss_pred HHHHcC--CChhhhHHHHHHHHHHHhcChH
Q 004575 240 TDALQS--QDKKLVLTGTDILILFLNQDPN 267 (744)
Q Consensus 240 ~~~L~~--~d~~ir~~atDILi~iie~dPs 267 (744)
..+|++ .+.+.+..++-.+..++.-+++
T Consensus 215 ~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 215 RDVLQSNNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred HHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence 999998 5666777888888888777765
No 57
>PF05505 Ebola_NP: Ebola nucleoprotein; InterPro: IPR008609 This family consists of Ebola virus sp., Lake Victoria marburgvirus nucleoproteins. These proteins are responsible for encapsidation of genomic RNA. It has been found that nucleoprotein DNA vaccines can offer protection from the virus [].; GO: 0019074 viral RNA genome packaging, 0019013 viral nucleocapsid
Probab=34.27 E-value=7.6e+02 Score=29.71 Aligned_cols=25 Identities=40% Similarity=0.735 Sum_probs=19.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004575 572 RSGGLVDYDDDEDDEDYRPPPRKQSE 597 (744)
Q Consensus 572 ~~~~LVdY~dDddd~~~~~~~~~~~~ 597 (744)
.++.||=++-||||||.+|.| ++..
T Consensus 461 ~~ddl~Lfdlddd~dd~~~~p-~q~~ 485 (717)
T PF05505_consen 461 APDDLVLFDLDDDDDDNKPVP-QQKD 485 (717)
T ss_pred CCCCeeeeccccCCcccccCc-cccc
Confidence 456799888888888888888 4443
No 58
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=33.57 E-value=2.9e+02 Score=25.18 Aligned_cols=75 Identities=19% Similarity=0.233 Sum_probs=57.3
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCChhhhHHHHHHHHHH
Q 004575 182 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 261 (744)
Q Consensus 182 ~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~~sK~LQ~~~r~~lfk~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~i 261 (744)
.-+++.+..+.||..+ -|-.|+..|++++.- ++ ....--.+++.++...|+++|+-|-..|+-.|..+
T Consensus 3 ~~~~~al~~L~dp~~P--vRa~gL~~L~~Li~~-~~---------~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~L 70 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPP--VRAHGLVLLRKLIES-KS---------EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAAL 70 (92)
T ss_pred HHHHHHHHHccCCCcc--hHHHHHHHHHHHHHc-CC---------cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHH
Confidence 3466777777777654 688889899988873 22 11222346778888899999999999999999999
Q ss_pred HhcChHH
Q 004575 262 LNQDPNL 268 (744)
Q Consensus 262 ie~dPsl 268 (744)
.+..|.-
T Consensus 71 a~~~p~~ 77 (92)
T PF10363_consen 71 ADRHPDE 77 (92)
T ss_pred HHHChHH
Confidence 9999983
No 59
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=32.89 E-value=2.7e+02 Score=26.95 Aligned_cols=54 Identities=7% Similarity=0.263 Sum_probs=42.3
Q ss_pred hHHHHHHHhhcccchhHHHHHHHHHHHHHccChhHHHHHHHhhCcHHHHHHHHH-HhC
Q 004575 391 NVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFV-ANG 447 (744)
Q Consensus 391 nll~kVl~Ll~~~~K~L~LaALRFlR~iI~lkDefy~ryiIk~nLf~PVl~~f~-~ng 447 (744)
.++..++.-|+.+..+.++-|||+++.|+....+.|.+.+.+|- +++..+. -.|
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~---~~Ik~~~~f~g 92 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNS---AQIRECANYKG 92 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhH---HHHHHHHHcCC
Confidence 45566666667788999999999999999999999999999883 4555554 344
No 60
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=32.76 E-value=4.5e+02 Score=25.74 Aligned_cols=37 Identities=16% Similarity=0.286 Sum_probs=21.5
Q ss_pred HHHHHHhcCcHHHHHHHHcCCChhhhHHHHHHHHHHH
Q 004575 226 LFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 262 (744)
Q Consensus 226 lfk~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~ii 262 (744)
-|..+++..+.+.+-..+.+.+..+-..+.-|+..++
T Consensus 65 ~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~ 101 (168)
T PF12783_consen 65 SLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLL 101 (168)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 4455555555555555555555666666666666665
No 61
>PF06334 Orthopox_A47: Orthopoxvirus A47 protein; InterPro: IPR009402 This family consists of several Orthopoxvirus A47 proteins. The function of this family is unknown.
Probab=31.51 E-value=32 Score=35.25 Aligned_cols=84 Identities=21% Similarity=0.437 Sum_probs=56.3
Q ss_pred HHHHHHHhcCcch---HHHH---HHHHhccHHHHHHHHHHHHHHHh--------------------cCChhhHHHHHHHH
Q 004575 18 LILKTVTESGIAD---QMRL---TELILNDQDFFRKLMDLFRICED--------------------LENIDGLHMIFKII 71 (744)
Q Consensus 18 eI~~~i~~~s~~~---~~rl---~~~Il~~~~YI~KLl~LF~~cEd--------------------lenle~Lh~L~~Iv 71 (744)
+|.++|.-++..+ |.++ .+-++-++=-++.|+.-.+..|. -.+.....-+-...
T Consensus 68 ~I~E~I~Ks~~~DiDKR~KL~~NIKs~~~NPF~i~GL~~SLE~~~~~~~~~YSSVMILGef~iin~~~~~a~FeFi~~LL 147 (244)
T PF06334_consen 68 EIFEIIQKSNSMDIDKRIKLMHNIKSMMINPFMIKGLMESLENFDPDNKMSYSSVMILGEFNIINISDNEATFEFINSLL 147 (244)
T ss_pred HHHHHHHhccccCHHHHHHHHHhhHHHhcCHHHHHHHHHHHhccCCCCCcceeeeEEeeccceEeccCchhHHHHHHHHH
Confidence 5667775544333 3332 33344456666677664444332 22334456678889
Q ss_pred HHHHhcCCh--hhHHhhhcchhHhHHhhhccc
Q 004575 72 KGIILLNSP--QIFEKIFGDELMMDIIGSLEY 101 (744)
Q Consensus 72 K~IilLNd~--~I~E~llsDe~i~~VVG~LEY 101 (744)
|++++||.. .|+|+..+.+....-+.||||
T Consensus 148 KSL~lLNtrQ~KllEy~I~NDlLY~~I~~lEY 179 (244)
T PF06334_consen 148 KSLLLLNTRQLKLLEYAINNDLLYEHINALEY 179 (244)
T ss_pred HHHHhhcchhhhHHHHhhhhhHHHHHHHHHHH
Confidence 999999966 589999999999999999999
No 62
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=30.85 E-value=3.5e+02 Score=25.95 Aligned_cols=76 Identities=16% Similarity=0.282 Sum_probs=52.7
Q ss_pred hHHhHHHHHHhhHHHHHHHhhcChHHHHHHHHHhCCCCCCHHhHHHHHHHHHHHHHhhhc-cChHhHHHHHHHHHhcC
Q 004575 158 TVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKS-LQMVQQLRLFRDLMNEG 234 (744)
Q Consensus 158 t~s~LnS~IffNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~~sK~-LQ~~~r~~lfk~Lv~~G 234 (744)
++.+|.+++-.....+-..+. +..|+.+|...+.++.....-|..++.++++--.--++ =+.+.-...|..|...|
T Consensus 57 AL~lLe~~vkNcg~~f~~ev~-s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~~~~~~i~~~y~~L~~~g 133 (133)
T smart00288 57 ALTLLDACVKNCGSKFHLEVA-SKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKNDPDLSQIVDVYDLLKKKG 133 (133)
T ss_pred HHHHHHHHHHHCCHHHHHHHH-hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHCc
Confidence 455666666655555656665 57999999999988776655777888888887654333 33444567888887766
No 63
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=30.21 E-value=5.4e+02 Score=25.29 Aligned_cols=107 Identities=12% Similarity=0.104 Sum_probs=70.4
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCChhhhHHHHHHHHHHHhcC
Q 004575 186 ELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQD 265 (744)
Q Consensus 186 eLF~~l~~~~~~~e~rrd~v~FL~E~c~~sK~LQ~~~r~~lfk~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~iie~d 265 (744)
++..+..++....+.+ ..+-++|-+-++=+...|. .+.+|..-|++.++.+...|..+|-+|+...
T Consensus 3 ~~iekATse~l~~~dw----~~il~icD~I~~~~~~~k~----------a~ral~KRl~~~n~~v~l~AL~LLe~~vkNC 68 (144)
T cd03568 3 DLVEKATDEKLTSENW----GLILDVCDKVKSDENGAKD----------CLKAIMKRLNHKDPNVQLRALTLLDACAENC 68 (144)
T ss_pred HHHHHHcCccCCCcCH----HHHHHHHHHHhcCCccHHH----------HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC
Confidence 4455555554433322 4556777765443433443 3456777788999999999999999999999
Q ss_pred hHHHHHHHHhccCCCcHHHHHHHHhhcCCcchHHHHHHHHHHhc
Q 004575 266 PNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 309 (744)
Q Consensus 266 PslvR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk~LL 309 (744)
...++..+.+ ..+++-|++.+-.-.++.++.-+.+.++.+=
T Consensus 69 G~~fh~evas---k~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 69 GKRFHQEVAS---RDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred CHHHHHHHhh---HHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 8888877764 3477777764333256667777777776653
No 64
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=30.12 E-value=90 Score=22.55 Aligned_cols=36 Identities=11% Similarity=0.080 Sum_probs=30.0
Q ss_pred hhHHhhhhHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 004575 384 KCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 419 (744)
Q Consensus 384 K~~~l~~nll~kVl~Ll~~~~K~L~LaALRFlR~iI 419 (744)
+..+...+.+..++.|+.+.+.-++-.|+..+|++.
