Query 004579
Match_columns 744
No_of_seqs 517 out of 2660
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 01:42:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004579.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004579hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02270 phospholipase D alpha 100.0 2E-190 4E-195 1613.9 69.2 744 1-744 65-808 (808)
2 PLN03008 Phospholipase D delta 100.0 3E-184 7E-189 1560.6 68.9 726 1-744 95-868 (868)
3 PLN02352 phospholipase D epsil 100.0 1E-178 2E-183 1516.0 65.1 700 3-744 53-758 (758)
4 KOG1329 Phospholipase D1 [Lipi 100.0 2E-155 4E-160 1317.2 56.3 676 6-744 161-853 (887)
5 PLN02866 phospholipase D 100.0 1.1E-98 2E-103 871.8 53.9 543 79-719 286-1056(1068)
6 PRK12452 cardiolipin synthetas 100.0 6.4E-54 1.4E-58 488.4 27.8 385 75-635 44-465 (509)
7 PRK01642 cls cardiolipin synth 100.0 6.4E-53 1.4E-57 479.3 27.9 382 75-635 20-439 (483)
8 PRK11263 cardiolipin synthase 100.0 2.7E-49 5.9E-54 438.6 32.5 342 110-659 3-344 (411)
9 COG1502 Cls Phosphatidylserine 100.0 2.1E-37 4.5E-42 349.6 32.1 336 112-635 57-394 (438)
10 PHA02820 phospholipase-D-like 100.0 1.2E-36 2.6E-41 339.1 30.7 326 145-634 26-361 (424)
11 PRK09428 pssA phosphatidylseri 100.0 1.2E-35 2.6E-40 331.9 32.5 340 113-635 23-395 (451)
12 PHA03003 palmytilated EEV memb 100.0 1.4E-34 3.1E-39 318.5 29.7 316 145-634 31-347 (369)
13 PF12357 PLD_C: Phospholipase 99.9 9.5E-27 2.1E-31 191.3 6.5 73 662-735 2-74 (74)
14 PRK05443 polyphosphate kinase; 99.8 3.1E-18 6.8E-23 199.9 24.7 270 144-635 347-633 (691)
15 TIGR03705 poly_P_kin polyphosp 99.8 5.1E-18 1.1E-22 197.0 22.5 270 144-635 338-624 (672)
16 cd04013 C2_SynGAP_like C2 doma 99.7 6.5E-17 1.4E-21 154.7 9.3 88 1-89 45-144 (146)
17 cd04015 C2_plant_PLD C2 domain 99.7 2.4E-16 5.1E-21 153.8 10.3 83 1-84 76-158 (158)
18 cd04016 C2_Tollip C2 domain pr 99.6 5E-15 1.1E-19 137.9 9.6 81 1-83 39-121 (121)
19 cd00138 PLDc Phospholipase D. 99.6 4.9E-14 1.1E-18 139.3 14.5 145 144-365 20-169 (176)
20 PHA02820 phospholipase-D-like 99.5 1.1E-13 2.4E-18 155.1 14.9 147 394-632 4-150 (424)
21 cd08379 C2D_MCTP_PRT_plant C2 99.5 6.1E-14 1.3E-18 131.5 9.1 78 1-79 41-125 (126)
22 PHA03003 palmytilated EEV memb 99.5 4.2E-13 9.2E-18 148.3 13.9 146 146-365 217-363 (369)
23 KOG3603 Predicted phospholipas 99.4 1.6E-10 3.5E-15 124.6 29.2 335 146-634 73-419 (456)
24 PRK12452 cardiolipin synthetas 99.4 8.6E-13 1.9E-17 151.4 11.6 139 144-366 343-481 (509)
25 PRK13912 nuclease NucT; Provis 99.4 7.2E-12 1.6E-16 124.6 15.8 140 145-365 33-174 (177)
26 cd00138 PLDc Phospholipase D. 99.4 1.9E-12 4.2E-17 127.8 11.1 131 433-634 19-152 (176)
27 PRK13912 nuclease NucT; Provis 99.3 3.9E-12 8.5E-17 126.5 10.5 127 434-635 32-159 (177)
28 cd08682 C2_Rab11-FIP_classI C2 99.3 5.1E-12 1.1E-16 118.5 8.7 81 1-82 37-126 (126)
29 cd04019 C2C_MCTP_PRT_plant C2 99.3 6.8E-12 1.5E-16 121.4 9.3 84 2-85 39-133 (150)
30 cd08378 C2B_MCTP_PRT_plant C2 99.3 9.6E-12 2.1E-16 116.0 9.5 81 1-84 34-120 (121)
31 cd04042 C2A_MCTP_PRT C2 domain 99.3 1.2E-11 2.7E-16 115.0 9.7 82 1-85 39-121 (121)
32 cd08373 C2A_Ferlin C2 domain f 99.3 1.8E-11 3.9E-16 114.9 10.1 86 1-89 32-121 (127)
33 cd08400 C2_Ras_p21A1 C2 domain 99.3 2E-11 4.3E-16 114.6 10.3 80 6-85 43-124 (126)
34 cd04052 C2B_Tricalbin-like C2 99.2 1.7E-11 3.7E-16 112.5 8.4 79 1-86 31-111 (111)
35 PF13091 PLDc_2: PLD-like doma 99.2 4.4E-11 9.6E-16 111.4 9.8 112 441-634 2-113 (126)
36 cd08678 C2_C21orf25-like C2 do 99.2 6.2E-11 1.3E-15 111.2 9.6 87 1-88 37-124 (126)
37 cd08401 C2A_RasA2_RasA3 C2 dom 99.2 4.7E-11 1E-15 111.4 8.6 81 1-83 40-121 (121)
38 PF13091 PLDc_2: PLD-like doma 99.2 2.3E-10 5E-15 106.5 12.4 124 150-362 1-126 (126)
39 cd08681 C2_fungal_Inn1p-like C 99.1 1.3E-10 2.8E-15 107.5 8.4 74 6-83 44-118 (118)
40 cd04044 C2A_Tricalbin-like C2 99.1 1.8E-10 4E-15 107.1 8.2 81 1-85 43-124 (124)
41 cd04022 C2A_MCTP_PRT_plant C2 99.1 3.2E-10 6.9E-15 106.4 8.4 82 1-84 38-126 (127)
42 PRK01642 cls cardiolipin synth 99.0 1E-09 2.3E-14 125.7 12.7 136 145-365 318-454 (483)
43 cd04036 C2_cPLA2 C2 domain pre 99.0 6.8E-10 1.5E-14 103.0 8.8 74 1-81 41-115 (119)
44 cd08377 C2C_MCTP_PRT C2 domain 99.0 1.1E-09 2.4E-14 101.2 9.3 79 1-83 39-118 (119)
45 cd08394 C2A_Munc13 C2 domain f 99.0 5E-10 1.1E-14 104.4 6.7 60 6-65 40-101 (127)
46 cd04025 C2B_RasA1_RasA4 C2 dom 99.0 1.1E-09 2.3E-14 102.2 8.7 80 1-81 38-122 (123)
47 PRK11263 cardiolipin synthase 99.0 3.2E-09 7E-14 118.8 13.7 135 145-365 206-342 (411)
48 cd08395 C2C_Munc13 C2 domain t 99.0 6.5E-10 1.4E-14 103.4 6.5 63 1-64 44-111 (120)
49 cd08391 C2A_C2C_Synaptotagmin_ 99.0 1.6E-09 3.4E-14 100.4 9.0 76 1-83 45-121 (121)
50 cd08688 C2_KIAA0528-like C2 do 99.0 7E-10 1.5E-14 101.5 6.1 64 1-65 38-109 (110)
51 cd08685 C2_RGS-like C2 domain 99.0 6.5E-10 1.4E-14 103.4 5.9 62 1-63 54-119 (119)
52 cd08690 C2_Freud-1 C2 domain f 99.0 2.2E-09 4.8E-14 104.0 9.8 84 1-88 47-141 (155)
53 cd04033 C2_NEDD4_NEDD4L C2 dom 99.0 1.6E-09 3.4E-14 102.4 8.3 80 2-83 46-132 (133)
54 cd04051 C2_SRC2_like C2 domain 99.0 1.4E-09 3E-14 101.7 7.5 75 2-79 40-125 (125)
55 cd04050 C2B_Synaptotagmin-like 99.0 1E-09 2.2E-14 99.5 6.4 62 1-65 38-102 (105)
56 cd04054 C2A_Rasal1_RasA4 C2 do 99.0 2.4E-09 5.3E-14 99.7 9.0 79 1-81 39-119 (121)
57 cd08376 C2B_MCTP_PRT C2 domain 98.9 3.4E-09 7.4E-14 97.6 9.0 75 1-83 38-114 (116)
58 cd04024 C2A_Synaptotagmin-like 98.9 2.8E-09 6.2E-14 99.7 8.5 81 1-82 41-127 (128)
59 cd04014 C2_PKC_epsilon C2 doma 98.9 5.5E-09 1.2E-13 98.7 9.4 73 2-84 54-129 (132)
60 PRK05443 polyphosphate kinase; 98.9 7.4E-09 1.6E-13 121.9 11.9 119 438-636 351-481 (691)
61 cd04011 C2B_Ferlin C2 domain s 98.9 2.2E-09 4.8E-14 98.3 5.9 63 2-65 39-110 (111)
62 cd04029 C2A_SLP-4_5 C2 domain 98.9 3.3E-09 7.2E-14 99.5 7.1 62 1-63 59-124 (125)
63 cd08381 C2B_PI3K_class_II C2 d 98.9 4E-09 8.6E-14 98.5 7.6 62 1-63 55-121 (122)
64 cd08385 C2A_Synaptotagmin-1-5- 98.9 4.8E-09 1E-13 97.9 7.5 63 1-64 57-123 (124)
65 cd04045 C2C_Tricalbin-like C2 98.9 3.9E-09 8.3E-14 98.3 6.5 64 2-67 41-105 (120)
66 PF00614 PLDc: Phospholipase D 98.8 9.2E-10 2E-14 74.8 0.8 27 263-300 2-28 (28)
67 cd08387 C2A_Synaptotagmin-8 C2 98.8 7.3E-09 1.6E-13 96.7 6.7 63 1-64 57-123 (124)
68 cd04010 C2B_RasA3 C2 domain se 98.8 8.2E-09 1.8E-13 99.6 7.1 68 1-69 41-126 (148)
69 cd08393 C2A_SLP-1_2 C2 domain 98.8 1E-08 2.2E-13 96.1 7.5 63 1-64 59-125 (125)
70 cd04046 C2_Calpain C2 domain p 98.8 2.9E-08 6.2E-13 93.2 10.5 82 1-85 41-123 (126)
71 cd04043 C2_Munc13_fungal C2 do 98.8 2.3E-08 5E-13 93.5 9.4 62 2-64 43-109 (126)
72 cd04018 C2C_Ferlin C2 domain t 98.8 7.7E-09 1.7E-13 100.1 6.0 61 1-63 52-115 (151)
73 cd08375 C2_Intersectin C2 doma 98.8 2.1E-08 4.5E-13 95.5 8.7 76 1-83 53-135 (136)
74 cd08521 C2A_SLP C2 domain firs 98.8 1.3E-08 2.9E-13 94.5 6.8 62 1-63 58-123 (123)
75 cd08392 C2A_SLP-3 C2 domain fi 98.8 1.4E-08 3.1E-13 95.6 6.9 62 1-63 59-127 (128)
76 cd04030 C2C_KIAA1228 C2 domain 98.7 1.7E-08 3.7E-13 94.5 6.9 62 1-63 59-126 (127)
77 cd04028 C2B_RIM1alpha C2 domai 98.7 2.1E-08 4.5E-13 96.5 7.6 65 1-66 73-139 (146)
78 cd08676 C2A_Munc13-like C2 dom 98.7 1.4E-08 3E-13 98.5 6.4 57 2-63 96-153 (153)
79 KOG1030 Predicted Ca2+-depende 98.7 6.8E-09 1.5E-13 99.9 4.0 58 1-59 44-102 (168)
80 cd08383 C2A_RasGAP C2 domain ( 98.7 4E-08 8.6E-13 90.4 9.0 75 7-83 40-117 (117)
81 cd08382 C2_Smurf-like C2 domai 98.7 3.5E-08 7.6E-13 92.2 7.7 63 1-65 39-105 (123)
82 cd04049 C2_putative_Elicitor-r 98.7 2.6E-08 5.7E-13 92.9 6.5 64 2-65 40-108 (124)
83 cd04031 C2A_RIM1alpha C2 domai 98.7 3.9E-08 8.5E-13 91.7 7.4 61 1-63 59-124 (125)
84 cd04040 C2D_Tricalbin-like C2 98.7 5.3E-08 1.1E-12 89.5 7.8 68 1-69 38-107 (115)
85 cd08386 C2A_Synaptotagmin-7 C2 98.7 3.3E-08 7.1E-13 92.3 6.4 63 1-64 57-124 (125)
86 cd08404 C2B_Synaptotagmin-4 C2 98.7 1.6E-08 3.5E-13 96.1 4.3 68 1-71 58-129 (136)
87 KOG3603 Predicted phospholipas 98.7 1.6E-07 3.5E-12 101.7 12.0 159 146-367 277-441 (456)
88 cd04027 C2B_Munc13 C2 domain s 98.7 6.5E-08 1.4E-12 90.9 8.0 75 2-80 40-126 (127)
89 cd04021 C2_E3_ubiquitin_ligase 98.6 6.8E-08 1.5E-12 90.6 7.9 77 1-80 40-123 (125)
90 cd04026 C2_PKC_alpha_gamma C2 98.6 4.6E-08 1E-12 92.2 6.8 64 1-66 56-122 (131)
91 cd00275 C2_PLC_like C2 domain 98.6 1.2E-07 2.6E-12 88.6 9.1 78 2-83 49-127 (128)
92 cd08677 C2A_Synaptotagmin-13 C 98.6 4.6E-08 1E-12 90.4 6.1 62 1-63 53-118 (118)
93 cd08680 C2_Kibra C2 domain fou 98.6 5E-08 1.1E-12 91.4 6.5 61 2-63 59-124 (124)
94 cd08389 C2A_Synaptotagmin-14_1 98.6 7.3E-08 1.6E-12 90.2 7.1 58 7-64 61-123 (124)
95 cd08675 C2B_RasGAP C2 domain s 98.6 7.3E-08 1.6E-12 91.9 7.1 64 1-65 40-120 (137)
96 cd04039 C2_PSD C2 domain prese 98.6 4.6E-08 1E-12 89.4 5.4 56 1-57 43-101 (108)
97 cd04048 C2A_Copine C2 domain f 98.6 6.9E-08 1.5E-12 89.7 6.6 67 1-70 45-117 (120)
98 cd04017 C2D_Ferlin C2 domain f 98.6 1.4E-07 2.9E-12 89.7 8.6 80 1-85 39-133 (135)
99 cd00276 C2B_Synaptotagmin C2 d 98.6 2.3E-08 5.1E-13 94.2 3.2 68 1-71 57-128 (134)
100 cd08403 C2B_Synaptotagmin-3-5- 98.6 3.5E-08 7.6E-13 93.5 3.2 68 1-71 57-128 (134)
101 cd08405 C2B_Synaptotagmin-7 C2 98.6 4.8E-08 1E-12 92.8 4.1 68 1-71 58-129 (136)
102 smart00155 PLDc Phospholipase 98.6 5.3E-08 1.1E-12 66.7 3.1 26 592-617 3-28 (28)
103 cd08402 C2B_Synaptotagmin-1 C2 98.5 3.7E-08 8E-13 93.6 3.1 67 2-71 59-129 (136)
104 cd08390 C2A_Synaptotagmin-15-1 98.5 1.5E-07 3.2E-12 87.6 6.6 63 1-64 56-122 (123)
105 cd08384 C2B_Rabphilin_Doc2 C2 98.5 5.5E-08 1.2E-12 91.9 3.6 68 1-71 56-127 (133)
106 cd04041 C2A_fungal C2 domain f 98.5 9.9E-08 2.1E-12 87.5 5.1 60 1-64 43-107 (111)
107 PLN03200 cellulose synthase-in 98.5 1.2E-07 2.7E-12 120.7 7.5 80 1-85 2017-2101(2102)
108 PRK09428 pssA phosphatidylseri 98.5 9.5E-07 2.1E-11 100.0 11.9 123 434-618 34-160 (451)
109 cd08388 C2A_Synaptotagmin-4-11 98.4 2.7E-07 5.8E-12 86.9 5.8 63 1-64 58-127 (128)
110 COG1502 Cls Phosphatidylserine 98.4 1.2E-06 2.6E-11 99.3 12.0 135 147-366 272-410 (438)
111 cd04020 C2B_SLP_1-2-3-4 C2 dom 98.4 3.9E-07 8.6E-12 89.4 6.1 63 1-64 70-137 (162)
112 cd08406 C2B_Synaptotagmin-12 C 98.4 2.4E-07 5.3E-12 88.2 4.3 68 1-71 58-129 (136)
113 cd04032 C2_Perforin C2 domain 98.4 5E-07 1.1E-11 85.0 6.0 52 1-53 65-119 (127)
114 cd08407 C2B_Synaptotagmin-13 C 98.4 2.1E-07 4.6E-12 88.8 3.5 67 2-71 61-131 (138)
115 cd04038 C2_ArfGAP C2 domain pr 98.4 4.1E-07 9E-12 87.6 5.4 56 1-57 39-95 (145)
116 cd04009 C2B_Munc13-like C2 dom 98.4 5.5E-07 1.2E-11 85.3 6.1 53 1-54 61-119 (133)
117 cd08691 C2_NEDL1-like C2 domai 98.4 1.3E-06 2.9E-11 83.2 8.4 62 1-64 51-120 (137)
118 cd08409 C2B_Synaptotagmin-15 C 98.3 3.8E-07 8.2E-12 87.0 3.9 68 1-69 57-128 (137)
119 cd08410 C2B_Synaptotagmin-17 C 98.3 5.1E-07 1.1E-11 85.8 3.0 69 1-71 57-129 (135)
120 PF00614 PLDc: Phospholipase D 98.2 5.2E-07 1.1E-11 61.4 1.6 26 592-617 3-28 (28)
121 PLN02223 phosphoinositide phos 98.2 2.8E-06 6.1E-11 96.3 8.2 76 1-83 457-534 (537)
122 cd04035 C2A_Rabphilin_Doc2 C2 98.2 2.3E-06 5E-11 79.7 6.4 61 1-62 58-122 (123)
123 PLN02952 phosphoinositide phos 98.2 3.8E-06 8.3E-11 97.1 9.1 77 1-84 519-597 (599)
124 cd04047 C2B_Copine C2 domain s 98.2 2.3E-06 5E-11 78.0 5.5 53 1-55 44-102 (110)
125 cd04037 C2E_Ferlin C2 domain f 98.2 3E-06 6.5E-11 79.3 5.9 50 2-52 41-92 (124)
126 cd08686 C2_ABR C2 domain in th 98.1 3.7E-06 8.1E-11 77.6 5.8 48 1-50 37-92 (118)
127 cd00030 C2 C2 domain. The C2 d 98.1 7.4E-06 1.6E-10 71.0 6.2 61 2-63 39-102 (102)
128 smart00239 C2 Protein kinase C 98.1 5.8E-06 1.3E-10 72.2 5.5 55 2-57 42-98 (101)
129 cd08408 C2B_Synaptotagmin-14_1 98.1 2.9E-06 6.3E-11 81.0 3.7 66 2-70 60-130 (138)
130 KOG1028 Ca2+-dependent phospho 98.0 1.2E-05 2.5E-10 90.6 9.0 87 2-89 209-299 (421)
131 cd08692 C2B_Tac2-N C2 domain s 98.0 4.3E-06 9.3E-11 79.2 3.8 69 1-71 57-129 (135)
132 PLN02230 phosphoinositide phos 97.8 7E-05 1.5E-09 86.6 9.0 69 1-73 518-588 (598)
133 PF00168 C2: C2 domain; Inter 97.7 4.6E-05 9.9E-10 65.0 4.7 44 1-45 40-85 (85)
134 PLN02228 Phosphoinositide phos 97.7 0.00012 2.6E-09 84.4 9.4 81 1-86 480-563 (567)
135 PLN02222 phosphoinositide phos 97.7 0.00012 2.6E-09 84.6 8.9 76 1-81 501-578 (581)
136 KOG3964 Phosphatidylglycerolph 97.7 0.001 2.2E-08 71.8 15.0 129 143-302 37-171 (469)
137 TIGR03705 poly_P_kin polyphosp 97.6 0.00049 1.1E-08 81.3 13.5 117 438-634 342-470 (672)
138 KOG0169 Phosphoinositide-speci 97.6 0.00013 2.7E-09 84.8 7.9 78 2-83 664-743 (746)
139 smart00155 PLDc Phospholipase 97.6 6.7E-05 1.5E-09 51.3 3.1 26 263-299 2-27 (28)
140 PF13918 PLDc_3: PLD-like doma 97.5 0.00071 1.5E-08 66.7 10.2 56 147-207 84-140 (177)
141 KOG1011 Neurotransmitter relea 97.4 0.00015 3.3E-09 81.5 5.1 72 6-80 337-420 (1283)
142 COG5038 Ca2+-dependent lipid-b 97.4 0.00033 7.1E-09 84.5 7.6 86 1-91 477-564 (1227)
143 cd08689 C2_fungal_Pkc1p C2 dom 97.3 0.00019 4.2E-09 64.5 3.7 47 6-53 42-88 (109)
144 PF07894 DUF1669: Protein of u 97.3 0.0034 7.4E-08 66.3 13.5 144 146-362 135-278 (284)
145 PLN02866 phospholipase D 97.2 0.0018 4E-08 78.4 10.8 62 434-506 343-404 (1068)
146 KOG0696 Serine/threonine prote 97.2 0.00016 3.5E-09 78.5 1.8 66 2-69 224-293 (683)
147 KOG1264 Phospholipase C [Lipid 97.0 0.00069 1.5E-08 78.4 4.7 83 1-88 1108-1193(1267)
148 KOG1031 Predicted Ca2+-depende 97.0 0.0015 3.2E-08 73.0 7.0 74 6-82 46-134 (1169)
149 KOG1328 Synaptic vesicle prote 96.9 0.00083 1.8E-08 77.0 4.5 79 3-83 184-300 (1103)
150 COG5038 Ca2+-dependent lipid-b 96.6 0.0025 5.4E-08 77.1 5.7 81 2-86 1080-1163(1227)
151 cd08374 C2F_Ferlin C2 domain s 96.6 0.0037 7.9E-08 59.3 5.6 50 6-55 49-125 (133)
152 PF13918 PLDc_3: PLD-like doma 96.4 0.031 6.7E-07 55.3 11.1 56 437-511 84-146 (177)
153 COG0855 Ppk Polyphosphate kina 96.0 1.9 4E-05 50.4 24.0 95 144-276 351-448 (696)
154 KOG1028 Ca2+-dependent phospho 96.0 0.0043 9.4E-08 70.1 3.3 66 2-70 342-411 (421)
155 PF07894 DUF1669: Protein of u 96.0 0.042 9E-07 58.2 10.0 123 433-621 132-255 (284)
156 KOG2059 Ras GTPase-activating 95.8 0.018 3.8E-07 66.6 6.8 85 2-90 45-131 (800)
157 COG3886 Predicted HKD family n 95.4 0.21 4.6E-06 49.6 11.7 141 144-364 38-179 (198)
158 cd08683 C2_C2cd3 C2 domain fou 95.2 0.027 5.8E-07 52.6 4.6 58 6-63 58-143 (143)
159 KOG1329 Phospholipase D1 [Lipi 95.2 0.14 3E-06 61.3 11.5 134 144-301 565-726 (887)
160 PF13090 PP_kinase_C: Polyphos 95.0 5.1 0.00011 43.8 21.9 136 146-360 19-160 (352)
161 PLN02352 phospholipase D epsil 94.8 0.1 2.3E-06 62.2 9.2 64 144-207 452-519 (758)
162 PLN03008 Phospholipase D delta 94.4 0.11 2.3E-06 62.5 8.1 71 137-207 558-633 (868)
163 PF11495 Regulator_TrmB: Archa 94.0 0.12 2.6E-06 53.8 6.8 49 145-209 10-58 (233)
164 PLN02270 phospholipase D alpha 93.5 0.21 4.5E-06 59.9 8.1 143 144-302 498-683 (808)
165 KOG2059 Ras GTPase-activating 90.8 0.38 8.2E-06 56.1 5.7 82 6-87 176-279 (800)
166 PF13090 PP_kinase_C: Polyphos 90.0 1 2.2E-05 49.1 7.8 92 484-634 51-149 (352)
167 KOG1011 Neurotransmitter relea 89.7 0.2 4.3E-06 57.4 2.4 85 3-88 1171-1260(1283)
168 PF10358 NT-C2: N-terminal C2 86.5 3.3 7.2E-05 39.2 8.3 77 10-90 53-141 (143)
169 KOG1328 Synaptic vesicle prote 86.1 0.32 6.9E-06 56.7 1.2 51 1-52 992-1048(1103)
170 PF14429 DOCK-C2: C2 domain in 82.0 4 8.7E-05 40.8 7.0 49 6-56 69-124 (184)
171 COG0855 Ppk Polyphosphate kina 79.5 5.1 0.00011 47.0 7.4 90 485-633 386-482 (696)
172 cd05137 RasGAP_CLA2_BUD2 CLA2/ 79.1 2.3 4.9E-05 47.9 4.4 43 40-84 1-44 (395)
173 cd08694 C2_Dock-A C2 domains f 79.1 3 6.5E-05 42.1 4.8 44 5-48 62-113 (196)
174 cd08695 C2_Dock-B C2 domains f 75.1 4.7 0.0001 40.6 4.9 44 5-48 62-111 (189)
175 KOG3837 Uncharacterized conser 73.9 8 0.00017 42.9 6.6 83 1-87 410-506 (523)
176 PLN02964 phosphatidylserine de 73.4 1.1 2.5E-05 53.1 0.1 66 3-69 88-157 (644)
177 PF11495 Regulator_TrmB: Archa 72.3 12 0.00025 38.9 7.4 51 433-507 8-58 (233)
178 PF09565 RE_NgoFVII: NgoFVII r 68.7 5 0.00011 43.3 3.7 40 592-633 79-123 (296)
179 cd08684 C2A_Tac2-N C2 domain f 68.3 2.4 5.2E-05 37.2 1.0 58 4-63 43-103 (103)
180 cd08679 C2_DOCK180_related C2 65.2 14 0.0003 36.8 5.9 44 7-50 63-115 (178)
181 PF06087 Tyr-DNA_phospho: Tyro 58.8 6.3 0.00014 45.1 2.4 39 591-630 346-401 (443)
182 COG3886 Predicted HKD family n 57.8 1E+02 0.0022 31.1 10.2 53 434-508 38-90 (198)
183 cd08696 C2_Dock-C C2 domains f 57.5 22 0.00048 35.5 5.7 45 6-50 64-118 (179)
184 KOG1326 Membrane-associated pr 55.3 8.6 0.00019 47.0 2.8 73 2-79 921-1017(1105)
185 cd08397 C2_PI3K_class_III C2 d 51.9 24 0.00051 34.6 4.8 45 6-50 57-106 (159)
186 cd08380 C2_PI3K_like C2 domain 47.8 25 0.00054 34.0 4.3 44 7-50 56-106 (156)
187 cd08697 C2_Dock-D C2 domains f 43.8 60 0.0013 32.7 6.3 45 6-50 66-123 (185)
188 KOG1326 Membrane-associated pr 38.3 11 0.00025 46.0 0.3 56 2-66 654-711 (1105)
189 PF00792 PI3K_C2: Phosphoinosi 36.5 82 0.0018 29.9 5.8 50 7-57 32-90 (142)
190 COG1489 SfsA DNA-binding prote 35.5 1E+02 0.0023 32.1 6.6 23 185-207 190-212 (235)
191 KOG3964 Phosphatidylglycerolph 32.2 93 0.002 34.8 5.9 54 435-508 39-92 (469)
192 PF06087 Tyr-DNA_phospho: Tyro 30.2 34 0.00074 39.2 2.4 28 592-619 100-131 (443)
193 cd08398 C2_PI3K_class_I_alpha 29.8 75 0.0016 31.1 4.4 44 7-50 53-105 (158)
194 KOG1265 Phospholipase C [Lipid 29.2 1.3E+02 0.0028 37.1 6.7 62 3-71 747-811 (1189)
195 KOG1013 Synaptic vesicle prote 28.4 37 0.00081 36.9 2.1 60 3-65 278-341 (362)
196 KOG0694 Serine/threonine prote 28.3 17 0.00038 43.0 -0.3 64 5-70 49-114 (694)
197 PF15625 CC2D2AN-C2: CC2D2A N- 28.3 1.1E+02 0.0024 30.1 5.3 53 11-63 66-122 (168)
198 KOG1013 Synaptic vesicle prote 27.4 36 0.00078 37.0 1.8 54 2-56 137-195 (362)
199 TIGR00230 sfsA sugar fermentat 25.8 1.7E+02 0.0037 30.6 6.4 55 147-207 159-213 (232)
200 PF14924 DUF4497: Protein of u 24.8 1.2E+02 0.0027 27.6 4.7 58 24-84 29-104 (112)
201 KOG0905 Phosphoinositide 3-kin 22.9 67 0.0015 40.6 3.1 63 1-64 1567-1634(1639)
202 PF03749 SfsA: Sugar fermentat 22.0 2.7E+02 0.0059 28.7 7.0 23 185-207 179-201 (215)
203 cd08693 C2_PI3K_class_I_beta_d 21.8 1.4E+02 0.0029 29.7 4.6 28 7-34 55-86 (173)
204 cd08687 C2_PKN-like C2 domain 21.7 1.1E+02 0.0024 27.4 3.4 44 7-53 31-74 (98)
205 PF11618 DUF3250: Protein of u 20.1 4.6E+02 0.01 23.9 7.3 74 6-82 20-103 (107)
No 1
>PLN02270 phospholipase D alpha
Probab=100.00 E-value=2e-190 Score=1613.91 Aligned_cols=744 Identities=88% Similarity=1.482 Sum_probs=708.8
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCCCCCCeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEEEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVK 80 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV~ 80 (744)
||+|++.||+|||+|+|||||++++|+|+|||+|++|+++||+++|||++|++|+.|++||||++++|||++.+.+|||.
T Consensus 65 ~~~~~~~~p~w~e~f~i~~ah~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~ 144 (808)
T PLN02270 65 KIENEPKNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVK 144 (808)
T ss_pred ecCCCCCCCccccceEEeeccCcceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEE
Confidence 68886689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccccccccccccccccCCccccccccccCCeeeEcccccCCCCCCCccccCCCcccChhhHHHHHHHHHHhcccE
Q 004579 81 LQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLYQDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHM 160 (744)
Q Consensus 81 lqf~p~~~~~~w~~~i~~~~~~gv~~~~~~~r~G~~v~l~~d~~~~~~~~p~~~~~~g~~~~~~~~~~~l~~aI~~Ak~~ 160 (744)
+||+|+..++.|..||.++.|.|||.+|||+|.||+||||||+|++++|+|.|++.+|+.|++.+||+++++||.+|||+
T Consensus 145 ~~f~~~~~~~~~~~gv~~~~~~gvp~t~f~~r~g~~vtlyqdahv~~~~~p~i~l~~g~~~~~~~cwedi~~AI~~Ar~~ 224 (808)
T PLN02270 145 LQYFEVTKDRNWGRGIRSAKFPGVPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDAITNAKHL 224 (808)
T ss_pred EEEEEcccCcchhcccCCcCcCCCCCcccccCCCCeeEEeccccCCCCCCCccccCCCcccchhhhHHHHHHHHHhhhcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccCCCcHHHHHHhcCCCcE
Q 004579 161 IYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVH 240 (744)
Q Consensus 161 I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~g~~~~~~~~~~~~l~~~gV~ 240 (744)
|||++|+|+|+++|+|++..+.++...+|+++|++||++||+|+||+||+.++..+++..|+|.||+++++++|++++|+
T Consensus 225 IyI~GW~~d~~i~LvRd~~~p~~~~~~~LGeLLk~KA~eGV~V~iLvWDd~ts~~~~k~~g~m~thd~~t~~~f~~~~V~ 304 (808)
T PLN02270 225 IYITGWSVYTEISLVRDSRRPKPGGDVTIGELLKKKASEGVRVLLLVWDDRTSVDLLKKDGLMATHDEETENFFRGTDVH 304 (808)
T ss_pred EEEEEeecCCCceEecCCCCCCCCCcchHHHHHHHHhcCCCEEEEEEEcCcccchhhccccccccCHHHHHHHhccCCce
Confidence 99999999999999998765555566899999999999999999999999998877777899999999999999999999
Q ss_pred EEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCCCCccccccccccCCCCC
Q 004579 241 CILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDF 320 (744)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt~~H~l~~~l~~~~~~d~ 320 (744)
|++++++|+.+.+++++...++.++||||+||||++++++.+++|+++|||||+|||++||||++|++|++|++.|++||
T Consensus 305 ~~L~~r~P~~~~~~~~~~~~~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~GRWDT~~H~lf~~Ldt~h~~Df 384 (808)
T PLN02270 305 CILCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDF 384 (808)
T ss_pred EEEcCCCcccccceeeccccccccccceeEEEEccCCccccccccceEEEEcceeccCCcccCccccccccccccccccc
Confidence 99999999888888888888999999999999999887766679999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcCCCCCCCCeeeeeeeeeChHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCCCCCCCceeee
Q 004579 321 HQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQL 400 (744)
Q Consensus 321 ~~~~~~~~~~~~~~~r~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~vQv 400 (744)
+||+|.+++++.++||+||||+||+|+||+|++|+.+|++||+.++++.++....+++++..|+++...|++.++|+||+
T Consensus 385 ~~p~~~~~~~~~g~Pr~PWhDvh~rVeGPaa~dL~~~F~~rW~~atg~~ll~~~~~~~~~~~P~~~~~~p~d~~~w~VQv 464 (808)
T PLN02270 385 HQPNFTGASITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWSKQGGKDILVQLRELEDVIIPPSPVMFPDDHEVWNVQL 464 (808)
T ss_pred cCcccccccccCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHhhcCccchhhhcccccccCCCCcccCCCcCCccccce
Confidence 99999998888889999999999999999999999999999999998876655566666666665555677889999999
Q ss_pred eecccCCcccCCCCChHHHhhcccccCCCCcchhHHHHHHHHHHHhcccEEEEeeccccccccccccCCCCcchhhhccc
Q 004579 401 FRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHL 480 (744)
Q Consensus 401 ~rS~~~~~~~~~p~~p~~~~~~~l~~~~~~~~e~sI~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~ 480 (744)
|||++.+++++||..|++++++|+++|++...++||+.+|++||++||||||||||||++++++|+++++++++.++.|+
T Consensus 465 fRSid~g~a~~~P~~~~~~~~~~lv~g~~~~~~rsI~~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nl 544 (808)
T PLN02270 465 FRSIDGGAAFGFPETPEAAAEAGLVSGKDNIIDRSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHL 544 (808)
T ss_pred eecccchhhccCCCCcchhhhcceeccCCCchhhHHHHHHHHHHHhhhhEEEeehhhhhhhhhhhccccccccccccccc
Confidence 99999999999999999999999999999888999999999999999999999999999999999877888899999999
Q ss_pred chHHHHHHHHHHHHhCCceEEEEEecCCCCCCCCCchhHHHHHHHHhhhhhhHHHHHHHHHHcCCCCCCCCceEEeecCC
Q 004579 481 IPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGN 560 (744)
Q Consensus 481 i~~~la~~ia~a~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~Gv~~~p~~yl~~~~l~~ 560 (744)
||++|+++|+++++++++|+||||+|+||||.+++.++|+||+||++||+|||.+++++|+++|+..+|+|||+||||||
T Consensus 545 Ip~el~~kI~~ri~~~e~f~VyIViP~~peG~~e~~~vq~il~wq~~TM~~~~~~I~~~Lk~~g~~~dp~dyL~ff~L~n 624 (808)
T PLN02270 545 IPKELSLKIVSKIEAGEKFTVYVVVPMWPEGIPESGSVQAILDWQRRTMEMMYKDVIQALRAKGLEEDPRNYLTFFCLGN 624 (808)
T ss_pred chHHHHHHHHHHHhCCCCCEEEEEECCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCccceEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998779999999999999
Q ss_pred cccccCCccCCCCCCCCchhHHHHHhhcceeeEeeeeEEEEeceEEEEcCccCCcccccCCCCcceEEEeecCCcccCCC
Q 004579 561 REVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRV 640 (744)
Q Consensus 561 ~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK~mIVDD~~~iIGSANin~RS~~g~rDsEi~l~i~d~~~~~~~~ 640 (744)
||....++|.|...|.++++|.++|++||+|||||||+|||||+|++|||||||+|||.|+|||||+|++|||.++++..
T Consensus 625 re~~~~g~~~P~~~~~~~~~~~~aq~~rr~~I~vH~K~~ivDd~~~~iGSaN~n~rS~~G~rDSEIam~a~qp~~~~~~~ 704 (808)
T PLN02270 625 REVKKSGEYEPSEKPEPDTDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLSTRQ 704 (808)
T ss_pred cccccCcccCCccCCcccchhhhhhhccceeEEEeeeEEEEcCCEEEEeccccccccccCCccchhhhcccCcccccccc
Confidence 99988889999878888889999999999999999999999999999999999999999999999999999999887656
Q ss_pred CccchHHHHHHHHHHHhcCCCccccCCCCcHHHHHHHHHHHHHhHhhhcccccCCCCCcceecCccccCCCCCcccCCCC
Q 004579 641 PARGQIHGFRMSLWYEHLGMLDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGT 720 (744)
Q Consensus 641 ~~~~~~~~lR~~Lw~ehlG~~~~~~~~p~s~~~~~~~~~~a~~n~~~~~~~~~~~~~~g~L~~~p~~~~~~~~~~~~~~~ 720 (744)
.+|++|++|||+||+||||+.++.|.+|+|++|+++||++|++||++|+++++..+|+|||++||+.|+.||+|++|||+
T Consensus 705 ~~r~~i~~~R~~Lw~EHLG~~~~~f~~p~s~~cv~~v~~~a~~~w~~y~~~~~~~~~~ghl~~yp~~v~~~g~v~~l~g~ 784 (808)
T PLN02270 705 PARGQIHGFRMSLWYEHLGMLDETFLDPESEECIQKVNQIADKYWDLYSSETLEHDLPGHLLRYPIGVASEGDITELPGT 784 (808)
T ss_pred chHHHHHHHHHHHHHHHhCCChhHhhCCCcHHHHHHHHHHHHHHHHHhcccccCCCCCcccccCceEecCCCcEeeCCCC
Confidence 77999999999999999999999999999999999999999999999999998678999999999999999999999999
Q ss_pred CCCCCCCCceecccCCCCCCCCCC
Q 004579 721 EFFPDTKARVLGTKSDYMPPVLTT 744 (744)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~ 744 (744)
|+||||+|+|||++|.+||++|||
T Consensus 785 ~~fpd~~~~v~g~~~~~~p~~ltt 808 (808)
T PLN02270 785 EFFPDTKARVLGAKSDYLPPILTT 808 (808)
T ss_pred CcCCCCCCceeccccccCCccccC
Confidence 999999999999999999999997
No 2
>PLN03008 Phospholipase D delta
Probab=100.00 E-value=3.3e-184 Score=1560.60 Aligned_cols=726 Identities=48% Similarity=0.873 Sum_probs=674.2
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCCCCCCeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEEEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVK 80 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV~ 80 (744)
||+| +.||+|||+|+|+|+|+++.|+|+|||+|.+|+++||+++||+++|.+|+.+++|++|++++|||+|.+++|||.
