Query 004577
Match_columns 744
No_of_seqs 282 out of 2336
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 01:41:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0959 N-arginine dibasic con 100.0 1E-106 2E-111 903.9 64.7 676 1-743 5-685 (974)
2 COG1025 Ptr Secreted/periplasm 100.0 4E-105 9E-110 873.4 66.1 665 9-743 9-678 (937)
3 PRK15101 protease3; Provisiona 100.0 9.2E-92 2E-96 846.3 76.4 665 10-742 30-697 (961)
4 TIGR02110 PQQ_syn_pqqF coenzym 100.0 9.2E-51 2E-55 453.0 52.8 512 25-674 1-526 (696)
5 PTZ00432 falcilysin; Provision 100.0 3.8E-49 8.2E-54 468.7 52.2 576 98-708 115-819 (1119)
6 COG0612 PqqL Predicted Zn-depe 100.0 2E-49 4.3E-54 436.6 36.6 407 23-500 16-432 (438)
7 KOG0960 Mitochondrial processi 100.0 1.1E-47 2.4E-52 377.4 31.7 408 21-499 31-449 (467)
8 COG1026 Predicted Zn-dependent 100.0 6.2E-42 1.3E-46 378.0 41.4 581 98-708 42-681 (978)
9 KOG2067 Mitochondrial processi 100.0 8.7E-41 1.9E-45 329.3 26.4 398 23-498 24-443 (472)
10 KOG2019 Metalloendoprotease HM 100.0 2.4E-39 5.2E-44 337.3 38.5 587 105-715 77-721 (998)
11 KOG0961 Predicted Zn2+-depende 100.0 4.8E-26 1E-30 238.0 31.7 588 98-711 41-699 (1022)
12 PRK15101 protease3; Provisiona 100.0 2E-26 4.4E-31 278.7 31.8 393 22-495 521-923 (961)
13 KOG2583 Ubiquinol cytochrome c 99.9 5.7E-24 1.2E-28 211.5 33.0 391 23-498 22-419 (429)
14 PF00675 Peptidase_M16: Insuli 99.9 3.4E-23 7.3E-28 192.7 14.7 137 98-235 12-148 (149)
15 PF05193 Peptidase_M16_C: Pept 99.8 4.3E-20 9.3E-25 178.5 19.0 178 248-433 2-184 (184)
16 COG1026 Predicted Zn-dependent 99.3 9.5E-10 2.1E-14 124.0 28.4 378 98-497 548-957 (978)
17 PTZ00432 falcilysin; Provision 99.3 2.2E-09 4.7E-14 129.6 30.7 378 98-499 681-1103(1119)
18 KOG2019 Metalloendoprotease HM 99.0 2.4E-07 5.1E-12 99.4 28.0 380 98-499 582-985 (998)
19 COG1025 Ptr Secreted/periplasm 98.9 4.5E-06 9.7E-11 94.6 31.9 372 98-498 526-908 (937)
20 COG0612 PqqL Predicted Zn-depe 98.8 1.6E-06 3.4E-11 96.0 25.6 360 320-742 37-420 (438)
21 KOG0959 N-arginine dibasic con 98.8 7.3E-06 1.6E-10 94.6 29.8 359 98-485 533-906 (974)
22 PF08367 M16C_assoc: Peptidase 98.5 3.4E-07 7.3E-12 92.3 9.6 169 547-729 53-241 (248)
23 PF03410 Peptidase_M44: Protei 98.2 3.2E-05 6.8E-10 80.2 14.6 164 106-296 26-195 (590)
24 KOG2067 Mitochondrial processi 98.1 4.2E-05 9E-10 77.8 13.6 328 356-742 85-434 (472)
25 TIGR02110 PQQ_syn_pqqF coenzym 98.1 6E-05 1.3E-09 86.0 16.0 167 573-741 4-182 (696)
26 PHA03081 putative metalloprote 98.0 9.9E-05 2.1E-09 76.7 14.4 164 106-296 26-195 (595)
27 KOG0961 Predicted Zn2+-depende 98.0 0.00021 4.6E-09 77.3 16.1 313 155-485 631-967 (1022)
28 PF00675 Peptidase_M16: Insuli 98.0 7.8E-05 1.7E-09 69.0 11.2 132 579-712 1-137 (149)
29 KOG0960 Mitochondrial processi 97.0 0.55 1.2E-05 48.7 25.0 356 320-742 53-438 (467)
30 PF08367 M16C_assoc: Peptidase 96.4 0.051 1.1E-06 54.8 12.7 106 98-205 91-208 (248)
31 PF05193 Peptidase_M16_C: Pept 96.3 0.041 8.8E-07 52.2 11.4 95 592-687 79-184 (184)
32 KOG2583 Ubiquinol cytochrome c 90.2 27 0.00059 36.8 28.0 346 317-740 39-408 (429)
33 PF09026 CENP-B_dimeris: Centr 58.5 3.2 7E-05 33.8 0.0 19 60-78 12-30 (101)
34 PF09186 DUF1949: Domain of un 53.6 42 0.00091 24.4 5.4 50 133-182 4-53 (56)
35 PRK11512 DNA-binding transcrip 43.4 1.1E+02 0.0023 27.7 7.5 69 355-434 72-140 (144)
36 PRK03573 transcriptional regul 39.6 1.3E+02 0.0028 27.0 7.5 67 355-433 64-130 (144)
37 PF09026 CENP-B_dimeris: Centr 37.2 11 0.00024 30.8 0.0 9 118-126 45-53 (101)
38 PRK10870 transcriptional repre 31.6 1.9E+02 0.0041 27.2 7.3 77 345-433 77-155 (176)
39 TIGR02648 rep_term_tus DNA rep 25.0 3.1E+02 0.0066 28.1 7.6 54 227-290 156-210 (300)
40 cd04922 ACT_AKi-HSDH-ThrA_2 AC 20.7 3.3E+02 0.0072 20.0 5.7 45 139-183 20-65 (66)
41 PRK13777 transcriptional regul 20.1 4.2E+02 0.0091 25.2 7.3 68 355-434 77-152 (185)
No 1
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-106 Score=903.92 Aligned_cols=676 Identities=44% Similarity=0.754 Sum_probs=641.9
Q ss_pred CCCCCCcccCCCccccCCCccccccEEEeCCCCEEEEEeCCCCCcCCccccccCCCccccccccCccccccccccccccc
Q 004577 1 MGGNGCVWSSDEIVIKSPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDE 80 (744)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (744)
|+++....+.+..|+|+..|.|.||+++|+|||+|++++||.. +
T Consensus 5 ~~~~~~~~~~~~~~~k~~~d~r~yr~~~L~Ngl~alLisDp~t--------------D---------------------- 48 (974)
T KOG0959|consen 5 MSGNIVLKREDVSIVKSLGDTREYRGIELTNGLRALLISDPKT--------------D---------------------- 48 (974)
T ss_pred cccchhhhhcccccccCCCCccceeEEEecCCceEEEecCCCC--------------C----------------------
Confidence 6778888889989999999999999999999999999999998 7
Q ss_pred cchhhhhcccccccccceEEEEEEecCCCCCCCCCCCCchHHHHHhcccCccCCCChhHHHHHHHhcCCccceeeCCCee
Q 004577 81 NDTEKEVKGKGIFSQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHT 160 (744)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~v~~Gs~~dp~~~~GlAhllehmlf~Gs~~~~~~~~~~~~l~~~g~~~na~t~~d~t 160 (744)
++++++.|.+||+.||.+.+|||||+|||+|+||+|||.++.+..++.++||+.||+|+.++|
T Consensus 49 -----------------~ssaal~V~vGS~~DP~dl~GLAHF~EHMlFmGS~KYP~En~y~~~lsk~gGssNA~T~~e~T 111 (974)
T KOG0959|consen 49 -----------------KSSAALDVKVGSFSDPEDLQGLAHFCEHMLFMGSEKYPDENEYSKFLSKNGGSSNAYTDSEHT 111 (974)
T ss_pred -----------------ccceeeeeeccccCCccccccHHHHHHHHHhhccccCCCcchhHHHHHhcCCccccccccccc
Confidence 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeChhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhCCCCCCCCCCCcCChhhhh
Q 004577 161 CYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLI 240 (744)
Q Consensus 161 ~~~~~~~~~~l~~~l~~l~~~~~~P~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~ 240 (744)
+|+|.+..++|+.||++|+++|.+|+|.++.++||+.+|++|++++.+++.||..++.+.++.++|||++|++||.++|.
T Consensus 112 ~y~F~V~~~~l~~ALDrFaqFf~~Plf~~~a~eREv~AVdSE~~~nl~~D~wr~~ql~~~l~~~~hp~~kF~tGN~~tL~ 191 (974)
T KOG0959|consen 112 NYYFDVQHDHLEGALDRFAQFFSDPLFNKSATEREVGAVDSEHEKNLNSDGWRFDQLLRSLSNPGHPYSKFSTGNKKTLL 191 (974)
T ss_pred eEEEecchHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHHHhccCcchhHHHHHHHHhcCCCCcchhccccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-hhhcCccHHHHHHHHHHhcccCCCcEEEEEeCCCHHHHHHHHHHHhccccCCCCCCCCCcccccccc---cceEEEEe
Q 004577 241 G-AMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWK---ACKLFRLE 316 (744)
Q Consensus 241 ~-~~~~~~~~~~~l~~f~~~~y~~~~~~lvi~G~~~~~~l~~lv~~~f~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~ 316 (744)
. |.++ .+++.|++||++||++++|++||+|+.+++.++.++.+.|+.+++...+.|.+. .+|+. .++.+.+.
T Consensus 192 ~~p~~~--~~r~~L~kF~k~~Yssn~M~l~i~G~eslD~Le~lv~~~F~~i~N~~~~~p~f~--~~p~~~e~~~~~~~v~ 267 (974)
T KOG0959|consen 192 EGPREI--DLRDELLKFYKNWYSSNIMTLVIVGKESLDVLESLVTRLFDEISNKKKPRPVFP--EPPFLPEELKKLVRVV 267 (974)
T ss_pred hccccc--hHHHHHHHHHHhhcccccceEEEEcCCChhHHHHHHHHHcccccccCCCCCccc--CCCCChHHhCcEEEEE
Confidence 4 3322 579999999999999999999999999999999999999999999988887773 33333 67888899
Q ss_pred ecccccEEEEEEEcCCCchhhhcchHHHHHHHhcCCCCchHHHHHHhcCCcceeecccCCCcCCccccccEEEEEEEeCc
Q 004577 317 AVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTD 396 (744)
Q Consensus 317 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~l~~lLg~~~~~~L~~~Lr~~gl~y~~~~~~~~~~~~~~~~~g~f~i~~~~~~ 396 (744)
|.++...+.|.|++|+....|+..|.+++++++|++++|+|...|+++||+.++.++......+++ .|.|.+.+++
T Consensus 268 pik~~~~l~is~~~p~~~~~y~~kP~~y~~hLigheg~GSL~~~Lk~~gw~~sl~a~~~~~as~~~----~f~v~idLtd 343 (974)
T KOG0959|consen 268 PIKDGRSLMISWPVPPLNHHYKSKPLRYLSHLIGHEGPGSLLSYLKRLGWATSLEAGIPEFASGYS----FFNVSIDLTD 343 (974)
T ss_pred eccccceEEEEEecCCcccccccCcHHHHHHHhccCCcchHHHHHHHhhchheeecCCCccccccc----eEEEEEEecc
Confidence 999999999999999999999999999999999999999999999999999999998886554555 9999999999
Q ss_pred hhhhcHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhcccccccCCCcHHHHHHHHHhcCCCCCccccccccccccCCH
Q 004577 397 SGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDE 476 (744)
Q Consensus 397 ~g~~~~~~v~~~i~~~l~~l~~~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~i~~vt~ 476 (744)
+|++++++|+..++++|+.|+..|+..|.+++...+....|+|+.+..|.+++..++.+|+.||+++++.+.+.+..+++
T Consensus 344 ~G~e~~~~ii~~~f~yi~~l~~~~~~~~i~~E~~~~~~~~Frf~~k~~p~~~~~~~~~nlq~~P~~~il~~~~ll~~~~p 423 (974)
T KOG0959|consen 344 EGLEHVDEIIGLVFNYIKLLQSAGPEKWIFKELQLISEVKFRFQDKEPPMEYASEIASNLQYYPVEDVLTGSYLLTEFDP 423 (974)
T ss_pred ccchhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhhhhheeecccCCcHHHHHHHHhhcccCChHHhhcchhhhhhcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCccceEEEEEeCCCCCCCCccccceeeceeeeecCChHHHHhhcCCCCCCCCccCCCCCCCCCCCccccc
Q 004577 477 EMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRA 556 (744)
Q Consensus 477 ~~i~~~~~~l~~~n~~i~i~~~~~~~~~~~~~e~~~~~~y~~~~i~~~~l~~~~~~~~~~~~l~lP~~N~~ip~~~~l~~ 556 (744)
+.|+.++..|.|.|+++++++..+ .++++..|+|||+.|.+++||+++++.|.+... ++++.||.+|.|||++|++.+
T Consensus 424 ~~i~~~~~~L~p~n~~v~~~s~~~-~~~~d~~E~~ygt~y~~e~i~~~~~~~~~~~~~-~~~l~lP~~nefI~t~f~~~~ 501 (974)
T KOG0959|consen 424 DLIQEVLSSLVPSNMRVILVSRSF-EGKTDKAEPWYGTAYKVEDIPAEIIKEWENSHL-NPELHLPTPNEFIPTDFSILP 501 (974)
T ss_pred HHHHHHHHhcCcccceeeeeeecc-ccccccccceeccccccccCCHHHHHHhhccCc-cccccCCCCCccccccccccc
Confidence 999999999999999999999988 677999999999999999999999999955444 789999999999999999988
Q ss_pred cCCCCCCCCCCCCeEEeecCCeeEEeecCCccCCceeeEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 004577 557 NDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQASVAK 636 (744)
Q Consensus 557 ~~~~~~~~~~~~P~~~~~~~~~~vw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~~~~l~~~ll~~~l~e~~y~a~~ag 636 (744)
.+... ...|.++.+++..++||++|+.|++||+.+.+.|.+|....++.+.+++.+|..++.+.+.|..|+|..||
T Consensus 502 ~~~~~----~~~P~Li~~~~~~~lw~k~dd~f~~Pka~~~~~~~~p~~~~~~~~~~l~~l~~~~l~d~l~E~~Y~A~~aG 577 (974)
T KOG0959|consen 502 APIPK----LEYPVLISDTPFSELWYKQDDKFNVPKAYTKFDFICPGATQSPLNSVLSTLYVRLLKDQLNEYLYPALLAG 577 (974)
T ss_pred ccCcc----ccCCeeeecCCcceeEEecccccccchhheeeeecCcccccCHHHHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence 76533 35999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCceeEEEEEecCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHccccC-hhHHHHHHHHHhhcCCCC
Q 004577 637 LETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMK-PLSHSSYLRLQVLCQSFY 715 (744)
Q Consensus 637 l~~~~~~~~~gi~l~~~G~~~kl~~ll~~i~~~l~~~~~~~~~f~~~k~~~~~~~~n~~~~-p~~~a~~~~~~ll~~~~~ 715 (744)
++|+++.+..|+.++|+||++|++.+++.+.+.+.++.+++++|+.+|+.+.+.|+|.... |+.+|++.+..++.+..|
T Consensus 578 l~~~~~~s~~G~~~~v~Gfnekl~~ll~~~~~~~~~f~~~~~rf~iike~~~~~~~n~~~~~p~~~a~~~~~lll~~~~W 657 (974)
T KOG0959|consen 578 LTYSLSSSSKGVELRVSGFNEKLPLLLEKVVQMMANFELDEDRFEIIKELLKRELRNHAFDNPYQLANDYLLLLLEESIW 657 (974)
T ss_pred ceEEeeecCCceEEEEeccCcccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999996665 999999999999999999
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 004577 716 DVDEKLSILHGLSLADLMAFIPELRSQV 743 (744)
Q Consensus 716 ~~~~~~~~l~~it~~d~~~~~~~~~~~~ 743 (744)
+.++++++++.+|++|+..|...|++..
T Consensus 658 ~~~e~~~al~~~~le~~~~F~~~~~~~~ 685 (974)
T KOG0959|consen 658 SKEELLEALDDVTLEDLESFISEFLQPF 685 (974)
T ss_pred chHHHHHHhhcccHHHHHHHHHHHhhhh
Confidence 9999999999999999999999998753
No 2
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-105 Score=873.44 Aligned_cols=665 Identities=34% Similarity=0.564 Sum_probs=627.9
Q ss_pred cCCCccccCCCccccccEEEeCCCCEEEEEeCCCCCcCCccccccCCCccccccccCccccccccccccccccchhhhhc
Q 004577 9 SSDEIVIKSPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVK 88 (744)
Q Consensus 9 ~~~~~~~~~~~d~~~~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (744)
.....|++|..|.+.|+.++|+|||+|++++||.. +
T Consensus 9 ~~~~~i~~~~~d~r~y~~I~LpNGl~~LlisDP~a--------------~------------------------------ 44 (937)
T COG1025 9 PIVLTIHKPALDDRKYRAIKLPNGLRALLVSDPQA--------------D------------------------------ 44 (937)
T ss_pred cchhhcccCcccCcceeEEECCCCceEEEecCCCC--------------C------------------------------
Confidence 34457889999999999999999999999999999 8
Q ss_pred ccccccccceEEEEEEecCCCCCCCCCCCCchHHHHHhcccCccCCCChhHHHHHHHhcCCccceeeCCCeeEEEEEeCh
Q 004577 89 GKGIFSQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKR 168 (744)
Q Consensus 89 ~~~~~~~~~~~~~~l~v~~Gs~~dp~~~~GlAhllehmlf~Gs~~~~~~~~~~~~l~~~g~~~na~t~~d~t~~~~~~~~ 168 (744)
++++++.|++|+++||.+.+|||||+|||+|+||+|||.++.|..||++|||+.||+|..+.|+|+|++.+
T Consensus 45 ---------ks~aAL~V~vGs~~DP~e~~GLAHflEHmlfmGseKYP~~~~f~~fLskhgGs~NA~T~~~~T~fyFeV~~ 115 (937)
T COG1025 45 ---------KSSAALVVPVGSFDDPEEYPGLAHFLEHMLFMGSEKYPDEGGFSEFLSKHGGSHNASTAGERTAFYFEVEN 115 (937)
T ss_pred ---------ccceeEEeecCCCCChhhcccHHHHHHHHHHhcCccCCCccchHHHHHHcCCccccccCCCceeEEEEecH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhCCCCCCCCCCCcCChhhhhhhhhcCcc
Q 004577 169 EFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGIN 248 (744)
Q Consensus 169 ~~l~~~l~~l~~~~~~P~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~ 248 (744)
++|+.+|++|+++|.+|+|+++.++||+.+|.+|+..+..++.||+++..+..+.++||++||++||.+||.. +.|..
T Consensus 116 ~al~~ALDrFa~ff~~PLf~~e~~dRE~~AV~sE~~~~~~~D~~R~~~~~~~~~np~HP~srFs~GN~~TL~~--~p~~~ 193 (937)
T COG1025 116 DALEGALDRFADFFIEPLFNKEALDRERNAVNSEFTMNLTSDGWRMYQVQALTANPGHPLSKFSTGNLETLSD--KPGLV 193 (937)
T ss_pred HHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHhcCcCchHHHHHHHHHhhcCCCCCccccCCCChhhhcc--CCCch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999985 22457
Q ss_pred HHHHHHHHHHhcccCCCcEEEEEeCCCHHHHHHHHHHHhccccCCCCCCCCCcccccccc---cceEEEEeecccccEEE
Q 004577 249 LQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWK---ACKLFRLEAVKDVHILD 325 (744)
Q Consensus 249 ~~~~l~~f~~~~y~~~~~~lvi~G~~~~~~l~~lv~~~f~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~ 325 (744)
+.++|++||++||+|++|++||+|+.++++|.+++.++||.||++....+.. |.|+.. .++++.+.|..+...+.
T Consensus 194 v~~el~ef~~~~YSa~~M~lviyg~q~ldeL~~~a~~~F~~Ipn~~~~~p~~--p~p~~~d~~t~~ii~i~p~~~~~~L~ 271 (937)
T COG1025 194 VQQELKEFHEKHYSANNMKLVIYGNQPLDELAKLAADLFGDIPNRARKIPPI--PVPVVTDEQTGKIIHIVPAKPRPRLR 271 (937)
T ss_pred HHHHHHHHHHHhcChhheEEEEecCCCHHHHHHHHHHHhCcCCCCCCCCCCC--CCCCCChHHhCceEEeccCCCCceEE
Confidence 9999999999999999999999999999999999999999999877655554 223332 78888999999999999
Q ss_pred EEEEcCCCchhhhcchHHHHHHHhcCCCCchHHHHHHhcCCcceeecccCCCcCCccccccEEEEEEEeCchhhhcHHHH
Q 004577 326 LTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDI 405 (744)
Q Consensus 326 l~~~~~~~~~~~~~~~~~~l~~lLg~~~~~~L~~~Lr~~gl~y~~~~~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v 405 (744)
|.|++++....+...+.+++++|||++++|+|...|+++||+.+++++...... +.|.|.|.+.+|++|+++.++|
T Consensus 272 i~f~i~~~~~~~~~~~~~~~s~Lig~es~gsL~~~Lk~~Glit~l~a~~~~~~~----n~~~f~is~~LT~~Gl~~~~~V 347 (937)
T COG1025 272 IYFPIDDNSAKFRSKPDEYLSHLIGNESPGSLLAWLKKQGLITELSAGLDPISG----NYGVFAISYELTDKGLAHYDRV 347 (937)
T ss_pred EEEEcCCcccccccCCHHHHHHHhccCCCchHHHHHHhccchhhhccccccccC----CcceEEEEeehhhcchhhHHHH
Confidence 999999999888889999999999999999999999999999999998876543 3559999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHhhcccccccCCCcHHHHHHHHHhcCCCCCccccccccccccCCHHHHHHHHhc
Q 004577 406 IGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGF 485 (744)
Q Consensus 406 ~~~i~~~l~~l~~~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~i~~vt~~~i~~~~~~ 485 (744)
+..++++|+.++++|+..+.+++.+++....|++...+.+.+++..++.+|..++++.++.....+...++++++.++..
T Consensus 348 I~~~F~yl~~l~~~~~~~~~f~Elq~v~~l~f~y~~~t~~~~~~~~l~~~m~~~p~~~~~~~~~~~~~yd~~~~~~~l~~ 427 (937)
T COG1025 348 IALTFQYLNLLREKGIPKYTFDELQNVLDLDFRYPSKTRPMDYVSWLADNMEREPVEHTLYASLVLPRYDPKAIQERLAL 427 (937)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHhhhcccccCChHHHHHHHHHhcccCChhhhhchhhcccccCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999988899988899999999999999999
Q ss_pred cCccceEEEEEeCCCCCCCCccccceeeceeeeecCChHHHHhhcCCCCCCCCccCCCCCCCCCCCccccccCCCCCCCC
Q 004577 486 FMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVT 565 (744)
Q Consensus 486 l~~~n~~i~i~~~~~~~~~~~~~e~~~~~~y~~~~i~~~~l~~~~~~~~~~~~l~lP~~N~~ip~~~~l~~~~~~~~~~~ 565 (744)
+.|+|++++++++. ...++.+.||+++|.+..+..+.+..|+.... ..++.||.+|+|||.++++.+.....
T Consensus 428 ~~pen~R~~lis~~---~~~~~~a~~~~~py~v~~~~~~~~~~~~~~~~-~~~l~lP~~N~fIp~~~~~~~~~~~~---- 499 (937)
T COG1025 428 MTPENARLWLISKL---EEHDKAAYFYGFPYQVDDYTAQPLDAWQQKAD-SIELSLPEPNPFIPDDVSLIKSEKKF---- 499 (937)
T ss_pred hCccceEEEEecCC---CCccccceeecCcceecchhhhhhhhhhcccc-cccccCCCCCCCCCccccccccccCC----
Confidence 88999999999995 55689999999999999999999999998776 67888999999999999996554443
Q ss_pred CCCCeEEeecCCeeEEeecCCccCC-ceeeEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcceEEEEEEe
Q 004577 566 VTSPTCIIDEPLIRFWYKLDNTFKL-PRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQASVAKLETSVSIF 644 (744)
Q Consensus 566 ~~~P~~~~~~~~~~vw~~~d~~f~~-Pk~~i~~~~~~~~~~~~~~~~~~~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~ 644 (744)
+.|.++.+.++.++||++++.|.+ ||+.+++.|++|....|+++.|++.|++.++++.|.+..|+|.+||++|+++.+
T Consensus 500 -~~p~ll~~~~~~~~wy~~~d~F~~~PK~~v~~~irsp~~~~s~r~~Vl~~l~~~la~dal~~~~y~A~~aG~sfs~~~~ 578 (937)
T COG1025 500 -TFPQLLSEDPNLRLWYLKEDYFAVEPKASVSLAIRSPHASRSPRNQVLTELYAYLANDALDKLSYQASLAGLSFSLAAN 578 (937)
T ss_pred -CCchhhhcCCCceEEEecCCccccCCcceeEEEEeCcccccCHHHHHHHHHHHHHHHHHHHhhhhHHHhcceEEEeecC
Confidence 489999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEEecCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHccccC-hhHHHHHHHHHhhcCCCCCHHHHHHH
Q 004577 645 SDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMK-PLSHSSYLRLQVLCQSFYDVDEKLSI 723 (744)
Q Consensus 645 ~~gi~l~~~G~~~kl~~ll~~i~~~l~~~~~~~~~f~~~k~~~~~~~~n~~~~-p~~~a~~~~~~ll~~~~~~~~~~~~~ 723 (744)
.+|+.|+++||++++++++..+++.+.+..+++++|..+|+++.+.|++.... |++++.+.+..++.+++|+.++++++
T Consensus 579 ~~Gl~ltisGft~~lp~L~~~~l~~l~~~~~~~~~f~~~K~~~~~~~~~a~~~~p~~~~~~~l~~l~~~~~~s~~e~~~~ 658 (937)
T COG1025 579 SNGLDLTISGFTQRLPQLLRAFLDGLFSLPVDEDRFEQAKSQLSEELKNALTGKPYRQALDGLTGLLQVPYWSREERRNA 658 (937)
T ss_pred CCceEEEeeccccchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHhhhhhCCCCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred hccCCHHHHHHHHHHHHHhc
Q 004577 724 LHGLSLADLMAFIPELRSQV 743 (744)
Q Consensus 724 l~~it~~d~~~~~~~~~~~~ 743 (744)
|++++++++.+|...+++++
T Consensus 659 l~~v~~~e~~~f~~~l~~~~ 678 (937)
T COG1025 659 LESVSVEEFAAFRDTLLNGV 678 (937)
T ss_pred hhhccHHHHHHHHHHhhhcc
Confidence 99999999999999998764
No 3
>PRK15101 protease3; Provisional
Probab=100.00 E-value=9.2e-92 Score=846.29 Aligned_cols=665 Identities=28% Similarity=0.460 Sum_probs=602.3
Q ss_pred CCCccccCCCccccccEEEeCCCCEEEEEeCCCCCcCCccccccCCCccccccccCccccccccccccccccchhhhhcc
Q 004577 10 SDEIVIKSPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKG 89 (744)
Q Consensus 10 ~~~~~~~~~~d~~~~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (744)
....++||+.|.+.|+.++|+|||+|++++++.. +
T Consensus 30 ~~~~~~k~~~d~~~~~~~~L~NGL~v~l~~~~~~--------------~------------------------------- 64 (961)
T PRK15101 30 LQETIRKSEKDPRQYQAIRLDNGMTVLLVSDPQA--------------V------------------------------- 64 (961)
T ss_pred ccccCcCCCCCccceEEEEeCCCCEEEEEeCCCC--------------c-------------------------------
Confidence 3446899999999999999999999999999998 7
Q ss_pred cccccccceEEEEEEecCCCCCCCCCCCCchHHHHHhcccCccCCCChhHHHHHHHhcCCccceeeCCCeeEEEEEeChh
Q 004577 90 KGIFSQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKRE 169 (744)
Q Consensus 90 ~~~~~~~~~~~~~l~v~~Gs~~dp~~~~GlAhllehmlf~Gs~~~~~~~~~~~~l~~~g~~~na~t~~d~t~~~~~~~~~ 169 (744)
.++++++|++|+++||++.+|+|||+|||+|+||++||..++|.++++++||++||+|+.++|+|+++++++
T Consensus 65 --------~~~~~l~v~~Gs~~ep~~~~GlAHflEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA~T~~d~T~y~~~~~~~ 136 (961)
T PRK15101 65 --------KSLAALALPVGSLEDPDAQQGLAHYLEHMVLMGSKKYPQPDSLAEFLKKHGGSHNASTASYRTAFYLEVEND 136 (961)
T ss_pred --------ceeEEEEeCcCCCCCCCCCCchHHHHHHHHhcCCccCCCcchHHHHHHHhCCCccceECCCceEEEEEcCHH
Confidence 999999999999999999999999999999999999997679999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhCCCCCCCCCCCcCChhhhhhhhhcCccH
Q 004577 170 FLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINL 249 (744)
Q Consensus 170 ~l~~~l~~l~~~~~~P~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~ 249 (744)
+|+.+|++|+++|.+|.|+++++++||++|.+|++.+.++|.+++.+.+...+|++|||+++.+|+.++|.+. ....+
T Consensus 137 ~l~~aL~~~ad~~~~P~f~~~~~erE~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etl~~~--~~~~~ 214 (961)
T PRK15101 137 ALPPAVDRLADAIAEPLLDPKNADRERNAVNAELTMARSRDGMRMAQVSAETINPAHPGSRFSGGNLETLSDK--PGSKL 214 (961)
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhCCCCCCcccCCCCCHHHhhcC--CchHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999861 00138
Q ss_pred HHHHHHHHHhcccCCCcEEEEEeCCCHHHHHHHHHHHhccccCCCCCCCCCcccc-cccccceEEEEeecccccEEEEEE
Q 004577 250 QEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEG-TIWKACKLFRLEAVKDVHILDLTW 328 (744)
Q Consensus 250 ~~~l~~f~~~~y~~~~~~lvi~G~~~~~~l~~lv~~~f~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~l~~ 328 (744)
+++|++||++||+|+||+|+|+|++++++++++++++|+.||++..+.+....+. .+...+.++...+..++..+.+.|
T Consensus 215 ~~~L~~f~~~~Y~p~nm~lvv~G~~~~~~l~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~ 294 (961)
T PRK15101 215 QDALVDFYQRYYSANLMKAVIYSNQPLPELAKLAADTFGRVPNKNASVPEITVPVVTDAQKGIIIHYVPAQPRKVLRVEF 294 (961)
T ss_pred HHHHHHHHHHhCcccceEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCHHHcCeEEEEEECCCCcEEEEEE
Confidence 9999999999999999999999999999999999999999998654322221110 111134455556777888999999
Q ss_pred EcCCCchhhhcchHHHHHHHhcCCCCchHHHHHHhcCCcceeecccCCCcCCccccccEEEEEEEeCchhhhcHHHHHHH
Q 004577 329 TLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGF 408 (744)
Q Consensus 329 ~~~~~~~~~~~~~~~~l~~lLg~~~~~~L~~~Lr~~gl~y~~~~~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~ 408 (744)
++|.....+...+..+++.+||+++.|+|++.|+++||+|+++++..... . .+.|.|.|++.+++.|.++++++++.
