Query 004575
Match_columns 744
No_of_seqs 192 out of 252
Neff 5.0
Searched_HMMs 29240
Date Tue Mar 26 18:13:02 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004575.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1877-1881//hhsearch_pdb/004575hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xqr_A HSPBP1 protein; armadil 1.0 1 1 47.7 24.6 205 179-422 25-240 (296)
2 4hxt_A De novo protein OR329; 1.0 1 1 46.6 23.1 218 184-444 4-222 (252)
3 3tpo_A Importin subunit alpha- 1.0 1 1 42.6 19.1 243 182-466 204-449 (529)
4 4b8j_A Importin subunit alpha- 1.0 1 1 41.4 25.5 240 182-465 202-442 (528)
5 4db8_A Armadillo-repeat protei 1.0 1 1 41.1 21.8 222 181-445 11-233 (252)
6 2jdq_A Importin alpha-1 subuni 1.0 1 1 40.3 22.2 222 182-445 149-372 (450)
7 3tpo_A Importin subunit alpha- 1.0 1 1 39.7 29.5 77 366-444 311-387 (529)
8 1wa5_B Importin alpha subunit; 1.0 1 1 39.3 26.1 238 182-465 215-456 (530)
9 3ul1_B Importin subunit alpha- 1.0 1 1 38.9 16.9 242 182-466 185-430 (510)
10 3ul1_B Importin subunit alpha- 1.0 1 1 38.0 24.7 76 367-444 293-368 (510)
No 1
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=1.00 E-value=1 Score=47.66 Aligned_cols=205 Identities=11% Similarity=0.149 Sum_probs=137.6
Q ss_pred CCHHHHHHHHHHHCCCC----------CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHH-HHCCCC
Q ss_conf 59689999999808999----------8778689899999999974210582769999999983582999999-972999
Q 004575 179 DDSTFIQELFARLRSPT----------TLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTD-ALQSQD 247 (744)
Q Consensus 179 ~d~~FL~eLF~~l~~~~----------~~~e~krd~v~FL~E~c~~aK~LQ~~~r~~lfk~Lv~~GLl~vi~~-~L~~~d 247 (744)
++.+-|++...++.++. .+.+.|..+..-|.++|. ++. --..+++.|.++.+-. .|++++
T Consensus 25 d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~---~~d------na~~~~~~G~l~~Lv~~lL~s~~ 95 (296)
T 1xqr_A 25 GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE---NMD------NAADFCQLSGMHLLVGRYLEAGA 95 (296)
T ss_dssp HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT---SHH------HHHHHHHTTHHHHHHHTTTTCSS
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH---CHH------HHHHHHHCCCHHHHHHHHHCCCC
T ss_conf 999999999999838873211003468999999999999999982---856------69999985988999999886997
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 02567778999999833928999999850497709999998730688205999999999832888878033779999999
Q 004575 248 KKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFY 327 (744)
Q Consensus 248 ~~ir~~atDILi~iid~DPslvR~~i~~qe~~~LL~lLi~~li~D~~~gLk~Q~~eiLk~LLDp~~m~~~e~d~fL~~FY 327 (744)
..+|..|+.+|..+...+|. .|..+++.. -+..|+..+-.+....++...+-+|..|..... +....|.+
T Consensus 96 ~~vr~~Aa~~Lg~ia~~n~~-~~~~vv~~g---~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~---~~~~~~~~--- 165 (296)
T 1xqr_A 96 AGLRWRAAQLIGTCSQNVAA-IQEQVLGLG---ALRKLLRLLDRDACDTVRVKALFAISCLVREQE---AGLLQFLR--- 165 (296)
T ss_dssp HHHHHHHHHHHHHHHTTCHH-HHHHHHHTT---HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCH---HHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHCCHH-HHHHHHHCC---CHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC---HHHHHHHH---
T ss_conf 99999999999999848999-999999878---799999987669988999999999999986890---77999998---
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 97899999999712995422223699987678808899989889999984088510457855128999998620441268
Q 004575 328 EKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYL 407 (744)
Q Consensus 328 ~~~~~~L~~pL~~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nli~kVl~Ll~~~~K~L 407 (744)
...++.|+..|..+ ...+....|-.|+..+....- .+..++..+++..+..|+.+.+.-+
T Consensus 166 ~ggi~~L~~lL~~~-------------------d~~v~~~A~~aLs~L~~~~~~-~~~~vv~~g~i~~Lv~LL~~~d~~v 225 (296)
T 1xqr_A 166 LDGFSVLMRAMQQQ-------------------VQKLKVKSAFLLQNLLVGHPE-HKGTLCSMGMVQQLVALVRTEHSPF 225 (296)
T ss_dssp TTHHHHHHHHHHSS-------------------CHHHHHHHHHHHHHHHHHCGG-GHHHHHHTTHHHHHHHHHTSCCSTH
T ss_pred CCCHHHHHHHHCCC-------------------CHHHHHHHHHHHHHHHHCCHH-HHHHHHHCCCHHHHHHHHCCCCHHH
T ss_conf 79799999988189-------------------989999999999999858968-8999998687999999876997459
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 999999999997067
Q 004575 408 VVAAVRFVRTILSRH 422 (744)
Q Consensus 408 ~LaAlRFlR~iI~l~ 422 (744)
+-.|++.+.+|+...
