Query 004577
Match_columns 744
No_of_seqs 265 out of 2336
Neff 9.5
Searched_HMMs 29240
Date Tue Mar 26 18:40:42 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004577.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1877-1881//hhsearch_pdb/004577hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q2l_A Protease III; hydrolase 1.0 1 1 773.2 75.3 664 9-742 6-674 (939)
2 3cww_A Insulysin, insulin-degr 1.0 1 1 771.6 79.6 675 3-742 14-693 (990)
3 2fge_A Atprep2;, zinc metallop 1.0 1 1 556.9 39.3 638 14-742 28-755 (995)
4 3s5m_A Falcilysin; M16 metallo 1.0 1 1 495.7 40.3 652 16-741 79-925 (1193)
5 3eoq_A Putative zinc protease; 1.0 1 1 458.1 38.7 400 24-499 2-404 (406)
6 3ami_A Zinc peptidase; alpha/b 1.0 1 1 456.7 44.2 412 22-500 5-423 (445)
7 3hdi_A Processing protease; CA 1.0 1 1 440.9 39.7 401 24-500 2-405 (421)
8 1pp9_A Ubiquinol-cytochrome C 1.0 1 1 424.7 42.4 407 20-499 10-428 (446)
9 1hr6_B Beta-MPP, mitochondrial 1.0 1 1 416.1 42.3 409 21-499 4-428 (443)
10 1hr6_A Alpha-MPP, mitochondria 1.0 1 1 411.7 38.7 403 21-499 3-437 (475)
No 1
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=1.00 E-value=1 Score=773.21 Aligned_cols=664 Identities=26% Similarity=0.432 Sum_probs=598.6
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 57885336978645621789278978999967998867765323589765543456755665335543344430223101
Q 004577 9 SSDEIVIKSPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVK 88 (744)
Q Consensus 9 ~~~~~~~~~~~d~~~~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (744)
+..+.|+||+.|.+.|+.++|+|||+|++++++.. +
T Consensus 6 ~~~~~~~~~~~d~~~~~~~~L~NGl~v~~~~~~~~--------------~------------------------------ 41 (939)
T 1q2l_A 6 PIQETIRKSDKDNRQYQAIRLDNGMVVLLVSDPQA--------------V------------------------------ 41 (939)
T ss_dssp ECCSCCCCCTTCCCEEEEEEETTSCEEEEEECTTC--------------S------------------------------
T ss_pred CCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCC--------------C------------------------------
T ss_conf 15566727988886548999369998999978898--------------8------------------------------
Q ss_pred CCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCEEEEEEEECH
Q ss_conf 45655645537999993678888999998906999876025866799901899999963995006647980699998293
Q 004577 89 GKGIFSQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKR 168 (744)
Q Consensus 89 ~~~~~~~~~~~~~~l~v~~Gs~~dp~~~~GlAhllehmlf~Gs~~~p~~~~~~~~l~~~g~~~na~t~~~~t~~~~~~~~ 168 (744)
.+++++++++|+++||.+.+|+|||+|||+|+||++||..+++.++++.+||.+||+|+.|+|+|++++++
T Consensus 42 ---------~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~~NA~T~~d~T~y~~~~~~ 112 (939)
T 1q2l_A 42 ---------KSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNASTAPYRTAFYLEVEN 112 (939)
T ss_dssp ---------SEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEEEEEECSSCEEEEEEECG
T ss_pred ---------CEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCEEEEEEECH
T ss_conf ---------16899996725888999998569999987806888799936599999976995157988986799999478
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 33999999999833378999488999998999999860399699999999961899999997776775523225314911
Q 004577 169 EFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGIN 248 (744)
Q Consensus 169 ~~l~~~l~~~~~~~~~P~~~~~~~~~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~~~L~~~~~~~~~ 248 (744)
++|+.+|+++++++.+|.|+++.+++|+++|.+|++.+.+++.+++.+.+..++|++|||+++.+|+.++|.+ ..+.+
T Consensus 113 ~~l~~~L~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~--~~~~~ 190 (939)
T 1q2l_A 113 DALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSD--KPGNP 190 (939)
T ss_dssp GGHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSSCTTSGGGSCCSCCHHHHSC--BTTBC
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHC--CCCCH
T ss_conf 9999999999999857799989999999999999985649879999999997568999976678899999716--78845
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC---CCEEEEEEECCCCCEEE
Q ss_conf 899999999820557872899990999899999999972332478878887765533334---42089996616412999
Q 004577 249 LQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWK---ACKLFRLEAVKDVHILD 325 (744)
Q Consensus 249 ~~~~l~~f~~~~Y~~~~~~lvi~G~~~~~~l~~lv~~~f~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~ 325 (744)
++++|++||++||+|+||+|+|+|++++++++++++++|+.||++..+.+... .+++. .+..+...+..++..+.
T Consensus 191 ~~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (939)
T 1q2l_A 191 VQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEIT--VPVVTDAQKGIIIHYVPALPRKVLR 268 (939)
T ss_dssp HHHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCCCCCCCCCCC--SCSCCGGGSSEEEEECCSSCCCEEE
T ss_pred HHHHHHHHHHHCCCHHHEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCHHHCCEEEEEEECCCCCEEE
T ss_conf 99999999996158735699997499999999999998643335887899788--8999978947799998278771899
Q ss_pred EEEECCCCCHHHHCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCEEEEEEEECCHHHHCHHHH
Q ss_conf 99983897344410669999999639999638999984698340302127776776543227899999390103009999
Q 004577 326 LTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDI 405 (744)
Q Consensus 326 i~~~~p~~~~~~~~~~~~~l~~lLg~~~~~sL~~~Lr~~glay~i~~~~~~~~~~~~~~~g~f~i~~~l~~~g~~~~~~v 405 (744)
+.|++|.....++..++.+++++||+++.|+|++.||++||+|+++++..... ..+.|.|.|++.+++.|.++++++
T Consensus 269 i~~~~~~~~~~~~~~~~~~l~~lLg~~~~s~L~~~L~~~gl~~~~~a~~~~~~---~~~~g~f~i~~~~~~~~~~~~~~~ 345 (939)
T 1q2l_A 269 VEFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGISANSDPIV---NGNSGVLAISASLTDKGLANRDQV 345 (939)
T ss_dssp EEEEEECCGGGGGGCHHHHHHHHHHCCCTTSHHHHHHHTTCEEEEEEEEESST---TSSEEEEEEEEEECHHHHHTHHHH
T ss_pred EEEECCCHHHHHHHCHHHHHHHHHCCCCCCCHHHHHHHCCCCHHEEECCCCCC---CCCCEEEEEEEEECHHHHHHHHHH
T ss_conf 99976872776654789999999568998719999987697121243345556---888518999999894666529999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 99999999999963990468999999852023246688908999999986478997542113533446989999999940
Q 004577 406 IGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGF 485 (744)
Q Consensus 406 ~~~i~~~l~~l~~~g~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~i~~~t~e~i~~~~~~ 485 (744)
++.++++|+.+++.|+++++++++|+....+|.+....++.+++..++..+..+++++++.....++++|+++|++++++
T Consensus 346 ~~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~vt~~~i~~~~~~ 425 (939)
T 1q2l_A 346 VAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVKERLAM 425 (939)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHTTSCGGGTTTTTTCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCCHHHHCCCHHHHHHHHHH
T ss_conf 99999999999867985999999999987220345778859999999998650899997117221310699999999984
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCCEEECEEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 69564499998289888878631332201012103894789853399999987668999988999840122577888778
Q 004577 486 FMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVT 565 (744)
Q Consensus 486 l~~~n~~i~i~~p~~~~~~~~~~e~~~~~~y~~~~i~~~~~~~~~~~~~~~~~l~lP~~N~~ip~~~~i~~~~~~~~~~~ 565 (744)
|.++++++++++|+ ...++.++||+++|.+.+++++.++.|..... ...+.+|.+|+|+|+++.+......
T Consensus 426 l~~~~~~~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~n~~~~~~~~~~~~~~~----- 496 (939)
T 1q2l_A 426 MTPQNARIWYISPK---EPHNKTAYFVDAPYQVDKISAQTFADWQKKAA-DIALSLPELNPYIPDDFSLIKSEKK----- 496 (939)
T ss_dssp CSGGGCEEEEECTT---CCCCEECTTTCCEEEEEECCHHHHHHHHHHHH-TCCCCCCCCCTTCCCCCCCCCCSSC-----
T ss_pred CCHHHCEEEEECCC---CCCCCCCCEECCEEEEEECCHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC-----
T ss_conf 69877489998278---88773345437742563089999998754686-5356699977678867530567678-----
Q ss_pred CCCCEEEEECCCEEEEEECCCCCCCC-EEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEE
Q ss_conf 89995986059805886317822785-23579999506998898999999999999999897884642011018999870
Q 004577 566 VTSPTCIIDEPLIRFWYKLDNTFKLP-RANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQASVAKLETSVSIF 644 (744)
Q Consensus 566 ~~~P~~~~~~~~~~vw~~~d~~f~~P-k~~i~~~~~~p~~~~s~~~~~~~~l~~~~l~~~l~e~~y~a~~agl~~~~~~~ 644 (744)
...|..+..++|++||+++++.|++| ++.+++.+.+|....++++.+++.|+..++.+.+.+..|.+.++|++++++.
T Consensus 497 ~~~p~~~~l~ng~~v~~~~~~~f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll~~g~~~~~~~~~l~G~~~~~~~- 575 (939)
T 1q2l_A 497 YDHPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQLSNQASVGGISFSTNA- 575 (939)
T ss_dssp CSSCEEEEEETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-
T ss_pred CCCCEEEEECCCCEEEECCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-
T ss_conf 9999799977981685557875589986799999958965589999999999999999999987527997694899960-
Q ss_pred CCEEEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 76059999824898799999999987148989889999999999998705359-26799999998505899999899987
Q 004577 645 SDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMK-PLSHSSYLRLQVLCQSFYDVDEKLSI 723 (744)
Q Consensus 645 ~~gl~l~~~G~s~kl~~l~~~i~~~l~~~~~~~~~f~~~k~~~~~~~~n~~~~-p~~~a~~~~~~ll~~~~~~~~~~~~~ 723 (744)
..|+.++++|++++++.+++.+.+.+.++.+++++|+++|+++++.++|...+ |..++.+.+..+++.++|+..+.++.
T Consensus 576 ~~g~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~l~~~~~~~p~~~a~~~l~~~l~~~~~~~~~~~~~ 655 (939)
T 1q2l_A 576 NNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSRDERRKI 655 (939)
T ss_dssp SSEEEEEEEEESSSHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHTTSSSCCCHHHHHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 89579999765676999999999997478989999999999999997634206839999999999966899999999999
Q ss_pred HCCCCHHHHHHHHHHHHHH
Q ss_conf 3139999999999999871
Q 004577 724 LHGLSLADLMAFIPELRSQ 742 (744)
Q Consensus 724 l~~it~~d~~~f~~~~~~~ 742 (744)
|++||++++.+|++++++.