T Consensus 95 Vi~n-~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~kl~v~ 173 (868)
T PLN03008 95 VLKN-SQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIFID 173 (868)
T ss_pred eCCC-CCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcEEEEE
Confidence 5788 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccccccccccccc-cccCCccccccccccCCeeeEcccccCCCCCCCccccCCCcccChhhHHHHHHHHHHhccc
Q 004579 81 LQYFDVTKDRSWARGIRS-AKYPGVPFTFYPQRKGCKVSLYQDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARH 159 (744)
Q Consensus 81 lqf~p~~~~~~w~~~i~~-~~~~gv~~~~~~~r~G~~v~l~~d~~~~~~~~p~~~~~~g~~~~~~~~~~~l~~aI~~Ak~ 159 (744)
|||+|+..++.|..||.+ +.|.|||.+|||+|.||+||||||||++++|+|.|+|.+|+.|++++|||+|++||++||+
T Consensus 174 lqf~pv~~~~~~~~gv~~~~~~~gvp~t~Fp~r~g~~VtlYqdAhv~d~~~p~i~l~~g~~y~~~rcwedi~~AI~~Ak~ 253 (868)
T PLN03008 174 MKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWEDICYAISEAHH 253 (868)
T ss_pred EEEEEccccccccccccCCcCCCCCCCccccCCCCCEeEEeccCCCCCCCCCccccCCCccccccccHHHHHHHHHhhhh
Confidence 999999999999999988 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCcccc--ccccccccCCCcHHHHHHhcCC
Q 004579 160 MIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVS--LLKKDGLMATHDEETEKFFQGT 237 (744)
Q Consensus 160 ~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~--~~~~~g~~~~~~~~~~~~l~~~ 237 (744)
+|||++|+++|++||+|++..+. +.+.+|+++|++||+|||+|+|||||+.+|.. .+++.|+|.||+++++++|+++
T Consensus 254 ~IyI~gWsl~~ei~L~R~~~~~~-~~~~~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~~~~~~g~m~thdeet~~~f~h~ 332 (868)
T PLN03008 254 MIYIVGWSIFHKIKLVRETKVPR-DKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGTHDEETRKFFKHS 332 (868)
T ss_pred eEEEeceeecceeEEecCCCCCC-CCCccHHHHHHHHHHCCCEEEEEEecccccccccccccccccccccHHHHHhhcCC
Confidence 99999999999999999875322 24789999999999999999999999999872 3678999999999999999999
Q ss_pred CcEEEEcCCCCCCCCcceeee-----------cccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCCCCc
Q 004579 238 DVHCILCPRNPDDGGSFIQDI-----------QISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFH 306 (744)
Q Consensus 238 gV~~~~~~~~~~~~~~~~~~~-----------~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt~~H 306 (744)
+|+|.+||++++...+++++. ...++++||||+||||+++++ ++|+++|||||+|||++||||++|
T Consensus 333 ~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~---~~r~~vAFvGGiDLc~gRwDT~~H 409 (868)
T PLN03008 333 SVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVG---NNRKVTAFIGGLDLCDGRYDTPEH 409 (868)
T ss_pred CeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCC---CccceEEEEcceeccCCccCCcCC
Confidence 999999999988888877763 455889999999999997554 579999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeChHHHHHHHHHHHHHHHhcCC---------------ccc
Q 004579 307 SLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGK---------------DVL 371 (744)
Q Consensus 307 ~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~~~---------------~~l 371 (744)
++|+++++.+++||+||++++ ..++|++||||+||+|+||||++|+.+|++||++++++ +.+
T Consensus 410 ~l~~~l~t~~~~D~~np~~~~---~~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~aTg~~~~~~~~k~~~~~~~d~l 486 (868)
T PLN03008 410 RILHDLDTVFKDDFHNPTFPA---GTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQDDAL 486 (868)
T ss_pred CccccccccccccccCccccC---CCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHHhhCccccccccccccccccchh
Confidence 999999999999999999864 45678999999999999999999999999999999873 344
Q ss_pred ccccccCCCCCCCC--------------CCCCC---CCCCCceeeeeecccCCcccCCCCChHHHhhcccccCCCCcchh
Q 004579 372 VHLRELGDIIIPPS--------------PVMYP---DDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDR 434 (744)
Q Consensus 372 ~~~~~~~~~~~p~~--------------~~~~~---~~~~~~~vQv~rS~~~~~~~~~p~~p~~~~~~~l~~~~~~~~e~ 434 (744)
..+.++++++.|+. +...+ +++++|+||+|||++.|++++||..+++++.++|+||++..+|+
T Consensus 487 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~w~vQifRSId~~sa~g~P~~~~~~~~~~l~~gk~~~ie~ 566 (868)
T PLN03008 487 IRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAKRLVVDK 566 (868)
T ss_pred cchhhcccccCCCccccccccccccCCCCccCccccCCCCccccceeeecCchhhcCCCCCcchhhhhccccccccchhh
Confidence 55666777665531 11112 46789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccEEEEeeccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEecCCCCCCCC
Q 004579 435 SIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPE 514 (744)
Q Consensus 435 sI~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP~~p~g~~~ 514 (744)
||++||++||++||||||||||||++++++|+++ ++.++.|+||++|+++|+++++++++|+||||+|+||||.++
T Consensus 567 SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~----~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IViP~~peG~~~ 642 (868)
T PLN03008 567 SIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSY----RDAGADNLIPMELALKIVSKIRAKERFAVYVVIPLWPEGDPK 642 (868)
T ss_pred hHHHHHHHHHHhhccEEEEehhhhhccccccccc----cccccccchhHHHHHHHHHHHhCCCCCEEEEEECCCCCCCCC
Confidence 9999999999999999999999999999999887 788999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHhhhhhhHHHHHHHHHHcCCCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcceeeEe
Q 004579 515 SGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYV 594 (744)
Q Consensus 515 ~~~~~~i~~~~~rt~~~~~~~i~~~L~~~Gv~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyv 594 (744)
++++|+||+||++||+|||.+|+++|+++|.+.+|+|||+||||||||... +...+.+++.+..+|++||+||||
T Consensus 643 sg~vq~Il~wq~~TM~~~~~~I~~~L~~~~~d~~p~dyl~fy~L~~~e~~~-----~~~~~~~~~~~~~a~~~rr~~IYv 717 (868)
T PLN03008 643 SGPVQEILYWQSQTMQMMYDVIAKELKAVQSDAHPLDYLNFYCLGKREQLP-----DDMPATNGSVVSDSYNFQRFMIYV 717 (868)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccCEEEEeccccccccc-----CCCCCCCCchhhhhhhccceeEEE
Confidence 999999999999999999999999999998878999999999999998752 122334567788899999999999
Q ss_pred eeeEEEEeceEEEEcCccCCcccccCCCCcceEEEeecCCcccCC--CCccchHHHHHHHHHHHhcCCCccccCCCCcHH
Q 004579 595 HAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTR--VPARGQIHGFRMSLWYEHLGMLDDTFLQPESSE 672 (744)
Q Consensus 595 HSK~mIVDD~~~iIGSANin~RS~~g~rDsEi~l~i~d~~~~~~~--~~~~~~~~~lR~~Lw~ehlG~~~~~~~~p~s~~ 672 (744)
|||+|||||++++|||||||+|||.|+||||+++.+||+.++++. +.+||+|++|||+||+||||+.++.|.+|+|+|
T Consensus 718 HsK~~ivDd~~~~iGSaN~n~RS~~~~Rd~E~~~~~~~~~~~~~~~~~~~rg~I~g~R~sLwaEHLG~~~~~~~~p~s~e 797 (868)
T PLN03008 718 HAKGMIVDDEYVLMGSANINQRSMAGTKDTEIAMGAYQPNHTWAHKGRHPRGQVYGYRMSLWAEHLGKTGDEFVEPSDLE 797 (868)
T ss_pred eeeEEEECCCEEEEeccccCHhhccCCCCceEeEEeccccccccccCcchhhHHHHHHHHHHHHHhCCCHHHccCCCCHH
Confidence 999999999999999999999999999999999999999998753 478999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhcccccCCCCCcceecCccccCCCCCcccCCCCCCCCCCCCceecccCCCCCCCCCC
Q 004579 673 CVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGTKSDYMPPVLTT 744 (744)
Q Consensus 673 ~~~~~~~~a~~n~~~~~~~~~~~~~~g~L~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (744)
|+++||++|++||++|+++++ ++|+|||++||+.|+.||+|++|||+|+||||+|+|||++|.+||++|||
T Consensus 798 cv~~vn~~a~~~w~~y~~~~~-~~~~ghl~~yp~~v~~~g~v~~l~g~~~fpd~~~~v~g~~~~~lp~~ltt 868 (868)
T PLN03008 798 CLKKVNTISEENWKRFIDPKF-SELQGHLIKYPLQVDVDGKVSPLPDYETFPDVGGKIIGAHSMALPDTLTT 868 (868)
T ss_pred HHHHHHHHHHHHHHHhhcccc-ccCCcccccCceEecCCCcEeeCCCCCcCCCCCCceeccccccCCccccC
Confidence 999999999999999999997 78999999999999999999999999999999999999999999999997
No 3
>PLN02352 phospholipase D epsilon
Probab=100.00 E-value=1.1e-178 Score=1516.02 Aligned_cols=700 Identities=46% Similarity=0.871 Sum_probs=643.1
Q ss_pred CCCCCCCccceeEEEecccCC-ceEEEEEEeCCCCCCeeEEEEEeecccccCCCc-cceEEecccCCCCCCCCCceEEEE
Q 004579 3 KKEQSNPRWYESFHIYCAHMA-SNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEE-VDKWVEILDEDRNPISSGSKIHVK 80 (744)
Q Consensus 3 ~n~~~~P~Wne~F~~~~ah~~-~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~-v~~w~~l~~~~~k~~k~~~~IrV~ 80 (744)
+| +.||+|||+|+|||||++ ++|+|+||| |+++||+++|||++|++|+. |++||||++++|||++. .+|||.
T Consensus 53 ~~-~~~p~w~e~f~i~~ah~~~~~~~f~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~ 126 (758)
T PLN02352 53 SH-EYDRVWNQTFQILCAHPLDSTITITLKT----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-LKLRFM 126 (758)
T ss_pred CC-CCCCccccceeEEeeeecCCcEEEEEec----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-CEEEEE
Confidence 46 669999999999999999 899999999 69999999999999999976 99999999999999966 999999
Q ss_pred EEeecccccccccccccccccCCccccccccccCCeeeEcccccCCCCCCCccccCCCcccChhhHHHHHHHHHHhcccE
Q 004579 81 LQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLYQDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHM 160 (744)
Q Consensus 81 lqf~p~~~~~~w~~~i~~~~~~gv~~~~~~~r~G~~v~l~~d~~~~~~~~p~~~~~~g~~~~~~~~~~~l~~aI~~Ak~~ 160 (744)
+||+|+..++.|..||..+.|.|||.+|||+|.||+|+||||+|++++|+|.|++ .|.+++||++|++||++|||+
T Consensus 127 ~~~~~~~~~~~~~~g~~~~~~~gvp~~~f~~r~g~~v~lyqdah~~~~~~p~i~l----~~~~~~~f~al~eAI~~Ar~s 202 (758)
T PLN02352 127 LWFRPAELEPTWCKILENGSFQGLRNATFPQRSNCHVILYQDAHHCSTFQPPVDL----CGSPRKLWEDVYKAIEGAKHL 202 (758)
T ss_pred EEEEEhhhCcchhhcccCCCcCCcCCcccccCCCCEEEEEecCCCccccCCccee----ecCHHHHHHHHHHHHHhhccE
Confidence 9999999999999999999999999999999999999999999999999999988 577789999999999999999
Q ss_pred EEEEEeccCcceEEeeCCCCCCC-CchhHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccCCCcHHHHHHhcCCCc
Q 004579 161 IYITGWSVYTEISLVRDSRRPKP-GGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDV 239 (744)
Q Consensus 161 I~I~~w~~~~~~~L~r~~~~~~~-~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~g~~~~~~~~~~~~l~~~gV 239 (744)
|||++|+|+++++|+|++..+.+ +.+.+|+++|++||+|||+|+||+||+.++..+++..|+|.+|++++.++|++++|
T Consensus 203 I~I~gW~~d~~i~L~R~~~~~~p~~~g~~LgdLLk~KA~eGV~VrLLvWDd~~s~~~~~~~g~m~th~~~~~~~f~h~~V 282 (758)
T PLN02352 203 IYIAGWSFNPKMVLVRDPETDIPHARGVKLGELLKRKAEEGVAVRVMLWDDETSLPIIKNKGVMGTHDEDAFAYFKHTKV 282 (758)
T ss_pred EEEEEEEecCCceeccCcccccccccchHHHHHHHHHHHCCCEEEEEEEcCCCcccccccccccccchHHHHhhccCCce
Confidence 99999999999999998754333 35799999999999999999999999999987778889999999999999999999
Q ss_pred EEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCCCCcccccccccc-CCC
Q 004579 240 HCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLDTA-HHD 318 (744)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt~~H~l~~~l~~~-~~~ 318 (744)
+|+++|+... ..++.++||||+||||+++++ ++++|+++|||||+|||++||||++|++|+++++. |++
T Consensus 283 ~~~l~pr~~~---------~~~~~~SHHQK~VVID~~~~~-~~~~r~~vAFVGGIDLc~GRwDT~~H~l~d~l~t~~~~~ 352 (758)
T PLN02352 283 VCKLCPRLHK---------KFPTLFAHHQKTITVDTRAND-SISEREIMSFVGGLDLCDGRYDTEEHSLFRTLNTESHCQ 352 (758)
T ss_pred EEeecccccc---------ccccccccccceEEEccCCCC-CccccceEEEEcceeccCCccCCccCCcccccccccccc
Confidence 9999987642 356789999999999997553 23478899999999999999999999999999986 679
Q ss_pred CCCCCCCCCCCcCCCCCCCCeeeeeeeeeChHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCCCCCCCcee
Q 004579 319 DFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNV 398 (744)
Q Consensus 319 d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~v 398 (744)
||+|++|.++..+.++||+||||+||+|+||||+||+.||+||||++++.+.+.+..++.++..++. ..+.+.++|+|
T Consensus 353 Df~~~~~~g~~~~~g~PR~PWHDvh~~V~GpAA~Dv~~~F~qRW~~~~~~~~l~p~~~~~~~~~~p~--~~~~~~~~w~V 430 (758)
T PLN02352 353 DFYQTSIAGAKLQKGGPREPWHDAHACIVGEAAWDVLTNFEQRWTKQCNPSVLVPTSSIRNLVHQPG--SSESNNRNWKV 430 (758)
T ss_pred cccccccccccCCCCCCCCCcEeEEEEEECHHHHHHHHHHHHHHhhccCccccCCcccccccccCCC--CCcccCCcccc
Confidence 9999999988778889999999999999999999999999999999998766555444443332111 11235689999
Q ss_pred eeeecccCCcccCCCCChHHHhhcccccCCCCcchhHHHHHHHHHHHhcccEEEEeeccccccccccccCCCCcchhhhc
Q 004579 399 QLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINAL 478 (744)
Q Consensus 399 Qv~rS~~~~~~~~~p~~p~~~~~~~l~~~~~~~~e~sI~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~ 478 (744)
|++||++.|++.+||.. ...++||++||++||++||||||||||||++++++|+++ ++.++.
T Consensus 431 Qv~RSid~~sa~~~P~~--------------~~~erSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~----~~~~~~ 492 (758)
T PLN02352 431 QVYRSIDHVSASHMPRN--------------LPVERSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKD----NHCGCT 492 (758)
T ss_pred eEEEecCccccccCCCC--------------CchhhHHHHHHHHHHHhhhhEEEEehhhhhccccccccc----cccchh
Confidence 99999999999999852 235899999999999999999999999999999999887 788999
Q ss_pred ccchHHHHHHHHHHHHhCCceEEEEEecCCCCCCCCCchhHHHHHHHHhhhhhhHHHHHHHHHHcCCCCCCCCceEEeec
Q 004579 479 HLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCL 558 (744)
Q Consensus 479 n~i~~~la~~ia~a~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~Gv~~~p~~yl~~~~l 558 (744)
|+||++|+++|+++++++++|+||||+|+||+|.+++.++|+||+||++||+|||.+|.++|+++|.+.+|+|||+||||
T Consensus 493 N~I~~eIa~kI~~kir~~e~f~V~IViP~~PeG~~e~~~vq~il~wq~~TM~~~y~~I~~~L~~~g~~~~P~dYl~F~cL 572 (758)
T PLN02352 493 NLIPIEIALKIASKIRAKERFAVYILIPMWPEGVPESEPVQDILHWTRETMAMMYKLIGEAIQESGEPGHPRDYLNFFCL 572 (758)
T ss_pred cchHHHHHHHHHHHHhCCCCCEEEEEECCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCChhHheeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987789999999999
Q ss_pred CCcccccCCccCCCCCCCCchhHHHHHhhcceeeEeeeeEEEEeceEEEEcCccCCcccccCCCCcceEEEeecCCcccC
Q 004579 559 GNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLST 638 (744)
Q Consensus 559 ~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK~mIVDD~~~iIGSANin~RS~~g~rDsEi~l~i~d~~~~~~ 638 (744)
||||.+..++|.+...|...+.|..+|++||||||||||+|||||++++|||||||+|||.|+|||||+|+++|+.+..+
T Consensus 573 ~n~e~~~~g~~~~~~~p~~~~~~~~~~~~rr~~IYVHSKlMIVDD~~viIGSANIN~RSM~G~rDSEia~~~~~~~~~~~ 652 (758)
T PLN02352 573 ANREEKRKGEFVPPYSPHQKTQYWNAQKNRRFMVYVHSKLMIVDDTYILIGSANVNQRSMDGCRDTEIAIGCYQSKNGTN 652 (758)
T ss_pred cccccccCCccccccCCCCCchhhhcccccceeEEEeeeEEEEcCcEEEEcccccccccccCcccchhhhcccccccCCC
Confidence 99998877888776677777888999999999999999999999999999999999999999999999999999987643
Q ss_pred CCCccchHHHHHHHHHHHhcCCCccccCCCCcHHHHHHHHHHHHHhHhhhcccccCCCCCc-ceecCccccCCCCCcccC
Q 004579 639 RVPARGQIHGFRMSLWYEHLGMLDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPG-HLLRYPIGVSGEGDVTEL 717 (744)
Q Consensus 639 ~~~~~~~~~~lR~~Lw~ehlG~~~~~~~~p~s~~~~~~~~~~a~~n~~~~~~~~~~~~~~g-~L~~~p~~~~~~~~~~~~ 717 (744)
...++++++|||+||+||||+.++.|.+|+|+||++++|++|++||++|+++++ ++|+| ||++||+.|++||+|++|
T Consensus 653 -~~~~~~i~~~R~~L~~EHLG~~~~~f~~p~s~ec~~~v~~~~~~~w~~y~~~~~-~~~~g~hl~~yp~~v~~~g~v~~l 730 (758)
T PLN02352 653 -TNNPRDIQAYRMSLWYEHTGLDEESFLEPESLECVRRLRTIGEQMWEIYSGEEV-VDMEGVHLVNYPISVTKDGAVEDL 730 (758)
T ss_pred -cccchHHHHHHHHHHHHHhCCCHHHhcCCCCHHHHHHHHHHHHHHHHhhccchh-ccCCCcccccCCeEecCCcceeec
Confidence 345689999999999999999999999999999999999999999999999997 78999 999999999999999999
Q ss_pred -CCCCCCCCCCCceecccCCCCCCCCCC
Q 004579 718 -PGTEFFPDTKARVLGTKSDYMPPVLTT 744 (744)
Q Consensus 718 -~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (744)
||+|+||||+|+|||++|.+||++|||
T Consensus 731 ~~g~~~fpd~~~~v~g~~~~~~p~~lt~ 758 (758)
T PLN02352 731 ADGDGNFPDTKTPVKGRRSKMLPPVFTT 758 (758)
T ss_pred CCCCcCCCCCCCceeccccccCCccccC
Confidence 699999999999999999999999997
No 4
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=100.00 E-value=1.7e-155 Score=1317.21 Aligned_cols=676 Identities=51% Similarity=0.870 Sum_probs=623.7
Q ss_pred CCCCccceeEEEecccCCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEEEEEEee
Q 004579 6 QSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQYF 84 (744)
Q Consensus 6 ~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV~lqf~ 84 (744)
-.+|.|+++|++.|+|.+..++|+||+++++| +.++|.+++|+.++++|..+++|++|++.++++++.+..+.+.++|+
T Consensus 161 ~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~ 240 (887)
T KOG1329|consen 161 LENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWFPILDNDGKPHQKGSNESLRLGFT 240 (887)
T ss_pred cccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccceeeeeccCCccccCCcccceEEeeE
Confidence 48999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccc-cccCCccccccccccCCeeeEcccccCCCCCCCccccCCCcccC-hhhHHHHHHHHHHhcccEEE
Q 004579 85 DVTKDRSWARGIRS-AKYPGVPFTFYPQRKGCKVSLYQDAHVPDNFVPEIPLAGGKYYE-PHRCWEDIFDAITNARHMIY 162 (744)
Q Consensus 85 p~~~~~~w~~~i~~-~~~~gv~~~~~~~r~G~~v~l~~d~~~~~~~~p~~~~~~g~~~~-~~~~~~~l~~aI~~Ak~~I~ 162 (744)
+......|..++.+ ..+.|++.++|+++.||.|++|||+|++++|+|.+++++|++|. +..||+++++||++||+.||
T Consensus 241 ~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~g~gv~~~qd~Hr~~sf~P~r~~~~~kw~vd~~~~~edi~dAI~~Ar~~Iy 320 (887)
T KOG1329|consen 241 PMEKDRNLKLGCKSGRSFRGWPGTIFPQRKGCGVTLYQDAHRFDSFAPVRTLDGGKWFVDGKKYWEDVADAIENARREIY 320 (887)
T ss_pred eechhhhhhheeccccccCCccceeeehhccCceeeeecccccCCcCCcccCCCceEEEchhhHHHHHHHHHHhhhhEEE
Confidence 99999999999998 89999999999999999999999999999999999999999665 56799999999999999999
Q ss_pred EEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccCCCcHHHHHHhcCCCcEEE
Q 004579 163 ITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVHCI 242 (744)
Q Consensus 163 I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~g~~~~~~~~~~~~l~~~gV~~~ 242 (744)
|++||++|++||+|+...+ .+.||+++||+||++||+|+|||||++++... .+++++++..+++|++|+|.
T Consensus 321 ItgWwl~pel~L~Rp~~~~---~~~rLdelLK~KAeeGVrV~ilv~kdv~s~~~------i~S~~~k~~l~~lH~nV~vl 391 (887)
T KOG1329|consen 321 ITGWWLSPELYLVRPPKGP---NDWRLDELLKRKAEEGVRVLILVWKDVTSALG------INSHYEKTRLFFLHPNVKVL 391 (887)
T ss_pred EeccccCceEEEEccCCCC---CceEHHHHHHHHHhCCcEEEEEEeccchhccc------cCchhHHHHHhhcCCCeEEE
Confidence 9999999999999987642 48999999999999999999999999998754 34688899999999999999
Q ss_pred EcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCCCCccccccccccCCCCCCC
Q 004579 243 LCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQ 322 (744)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt~~H~l~~~l~~~~~~d~~~ 322 (744)
+||+++.++. .++|+||||+||||.+ +|||||+|||+|||||++|+||+++.+.|++||+|
T Consensus 392 r~P~~~~~~~--------~~~wtHHeK~VVVD~~-----------v~fvGGlDLC~GRYDT~eH~L~d~~~~~~gkDy~n 452 (887)
T KOG1329|consen 392 RCPRHPGSGP--------TTLWTHHEKLVVVDQE-----------VAFVGGLDLCDGRYDTPEHPLFDTLQTWHGKDYHN 452 (887)
T ss_pred ECCCCcCCCC--------ceEEecceEEEEEcce-----------eccccceeccccccCCccccccccccccccccccC
Confidence 9999876431 3689999999999999 99999999999999999999999999999999999
Q ss_pred CCCCCCC--cCCCCCCCCeeeeeeeeeChHHHHHHHHHHHHHHHhcCCc-----ccccccccCCCCCCCCCCCCCCCCCC
Q 004579 323 PNFPGAS--IEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKD-----VLVHLRELGDIIIPPSPVMYPDDHDT 395 (744)
Q Consensus 323 ~~~~~~~--~~~~~~r~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~~~~-----~l~~~~~~~~~~~p~~~~~~~~~~~~ 395 (744)
|+|.++. .+.++|||||||+||+|.||+|+||++||+||||+++..+ .+..+.+.+++..|+.+ .+++++.
T Consensus 453 ~~~~~~~~~dr~~~PRmPWHDvh~~v~G~~ArDvarhF~QRWn~~~~~K~~~~~~~p~L~p~~~~~~~~~~--~~~~~e~ 530 (887)
T KOG1329|consen 453 PNFKDFVDIDRKGGPRMPWHDVHCKVDGPAARDVARHFEQRWNKQKREKKPYDDSLPLLLPISDITGPSEP--NEEDPES 530 (887)
T ss_pred cccccchhcccCCCCCCCceeeeeeeeChhHHHHHHHHHHHHHHHhcccCCCCccceeecChhhhcCCCCc--ccccccc
Confidence 9999865 6788999999999999999999999999999999997531 22122223333334332 3467889
Q ss_pred ceeeeeecccCCcccCCCCChHHHhhcccccCCCCcchhHHHHHHHHHHHhcccEEEEeeccccccccccccCCCCcchh
Q 004579 396 WNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEI 475 (744)
Q Consensus 396 ~~vQv~rS~~~~~~~~~p~~p~~~~~~~l~~~~~~~~e~sI~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~ 475 (744)
|++|++||++++++.+ ++..+++|++|++...+|+|||+||+++|++||||||||||||+++++.|..
T Consensus 531 ~~~q~f~si~~gs~~~----~qvlrs~g~wS~g~~~~e~SIq~AYv~~Ir~a~hFIYIENQfFi~ss~~~~~-------- 598 (887)
T KOG1329|consen 531 WHVQVFRSIDGGSVAG----PQVLRSAGLWSGGINEIEDSIQNAYVKAIRNAEHFIYIENQFFIGSSFNWDS-------- 598 (887)
T ss_pred ccccceeeccCCcccc----hHHhhhhcccccCCCchHHHHHHHHHHHHHhccceEEEeeeeEEeeccCCCc--------
Confidence 9999999999998766 7888899999999999999999999999999999999999999999998764
Q ss_pred hhcccchHHHHHHHHHHHHhCCceEEEEEecCCC--CC--CCCCchhHHHHHHHHhhhhhhHHHHHHHHHHcCCC-CCCC
Q 004579 476 NALHLIPKELSLKIVSKIEAGERFTVYIVVPMWP--EG--FPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIM-EDPR 550 (744)
Q Consensus 476 ~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP~~p--~g--~~~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~Gv~-~~p~ 550 (744)
..|.++++||++|++|+++|++|+||||||+|| || .+++.++|+||+||+|||+|||++|+++|++.|++ .+|.
T Consensus 599 -~~n~v~~ela~rIv~a~ra~e~frVYIVIPL~PgfEG~~~p~~~svqaIl~wQyrTms~g~~sI~~~Lka~g~d~~~yi 677 (887)
T KOG1329|consen 599 -VLNKVGDELALRIVKAIRAGEKFRVYIVIPLWPGFEGDDTPGSGSVQAILHWQYRTMSMGYKSIYKALKAVGLDPADYI 677 (887)
T ss_pred -ccchHHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCCCCcchHHHHHHHHHHHHhhhHHHHHHHHHHhcCCccccc
Confidence 368889999999999999999999999999999 99 88999999999999999999999999999999998 6799
Q ss_pred CceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcceeeEeeeeEEEEeceEEEEcCccCCcccccCCCCcceEEEe
Q 004579 551 NYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGG 630 (744)
Q Consensus 551 ~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK~mIVDD~~~iIGSANin~RS~~g~rDsEi~l~i 630 (744)
+|++|+|++++|.. +++.++||||||||+|||||+++||||||||+|||.|+|||||||++
T Consensus 678 ~f~~lr~~g~~e~~-------------------~~~~~~emIYVHsK~mIvDD~~vIIGSANINqRSm~G~RDSEIA~~~ 738 (887)
T KOG1329|consen 678 DFLGLRCLGNREEQ-------------------AQRLRREMIYVHSKLMIVDDEYVIIGSANINQRSMLGNRDSEIAMGI 738 (887)
T ss_pred eeeeeeeeeccccc-------------------cccceEEEEEEeeeeEEecCCEEEEeecccchhhccCCccceeEEEE
Confidence 99999999998641 13456899999999999999999999999999999999999999999
Q ss_pred ecCCcccCC--CCccchHHHHHHHHHHHhcCCCccccCCCCcHHHHHHHHHHHHHhHhhhcccccCCCCCcceecCcccc
Q 004579 631 YQPYHLSTR--VPARGQIHGFRMSLWYEHLGMLDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGV 708 (744)
Q Consensus 631 ~d~~~~~~~--~~~~~~~~~lR~~Lw~ehlG~~~~~~~~p~s~~~~~~~~~~a~~n~~~~~~~~~~~~~~g~L~~~p~~~ 708 (744)
||+.++++. +.+.+|+++|||+||+||||+.++.|.+|++++|.+.++.+.+++|..|+++.. +..+|||+.||+++
T Consensus 739 ~d~~~~~s~m~g~p~~f~~~lR~slw~EHLG~~~d~~~~Pe~~ec~dpv~d~~~~~W~~~a~~n~-~~y~~~f~~yP~~~ 817 (887)
T KOG1329|consen 739 YDTNHVWSKMNGRPYGFIYGLRMSLWREHLGLLDDAFEEPESLECEDPVRDLFEDLWQRYAARNT-TIYEGHFRCYPIDV 817 (887)
T ss_pred ecccchhhccCCcchhHHHHHHHHHHHHHhCCCcccccCcchhhhhhhHHHHHHHHHHHHHhhhh-hhhhceEEEccccc
Confidence 999998865 456799999999999999999999999999999999999999999999999996 77999999999999
Q ss_pred CCCCCcccCCCCCCCCCCCCceecccCCCCCCCCCC
Q 004579 709 SGEGDVTELPGTEFFPDTKARVLGTKSDYMPPVLTT 744 (744)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (744)
+.+|+++++||+++|||+++++.|.++..+|++||+
T Consensus 818 ~~~g~~~~~~~~~~~pd~~~~~~~~~~~~~~~~lt~ 853 (887)
T KOG1329|consen 818 VRTGKVTELPGDETFPDTLGKIIGSKSDALPENLTT 853 (887)
T ss_pred ccCcceeecCCccccccccccccccccccCCccccc
Confidence 999999999999999999999999999999999986
No 5
>PLN02866 phospholipase D
Probab=100.00 E-value=1.1e-98 Score=871.78 Aligned_cols=543 Identities=30% Similarity=0.495 Sum_probs=414.4
Q ss_pred EEEEeecccccccccccccccc------cCCcc--ccccccc----cCCeeeEcccccCCCCCCCccccCCCcccChhhH
Q 004579 79 VKLQYFDVTKDRSWARGIRSAK------YPGVP--FTFYPQR----KGCKVSLYQDAHVPDNFVPEIPLAGGKYYEPHRC 146 (744)
Q Consensus 79 V~lqf~p~~~~~~w~~~i~~~~------~~gv~--~~~~~~r----~G~~v~l~~d~~~~~~~~p~~~~~~g~~~~~~~~ 146 (744)
+.++.........|...|.... +.+.- .+|+|.| .||++++|.|| .++
T Consensus 286 l~l~~~s~~~~~~w~~ai~~~~~~~~~~~~~~hRF~SFAP~r~~~~~gN~vk~LvDG--------------------~dy 345 (1068)
T PLN02866 286 IRLRTKSSAKVKDWVAAINDAGLRPPEGWCHPHRFGSFAPPRGLTEDGSQAQWFIDG--------------------HAA 345 (1068)
T ss_pred EEEEECCHHHHHHHHHHHHHHHhccCccccccCcCCCcCCCccccCCCCEEEEEeCH--------------------HHH
Confidence 3444555555677887765421 11211 2455665 57777777774 467
Q ss_pred HHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccCCC
Q 004579 147 WEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATH 226 (744)
Q Consensus 147 ~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~g~~~~~ 226 (744)
|++|++||++||++|+|++||++|++||+|+... ..+.+|+++|++||+|||+||||+||.+++.....
T Consensus 346 F~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~D---~~g~RL~~lL~rKAkrGVkVrVLLyD~vg~al~~~-------- 414 (1068)
T PLN02866 346 FEAIASAIENAKSEIFITGWWLCPELYLRRPFHD---HESSRLDSLLEAKAKQGVQIYILLYKEVALALKIN-------- 414 (1068)
T ss_pred HHHHHHHHHhcccEEEEEEccCCceEEEEecCCC---chHHHHHHHHHHHHHCCCEEEEEEECccccccccC--------
Confidence 8999999999999999999999999999985321 26899999999999999999999999987531111
Q ss_pred cHHHHHHh--cCCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCCC
Q 004579 227 DEETEKFF--QGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTP 304 (744)
Q Consensus 227 ~~~~~~~l--~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt~ 304 (744)
+..+.+.| .++||+|..+|.... ....++|||||+||||++ +||+||+|||.|||||+
T Consensus 415 S~~~k~~L~~lh~gI~V~r~P~~~~---------~~~ln~RhHRKIVVIDg~-----------IAFvGGiNLc~GRWDT~ 474 (1068)
T PLN02866 415 SVYSKRRLLGIHENVKVLRYPDHFS---------SGVYLWSHHEKLVIVDYQ-----------ICFIGGLDLCFGRYDTP 474 (1068)
T ss_pred chhhHHHHHHhCCCeEEEecCcccc---------cCcccccCCCCeEEECCC-----------EEEecCcccCCCccCCc
Confidence 11122223 367999876543210 124689999999999999 99999999999999999
Q ss_pred Ccccccccc-ccCCCCCCCCCCCCC----------CcCCCCCCCCeeeeeeeeeChHHHHHHHHHHHHHHHhcCCcc---
Q 004579 305 FHSLFRTLD-TAHHDDFHQPNFPGA----------SIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDV--- 370 (744)
Q Consensus 305 ~H~l~~~l~-~~~~~d~~~~~~~~~----------~~~~~~~r~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~~~~~--- 370 (744)
+|++.+... -.+++||.||..... -.+...|||||||+||+|+||+|+||+++|++|||.+++...
T Consensus 475 ~H~l~D~~~~~wPGkDY~Npr~~d~~~~~~~~~d~ldR~~~pRmPWHDV~~~V~GpAardLa~hFvqRWN~at~~k~~~~ 554 (1068)
T PLN02866 475 EHRVGDCPPVIWPGKDYYNPRESEPNSWEDTMKDELDRRKYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRNKAPNE 554 (1068)
T ss_pred ccccccccccccCcccccccccccccccccccccccccccCCCCCceEEEEEEECHHHHHHHHHHHHHHHHHhcccCccc
Confidence 999866432 346789988754220 012446789999999999999999999999999998875321
Q ss_pred -----ccccc-----------------------------------------ccCCCCCCCCCCC----------------
Q 004579 371 -----LVHLR-----------------------------------------ELGDIIIPPSPVM---------------- 388 (744)
Q Consensus 371 -----l~~~~-----------------------------------------~~~~~~~p~~~~~---------------- 388 (744)
+.+.. .++ ++.|.++..
T Consensus 555 ~~~~ll~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~llP~~~~~~~~~~~~~~~~~~~~~ 633 (1068)
T PLN02866 555 QAIPLLMPHHHMVIPHYLGGSEEEEIESKNQEDNQKGIARQDSFSSRSSLQDIP-LLLPQEADATDGSGGGHKLNGMNST 633 (1068)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc-cCCCCCccccccccccccccccccc
Confidence 00000 000 011110000
Q ss_pred ---------------------------------------------------------------CC------CCCCCceee
Q 004579 389 ---------------------------------------------------------------YP------DDHDTWNVQ 399 (744)
Q Consensus 389 ---------------------------------------------------------------~~------~~~~~~~vQ 399 (744)
.+ ...+++.+|
T Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~Q 713 (1068)
T PLN02866 634 NGSLSFSFRKSKIEPVLPDTPMKGFVDDLGFLDLSVKMSSAERGSKESDSEWWETQERGDQVGSADEVGQVGPRVSCRCQ 713 (1068)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCeEEEE
Confidence 00 012468899
Q ss_pred eeecccCCcccCCCCChHHHhhcccccCCCCcchhHHHHHHHHHHHhcccEEEEeeccccccccccccCCCCcchhhhcc
Q 004579 400 LFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALH 479 (744)
Q Consensus 400 v~rS~~~~~~~~~p~~p~~~~~~~l~~~~~~~~e~sI~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~n 479 (744)
|+||+..||+ | -..+|+||++||+++|++||||||||||||++++.+ +..+.|
T Consensus 714 ivRS~~~WS~-----------------G-~~~~E~SI~~AYi~~I~~A~hfIYIENQFFis~~~~---------~~~i~N 766 (1068)
T PLN02866 714 VIRSVSQWSA-----------------G-TSQVEESIHAAYCSLIEKAEHFIYIENQFFISGLSG---------DDTIQN 766 (1068)
T ss_pred EEeecccccC-----------------C-CCchHHHHHHHHHHHHHhcccEEEEecccccccccc---------cccccc
Confidence 9999888764 1 112599999999999999999999999999987542 235689
Q ss_pred cchHHHHHHHHHHHHhCCceEEEEEecCCCC--C-CC--CCchhHHHHHHHHhhhhhhHHHHHHHHHHcCCCCCCCCceE
Q 004579 480 LIPKELSLKIVSKIEAGERFTVYIVVPMWPE--G-FP--ESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLT 554 (744)
Q Consensus 480 ~i~~~la~~ia~a~~~g~~v~V~IvlP~~p~--g-~~--~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~Gv~~~p~~yl~ 554 (744)
+|+.+|+++|++|+++|++|+|+||||++|+ | .+ ++.++++||+||++||++|+++|+++|++++ ..+|.||++
T Consensus 767 ~I~~AL~~RI~rA~~~~~~frviIViP~~P~F~G~v~~~~~~svr~Im~~Q~~tI~rG~~Si~~~L~~~~-g~~p~dYis 845 (1068)
T PLN02866 767 RVLEALYRRILRAHKEKKCFRVIIVIPLLPGFQGGVDDGGAASVRAIMHWQYRTICRGKNSILHNLYDLL-GPKTHDYIS 845 (1068)
T ss_pred hHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcCCCCCCccchhHHHHHHHHHHHHHhhHHHHHHHHHHHh-CCCHHHeEe
Confidence 9999999999999999999999999999997 3 22 3468999999999999999999999999853 247899999
Q ss_pred EeecCCcccccCCccCCCCCCCCchhHHHHHhhcceeeEeeeeEEEEeceEEEEcCccCCcccccCCCCcceEEEeecCC
Q 004579 555 FFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPY 634 (744)
Q Consensus 555 ~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK~mIVDD~~~iIGSANin~RS~~g~rDsEi~l~i~d~~ 634 (744)
||||||++....+ .| +. .++||||||+|||||++++|||||||+|||.|+|||||++++.|++
T Consensus 846 f~~LRn~~~l~~~--~~---------~v------teqIYVHsK~~IvDD~~~iiGSaNiN~RS~~G~rDsEia~~~~d~~ 908 (1068)
T PLN02866 846 FYGLRAYGRLFEG--GP---------LA------TSQIYVHSKIMIVDDRAALIGSANINDRSLLGSRDSEIGVVIEDKE 908 (1068)
T ss_pred eecccccccccCC--Cc---------cc------ceeeEEEeeEEEEcCcEEEEccccccccccccCcCcceeeeeeccc
Confidence 9999998654100 01 11 2369999999999999999999999999999999999999999998
Q ss_pred cccCC--C---CccchHHHHHHHHHHHhcCCCcc---ccCCCCcHHHHHH-HHHHHHHhHhhhc----------------
Q 004579 635 HLSTR--V---PARGQIHGFRMSLWYEHLGMLDD---TFLQPESSECVKK-VNQIAERYWDLYS---------------- 689 (744)
Q Consensus 635 ~~~~~--~---~~~~~~~~lR~~Lw~ehlG~~~~---~~~~p~s~~~~~~-~~~~a~~n~~~~~---------------- 689 (744)
++.+. + .+++||++||++||+||||+..+ .+.||.+.++++. |+..|..|.+.|.
T Consensus 909 ~~~s~m~G~~~~ag~fa~~lR~~L~~EHLG~~~~~~~~~~DP~~d~~~k~~W~~~A~~Nt~Iy~~vF~c~P~d~Vr~~~~ 988 (1068)
T PLN02866 909 FVDSSMNGKPWKAGKFAHSLRLSLWSEHLGLRAGEIDKIIDPVCDTTYKDLWMATAKTNTDIYQDVFSCIPNDLIHSRAA 988 (1068)
T ss_pred ccccccCCccccccchhHHHHHHHHHHHhCCCchhhhcccCCccHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccHHH
Confidence 77543 1 56789999999999999999753 5679999988965 8999999997761
Q ss_pred -----c----------------------------------cccCCCCCcceecCccccCCCCCcccCCC
Q 004579 690 -----S----------------------------------ESLEHDLPGHLLRYPIGVSGEGDVTELPG 719 (744)
Q Consensus 690 -----~----------------------------------~~~~~~~~g~L~~~p~~~~~~~~~~~~~~ 719 (744)
+ +.+ ++++|||+.||+++.++.+++|.-+
T Consensus 989 ~~~~~~~~~~~~gh~~i~lg~~~~~~~~~~~~~~~~~~~~~~l-~~I~G~lV~fPL~Fl~~E~L~p~~~ 1056 (1068)
T PLN02866 989 LRQSMASRKEKLGHTTIDLGIAPEKLESYENGDIKSSDPMERL-KSVRGHLVSFPLDFMCQEDLRPVFN 1056 (1068)
T ss_pred HHHHhhhcccccCccccccccccccccccccccchhhhHHHHH-hhceEEEEechhhhhhhccCCCCcC
Confidence 0 112 5789999999999999998877655
No 6
>PRK12452 cardiolipin synthetase; Reviewed
Probab=100.00 E-value=6.4e-54 Score=488.40 Aligned_cols=385 Identities=21% Similarity=0.238 Sum_probs=279.9
Q ss_pred ceEEEEEEeecccccccccccccccccCCcccccc-cc-ccCCee-eE-------cc-----cccCCCCC----------
Q 004579 75 SKIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFY-PQ-RKGCKV-SL-------YQ-----DAHVPDNF---------- 129 (744)
Q Consensus 75 ~~IrV~lqf~p~~~~~~w~~~i~~~~~~gv~~~~~-~~-r~G~~v-~l-------~~-----d~~~~~~~---------- 129 (744)
..+++.++.+++....+|+..|...|+.|++.|++ .. +.+.+. +. +. ........
T Consensus 44 ~~~~i~~~~r~p~~~~aWl~~i~~~P~~G~~lYl~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (509)
T PRK12452 44 ISFVIFIENRSPQSTLAWFLVLALLPVVGVLLYSIFGRSRWRRKKHLHRSEEQRKLFREILEGRRLELSLKVPLSERSVH 123 (509)
T ss_pred HHHhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhHHH
Confidence 33455666788888999999999999999999886 22 111111 00 00 00000000
Q ss_pred -------CCccccCCCcccC----hhhHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhh
Q 004579 130 -------VPEIPLAGGKYYE----PHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKAS 198 (744)
Q Consensus 130 -------~p~~~~~~g~~~~----~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~ 198 (744)
..+.|+..|+..+ .++.|++++++|++||++|+|+.|++. ++. .+..+.++|++||+
T Consensus 124 l~~~~~~~~~~p~~~~n~~~ll~~g~~~~~~l~~~I~~Ak~~I~i~~yi~~-------~d~-----~g~~i~~aL~~aa~ 191 (509)
T PRK12452 124 LTEVVQKFGGGPAADRTTTKLLTNGDQTFSEILQAIEQAKHHIHIQYYIYK-------SDE-----IGTKVRDALIKKAK 191 (509)
T ss_pred HHHHHHhccCCcccCCCEEEEeCCHHHHHHHHHHHHHHhCCEEEEEEEEEe-------CCc-----HHHHHHHHHHHHHH
Confidence 0145666677655 257999999999999999999998763 344 58999999999999
Q ss_pred cCCeEEEEEeCCCccccccccccccCCCcHHHHHHhcCCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCC
Q 004579 199 EGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMP 278 (744)
Q Consensus 199 rGV~VriLvwD~~~s~~~~~~~g~~~~~~~~~~~~l~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~ 278 (744)
|||+||||+ |+.||... .....+.|+++||+|..+.+.... + ...+.++|||||++||||+
T Consensus 192 rGV~VRiL~-D~~Gs~~~----------~~~~~~~L~~aGi~v~~f~P~~~~---~---~~~~~n~RnHRKi~VIDg~-- 252 (509)
T PRK12452 192 DGVIVRFLY-DGLGSNTL----------RRRFLQPMKEAGIEIVEFDPIFSA---W---LLETVNYRNHRKIVIVDGE-- 252 (509)
T ss_pred CCCEEEEEE-ECCCCCCC----------CHHHHHHHHhCCeEEEEecCcccc---c---ccccccCCCCCeEEEEcCC--
Confidence 999999997 99998522 135678899999999887543110 0 1234689999999999999
Q ss_pred CCCCcccceEEEEcccccCCCCCCCCCccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeChHHHHHHHHH
Q 004579 279 NGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNF 358 (744)
Q Consensus 279 ~~~~~~~~~vAfvGGinL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gpaa~dl~~~F 358 (744)
+||+||+|+++.+. .. ..+..+|||+|++++||+|.+++..|
T Consensus 253 ---------ia~~GG~Ni~d~y~-~~----------------------------~~~~~~WrD~~~~i~Gp~V~~l~~~F 294 (509)
T PRK12452 253 ---------IGFTGGLNVGDEYL-GR----------------------------SKKFPVWRDSHLKVEGKALYKLQAIF 294 (509)
T ss_pred ---------EEEeCCcccchhhc-CC----------------------------CCCCCCceEEEEEEECHHHHHHHHHH
Confidence 99999999999643 21 12346899999999999999999999
Q ss_pred HHHHHHhcCCcccccccccC-CCCCCCCCCCCCCCCCCceeeeeecccCCcccCCCCChHHHhhcccccCCCCcchhHHH
Q 004579 359 EQRWRKQGGKDVLVHLRELG-DIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQ 437 (744)
Q Consensus 359 ~~rW~~~~~~~~l~~~~~~~-~~~~p~~~~~~~~~~~~~~vQv~rS~~~~~~~~~p~~p~~~~~~~l~~~~~~~~e~sI~ 437 (744)
.++|+.+++........... ....|+. +...+...+|++.|- +. ..+.+|.
T Consensus 295 ~~dW~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~q~~~sg-----------------------p~-~~~~~i~ 346 (509)
T PRK12452 295 LEDWLYASSGLNTYSWDPFMNRQYFPGK----EISNAEGAVQIVASG-----------------------PS-SDDKSIR 346 (509)
T ss_pred HHHHHHhhCcccccccccccchhcCCCc----cccCCCeEEEEEeCC-----------------------CC-chhHHHH
Confidence 99999886531110000000 0000110 111234568888872 11 2357899
Q ss_pred HHHHHHHHhcccEEEEeeccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEecCCCCCCCCCch
Q 004579 438 DAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGS 517 (744)
Q Consensus 438 ~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP~~p~g~~~~~~ 517 (744)
++|+++|.+||++|||+||||++. + .+..++..|++|| |+|+|++|..+
T Consensus 347 ~~~l~~I~~A~~~I~I~tpYf~pd------~---------------~l~~aL~~Aa~rG--V~Vrii~p~~~-------- 395 (509)
T PRK12452 347 NTLLAVMGSAKKSIWIATPYFIPD------Q---------------ETLTLLRLSAISG--IDVRILYPGKS-------- 395 (509)
T ss_pred HHHHHHHHHhhhEEEEECCccCCC------H---------------HHHHHHHHHHHcC--CEEEEEcCCCC--------
Confidence 999999999999999999999953 2 3456677777899 99999999743
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHcCCCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcceeeEeeee
Q 004579 518 VQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAK 597 (744)
Q Consensus 518 ~~~i~~~~~rt~~~~~~~i~~~L~~~Gv~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK 597 (744)
++.+++|+.++ +++.|+++|+++ ++|.+ .++|||
T Consensus 396 D~~~~~~a~~~-------~~~~L~~aGv~I-------------------~~y~~--------------------~~lHaK 429 (509)
T PRK12452 396 DSIISDQASQS-------YFTPLLKAGASI-------------------YSYKD--------------------GFMHAK 429 (509)
T ss_pred ChHHHHHHHHH-------HHHHHHHcCCEE-------------------EEecC--------------------CCeeee
Confidence 34555666554 678999999986 35654 489999
Q ss_pred EEEEeceEEEEcCccCCcccccCCCCcceEEEeecCCc
Q 004579 598 MMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYH 635 (744)
Q Consensus 598 ~mIVDD~~~iIGSANin~RS~~g~rDsEi~l~i~d~~~ 635 (744)
+|||||++++|||+|||.||+..| +|+++.++++..
