BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004577
(744 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 445 bits (1144), Expect = e-125, Method: Compositional matrix adjust.
Identities = 264/735 (35%), Positives = 403/735 (54%), Gaps = 70/735 (9%)
Query: 14 VIKSPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLXXXXXXXXXXXXXXXXXXXXX 73
+ KSP DKR YR +EL N + LL+ DP
Sbjct: 25 ITKSPEDKREYRGLELANGIKVLLISDP-------------------------------- 52
Query: 74 XXXXXXXXXXXKEVKGKGIFSQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTE 133
T K++AA+ V +GS DP GL+HFLEHMLF+G+ +
Sbjct: 53 ---------------------TTDKSSAALDVHIGSLSDPPNIAGLSHFLEHMLFLGTKK 91
Query: 134 FPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAME 193
+P ENEY +LS+H GSSNA+T EHT Y+F++ E L+GAL RF+QFF+SPL A +
Sbjct: 92 YPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKD 151
Query: 194 REVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSL-IGAMEKGINLQEQ 252
REV AVDSE + + NDA RL QL+ T H F+KF GNK +L ++GI+++++
Sbjct: 152 REVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQE 211
Query: 253 IMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACK- 311
++K + YY LM +VV+G E LD L + VV+LF+ V P+F + K
Sbjct: 212 LLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQ 271
Query: 312 LFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSIS 371
L+++ +KD+ L +T+ +P L + Y YL HL+GHEG GSL S LK +GW ++
Sbjct: 272 LYKIVPIKDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLV 331
Query: 372 AGV--GDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKEL 429
G G G F++++ LT+ GL + DII ++QYI+ LR PQ+W+F+EL
Sbjct: 332 GGQKEGARGF------MFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQEL 385
Query: 430 QDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPE 489
+D+ + FRF +++ Y +++AG L YP E V+ EY+ E + ++I+ +L PE
Sbjct: 386 KDLNAVAFRFKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPE 445
Query: 490 NMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIP 549
N+R+ +VSKSF D E W+G++Y +E I +++ W+N +++ +LP++NEFIP
Sbjct: 446 NVRVAIVSKSFEGKTD-RTEEWYGTQYKQEAIPDEVIKKWQN-ADLNGKFKLPTKNEFIP 503
Query: 550 TDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVK 609
T+F I + + P I D + + W+K D+ F LP+AN F Y +
Sbjct: 504 TNFEI----LPLEKEATPYPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPL 559
Query: 610 NCILTELFIHLLKDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAI 669
+ + L++ LLKD LNE Y A +A L + + L V G+NDK P+LL KI+
Sbjct: 560 HSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEK 619
Query: 670 AKSFLPSDDRFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLS 728
+F + RF++IKE +R+L N +P H+ Y ++ + + DE L ++
Sbjct: 620 MATFEIDEKRFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVT 679
Query: 729 LADLMAFIPELRSQV 743
L L AFIP+L S++
Sbjct: 680 LPRLKAFIPQLLSRL 694
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 445 bits (1144), Expect = e-125, Method: Compositional matrix adjust.
Identities = 263/735 (35%), Positives = 402/735 (54%), Gaps = 70/735 (9%)
Query: 14 VIKSPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLXXXXXXXXXXXXXXXXXXXXX 73
+ KSP DKR YR +EL N + LL+ DP
Sbjct: 25 ITKSPEDKREYRGLELANGIKVLLISDP-------------------------------- 52
Query: 74 XXXXXXXXXXXKEVKGKGIFSQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTE 133
T K++AA+ V +GS DP GL+HFL+HMLF+G+ +
Sbjct: 53 ---------------------TTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKK 91
Query: 134 FPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAME 193
+P ENEY +LS+H GSSNA+T EHT Y+F++ E L+GAL RF+QFF+SPL A +
Sbjct: 92 YPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKD 151
Query: 194 REVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSL-IGAMEKGINLQEQ 252
REV AVDSE + + NDA RL QL+ T H F+KF GNK +L ++GI+++++
Sbjct: 152 REVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQE 211
Query: 253 IMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACK- 311
++K + YY LM +VV+G E LD L + VV+LF+ V P+F + K
Sbjct: 212 LLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQ 271
Query: 312 LFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSIS 371
L+++ +KD+ L +T+ +P L + Y YL HL+GHEG GSL S LK +GW ++
Sbjct: 272 LYKIVPIKDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLV 331
Query: 372 AG--VGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKEL 429
G G G F++++ LT+ GL + DII ++QYI+ LR PQ+W+F+EL
Sbjct: 332 GGQKAGARGF------MFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQEL 385
Query: 430 QDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPE 489
+D+ + FRF +++ Y +++AG L YP E V+ EY+ E + ++I+ +L PE
Sbjct: 386 KDLNAVAFRFKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPE 445
Query: 490 NMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIP 549
N+R+ +VSKSF D E W+G++Y +E I +++ W+N ++ +LP++NEFIP
Sbjct: 446 NVRVAIVSKSFEGKTD-RTEEWYGTQYKQEAIPDAVIAKWQN-AALNGKFKLPTKNEFIP 503
Query: 550 TDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVK 609
T+F I + + P I D + + W+K D+ F LP+AN F Y +
Sbjct: 504 TNFEI----LPLEAAATPYPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPL 559
Query: 610 NCILTELFIHLLKDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAI 669
+ + L++ LLKD LNE Y A +A L + + L V G+NDK P+LL KI+
Sbjct: 560 HSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEK 619
Query: 670 AKSFLPSDDRFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLS 728
+F + RF++IKE +R+L N +P H+ Y ++ + + DE L ++
Sbjct: 620 MATFEIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALADVT 679
Query: 729 LADLMAFIPELRSQV 743
L L AFIP+L S++
Sbjct: 680 LPRLKAFIPQLLSRL 694
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 443 bits (1139), Expect = e-124, Method: Compositional matrix adjust.