T Consensus 656 l~~it~~~l~~f~~~~~~~ 674 (939)
T 1q2l_A 656 LPSITLKEVLAYRDALKSG 674 (939)
T ss_dssp GGGCCHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHH
T ss_conf 8518999999999999864
No 2
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=1.00 E-value=1 Score=771.65 Aligned_cols=675 Identities=38% Similarity=0.667 Sum_probs=607.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99975557885336978645621789278978999967998867765323589765543456755665335543344430
Q 004577 3 GNGCVWSSDEIVIKSPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDEND 82 (744)
Q Consensus 3 ~~~~~~~~~~~~~~~~~d~~~~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (744)
|+++.....+.|+||..|.+.|+.++|+|||+|++++++.. +
T Consensus 14 ~~~~~~~~~~~~~~~~~d~~~~~~~~L~NGl~v~~~~~~~~--------------~------------------------ 55 (990)
T 3cww_A 14 NNPAIKRIGNHITKSPEDKREYRGLELANGIKVLLISDPTT--------------D------------------------ 55 (990)
T ss_dssp CCTTEEEECSCCCCCTTCCCEEEEEEETTCCEEEEEECTTC--------------S------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCC--------------C------------------------
T ss_conf 88351035776657988875559999479988999978899--------------8------------------------
Q ss_pred HHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCEEEE
Q ss_conf 22310145655645537999993678888999998906999876025866799901899999963995006647980699
Q 004577 83 TEKEVKGKGIFSQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCY 162 (744)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~v~~Gs~~dp~~~~GlAhllehmlf~Gs~~~p~~~~~~~~l~~~g~~~na~t~~~~t~~ 162 (744)
+++++++|++|++.||.+.+|+|||+|||+|+||++||.+++|.++++.+||.+||+|+.|+|+|
T Consensus 56 ---------------~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA~T~~d~T~y 120 (990)
T 3cww_A 56 ---------------KSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNY 120 (990)
T ss_dssp ---------------EEEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTTCEEEEEECSSCEEE
T ss_pred ---------------CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCEEE
T ss_conf ---------------17899995525877999999739999998806887799805699999976995068988984599
Q ss_pred EEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-
Q ss_conf 9982933399999999983337899948899999899999986039969999999996189999999777677552322-
Q 004577 163 HFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIG- 241 (744)
Q Consensus 163 ~~~~~~~~l~~~l~~~~~~~~~P~~~~~~~~~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~~~L~~- 241 (744)
++++++++|+.+|+++++++.+|.|+++.|++|+.+|.+|++.+.+++.+++++.+...++++|||+++++|++++|.+
T Consensus 121 ~~~~~~~~l~~~l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~~~~~~~~~~~~~~~~~~~~~py~~~~~G~~~~l~~~ 200 (990)
T 3cww_A 121 YFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETR 200 (990)
T ss_dssp EEEEEGGGHHHHHHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTSCTTSGGGCCCSCCHHHHTHH
T ss_pred EEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHC
T ss_conf 99937899999999999998575899899999999999999855388399999999985689999634788989998402
Q ss_pred HHHCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC---CCEEEEEEEC
Q ss_conf 5314911899999999820557872899990999899999999972332478878887765533334---4208999661
Q 004577 242 AMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWK---ACKLFRLEAV 318 (744)
Q Consensus 242 ~~~~~~~~~~~l~~f~~~~Y~~~~~~lvi~G~~~~~~l~~lv~~~f~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 318 (744)
+...+..++++|++||++||+|+||+|+|+|++++++++++|+++|+.|+++..+.+.+. .+++. .+..+...+.
T Consensus 201 ~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 278 (990)
T 3cww_A 201 PNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFP--EHPFQEEHLKQLYKIVPI 278 (990)
T ss_dssp HHHTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHHHHTTSCCCCCCCCCCC--SCSSCGGGSSEEEEECCS
T ss_pred CCCCCCHHHHHHHHHHHHHCCHHHEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCHHHCCEEEEEEEC
T ss_conf 010465299999999997177866389998699999999999997137865788899888--899996780769999987
Q ss_pred CCCCEEEEEEECCCCCHHHHCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCEEEEEEEECCHH
Q ss_conf 64129999998389734441066999999963999963899998469834030212777677654322789999939010
Q 004577 319 KDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSG 398 (744)
Q Consensus 319 ~~~~~i~i~~~~p~~~~~~~~~~~~~l~~lLg~~~~~sL~~~Lr~~glay~i~~~~~~~~~~~~~~~g~f~i~~~l~~~g 398 (744)
.++..+.++|++|.....++..++.+++++||+++.++|+..||++||+|+++++...... ..|.|.|++.+++.|
T Consensus 279 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~lLg~~~~~sl~~~Lr~~g~~~~~~a~~~~~~~----~~~~f~i~~~~~~~g 354 (990)
T 3cww_A 279 KDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKAGAR----GFMFFIINVDLTEEG 354 (990)
T ss_dssp SSCCEEEEEEEECCCGGGTTTCHHHHHHHHHTCCSTTCHHHHHHHTTSCSCEEEEEEEEET----TEEEEEEEEECCHHH
T ss_pred CCCCEEEEEEECCCHHHHHHHCHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEEECCCCCCC----CCCEEEEEEEECHHH
T ss_conf 8774899999768805655558899999995699999489999877971125653566778----851799999988477
Q ss_pred HHCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 30099999999999999996399046899999985202324668890899999998647899754211353344698999
Q 004577 399 LEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEM 478 (744)
Q Consensus 399 ~~~~~~v~~~i~~~l~~l~~~g~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~i~~~t~e~ 478 (744)
.++++++++.++++|+.+++.|++++++++++......|.++...++.+++..++..+..+++++++.....+.++|+++
T Consensus 355 ~~~~~~~~~~i~~~l~~l~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~t~~~ 434 (990)
T 3cww_A 355 LLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDL 434 (990)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTTTSCGGGTTTTTTCCCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHCCCHHHHCCCHHH
T ss_conf 65499999999999999985798389999999999973666776997999999999986279999732622453189999
Q ss_pred HHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCEEECEEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999406956449999828988887863133220101210389478985339999998766899998899984012257
Q 004577 479 IKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRAND 558 (744)
Q Consensus 479 i~~~~~~l~~~n~~i~i~~p~~~~~~~~~~e~~~~~~y~~~~i~~~~~~~~~~~~~~~~~l~lP~~N~~ip~~~~i~~~~ 558 (744)
|+++++++.++++++++++|++ ....++.|+||+++|.+.++++++++.|..... .+.+.+|.+|+|+|++|.+.+..
T Consensus 435 i~~~~~~l~~~~~~~~~~~p~~-~~~~~~~e~~~~~~y~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~ip~~~~~~~~~ 512 (990)
T 3cww_A 435 IEMVLDKLRPENVRVAIVSKSF-EGKTDRTEEWYGTQYKQEAIPDAVIAKWQNAAL-NGKFKLPTKNEFIPTNFEILPLE 512 (990)
T ss_dssp HHHHHTTCSGGGCEEEEECGGG-TTCCCEECTTTCCEEEEEECCHHHHHHHHTCCC-CTTCCCCCCCTTCCCCCCCCCCC
T ss_pred HHHHHHHCCHHHEEEEEECCCC-CCCCCCCCCEECCEEEEECCCHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999984697677999973777-777673331637621562389999997645788-74556999887788665004577
Q ss_pred CCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
Q ss_conf 78887788999598605980588631782278523579999506998898999999999999999897884642011018
Q 004577 559 ISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQASVAKLE 638 (744)
Q Consensus 559 ~~~~~~~~~~P~~~~~~~~~~vw~~~d~~f~~Pk~~i~~~~~~p~~~~s~~~~~~~~l~~~~l~~~l~e~~y~a~~agl~ 638 (744)
... ...|.++...+|+++||++++.|++|++.+++.+.+|....++++.+++.|++.++.+.+++..|.+.++|++
T Consensus 513 ~~~----~~~p~~~~~~ng~~v~~~~~~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll~~~~~~~~~~~~l~G~~ 588 (990)
T 3cww_A 513 AAA----TPYPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLS 588 (990)
T ss_dssp TTC----CSSCEEEEECSSEEEEEEECSSCCCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred CCC----CCCCEEEECCCCCEEEECCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
T ss_conf 788----8999565438871675516876578868999999689777999999999999999999987864489868748
Q ss_pred EEEEEECCEEEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCCCCCH
Q ss_conf 9998707605999982489879999999998714898988999999999999870535-926799999998505899999
Q 004577 639 TSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLCQSFYDV 717 (744)
Q Consensus 639 ~~~~~~~~gl~l~~~G~s~kl~~l~~~i~~~l~~~~~~~~~f~~~k~~~~~~~~n~~~-~p~~~a~~~~~~ll~~~~~~~ 717 (744)
++++.+..|+.++++|++++++.+++++.+.+.++.+++++|+++|+++++.++|... +|+.+|.+.+..++....|..
T Consensus 589 ~~~~~~~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~~p~~~a~~~~~~~l~~~~~~~ 668 (990)
T 3cww_A 589 YDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTK 668 (990)
T ss_dssp EEEEEETTEEEEEEEEESTTHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHBSSCCCH
T ss_pred EEEEECCCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCH
T ss_conf 99997687599999842186899999999998658989999999999999998866624859999999999967899999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 8999873139999999999999871
Q 004577 718 DEKLSILHGLSLADLMAFIPELRSQ 742 (744)
Q Consensus 718 ~~~~~~l~~it~~d~~~f~~~~~~~ 742 (744)
.+.++.|++|+++++.+|++++++.