T Consensus 295 ~~p~~~~~~~~~~~~~l~~ll~~~~~g~l~~~L~~~gla~~v~s~~~~~~-~--~~~g~f~i~~~~~~~~~~~~~~v~~~ 371 (961)
T PRK15101 295 RIDNNSAKFRSKTDEYISYLIGNRSPGTLSDWLQKQGLAEGISAGADPMV-D--RNSGVFAISVSLTDKGLAQRDQVVAA 371 (961)
T ss_pred ecCCcHHHHhhCHHHHHHHHhcCCCCCcHHHHHHHcCccceeeecccccc-C--CCceEEEEEEEcChHHHHhHHHHHHH
Confidence 99987666666788999999999999999999999999999998765321 1 13569999999999888899999999
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHhhcccccccCCCcHHHHHHHHHhcCCCCCccccccccccccCCHHHHHHHHhccCc
Q 004577 409 VYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMP 488 (744)
Q Consensus 409 i~~~l~~l~~~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~i~~vt~~~i~~~~~~l~~ 488 (744)
|+++|+.|++.|+++++++++|+....+|++.+...+.+.+..++..+..+++++++.+...++.+++++|+++++.|.|
T Consensus 372 i~~~i~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~l~~ 451 (961)
T PRK15101 372 IFSYLNLLREKGIDKSYFDELAHVLDLDFRYPSITRDMDYIEWLADTMLRVPVEHTLDAPYIADRYDPKAIKARLAEMTP 451 (961)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhccccCCCCCChHHHHHHHHHHhhhCCHHHheeCchhhhcCCHHHHHHHHhhcCH
Confidence 99999999999999999999999999999888777788899999999988999999999999999999999999999999
Q ss_pred cceEEEEEeCCCCCCCCccccceeeceeeeecCChHHHHhhcCCCCCCCCccCCCCCCCCCCCccccccCCCCCCCCCCC
Q 004577 489 ENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVTS 568 (744)
Q Consensus 489 ~n~~i~i~~~~~~~~~~~~~e~~~~~~y~~~~i~~~~l~~~~~~~~~~~~l~lP~~N~~ip~~~~l~~~~~~~~~~~~~~ 568 (744)
+|+++++++|++ ..+++++||+++|++.+|++++++.|....+ .+.++||++|+|||+||++....... ..
T Consensus 452 ~n~~i~~~~~~~---~~~~~~~~~~~~Y~~~~i~~~~~~~~~~~~~-~~~l~lP~~n~fip~~~~~~~~~~~~-----~~ 522 (961)
T PRK15101 452 QNARIWYISPQE---PHNKTAYFVDAPYQVDKISEQTFADWQQKAQ-NIALSLPELNPYIPDDFSLIKADKAY-----KH 522 (961)
T ss_pred hHEEEEEEeCCC---CCCccccccCCcceeecCCHHHHHHHhcCCC-CccCCCCCCCCccCCCCeeccCCCCC-----CC
Confidence 999999999964 5578899999999999999999999987554 67899999999999999998754333 27
Q ss_pred CeEEeecCCeeEEeecCCcc-CCceeeEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcceEEEEEEeCce
Q 004577 569 PTCIIDEPLIRFWYKLDNTF-KLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQASVAKLETSVSIFSDK 647 (744)
Q Consensus 569 P~~~~~~~~~~vw~~~d~~f-~~Pk~~i~~~~~~~~~~~~~~~~~~~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~~~g 647 (744)
|+++.+++|++|||++|+.| .+|++.+++.|.+|....++++.+++.|++.++++.+++..|.+.+||++++++ ..+|
T Consensus 523 p~~i~~~~g~~vw~~~d~~f~~~Pk~~i~~~~~~~~~~~~~~~~~l~~L~~~ll~~~l~e~~y~a~~aG~~~~~~-~~~g 601 (961)
T PRK15101 523 PELIVDEPGLRVVYMPSQYFADEPKADISLVLRNPKAMDSARNQVLFALNDYLAGLALDQLSNQASVGGISFSTN-ANNG 601 (961)
T ss_pred CeEEEcCCCeEEEEeCCCccccCCCEEEEEEEeCCCccCCHHHHHHHHHHHHHHHHHHHHHhchHHhcCcEEEEc-cCCC
Confidence 99999999999999999999 599999999999999999999999999999999999999999999999999999 7899
Q ss_pred eEEEEEecCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHccccC-hhHHHHHHHHHhhcCCCCCHHHHHHHhcc
Q 004577 648 LELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMK-PLSHSSYLRLQVLCQSFYDVDEKLSILHG 726 (744)
Q Consensus 648 i~l~~~G~~~kl~~ll~~i~~~l~~~~~~~~~f~~~k~~~~~~~~n~~~~-p~~~a~~~~~~ll~~~~~~~~~~~~~l~~ 726 (744)
+.++++||+++++.+++.+++.+.++.+++++|+++|+.+++.+++...+ |+.++...+..+..+++|+..+..++|++
T Consensus 602 ~~i~v~g~s~~l~~ll~~l~d~l~~~~~~~~~fe~~k~~~~~~l~~~~~~~~~~~~~~~~~~~~~~py~~~~~~~~~l~~ 681 (961)
T PRK15101 602 LMVNANGYTQRLPQLLQALLEGYFSFTPTEEQLAQAKSWYREQLDSAEKGKAYEQAIMPAQMLSQVPYFERDERRKLLPS 681 (961)
T ss_pred EEEEEEecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcccCcHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999998876 99999987766677788888899999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 004577 727 LSLADLMAFIPELRSQ 742 (744)
Q Consensus 727 it~~d~~~~~~~~~~~ 742 (744)
||++|+++|++++++.
T Consensus 682 it~edl~~f~~~~~~~ 697 (961)
T PRK15101 682 ITLKDVLAYRDALLSG 697 (961)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999865
No 4
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=100.00 E-value=9.2e-51 Score=453.02 Aligned_cols=512 Identities=20% Similarity=0.228 Sum_probs=371.8
Q ss_pred cEEEeCCCCEEEEEeCCCCCcCCccccccCCCccccccccCccccccccccccccccchhhhhcccccccccceEEEEEE
Q 004577 25 RVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQTKKAAAAMC 104 (744)
Q Consensus 25 ~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 104 (744)
+.++|+|||+|++++++.. + .+++.++
T Consensus 1 r~~tL~NGLrVllv~~p~~--------------p---------------------------------------~vav~l~ 27 (696)
T TIGR02110 1 RRITLPNGLRVHLYHQPDA--------------K---------------------------------------RAAALLR 27 (696)
T ss_pred CeEEcCCCCEEEEEECCCC--------------C---------------------------------------EEEEEEE
Confidence 4679999999999999998 7 9999999
Q ss_pred ecCCCCCCCCCCCCchHHHHHhcccCccCCCChhHHHHHHHhcCCccceeeCCCeeEEEEEeChhhHHHHHHHHHHhhhC
Q 004577 105 VGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFIS 184 (744)
Q Consensus 105 v~~Gs~~dp~~~~GlAhllehmlf~Gs~~~~~~~~~~~~l~~~g~~~na~t~~d~t~~~~~~~~~~l~~~l~~l~~~~~~ 184 (744)
|++||.+||++.+|+|||+|||+|+||++++..++|.++++.+||++||+|+.|+|+|++++++++++.+|+++++++.+
T Consensus 28 v~aGS~~Ep~~~~GLAHfLEHMLFkGT~~~~~~~~i~~~le~lGG~lNA~Ts~d~T~y~~~v~~~~l~~aL~lLaD~l~~ 107 (696)
T TIGR02110 28 VAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRLMPWVQRQGGQVNATTLERTTAFFFELPAAALAAGLARLCDMLAR 107 (696)
T ss_pred EeeccCCCCCCCCcHHHHHHHHHhcCCCCCCcHHHHHHHHHHhCCeEEEEEcCCeEEEEEEecHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999998557999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhCCCCCCCCCCCcCChhhhhhhhhcCccHHHHHHHHHHhcccCC
Q 004577 185 PLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGG 264 (744)
Q Consensus 185 P~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~f~~~~y~~~ 264 (744)
|.|++++|++||+++.+|++...++|..+..+.+...+|++|||+++.+|+.++|.... .++.++|++||++||+|+
T Consensus 108 P~f~eeeierEr~vvl~Ei~~~~ddp~~~~~~~l~~~l~~~HPy~~~~iGt~esL~~it---~~t~edL~~F~~~~Y~p~ 184 (696)
T TIGR02110 108 PLLTAEDQQREREVLEAEYIAWQNDADTLREAALLDALQAGHPLRRFHAGSRDSLALPN---TAFQQALRDFHRRHYQAG 184 (696)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHhCcc---cchHHHHHHHHHHhcchh
Confidence 99999999999999999999999999999999999999999999999999999998610 045999999999999999
Q ss_pred CcEEEEEeCCCHHHHHHHHHHHhccccCCCCCCCCCcccccccccceEEEEeecccccEEEEEEEcCCCchhhhcchHHH
Q 004577 265 LMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDY 344 (744)
Q Consensus 265 ~~~lvi~G~~~~~~l~~lv~~~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~ 344 (744)
||+|+|+||+++++++++++++|+.|+++..+.+.. +.+....++..... ....++.+.|.+|..... +..++.+
T Consensus 185 NmvLvIvGdvs~eel~~l~e~~f~~~~~~~~~~~~~--~~p~~~~~~~~~~~--~~~~q~~l~~~~p~~~~~-d~~al~l 259 (696)
T TIGR02110 185 NMQLWLQGPQSLDELEQLAARFGASLAAGGECAQAP--PAPLLRFDRLTLAG--GSEPRLWLLFALAGLPAT-ARDNVTL 259 (696)
T ss_pred cEEEEEEeCCCHHHHHHHHHHHhCCCCCCCCCCCCC--CCCCCCCceeEEEe--cCcceEEEEEeecCCCCC-ChHHHHH
Confidence 999999999999999999999999998765432221 11222223222222 233567777777764322 2236899
Q ss_pred HHHHhcCCCCchHHHHHHhcCCcceeecccCCCcCCccccccEEEEEEEeCchhhhcHHHHHHHHHHHHHHHHhc--CCc
Q 004577 345 LAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQV--SPQ 422 (744)
Q Consensus 345 l~~lLg~~~~~~L~~~Lr~~gl~y~~~~~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~l~~~--~~~ 422 (744)
++++||++++|+|+..||++||+|+++++......+ .+.|.|++.+++.+.++.+++++.|+++|++++++ +++
T Consensus 260 L~~iLg~g~sSrL~~~LRe~GLaysV~s~~~~~~~g----~~lf~I~~~lt~~~~~~~~~v~~~i~~~L~~L~~~~~~~~ 335 (696)
T TIGR02110 260 LCEFLQDEAPGGLLAQLRERGLAESVAATWLYQDAG----QALLALEFSARCISAAAAQQIEQLLTQWLGALAEQTWAEQ 335 (696)
T ss_pred HHHHhCCCcchHHHHHHHHCCCEEEEEEeccccCCC----CcEEEEEEEEcCCCccCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999865332212 34999999997655578999999999999999998 788
Q ss_pred hhHHHHHHHHhhcccccccCCCcHHHHHHHHHhcCCCCCccccccccccccCCHHHHHHHHhccCccceEEEEEeCCCCC
Q 004577 423 KWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAK 502 (744)
Q Consensus 423 ~~~l~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~i~~vt~~~i~~~~~~l~~~n~~i~i~~~~~~~ 502 (744)
.+|+.++|+. .|.+... .+.+.+..-+ ..+++.. . ..-...++...++.+. ++
T Consensus 336 ~eel~rlk~~---~~~~~~~-~~l~~~r~~~---~~~~~~~--~-----~~~~~~~~~~~l~~~~-~~------------ 388 (696)
T TIGR02110 336 LEHYAQLAQR---RFQTLAL-SPLAQLRGRA---LGFALGC--A-----LPDALTDFLAALQDCP-RT------------ 388 (696)
T ss_pred HHHHHHHHHh---hhhhccc-ChHHHHhhhc---cCCCCcc--c-----CcchHHHHHHHHhhcc-cc------------
Confidence 9999998875 3432222 3443333111 1122110 0 0001222233332211 00
Q ss_pred CCCccccceeeceeeeecCChHHHHhhcCCCCCCCCccCCCCCCCCCCCcccc-----ccCCCCCCC--CC-----CCCe
Q 004577 503 SQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIR-----ANDISNDLV--TV-----TSPT 570 (744)
Q Consensus 503 ~~~~~~e~~~~~~y~~~~i~~~~l~~~~~~~~~~~~l~lP~~N~~ip~~~~l~-----~~~~~~~~~--~~-----~~P~ 570 (744)
....++|+.|||+-.-+... ....+.... .. -.|.
T Consensus 389 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (696)
T TIGR02110 389 ---------------------------------RLLTQQQPGAPFAHSGLHAPVARLARAVVQARSVSLTLAASRCSAPK 435 (696)
T ss_pred ---------------------------------cccccCCCCcchhhhhccccccccccccccccccccccccccccccc
Confidence 01123445555441100000 000000000 00 0000
Q ss_pred EEeecCCeeEEeecCCccCCceeeEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcceEEEEEEeCceeEE
Q 004577 571 CIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQASVAKLETSVSIFSDKLEL 650 (744)
Q Consensus 571 ~~~~~~~~~vw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~~~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gi~l 650 (744)
.. +.-.-.|.-+++ + ..+.++++...|...... +...+...|..+.-++..||.+.+++..+....|
T Consensus 436 ~~--~~~~~~~~~~~~-~--~~~~l~l~w~~~~~~~~~--------~~~~l~~~l~~l~~~~~~~g~~~~~~~~~~~w~l 502 (696)
T TIGR02110 436 SP--TRCAFLAALPSD-K--TERALALRWGFPSHPPEE--------LALALQRQLRPLLADARHAGVNGSWQATGASWQL 502 (696)
T ss_pred cc--ccchhhhccCCC-C--cccceeeeccCCCCcchH--------HHHHHHHHHHHHHHHHHhcCceeEEEEcCCeEEE
Confidence 00 000011222322 1 245666666665532211 4444567777777778889999999999989999
Q ss_pred EEEecCCCHHHHHHHHHHHHccCC
Q 004577 651 KVYGFNDKLPVLLSKILAIAKSFL 674 (744)
Q Consensus 651 ~~~G~~~kl~~ll~~i~~~l~~~~ 674 (744)
++.|.-+-++..+...+..|..+.
T Consensus 503 ~l~g~~~~~~~~~~~~~~~l~~~~ 526 (696)
T TIGR02110 503 LLNGPRSPMRAVFSVALALLALAA 526 (696)
T ss_pred EcCCCchhHHHHHHHHHHHHhCCC
Confidence 999999999999999999998873
No 5
>PTZ00432 falcilysin; Provisional
Probab=100.00 E-value=3.8e-49 Score=468.73 Aligned_cols=576 Identities=14% Similarity=0.088 Sum_probs=410.4
Q ss_pred eEEEEEEecCCCCCCCCCCCCchHHHHHhcccCccCCCChhHHHHHHHhcC--CccceeeCCCeeEEEEEeCh-hhHHHH
Q 004577 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHG--GSSNAYTETEHTCYHFEIKR-EFLKGA 174 (744)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~GlAhllehmlf~Gs~~~~~~~~~~~~l~~~g--~~~na~t~~d~t~~~~~~~~-~~l~~~ 174 (744)
.+.++++|+.|+ .+..|+||++|||+|+||++||.. ++...+.+.| +.+||+|+.|+|+|++.+.+ ++|..+
T Consensus 115 ~~~f~i~f~T~~----~d~~G~aH~LEH~~f~GS~k~p~~-~~~~~l~~~gl~~~lNA~T~~D~T~Y~~~~~~e~d~~~~ 189 (1119)
T PTZ00432 115 EMCFDFYVPTPP----HNDKGIPHILEHSVLSGSKKYNYK-DSFSLLVQGGFNSFLNAYTFKDRTSYLFASTNEKDFYNT 189 (1119)
T ss_pred eeEEEEEecCCC----CCCcchhHHHHHHHhCCCCCCCcc-cHHHHHHhcCcCCCccccCCCCceEEEeccCCHHHHHHH
Confidence 678999999996 456899999999999999999995 6666776644 88999999999999999876 579999
Q ss_pred HHHHHHhhhCCCCChHHH--H---------HH--------------------HHHHHHHHHhhcCChHHHHHHHHHhhCC
Q 004577 175 LMRFSQFFISPLMKVEAM--E---------RE--------------------VLAVDSEFNQALQNDACRLQQLQCHTSQ 223 (744)
Q Consensus 175 l~~l~~~~~~P~f~~~~~--~---------~e--------------------~~~v~~e~~~~~~~~~~~~~~~~~~~~~ 223 (744)
|+++++++.+|.|+++.+ . ++ +++|.+|+++..++|.+++++.+.+.+|
T Consensus 190 ldv~~d~v~~P~~~~~~~~f~qEgwh~E~~~~~~~~~~~~e~~~~~~~~l~~kgVV~~Emk~~~~~p~~~~~~~~~~~lf 269 (1119)
T PTZ00432 190 ADVYMDSVFQPNILEDKDIFKQEGWHYKVTKLKDDEKNADELGNVHDRHVSYSGIVYSEMKKRFSDPLSFGYSVIYQNLF 269 (1119)
T ss_pred HHHHHHHHhCcCcccccchhhhhhhhccccccccccccccccccccccccchhhHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 999999999999998863 2 21 7889999999999999999999999899
Q ss_pred CCCCCCCCCcCChhhhhhhhhcCccHHHHHHHHHHhcccCCCcEEEEEeCCCHHHHHHHHHHHhccccCCCCCC----C-
Q 004577 224 LGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIK----P- 298 (744)
Q Consensus 224 ~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~f~~~~y~~~~~~lvi~G~~~~~~l~~lv~~~f~~i~~~~~~~----~- 298 (744)
+|||+++++|++++|.+ +|+++|++||++||+|+||+|+|+|+++++++.++++++|+.+|+..... +
T Consensus 270 -~~pY~~~~~G~~~~I~~------lt~e~l~~Fh~~~Y~P~N~~l~v~Gdid~~~~l~~l~~~f~~~~~~~~~~~~~~~~ 342 (1119)
T PTZ00432 270 -SNVYKYDSGGDPKDIVE------LTYEELVEFYKTYYGPKTATVYFYGPNDVTERLEFVDNYLTKHPKTGQLSHTAYRE 342 (1119)
T ss_pred -CCCCCCCCCCChHhhcc------CCHHHHHHHHHHhcCccceEEEEEcCCCHHHHHHHHHHHHhhcccccccccccccc
Confidence 99999999999999999 99999999999999999999999999999999999999999887653210 0
Q ss_pred --CCccc-ccccccceEEEE---eecccccEEEEE-EEcCCC-----------chhhhcchHHHHHHHhcCCCCchHHHH
Q 004577 299 --QFTVE-GTIWKACKLFRL---EAVKDVHILDLT-WTLPCL-----------HQEYLKKSEDYLAHLLGHEGRGSLHSF 360 (744)
Q Consensus 299 --~~~~~-~~~~~~~~~~~~---~~~~~~~~l~l~-~~~~~~-----------~~~~~~~~~~~l~~lLg~~~~~~L~~~ 360 (744)
....+ .+.+...+.+.. .....+..+.++ |++++. .+..+..++.+|+++||+++.++|++.
T Consensus 343 ~~~~~~~~~~~~~~~~~v~~~~~~~~~e~~~l~~~~w~~~p~~~~~~~~~~~~~d~~~~~AL~VLs~lLggg~sS~L~q~ 422 (1119)
T PTZ00432 343 DADENLLYEEYKDKPKHVKKKFSSHSEEEENLMSVSWLLNPKHNGSKDYDKSLIDPVDYLALLVLNYLLLGTPESVLYKA 422 (1119)
T ss_pred cccccccccccccCCeEEEeccCCCccccccEEEEEEEcCCccccccccccccCCHHHHHHHHHHHHHHcCCCccHHHHH
Confidence 00000 011222222221 112234556665 988432 233567899999999999999999999
Q ss_pred HHhcCCcceee-cccCCCcCCccccccEEEEEEEeCc-hh----hhcHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhh
Q 004577 361 LKGRGWATSIS-AGVGDEGMHRSSIAYIFVMSIHLTD-SG----LEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGN 434 (744)
Q Consensus 361 Lr~~gl~y~~~-~~~~~~~~~~~~~~g~f~i~~~~~~-~g----~~~~~~v~~~i~~~l~~l~~~~~~~~~l~~~k~~~~ 434 (744)
||++||+|++. ++... .. ..|.|.|.+...+ .. -++++++.+.|+++|++++++|+++++++++++.+.
T Consensus 423 LrE~GLa~svv~~~~~~-~~----~~~~f~I~l~g~~~~~~~~~~~~~~ev~~~I~~~L~~l~~eGi~~eele~a~~qle 497 (1119)
T PTZ00432 423 LIDSGLGKKVVGSGLDD-YF----KQSIFSIGLKGIKETNEKRKDKVHYTFEKVVLNALTKVVTEGFNKSAVEASLNNIE 497 (1119)
T ss_pred HHhcCCCcCCCcCcccC-CC----CceEEEEEEEcCChHhccchhhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999964 33332 22 3458988886333 11 135889999999999999999999999999988876
Q ss_pred cccccccC---CCcHHHHHHHHHhcCC-CCCccccccccccc------cCCHHHHHHHHhc-cCccce-EEEEEeCCC--
Q 004577 435 MEFRFAEE---QPQDDYAAELAGNLLI-YPAEHVIYGEYMYE------VWDEEMIKHLLGF-FMPENM-RIDVVSKSF-- 500 (744)
Q Consensus 435 ~~~~~~~~---~~~~~~~~~l~~~~~~-~~~~~~l~~~~~i~------~vt~~~i~~~~~~-l~~~n~-~i~i~~~~~-- 500 (744)
..++-... .....++..++..+++ .+|.+.+.....++ +.++..+++++++ |..++. .++++.|+.
T Consensus 498 f~~rE~~~~~~p~gl~~~~~~~~~~~~g~dp~~~l~~~~~l~~lr~~~~~~~~y~e~Li~k~ll~N~h~~~v~~~p~~s~ 577 (1119)
T PTZ00432 498 FVMKELNLGTYPKGLMLIFLMQSRLQYGKDPFEILRFEKLLNELKLRIDNESKYLEKLIEKHLLNNNHRVTVHLEAVESS 577 (1119)
T ss_pred HHhhhccCCCCCcHHHHHHHHHHHHhcCCCHHHHHhhHHHHHHHHHHHhcccHHHHHHHHHHccCCCeeeEEEEecCCcc
Confidence 66542211 1135677777777654 56666655443333 2344689999998 544444 344455543
Q ss_pred C-CCCCccccceeeceeeeecCCh----------HHHHhhcCCCCCCCC-c-cCCCCCCCCCCCccccccCCCCCCCCCC
Q 004577 501 A-KSQDFHYEPWFGSRYTEEDISP----------SLMELWRNPPEIDVS-L-QLPSQNEFIPTDFSIRANDISNDLVTVT 567 (744)
Q Consensus 501 ~-~~~~~~~e~~~~~~y~~~~i~~----------~~l~~~~~~~~~~~~-l-~lP~~N~~ip~~~~l~~~~~~~~~~~~~ 567 (744)
. ..+..+.++ -..+-....+++ +.+++|++..+ +++ + .||.+ ++.++..... .
T Consensus 578 ~~~~~~~~~e~-~~L~~~~~~Ls~ee~~~i~~~~~~l~~~q~~~~-~~e~l~~lP~l--------~~~DI~~~~~----~ 643 (1119)
T PTZ00432 578 KYEKEFNKLVK-DELKERLSHLTKEQVDEMEKAYEKFKKEREADD-DPEHLDSFPIL--------SLSDLNKETE----E 643 (1119)
T ss_pred cHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHhhcCCC--------cHHHcCCccc----C
Confidence 1 000011110 011111223333 34455655433 211 1 12222 2211111100 0
Q ss_pred CCeE---------------EeecCCeeEEeecCCccCCceeeEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHH-Hhh-
Q 004577 568 SPTC---------------IIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNE-IIY- 630 (744)
Q Consensus 568 ~P~~---------------~~~~~~~~vw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~~~~l~~~ll~~~l~e-~~y- 630 (744)
+|.. ....+++.+++++- +. ++.+|+++.++....+.+...++.||+.+|....++ +.|
T Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~T--nGi~y~~~~fdl~~l~~e~~~yl~L~~~~l~~~gT~~~s~~ 719 (1119)
T PTZ00432 644 IPTKLYKLSSDSLKENMDLDSDGGSVTVLVHPI--ES--RGILYLDFAFSLDSLTVDELKYLNLFKALLKENGTDKLSSE 719 (1119)
T ss_pred CcchhhhcccccccccccccccCCCcceEEEec--CC--CCeEEEEEEecCCCCCHHHHhhHHHHHHHHHhcCCCCCCHH
Confidence 1211 12345677777652 22 679999999988888899999999999999886532 333
Q ss_pred ------hhhhcceEEEEEEeC--------------ceeEEEEEecCCCHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHH
Q 004577 631 ------QASVAKLETSVSIFS--------------DKLELKVYGFNDKLPVLLSKILAIAKSFLPS-DDRFKVIKEDVVR 689 (744)
Q Consensus 631 ------~a~~agl~~~~~~~~--------------~gi~l~~~G~~~kl~~ll~~i~~~l~~~~~~-~~~f~~~k~~~~~ 689 (744)
...+.|+++++.... ..+.|++++..+|++.+++.+.+.|.+..|+ .+|+..+..+++.
T Consensus 720 el~~~i~~~tGg~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~l~~~~~~~~~l~~eil~~~~f~d~~rl~~il~~~~~ 799 (1119)
T PTZ00432 720 EFTYKREKNLGGLSASTAFYSETNNLTYDDPYNGVGYLNVRAKVLKHKVNEMVDIVLEALKDADFSNSKKGVEILKRKIN 799 (1119)
T ss_pred HHHHHHHHhCCCeEEEEEEeccccccccCcccccceEEEEEEEEhhhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Confidence 234678887765532 3689999999999999999999999999997 5669999999999
Q ss_pred HHHccccC-hhHHHHHHHHH
Q 004577 690 TLKNTNMK-PLSHSSYLRLQ 708 (744)
Q Consensus 690 ~~~n~~~~-p~~~a~~~~~~ 708 (744)
.+.+...+ ++..|......