T Consensus 226 ~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 226 HEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999998279
No 2
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=1.00 E-value=1 Score=46.62 Aligned_cols=218 Identities=16% Similarity=0.163 Sum_probs=152.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999980899987786898999999999742105827699999999835829999999729990256777899999983
Q 004575 184 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 263 (744)
Q Consensus 184 L~eLF~~l~~~~~~~e~krd~v~FL~E~c~~aK~LQ~~~r~~lfk~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~iid 263 (744)
++.|...+.+++ .+.+..++..|..++.-.. ..-..+++.|.++.+-..|++++..++..++..|..+..
T Consensus 4 i~~L~~~L~~~~--~~~~~~a~~~L~~l~~~~~--------~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 73 (252)
T 4hxt_A 4 VEKLVKLLTSTD--SETQKEAARDLAEIASGPA--------SAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 73 (252)
T ss_dssp HHHHHHHTTCSC--HHHHHHHHHHHHHHHTSCH--------HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCC--HHHHHHHHHHHHHHHCCCC--------HHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf 789999974898--7899999999999856982--------889999987889999999829988999999999999876
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHCC
Q ss_conf 39289999998504977099999987306882059999999998328888780337799999999-78999999997129
Q 004575 264 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVITASC 342 (744)
Q Consensus 264 ~DPslvR~~i~~qe~~~LL~lLi~~li~D~~~gLk~Q~~eiLk~LLDp~~m~~~e~d~fL~~FY~-~~~~~L~~pL~~~~ 342 (744)
.++.. +..+.+ ...+..|+.. +.+.+..++.+...+|..|.... +.....+.+ ..++.|++.+..
T Consensus 74 ~~~~~-~~~~~~---~~~i~~l~~l-l~~~~~~v~~~a~~~L~~l~~~~-------~~~~~~~~~~~~i~~L~~~l~~-- 139 (252)
T 4hxt_A 74 GPDEA-IKAIVD---AGGVEVLVKL-LTSTDSEVQKEAARALANIASGP-------DEAIKAIVDAGGVEVLVKLLTS-- 139 (252)
T ss_dssp SCHHH-HHHHHH---TTHHHHHHHH-TTCSSHHHHHHHHHHHHHHTTSC-------HHHHHHHHHTTHHHHHHHHTTC--
T ss_pred CCHHH-HHHHHH---CCCHHHHHHH-HCCCCHHHHHHHHHHHHHHHCCC-------HHHHHHHHHCCCHHHHHHHHCC--
T ss_conf 98589-999998---8987999998-81897889999999999998599-------8999999988879999999869--
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 95422223699987678808899989889999984088510457855128999998620441268999999999997067
Q 004575 343 PQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRH 422 (744)
Q Consensus 343 p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nli~kVl~Ll~~~~K~L~LaAlRFlR~iI~l~ 422 (744)
....+....+..|+.+........ ..+...+++..+..++...+..++..|++.+..+.. .
T Consensus 140 -----------------~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~ 200 (252)
T 4hxt_A 140 -----------------TDSEVQKEAARALANIASGPDEAI-KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS-G 200 (252)
T ss_dssp -----------------SCHHHHHHHHHHHHHHTTSCHHHH-HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT-S
T ss_pred -----------------CCHHHHHHHHHHHHHHHCCCHHHH-HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHC-C
T ss_conf -----------------988999999999999986999999-999988679999999779988999999999999982-9
Q ss_pred HHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 1589999986186799999998
Q 004575 423 DEHLINHFVKNNLLKPIVDAFV 444 (744)
Q Consensus 423 Defy~ryiIk~nLf~PIl~~f~ 444 (744)
+.-..+.++..+.+.++++++.
