Query 004576
Match_columns 744
No_of_seqs 323 out of 709
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 01:40:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004576.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004576hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00188 enhanced disease resi 100.0 4E-179 9E-184 1508.6 63.0 672 7-742 3-712 (719)
2 PF07059 DUF1336: Protein of u 100.0 9.3E-74 2E-78 587.3 17.7 207 528-735 1-227 (227)
3 cd08914 START_STARD15-like Lip 100.0 4.6E-37 1E-41 316.1 20.9 197 132-344 11-216 (236)
4 cd08913 START_STARD14-like Lip 100.0 4.3E-36 9.3E-41 311.2 22.7 214 102-348 2-225 (240)
5 cd08873 START_STARD14_15-like 100.0 5.3E-36 1.2E-40 308.8 21.6 189 132-334 10-206 (235)
6 cd08904 START_STARD6-like Lipi 100.0 2.5E-34 5.5E-39 291.8 22.9 183 169-362 20-203 (204)
7 cd08868 START_STARD1_3_like Ch 100.0 8.9E-33 1.9E-37 280.9 24.5 184 168-364 21-207 (208)
8 cd08869 START_RhoGAP C-termina 100.0 2E-32 4.2E-37 276.8 22.7 177 170-364 18-196 (197)
9 cd08906 START_STARD3-like Chol 100.0 2.4E-32 5.3E-37 278.7 21.8 187 165-364 19-208 (209)
10 cd08909 START_STARD13-like C-t 100.0 2.7E-32 5.9E-37 276.5 19.8 175 171-363 27-203 (205)
11 cd08874 START_STARD9-like C-te 100.0 9.1E-32 2E-36 273.4 21.0 189 159-363 10-204 (205)
12 cd08903 START_STARD5-like Lipi 100.0 3.6E-31 7.8E-36 269.8 23.3 184 169-363 20-206 (208)
13 cd08867 START_STARD4_5_6-like 100.0 6.9E-31 1.5E-35 266.6 22.8 182 170-362 21-205 (206)
14 cd08902 START_STARD4-like Lipi 100.0 7.5E-31 1.6E-35 262.7 19.9 180 169-362 21-201 (202)
15 cd08907 START_STARD8-like C-te 100.0 1.1E-30 2.5E-35 262.0 17.6 179 169-364 25-204 (205)
16 cd08871 START_STARD10-like Lip 100.0 8.9E-30 1.9E-34 261.4 22.1 181 168-364 20-202 (222)
17 cd08905 START_STARD1-like Chol 100.0 6.9E-30 1.5E-34 260.6 20.0 183 169-364 23-208 (209)
18 smart00234 START in StAR and p 100.0 6.1E-29 1.3E-33 250.4 23.3 184 167-364 15-202 (206)
19 cd08872 START_STARD11-like Cer 100.0 3.6E-29 7.8E-34 259.5 21.4 190 163-367 19-229 (235)
20 cd08911 START_STARD7-like Lipi 100.0 1.9E-28 4.2E-33 249.5 22.3 180 169-362 19-204 (207)
21 cd08908 START_STARD12-like C-t 100.0 2.4E-28 5.2E-33 247.9 18.8 173 172-363 28-202 (204)
22 PF01852 START: START domain; 100.0 4.9E-27 1.1E-31 236.1 23.4 187 167-366 15-204 (206)
23 cd08910 START_STARD2-like Lipi 100.0 1.5E-27 3.3E-32 243.0 19.8 178 169-363 23-205 (207)
24 cd08870 START_STARD2_7-like Li 99.9 1.7E-26 3.6E-31 235.4 22.0 178 171-363 22-207 (209)
25 cd00177 START Lipid-binding ST 99.9 5.5E-26 1.2E-30 223.7 23.1 159 171-341 15-173 (193)
26 cd08876 START_1 Uncharacterize 99.9 1.4E-25 3.1E-30 224.5 22.2 181 166-362 12-194 (195)
27 cd08877 START_2 Uncharacterize 99.9 2.7E-24 5.8E-29 219.8 17.5 187 162-363 13-213 (215)
28 KOG2761 START domain-containin 99.9 4E-21 8.7E-26 193.9 18.2 166 167-343 25-195 (219)
29 KOG1739 Serine/threonine prote 99.6 2.4E-16 5.3E-21 171.9 6.6 170 160-338 392-578 (611)
30 cd08875 START_ArGLABRA2_like C 99.4 9.1E-13 2E-17 135.9 14.1 128 201-335 59-199 (229)
31 cd08864 SRPBCC_DUF3074 DUF3074 99.3 3.5E-11 7.6E-16 123.3 14.2 131 227-362 64-206 (208)
32 cd01246 PH_oxysterol_bp Oxyste 98.8 5.7E-08 1.2E-12 85.0 10.6 91 10-113 1-91 (91)
33 smart00233 PH Pleckstrin homol 98.7 2.3E-07 5E-12 79.7 11.5 100 9-114 2-101 (102)
34 PF00169 PH: PH domain; Inter 98.6 2E-07 4.3E-12 81.7 9.7 100 9-114 2-103 (104)
35 cd07813 COQ10p_like Coenzyme Q 98.6 4.9E-07 1.1E-11 85.4 12.0 134 205-363 2-136 (138)
36 cd01251 PH_centaurin_alpha Cen 98.6 3.2E-07 7E-12 84.0 9.7 100 10-116 1-102 (103)
37 cd08866 SRPBCC_11 Ligand-bindi 98.4 8.3E-06 1.8E-10 77.1 15.1 142 205-363 2-143 (144)
38 cd01260 PH_CNK Connector enhan 98.4 2.2E-06 4.8E-11 76.8 10.2 93 10-113 2-96 (96)
39 cd01238 PH_Tec Tec pleckstrin 98.4 1.2E-06 2.6E-11 80.6 7.7 95 10-112 2-105 (106)
40 cd01233 Unc104 Unc-104 pleckst 98.3 3.2E-06 7E-11 76.8 9.9 94 10-114 4-98 (100)
41 PF11274 DUF3074: Protein of u 98.3 1.9E-05 4.2E-10 79.8 15.0 139 211-355 13-177 (184)
42 cd00900 PH-like Pleckstrin hom 98.3 6.6E-06 1.4E-10 70.6 9.7 97 10-113 1-99 (99)
43 cd01257 PH_IRS Insulin recepto 98.2 9.2E-06 2E-10 74.5 10.8 90 9-112 3-100 (101)
44 cd01250 PH_centaurin Centaurin 98.2 6.4E-06 1.4E-10 72.4 9.5 93 10-113 1-94 (94)
45 cd01235 PH_SETbf Set binding f 98.2 8.5E-06 1.8E-10 73.2 10.4 93 10-114 1-101 (101)
46 cd01252 PH_cytohesin Cytohesin 98.2 1.2E-05 2.7E-10 75.8 11.3 96 10-116 2-115 (125)
47 cd01247 PH_GPBP Goodpasture an 98.2 1.4E-05 3.1E-10 71.6 10.6 88 10-112 1-90 (91)
48 PF15413 PH_11: Pleckstrin hom 98.2 4.4E-06 9.4E-11 77.8 7.2 95 10-113 1-112 (112)
49 cd01265 PH_PARIS-1 PARIS-1 ple 98.2 1.4E-05 3E-10 72.2 9.8 91 10-113 1-93 (95)
50 cd01219 PH_FGD FGD (faciogenit 98.1 2.9E-05 6.2E-10 70.9 11.7 98 9-116 3-101 (101)
51 cd07819 SRPBCC_2 Ligand-bindin 98.1 9.4E-05 2E-09 69.0 14.8 135 203-361 3-139 (140)
52 cd01266 PH_Gab Gab (Grb2-assoc 97.9 4.9E-05 1.1E-09 70.0 9.5 95 11-112 2-106 (108)
53 cd01244 PH_RasGAP_CG9209 RAS_G 97.9 4.2E-05 9E-10 69.8 8.6 84 20-113 15-98 (98)
54 cd00821 PH Pleckstrin homology 97.9 3.7E-05 8E-10 65.3 7.7 94 10-113 1-96 (96)
55 cd01220 PH_CDEP Chondrocyte-de 97.9 0.00013 2.8E-09 66.7 10.6 94 10-115 4-98 (99)
56 cd01264 PH_melted Melted pleck 97.8 0.00011 2.4E-09 67.3 9.4 94 10-113 2-100 (101)
57 cd01241 PH_Akt Akt pleckstrin 97.8 0.00015 3.3E-09 66.2 10.1 92 10-113 3-101 (102)
58 KOG2200 Tumour suppressor prot 97.8 3.9E-06 8.4E-11 95.3 -0.5 91 262-365 574-665 (674)
59 cd05018 CoxG Carbon monoxide d 97.8 0.00053 1.1E-08 64.2 13.4 114 204-336 3-116 (144)
60 cd01254 PH_PLD Phospholipase D 97.8 0.00015 3.1E-09 68.5 9.4 80 28-113 34-121 (121)
61 cd01256 PH_dynamin Dynamin ple 97.7 0.00018 3.9E-09 65.1 8.8 94 10-113 3-104 (110)
62 PF15409 PH_8: Pleckstrin homo 97.6 0.00018 3.8E-09 64.6 7.2 84 12-113 1-88 (89)
63 cd01253 PH_beta_spectrin Beta- 97.6 0.00037 7.9E-09 63.4 9.0 95 10-112 1-103 (104)
64 cd08861 OtcD1_ARO-CYC_like N-t 97.6 0.00084 1.8E-08 63.3 11.7 137 206-363 3-141 (142)
65 cd01236 PH_outspread Outspread 97.5 0.00076 1.7E-08 62.2 9.6 92 10-111 1-101 (104)
66 cd01237 Unc112 Unc-112 pleckst 97.4 0.00096 2.1E-08 61.6 9.2 89 20-114 13-103 (106)
67 PF03364 Polyketide_cyc: Polyk 97.4 0.0047 1E-07 57.4 14.0 109 210-339 1-112 (130)
68 cd01245 PH_RasGAP_CG5898 RAS G 97.3 0.00065 1.4E-08 62.1 7.5 87 12-112 3-97 (98)
69 cd07821 PYR_PYL_RCAR_like Pyra 97.3 0.0091 2E-07 55.2 15.0 138 203-362 2-139 (140)
70 cd08860 TcmN_ARO-CYC_like N-te 97.1 0.02 4.2E-07 55.7 15.9 137 206-364 5-144 (146)
71 cd07817 SRPBCC_8 Ligand-bindin 97.1 0.021 4.6E-07 53.1 15.2 134 204-362 2-137 (139)
72 cd01263 PH_anillin Anillin Ple 97.0 0.0033 7.2E-08 59.7 9.2 103 10-113 3-122 (122)
73 KOG0930 Guanine nucleotide exc 97.0 0.0022 4.7E-08 67.8 7.7 94 10-116 262-377 (395)
74 PRK10724 hypothetical protein; 96.7 0.046 9.9E-07 54.1 14.5 115 202-338 15-129 (158)
75 PF10604 Polyketide_cyc2: Poly 96.6 0.4 8.7E-06 44.2 19.1 132 204-362 4-138 (139)
76 PF12814 Mcp5_PH: Meiotic cell 96.3 0.041 8.9E-07 52.2 10.7 101 10-115 11-122 (123)
77 cd01230 PH_EFA6 EFA6 Pleckstri 96.2 0.032 7E-07 52.6 9.7 100 10-116 2-113 (117)
78 cd08865 SRPBCC_10 Ligand-bindi 95.7 0.34 7.4E-06 44.5 14.0 109 206-337 3-113 (140)
79 cd07823 SRPBCC_5 Ligand-bindin 95.7 0.29 6.2E-06 46.8 13.9 139 206-362 3-144 (146)
80 cd07812 SRPBCC START/RHO_alpha 95.4 0.77 1.7E-05 40.8 14.9 112 205-337 2-115 (141)
81 cd01239 PH_PKD Protein kinase 95.3 0.077 1.7E-06 49.8 8.0 52 10-67 2-53 (117)
82 cd07824 SRPBCC_6 Ligand-bindin 95.3 0.58 1.3E-05 44.7 14.4 109 204-335 3-114 (146)
83 cd01218 PH_phafin2 Phafin2 Pl 95.0 0.23 5E-06 46.0 10.1 89 20-116 11-100 (104)
84 cd07818 SRPBCC_1 Ligand-bindin 93.9 1.3 2.9E-05 41.9 13.3 38 203-241 3-40 (150)
85 cd08862 SRPBCC_Smu440-like Lig 93.5 4.3 9.4E-05 37.4 15.7 40 204-244 3-42 (138)
86 cd01224 PH_Collybistin Collybi 93.1 2.1 4.6E-05 40.1 12.5 98 10-112 4-105 (109)
87 PF06240 COXG: Carbon monoxide 92.8 5.4 0.00012 38.2 15.5 114 207-339 2-115 (140)
88 cd01223 PH_Vav Vav pleckstrin 92.1 1 2.2E-05 42.5 9.1 90 27-117 20-114 (116)
89 PF15410 PH_9: Pleckstrin homo 91.5 0.73 1.6E-05 43.3 7.5 99 10-115 2-119 (119)
90 cd07822 SRPBCC_4 Ligand-bindin 91.5 11 0.00024 34.5 15.6 36 204-240 2-37 (141)
91 cd01261 PH_SOS Son of Sevenles 89.3 4.6 9.9E-05 38.0 10.7 98 9-116 5-111 (112)
92 cd07814 SRPBCC_CalC_Aha1-like 88.4 16 0.00034 33.6 13.8 137 204-363 2-138 (139)
93 KOG3845 MLN, STAR and related 88.1 0.1 2.2E-06 55.2 -1.3 138 173-319 27-164 (241)
94 KOG0690 Serine/threonine prote 85.5 0.81 1.8E-05 50.3 3.8 100 5-115 12-117 (516)
95 cd01221 PH_ephexin Ephexin Ple 84.9 9.5 0.0002 36.7 10.3 99 10-110 5-118 (125)
96 COG2867 Oligoketide cyclase/li 84.6 6.7 0.00015 38.5 9.2 115 203-338 3-117 (146)
97 cd01242 PH_ROK Rok (Rho- assoc 84.3 8.3 0.00018 36.3 9.3 102 9-114 1-110 (112)
98 cd01249 PH_oligophrenin Oligop 83.9 8.3 0.00018 35.9 9.1 94 10-111 1-102 (104)
99 cd01222 PH_clg Clg (common-sit 82.6 11 0.00023 34.6 9.3 81 27-115 16-96 (97)
100 cd07816 Bet_v1-like Ligand-bin 82.6 48 0.001 32.0 15.2 119 204-335 3-122 (148)
101 cd07820 SRPBCC_3 Ligand-bindin 82.3 35 0.00076 32.0 13.2 108 206-334 3-113 (137)
102 cd07825 SRPBCC_7 Ligand-bindin 81.4 46 0.001 31.0 15.5 30 204-234 2-31 (144)
103 cd01259 PH_Apbb1ip Apbb1ip (Am 77.7 6.5 0.00014 37.1 6.2 102 10-114 2-108 (114)
104 PF15408 PH_7: Pleckstrin homo 77.6 1.5 3.2E-05 39.3 1.9 91 11-111 1-94 (104)
105 COG3427 Carbon monoxide dehydr 77.4 56 0.0012 32.3 12.8 111 204-341 3-121 (146)
106 cd01258 PH_syntrophin Syntroph 75.0 8.7 0.00019 36.0 6.4 100 11-112 2-107 (108)
107 cd01243 PH_MRCK MRCK (myotonic 73.6 54 0.0012 31.5 11.2 104 9-113 3-118 (122)
108 PTZ00267 NIMA-related protein 68.7 12 0.00027 42.9 7.2 93 9-114 378-476 (478)
109 PLN02866 phospholipase D 67.2 22 0.00047 44.9 9.1 81 28-116 219-309 (1068)
110 cd01225 PH_Cool_Pix Cool (clon 66.0 39 0.00084 31.9 8.4 78 25-113 26-108 (111)
111 cd01234 PH_CADPS CADPS (Ca2+-d 65.0 12 0.00027 34.9 4.9 98 9-113 3-109 (117)
112 COG5637 Predicted integral mem 64.7 1.1E+02 0.0023 31.6 11.7 134 203-364 71-210 (217)
113 TIGR01599 PYST-A Plasmodium yo 61.7 2.1E+02 0.0046 29.9 19.3 119 202-327 59-208 (208)
114 KOG4424 Predicted Rho/Rac guan 53.2 29 0.00063 41.0 6.4 93 9-116 273-371 (623)
115 PLN02647 acyl-CoA thioesterase 52.5 30 0.00066 39.9 6.5 86 17-109 323-429 (437)
116 COG1607 Acyl-CoA hydrolase [Li 48.0 20 0.00043 35.8 3.6 96 9-111 31-147 (157)
117 KOG2059 Ras GTPase-activating 47.6 25 0.00054 42.5 4.8 95 9-115 566-665 (800)
118 cd01232 PH_TRIO Trio pleckstri 44.0 1.8E+02 0.004 27.4 9.2 88 24-115 21-113 (114)
119 PF14593 PH_3: PH domain; PDB: 40.5 1.3E+02 0.0028 28.1 7.5 85 9-116 14-101 (104)
120 KOG3723 PH domain protein Melt 38.3 16 0.00035 42.9 1.5 93 17-117 745-839 (851)
121 PLN02647 acyl-CoA thioesterase 31.0 1.8E+02 0.0039 33.7 8.3 69 45-113 156-240 (437)
122 cd01227 PH_Dbs Dbs (DBL's big 29.4 4.3E+02 0.0094 25.7 9.4 91 24-117 26-118 (133)
123 cd01262 PH_PDK1 3-Phosphoinosi 29.1 2E+02 0.0043 26.3 6.5 74 21-113 10-87 (89)
124 KOG1090 Predicted dual-specifi 28.8 36 0.00078 42.6 2.3 94 8-114 1634-1731(1732)
125 cd08893 SRPBCC_CalC_Aha1-like_ 27.9 54 0.0012 30.0 2.9 30 204-234 2-31 (136)
126 cd00837 EVH1 EVH1 (Enabled, Va 27.1 3.8E+02 0.0083 24.5 8.3 25 90-114 80-104 (104)
127 PTZ00283 serine/threonine prot 26.9 75 0.0016 36.9 4.5 37 76-114 453-489 (496)
128 PF11687 DUF3284: Domain of un 26.5 5.1E+02 0.011 24.4 9.3 107 204-339 1-109 (120)
129 COG3832 Uncharacterized conser 26.4 5.8E+02 0.013 24.7 9.9 32 201-233 7-38 (149)
130 KOG0976 Rho/Rac1-interacting s 26.2 33 0.00071 41.9 1.4 107 8-115 812-920 (1265)
131 cd01228 PH_BCR-related BCR (br 24.0 3.1E+02 0.0067 25.4 6.8 80 21-113 11-93 (96)
132 cd08899 SRPBCC_CalC_Aha1-like_ 22.3 66 0.0014 31.2 2.5 32 201-233 10-41 (157)
133 cd01207 Ena-Vasp Enabled-VASP- 22.3 2E+02 0.0044 27.2 5.5 29 88-116 81-109 (111)
134 cd08898 SRPBCC_CalC_Aha1-like_ 21.4 84 0.0018 29.1 3.0 31 204-235 3-33 (145)
135 KOG1117 Rho- and Arf-GTPase ac 21.4 1.2E+02 0.0026 37.8 4.7 82 23-113 1047-1130(1186)
136 KOG3549 Syntrophins (type gamm 20.9 2.1E+02 0.0046 32.2 6.1 101 9-115 282-387 (505)
137 KOG2763 Acyl-CoA thioesterase 20.5 1.3E+02 0.0029 33.9 4.6 76 37-116 64-154 (357)
138 KOG1117 Rho- and Arf-GTPase ac 20.0 2.7E+02 0.0059 34.9 7.2 95 12-117 496-600 (1186)
No 1
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=100.00 E-value=4.2e-179 Score=1508.61 Aligned_cols=672 Identities=35% Similarity=0.614 Sum_probs=601.3
Q ss_pred cceeeeEEEEEeecccccccccceeeEeeceeeeeeecCCCCCCCcceeeeeeccceEEecCccceeeCcEEEEEEEecC
Q 004576 7 ESKIEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNS 86 (744)
Q Consensus 7 ~~~~~gWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~ 86 (744)
..+|||||||||+||||++|||+|||||+|++|+||||+|+++ ++|||+|+||+||||||+||++|||++||||++||+
T Consensus 3 ~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~-~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Yn~ 81 (719)
T PLN00188 3 KVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNK 81 (719)
T ss_pred cceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccc-cccceeeccCCCceEeecCceEEcCceEEEEEEecC
Confidence 4579999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCcceEEEecCCHHHHHHHHHHHHHHHHhcCCCC--------CCcc-----------ccc-----------ccccCCcc
Q 004576 87 LDHNEKLKLGARSPEEAAKWIRSLQEAAVKECPCP--------TYNF-----------VAV-----------SKRRWPSL 136 (744)
Q Consensus 87 ~~~~~~~~~~~~~~eea~~w~~~~~~a~~~~~~~~--------~~~~-----------~~~-----------~~~~~~~~ 136 (744)
++|++|++|||+|+|||++||+||++|++++.... ...+ .++ .+.+++++
T Consensus 82 ~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 161 (719)
T PLN00188 82 KEKYHRITMAAFNIQEALIWKEKIESVIDQHQDSQVPNGNKYASFEYKSGMDNGRTASSSDHESQFSAQEDEEDTHRDLL 161 (719)
T ss_pred CCccccEEEecCCHHHHHHHHHHHHHHHhhhccccccccccccceeeccccccccccccccccccccccccccccCcccc
Confidence 99999999999999999999999999999752111 0000 011 12356778
Q ss_pred eeeeccCCCCCccccCCCCccc--cccccccccccCCCCEEEEeeCCeEEEEEeecCCCCCccCCCCceEEEEEEecCCH
Q 004576 137 RLYVSKRSDYKYSGDWTLGSSI--RSEATASDVIAPSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTS 214 (744)
Q Consensus 137 r~~~~~~~~~~~s~~w~~~~~~--~n~~~~~dv~a~s~W~l~~~~nGVrVy~~~~e~~~~~~~~s~~~~~Ka~~vV~asp 214 (744)
|+++||+||+.+.++||...+. +|.++.+|+++.+.|++++|+||+|||++..+.++.++ +.+++|||+|+|+++|
T Consensus 162 r~~tig~gp~~s~~~~t~~~~~~~~~~~~~~d~~~~~~Wr~~~c~NGlRiF~e~~~~~~~~~--~~~~~mKavGVV~asp 239 (719)
T PLN00188 162 RRTTIGNGPPDSVLDWTKEFDSELSNQNSNNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPR--SCSRAMKAVGVVEATC 239 (719)
T ss_pred eeeeccCCCcchhcccccccCccccccCCCccccccCCeEEEEeeccceeehhhhccccccc--cCCceeEEEEEecCCH
Confidence 9999999999999999876653 48899999999999999999999999999988887765 4569999999999999
Q ss_pred HHHHHHHHcCCCCccccccccceeEEEEecCCcEEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEEEEEeccCCCC
Q 004576 215 EAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYVILYHSVNHKK 294 (744)
Q Consensus 215 e~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~ 294 (744)
++||++||+++..|.+||.++.++++||+||+||+|+|.++++.|+|+.+++||||++|+|++.+||+|+|+++|++||+
T Consensus 240 E~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGsYvil~~Sv~Hp~ 319 (719)
T PLN00188 240 EEIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHEN 319 (719)
T ss_pred HHHHHHHhccCcccccchhcccceEEEEEecCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCCcEEEeeeeeecCC
Confidence 99999999998789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEEeceeEEEEeCC---CCCceEEEEEEEEeCCcccccccccchhhHHHHHHHHHHHHHHHHHhhcCCCcc
Q 004576 295 CPKQKGYVRACLKSGGFVITPSN---QGKQSIVKHMLAVDWKYWKLYLRPSSARSITIRMLERVAALRELFQAKAGNTSS 371 (744)
Q Consensus 295 ~Pp~~G~VRa~i~~sGwvI~Pl~---~~~~c~VTyi~qvDpkGwiP~~~~~~~~~~~~~mL~~va~LRe~~~~~~~~~~~ 371 (744)
|||++|||||++++|||+|.|++ +.++|+|+|++|+|+|||+|+|+++++++++++||++||+|||||+++++.++
T Consensus 320 cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~~y~~s~~~~~~l~mL~~VAgLrE~~~~~~~~~~- 398 (719)
T PLN00188 320 CGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYIPSFQQHCLLQMLNSVAGLREWFSQTDERGA- 398 (719)
T ss_pred CCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCccccccCccccccchHHHHHHHHHHHHHHhcCcccCc-
Confidence 99999999999999999999984 33689999999999999999999999999999999999999999999998777
Q ss_pred ccccCCcccccccccccch--hhhhhccccchhHHHHHHHHHhhhccCCCCCCCCCCCCCCccccCCCCCCCcccCCCCC
Q 004576 372 EFLSRGSTREIKASQDSEL--SEDIQLKNEEDTEIEIQKMEEIRKTEKDAPFTEEKPSSGRASLMGINDASDEFFDVPEA 449 (744)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (744)
.+|++++.+++.. .++.....++. ....+.....+.+++++++++|+||||++||+
T Consensus 399 ------~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~dE~~~~~e~ 456 (719)
T PLN00188 399 ------PPRIPVMVNMASASVSSKKNQKPQES----------------SPSLDQTNAASRNSVMMDEDSDDDEEFQIPES 456 (719)
T ss_pred ------cccceeeccccccccccccccccccc----------------ccccccccccchhhhhhccccccchhccCCCc
Confidence 7888888777544 22222222111 12222333445568899999999999999998
Q ss_pred ccccccCcccccCCCCCCCCCCCcccccccccchhhhhhhhhcccCccccCCCCCCCCCC-cccccccccCCCCCCCCce
Q 004576 450 YSDHMENDWSLEVSPELQPLSAPQSKLASAAGFVKKLHDLAVHKKGCTDLQEVPNEDEKS-WSYGATLQTDSSFTSPCSW 528 (744)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~W 528 (744)
+++.+ +.+ +.+..+. ..+.+++.+| ++|+|+|++++.+++.+||
T Consensus 457 ~~~~~------------------~~k-~~~~~~~----------------~~~~~~~~~d~~~~~g~l~~~~~~~~~ncW 501 (719)
T PLN00188 457 EQEPE------------------TTK-NETKDTA----------------MEEEPQDKIDLSCFSGNLRRDDRDKARDCW 501 (719)
T ss_pred ccccc------------------ccc-ccccccc----------------cccCCcccccccccccccccCCCCCCCCCc
Confidence 76210 001 0000000 1334677888 9999999999999999999
Q ss_pred ecCCCCceEEecccccccCccccCccCcceEEEEEEeecCccccccccCCCchhhhhhhcCCCccEEEEEEeecCCCCee
Q 004576 529 AAADPSTFLIRGENYLKDHRKIKADGTLMQMIGADWLRSNKREDNLAARPCSLVQKYAAGGGPEFFFVVNIQFPGTTKYT 608 (744)
Q Consensus 529 s~~~~~~F~VRg~~Y~~dk~K~pa~~~l~~lv~vD~f~s~~~~~~ia~~~~~~~~~~~~~~~~p~~~ivN~qvP~~p~~s 608 (744)
++|++++|+|||+|||+||+|+||+++||+|+|||||++++|+||||+||++++|.+.++ .||+|||||||||+|+||
T Consensus 502 s~Pd~~~F~VRG~~Yl~Dk~KvPAg~~l~~lvgvDwfks~~ridhVa~r~~~~vq~a~~k--~~F~fiVNlQvPg~~~ys 579 (719)
T PLN00188 502 RISDGNNFKVRSKNFCYDKSKIPAGKHLMDLVAVDWFKDTKRMDHVARRKGCAAQVAAEK--GLFSFVVNLQVPGSTHYS 579 (719)
T ss_pred cCCCCcceEEcCCCcccCCccccCCccceeeEEEEEEcCCchhhHhhcCCCchhhhhccc--CCcEEEEEEEccCCCceE
Confidence 999999999999999999999999999999999999999999999999999999987655 489999999999999999
Q ss_pred EEEEEeecCCCCCchhhhhhhcCCccccccccccccccccCceeeeeecCCceeeeeeeeEEEEEeCCCeEEEEEEeCCh
Q 004576 609 LALYYVIKTPLEDNPLLHKFVNGDDAFRNSRFKLIPYISKGSWIVKQSVGKTACLLGRALEVNYYRGRNYLEIQIDVGSS 688 (744)
Q Consensus 609 ~V~Yf~~~~~~~~~~Ll~rf~~gdd~fRn~RfKlIp~v~~g~wiv~~avg~kp~l~g~~~~~~y~~g~~ylEiDvDi~ss 688 (744)
+|+||++++ +.+++||+||++|||+|||+||||||+|++|||||||+||+|||||||+|+|+||+|+||||||||||||
T Consensus 580 ~V~Yf~~~~-l~~~sLl~rF~~GDD~fRnsRfKLIP~Iv~GpWiVk~aVG~~p~llGk~l~~~Y~~g~nylEvdvDi~ss 658 (719)
T PLN00188 580 MVFYFVTKE-LVPGSLLQRFVDGDDEFRNSRLKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPKYLEIDVDIGSS 658 (719)
T ss_pred EEEEEeccC-CCCchHHHHhccCchhHhhCceEEeccccCCceEEEeccCCcceEeeeecceeEecCCCeEEEEEeeccH
Confidence 999999865 7788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccceEEEEEEEEeeCCCccccccceeceEEecccCCCCCccC
Q 004576 689 TVATGVASLVLGYLNNLVIEMAFLIQGETEEELPEFLLGTCRLNHLDVSKSVVV 742 (744)
Q Consensus 689 ~vAr~~~~l~~g~~~~lvvd~~f~ieg~~~~ELPE~lLg~~Rl~~~d~~~A~~~ 742 (744)
+||++|++||+||+++|||||||+|||+++|||||+|||||||++||+++|+.+
T Consensus 659 ~va~~v~~l~~g~~~~lvvD~af~ie~~~~eELPE~llG~~Rl~~i~~~~A~~~ 712 (719)
T PLN00188 659 TVANGVLGLVIGVITTLVVDMAFLVQANTYEELPERLIGAVRVSHVELSSAIVP 712 (719)
T ss_pred HHHHHHHHHHHhhhhheEEEEEEEEecCChhhCchhheeeEEecccchhhcccc
Confidence 999999999999999999999999999999999999999999999999999876
No 2
>PF07059 DUF1336: Protein of unknown function (DUF1336); InterPro: IPR009769 This entry represents the C terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function.
Probab=100.00 E-value=9.3e-74 Score=587.34 Aligned_cols=207 Identities=52% Similarity=0.937 Sum_probs=201.7
Q ss_pred eecCCCCceEEecccccccCccccCccCcceEEEEEEeecCccccccccCCCchhhhhhhcCCCccEEEEEEeecC----
Q 004576 528 WAAADPSTFLIRGENYLKDHRKIKADGTLMQMIGADWLRSNKREDNLAARPCSLVQKYAAGGGPEFFFVVNIQFPG---- 603 (744)
Q Consensus 528 Ws~~~~~~F~VRg~~Y~~dk~K~pa~~~l~~lv~vD~f~s~~~~~~ia~~~~~~~~~~~~~~~~p~~~ivN~qvP~---- 603 (744)
||+|++++|+|||+|||+||+|+||+++||+|+|||||++++|++|||+|++++++....+ +.||+||||||||+
T Consensus 1 Ws~p~~~~FkVRG~~Yl~DkkKvpa~~~l~~lvgvDlf~s~~~~~hia~~~~~~~~~~~~~-~~P~~fIVNlqvP~~p~~ 79 (227)
T PF07059_consen 1 WSEPDASTFKVRGPNYLKDKKKVPAGPPLFELVGVDLFKSDKKIDHIARRPSSPVQKALEK-GVPFTFIVNLQVPGYPPS 79 (227)
T ss_pred CCCCCCCEEEEeCCCcccCCCCCcCCCcceeeEEEEEEecCCcchhhhhCcCCcccccccc-CCCcEEEEEEEccCCccc
Confidence 9999999999999999999999999999999999999999999999999999998877665 57999999999999
Q ss_pred ------CCCeeEEEEEeecCCCCC------chhhhhhhcCC---ccccccccccccccccCceeeeeec-CCceeeeeee
Q 004576 604 ------TTKYTLALYYVIKTPLED------NPLLHKFVNGD---DAFRNSRFKLIPYISKGSWIVKQSV-GKTACLLGRA 667 (744)
Q Consensus 604 ------~p~~s~V~Yf~~~~~~~~------~~Ll~rf~~gd---d~fRn~RfKlIp~v~~g~wiv~~av-g~kp~l~g~~ 667 (744)
+|+||+|+||++++++.+ .+||+||++|| |+|||+||||||+|+|||||||++| |+||||||++
T Consensus 80 ~f~~~~~~~~s~V~Yf~~~~~~~~~~~~~~~~ll~rF~~gd~~~d~frn~RfKlIp~vv~gpwivr~~v~~~kP~lig~~ 159 (227)
T PF07059_consen 80 MFGEIDGPGYSLVLYFRMPEPIEDDDSPPFGRLLHRFLNGDEVEDAFRNERFKLIPRVVNGPWIVRKAVYNGKPVLIGKK 159 (227)
T ss_pred cccccccCCceEEEEEecCCccccccCchhHHHHHHHHhcCccchhhhhccEEEEEEEcCCchhhhhhhcCCCceeecCc
Confidence 999999999999998876 68999999999 9999999999999999999999999 9999999999
Q ss_pred eEEEEEeCCCeEEEEEEeCChHHHHHHHHHhhcccceEEEEEEEEeeCCCccccccceeceEEecccC
Q 004576 668 LEVNYYRGRNYLEIQIDVGSSTVATGVASLVLGYLNNLVIEMAFLIQGETEEELPEFLLGTCRLNHLD 735 (744)
Q Consensus 668 ~~~~y~~g~~ylEiDvDi~ss~vAr~~~~l~~g~~~~lvvd~~f~ieg~~~~ELPE~lLg~~Rl~~~d 735 (744)
++|+||+|+||||||||||||++||+++++|+||+++|||||||+|||+++|||||+||||+||+|||
T Consensus 160 ~~~~y~~g~~y~E~dvdi~ss~~a~~~~~~~~~~~~~lvvd~gf~ieg~~~~ELPE~lLg~~Rl~~id 227 (227)
T PF07059_consen 160 LQHRYFRGPNYLEIDVDIHSSYIARKVLHLVRGYLKKLVVDMGFVIEGQTEEELPERLLGCVRLNHID 227 (227)
T ss_pred cceEEeeCCCeEEEEEEeccHHHHHHHHHHHHhhhceEEEEEEEEecCCChhhCchheEeEEEeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998
No 3
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=100.00 E-value=4.6e-37 Score=316.10 Aligned_cols=197 Identities=18% Similarity=0.303 Sum_probs=179.0
Q ss_pred cCCcc-eeeeccC-CCCCccccCCCCcccc----ccccccccccCCCCEEEEeeCCeEEEEEeecCCCCCccCCCCceEE
Q 004576 132 RWPSL-RLYVSKR-SDYKYSGDWTLGSSIR----SEATASDVIAPSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIM 205 (744)
Q Consensus 132 ~~~~~-r~~~~~~-~~~~~s~~w~~~~~~~----n~~~~~dv~a~s~W~l~~~~nGVrVy~~~~e~~~~~~~~s~~~~~K 205 (744)
+++|+ |+|++++ ...++|++|+++||++ |+.++...++.++|++..+++||+||+++ + ++.+.||
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~W~l~~dkdgIkVytr~-~--------s~~l~fk 81 (236)
T cd08914 11 KRIRLGRKYVISHKEEVPLCIHWDIGNQASLSDSNVEALKKLAAKSGWEVTSTVEKIKIYTLE-E--------HDVLSVW 81 (236)
T ss_pred hhhhccceeeeeccccCceecccCCCceEEEeeCCHHHhhhhcccCCCEEEEccCCEEEEEec-C--------CCcEEEE
Confidence 78999 8999887 7899999999999977 89999999999999999999999999995 3 3568999
Q ss_pred EEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEecCCcEEEEEEEeecCCCCC-CCCCceEEEEEEEEEcC-CCe-
Q 004576 206 AVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPW-GMQRRDLLVRRYWRRED-DGT- 282 (744)
Q Consensus 206 a~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~tdIvY~~~~~~~lp~-~vs~RDFV~lR~wrr~~-dGs- 282 (744)
+++++++|+++++++|.|++ .|++||.++.++++|+++|+++. +|+...+ || |+++||||++++|++.. +|.