T Consensus 430 ~~ivD~~~a~vGS~Nld~RS~~~n--~E~~~~i~~~~~ 465 (509)
T PRK12452 430 IVLVDDKIATIGTANMDVRSFELN--YEIISVLYESET 465 (509)
T ss_pred EEEECCCEEEEeCcccCHhHhhhh--hhccEEEECHHH
Confidence 999999999999999999999866 999999998754
No 7
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=100.00 E-value=6.4e-53 Score=479.35 Aligned_cols=382 Identities=21% Similarity=0.321 Sum_probs=279.6
Q ss_pred ceEEEEEEeecccccccccccccccccCCcccccc-cc-ccCCee-eE-------cc---c---ccCC--C-C-------
Q 004579 75 SKIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFY-PQ-RKGCKV-SL-------YQ---D---AHVP--D-N------- 128 (744)
Q Consensus 75 ~~IrV~lqf~p~~~~~~w~~~i~~~~~~gv~~~~~-~~-r~G~~v-~l-------~~---d---~~~~--~-~------- 128 (744)
..+++.++.+.+....+|+..|...|+.|++.|++ .. +.+.+. +. +. . .+.. . .
T Consensus 20 ~~~~i~~~~r~~~~~~aWl~~i~~~P~~G~~lY~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (483)
T PRK01642 20 VTLRILMKRRTVQGAIAWLLILYILPYVGIIAYLLFGELYLGKRRAERARLMWPSTAKWLRDLKACKHIFAEENSEVAAP 99 (483)
T ss_pred HHHhhHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHHHHHHHHHHHhhhhhhhhhccccCchhHHH
Confidence 34556677788888999999999999999999886 22 111110 00 00 0 0000 0 0
Q ss_pred ------CCCccccCCCcccC----hhhHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhh
Q 004579 129 ------FVPEIPLAGGKYYE----PHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKAS 198 (744)
Q Consensus 129 ------~~p~~~~~~g~~~~----~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~ 198 (744)
-..+.|+..|+..+ .++.|++|+++|++||++|+|+.|++ +++. .+.++.++|++||+
T Consensus 100 ~~~~~~~~~~~~~~~~n~v~ll~~g~~~~~~l~~~I~~Ak~~I~l~~yi~-------~~d~-----~g~~i~~aL~~aa~ 167 (483)
T PRK01642 100 LFRLCERLQGIPGLKGNQLRLLTNGDETFQAIIRDIELARHYILMEFYIW-------RPDG-----LGDQVAEALIAAAK 167 (483)
T ss_pred HHHHHHhccCCCccCCCEEEEEcCHHHHHHHHHHHHHHhhcEEEEEEEEE-------ccCC-----cHHHHHHHHHHHHH
Confidence 00145666777655 26799999999999999999999876 3343 58999999999999
Q ss_pred cCCeEEEEEeCCCccccccccccccCCCcHHHHHHhcCCCcEEEEc-CCCCCCCCcceeeecccccccCceeEEEEcCCC
Q 004579 199 EGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVHCILC-PRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPM 277 (744)
Q Consensus 199 rGV~VriLvwD~~~s~~~~~~~g~~~~~~~~~~~~l~~~gV~~~~~-~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~ 277 (744)
|||+||||+ |+.|+..+. .....+.|+++||++..+ |..+. . ....+.++|+|||++|||++
T Consensus 168 rGV~VriL~-D~~Gs~~~~---------~~~~~~~L~~~Gi~v~~~~p~~~~---~---~~~~~~n~RnHrKi~VIDg~- 230 (483)
T PRK01642 168 RGVRVRLLY-DSIGSFAFF---------RSPYPEELRNAGVEVVEFLKVNLG---R---VFRRRLDLRNHRKIVVIDGY- 230 (483)
T ss_pred CCCEEEEEE-ECCCCCCCC---------cHHHHHHHHHCCCEEEEecCCCcc---c---ccccccccccCceEEEEcCC-
Confidence 999999996 999986332 123677899999999877 32111 0 01235688999999999999
Q ss_pred CCCCCcccceEEEEcccccCC-CCCCCCCccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeChHHHHHHH
Q 004579 278 PNGDPERRRIMSFVGGIDLCD-GRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLF 356 (744)
Q Consensus 278 ~~~~~~~~~~vAfvGGinL~~-~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gpaa~dl~~ 356 (744)
+||+||+|+++ .+... .....+|||+|++++||+|.+++.
T Consensus 231 ----------ia~~Gg~Ni~d~~y~~~-----------------------------~~~~~~w~D~~~~i~Gp~v~~l~~ 271 (483)
T PRK01642 231 ----------IAYTGSMNVVDPEYFKQ-----------------------------DPGVGQWRDTHVRIEGPVVTALQL 271 (483)
T ss_pred ----------EEEeCCcccCCHHHhCC-----------------------------CCCCCCcEEEEEEEEcHHHHHHHH
Confidence 99999999999 54321 122468999999999999999999
Q ss_pred HHHHHHHHhcCCcccccccccCCCCCCCCCCCCCCCCCCceeeeeecccCCcccCCCCChHHHhhcccccCCCCcchhHH
Q 004579 357 NFEQRWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSI 436 (744)
Q Consensus 357 ~F~~rW~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~vQv~rS~~~~~~~~~p~~p~~~~~~~l~~~~~~~~e~sI 436 (744)
.|.++|+.++++........+ ..++ . ...+...+|++.|- +. ..+.++
T Consensus 272 ~F~~dW~~~~~~~~~~~~~~~---~~~~----~-~~~~~~~~qi~~sg-----------------------P~-~~~~~~ 319 (483)
T PRK01642 272 IFAEDWEWETGERILPPPPDV---LIMP----F-EEASGHTVQVIASG-----------------------PG-DPEETI 319 (483)
T ss_pred HHHHHHHHHhCcccCCCCccc---ccCC----c-cCCCCceEEEEeCC-----------------------CC-ChhhHH
Confidence 999999988765211110000 0000 0 11234568888762 22 235689
Q ss_pred HHHHHHHHHhcccEEEEeeccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEecCCCCCCCCCc
Q 004579 437 QDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESG 516 (744)
Q Consensus 437 ~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP~~p~g~~~~~ 516 (744)
+++|+++|.+||++|||++|||++. . .+..+|..|++|| |+|+|++|..+
T Consensus 320 ~~~~~~~I~~A~~~I~I~tpYfip~------~---------------~i~~aL~~Aa~rG--V~Vril~p~~~------- 369 (483)
T PRK01642 320 HQFLLTAIYSARERLWITTPYFVPD------E---------------DLLAALKTAALRG--VDVRIIIPSKN------- 369 (483)
T ss_pred HHHHHHHHHHhccEEEEEcCCcCCC------H---------------HHHHHHHHHHHcC--CEEEEEeCCCC-------
Confidence 9999999999999999999999953 2 3556777788899 99999999754
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHcCCCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcceeeEeee
Q 004579 517 SVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHA 596 (744)
Q Consensus 517 ~~~~i~~~~~rt~~~~~~~i~~~L~~~Gv~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHS 596 (744)
++.+++|+.++ +++.|.++|+++ ++|.+ .++||
T Consensus 370 -d~~~~~~~~~~-------~~~~L~~~Gv~I-------------------~~y~~--------------------~~~Ha 402 (483)
T PRK01642 370 -DSLLVFWASRA-------FFTELLEAGVKI-------------------YRYEG--------------------GLLHT 402 (483)
T ss_pred -CcHHHHHHHHH-------HHHHHHHcCCEE-------------------EEeCC--------------------CceEe
Confidence 23456666655 578899999976 34554 38999
Q ss_pred eEEEEeceEEEEcCccCCcccccCCCCcceEEEeecCCc
Q 004579 597 KMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYH 635 (744)
Q Consensus 597 K~mIVDD~~~iIGSANin~RS~~g~rDsEi~l~i~d~~~ 635 (744)
|+|||||++++|||+|||.||+..| .|+++.++|+..
T Consensus 403 K~~ivD~~~~~vGS~N~d~rS~~~N--~E~~~~i~d~~~ 439 (483)
T PRK01642 403 KSVLVDDELALVGTVNLDMRSFWLN--FEITLVIDDTGF 439 (483)
T ss_pred EEEEECCCEEEeeCCcCCHhHHhhh--hcceEEEECHHH
Confidence 9999999999999999999999866 999999998764
No 8
>PRK11263 cardiolipin synthase 2; Provisional
Probab=100.00 E-value=2.7e-49 Score=438.64 Aligned_cols=342 Identities=21% Similarity=0.263 Sum_probs=255.0
Q ss_pred ccccCCeeeEcccccCCCCCCCccccCCCcccChhhHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHH
Q 004579 110 PQRKGCKVSLYQDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIML 189 (744)
Q Consensus 110 ~~r~G~~v~l~~d~~~~~~~~p~~~~~~g~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l 189 (744)
+++.||+++++.|| +++|++++++|++||++|+|++|+|. ++. .+..|
T Consensus 3 ~~~~gN~v~ll~~G--------------------~e~~~~l~~~I~~Ak~~I~i~~yi~~-------~d~-----~g~~l 50 (411)
T PRK11263 3 SWREGNRIQLLENG--------------------EQYYPRVFEAIAAAQEEILLETFILF-------EDK-----VGKQL 50 (411)
T ss_pred cccCCCeEEEEeCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEEe-------cCc-----hHHHH
Confidence 57889999999985 46789999999999999999999874 233 58999
Q ss_pred HHHHHHhhhcCCeEEEEEeCCCccccccccccccCCCcHHHHHHhcCCCcEEEEcCCCCCCCCcceeeecccccccCcee
Q 004579 190 GELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQK 269 (744)
Q Consensus 190 ~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~g~~~~~~~~~~~~l~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqK 269 (744)
.++|++||+|||+||||+ |..|+..+ +....+.|+++||++..+.+.+. + .......+.++|+|
T Consensus 51 ~~aL~~aa~rGV~Vril~-D~~gs~~~----------~~~~~~~L~~aGv~v~~~~p~~~----~-~~~~~~~~~R~HrK 114 (411)
T PRK11263 51 HAALLAAAQRGVKVEVLV-DGYGSPDL----------SDEFVNELTAAGVRFRYFDPRPR----L-LGMRTNLFRRMHRK 114 (411)
T ss_pred HHHHHHHHHCCCEEEEEE-ECCCCCCC----------CHHHHHHHHHCCeEEEEeCCccc----c-cccccccccCCcce
Confidence 999999999999999997 99887532 23567889999999987754321 1 11122334699999
Q ss_pred EEEEcCCCCCCCCcccceEEEEcccccCCCCCCCCCccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeCh
Q 004579 270 IVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGP 349 (744)
Q Consensus 270 ivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gp 349 (744)
++|||++ +|||||+|+++.++.. .+..+|+|+|++|+||
T Consensus 115 iiVIDg~-----------~a~vGg~N~~~~~~~~------------------------------~g~~~w~D~~v~i~Gp 153 (411)
T PRK11263 115 IVVIDGR-----------IAFVGGINYSADHLSD------------------------------YGPEAKQDYAVEVEGP 153 (411)
T ss_pred EEEEcCC-----------EEEEcCeEchHhhccc------------------------------cCCCCceEEEEEEECH
Confidence 9999999 9999999999764310 1124699999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCCCCCCCceeeeeecccCCcccCCCCChHHHhhcccccCCC
Q 004579 350 IAWDVLFNFEQRWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKD 429 (744)
Q Consensus 350 aa~dl~~~F~~rW~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~vQv~rS~~~~~~~~~p~~p~~~~~~~l~~~~~ 429 (744)
+|.+++..|.+.|......... ..+. ..++ .+...+...+|++.+- +
T Consensus 154 ~V~~l~~~f~~~w~~~~~~~~~--~~~~---~~~~----~~~~~g~~~~~~v~~~------------------------p 200 (411)
T PRK11263 154 VVADIHQFELEALPGQSAARRW--WRRH---HRAE----ENRQPGEAQALLVWRD------------------------N 200 (411)
T ss_pred HHHHHHHHHHHHHhhcccchhh--hccc---ccCc----ccCCCCCeEEEEEECC------------------------C
Confidence 9999999999999754211000 0000 0000 0112334456766541 1
Q ss_pred CcchhHHHHHHHHHHHhcccEEEEeeccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEecCCC
Q 004579 430 NIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWP 509 (744)
Q Consensus 430 ~~~e~sI~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP~~p 509 (744)
......|+++|+.+|.+||+.|||+||||++. . .+..+|..|++|| |+|.||+|..|
T Consensus 201 ~~~~~~i~~~~~~~i~~A~~~I~I~tpYf~p~------~---------------~l~~aL~~Aa~RG--V~V~ii~~~~~ 257 (411)
T PRK11263 201 EEHRDDIERHYLKALRQARREVIIANAYFFPG------Y---------------RLLRALRNAARRG--VRVRLILQGEP 257 (411)
T ss_pred cchHHHHHHHHHHHHHHhceEEEEEecCcCCC------H---------------HHHHHHHHHHHCC--CEEEEEeCCCC
Confidence 12356899999999999999999999999953 2 3566777888899 99999999643
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhHHHHHHHHHHcCCCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcc
Q 004579 510 EGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARR 589 (744)
Q Consensus 510 ~g~~~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~Gv~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~ 589 (744)
++.++.++.+. +++.|+++|+++ ++|.+
T Consensus 258 --------d~~~~~~a~~~-------~~~~Ll~~Gv~I-------------------~~y~~------------------ 285 (411)
T PRK11263 258 --------DMPIVRVGARL-------LYNYLLKGGVQI-------------------YEYCR------------------ 285 (411)
T ss_pred --------CcHHHHHHHHH-------HHHHHHHCCCEE-------------------EEecC------------------
Confidence 34566666554 678999999976 35544
Q ss_pred eeeEeeeeEEEEeceEEEEcCccCCcccccCCCCcceEEEeecCCcccCCCCccchHHHHHHHHHHHhcC
Q 004579 590 FMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLG 659 (744)
Q Consensus 590 ~~iyvHSK~mIVDD~~~iIGSANin~RS~~g~rDsEi~l~i~d~~~~~~~~~~~~~~~~lR~~Lw~ehlG 659 (744)
.++|||+|||||++++|||+|||.|||..| +|+++.++|+.... ++.+...++++||.-
T Consensus 286 --~~lHaK~~viD~~~~~vGS~Nld~rS~~lN--~E~~~~i~d~~~a~-------~l~~~~~~~~~~~s~ 344 (411)
T PRK11263 286 --RPLHGKVALMDDHWATVGSSNLDPLSLSLN--LEANLIIRDRAFNQ-------TLRDNLNGLIAADCQ 344 (411)
T ss_pred --CCceeEEEEECCCEEEEeCCcCCHHHhhhh--hhcCEEEeCHHHHH-------HHHHHHHHHHHhhCE
Confidence 389999999999999999999999999766 99999999886532 245555666666643
No 9
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=100.00 E-value=2.1e-37 Score=349.59 Aligned_cols=336 Identities=25% Similarity=0.343 Sum_probs=241.0
Q ss_pred ccCCeeeEcccccCCCCCCCccccCCCcccChhhHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHH
Q 004579 112 RKGCKVSLYQDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGE 191 (744)
Q Consensus 112 r~G~~v~l~~d~~~~~~~~p~~~~~~g~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~ 191 (744)
..++.++++.++ .+.|.+++++|++|+++|+++.|++ .++. .+..+.+
T Consensus 57 ~~~~~~~~l~~~--------------------~~~~~~~~~~i~~a~~~I~~~~~i~-------~~d~-----~~~~i~~ 104 (438)
T COG1502 57 ISGNGVDLLKDG--------------------ADAFAALIELIEAAKKSIYLQYYIW-------QDDE-----LGREILD 104 (438)
T ss_pred CCCCceEEecCH--------------------HHHHHHHHHHHHHHhhEEEEEEEEE-------eCCh-----hHHHHHH
Confidence 467777777763 4678999999999999999988765 3343 5899999
Q ss_pred HHHHhhhcCCeEEEEEeCCCccccccccccccCCCcHHHHHHhcCCCc-EEEEcCCCCCCCCcceeeecccccccCceeE
Q 004579 192 LLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDV-HCILCPRNPDDGGSFIQDIQISAMFTHHQKI 270 (744)
Q Consensus 192 lL~~aA~rGV~VriLvwD~~~s~~~~~~~g~~~~~~~~~~~~l~~~gV-~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKi 270 (744)
+|.++|++||+||+|+ |+.++.... .......+++.++ ++..+.+... .. ......+.++|+|+
T Consensus 105 ~l~~~a~~gv~vr~l~-D~~~~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~-~~----~~~~~~~~r~H~K~ 169 (438)
T COG1502 105 ALIEAAKRGVEVRLLL-DDIGSTRGL---------LKSLLALLKRAGIEEVRLFNPASP-RP----LRFRRLNRRLHRKI 169 (438)
T ss_pred HHHHHHHcCCEEEEEE-ecCCCcccc---------cHHHHHHHhcCCceEEEecCCccc-cc----chhhhhhccccceE
Confidence 9999999999999998 999873221 1356778889999 6665543311 00 11345688999999
Q ss_pred EEEcCCCCCCCCcccceEEEEcccccCCCCCCCCCccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeChH
Q 004579 271 VVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPI 350 (744)
Q Consensus 271 vVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gpa 350 (744)
+|||+. ++|+||.|+.+.++... ....+|+|+++++.||+
T Consensus 170 ~viD~~-----------i~~vGg~N~~d~y~~~~-----------------------------~~~~~~~D~~~~~~g~~ 209 (438)
T COG1502 170 VVIDGK-----------VAFVGGANIGDEYFHKD-----------------------------KGLGYWRDLHVRITGPA 209 (438)
T ss_pred EEEcCC-----------EEEecCcccchhhhccC-----------------------------cCcccceeeeEEEECHH
Confidence 999999 99999999999865321 02348999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcccccccccCCCCCCCCC-CCCCCCCCCceeeeeecccCCcccCCCCChHHHhhcccccCCC
Q 004579 351 AWDVLFNFEQRWRKQGGKDVLVHLRELGDIIIPPSP-VMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKD 429 (744)
Q Consensus 351 a~dl~~~F~~rW~~~~~~~~l~~~~~~~~~~~p~~~-~~~~~~~~~~~vQv~rS~~~~~~~~~p~~p~~~~~~~l~~~~~ 429 (744)
|.++..+|.++|+........... . ..+..+ ...........+|++.+.+... . +.
T Consensus 210 v~~l~~~f~~~w~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~P~~~--------~---------~~- 266 (438)
T COG1502 210 VADLARLFIQDWNLESGSSKPLLA--L---VRPPLQSLSLLPVGRGSTVQVLSSGPDKG--------L---------GS- 266 (438)
T ss_pred HHHHHHHHHHHhhhccCcCccccc--c---cccccccccccccccCcceEEEecCCccc--------c---------ch-
Confidence 999999999999987432110000 0 000000 0001112223367777643210 0 00
Q ss_pred CcchhHHHHHHHHHHHhcccEEEEeeccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEecCCC
Q 004579 430 NIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWP 509 (744)
Q Consensus 430 ~~~e~sI~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP~~p 509 (744)
....+...|+.+|.+|+++|+|++|||++. . ++..++..+.++| |+|.|++|..
T Consensus 267 --~~~~~~~~~~~~i~~A~~~i~i~~pYf~~~------~---------------~~~~al~~a~~~G--v~V~ii~~~~- 320 (438)
T COG1502 267 --ELIELNRLLLKAINSARESILIATPYFVPD------R---------------ELLAALKAAARRG--VDVRIIIPSL- 320 (438)
T ss_pred --hhhhHHHHHHHHHHhhceEEEEEcCCcCCC------H---------------HHHHHHHHHHhcC--CEEEEEeCCC-
Confidence 011245899999999999999999999963 2 4567788888899 8999999953
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhHHHHHHHHHHcCCCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcc
Q 004579 510 EGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARR 589 (744)
Q Consensus 510 ~g~~~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~Gv~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~ 589 (744)
......+++|+.+. ++..|.+.|+++ ++|.+ +
T Consensus 321 -----~~~d~~~~~~~~~~-------~~~~l~~~gv~i-------------------~~~~~------g----------- 352 (438)
T COG1502 321 -----GANDSAIVHAAYRA-------YLKELLEAGVKV-------------------YEYPG------G----------- 352 (438)
T ss_pred -----CCCChHHHHHHHHH-------HHHHHHHhCCEE-------------------EEecC------C-----------
Confidence 12334455554443 688899999875 34433 0
Q ss_pred eeeEeeeeEEEEeceEEEEcCccCCcccccCCCCcceEEEeecCCc
Q 004579 590 FMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYH 635 (744)
Q Consensus 590 ~~iyvHSK~mIVDD~~~iIGSANin~RS~~g~rDsEi~l~i~d~~~ 635 (744)
.++|+|+|||||++++|||+|||.||+.+| +|+++.++++..
T Consensus 353 --~~lH~K~~iiD~~~~~vGS~N~~~rS~~lN--~E~~~~i~d~~~ 394 (438)
T COG1502 353 --AFLHSKVMIIDDRTVLVGSANLDPRSLRLN--FEVGLVIEDPEL 394 (438)
T ss_pred --CcceeeEEEEcCCEEEEeCCcCCHhHHHHh--hhheeEEeCHHH
Confidence 389999999999999999999999999876 999999998843
No 10
>PHA02820 phospholipase-D-like protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=339.06 Aligned_cols=326 Identities=15% Similarity=0.159 Sum_probs=214.5
Q ss_pred hHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccC
Q 004579 145 RCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMA 224 (744)
Q Consensus 145 ~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~g~~~ 224 (744)
..++.+.++|.+||++|+|+++.|.| ++.. ....|.+|.++|++||+|||+||||+ |..+..
T Consensus 26 ~t~~~~~~lI~~Ak~~I~I~s~yf~~------~d~~-~~~~G~~i~~aL~~aA~rGV~VRIL~-d~~~~~---------- 87 (424)
T PHA02820 26 STFNFWREILSNTTKTLDISSFYWSL------SDEV-GTNFGTMILNEIIQLPKRGVRVRIAV-NKSNKP---------- 87 (424)
T ss_pred CHHHHHHHHHHhhCcEEEEEeEEEec------Cccc-cchhHHHHHHHHHHHHHCCCEEEEEE-CCCCCc----------
Confidence 46789999999999999999987653 1110 00137899999999999999999997 864311
Q ss_pred CCcHHHHHHhcCCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCCC
Q 004579 225 THDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTP 304 (744)
Q Consensus 225 ~~~~~~~~~l~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt~ 304 (744)
....+.|+++||++..+++.. ....++|+|++|||++ ++|+||+|+.. |+-+
T Consensus 88 ---~~~~~~L~~aGv~v~~~~~~~------------~~~~~~HrK~~VIDg~-----------~~~iGS~Nid~-rsl~- 139 (424)
T PHA02820 88 ---LKDVELLQMAGVEVRYIDITN------------ILGGVLHTKFWISDNT-----------HIYLGSANMDW-RSLT- 139 (424)
T ss_pred ---hhhHHHHHhCCCEEEEEecCC------------CCcccceeeEEEECCC-----------EEEEeCCcCCh-hhhh-
Confidence 133567888999998775321 1246799999999999 99999999965 4411
Q ss_pred CccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeee--eChHHHHHHHHHHHHHHHhcCCcccccccccCCCCC
Q 004579 305 FHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRL--EGPIAWDVLFNFEQRWRKQGGKDVLVHLRELGDIII 382 (744)
Q Consensus 305 ~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i--~Gpaa~dl~~~F~~rW~~~~~~~~l~~~~~~~~~~~ 382 (744)
..+|+++++ +||+|.+++..|.++|+..++.........++....
T Consensus 140 ---------------------------------~n~E~gv~i~~~g~~v~~L~~~F~~dW~~~~~~~~~~~~~~~~~~~~ 186 (424)
T PHA02820 140 ---------------------------------QVKELGIAIFNNSNLAADLTQIFEVYWYLGVNNLPYNWKNFYPLYYN 186 (424)
T ss_pred ---------------------------------hCCceEEEEecchHHHHHHHHHHHHHHHhhccCCCCccccccccccc
Confidence 124677777 799999999999999998753211000000000000
Q ss_pred CCCCCCCCCCCCCceeeeeecccCCcccCCCCChHHHhhcccccCCCCcchhHHHHHHHHHHHhcccEEEEeeccccccc
Q 004579 383 PPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSS 462 (744)
Q Consensus 383 p~~~~~~~~~~~~~~vQv~rS~~~~~~~~~p~~p~~~~~~~l~~~~~~~~e~sI~~ay~~aI~~A~~~IyIenqYFi~~~ 462 (744)
+..|.... ..+....|++.+.+. .. .+. ......++|+.+|.+||++|||+++||+|..
T Consensus 187 ~~~p~~~~-~~~~~~~~~~sssP~-----------~~------~~~---~r~~~~~~~l~~I~~Ak~~I~I~tpyfvP~~ 245 (424)
T PHA02820 187 TDHPLSLN-VSGVPHSVFIASAPQ-----------QL------CTM---ERTNDLTALLSCIRNASKFVYVSVMNFIPII 245 (424)
T ss_pred cCCCcccc-cCCccceEEEeCCCh-----------hh------cCC---CCCchHHHHHHHHHHHhhEEEEEEcccccee
Confidence 00010001 111112334333211 00 000 0123579999999999999999999999873
Q ss_pred c-------ccccCCCCcchhhhcccchHHHHHHHHH-HHHhCCceEEEEEecCCCCCCCCCchhHHHHHHHHhhhhhhHH
Q 004579 463 F-------AWSADGIKPEEINALHLIPKELSLKIVS-KIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYK 534 (744)
Q Consensus 463 ~-------~~~~~~~~~~~~~~~n~i~~~la~~ia~-a~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~rt~~~~~~ 534 (744)
+ .|| .+-.+|.+ |++|| |+|+|++|.|++. ..+ .|+.+
T Consensus 246 ~~~~~~~~yw~-----------------~i~~AL~~AA~~RG--V~VriLvp~~~d~----~~~----~~a~~------- 291 (424)
T PHA02820 246 YSKAGKILFWP-----------------YIEDELRRAAIDRK--VSVKLLISCWQRS----SFI----MRNFL------- 291 (424)
T ss_pred eccCCcccchH-----------------HHHHHHHHHHHhCC--CEEEEEEeccCCC----Ccc----HHHHH-------
Confidence 2 122 34456653 56789 9999999987642 211 22222
Q ss_pred HHHHHHHHcCCCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcceeeEeeeeEEEEeceEEEEcCccCC
Q 004579 535 DVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANIN 614 (744)
Q Consensus 535 ~i~~~L~~~Gv~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK~mIVDD~~~iIGSANin 614 (744)
..++.|.++|+++ ++++|-... +.+. .| +..++|||+||||| ++.|||||||
T Consensus 292 ~~l~~L~~~gv~I----~Vk~y~~p~--------~~~~-~~--------------~~~f~HaK~~vvD~-~a~IGTsN~D 343 (424)
T PHA02820 292 RSIAMLKSKNINI----EVKLFIVPD--------ADPP-IP--------------YSRVNHAKYMVTDK-TAYIGTSNWT 343 (424)
T ss_pred HHHHHHhccCceE----EEEEEEcCc--------cccc-CC--------------cceeeeeeEEEEcc-cEEEECCcCC
Confidence 2467888899987 566652210 1110 01 12599999999997 6999999999
Q ss_pred cccccCCCCcceEEEeecCC
Q 004579 615 QRSMEGARDTEIAMGGYQPY 634 (744)
Q Consensus 615 ~RS~~g~rDsEi~l~i~d~~ 634 (744)
.|||..| .|+++.++++.
T Consensus 344 ~rsf~~n--~ev~~~i~~~~ 361 (424)
T PHA02820 344 GNYFTDT--CGVSINITPDD 361 (424)
T ss_pred HHHHhcc--CcEEEEEecCC
Confidence 9999987 99999998863
No 11
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=100.00 E-value=1.2e-35 Score=331.92 Aligned_cols=340 Identities=16% Similarity=0.121 Sum_probs=221.9
Q ss_pred cCCeeeEcccccCCCCCCCccccCCCcccChhhHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHH
Q 004579 113 KGCKVSLYQDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGEL 192 (744)
Q Consensus 113 ~G~~v~l~~d~~~~~~~~p~~~~~~g~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~l 192 (744)
.+++++++.++ .++|++|+++|++|+++|+|++|++. +|+ .|..|.++
T Consensus 23 ~~~~v~~l~~~--------------------~~f~~~Ll~~I~~Ak~~I~l~~y~~~-------~D~-----~g~~il~A 70 (451)
T PRK09428 23 SPDDVETLYSP--------------------ADFRETLLEKIASAKKRIYIVALYLE-------DDE-----AGREILDA 70 (451)
T ss_pred CcccEEEEcCH--------------------HHHHHHHHHHHHhcCCeEEEEEEEec-------CCc-----hHHHHHHH
Confidence 56788888773 46889999999999999999998763 343 58999999
Q ss_pred HHHhhh--cCCeEEEEEeCCCcccc-ccccccccC-CCcHHHHHHhcCC--CcEEEEcCCCCCCCCcceeeecccccccC
Q 004579 193 LKKKAS--EGVRVCMLVWDDRTSVS-LLKKDGLMA-THDEETEKFFQGT--DVHCILCPRNPDDGGSFIQDIQISAMFTH 266 (744)
Q Consensus 193 L~~aA~--rGV~VriLvwD~~~s~~-~~~~~g~~~-~~~~~~~~~l~~~--gV~~~~~~~~~~~~~~~~~~~~~~~~~~h 266 (744)
|.+|++ +||+|+||+ |...+.. .+.. .. ..+..+.+.|+++ ||++.++.. |.. ....+.++
T Consensus 71 L~~a~~~~~gv~VrvLv-D~~Ra~Rg~iG~---~~~~~~~~~~~~l~~~~~gv~v~~f~~-p~~--------~~e~~gr~ 137 (451)
T PRK09428 71 LYQAKQQNPELDIKVLV-DWHRAQRGLIGA---AASNTNADWYCEMAQEYPGVDIPVYGV-PVN--------TREALGVL 137 (451)
T ss_pred HHHHHhcCCCcEEEEEE-Eccccccccccc---CCCCcCHHHHHHHHHhCCCceEEEcCC-ccc--------cchhhhhc
Confidence 999854 899999998 9852221 1110 10 1124566667654 699887732 210 12356789
Q ss_pred ceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCCCCccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeee
Q 004579 267 HQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRL 346 (744)
Q Consensus 267 HqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i 346 (744)
|+|++|||++ |+|+| .||.+.++.. ...+ ..|.+++|
T Consensus 138 HrKi~IiD~~-----------v~ysG-aNi~d~Yl~~-----------------------------~~~~--r~Dry~~i 174 (451)
T PRK09428 138 HLKGFIIDDT-----------VLYSG-ASLNNVYLHQ-----------------------------HDKY--RYDRYHLI 174 (451)
T ss_pred eeeEEEECCC-----------EEEec-ccccHHHhcC-----------------------------Cccc--CcceEEEE
Confidence 9999999999 99997 7999975421 0011 12668889
Q ss_pred eChHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCCC-----------------CCCCCCCCCCceeeeeecccCCcc
Q 004579 347 EGPIAWDVLFNFEQRWRKQGGKDVLVHLRELGDIIIPPS-----------------PVMYPDDHDTWNVQLFRSIDGGAA 409 (744)
Q Consensus 347 ~Gpaa~dl~~~F~~rW~~~~~~~~l~~~~~~~~~~~p~~-----------------~~~~~~~~~~~~vQv~rS~~~~~~ 409 (744)
+||++.++...|.++|..+++........ ..|.. ....+...+.-.+++.+.+
T Consensus 175 ~g~~la~~~~~fi~~~~~~~~~v~~l~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~p~~----- 244 (451)
T PRK09428 175 RNAELADSMVNFIQQNLLNSPAVNRLDQP-----NRPKTKEIKNDIRQFRQRLRDAAYQFQGQANNDELSVTPLV----- 244 (451)
T ss_pred eCchHHHHHHHHHHHHhhccCcccccccc-----ccccchhhHHHHHHHHHHHhhhccCcccccCCCCeEEeeee-----
Confidence 99999999999999998765421000000 00000 0000000011112222211
Q ss_pred cCCCCChHHHhhcccccCCCCcchhHHHHHHHHHHHhcccEEEEeeccccccccccccCCCCcchhhhcccchHHHHHHH
Q 004579 410 FGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKI 489 (744)
Q Consensus 410 ~~~p~~p~~~~~~~l~~~~~~~~e~sI~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~i 489 (744)
|.+ ....+.+.+..+|.+|++.|+|.||||+++ ..+..+|
T Consensus 245 -----------------g~g--~~~~l~~~~~~li~~A~~~i~I~TPYF~p~---------------------~~l~~~L 284 (451)
T PRK09428 245 -----------------GLG--KKNLLNKTIFHLMASAEQKLTICTPYFNLP---------------------AILVRNI 284 (451)
T ss_pred -----------------ccC--CchHHHHHHHHHHhccCcEEEEEeCCcCCC---------------------HHHHHHH
Confidence 111 125778999999999999999999999963 1356677
Q ss_pred HHHHHhCCceEEEEEecCCCCCCCCCchhHHHHHHHHhhhhhhHHH----H---HHHHHHcC---CCCCCCCceEEeecC
Q 004579 490 VSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKD----V---VQALRAKG---IMEDPRNYLTFFCLG 559 (744)
Q Consensus 490 a~a~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~rt~~~~~~~----i---~~~L~~~G---v~~~p~~yl~~~~l~ 559 (744)
..|+++| ++|.||+|.....+--.++.+.++.+..+.+ +|.. + .+.|.++| +++
T Consensus 285 ~~a~~rG--v~V~Ii~~~~~andfy~~~d~~~~~~~~~py--~ye~~lr~f~~~~~~li~~G~l~v~i------------ 348 (451)
T PRK09428 285 IRLLRRG--KKVEIIVGDKTANDFYIPPDEPFKIIGALPY--LYEINLRRFAKRLQYYIDNGQLNVRL------------ 348 (451)
T ss_pred HHHHhcC--CcEEEEcCCcccccCcCCCccHHHHhhhhHH--HHHHhhhhhHHHhhhhhhcCcceEEE------------
Confidence 7888899 8899999974211111113344555544331 1211 1 22445555 432
Q ss_pred CcccccCCccCCCCCCCCchhHHHHHhhcceeeEeeeeEEEEeceEEEEcCccCCcccccCCCCcceEEEeecCCc
Q 004579 560 NREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYH 635 (744)
Q Consensus 560 ~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK~mIVDD~~~iIGSANin~RS~~g~rDsEi~l~i~d~~~ 635 (744)
++|.+ ..+|||+|+|||+|++|||+|+|.||+. .|+|+++.++|+..
T Consensus 349 -------~~~~~--------------------~~~HaK~i~vD~~~~~iGS~Nld~RS~~--ln~E~~l~i~d~~~ 395 (451)
T PRK09428 349 -------WKDGD--------------------NSYHLKGIWVDDRWMLLTGNNLNPRAWR--LDLENALLIHDPKQ 395 (451)
T ss_pred -------EecCC--------------------CcceEEEEEEeCCEEEEcCCCCChhHhh--hcccceEEEECChH
Confidence 34433 3799999999999999999999999996 55999999999863
No 12
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=100.00 E-value=1.4e-34 Score=318.46 Aligned_cols=316 Identities=20% Similarity=0.258 Sum_probs=206.0
Q ss_pred hHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccC
Q 004579 145 RCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMA 224 (744)
Q Consensus 145 ~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~g~~~ 224 (744)
..|++++++|++||++|+|+.|++. ++++. .|.+|.++|++||+|||+||||+ |..++.
T Consensus 31 ~~~~~l~~~I~~Ak~~I~i~~yi~~-----~~~d~-----~g~~i~~aL~~aa~rGV~Vril~-D~~~~~---------- 89 (369)
T PHA03003 31 STYECFDEIISQAKKYIYIASFCCN-----LRSTP-----EGRLILDKLKEAAESGVKVTILV-DEQSGD---------- 89 (369)
T ss_pred CHHHHHHHHHHhhhhEEEEEEEEec-----ccCCc-----hHHHHHHHHHHhccCCCeEEEEe-cCCCCC----------
Confidence 5789999999999999999999732 13343 58999999999999999999997 976431
Q ss_pred CCcHHHHHHhcCCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCCC
Q 004579 225 THDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTP 304 (744)
Q Consensus 225 ~~~~~~~~~l~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt~ 304 (744)
...+.|+++||++..++... .+..+.+|.|++|||++ +||+||+||+++++. .
T Consensus 90 ----~~~~~L~~~Gv~v~~~~~~~-----------~~~~~~~~~k~~IiDg~-----------~~y~Gg~Ni~~~~~~-~ 142 (369)
T PHA03003 90 ----KDEEELQSSNINYIKVDIGK-----------LNNVGVLLGSFWVSDDR-----------RCYIGNASLTGGSIS-T 142 (369)
T ss_pred ----ccHHHHHHcCCEEEEEeccc-----------cCCCCceeeeEEEEcCc-----------EEEEecCccCCcccC-c
Confidence 34578889999987654211 00012458899999999 999999999996432 1
Q ss_pred CccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeChHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCC
Q 004579 305 FHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDVLVHLRELGDIIIPP 384 (744)
Q Consensus 305 ~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~~~~~l~~~~~~~~~~~p~ 384 (744)
. ...+.|+|. ||+|.+++..|.+.|+.++++....... ..+ ..|.
T Consensus 143 ~----------------------------~~~g~~~d~-----g~~v~~l~~~F~~~w~~~~~~~~~~~~~-~~~-~~~~ 187 (369)
T PHA03003 143 I----------------------------KTLGVYSTY-----PPLATDLRRRFDTFKAFNKNKSVFNRLC-CAC-CLPV 187 (369)
T ss_pred c----------------------------ccceeEecC-----cHHHHHHHHHHHHHHHhcCCCCcccccc-ccc-CCcc
Confidence 1 113579993 9999999999999999876542210000 000 0010
Q ss_pred CCCCCCCCCCCceeeeeecccCCcccCCCCChHHHhhcccccCCCCcchhHHHHHHHHHHHhcccEEEEeeccccccccc
Q 004579 385 SPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFA 464 (744)
Q Consensus 385 ~~~~~~~~~~~~~vQv~rS~~~~~~~~~p~~p~~~~~~~l~~~~~~~~e~sI~~ay~~aI~~A~~~IyIenqYFi~~~~~ 464 (744)
........+ ...+++.|. |.... .. ....++++|+++|.+||++|+|+++||+|....
T Consensus 188 ~~~~~~~~~--~~~~~~~s~-----------P~~~~------~~---~~~~~~~~ll~~I~~Ak~~I~I~t~yf~P~~~~ 245 (369)
T PHA03003 188 STKYHINNP--IGGVFFSDS-----------PEHLL------GY---SRTLDADVVLHKIKSAKKSIDLELLSLVPVIRE 245 (369)
T ss_pred cccccccCC--CcceEEecC-----------ChHHc------CC---CCCcCHHHHHHHHHHHhhEEEEEEeccccEEee
Confidence 000000000 111222221 11100 00 122578999999999999999999999864211
Q ss_pred cccCCCCcchhhhcccchHHHHHHHHHHH-HhCCceEEEEEecCCCCCCCCCchhHHHHHHHHhhhhhhHHHHHHHHHHc
Q 004579 465 WSADGIKPEEINALHLIPKELSLKIVSKI-EAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAK 543 (744)
Q Consensus 465 ~~~~~~~~~~~~~~n~i~~~la~~ia~a~-~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~ 543 (744)
++ . -.....+..+|.+|+ +|| |+|+|++|.+... + .. .+ .+++.|+++
T Consensus 246 --d~-----~----~~~~~~i~~AL~~AAa~RG--V~VRILv~~~~~~--~-~~--------~~-------~~~~~L~~~ 294 (369)
T PHA03003 246 --DD-----K----TTYWPDIYNALIRAAINRG--VKVRLLVGSWKKN--D-VY--------SM-------ASVKSLQAL 294 (369)
T ss_pred --CC-----C----CccHHHHHHHHHHHHHcCC--CEEEEEEecCCcC--C-ch--------hh-------hHHHHHHHc
Confidence 10 0 001235667777764 899 9999999975211 1 00 01 256789999
Q ss_pred CCCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcceeeEeeeeEEEEeceEEEEcCccCCcccccCCCC
Q 004579 544 GIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARD 623 (744)
Q Consensus 544 Gv~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK~mIVDD~~~iIGSANin~RS~~g~rD 623 (744)
|+... -.+++| +| ..|+|+|||||++++|||+||+.||+..+
T Consensus 295 G~~~~--i~vri~-----------~~-----------------------~~H~K~~VVD~~~a~iGS~N~d~~s~~~~-- 336 (369)
T PHA03003 295 CVGND--LSVKVF-----------RI-----------------------PNNTKLLIVDDEFAHITSANFDGTHYLHH-- 336 (369)
T ss_pred CCCCC--ceEeee-----------cC-----------------------CCCceEEEEcCCEEEEeccccCchhhccC--
Confidence 96420 001111 11 27999999999999999999999999765
Q ss_pred cceEEEeecCC
Q 004579 624 TEIAMGGYQPY 634 (744)
Q Consensus 624 sEi~l~i~d~~ 634 (744)
.|+++.++++.
T Consensus 337 ~e~~~~~~~~~ 347 (369)
T PHA03003 337 AFVSFNTIDKE 347 (369)
T ss_pred CCeEEecCChh
Confidence 99888766553
No 13
>PF12357 PLD_C: Phospholipase D C terminal ; InterPro: IPR024632 Phospholipase D (PLD) catalyses the hydrolysis of the phosphodiester bond of glycerophospholipids to generate phosphatidic acid and a free head group. Phospholipase D activities have been detected in simple to complex organisms from viruses and bacteria to yeast, plants, and mammals []. In higher organisms, PLD specifically catalyzes the hydrolysis of phosphatidylcholine (PC) to phosphatidic acid (PA) and choline and is activated in response to stimulators of vesicle transport, endocytosis, exocytosis, cell migration, and mitosis. This entry represents the C-terminal domain of eukaryotic phospholipase D. The domain is approximately 70 amino acids in length and contains a conserved FPD sequence motif.