Identities = 263/735 (35%), Positives = 403/735 (54%), Gaps = 70/735 (9%)
Query: 14 VIKSPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLXXXXXXXXXXXXXXXXXXXXX 73
+ KSP DKR YR +EL N + LL+ DP
Sbjct: 25 ITKSPEDKREYRGLELANGIKVLLISDP-------------------------------- 52
Query: 74 XXXXXXXXXXXKEVKGKGIFSQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTE 133
T K++AA+ V +GS DP GL+HFL+HMLF+G+ +
Sbjct: 53 ---------------------TTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKK 91
Query: 134 FPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAME 193
+P ENEY +LS+H GSSNA+T EHT Y+F++ E L+GAL RF+QFF+SPL A +
Sbjct: 92 YPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKD 151
Query: 194 REVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSL-IGAMEKGINLQEQ 252
REV AVDSE + + NDA RL QL+ T H F+KF GNK +L ++GI+++++
Sbjct: 152 REVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQE 211
Query: 253 IMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACK- 311
++K + YY LM +VV+G E LD L + VV+LF+ V P+F + K
Sbjct: 212 LLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQ 271
Query: 312 LFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSIS 371
L+++ +KD+ L +T+ +P L + Y YL HL+GHEG GSL S LK +GW ++
Sbjct: 272 LYKIVPIKDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLV 331
Query: 372 AGV--GDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKEL 429
G G G F++++ LT+ GL + DII ++QYI+ LR PQ+W+F+EL
Sbjct: 332 GGQKEGARGF------MFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQEL 385
Query: 430 QDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPE 489
+D+ + FRF +++ Y +++AG L YP E V+ EY+ E + ++I+ +L PE
Sbjct: 386 KDLNAVAFRFKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPE 445
Query: 490 NMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIP 549
N+R+ +VSKSF D E W+G++Y +E I +++ W+N +++ +LP++NEFIP
Sbjct: 446 NVRVAIVSKSFEGKTD-RTEEWYGTQYKQEAIPDEVIKKWQN-ADLNGKFKLPTKNEFIP 503
Query: 550 TDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVK 609
T+F I + + P I D + + W+K D+ F LP+AN F Y +
Sbjct: 504 TNFEI----LPLEKEATPYPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPL 559
Query: 610 NCILTELFIHLLKDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAI 669
+ + L++ LLKD LNE Y A +A L + + L V G+NDK P+LL KI+
Sbjct: 560 HSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEK 619
Query: 670 AKSFLPSDDRFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLS 728
+F + RF++IKE +R+L N +P H+ Y ++ + + DE L ++
Sbjct: 620 MATFEIDEKRFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVT 679
Query: 729 LADLMAFIPELRSQV 743
L L AFIP+L S++
Sbjct: 680 LPRLKAFIPQLLSRL 694
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 442 bits (1137), Expect = e-124, Method: Compositional matrix adjust.
Identities = 263/735 (35%), Positives = 403/735 (54%), Gaps = 70/735 (9%)
Query: 14 VIKSPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLXXXXXXXXXXXXXXXXXXXXX 73
+ KSP DKR YR +EL N + LL+ DP
Sbjct: 54 ITKSPEDKREYRGLELANGIKVLLISDP-------------------------------- 81
Query: 74 XXXXXXXXXXXKEVKGKGIFSQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTE 133
T K++AA+ V +GS DP GL+HFL+HMLF+G+ +
Sbjct: 82 ---------------------TTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKK 120
Query: 134 FPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAME 193
+P ENEY +LS+H GSSNA+T EHT Y+F++ E L+GAL RF+QFF+SPL A +
Sbjct: 121 YPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKD 180
Query: 194 REVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSL-IGAMEKGINLQEQ 252
REV AVDSE + + NDA RL QL+ T H F+KF GNK +L ++GI+++++
Sbjct: 181 REVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQE 240
Query: 253 IMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACK- 311
++K + YY LM +VV+G E LD L + VV+LF+ V P+F + K
Sbjct: 241 LLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQ 300
Query: 312 LFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSIS 371
L+++ +KD+ L +T+ +P L + Y YL HL+GHEG GSL S LK +GW ++
Sbjct: 301 LYKIVPIKDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLV 360
Query: 372 AGV--GDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKEL 429
G G G F++++ LT+ GL + DII ++QYI+ LR PQ+W+F+EL
Sbjct: 361 GGQKEGARGF------MFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQEL 414
Query: 430 QDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPE 489
+D+ + FRF +++ Y +++AG L YP E V+ EY+ E + ++I+ +L PE
Sbjct: 415 KDLNAVAFRFKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPE 474
Query: 490 NMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIP 549
N+R+ +VSKSF D E W+G++Y +E I +++ W+N +++ +LP++NEFIP
Sbjct: 475 NVRVAIVSKSFEGKTD-RTEEWYGTQYKQEAIPDEVIKKWQN-ADLNGKFKLPTKNEFIP 532
Query: 550 TDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVK 609
T+F I + + P I D + + W+K D+ F LP+AN F Y +
Sbjct: 533 TNFEI----LPLEKEATPYPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPL 588
Query: 610 NCILTELFIHLLKDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAI 669
+ + L++ LLKD LNE Y A +A L + + L V G+NDK P+LL KI+
Sbjct: 589 HSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEK 648
Query: 670 AKSFLPSDDRFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLS 728
+F + RF++IKE +R+L N +P H+ Y ++ + + DE L ++
Sbjct: 649 MATFEIDEKRFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVT 708
Query: 729 LADLMAFIPELRSQV 743
L L AFIP+L S++
Sbjct: 709 LPRLKAFIPQLLSRL 723
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp
Length = 1019
Score = 439 bits (1128), Expect = e-123, Method: Compositional matrix adjust.