T Consensus 5 ~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 5 KQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 446677788888999999888999999999999874
No 65
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=29.02 E-value=5.3e+02 Score=24.80 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=69.9
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCChhhhHHHHHHHHHHHh
Q 004575 184 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 263 (744)
Q Consensus 184 L~eLF~~l~~~~~~~e~rrd~v~FL~E~c~~sK~LQ~~~r~~lfk~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~iie 263 (744)
+.++..+..++....+.+ ..+-++|.+.++-....+. ...+|..-|++.++.+...|..+|=+++.
T Consensus 6 ~~~li~kATs~~~~~~Dw----~~~l~icD~i~~~~~~~ke----------a~~~l~krl~~~~~~vq~~aL~lld~lvk 71 (140)
T PF00790_consen 6 ITELIEKATSESLPSPDW----SLILEICDLINSSPDGAKE----------AARALRKRLKHGNPNVQLLALTLLDALVK 71 (140)
T ss_dssp HHHHHHHHT-TTSSS--H----HHHHHHHHHHHTSTTHHHH----------HHHHHHHHHTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCCCH----HHHHHHHHHHHcCCccHHH----------HHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 456666666655443322 2233677765444443443 34677778899999999999999999999
Q ss_pred cChHHHHHHHHhccCCCcHHHHHHHHhhcCCcc---hHHHHHHHHHHhc
Q 004575 264 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGED---MHCQFLEILRSLL 309 (744)
Q Consensus 264 ~dPslvR~~i~~qe~~~Ll~lLi~~ll~D~~~g---L~~Ql~eaLk~LL 309 (744)
+....++..+.+ ..+++.|.+.+-...... ++..+.+.|..+=
T Consensus 72 Ncg~~f~~ev~~---~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 72 NCGPRFHREVAS---KEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HSHHHHHHHHTS---HHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhH---HHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 987777776654 347888777544433332 6777777766553
No 66
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=28.09 E-value=1e+03 Score=27.92 Aligned_cols=169 Identities=17% Similarity=0.137 Sum_probs=87.3
Q ss_pred CcHHHHHHHHcCC--ChhhhHHHHHHH---HHHHhcChH----HHHHHHHhccCCCcHHHHHHHHhhcCCcchHHHHHHH
Q 004575 234 GIFDIVTDALQSQ--DKKLVLTGTDIL---ILFLNQDPN----LLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEI 304 (744)
Q Consensus 234 GLl~vi~~~L~~~--d~~ir~~atDIL---i~iie~dPs----lvR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~~Ql~ea 304 (744)
.++.++..+|.++ +.++|..|..-+ ..++.|-+. .+|.++.. ++.++++.-...=....+..+++..+|+
T Consensus 319 ~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~-~g~p~~~~~~~~~~~~~~~~lR~~aYe~ 397 (501)
T PF13001_consen 319 NILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILS-QGWPLIQDSSSQSNSSEDIELRSLAYET 397 (501)
T ss_pred cHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHh-cCccccccccccCCCcccHHHHHHHHHH
Confidence 3556777788777 778888888887 666665543 35555553 3344432100000012345678888899
Q ss_pred HHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCcCCCcHHHHHHHHHHHHHHHhcCCccch
Q 004575 305 LRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIK 384 (744)
Q Consensus 305 Lk~LLDp~~m~~~ekd~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~yriK 384 (744)
|=.|.--..+.-.++- ..+.|||+-|....+ ...+.+-.-|.-|+..+...+. .
T Consensus 398 lG~L~~~~p~l~~~d~--------~li~~LF~sL~~~~~---------------evr~sIqeALssl~~af~~~~~---~ 451 (501)
T PF13001_consen 398 LGLLAKRAPSLFSKDL--------SLIEFLFDSLEDESP---------------EVRVSIQEALSSLAPAFKDLPD---D 451 (501)
T ss_pred HHHHHccCcccccccH--------HHHHHHHHHhhCcch---------------HHHHHHHHHHHHHHHHHhcccc---c
Confidence 8888743222111111 335666776522110 0122333344445555444444 0
Q ss_pred hHHhhhhHHHHHHH-hhcccchhHHHHHHHHHHHHHccChhHHHHHH
Q 004575 385 CNFLLNNVVDKVLL-LTRRREKYLVVAAVRFVRTILSRHDEHLINHF 430 (744)
Q Consensus 385 ~~~l~~nll~kVl~-Ll~~~~K~L~LaALRFlR~iI~lkDefy~ryi 430 (744)
........+..++. .........+.+|+||.-+|.--.| -.-|||
T Consensus 452 ~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~fpf~d-~~aR~i 497 (501)
T PF13001_consen 452 EDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANACFPFSD-VPARYI 497 (501)
T ss_pred hhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCCccc-hHHHHH
Confidence 01111111222221 2335567789999999999988664 445554
No 67
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=27.31 E-value=8.1e+02 Score=26.41 Aligned_cols=140 Identities=11% Similarity=0.132 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHhccCCCcHHHHHHHHhhcCCcchHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHH
Q 004575 250 LVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEK 329 (744)
Q Consensus 250 ir~~atDILi~iie~dPslvR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk~LLDp~~m~~~ekd~fL~~FY~~ 329 (744)
.|..+-.||-.++++...-++ .-+..++..++..+-.+++|---..++++++.++--... .+
T Consensus 98 ~R~~~~~ll~~l~~~~~~~l~-----~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~-------------~~ 159 (262)
T PF14500_consen 98 TRYAVYQLLDSLLENHREALQ-----SMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI-------------SE 159 (262)
T ss_pred HHHHHHHHHHHHHHHhHHHHH-----hchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-------------ch
Confidence 355555555555555433221 123446666666666667776566777777777643332 22
Q ss_pred HHHHHHHHHHhcCCccccccccCCCCCcCCCcHHHHHHHHHHHHHHHhcCCccchhHHhhhhHHHHHHHhhcccchhHHH
Q 004575 330 HLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVV 409 (744)
Q Consensus 330 ~~~~L~~pL~~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~yriK~~~l~~nll~kVl~Ll~~~~K~L~L 409 (744)
.++.||+.+...-|.. .... ++.....+..+| -.-|.-|...|+..- ...+.-++-.+.+..--.++
T Consensus 160 ~~e~lFd~~~cYFPI~-F~pp--~~dp~~IT~edL----k~~L~~cl~s~~~fa------~~~~p~LleKL~s~~~~~K~ 226 (262)
T PF14500_consen 160 FAEDLFDVFSCYFPIT-FRPP--PNDPYGITREDL----KRALRNCLSSTPLFA------PFAFPLLLEKLDSTSPSVKL 226 (262)
T ss_pred hHHHHHHHhhheeeee-eeCC--CCCCCCCCHHHH----HHHHHHHhcCcHhhH------HHHHHHHHHHHcCCCcHHHH
Confidence 3344455443332311 0000 111111223333 344555666655332 22223333334444445778
Q ss_pred HHHHHHHHHHc
Q 004575 410 AAVRFVRTILS 420 (744)
Q Consensus 410 aALRFlR~iI~ 420 (744)
-+++.++.|+.
T Consensus 227 D~L~tL~~c~~ 237 (262)
T PF14500_consen 227 DSLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 68
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=26.92 E-value=2.4e+02 Score=27.67 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=26.9
Q ss_pred HHHhcCcHHHHHHHHcCCChhhhHHHHHHHHHHH
Q 004575 229 DLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 262 (744)
Q Consensus 229 ~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~ii 262 (744)
-+-..+.+..|...|.+++..+|..++|||..+.
T Consensus 153 v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 153 VLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 3345688899999999999999999999998763
No 69
>PF11894 DUF3414: Protein of unknown function (DUF3414); InterPro: IPR021827 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 764 to 2011 amino acids in length. This protein has a conserved LLG sequence motif.