Probab=99.93 E-value=9.5e-27 Score=191.26 Aligned_cols=73 Identities=60% Similarity=1.133 Sum_probs=71.3
Q ss_pred ccccCCCCcHHHHHHHHHHHHHhHhhhcccccCCCCCcceecCccccCCCCCcccCCCCCCCCCCCCceecccC
Q 004579 662 DDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGTKS 735 (744)
Q Consensus 662 ~~~~~~p~s~~~~~~~~~~a~~n~~~~~~~~~~~~~~g~L~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (744)
++.|.+|+|+||+++||++|++||++|+++++ ++|+|||++||+.|++||+|++|||+|+||||+|||||++|
T Consensus 2 e~~F~~PesleCVr~Vn~iae~nW~~y~~ee~-~dl~GHLl~YPv~V~~dG~V~~LpG~e~FPDt~~~VlG~~S 74 (74)
T PF12357_consen 2 EECFLEPESLECVRRVNEIAEENWKQYASEEV-TDLPGHLLKYPVQVDRDGKVTPLPGCEFFPDTGGKVLGSKS 74 (74)
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHhhcccc-ccCCCccccCCeEEcCCCCEeeCCCCCcCCCCCCcccCCCC
Confidence 67899999999999999999999999999998 99999999999999999999999999999999999999986
No 14
>PRK05443 polyphosphate kinase; Provisional
Probab=99.80 E-value=3.1e-18 Score=199.89 Aligned_cols=270 Identities=16% Similarity=0.145 Sum_probs=188.2
Q ss_pred hhHHHHHHHHHHhccc-----EEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCccccccc
Q 004579 144 HRCWEDIFDAITNARH-----MIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLK 218 (744)
Q Consensus 144 ~~~~~~l~~aI~~Ak~-----~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~ 218 (744)
-+.|+.+++.|++|.+ +|.++-|.+. ...++.++|+.||++||+|+||+ +... .+-
T Consensus 347 Y~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~---------------~~s~iv~aL~~Aa~~Gk~V~vlv-e~ka--rfd- 407 (691)
T PRK05443 347 YESFDPVVEFLRQAAADPDVLAIKQTLYRTS---------------KDSPIVDALIEAAENGKQVTVLV-ELKA--RFD- 407 (691)
T ss_pred ccCchHHHHHHHHhccCCCeeEEEEEEEEec---------------CCHHHHHHHHHHHHcCCEEEEEE-ccCc--ccc-
Confidence 4578889999999998 8999988653 25799999999999999999999 6542 111
Q ss_pred cccccCCCcHHHHHHhcCCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCC
Q 004579 219 KDGLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCD 298 (744)
Q Consensus 219 ~~g~~~~~~~~~~~~l~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~ 298 (744)
...+..+.+.|+++||+++.-. ..+..|.|+++||++..+ +-+-.+++|+.|+..
T Consensus 408 -----e~~n~~~~~~L~~aGv~V~y~~----------------~~~k~HaK~~lid~~e~~----~~~~~~~iGTgN~n~ 462 (691)
T PRK05443 408 -----EEANIRWARRLEEAGVHVVYGV----------------VGLKTHAKLALVVRREGG----GLRRYVHLGTGNYNP 462 (691)
T ss_pred -----HHHHHHHHHHHHHcCCEEEEcc----------------CCccceeEEEEEEeecCC----ceeEEEEEcCCCCCc
Confidence 1112356788999999986421 135799999999997222 333489999999876
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeee-ChHHHHHHHHHHHHHHHhcCCccccccccc
Q 004579 299 GRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLE-GPIAWDVLFNFEQRWRKQGGKDVLVHLREL 377 (744)
Q Consensus 299 ~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~-Gpaa~dl~~~F~~rW~~~~~~~~l~~~~~~ 377 (744)
... ..|.|+.+.+. +..+.|+...|...|....... +
T Consensus 463 ~s~-----------------------------------~~y~D~~l~t~d~~i~~d~~~~F~~l~~~~~~~~-------~ 500 (691)
T PRK05443 463 KTA-----------------------------------RLYTDLSLLTADPEIGEDVTRLFNYLTGYSRPVK-------L 500 (691)
T ss_pred chh-----------------------------------hhccceeEEEeChHHHHHHHHHHHHHhCcCcccc-------c
Confidence 411 35789999855 5689999999999865321100 0
Q ss_pred CCCCCCCCCCCCCCCCCCceeeeeecccCCcccCCCCChHHHhhcccccCCCCcchhHHHHHHHHHHHhccc----EEEE
Q 004579 378 GDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKN----FIYI 453 (744)
Q Consensus 378 ~~~~~p~~~~~~~~~~~~~~vQv~rS~~~~~~~~~p~~p~~~~~~~l~~~~~~~~e~sI~~ay~~aI~~A~~----~IyI 453 (744)
. .++-| | ......+.+.+...|.+||+ +|+|
T Consensus 501 ~--------------------~l~~s------------------------P-~~~~~~l~~~i~~ei~~Ak~G~~a~I~i 535 (691)
T PRK05443 501 R--------------------KLLVS------------------------P-FTLRERLLELIDREIANARAGKPARIIA 535 (691)
T ss_pred c--------------------EEeec------------------------C-ccHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 0 01100 0 11256788999999999999 9999
Q ss_pred eeccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEe-------cCCCCCCCCCchhHHHHHHHH
Q 004579 454 ENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVV-------PMWPEGFPESGSVQAILDWQR 526 (744)
Q Consensus 454 enqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~Ivl-------P~~p~g~~~~~~~~~i~~~~~ 526 (744)
.++||. |. .+..+|..|.++| |+|.+++ |..|+ .++...+
T Consensus 536 k~n~l~-------d~---------------~ii~aL~~As~~G--V~V~liVRGiC~l~pgipg-~sd~i~v-------- 582 (691)
T PRK05443 536 KMNSLV-------DP---------------QIIDALYEASQAG--VKIDLIVRGICCLRPGVPG-LSENIRV-------- 582 (691)
T ss_pred EcCCCC-------CH---------------HHHHHHHHHHHCC--CeEEEEEecccccCCCCCC-CCCCEEE--------
Confidence 999964 22 4567788888899 7777777 33331 2222211
Q ss_pred hhhhhhHHHHHHHHHHcCCCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcceeeEeeeeEEEEeceEE
Q 004579 527 RTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYI 606 (744)
Q Consensus 527 rt~~~~~~~i~~~L~~~Gv~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK~mIVDD~~~ 606 (744)
.+++..+++ ++++ +.|.+ . ||.++
T Consensus 583 -------~s~v~r~Le-h~rI-------------------y~f~~--------------------g---------d~~~~ 606 (691)
T PRK05443 583 -------RSIVGRFLE-HSRI-------------------YYFGN--------------------G---------GDEEV 606 (691)
T ss_pred -------HHHHHHHHh-cCEE-------------------EEEeC--------------------C---------CCcEE
Confidence 125566665 3444 12322 1 88999
Q ss_pred EEcCccCCcccccCCCCcceEEEeecCCc
Q 004579 607 IIGSANINQRSMEGARDTEIAMGGYQPYH 635 (744)
Q Consensus 607 iIGSANin~RS~~g~rDsEi~l~i~d~~~ 635 (744)
.||||||+.|||..| .|+++.++|+..
T Consensus 607 ~iGSAn~d~Rsl~~r--~Ev~~~i~d~~~ 633 (691)
T PRK05443 607 YISSADWMPRNLDRR--VEVLFPILDPRL 633 (691)
T ss_pred EEECCCCCcccccce--EEEeEEEeCHHH
Confidence 999999999999755 999999999863
No 15
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=99.79 E-value=5.1e-18 Score=197.01 Aligned_cols=270 Identities=16% Similarity=0.165 Sum_probs=182.6
Q ss_pred hhHHHHHHHHHHhccc-----EEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCccccccc
Q 004579 144 HRCWEDIFDAITNARH-----MIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLK 218 (744)
Q Consensus 144 ~~~~~~l~~aI~~Ak~-----~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~ 218 (744)
-+.|+.+.+.|++|.+ +|.|+-|.+. ...++.++|.+||++|++|++|| +-.- . +.
T Consensus 338 Y~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~~---------------~~s~ii~aL~~Aa~~Gk~V~v~v-eLkA-r--fd 398 (672)
T TIGR03705 338 YESFDPVVEFLRQAAEDPDVLAIKQTLYRTS---------------KDSPIIDALIEAAENGKEVTVVV-ELKA-R--FD 398 (672)
T ss_pred ccCHHHHHHHHHHHhcCCCceEEEEEEEEec---------------CCcHHHHHHHHHHHcCCEEEEEE-Eehh-h--cc
Confidence 4567889999999998 8999988763 24699999999999999999999 6211 1 00
Q ss_pred cccccCCCcHHHHHHhcCCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCC
Q 004579 219 KDGLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCD 298 (744)
Q Consensus 219 ~~g~~~~~~~~~~~~l~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~ 298 (744)
...+-.+.+.|+++||+|+.-- ..+..|+|+++||.+..+ +-+-.+++|.-|...
T Consensus 399 -----e~~ni~wa~~le~aG~~viyg~----------------~~~k~H~K~~li~r~~~~----~~~~y~~igTgN~n~ 453 (672)
T TIGR03705 399 -----EEANIRWARRLEEAGVHVVYGV----------------VGLKTHAKLALVVRREGG----ELRRYVHLGTGNYHP 453 (672)
T ss_pred -----chhhHHHHHHHHHcCCEEEEcC----------------CCeeeeeEEEEEEEeeCC----ceEEEEEecCCCCCC
Confidence 0113467788999999987511 246899999999986211 122256666555443
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeee-eeChHHHHHHHHHHHHHHHhcCCccccccccc
Q 004579 299 GRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSR-LEGPIAWDVLFNFEQRWRKQGGKDVLVHLREL 377 (744)
Q Consensus 299 ~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~-i~Gpaa~dl~~~F~~rW~~~~~~~~l~~~~~~ 377 (744)
. . ...|.|+++. ..+..+.|+...|..-|....... +
T Consensus 454 ~----------------------------------t-a~~y~D~~l~t~~~~i~~d~~~~F~~l~~~~~~~~-------~ 491 (672)
T TIGR03705 454 K----------------------------------T-ARLYTDLSLFTADPEIGRDVARVFNYLTGYSRPPK-------F 491 (672)
T ss_pred c----------------------------------c-cccccceeEEEeChHHHHHHHHHHHHhhCCCcchh-------h
Confidence 2 0 1458999998 788899999999998775221100 0
Q ss_pred CCCCCCCCCCCCCCCCCCceeeeeecccCCcccCCCCChHHHhhcccccCCCCcchhHHHHHHHHHHHhccc----EEEE
Q 004579 378 GDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKN----FIYI 453 (744)
Q Consensus 378 ~~~~~p~~~~~~~~~~~~~~vQv~rS~~~~~~~~~p~~p~~~~~~~l~~~~~~~~e~sI~~ay~~aI~~A~~----~IyI 453 (744)
. .|..+|. .....+.+.+.+.|.+||+ +|+|
T Consensus 492 ~--------------------------------------------~l~~~P~-~~~~~~~~~i~~ei~~Ak~g~~~~I~i 526 (672)
T TIGR03705 492 K--------------------------------------------HLLVSPF-TLRKRLLELIDREIENARAGKPARIIA 526 (672)
T ss_pred H--------------------------------------------HHHhCcc-hHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 0 0111111 1356788889999999999 9999
Q ss_pred eeccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEe-------cCCCCCCCCCchhHHHHHHHH
Q 004579 454 ENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVV-------PMWPEGFPESGSVQAILDWQR 526 (744)
Q Consensus 454 enqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~Ivl-------P~~p~g~~~~~~~~~i~~~~~ 526 (744)
.++||. |. .+..+|..|.++| |+|.+++ |..| |.++...+
T Consensus 527 k~n~l~-------D~---------------~ii~aL~~As~aG--V~V~LivRGiCcL~pgip-g~sd~i~v-------- 573 (672)
T TIGR03705 527 KMNSLV-------DP---------------DLIDALYEASQAG--VKIDLIVRGICCLRPGVP-GLSENIRV-------- 573 (672)
T ss_pred EcCCCC-------CH---------------HHHHHHHHHHHCC--CeEEEEEecccccCCCCC-CCCCCEEE--------
Confidence 999964 22 4567788888899 7777777 3322 11222111
Q ss_pred hhhhhhHHHHHHHHHHcCCCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcceeeEeeeeEEEEeceEE
Q 004579 527 RTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYI 606 (744)
Q Consensus 527 rt~~~~~~~i~~~L~~~Gv~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK~mIVDD~~~ 606 (744)
+ +++..+++ |+++ +.|.+ . ||.++
T Consensus 574 ~-------siv~r~Le-h~rI-------------------y~f~~-------------------------~----~d~~~ 597 (672)
T TIGR03705 574 R-------SIVGRFLE-HSRI-------------------YYFGN-------------------------G----GEEKV 597 (672)
T ss_pred E-------EEhhHhhC-cCEE-------------------EEEeC-------------------------C----CCcEE
Confidence 1 13444444 4443 12222 0 68899
Q ss_pred EEcCccCCcccccCCCCcceEEEeecCCc
Q 004579 607 IIGSANINQRSMEGARDTEIAMGGYQPYH 635 (744)
Q Consensus 607 iIGSANin~RS~~g~rDsEi~l~i~d~~~ 635 (744)
.||||||+.|||.. ..|+++.++|+..
T Consensus 598 ~igSAn~m~Rnl~~--r~E~~~~i~d~~~ 624 (672)
T TIGR03705 598 YISSADWMTRNLDR--RVEVLFPIEDPTL 624 (672)
T ss_pred EEECCCCCCCcccc--eEEEEEEEcCHHH
Confidence 99999999999974 4999999999863
No 16
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.69 E-value=6.5e-17 Score=154.73 Aligned_cols=88 Identities=22% Similarity=0.308 Sum_probs=80.0
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEE-EeCCCC----CCeeEEEEEeecccccCCCccceEEecccCCCCC-----
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTV-KDDNPI----GATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNP----- 70 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~v-kd~d~~----~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~----- 70 (744)
|++| +.||.|||+|+|+|+|.+++|+|+| +++|.. ++++||+++||+++|..|+.+++||||.+.++++
T Consensus 45 v~~~-~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~ 123 (146)
T cd04013 45 SKLK-TDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGK 123 (146)
T ss_pred EEcC-CCCCcceeeEEecCCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccc
Confidence 4567 8999999999999999999999999 676666 5799999999999999999999999999999998
Q ss_pred --CCCCceEEEEEEeeccccc
Q 004579 71 --ISSGSKIHVKLQYFDVTKD 89 (744)
Q Consensus 71 --~k~~~~IrV~lqf~p~~~~ 89 (744)
++.+++|||.+||+++...
T Consensus 124 ~~~~~~~~lrik~rf~~~~~l 144 (146)
T cd04013 124 EGKGESPSIRIKARYQSTRVL 144 (146)
T ss_pred cccCCCCEEEEEEEEEEeeeC
Confidence 7888999999999987654
No 17
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.66 E-value=2.4e-16 Score=153.82 Aligned_cols=83 Identities=54% Similarity=1.028 Sum_probs=79.1
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCCCCCCeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEEEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVK 80 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV~ 80 (744)
|++| +.||+|||+|+|+|+|..+.|+|+|+|.|.+|+++||+++||++++..|..++.||+|.+.+||+++.+++|||.
T Consensus 76 v~~~-~~nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~ 154 (158)
T cd04015 76 VIEN-SENPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVS 154 (158)
T ss_pred EeCC-CCCCccceEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEE
Confidence 4677 899999999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred EEee
Q 004579 81 LQYF 84 (744)
Q Consensus 81 lqf~ 84 (744)
+||+
T Consensus 155 ~~f~ 158 (158)
T cd04015 155 LQFT 158 (158)
T ss_pred EEEC
Confidence 9985
No 18
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.58 E-value=5e-15 Score=137.87 Aligned_cols=81 Identities=17% Similarity=0.382 Sum_probs=70.7
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCCCCC-CeeEEEEEeecc-cccCCCccceEEecccCCCCCCCCCceEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVE-EVLGGEEVDKWVEILDEDRNPISSGSKIH 78 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~-~~~iG~~~ip~~-~~~~g~~v~~w~~l~~~~~k~~k~~~~Ir 78 (744)
|+.|.+.||+|||+|+|+|+|....|.|+|+|+|.++ +++||++.||+. .+..|+.++.||+|.+.+|++ ..+.||
T Consensus 39 v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~--~~g~i~ 116 (121)
T cd04016 39 TAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGED--KEGMIN 116 (121)
T ss_pred EccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCccCCC--CceEEE
Confidence 3445479999999999999998889999999999998 689999999996 678999999999998766664 469999
Q ss_pred EEEEe
Q 004579 79 VKLQY 83 (744)
Q Consensus 79 V~lqf 83 (744)
+.|+|
T Consensus 117 l~l~y 121 (121)
T cd04016 117 LVFSY 121 (121)
T ss_pred EEEeC
Confidence 99875
No 19
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.56 E-value=4.9e-14 Score=139.27 Aligned_cols=145 Identities=21% Similarity=0.321 Sum_probs=110.3
Q ss_pred hhHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCcccccccccccc
Q 004579 144 HRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLM 223 (744)
Q Consensus 144 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~g~~ 223 (744)
..+++.++++|.+|+++|+|+.|.+++.. .. ....|.++|++|+++||+|+||+ |........
T Consensus 20 ~~~~~~i~~~I~~A~~~I~i~~~~~~~~~-----~~-----~~~~l~~~L~~a~~rGv~V~il~-~~~~~~~~~------ 82 (176)
T cd00138 20 RSDLDALLEAISNAKKSIYIASFYLSPLI-----TE-----YGPVILDALLAAARRGVKVRILV-DEWSNTDLK------ 82 (176)
T ss_pred chHHHHHHHHHHhhheEEEEEEeEecccc-----cc-----cchHHHHHHHHHHHCCCEEEEEE-cccccCCch------
Confidence 46789999999999999999999876422 01 36799999999999999999999 443322110
Q ss_pred CCCcHHHHHHhcCC---CcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCC
Q 004579 224 ATHDEETEKFFQGT---DVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGR 300 (744)
Q Consensus 224 ~~~~~~~~~~l~~~---gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R 300 (744)
........|... ++++...+... . ...++|+|++|||++ ++++||.|+...+
T Consensus 83 --~~~~~~~~l~~~~~~~i~~~~~~~~~-----------~-~~~~~H~K~~iiD~~-----------~~~vGS~N~~~~~ 137 (176)
T cd00138 83 --ISSAYLDSLRALLDIGVRVFLIRTDK-----------T-YGGVLHTKLVIVDDE-----------TAYIGSANLDGRS 137 (176)
T ss_pred --HHHHHHHHHHHhhcCceEEEEEcCCc-----------c-cccceeeeEEEEcCC-----------EEEEECCcCChhh
Confidence 012345556554 78876554211 0 247999999999999 9999999999865
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeCh--HHHHHHHHHHHHHHHh
Q 004579 301 YDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGP--IAWDVLFNFEQRWRKQ 365 (744)
Q Consensus 301 ~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gp--aa~dl~~~F~~rW~~~ 365 (744)
+ ..++|+.+.+++| +|.++.+.|.+.|+..
T Consensus 138 ~-----------------------------------~~~~e~~~~~~~~~~~~~~~~~~f~~~w~~~ 169 (176)
T cd00138 138 L-----------------------------------TLNSEVGVVIYDPASLAADLKASLERDWNST 169 (176)
T ss_pred h-----------------------------------hhhcceEEEEeChHHHHHHHHHHHHHHHhcC
Confidence 4 1457999999999 7999999999999864
No 20
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.52 E-value=1.1e-13 Score=155.07 Aligned_cols=147 Identities=19% Similarity=0.205 Sum_probs=106.5
Q ss_pred CCceeeeeecccCCcccCCCCChHHHhhcccccCCCCcchhHHHHHHHHHHHhcccEEEEeeccccccccccccCCCCcc
Q 004579 394 DTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPE 473 (744)
Q Consensus 394 ~~~~vQv~rS~~~~~~~~~p~~p~~~~~~~l~~~~~~~~e~sI~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~ 473 (744)
.+|.+|++.|++.+. .|+. .-.|.+++|.++|.+||++|+|+++||+++. .
T Consensus 4 ~~~~~~~vesiP~~~--~~~~-----------------~~~~t~~~~~~lI~~Ak~~I~I~s~yf~~~d-----~----- 54 (424)
T PHA02820 4 DNTIAVITETIPIGM--QFDK-----------------VYLSTFNFWREILSNTTKTLDISSFYWSLSD-----E----- 54 (424)
T ss_pred cccEEEEEEecCCCC--CCCC-----------------CCCCHHHHHHHHHHhhCcEEEEEeEEEecCc-----c-----
Confidence 457889999998653 2321 1357899999999999999999999999531 1
Q ss_pred hhhhcccchHHHHHHHHHHHHhCCceEEEEEecCCCCCCCCCchhHHHHHHHHhhhhhhHHHHHHHHHHcCCCCCCCCce
Q 004579 474 EINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYL 553 (744)
Q Consensus 474 ~~~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~Gv~~~p~~yl 553 (744)
. ....+..+..+|.+|++|| |+|+|+++.. +. .. + ..+.|+++|+++.
T Consensus 55 -~--~~~~G~~i~~aL~~aA~rG--V~VRIL~d~~--~~---~~----------~-------~~~~L~~aGv~v~----- 102 (424)
T PHA02820 55 -V--GTNFGTMILNEIIQLPKRG--VRVRIAVNKS--NK---PL----------K-------DVELLQMAGVEVR----- 102 (424)
T ss_pred -c--cchhHHHHHHHHHHHHHCC--CEEEEEECCC--CC---ch----------h-------hHHHHHhCCCEEE-----
Confidence 0 0112567888999999999 9999999852 11 10 1 2467889998751
Q ss_pred EEeecCCcccccCCccCCCCCCCCchhHHHHHhhcceeeEeeeeEEEEeceEEEEcCccCCcccccCCCCcceEEEeec
Q 004579 554 TFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQ 632 (744)
Q Consensus 554 ~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK~mIVDD~~~iIGSANin~RS~~g~rDsEi~l~i~d 632 (744)
.|... .+. ....|+|+||||++++.|||+||+.||+..+ .|+++.+.+
T Consensus 103 -~~~~~--------~~~--------------------~~~~HrK~~VIDg~~~~iGS~Nid~rsl~~n--~E~gv~i~~ 150 (424)
T PHA02820 103 -YIDIT--------NIL--------------------GGVLHTKFWISDNTHIYLGSANMDWRSLTQV--KELGIAIFN 150 (424)
T ss_pred -EEecC--------CCC--------------------cccceeeEEEECCCEEEEeCCcCChhhhhhC--CceEEEEec
Confidence 22110 011 1379999999999999999999999999755 888888765
No 21
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.50 E-value=6.1e-14 Score=131.46 Aligned_cols=78 Identities=15% Similarity=0.258 Sum_probs=72.4
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCCCC-------CCeeEEEEEeecccccCCCccceEEecccCCCCCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPI-------GATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISS 73 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~-------~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~ 73 (744)
|++| +.||+|||+|+|+|+++.+.|+|+|+|+|.+ ++++||++.||++++..|..++.||+|.+.+++++|.
T Consensus 41 ~~~~-~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~ 119 (126)
T cd08379 41 TVED-SSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKK 119 (126)
T ss_pred cccC-CCCCcceeEEEEEecCCCCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccC
Confidence 5678 8999999999999999999999999999987 7899999999999999999999999999888888888
Q ss_pred CceEEE
Q 004579 74 GSKIHV 79 (744)
Q Consensus 74 ~~~IrV 79 (744)
.++|+.
T Consensus 120 ~g~l~~ 125 (126)
T cd08379 120 MGELEC 125 (126)
T ss_pred CcEEEe
Confidence 898875
No 22
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.46 E-value=4.2e-13 Score=148.33 Aligned_cols=146 Identities=16% Similarity=0.217 Sum_probs=101.5
Q ss_pred HHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhh-hcCCeEEEEEeCCCccccccccccccC
Q 004579 146 CWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKA-SEGVRVCMLVWDDRTSVSLLKKDGLMA 224 (744)
Q Consensus 146 ~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA-~rGV~VriLvwD~~~s~~~~~~~g~~~ 224 (744)
+.++++++|.+||++|+|+++.|.|.. +.+.. ...+..|.++|++|| +|||+||||+ +..+.....
T Consensus 217 ~~~~ll~~I~~Ak~~I~I~t~yf~P~~---~~d~~--~~~~~~i~~AL~~AAa~RGV~VRILv-~~~~~~~~~------- 283 (369)
T PHA03003 217 DADVVLHKIKSAKKSIDLELLSLVPVI---REDDK--TTYWPDIYNALIRAAINRGVKVRLLV-GSWKKNDVY------- 283 (369)
T ss_pred CHHHHHHHHHHHhhEEEEEEeccccEE---eeCCC--CccHHHHHHHHHHHHHcCCCEEEEEE-ecCCcCCch-------
Confidence 458999999999999999999876522 22210 113579999999985 9999999998 875432110
Q ss_pred CCcHHHHHHhcCCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCCC
Q 004579 225 THDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTP 304 (744)
Q Consensus 225 ~~~~~~~~~l~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt~ 304 (744)
.....+.|+.+|+++.+.-+ + ..+.+|+|++|||++ +|||||.|+...++..
T Consensus 284 --~~~~~~~L~~~G~~~~i~vr-------i-------~~~~~H~K~~VVD~~-----------~a~iGS~N~d~~s~~~- 335 (369)
T PHA03003 284 --SMASVKSLQALCVGNDLSVK-------V-------FRIPNNTKLLIVDDE-----------FAHITSANFDGTHYLH- 335 (369)
T ss_pred --hhhHHHHHHHcCCCCCceEe-------e-------ecCCCCceEEEEcCC-----------EEEEeccccCchhhcc-
Confidence 12456678888855210000 0 012289999999999 9999999997754421
Q ss_pred CccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeChHHHHHHHHHHHHHHHh
Q 004579 305 FHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQ 365 (744)
Q Consensus 305 ~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~ 365 (744)
..|.++ ...+|++|.+++..|.++|+..
T Consensus 336 --------------------------------~~e~~~-~~~~~~~a~~l~~~F~~dW~~~ 363 (369)
T PHA03003 336 --------------------------------HAFVSF-NTIDKELVKELSAIFERDWTSS 363 (369)
T ss_pred --------------------------------CCCeEE-ecCChhHHHHHHHHHHHHhCCc
Confidence 122332 2468999999999999999854
No 23
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=99.42 E-value=1.6e-10 Score=124.59 Aligned_cols=335 Identities=17% Similarity=0.173 Sum_probs=189.8
Q ss_pred HHHHHHHHHHhcccEEEEEEeccCc---ceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCccccccccccc
Q 004579 146 CWEDIFDAITNARHMIYITGWSVYT---EISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGL 222 (744)
Q Consensus 146 ~~~~l~~aI~~Ak~~I~I~~w~~~~---~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~g~ 222 (744)
..++.++.|+.|+++++|..|-++- ++++. +. ....|..+..+|..++.+||.||+.. +...... .+
T Consensus 73 T~eaW~~Ll~sA~~eldIas~ywsL~~~d~~~~--ds--St~~G~~vy~~L~~~~~~gIsiriA~-~~p~~~~-~~---- 142 (456)
T KOG3603|consen 73 TKEAWLELLSTAQEELDIASFYWSLTGKDTGVV--DS--STQYGEQVYNTLLALAKSGVKIRIAQ-SYPSGGP-PN---- 142 (456)
T ss_pred HHHHHHHHhhccceEEEEEEEeeccccceeccC--CC--cchHHHHHHHHHHHhccCCeEEEEEe-ecCCCCC-Cc----
Confidence 4578899999999999998765432 11111 11 11257899999999999999999986 4332111 11
Q ss_pred cCCCcHHHHHHhcCCC-cEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCC
Q 004579 223 MATHDEETEKFFQGTD-VHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRY 301 (744)
Q Consensus 223 ~~~~~~~~~~~l~~~g-V~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~ 301 (744)
.-...|...| ++++-.+-+. .....-.|-|..|||++ --|+||.|+...-.
T Consensus 143 ------~d~~~Le~~Gaa~vr~id~~~-----------l~g~GvlHtKf~vvD~k-----------hfylGSaNfDWrSl 194 (456)
T KOG3603|consen 143 ------ADLQVLESLGLAQVRSIDMNR-----------LTGGGVLHTKFWVVDIK-----------HFYLGSANFDWRSL 194 (456)
T ss_pred ------ccHHHHHhCCCceEEeecccc-----------cccCceEEEEEEEEecc-----------eEEEeccccchhhc
Confidence 1234566666 6665432111 11145689999999999 89999999985311
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeee-Ch-HHHHHHHHHHHHHHHhcCCcccccccccCC
Q 004579 302 DTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLE-GP-IAWDVLFNFEQRWRKQGGKDVLVHLRELGD 379 (744)
Q Consensus 302 Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~-Gp-aa~dl~~~F~~rW~~~~~~~~l~~~~~~~~ 379 (744)
| .-..+++.++ -| .+.||...|++.|..........+.... .
T Consensus 195 -T----------------------------------qvkElGv~v~NCpclakDL~kiFe~yW~lg~~~s~~p~~wp~-~ 238 (456)
T KOG3603|consen 195 -T----------------------------------QVKELGVVVRNCPCLAKDLKKIFERYWYLGNAKSLIPKKWPN-C 238 (456)
T ss_pred -c----------------------------------ceeEeeeEEecChhHHHHHHHHHHHHhcCCCCCccCCCCCcc-c
Confidence 0 1124445554 34 7999999999999875443211000000 0
Q ss_pred CCCCC---CCCCCCCCCCCceeeeeecccCCcccCCCCChHHHhhcccccCCCCcchhHHHHHHHHHHHhcccEEEEe-e
Q 004579 380 IIIPP---SPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIE-N 455 (744)
Q Consensus 380 ~~~p~---~~~~~~~~~~~~~vQv~rS~~~~~~~~~p~~p~~~~~~~l~~~~~~~~e~sI~~ay~~aI~~A~~~IyIe-n 455 (744)
...+. .|....-+......++..| ..+| +.++. + -=.+|+++.|..|+.||||. -
T Consensus 239 ~st~~N~~~p~~~~~dg~~~~~y~saS-----P~~~-------------~~~gr--t-~DL~ail~~i~~A~~fv~isVM 297 (456)
T KOG3603|consen 239 YSTHYNKPLPMKIAVDGTPATPYISAS-----PPPL-------------NPSGR--T-WDLEAILNTIDEAQKFVYISVM 297 (456)
T ss_pred ccccccccCcceeecCCCCcceEEccC-----CCCC-------------CCCCC--c-hhHHHHHHHHHHHhhheeeeeh
Confidence 00000 0000000111122233222 1111 11111 1 12679999999999999997 5
Q ss_pred ccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEecCCCCCCCCCchhHHHHHHHHhhhhhhHHH
Q 004579 456 QYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKD 535 (744)
Q Consensus 456 qYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~rt~~~~~~~ 535 (744)
+||-+..|.-|. .-- +|-.+|.+|+-|| |+|++++..|++..+ .+..+++ +
T Consensus 298 dY~Ps~~y~k~~------------~fw-~iDdaiR~aa~Rg--V~vR~lvs~~~~~~~---~m~~~L~----S------- 348 (456)
T KOG3603|consen 298 DYFPSTIYSKNH------------RFW-EIDDAIRRAAVRG--VKVRLLVSCWKHSEP---SMFRFLR----S------- 348 (456)
T ss_pred hccchheeecCc------------chh-hhhHHHHHHhhcc--eEEEEEEeccCCCCc---hHHHHHH----H-------
Confidence 777655443221 111 4555677777788 999999999875433 2222211 1
Q ss_pred HHHHHHH--cCCCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcceeeEeeeeEEEEeceEEEEcCccC
Q 004579 536 VVQALRA--KGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANI 613 (744)
Q Consensus 536 i~~~L~~--~Gv~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK~mIVDD~~~iIGSANi 613 (744)
.+.|.. +...+ =++||-. |...- ..-+| ...-|+|.||-++ .++||++|+
T Consensus 349 -Lq~l~~~~~~~~i----qvk~f~V------------P~~~~-~~ip~---------~Rv~HnKymVTe~-aayIGTSNw 400 (456)
T KOG3603|consen 349 -LQDLSDPLENGSI----QVKFFIV------------PQTNI-EKIPF---------ARVNHNKYMVTES-AAYIGTSNW 400 (456)
T ss_pred -HHHhcCccccCce----EEEEEEe------------CCCcc-ccCch---------hhhccceeEEeec-ceeeeccCC
Confidence 122221 01111 1234321 11000 00011 1268999999887 899999999
Q ss_pred CcccccCCCCcceEEEeecCC
Q 004579 614 NQRSMEGARDTEIAMGGYQPY 634 (744)
Q Consensus 614 n~RS~~g~rDsEi~l~i~d~~ 634 (744)
..=-|..+ .-++|+|.++.
T Consensus 401 s~dYf~~T--aG~~ivv~q~~ 419 (456)
T KOG3603|consen 401 SGDYFTST--AGTAIVVRQTP 419 (456)
T ss_pred Cccceecc--CceEEEEecCC
Confidence 98888776 78899997764
No 24
>PRK12452 cardiolipin synthetase; Reviewed
Probab=99.40 E-value=8.6e-13 Score=151.38 Aligned_cols=139 Identities=16% Similarity=0.182 Sum_probs=107.7
Q ss_pred hhHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCcccccccccccc
Q 004579 144 HRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLM 223 (744)
Q Consensus 144 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~g~~ 223 (744)
..+++.++++|.+||++|+|++..|.| +..+.++|+.||+|||+|+||+ +..+......
T Consensus 343 ~~i~~~~l~~I~~A~~~I~I~tpYf~p---------------d~~l~~aL~~Aa~rGV~Vrii~-p~~~D~~~~~----- 401 (509)
T PRK12452 343 KSIRNTLLAVMGSAKKSIWIATPYFIP---------------DQETLTLLRLSAISGIDVRILY-PGKSDSIISD----- 401 (509)
T ss_pred HHHHHHHHHHHHHhhhEEEEECCccCC---------------CHHHHHHHHHHHHcCCEEEEEc-CCCCChHHHH-----
Confidence 468899999999999999999844322 3589999999999999999998 7654332111
Q ss_pred CCCcHHHHHHhcCCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCC
Q 004579 224 ATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDT 303 (744)
Q Consensus 224 ~~~~~~~~~~l~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt 303 (744)
.......+.|.++||++..+.+ ...|+|++|||++ +|+|||.|+....+
T Consensus 402 -~a~~~~~~~L~~aGv~I~~y~~-----------------~~lHaK~~ivD~~-----------~a~vGS~Nld~RS~-- 450 (509)
T PRK12452 402 -QASQSYFTPLLKAGASIYSYKD-----------------GFMHAKIVLVDDK-----------IATIGTANMDVRSF-- 450 (509)
T ss_pred -HHHHHHHHHHHHcCCEEEEecC-----------------CCeeeeEEEECCC-----------EEEEeCcccCHhHh--
Confidence 0112445677889999876542 2489999999999 99999999976433
Q ss_pred CCccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeChHHHHHHHHHHHHHHHhc
Q 004579 304 PFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQG 366 (744)
Q Consensus 304 ~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~ 366 (744)
+..|.+.++..+++.|.++...|.++|..+.
T Consensus 451 --------------------------------~~n~E~~~~i~~~~~~~~l~~~f~~d~~~s~ 481 (509)
T PRK12452 451 --------------------------------ELNYEIISVLYESETVHDIKRDFEDDFKHST 481 (509)
T ss_pred --------------------------------hhhhhccEEEECHHHHHHHHHHHHHHHHhCe
Confidence 1346677888899999999999999998653
No 25
>PRK13912 nuclease NucT; Provisional
Probab=99.39 E-value=7.2e-12 Score=124.64 Aligned_cols=140 Identities=16% Similarity=0.213 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccC
Q 004579 145 RCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMA 224 (744)
Q Consensus 145 ~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~g~~~ 224 (744)
++++.++++|++|+++|+|+.|.+. ...+.++|.+|++|||+|+||+ |+.++...
T Consensus 33 ~~~~~l~~~I~~Ak~sI~i~~Y~~~----------------~~~i~~aL~~Aa~RGV~VrIll-d~~~~~~~-------- 87 (177)
T PRK13912 33 DALNKLVSLISNARSSIKIAIYSFT----------------HKDIAKALKSAAKRGVKISIIY-DYESNHNN-------- 87 (177)
T ss_pred HHHHHHHHHHHhcccEEEEEEEEEc----------------hHHHHHHHHHHHHCCCEEEEEE-eCccccCc--------
Confidence 4678999999999999999987652 3589999999999999999998 87654311
Q ss_pred CCcHHHHHHhc-CCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCC
Q 004579 225 THDEETEKFFQ-GTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDT 303 (744)
Q Consensus 225 ~~~~~~~~~l~-~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt 303 (744)
+.....++. ..++++......... .......+|+|++|||++ ++++||.|++...+..
T Consensus 88 --~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~H~K~~viD~~-----------~~~iGS~N~t~~s~~~ 146 (177)
T PRK13912 88 --DQSTIGYLDKYPNIKVCLLKGLKAK--------NGKYYGIMHQKVAIIDDK-----------IVVLGSANWSKNAFEN 146 (177)
T ss_pred --chhHHHHHHhCCCceEEEecCcccc--------CcccccccceeEEEEcCC-----------EEEEeCCCCChhHhcc
Confidence 112222332 246666544211100 011234689999999999 9999999999754421
Q ss_pred CCccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeCh-HHHHHHHHHHHHHHHh
Q 004579 304 PFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGP-IAWDVLFNFEQRWRKQ 365 (744)
Q Consensus 304 ~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gp-aa~dl~~~F~~rW~~~ 365 (744)
=+++.+.++.| .+.++.+.|.+.|...
T Consensus 147 -----------------------------------N~E~~lii~d~~~~~~~~~~F~~~~~~s 174 (177)
T PRK13912 147 -----------------------------------NYEVLLITDDTETILKAKEYFQKMLGSC 174 (177)
T ss_pred -----------------------------------CCceEEEECCHHHHHHHHHHHHHHHHhc
Confidence 13567788887 6799999999999764
No 26
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.38 E-value=1.9e-12 Score=127.85 Aligned_cols=131 Identities=30% Similarity=0.398 Sum_probs=93.0
Q ss_pred hhHHHHHHHHHHHhcccEEEEeeccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEecCCCCCC
Q 004579 433 DRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGF 512 (744)
Q Consensus 433 e~sI~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP~~p~g~ 512 (744)
..++.+.++++|.+|++.|+|+++||.+.. ......+...|.+|.++| ++|+|++...+...
T Consensus 19 ~~~~~~~i~~~I~~A~~~I~i~~~~~~~~~----------------~~~~~~l~~~L~~a~~rG--v~V~il~~~~~~~~ 80 (176)
T cd00138 19 GRSDLDALLEAISNAKKSIYIASFYLSPLI----------------TEYGPVILDALLAAARRG--VKVRILVDEWSNTD 80 (176)
T ss_pred cchHHHHHHHHHHhhheEEEEEEeEecccc----------------cccchHHHHHHHHHHHCC--CEEEEEEcccccCC
Confidence 468899999999999999999999998521 000235778888998898 89999999754321
Q ss_pred CCCchhHHHHHHHHhhhhhhHHHHHHHHHHc---CCCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcc
Q 004579 513 PESGSVQAILDWQRRTMDMMYKDVVQALRAK---GIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARR 589 (744)
Q Consensus 513 ~~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~---Gv~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~ 589 (744)
. . ....+.+.|.++ |+++ +.+ .+.. .
T Consensus 81 ~----~-------------~~~~~~~~l~~~~~~~i~~--------~~~-----------~~~~-~-------------- 109 (176)
T cd00138 81 L----K-------------ISSAYLDSLRALLDIGVRV--------FLI-----------RTDK-T-------------- 109 (176)
T ss_pred c----h-------------HHHHHHHHHHHhhcCceEE--------EEE-----------cCCc-c--------------
Confidence 1 0 001134455554 4432 211 1100 0
Q ss_pred eeeEeeeeEEEEeceEEEEcCccCCcccccCCCCcceEEEeecCC
Q 004579 590 FMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPY 634 (744)
Q Consensus 590 ~~iyvHSK~mIVDD~~~iIGSANin~RS~~g~rDsEi~l~i~d~~ 634 (744)
....+|+|+||||++.+++||+|++.+|+.. +.|+++.+.+|.
T Consensus 110 ~~~~~H~K~~iiD~~~~~vGS~N~~~~~~~~--~~e~~~~~~~~~ 152 (176)
T cd00138 110 YGGVLHTKLVIVDDETAYIGSANLDGRSLTL--NSEVGVVIYDPA 152 (176)
T ss_pred cccceeeeEEEEcCCEEEEECCcCChhhhhh--hcceEEEEeChH
Confidence 1248999999999999999999999999974 599999998875
No 27
>PRK13912 nuclease NucT; Provisional
Probab=99.34 E-value=3.9e-12 Score=126.55 Aligned_cols=127 Identities=19% Similarity=0.258 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHhcccEEEEeeccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEecCCCCCCC
Q 004579 434 RSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFP 513 (744)
Q Consensus 434 ~sI~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP~~p~g~~ 513 (744)
+.+...++++|++|+++|+|+. |+++. ..+..+|.+|.+|| |+|+|+++.......
T Consensus 32 ~~~~~~l~~~I~~Ak~sI~i~~-Y~~~~---------------------~~i~~aL~~Aa~RG--V~VrIlld~~~~~~~ 87 (177)
T PRK13912 32 KDALNKLVSLISNARSSIKIAI-YSFTH---------------------KDIAKALKSAAKRG--VKISIIYDYESNHNN 87 (177)
T ss_pred HHHHHHHHHHHHhcccEEEEEE-EEEch---------------------HHHHHHHHHHHHCC--CEEEEEEeCccccCc
Confidence 4678899999999999999986 66531 25678888998999 999999997542111
Q ss_pred CCchhHHHHHHHHhhhhhhHHHHHHHHHH-cCCCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcceee
Q 004579 514 ESGSVQAILDWQRRTMDMMYKDVVQALRA-KGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMI 592 (744)
Q Consensus 514 ~~~~~~~i~~~~~rt~~~~~~~i~~~L~~-~Gv~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~i 592 (744)
.. .+ ...|.+ .++++ +. +.+.... .. ....
T Consensus 88 ----~~-------~~--------~~~l~~~~~~~~--------~~-----------~~~~~~~-~~----------~~~~ 118 (177)
T PRK13912 88 ----DQ-------ST--------IGYLDKYPNIKV--------CL-----------LKGLKAK-NG----------KYYG 118 (177)
T ss_pred ----ch-------hH--------HHHHHhCCCceE--------EE-----------ecCcccc-Cc----------cccc
Confidence 10 00 011211 12221 10 0000000 00 0013
Q ss_pred EeeeeEEEEeceEEEEcCccCCcccccCCCCcceEEEeecCCc
Q 004579 593 YVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYH 635 (744)
Q Consensus 593 yvHSK~mIVDD~~~iIGSANin~RS~~g~rDsEi~l~i~d~~~ 635 (744)
++|+|+||||++++++||+||+.+|+..| .|+.+.+.+|..
T Consensus 119 ~~H~K~~viD~~~~~iGS~N~t~~s~~~N--~E~~lii~d~~~ 159 (177)
T PRK13912 119 IMHQKVAIIDDKIVVLGSANWSKNAFENN--YEVLLITDDTET 159 (177)
T ss_pred ccceeEEEEcCCEEEEeCCCCChhHhccC--CceEEEECCHHH
Confidence 79999999999999999999999999755 999999988753
No 28
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.31 E-value=5.1e-12 Score=118.51 Aligned_cols=81 Identities=19% Similarity=0.405 Sum_probs=70.5
Q ss_pred CCCCCCCCCccceeEEEeccc------CCceEEEEEEeCCCCC-CeeEEEEEeeccccc--CCCccceEEecccCCCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAH------MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVL--GGEEVDKWVEILDEDRNPI 71 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah------~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~--~g~~v~~w~~l~~~~~k~~ 71 (744)
|+++ +.||+|||+|.|.+.+ ..+.|.|+|+|.|.++ +++||++.||++++. .|..++.||+|.+..+++.