T Consensus 800 ~~~~~~~~~Gh~~A~~~~~s 819 (1119)
T PTZ00432 800 GMKTVFSSKGHKFALKRMKS 819 (1119)
T ss_pred HHHHhhhhhHHHHHHHHHHh
Confidence 99999886 88888866543
No 6
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=100.00 E-value=2e-49 Score=436.59 Aligned_cols=407 Identities=21% Similarity=0.200 Sum_probs=342.6
Q ss_pred cccEEEeCCCCEEEEEeCCCCCcCCccccccCCCccccccccCccccccccccccccccchhhhhcccccccccceEEEE
Q 004577 23 LYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQTKKAAAA 102 (744)
Q Consensus 23 ~~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (744)
.++..+|+||+++++.+++.. + .+++.
T Consensus 16 ~~~~~~L~nGl~~~~~~~~~~--------------~---------------------------------------~vs~~ 42 (438)
T COG0612 16 GLQVFTLPNGLRVITYPNPTA--------------P---------------------------------------TVSLD 42 (438)
T ss_pred cceEEEcCCCCEEEEEeCCCC--------------C---------------------------------------EEEEE
Confidence 389999999999999999988 7 99999
Q ss_pred EEecCCCCCCCCCCCCchHHHHHhcccCccCCCChhHHHHHHHhcCCccceeeCCCeeEEEEEeChhhHHHHHHHHHHhh
Q 004577 103 MCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFF 182 (744)
Q Consensus 103 l~v~~Gs~~dp~~~~GlAhllehmlf~Gs~~~~~~~~~~~~l~~~g~~~na~t~~d~t~~~~~~~~~~l~~~l~~l~~~~ 182 (744)
++|++|+..++.+..|+|||+|||+|.|+++++. .++.+.++..||..||+|+.|+|+|++++.+++++.+|+++++++
T Consensus 43 ~~v~~Gs~~e~~~~~G~AH~lehm~fkgt~~~~~-~~i~~~~~~~G~~~na~ts~d~t~y~~~~l~~~~~~~l~llad~l 121 (438)
T COG0612 43 VWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLPS-AELAEAFEKLGGQLNAFTSFDYTVYYLSVLPDNLDKALDLLADIL 121 (438)
T ss_pred EEEeecccCCCCCcccHHHHHHHHHccCCCCCCh-HHHHHHHHHhcCeeeccccchhhhhhhhhchhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999987 489999999999999999999999999988999999999999999
Q ss_pred hCCCCChHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhCCCCCCCCCCCcCChhhhhhhhhcCccHHHHHHHHHHhccc
Q 004577 183 ISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQ 262 (744)
Q Consensus 183 ~~P~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~f~~~~y~ 262 (744)
.+|.|+++.|++||+++.+|++...++|.++....+...+|++|||+++..|+.++|.. +++++|++||++||+
T Consensus 122 ~~p~f~~~~~e~Ek~vil~ei~~~~d~p~~~~~~~l~~~~~~~~p~~~~~~G~~e~I~~------it~~dl~~f~~k~Y~ 195 (438)
T COG0612 122 LNPTFDEEEVEREKGVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGTEESIEA------ITREDLKDFYQKWYQ 195 (438)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhccCCCCCCCCCCHHHHHh------CCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CCCcEEEEEeCCCHHHHHHHHHHHhccccCCCCCCCCCcccccccccceEEEEe----ecccccEEEEEEEcCCCchhhh
Q 004577 263 GGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLE----AVKDVHILDLTWTLPCLHQEYL 338 (744)
Q Consensus 263 ~~~~~lvi~G~~~~~~l~~lv~~~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~l~~~~~~~~~~~~ 338 (744)
|+||+|+|+||++.+++..+++++|+.|+...++.+.. +.++....+.+.+. +...+..+.++++.+......+
T Consensus 196 p~n~~l~vvGdi~~~~v~~~~~~~f~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 273 (438)
T COG0612 196 PDNMVLVVVGDVDAEEVVELIEKYFGDLPGAAPPPKIP--PEPPLGPERVVRVNDPEQPDLEQAWLALGYPGPDYDSPDD 273 (438)
T ss_pred cCceEEEEecCCCHHHHHHHHHHHHccCCccCCCCCCC--CccccCCCceEEecCCCCchhhhhhhhccccCcCcCcchh
Confidence 99999999999999999999999999999722222221 22333344444432 2334556667777666544345
Q ss_pred cchHHHHHHHhcCCCCchHHHHHH-hcCCcceeecccCCCcCCccccccEEEEEEEeCchhhhcHHHHHHHHHHHHHHHH
Q 004577 339 KKSEDYLAHLLGHEGRGSLHSFLK-GRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLR 417 (744)
Q Consensus 339 ~~~~~~l~~lLg~~~~~~L~~~Lr-~~gl~y~~~~~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~l~ 417 (744)
..++.+++.+||++..++|+..+| ++||+|++++..... .+.|.|.+.+.+.+ .+.+++.+.|.+.++.++
T Consensus 274 ~~~~~l~~~llgg~~~SrLf~~~re~~glay~~~~~~~~~-----~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~ 345 (438)
T COG0612 274 YAALLLLNGLLGGGFSSRLFQELREKRGLAYSVSSFSDFL-----SDSGLFSIYAGTAP---ENPEKTAELVEEILKALK 345 (438)
T ss_pred hHHHHHHHHHhCCCcchHHHHHHHHhcCceeeeccccccc-----cccCCceEEEEecC---CChhhHHHHHHHHHHHHH
Confidence 678899999999989999999999 899999999754432 23458888888887 567777777777777776
Q ss_pred hcC---CchhHHHHHHHHhhcccccccCCCcHHHHHHHHHhcCC-CCCccccccccccccCCHHHHHHHHhc-cCccceE
Q 004577 418 QVS---PQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLI-YPAEHVIYGEYMYEVWDEEMIKHLLGF-FMPENMR 492 (744)
Q Consensus 418 ~~~---~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~l~~~~~i~~vt~~~i~~~~~~-l~~~n~~ 492 (744)
+.+ +++++++.+|......+.... +++...+..+...... .+..........++++|+++|++++++ +.+++..
T Consensus 346 ~~~~~~~t~~~~~~~k~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~~~~~~~~ 424 (438)
T COG0612 346 KGLKGPFTEEELDAAKQLLIGLLLLSL-DSPSSIAELLGQYLLLGGSLITLEELLERIEAVTLEDVNAVAKKLLAPENLT 424 (438)
T ss_pred HHhccCCCHHHHHHHHHHHHHHhhhcc-CCHHHHHHHHHHHHHhcCCccCHHHHHHHHHhcCHHHHHHHHHHhcCCCCcE
Confidence 664 899999999998887776544 4566666666655443 333444445677999999999999998 7788899
Q ss_pred EEEEeCCC
Q 004577 493 IDVVSKSF 500 (744)
Q Consensus 493 i~i~~~~~ 500 (744)
+++++|..
T Consensus 425 ~~~~~p~~ 432 (438)
T COG0612 425 IVVLGPEK 432 (438)
T ss_pred EEEEcccc
Confidence 99999853
No 7
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-47 Score=377.38 Aligned_cols=408 Identities=15% Similarity=0.122 Sum_probs=346.3
Q ss_pred cccccEEEeCCCCEEEEEeCCCCCcCCccccccCCCccccccccCccccccccccccccccchhhhhcccccccccceEE
Q 004577 21 KRLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQTKKAA 100 (744)
Q Consensus 21 ~~~~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (744)
.+..++.+|+||++|..-++ +. . ++.
T Consensus 31 ~P~t~vttL~NGlrVaTE~~-~a--------------~---------------------------------------TAT 56 (467)
T KOG0960|consen 31 VPETEVTTLPNGLRVATEHN-SA--------------S---------------------------------------TAT 56 (467)
T ss_pred CCcceEEEcCCCcEEEeccC-CC--------------c---------------------------------------ceE
Confidence 45678999999999999888 55 5 999
Q ss_pred EEEEecCCCCCCCCCCCCchHHHHHhcccCccCCCChhHHHHHHHhcCCccceeeCCCeeEEEEEeChhhHHHHHHHHHH
Q 004577 101 AAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQ 180 (744)
Q Consensus 101 ~~l~v~~Gs~~dp~~~~GlAhllehmlf~Gs~~~~~~~~~~~~l~~~g~~~na~t~~d~t~~~~~~~~~~l~~~l~~l~~ 180 (744)
+.+++.+||+.|.+..+|.|||+|||+|.||++.+. ..+...++..|+.+||||++|+|+||..+.+++++.++++++|
T Consensus 57 VGVwidaGSR~EnekNNG~ahFLEhlaFKGT~~Rs~-~alElEieniGahLNAytSReqT~yyakal~~dv~kavdiLaD 135 (467)
T KOG0960|consen 57 VGVWIDAGSRFENEKNNGTAHFLEHLAFKGTKNRSQ-AALELEIENIGAHLNAYTSREQTVYYAKALSKDVPKAVDILAD 135 (467)
T ss_pred EEEEeccCccccccccccHHHHHHHHHhcCCCcchh-HHHHHHHHHHHHHhcccccccceeeehhhccccchHHHHHHHH
Confidence 999999999999999999999999999999999998 6899999999999999999999999999999999999999999
Q ss_pred hhhCCCCChHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhCCCCCCCCCCCcCChhhhhhhhhcCccHHHHHHHHHHhc
Q 004577 181 FFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNY 260 (744)
Q Consensus 181 ~~~~P~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~f~~~~ 260 (744)
++.+..+.+..|++||.+|..|++....+-..++++.++..+|+++|+++...|..+.|++ ++++||++|.+.|
T Consensus 136 Ilqns~L~~s~IerER~vILrEmqevd~~~~eVVfdhLHatafQgtPL~~tilGp~enI~s------i~r~DL~~yi~th 209 (467)
T KOG0960|consen 136 ILQNSKLEESAIERERDVILREMQEVDKNHQEVVFDHLHATAFQGTPLGRTILGPSENIKS------ISRADLKDYINTH 209 (467)
T ss_pred HHHhCccchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCCcccccccChhhhhhh------hhHHHHHHHHHhc
Confidence 9999999999999999999999999888888899999999999999999999999999998 9999999999999
Q ss_pred ccCCCcEEEEEeCCCHHHHHHHHHHHhccccCCCCCCCCCcccccccccceEEEEeecccccEEEEEEEcCCCchhhhcc
Q 004577 261 YQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPCLHQEYLKK 340 (744)
Q Consensus 261 y~~~~~~lvi~G~~~~~~l~~lv~~~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~ 340 (744)
|.+++|+|+.+|.++++++.+++++|||.++....+......+.+.|.+..+....+..+..++.|++..++...+ ++.
T Consensus 210 Y~~~RmVlaaaGgV~He~lv~la~k~fg~~~~~~~~~~~~~~~~~~FtgsEvR~rdd~lP~a~~AiAVEG~~w~~p-D~~ 288 (467)
T KOG0960|consen 210 YKASRMVLAAAGGVKHEELVKLAEKYFGDLSKLQTGDKVPLVPPARFTGSEVRVRDDDLPLAHIAIAVEGVSWAHP-DYF 288 (467)
T ss_pred ccCccEEEEecCCcCHHHHHHHHHHHcCCCcccccCcCCCCCCCccccCceeeecCCCCchhheeeeEecCCcCCc-cHH
Confidence 9999999999999999999999999999987533222111112244555555555566678888888888775543 678
Q ss_pred hHHHHHHHhcCCC---------CchHHHHHHhcCCcceeecccCCCcCCccccccEEEEEEEeCchhhhcHHHHHHHHHH
Q 004577 341 SEDYLAHLLGHEG---------RGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQ 411 (744)
Q Consensus 341 ~~~~l~~lLg~~~---------~~~L~~~Lr~~gl~y~~~~~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~ 411 (744)
++.+.+.|+|+.. +++|.+.+....++.++.++.- . | .+.|+|++++.+.+. ..++.++..+.+
T Consensus 289 ~l~van~iiG~wdr~~g~g~~~~s~La~~~~~~~l~~sfqsFnt-~---Y-kDTGLwG~y~V~~~~--~~iddl~~~vl~ 361 (467)
T KOG0960|consen 289 ALMVANTIIGNWDRTEGGGRNLSSRLAQKIQQDQLCHSFQSFNT-S---Y-KDTGLWGIYFVTDNL--TMIDDLIHSVLK 361 (467)
T ss_pred HHHHHHHHhhhhhcccCCccCCccHHHHHHHHHHHHHHHhhhhc-c---c-ccccceeEEEEecCh--hhHHHHHHHHHH
Confidence 9999999998632 3557677776678877765432 2 3 377899999999532 789999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHhhcccccccCCCcHHHHHHHHHhcCCCCCccccc-cccccccCCHHHHHHHHhc-cCcc
Q 004577 412 YIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIY-GEYMYEVWDEEMIKHLLGF-FMPE 489 (744)
Q Consensus 412 ~l~~l~~~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~-~~~~i~~vt~~~i~~~~~~-l~~~ 489 (744)
++.+|.. .+++.|+++||++++.++....+ .....+..|+..++.|+..-.+. ....|+++|.++|++++.+ +...
T Consensus 362 eW~rL~~-~vteaEV~RAKn~Lkt~Lll~ld-gttpi~ediGrqlL~~Grri~l~El~~rId~vt~~~Vr~va~k~iyd~ 439 (467)
T KOG0960|consen 362 EWMRLAT-SVTEAEVERAKNQLKTNLLLSLD-GTTPIAEDIGRQLLTYGRRIPLAELEARIDAVTAKDVREVASKYIYDK 439 (467)
T ss_pred HHHHHHh-hccHHHHHHHHHHHHHHHHHHhc-CCCchHHHHHHHHhhcCCcCChHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence 9999966 79999999999999998765443 33347999999988887544333 3567999999999999988 7778
Q ss_pred ceEEEEEeCC
Q 004577 490 NMRIDVVSKS 499 (744)
Q Consensus 490 n~~i~i~~~~ 499 (744)
...++.+||-
T Consensus 440 ~iAia~vG~i 449 (467)
T KOG0960|consen 440 DIAIAAVGPI 449 (467)
T ss_pred Ccceeeeccc
Confidence 8888888883
No 8
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=100.00 E-value=6.2e-42 Score=378.01 Aligned_cols=581 Identities=16% Similarity=0.133 Sum_probs=424.4
Q ss_pred eEEEEEEecCCCCCCCCCCCCchHHHHHhcccCccCCCChhHHHHHHHh-cCCccceeeCCCeeEEEEEe-ChhhHHHHH
Q 004577 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSK-HGGSSNAYTETEHTCYHFEI-KREFLKGAL 175 (744)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~GlAhllehmlf~Gs~~~~~~~~~~~~l~~-~g~~~na~t~~d~t~~~~~~-~~~~l~~~l 175 (744)
...++++|+ ..|.+..|+||.|||++||||++||-.+.|..++.+ .+..+||+|+.|+|+|.++. ..++|-++|
T Consensus 42 ~~vFsi~F~----T~p~dstGVaHiLEHtvlcGS~kYPvkdPF~~ml~rSLntF~NA~T~~D~T~YP~sS~~~~Df~NLl 117 (978)
T COG1026 42 NNVFSIAFK----TEPHDSTGVAHILEHTVLCGSKKYPVKDPFFKMLKRSLNTFLNAFTFPDKTVYPASSANEKDFYNLL 117 (978)
T ss_pred CceEEEEee----cCCCCCCCcchHHHHHhhhCCCCCCCCChHHHHHHHhHHHHHhhccCCCcceeeccccCcchHHHHH
Confidence 556666665 678888999999999999999999999999999987 56669999999999999975 578999999
Q ss_pred HHHHHhhhCCCCChHHHHHH--------------HHHHHHHHHhhcCChHHHHHHHHHhhCCCCCCCCCCCcCChhhhhh
Q 004577 176 MRFSQFFISPLMKVEAMERE--------------VLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIG 241 (744)
Q Consensus 176 ~~l~~~~~~P~f~~~~~~~e--------------~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~ 241 (744)
.+++|.+.+|.+.++.|.+| .++|.+||++...++..++++.+.+.+||+..|+..+.|.+..|..
T Consensus 118 ~VYlDavf~PlL~~e~F~QEgwr~e~~~~~~l~~~GVVyNEMKGa~ss~~~~~~~~~~~slfp~~ty~~~SGG~P~~I~~ 197 (978)
T COG1026 118 SVYLDAVFHPLLTKESFLQEGWRIEFKDESNLKYKGVVYNEMKGAYSSGESVLSRAMQQSLFPGTTYGVNSGGDPKNIPD 197 (978)
T ss_pred HHHHHhhhCcccchHHHhhhhhccccCCCccceeeeEEeehhcccccCchhHHHHHHHHhhCCCccccccCCCCcccccc
Confidence 99999999999999999987 5789999999999999999999999999999999999999999999
Q ss_pred hhhcCccHHHHHHHHHHhcccCCCcEEEEEeCCCHHHHHHHHHHH-hccccCCCCCCCCCcccccccc--cceEE--EE-
Q 004577 242 AMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVEL-FANVRKGPQIKPQFTVEGTIWK--ACKLF--RL- 315 (744)
Q Consensus 242 ~~~~~~~~~~~l~~f~~~~y~~~~~~lvi~G~~~~~~l~~lv~~~-f~~i~~~~~~~~~~~~~~~~~~--~~~~~--~~- 315 (744)
++.+++++||++||+|+|++++++|+++++++.+.++.. |...+...... +.. +...+. ..... .+
T Consensus 198 ------LtyE~~r~FHkk~Y~pSN~~i~~yGni~~~~~L~~iee~~l~~~~k~~~~~-~i~-~~~~~~~~~~~~~~ypi~ 269 (978)
T COG1026 198 ------LTYEEFRAFHKKHYHPSNCKIFVYGNIPTERLLDFIEEKVLRPFGKRELDV-PIP-DQKAFKKPRRKVLEYPIS 269 (978)
T ss_pred ------cCHHHHHHHHHHhCCccceEEEEECCCCHHHHHHHHHHhhhccccccccCC-CCC-cccccCcccccceeeccC
Confidence 999999999999999999999999999999999999876 66655544221 111 112222 11111 11
Q ss_pred --eecccccEEEEEEEcCCCchhhhcchHHHHHHHhcCCCCchHHHHHHhcCCc-ceeecccCCCcCCccccccEEEEEE
Q 004577 316 --EAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWA-TSISAGVGDEGMHRSSIAYIFVMSI 392 (744)
Q Consensus 316 --~~~~~~~~l~l~~~~~~~~~~~~~~~~~~l~~lLg~~~~~~L~~~Lr~~gl~-y~~~~~~~~~~~~~~~~~g~f~i~~ 392 (744)
..+..+..+.+.|..+...+.++..++.+|.++|-+...+.|.+.|.+.|+. ..++..+... .- ...|.|.+
T Consensus 270 ~~~~de~q~~~~lsWl~~~~~d~~~~lal~vL~~iLl~~~asPl~~~liesglg~~~~~g~~~~~-~~----~~~f~v~~ 344 (978)
T COG1026 270 FDEEDEDQGLLSLSWLGGSASDAEDSLALEVLEEILLDSAASPLTQALIESGLGFADVSGSYDSD-LK----ETIFSVGL 344 (978)
T ss_pred CCCCCCceeEEEEEEecCCcccHHHHHHHHHHHHHHccCcccHHHHHHHHcCCCcccccceeccc-cc----eeEEEEEe
Confidence 2234577888999999998888999999999999988888899999988888 3333323321 11 12555555
Q ss_pred EeCchhhhcHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhcccccccCCCcHHH--HHHHHH-hcCCCCCcccccccc
Q 004577 393 HLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDY--AAELAG-NLLIYPAEHVIYGEY 469 (744)
Q Consensus 393 ~~~~~g~~~~~~v~~~i~~~l~~l~~~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~--~~~l~~-~~~~~~~~~~l~~~~ 469 (744)
.-.+ .++++++-+.|++.|+.+.++|++++.++.++.+...+.+-. .+.+... ...+.. +++..+|.+.|....
T Consensus 345 ~gv~--~ek~~~~k~lV~~~L~~l~~~gi~~~~ie~~~~q~E~s~ke~-~s~pfgl~l~~~~~~gw~~G~dp~~~Lr~~~ 421 (978)
T COG1026 345 KGVS--EEKIAKLKNLVLSTLKELVKNGIDKKLIEAILHQLEFSLKEV-KSYPFGLGLMFRSLYGWLNGGDPEDSLRFLD 421 (978)
T ss_pred cCCC--HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhh-cCCCccHHHHHHhccccccCCChhhhhhhHH
Confidence 4333 368999999999999999999999999999988877665432 2333322 222222 234456666665433
Q ss_pred c---cccCCHHH--HHHHHhc-cCccc-eEEEEEeCCCC-CCCCccccceeeceeeeecCChHHHHhhcCCCCC---CCC
Q 004577 470 M---YEVWDEEM--IKHLLGF-FMPEN-MRIDVVSKSFA-KSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEI---DVS 538 (744)
Q Consensus 470 ~---i~~vt~~~--i~~~~~~-l~~~n-~~i~i~~~~~~-~~~~~~~e~~~~~~y~~~~i~~~~l~~~~~~~~~---~~~ 538 (744)
. +.+.-... +++++++ +..++ ..++++.|+.. ..+..+.+. -...-....++++.+++....... ...
T Consensus 422 ~~~~Lr~~le~~~~fe~LI~ky~l~N~h~~~v~~~Ps~~~~~~~ekee~-e~L~~~~~~l~de~~~ki~~~~~~lke~Q~ 500 (978)
T COG1026 422 YLQNLREKLEKGPYFEKLIRKYFLDNPHYVTVIVLPSPELEEKLEKEER-ELLQKRSSELTDEDLEKIIKDSKKLKERQD 500 (978)
T ss_pred HHHHHHHhhhcChHHHHHHHHHhhcCCccEEEEEecChHHHHHHHHHHH-HHHHHHHhhcCHHHHHHHHHHHHHHHHhhc
Confidence 2 33332333 8999988 54444 67778888752 111111111 111112234444433333221100 000
Q ss_pred ccCC-CCCCCCCCCccccccCCCCCCCCCCCCeEEeecCCeeEEeecCCccCCceeeEEEEEeccCCCCCHHHHHHHHHH
Q 004577 539 LQLP-SQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELF 617 (744)
Q Consensus 539 l~lP-~~N~~ip~~~~l~~~~~~~~~~~~~~P~~~~~~~~~~vw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~~~~l~ 617 (744)
-..| ..+..+|+ +++.+++...+ ..+......+..+|-|++ .| +...+++++..+....+.....++.||
T Consensus 501 ~~dse~~~~~lP~-l~~~dvp~~~~----k~~l~~~~~~~~~v~~~~--~~--tn~i~yl~~~~~~~~l~~~llpyL~L~ 571 (978)
T COG1026 501 QPDSEEDLATLPT-LKLGDVPDPIE----KTSLETEVSNEAKVLHHD--LF--TNGITYLRLYFDLDMLPSELLPYLPLF 571 (978)
T ss_pred CCCchhhhhhccc-cchhcCCCccc----ccceeeeccCCcceEEee--cC--CCCeEEEEEEeecCCCChhhhhhHHHH
Confidence 1111 23456665 66666554433 245555566667775554 23 378888888888888889999999999
Q ss_pred HHHHHHHHHH-Hhhhh-------hhcceEEEEEEeC---------ceeEEEEEecCCCHHHHHHHHHHHHccCCC-CHHH
Q 004577 618 IHLLKDELNE-IIYQA-------SVAKLETSVSIFS---------DKLELKVYGFNDKLPVLLSKILAIAKSFLP-SDDR 679 (744)
Q Consensus 618 ~~ll~~~l~e-~~y~a-------~~agl~~~~~~~~---------~gi~l~~~G~~~kl~~ll~~i~~~l~~~~~-~~~~ 679 (744)
+.++....++ ..|.. ...|++.++++.. ..|.|++..+++|...+++.|-+.|.+..| +.+|
T Consensus 572 ~~~l~~lgt~~~~y~e~~~~i~~~TGgis~~~~~~~~~~~~~~~~~~~~i~~K~l~~k~~~~~~~i~~~l~~~~F~D~~R 651 (978)
T COG1026 572 AFALTNLGTETYSYKELLNQIERHTGGISVSLSVDTDPGDDGEYRPSFSISGKALRSKVEKLFELIREILANTDFHDRER 651 (978)
T ss_pred HHHHHhcCCCCcCHHHHHHHHHHHhCCceeeEeeccCCCccccccceEEEEEEehhhhhhHHHHHHHHHHhcCCcCcHHH
Confidence 9999987665 34422 3568888777643 678999999999999999999999999999 7899
Q ss_pred HHHHHHHHHHHHHccccC-hhHHHHHHHHH
Q 004577 680 FKVIKEDVVRTLKNTNMK-PLSHSSYLRLQ 708 (744)
Q Consensus 680 f~~~k~~~~~~~~n~~~~-p~~~a~~~~~~ 708 (744)
+..+.++++.++.+...+ ++..|......
T Consensus 652 lkell~q~~~~l~~~vr~sG~~~A~~~~~s 681 (978)
T COG1026 652 LKELLEQYLSDLTSSVRNSGHSIASSLANS 681 (978)
T ss_pred HHHHHHHHHhhhHHhhhccchHHHHHHhhc
Confidence 999999999999999988 88888877643
No 9
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-41 Score=329.26 Aligned_cols=398 Identities=14% Similarity=0.116 Sum_probs=339.4
Q ss_pred cccEEEeCCCCEEEEEeCCCCCcCCccccccCCCccccccccCccccccccccccccccchhhhhcccccccccceEEEE
Q 004577 23 LYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQTKKAAAA 102 (744)
Q Consensus 23 ~~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (744)
..|+.+|+|||+|..-..|+. .+.+.
T Consensus 24 ~~kvttL~NGlkvase~~pg~------------------------------------------------------f~~vG 49 (472)
T KOG2067|consen 24 NTKVTTLPNGLKVASENTPGQ------------------------------------------------------FCTVG 49 (472)
T ss_pred cceeeecCCccEEeccCCCCC------------------------------------------------------ceEEE
Confidence 788999999999998777655 99999
Q ss_pred EEecCCCCCCCCCCCCchHHHHHhcccCccCCCChhHHHHHHHhcCCccceeeCCCeeEEEEEeChhhHHHHHHHHHHhh
Q 004577 103 MCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFF 182 (744)
Q Consensus 103 l~v~~Gs~~dp~~~~GlAhllehmlf~Gs~~~~~~~~~~~~l~~~g~~~na~t~~d~t~~~~~~~~~~l~~~l~~l~~~~ 182 (744)
++++.|+++|.+...|++||+|.|+|..|.+++.. ++...|+.+||.+.+.+++|.+.|.+++.+++++.++.+++|.+
T Consensus 50 lyIdsGsrYE~~~~~GisH~lerLAF~ST~~~~~~-ei~~~LE~~GGn~~cqsSRetm~Yaas~~~~~v~sm~~lLadtV 128 (472)
T KOG2067|consen 50 LYIDSGSRYEAKYFSGISHFLERLAFKSTERFSSK-EILAELEKLGGNCDCQSSRETMMYAASADSDGVDSMVELLADTV 128 (472)
T ss_pred EEEecCccccCcCcccHHHHHHHHhhccccCCcHH-HHHHHHHHhCCcccccccHhhhHHHHHhhhcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999995 99999999999999999999999999999999999999999999
Q ss_pred hCCCCChHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhCCCCCCCCCCCcCChhhhhhhhhcCccHHHHHHHHHHhccc
Q 004577 183 ISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQ 262 (744)
Q Consensus 183 ~~P~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~f~~~~y~ 262 (744)
.+|.|++++++.++..|.-|+......|+-.+.+.++.++|.+++.+.+..+..+.+.. ++.+.|.+|.+++|+
T Consensus 129 ~~P~~~d~ev~~~~~~v~~E~~el~~~Pe~lL~e~iH~Aay~~ntlg~pl~cp~~~i~~------I~~~~l~~yl~~~yt 202 (472)
T KOG2067|consen 129 LNPKFTDQEVEEARRAVKYEIEELWMRPEPLLTEMIHSAAYSGNTLGLPLLCPEENIDK------INREVLEEYLKYFYT 202 (472)
T ss_pred hcccccHHHHHHHHHhhhheccccccCchhhHHHHHHHHHhccCcccccccCChhhhhh------hhHHHHHHHHHhcCC
Confidence 99999999999999999999998889999999999999999999999999988899988 999999999999999
Q ss_pred CCCcEEEEEeCCCHHHHHHHHHHHhccccCCCCCCCCCcccccccccceE------EEEeecccccEEEEEEEcCCCchh
Q 004577 263 GGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKL------FRLEAVKDVHILDLTWTLPCLHQE 336 (744)
Q Consensus 263 ~~~~~lvi~G~~~~~~l~~lv~~~f~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~l~~~~~~~~~~ 336 (744)
|.+|++..+| ++++++.+.++++|+.+|+...++... +...+.++.. -.+.....-.++.++|..++..+.