T Consensus 669 ~~~~~~l~~lt~~~l~~~~~~~~~~ 693 (990)
T 3cww_A 669 DELKEALADVTLPRLKAFIPQLLSR 693 (990)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHE
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999988529999999999999864
No 3
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=1.00 E-value=1 Score=556.90 Aligned_cols=638 Identities=13% Similarity=0.120 Sum_probs=486.9
Q ss_pred CCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCC
Q ss_conf 33697864562178927897899996799886776532358976554345675566533554334443022310145655
Q 004577 14 VIKSPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIF 93 (744)
Q Consensus 14 ~~~~~~d~~~~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (744)
...+..|.+.|+..+|+|||+|++++++.. +
T Consensus 28 ~~~~~~~~~~~~~~~l~nGl~v~~~~~~~~--------------~----------------------------------- 58 (995)
T 2fge_A 28 EFISECKSKAILFKHKKTGCEVMSVSNEDE--------------N----------------------------------- 58 (995)
T ss_dssp EEETTTTEEEEEEEETTTCCEEEEEECSCS--------------S-----------------------------------
T ss_pred EECCCCCCEEEEEEECCCCCEEEEEECCCC--------------C-----------------------------------
T ss_conf 703211545799999789988999976998--------------6-----------------------------------
Q ss_pred CCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHH-CCCCCCEEECCCEEEEEEEEC-HHHH
Q ss_conf 64553799999367888899999890699987602586679990189999996-399500664798069999829-3339
Q 004577 94 SQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSK-HGGSSNAYTETEHTCYHFEIK-REFL 171 (744)
Q Consensus 94 ~~~~~~~~~l~v~~Gs~~dp~~~~GlAhllehmlf~Gs~~~p~~~~~~~~l~~-~g~~~na~t~~~~t~~~~~~~-~~~l 171 (744)
. ++.+|++.+|.+..|+|||+|||+|+||++||..+.+.+++.. .|+.+||+|+.|+|+|++.+. .+++
T Consensus 59 ----~-----~~~vg~~~e~~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~T~~d~T~y~~~~~~~~~~ 129 (995)
T 2fge_A 59 ----K-----VFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTNTKDF 129 (995)
T ss_dssp ----E-----EEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCEECSSEEEEEEEESSHHHH
T ss_pred ----C-----EEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCEEEEEECCCHHHH
T ss_conf ----1-----7999967898699876899999971788789984679999975518874206779835999844888999
Q ss_pred HHHHHHHHHHHHCCCC--CHHHHHHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 9999999983337899--94889999---------------989999998603996999999999618999999977767
Q 004577 172 KGALMRFSQFFISPLM--KVEAMERE---------------VLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWG 234 (744)
Q Consensus 172 ~~~l~~~~~~~~~P~~--~~~~~~~e---------------~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G 234 (744)
+.+|+++++++.+|.| +++.|++| +++|.+|++++.++|.+++++.+...+|++|||+++++|
T Consensus 130 ~~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~~p~~~~~~~~~~~~~~~~py~~~~~G 209 (995)
T 2fge_A 130 YNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGRIAQQALSPENTYGVDSGG 209 (995)
T ss_dssp HHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHHHTTSHHHHHHHHHHHHHCTTSGGGSCTTC
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 99999999997587877998999876666404565543212231999987504888999999999971899988777999
Q ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCCCCCCCE-
Q ss_conf 755232253149118999999998205578728999909998999999999723324--78878887765533334420-
Q 004577 235 NKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVR--KGPQIKPQFTVEGTIWKACK- 311 (744)
Q Consensus 235 ~~~~L~~~~~~~~~~~~~l~~f~~~~Y~~~~~~lvi~G~~~~~~l~~lv~~~f~~i~--~~~~~~~~~~~~~~~~~~~~- 311 (744)
++++|.+ +++++|++||++||+|+||+|+|+||+++++++++|+++|+.|+ .+..+.+.. ..+++....
T Consensus 210 ~~~~i~~------~t~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~~i~~~f~~~~~~~~~~~~~~~--~~~~~~~~~~ 281 (995)
T 2fge_A 210 DPKDIPN------LTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDMFEASPSPNSSKIK--FQKLFSEPVR 281 (995)
T ss_dssp CTTTGGG------CCHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHHHHHTTCCCCSHHHHSCCC--CCCCCSSCEE
T ss_pred CHHHHHH------CCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCCCCCCE
T ss_conf 9676321------5899999999981884216999986999999999999998517754567776657--7778888705
Q ss_pred ---EEEE---EECCCCCEEEEEEECCCCC-HHHHCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEECC-CCCCCCCCCC
Q ss_conf ---8999---6616412999999838973-444106699999996399996389999846983403021-2777677654
Q 004577 312 ---LFRL---EAVKDVHILDLTWTLPCLH-QEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAG-VGDEGMHRSS 383 (744)
Q Consensus 312 ---~~~~---~~~~~~~~i~i~~~~p~~~-~~~~~~~~~~l~~lLg~~~~~sL~~~Lr~~glay~i~~~-~~~~~~~~~~ 383 (744)
.+.+ .+..++..+.++|++|... +..+..++.+++++||++..++|++.||++||+|+++++ +... .
T Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~vl~~~Lg~~~~S~L~~~l~e~gl~~~~~~~~~~~~-~---- 356 (995)
T 2fge_A 282 LVEKYPAGRDGDLKKKHMLCVNWLLSEKPLDLQTQLALGFLDHLMLGTPASPLRKILLESGLGEALVSSGLSDE-L---- 356 (995)
T ss_dssp EEEEEECCSSSCGGGCEEEEEEEECCSSCCCHHHHHHHHHHHHHHHSSTTSHHHHHHHHTTSCSEECSCEEECS-S----
T ss_pred EEEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEECCCCCC-C----
T ss_conf 88860567788766760899999768876798898999999999767998789999986388754265153566-6----
Q ss_pred CCCEEEEEEE-ECCHHHHCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC-CCCH--HHHHHHHHHCCC-
Q ss_conf 3227899999-3901030099999999999999996399046899999985202324668-8908--999999986478-
Q 004577 384 IAYIFVMSIH-LTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEE-QPQD--DYAAELAGNLLI- 458 (744)
Q Consensus 384 ~~g~f~i~~~-l~~~g~~~~~~v~~~i~~~l~~l~~~g~~~~~l~~~k~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~- 458 (744)
..|.|.|.+. +.+ ++++++++.++++|+.+++.|+++++++++|+.+...+..... +.+. .++..++..+..
T Consensus 357 ~~~~f~i~~~~~~~---~~~~~~~~~i~~~l~~l~~~g~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (995)
T 2fge_A 357 LQPQFGIGLKGVSE---ENVQKVEELIMDTLKKLAEEGFDNDAVEASMNTIEFSLRENNTGSFPRGLSLMLQSISKWIYD 433 (995)
T ss_dssp SSCEEEEEEEEECG---GGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCTTSCHHHHHHHHHHHHHTTT
T ss_pred CCEEEEEEEEECCH---HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 67079999994888---789999999999999998739899999999999999977415788961799999999987669
Q ss_pred CCCCCCCCCCCCCCCCCH----H----HHHHHHHC-CCCC-CEEEEEEECCCCC-CCCCCCCCEEECEEEEECCCHHHHH
Q ss_conf 997542113533446989----9----99999940-6956-4499998289888-8786313322010121038947898
Q 004577 459 YPAEHVIYGEYMYEVWDE----E----MIKHLLGF-FMPE-NMRIDVVSKSFAK-SQDFHYEPWFGSRYTEEDISPSLME 527 (744)
Q Consensus 459 ~~~~~~l~~~~~i~~~t~----e----~i~~~~~~-l~~~-n~~i~i~~p~~~~-~~~~~~e~~~~~~y~~~~i~~~~~~ 527 (744)
.++...+.....++++++ + +|++++++ +.++ +..+++++|+... ....+.|+|+...|. ..++++.++
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~e~~~l~~~~-~~~~~~~~~ 512 (995)
T 2fge_A 434 MDPFEPLKYTEPLKALKTRIAEEGSKAVFSPLIEKLILNNSHRVTIEMQPDPEKATQEEVEEKNILEKVK-AAMTEEDLA 512 (995)
T ss_dssp SCSSGGGCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTTCCCEEEEEEEEETTHHHHHHHHHHHHHHHHH-HTSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHH-HHCCHHHHH
T ss_conf 9967876459999999987507860799999999981579945899998380289999999999999998-738999999
Q ss_pred ----------HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCEEEEEE
Q ss_conf ----------5339999998766899998899984012257788877889995986059805886317822785235799
Q 004577 528 ----------LWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYF 597 (744)
Q Consensus 528 ----------~~~~~~~~~~~l~lP~~N~~ip~~~~i~~~~~~~~~~~~~~P~~~~~~~~~~vw~~~d~~f~~Pk~~i~~ 597 (744)
.|+.... .+ ....++|... +.+.... ....|......+|++||++++ |..|.+++.+
T Consensus 513 ~~~~~~~~l~~~~~~~~-~~-----~~~~~~p~~~-~~~i~~~----~~~~~~~~~~~nG~~v~~~~~--~~~~~v~~~~ 579 (995)
T 2fge_A 513 ELARATEELKLKQETPD-PP-----EALRCVPSLN-LGDIPKE----PTYVPTEVGDINGVKVLRHDL--FTNDIIYTEV 579 (995)
T ss_dssp HHHHHHHHHHHHHTSCC-CH-----HHHTTSCCCC-GGGSCSS----CCCCCCEEEESSSSEEEEEEC--CCSSEEEEEE
T ss_pred HHHHHHHHHHHHHCCCC-CH-----HHHHHCCCCC-HHHCCCC----CCCCCCEEEECCCCEEEEEEC--CCCCEEEEEE
T ss_conf 99999999999855899-86-----7887447799-7666766----787884356408924999866--9898699999
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHH-HHHHHH-------HHHHCCEEE-EE--EEEC-----CEEEEEEEECCCCHHH
Q ss_conf 995069988989999999999999998-978846-------420110189-99--8707-----6059999824898799
Q 004577 598 RINLKGGYDNVKNCILTELFIHLLKDE-LNEIIY-------QASVAKLET-SV--SIFS-----DKLELKVYGFNDKLPV 661 (744)
Q Consensus 598 ~~~~p~~~~s~~~~~~~~l~~~~l~~~-l~e~~y-------~a~~agl~~-~~--~~~~-----~gl~l~~~G~s~kl~~ 661 (744)
.+.. ...++....++.|++.++.+. .....| .+..+|+++ ++ +... .++.+++++++++++.
T Consensus 580 ~~~~--~~~~~~~~~~~~l~~~~l~~~Gt~~~s~~el~~~l~~~~ggl~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~ 657 (995)
T 2fge_A 580 VFDI--GSLKHELLPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVYPLTSSVRGKDEPCSKIIVRGKSMAGRADD 657 (995)
T ss_dssp EEEC--TTSCTTTGGGHHHHHHHHHHSCCSSSCHHHHHHHHHHHSSEEEEEEEEEEETTEEEEEEEEEEEEEEEGGGHHH
T ss_pred EEEC--CCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEEEEEEEEEHHHHHH
T ss_conf 9617--88997883437999999984899888899999999973176484114546676545562699999983641999
Q ss_pred HHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHCCCCCC------------HHHHH----HH
Q ss_conf 99999998714898988-9999999999998705359-2679999999850589999------------98999----87
Q 004577 662 LLSKILAIAKSFLPSDD-RFKVIKEDVVRTLKNTNMK-PLSHSSYLRLQVLCQSFYD------------VDEKL----SI 723 (744)
Q Consensus 662 l~~~i~~~l~~~~~~~~-~f~~~k~~~~~~~~n~~~~-p~~~a~~~~~~ll~~~~~~------------~~~~~----~~ 723 (744)
+++++.+.+.++.|+++ +|+++|++++..+++...+ ++..|...+..++.+..+- ..+.. +.
T Consensus 658 ~l~ll~e~l~~p~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~gl~~~~~~~~l~~~~~e~ 737 (995)
T 2fge_A 658 LFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAMLNIAGWMSEQMGGLSYLEFLHTLEKKVDED 737 (995)
T ss_dssp HHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCHHHHHHHHHHSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHCC
T ss_conf 99999999973888918999999999998788754426999999999873794689999973599999999999865418
Q ss_pred HCCCCHHHHHHHHHHHHHH
Q ss_conf 3139999999999999871
Q 004577 724 LHGLSLADLMAFIPELRSQ 742 (744)
Q Consensus 724 l~~it~~d~~~f~~~~~~~ 742 (744)
++.| .+++.+|++++|..