Identities = 263/746 (35%), Positives = 400/746 (53%), Gaps = 70/746 (9%)
Query: 3 GNGCVWSSDEIVIKSPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLXXXXXXXXXX 62
N + ++ ++KSP DKR YR +EL N + LL+ DP
Sbjct: 43 NNPAIQRIEDHIVKSPEDKREYRGLELANGIKVLLISDP--------------------- 81
Query: 63 XXXXXXXXXXXXXXXXXXXXXXKEVKGKGIFSQTKKAAAAMCVGMGSFCDPVEAQGLAHF 122
T K++AA+ V +GS DP GL+HF
Sbjct: 82 --------------------------------TTDKSSAALDVHIGSLSDPPNIPGLSHF 109
Query: 123 LEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFF 182
EHMLF+G+ ++P ENEY +LS+H GSSNA+T EHT Y+F++ E L+GAL RF+QFF
Sbjct: 110 CEHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFF 169
Query: 183 ISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSL-IG 241
+ PL +REV AVDSE + + NDA RL QL+ T H F+KF GNK +L
Sbjct: 170 LCPLFDASCKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETR 229
Query: 242 AMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFT 301
++GI+++E+++K + YY LM + V+G E LD L + VV+LF+ V P+F
Sbjct: 230 PNQEGIDVREELLKFHSTYYSSNLMAICVLGRESLDDLTNLVVKLFSEVENKNVPLPEFP 289
Query: 302 VEGTIWKACK-LFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSF 360
+ K L+++ +KD+ L +T+ +P L Q Y YL HL+GHEG GSL S
Sbjct: 290 EHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQQYYKSNPGHYLGHLIGHEGPGSLLSE 349
Query: 361 LKGRGWATSISAGV--GDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQ 418
LK +GW ++ G G G F++++ LT+ GL + DII ++QYI+ LR
Sbjct: 350 LKSKGWVNTLVGGQKEGARGF------MFFIINVDLTEEGLLHVEDIILHMFQYIQKLRA 403
Query: 419 VSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEM 478
PQ+W+F+E +D+ + FRF +++ Y +++AG L YP V+ EY+ E + ++
Sbjct: 404 EGPQEWVFQECKDLNAVAFRFKDKERPRGYTSKIAGKLHYYPLNGVLTAEYLLEEFRPDL 463
Query: 479 IKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVS 538
I +L PEN+R+ +VSKSF D E W+G++Y +E I +++ W+N +++
Sbjct: 464 IDMVLDKLRPENVRVAIVSKSFEGKTD-RTEQWYGTQYKQEAIPEDVIQKWQN-ADLNGK 521
Query: 539 LQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFR 598
+LP++NEFIPT+F I A + D P I D + + W+K D+ F LP+A F
Sbjct: 522 FKLPTKNEFIPTNFEILA--LEKD--ATPYPALIKDTAMSKLWFKQDDKFFLPKACLNFE 577
Query: 599 INLKGGYDNVKNCILTELFIHLLKDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDK 658
Y + +C + L++ LLKD LNE Y A +A L + + L V G+NDK
Sbjct: 578 FFSPFAYVDPLHCNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDK 637
Query: 659 LPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLCQSFYDV 717
P+LL KI +F RF++IKE +R+L N +P H+ Y ++ + +
Sbjct: 638 QPILLKKITEKMATFEIDKKRFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTK 697
Query: 718 DEKLSILHGLSLADLMAFIPELRSQV 743
DE L ++L L AFIP+L S++
Sbjct: 698 DELKEALDDVTLPRLKAFIPQLLSRL 723
>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin)
Length = 978
Score = 438 bits (1127), Expect = e-123, Method: Compositional matrix adjust.
Identities = 263/746 (35%), Positives = 400/746 (53%), Gaps = 70/746 (9%)
Query: 3 GNGCVWSSDEIVIKSPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLXXXXXXXXXX 62
N + ++ ++KSP DKR YR +EL N + LL+ DP
Sbjct: 2 NNPAIQRIEDHIVKSPEDKREYRGLELANGIKVLLISDP--------------------- 40
Query: 63 XXXXXXXXXXXXXXXXXXXXXXKEVKGKGIFSQTKKAAAAMCVGMGSFCDPVEAQGLAHF 122
T K++AA+ V +GS DP GL+HF
Sbjct: 41 --------------------------------TTDKSSAALDVHIGSLSDPPNIPGLSHF 68
Query: 123 LEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFF 182
EHMLF+G+ ++P ENEY +LS+H GSSNA+T EHT Y+F++ E L+GAL RF+QFF
Sbjct: 69 CEHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFF 128
Query: 183 ISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSL-IG 241
+ PL +REV AVDSE + + NDA RL QL+ T H F+KF GNK +L
Sbjct: 129 LCPLFDASCKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETR 188
Query: 242 AMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFT 301
++GI+++E+++K + YY LM + V+G E LD L + VV+LF+ V P+F
Sbjct: 189 PNQEGIDVREELLKFHSTYYSSNLMAICVLGRESLDDLTNLVVKLFSEVENKNVPLPEFP 248
Query: 302 VEGTIWKACK-LFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSF 360
+ K L+++ +KD+ L +T+ +P L Q Y YL HL+GHEG GSL S
Sbjct: 249 EHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQQYYKSNPGHYLGHLIGHEGPGSLLSE 308
Query: 361 LKGRGWATSISAGV--GDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQ 418
LK +GW ++ G G G F++++ LT+ GL + DII ++QYI+ LR
Sbjct: 309 LKSKGWVNTLVGGQKEGARGF------MFFIINVDLTEEGLLHVEDIILHMFQYIQKLRA 362
Query: 419 VSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEM 478
PQ+W+F+E +D+ + FRF +++ Y +++AG L YP V+ EY+ E + ++
Sbjct: 363 EGPQEWVFQECKDLNAVAFRFKDKERPRGYTSKIAGKLHYYPLNGVLTAEYLLEEFRPDL 422
Query: 479 IKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVS 538
I +L PEN+R+ +VSKSF D E W+G++Y +E I +++ W+N +++
Sbjct: 423 IDMVLDKLRPENVRVAIVSKSFEGKTD-RTEQWYGTQYKQEAIPEDVIQKWQN-ADLNGK 480
Query: 539 LQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFR 598
+LP++NEFIPT+F I A + D P I D + + W+K D+ F LP+A F
Sbjct: 481 FKLPTKNEFIPTNFEILA--LEKD--ATPYPALIKDTAMSKLWFKQDDKFFLPKACLNFE 536
Query: 599 INLKGGYDNVKNCILTELFIHLLKDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDK 658
Y + +C + L++ LLKD LNE Y A +A L + + L V G+NDK
Sbjct: 537 FFSPFAYVDPLHCNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDK 596
Query: 659 LPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLCQSFYDV 717
P+LL KI +F RF++IKE +R+L N +P H+ Y ++ + +
Sbjct: 597 QPILLKKITEKMATFEIDKKRFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTK 656
Query: 718 DEKLSILHGLSLADLMAFIPELRSQV 743
DE L ++L L AFIP+L S++
Sbjct: 657 DELKEALDDVTLPRLKAFIPQLLSRL 682
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 438 bits (1127), Expect = e-123, Method: Compositional matrix adjust.