T Consensus 201 ~~~~~~~l~~~~~i~~L~~ll~ 222 (252)
T 4hxt_A 201 PTSAIKAIVDAGGVEVLQKLLT 222 (252)
T ss_dssp BHHHHHHHHHTTHHHHHHHGGG
T ss_pred CHHHHHHHHHCCCHHHHHHHHC
T ss_conf 9899999998888899999877
No 3
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=1.00 E-value=1 Score=42.62 Aligned_cols=243 Identities=14% Similarity=0.143 Sum_probs=148.2
Q ss_pred HHHHHHHHHHCCCCCC---HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 8999999980899987---7868989999999997421058276999999998358299999997299902567778999
Q 004575 182 TFIQELFARLRSPTTL---EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDIL 258 (744)
Q Consensus 182 ~FL~eLF~~l~~~~~~---~e~krd~v~FL~E~c~~aK~LQ~~~r~~lfk~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL 258 (744)
..+.-|...+..+..+ ..-.+.++..|..+|.-........ ...|+++++...|.+.+..++..++-.|
T Consensus 204 g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~--------~~~~~lp~L~~LL~~~~~~v~~~a~~aL 275 (529)
T 3tpo_A 204 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD--------AVEQILPTLVRLLHHNDPEVLADSCWAI 275 (529)
T ss_dssp TCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHH--------HHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH--------HHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 87278999873244037689999999999999874132113699--------9864899999995599688999999999
Q ss_pred HHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99983392899999985049770999999873068820599999999983288887803377999999997899999999
Q 004575 259 ILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVI 338 (744)
Q Consensus 259 i~iid~DPslvR~~i~~qe~~~LL~lLi~~li~D~~~gLk~Q~~eiLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL 338 (744)
..+.++++.... .+.. ...+..|++. +.+.+..++.....++..|.... ...+..+++ ...++.|+..|
T Consensus 276 ~~l~~~~~~~~~-~v~~---~g~i~~Lv~l-L~~~~~~v~~~a~~aL~nl~~~~---~~~~~~i~~---~g~l~~L~~LL 344 (529)
T 3tpo_A 276 SYLTDGPNERIE-MVVK---KGVVPQLVKL-LGATELPIVTPALRAIGNIVTGT---DEQTQKVID---AGALAVFPSLL 344 (529)
T ss_dssp HHHHSSCHHHHH-HHHT---TTCHHHHHHH-HTCSCHHHHHHHHHHHHHHTTSC---HHHHHHHHH---TTGGGGHHHHT
T ss_pred HHHHHHHHHHHH-HHHH---CCCHHHHHHH-HCCCCHHHHHHHHHHHHHHHCCC---HHHHHHHHH---CCCHHHHHHHH
T ss_conf 986520005678-9996---3602889988-61897047788999999997164---687788760---24278999998
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 71299542222369998767880889998988999998408851045785512899999862044126899999999999
Q 004575 339 TASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTI 418 (744)
Q Consensus 339 ~~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nli~kVl~Ll~~~~K~L~LaAlRFlR~i 418 (744)
.. ....+....|-.|+.+....... +..++..+++..+..++...+.-++..|...+.++
T Consensus 345 ~~-------------------~~~~i~~~a~~aL~nl~~~~~~~-~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl 404 (529)
T 3tpo_A 345 TN-------------------PKTNIQKEATWTMSNITAGRQDQ-IQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNY 404 (529)
T ss_dssp TC-------------------SSHHHHHHHHHHHHHHHTSCHHH-HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CC-------------------CCHHHHHHHHHHHHHHHCCCHHH-HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 09-------------------98889899999999986163888-88999658379999985699999999999999999
Q ss_pred HCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 706715899999861867999999988188775046799999999993
Q 004575 419 LSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK 466 (744)
Q Consensus 419 I~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSAiLELfEfIr~ 466 (744)
..-.+.-..++|++.+.+.|+++++.. .+.=+-..+|+-++.|.+
T Consensus 405 ~~~~~~~~~~~l~~~g~i~~L~~LL~~---~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 405 TSGGTVEQIVYLVHCGIIEPLMNLLSA---KDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHSCHHHHHHHHHTTCHHHHHHGGGC---SCHHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHCCCHHHHHHHHCC---CCHHHHHHHHHHHHHHHH
T ss_conf 818999999999989689999998669---999999999999999999
No 4