T Consensus 37 v~~~-t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~ 115 (126)
T cd08682 37 VKEK-TTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDD 115 (126)
T ss_pred eecC-CCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCc
Confidence 4667 8999999999999877 4688999999999887 899999999999998 6888999999987666666
Q ss_pred CCCceEEEEEE
Q 004579 72 SSGSKIHVKLQ 82 (744)
Q Consensus 72 k~~~~IrV~lq 82 (744)
+..+.|+|.+|
T Consensus 116 ~~~Gei~l~~~ 126 (126)
T cd08682 116 KERGEIEVDIQ 126 (126)
T ss_pred cccceEEEEeC
Confidence 67899998775
No 29
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.30 E-value=6.8e-12 Score=121.42 Aligned_cols=84 Identities=20% Similarity=0.375 Sum_probs=72.1
Q ss_pred CCCCCCCCccceeEEEecccCC-ceEEEEEEeCCCCC-CeeEEEEEeecccccC----CCccceEEecccCCC-----CC
Q 004579 2 LKKEQSNPRWYESFHIYCAHMA-SNIIFTVKDDNPIG-ATLIGRAYVPVEEVLG----GEEVDKWVEILDEDR-----NP 70 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~~-~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~----g~~v~~w~~l~~~~~-----k~ 70 (744)
+++.+.||+|||+|.|+++++. +.|.|+|+|.+..+ +++||++.||++++.. ++.+++||+|.+..| |+
T Consensus 39 ~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~ 118 (150)
T cd04019 39 SQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKK 118 (150)
T ss_pred ccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCccccccc
Confidence 3343689999999999998864 69999999999775 8999999999999975 467899999998766 77
Q ss_pred CCCCceEEEEEEeec
Q 004579 71 ISSGSKIHVKLQYFD 85 (744)
Q Consensus 71 ~k~~~~IrV~lqf~p 85 (744)
.|..++|+|.++|..
T Consensus 119 ~k~~g~l~l~i~~~~ 133 (150)
T cd04019 119 RKFASRIHLRLCLDG 133 (150)
T ss_pred CcccccEEEEEEecC
Confidence 888999999998874
No 30
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.29 E-value=9.6e-12 Score=115.98 Aligned_cols=81 Identities=17% Similarity=0.335 Sum_probs=69.7
Q ss_pred CCCCCCCCCccceeEEEeccc-CCceEEEEEEeCCCCCCeeEEEEEeecccccC-----CCccceEEecccCCCCCCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAH-MASNIIFTVKDDNPIGATLIGRAYVPVEEVLG-----GEEVDKWVEILDEDRNPISSG 74 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah-~~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~-----g~~v~~w~~l~~~~~k~~k~~ 74 (744)
|++| +.||+|||+|.|++++ ....|.|+|+|.|..++++||++.||++++.. ++.+++||+|.+..+ .+..
T Consensus 34 v~~~-t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~--~~~~ 110 (121)
T cd08378 34 AIER-TSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG--GRVG 110 (121)
T ss_pred ccCC-CCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC--Cccc
Confidence 5677 8999999999999998 46889999999998899999999999999975 345789999987544 4567
Q ss_pred ceEEEEEEee
Q 004579 75 SKIHVKLQYF 84 (744)
Q Consensus 75 ~~IrV~lqf~ 84 (744)
++|++.++|-
T Consensus 111 G~i~l~~~~~ 120 (121)
T cd08378 111 GELMLAVWFG 120 (121)
T ss_pred eEEEEEEEec
Confidence 9999999873
No 31
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.29 E-value=1.2e-11 Score=115.00 Aligned_cols=82 Identities=16% Similarity=0.205 Sum_probs=72.7
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHV 79 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV 79 (744)
++.| +.||+|||+|.|++.+..+.|.|.|+|.|.++ +++||.+.||++++..|...+.|++|.+..+ .+..|.|++
T Consensus 39 ~~~~-t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~--~~~~G~l~l 115 (121)
T cd04042 39 TIYK-NLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNS--DEDLGYISL 115 (121)
T ss_pred eccC-CCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCC--ccCceEEEE
Confidence 4667 89999999999999988899999999999985 8999999999999999999999999987544 346799999
Q ss_pred EEEeec
Q 004579 80 KLQYFD 85 (744)
Q Consensus 80 ~lqf~p 85 (744)
.+++.|
T Consensus 116 ~~~~~~ 121 (121)
T cd04042 116 VVTLTP 121 (121)
T ss_pred EEEECC
Confidence 998875
No 32
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.27 E-value=1.8e-11 Score=114.88 Aligned_cols=86 Identities=26% Similarity=0.445 Sum_probs=76.6
Q ss_pred CCCCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCCCCCce
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSK 76 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~ 76 (744)
|++| +.||+|||+|.|++.|. ...|.|+|+|.+.++ +++||++.++++++..+...+.|++|.+.++++. .+.
T Consensus 32 v~~~-~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~--~~~ 108 (127)
T cd08373 32 VLEN-ELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEVTEPLLDSNGRPT--GAT 108 (127)
T ss_pred eeCC-CcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCceEEEEeCcCCCCCcc--cEE
Confidence 4677 89999999999999885 589999999999886 7999999999999999999999999998777653 589
Q ss_pred EEEEEEeeccccc
Q 004579 77 IHVKLQYFDVTKD 89 (744)
Q Consensus 77 IrV~lqf~p~~~~ 89 (744)
|++.++|.|+...
T Consensus 109 l~l~~~~~~~~~~ 121 (127)
T cd08373 109 ISLEVSYQPPDGA 121 (127)
T ss_pred EEEEEEEeCCCCc
Confidence 9999999998865
No 33
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.27 E-value=2e-11 Score=114.63 Aligned_cols=80 Identities=15% Similarity=0.294 Sum_probs=69.7
Q ss_pred CCCCccceeEEEecccC-CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEEEEEEe
Q 004579 6 QSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQY 83 (744)
Q Consensus 6 ~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV~lqf 83 (744)
+.||+|||+|+|++.-+ ...++|.|+|.|.++ +++||++.||++++..|..++.||+|.+..+++.+..++|++.++|
T Consensus 43 ~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~ 122 (126)
T cd08400 43 GPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARY 122 (126)
T ss_pred CCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEE
Confidence 78999999999997544 367999999998776 8999999999999999999999999987655455677999999999
Q ss_pred ec
Q 004579 84 FD 85 (744)
Q Consensus 84 ~p 85 (744)
.+
T Consensus 123 ~~ 124 (126)
T cd08400 123 SH 124 (126)
T ss_pred Ec
Confidence 86
No 34
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.25 E-value=1.7e-11 Score=112.45 Aligned_cols=79 Identities=20% Similarity=0.409 Sum_probs=68.6
Q ss_pred CCCCCCCCCccceeEEEecccC-CceEEEEEEeCCCCCCeeEEEEEeeccccc-CCCccceEEecccCCCCCCCCCceEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIGATLIGRAYVPVEEVL-GGEEVDKWVEILDEDRNPISSGSKIH 78 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~-~g~~v~~w~~l~~~~~k~~k~~~~Ir 78 (744)
|+++ +.||+|||+|.|+|++. .+.|.|.|+|.+.+++++||++.||+++++ .+...+.||+|.+ + ..+.|+
T Consensus 31 v~~~-t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~~~w~~L~~---~---~~G~i~ 103 (111)
T cd04052 31 VKKK-TNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVGQQWFPLSG---N---GQGRIR 103 (111)
T ss_pred eecc-CCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhccceeEECCC---C---CCCEEE
Confidence 3556 89999999999999986 578999999999889999999999999997 4567899999964 2 358999
Q ss_pred EEEEeecc
Q 004579 79 VKLQYFDV 86 (744)
Q Consensus 79 V~lqf~p~ 86 (744)
+.++|+|+
T Consensus 104 ~~~~~~p~ 111 (111)
T cd04052 104 ISALWKPV 111 (111)
T ss_pred EEEEEecC
Confidence 99999985
No 35
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.22 E-value=4.4e-11 Score=111.38 Aligned_cols=112 Identities=27% Similarity=0.385 Sum_probs=73.8
Q ss_pred HHHHHhcccEEEEeeccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEecCCCCCCCCCchhHH
Q 004579 441 IHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQA 520 (744)
Q Consensus 441 ~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP~~p~g~~~~~~~~~ 520 (744)
+++|.+|+++|+|..+||... .+...+..+.++| ++|.|++........ ....
T Consensus 2 ~~~i~~A~~~i~i~~~~~~~~----------------------~i~~~l~~~~~~g--v~v~ii~~~~~~~~~-~~~~-- 54 (126)
T PF13091_consen 2 IDLIKSAQKSIWIASPYITDP----------------------DIIKALLDAAKRG--VKVRIIVDSNQDDSE-AINL-- 54 (126)
T ss_dssp HHHHHT-SSEEEEEESSS-SC----------------------HHHHHHHHHHHTT---EEEEEEECGGGHHC-CCSH--
T ss_pred HHHHhccCCEEEEEEEecCcH----------------------HHHHHHHHHHHCC--CeEEEEECCCccccc-hhhh--
Confidence 679999999999999999421 2456677777888 889999886321000 0000
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHcCCCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcceeeEeeeeEEE
Q 004579 521 ILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMI 600 (744)
Q Consensus 521 i~~~~~rt~~~~~~~i~~~L~~~Gv~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK~mI 600 (744)
.....+.+.+...|+++ + .++|+|++|
T Consensus 55 ----------~~~~~~~~~~~~~~i~v---------------------~----------------------~~~H~K~~i 81 (126)
T PF13091_consen 55 ----------ASLKELRELLKNAGIEV---------------------R----------------------NRLHAKFYI 81 (126)
T ss_dssp ----------HHHHHHHHHHHHTTHCE---------------------E----------------------S-B--EEEE
T ss_pred ----------HHHHHHHhhhccceEEE---------------------e----------------------cCCCcceEE
Confidence 01122344557777654 1 179999999
Q ss_pred EeceEEEEcCccCCcccccCCCCcceEEEeecCC
Q 004579 601 VDDEYIIIGSANINQRSMEGARDTEIAMGGYQPY 634 (744)
Q Consensus 601 VDD~~~iIGSANin~RS~~g~rDsEi~l~i~d~~ 634 (744)
+||+++++||+|++.+||. ++.|+++.+.++.
T Consensus 82 ~d~~~~iiGS~N~t~~~~~--~n~E~~~~~~~~~ 113 (126)
T PF13091_consen 82 IDDKVAIIGSANLTSSSFR--RNYELGVIIDDPE 113 (126)
T ss_dssp ETTTEEEEES--CSCCCSC--TSEEEEEEEECHH
T ss_pred ecCccEEEcCCCCCcchhc--CCcceEEEEECHH
Confidence 9999999999999999995 4599999998874
No 36
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.20 E-value=6.2e-11 Score=111.18 Aligned_cols=87 Identities=21% Similarity=0.332 Sum_probs=75.2
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHV 79 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV 79 (744)
|++| +.||+|||+|.|.+.+....|.|+|+|.|..+ +++||++.||+.++..+...+.||+|....++..+..++|++
T Consensus 37 v~~~-t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l 115 (126)
T cd08678 37 TQKN-TSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITV 115 (126)
T ss_pred EEec-CCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEE
Confidence 4567 89999999999999877889999999999887 899999999999999888889999997544333456899999
Q ss_pred EEEeecccc
Q 004579 80 KLQYFDVTK 88 (744)
Q Consensus 80 ~lqf~p~~~ 88 (744)
.++|.+...
T Consensus 116 ~~~~~~~~~ 124 (126)
T cd08678 116 EFLFMEPAE 124 (126)
T ss_pred EEEEecccc
Confidence 999987763
No 37
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.20 E-value=4.7e-11 Score=111.37 Aligned_cols=81 Identities=17% Similarity=0.286 Sum_probs=68.1
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHV 79 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV 79 (744)
|+++ +.||+|||+|.|+|++....|.|.|+|.|.++ +++||++.||++++..+..++.||+|... ++..+..+.|++
T Consensus 40 v~~k-t~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~-~~~~~~~G~i~l 117 (121)
T cd08401 40 TVEK-SLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQPV-DADSEVQGKVHL 117 (121)
T ss_pred EEEC-CCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEEEEcc-CCCCcccEEEEE
Confidence 3556 89999999999999987789999999999886 79999999999999999999999999742 222234688888
Q ss_pred EEEe
Q 004579 80 KLQY 83 (744)
Q Consensus 80 ~lqf 83 (744)
.+++
T Consensus 118 ~~~~ 121 (121)
T cd08401 118 ELRL 121 (121)
T ss_pred EEEC
Confidence 7754
No 38
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.18 E-value=2.3e-10 Score=106.53 Aligned_cols=124 Identities=19% Similarity=0.353 Sum_probs=84.6
Q ss_pred HHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCccc-cccccccccCCCcH
Q 004579 150 IFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSV-SLLKKDGLMATHDE 228 (744)
Q Consensus 150 l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~-~~~~~~g~~~~~~~ 228 (744)
+.++|++|+++|+|+.+.+. ...+.++|..++++||+|+|++ +..... ..... ....
T Consensus 1 l~~~i~~A~~~i~i~~~~~~----------------~~~i~~~l~~~~~~gv~v~ii~-~~~~~~~~~~~~-----~~~~ 58 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYIT----------------DPDIIKALLDAAKRGVKVRIIV-DSNQDDSEAINL-----ASLK 58 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS-----------------SCHHHHHHHHHHHTT-EEEEEE-ECGGGHHCCCSH-----HHHH
T ss_pred CHHHHhccCCEEEEEEEecC----------------cHHHHHHHHHHHHCCCeEEEEE-CCCccccchhhh-----HHHH
Confidence 56899999999999988761 3578999999999999999998 553211 11000 0011
Q ss_pred HHHHHhcCCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCCCCccc
Q 004579 229 ETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSL 308 (744)
Q Consensus 229 ~~~~~l~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt~~H~l 308 (744)
...+.++..|+++. .+.|.|++|||++ ++++|+.|++...|
T Consensus 59 ~~~~~~~~~~i~v~---------------------~~~H~K~~i~d~~-----------~~iiGS~N~t~~~~------- 99 (126)
T PF13091_consen 59 ELRELLKNAGIEVR---------------------NRLHAKFYIIDDK-----------VAIIGSANLTSSSF------- 99 (126)
T ss_dssp HHHHHHHHTTHCEE---------------------S-B--EEEEETTT-----------EEEEES--CSCCCS-------
T ss_pred HHHhhhccceEEEe---------------------cCCCcceEEecCc-----------cEEEcCCCCCcchh-------
Confidence 23344466677653 3699999999998 99999999988654
Q ss_pred cccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeChH-HHHHHHHHHHHH
Q 004579 309 FRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPI-AWDVLFNFEQRW 362 (744)
Q Consensus 309 ~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gpa-a~dl~~~F~~rW 362 (744)
...++..+.+++|. +.++.+.|.+.|
T Consensus 100 ----------------------------~~n~E~~~~~~~~~~~~~~~~~F~~~W 126 (126)
T PF13091_consen 100 ----------------------------RRNYELGVIIDDPELVKELIREFDQMW 126 (126)
T ss_dssp ----------------------------CTSEEEEEEEECHHHHHHHHHHTHH-H
T ss_pred ----------------------------cCCcceEEEEECHHHHHHHHHHHhccC
Confidence 12358999999995 999999999989
No 39
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.13 E-value=1.3e-10 Score=107.46 Aligned_cols=74 Identities=22% Similarity=0.370 Sum_probs=65.3
Q ss_pred CCCCccceeEEEecccC-CceEEEEEEeCCCCCCeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEEEEEEe
Q 004579 6 QSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQY 83 (744)
Q Consensus 6 ~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV~lqf 83 (744)
+.||+|||+|.|++.+. .+.|.|+|+|.+..++++||++.|+++++..+...+.||+|.+ +|+ ..+.|++.++|
T Consensus 44 ~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~-~~~---~~G~i~l~l~f 118 (118)
T cd08681 44 GQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELTL-KGR---YAGEVYLELTF 118 (118)
T ss_pred CCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcceEEEEEecHHHhhcCCCCCcEEecc-CCc---EeeEEEEEEEC
Confidence 78999999999999984 5789999999999889999999999999998888999999974 443 46899998876
No 40
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.11 E-value=1.8e-10 Score=107.08 Aligned_cols=81 Identities=26% Similarity=0.404 Sum_probs=69.1
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHV 79 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV 79 (744)
+++| +.||+|||+|.|.+.+..+.|.|+|+|.+..+ +++||.+.+|+.++..+...+.|...+..+||+. ++|+|
T Consensus 43 ~~~~-~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~---G~i~~ 118 (124)
T cd04044 43 VKKD-TSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPV---GELNY 118 (124)
T ss_pred eecC-CCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhhhcCCccc---eEEEE
Confidence 3567 89999999999999977899999999999875 7999999999999998877775554445677754 99999
Q ss_pred EEEeec
Q 004579 80 KLQYFD 85 (744)
Q Consensus 80 ~lqf~p 85 (744)
.++|.|
T Consensus 119 ~l~~~p 124 (124)
T cd04044 119 DLRFFP 124 (124)
T ss_pred EEEeCC
Confidence 999986
No 41
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.08 E-value=3.2e-10 Score=106.44 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=68.0
Q ss_pred CCCCCCCCCccceeEEEecccCC----ceEEEEEEeCCCC--CCeeEEEEEeeccccc-CCCccceEEecccCCCCCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMA----SNIIFTVKDDNPI--GATLIGRAYVPVEEVL-GGEEVDKWVEILDEDRNPISS 73 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~----~~l~~~vkd~d~~--~~~~iG~~~ip~~~~~-~g~~v~~w~~l~~~~~k~~k~ 73 (744)
|++| +.||+|||+|.|++.++. ..|.|+|+|.+.+ ++++||++.||++++. .|+....||+|... ++.-+.
T Consensus 38 v~~~-t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~-~~~~~~ 115 (127)
T cd04022 38 TKPK-DLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKR-GLFSRV 115 (127)
T ss_pred eEcC-CCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeC-CCCCCc
Confidence 4677 899999999999998753 5799999999977 5899999999999998 68899999999753 222235
Q ss_pred CceEEEEEEee
Q 004579 74 GSKIHVKLQYF 84 (744)
Q Consensus 74 ~~~IrV~lqf~ 84 (744)
.++|++.++++
T Consensus 116 ~G~l~l~~~~~ 126 (127)
T cd04022 116 RGEIGLKVYIT 126 (127)
T ss_pred cEEEEEEEEEc
Confidence 68999988876
No 42
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=99.05 E-value=1e-09 Score=125.72 Aligned_cols=136 Identities=21% Similarity=0.169 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccC
Q 004579 145 RCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMA 224 (744)
Q Consensus 145 ~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~g~~~ 224 (744)
.+.+.+.++|.+||++|+|++--| + ....+.++|+.||+|||+|+||+ +......+...
T Consensus 318 ~~~~~~~~~I~~A~~~I~I~tpYf------i---------p~~~i~~aL~~Aa~rGV~Vril~-p~~~d~~~~~~----- 376 (483)
T PRK01642 318 TIHQFLLTAIYSARERLWITTPYF------V---------PDEDLLAALKTAALRGVDVRIII-PSKNDSLLVFW----- 376 (483)
T ss_pred HHHHHHHHHHHHhccEEEEEcCCc------C---------CCHHHHHHHHHHHHcCCEEEEEe-CCCCCcHHHHH-----
Confidence 467789999999999999987222 2 14689999999999999999998 66433221110
Q ss_pred CCcHHHHHHhcCCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCCC
Q 004579 225 THDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTP 304 (744)
Q Consensus 225 ~~~~~~~~~l~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt~ 304 (744)
......+.|.++||++..+.. ...|.|++|||++ +++||+.|+....+.
T Consensus 377 -~~~~~~~~L~~~Gv~I~~y~~-----------------~~~HaK~~ivD~~-----------~~~vGS~N~d~rS~~-- 425 (483)
T PRK01642 377 -ASRAFFTELLEAGVKIYRYEG-----------------GLLHTKSVLVDDE-----------LALVGTVNLDMRSFW-- 425 (483)
T ss_pred -HHHHHHHHHHHcCCEEEEeCC-----------------CceEeEEEEECCC-----------EEEeeCCcCCHhHHh--
Confidence 012345567778999876531 2379999999999 999999999654331
Q ss_pred CccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeCh-HHHHHHHHHHHHHHHh
Q 004579 305 FHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGP-IAWDVLFNFEQRWRKQ 365 (744)
Q Consensus 305 ~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gp-aa~dl~~~F~~rW~~~ 365 (744)
-=+++.+.+.+| .+.++.+.|.++|...
T Consensus 426 ---------------------------------~N~E~~~~i~d~~~~~~l~~~f~~d~~~s 454 (483)
T PRK01642 426 ---------------------------------LNFEITLVIDDTGFAADLAAMQEDYFARS 454 (483)
T ss_pred ---------------------------------hhhcceEEEECHHHHHHHHHHHHHHHHhC
Confidence 013677888887 6899999999999764
No 43
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.04 E-value=6.8e-10 Score=102.95 Aligned_cols=74 Identities=20% Similarity=0.329 Sum_probs=62.5
Q ss_pred CCCCCCCCCccceeEEEecccCC-ceEEEEEEeCCCCCCeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMA-SNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHV 79 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~-~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV 79 (744)
|++| +.||+|||+|.|.+.+.. +.|.|+|+|.|.+++++||++.+|+.++..|...+.||+|.+ .+ .+.+++
T Consensus 41 vv~~-t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~iG~~~~~l~~l~~g~~~~~~~~L~~-~~-----~g~l~~ 113 (119)
T cd04036 41 TIKN-SINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSLNP-QG-----KEELEV 113 (119)
T ss_pred eecC-CCCCccceEEEEEeCcccCCEEEEEEEECCCCCCcccEEEEEEHHHCCCCCcEEEEEECCC-CC-----CceEEE
Confidence 4677 899999999999998753 569999999998888999999999999999999999999963 22 355665
Q ss_pred EE
Q 004579 80 KL 81 (744)
Q Consensus 80 ~l 81 (744)
.+
T Consensus 114 ~~ 115 (119)
T cd04036 114 EF 115 (119)
T ss_pred EE
Confidence 54
No 44
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.02 E-value=1.1e-09 Score=101.23 Aligned_cols=79 Identities=20% Similarity=0.419 Sum_probs=66.5
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHV 79 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV 79 (744)
+++| +.||+|||+|.|++.+....|.|.|+|.+.++ +++||++.+|+.++..|. +.||+|.+..++ .+..++|.+
T Consensus 39 ~~~~-t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~-~~~~G~i~l 114 (119)
T cd08377 39 TIYK-TLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGE--RKWYALKDKKLR-TRAKGSILL 114 (119)
T ss_pred eecC-CcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceeeEEEEEHHHCCCCC--ceEEECcccCCC-CceeeEEEE
Confidence 3567 89999999999999987889999999999865 799999999999998775 689999865433 235688988
Q ss_pred EEEe
Q 004579 80 KLQY 83 (744)
Q Consensus 80 ~lqf 83 (744)
.+++
T Consensus 115 ~~~~ 118 (119)
T cd08377 115 EMDV 118 (119)
T ss_pred EEEe
Confidence 8875
No 45
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.01 E-value=5e-10 Score=104.39 Aligned_cols=60 Identities=18% Similarity=0.461 Sum_probs=54.5
Q ss_pred CCCCccceeEEEecccCCceEEEEEEeCCCCCCeeEEEEEeecccccCCCcc--ceEEeccc
Q 004579 6 QSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEV--DKWVEILD 65 (744)
Q Consensus 6 ~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~v--~~w~~l~~ 65 (744)
+.||+|||.|.|++++..++|+|+|+|+|.+++|+||++.||+++|..++.. ..||+|..
T Consensus 40 ~~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 40 GSQPCWEQDFMFEINRLDLGLVIELWNKGLIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred CCCCceeeEEEEEEcCCCCEEEEEEEeCCCcCCCceEEEEEEhHHcccCCCCCCCccEecCh
Confidence 3599999999999999888899999999999999999999999999966555 88999963
No 46
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.01 E-value=1.1e-09 Score=102.20 Aligned_cols=80 Identities=19% Similarity=0.387 Sum_probs=65.4
Q ss_pred CCCCCCCCCccceeEEEecccC-CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCC---CCCCCc
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRN---PISSGS 75 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k---~~k~~~ 75 (744)
|++| +.||+|||+|.|++.+. .+.|.|+|+|.|.++ +++||.+.+|++++..+...+.||+|.+...+ ..+..+
T Consensus 38 v~~~-t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G 116 (123)
T cd04025 38 VVKK-SCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLG 116 (123)
T ss_pred eecC-CCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceE
Confidence 3567 89999999999999886 478999999999887 79999999999999988888999999864222 233456
Q ss_pred eEEEEE
Q 004579 76 KIHVKL 81 (744)
Q Consensus 76 ~IrV~l 81 (744)
.|++.+
T Consensus 117 ~l~~~~ 122 (123)
T cd04025 117 SLRLKV 122 (123)
T ss_pred EEEEEe
Confidence 676654
No 47
>PRK11263 cardiolipin synthase 2; Provisional
Probab=99.00 E-value=3.2e-09 Score=118.81 Aligned_cols=135 Identities=15% Similarity=0.148 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHhcccEEEEEE-eccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCcccccccccccc
Q 004579 145 RCWEDIFDAITNARHMIYITG-WSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLM 223 (744)
Q Consensus 145 ~~~~~l~~aI~~Ak~~I~I~~-w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~g~~ 223 (744)
.+.+.+.++|.+|+++|+|++ |.+ .+..|.++|+.||+|||+|+||+ +..+...+...
T Consensus 206 ~i~~~~~~~i~~A~~~I~I~tpYf~----------------p~~~l~~aL~~Aa~RGV~V~ii~-~~~~d~~~~~~---- 264 (411)
T PRK11263 206 DIERHYLKALRQARREVIIANAYFF----------------PGYRLLRALRNAARRGVRVRLIL-QGEPDMPIVRV---- 264 (411)
T ss_pred HHHHHHHHHHHHhceEEEEEecCcC----------------CCHHHHHHHHHHHHCCCEEEEEe-CCCCCcHHHHH----
Confidence 466789999999999999986 432 14689999999999999999999 76654433211
Q ss_pred CCCcHHHHHHhcCCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCC
Q 004579 224 ATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDT 303 (744)
Q Consensus 224 ~~~~~~~~~~l~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt 303 (744)
........|.++||++..+.. ...|.|++|||++ +++||+.|+....+ .
T Consensus 265 --a~~~~~~~Ll~~Gv~I~~y~~-----------------~~lHaK~~viD~~-----------~~~vGS~Nld~rS~-~ 313 (411)
T PRK11263 265 --GARLLYNYLLKGGVQIYEYCR-----------------RPLHGKVALMDDH-----------WATVGSSNLDPLSL-S 313 (411)
T ss_pred --HHHHHHHHHHHCCCEEEEecC-----------------CCceeEEEEECCC-----------EEEEeCCcCCHHHh-h
Confidence 112456678889999865431 2589999999999 99999999976322 0
Q ss_pred CCccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeCh-HHHHHHHHHHHHHHHh
Q 004579 304 PFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGP-IAWDVLFNFEQRWRKQ 365 (744)
Q Consensus 304 ~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gp-aa~dl~~~F~~rW~~~ 365 (744)
-=.++.+.|.+| .+.++...|++.+...
T Consensus 314 ----------------------------------lN~E~~~~i~d~~~a~~l~~~~~~~~~~~ 342 (411)
T PRK11263 314 ----------------------------------LNLEANLIIRDRAFNQTLRDNLNGLIAAD 342 (411)
T ss_pred ----------------------------------hhhhcCEEEeCHHHHHHHHHHHHHHHHhh
Confidence 002567888888 5788999999998633
No 48
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=98.99 E-value=6.5e-10 Score=103.43 Aligned_cols=63 Identities=14% Similarity=0.278 Sum_probs=55.4
Q ss_pred CCCCCCCCCccceeEEEecccC----CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecc
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM----ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEIL 64 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~----~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~ 64 (744)
|++| +.||+|||+|.|.+... ...|.|.|+|.|.++ +++||++.||+.++..++..+.|++|.
T Consensus 44 v~~~-tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~ 111 (120)
T cd08395 44 SKNN-NWSPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPLG 111 (120)
T ss_pred EecC-CCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEECc
Confidence 4566 89999999999999753 256999999999887 789999999999999988999999995
No 49
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=98.99 E-value=1.6e-09 Score=100.36 Aligned_cols=76 Identities=21% Similarity=0.510 Sum_probs=64.7
Q ss_pred CCCCCCCCCccceeEEEeccc-CCceEEEEEEeCCCCCCeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAH-MASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHV 79 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah-~~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV 79 (744)
|++| +.||+|||+|.|++.. ....|.|.|+|.|..++++||++.|+++++..+...+.||+|.+. ..++|++
T Consensus 45 ~~~~-t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~ 117 (121)
T cd08391 45 VIKE-NLNPKWNEVYEAVVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHL 117 (121)
T ss_pred ccCC-CCCCcccceEEEEeCCCCCCEEEEEEEecCCCCCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEE
Confidence 4567 9999999999999975 468999999999988889999999999999988889999999742 2366777
Q ss_pred EEEe
Q 004579 80 KLQY 83 (744)
Q Consensus 80 ~lqf 83 (744)
.+++
T Consensus 118 ~~~~ 121 (121)
T cd08391 118 KLEW 121 (121)
T ss_pred EEeC
Confidence 7653
No 50
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=98.98 E-value=7e-10 Score=101.52 Aligned_cols=64 Identities=25% Similarity=0.485 Sum_probs=57.3
Q ss_pred CCCCCCCCCcc-ceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccC---CCccceEEeccc
Q 004579 1 MLKKEQSNPRW-YESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLG---GEEVDKWVEILD 65 (744)
Q Consensus 1 vi~n~~~~P~W-ne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~---g~~v~~w~~l~~ 65 (744)
|++| +.||+| ||+|.|++.+. .+.|.|+|+|.|.++ +++||++.+++.++.. +..+++||+|++
T Consensus 38 v~~~-~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 38 VVKK-SLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred eecC-CCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 4677 899999 99999999985 368999999999987 6899999999999986 678999999986
No 51
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=98.98 E-value=6.5e-10 Score=103.40 Aligned_cols=62 Identities=18% Similarity=0.350 Sum_probs=54.7
Q ss_pred CCCCCCCCCccceeEEEecccC--CceEEEEEEeCCCCC--CeeEEEEEeecccccCCCccceEEec
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM--ASNIIFTVKDDNPIG--ATLIGRAYVPVEEVLGGEEVDKWVEI 63 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~--~~~l~~~vkd~d~~~--~~~iG~~~ip~~~~~~g~~v~~w~~l 63 (744)
|+++ +.||+|||+|.|++++. ...|.|+|+|.|..+ +++||++.||+.++..|+.+++||.|
T Consensus 54 v~~~-t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 54 TVPD-SANPLFHETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred cccC-CCCCccccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 3566 89999999999999884 357999999998764 68999999999999999999999986
No 52
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=98.97 E-value=2.2e-09 Score=104.05 Aligned_cols=84 Identities=24% Similarity=0.415 Sum_probs=70.6
Q ss_pred CCCCCCCCCccceeEEEecccC---------CceEEEEEEeCCCC--CCeeEEEEEeecccccCCCccceEEecccCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---------ASNIIFTVKDDNPI--GATLIGRAYVPVEEVLGGEEVDKWVEILDEDRN 69 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~---------~~~l~~~vkd~d~~--~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k 69 (744)
|+++ +.||+|||+|.|.+... ...|.|.|+|++.+ .+++||++.|+++.+..+..++.|++|.+ ..|
T Consensus 47 v~k~-TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~-~~k 124 (155)
T cd08690 47 TIKD-TNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMD-GRK 124 (155)
T ss_pred cccC-CCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhh-CCC
Confidence 5677 99999999999999654 34699999999986 48999999999999998888999999974 344
Q ss_pred CCCCCceEEEEEEeecccc
Q 004579 70 PISSGSKIHVKLQYFDVTK 88 (744)
Q Consensus 70 ~~k~~~~IrV~lqf~p~~~ 88 (744)
+ .|+.|+|.++-|.+-.
T Consensus 125 ~--~Gg~l~v~ir~r~p~~ 141 (155)
T cd08690 125 A--TGGKLEVKVRLREPLT 141 (155)
T ss_pred C--cCCEEEEEEEecCCCc
Confidence 3 5899999998776653
No 53
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.97 E-value=1.6e-09 Score=102.38 Aligned_cols=80 Identities=20% Similarity=0.361 Sum_probs=66.5
Q ss_pred CCCCCCCCccceeEEEecccCCceEEEEEEeCCCCC-CeeEEEEEeecccccCCC------ccceEEecccCCCCCCCCC
Q 004579 2 LKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGE------EVDKWVEILDEDRNPISSG 74 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~------~v~~w~~l~~~~~k~~k~~ 74 (744)
++| +.||+|||+|.|++......|.|.|+|.|.++ +++||++.||+.++..+. ..++||+|....++ -+..
T Consensus 46 ~~~-t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 123 (133)
T cd04033 46 IKK-TLNPKWNEEFFFRVNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSK-SRVK 123 (133)
T ss_pred EcC-CCCCcEeeEEEEEEcCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCC-Ccce
Confidence 566 89999999999999876788999999999887 799999999999998654 45799999753222 2457
Q ss_pred ceEEEEEEe
Q 004579 75 SKIHVKLQY 83 (744)
Q Consensus 75 ~~IrV~lqf 83 (744)
+.|++.+.|
T Consensus 124 G~l~~~~~~ 132 (133)
T cd04033 124 GHLRLYMAY 132 (133)
T ss_pred eEEEEEEee
Confidence 999998876
No 54
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=98.96 E-value=1.4e-09 Score=101.69 Aligned_cols=75 Identities=19% Similarity=0.304 Sum_probs=63.1
Q ss_pred CCCCCCCCccceeEEEecccC-----CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCcc-----ceEEecccCCCCC
Q 004579 2 LKKEQSNPRWYESFHIYCAHM-----ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEV-----DKWVEILDEDRNP 70 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~-----~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v-----~~w~~l~~~~~k~ 70 (744)
+++.+.||+|||+|+|.+.+. ...|.|.|+|.+.++ +++||.+.||+.++..+... ..||+|.+.+||+
T Consensus 40 ~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~ 119 (125)
T cd04051 40 DRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKP 119 (125)
T ss_pred ccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCc
Confidence 333389999999999999987 689999999999855 79999999999999976654 6899999888885
Q ss_pred CCCCceEEE
Q 004579 71 ISSGSKIHV 79 (744)
Q Consensus 71 ~k~~~~IrV 79 (744)
. +.|++
T Consensus 120 ~---G~~~~ 125 (125)
T cd04051 120 Q---GVLNF 125 (125)
T ss_pred C---eEEeC
Confidence 4 76653
No 55
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=98.96 E-value=1e-09 Score=99.50 Aligned_cols=62 Identities=23% Similarity=0.420 Sum_probs=55.0
Q ss_pred CCCCCCCCCccceeEEEecccC-CceEEEEEEeCCCCCCeeEEEEEeecccccCC--CccceEEeccc
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIGATLIGRAYVPVEEVLGG--EEVDKWVEILD 65 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g--~~v~~w~~l~~ 65 (744)
|+++ +.||+|||+|.|+|.++ .+.|.|+|+|.+. +++||++.||+.++..+ ..++.||+|.+
T Consensus 38 v~~~-t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 38 VKER-TNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGSLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred cccC-CCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEEEEEEHHHhhccccceeeeeEecCC
Confidence 4566 89999999999999995 6889999999987 89999999999999854 57999999964
No 56
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=98.95 E-value=2.4e-09 Score=99.70 Aligned_cols=79 Identities=22% Similarity=0.421 Sum_probs=64.2
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCCCCC-CeeEEEEEeecccccCC-CccceEEecccCCCCCCCCCceEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGG-EEVDKWVEILDEDRNPISSGSKIH 78 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g-~~v~~w~~l~~~~~k~~k~~~~Ir 78 (744)
|+++ +.||+|||.|.|++.+....|.|.|+|.|.++ +++||++.++++++.++ ..++.|++|.+.++. .+..+.|+
T Consensus 39 v~~~-t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~-~~~~G~i~ 116 (121)
T cd04054 39 TVWK-TLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPD-EEVQGEIH 116 (121)
T ss_pred eEcC-CCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCC-CccccEEE
Confidence 3567 89999999999999988789999999999887 79999999999999854 468999999653221 12457777
Q ss_pred EEE
Q 004579 79 VKL 81 (744)
Q Consensus 79 V~l 81 (744)
+.+
T Consensus 117 l~~ 119 (121)
T cd04054 117 LEL 119 (121)
T ss_pred EEE
Confidence 764
No 57
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=98.93 E-value=3.4e-09 Score=97.61 Aligned_cols=75 Identities=19% Similarity=0.265 Sum_probs=64.5
Q ss_pred CCCCCCCCCccceeEEEecccC-CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIH 78 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~Ir 78 (744)
|+++ +.||+|||+|.|++.+. ...|.|.|+|.|.++ +++||++.++++++..++..+.||+|.+. .++++
T Consensus 38 v~~~-t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~-------~G~~~ 109 (116)
T cd08376 38 VCSK-TLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDG-------EGSLL 109 (116)
T ss_pred cccC-CCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEccCC-------CcEEE
Confidence 4567 99999999999999886 689999999999886 89999999999999999999999999643 26676
Q ss_pred EEEEe
Q 004579 79 VKLQY 83 (744)
Q Consensus 79 V~lqf 83 (744)
+.+.+
T Consensus 110 ~~~~~ 114 (116)
T cd08376 110 LLLTL 114 (116)
T ss_pred EEEEe
Confidence 66554
No 58
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=98.93 E-value=2.8e-09 Score=99.70 Aligned_cols=81 Identities=16% Similarity=0.325 Sum_probs=65.7
Q ss_pred CCCCCCCCCccceeEEEeccc-CCceEEEEEEeCCCCC-CeeEEEEEeeccccc---CCCccceEEecccCC-CCCCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAH-MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVL---GGEEVDKWVEILDED-RNPISSG 74 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah-~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~---~g~~v~~w~~l~~~~-~k~~k~~ 74 (744)
|++| +.||+|||+|.|++.+ ....|.|+|+|.|..+ +++||++.|++++++ .+...+.||+|.+.. ++..+..
T Consensus 41 ~~~~-t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~ 119 (128)
T cd04024 41 TIPN-TLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVS 119 (128)
T ss_pred eecC-CcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCcccccc
Confidence 4567 8999999999999998 5689999999999885 899999999999998 345679999997652 2333457
Q ss_pred ceEEEEEE
Q 004579 75 SKIHVKLQ 82 (744)
Q Consensus 75 ~~IrV~lq 82 (744)
+.|++.++
T Consensus 120 G~i~l~~~ 127 (128)
T cd04024 120 GEIHLQFS 127 (128)
T ss_pred ceEEEEEE
Confidence 77877654
No 59
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.90 E-value=5.5e-09 Score=98.71 Aligned_cols=73 Identities=26% Similarity=0.497 Sum_probs=62.1
Q ss_pred CCCCCCCCccceeEEEecccCCceEEEEEEeCCCCC-CeeEEEEEeecccccC--CCccceEEecccCCCCCCCCCceEE
Q 004579 2 LKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLG--GEEVDKWVEILDEDRNPISSGSKIH 78 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~--g~~v~~w~~l~~~~~k~~k~~~~Ir 78 (744)
+++ +.||+|||+|.|++. ....|.|.|+|++.++ +++||++.|++++++. +...+.||+|. + .+.|+
T Consensus 54 ~~~-t~~P~Wne~f~~~v~-~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~-~-------~G~l~ 123 (132)
T cd04014 54 KPK-TNSPVWNEEFTTEVH-NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE-P-------QGKLH 123 (132)
T ss_pred cCC-CCCCCcceeEEEEcC-CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc-C-------CcEEE
Confidence 455 899999999999997 5578999999999876 6999999999999997 78899999995 2 36677
Q ss_pred EEEEee
Q 004579 79 VKLQYF 84 (744)
Q Consensus 79 V~lqf~ 84 (744)
+.+++.
T Consensus 124 l~~~~~ 129 (132)
T cd04014 124 VKIELK 129 (132)
T ss_pred EEEEEe
Confidence 777665
No 60
>PRK05443 polyphosphate kinase; Provisional
Probab=98.89 E-value=7.4e-09 Score=121.86 Aligned_cols=119 Identities=17% Similarity=0.170 Sum_probs=90.0
Q ss_pred HHHHHHHHhccc-----EEEEeeccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEecCCCCCC
Q 004579 438 DAYIHAIRRAKN-----FIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGF 512 (744)
Q Consensus 438 ~ay~~aI~~A~~-----~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP~~p~g~ 512 (744)
+..++.|++|.+ .|.|+--.+.+. ..+..++.+|+++| ++|.|+++..+-++
T Consensus 351 ~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~---------------------s~iv~aL~~Aa~~G--k~V~vlve~karfd 407 (691)
T PRK05443 351 DPVVEFLRQAAADPDVLAIKQTLYRTSKD---------------------SPIVDALIEAAENG--KQVTVLVELKARFD 407 (691)
T ss_pred hHHHHHHHHhccCCCeeEEEEEEEEecCC---------------------HHHHHHHHHHHHcC--CEEEEEEccCcccc
Confidence 567889999999 899865444321 14677888999999 89999999754111
Q ss_pred CCCchhHHHHHHHHhhhhhhHHHHHHHHHHcCCCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcceee
Q 004579 513 PESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMI 592 (744)
Q Consensus 513 ~~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~Gv~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~i 592 (744)
.++... .+++|+++|+++ +| .|.+ .
T Consensus 408 ----------e~~n~~-------~~~~L~~aGv~V-------~y-----------~~~~--------------------~ 432 (691)
T PRK05443 408 ----------EEANIR-------WARRLEEAGVHV-------VY-----------GVVG--------------------L 432 (691)
T ss_pred ----------HHHHHH-------HHHHHHHcCCEE-------EE-----------ccCC--------------------c
Confidence 122222 578999999976 12 2332 4
Q ss_pred EeeeeEEEEece-------EEEEcCccCCcccccCCCCcceEEEeecCCcc
Q 004579 593 YVHAKMMIVDDE-------YIIIGSANINQRSMEGARDTEIAMGGYQPYHL 636 (744)
Q Consensus 593 yvHSK~mIVDD~-------~~iIGSANin~RS~~g~rDsEi~l~i~d~~~~ 636 (744)
.+|||+|+||++ |+.|||+|+|.||...+ +|+++.+.++...
T Consensus 433 k~HaK~~lid~~e~~~~~~~~~iGTgN~n~~s~~~y--~D~~l~t~d~~i~ 481 (691)
T PRK05443 433 KTHAKLALVVRREGGGLRRYVHLGTGNYNPKTARLY--TDLSLLTADPEIG 481 (691)
T ss_pred cceeEEEEEEeecCCceeEEEEEcCCCCCcchhhhc--cceeEEEeChHHH
Confidence 899999999999 99999999999999877 9999998887654
No 61
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=98.88 E-value=2.2e-09 Score=98.29 Aligned_cols=63 Identities=25% Similarity=0.326 Sum_probs=55.0
Q ss_pred CCCCCCCCccceeEEEecccCC-----ceEEEEEEeCCCCC-CeeEEEEEeecccccCC---CccceEEeccc
Q 004579 2 LKKEQSNPRWYESFHIYCAHMA-----SNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGG---EEVDKWVEILD 65 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~~-----~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g---~~v~~w~~l~~ 65 (744)
+++ +.||+|||+|.|++..+. +.|.|+|+|.+.++ +++||++.||++++..+ .+.++||+|.+
T Consensus 39 ~~~-t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 39 KKG-TNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred Eec-cCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 455 789999999999987653 57999999999887 79999999999999865 67999999975
No 62
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=98.88 E-value=3.3e-09 Score=99.47 Aligned_cols=62 Identities=15% Similarity=0.334 Sum_probs=55.3
Q ss_pred CCCCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEec
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEI 63 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l 63 (744)
|++| +.||+|||+|.|.+.+. ...|.|+|+|.|.++ +++||++.||+.++...+.++.||||
T Consensus 59 v~~~-t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 59 IKRN-TTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred eeeC-CCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 3556 89999999999999873 457999999999887 78999999999999988999999998
No 63
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=98.88 E-value=4e-09 Score=98.53 Aligned_cols=62 Identities=16% Similarity=0.347 Sum_probs=55.1
Q ss_pred CCCCCCCCCccceeEEEec-cc---CCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEec
Q 004579 1 MLKKEQSNPRWYESFHIYC-AH---MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEI 63 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~-ah---~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l 63 (744)
|++| +.||+|||+|.|++ .+ ....|.|+|+|.|.++ +++||++.||+.++..++..+.||+|
T Consensus 55 v~~~-~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 55 VVRK-TRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred ccCC-CCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 4677 99999999999986 43 2468999999999887 79999999999999999999999997
No 64
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=98.86 E-value=4.8e-09 Score=97.87 Aligned_cols=63 Identities=25% Similarity=0.439 Sum_probs=56.2
Q ss_pred CCCCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecc
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEIL 64 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~ 64 (744)
++++ +.||+|||+|.|++.+. ...|.|.|+|.|.++ +++||++.||++++..|+..+.|++|.