Identities = 248/653 (37%), Positives = 384/653 (58%), Gaps = 17/653 (2%)
Query: 96 TKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYT 155
T K++AA+ V +GS DP GL+HFL+HMLF+G+ ++P ENEY +LS+H GSSNA+T
Sbjct: 54 TDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFT 113
Query: 156 ETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQ 215
EHT Y+F++ E L+GAL RF+QFF+SPL A +REV AVDSE + + NDA RL
Sbjct: 114 SGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLF 173
Query: 216 QLQCHTSQLGHAFNKFFWGNKKSL-IGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGE 274
QL+ T H F+KF GNK +L ++GI+++++++K + YY LM +VV+G E
Sbjct: 174 QLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRE 233
Query: 275 PLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACK-LFRLEAVKDVHILDLTWTLPCL 333
LD L + VV+LF+ V P+F + K L+++ +KD+ L +T+ +P L
Sbjct: 234 SLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDL 293
Query: 334 HQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGV--GDEGMHRSSIAYIFVMS 391
+ Y YL HL+GHEG GSL S LK +GW ++ G G G F+++
Sbjct: 294 QKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKEGARGF------MFFIIN 347
Query: 392 IHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAE 451
+ LT+ GL + DII ++QYI+ LR PQ+W+F+EL+D+ + FRF +++ Y ++
Sbjct: 348 VDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSK 407
Query: 452 LAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPW 511
+AG L YP E V+ EY+ E + ++I+ +L PEN+R+ +VSKSF D E W
Sbjct: 408 IAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPENVRVAIVSKSFEGKTD-RTEEW 466
Query: 512 FGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTC 571
+G++Y +E I +++ W+N +++ +LP++NEFIPT+F I + + P
Sbjct: 467 YGTQYKQEAIPDEVIKKWQN-ADLNGKFKLPTKNEFIPTNFEI----LPLEKEATPYPAL 521
Query: 572 IIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQ 631
I D + + W+K D+ F LP+AN F Y + + + L++ LLKD LNE Y
Sbjct: 522 IKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEYAYA 581
Query: 632 ASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTL 691
A +A L + + L V G+NDK P+LL KI+ +F + RF++IKE +R+L
Sbjct: 582 AELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEKRFEIIKEAYMRSL 641
Query: 692 KNTNM-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIPELRSQV 743
N +P H+ Y ++ + + DE L ++L L AFIP+L S++
Sbjct: 642 NNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRL 694
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 438 bits (1126), Expect = e-123, Method: Compositional matrix adjust.
Identities = 248/653 (37%), Positives = 384/653 (58%), Gaps = 17/653 (2%)
Query: 96 TKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYT 155
T K++AA+ V +GS DP GL+HFL+HMLF+G+ ++P ENEY +LS+H GSSNA+T
Sbjct: 41 TDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFT 100
Query: 156 ETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQ 215
EHT Y+F++ E L+GAL RF+QFF+SPL A +REV AVDSE + + NDA RL
Sbjct: 101 SGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLF 160
Query: 216 QLQCHTSQLGHAFNKFFWGNKKSL-IGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGE 274
QL+ T H F+KF GNK +L ++GI+++++++K + YY LM +VV+G E
Sbjct: 161 QLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRE 220
Query: 275 PLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACK-LFRLEAVKDVHILDLTWTLPCL 333
LD L + VV+LF+ V P+F + K L+++ +KD+ L +T+ +P L
Sbjct: 221 SLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDL 280
Query: 334 HQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGV--GDEGMHRSSIAYIFVMS 391
+ Y YL HL+GHEG GSL S LK +GW ++ G G G F+++
Sbjct: 281 QKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKEGARGF------MFFIIN 334
Query: 392 IHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAE 451
+ LT+ GL + DII ++QYI+ LR PQ+W+F+EL+D+ + FRF +++ Y ++
Sbjct: 335 VDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSK 394
Query: 452 LAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPW 511
+AG L YP E V+ EY+ E + ++I+ +L PEN+R+ +VSKSF D E W
Sbjct: 395 IAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPENVRVAIVSKSFEGKTD-RTEEW 453
Query: 512 FGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTC 571
+G++Y +E I +++ W+N +++ +LP++NEFIPT+F I + + P
Sbjct: 454 YGTQYKQEAIPDEVIKKWQN-ADLNGKFKLPTKNEFIPTNFEI----LPLEKEATPYPAL 508
Query: 572 IIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQ 631
I D + + W+K D+ F LP+AN F Y + + + L++ LLKD LNE Y
Sbjct: 509 IKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEYAYA 568
Query: 632 ASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTL 691
A +A L + + L V G+NDK P+LL KI+ +F + RF++IKE +R+L
Sbjct: 569 AELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEKRFEIIKEAYMRSL 628
Query: 692 KNTNM-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIPELRSQV 743
N +P H+ Y ++ + + DE L ++L L AFIP+L S++
Sbjct: 629 NNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRL 681
>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With
Two Bound Peptides
Length = 1019
Score = 435 bits (1119), Expect = e-122, Method: Compositional matrix adjust.