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=1.00 E-value=1 Score=41.35 Aligned_cols=240 Identities=14% Similarity=0.143 Sum_probs=151.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 89999999808999877868989999999997421058276999999998358299999997299902567778999999
Q 004575 182 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 261 (744)
Q Consensus 182 ~FL~eLF~~l~~~~~~~e~krd~v~FL~E~c~~aK~LQ~~~r~~lfk~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~i 261 (744)
..++.|+..+... .+..-++.++..|..+|.-..... . ....|+++.+-..|.+.+..++..++..|..+
T Consensus 202 g~l~~Ll~lL~~~-~~~~v~~~a~~~L~~L~~~~~~~~----~-----~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l 271 (528)
T 4b8j_A 202 GALLPLLAQLNEH-TKLSMLRNATWTLSNFCRGKPQPS----F-----EQTRPALPALARLIHSNDEEVLTDACWALSYL 271 (528)
T ss_dssp TCHHHHHHTCCTT-CCHHHHHHHHHHHHHHHCSSSCCC----H-----HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCCCCCC----H-----HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 8599999997348-988999999999999975899986----9-----99998999999997799878999999999998
Q ss_pred HHCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHH
Q ss_conf 8339289999998504977099999987306882059999999998328888780337799999999-789999999971
Q 004575 262 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVITA 340 (744)
Q Consensus 262 id~DPslvR~~i~~qe~~~LL~lLi~~li~D~~~gLk~Q~~eiLk~LLDp~~m~~~e~d~fL~~FY~-~~~~~L~~pL~~ 340 (744)
..+.+..+... .. ...+..|+.. +.+.+..++.....+|..|.... . .....+.+ ..++.|+..|..
T Consensus 272 ~~~~~~~~~~~-~~---~g~v~~Lv~l-L~~~~~~v~~~a~~~L~nl~~~~---~----~~~~~~~~~~~l~~L~~lL~~ 339 (528)
T 4b8j_A 272 SDGTNDKIQAV-IE---AGVCPRLVEL-LLHPSPSVLIPALRTVGNIVTGD---D----AQTQCIIDHQALPCLLSLLTQ 339 (528)
T ss_dssp TSSCHHHHHHH-HH---TTCHHHHHHH-TTCSCHHHHHHHHHHHHHHTTSC---H----HHHHHHHTTTHHHHHHHHHHS
T ss_pred HCCCHHHHHHH-HH---CCHHHHHHHH-HCCCCHHHHHHHHHHHHHHHCCC---H----HHHHHHHHHHHHHHHHHHHCC
T ss_conf 73887999999-97---4879999999-71887557799999999997298---8----999999974027899999758
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
Q ss_conf 29954222236999876788088999898899999840885104578551289999986204412689999999999970
Q 004575 341 SCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILS 420 (744)
Q Consensus 341 ~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nli~kVl~Ll~~~~K~L~LaAlRFlR~iI~ 420 (744)
+ ....+....|-.|+.++...... ...++..+++..++.++...+..++..|+..+.++..
T Consensus 340 ~------------------~~~~v~~~A~~~L~nl~~~~~~~-~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~ 400 (528)
T 4b8j_A 340 N------------------LKKSIKKEACWTISNITAGNKDQ-IQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATS 400 (528)
T ss_dssp C------------------CCHHHHHHHHHHHHHHHTSCHHH-HHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred C------------------CCHHHHHHHHHHHHHHHCCCHHH-HHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf 9------------------96889999999999997799999-9999977879999999814888899999999999974
Q ss_pred CCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 671589999986186799999998818877504679999999999
Q 004575 421 RHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIR 465 (744)
Q Consensus 421 l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSAiLELfEfIr 465 (744)
-.+.-...++++.+++.++++++... +.-+--.+++.+..|-
T Consensus 401 ~~~~~~~~~l~~~~~i~~L~~lL~~~---d~~v~~~al~~L~~l~ 442 (528)
T 4b8j_A 401 GGSHDQIKYLVSEGCIKPLCDLLICP---DIRIVTVCLEGLENIL 442 (528)
T ss_dssp HSCHHHHHHHHHTTCHHHHHHGGGCS---CHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHCCC---CHHHHHHHHHHHHHHH
T ss_conf 89999999999888889999987489---7899999999999999
No 5
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=1.00 E-value=1 Score=41.08 Aligned_cols=222 Identities=11% Similarity=0.092 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 68999999980899987786898999999999742105827699999999835829999999729990256777899999
Q 004575 181 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 260 (744)
Q Consensus 181 ~~FL~eLF~~l~~~~~~~e~krd~v~FL~E~c~~aK~LQ~~~r~~lfk~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~ 260 (744)
..+..+++..+.+++. +.+..++..|..+..- .....+.+++.|.++.+-..|++++..++..++.+|..