T Consensus 203 p~rmVlA~vG-V~heelv~~~~~~~~~~~s~~~p~i~~--~~aQYtGG~~~~~~d~~~~~~g~EltHv~lg~Eg~~~~de 279 (472)
T KOG2067|consen 203 PERMVLAGVG-VEHEELVEIAEKLLGDLPSTKVPPIDE--SKAQYTGGELKIDTDAPQVTGGPELTHVVLGFEGCSWNDE 279 (472)
T ss_pred hhheEeeecC-CCHHHHHHHHHHHhccCCccCCCCccc--chhhccccccccCCCCccccCccceeeeeEeeccCCCCCh
Confidence 9999999999 999999999999999999864433222 1112222211 111112256789999999997665
Q ss_pred hhcchHHHHHHHhcCCCC-----------chHHHHHH-hcCCcceeecccCCCcCCccccccEEEEEEEeCchhhhcHHH
Q 004577 337 YLKKSEDYLAHLLGHEGR-----------GSLHSFLK-GRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFD 404 (744)
Q Consensus 337 ~~~~~~~~l~~lLg~~~~-----------~~L~~~Lr-~~gl~y~~~~~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~ 404 (744)
+..++.+|+-+|||+++ +|||-.+- +..|+|+.-++... | +|+|+|+|++.+.| +++.+
T Consensus 280 -D~v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry~wv~sctAfnhs----y-~DtGlfgi~~s~~P---~~a~~ 350 (472)
T KOG2067|consen 280 -DFVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRYHWVYSCTAFNHS----Y-SDTGLFGIYASAPP---QAAND 350 (472)
T ss_pred -hHHHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhhHHHHHhhhhhcc----c-cCCceeEEeccCCH---HHHHH
Confidence 78999999999998765 56776555 88999998886654 3 37889999999999 89999
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHhhcccccccCCCcHHHHHHHHHhcCCCC----CccccccccccccCCHHHHH
Q 004577 405 IIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYP----AEHVIYGEYMYEVWDEEMIK 480 (744)
Q Consensus 405 v~~~i~~~l~~l~~~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~l~~~~~i~~vt~~~i~ 480 (744)
++..+.+++..+. .+++++|++|||++++..+.++-++.+. ..+.++++.+.++ |++++ ..|+++|++||.
T Consensus 351 aveli~~e~~~~~-~~v~~~el~RAK~qlkS~LlMNLESR~V-~~EDvGRQVL~~g~rk~p~e~~---~~Ie~lt~~DI~ 425 (472)
T KOG2067|consen 351 AVELIAKEMINMA-GGVTQEELERAKTQLKSMLLMNLESRPV-AFEDVGRQVLTTGERKPPDEFI---KKIEQLTPSDIS 425 (472)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHhcccccch-hHHHHhHHHHhccCcCCHHHHH---HHHHhcCHHHHH
Confidence 9999999999984 5699999999999999988877776665 5566777765443 33444 458999999999
Q ss_pred HHHhccCccceEEEEEeC
Q 004577 481 HLLGFFMPENMRIDVVSK 498 (744)
Q Consensus 481 ~~~~~l~~~n~~i~i~~~ 498 (744)
++++++...+..+.-.|.
T Consensus 426 rva~kvlt~~p~va~~Gd 443 (472)
T KOG2067|consen 426 RVASKVLTGKPSVAAFGD 443 (472)
T ss_pred HHHHHHhcCCceeccCCc
Confidence 999997767777665554
No 10
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-39 Score=337.30 Aligned_cols=587 Identities=12% Similarity=0.073 Sum_probs=433.2
Q ss_pred ecCCCCCCCCCCCCchHHHHHhcccCccCCCChhHHHHHHHh-cCCccceeeCCCeeEEEEE-eChhhHHHHHHHHHHhh
Q 004577 105 VGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSK-HGGSSNAYTETEHTCYHFE-IKREFLKGALMRFSQFF 182 (744)
Q Consensus 105 v~~Gs~~dp~~~~GlAhllehmlf~Gs~~~~~~~~~~~~l~~-~g~~~na~t~~d~t~~~~~-~~~~~l~~~l~~l~~~~ 182 (744)
|.++.+..|++..|+.|++||.+.+||.|||-.+.|.++|.+ +...+||+|..|+|.|.|. +.+++|.++.+++.|..
T Consensus 77 FsI~FrTpp~dstGiPHILEHtvLCGS~KYPvrdPFfkmLnrSLatFmNAfT~pD~T~yPfattN~kDf~NL~dVYLDAt 156 (998)
T KOG2019|consen 77 FSIVFRTPPKDSTGIPHILEHTVLCGSRKYPVRDPFFKMLNRSLATFMNAFTAPDYTFYPFATTNTKDFYNLRDVYLDAT 156 (998)
T ss_pred eEEEeecCCCccCCCchhhhhheeeccCcCcccChHHHHHHHHHHHHHhhccCCCcceeecccCChHHHHHHHHHhhhcc
Confidence 445556788999999999999999999999999999999986 4567799999999999996 56899999999999999
Q ss_pred hCCCCChHHHHHH------------------HHHHHHHHHhhcCChHHHHHHHHHhhCCCCCCCCCCCcCChhhhhhhhh
Q 004577 183 ISPLMKVEAMERE------------------VLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAME 244 (744)
Q Consensus 183 ~~P~f~~~~~~~e------------------~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~ 244 (744)
..|.+.+..|.+| +++|.+||+....++.+.+++.+.+.++|+|.|+..+.|++-.|.+
T Consensus 157 ffPklr~~dF~QEGWr~Eh~dpsd~~SpivfkGVVfNEMKG~~S~~~~if~~~~Qq~L~p~~tYgv~SGGDPl~Ipd--- 233 (998)
T KOG2019|consen 157 FFPKLRKLDFQQEGWRLEHNDPSDPISPIVFKGVVFNEMKGQYSDPDYIFGMLFQQALFPENTYGVNSGGDPLDIPD--- 233 (998)
T ss_pred cchHHHhhhhhhhcceeecCCCCCCcccceeeeeeeecccccccChhHHHHHHHHHhhCccccccccCCCCcccCcc---
Confidence 9999999999987 6899999999999999999999999999999999999999999998
Q ss_pred cCccHHHHHHHHHHhcccCCCcEEEEEeCCCHHHHHHHHHHHhccccCCCCCCCCCcccccccccceEE-EEe------e
Q 004577 245 KGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLF-RLE------A 317 (744)
Q Consensus 245 ~~~~~~~~l~~f~~~~y~~~~~~lvi~G~~~~~~l~~lv~~~f~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~------~ 317 (744)
++.+++++||++||+|+|+.+..+|+++++++..++..-|+.........+.. ....|...+.+ ..- .
T Consensus 234 ---Lt~eelk~FHr~~YHPSNAri~tYGn~Pl~~~l~~l~e~~~~~sk~~~s~kv~--~qk~f~kp~rvve~~p~d~~~~ 308 (998)
T KOG2019|consen 234 ---LTYEELKEFHRQHYHPSNARIFTYGNFPLEDLLKQLEEDFSPFSKRELSSKVT--FQKLFDKPRRVVEKGPADPGDL 308 (998)
T ss_pred ---ccHHHHHHHHHhccCCCcceeEeecCchHHHHHHHHHHhhcccccccccCccc--cccccccCceeeeecCCCCCCC
Confidence 99999999999999999999999999999999999987776654433221111 11333322222 221 1
Q ss_pred cccccEEEEEEEcCCCchhhhcchHHHHHHHhcCCCCchHHHHHHhcCCcce--eecccCCCcCCccccccEEEEEEEeC
Q 004577 318 VKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATS--ISAGVGDEGMHRSSIAYIFVMSIHLT 395 (744)
Q Consensus 318 ~~~~~~l~l~~~~~~~~~~~~~~~~~~l~~lLg~~~~~~L~~~Lr~~gl~y~--~~~~~~~~~~~~~~~~g~f~i~~~~~ 395 (744)
.+.+....+.|-.+...+.++..++.+|++++-++.++.+++.|.+.||... +++++... +..+.|.|.+...
T Consensus 309 p~Kq~~~s~s~L~~~p~d~~etfaL~~L~~Ll~~gpsSp~yk~LiESGLGtEfsvnsG~~~~-----t~~~~fsVGLqGv 383 (998)
T KOG2019|consen 309 PKKQTKCSNSFLSNDPLDTYETFALKVLSHLLLDGPSSPFYKALIESGLGTEFSVNSGYEDT-----TLQPQFSVGLQGV 383 (998)
T ss_pred ccceeEEEEEeecCCchhHHHHHHHHHHHHHhcCCCccHHHHHHHHcCCCcccccCCCCCcc-----cccceeeeeeccc
Confidence 2345667788888888888899999999999999888899999998888755 44454432 2345888888655
Q ss_pred chhhhcHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhcccccccCCCcHHHHHHHHHhcC-CCCCccccccccccc--
Q 004577 396 DSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLL-IYPAEHVIYGEYMYE-- 472 (744)
Q Consensus 396 ~~g~~~~~~v~~~i~~~l~~l~~~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~l~~~~~i~-- 472 (744)
.+ ++++++.+.|...++.|.+.|++.+.+++..+.+..+.+.+.......++..+...+. ..+|.+++.....+.
T Consensus 384 se--ediekve~lV~~t~~~lae~gfd~drieAil~qiEislk~qst~fGL~L~~~i~~~W~~d~DPfE~Lk~~~~L~~l 461 (998)
T KOG2019|consen 384 SE--EDIEKVEELVMNTFNKLAETGFDNDRIEAILHQIEISLKHQSTGFGLSLMQSIISKWINDMDPFEPLKFEEQLKKL 461 (998)
T ss_pred cH--HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhhccccchhHHHHHHHhhhhccCCCccchhhhhhHHHHH
Confidence 44 6999999999999999999999999999998887777766554444455555555543 456777776544333
Q ss_pred -----cCCHHHHHHHHhc-cCccc-eEEEEEeCCCCCCCCccccceeeceeeeecCChHHHHhhcCCCC-CCCCccCCCC
Q 004577 473 -----VWDEEMIKHLLGF-FMPEN-MRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPE-IDVSLQLPSQ 544 (744)
Q Consensus 473 -----~vt~~~i~~~~~~-l~~~n-~~i~i~~~~~~~~~~~~~e~~~~~~y~~~~i~~~~l~~~~~~~~-~~~~l~lP~~ 544 (744)
.-+..-++.++++ +..+. +..+-.-|+.+-.+..+.+.--..+-.+.+++++.++.+..... ......-|+.
T Consensus 462 k~~l~ek~~~lfq~lIkkYilnn~h~~t~smqpd~e~~~~~~~eE~tkL~ek~~alteeD~~ei~k~~~eL~~kQ~tp~d 541 (998)
T KOG2019|consen 462 KQRLAEKSKKLFQPLIKKYILNNPHCFTFSMQPDPEFAEKLEQEEATKLEEKKAALTEEDLAEIAKAGEELREKQSTPED 541 (998)
T ss_pred HHHHhhhchhHHHHHHHHHHhcCCceEEEEecCCchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCccc
Confidence 3356778889987 44333 33334445421011111122222333445666555544432110 0111233444
Q ss_pred CCCCCCCccccccCCCCCCCCCCCCeEEeecCCeeEEeecCCccCCceeeEEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q 004577 545 NEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDE 624 (744)
Q Consensus 545 N~~ip~~~~l~~~~~~~~~~~~~~P~~~~~~~~~~vw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~~~~l~~~ll~~~ 624 (744)
-.++|+ +.+.+++...+ ..|..+.+.+|+++.++- .|. .+.+|++..++......+-..++.|||..+.++
T Consensus 542 lsClPt-L~vsDIp~~~~----~~~~~v~dingvkv~~~d--l~t--ngi~Y~r~~~~l~~~p~eL~PylPlfc~sll~l 612 (998)
T KOG2019|consen 542 LSCLPT-LNVSDIPKTIP----YTKLEVGDINGVKVQRCD--LFT--NGITYTRVVFDLNSLPEELLPYLPLFCQSLLNL 612 (998)
T ss_pred cccccc-cccccCCCCCC----ccceeeeeccCceeEEee--ccC--CceEEEEEeeccccCcHHhhcchHHHHHHHHhc
Confidence 457776 66655443322 256777888898885543 333 679999999998888888999999999999887
Q ss_pred HHH--------HhhhhhhcceEEEEEEeC--------ceeEEEEEecCCCHHHHHHHHHHHHccCCCC-HHHHHHHHHHH
Q 004577 625 LNE--------IIYQASVAKLETSVSIFS--------DKLELKVYGFNDKLPVLLSKILAIAKSFLPS-DDRFKVIKEDV 687 (744)
Q Consensus 625 l~e--------~~y~a~~agl~~~~~~~~--------~gi~l~~~G~~~kl~~ll~~i~~~l~~~~~~-~~~f~~~k~~~ 687 (744)
.+. .......+|++.+..... .+|.+.-+....|.+.+++++-..+.+..|+ +++|+++..+.
T Consensus 613 Gt~~lsf~el~qqI~rkTGGiS~~p~~~s~~~~d~p~~~i~~~~~~l~rn~~dlfel~n~il~e~~f~n~dkfkvlvk~s 692 (998)
T KOG2019|consen 613 GTGDLSFVELEQQIGRKTGGISVSPLVSSDDGMDEPELGIVFSGSMLDRNADDLFELWNKILQETCFTNQDKFKVLVKQS 692 (998)
T ss_pred CCCcccHHHHHHHhhhhcCceeecceeccCCCCCccceeEEechhhhcCChhHHHHHHHHHhcccCcccHHHHHHHHHHH
Confidence 543 222334578887766532 3444455555678999999999999999986 78999999999
Q ss_pred HHHHHccccC-hhHHHHHHHHHhhcCCCC
Q 004577 688 VRTLKNTNMK-PLSHSSYLRLQVLCQSFY 715 (744)
Q Consensus 688 ~~~~~n~~~~-p~~~a~~~~~~ll~~~~~ 715 (744)
..++.|...+ .+..|.-.....|....|
T Consensus 693 ~s~~~n~i~dsGH~~A~~rs~a~l~~ag~ 721 (998)
T KOG2019|consen 693 ASRMTNGIADSGHGFAAARSAAMLTPAGW 721 (998)
T ss_pred HHHhhccCCcccchhHhhhhhcccCcccc
Confidence 9999999887 777777666665655555
No 11
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.8e-26 Score=237.98 Aligned_cols=588 Identities=15% Similarity=0.136 Sum_probs=359.3
Q ss_pred eEEEEEEecCCCCCCCCCCCCchHHHHHhcccCccCCCChhHHHHHHHhcCCccceeeCCCeeEEEEEe-ChhhHHHHHH
Q 004577 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEI-KREFLKGALM 176 (744)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~GlAhllehmlf~Gs~~~~~~~~~~~~l~~~g~~~na~t~~d~t~~~~~~-~~~~l~~~l~ 176 (744)
.+.-++.|..-..+ ..|+.|-+||++|+|+++||-..-+..+....-+..||+|+.|+|.|..+. ..+.|-.+|.
T Consensus 41 ~vhG~f~v~TEa~~----d~G~PHTLEHL~FMGSKkYP~kGvLd~~anr~l~dtNAwTDtD~T~YtLStag~dGFlklLP 116 (1022)
T KOG0961|consen 41 MVHGAFSVVTEADS----DDGLPHTLEHLVFMGSKKYPFKGVLDVIANRCLADTNAWTDTDHTAYTLSTAGSDGFLKLLP 116 (1022)
T ss_pred ceeeeEEeeeeecC----CCCCchhHHHHhhhccccCCcccHHHHhhcchhcccccccccCcceEEeecccccchHHHhH
Confidence 77777777765544 469999999999999999999654544444555789999999999999985 5789999999
Q ss_pred HHHHhhhCCCCChHHHHHHH----------HHHHHHHHhhcCChHHHHHHHHHhhCCC-CCCCCCCCcCChhhhhhhhhc
Q 004577 177 RFSQFFISPLMKVEAMEREV----------LAVDSEFNQALQNDACRLQQLQCHTSQL-GHAFNKFFWGNKKSLIGAMEK 245 (744)
Q Consensus 177 ~l~~~~~~P~f~~~~~~~e~----------~~v~~e~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~G~~~~l~~~~~~ 245 (744)
++.+.+.+|.+++++|-.|+ ++|.+|++.........+.+..+...|| .++|.....|-+..|+.
T Consensus 117 vy~dHiL~P~Ltdeaf~TEVyHI~geg~d~GVVySEMq~~es~~~~im~~~~~~~~yP~~sgY~~eTGG~~knLR~---- 192 (1022)
T KOG0961|consen 117 VYIDHILTPMLTDEAFATEVYHITGEGNDAGVVYSEMQDHESEMESIMDRKTKEVIYPPFSGYAVETGGRLKNLRE---- 192 (1022)
T ss_pred HHHHhhcCcccchhhhhhheeeecCCCCccceeehhhhhhhcccchhhhhhhheeecCCCCCceeccCCChhhHHH----
Confidence 99999999999999999874 7889999988888888888888887775 68999999999999998
Q ss_pred CccHHHHHHHHHHhcccCCCcEEEEEeCCCHHHHHHHHHHHhccccCCCCCC-CCCcccc----cccc--cceEEEE---
Q 004577 246 GINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIK-PQFTVEG----TIWK--ACKLFRL--- 315 (744)
Q Consensus 246 ~~~~~~~l~~f~~~~y~~~~~~lvi~G~~~~~~l~~lv~~~f~~i~~~~~~~-~~~~~~~----~~~~--~~~~~~~--- 315 (744)
+|.+.+++||+++|+++||+++|+|.++.+++.......-..|+...... +.++.|- .+.. ....-.+
T Consensus 193 --lt~ekIR~yHK~~Y~~sN~cviVcG~v~~d~lL~~m~~~~neile~~s~vP~~~~rPf~~tn~~~~i~e~t~~tVefp 270 (1022)
T KOG0961|consen 193 --LTLEKIRDYHKKFYHLSNMCVIVCGMVDHDQLLEIMNNVENEILEHMSTVPDHFPRPFSFTNALSDIKESTVHTVEFP 270 (1022)
T ss_pred --hhHHHHHHHHHHhccccceEEEEecCcCHHHHHHHHHHHHhhhhhccccCCCCCCCCcccccCcccCCccceeeeecC
Confidence 99999999999999999999999999999999988876655444332211 1121110 0001 1111111
Q ss_pred eecccccEEEEEEEcCCCchhhhcchHHHHHHHhcCCCCchHHHHHH--hcCCcceeecccCCCcCCccccccEEEEEEE
Q 004577 316 EAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLK--GRGWATSISAGVGDEGMHRSSIAYIFVMSIH 393 (744)
Q Consensus 316 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~l~~lLg~~~~~~L~~~Lr--~~gl~y~~~~~~~~~~~~~~~~~g~f~i~~~ 393 (744)
..+..+..+.++|..++..+.+.-.++++|..+|....-+.+-+.+. +.-++.+++......- .....+.+.
T Consensus 271 ~~Des~G~v~~aW~g~s~sD~~t~~a~~vL~dyls~savapf~~~fVeieDP~assv~f~~~~~v------rc~i~L~f~ 344 (1022)
T KOG0961|consen 271 TDDESRGAVEVAWFGHSPSDLETHSALHVLFDYLSNSAVAPFQKDFVEIEDPLASSVSFHIAEGV------RCDIRLNFA 344 (1022)
T ss_pred CcccccceEEEEEcCCCHHHhhhHHHHHHHHHHhccccccccccceEEecCccccceeeeeeccc------ceeEEEeec
Confidence 22445778999999999887777789999999999866666666555 6778888776554321 114444444
Q ss_pred eCchhhhcHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhcccccccCCCc-HHHHHHHHHhcCCCCCcc---------
Q 004577 394 LTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQ-DDYAAELAGNLLIYPAEH--------- 463 (744)
Q Consensus 394 ~~~~g~~~~~~v~~~i~~~l~~l~~~~~~~~~l~~~k~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~--------- 463 (744)
.-|. ++++.....+++.+. .+..++-+.+......-+.++....+.++ .++.+.+.. -+.|+.++
T Consensus 345 gVP~--EKi~~~~~k~l~~l~--et~~iDm~Rm~~~i~~t~~~yL~nlE~n~~s~fms~ii~-d~~ygnedg~~l~~~lk 419 (1022)
T KOG0961|consen 345 GVPV--EKIDECAPKFLDKLV--ETANIDMERMGYLIDQTILNYLVNLETNAPSDFMSHIIG-DQLYGNEDGELLKKRLK 419 (1022)
T ss_pred CCcH--HHhhhhhHHHHHHHH--HhcccCHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHhh-hhhccCcchhHHHHHHH
Confidence 4342 555555555444443 35566655554444433344433333333 344444432 22333221
Q ss_pred ccccccccccCCHHHHHHHHhc-cCccceEEEEEeCCCCCCCCccccceeeceeeeecCChH----HHHhhcCCCCCCCC
Q 004577 464 VIYGEYMYEVWDEEMIKHLLGF-FMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPS----LMELWRNPPEIDVS 538 (744)
Q Consensus 464 ~l~~~~~i~~vt~~~i~~~~~~-l~~~n~~i~i~~~~~~~~~~~~~e~~~~~~y~~~~i~~~----~l~~~~~~~~~~~~ 538 (744)
-+...+.+.++...|..+++++ +.-++..+++..|.+.-.+...+|.--.+.-..+.+.++ ..++...... ..+
T Consensus 420 ~l~~~~~L~~w~~kdW~~Llnk~Fven~s~tVia~Ps~em~e~i~kE~~~~i~~r~~~lg~~gle~l~k~L~~ak~-~N~ 498 (1022)
T KOG0961|consen 420 ELDFLKKLKSWPAKDWVQLLNKYFVENPSATVIAVPSEEMVEKIAKEEEKRIAARCEKLGKKGLEELGKSLEAAKL-ENT 498 (1022)
T ss_pred hHHHHHHHhhccHHHHHHHHHHHhccCCCeEEEecCcHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHhhh-ccc
Confidence 1222345778999999999999 555666667777865200000011101111122222221 1222211110 000
Q ss_pred ccCCC----------C--CCCCCCCccccccCCCCCCCCCCCCeEEeecCCeeEEeecCCccCCceeeEEEEEeccCCCC
Q 004577 539 LQLPS----------Q--NEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYD 606 (744)
Q Consensus 539 l~lP~----------~--N~~ip~~~~l~~~~~~~~~~~~~~P~~~~~~~~~~vw~~~d~~f~~Pk~~i~~~~~~~~~~~ 606 (744)
-.+|. | =.|.- .+++.......+--....|.+-..-....++.+.++ .|...|.+.|.-.....
T Consensus 499 ~~~p~~ll~~f~I~~peS~ef~~-~~~v~t~~s~~pfdne~~~~~~T~~~~fp~fi~l~h---~ps~Fvel~fl~dss~i 574 (1022)
T KOG0961|consen 499 ANHPSALLLDFLIVKPESLEFFD-RFPVQTLTSNSPFDNELTPQQSTFLAQFPFFINLHH---CPSKFVELFFLLDSSNI 574 (1022)
T ss_pred CCCCHHHHhheeccCchheeeee-ccceeeccCCCCCCccccceeecccccCCceeeccc---CchHHHhHhhhhccccC
Confidence 11111 0 01110 011111111110000001222111122223332222 34555555554444444
Q ss_pred CHHHHHHHHHHHHHHHHH---HHH------H-hhh---hh--hcceEEEEEEeC-----ceeEEEEEecCCCHHHHHHHH
Q 004577 607 NVKNCILTELFIHLLKDE---LNE------I-IYQ---AS--VAKLETSVSIFS-----DKLELKVYGFNDKLPVLLSKI 666 (744)
Q Consensus 607 ~~~~~~~~~l~~~ll~~~---l~e------~-~y~---a~--~agl~~~~~~~~-----~gi~l~~~G~~~kl~~ll~~i 666 (744)
+.....++.+|..++.+. |.+ . ... +. -.-++.++..+. .=+.+.|..-.++-+.+++.|
T Consensus 575 ~~sl~pYl~~f~~l~~~~pa~ldgtiptp~~~s~~~v~~~~~s~~id~si~~g~~G~~~~lvn~~Ikv~a~~Y~~~v~Wi 654 (1022)
T KOG0961|consen 575 SISLRPYLFLFTDLLFESPAMLDGTIPTPVLTSADDVAKHFTSDLIDHSIQVGVSGLYDRLVNLRIKVGADKYPLLVKWI 654 (1022)
T ss_pred chhhhhHHHHHHHHHhcCHHHhcCCCCcchhhhHHHHHHHHHhhhhhhhhcccccccchhheeEEEEEccCCcchhHHHH
Confidence 455667777777776543 211 0 000 00 012223333222 346888888889999999999
Q ss_pred HHHHccCCCCHHHHHHHHHHHHHHHHccccChhHHHHHHHHHhhc
Q 004577 667 LAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLC 711 (744)
Q Consensus 667 ~~~l~~~~~~~~~f~~~k~~~~~~~~n~~~~p~~~a~~~~~~ll~ 711 (744)
-..+...-++++|..+..++++.++..+..+.-..+..+....|+
T Consensus 655 ~~~l~~~VfD~~Ri~~~~~~~l~~i~~~KRdg~~vlss~~~~~lY 699 (1022)
T KOG0961|consen 655 QIFLQGVVFDPSRIHQCAQKLLGEIRDRKRDGCTVLSSAVASMLY 699 (1022)
T ss_pred HHHhhhhccCHHHHHHHHHHHHhhhhhhhcCccEehHHHHHHHHh
Confidence 999999999999999999999999988877754444444444443
No 12
>PRK15101 protease3; Provisional
Probab=99.95 E-value=2e-26 Score=278.66 Aligned_cols=393 Identities=10% Similarity=-0.004 Sum_probs=287.0
Q ss_pred ccccEEEeCCCCEEEEEeCC---CCCcCCccccccCCCccccccccCccccccccccccccccchhhhhcccccccccce
Q 004577 22 RLYRVIELENRLCALLVHDP---EIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQTKK 98 (744)
Q Consensus 22 ~~~~~~~L~NGl~v~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (744)
.....+.++||++|++++|+ .. | +
T Consensus 521 ~~p~~i~~~~g~~vw~~~d~~f~~~--------------P---------------------------------------k 547 (961)
T PRK15101 521 KHPELIVDEPGLRVVYMPSQYFADE--------------P---------------------------------------K 547 (961)
T ss_pred CCCeEEEcCCCeEEEEeCCCccccC--------------C---------------------------------------C
Confidence 34578999999999999998 56 6 9
Q ss_pred EEEEEEecCCCCCCCCCCCCchHHHHHhcccCccCCCChhHHHHHHHhcCCccceeeCCCeeEEEEEeChhhHHHHHHHH
Q 004577 99 AAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRF 178 (744)
Q Consensus 99 ~~~~l~v~~Gs~~dp~~~~GlAhllehmlf~Gs~~~~~~~~~~~~l~~~g~~~na~t~~d~t~~~~~~~~~~l~~~l~~l 178 (744)
+.+.+.+..|...++....|++.++..|+.. . -+++....+..|.+++.. +.+.+.+++++.+++++.+|+++
T Consensus 548 ~~i~~~~~~~~~~~~~~~~~l~~L~~~ll~~-----~-l~e~~y~a~~aG~~~~~~-~~~g~~i~v~g~s~~l~~ll~~l 620 (961)
T PRK15101 548 ADISLVLRNPKAMDSARNQVLFALNDYLAGL-----A-LDQLSNQASVGGISFSTN-ANNGLMVNANGYTQRLPQLLQAL 620 (961)
T ss_pred EEEEEEEeCCCccCCHHHHHHHHHHHHHHHH-----H-HHHHhchHHhcCcEEEEc-cCCCEEEEEEecChhHHHHHHHH
Confidence 9999999999999998999999999988721 1 134544455678888888 78999999999999999999999
Q ss_pred HHhhhCCCCChHHHHHHHHHHHHHHHhhcCChHHHHHHHHHh-hCCCCCCCCCCCcCChhhhhhhhhcCccHHHHHHHHH
Q 004577 179 SQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCH-TSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLY 257 (744)
Q Consensus 179 ~~~~~~P~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~f~ 257 (744)
.+.+.+|.|+++.|+++|+.+.+++++...+ ..+.+.+.. ..+.+|||+.. .|..++|.+ ++.++|++||
T Consensus 621 ~d~l~~~~~~~~~fe~~k~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~py~~~-~~~~~~l~~------it~edl~~f~ 691 (961)
T PRK15101 621 LEGYFSFTPTEEQLAQAKSWYREQLDSAEKG--KAYEQAIMPAQMLSQVPYFER-DERRKLLPS------ITLKDVLAYR 691 (961)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhhhccc--CcHHHHHHHHHHHhcCCCCCH-HHHHHHHhc------CCHHHHHHHH
Confidence 9999999999999999999999999876542 222333321 34568999864 678888888 9999999999
Q ss_pred HhcccCCCcEEEEEeCCCHHHHHHHHHHHhccccCCCCCCCCCcccccccccceE-EEEeecccccEEEEEEEcCCCchh
Q 004577 258 MNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKL-FRLEAVKDVHILDLTWTLPCLHQE 336 (744)
Q Consensus 258 ~~~y~~~~~~lvi~G~~~~~~l~~lv~~~f~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~l~~~~~~~~~~ 336 (744)
+++|++.+++++|+||++.+++.++++++++.++.......... .......... +...+...+..+.+.|..++..