Probab=26.91 E-value=1.8e+03 Score=30.25 Aligned_cols=57 Identities=9% Similarity=0.107 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHhccCCCcHHHHHHHHhhcCCcchHHHHHHHHHHhc
Q 004575 252 LTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 309 (744)
Q Consensus 252 ~~atDILi~iie~dPslvR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk~LL 309 (744)
.+-.-++..++++|+. .|..+.+..+..++..|.+.+-+.--+.||+.++.+|..|+
T Consensus 582 ~a~L~Li~~V~~~s~~-ar~~l~~~~~~~~~~~L~~L~~~~vp~~Lkaai~~~Laal~ 638 (1691)
T PF11894_consen 582 SAYLRLISSVVRNSEQ-ARSALLENPNWNPIDILFGLLSCPVPPSLKAAIFNALAALA 638 (1691)
T ss_pred HHHHHHHHHHHhcCHH-HHHHHHhCCCCchHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 4445566788899865 68888776666678888887777766779999999999997
No 70
>KOG4035 consensus Coeffector of mDia Rho GTPase, regulates actin polymerization and cell adhesion turnover [Signal transduction mechanisms; Cytoskeleton]
Probab=26.66 E-value=1e+03 Score=27.48 Aligned_cols=199 Identities=20% Similarity=0.240 Sum_probs=100.2
Q ss_pred cCCCCCCc---cchHHHhhhcCCceeeeecCChHHHHHHHhhhhc-cee----e----ehhcc-cccchhhHHhHHHHHH
Q 004575 101 YDPDVPHV---QHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRV-GYL----K----DVVLA-RVLDEATVANLNSIIH 167 (744)
Q Consensus 101 YDPe~p~~---~nHR~fL~~~akFKEVIPI~d~~i~~KIHqTYRL-qYL----K----DVVLa-R~LDD~t~s~LnS~If 167 (744)
-|+..|-. .+--+|+.+.+.|.++=- ...++.-|-.|+|. -=+ + ++||| -...|---...|--++
T Consensus 125 ad~~i~~~~~s~~qfe~ls~lv~~~q~e~--r~sl~~~ilst~~al~~lD~~iid~ll~svL~~k~v~~~~td~~~~~~~ 202 (411)
T KOG4035|consen 125 ADGFIPLYVISANQFEWLSQLVAYYQMEQ--RDSLRELILSTFRALCSLDEPIIDILLDSVLPIKLVEDMQTDKSNGQQI 202 (411)
T ss_pred cCCcchhHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhhcccchHHHHHHHhhccchhhhHHHhhhhccHHHH
Confidence 56666632 577789988888777632 35788888899982 111 1 22222 1111111000111111
Q ss_pred hhHHHHHHHhhcC-------------hHHHHHHHHHhCCCCCCHHhHHHHHHHHHHHHHhhhccChH----hHHHHHHHH
Q 004575 168 GNNAYVVSLLKDD-------------STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMV----QQLRLFRDL 230 (744)
Q Consensus 168 fNqveIV~~Lq~d-------------~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~~sK~LQ~~----~r~~lfk~L 230 (744)
.-=..++-+++.+ ..|.+.||.+..+... ...+-+|.++++.+..+ ....+++-+
T Consensus 203 ~~~~~~l~~l~s~~e~~p~~~md~lgs~~~~~l~~i~e~~~~--------~~L~el~~~f~~~~n~q~~~a~~nvi~~~l 274 (411)
T KOG4035|consen 203 KYLKILLLMLFSDDEAFPLEHMDSLGSEFARFLFNIAEDFHK--------EDLLELCTNFSLATNQQQGSAPLNVIQKIL 274 (411)
T ss_pred HHHHHHHHHHHhccchhHHHHHHhcCCHHHHHHHHHcCcccH--------HHHHHHHHHHHHHHhhhcccccHHHHHHHh
Confidence 1111122233322 2466677776665322 33455566666643322 233456666
Q ss_pred HhcCcHHHHHHH----HcCCChhhhHHHHHHHHHHHh--cChHHHHHHHHhccC-CCcHHHHHHHHhhc-CCcchHHHHH
Q 004575 231 MNEGIFDIVTDA----LQSQDKKLVLTGTDILILFLN--QDPNLLRSYVVRQEG-IPLLGLLVKGMITD-FGEDMHCQFL 302 (744)
Q Consensus 231 v~~GLl~vi~~~----L~~~d~~ir~~atDILi~iie--~dPslvR~~i~~qe~-~~Ll~lLi~~ll~D-~~~gL~~Ql~ 302 (744)
.++---.+.... |+..+..+|.....+|-.+++ -+|+.. ...+ .+| ..|+.++++.+..= .|..++.-..
T Consensus 275 ~n~~~~kiFtE~Lll~LNR~~DPlril~hkvl~lild~fg~pat~-~mFY-tNDlkVLIDIliRel~ni~~gd~lr~~~l 352 (411)
T KOG4035|consen 275 ENPYSCKIFTEKLLLKLNREDDPLRILKHKVLYLILDPFGEPATA-KMFY-TNDLKVLIDILIRELINIDEGDKLRAIYL 352 (411)
T ss_pred cCCchHHHHHHHHHHHHccCCChHHHHHHHHHHHHHhhcCCcchH-hHhh-hccHHHHHHHHHHHHhcCCcchhhHHHHH
Confidence 554433333322 333333388888887766663 344432 2222 222 35888888876432 2344666666
Q ss_pred HHHHHhcCC
Q 004575 303 EILRSLLDS 311 (744)
Q Consensus 303 eaLk~LLDp 311 (744)
..++.|+-.
T Consensus 353 ~ll~~llkn 361 (411)
T KOG4035|consen 353 FLLKFLLKN 361 (411)
T ss_pred HHHHHHHhc
Confidence 777777643
No 71
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=26.63 E-value=2.6e+02 Score=23.55 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=19.5
Q ss_pred cHHHHHHHHcCCChhhhHHHHHHHHHH
Q 004575 235 IFDIVTDALQSQDKKLVLTGTDILILF 261 (744)
Q Consensus 235 Ll~vi~~~L~~~d~~ir~~atDILi~i 261 (744)
.++.+...++++|..+|..++..|..+
T Consensus 32 ~~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 32 AIPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 356677777888888888777766544
No 72
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.63 E-value=1.4e+03 Score=28.96 Aligned_cols=105 Identities=19% Similarity=0.276 Sum_probs=63.6
Q ss_pred HhhHHHHHHHhhcChHHHHHHHHHhCCCCCCHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHH----------HhcCcH
Q 004575 167 HGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDL----------MNEGIF 236 (744)
Q Consensus 167 ffNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~~sK~LQ~~~r~~lfk~L----------v~~GLl 236 (744)
+|=|++-+++++++ .|+.+=.+-|.- ..=-+.|.|++..|-.+.. +-|+...+...=-+| .-+.|.
T Consensus 69 hFGqieclKLias~-~f~dKRiGYLaa-mLlLdE~qdvllLltNslk--nDL~s~nq~vVglAL~alg~i~s~Emardla 144 (866)
T KOG1062|consen 69 HFGQIECLKLIASD-NFLDKRIGYLAA-MLLLDERQDLLLLLTNSLK--NDLNSSNQYVVGLALCALGNICSPEMARDLA 144 (866)
T ss_pred cchhhHHHHHhcCC-CchHHHHHHHHH-HHHhccchHHHHHHHHHHH--hhccCCCeeehHHHHHHhhccCCHHHhHHhh
Confidence 67788889988864 777654442210 0001234455554433322 223332222111111 123467
Q ss_pred HHHHHHHcCCChhhhHHHHHHHHHHHhcChHHHHHHHHh
Q 004575 237 DIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVR 275 (744)
Q Consensus 237 ~vi~~~L~~~d~~ir~~atDILi~iie~dPslvR~~i~~ 275 (744)
+-++..|++.++-||-.|+=-.+-++--.|+++-.|+-.
T Consensus 145 peVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~ 183 (866)
T KOG1062|consen 145 PEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIA 183 (866)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHH
Confidence 788899999999999999888888999999988877653
No 73
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=26.47 E-value=8.7e+02 Score=26.47 Aligned_cols=126 Identities=15% Similarity=0.282 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHH-cCCChhhhHHHHHHHHHHHhcChHHHHHHHHhccCC
Q 004575 201 KKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDAL-QSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGI 279 (744)
Q Consensus 201 rrd~v~FL~E~c~~sK~LQ~~~r~~lfk~Lv~~GLl~vi~~~L-~~~d~~ir~~atDILi~iie~dPslvR~~i~~qe~~ 279 (744)
.-.++..||-+|- |-|++|.- |. +++-+.++-..| ......+..++.|.|+.++=-+|...|.|- +.+|-
T Consensus 108 i~~aL~vLQGl~L----LHp~Sr~l-F~---r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE-~~~Gl 178 (257)
T PF08045_consen 108 IALALRVLQGLCL----LHPPSRKL-FH---REQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFE-ELNGL 178 (257)
T ss_pred HHHHHHHHHHHHH----cCchHHHH-Hh---hhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHH-HhCCH
Confidence 4456678888887 55666653 22 445556666666 345688899999999998777787788762 22332
Q ss_pred CcHHHHHHHHhhc--CCcchHHHHHHHHHHhcCCCCC-----------------ChhhHHHHHHHHHHHHHHHHHHHHHh
Q 004575 280 PLLGLLVKGMITD--FGEDMHCQFLEILRSLLDSYTL-----------------SGAQRDTIIEIFYEKHLGQLIDVITA 340 (744)
Q Consensus 280 ~Ll~lLi~~ll~D--~~~gL~~Ql~eaLk~LLDp~~m-----------------~~~ekd~fL~~FY~~~~~~L~~pL~~ 340 (744)
..++. ++.+ .+..++..+.|-|-..|-|+.. +..+|.+++.-++.+ ++-|++-|..