T Consensus 738 ~~~i-~~~L~~~~~~~~~~ 755 (995)
T 2fge_A 738 WEGI-SSSLEEIRRSLLAR 755 (995)
T ss_dssp HHHH-HHHHHHHHHHHCCS
T ss_pred HHHH-HHHHHHHHHHHCCC
T ss_conf 9999-99999999997286
No 4
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=1.00 E-value=1 Score=495.69 Aligned_cols=652 Identities=13% Similarity=0.102 Sum_probs=459.9
Q ss_pred CCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCC
Q ss_conf 69786456217892789789999679988677653235897655434567556653355433444302231014565564
Q 004577 16 KSPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQ 95 (744)
Q Consensus 16 ~~~~d~~~~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (744)
.+..+.+.|+...|+||++|++++++.. +
T Consensus 79 ~p~~~~~~~~~~~l~nGl~vl~i~~~~~--------------~------------------------------------- 107 (1193)
T 3s5m_A 79 NEEFKMTYTVYQHKKAKTQVISLGTNDP--------------L------------------------------------- 107 (1193)
T ss_dssp ETTTTEEEEEEEETTTCCEEEEEEECCT--------------T-------------------------------------
T ss_pred CCCCCCCCEEEEECCCCCEEEEEECCCC--------------C-------------------------------------
T ss_conf 8876665269999799988999998998--------------7-------------------------------------
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHH--CCCCCCEEECCCEEEEEEEECH-HHHH
Q ss_conf 553799999367888899999890699987602586679990189999996--3995006647980699998293-3399
Q 004577 96 TKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSK--HGGSSNAYTETEHTCYHFEIKR-EFLK 172 (744)
Q Consensus 96 ~~~~~~~l~v~~Gs~~dp~~~~GlAhllehmlf~Gs~~~p~~~~~~~~l~~--~g~~~na~t~~~~t~~~~~~~~-~~l~ 172 (744)
.+. .++.+|+..+|.+..|+||++|||+|+||++||.. ++...+.. .|+.+||+|+.|+|+|++++.+ ++|+
T Consensus 108 --~~~--~~f~vg~~tep~~~~GvAH~lEHmlf~GS~k~p~~-e~~~~l~~~slG~~lNA~T~~D~T~Y~~~~~~~~~l~ 182 (1193)
T 3s5m_A 108 --DVE--QAFAFYVKTLTHSGKGIPHILEHSVLSGSKNYNYK-NSIGLLEKGTLHTHLNAYTFNDRTVYMAGSMNNKDFF 182 (1193)
T ss_dssp --CCC--EEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCCT-THHHHHHHSCCEEEEEEEECSSEEEEEEEESSHHHHH
T ss_pred --EEE--EEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHH-HHHHHHHHHCCCCEEEEEECCCEEEEEEEECCHHHHH
T ss_conf --078--99999978999997119999999983799898856-6999999754482487687687599999945788899
Q ss_pred HHHHHHHHHHHCCCCCHHH--HHHH-----------------------------HHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9999999833378999488--9999-----------------------------98999999860399699999999961
Q 004577 173 GALMRFSQFFISPLMKVEA--MERE-----------------------------VLAVDSEFNQALQNDACRLQQLQCHT 221 (744)
Q Consensus 173 ~~l~~~~~~~~~P~~~~~~--~~~e-----------------------------~~~v~~E~~~~~~~~~~~~~~~~~~~ 221 (744)
.+|++++|++.+|.|+++. |.+| +++|.+|+++..++|..++++.+...
T Consensus 183 ~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV~~E~k~~~~~p~~~~~~~l~~~ 262 (1193)
T 3s5m_A 183 NIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIVYNEMKGALSSPLEDLYHEEMKY 262 (1193)
T ss_dssp HHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99999999985878763211022456665431110011012222222210045899999999975589999999999998
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCC---C
Q ss_conf 8999999977767755232253149118999999998205578728999909998999999999723324788788---8
Q 004577 222 SQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIK---P 298 (744)
Q Consensus 222 ~~~~hp~~~~~~G~~~~L~~~~~~~~~~~~~l~~f~~~~Y~~~~~~lvi~G~~~~~~l~~lv~~~f~~i~~~~~~~---~ 298 (744)
+|++|||+++++|++++|.+ +++++|++||++||+|+||+|+++||++++++.++++++|+.|+.+.... .
T Consensus 263 lf~~hpY~~~~~G~~e~I~~------lt~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~~~v~~~f~~~~~~~~~~~~~~ 336 (1193)
T 3s5m_A 263 MFPDNVHSNNSGGDPKEITN------LTYEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNFVDQYLGQLDYSKYRDDAVE 336 (1193)
T ss_dssp HCTTSGGGSCTTCCHHHHTT------CCHHHHHHHHHHHSCTTTCEEEEEESSCTHHHHHHHHHHHTTCCGGGCCCCCCC
T ss_pred HCCCCCCCCCCCCCHHHHHH------CCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 57999998899999999851------899999999998609566699999268899999999998605887777766666
Q ss_pred CCCCCCCCCCCCEEEEEE----ECCCCCEEEEEEECCCC----CH-----------------------------HHHCCH
Q ss_conf 776553333442089996----61641299999983897----34-----------------------------441066
Q 004577 299 QFTVEGTIWKACKLFRLE----AVKDVHILDLTWTLPCL----HQ-----------------------------EYLKKS 341 (744)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~----~~~~~~~i~i~~~~p~~----~~-----------------------------~~~~~~ 341 (744)
... ..+++...+.+... +...+..+.++|++|.. .+ ..+..+
T Consensus 337 ~~~-~~~~~~~~~~v~~~~~~~~~~~q~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~d~~a 415 (1193)
T 3s5m_A 337 SVE-YQTYKKGPFYIKKKYGDHSEEKENLVSVAWLLNPKVDKTNNHNNNHSNNQSSENNGYSNGSHSSDLSLENPTDYFV 415 (1193)
T ss_dssp CCC-CCBCCCCCEEEEEEEECCCSSCCEEEEEEEESSCBCC----------------------CCCCSTTCCCSHHHHHH
T ss_pred CCC-CCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 667-7787788869999468999865138999998267544444532234431000111112332111224568627999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCEEE-CCCCCCCCCCCCCCCEEEEEEEECCHH------HHCH-HHHHHHHHHHH
Q ss_conf 999999963999963899998469834030-212777677654322789999939010------3009-99999999999
Q 004577 342 EDYLAHLLGHEGRGSLHSFLKGRGWATSIS-AGVGDEGMHRSSIAYIFVMSIHLTDSG------LEKI-FDIIGFVYQYI 413 (744)
Q Consensus 342 ~~~l~~lLg~~~~~sL~~~Lr~~glay~i~-~~~~~~~~~~~~~~g~f~i~~~l~~~g------~~~~-~~v~~~i~~~l 413 (744)
+.+++++||++..++|++.||++||+|+++ +++.... ..+.|.|.+...+.+ .+++ +++.+.|.++|
T Consensus 416 l~vL~~iLggg~sSrL~~~L~e~gLa~~v~~~~~~~~~-----~~~~f~i~~~g~~~~~~~~~~~~~~~~~~~~~I~~~L 490 (1193)
T 3s5m_A 416 LLIINNLLIHTPESVLYKALTDCGLGNNVIDRGLNDSL-----VQYIFSIGLKGIKRNNEKIKNFDKVHYEVEDVIMNAL 490 (1193)
T ss_dssp HHHHHHHHHSSTTSHHHHHHHHHCSCSEEEEEEEECSS-----SSCEEEEEEEEECTTCTTCSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCEEEECCCCCCCCC-----CCCEEEEEEECCCHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999997799987799999966980354665456556-----7868999996578343145310248999999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHH--HHHHHHHH-CCCCCCCCCCCCCCCCCCCC------HHHHHHHHH
Q ss_conf 9999639904689999998520232466889089--99999986-47899754211353344698------999999994
Q 004577 414 KLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDD--YAAELAGN-LLIYPAEHVIYGEYMYEVWD------EEMIKHLLG 484 (744)
Q Consensus 414 ~~l~~~g~~~~~l~~~k~~~~~~~~~~~~~~~~~--~~~~l~~~-~~~~~~~~~l~~~~~i~~~t------~e~i~~~~~ 484 (744)
++++++|+++++++++++..+..++......+.. +...++.. ++..+|...+.....++.+. +.+++++++
T Consensus 491 ~~l~~~gi~~~ele~a~~~le~~~re~~~~~~~gl~~~~~~~~~w~~~~dp~~~l~~~~~l~~l~~~~~~~~~~~~~li~ 570 (1193)
T 3s5m_A 491 KKVVKEGFNKSAVEASINNIEFILKEANLKTSKSIDFVFEMTSKLNYNRDPLLIFEFEKYLNIVKNKIKNEPMYLEKFVE 570 (1193)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHTTCCTTTTTSHHHHHHHHHHHHHHSTTHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 99987298999999999999998775137997099999998788780799899877899999999986108499999999
Q ss_pred C-CCCCCE-EEEEEECCCC-CCCCCCCCCEEECEEEEECCCHH----------HHHHHCCCCC------CCCCCC---CC
Q ss_conf 0-695644-9999828988-88786313322010121038947----------8985339999------998766---89
Q 004577 485 F-FMPENM-RIDVVSKSFA-KSQDFHYEPWFGSRYTEEDISPS----------LMELWRNPPE------IDVSLQ---LP 542 (744)
Q Consensus 485 ~-l~~~n~-~i~i~~p~~~-~~~~~~~e~~~~~~y~~~~i~~~----------~~~~~~~~~~------~~~~l~---lP 542 (744)
+ |..++. .++++.|+.. ..+..+.|+ -..+-.+..++++ .+++|++... ..|.|. +|
T Consensus 571 ~yll~n~~~~~~~~~P~~~~~~~~~~~e~-~~L~~~~~~ls~~~~~~i~~~~~~L~~~q~~~~~~e~l~~lP~l~~~Di~ 649 (1193)
T 3s5m_A 571 KHFINNAHRSVILLEGDENYAQEQENLEK-QELKKRIENFNEQEKEQVIKNFEELSKYKNAEESPEHLNKFPIISISDLN 649 (1193)
T ss_dssp HHTTTCCCEEEEEEEEESSHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHTTSCCCCGGGSC
T ss_pred HHHCCCCCEEEEEEECCCCHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHCC
T ss_conf 98334996389999728877789999999-99999986389999999999999999987377975469747847098768
Q ss_pred CCCCCCCCCC---C-------CCC---------------------CCCCCCC-CCC-----CCCEE-----EEECCCEEE
Q ss_conf 9998899984---0-------122---------------------5778887-788-----99959-----860598058
Q 004577 543 SQNEFIPTDF---S-------IRA---------------------NDISNDL-VTV-----TSPTC-----IIDEPLIRF 580 (744)
Q Consensus 543 ~~N~~ip~~~---~-------i~~---------------------~~~~~~~-~~~-----~~P~~-----~~~~~~~~v 580 (744)
+..+.+|... . +.. .....+. ... ..+.. ....+|+.+
T Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v 729 (1193)
T 3s5m_A 650 KKTLEVPVNVYFTNINENNNIMETYNKLKTNEHMLKDNMDVFLKKYVLKNDKHNTNNNNNNNNNMDYSFTETKYEGNVPI 729 (1193)
T ss_dssp SSCCCCCCEEEEECTTTCSCHHHHHHHHHTCHHHHHHHHHHHHHHHTTC---------------------CCTTTTCEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 87666763011222221122100011111111112221100000000122222223222223322222211134498379
Q ss_pred EEECCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH--------HHHHHHHCCEEEEEEEE--------
Q ss_conf 86317822785235799995069988989999999999999998978--------84642011018999870--------
Q 004577 581 WYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNE--------IIYQASVAKLETSVSIF-------- 644 (744)
Q Consensus 581 w~~~d~~f~~Pk~~i~~~~~~p~~~~s~~~~~~~~l~~~~l~~~l~e--------~~y~a~~agl~~~~~~~-------- 644 (744)
|++... . ++.+|+++.++....+.+...++.||+.++.....+ .......+|++++....