T Consensus 57 v~~~-t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 57 VHRK-TLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred cCcC-CCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 3566 89999999999999873 468999999999887 799999999999998899999999984
No 65
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=98.86 E-value=3.9e-09 Score=98.32 Aligned_cols=64 Identities=19% Similarity=0.320 Sum_probs=58.0
Q ss_pred CCCCCCCCccceeEEEecccCCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCC
Q 004579 2 LKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDED 67 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~ 67 (744)
+++ +.||+|||+|.|++.+..+.|.|.|.|.+.++ +++||++.+++.+++.+ ..++||.+++++
T Consensus 41 ~~~-t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 41 ISN-TLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSLGSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred ECC-CcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence 456 89999999999999998899999999999987 67999999999999977 679999999755
No 66
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.82 E-value=9.2e-10 Score=74.79 Aligned_cols=27 Identities=63% Similarity=1.053 Sum_probs=18.8
Q ss_pred cccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCC
Q 004579 263 MFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGR 300 (744)
Q Consensus 263 ~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R 300 (744)
.++||||++|||++ +||+||+|||++|
T Consensus 2 ~~~~H~K~~vvD~~-----------~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 2 GGSHHQKFVVVDDR-----------VAFVGGANLCDGR 28 (28)
T ss_dssp TBEE---EEEETTT-----------EEEEE---SSHHH
T ss_pred CcceeeEEEEEcCC-----------EEEECceecCCCC
Confidence 57999999999999 9999999999764
No 67
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=98.81 E-value=7.3e-09 Score=96.71 Aligned_cols=63 Identities=27% Similarity=0.352 Sum_probs=56.1
Q ss_pred CCCCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecc
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEIL 64 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~ 64 (744)
|+++ +.||+|||+|.|++.+. ...|.|.|+|.|.++ +++||++.|+++++..++..+.||+|.
T Consensus 57 v~~~-t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 57 IHKK-TLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred eEcC-CCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 3567 89999999999998875 468999999999887 799999999999999788999999984
No 68
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=98.81 E-value=8.2e-09 Score=99.63 Aligned_cols=68 Identities=15% Similarity=0.253 Sum_probs=56.7
Q ss_pred CCCCCCCCCccceeEEEecc---------------c-CCceEEEEEEeCCCCC-CeeEEEEEeecccccCC-CccceEEe
Q 004579 1 MLKKEQSNPRWYESFHIYCA---------------H-MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGG-EEVDKWVE 62 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~a---------------h-~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g-~~v~~w~~ 62 (744)
|+++ +.||+|||+|.|++. + ....|.|.|+|.+.++ +++||++.||+.++..+ ...+.||+
T Consensus 41 v~~~-t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~ 119 (148)
T cd04010 41 VKKK-TNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYF 119 (148)
T ss_pred cEeC-CCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceee
Confidence 4567 899999999999995 2 1357999999999875 79999999999999977 78899999
Q ss_pred cccCCCC
Q 004579 63 ILDEDRN 69 (744)
Q Consensus 63 l~~~~~k 69 (744)
|.+...+
T Consensus 120 L~~~~~~ 126 (148)
T cd04010 120 LQPREEK 126 (148)
T ss_pred cCCcccc
Confidence 9765443
No 69
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=98.80 E-value=1e-08 Score=96.12 Aligned_cols=63 Identities=16% Similarity=0.262 Sum_probs=55.4
Q ss_pred CCCCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecc
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEIL 64 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~ 64 (744)
|+++ +.||+|||+|.|++... ...|.|+|+|.|.++ +++||++.||+.++-.++....||+|.
T Consensus 59 v~~~-t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 59 VKKK-TLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred cCcC-CCCCccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 4677 89999999999999752 468999999999887 789999999999998778889999983
No 70
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=98.80 E-value=2.9e-08 Score=93.17 Aligned_cols=82 Identities=16% Similarity=0.151 Sum_probs=65.8
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCCCCCCeeEEEEEeecccccCCCccceEEecccCC-CCCCCCCceEEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDED-RNPISSGSKIHV 79 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~-~k~~k~~~~IrV 79 (744)
|+++ +.||+|||+|.|++......|.|.|+|.+.+++++||++.+++.++. +....||+|.... ....+..|.|.+
T Consensus 41 v~~~-t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~d~~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~ 117 (126)
T cd04046 41 VQKD-TLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLCDEFLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISV 117 (126)
T ss_pred ccCC-CCCCcccceEEEEecCCCCEEEEEEEECCCCCCCceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEE
Confidence 4677 89999999999999988889999999999999999999999998864 4456889995321 123345688888
Q ss_pred EEEeec
Q 004579 80 KLQYFD 85 (744)
Q Consensus 80 ~lqf~p 85 (744)
.++..+
T Consensus 118 ~~~~~~ 123 (126)
T cd04046 118 KVTSSD 123 (126)
T ss_pred EEEEcc
Confidence 876654
No 71
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=98.79 E-value=2.3e-08 Score=93.46 Aligned_cols=62 Identities=27% Similarity=0.385 Sum_probs=54.4
Q ss_pred CCCCCCCCccceeEEEecccC-CceEEEEEEeCCCCC-CeeEEEEEeecccccC---CCccceEEecc
Q 004579 2 LKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLG---GEEVDKWVEIL 64 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~---g~~v~~w~~l~ 64 (744)
++| +.||+|||+|.|++.+. ...|.|+|+|.|..+ +++||++.|+++++.. |...+.||+|.
T Consensus 43 ~~~-t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~ 109 (126)
T cd04043 43 IYD-TLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD 109 (126)
T ss_pred ecC-CCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcC
Confidence 566 89999999999999985 578999999999886 7999999999998753 56789999995
No 72
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.78 E-value=7.7e-09 Score=100.10 Aligned_cols=61 Identities=16% Similarity=0.390 Sum_probs=49.4
Q ss_pred CCCCCCCCCccceeEEEecc--cCCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEec
Q 004579 1 MLKKEQSNPRWYESFHIYCA--HMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEI 63 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~a--h~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l 63 (744)
|++| +.||+|||+|.|++. +....|+|+|+|.|.++ +++||.+.||++++.... .++|+|+
T Consensus 52 v~~~-t~nPvWNE~f~f~v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~-~~~~lp~ 115 (151)
T cd04018 52 VKKN-SYNPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSG-DEGFLPT 115 (151)
T ss_pred eEcC-CCCCCcceEEEEEeeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCC-ccccCCc
Confidence 4678 899999999999965 45679999999999885 899999999999998533 4433333
No 73
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=98.77 E-value=2.1e-08 Score=95.51 Aligned_cols=76 Identities=20% Similarity=0.406 Sum_probs=61.9
Q ss_pred CCCCCCCCCccceeEEEecccC-CceEEEEEEeCCCCC-CeeEEEEEeecccccC-----CCccceEEecccCCCCCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLG-----GEEVDKWVEILDEDRNPISS 73 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~-----g~~v~~w~~l~~~~~k~~k~ 73 (744)
|++| +.||+|||+|.|.+.+. .+.|.|.|+|.|.++ +++||.+.||++++.. ...+.+|+++- ++ .
T Consensus 53 vi~~-t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~---~~---~ 125 (136)
T cd08375 53 VVSD-TLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLH---EV---P 125 (136)
T ss_pred ccCC-CCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEeccc---cc---c
Confidence 5778 99999999999999875 467999999999887 7999999999999985 34566788873 33 2
Q ss_pred CceEEEEEEe
Q 004579 74 GSKIHVKLQY 83 (744)
Q Consensus 74 ~~~IrV~lqf 83 (744)
.+.|++.+.+
T Consensus 126 ~g~i~l~~~~ 135 (136)
T cd08375 126 TGEVVVKLDL 135 (136)
T ss_pred ceeEEEEEEe
Confidence 3788888765
No 74
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=98.76 E-value=1.3e-08 Score=94.52 Aligned_cols=62 Identities=16% Similarity=0.372 Sum_probs=54.8
Q ss_pred CCCCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEec
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEI 63 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l 63 (744)
|++| +.||+|||+|.|++... ...|.|.|+|.|.++ +++||++.||+.++..+..++.||+|
T Consensus 58 v~~~-t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 58 VKKN-TTNPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred ccCC-CCCCcccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 3566 89999999999998763 468999999999877 79999999999999888889999997
No 75
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=98.76 E-value=1.4e-08 Score=95.59 Aligned_cols=62 Identities=13% Similarity=0.266 Sum_probs=54.0
Q ss_pred CCCCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeeccccc-C--CCccceEEec
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVL-G--GEEVDKWVEI 63 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~-~--g~~v~~w~~l 63 (744)
|+++ +.||+|||+|.|++.+. ...|.|+|+|.+.++ +++||++.||+.++. + ++.+..||+|
T Consensus 59 v~~~-t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 59 VKKG-TVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred cccC-CCCCccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 4566 89999999999998773 468999999999876 799999999999995 3 5789999998
No 76
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=98.74 E-value=1.7e-08 Score=94.46 Aligned_cols=62 Identities=16% Similarity=0.356 Sum_probs=54.7
Q ss_pred CCCCCCCCCccceeEEEecccC---CceEEEEEEeCCCC---CCeeEEEEEeecccccCCCccceEEec
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPI---GATLIGRAYVPVEEVLGGEEVDKWVEI 63 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~---~~~~iG~~~ip~~~~~~g~~v~~w~~l 63 (744)
|++| +.||+|||+|.|.+... ...|.|+|+|.+.+ .+++||++.|++.++..++..+.||+|
T Consensus 59 v~~~-~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 59 VKKD-NLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred cccC-CCCCEECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 4677 89999999999998653 47899999999975 479999999999999988999999998
No 77
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=98.74 E-value=2.1e-08 Score=96.51 Aligned_cols=65 Identities=12% Similarity=0.238 Sum_probs=56.1
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEE-eCCCCC-CeeEEEEEeecccccCCCccceEEecccC
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVK-DDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDE 66 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vk-d~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~ 66 (744)
|+++ +.||+|||+|.|++.-....|.|+|+ |.+.++ +++||++.||++++-.++.+..||+|.++
T Consensus 73 v~kk-tlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 73 IARK-TLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred ecCC-CCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 3566 99999999999999866678999999 566665 68999999999999878889999999854
No 78
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=98.74 E-value=1.4e-08 Score=98.46 Aligned_cols=57 Identities=18% Similarity=0.511 Sum_probs=51.3
Q ss_pred CCCCCCCCccceeEEEecccC-CceEEEEEEeCCCCCCeeEEEEEeecccccCCCccceEEec
Q 004579 2 LKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEI 63 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~v~~w~~l 63 (744)
+++ +.||+|||+|.|++.+. .+.|.|+|+|.| +++||++.||++++. +..++.||+|
T Consensus 96 ~~~-tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~-~~~~d~W~~L 153 (153)
T cd08676 96 KPQ-TLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLP-SCGLDSWFKL 153 (153)
T ss_pred ecC-CCCCccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhC-CCCCCCeEeC
Confidence 456 89999999999999985 578999999998 899999999999998 4568999987
No 79
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.74 E-value=6.8e-09 Score=99.85 Aligned_cols=58 Identities=22% Similarity=0.468 Sum_probs=53.3
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccce
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDK 59 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~ 59 (744)
|++| +.||+|||.|.|++.|+...|.++|.|+|.++ +|+||.|.||++.++++.....
T Consensus 44 ~v~~-n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~~~~~ 102 (168)
T KOG1030|consen 44 VVYK-NLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQKMDY 102 (168)
T ss_pred eecC-CCCCcccceEEEEecCCCceEEEEEEeCCCCCcccccceeeeccHHHHHHhhhhc
Confidence 4677 99999999999999999999999999999998 7999999999999998776654
No 80
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=98.74 E-value=4e-08 Score=90.43 Aligned_cols=75 Identities=20% Similarity=0.285 Sum_probs=59.4
Q ss_pred CCCccceeEEEeccc---CCceEEEEEEeCCCCCCeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEEEEEEe
Q 004579 7 SNPRWYESFHIYCAH---MASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQY 83 (744)
Q Consensus 7 ~~P~Wne~F~~~~ah---~~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV~lqf 83 (744)
.||+|||+|.|.+.+ ....|.|.|+|++..+ ..+|.+++++..+..|...+.||+|.+.+++. +..++|++.++|
T Consensus 40 ~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~-~~~~~g~v~l~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 117 (117)
T cd08383 40 LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD-RDIVIGKVALSKLDLGQGKDEWFPLTPVDPDS-EVQGSVRLRARY 117 (117)
T ss_pred CCCcccceEEEecCCccccEEEEEEEEEecccCC-CeeEEEEEEecCcCCCCcceeEEECccCCCCC-CcCceEEEEEEC
Confidence 799999999999998 4567889999988664 33566677777777788999999997655432 356899999876
No 81
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=98.71 E-value=3.5e-08 Score=92.18 Aligned_cols=63 Identities=21% Similarity=0.343 Sum_probs=53.6
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCCCCC---CeeEEEEEeecccccCC-CccceEEeccc
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG---ATLIGRAYVPVEEVLGG-EEVDKWVEILD 65 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~---~~~iG~~~ip~~~~~~g-~~v~~w~~l~~ 65 (744)
|++| +.||+|||+|.|++.+ .+.|.|.|+|.+.++ +++||.+.||+.++... .....||++..
T Consensus 39 v~~~-t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~ 105 (123)
T cd08382 39 VAKK-TLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRK 105 (123)
T ss_pred EEcC-CCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeec
Confidence 4567 8999999999999975 789999999999886 47999999999999844 34477999954
No 82
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=98.69 E-value=2.6e-08 Score=92.94 Aligned_cols=64 Identities=19% Similarity=0.367 Sum_probs=56.8
Q ss_pred CCCCCCCCccceeEEEecccC----CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEeccc
Q 004579 2 LKKEQSNPRWYESFHIYCAHM----ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILD 65 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~----~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~ 65 (744)
+++.+.||+|||+|.|.+.++ ...|.|.|+|.+.++ +++||++.||+.+++.+...+.|++|..
T Consensus 40 ~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 40 AKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred cCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 333378999999999999987 578999999999876 7999999999999998888999999964
No 83
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=98.68 E-value=3.9e-08 Score=91.65 Aligned_cols=61 Identities=21% Similarity=0.440 Sum_probs=51.0
Q ss_pred CCCCCCCCCccceeEEEeccc----CCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEec
Q 004579 1 MLKKEQSNPRWYESFHIYCAH----MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEI 63 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah----~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l 63 (744)
|++| +.||+|||+|.|++.+ ....|.|+|+|.|.++ +++||++.||+++... +..+.||+|
T Consensus 59 v~~~-t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L 124 (125)
T cd04031 59 TVKK-TLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADALL-DDEPHWYPL 124 (125)
T ss_pred ccCC-CCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEecccccc-cCCcceEEC
Confidence 4677 9999999999999765 3578999999999876 7999999999999432 334689998
No 84
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=98.67 E-value=5.3e-08 Score=89.47 Aligned_cols=68 Identities=24% Similarity=0.356 Sum_probs=59.4
Q ss_pred CCCCCCCCCccceeEEEecccC-CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRN 69 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k 69 (744)
+++| +.||+|||+|.|++.+. .+.+.|.|+|.+..+ +++||++.+++.++..+...+.|++|....|.
T Consensus 38 v~~~-~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~~ 107 (115)
T cd04040 38 TIKK-TLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGGG 107 (115)
T ss_pred eecC-CCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcCCCCc
Confidence 3566 89999999999999874 678999999999876 79999999999999999999999999754443
No 85
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=98.67 E-value=3.3e-08 Score=92.32 Aligned_cols=63 Identities=24% Similarity=0.378 Sum_probs=54.1
Q ss_pred CCCCCCCCCccceeEEEecccC----CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecc
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM----ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEIL 64 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~----~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~ 64 (744)
|++| +.||+|||+|.|++... ...|.|+|+|.|.++ +++||++.||+.++..++..+.|++|.
T Consensus 57 v~~~-t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 57 VKRK-NLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred eecC-CCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 4667 89999999999984221 246999999999886 799999999999999999999999985
No 86
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=98.67 E-value=1.6e-08 Score=96.08 Aligned_cols=68 Identities=25% Similarity=0.372 Sum_probs=58.3
Q ss_pred CCCCCCCCCccceeEEEeccc---CCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAH---MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPI 71 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah---~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~ 71 (744)
|++| +.||+|||+|.|++.. ....|.|+|+|.|.++ +++||++.|++.. .|+..+.|+++++..|+++
T Consensus 58 v~k~-t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~~i 129 (136)
T cd08404 58 VKKC-TLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRRQI 129 (136)
T ss_pred cccC-CCCCccCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCCee
Confidence 4667 9999999999999875 3456899999999887 7999999999998 5888999999987767754
No 87
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=98.66 E-value=1.6e-07 Score=101.72 Aligned_cols=159 Identities=18% Similarity=0.332 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCccc----ccccccc
Q 004579 146 CWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSV----SLLKKDG 221 (744)
Q Consensus 146 ~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~----~~~~~~g 221 (744)
-.++|++.|..|++.|||.-....|...-..+ . .-+.|+++|++||-|||+||+|+=....+. .++++
T Consensus 277 DL~ail~~i~~A~~fv~isVMdY~Ps~~y~k~-~-----~fw~iDdaiR~aa~RgV~vR~lvs~~~~~~~~m~~~L~S-- 348 (456)
T KOG3603|consen 277 DLEAILNTIDEAQKFVYISVMDYFPSTIYSKN-H-----RFWEIDDAIRRAAVRGVKVRLLVSCWKHSEPSMFRFLRS-- 348 (456)
T ss_pred hHHHHHHHHHHHhhheeeeehhccchheeecC-c-----chhhhhHHHHHHhhcceEEEEEEeccCCCCchHHHHHHH--
Confidence 46899999999999999998887774433322 3 245999999999999999999992221111 11110
Q ss_pred ccCCCcHHHHHHhcCCCcEEEEc--CCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCC
Q 004579 222 LMATHDEETEKFFQGTDVHCILC--PRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDG 299 (744)
Q Consensus 222 ~~~~~~~~~~~~l~~~gV~~~~~--~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~ 299 (744)
+ +.....+++..|+|+++ |+... ...+....+|.|++|-+. .||||.-|.+.+
T Consensus 349 L-----q~l~~~~~~~~iqvk~f~VP~~~~--------~~ip~~Rv~HnKymVTe~------------aayIGTSNws~d 403 (456)
T KOG3603|consen 349 L-----QDLSDPLENGSIQVKFFIVPQTNI--------EKIPFARVNHNKYMVTES------------AAYIGTSNWSGD 403 (456)
T ss_pred H-----HHhcCccccCceEEEEEEeCCCcc--------ccCchhhhccceeEEeec------------ceeeeccCCCcc
Confidence 0 11112234567777755 43321 134567889999999988 699999999998
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeChHHHHHHHHHHHHHHHhcC
Q 004579 300 RYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGG 367 (744)
Q Consensus 300 R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~~ 367 (744)
||-.. .|..+--.. .| -.|+++.+|...|+++|+..-.
T Consensus 404 Yf~~T---------------------aG~~ivv~q--~~-------~~~~~~~ql~~vFeRdW~S~Ys 441 (456)
T KOG3603|consen 404 YFTST---------------------AGTAIVVRQ--TP-------HKGTLVSQLKAVFERDWNSTYS 441 (456)
T ss_pred ceecc---------------------CceEEEEec--CC-------CCCcHHHHHHHHHhhccccccc
Confidence 87321 110000000 01 2578999999999999987543
No 88
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=98.66 E-value=6.5e-08 Score=90.89 Aligned_cols=75 Identities=21% Similarity=0.473 Sum_probs=59.0
Q ss_pred CCCCCCCCccceeEEEecccCCceEEEEEEeCCCC------------CCeeEEEEEeecccccCCCccceEEecccCCCC
Q 004579 2 LKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPI------------GATLIGRAYVPVEEVLGGEEVDKWVEILDEDRN 69 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~------------~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k 69 (744)
++| +.||+|||+|.|+|.++...|.|.|.|.|.. ++++||++.||+.++. ...+.||+|....++
T Consensus 40 v~~-t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~ 116 (127)
T cd04027 40 IPQ-NLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDK 116 (127)
T ss_pred ecC-CCCCccceEEEEEecCCCCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCC
Confidence 567 8999999999999998888999999999852 4799999999999874 335799999854433
Q ss_pred CCCCCceEEEE
Q 004579 70 PISSGSKIHVK 80 (744)
Q Consensus 70 ~~k~~~~IrV~ 80 (744)
.+..|.|++.
T Consensus 117 -~~~~G~i~~~ 126 (127)
T cd04027 117 -SAVSGAIRLH 126 (127)
T ss_pred -CcEeEEEEEE
Confidence 2245666553
No 89
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=98.65 E-value=6.8e-08 Score=90.56 Aligned_cols=77 Identities=23% Similarity=0.404 Sum_probs=59.1
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCCCCC-CeeEEEEEeecccccCC---Cc--cceEEecccCCCC-CCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGG---EE--VDKWVEILDEDRN-PISS 73 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g---~~--v~~w~~l~~~~~k-~~k~ 73 (744)
|+++ +.||+|||+|.|++. ..+.|.|.|+|.+.++ +++||++.|++.+++.+ .. +..|+++.... + -.+.
T Consensus 40 v~~~-t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 116 (125)
T cd04021 40 VSKK-TSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSEN-KGSSVK 116 (125)
T ss_pred eeCC-CCCCccccEEEEEeC-CCCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccC-CCccee
Confidence 3566 899999999999975 5679999999999886 79999999999999843 22 45699997543 2 1234
Q ss_pred CceEEEE
Q 004579 74 GSKIHVK 80 (744)
Q Consensus 74 ~~~IrV~ 80 (744)
.|.|.+.
T Consensus 117 ~G~~~~~ 123 (125)
T cd04021 117 VGELTVI 123 (125)
T ss_pred eeeEEEE
Confidence 5666654
No 90
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=98.65 E-value=4.6e-08 Score=92.18 Aligned_cols=64 Identities=25% Similarity=0.420 Sum_probs=55.9
Q ss_pred CCCCCCCCCccceeEEEecccC--CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccC
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM--ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDE 66 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~--~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~ 66 (744)
|++| +.||+|||+|.|++... ...|.|.|+|.+.++ +++||.+.+|++++... ..+.||+|.+.
T Consensus 56 v~~~-~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 56 TIKK-TLNPVWNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred eecC-CCCCCccceEEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 4567 89999999999998764 468999999999875 79999999999999855 78999999875
No 91
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=98.64 E-value=1.2e-07 Score=88.59 Aligned_cols=78 Identities=24% Similarity=0.473 Sum_probs=63.0
Q ss_pred CCCCCCCCccceeEEEecccCC-ceEEEEEEeCCCCCCeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEEEE
Q 004579 2 LKKEQSNPRWYESFHIYCAHMA-SNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVK 80 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~~-~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV~ 80 (744)
+++.+.||+|||+|.|.+.++. +.|.|.|+|.+..++++||.+.+|++++..|. +|++|.+..|++. ..+.|.+.
T Consensus 49 ~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~~g~---~~~~l~~~~~~~~-~~~~l~v~ 124 (128)
T cd00275 49 VKNNGFNPVWNETFEFDVTVPELAFLRFVVYDEDSGDDDFLGQACLPLDSLRQGY---RHVPLLDSKGEPL-ELSTLFVH 124 (128)
T ss_pred ecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCCCCCCcEeEEEEEEhHHhcCce---EEEEecCCCCCCC-cceeEEEE
Confidence 3442459999999999998754 67999999999888899999999999998775 7999998888743 45667666
Q ss_pred EEe
Q 004579 81 LQY 83 (744)
Q Consensus 81 lqf 83 (744)
+++
T Consensus 125 ~~~ 127 (128)
T cd00275 125 IDI 127 (128)
T ss_pred EEE
Confidence 553
No 92
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=98.63 E-value=4.6e-08 Score=90.36 Aligned_cols=62 Identities=13% Similarity=0.259 Sum_probs=52.9
Q ss_pred CCCCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEec
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEI 63 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l 63 (744)
|.++ +.||+|||+|.|.+++. ...|.|+|.|.|.++ +++||++.+|+.++..+...+-|-+|
T Consensus 53 v~rk-tlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 53 LKKL-ALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred eecC-CCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 3456 99999999999999883 467999999999998 79999999999998666667778654
No 93
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=98.63 E-value=5e-08 Score=91.41 Aligned_cols=61 Identities=20% Similarity=0.346 Sum_probs=53.4
Q ss_pred CCCCCCCCccceeEEEeccc---CCceEEEEEEeCCCCC-CeeEEEEEeeccccc-CCCccceEEec
Q 004579 2 LKKEQSNPRWYESFHIYCAH---MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVL-GGEEVDKWVEI 63 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah---~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~-~g~~v~~w~~l 63 (744)
.++ +.||+|||+|.|++++ ....|.|+|+|.|.++ +++||.+.|++.++- ++.....||+|
T Consensus 59 ~~~-t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 59 LED-QDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred cCC-CCCCccccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 445 8999999999999987 3578999999999887 799999999999994 66678999986
No 94
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=98.62 E-value=7.3e-08 Score=90.23 Aligned_cols=58 Identities=21% Similarity=0.357 Sum_probs=52.3
Q ss_pred CCCccceeEEEe-ccc---CCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecc
Q 004579 7 SNPRWYESFHIY-CAH---MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEIL 64 (744)
Q Consensus 7 ~~P~Wne~F~~~-~ah---~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~ 64 (744)
.||+|||+|.|+ +++ ....|.|+|+|.|.++ +++||++.||++++..++....||+|.
T Consensus 61 ~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 61 PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 899999999999 665 2467999999999887 799999999999999999999999984
No 95
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=98.61 E-value=7.3e-08 Score=91.90 Aligned_cols=64 Identities=17% Similarity=0.308 Sum_probs=56.9
Q ss_pred CCCCCCCCCccceeEEEecccC----------------CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEec
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM----------------ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEI 63 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~----------------~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l 63 (744)
|++| +.||+|||+|.|++.+. ...|.|.|+|.+.++ +++||++.||++++..+...+.||+|
T Consensus 40 vv~~-t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L 118 (137)
T cd08675 40 VKKK-TNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFL 118 (137)
T ss_pred eeeC-CCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEec
Confidence 4667 89999999999999885 468999999999885 89999999999999987789999999
Q ss_pred cc
Q 004579 64 LD 65 (744)
Q Consensus 64 ~~ 65 (744)
..
T Consensus 119 ~~ 120 (137)
T cd08675 119 QP 120 (137)
T ss_pred CC
Confidence 64
No 96
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=98.61 E-value=4.6e-08 Score=89.37 Aligned_cols=56 Identities=18% Similarity=0.259 Sum_probs=48.3
Q ss_pred CCCCCCCCCccceeEEEecccCC--ceEEEEEEeCCCCC-CeeEEEEEeecccccCCCcc
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMA--SNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEV 57 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~--~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v 57 (744)
|+++ +.||+|||+|.|++.+.. ..|.|.|+|.|.++ +++||++.|++++|+.+...
T Consensus 43 v~~~-t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~~~ 101 (108)
T cd04039 43 WRRH-TLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAAPQ 101 (108)
T ss_pred eecC-CCCCcccceEEEEEeCccCCCEEEEEEEECCCCCCCcceEEEEEEHHHHHhhCCC
Confidence 4677 899999999999987643 47999999999887 79999999999999977643
No 97
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=98.61 E-value=6.9e-08 Score=89.65 Aligned_cols=67 Identities=15% Similarity=0.278 Sum_probs=57.4
Q ss_pred CCCCCCCCCccceeEEEecc-cCCceEEEEEEeCCC----CC-CeeEEEEEeecccccCCCccceEEecccCCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCA-HMASNIIFTVKDDNP----IG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNP 70 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~a-h~~~~l~~~vkd~d~----~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~ 70 (744)
|++| +.||+|||+|.|.+. ...+.|.|.|+|.|. ++ +++||++.+|+.+++.++....|++|.. ||.
T Consensus 45 vi~~-t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~--~~~ 117 (120)
T cd04048 45 VIKN-NLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPLKG--GKG 117 (120)
T ss_pred EeCC-CCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEccC--CCc
Confidence 4678 999999999999854 356789999999996 54 7999999999999998888889999954 553
No 98
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=98.60 E-value=1.4e-07 Score=89.70 Aligned_cols=80 Identities=14% Similarity=0.363 Sum_probs=60.5
Q ss_pred CCCCCCCCCccceeEEEecccC----------CceEEEEEEeCCCCC-CeeEEEEEe-ecccccC---CCccceEEeccc
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM----------ASNIIFTVKDDNPIG-ATLIGRAYV-PVEEVLG---GEEVDKWVEILD 65 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~----------~~~l~~~vkd~d~~~-~~~iG~~~i-p~~~~~~---g~~v~~w~~l~~ 65 (744)
|++| +.||+|||+|.|++.+. ...|.|.|+|.|..+ +++||++.| |...+.. +.....||+|.
T Consensus 39 v~~~-t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~- 116 (135)
T cd04017 39 VIKE-TLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIY- 116 (135)
T ss_pred eEcC-CCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEee-
Confidence 4667 99999999999986542 256999999999887 689999997 6655542 57899999996
Q ss_pred CCCCCCCCCceEEEEEEeec
Q 004579 66 EDRNPISSGSKIHVKLQYFD 85 (744)
Q Consensus 66 ~~~k~~k~~~~IrV~lqf~p 85 (744)
+.|+ ..++|.+.+...+
T Consensus 117 ~~~~---~~Geil~~~~~~~ 133 (135)
T cd04017 117 KGGQ---SAGELLAAFELIE 133 (135)
T ss_pred cCCC---chhheeEEeEEEE
Confidence 3443 3577777665544
No 99
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=98.60 E-value=2.3e-08 Score=94.17 Aligned_cols=68 Identities=31% Similarity=0.611 Sum_probs=59.3
Q ss_pred CCCCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPI 71 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~ 71 (744)
|++| +.||+|||+|.|.+... ...|.|.|+|.+.++ +++||.+.|++++ .|+.++.|++|++..+++.
T Consensus 57 ~~~~-~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~~ 128 (134)
T cd00276 57 VKKG-TLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKPI 128 (134)
T ss_pred ceec-CCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCce
Confidence 3566 89999999999999875 478999999999865 7999999999999 7889999999998767754
No 100
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=98.56 E-value=3.5e-08 Score=93.47 Aligned_cols=68 Identities=28% Similarity=0.476 Sum_probs=57.0
Q ss_pred CCCCCCCCCccceeEEEecccC-C--ceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM-A--SNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPI 71 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~-~--~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~ 71 (744)
|++| +.||+|||+|.|.+... . ..|.|+|+|.|.+| +++||++.||+. ..|+..+.|++++...|++.
T Consensus 57 v~~~-t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~~~~~ 128 (134)
T cd08403 57 VKKN-TLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANPRKPI 128 (134)
T ss_pred cccC-CCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCCCCee
Confidence 4566 89999999999998653 2 35999999999988 899999999987 45777899999998777754
No 101
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=98.56 E-value=4.8e-08 Score=92.78 Aligned_cols=68 Identities=29% Similarity=0.583 Sum_probs=57.1
Q ss_pred CCCCCCCCCccceeEEEeccc--C-CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAH--M-ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPI 71 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah--~-~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~ 71 (744)
|++| +.||+|||+|.|++.. . ...|.|+|+|.|.++ +++||++.||+.+. |+..+.|++++...++|.
T Consensus 58 v~~~-t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~~~~ 129 (136)
T cd08405 58 IKKR-TLNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPRQPV 129 (136)
T ss_pred ceeC-CCCCcccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCCCch
Confidence 4567 8999999999998653 2 357999999999887 79999999999986 888899999987666654
No 102
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=98.55 E-value=5.3e-08 Score=66.66 Aligned_cols=26 Identities=58% Similarity=0.784 Sum_probs=24.7
Q ss_pred eEeeeeEEEEeceEEEEcCccCCccc
Q 004579 592 IYVHAKMMIVDDEYIIIGSANINQRS 617 (744)
Q Consensus 592 iyvHSK~mIVDD~~~iIGSANin~RS 617 (744)
...|+|+||||+++++|||+||+.||
T Consensus 3 ~~~H~K~~v~D~~~~~iGs~N~~~~~ 28 (28)
T smart00155 3 GVLHTKLMIVDDEIAYIGSANLDGRS 28 (28)
T ss_pred CcEEeEEEEEcCCEEEEeCccCCCCC
Confidence 48999999999999999999999987
No 103
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=98.55 E-value=3.7e-08 Score=93.57 Aligned_cols=67 Identities=31% Similarity=0.537 Sum_probs=56.6
Q ss_pred CCCCCCCCccceeEEEecccCC---ceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCC
Q 004579 2 LKKEQSNPRWYESFHIYCAHMA---SNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPI 71 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~~---~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~ 71 (744)
++| +.||+|||+|.|++.... ..|.|.|+|.|.++ +++||.+.||+.. .|+.++.|++++...+++.
T Consensus 59 ~~~-t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~~~~~~~ 129 (136)
T cd08402 59 KKR-TLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA--TGAELRHWSDMLASPRRPI 129 (136)
T ss_pred eeC-CCCCcccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCcc--CChHHHHHHHHHhCCCCee
Confidence 456 899999999999987642 47999999999887 6999999999975 5888999999997665654
No 104
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=98.53 E-value=1.5e-07 Score=87.61 Aligned_cols=63 Identities=17% Similarity=0.320 Sum_probs=55.1
Q ss_pred CCCCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecc
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEIL 64 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~ 64 (744)
+++| +.||+|||+|.|.+... ...|.|.|+|.+..+ +++||++.|+++++......+.|++|.
T Consensus 56 v~~~-~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 56 VKRK-TQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred eEcC-CCCCccceEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 3567 99999999999998764 357999999999887 799999999999999888889999984
No 105
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=98.53 E-value=5.5e-08 Score=91.90 Aligned_cols=68 Identities=25% Similarity=0.391 Sum_probs=57.1
Q ss_pred CCCCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPI 71 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~ 71 (744)
|+++ +.||+|||+|.|.+.+. ...|.|.|+|.|.++ +++||.+.|++.. .|+..+.||++++..+++.
T Consensus 56 v~~~-t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~~~ 127 (133)
T cd08384 56 VKKK-TLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDKKI 127 (133)
T ss_pred eEec-cCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCCCCh
Confidence 3556 89999999999998874 357999999999876 7999999999985 6788899999987655543
No 106
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=98.52 E-value=9.9e-08 Score=87.45 Aligned_cols=60 Identities=18% Similarity=0.440 Sum_probs=50.6
Q ss_pred CCCCCCCCCccceeEEEecccC----CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecc
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM----ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEIL 64 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~----~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~ 64 (744)
|+++ +.||+|||+|.|.+... ...|.|+|+|.|.++ +++||++.||+.++. --.+|+++-
T Consensus 43 v~~~-t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~---~~~~~~~~~ 107 (111)
T cd04041 43 IIRK-DLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELI---EDRNWMGRR 107 (111)
T ss_pred eECC-CCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHh---cCCCCCccc
Confidence 4567 89999999999998763 468999999999887 799999999999998 235688873
No 107
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.52 E-value=1.2e-07 Score=120.74 Aligned_cols=80 Identities=15% Similarity=0.348 Sum_probs=68.1
Q ss_pred CCCCCCCCCccceeEEEecccCC--ceEEEEEEeCCCCCCeeEEEEEeecccccCCCccceEEecccCCCCCCCCCce--
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMA--SNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSK-- 76 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~--~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~-- 76 (744)
||++ +.||+|||.|.|.+.++. +.|+|.|+|+|.+|++.||.+.|++.+|..+..+++||+|.+ +|++ .++
T Consensus 2017 vvk~-~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L~~-~~~k---~G~~~ 2091 (2102)
T PLN03200 2017 VVSH-SSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLNP-ESNK---DGSSR 2091 (2102)
T ss_pred ccCC-CCCCCcccceeeeecCCCCCCceEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeeecCc-cccc---CCCcc
Confidence 5778 999999999999999976 779999999999999999999999999999999999999974 3332 234
Q ss_pred -EEEEEEeec
Q 004579 77 -IHVKLQYFD 85 (744)
Q Consensus 77 -IrV~lqf~p 85 (744)
|.+.+++++
T Consensus 2092 ~~~~e~~w~~ 2101 (2102)
T PLN03200 2092 TLEIEFQWSN 2101 (2102)
T ss_pred eEEEEEEecC
Confidence 777776653
No 108
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=98.46 E-value=9.5e-07 Score=99.97 Aligned_cols=123 Identities=17% Similarity=0.273 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHhcccEEEEeeccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEecCCCC--C
Q 004579 434 RSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPE--G 511 (744)
Q Consensus 434 ~sI~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP~~p~--g 511 (744)
.....+++++|++|+++||||+-||-. |+ ++.++..+|.+|+++.++|+|+|++-.+=. |
T Consensus 34 ~~f~~~Ll~~I~~Ak~~I~l~~y~~~~------D~------------~g~~il~AL~~a~~~~~gv~VrvLvD~~Ra~Rg 95 (451)
T PRK09428 34 ADFRETLLEKIASAKKRIYIVALYLED------DE------------AGREILDALYQAKQQNPELDIKVLVDWHRAQRG 95 (451)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEEecC------Cc------------hHHHHHHHHHHHHhcCCCcEEEEEEEccccccc
Confidence 367999999999999999999999963 22 256888899888776667999999985310 0
Q ss_pred CCCCchhHHHHHHHHhhhhhhHHHHHHHHHHcC--CCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcc
Q 004579 512 FPESGSVQAILDWQRRTMDMMYKDVVQALRAKG--IMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARR 589 (744)
Q Consensus 512 ~~~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~G--v~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~ 589 (744)
...+.+ .. .-..++..|.+++ +++ .+|++ |. . .+.
T Consensus 96 ~iG~~~---------~~---~~~~~~~~l~~~~~gv~v------~~f~~------------p~-~------------~~e 132 (451)
T PRK09428 96 LIGAAA---------SN---TNADWYCEMAQEYPGVDI------PVYGV------------PV-N------------TRE 132 (451)
T ss_pred ccccCC---------CC---cCHHHHHHHHHhCCCceE------EEcCC------------cc-c------------cch
Confidence 000000 00 0122466777764 554 34421 10 0 001
Q ss_pred eeeEeeeeEEEEeceEEEEcCccCCcccc
Q 004579 590 FMIYVHAKMMIVDDEYIIIGSANINQRSM 618 (744)
Q Consensus 590 ~~iyvHSK~mIVDD~~~iIGSANin~RS~ 618 (744)
.....|-|++||||+.++.| ||||+--+
T Consensus 133 ~~gr~HrKi~IiD~~v~ysG-aNi~d~Yl 160 (451)
T PRK09428 133 ALGVLHLKGFIIDDTVLYSG-ASLNNVYL 160 (451)
T ss_pred hhhhceeeEEEECCCEEEec-ccccHHHh
Confidence 12358999999999999999 89999555
No 109
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=98.44 E-value=2.7e-07 Score=86.95 Aligned_cols=63 Identities=24% Similarity=0.314 Sum_probs=51.5
Q ss_pred CCCCCCCCCccceeEEEe-ccc---CCceEEEEEEeCCCCC-CeeEEEEEeeccccc--CCCccceEEecc
Q 004579 1 MLKKEQSNPRWYESFHIY-CAH---MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVL--GGEEVDKWVEIL 64 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~-~ah---~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~--~g~~v~~w~~l~ 64 (744)
|++| +.||+|||+|.|+ +.. ....|.|+|+|.|.++ +++||++.||+.++- ++..+.-|+++.
T Consensus 58 v~~~-t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 58 VLRK-TRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EEcC-CCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 4667 9999999999995 332 2346999999999776 799999999999995 346699999984
No 110
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=98.43 E-value=1.2e-06 Score=99.26 Aligned_cols=135 Identities=21% Similarity=0.259 Sum_probs=98.4
Q ss_pred HHHHHHHHHhcccEEEEEE-eccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCcc--cccccccccc
Q 004579 147 WEDIFDAITNARHMIYITG-WSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTS--VSLLKKDGLM 223 (744)
Q Consensus 147 ~~~l~~aI~~Ak~~I~I~~-w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s--~~~~~~~g~~ 223 (744)
-..++.+|.+|+++|+|+. |.+ .+..+.++|+.++++||+|+|++ ++.+. ..... .
T Consensus 272 ~~~~~~~i~~A~~~i~i~~pYf~----------------~~~~~~~al~~a~~~Gv~V~ii~-~~~~~~d~~~~~-~--- 330 (438)
T COG1502 272 NRLLLKAINSARESILIATPYFV----------------PDRELLAALKAAARRGVDVRIII-PSLGANDSAIVH-A--- 330 (438)
T ss_pred HHHHHHHHHhhceEEEEEcCCcC----------------CCHHHHHHHHHHHhcCCEEEEEe-CCCCCCChHHHH-H---
Confidence 3689999999999999997 543 24688899999999999999998 74322 11110 0
Q ss_pred CCCcHHHHHHhcCCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCC
Q 004579 224 ATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDT 303 (744)
Q Consensus 224 ~~~~~~~~~~l~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt 303 (744)
......+.+...|+++..++. ....|.|++|||++ +++||+.|+...-+..
T Consensus 331 --~~~~~~~~l~~~gv~i~~~~~----------------g~~lH~K~~iiD~~-----------~~~vGS~N~~~rS~~l 381 (438)
T COG1502 331 --AYRAYLKELLEAGVKVYEYPG----------------GAFLHSKVMIIDDR-----------TVLVGSANLDPRSLRL 381 (438)
T ss_pred --HHHHHHHHHHHhCCEEEEecC----------------CCcceeeEEEEcCC-----------EEEEeCCcCCHhHHHH
Confidence 012345667778888755431 04799999999999 9999999998753310
Q ss_pred CCccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeCh-HHHHHHHHHHHHHHHhc
Q 004579 304 PFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGP-IAWDVLFNFEQRWRKQG 366 (744)
Q Consensus 304 ~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gp-aa~dl~~~F~~rW~~~~ 366 (744)
| -.+.+.|+.| .+.++...|...|....
T Consensus 382 ---------------N--------------------~E~~~~i~d~~~~~~~~~~~~~~~~~s~ 410 (438)
T COG1502 382 ---------------N--------------------FEVGLVIEDPELALKLRREFEADLARSK 410 (438)
T ss_pred ---------------h--------------------hhheeEEeCHHHHHHHHHHHHHHHHHHh
Confidence 0 1557888888 89999999997776543
No 111
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=98.40 E-value=3.9e-07 Score=89.40 Aligned_cols=63 Identities=17% Similarity=0.309 Sum_probs=52.7
Q ss_pred CCCCCCCCCccceeEEEecccC----CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecc
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM----ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEIL 64 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~----~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~ 64 (744)
|++| +.||+|||+|.|++... ...|.|+|+|.|.++ +++||++.|++.++..-...+.||++.
T Consensus 70 vi~~-t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 70 VVKK-SVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred ccCC-CCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCC
Confidence 5677 89999999999986432 247999999999887 899999999999997544578888874
No 112
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=98.39 E-value=2.4e-07 Score=88.20 Aligned_cols=68 Identities=18% Similarity=0.363 Sum_probs=56.7
Q ss_pred CCCCCCCCCccceeEEEeccc---CCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAH---MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPI 71 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah---~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~ 71 (744)
|+++ +.||+|||+|.|.+.+ ....|.|+|+|.|.++ +++||++.|+.. ..|+..+.|.+++..-+++.