T Consensus 11 ~~~~~~~~~~L~s~~~--~~~~~a~~~L~~~l~~--------~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~ 80 (252)
T 4db8_A 11 GSELPQMTQQLNSDDM--QEQLSATRKFSQILSD--------GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 80 (252)
T ss_dssp TCSHHHHHHHHHSSCS--SHHHHHHHHHHHHHHH--------HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCH--HHHHHHHHHHHHHHCC--------CCCHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 2037999998737978--8999999999999768--------98158999983859999999869988899999999999
Q ss_pred HHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf 98339289999998504977099999987306882059999999998328888780337799999999-78999999997
Q 004575 261 FLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVIT 339 (744)
Q Consensus 261 iid~DPslvR~~i~~qe~~~LL~lLi~~li~D~~~gLk~Q~~eiLk~LLDp~~m~~~e~d~fL~~FY~-~~~~~L~~pL~ 339 (744)
+...++.. +..+.+ ...+..|++. +.+.++.++.+...+|..|..... .+ ...+.+ ..++.|++.|.
T Consensus 81 l~~~~~~~-~~~i~~---~g~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~----~~---~~~~~~~~~i~~L~~lL~ 148 (252)
T 4db8_A 81 IASGGNEQ-IQAVID---AGALPALVQL-LSSPNEQILQEALWALSNIASGGN----EQ---IQAVIDAGALPALVQLLS 148 (252)
T ss_dssp HTTSCHHH-HHHHHH---TTHHHHHHHG-GGCSCHHHHHHHHHHHHHHTTSCH----HH---HHHHHHTTHHHHHHHGGG
T ss_pred HHCCCHHH-HHHHHH---CCCHHHHHHH-HCCCCHHHHHHHHHHHHHHHCCCC----HH---HHHHHHCCCHHHHHHHHH
T ss_conf 82599899-999997---6879999999-859988899999999987506991----59---999998798889999995
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 12995422223699987678808899989889999984088510457855128999998620441268999999999997
Q 004575 340 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 419 (744)
Q Consensus 340 ~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nli~kVl~Ll~~~~K~L~LaAlRFlR~iI 419 (744)
. ....+....+..|+.+....... +..+...+++..++.++...+..++..|++.+..+.
T Consensus 149 ~-------------------~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 149 S-------------------PNEQILQEALWALSNIASGGNEQ-IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 208 (252)
T ss_dssp C-------------------SCHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred C-------------------CCHHHHHHHHHHHHHHHCCCHHH-HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 8-------------------98989999999999998499499-999997787999999977998899999999999985
Q ss_pred CCCHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 06715899999861867999999988
Q 004575 420 SRHDEHLINHFVKNNLLKPIVDAFVA 445 (744)
Q Consensus 420 ~l~Defy~ryiIk~nLf~PIl~~f~~ 445 (744)
. .++.....++..+.+.+++.++..
T Consensus 209 ~-~~~~~~~~~~~~g~i~~L~~ll~~ 233 (252)
T 4db8_A 209 S-GGNEQKQAVKEAGALEKLEQLQSH 233 (252)
T ss_dssp T-SCHHHHHHHHHTTHHHHHHTTTTC
T ss_pred C-CCHHHHHHHHHCCCHHHHHHHHCC
T ss_conf 3-988999999978868999998677
No 6
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=1.00 E-value=1 Score=40.30 Aligned_cols=222 Identities=12% Similarity=0.151 Sum_probs=132.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 8999999980899987786898999999999742-105827699999999835829999999729990256777899999
Q 004575 182 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLS-KSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 260 (744)
Q Consensus 182 ~FL~eLF~~l~~~~~~~e~krd~v~FL~E~c~~a-K~LQ~~~r~~lfk~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~ 260 (744)
..++.|...+.+ ..+.+-|+.++..|..+|.-. .... . .++ .|+++.+-..+.+.|..++..++..|..
T Consensus 149 ~~i~~L~~~l~~-~~~~~v~~~a~~~L~~l~~~~~~~~~----~----~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~ 218 (450)
T 2jdq_A 149 NILPPLLQLFSK-QNRLTMTRNAVWALSNLCRGKSPPPE----F----AKV-SPCLNVLSWLLFVSDTDVLADACWALSY 218 (450)
T ss_dssp TCHHHHHHHTTS-CCCHHHHHHHHHHHHHHHCCSSSCCC----G----GGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCC-CCCHHHHHHHHHHHHHHHCCCCCCCC----H----HHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 879999998667-99788999999999998478999987----9----999-9999999998765878999999999999
Q ss_pred HHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf 98339289999998504977099999987306882059999999998328888780337799999999-78999999997
Q 004575 261 FLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVIT 339 (744)
Q Consensus 261 iid~DPslvR~~i~~qe~~~LL~lLi~~li~D~~~gLk~Q~~eiLk~LLDp~~m~~~e~d~fL~~FY~-~~~~~L~~pL~ 339 (744)
+..+.+.... .+.. ...+..|++.+ .+.+..++.....+|..|..... .....+.+ ..++.|+..+.