T Consensus 730 ~~~~~~--T--NGIvY~~l~fdl~~l~~e~l~yl~Lf~~~L~~lGT~~~sy~el~~~i~~~tGGis~s~~~~~~~~~~~~ 805 (1193)
T 3s5m_A 730 LVYEMP--T--TGIVYLQFVFSLDHLTVDELAYLNLFKTLILENKTNKRSSEDFVILREKNIGSMSANVALYSKDDHLNV 805 (1193)
T ss_dssp EEEECC--C--TTEEEEEEEEECTTCCHHHHTTHHHHHHHTTTCCBSSSCHHHHHHHHHHHCSEEEEEEEEECCCBTTBC
T ss_pred EEEECC--C--CCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCC
T ss_conf 999879--9--986999999879999978875699999999847999999999999999858855887665036554455
Q ss_pred ------CCEEEEEEEECCCCHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHCCCCC-
Q ss_conf ------76059999824898799999999987148989-889999999999998705359-267999999985058999-
Q 004577 645 ------SDKLELKVYGFNDKLPVLLSKILAIAKSFLPS-DDRFKVIKEDVVRTLKNTNMK-PLSHSSYLRLQVLCQSFY- 715 (744)
Q Consensus 645 ------~~gl~l~~~G~s~kl~~l~~~i~~~l~~~~~~-~~~f~~~k~~~~~~~~n~~~~-p~~~a~~~~~~ll~~~~~- 715 (744)
...+.++..+++++++.++.++.+.+.++.|+ .+|+..++.+.+.++++...+ ++..|+..+...+....+
T Consensus 806 ~~~~~~~~~~~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~~i~~sGH~~A~~ra~s~~s~~~~~ 885 (1193)
T 3s5m_A 806 TDKYNAQALFNLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFSEKGYAILMKYVKAHLNSKHYA 885 (1193)
T ss_dssp CCTTCCEEEEEEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTTTTCHHHHH
T ss_pred CCCCCCCCEEEEEEEEHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHH
T ss_conf 66556564699999974426999999999998579999689999999999998873142466899999999864750223
Q ss_pred ----CHHHHHHHH-----------CCCCHHHHHHHHHHHHH
Q ss_conf ----998999873-----------13999999999999987
Q 004577 716 ----DVDEKLSIL-----------HGLSLADLMAFIPELRS 741 (744)
Q Consensus 716 ----~~~~~~~~l-----------~~it~~d~~~f~~~~~~ 741 (744)
...+.+..| +.| .++|..+++++|+
T Consensus 886 ~e~~~Gl~~~~fl~~l~~~~e~~~~~l-~~~L~~i~~~if~ 925 (1193)
T 3s5m_A 886 HNIIYGYENYLKLQEQLELAENDFKTL-ENILVRIRNKIFN 925 (1193)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCC
T ss_conf 442078579999999998667559999-9999999999818
No 5
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=1.00 E-value=1 Score=458.15 Aligned_cols=400 Identities=20% Similarity=0.209 Sum_probs=349.2
Q ss_pred CCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEE
Q ss_conf 21789278978999967998867765323589765543456755665335543344430223101456556455379999
Q 004577 24 YRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQTKKAAAAM 103 (744)
Q Consensus 24 ~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 103 (744)
++..+|+|||+|++++++.. + .+++++
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~--------------~---------------------------------------~~~~~l 28 (406)
T 3eoq_A 2 FREAELRNGLRVIAEVVPGA--------------R---------------------------------------SVALGY 28 (406)
T ss_dssp EEEEECTTSCEEEEEECTTC--------------S---------------------------------------CEEEEE
T ss_pred CEEEECCCCCEEEEEECCCC--------------C---------------------------------------EEEEEE
T ss_conf 64698689998999987999--------------7---------------------------------------699999
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCEEEEEEEECHHHHHHHHHHHHHHHH
Q ss_conf 93678888999998906999876025866799901899999963995006647980699998293339999999998333
Q 004577 104 CVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFI 183 (744)
Q Consensus 104 ~v~~Gs~~dp~~~~GlAhllehmlf~Gs~~~p~~~~~~~~l~~~g~~~na~t~~~~t~~~~~~~~~~l~~~l~~~~~~~~ 183 (744)
++++|+++||++..|+|||+|||+|+||++||. .++.+.++.+||.+||+|+.++|+|++++++++++.+|+++++++
T Consensus 29 ~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~-~~~~~~l~~~G~~~na~t~~d~t~y~~~~~~~~l~~~l~ll~d~~- 106 (406)
T 3eoq_A 29 FVKTGARDETKEESGVSHFLEHMVFKGPEDMDA-LAVNRAFDRMGAQYNAFTSEEATVYYGAVLPEFAYDLLGLFAKLL- 106 (406)
T ss_dssp EESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCH-HHHHHHHHHTTCEEEEEECSSCEEEEEEECGGGHHHHHHHHHHHT-
T ss_pred EECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCH-HHHHHHHHHHCCCCCCEECCCEEEEEEEECHHHHHHHHHHHHHHH-
T ss_conf 985425788999888999999987179999998-999999998488735264477489999955788999999999985-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf 78999488999998999999860399699999999961899999997776775523225314911899999999820557
Q 004577 184 SPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQG 263 (744)
Q Consensus 184 ~P~~~~~~~~~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~~~L~~~~~~~~~~~~~l~~f~~~~Y~~ 263 (744)
+|.|+++.|++|++++.+|++...++|.+++.+.+...+|++|||+++.+|+.++|.+ ++.++|++||++||+|
T Consensus 107 ~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i~~------~t~~~l~~f~~~~y~p 180 (406)
T 3eoq_A 107 RPALREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRESITA------LTREGMAAYHRRRYLP 180 (406)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCHHHHHH------CCHHHHHHHHHHHCCG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH------CCHHHHHHHHHHHCCC
T ss_conf 6899989999999999999987429978999999999843899998888689999963------8999999999984886
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC-CCCEEEEEEECCCCCHHHHCCHH
Q ss_conf 87289999099989999999997233247887888776553333442089996616-41299999983897344410669
Q 004577 264 GLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVK-DVHILDLTWTLPCLHQEYLKKSE 342 (744)
Q Consensus 264 ~~~~lvi~G~~~~~~l~~lv~~~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~~~~p~~~~~~~~~~~ 342 (744)
+||+|+|+|+++++++.++++++|+.|+.++.+.+ . + +....++.+.+.... .+..+.++|+.|...+. +..++
T Consensus 181 ~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~-~--~-~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~-d~~~l 255 (406)
T 3eoq_A 181 KNMVLAATGRVDFDRLLAEAERLTEAWPEGEAERA-Y--P-PLTPAFGVEERPYEKARALYLVALFPGVAYQEE-ARFPG 255 (406)
T ss_dssp GGEEEEEEESCCHHHHHHHHHHHHTTCCCCCCCCC-C--C-CCCCCCEEEEEECTTCSSEEEEEEEECCCTTCT-THHHH
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCC-C--C-CCCCCCCEEEEECCCCCCEEEEEEECCCCCCCC-HHHHH
T ss_conf 67799998489999999999998357887888988-8--9-878888469983687350589999447998881-19999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCEEEEEEEECCHHHHCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999963999963899998469834030212777677654322789999939010300999999999999999963990
Q 004577 343 DYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQ 422 (744)
Q Consensus 343 ~~l~~lLg~~~~~sL~~~Lr~~glay~i~~~~~~~~~~~~~~~g~f~i~~~l~~~g~~~~~~v~~~i~~~l~~l~~~g~~ 422 (744)
.+++.+||+++.++|+..||++||+|+++++.... .+.|.|.|++.+.+ ++.+++++.+.++|+.++++|++
T Consensus 256 ~vl~~iLgg~~~srL~~~lre~gl~y~~~s~~~~~-----~~~g~~~i~~~~~~---~~~~~~~~~i~~~l~~l~~~~~t 327 (406)
T 3eoq_A 256 QVLAHLLGEEGSGRLHFALVDKGLAEVASFGLEEA-----DRAGTFHAYVQADP---ARKGEVLAVLQEELDRLGREGVG 327 (406)
T ss_dssp HHHHHHHHCTTTSHHHHHTTTTTSEEEEEEEEEEC-----SSCEEEEEEEEECG---GGHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHCCCCCHHHHHHHHHCCCEEEEEEEECCC-----CCCEEEEEEEEECC---CHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999967996248899999759746999874056-----78637999998473---32999999999999999857999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHC-CCCCCEEEEEEECC
Q ss_conf 468999999852023246688908999999986478-997542113533446989999999940-69564499998289
Q 004577 423 KWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLI-YPAEHVIYGEYMYEVWDEEMIKHLLGF-FMPENMRIDVVSKS 499 (744)
Q Consensus 423 ~~~l~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~l~~~~~i~~~t~e~i~~~~~~-l~~~n~~i~i~~p~ 499 (744)
+++++++|+.+..++....+ ++...+..++..... .++.........++++|+++|++++++ +.++++ ++++||.