T Consensus 179 ---~~v~~-llk~~~~~~~~r~K~~EFL~fyl~~E~~~~~~~~~~~~~~~~~~~t~~eKq~ll~~~~~~-vd~Lv~dL~~ 253 (257)
T PF08045_consen 179 ---STVCS-LLKSKSTDRELRLKCIEFLYFYLMPETPSIPPGSSSSGSEGRATKTTEEKQELLGRYLSN-VDDLVEDLNE 253 (257)
T ss_pred ---HHHHH-HHccccccHHHhHHHHHHHHHHHcccCCCCCcccccccCCCcCcccHHHHHHHHHHhccc-HHHHHHHHHH
Confidence 22332 2333 3456778888888888866532 123677888777755 6778877654
No 74
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=26.21 E-value=1.4e+02 Score=21.46 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=28.5
Q ss_pred HHHHhcCcHHHHHHHHcCCChhhhHHHHHHHHHHH
Q 004575 228 RDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 262 (744)
Q Consensus 228 k~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~ii 262 (744)
..+++.|.++.+-..|++++..++..++..|..+.
T Consensus 6 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 6 QAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 35678899999998999889999988888876553
No 75
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=25.38 E-value=5.5e+02 Score=27.85 Aligned_cols=105 Identities=15% Similarity=0.183 Sum_probs=62.7
Q ss_pred cHHHHHHHHHHHHHHHhcCCccchhHHhhh-----hHHHHHHHhhcccchhHHHHHHHHHHHHHccChhHHHHHHHhhCc
Q 004575 361 KPEILSNICELLCFCVLHHPYRIKCNFLLN-----NVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNL 435 (744)
Q Consensus 361 ~~~ll~~l~ELL~Fcv~~H~yriK~~~l~~-----nll~kVl~Ll~~~~K~L~LaALRFlR~iI~lkDefy~ryiIk~nL 435 (744)
..++..+++-++.=++..++.+.+.+.-.. ....-.++++...+.+.++.|.+++=.++.-.+..-...- ..+
T Consensus 70 ~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~--~~~ 147 (312)
T PF03224_consen 70 NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV--KEA 147 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH--HHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH--HHH
Confidence 455666777777778888998876554322 1455566788899999999999999999887665554432 456
Q ss_pred HHHHHHHHHHhC--CCCcchhHHHHHHHHHHHhh
Q 004575 436 LKPIVDAFVANG--NRYNLLNSAVLELFEYIRKE 467 (744)
Q Consensus 436 f~PVl~~f~~ng--~R~NLlnSA~LELfEfIr~e 467 (744)
+.++++.+.... +..|+...|+.-|-+..|..
T Consensus 148 l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~ 181 (312)
T PF03224_consen 148 LPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK 181 (312)
T ss_dssp HHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc
Confidence 677777776422 22345555555555555443
No 76
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=25.35 E-value=8.7e+02 Score=26.11 Aligned_cols=47 Identities=17% Similarity=0.247 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCcCCCcHHHHHHHHHHHHHHHhcCCc
Q 004575 318 QRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPY 381 (744)
Q Consensus 318 ekd~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~y 381 (744)
-++.++..|++..+..|+=.|.+. +. +.+-..+++|++++.++.++.
T Consensus 166 ~~d~li~~l~~~~v~~lLL~l~s~-~~----------------~~~f~~~lLEIi~ll~k~~~p 212 (266)
T PF04821_consen 166 LHDQLIWALFESGVLDLLLTLASS-PQ----------------ESDFNLLLLEIIYLLFKGQDP 212 (266)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHhC-cc----------------ccchhhHHHHHHHHHHcCCCH
Confidence 467888888888876655554432 21 111123889999998888854
No 77
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=24.71 E-value=1e+03 Score=26.73 Aligned_cols=163 Identities=16% Similarity=0.299 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCcCCCcHHHHHHHHHHHHHHH
Q 004575 297 MHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCV 376 (744)
Q Consensus 297 L~~Ql~eaLk~LLDp~~m~~~ekd~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv 376 (744)
|-.|....|-.+|=.......-.++|..+||++++..|.++ . ..| .+|-..-+|+
T Consensus 62 L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~---~-----------------~~K-----~i~~~~l~~l 116 (372)
T PF12231_consen 62 LVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNP---N-----------------SPK-----SICTHYLWCL 116 (372)
T ss_pred HHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCC---C-----------------CCH-----HHHHHHHHHH
Confidence 44455555555543222111123567789999987655331 0 011 1244445677
Q ss_pred hcCCccchhHHhhhhHHHHHHHhhc-----ccchhHHHHHHHHHHHHHccChhHHHHHHHhhCcHHHHHHHHHHhCCCCc
Q 004575 377 LHHPYRIKCNFLLNNVVDKVLLLTR-----RREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYN 451 (744)
Q Consensus 377 ~~H~yriK~~~l~~nll~kVl~Ll~-----~~~K~L~LaALRFlR~iI~lkDefy~ryiIk~nLf~PVl~~f~~ng~R~N 451 (744)
....|..| ++.++.+.+++..+. -+.+-++.-++..+|+.+...=+.+..+ -+..|.+++..+..+...
T Consensus 117 s~Q~f~~~--~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~--~~~W~~~l~~~l~~~~k~-- 190 (372)
T PF12231_consen 117 SDQKFSPK--IMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKH--ADIWFPILFPDLLSSAKD-- 190 (372)
T ss_pred HcCCCCCc--ccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhcchH--
Confidence 77777654 778888887766322 4557788899999999987543333333 223677888888766553
Q ss_pred chhHHHHHHHHHHHh--hchHHHHHHHHHHHHhhhccccchh
Q 004575 452 LLNSAVLELFEYIRK--ENLKSLVKYIVDSFWNQLVNFEYLA 491 (744)
Q Consensus 452 LlnSA~LELfEfIr~--eNik~Li~hlve~y~~~l~~i~yv~ 491 (744)
+..+++.+.+-+.+ ..-+.+.+.+.+-+...+.+-.|++
T Consensus 191 -ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~ 231 (372)
T PF12231_consen 191 -IRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQ 231 (372)
T ss_pred -HHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHH
Confidence 44444444444432 2335566666666655444334443
No 78
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=24.70 E-value=1e+03 Score=26.72 Aligned_cols=167 Identities=14% Similarity=0.197 Sum_probs=90.0
Q ss_pred HHHHHHHhc----CcHHHHHHHHcC-C-----------ChhhhHHHHHHHHHHHhcChHHHHHHHHhccCCCcHHHHHHH
Q 004575 225 RLFRDLMNE----GIFDIVTDALQS-Q-----------DKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKG 288 (744)
Q Consensus 225 ~lfk~Lv~~----GLl~vi~~~L~~-~-----------d~~ir~~atDILi~iie~dPslvR~~i~~qe~~~Ll~lLi~~ 288 (744)
.+|.++..+ +..+.+++...+ + ++.+-..+.+||-.++.|.+ +.| +++. +..++. +.+
T Consensus 98 ~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~-l~~-~iL~--~~~f~~-ff~- 171 (335)
T PF08569_consen 98 QIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHES-LAK-IILY--SECFWK-FFK- 171 (335)
T ss_dssp HHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHH-HHH-HHHT--SGGGGG-HHH-
T ss_pred HHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHH-HHH-HHhC--cHHHHH-HHH-
Confidence 467777654 233666666665 3 35566677888888888755 334 4554 223333 333
Q ss_pred HhhcCCcchHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCcCC-CcHHHHHH
Q 004575 289 MITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVES-TKPEILSN 367 (744)
Q Consensus 289 ll~D~~~gL~~Ql~eaLk~LLDp~~m~~~ekd~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~v~~-~~~~ll~~ 367 (744)
.+...+-++.+-.+..++.||-..- .--.+||..-|++...+ +.-|..+ . +| ++-+-+-.
T Consensus 172 ~~~~~~Fdiasdaf~t~~~llt~hk---~~~a~fl~~n~d~ff~~-~~~Ll~s--~-------------NYvtkrqslkL 232 (335)
T PF08569_consen 172 YVQLPNFDIASDAFSTFKELLTRHK---KLVAEFLSNNYDRFFQK-YNKLLES--S-------------NYVTKRQSLKL 232 (335)
T ss_dssp HTTSSSHHHHHHHHHHHHHHHHSSH---HHHHHHHHHTHHHHHHH-HHHHCT---S-------------SHHHHHHHHHH
T ss_pred HhcCCccHhHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHH-HHHHccC--C-------------CeEeehhhHHH
Confidence 2445556677777788887764311 11235666555555442 2223221 0 11 12233333
Q ss_pred HHHHHHHHHhcCCccc-hhHHhhhhHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 004575 368 ICELLCFCVLHHPYRI-KCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 419 (744)
Q Consensus 368 l~ELL~Fcv~~H~yri-K~~~l~~nll~kVl~Ll~~~~K~L~LaALRFlR~iI 419 (744)
|-||| ...|.+.+ ..|+=..+-+.-+..|++.+.|.++.-|...||-.|
T Consensus 233 L~ell---ldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFV 282 (335)
T PF08569_consen 233 LGELL---LDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFV 282 (335)
T ss_dssp HHHHH---HSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred HHHHH---HchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHH
Confidence 34433 34455553 445555677888888999999999999988666444
No 79
>PF15005 IZUMO: Izumo sperm-egg fusion
Probab=24.36 E-value=82 Score=31.87 Aligned_cols=93 Identities=18% Similarity=0.221 Sum_probs=53.4
Q ss_pred HhhhcccCCCCCCc-cchHHHhhhcCCceeeeecC---ChHHHHHHHhhhhcceeeehhcccccchhhHHhHHHHHHhhH
Q 004575 95 IIGSLEYDPDVPHV-QHHRNFLKEHVVFKEAIPIR---DPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNN 170 (744)
Q Consensus 95 VVG~LEYDPe~p~~-~nHR~fL~~~akFKEVIPI~---d~~i~~KIHqTYRLqYLKDVVLaR~LDD~t~s~LnS~IffNq 170 (744)
.=|||+.||.|-.. ..-|.-+- ..+|+ +|-. =..+..-+...+-+.|..|. .++.+|++++.-+.+.+...-
T Consensus 3 a~GCL~CDp~v~eal~~L~~~~l-P~~~~--~~~~~~~~~rl~~~m~~~~~~~~~~~a-~~g~vd~~~L~~va~~~~~~l 78 (160)
T PF15005_consen 3 ARGCLQCDPSVVEALKSLRHDYL-PSHLH--VEGLQARAQRLLLEMEDFFFLPYAEDA-FMGVVDEDTLDKVAWSFKNQL 78 (160)
T ss_pred CCeeeeCCHHHHHHHHHHHHHhC-ccccC--cchHHHHHHHHHHHhhCccccccchhh-hhhhccHHHHHHHHHHHHHHH
Confidence 45999999988753 11111110 23333 1111 02233344455667777774 568889999988887766544
Q ss_pred HHHHH-HhhcChHHHHHHHHHhC
Q 004575 171 AYVVS-LLKDDSTFIQELFARLR 192 (744)
Q Consensus 171 veIV~-~Lq~d~~FL~eLF~~l~ 192 (744)
-.|-+ -++ ++.|++|||..+.