T Consensus 58 v~k~-t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~--~~g~~~~hW~~ml~~~~~~v 129 (136)
T cd08406 58 VKRD-DTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPA--ASGMGLSHWNQMLASLRKPV 129 (136)
T ss_pred cccC-CCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCC--CCChhHHHHHHHHHCCCCee
Confidence 4566 8999999999999986 3577999999999776 799999999876 46888899999987656543
No 113
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=98.38 E-value=5e-07 Score=84.96 Aligned_cols=52 Identities=23% Similarity=0.350 Sum_probs=44.9
Q ss_pred CCCCCCCCCccceeEEEeccc--CCceEEEEEEeCCCCC-CeeEEEEEeecccccC
Q 004579 1 MLKKEQSNPRWYESFHIYCAH--MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLG 53 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah--~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~ 53 (744)
|++| +.||+|||+|.|+..+ ..+.|.|+|+|.|.++ +++||++.|+++....
T Consensus 65 vi~~-t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 65 VIWN-NNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred eecC-CCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEecCCce
Confidence 4677 8999999999998543 4789999999999985 8999999999997663
No 114
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=98.38 E-value=2.1e-07 Score=88.78 Aligned_cols=67 Identities=28% Similarity=0.492 Sum_probs=57.0
Q ss_pred CCCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCC
Q 004579 2 LKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPI 71 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~ 71 (744)
+++ +.||+|||+|.|.+++. ...|.|+|+|.|.++ +++||++.|++.. +|+..+-|.+++..-+++.
T Consensus 61 ~k~-t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~p~~~v 131 (138)
T cd08407 61 AKH-KINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDNPRRQI 131 (138)
T ss_pred eeC-CCCCccccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhCCCCch
Confidence 456 99999999999999984 466999999999988 7999999999985 7888888999886556554
No 115
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=98.37 E-value=4.1e-07 Score=87.55 Aligned_cols=56 Identities=20% Similarity=0.409 Sum_probs=50.2
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCcc
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEV 57 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v 57 (744)
|++| +.||+|||+|.|.+.++...|.|.|+|.|.++ +++||.+.+++.++++....
T Consensus 39 vvk~-t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~~~ 95 (145)
T cd04038 39 VIKK-NLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAKL 95 (145)
T ss_pred eEcC-CCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhhhh
Confidence 4567 89999999999999999999999999999887 79999999999999865544
No 116
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=98.37 E-value=5.5e-07 Score=85.30 Aligned_cols=53 Identities=30% Similarity=0.509 Sum_probs=46.6
Q ss_pred CCCCCCCCCccceeEEEeccc-----CCceEEEEEEeCCCCC-CeeEEEEEeecccccCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAH-----MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGG 54 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah-----~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g 54 (744)
|++| +.||+|||+|.|++.. ....|.|.|+|.|.++ +++||++.||+.++...
T Consensus 61 v~~~-t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 61 VKKK-TLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred cCcC-CCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 4677 8999999999999876 2468999999999888 89999999999999843
No 117
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=98.36 E-value=1.3e-06 Score=83.24 Aligned_cols=62 Identities=19% Similarity=0.341 Sum_probs=51.8
Q ss_pred CCCCCCCCCcc-ceeEEEecccCCceEEEEEEeCCCCC----CeeEEEEEeecccccCCC---ccceEEecc
Q 004579 1 MLKKEQSNPRW-YESFHIYCAHMASNIIFTVKDDNPIG----ATLIGRAYVPVEEVLGGE---EVDKWVEIL 64 (744)
Q Consensus 1 vi~n~~~~P~W-ne~F~~~~ah~~~~l~~~vkd~d~~~----~~~iG~~~ip~~~~~~g~---~v~~w~~l~ 64 (744)
|++| +.||+| ||+|.|.+. ....|+|.|+|.+..+ +++||++.||+.+++.++ ....||++.
T Consensus 51 v~~~-tlnP~W~nE~f~f~v~-~~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~ 120 (137)
T cd08691 51 IVEN-TINPVWHREQFVFVGL-PTDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLG 120 (137)
T ss_pred eEcC-CCCCceEceEEEEEcC-CCCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECC
Confidence 4567 899999 999999985 4578999999987543 699999999999999653 467799985
No 118
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=98.33 E-value=3.8e-07 Score=86.97 Aligned_cols=68 Identities=18% Similarity=0.421 Sum_probs=56.9
Q ss_pred CCCCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRN 69 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k 69 (744)
|+++ +.||+|||+|.|.+.+. ...|.|+|+|.+..+ +++||++.|+.....+|+.++-|.+++..-++
T Consensus 57 v~~~-~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~ 128 (137)
T cd08409 57 VVDG-AASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKE 128 (137)
T ss_pred cEeC-CCCCcccceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCC
Confidence 3456 89999999999999752 357999999999766 79999999998888889999999999864344
No 119
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=98.26 E-value=5.1e-07 Score=85.81 Aligned_cols=69 Identities=23% Similarity=0.452 Sum_probs=54.3
Q ss_pred CCCCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPI 71 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~ 71 (744)
|++| +.||+|||+|.|.+... ...|.|+|+|.|..+ +++||++.|....+ .++..+.|+.+++..++++
T Consensus 57 v~~~-t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~-~~~~~~~W~~l~~~~~~~~ 129 (135)
T cd08410 57 CMRG-TIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSS-GPSETNHWRRMLNSQRTAV 129 (135)
T ss_pred cccC-CCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccC-CchHHHHHHHHHhCCCCEe
Confidence 4677 99999999999998652 235999999999776 89999999765333 2446799999998777654
No 120
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.22 E-value=5.2e-07 Score=61.41 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=18.3
Q ss_pred eEeeeeEEEEeceEEEEcCccCCccc
Q 004579 592 IYVHAKMMIVDDEYIIIGSANINQRS 617 (744)
Q Consensus 592 iyvHSK~mIVDD~~~iIGSANin~RS 617 (744)
...|+|++||||+++.|||+||+.|+
T Consensus 3 ~~~H~K~~vvD~~~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 3 GSHHQKFVVVDDRVAFVGGANLCDGR 28 (28)
T ss_dssp BEE---EEEETTTEEEEE---SSHHH
T ss_pred cceeeEEEEEcCCEEEECceecCCCC
Confidence 47999999999999999999999875
No 121
>PLN02223 phosphoinositide phospholipase C
Probab=98.21 E-value=2.8e-06 Score=96.28 Aligned_cols=76 Identities=24% Similarity=0.349 Sum_probs=63.6
Q ss_pred CCCCCCCCCccceeEEEecccC-CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIH 78 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~Ir 78 (744)
|.+| +.||+|||+|.|++.-+ .+-|.|.|.|.|..+ +++||.+.|||+.+..|- ++++|.+.+|++++. .+
T Consensus 457 v~nN-g~nPvWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~---~~ 529 (537)
T PLN02223 457 VKNN-EWKPTWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSS---TM 529 (537)
T ss_pred eCCC-CcCceecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCC---ce
Confidence 3456 99999999999998765 467899999999865 899999999999999997 788999999998743 34
Q ss_pred EEEEe
Q 004579 79 VKLQY 83 (744)
Q Consensus 79 V~lqf 83 (744)
+.++|
T Consensus 530 Ll~~f 534 (537)
T PLN02223 530 LLTRF 534 (537)
T ss_pred EEEEE
Confidence 45554
No 122
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=98.21 E-value=2.3e-06 Score=79.67 Aligned_cols=61 Identities=16% Similarity=0.389 Sum_probs=49.8
Q ss_pred CCCCCCCCCccceeEEEe-c--ccC-CceEEEEEEeCCCCCCeeEEEEEeecccccCCCccceEEe
Q 004579 1 MLKKEQSNPRWYESFHIY-C--AHM-ASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVE 62 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~-~--ah~-~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~v~~w~~ 62 (744)
|++| +.||+|||+|.|. + ++. ...|.|+|+|.+.+++++||.+.|++.++..++.-+-|+.
T Consensus 58 v~~~-~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 58 TVHK-TRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred eecC-CCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeecc
Confidence 3566 8999999999996 3 232 4689999999997788999999999999997776665554
No 123
>PLN02952 phosphoinositide phospholipase C
Probab=98.20 E-value=3.8e-06 Score=97.05 Aligned_cols=77 Identities=16% Similarity=0.338 Sum_probs=64.3
Q ss_pred CCCCCCCCCccceeEEEecccC-CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIH 78 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~Ir 78 (744)
||+| +.||+|||+|.|++.-+ .+-|.|.|+|.|..+ +++||.+.||+..|..|- +|++|.+.+|+++. ..+
T Consensus 519 vi~n-N~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l~---~a~ 591 (599)
T PLN02952 519 IIED-NWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKLK---NVR 591 (599)
T ss_pred eccC-CCCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCCC---CEE
Confidence 4677 69999999999987765 467899999999876 799999999999999998 59999999998773 345
Q ss_pred EEEEee
Q 004579 79 VKLQYF 84 (744)
Q Consensus 79 V~lqf~ 84 (744)
+.++|.
T Consensus 592 Llv~f~ 597 (599)
T PLN02952 592 LLMRFI 597 (599)
T ss_pred EEEEEE
Confidence 666553
No 124
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=98.18 E-value=2.3e-06 Score=78.02 Aligned_cols=53 Identities=28% Similarity=0.455 Sum_probs=45.7
Q ss_pred CCCCCCCCCccceeEEEecccC-----CceEEEEEEeCCCCC-CeeEEEEEeecccccCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM-----ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGE 55 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~-----~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~ 55 (744)
|++| +.||+|| +|.|++.+. ...|.|.|+|.|.+| +++||++.++++++..++
T Consensus 44 vi~~-t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~~~~ 102 (110)
T cd04047 44 VIKN-TLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELLKSS 102 (110)
T ss_pred Eecc-CCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHhcCC
Confidence 4677 8999999 799997653 578999999999987 799999999999998544
No 125
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.16 E-value=3e-06 Score=79.32 Aligned_cols=50 Identities=22% Similarity=0.363 Sum_probs=44.6
Q ss_pred CCCCCCCCccceeEEEecccC-CceEEEEEEeCCCCC-CeeEEEEEeeccccc
Q 004579 2 LKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVL 52 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~ 52 (744)
++| +.||+|||+|.|++..+ .+.|.|+|+|.|.++ +++||++.|++++.+
T Consensus 41 v~~-t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 41 IPN-TLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDLIGETVIDLEDRF 92 (124)
T ss_pred EEC-CCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCceeEEEEEeecccc
Confidence 566 89999999999998765 578999999999886 799999999999886
No 126
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=98.13 E-value=3.7e-06 Score=77.59 Aligned_cols=48 Identities=15% Similarity=0.432 Sum_probs=40.8
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeC-------CCCC-CeeEEEEEeeccc
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDD-------NPIG-ATLIGRAYVPVEE 50 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~-------d~~~-~~~iG~~~ip~~~ 50 (744)
+|++ +.||+|||+|.|++. ....|.|+|.|. |..+ +++||+++|.++.
T Consensus 37 ~i~~-TlnPvWnE~F~i~l~-~s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 37 VCRD-TTEPNWNEEFEIELE-GSQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred eecC-CCCCccceEEEEEeC-CCCEEEEEEEEcccccccccccCcccEEEEEEEEECH
Confidence 4667 999999999999997 477999999997 4555 7999999998853
No 127
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=98.07 E-value=7.4e-06 Score=71.02 Aligned_cols=61 Identities=25% Similarity=0.569 Sum_probs=54.6
Q ss_pred CCCCCCCCccceeEEEeccc-CCceEEEEEEeCCCCC-CeeEEEEEeeccccc-CCCccceEEec
Q 004579 2 LKKEQSNPRWYESFHIYCAH-MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVL-GGEEVDKWVEI 63 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah-~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~-~g~~v~~w~~l 63 (744)
+.+ +.||.|||+|.|++.. ....|.|.|.|.+..+ ..+||.+.+++.++. .+...+.|++|
T Consensus 39 ~~~-~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 39 VKN-TLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred eCC-CCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 345 7899999999999998 7789999999999887 799999999999998 78888889875
No 128
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=98.06 E-value=5.8e-06 Score=72.21 Aligned_cols=55 Identities=25% Similarity=0.508 Sum_probs=48.4
Q ss_pred CCCCCCCCccceeEEEecccC-CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCcc
Q 004579 2 LKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEV 57 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v 57 (744)
+.+ +.||.|||.|.|++.+. .+.|.|.|+|.+..+ +.+||.+.||+.++..|..-
T Consensus 42 ~~~-~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~~~ 98 (101)
T smart00239 42 VKN-TLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRH 98 (101)
T ss_pred ecC-CCCCcccceEEEEecCcccCEEEEEEEecCCccCCceeEEEEEEHHHcccCccc
Confidence 345 66999999999999998 899999999999876 89999999999999876644
No 129
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=98.05 E-value=2.9e-06 Score=81.01 Aligned_cols=66 Identities=21% Similarity=0.450 Sum_probs=52.9
Q ss_pred CCCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccCC-CccceEEecccCCCCC
Q 004579 2 LKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGG-EEVDKWVEILDEDRNP 70 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g-~~v~~w~~l~~~~~k~ 70 (744)
.++ +.||+|||+|.|++.+. ...|.|+|+|.|.++ +++||++.|+... .| +..+.|+.++...+++
T Consensus 60 ~~~-t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~--~~~~~~~hW~~~l~~~~~~ 130 (138)
T cd08408 60 RRG-QPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNS--SGEEEEEHWNEMKESKGQQ 130 (138)
T ss_pred ecC-CCCCcEeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcC--CCchHHHHHHHHHhCCCCE
Confidence 445 89999999999999873 368999999999776 7999999999874 34 3567898888655554
No 130
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=1.2e-05 Score=90.63 Aligned_cols=87 Identities=17% Similarity=0.248 Sum_probs=72.9
Q ss_pred CCCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceE
Q 004579 2 LKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKI 77 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~I 77 (744)
.++ +.||+|||+|.|++++. ...|.|+|.|.|.++ .++||++.||+..+......+.|.++........+.+++|
T Consensus 209 ~r~-tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel 287 (421)
T KOG1028|consen 209 HRK-TLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGEL 287 (421)
T ss_pred eec-CcCCccccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceE
Confidence 345 89999999999999984 689999999999998 7999999999999987776999999987533334344799
Q ss_pred EEEEEeeccccc
Q 004579 78 HVKLQYFDVTKD 89 (744)
Q Consensus 78 rV~lqf~p~~~~ 89 (744)
-+.++|.|....
T Consensus 288 ~~sL~Y~p~~g~ 299 (421)
T KOG1028|consen 288 LLSLCYLPTAGR 299 (421)
T ss_pred EEEEEeecCCCe
Confidence 999999988433
No 131
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=98.01 E-value=4.3e-06 Score=79.18 Aligned_cols=69 Identities=10% Similarity=0.403 Sum_probs=52.2
Q ss_pred CCCCCC-CCCccceeEEEecccCC--ceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCC
Q 004579 1 MLKKEQ-SNPRWYESFHIYCAHMA--SNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPI 71 (744)
Q Consensus 1 vi~n~~-~~P~Wne~F~~~~ah~~--~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~ 71 (744)
|++| + .||+|||+|.|.+++.. ..+.+.|.|.|.++ +++||++.++.+.. .|+..+-|.+.+..-+|++
T Consensus 57 v~k~-t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr~~i 129 (135)
T cd08692 57 LVKS-SNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPEKVV 129 (135)
T ss_pred cEEC-CCCCceecceEEEeCCchhheeEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHhCCCCee
Confidence 3456 5 46999999999999854 35666677777665 79999999999874 4566899999986545543
No 132
>PLN02230 phosphoinositide phospholipase C 4
Probab=97.77 E-value=7e-05 Score=86.64 Aligned_cols=69 Identities=19% Similarity=0.231 Sum_probs=59.8
Q ss_pred CCCCCCCCCccceeEEEecccC-CceEEEEEEeCCCC-CCeeEEEEEeecccccCCCccceEEecccCCCCCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPI-GATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISS 73 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~-~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~ 73 (744)
|++| +-||+|||+|.|++.-+ .+-|-|.|.|.|.. ++++||.+.||++.|..|= +.++|.+.+|.+++.
T Consensus 518 v~~n-~~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~~ 588 (598)
T PLN02230 518 IEYD-TWTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYSS 588 (598)
T ss_pred ccCC-CCCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCCC
Confidence 4566 99999999999998876 58899999999985 4899999999999999886 467999999998744
No 133
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=97.70 E-value=4.6e-05 Score=64.95 Aligned_cols=44 Identities=32% Similarity=0.521 Sum_probs=38.3
Q ss_pred CCCCCCCCCccceeEEEeccc-CCceEEEEEEeCCCCC-CeeEEEEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAH-MASNIIFTVKDDNPIG-ATLIGRAY 45 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah-~~~~l~~~vkd~d~~~-~~~iG~~~ 45 (744)
+++| +.+|+|||+|.|++.. ..+.|.|.|.|.+..+ +++||+++
T Consensus 40 ~~~~-~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 40 VKKN-TSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp CBSS-BSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEEEEEEE
T ss_pred eeec-cccceeeeeeeeeeecccccceEEEEEECCCCCCCCEEEEEC
Confidence 4567 8999999999999554 5677999999999999 89999985
No 134
>PLN02228 Phosphoinositide phospholipase C
Probab=97.69 E-value=0.00012 Score=84.40 Aligned_cols=81 Identities=17% Similarity=0.250 Sum_probs=65.9
Q ss_pred CCCCCCCCCcc-ceeEEEecccC-CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceE
Q 004579 1 MLKKEQSNPRW-YESFHIYCAHM-ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKI 77 (744)
Q Consensus 1 vi~n~~~~P~W-ne~F~~~~ah~-~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~I 77 (744)
+++| +.||+| ||+|.|++..+ .+-|-|.|+|.|..+ +++||.+.||++.|..|= +.++|.+.+|++.. .++|
T Consensus 480 ~~~n-~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~-~atL 554 (567)
T PLN02228 480 TAVD-QWFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYK-NTRL 554 (567)
T ss_pred ccCC-CCCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCC-CeEE
Confidence 3567 789999 99999998876 488999999999664 899999999999999885 47899999999874 4556
Q ss_pred EEEEEeecc
Q 004579 78 HVKLQYFDV 86 (744)
Q Consensus 78 rV~lqf~p~ 86 (744)
-|.+.+.+.
T Consensus 555 fv~~~~~~~ 563 (567)
T PLN02228 555 LVSFALDPP 563 (567)
T ss_pred EEEEEEcCc
Confidence 665555543
No 135
>PLN02222 phosphoinositide phospholipase C 2
Probab=97.67 E-value=0.00012 Score=84.64 Aligned_cols=76 Identities=20% Similarity=0.241 Sum_probs=62.1
Q ss_pred CCCCCCCCCccceeEEEecccC-CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIH 78 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~Ir 78 (744)
+|+| +.||+|||+|.|++..+ .+-|-|.|+|.|..+ +++||.+.|||+.|..|= +.++|.+.+|.++.. +.+-
T Consensus 501 ~v~n-n~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~~-a~Lf 575 (581)
T PLN02222 501 TLED-NWIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYKS-VKLL 575 (581)
T ss_pred ecCC-CCCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCCC-eeEE
Confidence 4567 68999999999998776 588999999999755 899999999999999885 467999999998744 4444
Q ss_pred EEE
Q 004579 79 VKL 81 (744)
Q Consensus 79 V~l 81 (744)
+.+
T Consensus 576 v~~ 578 (581)
T PLN02222 576 VKV 578 (581)
T ss_pred EEE
Confidence 433
No 136
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=97.66 E-value=0.001 Score=71.85 Aligned_cols=129 Identities=19% Similarity=0.203 Sum_probs=77.5
Q ss_pred hhhHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhc--CCeEEEEEeCCC-cccccccc
Q 004579 143 PHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASE--GVRVCMLVWDDR-TSVSLLKK 219 (744)
Q Consensus 143 ~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~r--GV~VriLvwD~~-~s~~~~~~ 219 (744)
|.++|+.+...|.+||++|+|++ +||-. ....|.+.|..+.+. -.+|.||+ |.. |+......
T Consensus 37 p~~fy~~lk~~I~~aq~Ri~las------LYlG~--------~E~elv~cl~~aL~~~~~L~v~iLl-D~~rgtr~~~~~ 101 (469)
T KOG3964|consen 37 PPEFYQRLKKLIKKAQRRIFLAS------LYLGK--------LERELVDCLSNALEKNPSLKVSILL-DFLRGTRELPNS 101 (469)
T ss_pred CHHHHHHHHHHHHHhhheeeeee------eccch--------hHHHHHHHHHHHhccCCCcEEEeeh-hhhhhcccCccc
Confidence 45789999999999999999996 34432 367899999888765 79999998 874 32221110
Q ss_pred ccccCCCcHHHHHHhcCCCcEEEEcCCCCC-CCC--cceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEccccc
Q 004579 220 DGLMATHDEETEKFFQGTDVHCILCPRNPD-DGG--SFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDL 296 (744)
Q Consensus 220 ~g~~~~~~~~~~~~l~~~gV~~~~~~~~~~-~~~--~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL 296 (744)
-. |....--.+++. ..|+|.++.. |. .+. +++-....-..+..|-|+.-+|++ ..+-|.|+
T Consensus 102 ~s-~llp~~l~kkf~--e~vd~~lyht-p~Lrg~~k~Lvp~rfneg~GlQhmKIy~fdde------------viiSGanl 165 (469)
T KOG3964|consen 102 CS-ALLPVWLGKKFP--ERVDESLYHT-PFLRGLSKSLVPARFNEGLGLQHMKIYGFDDE------------VIISGANL 165 (469)
T ss_pred ch-hhchHHHhhhhh--hhhceeeecC-hhhhhhhhhcCchhhccccchhhhhhhcccHh------------hhcccccc
Confidence 00 000000011222 2466665531 11 000 011011122356799999999996 57889999
Q ss_pred CCCCCC
Q 004579 297 CDGRYD 302 (744)
Q Consensus 297 ~~~R~D 302 (744)
+..++.
T Consensus 166 s~dyfT 171 (469)
T KOG3964|consen 166 SNDYFT 171 (469)
T ss_pred hhhhhc
Confidence 998553
No 137
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=97.63 E-value=0.00049 Score=81.30 Aligned_cols=117 Identities=18% Similarity=0.245 Sum_probs=81.0
Q ss_pred HHHHHHHHhccc-----EEEEeeccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEecCCCCCC
Q 004579 438 DAYIHAIRRAKN-----FIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGF 512 (744)
Q Consensus 438 ~ay~~aI~~A~~-----~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP~~p~g~ 512 (744)
...++.|++|.+ .|.|+- |-+++ +. .++.++.+|+++| ++|.|++-...-++
T Consensus 342 ~~v~~~i~~Aa~DP~V~~Ik~tl-Yr~~~-----~s---------------~ii~aL~~Aa~~G--k~V~v~veLkArfd 398 (672)
T TIGR03705 342 DPVVEFLRQAAEDPDVLAIKQTL-YRTSK-----DS---------------PIIDALIEAAENG--KEVTVVVELKARFD 398 (672)
T ss_pred HHHHHHHHHHhcCCCceEEEEEE-EEecC-----Cc---------------HHHHHHHHHHHcC--CEEEEEEEehhhcc
Confidence 567889999998 899965 54432 11 4678888999999 77888887433221
Q ss_pred CCCchhHHHHHHHHhhhhhhHHHHHHHHHHcCCCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcceee
Q 004579 513 PESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMI 592 (744)
Q Consensus 513 ~~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~Gv~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~i 592 (744)
. ..+. . ..+.|.++|+++ +|++ + ..
T Consensus 399 e-~~ni----~------------wa~~le~aG~~v-------iyg~------------~-------------------~~ 423 (672)
T TIGR03705 399 E-EANI----R------------WARRLEEAGVHV-------VYGV------------V-------------------GL 423 (672)
T ss_pred c-hhhH----H------------HHHHHHHcCCEE-------EEcC------------C-------------------Ce
Confidence 1 1222 2 356789999976 2322 1 14
Q ss_pred EeeeeEEEEec-------eEEEEcCccCCcccccCCCCcceEEEeecCC
Q 004579 593 YVHAKMMIVDD-------EYIIIGSANINQRSMEGARDTEIAMGGYQPY 634 (744)
Q Consensus 593 yvHSK~mIVDD-------~~~iIGSANin~RS~~g~rDsEi~l~i~d~~ 634 (744)
.+|||+|+||. .|+.|||.|+|....... +++++..-++.
T Consensus 424 k~H~K~~li~r~~~~~~~~y~~igTgN~n~~ta~~y--~D~~l~t~~~~ 470 (672)
T TIGR03705 424 KTHAKLALVVRREGGELRRYVHLGTGNYHPKTARLY--TDLSLFTADPE 470 (672)
T ss_pred eeeeEEEEEEEeeCCceEEEEEecCCCCCCcccccc--cceeEEEeChH
Confidence 89999999997 489999999999976555 66777654443
No 138
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=97.61 E-value=0.00013 Score=84.81 Aligned_cols=78 Identities=28% Similarity=0.489 Sum_probs=64.2
Q ss_pred CCCCCCCCccceeEEEecccC-CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEEE
Q 004579 2 LKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHV 79 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV 79 (744)
+.|.+-||.|+|+|.|++.-+ .+-|-|.|.|.|..+ ++++|...||++++..|= +-+||.+..|+.+. .++|-|
T Consensus 664 v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~~~-~asLfv 739 (746)
T KOG0169|consen 664 VKNNGFNPIWDEEFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGY---RHVPLLSREGEALS-SASLFV 739 (746)
T ss_pred eccCCcCcccCCeEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHhhCce---eeeeecCCCCcccc-ceeEEE
Confidence 445599999999999999997 489999999999998 899999999999999884 45789988998773 344444
Q ss_pred EEEe
Q 004579 80 KLQY 83 (744)
Q Consensus 80 ~lqf 83 (744)
.+++
T Consensus 740 ~i~~ 743 (746)
T KOG0169|consen 740 RIAI 743 (746)
T ss_pred EEEE
Confidence 4443
No 139
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=97.57 E-value=6.7e-05 Score=51.27 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=23.4
Q ss_pred cccCceeEEEEcCCCCCCCCcccceEEEEcccccCCC
Q 004579 263 MFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDG 299 (744)
Q Consensus 263 ~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~ 299 (744)
..++|+|++|||++ .+|+||.|++..
T Consensus 2 ~~~~H~K~~v~D~~-----------~~~iGs~N~~~~ 27 (28)
T smart00155 2 DGVLHTKLMIVDDE-----------IAYIGSANLDGR 27 (28)
T ss_pred CCcEEeEEEEEcCC-----------EEEEeCccCCCC
Confidence 35799999999999 999999999864
No 140
>PF13918 PLDc_3: PLD-like domain
Probab=97.48 E-value=0.00071 Score=66.68 Aligned_cols=56 Identities=23% Similarity=0.379 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhh-hcCCeEEEEE
Q 004579 147 WEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKA-SEGVRVCMLV 207 (744)
Q Consensus 147 ~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA-~rGV~VriLv 207 (744)
.++++..|++|++.|||+-..+.|-+ ....+.. ....|+++|++|| +|||+||+|+
T Consensus 84 ldAIl~~I~~A~~fI~IsVMdY~P~~-~~~~~~~----YWP~ID~ALR~AA~~R~V~VRlLI 140 (177)
T PF13918_consen 84 LDAILSVIDSAKKFIYISVMDYLPTS-RYSKPNR----YWPVIDDALRRAAIERGVKVRLLI 140 (177)
T ss_pred HHHHHHHHHhHhheEEEEEeecCCee-ecCCCCC----cchhHHHHHHHHHHHcCCeEEEEE
Confidence 58999999999999999999888843 3322222 4669999999998 8999999999
No 141
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.00015 Score=81.52 Aligned_cols=72 Identities=24% Similarity=0.522 Sum_probs=56.2
Q ss_pred CCCCccceeEEEecccCCceEEEEEEeCCCC------------CCeeEEEEEeecccccCCCccceEEecccCCCCCCCC
Q 004579 6 QSNPRWYESFHIYCAHMASNIIFTVKDDNPI------------GATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISS 73 (744)
Q Consensus 6 ~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~------------~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~ 73 (744)
..||+|||.|||.|-+..+.|.+.|.|.|.- ++|++|...|.|..+ +|+ .|.||+|-..--|.. .
T Consensus 337 ~lnpvw~ekfhfechnstdrikvrvwded~dlksklrqkl~resddflgqtvievrtl-sge-mdvwynlekrtdksa-v 413 (1283)
T KOG1011|consen 337 ELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTL-SGE-MDVWYNLEKRTDKSA-V 413 (1283)
T ss_pred ccchhhhhheeeeecCCCceeEEEEecCcccHHHHHHHHhhhcccccccceeEEEEec-ccc-hhhhcchhhccchhh-c
Confidence 6899999999999999999999999998731 579999999999876 676 789999964322322 3
Q ss_pred CceEEEE
Q 004579 74 GSKIHVK 80 (744)
Q Consensus 74 ~~~IrV~ 80 (744)
.++||+-
T Consensus 414 sgairlh 420 (1283)
T KOG1011|consen 414 SGAIRLH 420 (1283)
T ss_pred cceEEEE
Confidence 4455543
No 142
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=97.38 E-value=0.00033 Score=84.46 Aligned_cols=86 Identities=19% Similarity=0.355 Sum_probs=68.3
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCC-CCCCeeEEEEEeecccccCCCccce-EEecccCCCCCCCCCceEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDN-PIGATLIGRAYVPVEEVLGGEEVDK-WVEILDEDRNPISSGSKIH 78 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d-~~~~~~iG~~~ip~~~~~~g~~v~~-w~~l~~~~~k~~k~~~~Ir 78 (744)
|.+| ..||+|||+|.|++.-..+.|.+.+.|.+ .-.+.++|+++|++..+..-..+.. -+.+. .+.|+. +.|.
T Consensus 477 v~~n-t~nPvwNEt~Yi~lns~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~-~~~k~v---GrL~ 551 (1227)
T COG5038 477 VKKN-TLNPVWNETFYILLNSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL-RNTKNV---GRLT 551 (1227)
T ss_pred eeec-cCCccccceEEEEecccCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeee-ccCccc---eEEE
Confidence 4567 99999999999999999999999999954 5558999999999999885444433 55554 456644 8899
Q ss_pred EEEEeeccccccc
Q 004579 79 VKLQYFDVTKDRS 91 (744)
Q Consensus 79 V~lqf~p~~~~~~ 91 (744)
.-++|.|....-.
T Consensus 552 yDl~ffp~~e~k~ 564 (1227)
T COG5038 552 YDLRFFPVIEDKK 564 (1227)
T ss_pred EeeeeecccCCcc
Confidence 9999998876543
No 143
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=97.32 E-value=0.00019 Score=64.50 Aligned_cols=47 Identities=19% Similarity=0.308 Sum_probs=41.8
Q ss_pred CCCCccceeEEEecccCCceEEEEEEeCCCCCCeeEEEEEeecccccC
Q 004579 6 QSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLG 53 (744)
Q Consensus 6 ~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~ 53 (744)
+.||+|||+|+|++ +-+.+++|+|+|+..-..-+||..-|++++|.+
T Consensus 42 srnd~WnE~F~i~V-dk~nEiel~VyDk~~~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 42 SRNDRWNEDFEIPV-EKNNEEEVIVYDKGGDQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred CCCCcccceEEEEe-cCCcEEEEEEEeCCCCeecceeeehhhHHHHHH
Confidence 67999999999999 679999999999976557899999999998863
No 144
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=97.32 E-value=0.0034 Score=66.29 Aligned_cols=144 Identities=16% Similarity=0.175 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccCC
Q 004579 146 CWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMAT 225 (744)
Q Consensus 146 ~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~g~~~~ 225 (744)
+-+.+-..|.+|++-|-|..-.|. | ..-|.|+|..+-+|||-||||+ |..+...|...-.-+..
T Consensus 135 IKE~vR~~I~~A~kVIAIVMD~FT-------D--------~dIf~DLleAa~kR~VpVYiLL-D~~~~~~Fl~Mc~~~~v 198 (284)
T PF07894_consen 135 IKEVVRRMIQQAQKVIAIVMDVFT-------D--------VDIFCDLLEAANKRGVPVYILL-DEQNLPHFLEMCEKLGV 198 (284)
T ss_pred HHHHHHHHHHHhcceeEEEeeccc-------c--------HHHHHHHHHHHHhcCCcEEEEe-chhcChHHHHHHHHCCC
Confidence 568899999999999999864442 1 3567776666669999999999 98765533221000111
Q ss_pred CcHHHHHHhcCCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCCCC
Q 004579 226 HDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPF 305 (744)
Q Consensus 226 ~~~~~~~~l~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt~~ 305 (744)
+ ...++ +++|+...- ..+........-+..|+|+++||++ .+..|+-=++.. +..-
T Consensus 199 ~----~~~~~--nmrVRsv~G-----~~y~~rsg~k~~G~~~eKF~lvD~~-----------~V~~GSYSFtWs--~~~~ 254 (284)
T PF07894_consen 199 N----LQHLK--NMRVRSVTG-----CTYYSRSGKKFKGQLKEKFMLVDGD-----------KVISGSYSFTWS--SSRV 254 (284)
T ss_pred C----hhhcC--CeEEEEecC-----CeeecCCCCeeeCcccceeEEEecc-----------cccccccceeec--cccc
Confidence 1 12233 344432210 0011111123467899999999999 888888755532 1111
Q ss_pred ccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeChHHHHHHHHHHHHH
Q 004579 306 HSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRW 362 (744)
Q Consensus 306 H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gpaa~dl~~~F~~rW 362 (744)
| +-+-..+.|.+|.....-|..-.
T Consensus 255 ~---------------------------------r~~~~~~tGq~Ve~FD~EFR~Ly 278 (284)
T PF07894_consen 255 H---------------------------------RNLVTVLTGQIVESFDEEFRELY 278 (284)
T ss_pred c---------------------------------cceeEEEeccccchHhHHHHHHH
Confidence 1 13457789999999998887653
No 145
>PLN02866 phospholipase D
Probab=97.17 E-value=0.0018 Score=78.37 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHhcccEEEEeeccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEec
Q 004579 434 RSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVP 506 (744)
Q Consensus 434 ~sI~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP 506 (744)
.....++.+||.+||++|||+.=.|-|..|.+.+. .+ -++..+...|.+|+++| |+|+|++=
T Consensus 343 ~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~----~D-----~~g~RL~~lL~rKAkrG--VkVrVLLy 404 (1068)
T PLN02866 343 HAAFEAIASAIENAKSEIFITGWWLCPELYLRRPF----HD-----HESSRLDSLLEAKAKQG--VQIYILLY 404 (1068)
T ss_pred HHHHHHHHHHHHhcccEEEEEEccCCceEEEEecC----CC-----chHHHHHHHHHHHHHCC--CEEEEEEE
Confidence 46789999999999999999765554443332110 00 13567788888888888 89998743
No 146
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=97.16 E-value=0.00016 Score=78.45 Aligned_cols=66 Identities=21% Similarity=0.398 Sum_probs=56.0
Q ss_pred CCCCCCCCccceeEEEecccC--CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccC-CCC
Q 004579 2 LKKEQSNPRWYESFHIYCAHM--ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDE-DRN 69 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~--~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~-~~k 69 (744)
|+- +.||+|||+|.|.+--. .-.|-+.|.|=|..+ .|++|..++-+++|. ...+++||.|++. .|+
T Consensus 224 ik~-~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~-K~p~~GWyKlLsqeEGE 293 (683)
T KOG0696|consen 224 IKA-TLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQ-KAPVDGWYKLLSQEEGE 293 (683)
T ss_pred hhh-hcCccccceeEEecccccccceeEEEEecccccccccccceecccHHHHh-hcchhhHHHHhhhhcCc
Confidence 444 78999999999997653 577999999999887 799999999999998 5679999999974 555
No 147
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.99 E-value=0.00069 Score=78.37 Aligned_cols=83 Identities=17% Similarity=0.262 Sum_probs=63.2
Q ss_pred CCCCCCCCCccc-eeEEEecccC-CceEEEEEEeCCCCCC-eeEEEEEeecccccCCCccceEEecccCCCCCCCCCceE
Q 004579 1 MLKKEQSNPRWY-ESFHIYCAHM-ASNIIFTVKDDNPIGA-TLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKI 77 (744)
Q Consensus 1 vi~n~~~~P~Wn-e~F~~~~ah~-~~~l~~~vkd~d~~~~-~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~I 77 (744)
|++| +.||+|| |+|+|.+..+ .+-|-|.|.|.|++++ .+||.|..||.-|..|= +-+||-|...+.+.. +++
T Consensus 1108 V~dN-GlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySEdlEL-aSL 1182 (1267)
T KOG1264|consen 1108 VNDN-GLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGF---RSVPLKNGYSEDLEL-ASL 1182 (1267)
T ss_pred eccC-CCCCCCCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhhccc---eeeecccCchhhhhh-hhh
Confidence 6788 9999999 9999999987 4889999999999995 89999999999998884 345676643333322 334
Q ss_pred EEEEEeecccc
Q 004579 78 HVKLQYFDVTK 88 (744)
Q Consensus 78 rV~lqf~p~~~ 88 (744)
-|.++.+|+..
T Consensus 1183 Lv~i~m~~~~~ 1193 (1267)
T KOG1264|consen 1183 LVFIEMRPVLE 1193 (1267)
T ss_pred eeeeEeccccC
Confidence 45555566553
No 148
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=96.97 E-value=0.0015 Score=73.00 Aligned_cols=74 Identities=18% Similarity=0.410 Sum_probs=60.3
Q ss_pred CCCCccc-eeEEEeccc---CCceEEEEEEeCCCCC-CeeEEEEEeeccccc-C---------CCccceEEecccCCCCC
Q 004579 6 QSNPRWY-ESFHIYCAH---MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVL-G---------GEEVDKWVEILDEDRNP 70 (744)
Q Consensus 6 ~~~P~Wn-e~F~~~~ah---~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~-~---------g~~v~~w~~l~~~~~k~ 70 (744)
+.||.|| +-|.|.|.+ ....|.++++|.|..+ .|-||+++|.++.++ + |.++.+|||+.+.-.-
T Consensus 46 slnp~wnsdwfkfevddadlqdeplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihg- 124 (1169)
T KOG1031|consen 46 SLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHG- 124 (1169)
T ss_pred hcCCcccccceEEecChhhhccCCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceeccc-
Confidence 7899999 778888877 3578999999999998 599999999999886 1 5789999999975322
Q ss_pred CCCCceEEEEEE
Q 004579 71 ISSGSKIHVKLQ 82 (744)
Q Consensus 71 ~k~~~~IrV~lq 82 (744)
+.+.|.|.++
T Consensus 125 --irgeinvivk 134 (1169)
T KOG1031|consen 125 --IRGEINVIVK 134 (1169)
T ss_pred --ccceeEEEEE
Confidence 3577777655
No 149
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=96.91 E-value=0.00083 Score=76.95 Aligned_cols=79 Identities=19% Similarity=0.443 Sum_probs=60.6
Q ss_pred CCCCCCCccceeEEEeccc-CCceEEEEEEeCCCC-------------------------------------CCeeEEEE
Q 004579 3 KKEQSNPRWYESFHIYCAH-MASNIIFTVKDDNPI-------------------------------------GATLIGRA 44 (744)
Q Consensus 3 ~n~~~~P~Wne~F~~~~ah-~~~~l~~~vkd~d~~-------------------------------------~~~~iG~~ 44 (744)
+.++.||+|||+|.|.+.+ ..+..++-|.|.|-- .+|++|+.
T Consensus 184 k~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGci 263 (1103)
T KOG1328|consen 184 KKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCI 263 (1103)
T ss_pred ccccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCcccccccccc
Confidence 4458999999999999999 567788888776520 16899999
Q ss_pred EeecccccCCCccceEEecccCCCCCCCCCceEEEEEEe
Q 004579 45 YVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQY 83 (744)
Q Consensus 45 ~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV~lqf 83 (744)
.||+.+|- -.-+|.||.|..-+.|. |..+.+|+.++-
T Consensus 264 Nipl~EiP-~~Gld~WFkLepRS~~S-~VqG~~~LklwL 300 (1103)
T KOG1328|consen 264 NIPLAEIP-PDGLDQWFKLEPRSDKS-KVQGQVKLKLWL 300 (1103)
T ss_pred ccchhcCC-cchHHHHhccCcccccc-cccceEEEEEEE
Confidence 99999996 34489999998655443 356677776654
No 150
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=96.60 E-value=0.0025 Score=77.15 Aligned_cols=81 Identities=21% Similarity=0.352 Sum_probs=61.9
Q ss_pred CCCCCCCCccceeEEEeccc-CCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCC-CCCCceEE
Q 004579 2 LKKEQSNPRWYESFHIYCAH-MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNP-ISSGSKIH 78 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah-~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~-~k~~~~Ir 78 (744)
++. +.||+|||+|.|++.. ....++|.|+|-|..+ +++||.+.|+++.+..|..-.--.++ + ||- ....+.++
T Consensus 1080 ~Kk-tlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~l-d--gk~~~~~~g~~~ 1155 (1227)
T COG5038 1080 VKK-TLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPL-D--GKTFIVLDGTLH 1155 (1227)
T ss_pred hhc-cCCCCccccceEeeeccccceEEEEEeecccCCCccccccccccHhhcCcCCccceeeec-c--CcceEecccEee
Confidence 455 8999999999999885 6788999999999987 69999999999999977755544555 3 442 33456666
Q ss_pred EEEEeecc
Q 004579 79 VKLQYFDV 86 (744)
Q Consensus 79 V~lqf~p~ 86 (744)
....|++.
T Consensus 1156 ~~~~~r~~ 1163 (1227)
T COG5038 1156 PGFNFRSK 1163 (1227)
T ss_pred cceecchh
Confidence 65555543
No 151
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=96.58 E-value=0.0037 Score=59.29 Aligned_cols=50 Identities=8% Similarity=0.128 Sum_probs=43.5
Q ss_pred CCC--CccceeEEEecccC------------------------CceEEEEEEeCCCCC-CeeEEEEEeecccccCCC
Q 004579 6 QSN--PRWYESFHIYCAHM------------------------ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGE 55 (744)
Q Consensus 6 ~~~--P~Wne~F~~~~ah~------------------------~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~ 55 (744)
+.| |+||++|.|++.++ ...|+|+|.|+|.++ +++||.+.++++.+..+.
T Consensus 49 slnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 49 SLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cCCCCcEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 566 99999999998872 367999999999988 799999999999887654
No 152
>PF13918 PLDc_3: PLD-like domain
Probab=96.43 E-value=0.031 Score=55.31 Aligned_cols=56 Identities=30% Similarity=0.533 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcccEEEEeecccccccc------ccccCCCCcchhhhcccchHHHHHHHHH-HHHhCCceEEEEEecCCC
Q 004579 437 QDAYIHAIRRAKNFIYIENQYFLGSSF------AWSADGIKPEEINALHLIPKELSLKIVS-KIEAGERFTVYIVVPMWP 509 (744)
Q Consensus 437 ~~ay~~aI~~A~~~IyIenqYFi~~~~------~~~~~~~~~~~~~~~n~i~~~la~~ia~-a~~~g~~v~V~IvlP~~p 509 (744)
.+|.+++|..|++||||+--=++|... -||. |-.+|.+ |+.|| |+|++++..|.