T Consensus 82 ~e~~vdvs~~~l~~LL~D~~-~r~~Wd~~~~e~~vI~qld~~~~-vY~~~~p---Pw~Pvk~RD~V~~~s~~~~~~dg~~ 156 (236)
T cd08914 82 VEKHVKRPAHLAYRLLSDFT-KRPLWDPHFLSCEVIDWVSEDDQ-IYHITCP---IVNNDKPKDLVVLVSRRKPLKDGNT 156 (236)
T ss_pred EEEEEcCCHHHHHHHHhChh-hhchhHHhhceEEEEEEeCCCcC-EEEEecC---CCCCCCCceEEEEEEEEecCCCCCE
Confidence 99999999999999999999 59999999999999999999998 5656554 56 89999999999998775 775
Q ss_pred EEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceEEEEEEEEeCCcccccccccch
Q 004576 283 YVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYLRPSSA 344 (744)
Q Consensus 283 yvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~VTyi~qvDpkGwiP~~~~~~~ 344 (744)
|+|..+||.||.+||.+||||+.....||+|+|++++ +|+|||++|+|| ||+|.|..+++
T Consensus 157 ~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~~I~pl~~~-~~~VtY~~~~dP-g~lp~~~~n~~ 216 (236)
T cd08914 157 YVVAVKSVILPSVPPSPQYIRSEIICAGFLIHAIDSN-SCTVSYFNQISA-SILPYFAGNLG 216 (236)
T ss_pred EEEEEeecccccCCCCCCcEEeEEEEEEEEEEEcCCC-cEEEEEEEEcCC-ccchheEEecc
Confidence 9999999999999999999999999999999999765 799999999999 99999966543
No 4
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=100.00 E-value=4.3e-36 Score=311.21 Aligned_cols=214 Identities=19% Similarity=0.266 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcccccccccCCcc-eeeeccC--CCCCccccCCCCcccc----ccccccccccCCCCE
Q 004576 102 EAAKWIRSLQEAAVKECPCPTYNFVAVSKRRWPSL-RLYVSKR--SDYKYSGDWTLGSSIR----SEATASDVIAPSPWK 174 (744)
Q Consensus 102 ea~~w~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~--~~~~~s~~w~~~~~~~----n~~~~~dv~a~s~W~ 174 (744)
+.||+.+ |+++ +++|+ |+|++++ ..+++|++|+++||++ |+.|++.+.+.++|+
T Consensus 2 ~~~~~~~----~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~W~ 62 (240)
T cd08913 2 GERRYRE----ASAR---------------KKIRLDRKYIVSCKQTEVPLSVPWDPSNQVYLSYNNVSALKMLVAKDNWV 62 (240)
T ss_pred chHHHHH----HHhh---------------hhhhccceeeEecccccCceecccCccceeEEeecCHHHHHhhcccCCCE
Confidence 4567766 8887 78999 8999987 4799999999999976 899999999999999
Q ss_pred EEEeeCCeEEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEecCCcEEEEEEE
Q 004576 175 IFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKL 254 (744)
Q Consensus 175 l~~~~nGVrVy~~~~e~~~~~~~~s~~~~~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~tdIvY~~ 254 (744)
+.++++||+||++.. +..+.||++++|++|+++|+++|.|++ .|++||.++.++++|+++|+++. +|++
T Consensus 63 l~~~~~gI~Vyt~~~---------s~~~~fK~e~~vd~s~e~v~~lL~D~~-~r~~Wd~~~~e~~vIe~id~~~~-vY~v 131 (240)
T cd08913 63 LSSEKNQVRLYTLEE---------DKFLSFKVEMVVHVDAAQAFLLLSDLR-RRPEWDKHYRSCELVQQVDEDDA-IYHV 131 (240)
T ss_pred EEEccCCEEEEEEeC---------CCccEEEEEEEEcCCHHHHHHHHhChh-hhhhhHhhccEEEEEEecCCCcE-EEEE
Confidence 999999999999652 245799999999999999999999998 59999999999999999999865 6777
Q ss_pred eecCCCCCCCCCceEEEEEEEEEc-CCC-eEEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceEEEEEEEEeC
Q 004576 255 LYSDWLPWGMQRRDLLVRRYWRRE-DDG-TYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDW 332 (744)
Q Consensus 255 ~~~~~lp~~vs~RDFV~lR~wrr~-~dG-syvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~VTyi~qvDp 332 (744)
..+.| +||+++||||++++|++. ++| .|+|+.+|+.||++||++|||||...+|||+|.|++++ .|+|||+.++||
T Consensus 132 ~~~p~-~~pvs~RDfV~~~s~~~~~~~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~-~t~vtY~~~~dP 209 (240)
T cd08913 132 TSPSL-SGHGKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQ-LTKVSYYNQATP 209 (240)
T ss_pred ecCCC-CCCCCCCeEEEEEEEEeccCCCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCC-cEEEEEEEEeCC
Confidence 66654 469999999999999775 344 69999999999999999999999999999999998765 799999999999
Q ss_pred Ccccccccc-cchhhHH
Q 004576 333 KYWKLYLRP-SSARSIT 348 (744)
Q Consensus 333 kGwiP~~~~-~~~~~~~ 348 (744)
| ++|.|.. .+....|
T Consensus 210 G-~LP~~~~N~~~~~~p 225 (240)
T cd08913 210 G-VLPYISTDIAGLSSE 225 (240)
T ss_pred c-cccHHHhhhhhhccc
Confidence 6 9999944 4444444
No 5
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=100.00 E-value=5.3e-36 Score=308.84 Aligned_cols=189 Identities=19% Similarity=0.244 Sum_probs=172.1
Q ss_pred cCCcc-eeeeccCC-CCCccccCCCCcccc----ccccccccccCCCCEEEEeeCCeEEEEEeecCCCCCccCCCCceEE
Q 004576 132 RWPSL-RLYVSKRS-DYKYSGDWTLGSSIR----SEATASDVIAPSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIM 205 (744)
Q Consensus 132 ~~~~~-r~~~~~~~-~~~~s~~w~~~~~~~----n~~~~~dv~a~s~W~l~~~~nGVrVy~~~~e~~~~~~~~s~~~~~K 205 (744)
++||+ |+|.+++. .+++|++|+++||++ |+.|++.+.+.++|++.++++||+||+++ + ++.+.||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~W~l~~~k~gIkVytr~-~--------s~~l~fk 80 (235)
T cd08873 10 KKIRLDRKYILSLQREVPLSVAWDRSNQMYLSYGNVTALKRLAAKSDWTVASSTTSVTLYTLE-Q--------DGVLSFC 80 (235)
T ss_pred hhhhcccceeeecCccCceEcccCccccEEEeeCCHHHHhhccccCCCEEEEcCCCEEEEEec-C--------CCceEEE
Confidence 88999 88998874 899999999999977 89999999999999999999999999997 2 2457899
Q ss_pred EEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEecCCcEEEEEEEeecCCCCCCCCCceEEEEEEEEEc-CC-CeE
Q 004576 206 AVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRRE-DD-GTY 283 (744)
Q Consensus 206 a~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~-~d-Gsy 283 (744)
+++++++++++++++|.|.+ .|++||.++.++++|+++|++..|+|+++. .|||+++||||++++|++. ++ +.|
T Consensus 81 ~e~~vd~s~~~v~dlL~D~~-~R~~WD~~~~e~evI~~id~d~~iyy~~~p---~PwPvk~RDfV~~~s~~~~~~~~~~~ 156 (235)
T cd08873 81 VELKVQTCASDAFDLLSDPF-KRPEWDPHGRSCEEVKRVGEDDGIYHTTMP---SLTSEKPNDFVLLVSRRKPATDGDPY 156 (235)
T ss_pred EEEEecCCHHHHHHHHhCcc-hhhhhhhcccEEEEEEEeCCCcEEEEEEcC---CCCCCCCceEEEEEEEEeccCCCCeE
Confidence 99999999999999999998 699999999999999999999888887754 3679999999999999984 33 469
Q ss_pred EEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceEEEEEEEEeCCc
Q 004576 284 VILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKY 334 (744)
Q Consensus 284 vI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~VTyi~qvDpkG 334 (744)
+|..+||.|+.+||++||||+....|||+|+|++++ +|+|||++|+|||-
T Consensus 157 ~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~-~t~VtY~~~~dPg~ 206 (235)
T cd08873 157 KVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGT-CTEVSYYNETNPKL 206 (235)
T ss_pred EEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCC-cEEEEEEEEcCCCc
Confidence 999999999999999999999999999999999765 79999999999874
No 6
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=100.00 E-value=2.5e-34 Score=291.81 Aligned_cols=183 Identities=13% Similarity=0.191 Sum_probs=163.1
Q ss_pred cCCCCEEEEeeCCeEEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEecCCcE
Q 004576 169 APSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHS 248 (744)
Q Consensus 169 a~s~W~l~~~~nGVrVy~~~~e~~~~~~~~s~~~~~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~t 248 (744)
..++|++.+..+|+.||++.... ..++++|++|+|+++|++|++++.+.. .|.+||.++.++++||+||++|
T Consensus 20 ~~~gWk~~k~~~~~~v~~k~~~~-------~~gkl~k~egvi~~~~e~v~~~l~~~e-~r~~Wd~~~~~~~iie~Id~~T 91 (204)
T cd08904 20 DTSGWKVVKTSKKITVSWKPSRK-------YHGNLYRVEGIIPESPAKLIQFMYQPE-HRIKWDKSLQVYKMLQRIDSDT 91 (204)
T ss_pred cccCCeEEecCCceEEEEEEcCC-------CCceEEEEEEEecCCHHHHHHHHhccc-hhhhhcccccceeeEEEeCCCc
Confidence 35899999999999999996422 346999999999999999999999866 6999999999999999999999
Q ss_pred EEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCC-CCceEEEEE
Q 004576 249 DVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQ-GKQSIVKHM 327 (744)
Q Consensus 249 dIvY~~~~~~~lp~~vs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~-~~~c~VTyi 327 (744)
+|+|.++++.. .+.++|||||.+|+|++.+++.|+++++|++||+|||++|||||+++++||+|+|+++ +++|++||+
T Consensus 92 ~I~~~~~~~~~-~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~ 170 (204)
T cd08904 92 FICHTITQSFA-MGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMF 170 (204)
T ss_pred EEEEEeccccc-CCcccCceEEEEEEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEE
Confidence 99999987632 2349999999999999877789999999999999999999999999999999999954 457999999
Q ss_pred EEEeCCcccccccccchhhHHHHHHHHHHHHHHHH
Q 004576 328 LAVDWKYWKLYLRPSSARSITIRMLERVAALRELF 362 (744)
Q Consensus 328 ~qvDpkGwiP~~~~~~~~~~~~~mL~~va~LRe~~ 362 (744)
+++|||||+|+| ...+.++..|++.+..|++-+
T Consensus 171 ~~~DlkG~lP~~--vv~~~~~~~~~~f~~~~~~~~ 203 (204)
T cd08904 171 VQPELRGNLSRS--VIEKTMPTNLVNLILDAKDGI 203 (204)
T ss_pred EEeCCCCCCCHH--HHHHHhHHHHHHHHHHHHHhc
Confidence 999999999998 666788888999998888643
No 7
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=100.00 E-value=8.9e-33 Score=280.87 Aligned_cols=184 Identities=18% Similarity=0.299 Sum_probs=160.3
Q ss_pred ccCCCCEEEEeeC-CeEEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHHHHHH-cCCCCccccccccceeEEEEecC
Q 004576 168 IAPSPWKIFGCQN-GLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTLM-SLGSSRSEWDFCFYRGCVVEHLD 245 (744)
Q Consensus 168 ~a~s~W~l~~~~n-GVrVy~~~~e~~~~~~~~s~~~~~Ka~~vV~aspe~Vf~~L~-d~~~~R~eWD~~~~e~~vVE~ID 245 (744)
....+|++...++ |++||++..++ .++.+|+++++++++++||+.|+ |.+ .|++||+++.++++|+++|
T Consensus 21 ~~~~~W~l~~~~~~~i~i~~r~~~~--------~~~~~k~~~~i~~~~~~v~~~l~~d~~-~~~~Wd~~~~~~~~i~~~d 91 (208)
T cd08868 21 LTDPGWKLEKNTTWGDVVYSRNVPG--------VGKVFRLTGVLDCPAEFLYNELVLNVE-SLPSWNPTVLECKIIQVID 91 (208)
T ss_pred hcCCCceEEEecCCCCEEEEEEcCC--------CceEEEEEEEEcCCHHHHHHHHHcCcc-ccceecCcccceEEEEEec
Confidence 3455999999997 99999997652 24789999999999999997655 666 6999999999999999999
Q ss_pred CcEEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCC-CCceEE
Q 004576 246 GHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQ-GKQSIV 324 (744)
Q Consensus 246 ~~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~-~~~c~V 324 (744)
++++|+|+++++. +||++++||||++|+|++.+ +.|+|+.+|++||++|+++|+|||....+||+|+|+++ +.+|.|
T Consensus 92 ~~~~i~y~~~~~~-~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v 169 (208)
T cd08868 92 DNTDISYQVAAEA-GGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNF 169 (208)
T ss_pred CCcEEEEEEecCc-CCCcccccceEEEEEEEecC-CeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEE
Confidence 9999999888765 46899999999999999865 67999999999999999999999999999999999954 358999
Q ss_pred EEEEEEeCCcccccccccchhhHHHHHHHHHHHHHHHHHh
Q 004576 325 KHMLAVDWKYWKLYLRPSSARSITIRMLERVAALRELFQA 364 (744)
Q Consensus 325 Tyi~qvDpkGwiP~~~~~~~~~~~~~mL~~va~LRe~~~~ 364 (744)
||++++|||||+|.|+ +...+...+++.+++||+++.+
T Consensus 170 ~~~~~~Dp~G~iP~~l--vN~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08868 170 TWLLNTDLKGWLPQYL--VDQALASVLLDFMKHLRKRIAT 207 (208)
T ss_pred EEEEEECCCCCCccee--eehhhHHHHHHHHHHHHHHHhh
Confidence 9999999999999994 3334445567888999999864
No 8
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=100.00 E-value=2e-32 Score=276.79 Aligned_cols=177 Identities=24% Similarity=0.335 Sum_probs=155.0
Q ss_pred CCCCEEEEeeCCeEEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEecCCcEE
Q 004576 170 PSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSD 249 (744)
Q Consensus 170 ~s~W~l~~~~nGVrVy~~~~e~~~~~~~~s~~~~~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~td 249 (744)
..+|++..+++||+||.+..+.. +..+.||++++|+++|++|++.|++ .|.+||.++.++++|+++|++++
T Consensus 18 ~~~W~~~~~~~gi~I~~k~~~~~------~~l~~~K~~~~v~a~~~~v~~~l~d---~r~~Wd~~~~~~~vie~id~~~~ 88 (197)
T cd08869 18 SKGWVSVSSSDHVELAFKKVDDG------HPLRLWRASTEVEAPPEEVLQRILR---ERHLWDDDLLQWKVVETLDEDTE 88 (197)
T ss_pred cCCceEEecCCcEEEEEEeCCCC------CcEEEEEEEEEeCCCHHHHHHHHHH---HHhccchhhheEEEEEEecCCcE
Confidence 67999999999999999976421 2568999999999999999999986 58999999999999999999999
Q ss_pred EEEEEeecCCCCCCCCCceEEEEEEEEEc-CCCeEEEEEeccCCC-CCCCCCCeEEEEEeceeEEEEeCCCCCceEEEEE
Q 004576 250 VVHKLLYSDWLPWGMQRRDLLVRRYWRRE-DDGTYVILYHSVNHK-KCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHM 327 (744)
Q Consensus 250 IvY~~~~~~~lp~~vs~RDFV~lR~wrr~-~dGsyvI~~~SV~Hp-~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~VTyi 327 (744)
|+|+++.+ |||+++||||++|+|++. ++|+|+|+++||.|| .+|+ |||||....|||+|+|++++ +|+|||+
T Consensus 89 i~y~~~~~---p~pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~--g~VR~~~~~~g~~i~p~~~~-~t~vty~ 162 (197)
T cd08869 89 VYQYVTNS---MAPHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVPL--GGVRAVVLASRYLIEPCGSG-KSRVTHI 162 (197)
T ss_pred EEEEEeeC---CCCCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCCC--CCEEEEEEeeeEEEEECCCC-CeEEEEE
Confidence 99988765 578999999999999875 778999999999995 6676 99999999999999999754 7999999
Q ss_pred EEEeCCcccccccccchhhHHHHHHHHHHHHHHHHHh
Q 004576 328 LAVDWKYWKLYLRPSSARSITIRMLERVAALRELFQA 364 (744)
Q Consensus 328 ~qvDpkGwiP~~~~~~~~~~~~~mL~~va~LRe~~~~ 364 (744)
+++|||||+|.|+++...++.. ..|.+||+.|.+
T Consensus 163 ~~~Dp~G~iP~wl~N~~~~~~~---~~~~~l~~~~~~ 196 (197)
T cd08869 163 CRVDLRGRSPEWYNKVYGHLCA---RELLRIRDSFRQ 196 (197)
T ss_pred EEECCCCCCCceeecchHhHHH---HHHHHHHhhccC
Confidence 9999999999997765554443 446899998864
No 9
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=100.00 E-value=2.4e-32 Score=278.66 Aligned_cols=187 Identities=19% Similarity=0.220 Sum_probs=160.3
Q ss_pred cccccCCCCEEEEee-CCeEEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHH-HHHHcCCCCccccccccceeEEEE
Q 004576 165 SDVIAPSPWKIFGCQ-NGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIF-QTLMSLGSSRSEWDFCFYRGCVVE 242 (744)
Q Consensus 165 ~dv~a~s~W~l~~~~-nGVrVy~~~~e~~~~~~~~s~~~~~Ka~~vV~aspe~Vf-~~L~d~~~~R~eWD~~~~e~~vVE 242 (744)
.-+.+.++|++.+.. ||++||++..+. .++.||++++|++|++.+| ++|.|++ .|++||+++.++++|+
T Consensus 19 ~~l~~~~~W~l~~~~~~gi~V~s~~~~~--------~~~~fk~~~~v~~~~~~l~~~ll~D~~-~~~~W~~~~~~~~vi~ 89 (209)
T cd08906 19 QILAQEENWKFEKNNDNGDTVYTLEVPF--------HGKTFILKAFMQCPAELVYQEVILQPE-KMVLWNKTVSACQVLQ 89 (209)
T ss_pred HHhhcccCCEEEEecCCCCEEEEeccCC--------CCcEEEEEEEEcCCHHHHHHHHHhChh-hccccCccchhhhhee
Confidence 445567899999875 999999986552 2389999999999999998 6889988 5999999999999999
Q ss_pred ecCCcEEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeC-CCCCc
Q 004576 243 HLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPS-NQGKQ 321 (744)
Q Consensus 243 ~ID~~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl-~~~~~ 321 (744)
++|++++|+|.+ ...|.+|++++||||++|+|.+.+++ |+++..|+.|+.+||++|||||++.++||.|.|. .++.+
T Consensus 90 ~~~~~~~i~Y~v-~~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~ 167 (209)
T cd08906 90 RVDDNTLVSYDV-AAGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSV 167 (209)
T ss_pred eccCCcEEEEEE-ccccccCCCCCCceEEEEEEEecCCc-EEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCc
Confidence 999999999944 44456679999999999999987765 8999999999999999999999999999999997 44558
Q ss_pred eEEEEEEEEeCCcccccccccchhhHHHHHHHHHHHHHHHHHh
Q 004576 322 SIVKHMLAVDWKYWKLYLRPSSARSITIRMLERVAALRELFQA 364 (744)
Q Consensus 322 c~VTyi~qvDpkGwiP~~~~~~~~~~~~~mL~~va~LRe~~~~ 364 (744)
|+|||++++|||||+|.|+. ...++-.+++++.+||++++.
T Consensus 168 t~vt~~~~~Dp~G~lP~~lv--N~~~~~~~~~~~~~LR~~~~~ 208 (209)
T cd08906 168 CTFIWILNTDLKGRLPRYLI--HQSLAATMFEFASHLRQRIRD 208 (209)
T ss_pred eEEEEEEecCCCCCCCHHHH--HHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999933 334444567888999999863
No 10
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=100.00 E-value=2.7e-32 Score=276.51 Aligned_cols=175 Identities=25% Similarity=0.350 Sum_probs=150.4
Q ss_pred CCCEEEEeeCCeEEE-EEeecCCCCCccCCCCceEEEEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEecCCcEE
Q 004576 171 SPWKIFGCQNGLRLF-KEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSD 249 (744)
Q Consensus 171 s~W~l~~~~nGVrVy-~~~~e~~~~~~~~s~~~~~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~td 249 (744)
.+|..+...|++.++ ++..++ +..+++|++++|+++|++|++.+++ +|++||.++.++++||++|+|++
T Consensus 27 k~w~~~~~~~~~e~~ykK~~d~-------~~lk~~r~~~ei~~~p~~VL~~vl~---~R~~WD~~~~~~~~ie~ld~~td 96 (205)
T cd08909 27 KGWISCSSSDNTELAYKKVGDG-------NPLRLWKVSVEVEAPPSVVLNRVLR---ERHLWDEDFLQWKVVETLDKQTE 96 (205)
T ss_pred cCCcccCCcCCeEEEEecCCCC-------CceEEEEEEEEeCCCHHHHHHHHHh---hHhhHHhhcceeEEEEEeCCCcE
Confidence 466666666777774 333332 3568999999999999999999976 59999999999999999999999
Q ss_pred EEEEEeecCCCCCCCCCceEEEEEEEEEc-CCCeEEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceEEEEEE
Q 004576 250 VVHKLLYSDWLPWGMQRRDLLVRRYWRRE-DDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHML 328 (744)
Q Consensus 250 IvY~~~~~~~lp~~vs~RDFV~lR~wrr~-~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~VTyi~ 328 (744)
|+|+.++. |+|+++||||++|+|+++ ++|+|+|+++||+|+++|+. |+|||....+||+|+|++++ +|+|||++
T Consensus 97 i~~y~~~~---~~P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~~-g~VRa~~~~~gylI~P~~~g-~trvt~i~ 171 (205)
T cd08909 97 VYQYVLNC---MAPHPSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPLL-GGVRAVVLDSQYLIEPCGSG-KSRLTHIC 171 (205)
T ss_pred EEEEEeec---CCCCCCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCCC-CcEEEEEEcCcEEEEECCCC-CEEEEEEE
Confidence 99999875 358999999999999988 68999999999999999995 99999999999999999776 79999999
Q ss_pred EEeCCcccccccccchhhHHHHHHHHHHHHHHHHH
Q 004576 329 AVDWKYWKLYLRPSSARSITIRMLERVAALRELFQ 363 (744)
Q Consensus 329 qvDpkGwiP~~~~~~~~~~~~~mL~~va~LRe~~~ 363 (744)
++|||||+|.|+++.-.++.. ..+++||+.|.
T Consensus 172 ~vDpkG~~P~W~~n~~g~~~~---~~~~~~r~sf~ 203 (205)
T cd08909 172 RVDLKGHSPEWYNKGFGHLCA---AEAARIRNSFQ 203 (205)
T ss_pred EecCCCCChHHHHHhHHHHHH---HHHHHHHhhcc
Confidence 999999999998865544443 45689999885
No 11
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=100.00 E-value=9.1e-32 Score=273.44 Aligned_cols=189 Identities=13% Similarity=0.111 Sum_probs=164.6
Q ss_pred cccccccccccCCCCEEEEeeCCeEEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHHHHHHcCCCCcccccccccee
Q 004576 159 RSEATASDVIAPSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRG 238 (744)
Q Consensus 159 ~n~~~~~dv~a~s~W~l~~~~nGVrVy~~~~e~~~~~~~~s~~~~~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~ 238 (744)
.|+.++....+.++|++.++++||+||+++.++ ....||++++|++|+++|+++|.|+. .|++||..+.++
T Consensus 10 ~n~~~l~~~~~~~gW~l~~~~~gI~Vy~k~~~~--------~~~~~~ge~~v~as~~~v~~ll~D~~-~r~~Wd~~~~~~ 80 (205)
T cd08874 10 VNLSNLDQCQATAGWSYQCLEKDVVIYYKVFNG--------TYHGFLGAGVIKAPLATVWKAVKDPR-TRFLYDTMIKTA 80 (205)
T ss_pred hhHHHHHhhhccCCcEEEecCCCEEEEEecCCC--------CcceEEEEEEEcCCHHHHHHHHhCcc-hhhhhHHhhhhe
Confidence 388899999999999999999999999997552 35789999999999999999999998 599999999999
Q ss_pred EEEEecCCcEEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEEEEEeccCCCCCCCCC-CeEEEEEeceeEEEEeC-
Q 004576 239 CVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYVILYHSVNHKKCPKQK-GYVRACLKSGGFVITPS- 316 (744)
Q Consensus 239 ~vVE~ID~~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~~Pp~~-G~VRa~i~~sGwvI~Pl- 316 (744)
++|+++|+++.|+|+++...| |.++++||||+++.|+..++ .++|..+||.||.+|+.+ |||||.+++|||+|+|+
T Consensus 81 ~vl~~~~~d~~i~y~~~~~Pw-p~~~~~RDfV~l~~~~~~~~-~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~ 158 (205)
T cd08874 81 RIHKTFTEDICLVYLVHETPL-CLLKQPRDFCCLQVEAKEGE-LSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVT 158 (205)
T ss_pred eeeeecCCCeEEEEEEecCCC-CCCCCCCeEEEEEEEEECCC-cEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECc
Confidence 999999999999999876443 34459999999999977554 566999999999999996 99999999999999998
Q ss_pred --CCCCceEEEEEEEEeCC-cccccccc-cchhhHHHHHHHHHHHHHHHHH
Q 004576 317 --NQGKQSIVKHMLAVDWK-YWKLYLRP-SSARSITIRMLERVAALRELFQ 363 (744)
Q Consensus 317 --~~~~~c~VTyi~qvDpk-GwiP~~~~-~~~~~~~~~mL~~va~LRe~~~ 363 (744)
+++ +|+|||++|+||| |-+|.|+. .+....| ..|+.|+.|+.
T Consensus 159 ~~g~~-~t~vty~~q~DPggg~iP~~l~N~~~~~~p----~~~~~~~~~~~ 204 (205)
T cd08874 159 VEGNQ-YTRVIYIAQVALCGPDVPAQLLSSLSKRQP----LVIARLALFLE 204 (205)
T ss_pred cCCCC-cEEEEEEEEECCCCCCCCHHHHhHHHHhcc----HHHHHHHHHhh
Confidence 444 7999999999999 79999944 4444544 56889998875
No 12
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=99.98 E-value=3.6e-31 Score=269.79 Aligned_cols=184 Identities=20% Similarity=0.192 Sum_probs=156.9
Q ss_pred cCCCCEEEEeeCCeEEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHHHHHHcCCC-CccccccccceeEEEEecCCc
Q 004576 169 APSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTLMSLGS-SRSEWDFCFYRGCVVEHLDGH 247 (744)
Q Consensus 169 a~s~W~l~~~~nGVrVy~~~~e~~~~~~~~s~~~~~Ka~~vV~aspe~Vf~~L~d~~~-~R~eWD~~~~e~~vVE~ID~~ 247 (744)
..++|++.+.+||++||++.... ..+..||++++|++++++|+++|+|... .|.+||.++.++++||++|++
T Consensus 20 ~~~~W~~~~~~~~i~v~~~~~~~-------~~~~~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~ 92 (208)
T cd08903 20 DESGWKTCRRTNEVAVSWRPSAE-------FAGNLYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDD 92 (208)
T ss_pred cccCCEEEEcCCCEEEEeeecCC-------CCCcEEEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCC
Confidence 46799999999999999995321 1346799999999999999999998643 579999999999999999999
Q ss_pred EEEEEEEeecCCC-CCCCCCceEEEEEEEEEcCCCeEEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCC-CCCceEEE
Q 004576 248 SDVVHKLLYSDWL-PWGMQRRDLLVRRYWRREDDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSN-QGKQSIVK 325 (744)
Q Consensus 248 tdIvY~~~~~~~l-p~~vs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~-~~~~c~VT 325 (744)
+.|+|..+ .|. .+.+++||||++|+|++.+||+|++...|+.||.|||++|||||+..++||++.|++ ++++|.||
T Consensus 93 ~~i~~~~~--p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~ 170 (208)
T cd08903 93 VSVCRTVT--PSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLV 170 (208)
T ss_pred EEEEEEec--chhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEE
Confidence 99988742 221 124999999999999999999999999999999999999999999999999999994 34579999
Q ss_pred EEEEEeCCcccccccccchhhHHHHHHHHHHHHHHHHH
Q 004576 326 HMLAVDWKYWKLYLRPSSARSITIRMLERVAALRELFQ 363 (744)
Q Consensus 326 yi~qvDpkGwiP~~~~~~~~~~~~~mL~~va~LRe~~~ 363 (744)
|++++|||||+|.|+. ...++-.+..++.+||..+.
T Consensus 171 ~~~~~DpkG~iP~~lv--n~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08903 171 SFFQTDLSGYLPQTVV--DSFFPASMAEFYNNLTKAVK 206 (208)
T ss_pred EEEEeccCCCcCHHHH--HHHhhHHHHHHHHHHHHHHh
Confidence 9999999999999833 34444556788899999875
No 13
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=99.97 E-value=6.9e-31 Score=266.65 Aligned_cols=182 Identities=17% Similarity=0.193 Sum_probs=156.3
Q ss_pred CCCCEEEEeeCCeEEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHHHHHHc--CCCCccccccccceeEEEEecCCc
Q 004576 170 PSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTLMS--LGSSRSEWDFCFYRGCVVEHLDGH 247 (744)
Q Consensus 170 ~s~W~l~~~~nGVrVy~~~~e~~~~~~~~s~~~~~Ka~~vV~aspe~Vf~~L~d--~~~~R~eWD~~~~e~~vVE~ID~~ 247 (744)
..+|++.+.++|++||++.... ..++.+|+++.|++++++|+++|.+ .. .|.+||..+.++++|+++|++
T Consensus 21 ~~~W~~~~~~~~i~v~~~~~~~-------~~~~~~k~~~~i~~~~~~v~~~l~d~~~~-~r~~Wd~~~~~~~~le~id~~ 92 (206)
T cd08867 21 TDGWKVLKTVKNITVSWKPSTE-------FTGHLYRAEGIVDALPEKVIDVIIPPCGG-LRLKWDKSLKHYEVLEKISED 92 (206)
T ss_pred cCCcEEEEcCCCcEEEEecCCC-------CCCEEEEEEEEEcCCHHHHHHHHHhcCcc-ccccccccccceEEEEEeCCC
Confidence 3799999999999999985321 2347899999999999999999998 44 699999999999999999999
Q ss_pred EEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCC-CCCceEEEE
Q 004576 248 SDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSN-QGKQSIVKH 326 (744)
Q Consensus 248 tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~-~~~~c~VTy 326 (744)
++|+|+.+.. ...+++++||||++++|++.++|.|+++.+||+||.+|+.+|+|||++..|||+|+|+. ++++|.+||
T Consensus 93 ~~i~~~~~p~-~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~ 171 (206)
T cd08867 93 LCVGRTITPS-AAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVL 171 (206)
T ss_pred eEEEEEEccc-cccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEE
Confidence 9999975321 11245999999999999999888999999999999999999999999999999999985 345799999
Q ss_pred EEEEeCCcccccccccchhhHHHHHHHHHHHHHHHH
Q 004576 327 MLAVDWKYWKLYLRPSSARSITIRMLERVAALRELF 362 (744)
Q Consensus 327 i~qvDpkGwiP~~~~~~~~~~~~~mL~~va~LRe~~ 362 (744)
++++|||||+|.|+ ....+...++..+.+||+++
T Consensus 172 ~~~~DpkG~iP~~l--vn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 172 YVQTDLRGMIPQSL--VESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred EEEeccCCCCcHHH--HHhhhhhhHHHHHHHHHHhc
Confidence 99999999999983 33445556778889999875
No 14
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=99.97 E-value=7.5e-31 Score=262.74 Aligned_cols=180 Identities=13% Similarity=0.191 Sum_probs=160.6
Q ss_pred cCCCCEEEEeeCCeEEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEecCCcE
Q 004576 169 APSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHS 248 (744)
Q Consensus 169 a~s~W~l~~~~nGVrVy~~~~e~~~~~~~~s~~~~~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~t 248 (744)
..++|++.+.++|+.|+++..++ +.+++||++|+|+..+++|++.+.+.. .|.+||.+++++++||+||++|
T Consensus 21 ~~~~Wkl~k~~~~~~v~~k~~~e-------f~gkl~R~Egvv~~~~~ev~d~v~~~~-~r~~Wd~~v~~~~Iie~Id~dt 92 (202)
T cd08902 21 LEEEWRVAKKSKDVTVWRKPSEE-------FGGYLYKAQGVVEDVYNRIVDHIRPGP-YRLDWDSLMTSMDIIEEFEENC 92 (202)
T ss_pred cccCcEEEEeCCCEEEEEecCCc-------CCCceEEEEEEecCCHHHHHHHHhccc-chhcccchhhheeHhhhhcCCc
Confidence 46799999999999999997643 467999999999999999999999876 5999999999999999999999
Q ss_pred EEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCC-CCCceEEEEE
Q 004576 249 DVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSN-QGKQSIVKHM 327 (744)
Q Consensus 249 dIvY~~~~~~~lp~~vs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~-~~~~c~VTyi 327 (744)
.|+|++.... +.+.++|||||.+|++.+.+||. +++..|++|+..|| |||||+++++||++.|+. ++++|.+||+
T Consensus 93 ~I~~yvt~~~-~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~~~pp--g~VRgen~p~g~i~~Pl~~~p~k~~~t~~ 168 (202)
T cd08902 93 CVMRYTTAGQ-LLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYEEARP--NFVRGFNHPCGWFCVPLKDNPSHSLLTGY 168 (202)
T ss_pred EEEEEEcccC-CcCccCccceEEEEEEEEeCCCe-EEEEeeecCCCCCC--CeEeecccccEEEEEECCCCCCceEEEEE
Confidence 9986654433 34679999999999999988885 77799999998888 999999999999999995 4578999999
Q ss_pred EEEeCCcccccccccchhhHHHHHHHHHHHHHHHH
Q 004576 328 LAVDWKYWKLYLRPSSARSITIRMLERVAALRELF 362 (744)
Q Consensus 328 ~qvDpkGwiP~~~~~~~~~~~~~mL~~va~LRe~~ 362 (744)
+|+|+|||+|+. ..++.++..|++...+||..+
T Consensus 169 lq~DLkG~LPqs--iIdq~~~~~~~~F~~~Lrk~~ 201 (202)
T cd08902 169 IQTDLRGMLPQS--AVDTAMASTLVNFYSDLKKAL 201 (202)
T ss_pred EEecCCCCccHH--HHHHHhhHHHHHHHHHHHHhc
Confidence 999999999994 677889999999999999875
No 15
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=99.97 E-value=1.1e-30 Score=261.95 Aligned_cols=179 Identities=22% Similarity=0.329 Sum_probs=153.4
Q ss_pred cCCCCEEEEeeCCeEEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEecCCcE
Q 004576 169 APSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHS 248 (744)
Q Consensus 169 a~s~W~l~~~~nGVrVy~~~~e~~~~~~~~s~~~~~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~t 248 (744)
...||......+|+.|+.+..+ ++ ...+.+|+..+|+++|.+|+..+.. .|..||.++.+.++||+||+++
T Consensus 25 k~kgW~~~~~~~~vev~~kk~~-d~-----~~l~lwk~s~ei~~~p~~vl~rvL~---dR~~WD~~m~e~~~Ie~Ld~n~ 95 (205)
T cd08907 25 RFKGWHSAPGPDNTELACKKVG-DG-----HPLRLWKVSTEVEAPPSVVLQRVLR---ERHLWDEDLLHSQVIEALENNT 95 (205)
T ss_pred ccCCceeecCCCCcEEEEEeCC-CC-----CceEEEEEEEEecCCCHHHHHHHhh---chhhhhHHHHhhhhheeecCCC
Confidence 3469999999999999877433 11 3457999999999877777666554 4999999999999999999999
Q ss_pred EEEEEEeecCCCCCCCCCceEEEEEEEEEc-CCCeEEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceEEEEE
Q 004576 249 DVVHKLLYSDWLPWGMQRRDLLVRRYWRRE-DDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHM 327 (744)
Q Consensus 249 dIvY~~~~~~~lp~~vs~RDFV~lR~wrr~-~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~VTyi 327 (744)
||+|+.++. |.|+++||||++|+|+.+ ..|.|+|+++||.|++.||.+| |||..+.+||+|+|++.+ +|+|||+
T Consensus 96 dI~yY~~~~---~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~g-VRa~~l~sgYlIep~g~g-~s~ltyi 170 (205)
T cd08907 96 EVYHYVTDS---MAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEAG-VRAVLLTSQYLIEPCGMG-RSRLTHI 170 (205)
T ss_pred EEEEEEecC---CCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCCCC-eEEEEEeccEEEEECCCC-CeEEEEE
Confidence 999998764 578999999999999876 6678999999999999999999 999999999999999765 7999999
Q ss_pred EEEeCCcccccccccchhhHHHHHHHHHHHHHHHHHh
Q 004576 328 LAVDWKYWKLYLRPSSARSITIRMLERVAALRELFQA 364 (744)
Q Consensus 328 ~qvDpkGwiP~~~~~~~~~~~~~mL~~va~LRe~~~~ 364 (744)
+++|++||+|.||++.-.++.. ..+.+||+.|..
T Consensus 171 ~rvD~rG~~P~Wynk~~g~~~a---~~l~~ir~sF~~ 204 (205)
T cd08907 171 CRADLRGRSPDWYNKVFGHLCA---MEVARIRDSFPT 204 (205)
T ss_pred EEeCCCCCCcHHHHHhHHHHHH---HHHHHHHhhccC
Confidence 9999999999999866555543 456899998863
No 16
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.97 E-value=8.9e-30 Score=261.37 Aligned_cols=181 Identities=21% Similarity=0.320 Sum_probs=155.0
Q ss_pred ccCCCCEEEEeeCCeEEEEEeecCCCCCccCCCCceEEEEEEe-cCCHHHHHHHHHcCCCCccccccccceeEEEEecCC
Q 004576 168 IAPSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVV-DGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDG 246 (744)
Q Consensus 168 ~a~s~W~l~~~~nGVrVy~~~~e~~~~~~~~s~~~~~Ka~~vV-~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~ 246 (744)
....+|++..+++||+||++..++ +....+|+++++ +++++.++++|+|.+ .|++||+++.++++|+++|+
T Consensus 20 ~~~~~W~~~~~~~gi~iy~r~~~~-------~~~~~~k~~~~~~~~s~e~~~~~l~D~~-~r~~Wd~~~~e~~~ie~~d~ 91 (222)
T cd08871 20 DSTDGWKLKYNKNNVKVWTKNPEN-------SSIKMIKVSAIFPDVPAETLYDVLHDPE-YRKTWDSNMIESFDICQLNP 91 (222)
T ss_pred cCCCCcEEEEcCCCeEEEEeeCCC-------CceEEEEEEEEeCCCCHHHHHHHHHChh-hhhhhhhhhceeEEEEEcCC
Confidence 345689999999999999997653 345789999987 689999999999987 69999999999999999999
Q ss_pred cEEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceEEEE
Q 004576 247 HSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKH 326 (744)
Q Consensus 247 ~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~VTy 326 (744)
+++|+|+.++. |||+++||||++|+|+..+ |.|+|+.+|+.|+.+|+.+|+|||.+..+||+|+|++.+ +|+|||
T Consensus 92 ~~~i~y~~~~~---P~pvs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~-~t~vt~ 166 (222)
T cd08871 92 NNDIGYYSAKC---PKPLKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPK-GCTLTY 166 (222)
T ss_pred CCEEEEEEeEC---CCCCCCCeEEEEEEEEeCC-CEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCC-CEEEEE
Confidence 99999988763 6789999999999998866 789999999999999999999999999999999999754 699999
Q ss_pred EEEEeCCccccccc-ccchhhHHHHHHHHHHHHHHHHHh
Q 004576 327 MLAVDWKYWKLYLR-PSSARSITIRMLERVAALRELFQA 364 (744)
Q Consensus 327 i~qvDpkGwiP~~~-~~~~~~~~~~mL~~va~LRe~~~~ 364 (744)
+.++|||||+|.|+ +.+....+..+ +.+||+.+.+
T Consensus 167 ~~~~Dp~G~IP~~lvN~~~~~~~~~~---l~~l~k~~~~ 202 (222)
T cd08871 167 VTQNDPKGSLPKWVVNKATTKLAPKV---MKKLHKAALK 202 (222)
T ss_pred EEecCCCCCcCHHHHHHHHHHHhHHH---HHHHHHHHHH
Confidence 99999999999994 44444544433 3455554443
No 17
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=99.97 E-value=6.9e-30 Score=260.56 Aligned_cols=183 Identities=16% Similarity=0.211 Sum_probs=153.7
Q ss_pred cCCCCEEEE-eeCCeEEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHH-HHHHcCCCCccccccccceeEEEEecCC
Q 004576 169 APSPWKIFG-CQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIF-QTLMSLGSSRSEWDFCFYRGCVVEHLDG 246 (744)
Q Consensus 169 a~s~W~l~~-~~nGVrVy~~~~e~~~~~~~~s~~~~~Ka~~vV~aspe~Vf-~~L~d~~~~R~eWD~~~~e~~vVE~ID~ 246 (744)
..++|++.+ .++|++||++..+. + ++.||++++|+++++.++ .++.|.+ .+++|+.++.++++|+++|+
T Consensus 23 ~~~~W~~~~~~~~gi~v~s~~~~~-------~-~k~~k~e~~i~~~~~~l~~~l~~d~e-~~~~W~~~~~~~~vl~~id~ 93 (209)
T cd08905 23 DQEGWKTEIVAENGDKVLSKVVPD-------I-GKVFRLEVVVDQPLDNLYSELVDRME-QMGEWNPNVKEVKILQRIGK 93 (209)
T ss_pred cccCCEEEEecCCCCEEEEEEcCC-------C-CcEEEEEEEecCCHHHHHHHHHhchh-hhceecccchHHHHHhhcCC
Confidence 456999996 58999999987652 2 389999999999999999 4555666 59999999999999999999
Q ss_pred cEEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCC-CCceEEE
Q 004576 247 HSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQ-GKQSIVK 325 (744)
Q Consensus 247 ~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~-~~~c~VT 325 (744)
++.|+|....| |..+++++||||++|+|++.+ +.++++..|+.|+.+|+++|||||+...|||+|+|+++ +.+|+||
T Consensus 94 ~~~i~y~~~~p-~p~~~vs~RD~V~~~~~~~~~-~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~ 171 (209)
T cd08905 94 DTLITHEVAAE-TAGNVVGPRDFVSVRCAKRRG-STCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLT 171 (209)
T ss_pred CceEEEEEecc-CCCCccCccceEEEEEEEEcC-CcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEE
Confidence 99999974332 322459999999999999874 56778889999999999999999999999999999964 3479999
Q ss_pred EEEEEeCCcccccccccchhhHHHHHHHHHHHHHHHHHh
Q 004576 326 HMLAVDWKYWKLYLRPSSARSITIRMLERVAALRELFQA 364 (744)
Q Consensus 326 yi~qvDpkGwiP~~~~~~~~~~~~~mL~~va~LRe~~~~ 364 (744)
|++++|||||+|.|+. ...++-.+++++.+||+++..