T Consensus 79 krl~~s~~k-g~~ll~EL~~~r~ 100 (160)
T PF15005_consen 79 KRLTDSDLK-GEPLLKELVWMRQ 100 (160)
T ss_pred HHHhcCCcc-cchHHHHHHHHHH
Confidence 44433 333 4578888888764
No 80
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=24.19 E-value=4.6e+02 Score=25.21 Aligned_cols=76 Identities=18% Similarity=0.294 Sum_probs=49.9
Q ss_pred hHHhHHHHHHhhHHHHHHHhhcChHHHHHHHHHhCCCCCCHH--hHHHHHHHHHHHHHhhhccC-hHhHHHHHHHHHhcC
Q 004575 158 TVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEE--SKKNLVHFLHEFCGLSKSLQ-MVQQLRLFRDLMNEG 234 (744)
Q Consensus 158 t~s~LnS~IffNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e--~rrd~v~FL~E~c~~sK~LQ-~~~r~~lfk~Lv~~G 234 (744)
++.+|.+++-.-...+-..+- +..|+.+|...+.++..... -|..+..+|++.-.-.++.. ...=..+|+.|.+.|
T Consensus 62 aL~lld~lvkNcg~~f~~ev~-~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~~~i~~~y~~Lk~~G 140 (140)
T PF00790_consen 62 ALTLLDALVKNCGPRFHREVA-SKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPELSLIQDTYKRLKRKG 140 (140)
T ss_dssp HHHHHHHHHHHSHHHHHHHHT-SHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTGHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHh-HHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHCc
Confidence 455666666555555555554 46899999999887766554 57777778777765434333 223356888888776
No 81
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=24.12 E-value=6.2e+02 Score=27.95 Aligned_cols=60 Identities=22% Similarity=0.361 Sum_probs=41.2
Q ss_pred CHHhHHHHHHHHHHHHHhh--hccChHhHHHHHHHHHhcCcHHHHHHHHcCCChhhhHHHHHHHHHHHh
Q 004575 197 LEESKKNLVHFLHEFCGLS--KSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 263 (744)
Q Consensus 197 ~~e~rrd~v~FL~E~c~~s--K~LQ~~~r~~lfk~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~iie 263 (744)
-++-|.....||+.++... .-++.+. ..|+. +++.+.|+++|++..|...|.++|..+++
T Consensus 133 yPe~r~~ff~LL~~i~~~~f~~l~~lp~--~~f~~-----~idsi~wg~kh~~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 133 YPEHRVNFFKLLRAINEHCFPALLQLPP--EQFKL-----VIDSIVWGFKHTNREISETGLNILLELLN 194 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHTHHHHHS-H--HHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhHHHHHcCCH--HHHHH-----HHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 4677888888888887642 2222111 12222 45788999999999999999998877654
No 82
>PRK09687 putative lyase; Provisional
Probab=24.02 E-value=3.3e+02 Score=29.48 Aligned_cols=77 Identities=14% Similarity=0.133 Sum_probs=48.7
Q ss_pred hHHHHHHHHHhcC---cHHHHHHHHcCCChhhhHHHHHHHHHHHhcChHHHHHHHHhccCCCcHHHHHHHHhhcCCcchH
Q 004575 222 QQLRLFRDLMNEG---IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMH 298 (744)
Q Consensus 222 ~r~~lfk~Lv~~G---Ll~vi~~~L~~~d~~ir~~atDILi~iie~dPslvR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~ 298 (744)
.|......|...| +++.+...++++|..+|..|+.+|..+-+.+.. + ..-+.+|...+..|.++.++
T Consensus 39 vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--~--------~~a~~~L~~l~~~D~d~~VR 108 (280)
T PRK09687 39 KRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--Q--------DNVFNILNNLALEDKSACVR 108 (280)
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--h--------HHHHHHHHHHHhcCCCHHHH
Confidence 3444555555554 667777778899999999999998886543321 0 01223344444567777777
Q ss_pred HHHHHHHHHh
Q 004575 299 CQFLEILRSL 308 (744)
Q Consensus 299 ~Ql~eaLk~L 308 (744)
.+...+|-.+
T Consensus 109 ~~A~~aLG~~ 118 (280)
T PRK09687 109 ASAINATGHR 118 (280)
T ss_pred HHHHHHHhcc
Confidence 7777777655
No 83
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.96 E-value=1.6e+03 Score=28.65 Aligned_cols=238 Identities=16% Similarity=0.225 Sum_probs=126.5
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHH-hcCcHHHHHHHHcC-CChhhhHHHHHHH
Q 004575 181 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLM-NEGIFDIVTDALQS-QDKKLVLTGTDIL 258 (744)
Q Consensus 181 ~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~~sK~LQ~~~r~~lfk~Lv-~~GLl~vi~~~L~~-~d~~ir~~atDIL 258 (744)
...+..|-.+..+ .|-.+.||++++=|+-|-. =||-.| -+|+=+.|...=.+ .|+.+...+.|++
T Consensus 21 aETI~kLcDRves-sTL~eDRR~A~rgLKa~sr------------kYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl 87 (970)
T KOG0946|consen 21 AETIEKLCDRVES-STLLEDRRDAVRGLKAFSR------------KYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTL 87 (970)
T ss_pred HhHHHHHHHHHhh-ccchhhHHHHHHHHHHHHH------------HHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHH
Confidence 3567888888865 4456889999988876643 366665 45665555443332 4788888899998
Q ss_pred HHHHhcChHHHHHHHHhccCCCcHHHHHHHHhhcCCcchHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 004575 259 ILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVI 338 (744)
Q Consensus 259 i~iie~dPslvR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk~LLDp~~m~~~ekd~fL~~FY~~~~~~L~~pL 338 (744)
..++-||-+- -++.++.. ..|. -.|++|++- .-++ + +.-|+..+
T Consensus 88 ~il~~~dd~~---~v~dds~q----------sdd~----g~~iae~fi--k~qd---------~--------I~lll~~~ 131 (970)
T KOG0946|consen 88 LILTSHDDSP---EVMDDSTQ----------SDDL----GLWIAEQFI--KNQD---------N--------ITLLLQSL 131 (970)
T ss_pred HHHHhcCcch---hhcccchh----------hhHH----HHHHHHHHH--cCch---------h--------HHHHHHHH
Confidence 8888777421 01111100 0011 123333321 0000 0 00000000
Q ss_pred HhcCCccccccccCCCCCcCCCcHHHHHHHHHHHHHHHhcCCccchhHHhhhh-HHHHHHHhhcccchhHHHHHHHHHHH
Q 004575 339 TASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNN-VVDKVLLLTRRREKYLVVAAVRFVRT 417 (744)
Q Consensus 339 ~~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~yriK~~~l~~n-ll~kVl~Ll~~~~K~L~LaALRFlR~ 417 (744)
- . .++.|+ -+-++||+-...+-+.-.+.-++... .+.++..+++-.+-..+=.||=++-.