T Consensus 328 ~~el~~ak~~l~~~~~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~-~~vvGp~ 404 (406)
T 3eoq_A 328 EEEVERAKTPLATGLVFAGE-TPMQRLFHLGMEYLYTGRYLSLEEVKARVQRVTSREVNALLERGFLEKGL-YYLVLPH 404 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHCCHHHHHHHHHTTTTTSCE-EEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCE-EEEECCC
T ss_conf 99999999999977877347-89999999999999669989999999999828999999999986585667-9997898
No 6
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=1.00 E-value=1 Score=456.67 Aligned_cols=412 Identities=13% Similarity=0.145 Sum_probs=355.6
Q ss_pred CCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEE
Q ss_conf 56217892789789999679988677653235897655434567556653355433444302231014565564553799
Q 004577 22 RLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQTKKAAA 101 (744)
Q Consensus 22 ~~~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (744)
..++.++|+|||+|++++++.. + .+.+
T Consensus 5 ~~~~~~~L~NGl~v~~~~~~~~--------------~---------------------------------------~v~~ 31 (445)
T 3ami_A 5 ASTFETTLPNGLKVVVREDHRA--------------P---------------------------------------TLVH 31 (445)
T ss_dssp GGEEEEECTTSCEEEEEECTTS--------------S---------------------------------------EEEE
T ss_pred CCCEEEECCCCCEEEEEECCCC--------------C---------------------------------------EEEE
T ss_conf 6717999799998999977999--------------8---------------------------------------6999
Q ss_pred EEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCEEEEEEEECHHHHHHHHHHHHHH
Q ss_conf 99936788889999989069998760258667999018999999639950066479806999982933399999999983
Q 004577 102 AMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQF 181 (744)
Q Consensus 102 ~l~v~~Gs~~dp~~~~GlAhllehmlf~Gs~~~p~~~~~~~~l~~~g~~~na~t~~~~t~~~~~~~~~~l~~~l~~~~~~ 181 (744)
++++++|+..||.+..|+||++|||+|+||++||. .++.+.++.+||.+||+|+.+.|+|++++++++++.+|++++++
T Consensus 32 ~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~-~~l~~~l~~~g~~~na~t~~d~t~y~~~~~~~~l~~~l~ll~d~ 110 (445)
T 3ami_A 32 MVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGP-GEFSKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVMGLEADR 110 (445)
T ss_dssp EEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCT-THHHHHHHHTTCEEEEEECSSCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCH-HHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHH
T ss_conf 99984556788988953899998701089988987-78999999829863301479857999978889999999999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 33789994889999989999998-60399699999999961899999997776775523225314911899999999820
Q 004577 182 FISPLMKVEAMEREVLAVDSEFN-QALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNY 260 (744)
Q Consensus 182 ~~~P~~~~~~~~~e~~~v~~E~~-~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~~~L~~~~~~~~~~~~~l~~f~~~~ 260 (744)
+.+|.|+++.|++|++++.+|++ ...++|..++.+.+...+|++|||+++.+|+.++|.+ ++.++|++||++|
T Consensus 111 ~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~l~~------it~~~l~~f~~~~ 184 (445)
T 3ami_A 111 MANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGWMNDIQN------MTAQDVRDWYKRW 184 (445)
T ss_dssp HHCBCCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTCCHHHHHH------CCHHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH------CCHHHHHHHHHHH
T ss_conf 6189999899999999999999854458847999999999860589877998889999865------7999999999971
Q ss_pred CCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCC---CCHHH
Q ss_conf 557872899990999899999999972332478878887765533334420899966164129999998389---73444
Q 004577 261 YQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPC---LHQEY 337 (744)
Q Consensus 261 Y~~~~~~lvi~G~~~~~~l~~lv~~~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~p~---~~~~~ 337 (744)
|+|+||+|+|+||++++++.++++++|+.||.+..+.+... ..+.....+.+.+.....+..+.++|+.|. ..+..
T Consensus 185 y~p~n~~l~vvGd~d~~~~~~~v~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~ 263 (445)
T 3ami_A 185 YGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQ-GEPQQAGVRRVTVKAPAELPYLALAWHVPAIVDLDKSR 263 (445)
T ss_dssp CSGGGEEEEEEESCCHHHHHHHHHHTGGGSCCCCCCCCCCC-CCCCCCSCEEEEEEEECSSCEEEEEEEECCCSSTTCCH
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCH
T ss_conf 88556699998289999999999998437988889987778-89887786589985687763799999768721256883
Q ss_pred HCCHHHHHHHHHCCCCCCHHHHHHH-HCCCCCEEECCCCCCCCCCCCCCCEEEEEEEECCHHHHCHHHHHHHHHHHHHHH
Q ss_conf 1066999999963999963899998-469834030212777677654322789999939010300999999999999999
Q 004577 338 LKKSEDYLAHLLGHEGRGSLHSFLK-GRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLL 416 (744)
Q Consensus 338 ~~~~~~~l~~lLg~~~~~sL~~~Lr-~~glay~i~~~~~~~~~~~~~~~g~f~i~~~l~~~g~~~~~~v~~~i~~~l~~l 416 (744)
+..++.+++.+||++..++|+..|| ++||+|+++++......+ ..|.|.|++.+.+. .+++++++.+.++|+.+
T Consensus 264 ~~~~~~vl~~iLg~~~~srL~~~lre~~gl~y~v~~~~~~~~~~---~~g~~~i~~~~~~~--~~~~~~~~~i~~~l~~l 338 (445)
T 3ami_A 264 DAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAGYDSLSRG---QQGLFILEGVPSKG--VTIAQLETDLRAQVRDI 338 (445)
T ss_dssp HHHHHHHHHHHHHSSTTCHHHHHTTTTSCCEEEEEEECCCCCSS---CCEEEEEEEEECTT--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCC---CCCEEEEEEEECCC--CCHHHHHHHHHHHHHHH
T ss_conf 29999999999807723578999852588579998501233457---89759999997999--99999999999999999
Q ss_pred HHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHC-CCCCCEEEE
Q ss_conf 9639904689999998520232466889089999999864789-97542113533446989999999940-695644999
Q 004577 417 RQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIY-PAEHVIYGEYMYEVWDEEMIKHLLGF-FMPENMRID 494 (744)
Q Consensus 417 ~~~g~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~l~~~~~i~~~t~e~i~~~~~~-l~~~n~~i~ 494 (744)
++.|+++++++++|+.+..++....+ ++..++..++...... ++.........++++|+++|++++++ |.++++.++
T Consensus 339 ~~~g~t~~el~~ak~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~ 417 (445)
T 3ami_A 339 AAKGVTEAELSRVKSQMVAGKVYEQD-SLMGQATQIGGLEVLGLSWRDDDRFYQQLRSVTAAEVKAAAARLLTDDTLTVA 417 (445)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHTTTCCTTHHHHHHHHHHTCCHHHHHHHHHTTSCSTTEEEE
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 85398999999999999999999744-78999999999998179867899999999749999999999997185773999
Q ss_pred EEECCC
Q ss_conf 982898
Q 004577 495 VVSKSF 500 (744)
Q Consensus 495 i~~p~~ 500 (744)
+++|..
T Consensus 418 ~~~p~~ 423 (445)
T 3ami_A 418 NLVPLP 423 (445)
T ss_dssp EEEEEC
T ss_pred EECCCC
T ss_conf 975676
No 7
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=1.00 E-value=1 Score=440.89 Aligned_cols=401 Identities=16% Similarity=0.175 Sum_probs=348.3
Q ss_pred CCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEE
Q ss_conf 21789278978999967998867765323589765543456755665335543344430223101456556455379999
Q 004577 24 YRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQTKKAAAAM 103 (744)
Q Consensus 24 ~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 103 (744)
|+..+|+|||+|++++++.. + .+++.+
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~--------------~---------------------------------------~~~~~l 28 (421)
T 3hdi_A 2 INTMTLDNGVRIITEKMSTV--------------R---------------------------------------SVSIGI 28 (421)
T ss_dssp CEEEECTTSCEEEEEECTTC--------------S---------------------------------------EEEEEE
T ss_pred CEEEECCCCCEEEEEECCCC--------------C---------------------------------------EEEEEE
T ss_conf 66798699988999987999--------------7---------------------------------------799999
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCEEEEEEEECHHHHHHHHHHHHHHHH
Q ss_conf 93678888999998906999876025866799901899999963995006647980699998293339999999998333
Q 004577 104 CVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFI 183 (744)
Q Consensus 104 ~v~~Gs~~dp~~~~GlAhllehmlf~Gs~~~p~~~~~~~~l~~~g~~~na~t~~~~t~~~~~~~~~~l~~~l~~~~~~~~ 183 (744)
++++|+++||.+..|+|||+|||+|.||++++. .++.+.++.+||.+||+|+.+.|+|++++++++++.+|+++++++.
T Consensus 29 ~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~-~~~~~~l~~~G~~~na~t~~d~t~~~~~~~~~~l~~~l~ll~d~~~ 107 (421)
T 3hdi_A 29 WVGTGSRYESAEENGISHFLEHMFFKGTNTRSA-QEIAEFFDSIGGQVNAFTSKEYTCYYAKVLDDHAGQAIDTLSDMFF 107 (421)
T ss_dssp EESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBH-HHHHHHHHTTTSCEEEEECSSCEEEEEEEEGGGHHHHHHHHHHHHH
T ss_pred EECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCH-HHHHHHHHHHCCCEEEEECCCEEEEEEEECHHHHHHHHHHHHHHHH
T ss_conf 982345788999886799999986279899999-9999999984881202435656999999648779999999999986
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf 78999488999998999999860399699999999961899999997776775523225314911899999999820557
Q 004577 184 SPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQG 263 (744)
Q Consensus 184 ~P~~~~~~~~~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~~~L~~~~~~~~~~~~~l~~f~~~~Y~~ 263 (744)
+|.|+++.|++|++++.+|++...++|..++.+.+...+|++|||+++..|+.++|.+ ++.++|++||++||+|
T Consensus 108 ~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~------it~~~l~~f~~~~y~p 181 (421)
T 3hdi_A 108 HSTFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVETLNS------FNEGMLRHYMDRFYTG 181 (421)
T ss_dssp SBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCCHHHHHH------CCHHHHHHHHHHHSST
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH------CCHHHHHHHHHHHCCC
T ss_conf 8999989999999999999987568888999999999824899999988689899975------9999999999984484
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCHHHHCCHHH
Q ss_conf 87289999099989999999997233247887888776553333442089996616412999999838973444106699
Q 004577 264 GLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPCLHQEYLKKSED 343 (744)
Q Consensus 264 ~~~~lvi~G~~~~~~l~~lv~~~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~p~~~~~~~~~~~~ 343 (744)
+||+|+|+|+++ +++.++++++|+.|+.+..+.+ . ..+.. .+..+...+..++..+.++|+.+.... .+..++.