T Consensus 172 ~~~~~DpkG~iP~~lv--N~~~~~~~~~~~~~Lr~~~~~ 208 (209)
T cd08905 172 WLLSIDLKGWLPKSII--NQVLSQTQVDFANHLRQRMAS 208 (209)
T ss_pred EEEeecCCCCCCHHHH--HHHhHHhHHHHHHHHHHHHhc
Confidence 9999999999999933 334444567888999999863
No 18
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.97 E-value=6.1e-29 Score=250.42 Aligned_cols=184 Identities=26% Similarity=0.315 Sum_probs=155.2
Q ss_pred cccCCCCEEEEe-eCCeEEEEEeecCCCCCccCCCCceEEEEEEecCCHHH-HHHHHHcCCCCccccccccceeEEEEec
Q 004576 167 VIAPSPWKIFGC-QNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEA-IFQTLMSLGSSRSEWDFCFYRGCVVEHL 244 (744)
Q Consensus 167 v~a~s~W~l~~~-~nGVrVy~~~~e~~~~~~~~s~~~~~Ka~~vV~aspe~-Vf~~L~d~~~~R~eWD~~~~e~~vVE~I 244 (744)
..+..+|++... ++|+.+|++..++. +.+..+|++++|++++++ +.+++.|++ .|++||+++.++++||++
T Consensus 15 ~~~~~~W~~~~~~~~~~~~~~~~~~~~------~~~~~~k~~~~v~~~~~~~~~~~~~d~~-~r~~Wd~~~~~~~~ie~~ 87 (206)
T smart00234 15 AASEPGWVLSSENENGDEVRSILSPGR------SPGEASRAVGVVPMVCADLVEELMDDLR-YRPEWDKNVAKAETLEVI 87 (206)
T ss_pred hCCCCccEEccccCCcceEEEEccCCC------CceEEEEEEEEEecChHHHHHHHHhccc-chhhCchhcccEEEEEEE
Confidence 334578999997 89999999865421 356899999999999987 556777777 699999999999999999
Q ss_pred CCcEEEEEEEeecCCCCC-CCCCceEEEEEEEEEcCCCeEEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceE
Q 004576 245 DGHSDVVHKLLYSDWLPW-GMQRRDLLVRRYWRREDDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSI 323 (744)
Q Consensus 245 D~~tdIvY~~~~~~~lp~-~vs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~ 323 (744)
+++++|+|++++. || |+++||||++|+|++.++|.|+|+.+|+.|+.+|+.+|+|||++..+||+|+|++++ .|+
T Consensus 88 ~~~~~i~~~~~~~---~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~-~t~ 163 (206)
T smart00234 88 DNGTVIYHYVSKF---VAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNG-PSK 163 (206)
T ss_pred CCCCeEEEEEEec---ccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCC-CeE
Confidence 9999999988764 45 899999999999999888899999999999999999999999999999999999876 599
Q ss_pred EEEEEEEeCCcccccccc-cchhhHHHHHHHHHHHHHHHHHh
Q 004576 324 VKHMLAVDWKYWKLYLRP-SSARSITIRMLERVAALRELFQA 364 (744)
Q Consensus 324 VTyi~qvDpkGwiP~~~~-~~~~~~~~~mL~~va~LRe~~~~ 364 (744)
|||+.++|||||+|.|+. .+.+..+..+ +..||+.+..
T Consensus 164 vt~~~~~D~~G~iP~~lvn~~~~~~~~~~---~~~~~~~~~~ 202 (206)
T smart00234 164 VTWVSHADLKGWLPHWLVRSLIKSGLAEF---AKTWVATLQK 202 (206)
T ss_pred EEEEEEEecCCCccceeehhhhhhhHHHH---HHHHHHHHHH
Confidence 999999999999999944 4455555444 3555555543
No 19
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=99.97 E-value=3.6e-29 Score=259.55 Aligned_cols=190 Identities=19% Similarity=0.240 Sum_probs=152.2
Q ss_pred cccccccCCCCEEEEeeCCeEEEEEeecCCCCCccCCCCceEEEEEEec-CCHHHHHHHHHcCCCCccccccccceeEEE
Q 004576 163 TASDVIAPSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVD-GTSEAIFQTLMSLGSSRSEWDFCFYRGCVV 241 (744)
Q Consensus 163 ~~~dv~a~s~W~l~~~~nGVrVy~~~~e~~~~~~~~s~~~~~Ka~~vV~-aspe~Vf~~L~d~~~~R~eWD~~~~e~~vV 241 (744)
+..++.+ .+|+++.+++||+||++..+.++. ....+||+++|+ +++++++++|+|.+ +|.+||.++.++++|
T Consensus 19 ~~~~~~~-~~W~l~~~~~gikVy~r~~~~sg~-----~~~~~Ka~~~v~~vt~~~~~~~l~D~~-~r~~Wd~~~~~~~vi 91 (235)
T cd08872 19 ALEDVGA-DGWQLFAEEGEMKVYRREVEEDGV-----VLDPLKATHAVKGVTGHEVCHYFFDPD-VRMDWETTLENFHVV 91 (235)
T ss_pred HHccCCC-CCCEEEEeCCceEEEEEECCCCCc-----eeeeEEEEEEECCCCHHHHHHHHhChh-hHHHHHhhhheeEEE
Confidence 3334443 489999999999999998764322 112699999999 89999999999998 699999999999999
Q ss_pred EecCCcEEEEEEEeecCCCCCCCCCceEEEEEEEEEcCC-------CeEEEEEeccCCCCCCCCCCeEEEEEec----ee
Q 004576 242 EHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDD-------GTYVILYHSVNHKKCPKQKGYVRACLKS----GG 310 (744)
Q Consensus 242 E~ID~~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~~d-------GsyvI~~~SV~Hp~~Pp~~G~VRa~i~~----sG 310 (744)
|+++++++|+|+.++ +|||+++||||++++|++.++ +.|++++.|+.||.+|+++||||+.... ++
T Consensus 92 e~l~~~~~I~Y~~~k---~PwPvs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~ 168 (235)
T cd08872 92 ETLSQDTLIFHQTHK---RVWPAAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQT 168 (235)
T ss_pred EecCCCCEEEEEEcc---CCCCCCCcEEEEEEEEEecCccccccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeee
Confidence 999999999998765 478999999999999998754 6799999999999999999999999733 33
Q ss_pred --------EEEEeCCCCCceEEEEEEEEeCCcccccccccch-hhHHHHHHHHHHHHHHHHHhhcC
Q 004576 311 --------FVITPSNQGKQSIVKHMLAVDWKYWKLYLRPSSA-RSITIRMLERVAALRELFQAKAG 367 (744)
Q Consensus 311 --------wvI~Pl~~~~~c~VTyi~qvDpkGwiP~~~~~~~-~~~~~~mL~~va~LRe~~~~~~~ 367 (744)
|.++| +++ +|+|||++++|||||+|.|+.+.. +.. ....|..|-.|...+-.
T Consensus 169 ~i~~~~g~~~~t~-~~~-~~~ity~~~~dPgG~iP~wvvn~~~k~~---~P~~l~~~~~~~~~~~~ 229 (235)
T cd08872 169 FVSPPDGNQEITR-DNI-LCKITYVANVNPGGWAPASVLRAVYKRE---YPKFLKRFTSYVQEKTK 229 (235)
T ss_pred eeecCCCcccccC-CCC-eEEEEEEEEeCCCCCccHHHHHHHHHhh---chHHHHHHHHHHHHhcC
Confidence 44444 333 799999999999999999944332 222 22455777778776543
No 20
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=99.96 E-value=1.9e-28 Score=249.52 Aligned_cols=180 Identities=17% Similarity=0.130 Sum_probs=153.6
Q ss_pred cCCCCEEEEeeCCeEEEEEeecCCCCCccCCCCceEEEEEEe-cCCHHHHHHHHHcCCCCccccccccceeEEEEecCC-
Q 004576 169 APSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVV-DGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDG- 246 (744)
Q Consensus 169 a~s~W~l~~~~nGVrVy~~~~e~~~~~~~~s~~~~~Ka~~vV-~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~- 246 (744)
..++|+++.+++||+||++..++ +....||+++++ ++|+++++++++|.+ .|.+||.++.++++|++.++
T Consensus 19 ~~~~W~l~~~~~~i~Vy~r~~~~-------s~~~~~k~~~~~~d~s~~~~~~~~~D~~-~r~~Wd~~~~~~~~le~~~~~ 90 (207)
T cd08911 19 EPDGWEPFIEKKDMLVWRREHPG-------TGLYEYKVYGSFDDVTARDFLNVQLDLE-YRKKWDATAVELEVVDEDPET 90 (207)
T ss_pred cCCCcEEEEEcCceEEEEeccCC-------CCcEEEEEEEEEcCCCHHHHHHHHhCHH-HHHHHHhhheeEEEEEccCCC
Confidence 44679999999999999997663 345789999977 899999999999998 69999999999999999755
Q ss_pred cEEEEEEEeecCCCCCCCCCceEEEEEEEEEc-CCCeEEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCC--CCCceE
Q 004576 247 HSDVVHKLLYSDWLPWGMQRRDLLVRRYWRRE-DDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSN--QGKQSI 323 (744)
Q Consensus 247 ~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~-~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~--~~~~c~ 323 (744)
+++|+|+.++ +|||+++||||+.|.|.++ ++|.|+|+.+|+.||.+|+.+|+||+....|+|+|+|+. +.++|.
T Consensus 91 ~~~i~y~~~~---~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~ 167 (207)
T cd08911 91 GSEIIYWEMQ---WPKPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFE 167 (207)
T ss_pred CCEEEEEEEE---CCCCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeE
Confidence 8999998865 5789999999999998777 557889999999999999999999999999999999994 234799
Q ss_pred EEEEEEEeCCcccccccc-cchhhHHHHHHHHHHHHHHHH
Q 004576 324 VKHMLAVDWKYWKLYLRP-SSARSITIRMLERVAALRELF 362 (744)
Q Consensus 324 VTyi~qvDpkGwiP~~~~-~~~~~~~~~mL~~va~LRe~~ 362 (744)
++|+.+.|||||+|.|+. .+....+. ..+.+|++-+
T Consensus 168 ~~~~~~~dPgG~IP~~lvN~~~~~~~~---~~l~~l~~a~ 204 (207)
T cd08911 168 FVLTYFDNPGVNIPSYITSWVAMSGMP---DFLERLRNAA 204 (207)
T ss_pred EEEEEEeCCCCccCHHHHHHHHHhhcc---HHHHHHHHHH
Confidence 999999999999999944 33344443 4456676654
No 21
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=99.96 E-value=2.4e-28 Score=247.88 Aligned_cols=173 Identities=21% Similarity=0.312 Sum_probs=147.0
Q ss_pred CCEEEEeeCCeEEEEE-eecCCCCCccCCCCceEEEEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEecCCcEEE
Q 004576 172 PWKIFGCQNGLRLFKE-AKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDV 250 (744)
Q Consensus 172 ~W~l~~~~nGVrVy~~-~~e~~~~~~~~s~~~~~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~tdI 250 (744)
||......|++.++.+ ..++ +..+.||++++|+++|++|+.+|++ .|.+||..+.++++|+++|++++|
T Consensus 28 ~w~~~~~~~~~el~~~k~~~g-------s~l~~~r~~~~i~a~~~~vl~~lld---~~~~Wd~~~~e~~vIe~ld~~~~I 97 (204)
T cd08908 28 GWVSYSTSEQAELSYKKVSEG-------PPLRLWRTTIEVPAAPEEILKRLLK---EQHLWDVDLLDSKVIEILDSQTEI 97 (204)
T ss_pred CCcccCCCCcEEEEEeccCCC-------CCcEEEEEEEEeCCCHHHHHHHHHh---hHHHHHHHhhheEeeEecCCCceE
Confidence 5666666667777443 3331 4678999999999999999999987 389999999999999999999999
Q ss_pred EEEEeecCCCCCCCCCceEEEEEEEEEc-CCCeEEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceEEEEEEE
Q 004576 251 VHKLLYSDWLPWGMQRRDLLVRRYWRRE-DDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLA 329 (744)
Q Consensus 251 vY~~~~~~~lp~~vs~RDFV~lR~wrr~-~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~VTyi~q 329 (744)
+|+++.+ |||+++||||++|.|+.. .+|.|+|..+|+.|+.+|+. +|||....|||+|+|++++ +|+|||+++
T Consensus 98 ~Yy~~~~---PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~~--~VR~~~~~~~w~i~P~g~g-~t~vtyi~~ 171 (204)
T cd08908 98 YQYVQNS---MAPHPARDYVVLRTWRTNLPKGACALLATSVDHDRAPVA--GVRVNVLLSRYLIEPCGSG-KSKLTYMCR 171 (204)
T ss_pred EEEEccC---CCCCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCCcC--ceEEEEEeeEEEEEECCCC-cEEEEEEEE
Confidence 9988764 689999999999999875 78899999999999999975 6999999999999999765 799999999
Q ss_pred EeCCcccccccccchhhHHHHHHHHHHHHHHHHH
Q 004576 330 VDWKYWKLYLRPSSARSITIRMLERVAALRELFQ 363 (744)
Q Consensus 330 vDpkGwiP~~~~~~~~~~~~~mL~~va~LRe~~~ 363 (744)
+||||++|.|+++...+++. ..+.+||+.|.
T Consensus 172 ~DPgG~iP~W~~N~~g~~~~---~~~~~~r~sf~ 202 (204)
T cd08908 172 IDLRGHMPEWYTKSFGHLCA---AEVVKIRDSFS 202 (204)
T ss_pred eCCCCCCcHHHHhhHHHHHH---HHHHHHHhhcc
Confidence 99999999997755444433 45689999985
No 22
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.95 E-value=4.9e-27 Score=236.08 Aligned_cols=187 Identities=28% Similarity=0.464 Sum_probs=154.2
Q ss_pred cccCCCCEEEEeeCCeEEEEE-eecCCCCCccCCCCceEEEEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEecC
Q 004576 167 VIAPSPWKIFGCQNGLRLFKE-AKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLD 245 (744)
Q Consensus 167 v~a~s~W~l~~~~nGVrVy~~-~~e~~~~~~~~s~~~~~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID 245 (744)
.....+|++..++++..++.. ..+.++ ..+..+|++++|++++++++..|++.. . +||+.+.++++||+++
T Consensus 15 ~~~~~~W~~~~~~~~~~~~~~~~~~~~~-----~~~~~~k~~~~v~~~~~~~~~~~~~~~--~-~Wd~~~~~~~~le~~~ 86 (206)
T PF01852_consen 15 QEDEDGWKLYKDKKNGDVYYKKVSPSDS-----CPIKMFKAEGVVPASPEQVVEDLLDDR--E-QWDKMCVEAEVLEQID 86 (206)
T ss_dssp HHTCTTCEEEEEETTTCEEEEEEECSSS-----TSCEEEEEEEEESSCHHHHHHHHHCGG--G-HHSTTEEEEEEEEEEE
T ss_pred hcCCCCCeEeEccCCCeEEEEEeCcccc-----ccceEEEEEEEEcCChHHHHHHHHhhH--h-hcccchhhheeeeecC
Confidence 345679999996665555444 333221 156899999999999999999999743 2 9999999999999999
Q ss_pred CcEEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEEEEEeccCCCCCCC-CCCeEEEEEeceeEEEEeCCCCCceEE
Q 004576 246 GHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYVILYHSVNHKKCPK-QKGYVRACLKSGGFVITPSNQGKQSIV 324 (744)
Q Consensus 246 ~~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~~Pp-~~G~VRa~i~~sGwvI~Pl~~~~~c~V 324 (744)
++++|+|..++..| |+|+++||||++|+|++..+|.|+|+.+|++||.+|+ .+|+|||++..+||+|+|++++ .|+|
T Consensus 87 ~~~~i~~~~~~~~~-~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~-~~~v 164 (206)
T PF01852_consen 87 EDTDIVYFVMKSPW-PGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDG-RTRV 164 (206)
T ss_dssp TTEEEEEEEEE-CT-TTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTC-EEEE
T ss_pred CCCeEEEEEecccC-CCCCCCcEEEEEEEEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCC-CceE
Confidence 99999999987653 4599999999999999988999999999999999999 9999999999999999999876 5999
Q ss_pred EEEEEEeCCcccccccc-cchhhHHHHHHHHHHHHHHHHHhhc
Q 004576 325 KHMLAVDWKYWKLYLRP-SSARSITIRMLERVAALRELFQAKA 366 (744)
Q Consensus 325 Tyi~qvDpkGwiP~~~~-~~~~~~~~~mL~~va~LRe~~~~~~ 366 (744)
||+.++|||||+|.|+. .+.... +...+..||+.+++..
T Consensus 165 t~~~~~D~~G~iP~~~~n~~~~~~---~~~~~~~~~~~~~~~~ 204 (206)
T PF01852_consen 165 TYVSQVDPKGWIPSWLVNMVVKSQ---PPNFLKNLRKALKKQK 204 (206)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH---HHHHHHHHHHHHHHCC
T ss_pred EEEEEECCCCCChHHHHHHHHHHh---HHHHHHHHHHHHHHhc
Confidence 99999999999999844 333333 4566788999888753
No 23
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=99.95 E-value=1.5e-27 Score=243.02 Aligned_cols=178 Identities=16% Similarity=0.195 Sum_probs=150.0
Q ss_pred cCCCCEEEEeeCCeEEEEEeecCCCCCccCCCCceEEEEEEec-CCHHHHHHHHHcCCCCccccccccceeEEEEecCCc
Q 004576 169 APSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVD-GTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGH 247 (744)
Q Consensus 169 a~s~W~l~~~~nGVrVy~~~~e~~~~~~~~s~~~~~Ka~~vV~-aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~ 247 (744)
+.++|+++.+++||+||++..++ +....|||+++++ +++++++++|+|.+ +|.+||.++.+ +++..+++
T Consensus 23 ~~~~W~l~~~~~~i~Vy~r~~~~-------s~~~~~k~~~~~~~~s~~~~~~~l~D~~-~r~~Wd~~~~~--~~~~~~~~ 92 (207)
T cd08910 23 DGAAWELLVESSGISIYRLLDEQ-------SGLYEYKVFGVLEDCSPSLLADVYMDLE-YRKQWDQYVKE--LYEKECDG 92 (207)
T ss_pred CCCCeEEEEecCCeEEEEeccCC-------CCcEEEEEEEEEcCCCHHHHHHHHhCHH-HHHHHHHHHHh--heeecCCC
Confidence 34679999999999999997653 3457999999998 79999999999988 69999999987 67888989
Q ss_pred EEEEEEEeecCCCCCCCCCceEEEEEEEEEc-CCC--eEEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceEE
Q 004576 248 SDVVHKLLYSDWLPWGMQRRDLLVRRYWRRE-DDG--TYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIV 324 (744)
Q Consensus 248 tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~-~dG--syvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~V 324 (744)
++|+|+.++ +|||+++||||++|+++.. .+| .++|+.+|+.||.+|+++|+||+....++|+|+|.+++ +|++
T Consensus 93 ~~i~y~~~k---~PwPvs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~-~t~i 168 (207)
T cd08910 93 ETVIYWEVK---YPFPLSNRDYVYIRQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKK-GSKV 168 (207)
T ss_pred CEEEEEEEE---cCCCCCCceEEEEEEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCC-ceEE
Confidence 999999876 4789999999999888754 333 47889999999999999999999999999999998654 6999
Q ss_pred EEEEEEeCCcccccccc-cchhhHHHHHHHHHHHHHHHHH
Q 004576 325 KHMLAVDWKYWKLYLRP-SSARSITIRMLERVAALRELFQ 363 (744)
Q Consensus 325 Tyi~qvDpkGwiP~~~~-~~~~~~~~~mL~~va~LRe~~~ 363 (744)
+|+.+.||||++|.|+. .+....+ ...+.+||+.+.
T Consensus 169 ~~~~~~DPgG~IP~wlvN~~~~~~~---~~~l~~l~ka~~ 205 (207)
T cd08910 169 FMYYFDNPGGMIPSWLINWAAKNGV---PNFLKDMQKACQ 205 (207)
T ss_pred EEEEEeCCCCcchHHHHHHHHHHhh---HHHHHHHHHHHh
Confidence 99999999999999944 3334443 355577777653
No 24
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=99.95 E-value=1.7e-26 Score=235.40 Aligned_cols=178 Identities=16% Similarity=0.178 Sum_probs=153.4
Q ss_pred CCCEEEEeeCC----eEEEEEeecCCCCCccCCCCceEEEEEEe-cCCHHHHHHHHHcCCCCccccccccceeEEEEecC
Q 004576 171 SPWKIFGCQNG----LRLFKEAKDWDSRGRHWDDHPAIMAVGVV-DGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLD 245 (744)
Q Consensus 171 s~W~l~~~~nG----VrVy~~~~e~~~~~~~~s~~~~~Ka~~vV-~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID 245 (744)
.+|+++.+++| |+||++..++ +....||+++++ ++|+++++++|+|.+ .|++||.++.++++|+..+
T Consensus 22 ~~W~~~~~k~~~~~~i~vy~r~~~~-------s~~~~~k~~~~~~~~s~~~~~~~l~D~~-~r~~Wd~~~~~~~~le~~~ 93 (209)
T cd08870 22 QAWQQVMDKSTPDMSYQAWRRKPKG-------TGLYEYLVRGVFEDCTPELLRDFYWDDE-YRKKWDETVIEHETLEEDE 93 (209)
T ss_pred CcceEhhhccCCCceEEEEecccCC-------CCceEEEEEEEEcCCCHHHHHHHHcChh-hHhhhhhheeeEEEEEecC
Confidence 68999999999 9999997653 345789999999 569999999999988 6999999999999999865
Q ss_pred C-cEEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCC-CCCceE
Q 004576 246 G-HSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSN-QGKQSI 323 (744)
Q Consensus 246 ~-~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~-~~~~c~ 323 (744)
+ +++|+|+.++ +|||+++||||+.|.++...+|.++|..+|+.||.+|+. |+||+....++|+|+|+. ++.+|.
T Consensus 94 ~~~~~i~y~~~~---~P~P~s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~~P~~-~~vRv~~~~~~~~i~p~~~~~~~t~ 169 (209)
T cd08870 94 KSGTEIVRWVKK---FPFPLSDREYVIARRLWESDDRSYVCVTKGVPYPSVPRS-GRKRVDDYESSLVIRAVKGDGQGSA 169 (209)
T ss_pred CCCcEEEEEEEE---CCCcCCCceEEEEEEEEEcCCCEEEEEEeCCcCCCCCCC-CcEEEEEEEeEEEEEEecCCCCceE
Confidence 4 5899998875 578999999999998887778899999999999999998 999999999999999993 334799
Q ss_pred EEEEEEEeCCcccccccccch-hhHHHHHHHHHHHHHHHHH
Q 004576 324 VKHMLAVDWKYWKLYLRPSSA-RSITIRMLERVAALRELFQ 363 (744)
Q Consensus 324 VTyi~qvDpkGwiP~~~~~~~-~~~~~~mL~~va~LRe~~~ 363 (744)
++|+.+.||+|++|.|+.+.. ... +...+.+||+.+.
T Consensus 170 ~~~~~~~dp~G~IP~wlvN~~~~~~---~~~~l~~l~~a~~ 207 (209)
T cd08870 170 CEVTYFHNPDGGIPRELAKLAVKRG---MPGFLKKLENALR 207 (209)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHhh---hHHHHHHHHHHHh
Confidence 999999999999999955433 333 3466688887764
No 25
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.95 E-value=5.5e-26 Score=223.70 Aligned_cols=159 Identities=33% Similarity=0.557 Sum_probs=145.6
Q ss_pred CCCEEEEeeCCeEEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEecCCcEEE
Q 004576 171 SPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDV 250 (744)
Q Consensus 171 s~W~l~~~~nGVrVy~~~~e~~~~~~~~s~~~~~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~tdI 250 (744)
.+|++..+++|++||.+..+. +....+|+++.|++|+++|+++|.+.+ .|++||..+.++++|+++++++.|
T Consensus 15 ~~W~~~~~~~~v~vy~~~~~~-------~~~~~~k~~~~i~~~~~~v~~~l~d~~-~~~~w~~~~~~~~vl~~~~~~~~i 86 (193)
T cd00177 15 EGWKLVKEKDGVKIYTKPYED-------SGLKLLKAEGVIPASPEQVFELLMDID-LRKKWDKNFEEFEVIEEIDEHTDI 86 (193)
T ss_pred CCeEEEEECCcEEEEEecCCC-------CCceeEEEEEEECCCHHHHHHHHhCCc-hhhchhhcceEEEEEEEeCCCeEE
Confidence 589999999999999997653 245799999999999999999999977 599999999999999999999999
Q ss_pred EEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceEEEEEEEE
Q 004576 251 VHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAV 330 (744)
Q Consensus 251 vY~~~~~~~lp~~vs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~VTyi~qv 330 (744)
+|..++. |||+++||||+++++....+|.++++.+|++|+.+|+.+|+|||.+..+||+|+|++++ .|+|||++++
T Consensus 87 ~~~~~~~---p~p~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~-~~~vt~~~~~ 162 (193)
T cd00177 87 IYYKTKP---PWPVSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPG-KTKVTYVLQV 162 (193)
T ss_pred EEEEeeC---CCccCCccEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCC-CEEEEEEEee
Confidence 9998764 56799999999999998887899999999999999999999999999999999999654 7999999999
Q ss_pred eCCcccccccc
Q 004576 331 DWKYWKLYLRP 341 (744)
Q Consensus 331 DpkGwiP~~~~ 341 (744)
||+||+|.|+.
T Consensus 163 D~~g~iP~~~~ 173 (193)
T cd00177 163 DPKGSIPKSLV 173 (193)
T ss_pred CCCCCccHHHH
Confidence 99999999733
No 26
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.94 E-value=1.4e-25 Score=224.53 Aligned_cols=181 Identities=21% Similarity=0.321 Sum_probs=153.5
Q ss_pred ccccCCCCEEEEeeCCeEEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEecC
Q 004576 166 DVIAPSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLD 245 (744)
Q Consensus 166 dv~a~s~W~l~~~~nGVrVy~~~~e~~~~~~~~s~~~~~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID 245 (744)
.+....+|+++.+++|++||++..+. +....+|++++|+++|++|++++.|++ .|++||+.+.++++||+++
T Consensus 12 ~~~~~~~W~~~~~~~~v~v~~~~~~~-------~~~~~~k~~~~i~~s~e~v~~vi~d~e-~~~~w~~~~~~~~vie~~~ 83 (195)
T cd08876 12 ALAPDGDWQLVKDKDGIKVYTRDVEG-------SPLKEFKAVAEVDASIEAFLALLRDTE-SYPQWMPNCKESRVLKRTD 83 (195)
T ss_pred ccCCCCCCEEEecCCCeEEEEEECCC-------CCeEEEEEEEEEeCCHHHHHHHHhhhH-hHHHHHhhcceEEEeecCC
Confidence 33445569999999999999997653 234789999999999999999999999 5999999999999999999
Q ss_pred CcEEEEEEEeecCCCCCCCCCceEEEEEEEEEcC-CCeEEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceEE
Q 004576 246 GHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRRED-DGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIV 324 (744)
Q Consensus 246 ~~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~~-dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~V 324 (744)
++++++|..++. |||+++||||+.+.++... ++.++|...|+.|+ +|+.+||||+....++|.|+|++++ +|+|
T Consensus 84 ~~~~i~~~~~~~---p~pvs~Rdfv~~~~~~~~~~~~~~~i~~~s~~~~-~P~~~~~vR~~~~~~~~~i~~~~~~-~t~v 158 (195)
T cd08876 84 DNERSVYTVIDL---PWPVKDRDMVLRSTTEQDADDGSVTITLEAAPEA-LPEQKGYVRIKTVEGQWTFTPLGNG-KTRV 158 (195)
T ss_pred CCcEEEEEEEec---ccccCCceEEEEEEEEEcCCCCEEEEEeecCCcc-CCCCCCeEEceeceeeEEEEECCCC-eEEE
Confidence 989999988763 6789999999998877664 78899999999988 8999999999999999999999765 7999
Q ss_pred EEEEEEeCCccccccccc-chhhHHHHHHHHHHHHHHHH
Q 004576 325 KHMLAVDWKYWKLYLRPS-SARSITIRMLERVAALRELF 362 (744)
Q Consensus 325 Tyi~qvDpkGwiP~~~~~-~~~~~~~~mL~~va~LRe~~ 362 (744)
||++++||+||+|.|+.+ .....+ ...+++||+.+
T Consensus 159 t~~~~~dp~g~iP~~lv~~~~~~~~---~~~l~~l~~~~ 194 (195)
T cd08876 159 TYQAYADPGGSIPGWLANAFAKDAP---YNTLENLRKQL 194 (195)
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHHH---HHHHHHHHHhh
Confidence 999999999999998443 333333 34557777654
No 27
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.92 E-value=2.7e-24 Score=219.84 Aligned_cols=187 Identities=21% Similarity=0.286 Sum_probs=158.4
Q ss_pred ccccccccCCCCEEEEeeCCeEEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHHHHHHcCCCCccccccccceeEEE
Q 004576 162 ATASDVIAPSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVV 241 (744)
Q Consensus 162 ~~~~dv~a~s~W~l~~~~nGVrVy~~~~e~~~~~~~~s~~~~~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vV 241 (744)
.+..++-+.++|++..+++|++||.+..+. +....+|++++|+++++.++++|.|.+ .+++|++.+.++++|
T Consensus 13 ~~~~~l~~~~~W~~~~~~~~i~v~~r~~~~-------~~~~~~k~e~~i~~~~~~~~~vl~d~~-~~~~W~p~~~~~~~l 84 (215)
T cd08877 13 ENLKDLDESDGWTLQKESEGIRVYYKFEPD-------GSLLSLRMEGEIDGPLFNLLALLNEVE-LYKTWVPFCIRSKKV 84 (215)
T ss_pred HHHhcccCCCCcEEeccCCCeEEEEEeCCC-------CCEEEEEEEEEecCChhHeEEEEehhh-hHhhhcccceeeEEE
Confidence 445566668899999999999999987552 235899999999999999999999998 699999999999999
Q ss_pred EecCCcEEEEEEEeecCCCCCCCCCceEEEEEEE-EEc-CCCeEEEEEeccCCCC---------CCCCC-CeEEEEEece
Q 004576 242 EHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYW-RRE-DDGTYVILYHSVNHKK---------CPKQK-GYVRACLKSG 309 (744)
Q Consensus 242 E~ID~~tdIvY~~~~~~~lp~~vs~RDFV~lR~w-rr~-~dGsyvI~~~SV~Hp~---------~Pp~~-G~VRa~i~~s 309 (744)
++++.++.|+|+.+. +|||+++||+|+.... ... ++|.++|+..|+.|+. +|+.+ |+||+....+
T Consensus 85 ~~~~~~~~v~y~~~~---~PwPv~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~ 161 (215)
T cd08877 85 KQLGRADKVCYLRVD---LPWPLSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYY 161 (215)
T ss_pred eecCCceEEEEEEEe---CceEecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecc
Confidence 999999999998875 5789999999986332 233 7899999999999876 79999 9999999999
Q ss_pred eEEEEeCCCCCceEEEEEEEEeCCcc-cccccc-cchhhHHHHHHHHHHHHHHHHH
Q 004576 310 GFVITPSNQGKQSIVKHMLAVDWKYW-KLYLRP-SSARSITIRMLERVAALRELFQ 363 (744)
Q Consensus 310 GwvI~Pl~~~~~c~VTyi~qvDpkGw-iP~~~~-~~~~~~~~~mL~~va~LRe~~~ 363 (744)
||+|+|++++ +|.++|+.++||||+ +|.|+. .+.+.++..++ .+||..++
T Consensus 162 ~~~i~p~~~~-~t~v~~~~~~DP~g~~IP~~liN~~~k~~~~~~~---~~l~k~~~ 213 (215)
T cd08877 162 GFVITPISPT-KCYLRFVANVDPKMSLVPKSLLNFVARKFAGLLF---EKIQKAAK 213 (215)
T ss_pred eEEEEEcCCC-CeEEEEEEEcCCCcccCCHHHHHHHHHHHHHHHH---HHHHHHHh
Confidence 9999999765 799999999999998 999955 44466666555 66666554
No 28
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=99.87 E-value=4e-21 Score=193.87 Aligned_cols=166 Identities=19% Similarity=0.194 Sum_probs=143.5
Q ss_pred cccCCCCEEEEeeCCeEEEEEeecCCCCCccCCCCceEEEEEEe-cCCHHHHHHHHHcCCCCccccccccceeEEEEecC
Q 004576 167 VIAPSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVV-DGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLD 245 (744)
Q Consensus 167 v~a~s~W~l~~~~nGVrVy~~~~e~~~~~~~~s~~~~~Ka~~vV-~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID 245 (744)
..+..+|+++.+++++.||....+.. ....||+.++. ++||+.|+++++|.+ +|++||.++.+.++||...
T Consensus 25 ~~~~~~We~~~~k~~~~i~~q~~~~~-------g~~~Yk~~~vfeDvtp~~~~Dv~~D~e-YRkkWD~~vi~~e~ie~d~ 96 (219)
T KOG2761|consen 25 CDAGQGWELVMDKSTPSIWRQRRPKT-------GLYEYKSRTVFEDVTPEIVRDVQWDDE-YRKKWDDMVIELETIEEDP 96 (219)
T ss_pred cCcccchhhhcccCCceEEEEcccCC-------CCEEEEEEEEEcCCCHHHHHHHHhhhH-HHHHHHHHhhhheeeeecC
Confidence 45667999999999999998533322 24789999998 599999999999988 8999999999999999865
Q ss_pred -CcEEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEEEEEeccCCCCCCCCCCeEEEEEeceeEEEE-eC--CCCCc
Q 004576 246 -GHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVIT-PS--NQGKQ 321 (744)
Q Consensus 246 -~~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~-Pl--~~~~~ 321 (744)
-+++|+|+..+ +|.|+++||||++|.|...++..|+|+.+||.|+..|+++++||+...-+||+|+ +. .+++.
T Consensus 97 ~tg~~vv~w~~k---fP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~~~ 173 (219)
T KOG2761|consen 97 VTGTEVVYWVKK---FPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRSGDEQG 173 (219)
T ss_pred CCCceEEEEEEe---CCcccCCccEEEEEEEEecCCceEEEEEecccCCCcCCcCCcEEEEEEEEEEEEEcccccCCCCc
Confidence 57789998865 5789999999999988877656799999999999999999999999999999999 54 34567
Q ss_pred eEEEEEEEEeCCcccccccccc
Q 004576 322 SIVKHMLAVDWKYWKLYLRPSS 343 (744)
Q Consensus 322 c~VTyi~qvDpkGwiP~~~~~~ 343 (744)
|.++|..+.|++|-+|.|..+.
T Consensus 174 ~~~~~~~~~~p~~~iP~~~v~~ 195 (219)
T KOG2761|consen 174 CACEYLYFHNPGGGIPKWVVKL 195 (219)
T ss_pred cEEEEEEEECCCCCCcHHHHHH
Confidence 9999999999999999985533
No 29
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=99.63 E-value=2.4e-16 Score=171.88 Aligned_cols=170 Identities=16% Similarity=0.273 Sum_probs=141.7
Q ss_pred ccccccccccCCCCEEEEeeCCeEEEEEeecCCCCCccCCCCceEEEEEEec-CCHHHHHHHHHcCCCCcccccccccee
Q 004576 160 SEATASDVIAPSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVD-GTSEAIFQTLMSLGSSRSEWDFCFYRG 238 (744)
Q Consensus 160 n~~~~~dv~a~s~W~l~~~~nGVrVy~~~~e~~~~~~~~s~~~~~Ka~~vV~-aspe~Vf~~L~d~~~~R~eWD~~~~e~ 238 (744)
..+.+.++...+.|+++...+.+++|+++.++.+.. ....||...|. +++.++++++++.+ .|.+|+.++..+
T Consensus 392 ~~~~~~~~g~d~nwqlFaeegemkmy~re~eeng~~-----~Dplka~hav~gvta~e~chyf~~~~-~rndwettle~~ 465 (611)
T KOG1739|consen 392 MTYSLQDVGGDANWQLFAEEGEMKMYRREVEENGIV-----LDPLKATHAVKGVTAHEVCHYFWNVD-VRNDWETTLENF 465 (611)
T ss_pred hhhhcccccccchhhhhcccCCccccceeeccCCcc-----cCccccchhhcchhHHHHHHHHcChh-hhcchhhhhhhc
Confidence 467778888888899999999999999987755442 35788887666 69999999999988 799999999999
Q ss_pred EEEEecCCcEEEEEEEeecCCCCCCCCCceEEEEEEEEEc----CC--CeEEEEEeccCCCCCCCCCCeEEEEEecee--
Q 004576 239 CVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRRE----DD--GTYVILYHSVNHKKCPKQKGYVRACLKSGG-- 310 (744)
Q Consensus 239 ~vVE~ID~~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~----~d--GsyvI~~~SV~Hp~~Pp~~G~VRa~i~~sG-- 310 (744)
.|||+|.+++-|+|++.+.. ||.++||-+++.+.|+. ++ +.|++|+.|++|.+.|..+.+||+.+..+-
T Consensus 466 ~vve~is~d~~~~~qthkrv---wpasqrd~lf~shirki~~~~e~gad~wivcn~s~~~a~~pl~n~cvr~~ltv~mic 542 (611)
T KOG1739|consen 466 HVVETISDDAIIIYQTHKRV---WPASQRDVLFLSHIRKIPALTENGADTWIVCNFSVDHASAPLNNRCVRAKLTVAMIC 542 (611)
T ss_pred eeeeeecCCeEEEEeccccc---CCCCcchhHHHHHHhhcccccCCCCceEEEecCccccccCccCCceEEEeeeeeeee
Confidence 99999999999999997765 69999999999888874 23 479999999999999999999999775431
Q ss_pred -EEE------EeCC-CCCceEEEEEEEEeCCccccc
Q 004576 311 -FVI------TPSN-QGKQSIVKHMLAVDWKYWKLY 338 (744)
Q Consensus 311 -wvI------~Pl~-~~~~c~VTyi~qvDpkGwiP~ 338 (744)
-.+ +|++ +.-.|++||+.+++||||.|.