T Consensus 132 e----~--------~DF~VR-------~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~e 192 (970)
T KOG0946|consen 132 E----E--------FDFHVR-------LYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSE 192 (970)
T ss_pred H----h--------hchhhh-------hHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHH
Confidence 0 0 000011 01133333334444444444444332 45566666655555555555555544
Q ss_pred HHccChhHHHHHHHhhCcHHHHHHHHHHhC-CCCcchhHHHHHHHHHHHhhchHHHHHHHHHHHHhhhccc
Q 004575 418 ILSRHDEHLINHFVKNNLLKPIVDAFVANG-NRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNF 487 (744)
Q Consensus 418 iI~lkDefy~ryiIk~nLf~PVl~~f~~ng-~R~NLlnSA~LELfEfIr~eNik~Li~hlve~y~~~l~~i 487 (744)
++. ......+...=.|.|+-.+++..+.| .+..++---||-|+.-+-|.|+--=--+.-.+|-..|.++
T Consensus 193 L~k-~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~kl 262 (970)
T KOG0946|consen 193 LVK-DNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKL 262 (970)
T ss_pred HHc-cCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhh
Confidence 443 33556666667899999999999888 4555998999999998888776433333333444444433
No 84
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=23.89 E-value=7.2e+02 Score=24.64 Aligned_cols=123 Identities=17% Similarity=0.099 Sum_probs=73.3
Q ss_pred HHHHHHcCCChhhhHHHHHHHHHHHhcC-hHHHHHHHHhccCCCcHHHHHHHHhhcCCcchHHHHHHHHHHhcCCCCCCh
Q 004575 238 IVTDALQSQDKKLVLTGTDILILFLNQD-PNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSG 316 (744)
Q Consensus 238 vi~~~L~~~d~~ir~~atDILi~iie~d-PslvR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk~LLDp~~m~~ 316 (744)
-|...|++.+..-|-.|+-++...++++ +..+.++ +...+..|...+....++.++.-....|..|++--.--.
T Consensus 29 ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~-----~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 29 RINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSH-----GSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHH-----HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 4666788999999999999999999997 6555222 234677777766555555555555556665553211000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCcCCCcHHHHHHHHHHHHHHHhcCCccchhH
Q 004575 317 AQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCN 386 (744)
Q Consensus 317 ~ekd~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~yriK~~ 386 (744)
.-.+++.. -.++.++..+..-.. +.......++.|.=|+.+|+--+|.|
T Consensus 104 ~l~Rei~t----p~l~~~i~~ll~l~~-----------------~~~~~~~~l~~L~~ll~~~ptt~rp~ 152 (165)
T PF08167_consen 104 TLTREIAT----PNLPKFIQSLLQLLQ-----------------DSSCPETALDALATLLPHHPTTFRPF 152 (165)
T ss_pred chHHHHhh----ccHHHHHHHHHHHHh-----------------ccccHHHHHHHHHHHHHHCCccccch
Confidence 11222222 224444444433210 02334567899999999999877754
No 85
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.78 E-value=3.7e+02 Score=33.39 Aligned_cols=241 Identities=19% Similarity=0.260 Sum_probs=137.4
Q ss_pred HHHHHcCCChhhhHHHHHHHHHHHhcChHHHHHHHHhccCCCcHHHHHHHHhhcCCcchHHHHHHHHHHhcCCCC-CChh
Q 004575 239 VTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYT-LSGA 317 (744)
Q Consensus 239 i~~~L~~~d~~ir~~atDILi~iie~dPslvR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk~LLDp~~-m~~~ 317 (744)
+...+++.++-+|.+++.....+-+.+|.+++ +..|+..|.. |+.|.++.+-+-...+|..+.+..+ +...
T Consensus 126 l~~~l~d~~~yvRktaa~~vakl~~~~~~~~~-------~~gl~~~L~~-ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~ 197 (734)
T KOG1061|consen 126 LLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVE-------DSGLVDALKD-LLSDSNPMVVANALAALSEIHESHPSVNLL 197 (734)
T ss_pred HHHhccCCChhHHHHHHHHHHHhhcCChhhcc-------ccchhHHHHH-HhcCCCchHHHHHHHHHHHHHHhCCCCCcc
Confidence 44456788888899888888888888877543 3457777665 5568888877677777777776543 2111
Q ss_pred -hHHHHHHHHHH---HHHHHH----HHHHHhcCCccccccccCCCCCcCCCcHHHHHHHHHHHHHHHhcCCccc-----h
Q 004575 318 -QRDTIIEIFYE---KHLGQL----IDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRI-----K 384 (744)
Q Consensus 318 -ekd~fL~~FY~---~~~~~L----~~pL~~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~yri-----K 384 (744)
.-..+++.+-+ .|-.|- .+.+....|. +..=...+|+.++=..+|-.-+. |
T Consensus 198 ~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~----------------d~~ea~~i~~r~~p~Lqh~n~avvlsavK 261 (734)
T KOG1061|consen 198 ELNPQLINKLLEALNECTEWGQIFILDCLAEYVPK----------------DSREAEDICERLTPRLQHANSAVVLSAVK 261 (734)
T ss_pred cccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCC----------------CchhHHHHHHHhhhhhccCCcceEeehHH
Confidence 01111111111 122221 1111111111 01112356676665544443321 1
Q ss_pred hHH--------hhhhHHHHHHH---hhcccchhHHHHHHHHHHHHHccChhHHHHHHHhhCcH---HHH------HHHHH
Q 004575 385 CNF--------LLNNVVDKVLL---LTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLL---KPI------VDAFV 444 (744)
Q Consensus 385 ~~~--------l~~nll~kVl~---Ll~~~~K~L~LaALRFlR~iI~lkDefy~ryiIk~nLf---~PV------l~~f~ 444 (744)
-+. ..+.+..|+.. .+-+...-++..|||=++-++...++ +.+.=++.=.+ +|| ++++.
T Consensus 262 v~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~-~~~~~~~~Ff~kynDPiYvK~eKleil~ 340 (734)
T KOG1061|consen 262 VILQLVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPE-ILKVEIKVFFCKYNDPIYVKLEKLEILI 340 (734)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChH-HHHhHhHeeeeecCCchhhHHHHHHHHH
Confidence 111 11223334332 24466777788999999999999988 77777777544 455 35555
Q ss_pred HhCCCCcchhHHHHHHHHHHHh-------hchHHHH---------HHHHHHHHhhhc-cccch-----hhHHHHHHhhhh
Q 004575 445 ANGNRYNLLNSAVLELFEYIRK-------ENLKSLV---------KYIVDSFWNQLV-NFEYL-----ASLHSFKVKYEQ 502 (744)
Q Consensus 445 ~ng~R~NLlnSA~LELfEfIr~-------eNik~Li---------~hlve~y~~~l~-~i~yv-----~tf~~Lk~rYeQ 502 (744)
+-.+..|+-. ..-||-+|--- +-|+.+- +.+|..+-+.++ +++|| .+|+.+-.+|.|
T Consensus 341 ~la~~~nl~q-vl~El~eYatevD~~fvrkaIraig~~aik~e~~~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~ 419 (734)
T KOG1061|consen 341 ELANDANLAQ-VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQSNDCVSILLELLETKVDYVVQEAIVVIRDILRKYPN 419 (734)
T ss_pred HHhhHhHHHH-HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCC
Confidence 6666667766 66677776522 2222221 345666666666 67775 478999899998
Q ss_pred hhc
Q 004575 503 CLE 505 (744)
Q Consensus 503 ~~~ 505 (744)
.-+
T Consensus 420 ~~~ 422 (734)
T KOG1061|consen 420 KYE 422 (734)
T ss_pred chh
Confidence 754
No 86
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=23.72 E-value=4.4e+02 Score=25.47 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=44.7
Q ss_pred cHHHHHHHHHHHHHHHhcCCccchhHHhhhhHHHHHHHhhcccchhHHHHHHHHHHHHHcc
Q 004575 361 KPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 421 (744)
Q Consensus 361 ~~~ll~~l~ELL~Fcv~~H~yriK~~~l~~nll~kVl~Ll~~~~K~L~LaALRFlR~iI~l 421 (744)
.+..+.-.|-=|..+|++|+. .|..+-.-+.=.+|..||...+.=++=-||.++-.++.-
T Consensus 57 d~~~laVac~Dig~~vr~~p~-gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 57 DPTTLAVACHDIGEFVRHYPN-GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH-GG-GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred CcceeehhhcchHHHHHHChh-HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 445667778888999999975 454443345667899999999999999999999888753
No 87
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=23.36 E-value=1.8e+02 Score=21.73 Aligned_cols=36 Identities=8% Similarity=0.046 Sum_probs=31.1
Q ss_pred hhHHhhhhHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 004575 384 KCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 419 (744)
Q Consensus 384 K~~~l~~nll~kVl~Ll~~~~K~L~LaALRFlR~iI 419 (744)
+..++..+.+..++.|+++.+.-++-.|+..++++-