Identities = 262/746 (35%), Positives = 399/746 (53%), Gaps = 70/746 (9%)
Query: 3 GNGCVWSSDEIVIKSPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLXXXXXXXXXX 62
N + ++ ++KSP DKR YR +EL N + LL+ DP
Sbjct: 43 NNPAIQRIEDHIVKSPEDKREYRGLELANGIKVLLISDP--------------------- 81
Query: 63 XXXXXXXXXXXXXXXXXXXXXXKEVKGKGIFSQTKKAAAAMCVGMGSFCDPVEAQGLAHF 122
T K++AA+ V +GS DP GL+HF
Sbjct: 82 --------------------------------TTDKSSAALDVHIGSLSDPPNIPGLSHF 109
Query: 123 LEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFF 182
HMLF+G+ ++P ENEY +LS+H GSSNA+T EHT Y+F++ E L+GAL RF+QFF
Sbjct: 110 CFHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFF 169
Query: 183 ISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSL-IG 241
+ PL +REV AVDSE + + NDA RL QL+ T H F+KF GNK +L
Sbjct: 170 LCPLFDASCKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETR 229
Query: 242 AMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFT 301
++GI+++E+++K + YY LM + V+G E LD L + VV+LF+ V P+F
Sbjct: 230 PNQEGIDVREELLKFHSTYYSSNLMAICVLGRESLDDLTNLVVKLFSEVENKNVPLPEFP 289
Query: 302 VEGTIWKACK-LFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSF 360
+ K L+++ +KD+ L +T+ +P L Q Y YL HL+GHEG GSL S
Sbjct: 290 EHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQQYYKSNPGHYLGHLIGHEGPGSLLSE 349
Query: 361 LKGRGWATSISAGV--GDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQ 418
LK +GW ++ G G G F++++ LT+ GL + DII ++QYI+ LR
Sbjct: 350 LKSKGWVNTLVGGQKEGARGF------MFFIINVDLTEEGLLHVEDIILHMFQYIQKLRA 403
Query: 419 VSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEM 478
PQ+W+F+E +D+ + FRF +++ Y +++AG L YP V+ EY+ E + ++
Sbjct: 404 EGPQEWVFQECKDLNAVAFRFKDKERPRGYTSKIAGKLHYYPLNGVLTAEYLLEEFRPDL 463
Query: 479 IKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVS 538
I +L PEN+R+ +VSKSF D E W+G++Y +E I +++ W+N +++
Sbjct: 464 IDMVLDKLRPENVRVAIVSKSFEGKTD-RTEQWYGTQYKQEAIPEDVIQKWQN-ADLNGK 521
Query: 539 LQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFR 598
+LP++NEFIPT+F I A + D P I D + + W+K D+ F LP+A F
Sbjct: 522 FKLPTKNEFIPTNFEILA--LEKD--ATPYPALIKDTAMSKLWFKQDDKFFLPKACLNFE 577
Query: 599 INLKGGYDNVKNCILTELFIHLLKDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDK 658
Y + +C + L++ LLKD LNE Y A +A L + + L V G+NDK
Sbjct: 578 FFSPFAYVDPLHCNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDK 637
Query: 659 LPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLCQSFYDV 717
P+LL KI +F RF++IKE +R+L N +P H+ Y ++ + +
Sbjct: 638 QPILLKKITEKMATFEIDKKRFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTK 697
Query: 718 DEKLSILHGLSLADLMAFIPELRSQV 743
DE L ++L L AFIP+L S++
Sbjct: 698 DELKEALDDVTLPRLKAFIPQLLSRL 723
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation
pdb|2JG4|B Chain B, Substrate-Free Ide Structure In Its Closed Conformation
Length = 990
Score = 433 bits (1113), Expect = e-121, Method: Compositional matrix adjust.
Identities = 259/735 (35%), Positives = 398/735 (54%), Gaps = 70/735 (9%)
Query: 14 VIKSPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLXXXXXXXXXXXXXXXXXXXXX 73
+ KSP DKR YR +EL N + LL+ DP
Sbjct: 25 ITKSPEDKREYRGLELANGIKVLLISDP-------------------------------- 52
Query: 74 XXXXXXXXXXXKEVKGKGIFSQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTE 133
T K++AA+ V +GS DP GL+HF EHMLF+G+ +
Sbjct: 53 ---------------------TTDKSSAALDVHIGSLSDPPNIAGLSHFCEHMLFLGTKK 91
Query: 134 FPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAME 193
+P ENEY +LS+H GSSNA+T EHT Y+F++ E L+GAL RF+QFF+ PL +
Sbjct: 92 YPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLCPLFDESCKD 151
Query: 194 REVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSL-IGAMEKGINLQEQ 252
REV AVDSE + + NDA RL QL+ T H F+KF GNK +L ++GI+++++
Sbjct: 152 REVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQE 211
Query: 253 IMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACK- 311
++K + YY LM + V+G E LD L + VV+LF+ V P+F + K
Sbjct: 212 LLKFHSAYYSSNLMAVCVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQ 271
Query: 312 LFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSIS 371
L+++ +KD+ L +T+ +P L + Y YL HL+GHEG GSL S LK +GW ++
Sbjct: 272 LYKIVPIKDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLV 331
Query: 372 AGV--GDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKEL 429
G G G F++++ LT+ GL + DII ++QYI+ LR PQ+W+F+E
Sbjct: 332 GGQKEGARGF------MFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQEC 385
Query: 430 QDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPE 489
+D+ + FRF +++ Y +++AG L YP E V+ EY+ E + ++I+ +L PE
Sbjct: 386 KDLNAVAFRFKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPE 445
Query: 490 NMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIP 549
N+R+ +VSKSF D E W+G++Y +E I +++ W+N +++ +LP++NEFIP
Sbjct: 446 NVRVAIVSKSFEGKTD-RTEEWYGTQYKQEAIPDEVIKKWQN-ADLNGKFKLPTKNEFIP 503
Query: 550 TDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVK 609
T+F I + + P I D + + W+K D+ F LP+A F Y +
Sbjct: 504 TNFEI----LPLEKEATPYPALIKDTAMSKLWFKQDDKFFLPKACLNFEFFSPFAYVDPL 559
Query: 610 NCILTELFIHLLKDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAI 669
+C + L++ LLKD LNE Y A +A L + + L V G+NDK P+LL KI+
Sbjct: 560 HCNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEK 619
Query: 670 AKSFLPSDDRFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLS 728
+F + RF++IKE +R+L N +P H+ Y ++ + + DE L ++
Sbjct: 620 MATFEIDEKRFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVT 679
Query: 729 LADLMAFIPELRSQV 743
L L AFIP+L S++
Sbjct: 680 LPRLKAFIPQLLSRL 694
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G47|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G48|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G48|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G49|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G49|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G54|A Chain A, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G54|B Chain B, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G56|A Chain A, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2G56|B Chain B, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2JBU|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|2JBU|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|3E50|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
pdb|3E50|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
Length = 990
Score = 431 bits (1109), Expect = e-121, Method: Compositional matrix adjust.