T Consensus 543 qt~v~~p~~~q~l~rdd~~ckityvs~vnpggwapa 578 (611)
T KOG1739|consen 543 QTLVSPPEGNQELSRDDILCKITYVSNVNPGGWAPA 578 (611)
T ss_pred ecccCCcccCCcccccceeEEEEEEeeeCCCCcccH
Confidence 111 2221 123799999999999999996
No 30
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=99.45 E-value=9.1e-13 Score=135.86 Aligned_cols=128 Identities=18% Similarity=0.229 Sum_probs=111.4
Q ss_pred CceEEEEEEecCCHHHHHHHHHcCCCCcccccc----ccceeEEEEecCCc--------EEEEEEEeecCCCCCCCCCce
Q 004576 201 HPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDF----CFYRGCVVEHLDGH--------SDVVHKLLYSDWLPWGMQRRD 268 (744)
Q Consensus 201 ~~~~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~----~~~e~~vVE~ID~~--------tdIvY~~~~~~~lp~~vs~RD 268 (744)
+-+=|+.++|...|..+.+.|||. .+|-. .+..+++++.|+.. ..++|..++... ..+++||
T Consensus 59 ~eASR~~glV~m~~~~lVe~lmD~----~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pS--pLVp~Re 132 (229)
T cd08875 59 TEASRACGLVMMNAIKLVEILMDV----NKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPS--PLVPTRE 132 (229)
T ss_pred EEEEeeeEEEecCHHHHHHHHhCh----hhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCc--ccccCCe
Confidence 356789999999999999999984 46665 78888888877643 678888876432 3589999
Q ss_pred EEEEEEEEEcCCCeEEEEEeccCCC-CCCCCCCeEEEEEeceeEEEEeCCCCCceEEEEEEEEeCCcc
Q 004576 269 LLVRRYWRREDDGTYVILYHSVNHK-KCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYW 335 (744)
Q Consensus 269 FV~lR~wrr~~dGsyvI~~~SV~Hp-~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~VTyi~qvDpkGw 335 (744)
|+++||.++.+||+|+|+-.|+++. ..|+.++++|++..+|||+|+|+++| .|+|||+-|+|..-|
T Consensus 133 ~~fLRyc~~l~dG~w~VvdvSld~~~~~p~~~~~~r~~~~PSGcLIq~~~nG-~SkVtwVeH~e~d~~ 199 (229)
T cd08875 133 FYFLRYCKQLEDGLWAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQDMPNG-YSKVTWVEHVEVDEK 199 (229)
T ss_pred EEEEEEEEEeCCCeEEEEEEeecccccCCCCCCccEEEEecCcEEEEECCCC-ceEEEEEEEEeccCC
Confidence 9999999999999999999999987 67888999999999999999999877 799999999998887
No 31
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=99.29 E-value=3.5e-11 Score=123.28 Aligned_cols=131 Identities=12% Similarity=0.013 Sum_probs=96.6
Q ss_pred Cccccccccc--eeEEEEecCCcE----EEEEEEeecCCCCCCCCCceEEEEEE-EEEcC-CCeEEEEEeccCCCCCC-C
Q 004576 227 SRSEWDFCFY--RGCVVEHLDGHS----DVVHKLLYSDWLPWGMQRRDLLVRRY-WRRED-DGTYVILYHSVNHKKCP-K 297 (744)
Q Consensus 227 ~R~eWD~~~~--e~~vVE~ID~~t----dIvY~~~~~~~lp~~vs~RDFV~lR~-wrr~~-dGsyvI~~~SV~Hp~~P-p 297 (744)
.-.+|...+. ++++|+..++.. .|+|+.++ +|||+++|||+.+.. ....+ ...++++..++.|+.+| +
T Consensus 64 ~E~~~i~~v~~~~~~~l~~~~~~~~~~~~v~~~~~~---~P~Pl~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~ 140 (208)
T cd08864 64 YEKEYVHEIGAYDLEPVEVDGEGDGVVTYLVQLTYK---FPFPLSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESL 140 (208)
T ss_pred hhhhchhhhccceeEEeeecCCCccceEEEEEEEEE---CCCCCCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCcc
Confidence 3569999999 899999988666 77887764 588999999999977 33222 14688999999999999 8
Q ss_pred CCCeEEEEEece-eEEEEeCCCCCceEEEEEE--EEeCCcccccccccchhhHHHHHHHHHHHHHHHH
Q 004576 298 QKGYVRACLKSG-GFVITPSNQGKQSIVKHML--AVDWKYWKLYLRPSSARSITIRMLERVAALRELF 362 (744)
Q Consensus 298 ~~G~VRa~i~~s-GwvI~Pl~~~~~c~VTyi~--qvDpkGwiP~~~~~~~~~~~~~mL~~va~LRe~~ 362 (744)
.+|||||.-..+ .|.+.|...+..+.|+|++ +.||||++|.|+.+. .+|-++..-+..+-+|+
T Consensus 141 ~~~~Vr~~y~SgE~~~~~p~~~~~~~~vew~maT~sDpGG~IP~wl~n~--~~p~aI~~Dv~~fl~W~ 206 (208)
T cd08864 141 YENAVLGRYASVEKISYLPDADGKSNKVEWIMATRSDAGGNIPRWLTKL--TIPKAIAKDVPLFLDWI 206 (208)
T ss_pred CCCcEEEEEEEEEEEEEcCccCCCcCCEEEEEEEeeCCCCcCcHHHHhc--cCchHHHHhHHHHHHHh
Confidence 999999995544 4555676412246777777 999999999995533 34444444555555554
No 32
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.77 E-value=5.7e-08 Score=84.98 Aligned_cols=91 Identities=27% Similarity=0.442 Sum_probs=65.8
Q ss_pred eeeEEEEEeecccccccccceeeEeeceeeeeeecCCCCCCCcceeeeeeccceEEecCccceeeCcEEEEEEEecCCCC
Q 004576 10 IEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSLDH 89 (744)
Q Consensus 10 ~~gWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~~~ 89 (744)
|||||...+.. + ..-+.|||||.+..|.|||...... ..|.....|..+...++.+. =++|.|..+.
T Consensus 1 ~~G~L~k~~~~-~--~~W~~r~~vl~~~~L~~~~~~~~~~-~~~~~~i~l~~~~~~~~~~~-------~~~F~i~~~~-- 67 (91)
T cd01246 1 VEGWLLKWTNY-L--KGWQKRWFVLDNGLLSYYKNKSSMR-GKPRGTILLSGAVISEDDSD-------DKCFTIDTGG-- 67 (91)
T ss_pred CeEEEEEeccc-C--CCceeeEEEEECCEEEEEecCccCC-CCceEEEEeceEEEEECCCC-------CcEEEEEcCC--
Confidence 79999997653 2 3459999999999999999655332 35666666665432333322 2577776543
Q ss_pred cceEEEecCCHHHHHHHHHHHHHH
Q 004576 90 NEKLKLGARSPEEAAKWIRSLQEA 113 (744)
Q Consensus 90 ~~~~~~~~~~~eea~~w~~~~~~a 113 (744)
.+.+.|.|.|.+|+.+|+.||+.|
T Consensus 68 ~~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 68 DKTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhC
Confidence 378899999999999999998875
No 33
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=98.68 E-value=2.3e-07 Score=79.75 Aligned_cols=100 Identities=26% Similarity=0.372 Sum_probs=76.5
Q ss_pred eeeeEEEEEeecccccccccceeeEeeceeeeeeecCCCCCCCcceeeeeeccceEEecCccceeeCcEEEEEEEecCCC
Q 004576 9 KIEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSLD 88 (744)
Q Consensus 9 ~~~gWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~~ 88 (744)
.++|||.+...+ +....+.||++|.++.+.+|+..+...+..|.....|+.. +|........ +..-+.|.+.++..
T Consensus 2 ~~~G~l~~~~~~--~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~-~~~~~~f~l~~~~~ 77 (102)
T smart00233 2 IKEGWLYKKSGG--KKKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGI-TVREAPDPDS-AKKPHCFEIKTADR 77 (102)
T ss_pred ceeEEEEEeCCC--ccCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcC-EEEeCCCCcc-CCCceEEEEEecCC
Confidence 389999997765 6677899999999999999998877654677777777765 6664333221 22235777776554
Q ss_pred CcceEEEecCCHHHHHHHHHHHHHHH
Q 004576 89 HNEKLKLGARSPEEAAKWIRSLQEAA 114 (744)
Q Consensus 89 ~~~~~~~~~~~~eea~~w~~~~~~a~ 114 (744)
.++.|.|.|.+|+.+|+.+|+.++
T Consensus 78 --~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 78 --RSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred --ceEEEEcCCHHHHHHHHHHHHHhh
Confidence 688999999999999999998875
No 34
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=98.62 E-value=2e-07 Score=81.73 Aligned_cols=100 Identities=28% Similarity=0.429 Sum_probs=71.8
Q ss_pred eeeeEEEEEeecccccccccceeeEeeceeeeeeecCCCCCCCcceeeeeeccceEEecCccc--eeeCcEEEEEEEecC
Q 004576 9 KIEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGRE--SINRKVLFVFTLYNS 86 (744)
Q Consensus 9 ~~~gWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~--~~~~~~~~v~~~yn~ 86 (744)
.++|||+..+ .....+ ++|||||.+..|.+||.........|....-++.. .|.+.... ......=++|.|.++
T Consensus 2 ~~~G~L~~~~--~~~~~w-k~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~ 77 (104)
T PF00169_consen 2 IKEGWLLKKS--SSRKKW-KKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTP 77 (104)
T ss_dssp EEEEEEEEEE--SSSSSE-EEEEEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEET
T ss_pred EEEEEEEEEC--CCCCCe-EEEEEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeC
Confidence 5899999977 444444 99999999999999996664333566666666555 66642221 122233455666666
Q ss_pred CCCcceEEEecCCHHHHHHHHHHHHHHH
Q 004576 87 LDHNEKLKLGARSPEEAAKWIRSLQEAA 114 (744)
Q Consensus 87 ~~~~~~~~~~~~~~eea~~w~~~~~~a~ 114 (744)
.. ..+.|.|.|.+|..+|+.+|+.|+
T Consensus 78 ~~--~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 78 NG--KSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp TS--EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CC--cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 65 788999999999999999999885
No 35
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=98.59 E-value=4.9e-07 Score=85.39 Aligned_cols=134 Identities=14% Similarity=0.078 Sum_probs=94.5
Q ss_pred EEEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEecCCcEEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEE
Q 004576 205 MAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYV 284 (744)
Q Consensus 205 Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~~dGsyv 284 (744)
+.+..|++|+++|+++|.|.+. .++|.+.+.++++++.-+.. ..++.... ++...|+|+....+. .+..
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~~~-~~~~~p~~~~~~vl~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~-- 70 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADVER-YPEFLPWCTASRVLERDEDE-LEAELTVG-----FGGIRESFTSRVTLV--PPES-- 70 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHHHh-hhhhcCCccccEEEEcCCCE-EEEEEEEe-----eccccEEEEEEEEec--CCCE--
Confidence 4567889999999999999984 99999999999999976643 45555432 234578887654443 2332
Q ss_pred EEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceEEEEEEEEeCCccccccc-ccchhhHHHHHHHHHHHHHHHHH
Q 004576 285 ILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYLR-PSSARSITIRMLERVAALRELFQ 363 (744)
Q Consensus 285 I~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~VTyi~qvDpkGwiP~~~-~~~~~~~~~~mL~~va~LRe~~~ 363 (744)
|...++.. +.....|.|.++|++++ +|+|+|.++.+++|.+|.|+ +.+....+.++| .+|++.+.
T Consensus 71 i~~~~~~g----------~~~~~~g~w~~~p~~~~-~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l---~~f~~~~~ 136 (138)
T cd07813 71 IEAELVDG----------PFKHLEGEWRFKPLGEN-ACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMV---DAFEKRAK 136 (138)
T ss_pred EEEEecCC----------ChhhceeEEEEEECCCC-CEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHH---HHHHHHHh
Confidence 35555543 22234679999999765 69999999999999999884 344455554444 56665544
No 36
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=98.57 E-value=3.2e-07 Score=83.97 Aligned_cols=100 Identities=18% Similarity=0.231 Sum_probs=65.7
Q ss_pred eeeEEEEEeecccccccccceeeEeeceeeeeeecCCCC--CCCcceeeeeeccceEEecCccceeeCcEEEEEEEecCC
Q 004576 10 IEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSS--EKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSL 87 (744)
Q Consensus 10 ~~gWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~--~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~ 87 (744)
.||||..-|... ...+ ++|||||.+..|.|||..... .|..++.+.. .++.|.+.-.....+...|.|.|..+
T Consensus 1 KeG~L~K~g~~~-~k~w-kkRwFvL~~~~L~Yyk~~~d~~~~G~I~L~~~~--~~~~v~~~~~~~~~~~~~~~F~i~t~- 75 (103)
T cd01251 1 KEGFMEKTGPKH-TEGF-KKRWFTLDDRRLMYFKDPLDAFAKGEVFLGSQE--DGYEVREGLPPGTQGNHWYGVTLVTP- 75 (103)
T ss_pred CceeEEecCCCC-CCCc-eeEEEEEeCCEEEEECCCCCcCcCcEEEeeccc--cceeEeccCCccccccccceEEEEeC-
Confidence 489999866532 2344 999999999999999953322 2233333211 23445421000011223458888775
Q ss_pred CCcceEEEecCCHHHHHHHHHHHHHHHHh
Q 004576 88 DHNEKLKLGARSPEEAAKWIRSLQEAAVK 116 (744)
Q Consensus 88 ~~~~~~~~~~~~~eea~~w~~~~~~a~~~ 116 (744)
.+++.|.|.|.+|...|++||+.|+.+
T Consensus 76 --~Rty~l~a~s~~e~~~Wi~ai~~v~~~ 102 (103)
T cd01251 76 --ERKFLFACETEQDRREWIAAFQNVLSR 102 (103)
T ss_pred --CeEEEEECCCHHHHHHHHHHHHHHhcC
Confidence 788999999999999999999999763
No 37
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.40 E-value=8.3e-06 Score=77.14 Aligned_cols=142 Identities=12% Similarity=0.117 Sum_probs=84.1
Q ss_pred EEEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEecCCcEEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEE
Q 004576 205 MAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYV 284 (744)
Q Consensus 205 Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~~dGsyv 284 (744)
+++..|++||+.|+++|.|.+. .++|.+.+.++++++.-++. ..+++......+.... +.-+.++... ..+....
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~-~~~w~p~v~~~~~l~~~~~~-~~~~~~~~~~~~~~~~--~~~v~~~~~~-~~~~~~~ 76 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDN-LAEFIPNLAESRLLERNGNR-VVLEQTGKQGILFFKF--EARVVLELRE-REEFPRE 76 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhh-HHhhCcCceEEEEEEcCCCE-EEEEEeeeEEEEeeee--eEEEEEEEEE-ecCCCce
Confidence 5788999999999999999984 89999999999999874443 3344321100000000 0111111111 1110011
Q ss_pred EEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceEEEEEEEEeCCcccccccccchhhHHHHHHHHHHHHHHHHH
Q 004576 285 ILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYLRPSSARSITIRMLERVAALRELFQ 363 (744)
Q Consensus 285 I~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~VTyi~qvDpkGwiP~~~~~~~~~~~~~mL~~va~LRe~~~ 363 (744)
+..+.+. |-+ ....+.|.++|.+++.+|+|+|.+++++++.+|.|+.+. .+--.+...+++||+.++
T Consensus 77 i~~~~~~--------g~~--~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~~p~~l~~~--~~~~~~~~~l~~lr~~ae 143 (144)
T cd08866 77 LDFEMVE--------GDF--KRFEGSWRLEPLADGGGTLLTYEVEVKPDFFAPVFLVEF--VLRQDLPTNLLAIRAEAE 143 (144)
T ss_pred EEEEEcC--------Cch--hceEEEEEEEECCCCCeEEEEEEEEEEeCCCCCHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 2222221 101 234678999999763379999999999999999873322 122223455688887654
No 38
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=98.39 E-value=2.2e-06 Score=76.78 Aligned_cols=93 Identities=17% Similarity=0.429 Sum_probs=63.3
Q ss_pred eeeEEEEEee-cc-cccccccceeeEeeceeeeeeecCCCCCCCcceeeeeeccceEEecCccceeeCcEEEEEEEecCC
Q 004576 10 IEGWLYAILV-NR-IGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSL 87 (744)
Q Consensus 10 ~~gWm~~~~~-~~-lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~ 87 (744)
++|||++-+. .+ ....+ ++|||||.++.|.|||..... .|.....+++ +.|+.. .+. ..-++|.|-++.
T Consensus 2 ~~GwL~kk~~~~g~~~k~W-kkrwfvL~~~~L~yyk~~~~~---~~~~~I~L~~-~~v~~~-~~~---~k~~~F~I~~~~ 72 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKW-ARRWFVLKGTTLYWYRSKQDE---KAEGLIFLSG-FTIESA-KEV---KKKYAFKVCHPV 72 (96)
T ss_pred ceeEEEEecCCCCccccCc-eeEEEEEECCEEEEECCCCCC---ccceEEEccC-CEEEEc-hhc---CCceEEEECCCC
Confidence 7999999543 22 34467 999999999999999955433 4444333444 344421 011 123678886432
Q ss_pred CCcceEEEecCCHHHHHHHHHHHHHH
Q 004576 88 DHNEKLKLGARSPEEAAKWIRSLQEA 113 (744)
Q Consensus 88 ~~~~~~~~~~~~~eea~~w~~~~~~a 113 (744)
.+.+-|.|.|.||+.+|++||++|
T Consensus 73 --~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 73 --YKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred --CcEEEEEeCCHHHHHHHHHHHHhC
Confidence 377899999999999999988765
No 39
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=98.35 E-value=1.2e-06 Score=80.63 Aligned_cols=95 Identities=18% Similarity=0.220 Sum_probs=64.8
Q ss_pred eeeEEEEEe--ecccccccccceeeEeeceeeeeeecCCCC----CCCcceeeeeeccceEEecCccce---eeCcEEEE
Q 004576 10 IEGWLYAIL--VNRIGMQISRKRYFILLDNCLNGYKMVPSS----EKEEPVKSAMIHSCIRVTDNGRES---INRKVLFV 80 (744)
Q Consensus 10 ~~gWm~~~~--~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~----~~~~pi~~~ii~~~~rVed~Gr~~---~~~~~~~v 80 (744)
-||||+.-+ ..++|+.--+.|||||.+..|.|||..+.. .|..||.++ .-|+...-+. .+...-|.
T Consensus 2 k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~~~~kG~I~L~~~-----~~ve~~~~~~~~~~~~~~~~~ 76 (106)
T cd01238 2 LESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKRGSKKGSIDLSKI-----KCVETVKPEKNPPIPERFKYP 76 (106)
T ss_pred cceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCcccccCcceeEECCcc-----eEEEEecCCcCcccccccCcc
Confidence 489999975 566888677999999999999999966542 234444442 3344211111 11112367
Q ss_pred EEEecCCCCcceEEEecCCHHHHHHHHHHHHH
Q 004576 81 FTLYNSLDHNEKLKLGARSPEEAAKWIRSLQE 112 (744)
Q Consensus 81 ~~~yn~~~~~~~~~~~~~~~eea~~w~~~~~~ 112 (744)
|.|.-. .+++-|.|.|.+|...|++||++
T Consensus 77 F~i~t~---~r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 77 FQVVHD---EGTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred EEEEeC---CCeEEEEcCCHHHHHHHHHHHHh
Confidence 888663 45788889999999999997764
No 40
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=98.33 E-value=3.2e-06 Score=76.84 Aligned_cols=94 Identities=14% Similarity=0.186 Sum_probs=66.7
Q ss_pred eeeEEEEEeecccccccccceeeEeeceeeeeeecCCCCCCCcceeeeeeccceEEe-cCccceeeCcEEEEEEEecCCC
Q 004576 10 IEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVT-DNGRESINRKVLFVFTLYNSLD 88 (744)
Q Consensus 10 ~~gWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVe-d~Gr~~~~~~~~~v~~~yn~~~ 88 (744)
.+|||..-|.+. ..+ ++|||||++..|.|||.+.. ..|+...-++ +|.|+ +.+..+..++. ++|.|..
T Consensus 4 k~G~L~Kkg~~~--k~W-kkRwfvL~~~~L~yyk~~~~---~~~~~~I~L~-~~~v~~~~~~~~~~~~~-~~F~I~t--- 72 (100)
T cd01233 4 KKGYLNFPEETN--SGW-TRRFVVVRRPYLHIYRSDKD---PVERGVINLS-TARVEHSEDQAAMVKGP-NTFAVCT--- 72 (100)
T ss_pred eeEEEEeeCCCC--CCc-EEEEEEEECCEEEEEccCCC---ccEeeEEEec-ccEEEEccchhhhcCCC-cEEEEEC---
Confidence 689999976643 455 99999999999999997543 3555555555 66665 23332222222 4677753
Q ss_pred CcceEEEecCCHHHHHHHHHHHHHHH
Q 004576 89 HNEKLKLGARSPEEAAKWIRSLQEAA 114 (744)
Q Consensus 89 ~~~~~~~~~~~~eea~~w~~~~~~a~ 114 (744)
.++++.|.|.|.+|...|+.||+..+
T Consensus 73 ~~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 73 KHRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred CCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 46789999999999999999887654
No 41
>PF11274 DUF3074: Protein of unknown function (DUF3074)
Probab=98.27 E-value=1.9e-05 Score=79.77 Aligned_cols=139 Identities=14% Similarity=0.046 Sum_probs=95.3
Q ss_pred cCCHHHHHHHHHcCC-CCccccccccceeEEEEec----------CCcEEEEEEEeecCCCCCCCCCceEEEEEEEEEcC
Q 004576 211 DGTSEAIFQTLMSLG-SSRSEWDFCFYRGCVVEHL----------DGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRRED 279 (744)
Q Consensus 211 ~aspe~Vf~~L~d~~-~~R~eWD~~~~e~~vVE~I----------D~~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~~ 279 (744)
.++-++.-..|.+.- ++-.++.+.+...+.++.. +....|++..++ +|+|.++|||+.|-......
T Consensus 13 ~~~~~~~~~~L~~~h~e~E~~yi~~i~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~k---fp~pl~~R~F~~Lvit~~~~ 89 (184)
T PF11274_consen 13 GASFDEFRKGLKDEHSENEKEYIPGIGSVERLERWDVDDGGGGWGDGTMEVWQLSYK---FPGPLSPRVFVVLVITADLP 89 (184)
T ss_pred CCCHHHHHHHHHhhhHHHHHHhccccceEEEEEEeccccCCcccccceEEEEEEEeE---CCCCCCCcEEEEEEEEeccC
Confidence 567777777776531 1345778899999999988 455555555433 57899999999996654433
Q ss_pred ---------CCeEEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeC------CCCCceEEEEEEEEeCCcccccccccch
Q 004576 280 ---------DGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPS------NQGKQSIVKHMLAVDWKYWKLYLRPSSA 344 (744)
Q Consensus 280 ---------dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl------~~~~~c~VTyi~qvDpkGwiP~~~~~~~ 344 (744)
...++|+...++|+.+|+.+|+|||.=. |-=.|+-+ ++...-.=++.+..|+||++|.|+...
T Consensus 90 ~~~~~~~~~~~~f~vVs~P~~~~~~~~~~~~V~g~Y~-SVE~ire~p~~~~~~~~~~veW~MaT~SdaGG~IP~w~q~~- 167 (184)
T PF11274_consen 90 SKTEDDSTGPREFMVVSIPVDHPDSPPRKGYVRGQYE-SVERIRELPDTKDDDEEGPVEWIMATRSDAGGSIPRWMQEM- 167 (184)
T ss_pred ccccCCCCCCCeEEEEEEEcCCcccCCCCCCEEEEEE-EEEEEEEccCCCCCCCCCcEEEEEEEeeCCCCcccHHHHhc-
Confidence 2479999999999999999999999543 33334444 223345556667889999999995433
Q ss_pred hhHHHHHHHHH
Q 004576 345 RSITIRMLERV 355 (744)
Q Consensus 345 ~~~~~~mL~~v 355 (744)
.+|.++..-+
T Consensus 168 -~~p~~Ia~DV 177 (184)
T PF11274_consen 168 -GTPGAIAKDV 177 (184)
T ss_pred -cCcHHHHHHH
Confidence 4444333333
No 42
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.26 E-value=6.6e-06 Score=70.57 Aligned_cols=97 Identities=27% Similarity=0.348 Sum_probs=69.5
Q ss_pred eeeEEEEEeeccc-ccccccceeeEeeceeeeeeecCCCCCCCcceeeeeec-cceEEecCccceeeCcEEEEEEEecCC
Q 004576 10 IEGWLYAILVNRI-GMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIH-SCIRVTDNGRESINRKVLFVFTLYNSL 87 (744)
Q Consensus 10 ~~gWm~~~~~~~l-g~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~-~~~rVed~Gr~~~~~~~~~v~~~yn~~ 87 (744)
.+|||...+...+ +....++|||+|.++.|.+|+.++...... .++. .+++|+...... +.-++|.+.+..
T Consensus 1 ~~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~----~~~~l~~~~v~~~~~~~---~~~~~F~i~~~~ 73 (99)
T cd00900 1 KEGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKP----GSIPLSEISVEEDPDGS---DDPNCFAIVTKD 73 (99)
T ss_pred CccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCC----CEEEccceEEEECCCCC---CCCceEEEECCC
Confidence 3799999877655 667779999999999999999776553221 1221 233355432221 234688888876
Q ss_pred CCcceEEEecCCHHHHHHHHHHHHHH
Q 004576 88 DHNEKLKLGARSPEEAAKWIRSLQEA 113 (744)
Q Consensus 88 ~~~~~~~~~~~~~eea~~w~~~~~~a 113 (744)
.....+.|.|.|.+|+..|++||++|
T Consensus 74 ~~~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 74 RGRRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred CCcEEEEEEcCCHHHHHHHHHHHhcC
Confidence 55778899999999999999988864
No 43
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=98.24 E-value=9.2e-06 Score=74.45 Aligned_cols=90 Identities=21% Similarity=0.431 Sum_probs=67.4
Q ss_pred eeeeEEEEEeecccccccccceeeEeece------eeeeeecCCCCC--CCcceeeeeeccceEEecCccceeeCcEEEE
Q 004576 9 KIEGWLYAILVNRIGMQISRKRYFILLDN------CLNGYKMVPSSE--KEEPVKSAMIHSCIRVTDNGRESINRKVLFV 80 (744)
Q Consensus 9 ~~~gWm~~~~~~~lg~~~~~~ry~vl~~~------~~~~yKr~P~~~--~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v 80 (744)
+++|||... .+-++|||||++. .|.|||...... +..|.+..-++.+.-|...-.. .++ |+
T Consensus 3 ~k~GyL~K~-------K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d~--k~~--~~ 71 (101)
T cd01257 3 RKSGYLRKQ-------KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRADA--KHR--HL 71 (101)
T ss_pred cEEEEEeEe-------cCcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeecccc--ccC--eE
Confidence 489999984 4558899999998 799999665432 2568777777788777642211 222 67
Q ss_pred EEEecCCCCcceEEEecCCHHHHHHHHHHHHH
Q 004576 81 FTLYNSLDHNEKLKLGARSPEEAAKWIRSLQE 112 (744)
Q Consensus 81 ~~~yn~~~~~~~~~~~~~~~eea~~w~~~~~~ 112 (744)
|.|+. +++.+-|+|.|.+|...|+++|.+
T Consensus 72 f~i~t---~dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 72 IALYT---RDEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEEEe---CCceEEEEeCCHHHHHHHHHHHhh
Confidence 88877 346899999999999999997754
No 44
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.24 E-value=6.4e-06 Score=72.40 Aligned_cols=93 Identities=25% Similarity=0.382 Sum_probs=61.4
Q ss_pred eeeEEEEEeecccccccccceeeEeeceeeeeeecCCCCCCCcceeeeeecc-ceEEecCccceeeCcEEEEEEEecCCC
Q 004576 10 IEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHS-CIRVTDNGRESINRKVLFVFTLYNSLD 88 (744)
Q Consensus 10 ~~gWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~-~~rVed~Gr~~~~~~~~~v~~~yn~~~ 88 (744)
|+|||..=+... ...-++|||||.+..+.||+..+.. ...|. +.|+. .+.|+...... +.-++|.|....
T Consensus 1 k~G~L~kk~~~~--~~~W~kr~~~L~~~~l~~y~~~~~~-~~~~~--~~i~l~~~~v~~~~~~~---~~~~~f~i~~~~- 71 (94)
T cd01250 1 KQGYLYKRSSKS--NKEWKKRWFVLKNGQLTYHHRLKDY-DNAHV--KEIDLRRCTVRHNGKQP---DRRFCFEVISPT- 71 (94)
T ss_pred CcceEEEECCCc--CCCceEEEEEEeCCeEEEEcCCccc-ccccc--eEEeccceEEecCcccc---CCceEEEEEcCC-
Confidence 689999833222 3334999999999999999976643 12333 23432 24454221111 123678887544
Q ss_pred CcceEEEecCCHHHHHHHHHHHHHH
Q 004576 89 HNEKLKLGARSPEEAAKWIRSLQEA 113 (744)
Q Consensus 89 ~~~~~~~~~~~~eea~~w~~~~~~a 113 (744)
+.+.|.|.|.+|+.+|+.||+++
T Consensus 72 --~~~~f~a~s~~~~~~Wi~al~~~ 94 (94)
T cd01250 72 --KTWHFQADSEEERDDWISAIQES 94 (94)
T ss_pred --cEEEEECCCHHHHHHHHHHHhcC
Confidence 77899999999999999988753
No 45
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=98.24 E-value=8.5e-06 Score=73.25 Aligned_cols=93 Identities=20% Similarity=0.262 Sum_probs=62.1
Q ss_pred eeeEEEEEeecccccccccceeeEeec--eeeeeeecCCCCCCCcceeeeeec--cceEEec----CccceeeCcEEEEE
Q 004576 10 IEGWLYAILVNRIGMQISRKRYFILLD--NCLNGYKMVPSSEKEEPVKSAMIH--SCIRVTD----NGRESINRKVLFVF 81 (744)
Q Consensus 10 ~~gWm~~~~~~~lg~~~~~~ry~vl~~--~~~~~yKr~P~~~~~~pi~~~ii~--~~~rVed----~Gr~~~~~~~~~v~ 81 (744)
++|||..-|. .-..+ .+|||||.+ ..|.|||... + ..|. |.|+ ..+.|+. .|...+.... +.|
T Consensus 1 ~~G~L~K~g~--~~k~W-kkRwFvL~~~~~~L~Yy~~~~-~--~~~~--g~I~L~~~~~v~~~~~~~~~~~~~~~~-~~f 71 (101)
T cd01235 1 CEGYLYKRGA--LLKGW-KPRWFVLDPDKHQLRYYDDFE-D--TAEK--GCIDLAEVKSVNLAQPGMGAPKHTSRK-GFF 71 (101)
T ss_pred CeEEEEEcCC--CCCCc-cceEEEEECCCCEEEEecCCC-C--Cccc--eEEEcceeEEEeecCCCCCCCCCCCCc-eEE
Confidence 5899999664 44566 999999995 4899999443 2 2443 4443 4445542 2223333232 446
Q ss_pred EEecCCCCcceEEEecCCHHHHHHHHHHHHHHH
Q 004576 82 TLYNSLDHNEKLKLGARSPEEAAKWIRSLQEAA 114 (744)
Q Consensus 82 ~~yn~~~~~~~~~~~~~~~eea~~w~~~~~~a~ 114 (744)
.+.. +.+.+.|.|.|.+|+..|+.||+++|
T Consensus 72 ~i~t---~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 72 DLKT---SKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred EEEe---CCceEEEECCCHHHHHHHHHHHHhhC
Confidence 6532 45778999999999999999998764
No 46
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.21 E-value=1.2e-05 Score=75.79 Aligned_cols=96 Identities=26% Similarity=0.524 Sum_probs=65.5
Q ss_pred eeeEEEEEeecccccccccceeeEeeceeeeeeecCCCCCCCcceeeeeeccceEEecCccceeeCcEEEEEEEecCCC-
Q 004576 10 IEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSLD- 88 (744)
Q Consensus 10 ~~gWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~~- 88 (744)
.+|||..-|.. + ..+ ++|||||.++.|.|||. +.+ ..|.....++ ++.|+..-. .++ =++|.|+...+
T Consensus 2 k~G~L~K~~~~-~-~~W-kkRwfvL~~~~L~yyk~-~~~--~~~~g~I~L~-~~~v~~~~~---~~~-~~~F~i~~~~~~ 70 (125)
T cd01252 2 REGWLLKQGGR-V-KTW-KRRWFILTDNCLYYFEY-TTD--KEPRGIIPLE-NVSIREVED---PSK-PFCFELFSPSDK 70 (125)
T ss_pred cEEEEEEeCCC-C-CCe-EeEEEEEECCEEEEEcC-CCC--CCceEEEECC-CcEEEEccc---CCC-CeeEEEECCccc
Confidence 58999986643 2 445 99999999999999983 222 3454444444 455553110 112 25677777665
Q ss_pred -----------------CcceEEEecCCHHHHHHHHHHHHHHHHh
Q 004576 89 -----------------HNEKLKLGARSPEEAAKWIRSLQEAAVK 116 (744)
Q Consensus 89 -----------------~~~~~~~~~~~~eea~~w~~~~~~a~~~ 116 (744)
....+.+.|.|.+|...|+.||+.++..
T Consensus 71 ~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~ 115 (125)
T cd01252 71 QQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISP 115 (125)
T ss_pred cccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 1244579999999999999999999874
No 47
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=98.19 E-value=1.4e-05 Score=71.63 Aligned_cols=88 Identities=18% Similarity=0.179 Sum_probs=57.6
Q ss_pred eeeEEEEEeecccccccccceeeEeeceeeeeeecCCCCCCCcceeeeeec-cceEEe-cCccceeeCcEEEEEEEecCC
Q 004576 10 IEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIH-SCIRVT-DNGRESINRKVLFVFTLYNSL 87 (744)
Q Consensus 10 ~~gWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~-~~~rVe-d~Gr~~~~~~~~~v~~~yn~~ 87 (744)
++|||..-|. +-..+ +.|||||++..|.|||.++... ..| .|.|+ .+|.+. +... . ..|.|..
T Consensus 1 ~~G~L~K~~~--~~k~W-k~RwFvL~~g~L~Yyk~~~~~~-~~~--~G~I~L~~~~i~~~~~~-----~--~~F~i~~-- 65 (91)
T cd01247 1 TNGVLSKWTN--YINGW-QDRYFVLKEGNLSYYKSEAEKS-HGC--RGSIFLKKAIIAAHEFD-----E--NRFDISV-- 65 (91)
T ss_pred CceEEEEecc--ccCCC-ceEEEEEECCEEEEEecCccCc-CCC--cEEEECcccEEEcCCCC-----C--CEEEEEe--
Confidence 5799999663 44566 9999999999999999766532 112 24443 122222 1111 1 2344432
Q ss_pred CCcceEEEecCCHHHHHHHHHHHHH
Q 004576 88 DHNEKLKLGARSPEEAAKWIRSLQE 112 (744)
Q Consensus 88 ~~~~~~~~~~~~~eea~~w~~~~~~ 112 (744)
...+++.|.|.|++|..+|++||+.
T Consensus 66 ~~~r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 66 NENVVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred CCCeEEEEEeCCHHHHHHHHHHHhh
Confidence 2247889999999999999997763
No 48
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=98.17 E-value=4.4e-06 Score=77.76 Aligned_cols=95 Identities=31% Similarity=0.506 Sum_probs=57.1
Q ss_pred eeeEEEEEeecccccccccceeeEee-ceeeeeeecCCCCC---------CCcceeeeeeccceE---Eec----Cccce
Q 004576 10 IEGWLYAILVNRIGMQISRKRYFILL-DNCLNGYKMVPSSE---------KEEPVKSAMIHSCIR---VTD----NGRES 72 (744)
Q Consensus 10 ~~gWm~~~~~~~lg~~~~~~ry~vl~-~~~~~~yKr~P~~~---------~~~pi~~~ii~~~~r---Ved----~Gr~~ 72 (744)
+|||||.-+ |++|..| +.|||||+ +..|.|||- |.+. ...-++++-++...+ +.. +-++.
T Consensus 1 k~G~l~K~~-~~~~kgW-k~RwFiL~k~~~L~YyK~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (112)
T PF15413_consen 1 KEGYLYKWG-NKFGKGW-KKRWFILRKDGVLSYYKI-PRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGE 77 (112)
T ss_dssp EEEEEEE---TTS-S---EEEEEEEE-TTEEEEESS--------------TT-SB-SEEEE---GGGT-EEEES-T--SS
T ss_pred CCceEEEec-CCCCcCc-cccEEEEEeCCEEEEeec-ccccccccccccchhceEeecccCcccccccccccccCCcccC
Confidence 689999854 4489999 99999999 999999996 2221 012222222221111 111 44566
Q ss_pred eeCcEEEEEEEecCCCCcceEEEecCCHHHHHHHHHHHHHH
Q 004576 73 INRKVLFVFTLYNSLDHNEKLKLGARSPEEAAKWIRSLQEA 113 (744)
Q Consensus 73 ~~~~~~~v~~~yn~~~~~~~~~~~~~~~eea~~w~~~~~~a 113 (744)
+|...++| ...++++-|.|.|.+|-..|++||++|
T Consensus 78 ~~~~~~~i------~T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 78 IHLKVFSI------FTPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp -SSEEEEE------E-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred cCCCCcEE------ECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 77777777 346889999999999999999999876
No 49
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.15 E-value=1.4e-05 Score=72.19 Aligned_cols=91 Identities=25% Similarity=0.302 Sum_probs=60.8
Q ss_pred eeeEEEEEeecccccccccceeeEeec--eeeeeeecCCCCCCCcceeeeeeccceEEecCccceeeCcEEEEEEEecCC
Q 004576 10 IEGWLYAILVNRIGMQISRKRYFILLD--NCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSL 87 (744)
Q Consensus 10 ~~gWm~~~~~~~lg~~~~~~ry~vl~~--~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~ 87 (744)
+.|||...|.......+ ++|||||++ ..|.|||... + ..|+-..-+...+-+.+...+ . +.|.|..
T Consensus 1 l~GyL~K~g~~~~~K~W-kkRWFvL~~~~~~L~Yyk~~~-d--~~p~G~I~L~~~~~~~~~~~~---~---~~F~i~t-- 68 (95)
T cd01265 1 LCGYLHKIEGKGPLRGR-RSRWFALDDRTCYLYYYKDSQ-D--AKPLGRVDLSGAAFTYDPREE---K---GRFEIHS-- 68 (95)
T ss_pred CcccEEEecCCCCCcCc-eeEEEEEcCCCcEEEEECCCC-c--ccccceEECCccEEEcCCCCC---C---CEEEEEc--
Confidence 36999999876566777 999999984 4799998433 2 234333333332222222111 1 2466654
Q ss_pred CCcceEEEecCCHHHHHHHHHHHHHH
Q 004576 88 DHNEKLKLGARSPEEAAKWIRSLQEA 113 (744)
Q Consensus 88 ~~~~~~~~~~~~~eea~~w~~~~~~a 113 (744)
.++.+.|.|.|++|..+|++||+.+
T Consensus 69 -~~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 69 -NNEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred -CCcEEEEECCCHHHHHHHHHHHHhh
Confidence 3577899999999999999988876
No 50
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.14 E-value=2.9e-05 Score=70.88 Aligned_cols=98 Identities=19% Similarity=0.228 Sum_probs=68.4
Q ss_pred eeeeEEEEEeecccccccccceeeEeeceeeeeeecCCCCCCCcceeeeeec-cceEEecCccceeeCcEEEEEEEecCC
Q 004576 9 KIEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIH-SCIRVTDNGRESINRKVLFVFTLYNSL 87 (744)
Q Consensus 9 ~~~gWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~-~~~rVed~Gr~~~~~~~~~v~~~yn~~ 87 (744)
..||||-.+++.. .-++.|||+|-+..|=|+|.+|...+..-...+.|+ .++.|++.- ....-+.|.|.-+
T Consensus 3 ikeG~L~K~~~~~---~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~----~~~~~~~F~I~~~- 74 (101)
T cd01219 3 LKEGSVLKISSTT---EKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEGD----NLERPHSFLVSGK- 74 (101)
T ss_pred ccceEEEEEecCC---CCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeCC----CCCcCceEEEecC-
Confidence 3799998876543 356889999988899999966544333344455555 457777531 1122234555332
Q ss_pred CCcceEEEecCCHHHHHHHHHHHHHHHHh
Q 004576 88 DHNEKLKLGARSPEEAAKWIRSLQEAAVK 116 (744)
Q Consensus 88 ~~~~~~~~~~~~~eea~~w~~~~~~a~~~ 116 (744)
.+.+.+.|.|+||-..|+.||+.||++
T Consensus 75 --~rsf~l~A~s~eEk~~W~~ai~~~i~~ 101 (101)
T cd01219 75 --QRCLELQARTQKEKNDWVQAIFSIIDE 101 (101)
T ss_pred --CcEEEEEcCCHHHHHHHHHHHHHHhhC
Confidence 378899999999999999999999863
No 51
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.10 E-value=9.4e-05 Score=68.98 Aligned_cols=135 Identities=13% Similarity=0.192 Sum_probs=85.2
Q ss_pred eEEEEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEecCCc-EEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCC
Q 004576 203 AIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGH-SDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDG 281 (744)
Q Consensus 203 ~~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~-tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~~dG 281 (744)
.+.....|++||++|+++|.|.+. .++|.+.+.++++++.-++. ....+..... .++.. +|+.-..+ ....