T Consensus 5 ~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 5 KQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 446777889999999999999999999999998864
No 88
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=23.08 E-value=3.5e+02 Score=29.15 Aligned_cols=86 Identities=17% Similarity=0.267 Sum_probs=46.1
Q ss_pred CCccchhHHhhhhHHHHHHHhhc-----------ccchhHHHHHHHHHHHHHccCh-----------hHHHHHHH----h
Q 004575 379 HPYRIKCNFLLNNVVDKVLLLTR-----------RREKYLVVAAVRFVRTILSRHD-----------EHLINHFV----K 432 (744)
Q Consensus 379 H~yriK~~~l~~nll~kVl~Ll~-----------~~~K~L~LaALRFlR~iI~lkD-----------efy~ryiI----k 432 (744)
|-+..|..|+..+++.-|+.++. ..+.-+.=-.|=|+|+++...| ...+.-+| +
T Consensus 97 ~l~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~ 176 (266)
T PF04821_consen 97 YLQSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFE 176 (266)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHH
Confidence 33445778888777766655432 1123333356789999988733 22332222 5
Q ss_pred hCcHHHHHHHHHHhCCCCcchhHHHHHHHHHHHh
Q 004575 433 NNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK 466 (744)
Q Consensus 433 ~nLf~PVl~~f~~ng~R~NLlnSA~LELfEfIr~ 466 (744)
+++++-++.+.-.- +.+-.+..+||+|.+|-+
T Consensus 177 ~~v~~lLL~l~s~~--~~~~f~~~lLEIi~ll~k 208 (266)
T PF04821_consen 177 SGVLDLLLTLASSP--QESDFNLLLLEIIYLLFK 208 (266)
T ss_pred cCHHHHHHHHHhCc--cccchhhHHHHHHHHHHc
Confidence 55555555443322 112233367777766655
No 89
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=22.94 E-value=5.9e+02 Score=25.03 Aligned_cols=76 Identities=16% Similarity=0.222 Sum_probs=54.0
Q ss_pred hHHhHHHHHHhhHHHHHHHhhcChHHHHHHHHHhCCCCCCHHhHHHHHHHHHHHHH-hhhccChHhHHHHHHHHHhcCc
Q 004575 158 TVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCG-LSKSLQMVQQLRLFRDLMNEGI 235 (744)
Q Consensus 158 t~s~LnS~IffNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~-~sK~LQ~~~r~~lfk~Lv~~GL 235 (744)
++.+|-+++-.....+-..+. +..|+.+|-..+.++ +..+-|..+..+|++--. +...-+...=..+|+.|...|+
T Consensus 57 AL~LLe~~vkNCG~~fh~eva-sk~Fl~eL~kl~~~~-~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~L~~~G~ 133 (144)
T cd03568 57 ALTLLDACAENCGKRFHQEVA-SRDFTQELKKLINDR-VHPTVKEKLREVVKQWADEFKNDPSLSLMSDLYKKLKNEGP 133 (144)
T ss_pred HHHHHHHHHHHCCHHHHHHHh-hHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHcCC
Confidence 566666666665555555554 579999999999876 677778888888888764 3333333344678999999996
No 90
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=22.84 E-value=5.4e+02 Score=25.57 Aligned_cols=79 Identities=13% Similarity=0.256 Sum_probs=53.1
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCChhhhHHHHHHHHHH
Q 004575 182 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 261 (744)
Q Consensus 182 ~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~~sK~LQ~~~r~~lfk~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~i 261 (744)
.+++.+++.|.|++ ..-|+.++.-|.++..- --+.. |. .+|.-+-.++.++|+.||..|.-.+..+
T Consensus 25 ~~~~~l~~~L~D~~--~~VR~~al~~Ls~Li~~-d~ik~--k~---------~l~~~~l~~l~D~~~~Ir~~A~~~~~e~ 90 (178)
T PF12717_consen 25 PYLPNLYKCLRDED--PLVRKTALLVLSHLILE-DMIKV--KG---------QLFSRILKLLVDENPEIRSLARSFFSEL 90 (178)
T ss_pred hHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHc-Cceee--hh---------hhhHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 57889999999875 45677777777666531 00111 11 1334455677999999999999998888
Q ss_pred Hhc-ChHHHHHHHH
Q 004575 262 LNQ-DPNLLRSYVV 274 (744)
Q Consensus 262 ie~-dPslvR~~i~ 274 (744)
... +|+.+.+.+.
T Consensus 91 ~~~~~~~~i~~~~~ 104 (178)
T PF12717_consen 91 LKKRNPNIIYNNFP 104 (178)
T ss_pred HHhccchHHHHHHH
Confidence 777 8877655443
No 91
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=22.74 E-value=3.1e+02 Score=31.38 Aligned_cols=61 Identities=11% Similarity=0.169 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHc-CCChhhhHHHHHHHHHHHhcCh
Q 004575 202 KNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQ-SQDKKLVLTGTDILILFLNQDP 266 (744)
Q Consensus 202 rd~v~FL~E~c~~sK~LQ~~~r~~lfk~Lv~~GLl~vi~~~L~-~~d~~ir~~atDILi~iie~dP 266 (744)
--++.||+|++.=.+ -+..... ..+++-=+-++++-++- ++.+.+|..++|++-.|++..-
T Consensus 229 ~~vL~fl~~Ll~~~~-~~~~~~~---~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~ 290 (373)
T PF14911_consen 229 ASVLAFLQQLLKRLQ-RQNENQI---LTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQ 290 (373)
T ss_pred HHHHHHHHHHHHhcC-cccchhH---HHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHccc
Confidence 346677777765321 2222222 23333334456666654 4488999999999999888664
No 92
>PF14278 TetR_C_8: Transcriptional regulator C-terminal region
Probab=21.99 E-value=2e+02 Score=23.45 Aligned_cols=68 Identities=10% Similarity=0.181 Sum_probs=34.4
Q ss_pred HHHHHhhcChHHHHHHHHHhCCCCCCHHhHHHHHHHHHHHHH--hhhcc-ChHhHHHHHHHHHhcCcHHHHHHHH
Q 004575 172 YVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCG--LSKSL-QMVQQLRLFRDLMNEGIFDIVTDAL 243 (744)
Q Consensus 172 eIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~--~sK~L-Q~~~r~~lfk~Lv~~GLl~vi~~~L 243 (744)
+|.++++++.+|++-||+.=. +..-...+...+++... +.... +......++.+++-.|++.+|..=|
T Consensus 6 ~i~~~i~~n~~~~~~ll~~~~----~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~f~~sg~igvi~~Wl 76 (77)
T PF14278_consen 6 EIFEYIYENRDFYKILLSPNG----DPNFQERLKELIKEWITEYINENSPDNDDPEEYLISFIVSGIIGVIQWWL 76 (77)
T ss_pred HHHHHHHHhHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHh
Confidence 466777777776666665222 22222333333333332 11111 1111222778888999998887543
No 93
>PF04988 AKAP95: A-kinase anchoring protein 95 (AKAP95); InterPro: IPR007071 A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex. The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=21.78 E-value=1.8e+02 Score=29.69 Aligned_cols=98 Identities=11% Similarity=0.138 Sum_probs=51.7
Q ss_pred hhHHHHHHHhhcChHHHHHHHHHhCCCCCCHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHH------HhcCcHHHHHH
Q 004575 168 GNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDL------MNEGIFDIVTD 241 (744)
Q Consensus 168 fNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~~sK~LQ~~~r~~lfk~L------v~~GLl~vi~~ 241 (744)
||.-||-.+|++ .|=+|-|.-+. ...+ +-.+.|||||..- |+=+...|....... ++.+++.-|..
T Consensus 11 f~~~ei~~HleS--~~H~E~~~~i~-tkl~----k~~~dFLqEy~~n-k~KKt~~r~~~~~~~~~~~~~ie~D~~~gig~ 82 (165)
T PF04988_consen 11 FEEKEIEKHLES--KFHKETLKYIQ-TKLP----KKTMDFLQEYMVN-KFKKTESRRQQLENSSEASKQIEQDVMEGIGQ 82 (165)
T ss_pred ccHHHHHHHHcc--chHHHHHHHHH-hcCC----hHHHHHHHHHHHh-hHHHHHHHHHHHHHhhhcccccccchhhhcCH
Confidence 788999999985 57777777662 2222 3468999999862 111111222211111 12233332221
Q ss_pred HHcCC-ChhhhHHHHHHHHHHHhcChHHHHHHHHhc
Q 004575 242 ALQSQ-DKKLVLTGTDILILFLNQDPNLLRSYVVRQ 276 (744)
Q Consensus 242 ~L~~~-d~~ir~~atDILi~iie~dPslvR~~i~~q 276 (744)
---+. -..+..+|||+++-.. +++|+.++.++
T Consensus 83 ehfm~KVEa~hCsACd~~IP~~---~~~vQ~Hl~S~ 115 (165)
T PF04988_consen 83 EHFMKKVEAAHCSACDVFIPMQ---HSSVQKHLKSQ 115 (165)
T ss_pred HHHHHHHHHhhhhHhhhhccCc---HHHHHHHhccH
Confidence 00001 1234778999987544 56666666543
No 94
>PTZ00429 beta-adaptin; Provisional
Probab=21.17 E-value=1.7e+03 Score=27.93 Aligned_cols=68 Identities=12% Similarity=0.098 Sum_probs=44.3
Q ss_pred hcCcHHHHHHHHcCCChhhhHHHHHHHHHHHhcChHHHHHHHHhccCCCcHHHHHHHHhhcCCcchHHHHHHHHH
Q 004575 232 NEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILR 306 (744)
Q Consensus 232 ~~GLl~vi~~~L~~~d~~ir~~atDILi~iie~dPslvR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk 306 (744)
..|+.+-+...|.+.|+.+...|+=.|..|-+++|..+. ... ..+.-|+.. +.+.++=.|..++++|.