Identities = 258/735 (35%), Positives = 398/735 (54%), Gaps = 70/735 (9%)
Query: 14 VIKSPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLXXXXXXXXXXXXXXXXXXXXX 73
+ KSP DKR YR +EL N + LL+ DP
Sbjct: 25 ITKSPEDKREYRGLELANGIKVLLISDP-------------------------------- 52
Query: 74 XXXXXXXXXXXKEVKGKGIFSQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTE 133
T K++AA+ V +GS DP GL+HF +HMLF+G+ +
Sbjct: 53 ---------------------TTDKSSAALDVHIGSLSDPPNIAGLSHFCQHMLFLGTKK 91
Query: 134 FPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAME 193
+P ENEY +LS+H GSSNA+T EHT Y+F++ E L+GAL RF+QFF+ PL +
Sbjct: 92 YPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLCPLFDESCKD 151
Query: 194 REVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSL-IGAMEKGINLQEQ 252
REV AVDSE + + NDA RL QL+ T H F+KF GNK +L ++GI+++++
Sbjct: 152 REVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQE 211
Query: 253 IMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACK- 311
++K + YY LM + V+G E LD L + VV+LF+ V P+F + K
Sbjct: 212 LLKFHSAYYSSNLMAVCVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQ 271
Query: 312 LFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSIS 371
L+++ +KD+ L +T+ +P L + Y YL HL+GHEG GSL S LK +GW ++
Sbjct: 272 LYKIVPIKDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLV 331
Query: 372 AGV--GDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKEL 429
G G G F++++ LT+ GL + DII ++QYI+ LR PQ+W+F+E
Sbjct: 332 GGQKEGARGF------MFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQEC 385
Query: 430 QDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPE 489
+D+ + FRF +++ Y +++AG L YP E V+ EY+ E + ++I+ +L PE
Sbjct: 386 KDLNAVAFRFKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPE 445
Query: 490 NMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIP 549
N+R+ +VSKSF D E W+G++Y +E I +++ W+N +++ +LP++NEFIP
Sbjct: 446 NVRVAIVSKSFEGKTD-RTEEWYGTQYKQEAIPDEVIKKWQN-ADLNGKFKLPTKNEFIP 503
Query: 550 TDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVK 609
T+F I + + P I D + + W+K D+ F LP+A F Y +
Sbjct: 504 TNFEI----LPLEKEATPYPALIKDTAMSKLWFKQDDKFFLPKACLNFEFFSPFAYVDPL 559
Query: 610 NCILTELFIHLLKDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAI 669
+C + L++ LLKD LNE Y A +A L + + L V G+NDK P+LL KI+
Sbjct: 560 HCNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEK 619
Query: 670 AKSFLPSDDRFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLS 728
+F + RF++IKE +R+L N +P H+ Y ++ + + DE L ++
Sbjct: 620 MATFEIDEKRFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVT 679
Query: 729 LADLMAFIPELRSQV 743
L L AFIP+L S++
Sbjct: 680 LPRLKAFIPQLLSRL 694
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin
Length = 939
Score = 245 bits (625), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 187/739 (25%), Positives = 325/739 (43%), Gaps = 83/739 (11%)
Query: 12 EIVIKSPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLXXXXXXXXXXXXXXXXXXX 71
E + KS D R Y+ I L+N + LLV DP
Sbjct: 9 ETIRKSDKDNRQYQAIRLDNGMVVLLVSDP------------------------------ 38
Query: 72 XXXXXXXXXXXXXKEVKGKGIFSQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGS 131
Q K+ +A+ V +GS DP QGLAH+LEHM MGS
Sbjct: 39 -----------------------QAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGS 75
Query: 132 TEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEA 191
++P + YL HGGS NA T T ++ E++ + L GA+ R + PL+ +
Sbjct: 76 KKYPQADSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKY 135
Query: 192 MEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQE 251
ERE AV++E A D R+ Q+ T H +KF GN ++L + + G +Q+
Sbjct: 136 AERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETL--SDKPGNPVQQ 193
Query: 252 QIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACK 311
+ + YY LMK V+ +PL L + F V KP+ TV + A K
Sbjct: 194 ALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVP-VVTDAQK 252
Query: 312 LFRLEAVKDV--HILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATS 369
+ V + +L + + + ++ K+++ + +L+G+ G+L +L+ +G
Sbjct: 253 GIIIHYVPALPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEG 312
Query: 370 ISAGV-----GDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKW 424
ISA G+ G + +S LTD GL ++ ++ Y+ LLR+ K
Sbjct: 313 ISANSDPIVNGNSG--------VLAISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQ 364
Query: 425 IFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLG 484
F EL ++ +++FR+ DY LA ++ P EH + + + +D + +K L
Sbjct: 365 YFDELANVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVKERLA 424
Query: 485 FFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQ 544
P+N RI +S ++ ++ + Y + IS W+ D++L LP
Sbjct: 425 MMTPQNARIWYISPKEPHNKTAYF---VDAPYQVDKISAQTFADWQK-KAADIALSLPEL 480
Query: 545 NEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKL-PRANTYFRINLKG 603
N +IP DFS+ ++ D P I+DE +R Y F P+A+ +
Sbjct: 481 NPYIPDDFSLIKSEKKYD-----HPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPK 535
Query: 604 GYDNVKNCILTELFIHLLKDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLL 663
D+ +N ++ L +L L+++ QASV + S + ++ L + G+ +LP L
Sbjct: 536 AMDSARNQVMFALNDYLAGLALDQLSNQASVGGISFSTNA-NNGLMVNANGYTQRLPQLF 594
Query: 664 SKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQ-SFYDVDEKLS 722
+L S+ ++D+ + K + + + + + Q+L Q ++ DE+
Sbjct: 595 QALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSRDERRK 654
Query: 723 ILHGLSLADLMAFIPELRS 741
IL ++L +++A+ L+S
Sbjct: 655 ILPSITLKEVLAYRDALKS 673
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
pdb|3HDI|B Chain B, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
Length = 421
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 8/199 (4%)
Query: 93 FSQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSN 152
S + + + VG GS + E G++HFLEHM F G T E + GG N
Sbjct: 18 MSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKG-TNTRSAQEIAEFFDSIGGQVN 76
Query: 153 AYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDAC 212
A+T E+TCY+ ++ + A+ S F + E +E+E V E