T Consensus 3 ~v~~s~~i~ap~e~V~~~l~D~~~-~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~--~~~~ 74 (140)
T cd07819 3 KVSREFEIEAPPAAVMDVLADVEA-YPEWSPKVKSVEVLLRDNDGRPEMVRIGVGA----YGIKD-TYALEYTW--DGAG 74 (140)
T ss_pred eEEEEEEEeCCHHHHHHHHhChhh-hhhhCcceEEEEEeccCCCCCEEEEEEEEee----eeEEE-EEEEEEEE--cCCC
Confidence 356678899999999999999984 99999999999998754432 2234433221 12222 34322222 2222
Q ss_pred eEEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceEEEEEEEEeCCcccccccccc-hhhHHHHHHHHHHHHHH
Q 004576 282 TYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYLRPSS-ARSITIRMLERVAALRE 360 (744)
Q Consensus 282 syvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~VTyi~qvDpkGwiP~~~~~~-~~~~~~~mL~~va~LRe 360 (744)
.|..+++... +.....+.|.++|.++ +|+|+|..+.+++|.+|.|.... .+.++ .+.+++||+
T Consensus 75 --~i~~~~~~~~---------~~~~~~~~~~~~~~~~--~t~vt~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~ 138 (140)
T cd07819 75 --SVSWTLVEGE---------GNRSQEGSYTLTPKGD--GTRVTFDLTVELTVPLPGFLKRKAEPLVL---DEALKGLKK 138 (140)
T ss_pred --cEEEEEeccc---------ceeEEEEEEEEEECCC--CEEEEEEEEEEecCCCCHHHHHHhhhHHH---HHHHHhHhh
Confidence 2444444321 2223346899999876 59999999999999999874432 23333 344577776
Q ss_pred H
Q 004576 361 L 361 (744)
Q Consensus 361 ~ 361 (744)
+
T Consensus 139 ~ 139 (140)
T cd07819 139 R 139 (140)
T ss_pred h
Confidence 5
No 52
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=97.95 E-value=4.9e-05 Score=70.03 Aligned_cols=95 Identities=25% Similarity=0.264 Sum_probs=62.3
Q ss_pred eeEEEEEeec-ccccccccceeeEeecee-------eeeeecCCCCCCCcceeeeeeccceEEecCccce--eeCcEEEE
Q 004576 11 EGWLYAILVN-RIGMQISRKRYFILLDNC-------LNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGRES--INRKVLFV 80 (744)
Q Consensus 11 ~gWm~~~~~~-~lg~~~~~~ry~vl~~~~-------~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~--~~~~~~~v 80 (744)
||||..-|.. +++..-=++|||||.+.. |.|||..+. ..|....-++...-| +.|... .+...=|+
T Consensus 2 eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~---~k~~g~I~L~~~~~v-~~~~~~~~~~~~~~~~ 77 (108)
T cd01266 2 EGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRK---FKLEFVIDLESCSQV-DPGLLCTAGNCIFGYG 77 (108)
T ss_pred ceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCC---CccceEEECCccEEE-cccccccccCcccceE
Confidence 8999996553 335544499999999876 599995443 255444444453333 333211 11122266
Q ss_pred EEEecCCCCcceEEEecCCHHHHHHHHHHHHH
Q 004576 81 FTLYNSLDHNEKLKLGARSPEEAAKWIRSLQE 112 (744)
Q Consensus 81 ~~~yn~~~~~~~~~~~~~~~eea~~w~~~~~~ 112 (744)
|.+. ...+.+-|.|.|.||...|+.+|.+
T Consensus 78 f~i~---t~~r~y~l~A~s~ee~~~Wi~~I~~ 106 (108)
T cd01266 78 FDIE---TIVRDLYLVAKNEEEMTLWVNCICK 106 (108)
T ss_pred EEEE---eCCccEEEEECCHHHHHHHHHHHHh
Confidence 7776 2467889999999999999998765
No 53
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.93 E-value=4.2e-05 Score=69.79 Aligned_cols=84 Identities=18% Similarity=0.257 Sum_probs=56.8
Q ss_pred cccccccccceeeEeeceeeeeeecCCCCCCCcceeeeeeccceEEecCccceeeCcEEEEEEEecCCCCcceEEEecCC
Q 004576 20 NRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSLDHNEKLKLGARS 99 (744)
Q Consensus 20 ~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~~~~~~~~~~~~~ 99 (744)
.+.+.+| .+|||+|.++.|.|||. |. ..|.-+.-+..-.-||+.+-....+ -|+|.|..+ ++++-|-|.|
T Consensus 15 ~~~~~n~-KkRwF~Lt~~~L~Y~k~-~~---~~~~g~I~L~~i~~ve~v~~~~~~~--~~~fqivt~---~r~~yi~a~s 84 (98)
T cd01244 15 WKKVLHF-KKRYFQLTTTHLSWAKD-VQ---CKKSALIKLAAIKGTEPLSDKSFVN--VDIITIVCE---DDTMQLQFEA 84 (98)
T ss_pred CccCcCC-ceeEEEECCCEEEEECC-CC---CceeeeEEccceEEEEEcCCcccCC--CceEEEEeC---CCeEEEECCC
Confidence 4667555 99999999999999993 32 2333333333333444444332222 278888765 4689999999
Q ss_pred HHHHHHHHHHHHHH
Q 004576 100 PEEAAKWIRSLQEA 113 (744)
Q Consensus 100 ~eea~~w~~~~~~a 113 (744)
.+|...|++||+.+
T Consensus 85 ~~E~~~Wi~al~k~ 98 (98)
T cd01244 85 PVEATDWLNALEKQ 98 (98)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988753
No 54
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.92 E-value=3.7e-05 Score=65.34 Aligned_cols=94 Identities=26% Similarity=0.335 Sum_probs=67.0
Q ss_pred eeeEEEEEeecccccccccceeeEeeceeeeeeecCCCCCCCcceeeeeeccceEEec--CccceeeCcEEEEEEEecCC
Q 004576 10 IEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTD--NGRESINRKVLFVFTLYNSL 87 (744)
Q Consensus 10 ~~gWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed--~Gr~~~~~~~~~v~~~yn~~ 87 (744)
++|||++..... .+.-++||++|.+..+.+|+..+......|.....+.. +.|.. .+. +.-++|.|-+..
T Consensus 1 ~~G~l~~~~~~~--~~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~-~~v~~~~~~~-----~~~~~f~i~~~~ 72 (96)
T cd00821 1 KEGYLLKKTGKL--RKGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSG-AEVEESPDDS-----GRKNCFEIRTPD 72 (96)
T ss_pred CcchhhhhhChh--hCCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCC-CEEEECCCcC-----CCCcEEEEecCC
Confidence 479999866544 45559999999999999999666543345555555554 44442 222 234677777665
Q ss_pred CCcceEEEecCCHHHHHHHHHHHHHH
Q 004576 88 DHNEKLKLGARSPEEAAKWIRSLQEA 113 (744)
Q Consensus 88 ~~~~~~~~~~~~~eea~~w~~~~~~a 113 (744)
+ ..+.|.|.|.+|+.+|+.+|++|
T Consensus 73 ~--~~~~~~~~s~~~~~~W~~~l~~~ 96 (96)
T cd00821 73 G--RSYLLQAESEEEREEWIEALQSA 96 (96)
T ss_pred C--cEEEEEeCCHHHHHHHHHHHhcC
Confidence 5 78899999999999999988754
No 55
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.86 E-value=0.00013 Score=66.70 Aligned_cols=94 Identities=17% Similarity=0.270 Sum_probs=68.4
Q ss_pred eeeEEEEEeecccccccccceeeEeeceeeeeeecCCCCCCCcceeeeeec-cceEEecCccceeeCcEEEEEEEecCCC
Q 004576 10 IEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIH-SCIRVTDNGRESINRKVLFVFTLYNSLD 88 (744)
Q Consensus 10 ~~gWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~-~~~rVed~Gr~~~~~~~~~v~~~yn~~~ 88 (744)
.|||+..+++ .-+..|||+|=+..|=|+++.+... ..--..++|. .++.|+|.-= ..+.-+.|.||++
T Consensus 4 kEG~L~K~~~-----k~~~~R~~FLFnD~LlY~~~~~~~~-~~y~~~~~i~L~~~~V~~~~~---~~~~~~~F~I~~~-- 72 (99)
T cd01220 4 RQGCLLKLSK-----KGLQQRMFFLFSDLLLYTSKSPTDQ-NSFRILGHLPLRGMLTEESEH---EWGVPHCFTIFGG-- 72 (99)
T ss_pred eEEEEEEEeC-----CCCceEEEEEccceEEEEEeecCCC-ceEEEEEEEEcCceEEeeccC---CcCCceeEEEEcC--
Confidence 6999988654 3468899999888888888776443 1223456665 6777875211 0133468888854
Q ss_pred CcceEEEecCCHHHHHHHHHHHHHHHH
Q 004576 89 HNEKLKLGARSPEEAAKWIRSLQEAAV 115 (744)
Q Consensus 89 ~~~~~~~~~~~~eea~~w~~~~~~a~~ 115 (744)
.+.+.+.|.|++|..+|+++|++||+
T Consensus 73 -~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 73 -QCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred -CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 56789999999999999999999986
No 56
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.82 E-value=0.00011 Score=67.35 Aligned_cols=94 Identities=23% Similarity=0.282 Sum_probs=62.6
Q ss_pred eeeEEEEEee-cccccccccceeeEeeceeeeeeecCCCCCCCcceeeeeec--cceEEe--cCccceeeCcEEEEEEEe
Q 004576 10 IEGWLYAILV-NRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIH--SCIRVT--DNGRESINRKVLFVFTLY 84 (744)
Q Consensus 10 ~~gWm~~~~~-~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~--~~~rVe--d~Gr~~~~~~~~~v~~~y 84 (744)
.||||-.=|. =|.=-++ +.|||||.|+.|.|||+.+.+ .|. .++|+ .+.-|. +.++.. .+. =+.|.|.
T Consensus 2 ~~G~l~k~~g~~r~~K~W-krRwF~L~~~~L~y~K~~~~~---~~~-~g~IdL~~~~sVk~~~~~~~~-~~~-~~~Fei~ 74 (101)
T cd01264 2 IEGQLKEKKGRWRFIKRW-KTRYFTLSGAQLLFQKGKSKD---DPD-DCSIDLSKIRSVKAVAKKRRD-RSL-PKAFEIF 74 (101)
T ss_pred cceEEeecCccceeeecc-eeEEEEEeCCEEEEEeccCcc---CCC-CceEEcccceEEeeccccccc-ccc-CcEEEEE
Confidence 5788855222 1233455 789999999999999977654 233 44554 222232 333322 122 3588885
Q ss_pred cCCCCcceEEEecCCHHHHHHHHHHHHHH
Q 004576 85 NSLDHNEKLKLGARSPEEAAKWIRSLQEA 113 (744)
Q Consensus 85 n~~~~~~~~~~~~~~~eea~~w~~~~~~a 113 (744)
.+ ++++-|.|.|.+|+..|+++|+.|
T Consensus 75 tp---~rt~~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 75 TA---DKTYILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred cC---CceEEEEeCCHHHHHHHHHHHHhh
Confidence 54 588999999999999999988877
No 57
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.80 E-value=0.00015 Score=66.23 Aligned_cols=92 Identities=27% Similarity=0.450 Sum_probs=59.6
Q ss_pred eeeEEEEEeecccccccccceeeEee-ceeeeeeecCCCCC--CCcceeeeeeccceEEe-cCccceeeCcEEEEEEEe-
Q 004576 10 IEGWLYAILVNRIGMQISRKRYFILL-DNCLNGYKMVPSSE--KEEPVKSAMIHSCIRVT-DNGRESINRKVLFVFTLY- 84 (744)
Q Consensus 10 ~~gWm~~~~~~~lg~~~~~~ry~vl~-~~~~~~yKr~P~~~--~~~pi~~~ii~~~~rVe-d~Gr~~~~~~~~~v~~~y- 84 (744)
.||||..-|. ...-=++|||||. +..+.+||.+|.+. +..|+....|..+.-+. |.++. +.|.|-
T Consensus 3 k~G~L~K~g~---~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~-------~~F~i~~ 72 (102)
T cd01241 3 KEGWLHKRGE---YIKTWRPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQLMKTERPRP-------NTFIIRC 72 (102)
T ss_pred EEEEEEeecC---CCCCCeeEEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeeeeeccCCCc-------ceEEEEe
Confidence 7999999654 2333489999999 78888999888653 35666666665532222 32211 344443
Q ss_pred -cCC-CCcceEEEecCCHHHHHHHHHHHHHH
Q 004576 85 -NSL-DHNEKLKLGARSPEEAAKWIRSLQEA 113 (744)
Q Consensus 85 -n~~-~~~~~~~~~~~~~eea~~w~~~~~~a 113 (744)
+.. ...+ .+.|.|.||...|++||+.+
T Consensus 73 ~~~~~~~~r--~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 73 LQWTTVIER--TFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred ccCCcccCE--EEEeCCHHHHHHHHHHHHhh
Confidence 211 1112 55689999999999988765
No 58
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=97.80 E-value=3.9e-06 Score=95.25 Aligned_cols=91 Identities=31% Similarity=0.307 Sum_probs=77.5
Q ss_pred CCCCCceEEEEEEEEEcCCCeEEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceEEEEEEEEeCCcccccccc
Q 004576 262 WGMQRRDLLVRRYWRREDDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYLRP 341 (744)
Q Consensus 262 ~~vs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~VTyi~qvDpkGwiP~~~~ 341 (744)
.|.+.|||+++| |.++++..|+.|...++..| |||.+..+.|+|+|++.+ +++|+|++.+|++|..|.||+
T Consensus 574 ~ph~~~~~~ViR-------gacv~a~~svk~~~a~~l~~-vrA~~~~~r~liep~g~g-~sr~~~i~r~dlkg~~~~wy~ 644 (674)
T KOG2200|consen 574 RPHPSRDFGVIR-------GACVLAPLSVKVSMAIQLGG-VRATVLDSRFLIEPCGGG-QSRVTHICRVDLKGRSPEWYN 644 (674)
T ss_pred CCCCCCCceeee-------eeeeecccccchhhhhhhcc-chhhhhhhhhhccccCCc-chhhhhhhhhhcccCCchhhh
Confidence 568899999999 78999999999987877778 999999999999999887 689999999999999999999
Q ss_pred cc-hhhHHHHHHHHHHHHHHHHHhh
Q 004576 342 SS-ARSITIRMLERVAALRELFQAK 365 (744)
Q Consensus 342 ~~-~~~~~~~mL~~va~LRe~~~~~ 365 (744)
+. ++.|+ ..++.+|+.|...
T Consensus 645 k~fg~~c~----~~~~~~r~sf~~~ 665 (674)
T KOG2200|consen 645 KSFGHLCC----LEVARIRDSFHTL 665 (674)
T ss_pred ccccchhh----hhhcccchhhccc
Confidence 54 44444 3456788777643
No 59
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.76 E-value=0.00053 Score=64.21 Aligned_cols=114 Identities=8% Similarity=-0.095 Sum_probs=72.6
Q ss_pred EEEEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEecCCcEEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeE
Q 004576 204 IMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTY 283 (744)
Q Consensus 204 ~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~~dGsy 283 (744)
++.+..+++||++|+++|.|.+. ..+|.+.+.+.+++ +++...++.+... ++.+.|.-...+.....++..+
T Consensus 3 ~~~~~~i~a~~e~v~~~l~D~~~-~~~w~p~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 74 (144)
T cd05018 3 ISGEFRIPAPPEEVWAALNDPEV-LARCIPGCESLEKI---GPNEYEATVKLKV----GPVKGTFKGKVELSDLDPPESY 74 (144)
T ss_pred eeeEEEecCCHHHHHHHhcCHHH-HHhhccchhhcccc---CCCeEEEEEEEEE----ccEEEEEEEEEEEEecCCCcEE
Confidence 56788899999999999999884 88999988876554 3444444444331 3344443322333222233444
Q ss_pred EEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceEEEEEEEEeCCccc
Q 004576 284 VILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWK 336 (744)
Q Consensus 284 vI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~VTyi~qvDpkGwi 336 (744)
.+....... .++. ...+.|.++|.++ +|+|+|..+++++|.+
T Consensus 75 ~~~~~~~~~------~~~~---~~~~~~~l~~~~~--gT~v~~~~~~~~~g~l 116 (144)
T cd05018 75 TITGEGKGG------AGFV---KGTARVTLEPDGG--GTRLTYTADAQVGGKL 116 (144)
T ss_pred EEEEEEcCC------CceE---EEEEEEEEEecCC--cEEEEEEEEEEEccCh
Confidence 444322111 1122 3456899999843 5999999999999976
No 60
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.76 E-value=0.00015 Score=68.52 Aligned_cols=80 Identities=25% Similarity=0.425 Sum_probs=60.5
Q ss_pred cceeeEeeceeeeeeecCCCCCCCcceeeeeeccceEEecCccce--------eeCcEEEEEEEecCCCCcceEEEecCC
Q 004576 28 RKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGRES--------INRKVLFVFTLYNSLDHNEKLKLGARS 99 (744)
Q Consensus 28 ~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~--------~~~~~~~v~~~yn~~~~~~~~~~~~~~ 99 (744)
++|||||++.+|.||+ +|.+ ..|.--.++|.+.-|+..+.+. .+...-+.|+|-| .+++++|.|.|
T Consensus 34 ~kRWFvlr~s~L~Y~~-~~~~--~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t---~~R~~~l~a~s 107 (121)
T cd01254 34 QKRWFIVKESFLAYMD-DPSS--AQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITN---SNRSLKLKCKS 107 (121)
T ss_pred cceeEEEeCCEEEEEc-CCCC--CceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEc---CCcEEEEEeCC
Confidence 8999999999999999 3333 3555556668888888655431 1123347888855 47899999999
Q ss_pred HHHHHHHHHHHHHH
Q 004576 100 PEEAAKWIRSLQEA 113 (744)
Q Consensus 100 ~eea~~w~~~~~~a 113 (744)
..++..|+++|++|
T Consensus 108 ~~~~~~Wi~~i~~a 121 (121)
T cd01254 108 SRKLKQWMASIEDA 121 (121)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988875
No 61
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.71 E-value=0.00018 Score=65.14 Aligned_cols=94 Identities=29% Similarity=0.420 Sum_probs=65.9
Q ss_pred eeeEEEEEeecccccccccceeeEeeceeeeeeecCCCCCCCcceeeeee---ccceEEecCccceeeCcEEEEEEEecC
Q 004576 10 IEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMI---HSCIRVTDNGRESINRKVLFVFTLYNS 86 (744)
Q Consensus 10 ~~gWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii---~~~~rVed~Gr~~~~~~~~~v~~~yn~ 86 (744)
--|||-....+ +.+--..-|+|||...+|.+||..-... +++|| |..+|.-|.|- ..++ ++|.+||.
T Consensus 3 rkgwl~~~n~~-~m~ggsK~~WFVLt~~~L~wykd~eeKE-----~kyilpLdnLk~Rdve~gf--~sk~--~~FeLfnp 72 (110)
T cd01256 3 RKGWLSISNVG-IMKGGSKDYWFVLTSESLSWYKDDEEKE-----KKYMLPLDGLKLRDIEGGF--MSRN--HKFALFYP 72 (110)
T ss_pred eeeeEEeeccc-eecCCCcceEEEEecceeeeeccccccc-----ccceeeccccEEEeecccc--cCCC--cEEEEEcC
Confidence 35898764433 3334568899999999999999432111 34454 45555555552 2222 89999987
Q ss_pred CCC-----cceEEEecCCHHHHHHHHHHHHHH
Q 004576 87 LDH-----NEKLKLGARSPEEAAKWIRSLQEA 113 (744)
Q Consensus 87 ~~~-----~~~~~~~~~~~eea~~w~~~~~~a 113 (744)
... .++++++|.|.||...|+-+|-.|
T Consensus 73 d~rnvykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 73 DGRNVYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred cccccccchheeeecCCCHHHHHHHHHHHHhc
Confidence 644 489999999999999999988766
No 62
>PF15409 PH_8: Pleckstrin homology domain
Probab=97.62 E-value=0.00018 Score=64.57 Aligned_cols=84 Identities=30% Similarity=0.406 Sum_probs=57.2
Q ss_pred eEEEEEeecccccccccceeeEe--eceeeeeeecCCCC--CCCcceeeeeeccceEEecCccceeeCcEEEEEEEecCC
Q 004576 12 GWLYAILVNRIGMQISRKRYFIL--LDNCLNGYKMVPSS--EKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSL 87 (744)
Q Consensus 12 gWm~~~~~~~lg~~~~~~ry~vl--~~~~~~~yKr~P~~--~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~ 87 (744)
|||-.=.+++ ++=-++||||| +.-.|.||+...+. .|..||..++|..+. ..++.++.+
T Consensus 1 G~llKkrr~~--lqG~~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~a~is~~~----~~~~I~ids----------- 63 (89)
T PF15409_consen 1 GWLLKKRRKP--LQGWHKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSLAVISANK----KSRRIDIDS----------- 63 (89)
T ss_pred Ccceeecccc--CCCceeEEEEEEcCCcEEEEEecCCCCeeEeEEEccceEEEecC----CCCEEEEEc-----------
Confidence 5666633332 34449999999 99999999955543 467888888886442 223332211
Q ss_pred CCcceEEEecCCHHHHHHHHHHHHHH
Q 004576 88 DHNEKLKLGARSPEEAAKWIRSLQEA 113 (744)
Q Consensus 88 ~~~~~~~~~~~~~eea~~w~~~~~~a 113 (744)
+ ....-|.|.|.+|..+|+.||+.|
T Consensus 64 g-~~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 64 G-DEIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred C-CeEEEEEcCCHHHHHHHHHHHHhc
Confidence 1 223477899999999999999987
No 63
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.57 E-value=0.00037 Score=63.36 Aligned_cols=95 Identities=20% Similarity=0.189 Sum_probs=59.6
Q ss_pred eeeEEEE--E----eecccccccccceeeEeeceeeeeeecCCCCCCCcceeeeeecc-ceEEec-CccceeeCcEEEEE
Q 004576 10 IEGWLYA--I----LVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHS-CIRVTD-NGRESINRKVLFVF 81 (744)
Q Consensus 10 ~~gWm~~--~----~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~-~~rVed-~Gr~~~~~~~~~v~ 81 (744)
|||+|.+ . |...-.+.+ +.||+||.|..|.+||...... +.+.....|+- ++.|+- ..-. +-=++|
T Consensus 1 ~~g~l~rk~~~~~~g~~~~~~~W-k~r~~vL~~~~L~~ykd~~~~~-~~~~~~~~i~l~~~~i~~~~~~~----k~~~~F 74 (104)
T cd01253 1 MEGSLERKHELESGGKKASNRSW-DNVYGVLCGQSLSFYKDEKMAA-ENVHGEPPVDLTGAQCEVASDYT----KKKHVF 74 (104)
T ss_pred CCceEeEEEEeecCCcccCCCCc-ceEEEEEeCCEEEEEecCcccc-cCCCCCCcEeccCCEEEecCCcc----cCceEE
Confidence 6888886 2 444445555 9999999999999999432221 11101112331 444441 1211 112678
Q ss_pred EEecCCCCcceEEEecCCHHHHHHHHHHHHH
Q 004576 82 TLYNSLDHNEKLKLGARSPEEAAKWIRSLQE 112 (744)
Q Consensus 82 ~~yn~~~~~~~~~~~~~~~eea~~w~~~~~~ 112 (744)
+|-+. ..+.+.|.|.|.|+...|+.||+.
T Consensus 75 ~l~~~--~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 75 RLRLP--DGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred EEEec--CCCEEEEECCCHHHHHHHHHHHhc
Confidence 88765 346779999999999999998764
No 64
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=97.57 E-value=0.00084 Score=63.26 Aligned_cols=137 Identities=15% Similarity=0.081 Sum_probs=78.1
Q ss_pred EEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEecCCcEEEEEEEeecCCCCCCCCCceEEEE--EEEEEcCCCeE
Q 004576 206 AVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVR--RYWRREDDGTY 283 (744)
Q Consensus 206 a~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~tdIvY~~~~~~~lp~~vs~RDFV~l--R~wrr~~dGsy 283 (744)
...+|++|+++||++|.|.+. .++|.+. ...++++. ++....++.. .+..++..+. .....+..+..
T Consensus 3 ~s~~i~ap~~~V~~~l~D~~~-~p~~~p~-~~~~~~~~-~~~~~~~~~~--------~~~~~g~~~~~~~~~~~~~~~~~ 71 (142)
T cd08861 3 HSVTVAAPAEDVYDLLADAER-WPEFLPT-VHVERLEL-DGGVERLRMW--------ATAFDGSVHTWTSRRVLDPEGRR 71 (142)
T ss_pred EEEEEcCCHHHHHHHHHhHHh-hhccCCC-ceEEEEEE-cCCEEEEEEE--------EEcCCCcEEEEEEEEEEcCCCCE
Confidence 357899999999999999985 7889998 77787776 3443344421 1222333221 11111222322
Q ss_pred EEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceEEEEEEEEeCCcccccccccchhhHHHHHHHHHHHHHHHHH
Q 004576 284 VILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYLRPSSARSITIRMLERVAALRELFQ 363 (744)
Q Consensus 284 vI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~VTyi~qvDpkGwiP~~~~~~~~~~~~~mL~~va~LRe~~~ 363 (744)
|....+.- ++. .....+.|.++|.+++ +|+|+|.+..++++.+|---......+...+-..+++||+++.
T Consensus 72 -i~~~~~~~------~~~--~~~~~g~w~~~~~~~~-~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 141 (142)
T cd08861 72 -IVFRQEEP------PPP--VASMSGEWRFEPLGGG-GTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAE 141 (142)
T ss_pred -EEEEEeeC------CCC--hhhheeEEEEEECCCC-cEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhh
Confidence 33333321 011 1233468999999754 6999999999999987721111111121123344567776653
No 65
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.47 E-value=0.00076 Score=62.24 Aligned_cols=92 Identities=21% Similarity=0.325 Sum_probs=60.5
Q ss_pred eeeEEEEEeecc------cccccccceeeEee-ceeeeeeecCCCCCCCcceeeeee--ccceEEecCccceeeCcEEEE
Q 004576 10 IEGWLYAILVNR------IGMQISRKRYFILL-DNCLNGYKMVPSSEKEEPVKSAMI--HSCIRVTDNGRESINRKVLFV 80 (744)
Q Consensus 10 ~~gWm~~~~~~~------lg~~~~~~ry~vl~-~~~~~~yKr~P~~~~~~pi~~~ii--~~~~rVed~Gr~~~~~~~~~v 80 (744)
+.|||+.=+..+ +.+.-=++|||||. +..|.|||.+|-+ ..|. |+| +.+..|.+ |... .++ =+.
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~--~~p~--G~IdL~~~~~V~~-~~~~-~~~-~~~ 73 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPT--TLPQ--GTIDMNQCTDVVD-AEAR-TGQ-KFS 73 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCC--cccc--eEEEccceEEEee-cccc-cCC-ccE
Confidence 469999844432 44444589999997 6789888866422 2553 555 46666663 2111 111 235
Q ss_pred EEEecCCCCcceEEEecCCHHHHHHHHHHHH
Q 004576 81 FTLYNSLDHNEKLKLGARSPEEAAKWIRSLQ 111 (744)
Q Consensus 81 ~~~yn~~~~~~~~~~~~~~~eea~~w~~~~~ 111 (744)
|+|-.. .+++-|.|.|++|...|+++|.
T Consensus 74 f~I~tp---~R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 74 ICILTP---DKEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred EEEECC---CceEEEEeCCHHHHHHHHHHHH
Confidence 666443 5888999999999999999664
No 66
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.40 E-value=0.00096 Score=61.62 Aligned_cols=89 Identities=18% Similarity=0.269 Sum_probs=62.2
Q ss_pred cccccccccceeeEeeceeeeeeecCCCCCCCcceeeeeeccceEEe-cCccceeeCcEEEEEEEecCCCCc-ceEEEec
Q 004576 20 NRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVT-DNGRESINRKVLFVFTLYNSLDHN-EKLKLGA 97 (744)
Q Consensus 20 ~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVe-d~Gr~~~~~~~~~v~~~yn~~~~~-~~~~~~~ 97 (744)
.|+...--..|||+|+|..|.|||.++... ..|+-.. -..+|.|. |... .+.-|.+++....++. +.+.|.|
T Consensus 13 ~~~~~K~~KrrwF~lk~~~L~YyK~kee~~-~~p~i~l-nl~gcev~~dv~~----~~~kf~I~l~~ps~~~~r~y~l~c 86 (106)
T cd01237 13 KKLTLKGYKQYWFTFRDTSISYYKSKEDSN-GAPIGQL-NLKGCEVTPDVNV----AQQKFHIKLLIPTAEGMNEVWLRC 86 (106)
T ss_pred chhhhhhheeEEEEEeCCEEEEEccchhcC-CCCeEEE-ecCceEEcccccc----cccceEEEEecCCccCCeEEEEEC
Confidence 344444457899999999999999877654 3342221 12566665 4310 0113999999886544 6689999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 004576 98 RSPEEAAKWIRSLQEAA 114 (744)
Q Consensus 98 ~~~eea~~w~~~~~~a~ 114 (744)
.|.++=++||.|++.|.
T Consensus 87 dsEeqya~Wmaa~rlas 103 (106)
T cd01237 87 DNEKQYAKWMAACRLAS 103 (106)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999999883
No 67
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=97.38 E-value=0.0047 Score=57.35 Aligned_cols=109 Identities=14% Similarity=0.069 Sum_probs=76.1
Q ss_pred ecCCHHHHHHHHHcCCCCccccccccceeEEEEecCCcEEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEEEEEec
Q 004576 210 VDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYVILYHS 289 (744)
Q Consensus 210 V~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~~dGsyvI~~~S 289 (744)
|+||+++|++++.|.+. .++|-+.+.++++++.-++++.+ +.... .....+.|+.......... +....
T Consensus 1 V~ap~~~V~~~i~D~e~-~~~~~p~~~~v~vl~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~----~~~~~ 69 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYEN-YPRFFPPVKEVRVLERDGDGMRA-RWEVK-----FGGIKRSWTSRVTEDPPER----IRFEQ 69 (130)
T ss_dssp ESS-HHHHHHHHTTGGG-HHHHCTTEEEEEEEEEECCEEEE-EEEEC-----TTTTCEEEEEEEEEECTTT----EEEES
T ss_pred CCCCHHHHHHHHHHHHH-HHHhCCCCceEEEEEeCCCeEEE-EEEEe-----cCCEEEEEEEEEEEEEeee----eeeee
Confidence 68999999999999984 89999999999999987775444 32222 2334566655444332222 32222
Q ss_pred cCCCCCCCCCCeEEEEEeceeEEEEeCCC---CCceEEEEEEEEeCCcccccc
Q 004576 290 VNHKKCPKQKGYVRACLKSGGFVITPSNQ---GKQSIVKHMLAVDWKYWKLYL 339 (744)
Q Consensus 290 V~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~---~~~c~VTyi~qvDpkGwiP~~ 339 (744)
+. |-. ....+.|.++|.++ +..|.|+|.+.++++|.+|.+
T Consensus 70 ~~--------g~~--~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~ 112 (130)
T PF03364_consen 70 IS--------GPF--KSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGF 112 (130)
T ss_dssp SE--------TTE--EEEEEEEEEEEETTECCEEEEEEEEEEEEETSSSSHHH
T ss_pred cC--------CCc--hhcEEEEEEEECCCCcCCCEEEEEEEEEEecCcHhHHH
Confidence 21 222 34467999999986 668999999999999999985
No 68
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.34 E-value=0.00065 Score=62.08 Aligned_cols=87 Identities=21% Similarity=0.241 Sum_probs=59.0
Q ss_pred eEEEEEeecccccccccceeeEeec----eeeeeeecCCCCCCCcceeeeeec-cceEEecCccceeeCcEE---EEEEE
Q 004576 12 GWLYAILVNRIGMQISRKRYFILLD----NCLNGYKMVPSSEKEEPVKSAMIH-SCIRVTDNGRESINRKVL---FVFTL 83 (744)
Q Consensus 12 gWm~~~~~~~lg~~~~~~ry~vl~~----~~~~~yKr~P~~~~~~pi~~~ii~-~~~rVed~Gr~~~~~~~~---~v~~~ 83 (744)
||+..-|.+ .--.+ +.|||+|.+ +.+.|||..+.. .|+ ++|+ .++.|. .+|.+.+ |+|.+
T Consensus 3 G~l~K~g~~-~~K~w-K~rwF~l~~~~s~~~l~yf~~~~~~---~p~--gli~l~~~~V~-----~v~ds~~~r~~cFel 70 (98)
T cd01245 3 GNLLKRTKS-VTKLW-KTLYFALILDGSRSHESLLSSPKKT---KPI--GLIDLSDAYLY-----PVHDSLFGRPNCFQI 70 (98)
T ss_pred CccccCCCC-ccccc-ceeEEEEecCCCCceEEEEcCCCCC---Ccc--ceeeccccEEE-----EccccccCCCeEEEE
Confidence 566553321 12234 679999998 999999966643 453 3554 555555 3455555 99999
Q ss_pred ecCCCCcceEEEecCCHHHHHHHHHHHHH
Q 004576 84 YNSLDHNEKLKLGARSPEEAAKWIRSLQE 112 (744)
Q Consensus 84 yn~~~~~~~~~~~~~~~eea~~w~~~~~~ 112 (744)
++...| ....+.|.+ +|..+||++|+.
T Consensus 71 ~~~~~~-~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 71 VERALP-TVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred ecCCCC-eEEEEeCCH-HHHHHHHHHHhc
Confidence 998875 344777777 999999997763
No 69
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=97.30 E-value=0.0091 Score=55.19 Aligned_cols=138 Identities=17% Similarity=0.110 Sum_probs=80.2
Q ss_pred eEEEEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEecCCcEEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCe
Q 004576 203 AIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGT 282 (744)
Q Consensus 203 ~~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~~dGs 282 (744)
.++.+..|++|++.|+++|.|.+. ..+|.+.+.+.++++.-++--.+....+. .. +.+. .+.... +...
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~~~-~~~w~~~~~~~~~~~~~~~~g~~~~~~~~-----~g---~~~~-~~i~~~-~~~~ 70 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDFGG-LHKWHPAVASCELEGGGPGVGAVRTVTLK-----DG---GTVR-ERLLAL-DDAE 70 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCcCc-hhhhccCcceEEeecCCCCCCeEEEEEeC-----CC---CEEE-EEehhc-CccC
Confidence 367788999999999999999984 78999998888876643201112222111 11 1111 111111 2221
Q ss_pred EEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceEEEEEEEEeCCcccccccccchhhHHHHHHHHHHHHHHHH
Q 004576 283 YVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYLRPSSARSITIRMLERVAALRELF 362 (744)
Q Consensus 283 yvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~VTyi~qvDpkGwiP~~~~~~~~~~~~~mL~~va~LRe~~ 362 (744)
..+..+.+.- ..| .....+.|.++|++++ +|+|+|....+++|.++.+ .....+--.+-..+++|++++
T Consensus 71 ~~i~~~~~~~-~~~-------~~~~~~~~~~~~~~~~-~t~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 71 RRYSYRIVEG-PLP-------VKNYVATIRVTPEGDG-GTRVTWTAEFDPPEGLTDE--LARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred CEEEEEecCC-CCC-------cccceEEEEEEECCCC-ccEEEEEEEEecCCCcchH--HHHHHHHHHHHHHHHHHHHhh
Confidence 2333333321 011 1123467999998764 6999999999999886654 222222222345667788765
No 70
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=97.14 E-value=0.02 Score=55.73 Aligned_cols=137 Identities=11% Similarity=0.100 Sum_probs=82.2
Q ss_pred EEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEecCCcEEEEEEEeecCCCCCCCCCceEEEEEEE--E-EcCCCe
Q 004576 206 AVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYW--R-REDDGT 282 (744)
Q Consensus 206 a~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~tdIvY~~~~~~~lp~~vs~RDFV~lR~w--r-r~~dGs 282 (744)
-..+|++||+.||+++.|... .++|.+.+.++++++. +++......+.... .. .+ ...| + ..+...
T Consensus 5 ~si~i~a~~~~v~~lvaDv~~-~P~~~~~~~~~~~l~~-~~~~~~~r~~i~~~-----~~--g~--~~~w~s~~~~~~~~ 73 (146)
T cd08860 5 NSIVIDAPLDLVWDMTNDIAT-WPDLFSEYAEAEVLEE-DGDTVRFRLTMHPD-----AN--GT--VWSWVSERTLDPVN 73 (146)
T ss_pred eEEEEcCCHHHHHHHHHhhhh-hhhhccceEEEEEEEe-cCCeEEEEEEEEec-----cC--CE--EEEEEEEEEecCCC
Confidence 356899999999999999994 9999999999999986 44444443322211 11 12 2223 1 223334
Q ss_pred EEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceEEEEEEEEeCCcccccccccchhhHHHHHHHHHHHHHHHH
Q 004576 283 YVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYLRPSSARSITIRMLERVAALRELF 362 (744)
Q Consensus 283 yvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~VTyi~qvDpkGwiP~~~~~~~~~~~~~mL~~va~LRe~~ 362 (744)
+.|.++.+ +. +|- ....+.|.++|++++ |+|+|......++-.|.-...+...+-..+-..+++||+.+
T Consensus 74 ~~i~~~~~--~~-~p~------~~m~~~W~f~~~~~g--T~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~a 142 (146)
T cd08860 74 RTVRARRV--ET-GPF------AYMNIRWEYTEVPEG--TRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKI 142 (146)
T ss_pred cEEEEEEe--cC-CCc------ceeeeeEEEEECCCC--EEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHh
Confidence 54555422 22 221 134568999999664 99999999997753332111122222222335567888776
Q ss_pred Hh
Q 004576 363 QA 364 (744)
Q Consensus 363 ~~ 364 (744)
++
T Consensus 143 E~ 144 (146)
T cd08860 143 EA 144 (146)
T ss_pred hh
Confidence 64
No 71
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.10 E-value=0.021 Score=53.08 Aligned_cols=134 Identities=10% Similarity=0.003 Sum_probs=79.5
Q ss_pred EEEEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEecCCcEEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeE
Q 004576 204 IMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTY 283 (744)
Q Consensus 204 ~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~~dGsy 283 (744)
+..+..|++|+++|++++.|... .++|.+.+.+++++.. ... ...+. .|+ ...++|..... ....+..
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~~-~~~w~~~~~~~~~~~~--~~~---~~~~~---~~~-g~~~~~~~~v~-~~~~~~~- 69 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFEN-LPRFMSHVESVEQLDD--TRS---HWKAK---GPA-GLSVEWDAEIT-EQVPNER- 69 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChhh-hHHHhhhhcEEEEcCC--Cce---EEEEe---cCC-CCcEEEEEEEe-ccCCCCE-
Confidence 35678899999999999999984 8999999988877643 112 12212 122 34556644221 2223332
Q ss_pred EEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceEEEEEEEEeCCccccccc-ccchhhHHHH-HHHHHHHHHHH
Q 004576 284 VILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYLR-PSSARSITIR-MLERVAALREL 361 (744)
Q Consensus 284 vI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~VTyi~qvDpkGwiP~~~-~~~~~~~~~~-mL~~va~LRe~ 361 (744)
|.......+. . ..+.|.++|.+++ +|+|||.++.++.+..+..+ ..+...+..+ +-..+++||++
T Consensus 70 -i~~~~~~~~~--~---------~~~~~~f~~~~~~-~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~ 136 (139)
T cd07817 70 -IAWRSVEGAD--P---------NAGSVRFRPAPGR-GTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQL 136 (139)
T ss_pred -EEEEECCCCC--C---------cceEEEEEECCCC-CeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3333333211 1 2356778998764 69999999999998776532 1111222222 33455666665
Q ss_pred H
Q 004576 362 F 362 (744)
Q Consensus 362 ~ 362 (744)
+
T Consensus 137 a 137 (139)
T cd07817 137 V 137 (139)
T ss_pred h
Confidence 4
No 72
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.05 E-value=0.0033 Score=59.65 Aligned_cols=103 Identities=17% Similarity=0.300 Sum_probs=63.2
Q ss_pred eeeEEEEEeecccccccccceeeEeeceeeeeeecCCCCCCCcceeeeeeccceEEe--cCccceeeCcEEEEEEEecCC
Q 004576 10 IEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVT--DNGRESINRKVLFVFTLYNSL 87 (744)
Q Consensus 10 ~~gWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVe--d~Gr~~~~~~~~~v~~~yn~~ 87 (744)
|.|+|.-..... |...-+.|||||+|..|.|||.........|+-+.-++.++... +--|..-...-=|.+++....