T Consensus 182 ~n~~l~v~Gd~~-~~~~~~v~~~f~~~~~~~~~~~-~--~~~~~-~~~~~~~~~~~~q~~v~~~~~~~~~~~-~d~~~l~ 255 (421)
T 3hdi_A 182 DYVVISVAGNVH-DELIDKIKETFSQVKPTTYNYQ-G--EKPMF-LPNRIVRKKETEQAHLCLGYPGLPIGD-KDVYALV 255 (421)
T ss_dssp TTEEEEEEESCC-HHHHHHHHHHTTSSCCCCCCCC-C--CCCCC-CCCEEEEECCCSEEEEEEEEECCCTTC-TTHHHHH
T ss_pred CCEEEEEEECCC-HHHHHHHHHHHCCCCCCCCCCC-C--CCCCC-CCCEEEECCCCCCEEEEEEEECCCCCC-CHHHHHH
T ss_conf 667999980887-9999999998368888888878-8--98877-885388607888458999976699898-1699999
Q ss_pred HHHHHHCCCCCCHHHHHHH-HCCCCCEEECCCCCCCCCCCCCCCEEEEEEEECCHHHHCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999963999963899998-469834030212777677654322789999939010300999999999999999963990
Q 004577 344 YLAHLLGHEGRGSLHSFLK-GRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQ 422 (744)
Q Consensus 344 ~l~~lLg~~~~~sL~~~Lr-~~glay~i~~~~~~~~~~~~~~~g~f~i~~~l~~~g~~~~~~v~~~i~~~l~~l~~~g~~ 422 (744)
+++.+||++..++|+..|| ++||+|+++++.... . ..|.|.+++.+.+ ++++++++.+.++|+.+++.|++
T Consensus 256 vl~~iLgg~~~srL~~~lRe~~glay~~~s~~~~~-~----~~g~~~i~~~~~~---~~~~~~~~~i~~~l~~l~~~~~t 327 (421)
T 3hdi_A 256 LLNNVLGGSMSSRLFQDIREKRGLCYSVFSYHSSF-R----DSGMLTIYAGTGH---DQLDDLVYSIQETTSALAEKGLT 327 (421)
T ss_dssp HHHHHHTSSSSSHHHHHHTTTTCCCSCEEEEEEEC-S----SCEEEEEEEEEEG---GGHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHCCCCCCHHHHHHHHHCCCEEEEEEEECCC-C----CCCEEEEEEEECH---HHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999679963279999987359779999751466-7----8836999998088---78999999999999999857999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHC-CCCCCEEEEEEECCC
Q ss_conf 468999999852023246688908999999986478-997542113533446989999999940-695644999982898
Q 004577 423 KWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLI-YPAEHVIYGEYMYEVWDEEMIKHLLGF-FMPENMRIDVVSKSF 500 (744)
Q Consensus 423 ~~~l~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~l~~~~~i~~~t~e~i~~~~~~-l~~~n~~i~i~~p~~ 500 (744)
+++++++|+....++.... +++..++..++..... ............++++|+++|++++++ + ++++.+++++|..
T Consensus 328 ~~el~~ak~~l~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~~-~~~~~~~vvgp~~ 405 (421)
T 3hdi_A 328 EKELENGKEQLKGSLMLSL-ESTNSRMSRNGKNELLLKKHRSLDEMIEQINAVQKQDVSRLAKILL-SASPSISLINANG 405 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHCCHHHHHHHHHHHT-TSCCEEEEEESSC
T ss_pred HHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHC-CCCCEEEEECCHH
T ss_conf 9999999999999998706-8999999999999996699899999999997089999999999970-5275899987500
No 8
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=1.00 E-value=1 Score=424.70 Aligned_cols=407 Identities=13% Similarity=0.074 Sum_probs=343.6
Q ss_pred CCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEE
Q ss_conf 64562178927897899996799886776532358976554345675566533554334443022310145655645537
Q 004577 20 DKRLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQTKKA 99 (744)
Q Consensus 20 d~~~~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (744)
..+.++..+|+||++|++++++ . + .+
T Consensus 10 ~~~~~~~~~L~NGl~v~~~~~~-~--------------~---------------------------------------~~ 35 (446)
T 1pp9_A 10 SVPETQVSQLDNGLRVASEQSS-Q--------------P---------------------------------------TC 35 (446)
T ss_dssp TSCCCEEEECTTCCEEEEEECS-C--------------S---------------------------------------EE
T ss_pred CCCCCEEEECCCCCEEEEEECC-C--------------C---------------------------------------EE
T ss_conf 5667459999999889999679-9--------------8---------------------------------------79
Q ss_pred EEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCEEEEEEEECHHHHHHHHHHHH
Q ss_conf 99999367888899999890699987602586679990189999996399500664798069999829333999999999
Q 004577 100 AAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFS 179 (744)
Q Consensus 100 ~~~l~v~~Gs~~dp~~~~GlAhllehmlf~Gs~~~p~~~~~~~~l~~~g~~~na~t~~~~t~~~~~~~~~~l~~~l~~~~ 179 (744)
.+.+++++|++.||.+..|+|||+|||+|+||++||. .++.+.++.+||.+||+|+.+.|+|++++++++++.+|++++
T Consensus 36 ~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~-~~~~~~l~~~G~~~na~t~~d~t~~~~~~~~~~l~~~l~ll~ 114 (446)
T 1pp9_A 36 TVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPG-NALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLA 114 (446)
T ss_dssp EEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTT-THHHHHHHHTTCEEEEEECSSCEEEEEEEEGGGHHHHHHHHH
T ss_pred EEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCH-HHHHHHHHHCCCEEEEEECCCEEEEEEEECHHHHHHHHHHHH
T ss_conf 9999975304889999873899999975178999998-999999997099799997687699999925788999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 83337899948899999899999986039969999999996189999999777677552322531491189999999982
Q 004577 180 QFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMN 259 (744)
Q Consensus 180 ~~~~~P~~~~~~~~~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~~~L~~~~~~~~~~~~~l~~f~~~ 259 (744)
+++.+|.|+++.|++|++++.+|++...+++..++.+.+...+|++|||+++..|+.++|.+ ++.++|++||++
T Consensus 115 d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~------~~~~~l~~f~~~ 188 (446)
T 1pp9_A 115 DIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRK------LSRADLTEYLSR 188 (446)
T ss_dssp HHHHHBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHH------CCHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH------CCHHHHHHHHHH
T ss_conf 99857999989999999999999986342888999999999862899999998588899974------799999999994
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCHHHH
Q ss_conf 055787289999099989999999997233247887888-7765533334420899966164129999998389734441
Q 004577 260 YYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKP-QFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPCLHQEYL 338 (744)
Q Consensus 260 ~Y~~~~~~lvi~G~~~~~~l~~lv~~~f~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~p~~~~~~~ 338 (744)
||+|+||+|+|+||++++++.++++++|+.|+.+..+.+ ... ..+.+..+......+..++..+.++|+.+.... .+
T Consensus 189 ~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~d 266 (446)
T 1pp9_A 189 HYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTL-SPCRFTGSQICHREDGLPLAHVAIAVEGPGWAH-PD 266 (446)
T ss_dssp HCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCSCCCSSCCCCC-CCCCCCCEEEEEEETTSSSEEEEEEEEECCTTC-TH
T ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCCCEEEEECCCCCCEEEEEEEECCCCCC-CC
T ss_conf 4678877999980899999999999982368888887766667-788878965897058854058999973489999-50
Q ss_pred CCHHHHHHHHHCC---------CCCCHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCEEEEEEEECCHHHHCHHHHHHHH
Q ss_conf 0669999999639---------9996389999846983403021277767765432278999993901030099999999
Q 004577 339 KKSEDYLAHLLGH---------EGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFV 409 (744)
Q Consensus 339 ~~~~~~l~~lLg~---------~~~~sL~~~Lr~~glay~i~~~~~~~~~~~~~~~g~f~i~~~l~~~g~~~~~~v~~~i 409 (744)
..++.+++.+||+ +..++|+..||++|++|+++++.... .+.|.|.+++.+.+ ++++++++.+
T Consensus 267 ~~al~vl~~iLg~~~~~~~~g~~~~srL~~~lr~~glay~~~s~~~~~-----~~~g~~~i~~~~~~---~~~~~~~~~i 338 (446)
T 1pp9_A 267 NVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICY-----ADTGLLGAHFVCDH---MSIDDMMFVL 338 (446)
T ss_dssp HHHHHHHHHHHCEEETTCSCGGGCSSHHHHHHHHHTCCSEEEEEEEEC-----SSCEEEEEEEEECT---TSHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEECCCC-----CCCEEEEEEEEECH---HHHHHHHHHH
T ss_conf 999999999819986457888987779999998649838998850567-----78769999999778---7799999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHC-CC
Q ss_conf 99999999639904689999998520232466889089999999864-78997542113533446989999999940-69
Q 004577 410 YQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNL-LIYPAEHVIYGEYMYEVWDEEMIKHLLGF-FM 487 (744)
Q Consensus 410 ~~~l~~l~~~g~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~l~~~~~i~~~t~e~i~~~~~~-l~ 487 (744)
.++++.+++ ++++++++++|.....++.... +++...+..++..+ ....+.+.......+.++|+++|++++++ +.
T Consensus 339 ~~~l~~l~~-~~t~~el~~ak~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~edv~~~a~~~~~ 416 (446)
T 1pp9_A 339 QGQWMRLCT-SATESEVLRGKNLLRNALVSHL-DGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYFY 416 (446)
T ss_dssp HHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHS-CSHHHHHHHHHHHHHHTSSCCCHHHHHHHHHTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCC
T ss_conf 999999864-6999999999999999998805-88999999999999973898999999999973999999999999738
Q ss_pred CCCEEEEEEECC
Q ss_conf 564499998289
Q 004577 488 PENMRIDVVSKS 499 (744)
Q Consensus 488 ~~n~~i~i~~p~ 499 (744)
+++..++++||.
T Consensus 417 ~~~~~~~~~g~~ 428 (446)
T 1pp9_A 417 DQCPAVAGFGPI 428 (446)
T ss_dssp TCCCEEEEEESC
T ss_pred CCCCEEEEECCC
T ss_conf 888679998874
No 9
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=1.00 E-value=1 Score=416.11 Aligned_cols=409 Identities=14% Similarity=0.104 Sum_probs=344.8
Q ss_pred CCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEE
Q ss_conf 45621789278978999967998867765323589765543456755665335543344430223101456556455379
Q 004577 21 KRLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQTKKAA 100 (744)
Q Consensus 21 ~~~~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (744)
.+.++..+|+||++|++++++.. + .+.