Sbjct: 77 AFTSKEYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMVDDTPDD 136
Query: 213 RLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIG 272
+ L + H+ ++G +E + E +++ YM+ + G ++ +
Sbjct: 137 IVHDLLSSATYGKHSLG-------YPILGTVETLNSFNEGMLRHYMDRFYTGDYVVISVA 189
Query: 273 GEPLDTLQSWVVELFANVR 291
G D L + E F+ V+
Sbjct: 190 GNVHDELIDKIKETFSQVK 208
>pdb|3EOQ|A Chain A, The Crystal Structure Of Putative Zinc Protease Beta-
Subunit From Thermus Thermophilus Hb8
pdb|3EOQ|B Chain B, The Crystal Structure Of Putative Zinc Protease Beta-
Subunit From Thermus Thermophilus Hb8
Length = 406
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/309 (23%), Positives = 116/309 (37%), Gaps = 32/309 (10%)
Query: 92 IFSQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSS 151
+ + A V G+ + E G++HFLEH +F G E D + + G
Sbjct: 17 VVPGARSVALGYFVKTGARDETKEESGVSHFLEHXVFKGP-EDXDALAVNRAFDRXGAQY 75
Query: 152 NAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDA 211
NA+T E T Y+ + EF L F++ + P ++ E + E L + E A D
Sbjct: 76 NAFTSEEATVYYGAVLPEFAYDLLGLFAKL-LRPALREEDFQTEKLVILEEI--ARYQDR 132
Query: 212 CRLQQLQCHTSQL--GHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLV 269
+ ++ GH G ++S+ +G + L N L
Sbjct: 133 PGFXAYEWARARFFQGHPLGNSVLGTRESITALTREGXAAYHRRRYLPKN------XVLA 186
Query: 270 VIGGEPLDTLQSWVVELFANVRKG------PQIKPQFTVEGTIWKACKLFRLEAVKDVHI 323
G D L + L +G P + P F VE ++ +
Sbjct: 187 ATGRVDFDRLLAEAERLTEAWPEGEAERAYPPLTPAFGVEERPYEKAR-----------A 235
Query: 324 LDLTWTLPCL-HQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRS 382
L L P + +QE + LAHLLG EG G LH L +G A S G+ E R+
Sbjct: 236 LYLVALFPGVAYQEEARFPGQVLAHLLGEEGSGRLHFALVDKGLAEVASFGL--EEADRA 293
Query: 383 SIAYIFVMS 391
+ +V +
Sbjct: 294 GTFHAYVQA 302
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|D Chain D, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|F Chain F, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|H Chain H, Yeast Mitochondrial Processing Peptidase
Length = 443
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 103/249 (41%), Gaps = 24/249 (9%)
Query: 95 QTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAY 154
T A + V GS + V+ G AHFLEH+ F G+ P + + + G NAY
Sbjct: 25 NTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQG-IELEIENIGSHLNAY 83
Query: 155 TETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMERE--VLAVDSEFNQALQNDAC 212
T E+T Y+ + +E + A+ S ++ A+ERE V+ +SE + ++
Sbjct: 84 TSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVV 143
Query: 213 --RLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMN-YYQGGLMKLV 269
L ++ LG ++++G ++ ++ +K Y+ Y+G M L
Sbjct: 144 FDHLHEITYKDQPLG-----------RTILGPIKNIKSITRTDLKDYITKNYKGDRMVLA 192
Query: 270 VIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRL---EAVKDVHIL-- 324
G + L + + F +V K P + G + C+ R + HI
Sbjct: 193 GAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFCRGERFIKENTLPTTHIAIA 252
Query: 325 --DLTWTLP 331
++W+ P
Sbjct: 253 LEGVSWSAP 261
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 443
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 103/249 (41%), Gaps = 24/249 (9%)
Query: 95 QTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAY 154
T A + V GS + V+ G AHFL+H+ F G+ P + + + G NAY
Sbjct: 25 NTSSATVGIFVDAGSRAENVKNNGTAHFLQHLAFKGTQNRPQQG-IELEIENIGSHLNAY 83
Query: 155 TETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMERE--VLAVDSEFNQALQNDAC 212
T E+T Y+ + +E + A+ S ++ A+ERE V+ +SE + ++
Sbjct: 84 TSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVV 143
Query: 213 --RLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMN-YYQGGLMKLV 269
L ++ LG ++++G ++ ++ +K Y+ Y+G M L
Sbjct: 144 FDHLHEITYKDQPLG-----------RTILGPIKNIKSITRTDLKDYITKNYKGDRMVLA 192
Query: 270 VIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRL---EAVKDVHIL-- 324
G + L + + F +V K P + G + C+ R + HI
Sbjct: 193 GAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFCRGERFIKENTLPTTHIAIA 252
Query: 325 --DLTWTLP 331
++W+ P
Sbjct: 253 LEGVSWSAP 261
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
pdb|3AMJ|A Chain A, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
Length = 437
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 121/299 (40%), Gaps = 51/299 (17%)
Query: 107 MGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEI 166
+GS + G+AH LEHM+F G+ + E+ ++ GG NA+T ++T Y+ ++
Sbjct: 37 VGSMDETTGTTGVAHALEHMMFKGTKDV-GPGEFSKRVAAMGGRDNAFTTRDYTAYYQQV 95
Query: 167 KREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSE-FNQALQ----------NDACRLQ 215
L S +M +EA L VD E F + +Q +D R +
Sbjct: 96 PSSRL------------SDVMGLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSK 143
Query: 216 QLQC--HTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQ-IMKLYMNYYQGGLMKLVVIG 272
+ S + H + + +IG M N+ Q + Y +Y +VV+G
Sbjct: 144 AYEALMAASYVAHPY-------RVPVIGWMNDIQNMTAQDVRDWYKRWYGPNNATVVVVG 196
Query: 273 G---EPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWT 329
E + L A V + P K Q + + ++A ++ L L W
Sbjct: 197 DVEHEAVFRLAEQTYGKLARV-EAPARKQQGEPQQA---GVRRVTVKAPAELPYLALAWH 252
Query: 330 LPCLHQEYLKKSEDY-----LAHLL-GHEGRGSLHSFLKGRGWATSISAGVGDEGMHRS 382
+P + L KS D LA +L G++G ++G A +SAG G + + R
Sbjct: 253 VPAIVD--LDKSRDAYALEILAAVLDGYDGARMTRQLVRGNKHA--VSAGAGYDSLSRG 307
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
pdb|3AMI|B Chain B, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
Length = 445
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 121/299 (40%), Gaps = 51/299 (17%)
Query: 107 MGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEI 166
+GS + G+AH LEHM+F G+ + E+ ++ GG NA+T ++T Y+ ++
Sbjct: 37 VGSMDETTGTTGVAHALEHMMFKGTKDV-GPGEFSKRVAAMGGRDNAFTTRDYTAYYQQV 95
Query: 167 KREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSE-FNQALQ----------NDACRLQ 215
L S +M +EA L VD E F + +Q +D R +
Sbjct: 96 PSSRL------------SDVMGLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSK 143
Query: 216 QLQC--HTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQ-IMKLYMNYYQGGLMKLVVIG 272
+ S + H + + +IG M N+ Q + Y +Y +VV+G