T Consensus 3 ~~GfL~~~q~~~-~~k~W~RRWFvL~g~~L~y~k~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~ 81 (122)
T cd01263 3 YHGFLTMFEDTS-GFGAWHRRWCALEGGEIKYWKYPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPK 81 (122)
T ss_pred cceeEEEEeccC-CCCCceEEEEEEeCCEEEEEcCCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEeccc
Confidence 788887644433 66677999999999999888843332335777777776544422 222222222112344444322
Q ss_pred --------------CCcc-eEEEecCCHHHHHHHHHHHHHH
Q 004576 88 --------------DHNE-KLKLGARSPEEAAKWIRSLQEA 113 (744)
Q Consensus 88 --------------~~~~-~~~~~~~~~eea~~w~~~~~~a 113 (744)
.... +.-|+|-|.||-..|+.||.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 82 METDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred ccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 1112 2368899999999999988754
No 73
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.0022 Score=67.79 Aligned_cols=94 Identities=33% Similarity=0.590 Sum_probs=67.6
Q ss_pred eeeEEEEEeecccccccccceeeEeeceeeeeee--cCCCCCCCcceeeeeeccceE-EecCccceeeCcEEEEEEEecC
Q 004576 10 IEGWLYAILVNRIGMQISRKRYFILLDNCLNGYK--MVPSSEKEEPVKSAMIHSCIR-VTDNGRESINRKVLFVFTLYNS 86 (744)
Q Consensus 10 ~~gWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yK--r~P~~~~~~pi~~~ii~~~~r-Ved~Gr~~~~~~~~~v~~~yn~ 86 (744)
-|||+..+|.|+. .++ ..|+|||..++|.||. .+-.-.|..|+- |.++| |||. +.=++|.+||.
T Consensus 262 REGWLlKlgg~rv-ktW-KrRWFiLtdNCLYYFe~tTDKEPrGIIpLe----Nlsir~VedP-------~kP~cfEly~p 328 (395)
T KOG0930|consen 262 REGWLLKLGGNRV-KTW-KRRWFILTDNCLYYFEYTTDKEPRGIIPLE----NLSIREVEDP-------KKPNCFELYIP 328 (395)
T ss_pred ccceeeeecCCcc-cch-hheeEEeecceeeeeeeccCCCCCcceecc----ccceeeccCC-------CCCCeEEEecC
Confidence 6999999999854 344 7899999999999997 222113344433 34444 4432 23478999998
Q ss_pred CCCcce-------------------EEEecCCHHHHHHHHHHHHHHHHh
Q 004576 87 LDHNEK-------------------LKLGARSPEEAAKWIRSLQEAAVK 116 (744)
Q Consensus 87 ~~~~~~-------------------~~~~~~~~eea~~w~~~~~~a~~~ 116 (744)
.++..+ .+|.|.|.||-+.||.+++.++.+
T Consensus 329 s~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~ 377 (395)
T KOG0930|consen 329 SNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISR 377 (395)
T ss_pred CCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhcc
Confidence 874422 278999999999999999998875
No 74
>PRK10724 hypothetical protein; Provisional
Probab=96.71 E-value=0.046 Score=54.07 Aligned_cols=115 Identities=18% Similarity=0.239 Sum_probs=79.2
Q ss_pred ceEEEEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEecCCcEEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCC
Q 004576 202 PAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDG 281 (744)
Q Consensus 202 ~~~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~~dG 281 (744)
+.++.+..|++|++++|+++.|.+. .++|-+.+.+++++++-++.. +...+.. + . ++ ..-|.....+. .++
T Consensus 15 ~~i~~~~~v~~s~~~v~~lv~Dve~-yp~flp~~~~s~vl~~~~~~~-~a~l~v~--~-~-g~-~~~f~srv~~~--~~~ 85 (158)
T PRK10724 15 PQISRTALVPYSAEQMYQLVNDVQS-YPQFLPGCTGSRVLESTPGQM-TAAVDVS--K-A-GI-SKTFTTRNQLT--SNQ 85 (158)
T ss_pred CeEEEEEEecCCHHHHHHHHHHHHH-HHHhCcccCeEEEEEecCCEE-EEEEEEe--e-C-Cc-cEEEEEEEEec--CCC
Confidence 4688889999999999999999984 899999999999999866542 2222211 1 1 11 33444434432 233
Q ss_pred eEEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceEEEEEEEEeCCccccc
Q 004576 282 TYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLY 338 (744)
Q Consensus 282 syvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~VTyi~qvDpkGwiP~ 338 (744)
-|....++. | .+ ...|.|.++|++++ +|+|++.++.+++-.+++
T Consensus 86 --~I~~~~~~G---p-----F~--~l~g~W~f~p~~~~-~t~V~~~l~fef~s~l~~ 129 (158)
T PRK10724 86 --SILMQLVDG---P-----FK--KLIGGWKFTPLSQE-ACRIEFHLDFEFTNKLIE 129 (158)
T ss_pred --EEEEEecCC---C-----hh--hccceEEEEECCCC-CEEEEEEEEEEEchHHHH
Confidence 244454432 1 22 35689999999754 699999999998887776
No 75
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=96.55 E-value=0.4 Score=44.19 Aligned_cols=132 Identities=11% Similarity=0.042 Sum_probs=73.6
Q ss_pred EEEEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEecCCcEEEEEEEeecCCCCCCCCCceEEEEEEEEEcC-CCe
Q 004576 204 IMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRRED-DGT 282 (744)
Q Consensus 204 ~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~~-dGs 282 (744)
+..+..|++||++||++|.|... ..+|.+.+..++++.. +...+.. .+... +. .-+..+....++ ...
T Consensus 4 ~~~~~~v~a~~e~V~~~l~d~~~-~~~w~~~~~~~~~~~~--~~~~~~~-~~~~~---g~----~~~~~~i~~~~~~~~~ 72 (139)
T PF10604_consen 4 VEVSIEVPAPPEAVWDLLSDPEN-WPRWWPGVKSVELLSG--GGPGTER-TVRVA---GR----GTVREEITEYDPEPRR 72 (139)
T ss_dssp EEEEEEESS-HHHHHHHHTTTTG-GGGTSTTEEEEEEEEE--CSTEEEE-EEEEC---SC----SEEEEEEEEEETTTTE
T ss_pred EEEEEEECCCHHHHHHHHhChhh-hhhhhhceEEEEEccc--cccceeE-EEEec---cc----cceeEEEEEecCCCcE
Confidence 45677899999999999999884 8899999998887762 2222212 22221 11 223333222223 333
Q ss_pred EEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceEEEEEEEEeCCcccccccc--cchhhHHHHHHHHHHHHHH
Q 004576 283 YVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYLRP--SSARSITIRMLERVAALRE 360 (744)
Q Consensus 283 yvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~VTyi~qvDpkGwiP~~~~--~~~~~~~~~mL~~va~LRe 360 (744)
+... .+ ..|+.. ..+.|.+.|.+++ |+|++..+.++ | ++.++. .+...+-..+-..+++|++
T Consensus 73 ~~~~--~~-------~~~~~~---~~~~~~~~~~~~g--t~v~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~l~~l~~ 136 (139)
T PF10604_consen 73 ITWR--FV-------PSGFTN---GTGRWRFEPVGDG--TRVTWTVEFEP-G-LPGWLAGPLLRPAVKRIVREALENLKR 136 (139)
T ss_dssp EEEE--EE-------SSSSCE---EEEEEEEEEETTT--EEEEEEEEEEE-S-CTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEE--EE-------ecceeE---EEEEEEEEEcCCC--EEEEEEEEEEE-e-ccchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 3222 22 122222 2457999998765 99999999998 3 223321 1222222223345566666
Q ss_pred HH
Q 004576 361 LF 362 (744)
Q Consensus 361 ~~ 362 (744)
.+
T Consensus 137 ~~ 138 (139)
T PF10604_consen 137 AA 138 (139)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 76
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=96.28 E-value=0.041 Score=52.16 Aligned_cols=101 Identities=26% Similarity=0.295 Sum_probs=68.5
Q ss_pred eeeEEEEEeecc--cccccccceeeEeeceeeeee--ecCCCCCC--CcceeeeeeccceEEec-----CccceeeCcEE
Q 004576 10 IEGWLYAILVNR--IGMQISRKRYFILLDNCLNGY--KMVPSSEK--EEPVKSAMIHSCIRVTD-----NGRESINRKVL 78 (744)
Q Consensus 10 ~~gWm~~~~~~~--lg~~~~~~ry~vl~~~~~~~y--Kr~P~~~~--~~pi~~~ii~~~~rVed-----~Gr~~~~~~~~ 78 (744)
.-.|||.+.++. .+..-+|.|||-|.......| ..+|.... ..=.+++.|+.=..|.| .|++.-. --
T Consensus 11 ~G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~--~~ 88 (123)
T PF12814_consen 11 IGEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPD--HN 88 (123)
T ss_pred cccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccc--cc
Confidence 457999987765 345689999999999555544 35675421 33456777777777775 3441111 23
Q ss_pred EEEEEecCCCCcceEEEecCCHHHHHHHHHHHHHHHH
Q 004576 79 FVFTLYNSLDHNEKLKLGARSPEEAAKWIRSLQEAAV 115 (744)
Q Consensus 79 ~v~~~yn~~~~~~~~~~~~~~~eea~~w~~~~~~a~~ 115 (744)
|+|.|.. ..+.++|.|.|.|++.-|..+|+..++
T Consensus 89 ~si~i~t---~~R~L~l~a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 89 KSIIIVT---PDRSLDLTAPSRERHEIWFNALRYLLQ 122 (123)
T ss_pred eEEEEEc---CCeEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 4455443 357899999999999999999987754
No 77
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.24 E-value=0.032 Score=52.62 Aligned_cols=100 Identities=22% Similarity=0.179 Sum_probs=64.0
Q ss_pred eeeEEEE-E-----ee-cccccccccceeeEeeceeeeeeecC--CCCC-C-Ccceeeeeeccce-EEecCccceeeCcE
Q 004576 10 IEGWLYA-I-----LV-NRIGMQISRKRYFILLDNCLNGYKMV--PSSE-K-EEPVKSAMIHSCI-RVTDNGRESINRKV 77 (744)
Q Consensus 10 ~~gWm~~-~-----~~-~~lg~~~~~~ry~vl~~~~~~~yKr~--P~~~-~-~~pi~~~ii~~~~-rVed~Gr~~~~~~~ 77 (744)
.||+|+| . |. .+.|...=++||.||+|..|..||.. +... . ..+-...-|.+.+ .|. ....+-
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia-----~dy~Kr 76 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRA-----SDYSKK 76 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEee-----ccccCC
Confidence 4788888 1 22 23444444999999999999999943 2111 0 1111223344433 444 223344
Q ss_pred EEEEEEecCCCCcceEEEecCCHHHHHHHHHHHHHHHHh
Q 004576 78 LFVFTLYNSLDHNEKLKLGARSPEEAAKWIRSLQEAAVK 116 (744)
Q Consensus 78 ~~v~~~yn~~~~~~~~~~~~~~~eea~~w~~~~~~a~~~ 116 (744)
-+||+|-...+ +.+-|-|.+.||+..|+.+|..|++-
T Consensus 77 ~~VF~L~~~~g--~~~lfqA~~~ee~~~Wi~~I~~~~~~ 113 (117)
T cd01230 77 PHVFRLRTADW--REFLFQTSSLKELQSWIERINVVAAA 113 (117)
T ss_pred CcEEEEEcCCC--CEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 56888877654 45677799999999999999998763
No 78
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=95.71 E-value=0.34 Score=44.52 Aligned_cols=109 Identities=13% Similarity=0.145 Sum_probs=61.6
Q ss_pred EEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEecC--CcEEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeE
Q 004576 206 AVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLD--GHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTY 283 (744)
Q Consensus 206 a~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID--~~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~~dGsy 283 (744)
....|++|+++|+++|.|... ..+|.+.+..++.+..-. ..+ .+...... .+...+ + ..+.... +.+.+
T Consensus 3 ~~~~i~ap~~~Vw~~l~d~~~-~~~w~~~~~~~~~~~~~~~~~g~-~~~~~~~~----~g~~~~-~-~~~v~~~-~p~~~ 73 (140)
T cd08865 3 ESIVIERPVEEVFAYLADFEN-APEWDPGVVEVEKITDGPVGVGT-RYHQVRKF----LGRRIE-L-TYEITEY-EPGRR 73 (140)
T ss_pred eEEEEcCCHHHHHHHHHCccc-hhhhccCceEEEEcCCCCCcCcc-EEEEEEEe----cCceEE-E-EEEEEEe-cCCcE
Confidence 467899999999999999984 889999887777664311 111 12222110 111111 0 1111111 12222
Q ss_pred EEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceEEEEEEEEeCCcccc
Q 004576 284 VILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKL 337 (744)
Q Consensus 284 vI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~VTyi~qvDpkGwiP 337 (744)
+...... +.+++ .+-|.+.|.++ +|+|+|....+++++.+
T Consensus 74 -~~~~~~~--------~~~~~---~~~~~~~~~~~--~t~v~~~~~~~~~~~~~ 113 (140)
T cd08865 74 -VVFRGSS--------GPFPY---EDTYTFEPVGG--GTRVRYTAELEPGGFAR 113 (140)
T ss_pred -EEEEecC--------CCcce---EEEEEEEEcCC--ceEEEEEEEEccchhHH
Confidence 2222221 11222 45799999865 49999999999977643
No 79
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=95.70 E-value=0.29 Score=46.82 Aligned_cols=139 Identities=9% Similarity=0.006 Sum_probs=72.1
Q ss_pred EEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEecCCcEEEEEEEeecCCCCCCCCCceEEEEEEEEE-c-CCCeE
Q 004576 206 AVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRR-E-DDGTY 283 (744)
Q Consensus 206 a~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr-~-~dGsy 283 (744)
.+..|++||+.|+++|.|.+. ...|.+.+ +.++.+++++-..-.+.+. .+++ ..|-.--.+.. . ....+
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~-~~~~~pg~---~~~~~~~~~~~~~~~~~~~----g~~~-~~~~~~~~~~~~~~~~~~~ 73 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIER-VAPCLPGA---SLTEVEGDDEYKGTVKVKL----GPIS-ASFKGTARLLEDDEAARRA 73 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHH-HHhcCCCc---eeccccCCCeEEEEEEEEE----ccEE-EEEEEEEEEEeccCCCcEE
Confidence 466799999999999999874 66776654 4455556555333322221 1221 12211101111 1 11122
Q ss_pred EEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceEEEEEEEEeCCcccccccccchhhHHHHHH-HHHHHHHHHH
Q 004576 284 VILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYLRPSSARSITIRML-ERVAALRELF 362 (744)
Q Consensus 284 vI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~VTyi~qvDpkGwiP~~~~~~~~~~~~~mL-~~va~LRe~~ 362 (744)
.+...... ....|.+++.+ -|.+.| +++ .|+|+|..+++..|.++...........-+++ ..+++|++.+
T Consensus 74 ~~~~~g~~----~~~~g~~~~~~---~~~l~~-~~~-gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~ 144 (146)
T cd07823 74 VLEATGKD----ARGQGTAEATV---TLRLSP-AGG-GTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARL 144 (146)
T ss_pred EEEEEEec----CCCcceEEEEE---EEEEEe-cCC-cEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHh
Confidence 22211110 01113334333 588888 433 69999999999999998753333333333333 2334465544
No 80
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=95.42 E-value=0.77 Score=40.76 Aligned_cols=112 Identities=17% Similarity=0.093 Sum_probs=65.5
Q ss_pred EEEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEecCCcEEEEEEEeecCCCCCCCCCceEEEEEEEEEc--CCCe
Q 004576 205 MAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRRE--DDGT 282 (744)
Q Consensus 205 Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~--~dGs 282 (744)
+....|++|+++||+.|.|.. ...+|.+.+..++++..........+.. . . .+....++.. +..... +...
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~--~~~~~~~~~~-~v~~~~~~~~~~ 74 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPE-RWPEWSPGLERVEVLGGGEGGVGARFVG-G--R--KGGRRLTLTS-EVTEVDPPRPGR 74 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChh-hhhhhCcccceEEEcCCCCccceeEEEE-E--e--cCCccccceE-EEEEecCCCceE
Confidence 457789999999999999988 4889999999888776422221111111 0 0 0011111111 111111 1122
Q ss_pred EEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceEEEEEEEEeCCcccc
Q 004576 283 YVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKL 337 (744)
Q Consensus 283 yvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~VTyi~qvDpkGwiP 337 (744)
|.+. +..+. ....+.|.+.|..++ +|+|++....+++++.+
T Consensus 75 ~~~~--~~~~~-----------~~~~~~~~~~~~~~~-~t~v~~~~~~~~~~~~~ 115 (141)
T cd07812 75 FRVT--GGGGG-----------VDGTGEWRLEPEGDG-GTRVTYTVEYDPPGPLL 115 (141)
T ss_pred EEEe--cCCCC-----------cceeEEEEEEECCCC-cEEEEEEEEEecCCcch
Confidence 2222 11111 233567999998763 59999999999999875
No 81
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.31 E-value=0.077 Score=49.81 Aligned_cols=52 Identities=17% Similarity=0.269 Sum_probs=36.8
Q ss_pred eeeEEEEEeecccccccccceeeEeeceeeeeeecCCCCCCCcceeeeeeccceEEec
Q 004576 10 IEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTD 67 (744)
Q Consensus 10 ~~gWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed 67 (744)
.||||+|+-..---+ ..+|++|+.|.+.||+.. .+.++.|-.....=+.|+.
T Consensus 2 kEGWmVHyT~~d~~r---KRhYWrLDsK~Itlf~~e---~~skyyKeIPLsEIl~V~~ 53 (117)
T cd01239 2 KEGWMVHYTSSDNRR---KKHYWRLDSKAITLYQEE---SGSRYYKEIPLAEILSVSS 53 (117)
T ss_pred ccceEEEEecCccce---eeeEEEecCCeEEEEEcC---CCCeeeEEeehHHheEEec
Confidence 599999965432111 367999999999999953 3457777777776666663
No 82
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=95.28 E-value=0.58 Score=44.71 Aligned_cols=109 Identities=15% Similarity=0.119 Sum_probs=64.1
Q ss_pred EEEEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEe-cCCcEEEEE-EEeecCCCCCCCCCceEEEE-EEEEEcCC
Q 004576 204 IMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEH-LDGHSDVVH-KLLYSDWLPWGMQRRDLLVR-RYWRREDD 280 (744)
Q Consensus 204 ~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~-ID~~tdIvY-~~~~~~~lp~~vs~RDFV~l-R~wrr~~d 280 (744)
|-.+..|++||+.|++++.|.+. .++|.+.+.++++++. -+......+ ..... ..+..+.+. +......+
T Consensus 3 ~~~~~~i~ap~e~Vw~~~tD~~~-~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~~~~~v~~~~p~ 75 (146)
T cd07824 3 FHTVWRIPAPPEAVWDVLVDAES-WPDWWPGVERVVELEPGDEAGIGARRRYTWRG------LLPYRLRFELRVTRIEPL 75 (146)
T ss_pred ceEEEEecCCHHHHHHHHhChhh-cchhhhceEEEEEccCCCCCCcceEEEEEEEe------cCCcEEEEEEEEEeecCC
Confidence 44567899999999999999984 8999999999888863 222221122 11111 111222111 11111122
Q ss_pred CeEEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceEEEEEEEEeCCcc
Q 004576 281 GTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYW 335 (744)
Q Consensus 281 GsyvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~VTyi~qvDpkGw 335 (744)
..+.+ .. .. + ..+ .+.|.++|.++ +|+|++-..++.+|-
T Consensus 76 ~~~~~--~~-~g---~-----~~~---~~~~~~~~~~~--gt~vt~~~~~~~~~~ 114 (146)
T cd07824 76 SLLEV--RA-SG---D-----LEG---VGRWTLAPDGS--GTVVRYDWEVRTTKP 114 (146)
T ss_pred cEEEE--EE-EE---e-----eeE---EEEEEEEEcCC--CEEEEEEEEEEcCHH
Confidence 22222 21 11 1 222 35799999755 499999999999883
No 83
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.96 E-value=0.23 Score=45.99 Aligned_cols=89 Identities=12% Similarity=0.206 Sum_probs=59.6
Q ss_pred cccccccccceeeEeeceeeeeeecCCCCCCCcceeeeeec-cceEEecCccceeeCcEEEEEEEecCCCCcceEEEecC
Q 004576 20 NRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIH-SCIRVTDNGRESINRKVLFVFTLYNSLDHNEKLKLGAR 98 (744)
Q Consensus 20 ~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~-~~~rVed~Gr~~~~~~~~~v~~~yn~~~~~~~~~~~~~ 98 (744)
.++|+.=+..|||+|=+..|=|=+..+.. ..--..++++ .++.|++..=. ...-..|.|.++ .+.+.+.|.
T Consensus 11 ~K~~rk~~~~R~ffLFnD~LvY~~~~~~~--~~~~~~~~i~L~~~~v~~~~d~---~~~~n~f~I~~~---~kSf~v~A~ 82 (104)
T cd01218 11 TKMCRKKPKQRQFFLFNDILVYGNIVISK--KKYNKQHILPLEGVQVESIEDD---GIERNGWIIKTP---TKSFAVYAA 82 (104)
T ss_pred EEeecCCCceEEEEEecCEEEEEEeecCC--ceeeEeeEEEccceEEEecCCc---ccccceEEEecC---CeEEEEEcC
Confidence 46778888889999998888553333332 1233345555 55666632100 112234666664 568899999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 004576 99 SPEEAAKWIRSLQEAAVK 116 (744)
Q Consensus 99 ~~eea~~w~~~~~~a~~~ 116 (744)
|++|-..|+++|++||++
T Consensus 83 s~~eK~eWl~~i~~ai~~ 100 (104)
T cd01218 83 TETEKREWMLHINKCVTD 100 (104)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999999986
No 84
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=93.95 E-value=1.3 Score=41.94 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=31.3
Q ss_pred eEEEEEEecCCHHHHHHHHHcCCCCccccccccceeEEE
Q 004576 203 AIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVV 241 (744)
Q Consensus 203 ~~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vV 241 (744)
.+....+|++|+++||+++.|... .++|++.+.....+
T Consensus 3 ~~~~s~~I~ap~e~V~~~i~D~~~-~~~W~p~~~~~~~~ 40 (150)
T cd07818 3 RVERSIVINAPPEEVFPYVNDLKN-WPEWSPWEKLDPDM 40 (150)
T ss_pred EEEEEEEEeCCHHHHHHHHhCccc-CcccCchhhcCcce
Confidence 356678899999999999999984 89999977765444
No 85
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=93.53 E-value=4.3 Score=37.43 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=33.9
Q ss_pred EEEEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEec
Q 004576 204 IMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHL 244 (744)
Q Consensus 204 ~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~I 244 (744)
+..+..|+||+++|++++.|... .++|.+.+..++++...
T Consensus 3 ~~~~~~i~Ap~~~Vw~~~~d~~~-~~~w~~~~~~~~~~~~~ 42 (138)
T cd08862 3 FEATIVIDAPPERVWAVLTDVEN-WPAWTPSVETVRLEGPP 42 (138)
T ss_pred EEEEEEEcCCHHHHHHHHHhhhh-cccccCcceEEEEecCC
Confidence 55678899999999999999884 88999998888776643
No 86
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.10 E-value=2.1 Score=40.05 Aligned_cols=98 Identities=14% Similarity=0.189 Sum_probs=70.2
Q ss_pred eeeEEEEEeecccccccccceeeEeeceeeeeeecCCCCCCCcceeeeeec-cceEEec--Ccccee-eCcEEEEEEEec
Q 004576 10 IEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIH-SCIRVTD--NGRESI-NRKVLFVFTLYN 85 (744)
Q Consensus 10 ~~gWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~-~~~rVed--~Gr~~~-~~~~~~v~~~yn 85 (744)
|+|=|.+++.++. ..+-|+|+|=++.|=+=|++-. .+..-.-++.|+ ..+.|+| .|++.. +...=.-|.|||
T Consensus 4 ~~Gel~~~s~~~g---~~q~R~~FLFD~~LI~CKkd~~-r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~ 79 (109)
T cd01224 4 LQGEATRQKQNKG---WNSSRVLFLFDHQMVLCKKDLI-RRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYS 79 (109)
T ss_pred EeeeEEEEecccC---CcccEEEEEecceEEEEecccc-cCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEEE
Confidence 5666666653321 2457999999999988886533 345666777776 7778885 676663 234567889999
Q ss_pred CCCCcceEEEecCCHHHHHHHHHHHHH
Q 004576 86 SLDHNEKLKLGARSPEEAAKWIRSLQE 112 (744)
Q Consensus 86 ~~~~~~~~~~~~~~~eea~~w~~~~~~ 112 (744)
... ..-+.+-|.|+|+-.+|++||..
T Consensus 80 ~~~-~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 80 EST-DEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred cCC-CeEEEEEECCHHHHHHHHHHHHH
Confidence 854 45579999999999999997754
No 87
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=92.82 E-value=5.4 Score=38.19 Aligned_cols=114 Identities=11% Similarity=-0.007 Sum_probs=69.2
Q ss_pred EEEecCCHHHHHHHHHcCCCCccccccccceeEEEEecCCcEEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEEEE
Q 004576 207 VGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYVIL 286 (744)
Q Consensus 207 ~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~~dGsyvI~ 286 (744)
.-.|++++++|+++|.|+ ..|-.++..++.++.++ +.--.-.+.+ . ++++.+=-..++....++...+.+.
T Consensus 2 s~~v~a~~~~vw~~l~D~----~~l~~ciPG~~~~e~~~-~~~~~~~~v~--v--G~i~~~~~g~~~~~~~~~~~~~~~~ 72 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLSDP----ENLARCIPGVESIEKVG-DEYKGKVKVK--V--GPIKGTFDGEVRITEIDPPESYTLE 72 (140)
T ss_dssp EEEECS-HHHHHHHHT-H----HHHHHHSTTEEEEEEEC-TEEEEEEEEE--S--CCCEEEEEEEEEEEEEETTTEEEEE
T ss_pred cEEecCCHHHHHHHhcCH----HHHHhhCCCcEEeeecC-cEEEEEEEEE--e--ccEEEEEEEEEEEEEcCCCcceEee
Confidence 457899999999999984 47889999999999998 5432222222 1 3454433333444444455555444
Q ss_pred EeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceEEEEEEEEeCCcccccc
Q 004576 287 YHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYL 339 (744)
Q Consensus 287 ~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~VTyi~qvDpkGwiP~~ 339 (744)
...-.. .+-+.+... -.+...+++. |+|+|-..++..|.+...
T Consensus 73 ~~g~g~------~~~~~~~~~---~~~~~~~~~~-T~v~~~~~~~~~G~la~~ 115 (140)
T PF06240_consen 73 FEGRGR------GGGSSASAN---ITLSLEDDGG-TRVTWSADVEVGGPLASL 115 (140)
T ss_dssp EEEEEC------TCCEEEEEE---EEEEECCCTC-EEEEEEEEEEEECHHHHC
T ss_pred eeccCC------ccceEEEEE---EEEEcCCCCC-cEEEEEEEEEEccCHHHh
Confidence 333321 222333322 2234444444 999999999999999864
No 88
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=92.12 E-value=1 Score=42.54 Aligned_cols=90 Identities=14% Similarity=0.236 Sum_probs=60.9
Q ss_pred ccceeeEeeceeeeeeecCCCC--CCCcceeeeeeccceEEecCcccee---eCcEEEEEEEecCCCCcceEEEecCCHH
Q 004576 27 SRKRYFILLDNCLNGYKMVPSS--EKEEPVKSAMIHSCIRVTDNGRESI---NRKVLFVFTLYNSLDHNEKLKLGARSPE 101 (744)
Q Consensus 27 ~~~ry~vl~~~~~~~yKr~P~~--~~~~pi~~~ii~~~~rVed~Gr~~~---~~~~~~v~~~yn~~~~~~~~~~~~~~~e 101 (744)
++-||.+|=++.|=.=|+.-.. .++--.|.++.=..++|+++..... ..+--|.|-+-.+.+ ...+++.|.|+|
T Consensus 20 ~k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~~~-~~~~~f~~Ktee 98 (116)
T cd01223 20 TKLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHKQG-KTGFTFYFKTEH 98 (116)
T ss_pred CceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEecCC-CccEEEEeCCHH
Confidence 6799999999999888844222 1233445555557777886532222 123445555555544 344799999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 004576 102 EAAKWIRSLQEAAVKE 117 (744)
Q Consensus 102 ea~~w~~~~~~a~~~~ 117 (744)
+-.+||+||+-|+...
T Consensus 99 ~K~kWm~al~~a~sni 114 (116)
T cd01223 99 LRKKWLKALEMAMSNI 114 (116)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999998754
No 89
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=91.49 E-value=0.73 Score=43.34 Aligned_cols=99 Identities=25% Similarity=0.312 Sum_probs=52.1
Q ss_pred eeeEEEE---E--eecc---cccccccceeeEeeceeeeeeec--CCCC--CC-------CcceeeeeeccceEEecCcc
Q 004576 10 IEGWLYA---I--LVNR---IGMQISRKRYFILLDNCLNGYKM--VPSS--EK-------EEPVKSAMIHSCIRVTDNGR 70 (744)
Q Consensus 10 ~~gWm~~---~--~~~~---lg~~~~~~ry~vl~~~~~~~yKr--~P~~--~~-------~~pi~~~ii~~~~rVed~Gr 70 (744)
.|||+++ + +..| -.|++ ..=|.||.|..|.+||. .|.. .. ..|+.+..+.+.+--...+-
T Consensus 2 keG~l~RK~~~~~~gkk~~~~~R~W-k~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY 80 (119)
T PF15410_consen 2 KEGILMRKHELESGGKKASRSKRSW-KQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDY 80 (119)
T ss_dssp -EEEEEEEEEEECTTCC---S---E-EEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTB
T ss_pred ceEEEEEEEEEcCCCCCcCCCCCCc-cEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCccc
Confidence 5899999 1 1122 34555 55699999999999994 2222 11 12333344443322223332
Q ss_pred ceeeCcEEEEEEEecCCCCcceEEEecCCHHHHHHHHHHHHHHHH
Q 004576 71 ESINRKVLFVFTLYNSLDHNEKLKLGARSPEEAAKWIRSLQEAAV 115 (744)
Q Consensus 71 ~~~~~~~~~v~~~yn~~~~~~~~~~~~~~~eea~~w~~~~~~a~~ 115 (744)
.+ .+ +||++- ..+...+-|-|.|.+|...|+.+|..+++
T Consensus 81 ~K--r~--~VFrL~--~~dg~e~Lfqa~~~~~m~~Wi~~IN~~AA 119 (119)
T PF15410_consen 81 TK--RK--NVFRLR--TADGSEYLFQASDEEEMNEWIDAINYAAA 119 (119)
T ss_dssp TT--CS--SEEEEE---TTS-EEEEE-SSHHHHHHHHHHHHHH--
T ss_pred cc--CC--eEEEEE--eCCCCEEEEECCCHHHHHHHHHHHhhhcC
Confidence 22 22 345553 23356788999999999999999887753
No 90
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=91.48 E-value=11 Score=34.49 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=29.3
Q ss_pred EEEEEEecCCHHHHHHHHHcCCCCccccccccceeEE
Q 004576 204 IMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCV 240 (744)
Q Consensus 204 ~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~v 240 (744)
+..+.+|++|+++|++.|.|.. ....|...+...+.
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~~-~~~~w~~~~~~~~~ 37 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDFP-SYPEWNPFVRSATG 37 (141)
T ss_pred eEEEEEecCCHHHHHHHHhccc-cccccChhheeEec
Confidence 4567889999999999999988 48899977665444
No 91
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.31 E-value=4.6 Score=38.01 Aligned_cols=98 Identities=17% Similarity=0.219 Sum_probs=61.4
Q ss_pred eeeeEEEEEeecccccccccceeeEeeceeeeeeecCCCC---CC---Ccceeeeeec-cceEEec--CccceeeCcEEE
Q 004576 9 KIEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSS---EK---EEPVKSAMIH-SCIRVTD--NGRESINRKVLF 79 (744)
Q Consensus 9 ~~~gWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~---~~---~~pi~~~ii~-~~~rVed--~Gr~~~~~~~~~ 79 (744)
.+||=|-.+++.+ .-++.|||+|=+..|=+=|++... .| ..---++.++ ..+.|.| .+.+ .-.
T Consensus 5 I~EG~L~ki~~~~---~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~~~-----~kn 76 (112)
T cd01261 5 IMEGTLTRVGPSK---KAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDSSE-----YKN 76 (112)
T ss_pred cccCcEEEEeccc---CCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCCcc-----cCc
Confidence 4788887777654 334689999999998777754321 11 0111233333 4455553 2221 223
Q ss_pred EEEEecCCCCcceEEEecCCHHHHHHHHHHHHHHHHh
Q 004576 80 VFTLYNSLDHNEKLKLGARSPEEAAKWIRSLQEAAVK 116 (744)
Q Consensus 80 v~~~yn~~~~~~~~~~~~~~~eea~~w~~~~~~a~~~ 116 (744)
.|.|.++. ..-+.+-|.|+||-.+||++|..++.+
T Consensus 77 aF~I~~~~--~~s~~l~Akt~eeK~~Wm~~l~~~~~~ 111 (112)
T cd01261 77 AFEIILKD--GNSVIFSAKNAEEKNNWMAALISVQTK 111 (112)
T ss_pred eEEEEcCC--CCEEEEEECCHHHHHHHHHHHHHHhcC
Confidence 45555553 346799999999999999999998764
No 92
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=88.38 E-value=16 Score=33.61 Aligned_cols=137 Identities=7% Similarity=-0.071 Sum_probs=66.6
Q ss_pred EEEEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEecCCcEEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeE
Q 004576 204 IMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTY 283 (744)
Q Consensus 204 ~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~~dGsy 283 (744)
+....+|+||+++||++|.|.+. -+.|.+.....++-...++. ..+.. ... .+........++.+ +.+-
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~~-~~~w~~~~~~~~~~~~~Gg~--~~~~~-~~~---~g~~~~~~~~i~~~--~~~~-- 70 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPEL-LAQWFGPTTTAEMDLRVGGR--WFFFM-TGP---DGEEGWVSGEVLEV--EPPR-- 70 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHHH-HHhhhCcCCceEEcccCCce--EEEEE-ECC---CCCEEeccEEEEEE--cCCC--
Confidence 45567899999999999999874 78998752222222222222 22211 110 11111111112222 2222
Q ss_pred EEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceEEEEEEEEeCCcccccccccchhhHHHHHHHHHHHHHHHHH
Q 004576 284 VILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYLRPSSARSITIRMLERVAALRELFQ 363 (744)
Q Consensus 284 vI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~VTyi~qvDpkGwiP~~~~~~~~~~~~~mL~~va~LRe~~~ 363 (744)
.+..+...-+. | +...+ ...|.++|.++ +|+|++....-+.+- + . ..+...+...+-..+.+||+++.
T Consensus 71 ~i~~~~~~~~~-~---~~~~~---~~~~~~~~~~~--~T~v~~~~~~~~~~~-~-~-~~~~~~~~~~~~~~l~~lk~~~E 138 (139)
T cd07814 71 RLVFTWAFSDE-T---PGPET---TVTVTLEETGG--GTRLTLTHSGFPEED-A-E-QEAREGMEEGWTGTLDRLKALLE 138 (139)
T ss_pred eEEEEecccCC-C---CCCce---EEEEEEEECCC--CEEEEEEEEccChHh-H-H-HHHHhCHhhHHHHHHHHHHHHhh
Confidence 22222222111 1 12222 34688999874 599999877665431 1 0 11222222233345577887764
No 93
>KOG3845 consensus MLN, STAR and related lipid-binding proteins [Lipid transport and metabolism]
Probab=88.08 E-value=0.1 Score=55.22 Aligned_cols=138 Identities=9% Similarity=-0.090 Sum_probs=95.9
Q ss_pred CEEEEeeCCeEEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEecCCcEEEEE
Q 004576 173 WKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVH 252 (744)
Q Consensus 173 W~l~~~~nGVrVy~~~~e~~~~~~~~s~~~~~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~tdIvY 252 (744)
|.+.+..+-+.+..+..+. ..+...++..+..-........+.-+. .+..|+..-.-...++.+..++++..
T Consensus 27 ~s~~k~~~~v~~~~~a~~~-------~~~~i~~v~~~~~lf~~~~~~~i~~~~-~i~~~~~g~~v~~~~~~~~~~~~~~~ 98 (241)
T KOG3845|consen 27 WSVAKTLKLVTVESLAGEK-------PKGNISRVRRFFCLFVTEDLVFISLLW-LIELLQNGPEVYNMLEKIQKNTDIWT 98 (241)
T ss_pred HHHHhhcceeEEeccCCcC-------cCCcccccceeeccccccchheeecch-hhHHHhccchHHHHHHHHHhheeeee
Confidence 6666677777777665443 234455555555433333222222222 23444444355567788888988877
Q ss_pred EEeecCCCCCCCCCceEEEEEEEEEcCCCeEEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCC
Q 004576 253 KLLYSDWLPWGMQRRDLLVRRYWRREDDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQG 319 (744)
Q Consensus 253 ~~~~~~~lp~~vs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~ 319 (744)
..+.. +....+++|+|+...+..+...+......++++++.+++...++|+..+++|++..|++..
T Consensus 99 s~~~~-~~~~i~~~~~~i~~~~v~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~n~~~~~~~~~l~~~ 164 (241)
T KOG3845|consen 99 SEFDS-FNVDIFRPRVFIDSGSVFRLEHMINIPVTTCVSRAFLSAKVILVRGYNHPCGVFCVPLPIE 164 (241)
T ss_pred EecHh-hhhhcccccccCCcceEeehhhccccccceeccchhhcccceeeeccCCcceEEEEEcCCc
Confidence 76554 3345689999999999988877767777888999999999999999999999999999753
No 94
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=85.52 E-value=0.81 Score=50.33 Aligned_cols=100 Identities=25% Similarity=0.411 Sum_probs=64.5
Q ss_pred cccceeeeEEEEEeecccccccccceeeEeec-eeeeeeecCCCCCC--Ccceeeeee-ccceEEecCccceeeCcEEEE
Q 004576 5 RNESKIEGWLYAILVNRIGMQISRKRYFILLD-NCLNGYKMVPSSEK--EEPVKSAMI-HSCIRVTDNGRESINRKVLFV 80 (744)
Q Consensus 5 ~~~~~~~gWm~~~~~~~lg~~~~~~ry~vl~~-~~~~~yKr~P~~~~--~~pi~~~ii-~~~~rVed~Gr~~~~~~~~~v 80 (744)
+..-..|||+-.=|- -=+.+ |.|||+|.. -.+=-||.+|.+.. ..|+-+-.| ++-+|-.|+-|- .+|.|
T Consensus 12 ~~~vvkEgWlhKrGE--~IknW-RpRYF~l~~DG~~~Gyr~kP~~~~~~p~pLNnF~v~~cq~m~~erPrP----ntFii 84 (516)
T KOG0690|consen 12 QEDVVKEGWLHKRGE--HIKNW-RPRYFLLFNDGTLLGYRSKPKEVQPTPEPLNNFMVRDCQTMKTERPRP----NTFII 84 (516)
T ss_pred hhhhHHhhhHhhcch--hhhcc-cceEEEEeeCCceEeeccCCccCCCCcccccchhhhhhhhhhccCCCC----ceEEE
Confidence 333468999976222 11334 899999963 34447999998854 467766666 455666665543 24444
Q ss_pred EEEecCCCCcceE--EEecCCHHHHHHHHHHHHHHHH
Q 004576 81 FTLYNSLDHNEKL--KLGARSPEEAAKWIRSLQEAAV 115 (744)
Q Consensus 81 ~~~yn~~~~~~~~--~~~~~~~eea~~w~~~~~~a~~ 115 (744)
=++-= +-.+ ++.+.++|+-.+|++|+|..+.