T Consensus 692 ~~~~~~~~~~~~v~GNi~~~ea~~l~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-- 768 (961)
T PRK15101 692 DALLSGATPEFLVVGNLTEEQVTTLARDVQKQLGADGTEWWRGK-DVVVDKKQSVNFEKAGSSTDSALAAVYVPTGYD-- 768 (961)
T ss_pred HHHHHhceEEEEEEcCCCHHHHHHHHHHHHHHhccCCccccccc-ceEeCCCCeEEEecCCCCCCCeEEEEEEeCCCC--
Confidence 99999999999999999999999999999988875322110000 0000011112 2222233345566666444432
Q ss_pred hhcchHHHHHHHhcCCCCchHHHHHH-hcCCcceeecccCCCcCCccccccEEEEEEEeCchhhhcHHHHHHHHHHHHHH
Q 004577 337 YLKKSEDYLAHLLGHEGRGSLHSFLK-GRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKL 415 (744)
Q Consensus 337 ~~~~~~~~l~~lLg~~~~~~L~~~Lr-~~gl~y~~~~~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~ 415 (744)
..+..+++.+||+...++|+..|| ++||+|+++++..... ..+.+.+.++....+.+.+.+.++.+++.+..
T Consensus 769 --~~~~~v~~~lLg~~~ssrlf~~LRtk~qLgY~V~s~~~~~~-----~~~~~~~~vqs~~~~~~~l~~~i~~f~~~~~~ 841 (961)
T PRK15101 769 --EYQSSAYSSLLGQIIQPWFYNQLRTEEQLGYAVFAFPMSVG-----RQWGMGFLLQSNDKQPAYLWQRYQAFFPQAEA 841 (961)
T ss_pred --CHHHHHHHHHHHHHHhHHHHHHHHHHhhhceEEEEEeeccC-----CeeeEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 246788999999988999999999 9999999999866531 12244455544442335566666666555433
Q ss_pred HHhcCCchhHHHHHHHHhhcccccccCCCcHHHHHHHHHhcC--CCCCccccccccccccCCHHHHHHHHhc--cCccce
Q 004577 416 LRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLL--IYPAEHVIYGEYMYEVWDEEMIKHLLGF--FMPENM 491 (744)
Q Consensus 416 l~~~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~l~~~~~i~~vt~~~i~~~~~~--l~~~n~ 491 (744)
.. .++++++|+++|+.+...+....+ +..+.+..+...+. .++.+........++++|++||++++++ +.+++.
T Consensus 842 ~l-~~lt~eE~~~~k~~l~~~~~~~~~-sl~~~a~~~~~~i~~~~~~fd~~~~~~~~i~~vT~edv~~~~~~~~~~~~~~ 919 (961)
T PRK15101 842 KL-RAMKPEEFAQYQQALINQLLQAPQ-TLGEEASRLSKDFDRGNMRFDSRDKIIAQIKLLTPQKLADFFHQAVIEPQGL 919 (961)
T ss_pred HH-HhCCHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCCCcChHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Confidence 22 489999999999999998876554 55556666655443 3344444445667899999999999988 357775
Q ss_pred EEEE
Q 004577 492 RIDV 495 (744)
Q Consensus 492 ~i~i 495 (744)
++++
T Consensus 920 ~~~~ 923 (961)
T PRK15101 920 AILS 923 (961)
T ss_pred EEEE
Confidence 5543
No 13
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=99.94 E-value=5.7e-24 Score=211.47 Aligned_cols=391 Identities=13% Similarity=0.105 Sum_probs=286.7
Q ss_pred cccEEEeCCCCEEEEEeCCCCCcCCccccccCCCccccccccCccccccccccccccccchhhhhcccccccccceEEEE
Q 004577 23 LYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQTKKAAAA 102 (744)
Q Consensus 23 ~~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (744)
.-..-+|.|||+|--+..+.. ++.+.
T Consensus 22 ~~~~~kl~ngL~Vas~e~~~~------------------------------------------------------is~l~ 47 (429)
T KOG2583|consen 22 ISKTTKLVNGLTVASREAPTA------------------------------------------------------ISSLS 47 (429)
T ss_pred hhhhhccccceEEEeccCCCc------------------------------------------------------ceEEE
Confidence 345678999999999998877 99999
Q ss_pred EEecCCCCCCCCCCCCchHHHHHhcccCccCCCChhHHHHHHHhcCCccceeeCCCeeEEEEEeChhhHHHHHHHHHHhh
Q 004577 103 MCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFF 182 (744)
Q Consensus 103 l~v~~Gs~~dp~~~~GlAhllehmlf~Gs~~~~~~~~~~~~l~~~g~~~na~t~~d~t~~~~~~~~~~l~~~l~~l~~~~ 182 (744)
+.|++||+++|.+++|++|+++...++-|+.+|. ..+.+-.+..||.++.++++|...|.++++.++++-.|.+|.+..
T Consensus 48 l~~~AGSRYe~~~~~G~sHllr~f~g~~Tq~~sa-l~ivr~se~~GG~Lss~~tRe~~~~tvt~lrd~~~~~l~~L~~V~ 126 (429)
T KOG2583|consen 48 LAFRAGSRYEPADQQGLSHLLRNFVGRDTQERSA-LKIVRESEQLGGTLSSTATRELIGLTVTFLRDDLEYYLSLLGDVL 126 (429)
T ss_pred EEEecCccCCccccccHHHHHHHhcccCccccch-hhhhhhhHhhCceeeeeeecceEEEEEEEecccHHHHHHHHHHhh
Confidence 9999999999999999999999999999999998 799999999999999999999999999999999999999999999
Q ss_pred hCCCCChHHHHHHH-HHHHHHHHhhcCChHHHHHHHHHhhCCCCCCCCCCCcCChhhhhhhhhcCccHHHHHHHHHHhcc
Q 004577 183 ISPLMKVEAMEREV-LAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYY 261 (744)
Q Consensus 183 ~~P~f~~~~~~~e~-~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~f~~~~y 261 (744)
..|.|.+++++.++ ..+..+.. ..+|..+..+.+++.+|-+ ..+....-..-.+.. ++.++|.+|-+++|
T Consensus 127 ~~paFkPwEl~D~~~~ti~~~l~--~~t~~~~a~e~lH~aAfRn-gLgnslY~p~~~vg~------vss~eL~~Fa~k~f 197 (429)
T KOG2583|consen 127 DAPAFKPWELEDVVLATIDADLA--YQTPYTIAIEQLHAAAFRN-GLGNSLYSPGYQVGS------VSSSELKDFAAKHF 197 (429)
T ss_pred cccCcCchhhhhhhhhhhHHHhh--hcChHHHHHHHHHHHHHhc-ccCCcccCCcccccC------ccHHHHHHHHHHHh
Confidence 99999999999988 66666654 5789999999999888854 333332222222334 89999999999999
Q ss_pred cCCCcEEEEEeCCCHHHHHHHHHHHhccccCCCCCCCCCcccccccccceEEEEeecccccEEEEEEEcCC--Cchhhhc
Q 004577 262 QGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPC--LHQEYLK 339 (744)
Q Consensus 262 ~~~~~~lvi~G~~~~~~l~~lv~~~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~--~~~~~~~ 339 (744)
..+||.++-+| ++.+.|..++++++ .++.+....+. | ..+..+... .. .......+.+...+ ..+....
T Consensus 198 v~gn~~lvg~n-vd~~~L~~~~~~~~-~~~~~~~~k~a---~-a~~~gGe~R-k~--~~g~~~~v~vagegAAa~~~k~~ 268 (429)
T KOG2583|consen 198 VKGNAVLVGVN-VDHDDLKQFADEYA-PIRDGLPLKPA---P-AKYSGGEAR-KD--ARGNRVHVAVAGEGAAAGNLKVL 268 (429)
T ss_pred hccceEEEecC-CChHHHHHHHHHhc-cccCCCCCCCC---C-ccccCCccc-cc--cCCceeEEEEecCcccccchHHH
Confidence 99999999998 89999999999983 33322221111 0 111122222 11 12234444444444 2334455
Q ss_pred chHHHHHHHhcCCCC----chHHHHHHhcCCcceeecccCCCcCCccccccEEEEEEEeCchhhhcHHHHHHHHHHHHHH
Q 004577 340 KSEDYLAHLLGHEGR----GSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKL 415 (744)
Q Consensus 340 ~~~~~l~~lLg~~~~----~~L~~~Lr~~gl~y~~~~~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~ 415 (744)
.+..++.+.||...+ .+++..+-..-.-+.+++.... ..| +|.|+|+|++..+. .++.+++..+...++.
T Consensus 269 ~a~av~~~~Lg~~~~~k~~t~~~~~aa~~a~~~~~s~sA~~--a~y-sDsGL~gv~~~~~~---~~a~~~v~s~v~~lks 342 (429)
T KOG2583|consen 269 AAQAVLLAALGNSAPVKRGTGLLSEAAGAAGEQGASASAFN--APY-SDSGLFGVYVSAQG---SQAGKVVSSEVKKLKS 342 (429)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHhhccccCceeeeec--ccc-cCCceEEEEEEecC---ccHHHHHHHHHHHHHH
Confidence 677888999997663 4555555522222333322211 123 37889999998877 6888999998888888
Q ss_pred HHhcCCchhHHHHHHHHhhcccccccCCCcHHHHHHHHHhcCCCCCccccccccccccCCHHHHHHHHhccCccceEEEE
Q 004577 416 LRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDV 495 (744)
Q Consensus 416 l~~~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~i~~vt~~~i~~~~~~l~~~n~~i~i 495 (744)
.+..+++......+.+.++....... .+.........++- -+++.++.. |++|++.||+++++++......++.
T Consensus 343 ~~~~~id~~~~~a~~~~l~~~~~ss~--~a~~~~~~~~a~~~-~~~d~~i~~---id~Vt~sdV~~a~kk~~s~kls~aA 416 (429)
T KOG2583|consen 343 ALVSDIDNAKVKAAIKALKASYLSSV--EALELATGSQANLV-SEPDAFIQQ---IDKVTASDVQKAAKKFLSGKLSLAA 416 (429)
T ss_pred HHhcCCcchHHHHHHHHHHHHhhcch--HHHHHhhHHHhcCC-CChHHHHHH---hccccHHHHHHHHHHhccCcceeee
Confidence 88888888777777776666543221 12222222221111 145556554 8999999999999998888888887
Q ss_pred EeC
Q 004577 496 VSK 498 (744)
Q Consensus 496 ~~~ 498 (744)
+|.
T Consensus 417 ~Gn 419 (429)
T KOG2583|consen 417 YGN 419 (429)
T ss_pred ecc
Confidence 775
No 14
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=99.90 E-value=3.4e-23 Score=192.68 Aligned_cols=137 Identities=27% Similarity=0.380 Sum_probs=132.2
Q ss_pred eEEEEEEecCCCCCCCCCCCCchHHHHHhcccCccCCCChhHHHHHHHhcCCccceeeCCCeeEEEEEeChhhHHHHHHH
Q 004577 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMR 177 (744)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~GlAhllehmlf~Gs~~~~~~~~~~~~l~~~g~~~na~t~~d~t~~~~~~~~~~l~~~l~~ 177 (744)
.++++++|++|+.+||++.+|+||+++||++.||++++. .++.+.++.+|+.++++|+.++|.|++++++++++.+|++
T Consensus 12 ~~~~~l~~~~Gs~~e~~~~~G~a~ll~~l~~~gs~~~~~-~~l~~~l~~~G~~~~~~t~~d~t~~~~~~~~~~~~~~l~~ 90 (149)
T PF00675_consen 12 VVSVSLVFKAGSRYEPPGKPGLAHLLEHLLFRGSKKYSS-DELQEELESLGASFNASTSRDSTSYSASVLSEDLEKALEL 90 (149)
T ss_dssp EEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSBH-HHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHH
T ss_pred EEEEEEEEeeccCCCCCCCCchhhhhhhhcccccchhhh-hhhHHHhhhhccccceEecccceEEEEEEecccchhHHHH
Confidence 999999999999999999999999999999999999998 7999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCChHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhCCCCCCCCCCCcCC
Q 004577 178 FSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGN 235 (744)
Q Consensus 178 l~~~~~~P~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~ 235 (744)
+++++.+|.|++++|+++|..+..|++....+|..++.+.+.+.+|.+|||+++..|+
T Consensus 91 l~~~~~~P~f~~~~~~~~r~~~~~ei~~~~~~~~~~~~~~l~~~~f~~~p~~~~~~~~ 148 (149)
T PF00675_consen 91 LADMLFNPSFDEEEFEREREQILQEIEEIKENPQELAFEKLHSAAFRGHPYGNPLLGP 148 (149)
T ss_dssp HHHHHHSBGGCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSGGGSHSS-T
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhccCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999988875
No 15
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=99.85 E-value=4.3e-20 Score=178.45 Aligned_cols=178 Identities=20% Similarity=0.233 Sum_probs=142.0
Q ss_pred cHHHHHHHHHHhcccCCCcEEEEEeCCCHHHHHHHHHHHhccccCCC---CCCCCCcccccccccceEEEEeecc-cccE
Q 004577 248 NLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGP---QIKPQFTVEGTIWKACKLFRLEAVK-DVHI 323 (744)
Q Consensus 248 ~~~~~l~~f~~~~y~~~~~~lvi~G~~~~~~l~~lv~~~f~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 323 (744)
++.++|++||++||+|+||+++|+||++.++++++|+++|+.|+... ...+......+.......+...... +...
T Consensus 2 it~e~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T PF05193_consen 2 ITLEDLRAFYKKFYRPSNMTLVIVGDIDPDELEKLIEKYFGSLPKSSIPPKPKPRSPPLPPSEPQGKEIVIPSKDESQSI 81 (184)
T ss_dssp --HHHHHHHHHHHSSGGGEEEEEEESSGHHHHHHHHHHHHTTSSHSCHGGSSSCSSSSSSCGGSSEEEEEEEESSSSSEE
T ss_pred CCHHHHHHHHHHhcCccceEEEEEcCccHHHHHHHHHhhhhhhccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999999999999999999999999999999999764 2111111011111223333333322 6889
Q ss_pred EEEEEEcCCCchhhhcchHHHHHHHhcCCCCchHHHHHH-hcCCcceeecccCCCcCCccccccEEEEEEEeCchhhhcH
Q 004577 324 LDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLK-GRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKI 402 (744)
Q Consensus 324 l~l~~~~~~~~~~~~~~~~~~l~~lLg~~~~~~L~~~Lr-~~gl~y~~~~~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~ 402 (744)
+.+.|+.+......+..++.+++.+|++...++|+..|| ++|++|+++++..... +.|.|.|.+.+++ +++
T Consensus 82 v~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~l~~~lr~~~~l~y~v~~~~~~~~-----~~~~~~i~~~~~~---~~~ 153 (184)
T PF05193_consen 82 VSIAFPGPPIKDSKDYFALNLLSSLLGNGMSSRLFQELREKQGLAYSVSASNSSYR-----DSGLFSISFQVTP---ENL 153 (184)
T ss_dssp EEEEEEEEETGTSTTHHHHHHHHHHHHCSTTSHHHHHHHTTTTSESEEEEEEEEES-----SEEEEEEEEEEEG---GGH
T ss_pred cccccccccccccchhhHHHHHHHHHhcCccchhHHHHHhccccceEEEeeeeccc-----cceEEEEEEEcCc---ccH
Confidence 999999999855557789999999999999999999999 9999999998854321 3559999999998 689
Q ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHh
Q 004577 403 FDIIGFVYQYIKLLRQVSPQKWIFKELQDIG 433 (744)
Q Consensus 403 ~~v~~~i~~~l~~l~~~~~~~~~l~~~k~~~ 433 (744)
+++++.+.++|+.+++.|+++++|+++|+.+
T Consensus 154 ~~~~~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 154 DEAIEAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp HHHHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 9999999999999999999999999999764
No 16
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.32 E-value=9.5e-10 Score=123.98 Aligned_cols=378 Identities=12% Similarity=0.052 Sum_probs=230.5
Q ss_pred eEEEEEEecCCCCCCCCCCCCchHHHHHhcccCccCCCChhHHHHHHHhcCCcc----ceeeCC-------CeeEEEEEe
Q 004577 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSS----NAYTET-------EHTCYHFEI 166 (744)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~GlAhllehmlf~Gs~~~~~~~~~~~~l~~~g~~~----na~t~~-------d~t~~~~~~ 166 (744)
.+.+.+.+..+. -.....|=+.-|..-+.-.||++++- .++.+++..+-|.+ ++.++. ....+.+.+
T Consensus 548 i~yl~~~~~~~~-l~~~llpyL~L~~~~l~~lgt~~~~y-~e~~~~i~~~TGgis~~~~~~~~~~~~~~~~~~~~i~~K~ 625 (978)
T COG1026 548 ITYLRLYFDLDM-LPSELLPYLPLFAFALTNLGTETYSY-KELLNQIERHTGGISVSLSVDTDPGDDGEYRPSFSISGKA 625 (978)
T ss_pred eEEEEEEeecCC-CChhhhhhHHHHHHHHHhcCCCCcCH-HHHHHHHHHHhCCceeeEeeccCCCccccccceEEEEEEe
Confidence 999999999944 44455777777777777799999998 47888888764433 333333 334566678
Q ss_pred ChhhHHHHHHHHHHhhhCCCC-ChHHHHHHHHHHHHHHHhhcCC-hHHHHHHHHHhhCCCCCCCCCCCcCC--hhhhhhh
Q 004577 167 KREFLKGALMRFSQFFISPLM-KVEAMEREVLAVDSEFNQALQN-DACRLQQLQCHTSQLGHAFNKFFWGN--KKSLIGA 242 (744)
Q Consensus 167 ~~~~l~~~l~~l~~~~~~P~f-~~~~~~~e~~~v~~e~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~G~--~~~l~~~ 242 (744)
.+...+.++.++.+++.++.| +.+.+........+.+.....+ +...+......-.+....+.....|- .+-|++-
T Consensus 626 l~~k~~~~~~~i~~~l~~~~F~D~~Rlkell~q~~~~l~~~vr~sG~~~A~~~~~s~~~~~~~l~e~~~Gl~q~k~i~~l 705 (978)
T COG1026 626 LRSKVEKLFELIREILANTDFHDRERLKELLEQYLSDLTSSVRNSGHSIASSLANSRLSSAGALKELLNGLSQVKFLREL 705 (978)
T ss_pred hhhhhhHHHHHHHHHHhcCCcCcHHHHHHHHHHHHhhhHHhhhccchHHHHHHhhcccccchhHHHHhcChhHHHHHHHH
Confidence 899999999999999999999 5555555555555555444333 44444444444333333332222221 1111110
Q ss_pred hh----cC-ccHHHHHHHHHHhcccCCCcEEEEEeCCCHHHHHHHHHHHhccccCC-C----CCCCCCcccccccc-cce
Q 004577 243 ME----KG-INLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKG-P----QIKPQFTVEGTIWK-ACK 311 (744)
Q Consensus 243 ~~----~~-~~~~~~l~~f~~~~y~~~~~~lvi~G~~~~~~l~~lv~~~f~~i~~~-~----~~~~~~~~~~~~~~-~~~ 311 (744)
.. +- .-..+.|.+-+++.+..+|+.+++.|+.+ ++.+.+++-|..+... . .+.+.......... ..+
T Consensus 706 ~~~~~~~~~~ei~~kL~~l~~~i~~~~n~~i~i~~~~~--~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (978)
T COG1026 706 SSNFEENFEKEIADKLQALRKKIFQTNNLRIAIIGDID--KILDLLENPLLKFLEHLLPGFELPTPPKNPHLDLISSLSE 783 (978)
T ss_pred HHhhcccccHHHHHHHHHHHHHHhhcCceEEEEecChh--hhHHHHHHHhhhhhcccCcccccCCCCCCcchhhhccccc
Confidence 00 00 13456788889999999999888888654 4555555555444421 1 11111000001111 222
Q ss_pred EEEEeecccccEEEEEEEcCC-CchhhhcchHHHHHHHhcCCCCchHHHHHHhcCCcceeecccCCCcCCccccccEEEE
Q 004577 312 LFRLEAVKDVHILDLTWTLPC-LHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVM 390 (744)
Q Consensus 312 ~~~~~~~~~~~~l~l~~~~~~-~~~~~~~~~~~~l~~lLg~~~~~~L~~~Lr~~gl~y~~~~~~~~~~~~~~~~~g~f~i 390 (744)
...+. .+.+...++|++-. ..++.+..++.+++++|+. +-|+..+|.+|.||+.++..... .|.|.+
T Consensus 784 ~~ii~--~p~a~~~l~fs~~~~~y~hpd~~~l~vls~~L~~---~~lw~~IR~~GGAYGa~as~~~~-------~G~f~f 851 (978)
T COG1026 784 ATIIP--SPVAYNALAFSIGGLPYTHPDYAALQVLSEYLGS---GYLWNKIREKGGAYGASASIDAN-------RGVFSF 851 (978)
T ss_pred eEEec--cHHHHHHHhhhccCCCCCCccchHHHHHHHHhcc---chhHHHHHhhccccccccccccC-------CCeEEE
Confidence 22222 12234445555433 2344567899999999995 78999999999999998877642 358888
Q ss_pred EEEeCchhhhcHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhcccccccCCCcHHHH-HHHHHhcCCCCCcccccccc
Q 004577 391 SIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYA-AELAGNLLIYPAEHVIYGEY 469 (744)
Q Consensus 391 ~~~~~~~g~~~~~~v~~~i~~~l~~l~~~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~l~~~~ 469 (744)
..--.| ++-+..++..+.++.|....+++.++++++--.......-. +|.... ......+....++.--....
T Consensus 852 ~sYRDP----n~~kt~~v~~~~v~~l~s~~~~~~d~~~~ilg~i~~~d~p~--sp~~~~~~s~~~~~sg~~~~~~qa~re 925 (978)
T COG1026 852 ASYRDP----NILKTYKVFRKSVKDLASGNFDERDLEEAILGIISTLDTPE--SPASEGSKSFYRDLSGLTDEERQAFRE 925 (978)
T ss_pred EecCCC----cHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhccccccc--CCcceehhhHHHHHhcCCHHHHHHHHH
Confidence 877766 89999999999999998889999999999765544443221 222111 11111222223322222345
Q ss_pred ccccCCHHHHHHHHhc-cC---ccceEEEEEe
Q 004577 470 MYEVWDEEMIKHLLGF-FM---PENMRIDVVS 497 (744)
Q Consensus 470 ~i~~vt~~~i~~~~~~-l~---~~n~~i~i~~ 497 (744)
.+-++|++||.+++++ +. .++..+++.+
T Consensus 926 ~~l~vt~~di~~~~~~yl~~~~~e~~i~~~~~ 957 (978)
T COG1026 926 RLLDVTKEDIKEVMDKYLLNFSSENSIAVFAG 957 (978)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccceEEEEec
Confidence 6779999999999996 55 3445444444
No 17
>PTZ00432 falcilysin; Provisional
Probab=99.28 E-value=2.2e-09 Score=129.57 Aligned_cols=378 Identities=9% Similarity=-0.012 Sum_probs=229.4
Q ss_pred eEEEEEEecCCCCCCCCCCCCchHHHHHhc-ccCccCCCChhHHHHHHHhcCCcccee----eC------------CCee
Q 004577 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHML-FMGSTEFPDENEYDSYLSKHGGSSNAY----TE------------TEHT 160 (744)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~GlAhllehml-f~Gs~~~~~~~~~~~~l~~~g~~~na~----t~------------~d~t 160 (744)
.+.+.+.+......+ ...+ ...++..++ -.||++++. .++...+..+-|.+++. ++ ....
T Consensus 681 i~y~~~~fdl~~l~~-e~~~-yl~L~~~~l~~~gT~~~s~-~el~~~i~~~tGg~~~~~~~~~~~~~~~~~~~~~~~~~~ 757 (1119)
T PTZ00432 681 ILYLDFAFSLDSLTV-DELK-YLNLFKALLKENGTDKLSS-EEFTYKREKNLGGLSASTAFYSETNNLTYDDPYNGVGYL 757 (1119)
T ss_pred eEEEEEEecCCCCCH-HHHh-hHHHHHHHHHhcCCCCCCH-HHHHHHHHHhCCCeEEEEEEeccccccccCcccccceEE
Confidence 999999999887543 2333 444444444 489999998 58999999875555443 22 2245
Q ss_pred EEEEEeChhhHHHHHHHHHHhhhCCCCChHH-HHHHHHHHHHHHHhhcC-ChHHHHHHHHHhhCCCCCCCCCCCc-C--C
Q 004577 161 CYHFEIKREFLKGALMRFSQFFISPLMKVEA-MEREVLAVDSEFNQALQ-NDACRLQQLQCHTSQLGHAFNKFFW-G--N 235 (744)
Q Consensus 161 ~~~~~~~~~~l~~~l~~l~~~~~~P~f~~~~-~~~e~~~v~~e~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~-G--~ 235 (744)
.+.+.+..++++.+++++.+++.++.|+... +...++...+.+..... +....+...+.+-+... .+....+ | .
T Consensus 758 ~v~~k~l~~~~~~~~~l~~eil~~~~f~d~~rl~~il~~~~~~~~~~~~~~Gh~~A~~~~~s~~S~~-~~~~e~~~G~~~ 836 (1119)
T PTZ00432 758 NVRAKVLKHKVNEMVDIVLEALKDADFSNSKKGVEILKRKINGMKTVFSSKGHKFALKRMKSKFSVS-DYADELVNGYSQ 836 (1119)
T ss_pred EEEEEEhhhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCHH-HHHHHHhcCHHH
Confidence 6667789999999999999999999998765 65566666666665544 33333332222211111 1111111 1 2
Q ss_pred hhhhhhhh-----hcCccHHHHHHHHHHhcccCCCcEEEEEeCCC-HHHHHHHHHHHhccccCC----C--CCCCCCccc
Q 004577 236 KKSLIGAM-----EKGINLQEQIMKLYMNYYQGGLMKLVVIGGEP-LDTLQSWVVELFANVRKG----P--QIKPQFTVE 303 (744)
Q Consensus 236 ~~~l~~~~-----~~~~~~~~~l~~f~~~~y~~~~~~lvi~G~~~-~~~l~~lv~~~f~~i~~~----~--~~~~~~~~~ 303 (744)
..-|+.-. .+..-..+.|.+.+++.++.++|.+.|+|+.+ .+.+.+.+...+..++.. . .....+...
T Consensus 837 ~~fl~~l~~~~~e~~~~~v~~~L~~i~~~i~~~~~l~~~vt~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 916 (1119)
T PTZ00432 837 LLFLKETLVPLAEKDWSKVESKLNEIRNKLLSMKNLTVNVTGDSELLDSLLDDSTTFLKKLSSTFKENDNKSSDKVWVKE 916 (1119)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCcCCcEEEEEeCHHHHHHHHHHHHHHHHhcccccccccccccccccccc
Confidence 22222100 00012456688899999999999999999874 566667666667666421 1 111111000
Q ss_pred ------ccccccceEEEEeecccccEEEEEEEcCCCchhhhcchHHHHHHHhcCCCCchHHHHHHhcCCcceeecccCCC
Q 004577 304 ------GTIWKACKLFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDE 377 (744)
Q Consensus 304 ------~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~l~~lLg~~~~~~L~~~Lr~~gl~y~~~~~~~~~ 377 (744)
.+.......+ +.|. ....+..+.+. ....+....++.|++.+|.. +-|+..+|.+|.||+.++....
T Consensus 917 ~~~~~~~~~~~~~e~~-~~p~-~V~yv~~~~~~-~~~~~~~~~~l~Vl~~~L~~---~yLw~~IR~~GGAYG~~~~~~~- 989 (1119)
T PTZ00432 917 VLDKKLMESVDKNEFI-VLPT-RVNFVGMGGKL-FDKSDKVDGSFQVIVHYLKN---SYLWKTVRMSLGAYGVFADLLY- 989 (1119)
T ss_pred cccccccCCcccceEE-EccC-ceeEEEEeccc-ccCCCccCHHHHHHHHHHcc---ccchHHHcccCCccccCCccCC-
Confidence 0000112222 2221 22333443222 22233356799999999984 7899999999999999865532
Q ss_pred cCCccccccEEEEEEEeCchhhhcHHHHHHHHHHHHHHHHh--cCCchhHHHHHHHHhhcccccccCCCcHHHH-HHHHH
Q 004577 378 GMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQ--VSPQKWIFKELQDIGNMEFRFAEEQPQDDYA-AELAG 454 (744)
Q Consensus 378 ~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~l~~--~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~-~~l~~ 454 (744)
.|.|.+..-=+| ++.+.+++..+..+.|++ ..++++++++++--....+.. ..+|.... ..+..