T Consensus 219 l~~~~~~~~~-~~~~---~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~-------~~~~~~~~~~~l~~L~~ll~ 286 (450)
T 2jdq_A 219 LSDGPNDKIQ-AVID---AGVCRRLVELL-MHNDYKVVSPALRAVGNIVTGDD-------IQTQVILNCSALQSLLHLLS 286 (450)
T ss_dssp HTSSSHHHHH-HHHH---TTTHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCH-------HHHHHHHTTTHHHHHHHHTT
T ss_pred HHCCCCHHHH-HHHH---CCCHHHHHHHH-CCCCHHHHHHHHHHHHHHHHCCH-------HHHHHHHHCCCHHHHHHHHC
T ss_conf 8779907779-9997---38289999987-79965379999999988860985-------99999998765999999980
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 12995422223699987678808899989889999984088510457855128999998620441268999999999997
Q 004575 340 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 419 (744)
Q Consensus 340 ~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nli~kVl~Ll~~~~K~L~LaAlRFlR~iI 419 (744)
.+ ...+....+..|+.+.......++ .++..+++..++.++...+..++..|...+..+.
T Consensus 287 ~~-------------------~~~vr~~a~~~L~~l~~~~~~~~~-~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~ 346 (450)
T 2jdq_A 287 SP-------------------KESIKKEACWTISNITAGNRAQIQ-TVIDANIFPALISILQTAEFRTRKEAAWAITNAT 346 (450)
T ss_dssp CS-------------------SHHHHHHHHHHHHHHTTSCHHHHH-HHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CC-------------------CHHHHHHHHHHHHHHHCCCHHHHH-HHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 89-------------------887999999999999849999999-9998888999999984588889999999999998
Q ss_pred CCCHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 06715899999861867999999988
Q 004575 420 SRHDEHLINHFVKNNLLKPIVDAFVA 445 (744)
Q Consensus 420 ~l~Defy~ryiIk~nLf~PIl~~f~~ 445 (744)
...+.-..++++..+++.++++++..
T Consensus 347 ~~~~~~~~~~l~~~~~i~~L~~ll~~ 372 (450)
T 2jdq_A 347 SGGSAEQIKYLVELGCIKPLCDLLTV 372 (450)
T ss_dssp HHCCHHHHHHHHHHTCHHHHHHGGGS
T ss_pred CCCCHHHHHHHHHCCCHHHHHHHHCC
T ss_conf 49999999999988779999998647
No 7
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=1.00 E-value=1 Score=39.71 Aligned_cols=77 Identities=10% Similarity=0.039 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 9898899999840885104578551289999986204412689999999999970671589999986186799999998
Q 004575 366 SNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFV 444 (744)
Q Consensus 366 ~~l~ELL~Fcv~~H~yriK~~il~~nli~kVl~Ll~~~~K~L~LaAlRFlR~iI~l~Defy~ryiIk~nLf~PIl~~f~ 444 (744)
...+..|..++.+. -..+..++..+++..+..|+.+.+..++-.|...+..+.. .+......++..+++.+++.++.
T Consensus 311 ~~a~~aL~nl~~~~-~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~-~~~~~~~~v~~~g~i~~Lv~lL~ 387 (529)
T 3tpo_A 311 TPALRAIGNIVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA-GRQDQIQQVVNHGLVPFLVGVLS 387 (529)
T ss_dssp HHHHHHHHHHTTSC-HHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHT-SCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHC-CCHHHHHHHHHCCCHHHHHHHHC
T ss_conf 88999999997164-6877887602427899999809988898999999999861-63888889996583799999856
No 8
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=1.00 E-value=1 Score=39.32 Aligned_cols=238 Identities=12% Similarity=0.129 Sum_probs=153.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 8999999980899987786898999999999742-105827699999999835829999999729990256777899999
Q 004575 182 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLS-KSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 260 (744)
Q Consensus 182 ~FL~eLF~~l~~~~~~~e~krd~v~FL~E~c~~a-K~LQ~~~r~~lfk~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~ 260 (744)
..++.|...+.+ .+.+-++.++..|..+|.-. ...+ .....|+++.+-..|.+.|..++..++..|..