T Consensus 85 RcLQW----TTVIERTF~ves~~eRq~W~~AIq~vsn 117 (516)
T KOG0690|consen 85 RCLQW----TTVIERTFYVESAEERQEWIEAIQAVSN 117 (516)
T ss_pred Eeeee----eeeeeeeeecCCHHHHHHHHHHHHHHhh
Confidence 44321 1223 7789999999999999987754
No 95
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=84.88 E-value=9.5 Score=36.66 Aligned_cols=99 Identities=25% Similarity=0.262 Sum_probs=60.2
Q ss_pred eeeEEEEEeeccc----c-cccccceeeEeeceeeeeeecCCCCCCCcceeeeeeccceEEecCcccee---------eC
Q 004576 10 IEGWLYAILVNRI----G-MQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGRESI---------NR 75 (744)
Q Consensus 10 ~~gWm~~~~~~~l----g-~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~~---------~~ 75 (744)
-.|++..+.-++. + +.-.+.|||+|=+..|=|=|++..+ .--|+--.--..+.|++..-... ..
T Consensus 5 K~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~~~--~f~V~dy~~r~~l~V~~~e~~~~~~~~~~~~~~~ 82 (125)
T cd01221 5 KRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKLGS--TFVVFDYAPRSFLRVEKIEPDNQKIPLGSNLVGR 82 (125)
T ss_pred EEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecCCC--eEEEEeeccccceEEeecccccccccccccccCC
Confidence 3567777654432 2 2224568999999988777766522 11111111135666774222111 23
Q ss_pred cEEEEEE-EecCCCCcceEEEecCCHHHHHHHHHHH
Q 004576 76 KVLFVFT-LYNSLDHNEKLKLGARSPEEAAKWIRSL 110 (744)
Q Consensus 76 ~~~~v~~-~yn~~~~~~~~~~~~~~~eea~~w~~~~ 110 (744)
.-+|..+ .-|..++...+.+.|.|.+|-.+|++||
T Consensus 83 ~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al 118 (125)
T cd01221 83 PNLFLLTLLRNADDKQAELLLSADSQSDRERWLSAL 118 (125)
T ss_pred CceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhc
Confidence 3445554 4566788889999999999999999955
No 96
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=84.65 E-value=6.7 Score=38.53 Aligned_cols=115 Identities=16% Similarity=0.133 Sum_probs=73.0
Q ss_pred eEEEEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEecCCcEEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCe
Q 004576 203 AIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGT 282 (744)
Q Consensus 203 ~~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~~dGs 282 (744)
.+.....|..+|+++|+++.|... .++.-+-+...+|+++ +++.-+--.+.. ...=|.--.-|-.. ..+.
T Consensus 3 ~~~~s~lv~y~a~~mF~LV~dV~~-YP~FlP~C~~s~v~~~-~~~~l~A~l~V~------~k~i~e~F~Trv~~--~~~~ 72 (146)
T COG2867 3 QIERTALVPYSASQMFDLVNDVES-YPEFLPWCSASRVLER-NERELIAELDVG------FKGIRETFTTRVTL--KPTA 72 (146)
T ss_pred eeEeeeeccCCHHHHHHHHHHHHh-CchhccccccceEecc-CcceeEEEEEEE------hhheeeeeeeeeee--cCch
Confidence 466778899999999999999984 8999999999999986 444322221111 01111111111111 1122
Q ss_pred EEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceEEEEEEEEeCCccccc
Q 004576 283 YVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLY 338 (744)
Q Consensus 283 yvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~VTyi~qvDpkGwiP~ 338 (744)
-+|..+.++-| .| -+.|+|-+.|+.+. .|+|...+.-+.+..+-.
T Consensus 73 ~~I~~~l~~GP--------Fk--~L~~~W~F~pl~~~-~ckV~f~ldfeF~s~ll~ 117 (146)
T COG2867 73 RSIDMKLIDGP--------FK--YLKGGWQFTPLSED-ACKVEFFLDFEFKSRLLG 117 (146)
T ss_pred hhhhhhhhcCC--------hh--hhcCceEEEECCCC-ceEEEEEEEeeehhHHHH
Confidence 24444444322 22 34679999999654 799999999999987654
No 97
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=84.34 E-value=8.3 Score=36.30 Aligned_cols=102 Identities=20% Similarity=0.319 Sum_probs=58.3
Q ss_pred eeeeEEEEEeeccc--ccccccceeeEeeceeeeeeecCCCCCCCcceeeeeec--cceE---EecCccceeeCcEE-EE
Q 004576 9 KIEGWLYAILVNRI--GMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIH--SCIR---VTDNGRESINRKVL-FV 80 (744)
Q Consensus 9 ~~~gWm~~~~~~~l--g~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~--~~~r---Ved~Gr~~~~~~~~-~v 80 (744)
+|||||-.=..+.. .+.+ ..+|.|+.+.-+-.|-......+..|.- ++| .-+- |+.--.-+...+.+ +|
T Consensus 1 ~lEGwlsvP~~~~~~~k~gW-~r~yvVv~~~Kl~lYd~e~~~~~~~p~~--vldl~~~fhv~~V~asDVi~a~~kDiP~I 77 (112)
T cd01242 1 RMEGWLSLPNRTNKSRKPGW-KKQYVVVSSRKILFYNDEQDKENSTPSM--ILDIDKLFHVRPVTQGDVYRADAKEIPKI 77 (112)
T ss_pred CcceeEEccCCCCccccCCc-eEEEEEEeCCEEEEEecCccccCCCcEE--EEEccceeeeecccHHHeeecCcccCCeE
Confidence 58999977333233 2345 6679999999999998333221122322 222 1111 11100001112222 77
Q ss_pred EEEecCCCCcceEEEecCCHHHHHHHHHHHHHHH
Q 004576 81 FTLYNSLDHNEKLKLGARSPEEAAKWIRSLQEAA 114 (744)
Q Consensus 81 ~~~yn~~~~~~~~~~~~~~~eea~~w~~~~~~a~ 114 (744)
|+|--. +++..+=|=|.|.+|-.+|..|+..-|
T Consensus 78 F~I~~~-~~~~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 78 FQILYA-NEARDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred EEEEeC-CccceEEEEeCCchHHHHHHHHHHHhc
Confidence 777553 446788788889999999999776543
No 98
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=83.92 E-value=8.3 Score=35.90 Aligned_cols=94 Identities=16% Similarity=0.224 Sum_probs=58.8
Q ss_pred eeeEEEEEeecccccccccceeeEee--ceeeeeeecCCCC----CC--CcceeeeeeccceEEecCccceeeCcEEEEE
Q 004576 10 IEGWLYAILVNRIGMQISRKRYFILL--DNCLNGYKMVPSS----EK--EEPVKSAMIHSCIRVTDNGRESINRKVLFVF 81 (744)
Q Consensus 10 ~~gWm~~~~~~~lg~~~~~~ry~vl~--~~~~~~yKr~P~~----~~--~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~ 81 (744)
++||||.-..+.+|-++- +.|+... ++...|---.|.+ .+ ..+.+=.+-.+..|-.|.--+ =|.|
T Consensus 1 k~GYLy~~~k~~~~~~Wv-k~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~l~sc~~r~~~~~dR------RFCF 73 (104)
T cd01249 1 KEGYLYMQEKSKFGGSWT-KYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLTLKSCSRRKTESIDK------RFCF 73 (104)
T ss_pred CCceEEEEcCCCCCCeEE-EEEEEEEcCCcEEEEEecccccccccCcccccceEEeeeeccccccCCccc------eeeE
Confidence 589999977888888885 4344433 3455554433432 11 222233333455555543211 2789
Q ss_pred EEecCCCCcceEEEecCCHHHHHHHHHHHH
Q 004576 82 TLYNSLDHNEKLKLGARSPEEAAKWIRSLQ 111 (744)
Q Consensus 82 ~~yn~~~~~~~~~~~~~~~eea~~w~~~~~ 111 (744)
.|-.+..+ ..++|-|.|.++-..|++|+.
T Consensus 74 ei~~~~~~-~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 74 DVEVEEKP-GVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred eeeecCCC-CeEEEEecCHHHHHHHHHhhc
Confidence 99777664 668999999999999999653
No 99
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=82.64 E-value=11 Score=34.61 Aligned_cols=81 Identities=20% Similarity=0.231 Sum_probs=53.6
Q ss_pred ccceeeEeeceeeeeeecCCCCCCCcceeeeeeccceEEecCccceeeCcEEEEEEEecCCCCcceEEEecCCHHHHHHH
Q 004576 27 SRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSLDHNEKLKLGARSPEEAAKW 106 (744)
Q Consensus 27 ~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~~~~~~~~~~~~~~eea~~w 106 (744)
.+-||++|=.+.+=+=|+... .--.|+-|.=.+++|.|+=.+- . .-|.|-.......++.+-|.|.|+-+.|
T Consensus 16 ~~eR~vFLFe~~ll~~K~~~~---~y~~K~~i~~~~l~i~e~~~~d--~---~~F~v~~~~~p~~~~~l~A~s~e~K~~W 87 (97)
T cd01222 16 GKPRLLFLFQTMLLIAKPRGD---KYQFKAYIPCKNLMLVEHLPGE--P---LCFRVIPFDDPKGALQLTARNREEKRIW 87 (97)
T ss_pred CCceEEEEecccEEEEEecCC---eeEEEEEEEecceEEecCCCCC--C---cEEEEEecCCCceEEEEEecCHHHHHHH
Confidence 456999998888877774332 2334555444778887632111 2 4444433333335889999999999999
Q ss_pred HHHHHHHHH
Q 004576 107 IRSLQEAAV 115 (744)
Q Consensus 107 ~~~~~~a~~ 115 (744)
+++|+.|+.
T Consensus 88 ~~~i~~~i~ 96 (97)
T cd01222 88 TQQLKRAML 96 (97)
T ss_pred HHHHHHHhh
Confidence 999999874
No 100
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=82.61 E-value=48 Score=32.02 Aligned_cols=119 Identities=11% Similarity=0.025 Sum_probs=72.6
Q ss_pred EEEEEEecCCHHHHHHHHHcCCC-CccccccccceeEEEEecCCcEEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCe
Q 004576 204 IMAVGVVDGTSEAIFQTLMSLGS-SRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGT 282 (744)
Q Consensus 204 ~Ka~~vV~aspe~Vf~~L~d~~~-~R~eWD~~~~e~~vVE~ID~~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~~dGs 282 (744)
+..+..|+||+++|++++.+... ....|-+.+.++++++-=++.-.|-..++.+ .. ..+ .+.-|--.. ++..
T Consensus 3 ~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~----~~-~~~-~~kE~l~~~-D~~~ 75 (148)
T cd07816 3 LEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGP----GG-KVK-YVKERIDAV-DEEN 75 (148)
T ss_pred EEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcC----CC-cce-EEEEEEEEE-cccc
Confidence 56778899999999999999863 3467988999999887323333455555432 11 111 121122222 4445
Q ss_pred EEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceEEEEEEEEeCCcc
Q 004576 283 YVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYW 335 (744)
Q Consensus 283 yvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~VTyi~qvDpkGw 335 (744)
..+.++-++-+. +. . .-....+.+.+.|.+++ +|.|+|.+.-++..-
T Consensus 76 ~~~~y~vveg~~-~~-~---~~~~y~~t~~v~~~~~~-~t~v~Wt~~ye~~~~ 122 (148)
T cd07816 76 KTYKYTVIEGDV-LK-D---GYKSYKVEIKFVPKGDG-GCVVKWTIEYEKKGD 122 (148)
T ss_pred cEEEEEEEeccc-cc-C---ceEEEEEEEEEEECCCC-CEEEEEEEEEEECCC
Confidence 666655554221 10 0 12344567778998554 799999999997654
No 101
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=82.34 E-value=35 Score=32.02 Aligned_cols=108 Identities=10% Similarity=0.022 Sum_probs=62.5
Q ss_pred EEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEecCCcE---EEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCe
Q 004576 206 AVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHS---DVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGT 282 (744)
Q Consensus 206 a~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~t---dIvY~~~~~~~lp~~vs~RDFV~lR~wrr~~dGs 282 (744)
.+..|++|+++|++.+.|... -..|.+.+.+++++..-++.. ..++.+... .+.. +...-.....+.+.
T Consensus 3 ~s~~I~ap~e~V~~~~~d~~~-~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~----~~~~---~~w~~~it~~~p~~ 74 (137)
T cd07820 3 RSTVIPAPIEEVFDFHSRPDN-LERLTPPWLEFAVLGRTPGLIYGGARVTYRLRH----FGIP---QRWTTEITEVEPPR 74 (137)
T ss_pred EEEEcCCCHHHHHHHHcCcch-HHhcCCCCCCeEEEecCCCcccCCcEEEEEEEe----cCCc---eEEEEEEEEEcCCC
Confidence 467799999999999999984 899999999999986432221 234434332 1111 11110001112233
Q ss_pred EEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceEEEEEEEEeCCc
Q 004576 283 YVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKY 334 (744)
Q Consensus 283 yvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~VTyi~qvDpkG 334 (744)
. +...++. |-++ .....+.++|.++ +|+||+.+..++.|
T Consensus 75 ~-f~~~~~~--------G~~~--~w~h~~~f~~~~~--gT~vt~~v~~~~p~ 113 (137)
T cd07820 75 R-FVDEQVS--------GPFR--SWRHTHRFEAIGG--GTLMTDRVEYRLPL 113 (137)
T ss_pred e-EEEEecc--------CCch--hCEEEEEEEECCC--ceEEEEEEEEeCCc
Confidence 3 2223331 1111 1122567888765 59999999999853
No 102
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=81.37 E-value=46 Score=30.98 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=25.6
Q ss_pred EEEEEEecCCHHHHHHHHHcCCCCccccccc
Q 004576 204 IMAVGVVDGTSEAIFQTLMSLGSSRSEWDFC 234 (744)
Q Consensus 204 ~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~ 234 (744)
+..+..|+|||+.|+++|.|.. ..++|++.
T Consensus 2 i~~~~~i~ap~e~Vw~~l~d~~-~~~~W~~~ 31 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLADPR-RHPEIDGS 31 (144)
T ss_pred eEEEEEEeCCHHHHHHHHhCcc-ccceeCCC
Confidence 3557789999999999999998 48999863
No 103
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=77.68 E-value=6.5 Score=37.06 Aligned_cols=102 Identities=16% Similarity=0.212 Sum_probs=68.2
Q ss_pred eeeEEEEEeecccccccccceeeEeeceeeeeeecCCCCCCCccee-eeeeccceEEecCccceeeCcEEEEEEE-ecCC
Q 004576 10 IEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVK-SAMIHSCIRVTDNGRESINRKVLFVFTL-YNSL 87 (744)
Q Consensus 10 ~~gWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~-~~ii~~~~rVed~Gr~~~~~~~~~v~~~-yn~~ 87 (744)
+|||||. ..-|+.==.+|||||+..=|.|+-.+-+-..-.+.. ...=+.++=..-.|++.+..-.=|.|++ .++.
T Consensus 2 ~~g~Lyl---K~~gkKsWKk~~f~LR~SGLYy~~Kgksk~srdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~~ 78 (114)
T cd01259 2 MEGPLYL---KADGKKSWKKYYFVLRSSGLYYFPKEKTKNTRDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVGD 78 (114)
T ss_pred ccceEEE---ccCCCccceEEEEEEeCCeeEEccCCCcCCHHHHHHHHhcccCcEEEEechhhccCCCCCceEEEecccc
Confidence 6899998 223554458899999999997776553332111111 1112355555557888888888889988 4443
Q ss_pred CC--cceE-EEecCCHHHHHHHHHHHHHHH
Q 004576 88 DH--NEKL-KLGARSPEEAAKWIRSLQEAA 114 (744)
Q Consensus 88 ~~--~~~~-~~~~~~~eea~~w~~~~~~a~ 114 (744)
.. ++-+ -|-|.+++.-..|+.||+-|.
T Consensus 79 q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 79 QSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred CcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 22 4666 566777888889999998774
No 104
>PF15408 PH_7: Pleckstrin homology domain
Probab=77.55 E-value=1.5 Score=39.29 Aligned_cols=91 Identities=20% Similarity=0.291 Sum_probs=55.4
Q ss_pred eeEEEEEeecccccccccceeeEeeceeeeeeecCC-CCCCCcceeeeeeccceEEecCccceeeCc--EEEEEEEecCC
Q 004576 11 EGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVP-SSEKEEPVKSAMIHSCIRVTDNGRESINRK--VLFVFTLYNSL 87 (744)
Q Consensus 11 ~gWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P-~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~--~~~v~~~yn~~ 87 (744)
||.+|+...+.| ++||.||.||.+-||-.+. ..-..--+++-++. +-+|| |-+-.-|- .-|-|-.|..
T Consensus 1 EGYLY~~E~~si-----~rRF~~L~~K~~~~~~~KGG~~L~sF~L~~s~~s-~Pm~~--~~~A~~N~Gi~A~G~L~~~~- 71 (104)
T PF15408_consen 1 EGYLYRDEDSSI-----QRRFVMLRSKQFNMYEDKGGQYLCSFQLSSSVVS-HPMVN--FSQAVPNLGINAFGFLMYSP- 71 (104)
T ss_pred CCeEEEeccchH-----HHHHHhhhhceeEEecccCCceeeeeehhhhhhh-ccccc--ccccCCCCCeeEEEEEEecC-
Confidence 689999777766 7899999999999998333 22112222333322 11232 33333332 2234444444
Q ss_pred CCcceEEEecCCHHHHHHHHHHHH
Q 004576 88 DHNEKLKLGARSPEEAAKWIRSLQ 111 (744)
Q Consensus 88 ~~~~~~~~~~~~~eea~~w~~~~~ 111 (744)
...++++=|.+++--.+|+.++.
T Consensus 72 -~~~~~~~FA~S~~~~~~Wi~~mN 94 (104)
T PF15408_consen 72 -SRRHVQCFASSKKVCQSWIQVMN 94 (104)
T ss_pred -CcchhhhhhhHHHHHHHHHHHhc
Confidence 45677888999999999999554
No 105
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=77.36 E-value=56 Score=32.33 Aligned_cols=111 Identities=14% Similarity=0.018 Sum_probs=64.7
Q ss_pred EEEEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEecCCcEEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeE
Q 004576 204 IMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTY 283 (744)
Q Consensus 204 ~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~~dGsy 283 (744)
|.++-.|.+||++|++.|.|++ +--.++..++-+++.++.. -...+++- ++++ ..|-.--..-.
T Consensus 3 ~~G~f~V~~p~e~Vw~~L~dpe----~~a~ciPG~qs~e~~g~e~-~~~v~l~i----g~l~-~~~~g~~~~~~------ 66 (146)
T COG3427 3 YEGTFRVAAPPEAVWEFLNDPE----QVAACIPGVQSVETNGDEY-TAKVKLKI----GPLK-GTFSGRVRFVN------ 66 (146)
T ss_pred ccceEEecCCHHHHHHHhcCHH----HHHhhcCCcceeeecCCeE-EEEEEEee----ccee-EEEEEEEEEcc------
Confidence 4456678999999999999976 3346788888888887743 33333321 3344 22221111100
Q ss_pred EEEEeccCCCCCCCCCCeEEEEE--------eceeEEEEeCCCCCceEEEEEEEEeCCcccccccc
Q 004576 284 VILYHSVNHKKCPKQKGYVRACL--------KSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYLRP 341 (744)
Q Consensus 284 vI~~~SV~Hp~~Pp~~G~VRa~i--------~~sGwvI~Pl~~~~~c~VTyi~qvDpkGwiP~~~~ 341 (744)
+ .-|+..=.|+|.- ......+.|.+. .|+|+|....|.+|-+-+..+
T Consensus 67 ------v---~~~~~~~~i~g~G~~~~g~~~~~~~v~l~~~g~--gt~v~w~~~~~~gg~laqlGs 121 (146)
T COG3427 67 ------V---DEPPRSITINGSGGGAAGFADGTVDVQLEPSGE--GTRVNWFADANVGGKLAQLGS 121 (146)
T ss_pred ------c---cCCCcEEEEEeecccccceeeeeeEEEEEEcCC--CcEEEEEEEccccHHHHHHhH
Confidence 0 1223333344333 112344555544 499999999999998876533
No 106
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=75.04 E-value=8.7 Score=35.98 Aligned_cols=100 Identities=20% Similarity=0.269 Sum_probs=64.0
Q ss_pred eeEEEE-EeecccccccccceeeEeeceeeeeeecCCCCCC--Ccceeeeee-ccceEEecCc--cceeeCcEEEEEEEe
Q 004576 11 EGWLYA-ILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEK--EEPVKSAMI-HSCIRVTDNG--RESINRKVLFVFTLY 84 (744)
Q Consensus 11 ~gWm~~-~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~--~~pi~~~ii-~~~~rVed~G--r~~~~~~~~~v~~~y 84 (744)
=|||-- +.-+..+.+--+.||++|.|+.+-.|+.-|.+.. .+|.++--+ +.-+||-..| +.. +.+.=++|.+-
T Consensus 2 mGW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~-~~~~~~~F~ir 80 (108)
T cd01258 2 IGWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRL-NDQRDNCFLIR 80 (108)
T ss_pred ceecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCc-CCCCceEEEEE
Confidence 378765 3333444455589999999999999999998753 466555433 4566664322 111 22222566665
Q ss_pred cCCCCcceEEEecCCHHHHHHHHHHHHH
Q 004576 85 NSLDHNEKLKLGARSPEEAAKWIRSLQE 112 (744)
Q Consensus 85 n~~~~~~~~~~~~~~~eea~~w~~~~~~ 112 (744)
=... =..-.|...+..|-+.|.+||++
T Consensus 81 tg~~-vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 81 TGTQ-VENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred cCCc-eeeEEEEecCHHHHHHHHHHHhc
Confidence 4433 12336778999999999997764
No 107
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=73.57 E-value=54 Score=31.46 Aligned_cols=104 Identities=15% Similarity=0.144 Sum_probs=64.7
Q ss_pred eeeeEEEEEeecccccccccceeeEeeceeeeeeecCCCC---CCCcceeeeee-ccceEEec---CccceeeCcE-EEE
Q 004576 9 KIEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSS---EKEEPVKSAMI-HSCIRVTD---NGRESINRKV-LFV 80 (744)
Q Consensus 9 ~~~gWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~---~~~~pi~~~ii-~~~~rVed---~Gr~~~~~~~-~~v 80 (744)
.|||||-.=..++..+.+ ..+|.|+.+.-+-.|-..+.. +...|...+-+ |..+-|-. --.-+...+. =||
T Consensus 3 ~~EGwvkvP~~~~~krGW-~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~I 81 (122)
T cd01243 3 AYEGHVKIPKPGGVKKGW-QRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCI 81 (122)
T ss_pred cceeeEeccCCCCcccCc-eEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCeE
Confidence 599999774444555666 678999999999999833321 22344444444 44444431 1111112223 377
Q ss_pred EEEecCC----CCcceEEEecCCHHHHHHHHHHHHHH
Q 004576 81 FTLYNSL----DHNEKLKLGARSPEEAAKWIRSLQEA 113 (744)
Q Consensus 81 ~~~yn~~----~~~~~~~~~~~~~eea~~w~~~~~~a 113 (744)
|+|--.- -....+=|=|.|..|-.||..|+++.
T Consensus 82 f~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 82 FRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred EEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 7775432 23356677889999999999999875
No 108
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=68.71 E-value=12 Score=42.90 Aligned_cols=93 Identities=20% Similarity=0.332 Sum_probs=58.7
Q ss_pred eeeeEEEEEeecccccccccceeeEeeceeeeeee-cCCCCCCCcceeeee--eccceEE-e--cCccceeeCcEEEEEE
Q 004576 9 KIEGWLYAILVNRIGMQISRKRYFILLDNCLNGYK-MVPSSEKEEPVKSAM--IHSCIRV-T--DNGRESINRKVLFVFT 82 (744)
Q Consensus 9 ~~~gWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yK-r~P~~~~~~pi~~~i--i~~~~rV-e--d~Gr~~~~~~~~~v~~ 82 (744)
.++||++.++... . -..|||.|.+..+.+.. .+|...+..|=...+ |...+=| + ...+ =++|.
T Consensus 378 ~~~G~l~k~~~~~---~-wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~pv~~~~~~~~-------~~~~~ 446 (478)
T PTZ00267 378 THGGYLYKYSSDM---R-WKKRYFYIGNGQLRISLSENPENDGVAPKSVNLETVNDVFPVPEVYSQKH-------PNQLV 446 (478)
T ss_pred ccceEEeccCCCc---c-hhhheEEecCCceEEEeccccccCCCCCccccHHHhcccccccHHhcCCC-------CceEE
Confidence 5899999977644 3 48899999988877754 566554333322222 3333323 1 2211 23344
Q ss_pred EecCCCCcceEEEecCCHHHHHHHHHHHHHHH
Q 004576 83 LYNSLDHNEKLKLGARSPEEAAKWIRSLQEAA 114 (744)
Q Consensus 83 ~yn~~~~~~~~~~~~~~~eea~~w~~~~~~a~ 114 (744)
+.++.+ .++-+.|.|.+|-..|+++|+.|+
T Consensus 447 i~~~~~--~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 447 LWFNNG--QKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred EEecCC--cEEEEecCChHHHHHHHHHHHHHh
Confidence 444443 477777899999999999999884
No 109
>PLN02866 phospholipase D
Probab=67.20 E-value=22 Score=44.95 Aligned_cols=81 Identities=17% Similarity=0.359 Sum_probs=55.3
Q ss_pred cceeeEeeceeeeeeecCCCCCCCcceeeeeecc----------ceEEecCccceeeCcEEEEEEEecCCCCcceEEEec
Q 004576 28 RKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHS----------CIRVTDNGRESINRKVLFVFTLYNSLDHNEKLKLGA 97 (744)
Q Consensus 28 ~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~----------~~rVed~Gr~~~~~~~~~v~~~yn~~~~~~~~~~~~ 97 (744)
.+|||||+..+|.|.+ +|.+. .|..=.++|. .+.+.+...++ +..=|-|+|-| -+++++|.|
T Consensus 219 ~k~w~v~k~~~l~~~~-~p~~~--~~~~v~lfD~~~~~~~~~~~~~~~~~~~k~~--~~~~~~~~i~~---~~r~l~l~~ 290 (1068)
T PLN02866 219 QKVWAVLKPGFLALLE-DPFDA--KPLDIIVFDVLPASNGNGEGQISLAKEIKER--NPLRFGFKVTC---GNRSIRLRT 290 (1068)
T ss_pred heeEEEEeccEEEEEe-cCCCC--ceeEEEEEecccccccCCCcceeeccccccc--CCCcceEEEec---CceEEEEEE
Confidence 5699999999997765 57653 4666666663 22332222122 22334566644 367799999
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 004576 98 RSPEEAAKWIRSLQEAAVK 116 (744)
Q Consensus 98 ~~~eea~~w~~~~~~a~~~ 116 (744)
.|..+++.|+.++++|..+
T Consensus 291 ~s~~~~~~w~~ai~~~~~~ 309 (1068)
T PLN02866 291 KSSAKVKDWVAAINDAGLR 309 (1068)
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999754
No 110
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=66.01 E-value=39 Score=31.92 Aligned_cols=78 Identities=21% Similarity=0.456 Sum_probs=54.1
Q ss_pred ccccceeeEeeceeeeeeecCCCC-----CCCcceeeeeeccceEEecCccceeeCcEEEEEEEecCCCCcceEEEecCC
Q 004576 25 QISRKRYFILLDNCLNGYKMVPSS-----EKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSLDHNEKLKLGARS 99 (744)
Q Consensus 25 ~~~~~ry~vl~~~~~~~yKr~P~~-----~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~~~~~~~~~~~~~ 99 (744)
+=-+.|||||=...|-|....|.. .|..|++.+.|+. .||. ..+..+ |.|--.. -.++.+-|.+
T Consensus 26 qe~~eRyLvLFp~~LlilS~s~r~sGf~yqGkLPL~~i~v~~---lEd~---e~~~~a---FeI~G~l--i~~i~v~C~~ 94 (111)
T cd01225 26 EEKRERYLVLFPNVLLMLSASPRMSGFIYQGKLPLTGIIVTR---LEDT---EALKNA---FEISGPL--IERIVVVCNN 94 (111)
T ss_pred cccceeEEEEcCceEEEEEcCCCccceEEeeeecccccEEec---hHhc---cCccce---EEEeccC--cCcEEEEeCC
Confidence 334889999999999999998855 3467777776653 2220 122334 4443222 3678888999
Q ss_pred HHHHHHHHHHHHHH
Q 004576 100 PEEAAKWIRSLQEA 113 (744)
Q Consensus 100 ~eea~~w~~~~~~a 113 (744)
.+|..+|++-|+.-
T Consensus 95 ~~e~~~Wl~hL~~~ 108 (111)
T cd01225 95 PQDAQEWVELLNAN 108 (111)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999977653
No 111
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=64.99 E-value=12 Score=34.86 Aligned_cols=98 Identities=21% Similarity=0.369 Sum_probs=57.1
Q ss_pred eeeeEEEEEeecccccccccceeeEeecee-----eeeeecCCCCCCC-cceeeeeeccceEEe-c--CccceeeCcEEE
Q 004576 9 KIEGWLYAILVNRIGMQISRKRYFILLDNC-----LNGYKMVPSSEKE-EPVKSAMIHSCIRVT-D--NGRESINRKVLF 79 (744)
Q Consensus 9 ~~~gWm~~~~~~~lg~~~~~~ry~vl~~~~-----~~~yKr~P~~~~~-~pi~~~ii~~~~rVe-d--~Gr~~~~~~~~~ 79 (744)
.++|||+..|.+..= .+ .+|||||.+-+ +..|+.+-+++.+ .-+-.-.||=+=-.. + -|.+-- |..+|
T Consensus 3 k~sGyL~k~Gg~~~K-kW-KKRwFvL~qvsQYtfamcsy~ekks~P~e~~qldGyTvDy~~~~~~~~~~~~~~~-gg~~f 79 (117)
T cd01234 3 KHCGYLYAIGKNVWK-KW-KKRFFVLVQVSQYTFAMCSYREKKAEPTEFIQLDGYTVDYMPESDPDPNSELSLQ-GGRHF 79 (117)
T ss_pred ceeEEEEeccchhhh-hh-heeEEEEEchhHHHHHHHhhhhhcCCchhheeecceEEeccCCCCCCcccccccc-cchhh
Confidence 489999998775543 34 79999999754 2345533333211 111222222110000 0 112222 33332
Q ss_pred EEEEecCCCCcceEEEecCCHHHHHHHHHHHHHH
Q 004576 80 VFTLYNSLDHNEKLKLGARSPEEAAKWIRSLQEA 113 (744)
Q Consensus 80 v~~~yn~~~~~~~~~~~~~~~eea~~w~~~~~~a 113 (744)
+|.-.+.+.+.+|+....|---|+.|+=.|
T Consensus 80 ----f~avkegd~~~fa~~de~~r~lwvqa~yra 109 (117)
T cd01234 80 ----FNAVKEGDELKFATDDENERHLWVQAMYRA 109 (117)
T ss_pred ----hheeccCcEEEEeccchHHHHHHHHHHHHH
Confidence 466677899999999999999999977766
No 112
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=64.73 E-value=1.1e+02 Score=31.55 Aligned_cols=134 Identities=15% Similarity=0.109 Sum_probs=83.5
Q ss_pred eEEEEEEecCCHHHHHHHHHcCCCCccccccccceeEEEEecCCcEEEEEEEeecCCCCCCCCCceEEEEEEEEEc----
Q 004576 203 AIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRRE---- 278 (744)
Q Consensus 203 ~~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~---- 278 (744)
......+|+.|+++|+++..|++ ..+.|.+++.+.+|+ |++- -+++... |. -..-.|.-+
T Consensus 71 ~v~~~V~I~kPae~vy~~W~dLe-~lP~~Mkhl~SVkVl---ddkr--SrW~~~a---p~-------g~~v~Wea~it~d 134 (217)
T COG5637 71 EVEVQVTIDKPAEQVYAYWRDLE-NLPLWMKHLDSVKVL---DDKR--SRWKANA---PL-------GLEVEWEAEITKD 134 (217)
T ss_pred EEEEEEEeCChHHHHHHHHHhhh-hhhHHHHhhceeecc---CCCc--cceeEcC---CC-------CceEEEeehhhcc
Confidence 34455678999999999999998 499999988876665 4443 3333322 11 112245432
Q ss_pred CCCeEEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceEEEEEEEEeCCcccccc-cc-cchhhHHHHHHHHHH
Q 004576 279 DDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYL-RP-SSARSITIRMLERVA 356 (744)
Q Consensus 279 ~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~VTyi~qvDpkGwiP~~-~~-~~~~~~~~~mL~~va 356 (744)
..| =+|.-.|++-..+| ..|.|| +.+..+. +|.|...+.-.+=||.-.- .+ .|+..--.++-+-+.
T Consensus 135 ~~~-e~I~W~Sl~Ga~v~-NsG~Vr---------F~~~pg~-~t~V~v~lsY~~Pgg~~~a~va~~fgeepeqqI~~DL~ 202 (217)
T COG5637 135 IPG-ERIQWESLPGARVE-NSGAVR---------FYDAPGD-STEVKVTLSYRPPGGLLGAVVAKLFGEEPEQQIQDDLE 202 (217)
T ss_pred CCC-cEEeeecCCCCcCC-CCccEE---------eeeCCCC-ceEEEEEEEecCCccHHHHHHHHHhccchHHHHHHHHH
Confidence 222 46888888654454 577777 4555553 5788888888877765431 22 233333334556777
Q ss_pred HHHHHHHh
Q 004576 357 ALRELFQA 364 (744)
Q Consensus 357 ~LRe~~~~ 364 (744)
.+|+++..
T Consensus 203 RFk~~~e~ 210 (217)
T COG5637 203 RFKEYQEN 210 (217)
T ss_pred HHHHHHHc
Confidence 88888765
No 113
>TIGR01599 PYST-A Plasmodium yoelii subtelomeric family PYST-A. A single high-scoring gene was identified in the complete genome of P. falciparum as well as a single gene from P. chaboudi from GenBank which were included in the seed. There are no obvious homologs to these genes in any non-Plasmodium organism. These observations suggest an expansion of this family in yoelii from a common Plasmodium ancestor gene (present in a single copy in falciparum).
Probab=61.71 E-value=2.1e+02 Score=29.94 Aligned_cols=119 Identities=14% Similarity=0.146 Sum_probs=79.4
Q ss_pred ceEEEEEEecC--CHHHHHHHHHcCCCCccccccccceeEEEEecCCcEEEEEEEeecCCCCCCCCCceEEE-EEEEEEc
Q 004576 202 PAIMAVGVVDG--TSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLV-RRYWRRE 278 (744)
Q Consensus 202 ~~~Ka~~vV~a--spe~Vf~~L~d~~~~R~eWD~~~~e~~vVE~ID~~tdIvY~~~~~~~lp~~vs~RDFV~-lR~wrr~ 278 (744)
.+-|..-.|.- .-.+|...|+|.+. -...|..+..++++...+++..+++++++.. ..+++-+.+ |-.--+.
T Consensus 59 dI~K~~~~I~~pnkYneIIN~LWdpn~-~~~fn~~~ikgki~RvYnpNLvmiqqry~~~----~~~~~~YfyaLa~Kv~i 133 (208)
T TIGR01599 59 IIGKIHLTIQDPNKYDAIIKTLWDFND-NKKFGRKFIKGKVVRVYSPNLIMIQQRYKDA----SGSPNKYFYALATKVKV 133 (208)
T ss_pred EEEEEEEEecCchhHHHHHHHHhcccc-ccCCCchheeeeEEEEeCCCeEEEEeecCCC----CCCcceEEeEeeeeeec
Confidence 45677777754 47899999999984 6789999999999999999999999886642 233334443 3333333
Q ss_pred CCCeEEEEEeccCCCCCCC--CCC--------------------------eEEEEEeceeEEEEeCCCCCceEEEEE
Q 004576 279 DDGTYVILYHSVNHKKCPK--QKG--------------------------YVRACLKSGGFVITPSNQGKQSIVKHM 327 (744)
Q Consensus 279 ~dGsyvI~~~SV~Hp~~Pp--~~G--------------------------~VRa~i~~sGwvI~Pl~~~~~c~VTyi 327 (744)
..++-+|++.|..-.+.-+ ++. .-...+..+||+|..-.+ .-.|||+
T Consensus 134 Sed~TiIv~~S~~ind~n~~~~~~~~n~iv~san~f~~~idse~dir~g~l~k~fvNl~G~~IkK~~d--~v~iTyi 208 (208)
T TIGR01599 134 SEDTTIIACTSANINDHNKVDKKNFKNKIIESANSFKTDIDSEEDIRNGELKKMFVNLSGFIIKKKDD--NIDITYV 208 (208)
T ss_pred CCCcEEEEEeccccccCCccccccccceeeeecccccCccCHHHHHHhhhhhheEEeeEEEEEEecCC--cEEEEEC
Confidence 4556778888875433211 111 122345678999988654 4677774
No 114
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=53.17 E-value=29 Score=41.00 Aligned_cols=93 Identities=26% Similarity=0.371 Sum_probs=62.4
Q ss_pred eeeeEEEEEeecccccccccceeeEeeceeeeeee---cCCCCCCCcceeeeeec-cceEEe--cCccceeeCcEEEEEE
Q 004576 9 KIEGWLYAILVNRIGMQISRKRYFILLDNCLNGYK---MVPSSEKEEPVKSAMIH-SCIRVT--DNGRESINRKVLFVFT 82 (744)
Q Consensus 9 ~~~gWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yK---r~P~~~~~~pi~~~ii~-~~~rVe--d~Gr~~~~~~~~~v~~ 82 (744)
.-||=++.|.++ ..-+..||++|=+..+-|=| +.|-+. ==-+++++ .|+-|- +++- -++.|++=
T Consensus 273 iKEG~l~Kis~k---~~~~qeRylfLFNd~~lyc~~r~~~~~~k---~~~r~~~s~~~~~v~~~~~~~---~~~tF~~~- 342 (623)
T KOG4424|consen 273 IKEGQLQKISAK---NGTTQERYLFLFNDILLYCKPRKRLPGSK---YEVRARCSISHMQVQEDDNEE---LPHTFILT- 342 (623)
T ss_pred hhccceeeeecc---CCCcceeEEEEehhHHHhhhhhhhcccce---eccceeeccCcchhccccccc---CCceEEEe-
Confidence 568999999887 56778999999987775555 333332 11223332 222222 2321 23445543
Q ss_pred EecCCCCcceEEEecCCHHHHHHHHHHHHHHHHh
Q 004576 83 LYNSLDHNEKLKLGARSPEEAAKWIRSLQEAAVK 116 (744)
Q Consensus 83 ~yn~~~~~~~~~~~~~~~eea~~w~~~~~~a~~~ 116 (744)
++.+-+++.+.|.+|...|+.+|++||+.