T Consensus 177 ~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~-----~~~~~Ll~~-L~e~~EW~Qi~IL~lL~ 244 (746)
T PTZ00429 177 QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE-SSN-----EWVNRLVYH-LPECNEWGQLYILELLA 244 (746)
T ss_pred ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-HHH-----HHHHHHHHH-hhcCChHHHHHHHHHHH
Confidence 446777777789999999999999999999998886431 111 111222322 34556655666666663
No 95
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=21.06 E-value=3.8e+02 Score=31.49 Aligned_cols=131 Identities=22% Similarity=0.324 Sum_probs=90.1
Q ss_pred HHHHHHHhhcC-------hHHHHHHHHHhCCCCCCHHhHHHHHHHH---HHHHHhhhccChHhHHHHHHHHHhcCcHHHH
Q 004575 170 NAYVVSLLKDD-------STFIQELFARLRSPTTLEESKKNLVHFL---HEFCGLSKSLQMVQQLRLFRDLMNEGIFDIV 239 (744)
Q Consensus 170 qveIV~~Lq~d-------~~FL~eLF~~l~~~~~~~e~rrd~v~FL---~E~c~~sK~LQ~~~r~~lfk~Lv~~GLl~vi 239 (744)
|..|+++|..+ +..++=+|.-+.++++...-|.-++.|+ +..+. +.+ +......+..+..|+.+.+
T Consensus 300 q~kIL~~L~kS~~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~---~~~-~~~l~~l~~~i~~~g~p~~ 375 (501)
T PF13001_consen 300 QEKILSLLSKSVIAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFK---HIS-PQILKLLRPVILSQGWPLI 375 (501)
T ss_pred HHHHHHHHHHhHHHHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhh---hcC-HHHHHHHHHHHHhcCcccc
Confidence 66777777644 2345555555666655555667788898 44443 233 2355577777777777887
Q ss_pred HH----HHcCCChhhhHHHHHHHHHHHhcChHHHHHHHHhccCCCcHHHHHHHHhhcCCcchHHHHHHHHHHhcCC
Q 004575 240 TD----ALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDS 311 (744)
Q Consensus 240 ~~----~L~~~d~~ir~~atDILi~iie~dPslvR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk~LLDp 311 (744)
.. .-...+...|..+-+.|-.+.-.+|.++.. +..++..|-+.| .+..++++..+-|||..|+-.
T Consensus 376 ~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~------d~~li~~LF~sL-~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 376 QDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSK------DLSLIEFLFDSL-EDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred ccccccCCCcccHHHHHHHHHHHHHHHccCcccccc------cHHHHHHHHHHh-hCcchHHHHHHHHHHHHHHHH
Confidence 31 123456788999999999999999987633 345777777766 666788999999999888743
No 96
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=21.00 E-value=1.8e+02 Score=21.73 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=28.0
Q ss_pred HHHHhcCcHHHHHHHHcCCChhhhHHHHHHHHHH
Q 004575 228 RDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 261 (744)
Q Consensus 228 k~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~i 261 (744)
+.+++.|.++.+-..|.+.+..++..++=.|-.|
T Consensus 6 ~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 6 QAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp HHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999988777665544
No 97
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=20.89 E-value=1.7e+03 Score=27.81 Aligned_cols=232 Identities=13% Similarity=0.156 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCChhhhHHHHHHHHH
Q 004575 181 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 260 (744)
Q Consensus 181 ~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~~sK~LQ~~~r~~lfk~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~ 260 (744)
+.++.-|++ +...|-.+...|-|+|.-..||+.-.+. +-++.++.-+|+.+-++-.-.+|.|+..
T Consensus 126 d~yiE~lYe-------~~~ek~~~~~~il~La~~~~NL~~l~~n--------e~l~~aL~RvLred~~ks~~l~tnI~~i 190 (708)
T PF05804_consen 126 DEYIELLYE-------DIPEKIRGTSLILQLARNPENLEELVQN--------ETLMSALARVLREDWKKSVELATNIIYI 190 (708)
T ss_pred HHHHHHHhc-------ccHHHHHHHHHHHHHhCCcchHHHHHHh--------HHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q ss_pred HHhcChHH-HHHHHHhccCCCcHHHHHHHHhhcCCcchHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 004575 261 FLNQDPNL-LRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVIT 339 (744)
Q Consensus 261 iie~dPsl-vR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk~LLDp~~m~~~ekd~fL~~FY~~~~~~L~~pL~ 339 (744)
+.-.+--. +...+.+ ...=.+..+.+..+.- +.+....=-.-..-.....+....-++-.++++-..+-+
T Consensus 191 F~~fS~f~~fH~~l~~---~kiG~l~m~iie~Elk---r~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~k--- 261 (708)
T PF05804_consen 191 FFCFSNFSQFHPILAH---YKIGSLCMEIIEHELK---RHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIRK--- 261 (708)
T ss_pred HHHHHhHHHHHHHHHh---ccHHHHHHHHHHHHHH---HHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHHH---
Q ss_pred hcCCccccccccCCCCCcCCCcHHHHHHHHHHHHHHHhcCCccchhHHhhhhHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 004575 340 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 419 (744)
Q Consensus 340 ~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~yriK~~~l~~nll~kVl~Ll~~~~K~L~LaALRFlR~iI 419 (744)
+.+++...+=||.-+...-....| +...+++.-+..+|.+...-|.+.|++|++.+-
T Consensus 262 ---------------------QeqLlrv~~~lLlNLAed~~ve~k--M~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLS 318 (708)
T PF05804_consen 262 ---------------------QEQLLRVAFYLLLNLAEDPRVELK--MVNKGIVSLLVKCLDRENEELLILAVTFLKKLS 318 (708)
T ss_pred ---------------------HHHHHHHHHHHHHHHhcChHHHHH--HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Q ss_pred ccChhHHHHHHHhhCcHHHHHHHHHHhCCCCcchhHHHHHHHHH
Q 004575 420 SRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEY 463 (744)
Q Consensus 420 ~lkDefy~ryiIk~nLf~PVl~~f~~ng~R~NLlnSA~LELfEf 463 (744)
.-++. -..|.+.+++.+++.+|-..... +++.|+-=||..
T Consensus 319 i~~EN--K~~m~~~giV~kL~kLl~s~~~~--l~~~aLrlL~NL 358 (708)
T PF05804_consen 319 IFKEN--KDEMAESGIVEKLLKLLPSENED--LVNVALRLLFNL 358 (708)
T ss_pred CCHHH--HHHHHHcCCHHHHHHHhcCCCHH--HHHHHHHHHHHh
No 98
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=20.79 E-value=6.6e+02 Score=24.54 Aligned_cols=76 Identities=16% Similarity=0.276 Sum_probs=0.0
Q ss_pred hHHhHHHHHHhhHHHHHHHhhcChHHHHHHHHHhCCCCCCHHhHHHHHHHHHHHH-HhhhccChHhHHHHHHHHHhcCc
Q 004575 158 TVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFC-GLSKSLQMVQQLRLFRDLMNEGI 235 (744)
Q Consensus 158 t~s~LnS~IffNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c-~~sK~LQ~~~r~~lfk~Lv~~GL 235 (744)
++.+|.+++-.-....-..+. +..|+.+|-..+.+ .++..-|..++.++++-- .+...-+.+.=...|+.|...|+
T Consensus 61 AL~LLe~~vkNCG~~fh~eva-s~~fl~~l~~l~~~-~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~L~~~G~ 137 (142)
T cd03569 61 ALLLLESCVKNCGTHFHDEVA-SREFMDELKDLIKT-TKNEEVRQKILELIQAWALAFRNKPQLKYVVDTYQILKAEGH 137 (142)
T ss_pred HHHHHHHHHHHCCHHHHHHHh-hHHHHHHHHHHHcc-cCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHcCC
No 99
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=20.41 E-value=7.2e+02 Score=30.53 Aligned_cols=113 Identities=22% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCCCcHHHHHHHHhhcCCcchHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 004575 267 NLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEG 346 (744)
Q Consensus 267 slvR~~i~~qe~~~Ll~lLi~~ll~D~~~gL~~Ql~eaLk~LLDp~~m~~~ekd~fL~~FY~~~~~~L~~pL~~~~p~~~ 346 (744)
..++..+....+..|++-|+.-.+...+ .+++++|..+=+| +++++ ++.|...
T Consensus 26 ~~~~~~~~~~~~~~l~~~l~~y~~~t~s----~~~~~il~~~~~P---------------~~K~~---~~~l~~~----- 78 (668)
T PF04388_consen 26 ALLQELLNSDREPWLVNGLVDYYLSTNS----QRALEILVGVQEP---------------HDKHL---FDKLNDY----- 78 (668)
T ss_pred HHHHHHhhccchHHHHHHHHHHHhhcCc----HHHHHHHHhcCCc---------------cHHHH---HHHHHHH-----
Q ss_pred cccccCCCCCcCCCcHHHHHHHHHHHHHHHhcCCccchhHHhhhhHHHHHHH-hhcccchhHHHHHHHHHHHHH
Q 004575 347 IAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLL-LTRRREKYLVVAAVRFVRTIL 419 (744)
Q Consensus 347 ~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~yriK~~~l~~nll~kVl~-Ll~~~~K~L~LaALRFlR~iI 419 (744)
..++.-=...+=|||++|+.|+.++ +.|+...++..+++ |..-.+...+.+||-++=.+|
T Consensus 79 ------------~~~~~~Rl~~L~Ll~~~v~~qp~~l-~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 79 ------------FVKPSYRLQALTLLGHFVRSQPPWL-YKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred ------------HcCchhHHHHHHHHHHHHhcCCchH-HHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Done!