T Consensus 990 -------~G~~~f~SYRDP----n~~~Tl~~f~~~~~~l~~~~~~~~~~~l~~~iig~~~~~D~--p~~p~~~g~~~~~~ 1056 (1119)
T PTZ00432 990 -------TGHVIFMSYADP----NFEKTLEVYKEVASALREAAETLTDKDLLRYKIGKISNIDK--PLHVDELSKLALLR 1056 (1119)
T ss_pred -------CCeEEEEEecCC----CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCC--CCChHHHHHHHHHH
Confidence 237766666556 888899988888888888 569999999997665554432 12333332 22323
Q ss_pred hcCCCCCccccccccccccCCHHHHHHHHhccC--ccceEEEEEeCC
Q 004577 455 NLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFM--PENMRIDVVSKS 499 (744)
Q Consensus 455 ~~~~~~~~~~l~~~~~i~~vt~~~i~~~~~~l~--~~n~~i~i~~~~ 499 (744)
.+.....+........+-++|++||+++++.+. .+...++++|++
T Consensus 1057 ~l~g~t~e~rq~~R~~il~~t~edi~~~a~~~~~~~~~~~~~v~g~~ 1103 (1119)
T PTZ00432 1057 IIRNESDEDRQKFRKDILETTKEDFYRLADLMEKSKEWEKVIAVVNS 1103 (1119)
T ss_pred HHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCeEEEEECH
Confidence 334444445455566677899999999999843 233455566653
No 18
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.4e-07 Score=99.37 Aligned_cols=380 Identities=10% Similarity=0.037 Sum_probs=221.1
Q ss_pred eEEEEEEecCCCCCCCCCCCCchHHHHHhcccCccCCCChhHHHHHHHhcCCcc--ceeeC--CCee------EEEEEeC
Q 004577 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSS--NAYTE--TEHT------CYHFEIK 167 (744)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~GlAhllehmlf~Gs~~~~~~~~~~~~l~~~g~~~--na~t~--~d~t------~~~~~~~ 167 (744)
.+.+++.+..|++-+. -.|=+.-|++.++-+||...+- .++.+.+..+-|-+ ...+. .+.+ .|...+.
T Consensus 582 i~Y~r~~~~l~~~p~e-L~PylPlfc~sll~lGt~~lsf-~el~qqI~rkTGGiS~~p~~~s~~~~d~p~~~i~~~~~~l 659 (998)
T KOG2019|consen 582 ITYTRVVFDLNSLPEE-LLPYLPLFCQSLLNLGTGDLSF-VELEQQIGRKTGGISVSPLVSSDDGMDEPELGIVFSGSML 659 (998)
T ss_pred eEEEEEeeccccCcHH-hhcchHHHHHHHHhcCCCcccH-HHHHHHhhhhcCceeecceeccCCCCCccceeEEechhhh
Confidence 9999999999985332 3578899999999999998876 57888888764433 32222 2222 2222345
Q ss_pred hhhHHHHHHHHHHhhhCCCCChHH-HHHHHHHHHHHHHhhcCChHHHHHHHHHhhCCCCCCCCCCCcCChhhhhh-----
Q 004577 168 REFLKGALMRFSQFFISPLMKVEA-MEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIG----- 241 (744)
Q Consensus 168 ~~~l~~~l~~l~~~~~~P~f~~~~-~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~----- 241 (744)
..+.+.+++++..+|.++.|...+ |...+....+++.....+....+..........-...-....|-++.|+=
T Consensus 660 ~rn~~dlfel~n~il~e~~f~n~dkfkvlvk~s~s~~~n~i~dsGH~~A~~rs~a~l~~ag~i~EqlgGl~ql~fl~~L~ 739 (998)
T KOG2019|consen 660 DRNADDLFELWNKILQETCFTNQDKFKVLVKQSASRMTNGIADSGHGFAAARSAAMLTPAGWISEQLGGLSQLEFLHRLE 739 (998)
T ss_pred cCChhHHHHHHHHHhcccCcccHHHHHHHHHHHHHHhhccCCcccchhHhhhhhcccCcccchHhHhcchHHHHHHHHHH
Confidence 667999999999999999998554 66666666777776655443332222222222111111222333343331
Q ss_pred -hhhc-CccHHHHHHHHHHhcccCCCcEEEEEeC-CCHHHHHHHHHHHhccccCCCCCCCCCcc-cccccccceEEEEee
Q 004577 242 -AMEK-GINLQEQIMKLYMNYYQGGLMKLVVIGG-EPLDTLQSWVVELFANVRKGPQIKPQFTV-EGTIWKACKLFRLEA 317 (744)
Q Consensus 242 -~~~~-~~~~~~~l~~f~~~~y~~~~~~lvi~G~-~~~~~l~~lv~~~f~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 317 (744)
..++ -.-..+.|-+..+.....++|.+.|..+ ..+..+++.|++++..+|...+.....+. +.-+.....+.++.|
T Consensus 740 ~~~d~d~~~i~~kL~eIrk~ll~~ng~~~~itAd~~q~~~vEkav~kFl~~lp~e~p~g~~st~d~r~p~~~~~i~~~~P 819 (998)
T KOG2019|consen 740 EKVDNDWEPIVSKLTEIRKSLLNTNGMIVNITADPKQLTNVEKAVEKFLDSLPRENPSGSKSTWDARLPLRSEAIRVVIP 819 (998)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEecCcccchhHHHHHHHHHHhccccCCCCCccCccccCCCCceeEEEecc
Confidence 0000 0012344555555556789998888764 66888999999999998853322211111 111111222222233
Q ss_pred cccccEEEEEE-EcCCCchhhhcchHHHHHHHhcCCCCchHHHHHHhcCCcceeecccCCCcCCccccccEEEEEEEeCc
Q 004577 318 VKDVHILDLTW-TLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTD 396 (744)
Q Consensus 318 ~~~~~~l~l~~-~~~~~~~~~~~~~~~~l~~lLg~~~~~~L~~~Lr~~gl~y~~~~~~~~~~~~~~~~~g~f~i~~~~~~ 396 (744)
.-+...+.-+. ..|. .+.+-.++.+|+.+|.+ .-|+.++|++|.||+-++.++. ..|.|.++--=+|
T Consensus 820 ~fqvnyvgka~~~vpy--t~~d~asl~vlS~~lt~---k~Lh~evRekGGAYGgg~s~~s-------h~GvfSf~SYRDp 887 (998)
T KOG2019|consen 820 TFQVNYVGKAGLGVPY--THPDGASLQVLSKLLTN---KWLHDEVREKGGAYGGGCSYSS-------HSGVFSFYSYRDP 887 (998)
T ss_pred ccchhhhhhhcccccC--CCCCCcHHHHHHHHHHH---HHHHHHHHHhcCccCCcccccc-------ccceEEEEeccCC
Confidence 11111111111 1122 22345789999999986 6788999999999998876654 3458888776655
Q ss_pred hhhhcHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhcccccccCCCcHHHHHHHHHhcCCCCCccccccccccccCCH
Q 004577 397 SGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDE 476 (744)
Q Consensus 397 ~g~~~~~~v~~~i~~~l~~l~~~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~i~~vt~ 476 (744)
+.-+.++.....-+-++...++++.+++||--.......-. .|. +..+...|.....+.--.....+-+++.
T Consensus 888 ----n~lktL~~f~~tgd~~~~~~~~~~dldeAkl~~f~~VDap~--~P~--~kG~~~fl~gvtDemkQarREqll~vSl 959 (998)
T KOG2019|consen 888 ----NPLKTLDIFDGTGDFLRGLDVDQQDLDEAKLGTFGDVDAPQ--LPD--AKGLLRFLLGVTDEMKQARREQLLAVSL 959 (998)
T ss_pred ----chhhHHHhhcchhhhhhcCCccccchhhhhhhhcccccCCc--CCc--ccchHHHHhcCCHHHHHHHHHHHHhhhH
Confidence 67777777777777787778999999999865433332111 111 1112222222111111111334667899
Q ss_pred HHHHHHHhc-cC-c-cceEEEEEeCC
Q 004577 477 EMIKHLLGF-FM-P-ENMRIDVVSKS 499 (744)
Q Consensus 477 ~~i~~~~~~-l~-~-~n~~i~i~~~~ 499 (744)
.++.+++++ +. . .-..+++.+|+
T Consensus 960 ~d~~~vae~yl~~~~~~~~vav~g~E 985 (998)
T KOG2019|consen 960 KDFKAVAEAYLGVGDKGVAVAVAGPE 985 (998)
T ss_pred HHHHHHHHHHhccCCcceEEEeeCcc
Confidence 999999987 33 2 23445555554
No 19
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=4.5e-06 Score=94.61 Aligned_cols=372 Identities=10% Similarity=0.000 Sum_probs=220.9
Q ss_pred eEEEEEEecCCCCCCCCCCCCchHHHHHhcccCccCCCChhHHHHHHHhcCCccceeeCCCeeEEEEEeChhhHHHHHHH
Q 004577 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMR 177 (744)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~GlAhllehmlf~Gs~~~~~~~~~~~~l~~~g~~~na~t~~d~t~~~~~~~~~~l~~~l~~ 177 (744)
++.+.+.++.-.....+...=+..|+..+++....++. .-...-|.+++...+.+.-.+.+++.++.+..++..
T Consensus 526 K~~v~~~irsp~~~~s~r~~Vl~~l~~~la~dal~~~~------y~A~~aG~sfs~~~~~~Gl~ltisGft~~lp~L~~~ 599 (937)
T COG1025 526 KASVSLAIRSPHASRSPRNQVLTELYAYLANDALDKLS------YQASLAGLSFSLAANSNGLDLTISGFTQRLPQLLRA 599 (937)
T ss_pred cceeEEEEeCcccccCHHHHHHHHHHHHHHHHHHHhhh------hHHHhcceEEEeecCCCceEEEeeccccchHHHHHH
Confidence 77777777654443332222233334444432222111 112335667777777788888899999999999999
Q ss_pred HHHhhhCCCCChHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHhhCCCCCCCCCCCcCChhhhhhhhhcCccHHHHHHHH
Q 004577 178 FSQFFISPLMKVEAMEREVLAVDSEFNQAL-QNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKL 256 (744)
Q Consensus 178 l~~~~~~P~f~~~~~~~e~~~v~~e~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~f 256 (744)
|.+.+..-.++++.|...|..+.++++... ..|..+..+.+..++.+.+. . ..--.+.|.. ++.+++..|
T Consensus 600 ~l~~l~~~~~~~~~f~~~K~~~~~~~~~a~~~~p~~~~~~~l~~l~~~~~~-s--~~e~~~~l~~------v~~~e~~~f 670 (937)
T COG1025 600 FLDGLFSLPVDEDRFEQAKSQLSEELKNALTGKPYRQALDGLTGLLQVPYW-S--REERRNALES------VSVEEFAAF 670 (937)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHhhhhhCCCCc-C--HHHHHHHhhh------ccHHHHHHH
Confidence 999999999999999999999999998765 66888888888777765443 1 1112344445 899999999
Q ss_pred HHhcccCCCcEEEEEeCCCHHHHHHHHHHHhccccCCCCCCCCCccccccc-ccceEEEE--eecccccEEEEEEEcCCC
Q 004577 257 YMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIW-KACKLFRL--EAVKDVHILDLTWTLPCL 333 (744)
Q Consensus 257 ~~~~y~~~~~~lvi~G~~~~~~l~~lv~~~f~~i~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~l~l~~~~~~~ 333 (744)
-...+.+....+.|.|+++.+++.++++.....+++..... ...+.-.. ..+..... ....+.+...+.++.. .
T Consensus 671 ~~~l~~~~~lE~lv~Gn~~~~da~~l~~~~~~~l~~~~s~~--~~~~~~~~~~~~~~~~e~~~~~~~~an~~i~~~~~-~ 747 (937)
T COG1025 671 RDTLLNGVHLEMLVLGNLTEADATNLAETLQKKLPAIGSTW--YRNPSVYLLKGGTRIFETVGGESDSANAAILYPQQ-Y 747 (937)
T ss_pred HHHhhhccceeeeeeccchHHHHHHHHHHHHhhhcccCCcc--cCCCceeccCCCeeEeeeccCCcccccceeEeccc-c
Confidence 99999999999999999999999999986666666543311 10010111 12222222 2222222223333222 2
Q ss_pred chhhhcchHHHHHHHhcCCCCchHHHHHH-hcCCcceeecccCCCcCCccccccEEEEEEEeCchhhhcHHHHHHHHHHH
Q 004577 334 HQEYLKKSEDYLAHLLGHEGRGSLHSFLK-GRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQY 412 (744)
Q Consensus 334 ~~~~~~~~~~~l~~lLg~~~~~~L~~~Lr-~~gl~y~~~~~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~ 412 (744)
. +++ ...+++|+++-..--.|..|| ++.|.|-|.++........ -..|.++....+.+-..+.++..++.
T Consensus 748 ~-~~~---~~a~s~Ll~~l~~~~ff~~LRTkeQLGY~Vfs~~~~v~~~~-----gi~f~vqS~~~~p~~L~~r~~~F~~~ 818 (937)
T COG1025 748 D-EIK---SSALSSLLGQLIHPWFFDQLRTKEQLGYAVFSGPREVGRTP-----GIGFLVQSNSKSPSYLLERINAFLET 818 (937)
T ss_pred c-hHH---HHHHHHHHHHHHhHHhHHHhhhhhhcceEEEecceeecCcc-----ceEEEEeCCCCChHHHHHHHHHHHHH
Confidence 2 222 234455555444477889999 9999999998876543211 22344444332222333334444443
Q ss_pred HHHHHhcCCchhHHHHHHHHhhcccccccCCCcHHHHHHHHHhc--CCCCCccccccccccccCCHHHHHHHHhc-cCcc
Q 004577 413 IKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNL--LIYPAEHVIYGEYMYEVWDEEMIKHLLGF-FMPE 489 (744)
Q Consensus 413 l~~l~~~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~l~~~~~i~~vt~~~i~~~~~~-l~~~ 489 (744)
..... .+.++++|+..|..+.+.+.... .+....+..+-... ..++.++--.....+..+|.+++..+... +...
T Consensus 819 ~~~~l-~~ms~e~Fe~~k~alin~il~~~-~nl~e~a~r~~~~~~~g~~~Fd~~ek~i~~vk~LT~~~l~~f~~~~l~~~ 896 (937)
T COG1025 819 AEPEL-REMSEEDFEQIKKALINQILQPP-QNLAEEASRLWKAFGRGNLDFDHREKKIEAVKTLTKQKLLDFFENALSYE 896 (937)
T ss_pred HHHHH-HhCCHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHHHhccCCCCcCcHHHHHHHHHhcCHHHHHHHHHHhhccc
Confidence 33322 35788999999988877775433 23333333332111 11111111111234678899998887765 5433
Q ss_pred ---ceEEEEEeC
Q 004577 490 ---NMRIDVVSK 498 (744)
Q Consensus 490 ---n~~i~i~~~ 498 (744)
...+.+.|+
T Consensus 897 ~g~~l~~~i~g~ 908 (937)
T COG1025 897 QGSKLLSHIRGQ 908 (937)
T ss_pred ccceeeeeeecc
Confidence 334445554
No 20
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=98.79 E-value=1.6e-06 Score=95.96 Aligned_cols=360 Identities=16% Similarity=0.128 Sum_probs=206.3
Q ss_pred cccEEEEEEEcCCC-chhhhcchHHHHHHHhcCCCCc----hHHHHHHhcCCcceeecccCCCcCCccccccEEEEEEEe
Q 004577 320 DVHILDLTWTLPCL-HQEYLKKSEDYLAHLLGHEGRG----SLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHL 394 (744)
Q Consensus 320 ~~~~l~l~~~~~~~-~~~~~~~~~~~l~~lLg~~~~~----~L~~~Lr~~gl~y~~~~~~~~~~~~~~~~~g~f~i~~~~ 394 (744)
+...+.+.+..-.. ......-..+++.+++..+..+ .+...+-..|.....+.+... . .+.+. +
T Consensus 37 ~~vs~~~~v~~Gs~~e~~~~~G~AH~lehm~fkgt~~~~~~~i~~~~~~~G~~~na~ts~d~-----t----~y~~~--~ 105 (438)
T COG0612 37 PTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLPSAELAEAFEKLGGQLNAFTSFDY-----T----VYYLS--V 105 (438)
T ss_pred CEEEEEEEEeecccCCCCCcccHHHHHHHHHccCCCCCChHHHHHHHHHhcCeeeccccchh-----h----hhhhh--h
Confidence 44556666663332 2222334668889999654333 466777777777554443332 1 23333 2
Q ss_pred CchhhhcHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhcccccccCCCcHHHHHHH-HHhcCCCCC-cc-cccccccc
Q 004577 395 TDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAEL-AGNLLIYPA-EH-VIYGEYMY 471 (744)
Q Consensus 395 ~~~g~~~~~~v~~~i~~~l~~l~~~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~-~~-~l~~~~~i 471 (744)
.+ ++.+++++.+.+.+..- -++++++++-|..+..+++..... |..++... ...+....| .. .+.....|
T Consensus 106 l~---~~~~~~l~llad~l~~p---~f~~~~~e~Ek~vil~ei~~~~d~-p~~~~~~~l~~~~~~~~p~~~~~~G~~e~I 178 (438)
T COG0612 106 LP---DNLDKALDLLADILLNP---TFDEEEVEREKGVILEEIRMRQDD-PDDLAFERLLEALYGNHPLGRPILGTEESI 178 (438)
T ss_pred ch---hhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHHHHhhccC-chHHHHHHHHHHhhccCCCCCCCCCCHHHH
Confidence 33 58888888877666543 489999999999888887765543 55454433 333333222 22 33336779
Q ss_pred ccCCHHHHHHHHhc-cCccceEEEEEeCCCCCCCCccccceeeceeeeecCChHHHHhhcCCCCCCCCccCCCCCCCCCC
Q 004577 472 EVWDEEMIKHLLGF-FMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPT 550 (744)
Q Consensus 472 ~~vt~~~i~~~~~~-l~~~n~~i~i~~~~~~~~~~~~~e~~~~~~y~~~~i~~~~l~~~~~~~~~~~~l~lP~~N~~ip~ 550 (744)
.++|++++.++.++ +.|+||.|+++|.-. . .+. .++-++.+..|+... +....|...+..|.
T Consensus 179 ~~it~~dl~~f~~k~Y~p~n~~l~vvGdi~--~--~~v----------~~~~~~~f~~~~~~~---~~~~~~~~~~~~~~ 241 (438)
T COG0612 179 EAITREDLKDFYQKWYQPDNMVLVVVGDVD--A--EEV----------VELIEKYFGDLPGAA---PPPKIPPEPPLGPE 241 (438)
T ss_pred HhCCHHHHHHHHHHhcCcCceEEEEecCCC--H--HHH----------HHHHHHHHccCCccC---CCCCCCCccccCCC
Confidence 99999999999998 899999999999621 0 000 111112233333200 00000000011110
Q ss_pred CccccccCCCCCCCCCCCCeEEeecCCeeEEeecCCccCCceeeEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 004577 551 DFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIY 630 (744)
Q Consensus 551 ~~~l~~~~~~~~~~~~~~P~~~~~~~~~~vw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~~~~l~~~ll~~~l~e~~y 630 (744)
+....... . .-.+..+.+.+-+..+..... .......++..++.......++
T Consensus 242 ------------------~~~~~~~~-------~--~~~~~~~~~~~g~~~~~~~~~-~~~~~~~l~~~llgg~~~SrLf 293 (438)
T COG0612 242 ------------------RVVRVNDP-------E--QPDLEQAWLALGYPGPDYDSP-DDYAALLLLNGLLGGGFSSRLF 293 (438)
T ss_pred ------------------ceEEecCC-------C--CchhhhhhhhccccCcCcCcc-hhhHHHHHHHHHhCCCcchHHH
Confidence 00000000 0 000112222333333222221 3444555555555543333222
Q ss_pred --hhhhcceEEEEEEe-----CceeEEEEEecC----CCHHHHHHHHHHHHccCC---CCHHHHHHHHHHHHHHHHcccc
Q 004577 631 --QASVAKLETSVSIF-----SDKLELKVYGFN----DKLPVLLSKILAIAKSFL---PSDDRFKVIKEDVVRTLKNTNM 696 (744)
Q Consensus 631 --~a~~agl~~~~~~~-----~~gi~l~~~G~~----~kl~~ll~~i~~~l~~~~---~~~~~f~~~k~~~~~~~~n~~~ 696 (744)
..+..|+.|++++. ..|+.....+.. ++....+..+++.+.... ++++.++..|..+...+-....
T Consensus 294 ~~~re~~glay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~k~~~~~~~~~~~~ 373 (438)
T COG0612 294 QELREKRGLAYSVSSFSDFLSDSGLFSIYAGTAPENPEKTAELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLLLSLD 373 (438)
T ss_pred HHHHHhcCceeeeccccccccccCCceEEEEecCCChhhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhccC
Confidence 23456888877731 234433333332 456666666666665554 7899999998888888888776
Q ss_pred ChhHHHHHHHHHhhc-CCCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 004577 697 KPLSHSSYLRLQVLC-QSFYDVDEKLSILHGLSLADLMAFIPELRSQ 742 (744)
Q Consensus 697 ~p~~~a~~~~~~ll~-~~~~~~~~~~~~l~~it~~d~~~~~~~~~~~ 742 (744)
.|...+......++. ...-+..+..+.|+.+|.+|++.++++++..
T Consensus 374 s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~~~~ 420 (438)
T COG0612 374 SPSSIAELLGQYLLLGGSLITLEELLERIEAVTLEDVNAVAKKLLAP 420 (438)
T ss_pred CHHHHHHHHHHHHHhcCCccCHHHHHHHHHhcCHHHHHHHHHHhcCC
Confidence 798999888877776 4566889999999999999999999998763
No 21
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=7.3e-06 Score=94.56 Aligned_cols=359 Identities=11% Similarity=0.000 Sum_probs=218.2
Q ss_pred eEEEEEEecCCCCCCCCCCCCchHHHHHhcccCccCCCChhHHHHHHHhcCCccceeeCCCeeEEEEEeChhhHHHHHHH
Q 004577 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMR 177 (744)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~GlAhllehmlf~Gs~~~~~~~~~~~~l~~~g~~~na~t~~d~t~~~~~~~~~~l~~~l~~ 177 (744)
++.+.+.+..--....+...+++++...++.--. .+..-.....|.++....+...-...+.+-++.+..++..
T Consensus 533 ka~~~~~~~~p~~~~~~~~~~l~~l~~~~l~d~l------~E~~Y~A~~aGl~~~~~~s~~G~~~~v~Gfnekl~~ll~~ 606 (974)
T KOG0959|consen 533 KAYTKFDFICPGATQSPLNSVLSTLYVRLLKDQL------NEYLYPALLAGLTYSLSSSSKGVELRVSGFNEKLPLLLEK 606 (974)
T ss_pred hhheeeeecCcccccCHHHHHHHHHHHHHHHHHH------hHHHHHHHhccceEEeeecCCceEEEEeccCcccHHHHHH
Confidence 6677777755444444456677777776664211 1222334456777888888888888888999999999999
Q ss_pred HHHhhhCCCCChHHHHHHHHHHHHHHHh-hcCChHHHHHHHHHhhCCCCCCCCCCCcCChhhhhhhhhcCccHHHHHHHH
Q 004577 178 FSQFFISPLMKVEAMEREVLAVDSEFNQ-ALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKL 256 (744)
Q Consensus 178 l~~~~~~P~f~~~~~~~e~~~v~~e~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~f 256 (744)
+.+++.+-..+++.|+..++.+..+++. ...+|..+..+.... +...+.|... --.+.+.. ++.+++..|
T Consensus 607 ~~~~~~~f~~~~~rf~iike~~~~~~~n~~~~~p~~~a~~~~~l-ll~~~~W~~~--e~~~al~~------~~le~~~~F 677 (974)
T KOG0959|consen 607 VVQMMANFELDEDRFEIIKELLKRELRNHAFDNPYQLANDYLLL-LLEESIWSKE--ELLEALDD------VTLEDLESF 677 (974)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHH-HhhccccchH--HHHHHhhc------ccHHHHHHH
Confidence 9999999899999999999999999998 456666665555544 4444443322 12233334 899999999
Q ss_pred HHhcccCCCcEEEEEeCCCHHHHHHHHHHHhccccCCC-CCCCCCc---ccccc--cccce-EEEEee---cccccEEEE
Q 004577 257 YMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGP-QIKPQFT---VEGTI--WKACK-LFRLEA---VKDVHILDL 326 (744)
Q Consensus 257 ~~~~y~~~~~~lvi~G~~~~~~l~~lv~~~f~~i~~~~-~~~~~~~---~~~~~--~~~~~-~~~~~~---~~~~~~l~l 326 (744)
-..++++--|...|.||+..+++.++++..+..+.... ...+.+. .+... .+.+. .++... ..+.+.+.+
T Consensus 678 ~~~~~~~~~~e~~i~GN~te~~A~~l~~~v~d~l~~~~~~~~p~~~~~~~~~~~~~lp~G~~~~~~~~~n~~~~ns~i~~ 757 (974)
T KOG0959|consen 678 ISEFLQPFHLELLIHGNLTEKEALQLLKSVLDILKSAAPNSRPLFRSEHLPRREIQLPNGDYYFYRHLLNKTDDNSCIEV 757 (974)
T ss_pred HHHHhhhhheEEEEecCcchHHHHHHHHHHHhhhhccCCCCccccccccCcccceeccCCceEEEEcccccCCCCceEEE
Confidence 99999999999999999999999998766555551111 1111110 01011 11222 222221 234566777
Q ss_pred EEEcCCCchhhhcchHHHHHHHhcCCCCchHHHHHH-hcCCcceeecccCCCcCCccccccEEEEEEEeCchhhhcHHHH
Q 004577 327 TWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLK-GRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDI 405 (744)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~l~~lLg~~~~~~L~~~Lr-~~gl~y~~~~~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v 405 (744)
.+.+ ...+.+....+.++..++. ..+|..|| +..|.|-++++...... .. -+.|.++.+ .+...++.-
T Consensus 758 ~~Q~-~~~~~~~~~~~~L~~~li~----ep~Fd~LRTkeqLGYiv~~~~r~~~G-~~----~~~i~Vqs~-~~~~~le~r 826 (974)
T KOG0959|consen 758 YYQI-GVQDTRDNAVLGLLEQLIK----EPAFDQLRTKEQLGYIVSTGVRLNYG-TV----GLQITVQSE-KSVDYLEER 826 (974)
T ss_pred EEEc-ccchhHHHHHHHHHHHHhc----cchHHhhhhHHhhCeEeeeeeeeecC-cc----eeEEEEccC-CCchHHHHH
Confidence 7775 4334445556677777777 67899999 77777766665543221 11 334444444 455556655
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHhhcccccccCC---CcHHHHHHHHHhcCCCCCccccccccccccCCHHHHHHH
Q 004577 406 IGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQ---PQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHL 482 (744)
Q Consensus 406 ~~~i~~~l~~l~~~~~~~~~l~~~k~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~l~~~~~i~~vt~~~i~~~ 482 (744)
+..+++.+..... ..++++++.-+..+.......... ....+|..+... .|.....-.....+..++.+++-.+
T Consensus 827 Ie~fl~~~~~~i~-~m~~e~Fe~~~~~lI~~~~ek~~~l~~e~~~~w~ei~~~--~y~f~r~~~~v~~l~~i~k~~~i~~ 903 (974)
T KOG0959|consen 827 IESFLETFLEEIV-EMSDEEFEKHKSGLIASKLEKPKNLSEESSRYWDEIIIG--QYNFDRDEKEVEALKKITKEDVINF 903 (974)
T ss_pred HHHHHHHHHHHHH-hcchhhhhhhHHHHHHHHhhcCcchhHHHHHHHHHHHhh--hhcchhhHHHHHHHHhhhHHHHHHH
Confidence 5555555444332 245667777665554444322211 112344444432 2222111122234778999999888
Q ss_pred Hhc
Q 004577 483 LGF 485 (744)
Q Consensus 483 ~~~ 485 (744)
...