T Consensus 215 ~~l~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~~~~~~---------~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~ 283 (530)
T 1wa5_B 215 NAMEPILGLFNS--NKPSLIRTATWTLSNLCRGKKPQPD---------WSVVSQALPTLAKLIYSMDTETLVDACWAISY 283 (530)
T ss_dssp TCHHHHHHGGGS--CCHHHHHHHHHHHHHHHCCSSSCCC---------HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCC--CCHHHHHHHHHHHHHHHCCCCCCCC---------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 859999999666--9888999999999998679999985---------99997399999999769988999999999999
Q ss_pred HHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf 98339289999998504977099999987306882059999999998328888780337799999999-78999999997
Q 004575 261 FLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVIT 339 (744)
Q Consensus 261 iid~DPslvR~~i~~qe~~~LL~lLi~~li~D~~~gLk~Q~~eiLk~LLDp~~m~~~e~d~fL~~FY~-~~~~~L~~pL~ 339 (744)
+....+..+.. +.. ...+..|+..+ .+.+..++.....+|..|.... . .....+.+ ..++.|+..|.
T Consensus 284 L~~~~~~~~~~-~~~---~~~v~~Lv~lL-~~~~~~v~~~a~~~L~~l~~~~---~----~~~~~~~~~~~l~~L~~lL~ 351 (530)
T 1wa5_B 284 LSDGPQEAIQA-VID---VRIPKRLVELL-SHESTLVQTPALRAVGNIVTGN---D----LQTQVVINAGVLPALRLLLS 351 (530)
T ss_dssp HHSSCHHHHHH-HHH---TTCHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSC---H----HHHHHHHHTTHHHHHHHHTT
T ss_pred HHCCCHHHHHH-HHH---CCCHHHHHHHH-CCCCHHHHHHHHHHHHHHHCCC---H----HHHHHHHHCCHHHHHHHHHC
T ss_conf 86798899999-994---58389999997-7997555799999999997299---9----99999997463999999976
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 12995422223699987678808899989889999984088510457855128999998620441268999999999997
Q 004575 340 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 419 (744)
Q Consensus 340 ~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nli~kVl~Ll~~~~K~L~LaAlRFlR~iI 419 (744)
.+ ...+....|..|+.+.......++ .++..+++..++.++...+..++..|+..+..+.
T Consensus 352 ~~-------------------~~~vr~~A~~aL~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~ 411 (530)
T 1wa5_B 352 SP-------------------KENIKKEACWTISNITAGNTEQIQ-AVIDANLIPPLVKLLEVAEYKTKKEACWAISNAS 411 (530)
T ss_dssp CS-------------------CHHHHHHHHHHHHHHTTSCHHHHH-HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CC-------------------CHHHHHHHHHHHHHHHCCCHHHHH-HHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99-------------------788999999999999759999999-9998888999999985698889999999999998
Q ss_pred CCCHH--HHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 06715--89999986186799999998818877504679999999999
Q 004575 420 SRHDE--HLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIR 465 (744)
Q Consensus 420 ~l~De--fy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSAiLELfEfIr 465 (744)
...+. -+.++++..+++.+++.++... +.-+-.++++.+..+-
T Consensus 412 ~~~~~~~~~~~~l~~~~~l~~L~~ll~~~---~~~v~~~al~aL~~l~ 456 (530)
T 1wa5_B 412 SGGLQRPDIIRYLVSQGCIKPLCDLLEIA---DNRIIEVTLDALENIL 456 (530)
T ss_dssp HHTTTCTHHHHHHHHTTCHHHHHHHTTTC---CHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHCCCHHHHHHHHHCC---CHHHHHHHHHHHHHHH
T ss_conf 16998199999999888899999998089---7899999999999999
No 9
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=1.00 E-value=1 Score=38.94 Aligned_cols=242 Identities=13% Similarity=0.130 Sum_probs=147.9
Q ss_pred HHHHHHHHHHCCCCCC---HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 8999999980899987---7868989999999997421058276999999998358299999997299902567778999
Q 004575 182 TFIQELFARLRSPTTL---EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDIL 258 (744)
Q Consensus 182 ~FL~eLF~~l~~~~~~---~e~krd~v~FL~E~c~~aK~LQ~~~r~~lfk~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL 258 (744)
..+.-|...+..++.+ ..-.+.++..|..+|.-........ ...|+++++...|.+.+..++..++-.|
T Consensus 185 G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~--------~~~~~lp~L~~LL~~~~~~v~~~A~~aL 256 (510)
T 3ul1_B 185 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD--------AVEQILPTLVRLLHHNDPEVLADSCWAI 256 (510)
T ss_dssp TCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHH--------HHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHH--------HHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 98179999997346104459999999999998753111025799--------9976999999998168799999999999
Q ss_pred HHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH-HHHHHHH
Q ss_conf 999833928999999850497709999998730688205999999999832888878033779999999978-9999999
Q 004575 259 ILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKH-LGQLIDV 337 (744)
Q Consensus 259 i~iid~DPslvR~~i~~qe~~~LL~lLi~~li~D~~~gLk~Q~~eiLk~LLDp~~m~~~e~d~fL~~FY~~~-~~~L~~p 337 (744)
..+.++.+..... +.. ...+..|++. +.+.+..++.....++..+.... ...+..+ .+.. ++.|+.