Sbjct: 144 AYEALMAASYVAHPY-------RVPVIGWMNDIQNMTAQDVRDWYKRWYGPNNATVVVVG 196
Query: 273 G---EPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWT 329
E + L A V + P K Q + + ++A ++ L L W
Sbjct: 197 DVEHEAVFRLAEQTYGKLARV-EAPARKQQGEPQQA---GVRRVTVKAPAELPYLALAWH 252
Query: 330 LPCLHQEYLKKSEDY-----LAHLL-GHEGRGSLHSFLKGRGWATSISAGVGDEGMHRS 382
+P + L KS D LA +L G++G ++G A +SAG G + + R
Sbjct: 253 VPAIVD--LDKSRDAYALEILAAVLDGYDGARMTRQLVRGNKHA--VSAGAGYDSLSRG 307
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 446
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 90 KGIFSQTKKAAAAMC-----VGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYL 144
G+ +++++ C + GS + + G +FLEH+ F G+ P +N + +
Sbjct: 21 NGVRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFLEHLAFKGTKNRP-QNALEKEV 79
Query: 145 SKHGGSSNAYTETEHTCYHFE 165
G NAY+ EHT Y+ +
Sbjct: 80 ESMGAHLNAYSSREHTAYYIK 100
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 446
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 105 VGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHF 164
+ GS + + G +F+EH+ F G+ P N + + G NAY+ EHT Y+
Sbjct: 41 IDAGSRYESEKNNGAGYFVEHLAFKGTKNRPG-NALEKEVESMGAHLNAYSTREHTAYYI 99
Query: 165 EIKREFLKGALMRFSQFFISPLMKVEAMERE 195
+ + L A+ + + ++ +E+E
Sbjct: 100 KALSKDLPKAVELLADIVQNCSLEDSQIEKE 130
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 480
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 105 VGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHF 164
+ GS + + G +F+EH+ F G+ P N + + G NAY+ EHT Y+
Sbjct: 75 IDAGSRYESEKNNGAGYFVEHLAFKGTKNRPG-NALEKEVESMGAHLNAYSTREHTAYYI 133
Query: 165 E 165
+
Sbjct: 134 K 134
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|M Chain M, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|A Chain A, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|A Chain A, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|A Chain A, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|A Chain A, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|AA Chain a, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 446
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 105 VGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHF 164
+ GS + + G +F+EH+ F G+ P N + + G NAY+ EHT Y+
Sbjct: 41 IDAGSRYESEKNNGAGYFVEHLAFKGTKNRPG-NALEKEVESMGAHLNAYSTREHTAYYI 99
Query: 165 EIKREFLKGALMRFSQFFISPLMKVEAMERE 195
+ + L A+ + + ++ +E+E
Sbjct: 100 KALSKDLPKAVELLADIVQNCSLEDSQIEKE 130
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|N Chain N, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|N Chain N, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|N Chain N, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|N Chain N, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|A Chain A, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|N Chain N, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|A Chain A, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|N Chain N, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|A Chain A, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|N Chain N, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|A Chain A, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|N Chain N, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|A Chain A, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|N Chain N, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|A Chain A, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|N Chain N, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|A Chain A, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|N Chain N, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|A Chain A, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|N Chain N, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|A Chain A, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|N Chain N, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 446
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 105 VGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHF 164
+G GS + + G +F+EH+ F G+ + P ++ + G N YT E T ++
Sbjct: 41 IGAGSRYENEKNNGAGYFVEHLAFKGTKKRPCA-AFEKEVESMGAHFNGYTSREQTAFYI 99
Query: 165 E 165
+
Sbjct: 100 K 100
>pdb|2FGE|A Chain A, Crystal Structure Of Presequence Protease Prep From
Arabidopsis Thaliana
pdb|2FGE|B Chain B, Crystal Structure Of Presequence Protease Prep From
Arabidopsis Thaliana
Length = 995
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 113 PVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGS----SNAYTETEHTCY 162
P ++ G+ H L+H + GS ++P + + L GS NA+T + TCY
Sbjct: 69 PKDSTGIPHILQHSVLCGSRKYPVKEPFVELLK---GSLHTFLNAFTYPDRTCY 119
>pdb|1NKV|A Chain A, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
pdb|1NKV|B Chain B, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
pdb|1NKV|C Chain C, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
Length = 256
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 14/78 (17%)
Query: 394 LTDSGLEKIFDIIGFVYQYIKLLRQ-----VSPQKWIFKELQDIGNMEFRFAEEQPQDDY 448
LT GL FD +G+ L Q KW+ R+ E P DD+
Sbjct: 165 LTLPGLVGAFDDLGYDVVEXVLADQEGWDRYEAAKWLTXR---------RWLEANPDDDF 215
Query: 449 AAELAGNLLIYPAEHVIY 466
AAE+ L I P +V Y
Sbjct: 216 AAEVRAELNIAPKRYVTY 233
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 340 KSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMH 380
+E Y +LG +GRG++ S +G WA G+ GMH
Sbjct: 85 SAELYAVKVLGADGRGAISSIAQGLEWA-------GNNGMH 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,719,863
Number of Sequences: 62578
Number of extensions: 924971
Number of successful extensions: 2307
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2186
Number of HSP's gapped (non-prelim): 41
length of query: 744
length of database: 14,973,337
effective HSP length: 106
effective length of query: 638
effective length of database: 8,340,069
effective search space: 5320964022
effective search space used: 5320964022
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)