T Consensus 904 f~~ 906 (974)
T KOG0959|consen 904 FDE 906 (974)
T ss_pred HHh
Confidence 876
No 22
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=98.53 E-value=3.4e-07 Score=92.30 Aligned_cols=169 Identities=14% Similarity=0.142 Sum_probs=119.7
Q ss_pred CCCCCccccccCCCCCCCCCCCCeEEeecCCeeEEeecCCccCCceeeEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q 004577 547 FIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELN 626 (744)
Q Consensus 547 ~ip~~~~l~~~~~~~~~~~~~~P~~~~~~~~~~vw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~~~~l~~~ll~~~l~ 626 (744)
.||. +++.+.+.... ..|......+++.+++++-. . ++.+|+++.++....+.+...++.||+.++.+..+
T Consensus 53 ~LP~-L~~~Di~~~~~----~~~~~~~~~~~~~v~~~~~~--T--nGI~Y~~l~fdl~~l~~e~l~yl~Ll~~ll~~lgT 123 (248)
T PF08367_consen 53 TLPT-LSLSDIPREIE----KIPLEVEKLGGIPVLFHEQP--T--NGIVYVRLYFDLSDLPEEDLPYLPLLTDLLGELGT 123 (248)
T ss_dssp TS-----GGGS-SS----------EECCCTTCEEEEEE-------TTEEEEEEEEE-TTS-CCCHCCHHHHHHHCCCS-B
T ss_pred HHcc-ccHHhcCCCCC----CCCceeeecCCccEEEEEcC--C--CCeEEEEEEecCCCCCHHHHHhHHHHHHHHHhCCC
Confidence 3443 55554443322 25666666678899888743 3 68888898888888888999999999999987755
Q ss_pred H-Hhh-------hhhhcceEEEEEEeC---------ceeEEEEEecCCCHHHHHHHHHHHHccCCCC-HHHHHHHHHHHH
Q 004577 627 E-IIY-------QASVAKLETSVSIFS---------DKLELKVYGFNDKLPVLLSKILAIAKSFLPS-DDRFKVIKEDVV 688 (744)
Q Consensus 627 e-~~y-------~a~~agl~~~~~~~~---------~gi~l~~~G~~~kl~~ll~~i~~~l~~~~~~-~~~f~~~k~~~~ 688 (744)
+ +.| ...++|+++++.... .++.|+.+++++|++.+++++.+.|.+..|+ .+|+..+..+..
T Consensus 124 ~~~sy~el~~~i~~~tGGis~~~~~~~~~~~~~~~~~~l~is~k~L~~~~~~~~~ll~eil~~~~f~d~~rl~~ll~~~~ 203 (248)
T PF08367_consen 124 KNYSYEELSNEIDLYTGGISFSIEVYTDYDDDDKYRPYLVISAKCLDEKLDEAFELLSEILTETDFDDKERLKELLKELK 203 (248)
T ss_dssp SSS-HHHHHHHHHHHSSEEEEEEEEEEEECTECCCEEEEEEEEEEEGGGHHHHHHHHHHHHHCB-TT-HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCeEEEeeeccCCCCccceeEEEEEEEEeHhhhHHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Confidence 4 333 234678998886532 7799999999999999999999999999997 579999999999
Q ss_pred HHHHccccC-hhHHHHHHHHHhhcCCCCCHHHHHHH-hccCCH
Q 004577 689 RTLKNTNMK-PLSHSSYLRLQVLCQSFYDVDEKLSI-LHGLSL 729 (744)
Q Consensus 689 ~~~~n~~~~-p~~~a~~~~~~ll~~~~~~~~~~~~~-l~~it~ 729 (744)
..+++...+ ++..|+... ...++....+.+ +.+|++
T Consensus 204 s~~~~~i~~~Gh~~A~~ra-----~s~~s~~~~~~e~~~Gl~~ 241 (248)
T PF08367_consen 204 SDMESSIISSGHSYAMSRA-----SSYLSRSGALDELWSGLSQ 241 (248)
T ss_dssp HHHHHHHHH-HHHHHHHHC-----CCTT-HHHHHHHHHHSHHH
T ss_pred HHHHHhhhhhHHHHHHHHH-----HhcCCHHHHHHHHHcCHHH
Confidence 999998776 788777775 567788888877 577754
No 23
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M44 (clan ME). The active site residues for members of this family and family M16 occur in the motif HXXEHProtein. The type example is the vaccinia virus-type metalloendopeptidase G1 from vaccinia virus, it is a metalloendopeptidase expressed by many Poxviridae which appears to play a role in the maturation of viral proteins.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0019067 viral assembly, maturation, egress, and release
Probab=98.20 E-value=3.2e-05 Score=80.18 Aligned_cols=164 Identities=18% Similarity=0.249 Sum_probs=98.7
Q ss_pred cCCCCCCCCCCCCchHHHHHhcccCccCCCChhHHHHHHHhcCCccceeeCCCeeEEEEEeCh-hhHHHHHHHHHHhhhC
Q 004577 106 GMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKR-EFLKGALMRFSQFFIS 184 (744)
Q Consensus 106 ~~Gs~~dp~~~~GlAhllehmlf~Gs~~~~~~~~~~~~l~~~g~~~na~t~~d~t~~~~~~~~-~~l~~~l~~l~~~~~~ 184 (744)
+.|.-.|-.+..|+||+|||.+-+ | +-..|+ .||+|.+.+..|...... .....++.-+..+|+.
T Consensus 26 ~FGFe~DI~~iLGiAHLLEHILIs----F----D~~~F~------ANASTaRsYMSFWC~si~g~~~~DAvrtliSWFF~ 91 (590)
T PF03410_consen 26 NFGFENDIGEILGIAHLLEHILIS----F----DSSKFL------ANASTARSYMSFWCKSIRGRTYIDAVRTLISWFFD 91 (590)
T ss_pred ccccccchHHHHhHHHHHHHHeee----c----chHHhh------cccchhhhhhhhhhhhccCCChhHHHHHHHHHhhc
Confidence 578778878889999999999863 1 122222 489999999999986543 3344555555555543
Q ss_pred -C----CCChHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhCCCCCCCCCCCcCChhhhhhhhhcCccHHHHHHHHHHh
Q 004577 185 -P----LMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMN 259 (744)
Q Consensus 185 -P----~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~f~~~ 259 (744)
- .|+...++..+..+.+|+=- .+.....++.+. .+.+|.-|.. |-..-|.+-. ..+..|.+-.++
T Consensus 92 ~g~Lk~~F~~~~i~~hikELENEYYF--RnEvfHCmDvLt-fL~gGDLYNG---GRi~ML~~l~----~i~~mL~~RM~~ 161 (590)
T PF03410_consen 92 NGKLKDNFSRSKIKNHIKELENEYYF--RNEVFHCMDVLT-FLGGGDLYNG---GRIDMLNNLN----DIRNMLSNRMHR 161 (590)
T ss_pred CCcccccccHhHHHHHHHHHhhhhhh--hhhHHHHHHHHH-HhcCCcccCC---chHHHHhhhH----HHHHHHHHHHHh
Confidence 2 37777777777777777642 233333444443 3445555542 3333333200 233444444443
Q ss_pred cccCCCcEEEEEeCCCHHHHHHHHHHHhccccCCCCC
Q 004577 260 YYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQI 296 (744)
Q Consensus 260 ~y~~~~~~lvi~G~~~~~~l~~lv~~~f~~i~~~~~~ 296 (744)
- ...|.++.|- .++ +.+..++.+.||.+|..+..
T Consensus 162 I-~GpniVIFVk-~l~-~~~l~lL~~TFGtLP~cP~~ 195 (590)
T PF03410_consen 162 I-IGPNIVIFVK-ELN-PNILSLLSNTFGTLPSCPLT 195 (590)
T ss_pred h-cCCcEEEEEe-ccC-HHHHHHHHHhcCCCCCCccc
Confidence 3 4445554444 466 67788999999999987643
No 24
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=4.2e-05 Score=77.78 Aligned_cols=328 Identities=12% Similarity=0.067 Sum_probs=183.0
Q ss_pred hHHHHHHhcCCcceeecccCCCcCCccccccEEEEEEEeCchhhhcHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhc
Q 004577 356 SLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNM 435 (744)
Q Consensus 356 ~L~~~Lr~~gl~y~~~~~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~l~~~~~~~~~l~~~k~~~~~ 435 (744)
.+...|-+.|-.|+.+++-.. +...+.+.. +.++.+++.+-+.+. +-.++++++++++...+-
T Consensus 85 ei~~~LE~~GGn~~cqsSRet-----------m~Yaas~~~---~~v~sm~~lLadtV~---~P~~~d~ev~~~~~~v~~ 147 (472)
T KOG2067|consen 85 EILAELEKLGGNCDCQSSRET-----------MMYAASADS---DGVDSMVELLADTVL---NPKFTDQEVEEARRAVKY 147 (472)
T ss_pred HHHHHHHHhCCcccccccHhh-----------hHHHHHhhh---cccHHHHHHHHHHHh---cccccHHHHHHHHHhhhh
Confidence 466677788999988775443 222233334 456777776655544 345899999999876655
Q ss_pred ccccccCCCcHHHHHHHHHhcCC--CCCccccc-cccccccCCHHHHHHHHhc-cCccceEEEEEeCCCCCCCCccccce
Q 004577 436 EFRFAEEQPQDDYAAELAGNLLI--YPAEHVIY-GEYMYEVWDEEMIKHLLGF-FMPENMRIDVVSKSFAKSQDFHYEPW 511 (744)
Q Consensus 436 ~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~l~-~~~~i~~vt~~~i~~~~~~-l~~~n~~i~i~~~~~~~~~~~~~e~~ 511 (744)
+..-... +|.-+...+.....+ .....-+. -...++.++.+.+..++++ .+|++|++.-+|=+. +.-....+++
T Consensus 148 E~~el~~-~Pe~lL~e~iH~Aay~~ntlg~pl~cp~~~i~~I~~~~l~~yl~~~ytp~rmVlA~vGV~h-eelv~~~~~~ 225 (472)
T KOG2067|consen 148 EIEELWM-RPEPLLTEMIHSAAYSGNTLGLPLLCPEENIDKINREVLEEYLKYFYTPERMVLAGVGVEH-EELVEIAEKL 225 (472)
T ss_pred ecccccc-CchhhHHHHHHHHHhccCcccccccCChhhhhhhhHHHHHHHHHhcCChhheEeeecCCCH-HHHHHHHHHH
Confidence 4432111 233333333322111 11111111 1456889999999999998 899999988777543 1111122333
Q ss_pred eeceeeeecCChHHHHhhcCCCCCCCCccCCCCC----C------CCCCCccccccCCCCCCCCCCCCeEEeecCCeeE-
Q 004577 512 FGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQN----E------FIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRF- 580 (744)
Q Consensus 512 ~~~~y~~~~i~~~~l~~~~~~~~~~~~l~lP~~N----~------~ip~~~~l~~~~~~~~~~~~~~P~~~~~~~~~~v- 580 (744)
++ .|+.. .+|++. . .|++|+..... .|.+.+--=+.+.
T Consensus 226 ~~--------------~~~s~-------~~p~i~~~~aQYtGG~~~~~~d~~~~~~----------g~EltHv~lg~Eg~ 274 (472)
T KOG2067|consen 226 LG--------------DLPST-------KVPPIDESKAQYTGGELKIDTDAPQVTG----------GPELTHVVLGFEGC 274 (472)
T ss_pred hc--------------cCCcc-------CCCCcccchhhccccccccCCCCccccC----------ccceeeeeEeeccC
Confidence 32 22211 112111 1 12222211110 1111110001111
Q ss_pred -EeecCCccCCceeeEEEEEeccCC--CCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcceEEEEEEeCce-eEEEEEecC
Q 004577 581 -WYKLDNTFKLPRANTYFRINLKGG--YDNVKNCILTELFIHLLKDELNEIIYQASVAKLETSVSIFSDK-LELKVYGFN 656 (744)
Q Consensus 581 -w~~~d~~f~~Pk~~i~~~~~~~~~--~~~~~~~~~~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~~~g-i~l~~~G~~ 656 (744)
|-.+| | +|-+.+.+..-.... .-.|..-++.+||.++|++.-. .|. + ..|.-+.++.| +-|..+..-
T Consensus 275 ~~~deD--~-v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry~w--v~s--c--tAfnhsy~DtGlfgi~~s~~P 345 (472)
T KOG2067|consen 275 SWNDED--F-VALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRYHW--VYS--C--TAFNHSYSDTGLFGIYASAPP 345 (472)
T ss_pred CCCChh--H-HHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhhHH--HHH--h--hhhhccccCCceeEEeccCCH
Confidence 22221 1 122333322211111 1134456666666666654432 221 2 22334445666 578888888
Q ss_pred CCHHHHHHHHHHHHccCC--CCHHHHHHHHHHHHHHHHccccChhHHHHHHHHHhhc-CCCCCHHHHHHHhccCCHHHHH
Q 004577 657 DKLPVLLSKILAIAKSFL--PSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLC-QSFYDVDEKLSILHGLSLADLM 733 (744)
Q Consensus 657 ~kl~~ll~~i~~~l~~~~--~~~~~f~~~k~~~~~~~~n~~~~p~~~a~~~~~~ll~-~~~~~~~~~~~~l~~it~~d~~ 733 (744)
+..++.++.+...|.+.. ++++.++++|.|+...+-=....-...+.+.-+.+|. ...-.+++.+..|+++|.+|+.
T Consensus 346 ~~a~~aveli~~e~~~~~~~v~~~el~RAK~qlkS~LlMNLESR~V~~EDvGRQVL~~g~rk~p~e~~~~Ie~lt~~DI~ 425 (472)
T KOG2067|consen 346 QAANDAVELIAKEMINMAGGVTQEELERAKTQLKSMLLMNLESRPVAFEDVGRQVLTTGERKPPDEFIKKIEQLTPSDIS 425 (472)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccccchhHHHHhHHHHhccCcCCHHHHHHHHHhcCHHHHH
Confidence 999999999999998864 7899999999998887754444422455666666554 4566899999999999999999
Q ss_pred HHHHHHHHh
Q 004577 734 AFIPELRSQ 742 (744)
Q Consensus 734 ~~~~~~~~~ 742 (744)
.+.++++..
T Consensus 426 rva~kvlt~ 434 (472)
T KOG2067|consen 426 RVASKVLTG 434 (472)
T ss_pred HHHHHHhcC
Confidence 999998863
No 25
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=98.10 E-value=6e-05 Score=86.02 Aligned_cols=167 Identities=10% Similarity=-0.040 Sum_probs=130.0
Q ss_pred eecCCeeEEeecCCccCCceeeEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHH----hhhh--hhcceEEEEEEeCc
Q 004577 573 IDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEI----IYQA--SVAKLETSVSIFSD 646 (744)
Q Consensus 573 ~~~~~~~vw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~~~~l~~~ll~~~l~e~----~y~a--~~agl~~~~~~~~~ 646 (744)
...||++|++.+++ ..|.+.+.+.+.......+.....++.++..|+-.....+ .+.. +-.|-+++.+.+..
T Consensus 4 tL~NGLrVllv~~p--~~p~vav~l~v~aGS~~Ep~~~~GLAHfLEHMLFkGT~~~~~~~~i~~~le~lGG~lNA~Ts~d 81 (696)
T TIGR02110 4 TLPNGLRVHLYHQP--DAKRAAALLRVAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRLMPWVQRQGGQVNATTLER 81 (696)
T ss_pred EcCCCCEEEEEECC--CCCEEEEEEEEeeccCCCCCCCCcHHHHHHHHHhcCCCCCCcHHHHHHHHHHhCCeEEEEEcCC
Confidence 45789999999976 4578999999988877777777888888888885542211 1222 22466777777778
Q ss_pred eeEEEEEecCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHccccChhHHHHHHHHHhhcCC-CCC--H---HHH
Q 004577 647 KLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQS-FYD--V---DEK 720 (744)
Q Consensus 647 gi~l~~~G~~~kl~~ll~~i~~~l~~~~~~~~~f~~~k~~~~~~~~n~~~~p~~~a~~~~~~ll~~~-~~~--~---~~~ 720 (744)
...+.++..+++++..++.+.+.+.++.|+++.|++.|+.++.+++....+|..++...+...++.. .|. . .+.
T Consensus 82 ~T~y~~~v~~~~l~~aL~lLaD~l~~P~f~eeeierEr~vvl~Ei~~~~ddp~~~~~~~l~~~l~~~HPy~~~~iGt~es 161 (696)
T TIGR02110 82 TTAFFFELPAAALAAGLARLCDMLARPLLTAEDQQREREVLEAEYIAWQNDADTLREAALLDALQAGHPLRRFHAGSRDS 161 (696)
T ss_pred eEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 8899999999999999999999999999999999999999999999887679888988888877643 332 2 334
Q ss_pred HHHhccCCHHHHHHHHHHHHH
Q 004577 721 LSILHGLSLADLMAFIPELRS 741 (744)
Q Consensus 721 ~~~l~~it~~d~~~~~~~~~~ 741 (744)
++.+..++.+|+++|+++++.
T Consensus 162 L~~it~~t~edL~~F~~~~Y~ 182 (696)
T TIGR02110 162 LALPNTAFQQALRDFHRRHYQ 182 (696)
T ss_pred HhCcccchHHHHHHHHHHhcc
Confidence 444444569999999999874
No 26
>PHA03081 putative metalloprotease; Provisional
Probab=98.03 E-value=9.9e-05 Score=76.69 Aligned_cols=164 Identities=16% Similarity=0.227 Sum_probs=100.1
Q ss_pred cCCCCCCCCCCCCchHHHHHhcccCccCCCChhHHHHHHHhcCCccceeeCCCeeEEEEEeC-hhhHHHHHHHHHHhhhC
Q 004577 106 GMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIK-REFLKGALMRFSQFFIS 184 (744)
Q Consensus 106 ~~Gs~~dp~~~~GlAhllehmlf~Gs~~~~~~~~~~~~l~~~g~~~na~t~~d~t~~~~~~~-~~~l~~~l~~l~~~~~~ 184 (744)
+.|.-.|-.+..|+||++||.+-. | +-..| -.||+|.+.+..|..... ......++.-+..+|+.
T Consensus 26 ~fgfe~di~~~lg~ahllehili~----f----d~~~f------~anast~r~ymsfwc~sirg~~y~DAvrtliSWFF~ 91 (595)
T PHA03081 26 NFGFENDIGEILGIAHLLEHILIS----F----DSSKF------VANASTARSYMSFWCKSIRGRSYIDAIRTLISWFFD 91 (595)
T ss_pred ccccccchHHHHhHHHHHHHHeee----c----chHHh------cccchhhhhhHhHhhHhhcCCchHHHHHHHHHHhcc
Confidence 577777777889999999999863 1 11222 237888888888887643 33456778777777777
Q ss_pred CC-----CChHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhCCCCCCCCCCCcCChhhhhhhhhcCccHHHHHHHHHHh
Q 004577 185 PL-----MKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMN 259 (744)
Q Consensus 185 P~-----f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~f~~~ 259 (744)
+. |+...++..+..+.+|+=- .+.....++.+ ..+.+|.-|+ .|-..-|.+-. ..++-|.+-.++
T Consensus 92 ~~~Lr~~F~~~~ik~~ikELENEYYF--RnEvfHCmDvL-TfL~gGDLYN---GGRi~ML~~l~----~i~~~L~~RM~~ 161 (595)
T PHA03081 92 NGKLKDNFSLSKIRNHIKELENEYYF--RNEVFHCMDVL-TFLGGGDLYN---GGRIDMLDNLN----DVRDMLSNRMHR 161 (595)
T ss_pred CCccccccchhhHHHHHHHHhhhhhh--hhhhHHHHHHH-HHhcCCcccC---CchHHHHhhhH----HHHHHHHHHHHh
Confidence 64 6666666667777776632 23333344444 3344555554 23334443200 233344444433
Q ss_pred cccCCCcEEEEEeCCCHHHHHHHHHHHhccccCCCCC
Q 004577 260 YYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQI 296 (744)
Q Consensus 260 ~y~~~~~~lvi~G~~~~~~l~~lv~~~f~~i~~~~~~ 296 (744)
- +..|.++.|- .++ +....++.+.||.+|.-+..
T Consensus 162 I-~GpniVIFVk-~ln-~~~l~lL~~TFGtLP~~P~~ 195 (595)
T PHA03081 162 I-SGPNIVIFVK-ELN-PNTLSLLNNTFGTLPSCPET 195 (595)
T ss_pred h-cCCcEEEEEe-ccC-HHHHHHHHHhcCCCCCCccc
Confidence 3 4445555444 466 67788999999999987643
No 27
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.00021 Score=77.31 Aligned_cols=313 Identities=12% Similarity=0.017 Sum_probs=184.9
Q ss_pred eCCCeeEEEEEeChhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhCCCCCCCCCCCc-
Q 004577 155 TETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFW- 233 (744)
Q Consensus 155 t~~d~t~~~~~~~~~~l~~~l~~l~~~~~~P~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~- 233 (744)
+..+-..+.+.+.++..+.....+..++..-.|+++.+....+....++.-+..+....+..+....+|+........-
T Consensus 631 ~~~~lvn~~Ikv~a~~Y~~~v~Wi~~~l~~~VfD~~Ri~~~~~~~l~~i~~~KRdg~~vlss~~~~~lY~~~slk~s~d~ 710 (1022)
T KOG0961|consen 631 LYDRLVNLRIKVGADKYPLLVKWIQIFLQGVVFDPSRIHQCAQKLLGEIRDRKRDGCTVLSSAVASMLYGKNSLKISFDE 710 (1022)
T ss_pred cchhheeEEEEEccCCcchhHHHHHHHhhhhccCHHHHHHHHHHHHhhhhhhhcCccEehHHHHHHHHhcccchhhcccH
Confidence 5567788999999999999999999999999999999999999999999888888888888888888887665432210
Q ss_pred CChh----hhhhhhhcC-ccHHHHHHHHHHhcccCCCcEEEEEeCCCH-HH-HHHHHHHHhccccCCCCCCCCCccc---
Q 004577 234 GNKK----SLIGAMEKG-INLQEQIMKLYMNYYQGGLMKLVVIGGEPL-DT-LQSWVVELFANVRKGPQIKPQFTVE--- 303 (744)
Q Consensus 234 G~~~----~l~~~~~~~-~~~~~~l~~f~~~~y~~~~~~lvi~G~~~~-~~-l~~lv~~~f~~i~~~~~~~~~~~~~--- 303 (744)
-..+ .|.+...++ .-..+.+..-.+-....+.+.+-++||++- ++ +..| ........-++ |...+..+
T Consensus 711 L~~Ek~l~ei~~~v~n~~~~Il~~~e~mR~y~l~~n~~~ihvvgDI~kid~~~~~W-n~l~~~~~~~n-P~~~f~~tf~~ 788 (1022)
T KOG0961|consen 711 LVLEKLLEEISKDVMNNPEAILEKLEQMRSYALFSNGVNIHVVGDIDKIDPKMLSW-NWLQADPRFGN-PGHQFSATFEA 788 (1022)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcceEEEEEeehhcCCccccCc-hhhhcCcccCC-chhhccccccc
Confidence 0011 111111111 112222222222122467788999999872 11 1111 01111111111 11111100
Q ss_pred -----ccccccceEEEE-eecccccEEEEEEEcCC--CchhhhcchHHHHHHHhcCCCCchHHHHHHhcCCcceeecccC
Q 004577 304 -----GTIWKACKLFRL-EAVKDVHILDLTWTLPC--LHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVG 375 (744)
Q Consensus 304 -----~~~~~~~~~~~~-~~~~~~~~l~l~~~~~~--~~~~~~~~~~~~l~~lLg~~~~~~L~~~Lr~~gl~y~~~~~~~ 375 (744)
...-+..+...+ .|..+.+ .+++.+|. .+.+....+..++..+|+. ..|.++..+|..||||+.+....
T Consensus 789 ~~~~s~e~gsssk~~~I~~p~sESs--~l~~sip~~~~w~dpel~~~~l~~~YL~~-~eGPfW~~IRG~GLAYGanm~~~ 865 (1022)
T KOG0961|consen 789 GENVSLELGSSSKELLIGVPGSESS--FLYQSIPLDANWNDPELIPAMLFGQYLSQ-CEGPFWRAIRGDGLAYGANMFVK 865 (1022)
T ss_pred CcccceeccCCcceeEecCCCcccc--ceeeecccccccCCcchhHHHHHHHHHHh-cccchhhhhcccchhccceeEEe
Confidence 000011222222 3333334 44444444 5566677888999999995 88999999999999999887665
Q ss_pred CCcCCccccccEEEEEEEeCchhhhcHHHHHHHHHHHHHHHHh--cCCchhHHHHHHHHhhcccccccCCCcHHHH--HH
Q 004577 376 DEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQ--VSPQKWIFKELQDIGNMEFRFAEEQPQDDYA--AE 451 (744)
Q Consensus 376 ~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~l~~--~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~--~~ 451 (744)
.. .+.+++.+...+ ++.++.+.-.+.++.+.. ..+++.+++-||........-.+. +...-+ ..
T Consensus 866 ~d-------~~~~~~~iyr~a----d~~kaye~~rdiV~~~vsG~~e~s~~~~egAk~s~~~~~~~~En-g~~~~a~~~~ 933 (1022)
T KOG0961|consen 866 PD-------RKQITLSIYRCA----DPAKAYERTRDIVRKIVSGSGEISKAEFEGAKRSTVFEMMKREN-GTVSGAAKIS 933 (1022)
T ss_pred cc-------CCEEEEEeecCC----cHHHHHHHHHHHHHHHhcCceeecHHHhccchHHHHHHHHHHhc-cceechHHHH
Confidence 42 236666665544 677777777788888765 237889999998765554432221 111011 11
Q ss_pred HHHhc-CCCCCccccccccccccCCHHHHHHHHhc
Q 004577 452 LAGNL-LIYPAEHVIYGEYMYEVWDEEMIKHLLGF 485 (744)
Q Consensus 452 l~~~~-~~~~~~~~l~~~~~i~~vt~~~i~~~~~~ 485 (744)
+..+. +.-.+.+ ...-.++.++|.+++.+.++.
T Consensus 934 ~l~~~~q~~~~fn-~~~leri~nvT~~~~~~~~~~ 967 (1022)
T KOG0961|consen 934 ILNNFRQTPHPFN-IDLLERIWNVTSEEMVKIGGP 967 (1022)
T ss_pred HHHHHHhcCCccc-HHHHHHHHHhhHHHHHHhccc
Confidence 11111 2211211 122345889999999998875
No 28
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=97.95 E-value=7.8e-05 Score=68.97 Aligned_cols=132 Identities=12% Similarity=0.083 Sum_probs=108.0
Q ss_pred eEEeecCCccCCceeeEEEEEeccCCCCCHHHHHHHHHHHHHHHHHH-----HHHhhhhhhcceEEEEEEeCceeEEEEE
Q 004577 579 RFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDEL-----NEIIYQASVAKLETSVSIFSDKLELKVY 653 (744)
Q Consensus 579 ~vw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~~~~l~~~ll~~~l-----~e~~y~a~~agl~~~~~~~~~gi~l~~~ 653 (744)
||+..+++ ..|.+.+.+.|.......++....++.|+..++.... .++.-.....|.++....+...+.+.++
T Consensus 1 ~V~~~~~~--~~~~~~~~l~~~~Gs~~e~~~~~G~a~ll~~l~~~gs~~~~~~~l~~~l~~~G~~~~~~t~~d~t~~~~~ 78 (149)
T PF00675_consen 1 KVVLVEDP--GSPVVSVSLVFKAGSRYEPPGKPGLAHLLEHLLFRGSKKYSSDELQEELESLGASFNASTSRDSTSYSAS 78 (149)
T ss_dssp EEEEEEST--TSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSBHHHHHHHHHHTTCEEEEEEESSEEEEEEE
T ss_pred CEEEEEcC--CCCEEEEEEEEeeccCCCCCCCCchhhhhhhhcccccchhhhhhhHHHhhhhccccceEecccceEEEEE
Confidence 46667754 5689999999999888888888888888888765441 1122222345888888888999999999
Q ss_pred ecCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHccccChhHHHHHHHHHhhcC
Q 004577 654 GFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQ 712 (744)
Q Consensus 654 G~~~kl~~ll~~i~~~l~~~~~~~~~f~~~k~~~~~~~~n~~~~p~~~a~~~~~~ll~~ 712 (744)
+.+++++.+++.+.+.+.++.|+++.|++.|.+++.+++....+|...+...+...++.