T Consensus 257 ~~L~~~~~~~~~~-i~~---~g~i~~Lv~l-L~~~~~~v~~~al~aL~nl~~~~---~~~~~~i----~~~g~l~~L~~- 323 (510)
T 3ul1_B 257 SYLTDGPNERIEM-VVK---KGVVPQLVKL-LGATELPIVTPALRAIGNIVTGT---DEQTQKV----IDAGALAVFPS- 323 (510)
T ss_dssp HHHTSSCHHHHHH-HHT---TTCHHHHHHH-HTCSCHHHHHHHHHHHHHHTTSC---HHHHHHH----HHTTGGGGCC--
T ss_pred HHHHHCHHHHHHH-HHH---CCCCHHHHHH-HCCCCHHHHHHHHHHHHHHHCCC---HHHHHHH----HHCCCHHHHHH-
T ss_conf 9986021566789-986---3651255566-13887134268899998862377---8888887----61241278888-
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 97129954222236999876788088999898899999840885104578551289999986204412689999999999
Q 004575 338 ITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRT 417 (744)
Q Consensus 338 L~~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nli~kVl~Ll~~~~K~L~LaAlRFlR~ 417 (744)
+ .......+....|-.|+.+....... +..++..+++..++.++...+.-++-.|...+.+
T Consensus 324 ---------L---------L~~~~~~v~~~A~~aL~nl~a~~~~~-~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~N 384 (510)
T 3ul1_B 324 ---------L---------LTNPKTNIQKEATWTMSNITAGRQDQ-IQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN 384 (510)
T ss_dssp ---------C---------TTCSSHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred ---------H---------HCCCCHHHHHHHHHHHHHHHCCCHHH-HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf ---------7---------24998899999999999997084989-9998853878899999738988999999999999
Q ss_pred HHCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9706715899999861867999999988188775046799999999993
Q 004575 418 ILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK 466 (744)
Q Consensus 418 iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSAiLELfEfIr~ 466 (744)
+..-.+.-...++++.+.+.|+++++.. .+.-+-..+|+.++.|-+
T Consensus 385 l~~~~~~~~~~~L~~~g~i~~L~~LL~~---~d~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 385 YTSGGTVEQIVYLVHCGIIEPLMNLLSA---KDTKIIQVILDAISNIFQ 430 (510)
T ss_dssp HHHHCCHHHHHHHHHTTCHHHHHHGGGC---SCHHHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHCCCHHHHHHHHCC---CCHHHHHHHHHHHHHHHH
T ss_conf 8706999999999979789999998669---999999999999999999
No 10
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=1.00 E-value=1 Score=38.02 Aligned_cols=76 Identities=11% Similarity=0.033 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 898899999840885104578551289999986204412689999999999970671589999986186799999998
Q 004575 367 NICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFV 444 (744)
Q Consensus 367 ~l~ELL~Fcv~~H~yriK~~il~~nli~kVl~Ll~~~~K~L~LaAlRFlR~iI~l~Defy~ryiIk~nLf~PIl~~f~ 444 (744)
..+..|..++... -..+..++..+++..+..|+...+..++-.|...+..+.. .+......++..+++.+++.++.
T Consensus 293 ~al~aL~nl~~~~-~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a-~~~~~~~~v~~~g~i~~Lv~lL~ 368 (510)
T 3ul1_B 293 PALRAIGNIVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA-GRQDQIQQVVNHGLVPFLVGVLS 368 (510)
T ss_dssp HHHHHHHHHTTSC-HHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTT-SCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-HHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHC-CCHHHHHHHHHCCCHHHHHHHHC
T ss_conf 8899998862377-8888887612412788887249988999999999999970-84989999885387889999973
Done!