T Consensus 343 -----G~~r~vel~a~t~~ek~eWv~~I~~~Id~ 371 (623)
T KOG4424|consen 343 -----GKKRGVELQARTEQEKKEWVQAIQDAIDK 371 (623)
T ss_pred -----cccceEEeecCchhhHHHHHHHHHHHHHH
Confidence 36788899999999999999999999985
No 115
>PLN02647 acyl-CoA thioesterase
Probab=52.52 E-value=30 Score=39.95 Aligned_cols=86 Identities=12% Similarity=0.075 Sum_probs=58.9
Q ss_pred EeecccccccccceeeEeeceeeeeee-cCCCCCCCcceeeeeec---------------cceEEec--CccceeeCcEE
Q 004576 17 ILVNRIGMQISRKRYFILLDNCLNGYK-MVPSSEKEEPVKSAMIH---------------SCIRVTD--NGRESINRKVL 78 (744)
Q Consensus 17 ~~~~~lg~~~~~~ry~vl~~~~~~~yK-r~P~~~~~~pi~~~ii~---------------~~~rVed--~Gr~~~~~~~~ 78 (744)
+.+.++++..|.. .+++... ..|...|+....++-|. +.+.|++ .|-+.+.+..+
T Consensus 323 i~A~r~a~~~~vt-------~svd~v~F~~PV~vGdil~l~A~V~yt~~~s~g~~~i~veV~v~v~~~~~~~~~~~n~~~ 395 (437)
T PLN02647 323 STAYAFAGLRPYF-------LEVDHVDFLRPVDVGDFLRFKSCVLYTELENSEQPLINVEVVAHVTRPELRSSEVSNTFY 395 (437)
T ss_pred HHHHHHcCCceEE-------EEecceEecCccccCcEEEEEEEEEEEeEEecCceEEEEEEEEEEEcCCCCcceEEEEEE
Confidence 3345555544444 4555555 67999888776555442 2233433 45556888999
Q ss_pred EEEEEecC--CCCcceE-EEecCCHHHHHHHHHH
Q 004576 79 FVFTLYNS--LDHNEKL-KLGARSPEEAAKWIRS 109 (744)
Q Consensus 79 ~v~~~yn~--~~~~~~~-~~~~~~~eea~~w~~~ 109 (744)
|+|.+-+. .+++.++ ++-+.|.||+++|.+.
T Consensus 396 fTfva~d~~~~g~p~~Vp~V~P~T~eE~~~~~e~ 429 (437)
T PLN02647 396 FTFTVRPEAAMKNGFKIRNVVPATEEEARRILER 429 (437)
T ss_pred EEEEEeccccCCCCccCCeeecCCHHHHHHHHHh
Confidence 99999876 5567777 9999999999999883
No 116
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=48.01 E-value=20 Score=35.82 Aligned_cols=96 Identities=15% Similarity=0.198 Sum_probs=68.1
Q ss_pred eeeeEEEE-------EeecccccccccceeeEeeceeeeeee-cCCCCCCCcceeeeeec--------cceEEe--c--C
Q 004576 9 KIEGWLYA-------ILVNRIGMQISRKRYFILLDNCLNGYK-MVPSSEKEEPVKSAMIH--------SCIRVT--D--N 68 (744)
Q Consensus 9 ~~~gWm~~-------~~~~~lg~~~~~~ry~vl~~~~~~~yK-r~P~~~~~~pi~~~ii~--------~~~rVe--d--~ 68 (744)
.+-|||-. |.+.++++.++-+ -+++--- ..|...|+....-|-|. .+++|- + .
T Consensus 31 ifGG~lm~~mD~~a~i~A~~~a~~~vVT-------asvd~v~F~~Pv~vGd~v~~~a~v~~~GrTSm~V~Vev~~~~~~~ 103 (157)
T COG1607 31 IFGGWLLSWMDLAAAIAASRHAGGRVVT-------ASVDSVDFKKPVRVGDIVCLYARVVYTGRTSMEVGVEVWAEDIRS 103 (157)
T ss_pred cccHHHHHHHHHHHHHHHHHHhCCeEEE-------EEeceEEEccccccCcEEEEEEEEeecCcccEEEEEEEEEecccC
Confidence 45666665 6778888777766 4444333 57988887666666553 223332 2 4
Q ss_pred ccceeeCcEEEEEEEecCCCCcceE-EEecCCHHHHHHHHHHHH
Q 004576 69 GRESINRKVLFVFTLYNSLDHNEKL-KLGARSPEEAAKWIRSLQ 111 (744)
Q Consensus 69 Gr~~~~~~~~~v~~~yn~~~~~~~~-~~~~~~~eea~~w~~~~~ 111 (744)
|-..+-.+++|+|-..|..+++..+ ...+.+.+|.+++-.|.+
T Consensus 104 ~~~~~~t~~~ft~VAvd~~gkP~~vp~~~~~~~~e~~~~~~A~~ 147 (157)
T COG1607 104 GERRLATSAYFTFVAVDEDGKPTPVPREEPETEEEKRRYAAAGA 147 (157)
T ss_pred CcceEeeeEEEEEEEECCCCCcccCCccCCccHHHHhhhhhhHH
Confidence 5555667899999999999999988 888999999888877544
No 117
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=47.58 E-value=25 Score=42.45 Aligned_cols=95 Identities=25% Similarity=0.343 Sum_probs=64.5
Q ss_pred eeeeEEEE--EeecccccccccceeeEeeceeeeeeecCCCCC--CCcceeeeeeccceEE-ecCccceeeCcEEEEEEE
Q 004576 9 KIEGWLYA--ILVNRIGMQISRKRYFILLDNCLNGYKMVPSSE--KEEPVKSAMIHSCIRV-TDNGRESINRKVLFVFTL 83 (744)
Q Consensus 9 ~~~gWm~~--~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~--~~~pi~~~ii~~~~rV-ed~Gr~~~~~~~~~v~~~ 83 (744)
.-+|-|++ =|+-++|..+.-+|||-|-+..|.|=| .|+.. ..+|+. |+|. |..--+.+.++-+|- -|
T Consensus 566 ~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~K-sp~~q~~~~Ipl~------nI~avEklee~sF~~knv~q-VV 637 (800)
T KOG2059|consen 566 LKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAK-SPGKQPIYTIPLS------NIRAVEKLEEKSFKMKNVFQ-VV 637 (800)
T ss_pred ecccceEeccccccchhhhhhhheEEEeccceeEEec-CCccCcccceeHH------HHHHHHHhhhhccCCCceEE-EE
Confidence 45788888 577889988889999999999998777 34332 234443 3432 322333444443332 24
Q ss_pred ecCCCCcceEEEecCCHHHHHHHHHHHHHHHH
Q 004576 84 YNSLDHNEKLKLGARSPEEAAKWIRSLQEAAV 115 (744)
Q Consensus 84 yn~~~~~~~~~~~~~~~eea~~w~~~~~~a~~ 115 (744)
|+. +++-+-|.+.-||..|..+++.+..
T Consensus 638 ~~d----rtly~Q~~n~vEandWldaL~kvs~ 665 (800)
T KOG2059|consen 638 HTD----RTLYVQAKNCVEANDWLDALRKVSC 665 (800)
T ss_pred ecC----cceeEecCCchHHHHHHHHHHHHhc
Confidence 444 4888999999999999997776643
No 118
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=44.01 E-value=1.8e+02 Score=27.39 Aligned_cols=88 Identities=18% Similarity=0.295 Sum_probs=55.3
Q ss_pred cccccceeeEeeceeeeeee-cCCCCCCCcc--eeeeeeccceEEecCccceeeCcEEEEEEEecCCC--CcceEEEecC
Q 004576 24 MQISRKRYFILLDNCLNGYK-MVPSSEKEEP--VKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSLD--HNEKLKLGAR 98 (744)
Q Consensus 24 ~~~~~~ry~vl~~~~~~~yK-r~P~~~~~~p--i~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~~--~~~~~~~~~~ 98 (744)
+.-++.|.++|=.+.|=+=| +.++.....| +.+. .+.+.+.|.+-+.++.=.-|.+..+.. ..+.+.+-|.
T Consensus 21 ~~K~~eR~vFLFe~~lvfsk~~~~~~~~~~~~Y~yK~----~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~ 96 (114)
T cd01232 21 IQKGRERRVFLFEQSIIFAKEVKKKKQFGNPKYIYKS----KLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKAN 96 (114)
T ss_pred cCCCceeEEEEeeceEEEEEEeccCCCCCceeEEEec----ceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEECC
Confidence 46678888888888876666 3333211122 2233 333444444444444445566655554 3577899999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 004576 99 SPEEAAKWIRSLQEAAV 115 (744)
Q Consensus 99 ~~eea~~w~~~~~~a~~ 115 (744)
|+|+-..|+..+.++.+
T Consensus 97 s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 97 SQETKQEWVKKIREILQ 113 (114)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999988764
No 119
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=40.51 E-value=1.3e+02 Score=28.05 Aligned_cols=85 Identities=22% Similarity=0.352 Sum_probs=49.8
Q ss_pred eeeeEEEEEeecccccccccceeeEeece-eeeeeecCCCCCCCcceeeeee--ccceEEecCccceeeCcEEEEEEEec
Q 004576 9 KIEGWLYAILVNRIGMQISRKRYFILLDN-CLNGYKMVPSSEKEEPVKSAMI--HSCIRVTDNGRESINRKVLFVFTLYN 85 (744)
Q Consensus 9 ~~~gWm~~~~~~~lg~~~~~~ry~vl~~~-~~~~yKr~P~~~~~~pi~~~ii--~~~~rVed~Gr~~~~~~~~~v~~~yn 85 (744)
.++|-+..- + |. +.++|-|+|.+. .|-|+. |.. -+.+|-| ...++|+- -+.+.|+|-+
T Consensus 14 l~~g~v~K~--k--gl-~~kkR~liLTd~PrL~Yvd--p~~----~~~KGeI~~~~~l~v~~-----k~~~~F~I~t--- 74 (104)
T PF14593_consen 14 LKQGYVKKR--K--GL-FAKKRQLILTDGPRLFYVD--PKK----MVLKGEIPWSKELSVEV-----KSFKTFFIHT--- 74 (104)
T ss_dssp EEEEEEEEE--E--TT-EEEEEEEEEETTTEEEEEE--TTT----TEEEEEE--STT-EEEE-----CSSSEEEEEE---
T ss_pred EEEEEEEEe--e--ce-EEEEEEEEEccCCEEEEEE--CCC----CeECcEEecCCceEEEE-----ccCCEEEEEC---
Confidence 577877772 2 22 379999999887 555554 543 2345666 36778883 2333343322
Q ss_pred CCCCcceEEEecCCHHHHHHHHHHHHHHHHh
Q 004576 86 SLDHNEKLKLGARSPEEAAKWIRSLQEAAVK 116 (744)
Q Consensus 86 ~~~~~~~~~~~~~~~eea~~w~~~~~~a~~~ 116 (744)
+ .++.-+.. ....|..|.++|+++..+
T Consensus 75 p---~RtY~l~d-~~~~A~~W~~~I~~~~~~ 101 (104)
T PF14593_consen 75 P---KRTYYLED-PEGNAQQWVEAIEEVKKQ 101 (104)
T ss_dssp T---TEEEEEE--TTS-HHHHHHHHHHHHHH
T ss_pred C---CcEEEEEC-CCCCHHHHHHHHHHHHHH
Confidence 1 23333333 556699999999998764
No 120
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=38.35 E-value=16 Score=42.91 Aligned_cols=93 Identities=22% Similarity=0.274 Sum_probs=62.2
Q ss_pred EeecccccccccceeeEeeceeeeeee-cCCCCCCCcceeeeeeccceE-EecCccceeeCcEEEEEEEecCCCCcceEE
Q 004576 17 ILVNRIGMQISRKRYFILLDNCLNGYK-MVPSSEKEEPVKSAMIHSCIR-VTDNGRESINRKVLFVFTLYNSLDHNEKLK 94 (744)
Q Consensus 17 ~~~~~lg~~~~~~ry~vl~~~~~~~yK-r~P~~~~~~pi~~~ii~~~~r-Ved~Gr~~~~~~~~~v~~~yn~~~~~~~~~ 94 (744)
=|+=|+=+.| +.|||.|.|-.|.|-| .-|.+-++-||-=--|- .+| |...-+.+-..++|=||++= +++-
T Consensus 745 KGrWRf~kRW-~TrYFTLSgA~L~~~kg~s~~dS~~~~IDl~~IR-SVk~v~~kr~~rslpKAFEIFTAD------~T~I 816 (851)
T KOG3723|consen 745 KGRWRFIKRW-KTRYFTLSGAQLLFQKGKSKDDSDDCPIDLSKIR-SVKAVAKKRRDRSLPKAFEIFTAD------KTYI 816 (851)
T ss_pred ccchhhhhhh-ccceEEecchhhhcccCCCCCCCCCCCccHHHhh-hHHHHHhhhhhcccchhhheeecC------ceEE
Confidence 4555666677 8899999999998877 44444333232110010 111 22223445678899999873 3478
Q ss_pred EecCCHHHHHHHHHHHHHHHHhc
Q 004576 95 LGARSPEEAAKWIRSLQEAAVKE 117 (744)
Q Consensus 95 ~~~~~~eea~~w~~~~~~a~~~~ 117 (744)
+.|.+.--|+.|.+.++=|++++
T Consensus 817 LKaKDeKNAEEWlqCL~IavAHa 839 (851)
T KOG3723|consen 817 LKAKDEKNAEEWLQCLNIAVAHA 839 (851)
T ss_pred eecccccCHHHHHHHHHHHHHHH
Confidence 88999999999999999998864
No 121
>PLN02647 acyl-CoA thioesterase
Probab=31.01 E-value=1.8e+02 Score=33.75 Aligned_cols=69 Identities=14% Similarity=0.169 Sum_probs=50.6
Q ss_pred CCCCCCCcceeeeeec--------cceEEe--c----CccceeeCcEEEEEEEecC-CCCcceE-EEecCCHHHHHHHHH
Q 004576 45 VPSSEKEEPVKSAMIH--------SCIRVT--D----NGRESINRKVLFVFTLYNS-LDHNEKL-KLGARSPEEAAKWIR 108 (744)
Q Consensus 45 ~P~~~~~~pi~~~ii~--------~~~rVe--d----~Gr~~~~~~~~~v~~~yn~-~~~~~~~-~~~~~~~eea~~w~~ 108 (744)
.|...|+...-.|-|. ..++|. + .|.+.+...++|+|-..|. .+++..+ .+-+.+.+|.++|.+
T Consensus 156 ~Pi~~g~~v~l~g~Vt~vGrSSMEV~v~V~~~~~~~~~~~~~~~~~a~FtfVA~D~~~gkp~pVp~l~pete~Ek~~~e~ 235 (437)
T PLN02647 156 KPIRVDVDLKIVGAVTWVGRSSMEIQLEVIQPTKDESNTSDSVALTANFTFVARDSKTGKSAPVNRLSPETEEEKLLFEE 235 (437)
T ss_pred CCCcCCcEEEEEEEEEEecCCeEEEEEEEEEccccCCCCcEEEEEEEEEEEEEEcCCCCCeeeCCCCCCCCHHHHHHHHH
Confidence 5777665555555553 444554 2 3567789999999999998 5677777 888999999999988
Q ss_pred HHHHH
Q 004576 109 SLQEA 113 (744)
Q Consensus 109 ~~~~a 113 (744)
+.+..
T Consensus 236 a~~R~ 240 (437)
T PLN02647 236 AEARN 240 (437)
T ss_pred HHHHH
Confidence 66543
No 122
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=29.43 E-value=4.3e+02 Score=25.72 Aligned_cols=91 Identities=15% Similarity=0.203 Sum_probs=60.1
Q ss_pred cccccceeeEeeceeeeeeecC--CCCCCCcceeeeeeccceEEecCccceeeCcEEEEEEEecCCCCcceEEEecCCHH
Q 004576 24 MQISRKRYFILLDNCLNGYKMV--PSSEKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSLDHNEKLKLGARSPE 101 (744)
Q Consensus 24 ~~~~~~ry~vl~~~~~~~yKr~--P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~~~~~~~~~~~~~~e 101 (744)
+.-++-|+++|=.+.|=.=|+. |......|.- +-=.++.+.+.|..-+.++.-.-|.|..+.. ...+.+-|.|+|
T Consensus 26 r~K~~eRhVFLFE~~viF~K~~~~~~~~~~~p~Y--~yK~~ikls~lglte~v~gd~~kFeiw~~~~-~~~yilqA~t~e 102 (133)
T cd01227 26 RFKPMQRHIFLHEKAVLFCKKREENGEGEKAPSY--SFKQSLKMTAVGITENVKGDTKKFEIWYNAR-EEVYILQAPTPE 102 (133)
T ss_pred ccCCceeEEEEecceEEEEEEeccCCCCCcceeE--EEeeeEEeecccccccCCCCccEEEEEeCCC-CcEEEEEcCCHH
Confidence 4557789999999988666633 2221123321 2223445555555555555555566666554 568899999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 004576 102 EAAKWIRSLQEAAVKE 117 (744)
Q Consensus 102 ea~~w~~~~~~a~~~~ 117 (744)
.-..|++.|.+.+.++
T Consensus 103 ~K~~Wv~~I~~iL~~Q 118 (133)
T cd01227 103 IKAAWVNEIRKVLTSQ 118 (133)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987753
No 123
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=29.12 E-value=2e+02 Score=26.25 Aligned_cols=74 Identities=24% Similarity=0.390 Sum_probs=38.7
Q ss_pred ccccccccceeeEeece-eeeeeecCCCC---CCCcceeeeeeccceEEecCccceeeCcEEEEEEEecCCCCcceEEEe
Q 004576 21 RIGMQISRKRYFILLDN-CLNGYKMVPSS---EKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSLDHNEKLKLG 96 (744)
Q Consensus 21 ~lg~~~~~~ry~vl~~~-~~~~yKr~P~~---~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~~~~~~~~~~ 96 (744)
|-|. |.++|=|+|-+. .|-|+ +|.. .|+.|+-+ ++++|+- .+++.|+| ..- +++.-|
T Consensus 10 r~gl-f~kkR~LiLTd~PrL~yv--dp~~~~~KgeIp~s~----~~l~v~~-----~~~~~F~I----~Tp--~rty~l- 70 (89)
T cd01262 10 RKGL-FAKKRQLILTNGPRLIYV--DPVKKVVKGEIPWSD----VELRVEV-----KNSSHFFV----HTP--NKVYSF- 70 (89)
T ss_pred hhcc-ccceeeEEEecCceEEEE--cCCcCeEEeEecccc----cceEEEE-----ecCccEEE----ECC--CceEEE-
Confidence 3454 668888888653 22232 4544 24555443 3677772 23345554 111 111111
Q ss_pred cCCHHHHHHHHHHHHHH
Q 004576 97 ARSPEEAAKWIRSLQEA 113 (744)
Q Consensus 97 ~~~~eea~~w~~~~~~a 113 (744)
......|.+|.++++++
T Consensus 71 eD~~~~a~~W~~~I~~~ 87 (89)
T cd01262 71 EDPKGRASQWKKAIEDL 87 (89)
T ss_pred ECCCCCHHHHHHHHHHH
Confidence 12235788999988876
No 124
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=28.84 E-value=36 Score=42.63 Aligned_cols=94 Identities=21% Similarity=0.321 Sum_probs=61.8
Q ss_pred ceeeeEEEEEeecccccccccceeeEeec--eeeeeeecCCCCCCCcceeeeeec--cceEEecCccceeeCcEEEEEEE
Q 004576 8 SKIEGWLYAILVNRIGMQISRKRYFILLD--NCLNGYKMVPSSEKEEPVKSAMIH--SCIRVTDNGRESINRKVLFVFTL 83 (744)
Q Consensus 8 ~~~~gWm~~~~~~~lg~~~~~~ry~vl~~--~~~~~yKr~P~~~~~~pi~~~ii~--~~~rVed~Gr~~~~~~~~~v~~~ 83 (744)
..+||.+|.=|+--- -+ ..|||||.. ..|.||..-- +..| +|+|| .---|.-.|-+++-.+.||=+..
T Consensus 1634 r~~eG~LyKrGA~lK--~W-k~RwFVLd~~khqlrYYd~~e---dt~p--kG~IdLaevesv~~~~~k~vdekgffdlkt 1705 (1732)
T KOG1090|consen 1634 RIPEGYLYKRGAKLK--LW-KPRWFVLDPDKHQLRYYDDFE---DTKP--KGCIDLAEVESVALIGPKTVDEKGFFDLKT 1705 (1732)
T ss_pred cCcccchhhcchhhc--cc-ccceeEecCCccceeeecccc---cccc--cchhhhhhhhhhcccCccccCccceeeeeh
Confidence 368999998665322 23 679999975 5688887221 2333 56665 00112226667777888876643
Q ss_pred ecCCCCcceEEEecCCHHHHHHHHHHHHHHH
Q 004576 84 YNSLDHNEKLKLGARSPEEAAKWIRSLQEAA 114 (744)
Q Consensus 84 yn~~~~~~~~~~~~~~~eea~~w~~~~~~a~ 114 (744)
..+...+-|.|+-+|-+|++.+|..+
T Consensus 1706 -----t~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1706 -----TNRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred -----hhHHHHHHhccchHHHHHHHHHHHhh
Confidence 33444788999999999999998764
No 125
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=27.88 E-value=54 Score=30.00 Aligned_cols=30 Identities=17% Similarity=0.135 Sum_probs=25.5
Q ss_pred EEEEEEecCCHHHHHHHHHcCCCCccccccc
Q 004576 204 IMAVGVVDGTSEAIFQTLMSLGSSRSEWDFC 234 (744)
Q Consensus 204 ~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~ 234 (744)
+....+|+|||+.|++.|.|.+ ...+|...
T Consensus 2 ~~~~~~i~ap~e~Vw~~~td~~-~~~~W~~~ 31 (136)
T cd08893 2 FVYVTYIRATPEKVWQALTDPE-FTRQYWGG 31 (136)
T ss_pred eEEEEEecCCHHHHHHHHcCch-hhhheecc
Confidence 4567889999999999999988 48899765
No 126
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=27.10 E-value=3.8e+02 Score=24.51 Aligned_cols=25 Identities=36% Similarity=0.323 Sum_probs=20.8
Q ss_pred cceEEEecCCHHHHHHHHHHHHHHH
Q 004576 90 NEKLKLGARSPEEAAKWIRSLQEAA 114 (744)
Q Consensus 90 ~~~~~~~~~~~eea~~w~~~~~~a~ 114 (744)
..++-|...|.+||.+..+++++|+
T Consensus 80 ~~~~GL~F~se~eA~~F~~~v~~~~ 104 (104)
T cd00837 80 NCVYGLNFASEEEAAQFRKKVLEAI 104 (104)
T ss_pred CcEEEEeeCCHHHHHHHHHHHHhcC
Confidence 4567888899999999999888763
No 127
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=26.85 E-value=75 Score=36.95 Aligned_cols=37 Identities=24% Similarity=0.409 Sum_probs=31.8
Q ss_pred cEEEEEEEecCCCCcceEEEecCCHHHHHHHHHHHHHHH
Q 004576 76 KVLFVFTLYNSLDHNEKLKLGARSPEEAAKWIRSLQEAA 114 (744)
Q Consensus 76 ~~~~v~~~yn~~~~~~~~~~~~~~~eea~~w~~~~~~a~ 114 (744)
.+=|||.+.++.+ +++.+-|.+.+|...||++||+++
T Consensus 453 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 489 (496)
T PTZ00283 453 NAAHVFAVAFKTG--RRLLFQARSDPERDAWMQKIQSVL 489 (496)
T ss_pred CCCcEEEEEecCC--cEEEEecCCchhHHHHHHHHHHhc
Confidence 3568888888876 678999999999999999999885
No 128
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=26.52 E-value=5.1e+02 Score=24.36 Aligned_cols=107 Identities=16% Similarity=0.154 Sum_probs=63.5
Q ss_pred EEEEEEecCCHHHHHHHHHcCCCCccccccccceeEEE--EecCCcEEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCC
Q 004576 204 IMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVV--EHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDG 281 (744)
Q Consensus 204 ~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~~~e~~vV--E~ID~~tdIvY~~~~~~~lp~~vs~RDFV~lR~wrr~~dG 281 (744)
||....+++|++++|+.|.+. ..-|-.-...+.+ .+|.+ .-|... .+++--+.+.-.....+.
T Consensus 1 MkI~~~l~v~a~~ff~~l~~s----~~~DI~~~tgk~~~~~~L~G---~~Y~K~--------~~~~~~~~v~It~~~~~~ 65 (120)
T PF11687_consen 1 MKISKTLNVSAEEFFDYLIDS----LLYDIKQATGKKLPVKQLKG---FSYQKK--------FKNKREAKVKITEYEPNK 65 (120)
T ss_pred CeEEEEecCCHHHHHHHHHHH----HHHHHHHHcCCCCChhhcCC---cEEEEE--------cCCCCEEEEEEEEEcCCC
Confidence 467788999999999999863 2233222222222 23322 234331 112223333322223556
Q ss_pred eEEEEEeccCCCCCCCCCCeEEEEEeceeEEEEeCCCCCceEEEEEEEEeCCcccccc
Q 004576 282 TYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYL 339 (744)
Q Consensus 282 syvI~~~SV~Hp~~Pp~~G~VRa~i~~sGwvI~Pl~~~~~c~VTyi~qvDpkGwiP~~ 339 (744)
.|.+...|-. | ...-.|.|+|++.+ .|.|||-=....+++...+
T Consensus 66 ~Y~~~~~s~~--------~-----~~~i~Y~i~~~~~~-~~~v~y~E~~~~~~~~~~~ 109 (120)
T PF11687_consen 66 RYAATFSSSR--------G-----TFTISYEIEPLDDG-SIEVTYEEEYESKGFFQKL 109 (120)
T ss_pred EEEEEEEecC--------C-----CEEEEEEEEECCCC-cEEEEEEEEEccCCHHHHH
Confidence 7777766652 2 22347999999887 6999999999999877653
No 129
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=26.41 E-value=5.8e+02 Score=24.66 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=28.8
Q ss_pred CceEEEEEEecCCHHHHHHHHHcCCCCcccccc
Q 004576 201 HPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDF 233 (744)
Q Consensus 201 ~~~~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~ 233 (744)
...++.+.+|++||+.||+.+.+.+ .+.+|-.
T Consensus 7 ~~~~~~er~i~aP~e~Vf~A~Tdpe-~l~~W~~ 38 (149)
T COG3832 7 DRTLEIERLIDAPPEKVFEALTDPE-LLARWFM 38 (149)
T ss_pred CceEEEEEeecCCHHHHHHHhcCHH-HHHhhcC
Confidence 4689999999999999999999987 5889987
No 130
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=26.19 E-value=33 Score=41.93 Aligned_cols=107 Identities=21% Similarity=0.260 Sum_probs=67.6
Q ss_pred ceeeeEEEEEeecccccccccceeeEeeceeeeeeecCCCCCCCcceeeeeeccceEEecCccce--eeCcEEEEEEEec
Q 004576 8 SKIEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGRES--INRKVLFVFTLYN 85 (744)
Q Consensus 8 ~~~~gWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~--~~~~~~~v~~~yn 85 (744)
|+|.||+--++---=+-++ .+=+-.++-.-.+.|..+-.++=+.|++..=.+-+.-+-.-|.+. |-+..--||.||=
T Consensus 812 grmnGwlRVyRdd~~~stw-l~~wammdl~~~~fy~~~gadple~p~f~idlnkeqw~Lrtgqe~~~~v~dimrvfnvli 890 (1265)
T KOG0976|consen 812 GRMNGWLRVYRDDAEASTW-LLGWAMMDLEGDDFYDMNGADPLEDPVFLIDLNKEQWALRTGQESLTHVPDIMRVFNVLI 890 (1265)
T ss_pred hhcccceeeeccccchhHH-HHHHHHhhhcccchhhccCCccccCceEEeecchhHHHHHhccccccCCcchhhhheeee
Confidence 6899997553322222221 111112223455666655555556787765555444444445543 3355556777888
Q ss_pred CCCCcceEEEecCCHHHHHHHHHHHHHHHH
Q 004576 86 SLDHNEKLKLGARSPEEAAKWIRSLQEAAV 115 (744)
Q Consensus 86 ~~~~~~~~~~~~~~~eea~~w~~~~~~a~~ 115 (744)
-++..+-+-|++-++-.|++|...+++|..
T Consensus 891 IK~~~r~l~I~ap~~~saerwA~CLq~aqk 920 (1265)
T KOG0976|consen 891 IKDLERLLMIAAPSPKSAERWALCLQDAQK 920 (1265)
T ss_pred ecchhhhheeecCCCccHHHHHHHHHHHHH
Confidence 888888889999999999999999999954
No 131
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=24.00 E-value=3.1e+02 Score=25.39 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=47.6
Q ss_pred ccccccccceeeEeeceeeee--eecCCCCCCCcceeeeeec-cceEEecCccceeeCcEEEEEEEecCCCCcceEEEec
Q 004576 21 RIGMQISRKRYFILLDNCLNG--YKMVPSSEKEEPVKSAMIH-SCIRVTDNGRESINRKVLFVFTLYNSLDHNEKLKLGA 97 (744)
Q Consensus 21 ~lg~~~~~~ry~vl~~~~~~~--yKr~P~~~~~~pi~~~ii~-~~~rVed~Gr~~~~~~~~~v~~~yn~~~~~~~~~~~~ 97 (744)
++|+..+-+|=|+|=+-.|-| ||+.+......==..-+|. ..+.+++. .|++.|+. .+.+.+-|
T Consensus 11 el~~~~rK~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~-----------~~~~~~~~--~KSf~~~a 77 (96)
T cd01228 11 ELVEGSRKLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSE-----------PFRIHNKN--GKSYTFLL 77 (96)
T ss_pred eehhCCCcceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHheecch-----------hhhccccC--CceEEEEe
Confidence 467788888888887776544 4443333211111122222 22333322 26666555 56678889
Q ss_pred CCHHHHHHHHHHHHHH
Q 004576 98 RSPEEAAKWIRSLQEA 113 (744)
Q Consensus 98 ~~~eea~~w~~~~~~a 113 (744)
.|..|-..||+++++.
T Consensus 78 sS~~Er~eW~~hI~~~ 93 (96)
T cd01228 78 SSDYERSEWRESIQKL 93 (96)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999977653
No 132
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=22.30 E-value=66 Score=31.16 Aligned_cols=32 Identities=9% Similarity=0.156 Sum_probs=28.6
Q ss_pred CceEEEEEEecCCHHHHHHHHHcCCCCcccccc
Q 004576 201 HPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDF 233 (744)
Q Consensus 201 ~~~~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~ 233 (744)
...+....+|++|++.|+++|.|.+ ...+|..
T Consensus 10 ~~~i~~~~~i~Ap~e~Vw~altdp~-~~~~W~~ 41 (157)
T cd08899 10 GATLRFERLLPAPIEDVWAALTDPE-RLARWFA 41 (157)
T ss_pred CeEEEEEEecCCCHHHHHHHHcCHH-HHHhhcC
Confidence 4678999999999999999999987 4889988
No 133
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=22.26 E-value=2e+02 Score=27.19 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=24.8
Q ss_pred CCcceEEEecCCHHHHHHHHHHHHHHHHh
Q 004576 88 DHNEKLKLGARSPEEAAKWIRSLQEAAVK 116 (744)
Q Consensus 88 ~~~~~~~~~~~~~eea~~w~~~~~~a~~~ 116 (744)
+...+.-|...|++||.++.+++++|++.
T Consensus 81 ~~~~v~GLnF~Se~eA~~F~~~v~~Al~~ 109 (111)
T cd01207 81 DARQVYGLNFGSKEDATMFASAMLSALEV 109 (111)
T ss_pred cCCeEEeeccCCHHHHHHHHHHHHHHHHh
Confidence 34466689999999999999999999874
No 134
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=21.45 E-value=84 Score=29.12 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=26.3
Q ss_pred EEEEEEecCCHHHHHHHHHcCCCCcccccccc
Q 004576 204 IMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCF 235 (744)
Q Consensus 204 ~Ka~~vV~aspe~Vf~~L~d~~~~R~eWD~~~ 235 (744)
++....|+||++.|++++.+.+. ..+|....
T Consensus 3 i~~~i~i~a~~e~Vw~~~td~~~-~~~W~~~~ 33 (145)
T cd08898 3 IERTILIDAPRERVWRALTDPEH-FGQWFGVK 33 (145)
T ss_pred eEEEEEecCCHHHHHHHhcChhh-hhhccccc
Confidence 56778999999999999999884 78998753
No 135
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=21.39 E-value=1.2e+02 Score=37.77 Aligned_cols=82 Identities=29% Similarity=0.397 Sum_probs=62.1
Q ss_pred ccccccceeeEeeceeeeeeecCCCCC--CCcceeeeeeccceEEecCccceeeCcEEEEEEEecCCCCcceEEEecCCH
Q 004576 23 GMQISRKRYFILLDNCLNGYKMVPSSE--KEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSLDHNEKLKLGARSP 100 (744)
Q Consensus 23 g~~~~~~ry~vl~~~~~~~yKr~P~~~--~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~~~~~~~~~~~~~~ 100 (744)
--.+.+-|||+|.|.+|-.||..-+.. .+-|+.++++=.|++= +-.--..+-|++|.. -++.-+.|.+.
T Consensus 1047 ~g~~fqdryfilng~~l~lyke~KssKhek~wpl~s~k~Y~Gvkk------klKpPt~wg~T~i~e---khh~~l~cd~s 1117 (1186)
T KOG1117|consen 1047 SGNKFQDRYFILNGGCLFLYKEVKSSKHEKEWPLSSMKVYLGVKK------KLKPPTSWGFTAISE---KHHWYLCCDSS 1117 (1186)
T ss_pred cCCccceEEEEecCcEEEEeehhhccccccccccccceEEecccc------ccCCCCccceeeeee---cceEEEecCCc
Confidence 334568899999999999999555443 3889999998766643 334456788899832 34778899999
Q ss_pred HHHHHHHHHHHHH
Q 004576 101 EEAAKWIRSLQEA 113 (744)
Q Consensus 101 eea~~w~~~~~~a 113 (744)
.+-..|+..|--|
T Consensus 1118 ~~~~ewfts~fka 1130 (1186)
T KOG1117|consen 1118 SEQTEWFTSIFKA 1130 (1186)
T ss_pred cccchhhhhhhhh
Confidence 9999999976555
No 136
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=20.93 E-value=2.1e+02 Score=32.21 Aligned_cols=101 Identities=18% Similarity=0.271 Sum_probs=65.6
Q ss_pred eeeeEEEEEeecccccccccceeeEeeceeeeeeecCCCCCCCcceeeeee----ccceEEe-cCccceeeCcEEEEEEE
Q 004576 9 KIEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMI----HSCIRVT-DNGRESINRKVLFVFTL 83 (744)
Q Consensus 9 ~~~gWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii----~~~~rVe-d~Gr~~~~~~~~~v~~~ 83 (744)
.|-||+.-=--|.|--+-.+.||+-|+|..+..|-.-|-+.-+- .|..+. ..-++|- |- -.-.+-=|+|.+
T Consensus 282 vyMGWvne~~q~~~s~q~y~P~FLaLkG~~~y~F~tPPv~t~dw-~rAe~ty~vye~mfki~Kds---d~~D~R~~CF~~ 357 (505)
T KOG3549|consen 282 VYMGWVNEGVQNNISWQSYKPRFLALKGTEVYLFETPPVNTADW-SRAEVTYKVYETMFKIVKDS---DTVDSRQHCFLL 357 (505)
T ss_pred EEeeeccccccCcccccccCceeEEecCcEEEEEcCCCcchhhh-hhhhhhHHHHHHHHHHhccc---cccccccceEEE
Confidence 59999987334447767679999999999999998888663210 011100 0111211 10 011223478888
Q ss_pred ecCCCCcceEEEecCCHHHHHHHHHHHHHHHH
Q 004576 84 YNSLDHNEKLKLGARSPEEAAKWIRSLQEAAV 115 (744)
Q Consensus 84 yn~~~~~~~~~~~~~~~eea~~w~~~~~~a~~ 115 (744)
-...++++-+. .....|.++|-.+|+.|+-
T Consensus 358 qs~~ge~~yfs--VEl~seLa~wE~sfq~Atf 387 (505)
T KOG3549|consen 358 QSSGGEPRYFS--VELRSELARWENSFQAATF 387 (505)
T ss_pred EcCCCCceEEE--EehhhHHHHHHHHHhhHHh
Confidence 88888877664 4567899999999999864
No 137
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=20.50 E-value=1.3e+02 Score=33.87 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=59.0
Q ss_pred eeeeeee-cCCCCCC-Ccceeeeeec----------cceEEe--cCccceeeCcEEEEEEEecCCCCcceE-EEecCCHH
Q 004576 37 NCLNGYK-MVPSSEK-EEPVKSAMIH----------SCIRVT--DNGRESINRKVLFVFTLYNSLDHNEKL-KLGARSPE 101 (744)
Q Consensus 37 ~~~~~yK-r~P~~~~-~~pi~~~ii~----------~~~rVe--d~Gr~~~~~~~~~v~~~yn~~~~~~~~-~~~~~~~e 101 (744)
.++++.- ++|...+ ...|.+|.|. .+++.+ ..|-+++-.+++|+|-.-|..+..-.+ .+-+.+++
T Consensus 64 AsV~~i~f~~~~~~~~~d~i~~a~Vt~a~~sSMEv~i~V~q~~~~~~~~~~~~kA~f~fVard~~~~~~~l~~l~p~te~ 143 (357)
T KOG2763|consen 64 ASVDRIDFEKPSEVGQVDIIIVAKVTWAGKSSMEVSIYVMQEDLATGEKSLVLKATFTFVARDATNGKAPLNGLTPETED 143 (357)
T ss_pred eeEEEEEeeccccccceeEEEEEEEEeccccceEEEEEEEEehhccchhhheeeeEEEEEEecCCCCccccCCccCCCCc
Confidence 5677666 6766655 4566668875 455553 489999999999999999999886566 88899999
Q ss_pred HHHHHHHHHHHHHHh
Q 004576 102 EAAKWIRSLQEAAVK 116 (744)
Q Consensus 102 ea~~w~~~~~~a~~~ 116 (744)
|...|.+ |.++
T Consensus 144 e~~~~~~----aeer 154 (357)
T KOG2763|consen 144 EKVLYRE----AEER 154 (357)
T ss_pred cceehhh----HHHh
Confidence 9999999 6554
No 138
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=20.03 E-value=2.7e+02 Score=34.95 Aligned_cols=95 Identities=19% Similarity=0.404 Sum_probs=61.8
Q ss_pred eEEEE-------EeecccccccccceeeEeeceeeeeeecCCCCCCCcceeeeeeccc--eEEecCcccee-eCcEEEEE
Q 004576 12 GWLYA-------ILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSC--IRVTDNGRESI-NRKVLFVF 81 (744)
Q Consensus 12 gWm~~-------~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~--~rVed~Gr~~~-~~~~~~v~ 81 (744)
|.+|- +..-|=++.-+..+|-||.|-.|.||...-++- | .+.|+.+ +.+.-.--.++ +-+++|+|
T Consensus 496 ~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~S~t---P--~~lI~~~Eivclav~~pd~~pn~~~~f~f 570 (1186)
T KOG1117|consen 496 GFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEKSTT---P--NGLININEIVCLAVHPPDTYPNTGFIFIF 570 (1186)
T ss_pred ceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcCCCC---C--CceeeccceEEEeecCCCCCCCcCceeEE
Confidence 77876 122234566677889999999999999554442 2 2233321 11111111122 34699999
Q ss_pred EEecCCCCcceEEEecCCHHHHHHHHHHHHHHHHhc
Q 004576 82 TLYNSLDHNEKLKLGARSPEEAAKWIRSLQEAAVKE 117 (744)
Q Consensus 82 ~~yn~~~~~~~~~~~~~~~eea~~w~~~~~~a~~~~ 117 (744)
.+|=..+ +-+.+|+.+++++++|-+ |+++.
T Consensus 571 E~~l~~e--r~~~fgle~ad~l~~wt~----aiaKh 600 (1186)
T KOG1117|consen 571 EIYLPGE--RVFLFGLETADALRKWTE----AIAKH 600 (1186)
T ss_pred EEeeccc--ceEEeecccHHHHHHHHH----HHHHh
Confidence 9997665 566999999999999999 66654
Done!