T Consensus 79 ~~~~~~~~~l~~l~~~~~~P~f~~~~~~~~r~~~~~ei~~~~~~~~~~~~~~l~~~~f~ 137 (149)
T PF00675_consen 79 VLSEDLEKALELLADMLFNPSFDEEEFEREREQILQEIEEIKENPQELAFEKLHSAAFR 137 (149)
T ss_dssp EEGGGHHHHHHHHHHHHHSBGGCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHT
T ss_pred EecccchhHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999998777988999988888765
No 29
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.55 Score=48.69 Aligned_cols=356 Identities=11% Similarity=0.055 Sum_probs=194.0
Q ss_pred cccEEEEEEEcCCC-chhhhcchHHHHHHHhcCCCCchHHHHHH----hcCCcceeecccCCCcCCccccccEEEEEEEe
Q 004577 320 DVHILDLTWTLPCL-HQEYLKKSEDYLAHLLGHEGRGSLHSFLK----GRGWATSISAGVGDEGMHRSSIAYIFVMSIHL 394 (744)
Q Consensus 320 ~~~~l~l~~~~~~~-~~~~~~~~~~~l~~lLg~~~~~~L~~~Lr----~~gl~y~~~~~~~~~~~~~~~~~g~f~i~~~~ 394 (744)
..+.|-+.+..-+. .+.+..-...+|.++.-.+...|-...|- ..|.--+.+ .+ +. .-..++.+
T Consensus 53 ~TATVGVwidaGSR~EnekNNG~ahFLEhlaFKGT~~Rs~~alElEieniGahLNAy--tS---Re------qT~yyaka 121 (467)
T KOG0960|consen 53 STATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTKNRSQAALELEIENIGAHLNAY--TS---RE------QTVYYAKA 121 (467)
T ss_pred cceEEEEEeccCccccccccccHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHhccc--cc---cc------ceeeehhh
Confidence 34445555544442 23444557788988654444444333332 334332222 21 11 22334444
Q ss_pred CchhhhcHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhcccccccCCCcHHHHHHHHHh--cCCCCCcccccc-cccc
Q 004577 395 TDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGN--LLIYPAEHVIYG-EYMY 471 (744)
Q Consensus 395 ~~~g~~~~~~v~~~i~~~l~~l~~~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~l~~-~~~i 471 (744)
-+ ++++++++.+-+++. +..+.+..+++-|..+..+..--+. +....+...... .+..|....+.+ ...|
T Consensus 122 l~---~dv~kavdiLaDIlq---ns~L~~s~IerER~vILrEmqevd~-~~~eVVfdhLHatafQgtPL~~tilGp~enI 194 (467)
T KOG0960|consen 122 LS---KDVPKAVDILADILQ---NSKLEESAIERERDVILREMQEVDK-NHQEVVFDHLHATAFQGTPLGRTILGPSENI 194 (467)
T ss_pred cc---ccchHHHHHHHHHHH---hCccchhHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHhcCCcccccccChhhhh
Confidence 44 678888887766443 4557777788776655444321111 122233222222 233343333333 5679
Q ss_pred ccCCHHHHHHHHhc-cCccceEEEEEeCCCC-CCCCccccceeeceeeeecCChHHHHhhcCCCCCCCCccCCCCCCCCC
Q 004577 472 EVWDEEMIKHLLGF-FMPENMRIDVVSKSFA-KSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIP 549 (744)
Q Consensus 472 ~~vt~~~i~~~~~~-l~~~n~~i~i~~~~~~-~~~~~~~e~~~~~~y~~~~i~~~~l~~~~~~~~~~~~l~lP~~N~~ip 549 (744)
++++.+|++.+++. +.+.+|.+.-.|- .+ +.-....+++||- ++ .+..|..-|-.
T Consensus 195 ~si~r~DL~~yi~thY~~~RmVlaaaGg-V~He~lv~la~k~fg~------~~---------------~~~~~~~~~~~- 251 (467)
T KOG0960|consen 195 KSISRADLKDYINTHYKASRMVLAAAGG-VKHEELVKLAEKYFGD------LS---------------KLQTGDKVPLV- 251 (467)
T ss_pred hhhhHHHHHHHHHhcccCccEEEEecCC-cCHHHHHHHHHHHcCC------Cc---------------ccccCcCCCCC-
Confidence 99999999999998 9999998877663 20 0111122333331 00 01111110100
Q ss_pred CCccccccCCCCCCCCCCCCeEEeecCCeeEEeecCCccCCceeeEEEEEeccCCCCCHHHHHHHHHHHHHHHHH-----
Q 004577 550 TDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDE----- 624 (744)
Q Consensus 550 ~~~~l~~~~~~~~~~~~~~P~~~~~~~~~~vw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~~~~l~~~ll~~~----- 624 (744)
.| .-.-|+++-++-| .+|.+.+-+.+-...+.. | +...+.+...++...
T Consensus 252 ------------------~~---~~FtgsEvR~rdd---~lP~a~~AiAVEG~~w~~-p-D~~~l~van~iiG~wdr~~g 305 (467)
T KOG0960|consen 252 ------------------PP---ARFTGSEVRVRDD---DLPLAHIAIAVEGVSWAH-P-DYFALMVANTIIGNWDRTEG 305 (467)
T ss_pred ------------------CC---ccccCceeeecCC---CCchhheeeeEecCCcCC-c-cHHHHHHHHHHhhhhhcccC
Confidence 00 0123445555544 478999999888776643 2 222222223333221
Q ss_pred --------HHHHhhhhhhc--ceEEEEEEeCcee-EEEEEe-cCCCHHHHHHHHHHHHccC--CCCHHHHHHHHHHHHHH
Q 004577 625 --------LNEIIYQASVA--KLETSVSIFSDKL-ELKVYG-FNDKLPVLLSKILAIAKSF--LPSDDRFKVIKEDVVRT 690 (744)
Q Consensus 625 --------l~e~~y~a~~a--gl~~~~~~~~~gi-~l~~~G-~~~kl~~ll~~i~~~l~~~--~~~~~~f~~~k~~~~~~ 690 (744)
|.+..-+-.++ =.+|+++..+.|+ -+.+-+ -...+..++..++..-... .+++..-+++|.+++..
T Consensus 306 ~g~~~~s~La~~~~~~~l~~sfqsFnt~YkDTGLwG~y~V~~~~~~iddl~~~vl~eW~rL~~~vteaEV~RAKn~Lkt~ 385 (467)
T KOG0960|consen 306 GGRNLSSRLAQKIQQDQLCHSFQSFNTSYKDTGLWGIYFVTDNLTMIDDLIHSVLKEWMRLATSVTEAEVERAKNQLKTN 385 (467)
T ss_pred CccCCccHHHHHHHHHHHHHHHhhhhcccccccceeEEEEecChhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 11111111111 1345666555554 344444 3355666666666555443 47899999999999999
Q ss_pred HHccccChhHHHHHHHHHhhc-CCCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 004577 691 LKNTNMKPLSHSSYLRLQVLC-QSFYDVDEKLSILHGLSLADLMAFIPELRSQ 742 (744)
Q Consensus 691 ~~n~~~~p~~~a~~~~~~ll~-~~~~~~~~~~~~l~~it~~d~~~~~~~~~~~ 742 (744)
+-.........|.+.-+.+|. ....++.|..+-|++||-++++.+..+.+=.
T Consensus 386 Lll~ldgttpi~ediGrqlL~~Grri~l~El~~rId~vt~~~Vr~va~k~iyd 438 (467)
T KOG0960|consen 386 LLLSLDGTTPIAEDIGRQLLTYGRRIPLAELEARIDAVTAKDVREVASKYIYD 438 (467)
T ss_pred HHHHhcCCCchHHHHHHHHhhcCCcCChHHHHHHHhhccHHHHHHHHHHHhhc
Confidence 888766544458888777775 5778999999999999999999999887643
No 30
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=96.36 E-value=0.051 Score=54.82 Aligned_cols=106 Identities=9% Similarity=0.086 Sum_probs=70.1
Q ss_pred eEEEEEEecCCCCCCCCCCCCchHHHHHhcccCccCCCChhHHHHHHHhcCCccceeeC----C-------CeeEEEEEe
Q 004577 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTE----T-------EHTCYHFEI 166 (744)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~GlAhllehmlf~Gs~~~~~~~~~~~~l~~~g~~~na~t~----~-------d~t~~~~~~ 166 (744)
.+.+.+.+..+.... .+.+=+.-|..-+-..||++++. .++...+..+-|.+++.+. . -...+++.+
T Consensus 91 I~Y~~l~fdl~~l~~-e~l~yl~Ll~~ll~~lgT~~~sy-~el~~~i~~~tGGis~~~~~~~~~~~~~~~~~~l~is~k~ 168 (248)
T PF08367_consen 91 IVYVRLYFDLSDLPE-EDLPYLPLLTDLLGELGTKNYSY-EELSNEIDLYTGGISFSIEVYTDYDDDDKYRPYLVISAKC 168 (248)
T ss_dssp EEEEEEEEE-TTS-C-CCHCCHHHHHHHCCCS-BSSS-H-HHHHHHHHHHSSEEEEEEEEEEEECTECCCEEEEEEEEEE
T ss_pred eEEEEEEecCCCCCH-HHHHhHHHHHHHHHhCCCCCCCH-HHHHHHHHHhCCCeEEEeeeccCCCCccceeEEEEEEEEe
Confidence 999999999985543 34565665555444599999987 6899999987555544431 1 223556678
Q ss_pred ChhhHHHHHHHHHHhhhCCCCChHH-HHHHHHHHHHHHHh
Q 004577 167 KREFLKGALMRFSQFFISPLMKVEA-MEREVLAVDSEFNQ 205 (744)
Q Consensus 167 ~~~~l~~~l~~l~~~~~~P~f~~~~-~~~e~~~v~~e~~~ 205 (744)
..++++++++++.+++.+|.|+... +........+.++.
T Consensus 169 L~~~~~~~~~ll~eil~~~~f~d~~rl~~ll~~~~s~~~~ 208 (248)
T PF08367_consen 169 LDEKLDEAFELLSEILTETDFDDKERLKELLKELKSDMES 208 (248)
T ss_dssp EGGGHHHHHHHHHHHHHCB-TT-HHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998874 33333444444443
No 31
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=96.33 E-value=0.041 Score=52.23 Aligned_cols=95 Identities=14% Similarity=0.122 Sum_probs=53.3
Q ss_pred eeeEEEEEeccCCCCCHHHHHHHHHHHHHHHHH----HHHHhh-hhhh-cceEEEEEEeC--ceeEEEEEecCCCHHHHH
Q 004577 592 RANTYFRINLKGGYDNVKNCILTELFIHLLKDE----LNEIIY-QASV-AKLETSVSIFS--DKLELKVYGFNDKLPVLL 663 (744)
Q Consensus 592 k~~i~~~~~~~~~~~~~~~~~~~~l~~~ll~~~----l~e~~y-~a~~-agl~~~~~~~~--~gi~l~~~G~~~kl~~ll 663 (744)
...+.+.+..+.. .+......+.++..++... |...+. ...+ .++........ .-+.+.+.+-.+++..++
T Consensus 79 ~~~v~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~s~l~~~lr~~~~l~y~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (184)
T PF05193_consen 79 QSIVSIAFPGPPI-KDSKDYFALNLLSSLLGNGMSSRLFQELREKQGLAYSVSASNSSYRDSGLFSISFQVTPENLDEAI 157 (184)
T ss_dssp SEEEEEEEEEEET-GTSTTHHHHHHHHHHHHCSTTSHHHHHHHTTTTSESEEEEEEEEESSEEEEEEEEEEEGGGHHHHH
T ss_pred ccccccccccccc-cccchhhHHHHHHHHHhcCccchhHHHHHhccccceEEEeeeeccccceEEEEEEEcCcccHHHHH
Confidence 4444444444433 2234555566777777666 333222 1111 12222222111 336778888877888877
Q ss_pred HHHHHHHccC---CCCHHHHHHHHHHH
Q 004577 664 SKILAIAKSF---LPSDDRFKVIKEDV 687 (744)
Q Consensus 664 ~~i~~~l~~~---~~~~~~f~~~k~~~ 687 (744)
+.+.+.+... .++++.|+++|.++
T Consensus 158 ~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 158 EAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp HHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 7777776653 48999999999875
No 32
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=90.21 E-value=27 Score=36.79 Aligned_cols=346 Identities=9% Similarity=0.094 Sum_probs=173.2
Q ss_pred ecccccEEEEEEEcCCCchhhhcc-hHHHHHHHhcCCCCch-HHHHHHhcC-CcceeecccCCCcCCccccccEEEEEEE
Q 004577 317 AVKDVHILDLTWTLPCLHQEYLKK-SEDYLAHLLGHEGRGS-LHSFLKGRG-WATSISAGVGDEGMHRSSIAYIFVMSIH 393 (744)
Q Consensus 317 ~~~~~~~l~l~~~~~~~~~~~~~~-~~~~l~~lLg~~~~~~-L~~~Lr~~g-l~y~~~~~~~~~~~~~~~~~g~f~i~~~ 393 (744)
...+..++.+.|..-+...+.+.. ..++|...-|....++ =++..|+.. +.-.+.+... .. +|.++++
T Consensus 39 ~~~~is~l~l~~~AGSRYe~~~~~G~sHllr~f~g~~Tq~~sal~ivr~se~~GG~Lss~~t-----Re----~~~~tvt 109 (429)
T KOG2583|consen 39 APTAISSLSLAFRAGSRYEPADQQGLSHLLRNFVGRDTQERSALKIVRESEQLGGTLSSTAT-----RE----LIGLTVT 109 (429)
T ss_pred CCCcceEEEEEEecCccCCccccccHHHHHHHhcccCccccchhhhhhhhHhhCceeeeeee-----cc----eEEEEEE
Confidence 345667899999887765444322 2334444444333332 234445221 1112222221 12 8889999
Q ss_pred eCchhhhcHHHHHHHHHHHHHHHHhc-CCchhHHHHHH-HHhhcccccccCCCcHHHHHHHHHh-cCCCCCcccccc-cc
Q 004577 394 LTDSGLEKIFDIIGFVYQYIKLLRQV-SPQKWIFKELQ-DIGNMEFRFAEEQPQDDYAAELAGN-LLIYPAEHVIYG-EY 469 (744)
Q Consensus 394 ~~~~g~~~~~~v~~~i~~~l~~l~~~-~~~~~~l~~~k-~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~l~~-~~ 469 (744)
+.. ++.+-.+. .|.++... .|-+||++... ..+.....++ .+...+...... ...-+.-+-++. ..
T Consensus 110 ~lr---d~~~~~l~----~L~~V~~~paFkPwEl~D~~~~ti~~~l~~~---t~~~~a~e~lH~aAfRngLgnslY~p~~ 179 (429)
T KOG2583|consen 110 FLR---DDLEYYLS----LLGDVLDAPAFKPWELEDVVLATIDADLAYQ---TPYTIAIEQLHAAAFRNGLGNSLYSPGY 179 (429)
T ss_pred Eec---ccHHHHHH----HHHHhhcccCcCchhhhhhhhhhhHHHhhhc---ChHHHHHHHHHHHHHhcccCCcccCCcc
Confidence 887 56655544 45555444 68899999877 4444443332 333333222211 111133333333 34
Q ss_pred ccccCCHHHHHHHHhc-cCccceEEEEEeCCCCCCCCccccceeeceeeeecCChHHHHhhcCCCCCCCCccCCCCCCCC
Q 004577 470 MYEVWDEEMIKHLLGF-FMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFI 548 (744)
Q Consensus 470 ~i~~vt~~~i~~~~~~-l~~~n~~i~i~~~~~~~~~~~~~e~~~~~~y~~~~i~~~~l~~~~~~~~~~~~l~lP~~N~~i 548 (744)
.+.+++.+++..++++ +...|+.++-++++. ..++++.... +.+|.-++--
T Consensus 180 ~vg~vss~eL~~Fa~k~fv~gn~~lvg~nvd~-----------------------~~L~~~~~~~-----~~~~~~~~~k 231 (429)
T KOG2583|consen 180 QVGSVSSSELKDFAAKHFVKGNAVLVGVNVDH-----------------------DDLKQFADEY-----APIRDGLPLK 231 (429)
T ss_pred cccCccHHHHHHHHHHHhhccceEEEecCCCh-----------------------HHHHHHHHHh-----ccccCCCCCC
Confidence 6889999999999998 999999887777653 1233332110 1122222222
Q ss_pred CCCccccccCCCCCCCCCCCCeEEeecCCeeEEeecCCccCCceeeEEEEEeccCCCCCHHHHHHHHHHHHHHHHHH---
Q 004577 549 PTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDEL--- 625 (744)
Q Consensus 549 p~~~~l~~~~~~~~~~~~~~P~~~~~~~~~~vw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~~~~l~~~ll~~~l--- 625 (744)
|....+...+. + .+..| -+..+.+-=..............+- +...|....
T Consensus 232 ~a~a~~~gGe~---------R---k~~~g-------------~~~~v~vagegAAa~~~k~~~a~av-~~~~Lg~~~~~k 285 (429)
T KOG2583|consen 232 PAPAKYSGGEA---------R---KDARG-------------NRVHVAVAGEGAAAGNLKVLAAQAV-LLAALGNSAPVK 285 (429)
T ss_pred CCCccccCCcc---------c---cccCC-------------ceeEEEEecCcccccchHHHHHHHH-HHHHHhcccccc
Confidence 22222211111 0 00111 1222322222222222222222222 222233222
Q ss_pred --HHHhhhh-hhc---ceE---EEEEEeCce-eEEEEEecCCCHHHHHHHHHHHHccCCC---CHHHHHHHHHHHHHHHH
Q 004577 626 --NEIIYQA-SVA---KLE---TSVSIFSDK-LELKVYGFNDKLPVLLSKILAIAKSFLP---SDDRFKVIKEDVVRTLK 692 (744)
Q Consensus 626 --~e~~y~a-~~a---gl~---~~~~~~~~g-i~l~~~G~~~kl~~ll~~i~~~l~~~~~---~~~~f~~~k~~~~~~~~ 692 (744)
+..+-.+ ..+ |.+ +....++.| +.+-+.+-..+....++.....++.... +-..=..++..+...+.
T Consensus 286 ~~t~~~~~aa~~a~~~~~s~sA~~a~ysDsGL~gv~~~~~~~~a~~~v~s~v~~lks~~~~~id~~~~~a~~~~l~~~~~ 365 (429)
T KOG2583|consen 286 RGTGLLSEAAGAAGEQGASASAFNAPYSDSGLFGVYVSAQGSQAGKVVSSEVKKLKSALVSDIDNAKVKAAIKALKASYL 365 (429)
T ss_pred cccchHHHHHhhccccCceeeeecccccCCceEEEEEEecCccHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhh
Confidence 1111111 111 333 223334566 4777777778888888888888877543 32222223333333332
Q ss_pred ccccChhHHHHHHHHHhhcCCCCCHHHHHHHhccCCHHHHHHHHHHHH
Q 004577 693 NTNMKPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIPELR 740 (744)
Q Consensus 693 n~~~~p~~~a~~~~~~ll~~~~~~~~~~~~~l~~it~~d~~~~~~~~~ 740 (744)
+. ..+...+...+..+.. ++++.+++|++|+-.|++...++++
T Consensus 366 ss-~~a~~~~~~~~a~~~~----~~d~~i~~id~Vt~sdV~~a~kk~~ 408 (429)
T KOG2583|consen 366 SS-VEALELATGSQANLVS----EPDAFIQQIDKVTASDVQKAAKKFL 408 (429)
T ss_pred cc-hHHHHHhhHHHhcCCC----ChHHHHHHhccccHHHHHHHHHHhc
Confidence 22 2255555554433222 8899999999999999999999998
No 33
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=58.54 E-value=3.2 Score=33.76 Aligned_cols=19 Identities=58% Similarity=0.709 Sum_probs=0.0
Q ss_pred cccccCccccccccccccc
Q 004577 60 EETFDDEYEDDEYEDEEED 78 (744)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~ 78 (744)
.|+++|+.|+++.++++++
T Consensus 12 se~dsdEdeeeededEEed 30 (101)
T PF09026_consen 12 SESDSDEDEEEEDEDEEED 30 (101)
T ss_dssp -------------------
T ss_pred cccccccchhhhhhccccc
Confidence 3444444444444333333
No 34
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=53.56 E-value=42 Score=24.36 Aligned_cols=50 Identities=8% Similarity=0.130 Sum_probs=42.6
Q ss_pred CCCChhHHHHHHHhcCCccceeeCCCeeEEEEEeChhhHHHHHHHHHHhh
Q 004577 133 EFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFF 182 (744)
Q Consensus 133 ~~~~~~~~~~~l~~~g~~~na~t~~d~t~~~~~~~~~~l~~~l~~l~~~~ 182 (744)
.|+....+..+++++++.+--....+.-.+.+.++.+..+.+.+.+.++.
T Consensus 4 ~Y~~~~~v~~~l~~~~~~i~~~~y~~~V~~~v~v~~~~~~~f~~~l~~~t 53 (56)
T PF09186_consen 4 DYSQYGKVERLLEQNGIEIVDEDYTDDVTLTVAVPEEEVEEFKAQLTDLT 53 (56)
T ss_dssp -CCCHHHHHHHHHHTTTEEEEEEECTTEEEEEEEECCCHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHHHCCCEEEcceecceEEEEEEECHHHHHHHHHHHHHHc
Confidence 46666789999999999997777778899999999999999998888764
No 35
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=43.39 E-value=1.1e+02 Score=27.70 Aligned_cols=69 Identities=14% Similarity=0.070 Sum_probs=43.7
Q ss_pred chHHHHHHhcCCcceeecccCCCcCCccccccEEEEEEEeCchhhhcHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhh
Q 004577 355 GSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGN 434 (744)
Q Consensus 355 ~~L~~~Lr~~gl~y~~~~~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~l~~~~~~~~~l~~~k~~~~ 434 (744)
+++.+.|.++||+.......+. . . ..+.+|++|.+-..++...+.+.+..-.-.++++++++...+.+.
T Consensus 72 sr~l~~Le~~GlI~R~~~~~Dr-----R----~--~~l~LT~~G~~~~~~~~~~~~~~~~~~l~~~ls~ee~~~l~~~L~ 140 (144)
T PRK11512 72 TRMLDRLVCKGWVERLPNPNDK-----R----G--VLVKLTTSGAAICEQCHQLVGQDLHQELTKNLTADEVATLEHLLK 140 (144)
T ss_pred HHHHHHHHHCCCEEeccCcccC-----C----e--eEeEEChhHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 3466777899999876543221 1 3 455678888766666666554333332356899999888776543
No 36
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=39.60 E-value=1.3e+02 Score=27.03 Aligned_cols=67 Identities=10% Similarity=0.033 Sum_probs=46.0
Q ss_pred chHHHHHHhcCCcceeecccCCCcCCccccccEEEEEEEeCchhhhcHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHh
Q 004577 355 GSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIG 433 (744)
Q Consensus 355 ~~L~~~Lr~~gl~y~~~~~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~l~~~~~~~~~l~~~k~~~ 433 (744)
+++...|.++||+.......+. . ...+.+|++|.+-..++.....+..+.+ -.++++++.+.....+
T Consensus 64 t~~v~~Le~~GlV~r~~~~~Dr-----R------~~~l~LT~~G~~~~~~~~~~~~~~~~~~-~~~l~~ee~~~l~~~l 130 (144)
T PRK03573 64 VRTLDQLEEKGLISRQTCASDR-----R------AKRIKLTEKAEPLISEVEAVINKTRAEI-LHGISAEEIEQLITLI 130 (144)
T ss_pred HHHHHHHHHCCCEeeecCCCCc-----C------eeeeEEChHHHHHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHH
Confidence 3455677799999876543221 1 2566778989777777777666666665 5689998888876654
No 37
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=37.17 E-value=11 Score=30.76 Aligned_cols=9 Identities=0% Similarity=0.076 Sum_probs=3.6
Q ss_pred CchHHHHHh
Q 004577 118 GLAHFLEHM 126 (744)
Q Consensus 118 GlAhllehm 126 (744)
-+++..++|
T Consensus 45 ~fgea~~~~ 53 (101)
T PF09026_consen 45 EFGEAMAYF 53 (101)
T ss_dssp -HHHHHHHH
T ss_pred hHHHHHhhc
Confidence 344444443
No 38
>PRK10870 transcriptional repressor MprA; Provisional
Probab=31.60 E-value=1.9e+02 Score=27.25 Aligned_cols=77 Identities=18% Similarity=0.245 Sum_probs=51.6
Q ss_pred HHHHhcCCC--CchHHHHHHhcCCcceeecccCCCcCCccccccEEEEEEEeCchhhhcHHHHHHHHHHHHHHHHhcCCc
Q 004577 345 LAHLLGHEG--RGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQ 422 (744)
Q Consensus 345 l~~lLg~~~--~~~L~~~Lr~~gl~y~~~~~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~l~~~~~~ 422 (744)
|+..++-.. -+++...|.++||+.......+. . . ..+.+|++|.+-++++.....+.+..+ -.+++
T Consensus 77 La~~l~l~~~tvsr~v~rLe~kGlV~R~~~~~Dr-----R----~--~~v~LT~~G~~~~~~i~~~~~~~~~~~-~~~ls 144 (176)
T PRK10870 77 LSCALGSSRTNATRIADELEKRGWIERRESDNDR-----R----C--LHLQLTEKGHEFLREVLPPQHNCLHQL-WSALS 144 (176)
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCC-----C----e--eEEEECHHHHHHHHHHHHHHHHHHHHH-HhcCC
Confidence 455555321 13466778899999876543221 1 2 556778999888888888887777776 46789
Q ss_pred hhHHHHHHHHh
Q 004577 423 KWIFKELQDIG 433 (744)
Q Consensus 423 ~~~l~~~k~~~ 433 (744)
+++.+.....+
T Consensus 145 ~~e~~~l~~~L 155 (176)
T PRK10870 145 TTEKDQLEQIT 155 (176)
T ss_pred HHHHHHHHHHH
Confidence 98887776554
No 39
>TIGR02648 rep_term_tus DNA replication terminus site-binding protein. Members of this protein family are found on the main chromosomes of a number of the Gammaproteobacteria; this model excludes related plasmid proteins, which score between trusted and noise cutoffs. This protein, DNA replication terminus site-binding protein, binds specific DNA sites near the replication terminus to arrest the DNA replication fork.
Probab=24.97 E-value=3.1e+02 Score=28.09 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=41.9
Q ss_pred CCC-CCCcCChhhhhhhhhcCccHHHHHHHHHHhcccCCCcEEEEEeCCCHHHHHHHHHHHhccc
Q 004577 227 AFN-KFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANV 290 (744)
Q Consensus 227 p~~-~~~~G~~~~l~~~~~~~~~~~~~l~~f~~~~y~~~~~~lvi~G~~~~~~l~~lv~~~f~~i 290 (744)
|.+ ||+|.|...+++ +|++++.+--++-+.+++..- .++-++-...|++-...|
T Consensus 156 p~SvRFgWanK~iIk~------~tk~evL~~L~ksl~~~r~v~----p~~~eqW~~~l~~Ei~~I 210 (300)
T TIGR02648 156 PASVRFGWANKHIIKN------VTRDEILAQLEKSLNSGRAVA----PYTREQWQELVEREIQDI 210 (300)
T ss_pred CCeeeeecccchhhhh------cCHHHHHHHHHHHHhcCCCCC----CCCHHHHHHHHHHHHHHH
Confidence 443 699999999998 999999999999998777643 567788777777654444
No 40
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=20.71 E-value=3.3e+02 Score=20.04 Aligned_cols=45 Identities=18% Similarity=0.094 Sum_probs=34.6
Q ss_pred HHHHHHHhcCCccceee-CCCeeEEEEEeChhhHHHHHHHHHHhhh
Q 004577 139 EYDSYLSKHGGSSNAYT-ETEHTCYHFEIKREFLKGALMRFSQFFI 183 (744)
Q Consensus 139 ~~~~~l~~~g~~~na~t-~~d~t~~~~~~~~~~l~~~l~~l~~~~~ 183 (744)
.+.+.+.+.|..+.... +.....+++.++.++.+.++..+.+.|.
T Consensus 20 ~i~~~l~~~~I~v~~i~~~~s~~~is~~v~~~~~~~~~~~lh~~~~ 65 (66)
T cd04922 20 TFFSALAKANVNIRAIAQGSSERNISAVIDEDDATKALRAVHERFF 65 (66)
T ss_pred HHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHh
Confidence 56677788888875543 2345899999999999999998888765
No 41
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=20.12 E-value=4.2e+02 Score=25.22 Aligned_cols=68 Identities=19% Similarity=0.085 Sum_probs=44.8
Q ss_pred chHHHHHHhcCCcceeecccCCCcCCccccccEEEEEEEeCchhhhcHHHHHHHHHHHHHHHHhcCCch--------hHH
Q 004577 355 GSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQK--------WIF 426 (744)
Q Consensus 355 ~~L~~~Lr~~gl~y~~~~~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~l~~~~~~~--------~~l 426 (744)
+++.+.|-++||+.-.....+ .. . ..+.+|++|.+-.+++...+...-..+ -.|+++ .++
T Consensus 77 tr~l~rLE~kGlI~R~~~~~D-----rR----~--~~I~LTekG~~l~~~l~~~~~~~e~~~-~~~~s~~~~l~~~~~e~ 144 (185)
T PRK13777 77 FNFSKKLEERGYLTFSKKEDD-----KR----N--TYIELTEKGEELLLETMEEYDPENNSV-FNGALPLRELYGKFPEF 144 (185)
T ss_pred HHHHHHHHHCCCEEecCCCCC-----CC----e--eEEEECHHHHHHHHHHHHHHHHHHHHH-HhcccHHHHHhhhhHHH
Confidence 345567779999986543222 11 2 556778988777777766666555555 458888 788
Q ss_pred HHHHHHhh
Q 004577 427 KELQDIGN 434 (744)
Q Consensus 427 ~~~k~~~~ 434 (744)
++...++.
T Consensus 145 ~~l~~ll~ 152 (185)
T PRK13777 145 IELMAIVR 152 (185)
T ss_pred HHHHHHHH
Confidence 87776654
Done!