T Consensus 4 ~~~~~~~~L~NGl~v~~~~~~~~--------------~---------------------------------------~~~ 30 (443)
T 1hr6_B 4 IPGTRTSKLPNGLTIATEYIPNT--------------S---------------------------------------SAT 30 (443)
T ss_dssp -CCCEEEECTTSCEEEEEECSSC--------------S---------------------------------------EEE
T ss_pred CCCCEEEECCCCCEEEEEECCCC--------------C---------------------------------------EEE
T ss_conf 88745899899888999977999--------------8---------------------------------------799
Q ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCEEEEEEEECHHHHHHHHHHHHH
Q ss_conf 99993678888999998906999876025866799901899999963995006647980699998293339999999998
Q 004577 101 AAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQ 180 (744)
Q Consensus 101 ~~l~v~~Gs~~dp~~~~GlAhllehmlf~Gs~~~p~~~~~~~~l~~~g~~~na~t~~~~t~~~~~~~~~~l~~~l~~~~~ 180 (744)
+.+++++|+..||.+..|+||++|||+|+||++++. .++.+.++.+|+.+|++|+.++|+|++++++++++.+|+++++
T Consensus 31 ~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~-~~l~~~l~~~g~~~na~t~~~~t~~~~~~~~~~l~~~l~ll~d 109 (443)
T 1hr6_B 31 VGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQ-QGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSD 109 (443)
T ss_dssp EEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBH-HHHHHHHHHTTCEEEEEECSSEEEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCH-HHHHHHHHHCCCEEEEEECCCEEEEEEEECHHHHHHHHHHHHH
T ss_conf 999985113789999876899999875058889998-9999999975996789987876899999647779999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 33378999488999998999999860399699999999961899999997776775523225314911899999999820
Q 004577 181 FFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNY 260 (744)
Q Consensus 181 ~~~~P~~~~~~~~~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~~~L~~~~~~~~~~~~~l~~f~~~~ 260 (744)
++.+|.|+++.|++|++++.+|++...+++..++.+.+...+|++|||+++..|+.++|++ ++.++|++||++|
T Consensus 110 ~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~------~~~~~l~~f~~~~ 183 (443)
T 1hr6_B 110 ILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKS------ITRTDLKDYITKN 183 (443)
T ss_dssp HHHSBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHH------CCHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH------CCHHHHHHHHHHC
T ss_conf 9857899999999999999999984127848899999999734799898888389999964------8999999999944
Q ss_pred CCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCC--CCCCCCCCEEEEEEECCCCCEEEEEEECCCCCHHHH
Q ss_conf 557872899990999899999999972332478878887765--533334420899966164129999998389734441
Q 004577 261 YQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTV--EGTIWKACKLFRLEAVKDVHILDLTWTLPCLHQEYL 338 (744)
Q Consensus 261 Y~~~~~~lvi~G~~~~~~l~~lv~~~f~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~i~~~~p~~~~~~~ 338 (744)
|+|+||+|+|+||++++++.++++++|+.||.+..+.+.... ..+.+..+......+..++..+.++|+.+.... .+
T Consensus 184 y~~~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~ 262 (443)
T 1hr6_B 184 YKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFCRGERFIKENTLPTTHIAIALEGVSWSA-PD 262 (443)
T ss_dssp CCGGGEEEEEEESCCHHHHHHHHHHHHTTSCCCSSCCCTTSCCSSCCCCCCEEEEEECTTCSEEEEEEEEECCCTTC-TT
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCC-CC
T ss_conf 76777799998599999999999998357998888877654557888877876874268855058999970599999-41
Q ss_pred CCHHHHHHHHHCC---------CCCCHHHHHHH-HCCCCCEEECCCCCCCCCCCCCCCEEEEEEEEC--CHHHHCHHHHH
Q ss_conf 0669999999639---------99963899998-469834030212777677654322789999939--01030099999
Q 004577 339 KKSEDYLAHLLGH---------EGRGSLHSFLK-GRGWATSISAGVGDEGMHRSSIAYIFVMSIHLT--DSGLEKIFDII 406 (744)
Q Consensus 339 ~~~~~~l~~lLg~---------~~~~sL~~~Lr-~~glay~i~~~~~~~~~~~~~~~g~f~i~~~l~--~~g~~~~~~v~ 406 (744)
..++.+++.+||+ +..++|+..|| ++||+|+++++.... . +.|.|.+++.+. + +++++++
T Consensus 263 ~~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~-~----~~g~~~i~~~~~~~~---~~~~~~~ 334 (443)
T 1hr6_B 263 YFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSY-A----DSGLWGMYIVTDSNE---HNVRLIV 334 (443)
T ss_dssp HHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEEC-S----SCEEEEEEEEEETTT---CCHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCC-C----CCEEEEEEEEECCCH---HHHHHHH
T ss_conf 8999999998089865578888866689999998709748998652477-7----762799999826876---6799999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 999999999996399046899999985202324668890899999998647-8997542113533446989999999940
Q 004577 407 GFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLL-IYPAEHVIYGEYMYEVWDEEMIKHLLGF 485 (744)
Q Consensus 407 ~~i~~~l~~l~~~g~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~l~~~~~i~~~t~e~i~~~~~~ 485 (744)
+.+.++++.+++.++++++++++|......+..... ++..++..++..+. ...+.+.......++++|+++|++++++
T Consensus 335 ~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~~dv~~~a~~ 413 (443)
T 1hr6_B 335 NEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLD-GSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDIIMWANY 413 (443)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCC-SHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 999999999753898999999999999999997268-9999999999999854886899999999972899999999999
Q ss_pred -CCCCCEEEEEEECC
Q ss_conf -69564499998289
Q 004577 486 -FMPENMRIDVVSKS 499 (744)
Q Consensus 486 -l~~~n~~i~i~~p~ 499 (744)
+.+++..+++++|.
T Consensus 414 ~l~~~~~~~~v~g~~ 428 (443)
T 1hr6_B 414 RLQNKPVSMVALGNT 428 (443)
T ss_dssp HSSSCCEEEEEEECG
T ss_pred HHCCCCCEEEEECCC
T ss_conf 826688679998873
No 10
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=1.00 E-value=1 Score=411.66 Aligned_cols=403 Identities=11% Similarity=0.065 Sum_probs=338.2
Q ss_pred CCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEE
Q ss_conf 45621789278978999967998867765323589765543456755665335543344430223101456556455379
Q 004577 21 KRLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQTKKAA 100 (744)
Q Consensus 21 ~~~~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (744)
...++..+|+|||+|++.+++ . + .+.
T Consensus 3 ~~~~~~~~L~NGl~v~~~~~~-~--------------~---------------------------------------~~~ 28 (475)
T 1hr6_A 3 TDNFKLSSLANGLKVATSNTP-G--------------H---------------------------------------FSA 28 (475)
T ss_dssp TTCCEEEECTTSCEEEEESCC-C--------------S---------------------------------------SEE
T ss_pred CCCCEEEECCCCCEEEEEECC-C--------------C---------------------------------------EEE
T ss_conf 888469987899889998489-9--------------8---------------------------------------799
Q ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCEEEEEEEECHHHHHHHHHHHHH
Q ss_conf 99993678888999998906999876025866799901899999963995006647980699998293339999999998
Q 004577 101 AAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQ 180 (744)
Q Consensus 101 ~~l~v~~Gs~~dp~~~~GlAhllehmlf~Gs~~~p~~~~~~~~l~~~g~~~na~t~~~~t~~~~~~~~~~l~~~l~~~~~ 180 (744)
+.+++++|+++||++..|+|||+|||+|.||+++|. .++.+.++..|+.+||+|+.+.|+|++++++++++.+|+++++
T Consensus 29 ~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~-~~~~~~le~~G~~~na~t~~d~t~y~~~~~~~~l~~~l~ll~d 107 (475)
T 1hr6_A 29 LGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEG-RAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSE 107 (475)
T ss_dssp EEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCH-HHHHHHHHHTTSCEEEEECSSCEEEEEEECGGGHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCH-HHHHHHHHHCCCEEEEEECCCEEEEEEEECHHHHHHHHHHHHH
T ss_conf 999982136788999875999999998378999999-9999999982997887974673999998057889999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 33378999488999998999999860399699999999961899999997776775523225314911899999999820
Q 004577 181 FFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNY 260 (744)
Q Consensus 181 ~~~~P~~~~~~~~~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~~~L~~~~~~~~~~~~~l~~f~~~~ 260 (744)
++.+|.|++++|++|++++.+|++...++|..++.+.+...+|++|||++..+|+.++|.+ ++.++|++||++|
T Consensus 108 ~~~~p~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~------it~~~l~~f~~~~ 181 (475)
T 1hr6_A 108 TVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPS------ISKYYLLDYRNKF 181 (475)
T ss_dssp HHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCGGGGGG------CCHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH------CCHHHHHHHHHHH
T ss_conf 9848899999999999999999987654988999999999854899999987389899844------6999999999973
Q ss_pred CCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEE------ECCCCCEEEEEEECCCCC
Q ss_conf 55787289999099989999999997233247887888776553333442089996------616412999999838973
Q 004577 261 YQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLE------AVKDVHILDLTWTLPCLH 334 (744)
Q Consensus 261 Y~~~~~~lvi~G~~~~~~l~~lv~~~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~i~~~~p~~~ 334 (744)
|+|+||+|+|+| +++++++++++++|+.|+....+.+. +.+.+. +....+. +..++..+.++|+.++..
T Consensus 182 y~p~n~~l~v~G-~d~~~~~~~i~~~f~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 256 (475)
T 1hr6_A 182 YTPENTVAAFVG-VPHEKALELTGKYLGDWQSTHPPITK---KVAQYT-GGESCIPPAPVFGNLPELFHIQIGFEGLPID 256 (475)
T ss_dssp CCGGGEEEEEES-SCHHHHHHHHHHHHTTCCCCCCCCCC---CCCCCC-CEEEEECCCCCCSSSCCCEEEEEEEECCCTT
T ss_pred CCCCCEEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCC---CCCCCC-CCEEEEECCCCCCCCCCCEEEEEEEECCCCC
T ss_conf 895458999937-88999999999983568888887778---888876-8769995555567886514999999658999
Q ss_pred HHHHCCHHHHHHHHHCCC-----------CCCHHHHHHH-HCCCCCEEECCCCCCCCCCCCCCCEEEEEEEECCHHHHCH
Q ss_conf 444106699999996399-----------9963899998-4698340302127776776543227899999390103009
Q 004577 335 QEYLKKSEDYLAHLLGHE-----------GRGSLHSFLK-GRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKI 402 (744)
Q Consensus 335 ~~~~~~~~~~l~~lLg~~-----------~~~sL~~~Lr-~~glay~i~~~~~~~~~~~~~~~g~f~i~~~l~~~g~~~~ 402 (744)
. .+..++.+++.+||++ +.++|+..|| ++||+|+++++.... .+.|.|.|++.+.+ +++
T Consensus 257 ~-~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~-----~~~g~~~i~~~~~~---~~~ 327 (475)
T 1hr6_A 257 H-PDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSY-----SDSGIFGISLSCIP---QAA 327 (475)
T ss_dssp C-TTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEEC-----SSCEEEEEEEEECG---GGH
T ss_pred C-CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCC-----CCCCEEEEEEEECH---HHH
T ss_conf 9-66899999999968996555678887757789999998648706999740566-----78845999999678---889
Q ss_pred HHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCHHH
Q ss_conf 9999999999999996---3990468999999852023246688908999999986478-99754211353344698999
Q 004577 403 FDIIGFVYQYIKLLRQ---VSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLI-YPAEHVIYGEYMYEVWDEEM 478 (744)
Q Consensus 403 ~~v~~~i~~~l~~l~~---~g~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~l~~~~~i~~~t~e~ 478 (744)
.++++.+.++++.+++ .++++++++++|+.+...+.... .++...+..++..+.. ..+.+.......++++|+++
T Consensus 328 ~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~~d 406 (475)
T 1hr6_A 328 PQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNL-ESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDD 406 (475)
T ss_dssp HHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHT-TSHHHHHHHHHHHHHHHSCCCCHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHH
T ss_conf 999999999999997304799899999999999999999847-9899999999999996599899999999997589999
Q ss_pred HHHHHHC-CCC---------CCEEEEEEECC
Q ss_conf 9999940-695---------64499998289
Q 004577 479 IKHLLGF-FMP---------ENMRIDVVSKS 499 (744)
Q Consensus 479 i~~~~~~-l~~---------~n~~i~i~~p~ 499 (744)
|++++++ +.+ +++.+++++|.
T Consensus 407 v~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~ 437 (475)
T 1hr6_A 407 ISRVAEMIFTGNVNNAGNGKGRATVVMQGDR 437 (475)
T ss_dssp HHHHHHHHHTTCCCCTTCCCCCCEEEEESCG
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCEEEEECCC
T ss_conf 9999999864104432246788379998884
Done!