T Consensus 84 ldAIl~~I~~A~~fI~IsVMdY~P~~~~~~~~~YWP~-----------------ID~ALR~AA~~R~--V~VRlLIS~W~ 144 (177)
T PF13918_consen 84 LDAILSVIDSAKKFIYISVMDYLPTSRYSKPNRYWPV-----------------IDDALRRAAIERG--VKVRLLISCWK 144 (177)
T ss_pred HHHHHHHHHhHhheEEEEEeecCCeeecCCCCCcchh-----------------HHHHHHHHHHHcC--CeEEEEEeecC
Confidence 679999999999999999655555322 3542 2234433 46788 99999999986
Q ss_pred CC
Q 004579 510 EG 511 (744)
Q Consensus 510 ~g 511 (744)
..
T Consensus 145 ht 146 (177)
T PF13918_consen 145 HT 146 (177)
T ss_pred CC
Confidence 43
No 153
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=96.02 E-value=1.9 Score=50.41 Aligned_cols=95 Identities=20% Similarity=0.282 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHhccc---EEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCccccccccc
Q 004579 144 HRCWEDIFDAITNARH---MIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKD 220 (744)
Q Consensus 144 ~~~~~~l~~aI~~Ak~---~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~ 220 (744)
-+.|+.+.+-|++|-. -+-| .+.|.|.+. ...+.++|.+||+.|-+|-+|| +.... |..
T Consensus 351 YeSF~~Vv~fl~qAA~DP~VLAI-------KqTLYRt~~------dSpIV~ALi~AA~nGKqVtvlV--ELkAR--FDE- 412 (696)
T COG0855 351 YESFEPVVEFLRQAAADPDVLAI-------KQTLYRTSK------DSPIVRALIDAAENGKQVTVLV--ELKAR--FDE- 412 (696)
T ss_pred hhhhHHHHHHHHHhhcCCCeEEE-------EEEEEecCC------CCHHHHHHHHHHHcCCeEEEEE--EEhhh--cCh-
Confidence 4678889999988853 2222 234555543 6799999999999999999998 11111 110
Q ss_pred cccCCCcHHHHHHhcCCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCC
Q 004579 221 GLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSP 276 (744)
Q Consensus 221 g~~~~~~~~~~~~l~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~ 276 (744)
..+-.+.+.|+.+||||+.- -..+..|-|+++|=.+
T Consensus 413 ----E~NI~WAk~LE~AGvhVvyG----------------~~glKtHAKm~lVvRr 448 (696)
T COG0855 413 ----EANIHWAKRLERAGVHVVYG----------------VVGLKTHAKMLLVVRR 448 (696)
T ss_pred ----hhhhHHHHHHHhCCcEEEec----------------ccceeeeeeEEEEEEe
Confidence 01124678899999998741 1246789999888655
No 154
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=0.0043 Score=70.09 Aligned_cols=66 Identities=35% Similarity=0.590 Sum_probs=51.2
Q ss_pred CCCCCCCCccceeEEEeccc---CCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCC
Q 004579 2 LKKEQSNPRWYESFHIYCAH---MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNP 70 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah---~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~ 70 (744)
.++ +.||+|||+|.|.|.- ....|.|+|.|.|.+| .++||.+.|.... .|..+.-|.+.++.-++|
T Consensus 342 ~~~-~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~p~~p 411 (421)
T KOG1028|consen 342 KKK-TLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEMLNSPRKP 411 (421)
T ss_pred ccC-CCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHHhCccCc
Confidence 355 8999999999997663 1357999999999998 5899999988775 566677777777544444
No 155
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=95.96 E-value=0.042 Score=58.25 Aligned_cols=123 Identities=18% Similarity=0.274 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHHHhcccEEEEeeccccccccccccCCCCcchhhhcccchHHHHHHHHHHH-HhCCceEEEEEecCCCCC
Q 004579 433 DRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKI-EAGERFTVYIVVPMWPEG 511 (744)
Q Consensus 433 e~sI~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~-~~g~~v~V~IvlP~~p~g 511 (744)
..+|.+...+.|++|++-|=|..--|.- .+|..-|..|+ +|+ |-|||++..
T Consensus 132 ~p~IKE~vR~~I~~A~kVIAIVMD~FTD----------------------~dIf~DLleAa~kR~--VpVYiLLD~---- 183 (284)
T PF07894_consen 132 QPHIKEVVRRMIQQAQKVIAIVMDVFTD----------------------VDIFCDLLEAANKRG--VPVYILLDE---- 183 (284)
T ss_pred CCCHHHHHHHHHHHhcceeEEEeecccc----------------------HHHHHHHHHHHHhcC--CcEEEEech----
Confidence 4579999999999999999999888862 23455566666 778 899999985
Q ss_pred CCCCchhHHHHHHHHhhhhhhHHHHHHHHHHcCCCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhccee
Q 004579 512 FPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFM 591 (744)
Q Consensus 512 ~~~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~Gv~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~ 591 (744)
.+++.++. .-.+.++...--..+++-++ . +-.|.- ...+.+.
T Consensus 184 ----~~~~~Fl~---------------Mc~~~~v~~~~~~nmrVRsv-----~-G~~y~~-------------rsg~k~~ 225 (284)
T PF07894_consen 184 ----QNLPHFLE---------------MCEKLGVNLQHLKNMRVRSV-----T-GCTYYS-------------RSGKKFK 225 (284)
T ss_pred ----hcChHHHH---------------HHHHCCCChhhcCCeEEEEe-----c-CCeeec-------------CCCCeee
Confidence 33433322 22333443210011111111 0 011211 0112456
Q ss_pred eEeeeeEEEEeceEEEEcCccCCcccccCC
Q 004579 592 IYVHAKMMIVDDEYIIIGSANINQRSMEGA 621 (744)
Q Consensus 592 iyvHSK~mIVDD~~~iIGSANin~RS~~g~ 621 (744)
+-+|.|.||||.+.|+-||.-+..-|-..+
T Consensus 226 G~~~eKF~lvD~~~V~~GSYSFtWs~~~~~ 255 (284)
T PF07894_consen 226 GQLKEKFMLVDGDKVISGSYSFTWSSSRVH 255 (284)
T ss_pred CcccceeEEEecccccccccceeecccccc
Confidence 789999999999999999999998888765
No 156
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=95.80 E-value=0.018 Score=66.65 Aligned_cols=85 Identities=19% Similarity=0.275 Sum_probs=71.7
Q ss_pred CCCCCCCCccceeEEEecccCCceEEEEEEeCCCCCCeeEEEEEeecccccCCCccceEEeccc--CCCCCCCCCceEEE
Q 004579 2 LKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILD--EDRNPISSGSKIHV 79 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~v~~w~~l~~--~~~k~~k~~~~IrV 79 (744)
|.. +.-|-|.|.|+|.+.-.-..|.|-|+|.|.--++.||++-|.=|+|..-.-.|.||.|.. +|.+ ..++||+
T Consensus 45 v~k-sL~PF~gEe~~~~iP~~F~~l~fYv~D~d~~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~dsE---VQG~v~l 120 (800)
T KOG2059|consen 45 VEK-SLCPFFGEEFYFEIPRTFRYLSFYVWDRDLKRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDSE---VQGKVHL 120 (800)
T ss_pred hhh-hcCCccccceEEecCcceeeEEEEEeccccccccccceeeeeHHHHhhCCCCccceeccccCCChh---hceeEEE
Confidence 344 788999999999998888899999999994449999999999999998778999999854 3443 5689999
Q ss_pred EEEeecccccc
Q 004579 80 KLQYFDVTKDR 90 (744)
Q Consensus 80 ~lqf~p~~~~~ 90 (744)
.+++.+...+.
T Consensus 121 ~l~~~e~~~~~ 131 (800)
T KOG2059|consen 121 ELALTEAIQSS 131 (800)
T ss_pred EEEeccccCCC
Confidence 99999877653
No 157
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=95.38 E-value=0.21 Score=49.57 Aligned_cols=141 Identities=20% Similarity=0.288 Sum_probs=94.8
Q ss_pred hhHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCcccccccccccc
Q 004579 144 HRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLM 223 (744)
Q Consensus 144 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~g~~ 223 (744)
+.....+.+.|+.|.+...+..++- .+ +-.-+.+.|..+.++||++|+|- ++.-..
T Consensus 38 e~il~~Li~~l~k~~ef~IsVaFit--------~s------G~sll~~~L~d~~~Kgvkgkilt-s~Ylnf--------- 93 (198)
T COG3886 38 EKILPRLIDELEKADEFEISVAFIT--------ES------GLSLLFDLLLDLVNKGVKGKILT-SDYLNF--------- 93 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEEEEee--------Cc------cHHHHHHHHHHHhcCCceEEEec-ccccCc---------
Confidence 4567899999999999988887763 22 35788899999999999999997 443221
Q ss_pred CCCcHHHHHHhcCCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCC
Q 004579 224 ATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDT 303 (744)
Q Consensus 224 ~~~~~~~~~~l~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt 303 (744)
|++...++.+.-.+|+|+.+.-. ...+|-|-.|.-... ...|++|+.||++.-.-
T Consensus 94 -TdP~al~~Ll~~~nve~r~~~~~---------------~~~fH~KgYiFe~~~--------~~taiiGSsNlt~sALt- 148 (198)
T COG3886 94 -TDPVALRKLLMLKNVELRVSTIG---------------SANFHTKGYIFEHNT--------GITAIIGSSNLTDSALT- 148 (198)
T ss_pred -cCHHHHHHHHhhhccceEEEecC---------------ccccccceeEEEecc--------eEEEEEccchhhhhhcc-
Confidence 22234455555556887765311 245777777754432 23899999999987431
Q ss_pred CCccccccccccCCCCCCCCCCCCCCcCCCCCCCCeee-eeeeeeChHHHHHHHHHHHHHHH
Q 004579 304 PFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHD-IHSRLEGPIAWDVLFNFEQRWRK 364 (744)
Q Consensus 304 ~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhD-v~~~i~Gpaa~dl~~~F~~rW~~ 364 (744)
.. ..|-- +...-.|-.|..+...|+.-|..
T Consensus 149 ~n-------------------------------~Ewn~k~s~~~~g~i~~~~k~~f~r~~~~ 179 (198)
T COG3886 149 VN-------------------------------EEWNLKVSSSKNGDIVKEVKVTFERQFQN 179 (198)
T ss_pred cC-------------------------------HHHHhhhccccccchHHHHHHHHHHHHHh
Confidence 11 12311 12223688999999999999973
No 158
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=95.20 E-value=0.027 Score=52.56 Aligned_cols=58 Identities=24% Similarity=0.521 Sum_probs=47.2
Q ss_pred CCCCccceeEEEecc--------c--------CCceEEEEEEeCCCC-----------CCeeEEEEEeeccccc-CCCcc
Q 004579 6 QSNPRWYESFHIYCA--------H--------MASNIIFTVKDDNPI-----------GATLIGRAYVPVEEVL-GGEEV 57 (744)
Q Consensus 6 ~~~P~Wne~F~~~~a--------h--------~~~~l~~~vkd~d~~-----------~~~~iG~~~ip~~~~~-~g~~v 57 (744)
+--|+.|-||.|+|. . ..++|+|+|...++- |+=++|.++||+.+++ .-+-+
T Consensus 58 SFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGi 137 (143)
T cd08683 58 SFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGI 137 (143)
T ss_pred hcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCc
Confidence 667999999999997 2 147899999776543 3458999999999999 45679
Q ss_pred ceEEec
Q 004579 58 DKWVEI 63 (744)
Q Consensus 58 ~~w~~l 63 (744)
.+||||
T Consensus 138 tGW~pi 143 (143)
T cd08683 138 TGWYPI 143 (143)
T ss_pred cccccC
Confidence 999996
No 159
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=95.16 E-value=0.14 Score=61.30 Aligned_cols=134 Identities=18% Similarity=0.179 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCC-C--CCCCchhHHHHHHHHhhhc--CCeEEEEE--eCCCcc---
Q 004579 144 HRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSR-R--PKPGGDIMLGELLKKKASE--GVRVCMLV--WDDRTS--- 213 (744)
Q Consensus 144 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~-~--~~~~~~~~l~~lL~~aA~r--GV~VriLv--wD~~~s--- 213 (744)
...-.+-+++|++|+|.|||+. .|++.... . .....+..|.+-+.+|-++ --+|+|++ |-.+..
T Consensus 565 ~SIq~AYv~~Ir~a~hFIYIEN------QfFi~ss~~~~~~~n~v~~ela~rIv~a~ra~e~frVYIVIPL~PgfEG~~~ 638 (887)
T KOG1329|consen 565 DSIQNAYVKAIRNAEHFIYIEN------QFFIGSSFNWDSVLNKVGDELALRIVKAIRAGEKFRVYIVIPLWPGFEGDDT 638 (887)
T ss_pred HHHHHHHHHHHHhccceEEEee------eeEEeeccCCCcccchHHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCC
Confidence 3456788999999999999985 12221111 0 0111344555555555444 57788776 431111
Q ss_pred ---ccc-------cccccccCCCcHHHHHHhcCCCcEEEEcCCCCCCCCcce--------eeecccccccCceeEEEEcC
Q 004579 214 ---VSL-------LKKDGLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFI--------QDIQISAMFTHHQKIVVVDS 275 (744)
Q Consensus 214 ---~~~-------~~~~g~~~~~~~~~~~~l~~~gV~~~~~~~~~~~~~~~~--------~~~~~~~~~~hHqKivVVD~ 275 (744)
.++ .++ |..-.....+.|++.|+.-. .+-...+++ .+...+.+.-=|-|++|||+
T Consensus 639 p~~~svqaIl~wQyrT---ms~g~~sI~~~Lka~g~d~~----~yi~f~~lr~~g~~e~~~~~~~~emIYVHsK~mIvDD 711 (887)
T KOG1329|consen 639 PGSGSVQAILHWQYRT---MSMGYKSIYKALKAVGLDPA----DYIDFLGLRCLGNREEQAQRLRREMIYVHSKLMIVDD 711 (887)
T ss_pred CCcchHHHHHHHHHHH---HhhhHHHHHHHHHHhcCCcc----ccceeeeeeeeeccccccccceEEEEEEeeeeEEecC
Confidence 100 000 00011234566776666510 000000000 00112234556999999999
Q ss_pred CCCCCCCcccceEEEEcccccCCCCC
Q 004579 276 PMPNGDPERRRIMSFVGGIDLCDGRY 301 (744)
Q Consensus 276 ~~~~~~~~~~~~vAfvGGinL~~~R~ 301 (744)
+ .+.||+.||.+...
T Consensus 712 ~-----------~vIIGSANINqRSm 726 (887)
T KOG1329|consen 712 E-----------YVIIGSANINQRSM 726 (887)
T ss_pred C-----------EEEEeecccchhhc
Confidence 9 99999999998544
No 160
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=95.03 E-value=5.1 Score=43.83 Aligned_cols=136 Identities=20% Similarity=0.229 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcc-----cEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCccccccccc
Q 004579 146 CWEDIFDAITNAR-----HMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKD 220 (744)
Q Consensus 146 ~~~~l~~aI~~Ak-----~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~ 220 (744)
.|+.+.+-|++|- .+|.|+-|.+ . ....+.++|.+||+.|=+|.++| .-. .. | .-
T Consensus 19 sf~~vv~fl~eAA~DP~V~aIk~TLYR~---------a------~~S~iv~aLi~AA~nGK~Vtv~v-ELk-AR-F-DE- 78 (352)
T PF13090_consen 19 SFDPVVDFLREAAEDPDVLAIKITLYRV---------A------SNSPIVNALIEAAENGKQVTVLV-ELK-AR-F-DE- 78 (352)
T ss_dssp -TCHHHHHHHHHCC-TTEEEEEEEESSS----------------TT-HHHHHHHHHHHTT-EEEEEE-STT-SS-S-TT-
T ss_pred ccHHHHHHHHHHhcCCCccEEEEEEEec---------C------CCCHHHHHHHHHHHcCCEEEEEE-EEe-cc-c-cH-
Confidence 3556777777773 5777776654 2 25799999999999999999998 221 11 1 00
Q ss_pred cccCCCcHHHHHHhcCCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCC
Q 004579 221 GLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGR 300 (744)
Q Consensus 221 g~~~~~~~~~~~~l~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R 300 (744)
..+-.+.+.|+.+||+|..-- ..+--|-|+++|=.+..+ +-+-.+++|-=|....
T Consensus 79 ----e~Ni~Wa~~Le~aGv~ViyG~----------------~glKvHaK~~lI~R~e~~----~~~~Y~hlgTGNyNe~- 133 (352)
T PF13090_consen 79 ----ENNIHWAKRLEEAGVHVIYGV----------------PGLKVHAKICLIVRREGG----GLRRYAHLGTGNYNEK- 133 (352)
T ss_dssp ----CCCCCCCHHHHHCT-EEEE------------------TT-EE--EEEEEEEEETT----EEEEEEEEESS-SSTT-
T ss_pred ----HHHhHHHhhHHhcCeEEEcCC----------------CChhheeeEEEEEEEeCC----cEEEEEEEcCCCcCcc-
Confidence 001135678999999987421 245689999998655111 1223566664443221
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeCh-HHHHHHHHHHH
Q 004579 301 YDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGP-IAWDVLFNFEQ 360 (744)
Q Consensus 301 ~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gp-aa~dl~~~F~~ 360 (744)
.. .-+-|+.+.-.-| .+.|+...|..
T Consensus 134 ---------------------------------TA-r~YtD~~l~Ta~~~i~~D~~~~F~~ 160 (352)
T PF13090_consen 134 ---------------------------------TA-RIYTDLSLFTADPEIGADVAKLFNY 160 (352)
T ss_dssp ---------------------------------HC-CCEEEEEEEE--HHHHHHHHHHHHH
T ss_pred ---------------------------------ch-hheecceeecCCHHHHHHHHHHHHH
Confidence 11 2356888777666 78999999854
No 161
>PLN02352 phospholipase D epsilon
Probab=94.79 E-value=0.1 Score=62.17 Aligned_cols=64 Identities=20% Similarity=0.174 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCC--CCCCchhHHHHHHHHhhh--cCCeEEEEE
Q 004579 144 HRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRR--PKPGGDIMLGELLKKKAS--EGVRVCMLV 207 (744)
Q Consensus 144 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~--~~~~~~~~l~~lL~~aA~--rGV~VriLv 207 (744)
..+.++.++||++|||.|||+.=-|....+.+..+.. ...-.+..|.+.|.+|.+ ++-+|+|++
T Consensus 452 rSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~kI~~kir~~e~f~V~IVi 519 (758)
T PLN02352 452 RSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVYILI 519 (758)
T ss_pred hHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 4578999999999999999985212111112211110 001134577888888765 478888887
No 162
>PLN03008 Phospholipase D delta
Probab=94.42 E-value=0.11 Score=62.47 Aligned_cols=71 Identities=17% Similarity=0.098 Sum_probs=41.2
Q ss_pred CCcccCh-hhHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCC--CCCCCchhHHHHHHHHhhh--cCCeEEEEE
Q 004579 137 GGKYYEP-HRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSR--RPKPGGDIMLGELLKKKAS--EGVRVCMLV 207 (744)
Q Consensus 137 ~g~~~~~-~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~--~~~~~~~~~l~~lL~~aA~--rGV~VriLv 207 (744)
.|+...- ..+..+.+++|++|||.|||+.=-|....+.+.... ....-.+..|.+.|.+|.+ ++-+|+|++
T Consensus 558 ~gk~~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IVi 633 (868)
T PLN03008 558 CAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVI 633 (868)
T ss_pred cccccchhhhHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEE
Confidence 3443333 346789999999999999998522211111111000 0001134567777777654 588888877
No 163
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=94.04 E-value=0.12 Score=53.80 Aligned_cols=49 Identities=29% Similarity=0.275 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeC
Q 004579 145 RCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWD 209 (744)
Q Consensus 145 ~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD 209 (744)
...+.+.+.|++|+++|+|..|.= .-..|.+.|++|.+|||+|.++++.
T Consensus 10 ~I~~~i~elI~~Ae~eI~is~~~~----------------~l~~l~~~L~~a~~rGV~V~li~~~ 58 (233)
T PF11495_consen 10 TILERIRELIENAESEIYISIPPE----------------FLEELRDELEEAVDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHC-SSEEEEEE-GG----------------GHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHhheEEEEEcCHH----------------HHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 467899999999999999998731 3579999999999999999999955
No 164
>PLN02270 phospholipase D alpha
Probab=93.45 E-value=0.21 Score=59.92 Aligned_cols=143 Identities=17% Similarity=0.236 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHHhcccEEEEEE-eccCcceEEeeCCC-CCC-----CCchhHHHHHHHHhhh--cCCeEEEEEeCCC-cc
Q 004579 144 HRCWEDIFDAITNARHMIYITG-WSVYTEISLVRDSR-RPK-----PGGDIMLGELLKKKAS--EGVRVCMLVWDDR-TS 213 (744)
Q Consensus 144 ~~~~~~l~~aI~~Ak~~I~I~~-w~~~~~~~L~r~~~-~~~-----~~~~~~l~~lL~~aA~--rGV~VriLvwD~~-~s 213 (744)
..+..+.++||++|+++|||+. |-++. .+-...+. .+. .-....|...|.+|.+ ++-+|+|++ --. +.
T Consensus 498 rsI~~aYi~AI~~A~~~IYIENQYF~ss-s~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIVi-P~~peG 575 (808)
T PLN02270 498 RSIQDAYIHAIRRAKDFIYIENQYFLGS-SFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVV-PMWPEG 575 (808)
T ss_pred hHHHHHHHHHHHhhhhEEEeehhhhhhh-hhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEE-CCCCCC
Confidence 4578899999999999999985 32222 11111000 000 0123566666776654 588999887 211 11
Q ss_pred cc-----------ccccccccCCCcHHHHHHhcCCCcE------EE-EcCCC----------CC----CCCccee-eecc
Q 004579 214 VS-----------LLKKDGLMATHDEETEKFFQGTDVH------CI-LCPRN----------PD----DGGSFIQ-DIQI 260 (744)
Q Consensus 214 ~~-----------~~~~~g~~~~~~~~~~~~l~~~gV~------~~-~~~~~----------~~----~~~~~~~-~~~~ 260 (744)
.. ..++ |..--....+.|+++|+. +. +|.++ |. ....... +...
T Consensus 576 ~~e~~~vq~il~wq~~T---M~~~~~~I~~~Lk~~g~~~dp~dyL~ff~L~nre~~~~g~~~P~~~~~~~~~~~~aq~~r 652 (808)
T PLN02270 576 IPESGSVQAILDWQRRT---MEMMYKDVIQALRAKGLEEDPRNYLTFFCLGNREVKKSGEYEPSEKPEPDTDYIRAQEAR 652 (808)
T ss_pred CcccchHHHHHHHHHHH---HHHHHHHHHHHHHHcCccCCccceEEEEeccccccccCcccCCccCCcccchhhhhhhcc
Confidence 10 0000 111112345667776653 11 22211 10 0000000 0001
Q ss_pred cccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCC
Q 004579 261 SAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYD 302 (744)
Q Consensus 261 ~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~D 302 (744)
+..---|.|++|||++ .+.||+.||....++
T Consensus 653 r~~I~vH~K~~ivDd~-----------~~~iGSaN~n~rS~~ 683 (808)
T PLN02270 653 RFMIYVHTKMMIVDDE-----------YIIIGSANINQRSMD 683 (808)
T ss_pred ceeEEEeeeEEEEcCC-----------EEEEecccccccccc
Confidence 2244579999999999 999999999886554
No 165
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=90.77 E-value=0.38 Score=56.10 Aligned_cols=82 Identities=15% Similarity=0.237 Sum_probs=60.0
Q ss_pred CCCCccceeEEEecccC----------------CceEEEEEEe-CCCCC-CeeEEEEEeecccccCCCccceEEecccC-
Q 004579 6 QSNPRWYESFHIYCAHM----------------ASNIIFTVKD-DNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDE- 66 (744)
Q Consensus 6 ~~~P~Wne~F~~~~ah~----------------~~~l~~~vkd-~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~- 66 (744)
+.||.|||.|.|.+.-. ..+|.+.+.+ .+.+. ++++|++.||++...--+-.+.||-|...
T Consensus 176 t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~ 255 (800)
T KOG2059|consen 176 TTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRP 255 (800)
T ss_pred ccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCC
Confidence 89999999999987655 3456666666 44444 89999999999999866778999998753
Q ss_pred CCCCC---CCCceEEEEEEeeccc
Q 004579 67 DRNPI---SSGSKIHVKLQYFDVT 87 (744)
Q Consensus 67 ~~k~~---k~~~~IrV~lqf~p~~ 87 (744)
+|+.. -..+.+|+.+.++...
T Consensus 256 ~g~~~~~~~~lGslrl~v~y~~D~ 279 (800)
T KOG2059|consen 256 NGEKSSDGGDLGSLRLNVTYTEDH 279 (800)
T ss_pred CcccCCCCCCccceeeeEEeeece
Confidence 34322 2346778887776443
No 166
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=89.96 E-value=1 Score=49.11 Aligned_cols=92 Identities=18% Similarity=0.353 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhCCceEEEEEecCCCCCCCCCchhHHHHHHHHhhhhhhHHHHHHHHHHcCCCCCCCCceEEeecCCccc
Q 004579 484 ELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREV 563 (744)
Q Consensus 484 ~la~~ia~a~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~Gv~~~p~~yl~~~~l~~~~~ 563 (744)
.++.++.+|++.|. +|.+++-...-.+- ..++ +| .+.|.++|+++ +|++
T Consensus 51 ~iv~aLi~AA~nGK--~Vtv~vELkARFDE-e~Ni----~W------------a~~Le~aGv~V-------iyG~----- 99 (352)
T PF13090_consen 51 PIVNALIEAAENGK--QVTVLVELKARFDE-ENNI----HW------------AKRLEEAGVHV-------IYGV----- 99 (352)
T ss_dssp HHHHHHHHHHHTT---EEEEEESTTSSSTT-CCCC----CC------------CHHHHHCT-EE-------EE-------
T ss_pred HHHHHHHHHHHcCC--EEEEEEEEeccccH-HHHh----HH------------HhhHHhcCeEE-------EcCC-----
Confidence 36788889999995 56666665543332 2333 23 46789999976 3432
Q ss_pred ccCCccCCCCCCCCchhHHHHHhhcceeeEeeeeEEEEe-------ceEEEEcCccCCcccccCCCCcceEEEeecCC
Q 004579 564 KRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVD-------DEYIIIGSANINQRSMEGARDTEIAMGGYQPY 634 (744)
Q Consensus 564 ~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK~mIVD-------D~~~iIGSANin~RS~~g~rDsEi~l~i~d~~ 634 (744)
. ..-||||+++|= -+|+-+|+-|.|...-..- |.+++..-++.
T Consensus 100 ------~--------------------glKvHaK~~lI~R~e~~~~~~Y~hlgTGNyNe~TAr~Y--tD~~l~Ta~~~ 149 (352)
T PF13090_consen 100 ------P--------------------GLKVHAKICLIVRREGGGLRRYAHLGTGNYNEKTARIY--TDLSLFTADPE 149 (352)
T ss_dssp ------T--------------------T-EE--EEEEEEEEETTEEEEEEEEESS-SSTTHCCCE--EEEEEEE--HH
T ss_pred ------C--------------------ChhheeeEEEEEEEeCCcEEEEEEEcCCCcCccchhhe--ecceeecCCHH
Confidence 1 147999999985 3899999999999987665 66777654443
No 167
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.74 E-value=0.2 Score=57.35 Aligned_cols=85 Identities=16% Similarity=0.211 Sum_probs=59.5
Q ss_pred CCCCCCCccceeEEEecccC----CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceE
Q 004579 3 KKEQSNPRWYESFHIYCAHM----ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKI 77 (744)
Q Consensus 3 ~n~~~~P~Wne~F~~~~ah~----~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~I 77 (744)
+| +-.|..||+|||.+... .-+|.|.|||.=.-- +.++|.+.+++.++...----.|+||-..-.-.-++...+
T Consensus 1171 sn-nWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgrrihmDeTGLtiL 1249 (1283)
T KOG1011|consen 1171 SN-NWAPKYNETFHFFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGRRIHMDETGLTIL 1249 (1283)
T ss_pred CC-CcCcccCceeEEEeccCCCCceEEEEEeehhheeecccceeeeeeeehhhHhhcCceeEeeeccccccccccchhHH
Confidence 35 77899999999998774 468999999976554 6899999999999984334668999943211112233455
Q ss_pred EEEEEeecccc
Q 004579 78 HVKLQYFDVTK 88 (744)
Q Consensus 78 rV~lqf~p~~~ 88 (744)
|++-|+...+.
T Consensus 1250 RILSQRs~DeV 1260 (1283)
T KOG1011|consen 1250 RILSQRSNDEV 1260 (1283)
T ss_pred HHhhhccchHH
Confidence 66555544433
No 168
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=86.47 E-value=3.3 Score=39.22 Aligned_cols=77 Identities=16% Similarity=0.355 Sum_probs=58.1
Q ss_pred ccceeEEEeccc---------CCceEEEEEEeCCCCCC-eeEEEEEeecccccC--CCccceEEecccCCCCCCCCCceE
Q 004579 10 RWYESFHIYCAH---------MASNIIFTVKDDNPIGA-TLIGRAYVPVEEVLG--GEEVDKWVEILDEDRNPISSGSKI 77 (744)
Q Consensus 10 ~Wne~F~~~~ah---------~~~~l~~~vkd~d~~~~-~~iG~~~ip~~~~~~--g~~v~~w~~l~~~~~k~~k~~~~I 77 (744)
.|||.|.++|.= ..-.+.|+|...+.-|. ..+|.+.|-+.+..+ .+.+..-+++... .+..+.+
T Consensus 53 ~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L 128 (143)
T PF10358_consen 53 QWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATL 128 (143)
T ss_pred EEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEE
Confidence 699999998642 23578899988765454 599999999999996 4677778888643 2356888
Q ss_pred EEEEEeecccccc
Q 004579 78 HVKLQYFDVTKDR 90 (744)
Q Consensus 78 rV~lqf~p~~~~~ 90 (744)
++.++..+....+
T Consensus 129 ~isi~~~~~~~~~ 141 (143)
T PF10358_consen 129 SISISLSELREDP 141 (143)
T ss_pred EEEEEEEECccCC
Confidence 9988888776544
No 169
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=86.13 E-value=0.32 Score=56.67 Aligned_cols=51 Identities=22% Similarity=0.408 Sum_probs=42.8
Q ss_pred CCCCCCCCCccceeEEEeccc-----CCceEEEEEEeCCCCC-CeeEEEEEeeccccc
Q 004579 1 MLKKEQSNPRWYESFHIYCAH-----MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVL 52 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah-----~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~ 52 (744)
|.+. +.||+.+|+|.|.|.- -++-|.|||||.|.+. .|+=|+|++.+..|.
T Consensus 992 V~~r-tLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 992 VVSR-TLNPVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred hhhc-cccchhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 3455 8999999999997543 3678999999999887 699999999988874
No 170
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=82.02 E-value=4 Score=40.77 Aligned_cols=49 Identities=18% Similarity=0.358 Sum_probs=32.3
Q ss_pred CCCCccceeEEEeccc---CCceEEEEEEeCCCCC----CeeEEEEEeecccccCCCc
Q 004579 6 QSNPRWYESFHIYCAH---MASNIIFTVKDDNPIG----ATLIGRAYVPVEEVLGGEE 56 (744)
Q Consensus 6 ~~~P~Wne~F~~~~ah---~~~~l~~~vkd~d~~~----~~~iG~~~ip~~~~~~g~~ 56 (744)
..+|.|||+|.|.+.= ...+|.|++.+-..-. +..||-|.+|+-+ .|.+
T Consensus 69 ~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~--~g~~ 124 (184)
T PF14429_consen 69 NKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD--NGTI 124 (184)
T ss_dssp -SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB---TS-B
T ss_pred CCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee--CCeE
Confidence 6899999999987654 3589999998866432 2699999999887 6764
No 171
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=79.46 E-value=5.1 Score=46.96 Aligned_cols=90 Identities=21% Similarity=0.414 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhCCceEEEEEecCCCCCCCCCchhHHHHHHHHhhhhhhHHHHHHHHHHcCCCCCCCCceEEeecCCcccc
Q 004579 485 LSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVK 564 (744)
Q Consensus 485 la~~ia~a~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~Gv~~~p~~yl~~~~l~~~~~~ 564 (744)
|..+++.|+++|.. |.+|+-...-.+ +..++ +| +++|.++|+.+ +|++
T Consensus 386 IV~ALi~AA~nGKq--VtvlVELkARFD-EE~NI----~W------------Ak~LE~AGvhV-------vyG~------ 433 (696)
T COG0855 386 IVRALIDAAENGKQ--VTVLVELKARFD-EEANI----HW------------AKRLERAGVHV-------VYGV------ 433 (696)
T ss_pred HHHHHHHHHHcCCe--EEEEEEEhhhcC-hhhhh----HH------------HHHHHhCCcEE-------Eecc------
Confidence 57788899999965 555554433222 12222 34 56799999976 3332
Q ss_pred cCCccCCCCCCCCchhHHHHHhhcceeeEeeeeEEEEe-------ceEEEEcCccCCcccccCCCCcceEEEeecC
Q 004579 565 RSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVD-------DEYIIIGSANINQRSMEGARDTEIAMGGYQP 633 (744)
Q Consensus 565 ~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK~mIVD-------D~~~iIGSANin~RS~~g~rDsEi~l~i~d~ 633 (744)
.+ .-+|||+++|= -+|+=+|+-|.|..+-..- |.+++..-|+
T Consensus 434 -----~g--------------------lKtHAKm~lVvRrE~~~lrrY~HlGTGNYn~~TAriY--TD~sl~Tad~ 482 (696)
T COG0855 434 -----VG--------------------LKTHAKMLLVVRREGGKLRRYVHLGTGNYNPKTARLY--TDLSLLTADP 482 (696)
T ss_pred -----cc--------------------eeeeeeEEEEEEecCCcEEEEEEecCCCCCccceeee--eechhccCCH
Confidence 11 47999999984 2799999999999987665 5555554443
No 172
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=79.15 E-value=2.3 Score=47.86 Aligned_cols=43 Identities=28% Similarity=0.567 Sum_probs=31.7
Q ss_pred eEEEEEeeccccc-CCCccceEEecccCCCCCCCCCceEEEEEEee
Q 004579 40 LIGRAYVPVEEVL-GGEEVDKWVEILDEDRNPISSGSKIHVKLQYF 84 (744)
Q Consensus 40 ~iG~~~ip~~~~~-~g~~v~~w~~l~~~~~k~~k~~~~IrV~lqf~ 84 (744)
++|++.||++.++ .|+.+++|||+.+...+.. ..+.+ +.++++
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~-~~~~l-lk~~~~ 44 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSV-GEGLI-IKVSSE 44 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCc-CcceE-EEEEee
Confidence 5899999999965 7899999999998666554 33444 444443
No 173
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=79.07 E-value=3 Score=42.15 Aligned_cols=44 Identities=20% Similarity=0.492 Sum_probs=30.4
Q ss_pred CCCCCccceeEEEeccc---CCceEEEEEEeCCCC-----CCeeEEEEEeec
Q 004579 5 EQSNPRWYESFHIYCAH---MASNIIFTVKDDNPI-----GATLIGRAYVPV 48 (744)
Q Consensus 5 ~~~~P~Wne~F~~~~ah---~~~~l~~~vkd~d~~-----~~~~iG~~~ip~ 48 (744)
+..+|.|||+|.|.+.= ..++|.|+++..-.- ...++|-+.+|+
T Consensus 62 h~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL 113 (196)
T cd08694 62 QVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKL 113 (196)
T ss_pred ecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEee
Confidence 35789999999988643 568999999332110 235677777766
No 174
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=75.06 E-value=4.7 Score=40.62 Aligned_cols=44 Identities=23% Similarity=0.502 Sum_probs=28.6
Q ss_pred CCCCCccceeEEEeccc---CCceEEEEEEeCCCC---CCeeEEEEEeec
Q 004579 5 EQSNPRWYESFHIYCAH---MASNIIFTVKDDNPI---GATLIGRAYVPV 48 (744)
Q Consensus 5 ~~~~P~Wne~F~~~~ah---~~~~l~~~vkd~d~~---~~~~iG~~~ip~ 48 (744)
+..+|.|||+|.|.+.= ...+|.|++...-.- ...++|-+.+|+
T Consensus 62 H~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 62 HNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred cCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 35789999999988653 568999955442211 125566665555
No 175
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=73.95 E-value=8 Score=42.95 Aligned_cols=83 Identities=17% Similarity=0.251 Sum_probs=65.9
Q ss_pred CCCCCCCCCccceeEEEecccC------------CceEEEEEEeCCCCC--CeeEEEEEeecccccCCCccceEEecccC
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM------------ASNIIFTVKDDNPIG--ATLIGRAYVPVEEVLGGEEVDKWVEILDE 66 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~------------~~~l~~~vkd~d~~~--~~~iG~~~ip~~~~~~g~~v~~w~~l~~~ 66 (744)
||+| +..|...|.|-+.+--. --.+.|.|..+-.+- +.|+|.+.|-++.|..--.+...|+|.|
T Consensus 410 vik~-t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~D- 487 (523)
T KOG3837|consen 410 VIKV-TPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKD- 487 (523)
T ss_pred eeeC-CCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccc-
Confidence 6888 99999999999987661 235889998887664 7999999999999987777888999965
Q ss_pred CCCCCCCCceEEEEEEeeccc
Q 004579 67 DRNPISSGSKIHVKLQYFDVT 87 (744)
Q Consensus 67 ~~k~~k~~~~IrV~lqf~p~~ 87 (744)
|+.. .++.+-|.++-|.+-
T Consensus 488 -GRK~-vGGkLevKvRiR~Pi 506 (523)
T KOG3837|consen 488 -GRKA-VGGKLEVKVRIRQPI 506 (523)
T ss_pred -cccc-cCCeeEEEEEEeccc
Confidence 6644 577888877766543
No 176
>PLN02964 phosphatidylserine decarboxylase
Probab=73.41 E-value=1.1 Score=53.08 Aligned_cols=66 Identities=15% Similarity=0.244 Sum_probs=50.8
Q ss_pred CCCCCCCccceeEEEeccc-CCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCc--cceEEecccCCCC
Q 004579 3 KKEQSNPRWYESFHIYCAH-MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEE--VDKWVEILDEDRN 69 (744)
Q Consensus 3 ~n~~~~P~Wne~F~~~~ah-~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~--v~~w~~l~~~~~k 69 (744)
++ +.||+|||.-.|-|.- ...-..|+|+|.+.+. ++++|.+.+.+.++..-+. +..-|.+.+.++.
T Consensus 88 ~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgd 157 (644)
T PLN02964 88 DS-TDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSS 157 (644)
T ss_pred cc-cCCcccchhhceEeccCCcceEEEEEEecCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCC
Confidence 44 9999999987777654 2334599999999988 7999999999988886554 3334788887654
No 177
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=72.29 E-value=12 Score=38.92 Aligned_cols=51 Identities=22% Similarity=0.214 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHhcccEEEEeeccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEecC
Q 004579 433 DRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPM 507 (744)
Q Consensus 433 e~sI~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP~ 507 (744)
..+|.+-..++|++|++.|||..+. +. -.++...|.+|.+|| |.|.+++..
T Consensus 8 ~~~I~~~i~elI~~Ae~eI~is~~~---------~~-------------l~~l~~~L~~a~~rG--V~V~li~~~ 58 (233)
T PF11495_consen 8 RETILERIRELIENAESEIYISIPP---------EF-------------LEELRDELEEAVDRG--VKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHHC-SSEEEEEE-G---------GG-------------HHHHHHHHHHHHHTT---EEEEEESS
T ss_pred HHHHHHHHHHHHHHhheEEEEEcCH---------HH-------------HHHHHHHHHHHHHCC--CEEEEEEeC
Confidence 5688999999999999999998532 11 135677888888999 889999875
No 178
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=68.74 E-value=5 Score=43.31 Aligned_cols=40 Identities=35% Similarity=0.376 Sum_probs=28.4
Q ss_pred eEeeeeEEEE----eceEEEEcCccCCc-ccccCCCCcceEEEeecC
Q 004579 592 IYVHAKMMIV----DDEYIIIGSANINQ-RSMEGARDTEIAMGGYQP 633 (744)
Q Consensus 592 iyvHSK~mIV----DD~~~iIGSANin~-RS~~g~rDsEi~l~i~d~ 633 (744)
+-+|+|+.+. =+.-++|||||+.. =.+. .+=.| +++..|+
T Consensus 79 ~~~HgKlY~f~k~g~~~~a~IGSANfS~~~~~~-~~~~E-~~v~~D~ 123 (296)
T PF09565_consen 79 PPYHGKLYIFSKNGKPFRAYIGSANFSQINGFT-RRQYE-AMVTCDP 123 (296)
T ss_pred CCcccEEEEEecCCCceEEEEeecccccccccc-cccee-EEEecCh
Confidence 4799999999 24689999999988 2221 23378 6665555
No 179
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=68.28 E-value=2.4 Score=37.23 Aligned_cols=58 Identities=17% Similarity=0.397 Sum_probs=42.1
Q ss_pred CCCCCCccceeEEEecccC---CceEEEEEEeCCCCCCeeEEEEEeecccccCCCccceEEec
Q 004579 4 KEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEI 63 (744)
Q Consensus 4 n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~v~~w~~l 63 (744)
..+.||+.+|+|.|.++-. ...|.|+|.. .+-.-..||.+.+.+..+- -+..+-|.++
T Consensus 43 rgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~~RKe~iG~~sL~l~s~g-eeE~~HW~e~ 103 (103)
T cd08684 43 EGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QTPRKRTIGECSLSLRTLS-TQETDHWLEI 103 (103)
T ss_pred cCCCChhHHHHHHHHHHHhhccceEEEEEeec-cCCccceeeEEEeecccCC-HHHhhhhhcC
Confidence 3478999999999998873 4556677766 3333689999999998763 3456666653
No 180
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=65.21 E-value=14 Score=36.80 Aligned_cols=44 Identities=20% Similarity=0.372 Sum_probs=34.2
Q ss_pred CCCccceeEEEeccc---CCceEEEEEEeCCCCC------CeeEEEEEeeccc
Q 004579 7 SNPRWYESFHIYCAH---MASNIIFTVKDDNPIG------ATLIGRAYVPVEE 50 (744)
Q Consensus 7 ~~P~Wne~F~~~~ah---~~~~l~~~vkd~d~~~------~~~iG~~~ip~~~ 50 (744)
.+|.|||+|.|.+.- +..+|.|++.+-..-. ..+||-|.+|+-+
T Consensus 63 k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 63 KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 689999999998643 3689999998866332 4788888888764
No 181
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=58.77 E-value=6.3 Score=45.12 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=26.6
Q ss_pred eeEeeeeEEEEec-------eEEEEcCccCCcccccCC----------CCcceEEEe
Q 004579 591 MIYVHAKMMIVDD-------EYIIIGSANINQRSMEGA----------RDTEIAMGG 630 (744)
Q Consensus 591 ~iyvHSK~mIVDD-------~~~iIGSANin~RS~~g~----------rDsEi~l~i 630 (744)
....|+|+++... .|+++|||||..=.+ |. +..|++|.+
T Consensus 346 ~~~pH~K~y~~~~~~~~~~~~W~~lgShNLS~aAW-G~~~~~~~~l~i~nyElGVl~ 401 (443)
T PF06087_consen 346 RAPPHIKTYMRFSKNDFKSLGWFYLGSHNLSKAAW-GKRSKNGSQLSIRNYELGVLF 401 (443)
T ss_dssp TS-B--EEEEEEE-TTTSEECEEEEES--BSHHHH--EEETTTTCCEESSBEEEEEE
T ss_pred CcCcceEEEEEecCCCCCccceEEeCcccCCHHHh-cccccCCceeeecceEEEEEE
Confidence 4689999999987 699999999975333 33 679999998
No 182
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=57.80 E-value=1e+02 Score=31.11 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHhcccEEEEeeccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEecCC
Q 004579 434 RSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMW 508 (744)
Q Consensus 434 ~sI~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP~~ 508 (744)
.-|+...+..|+.|+.|..+.. |+..+.. ..+...+..+..+| ++++|+....
T Consensus 38 e~il~~Li~~l~k~~ef~IsVa--Fit~sG~------------------sll~~~L~d~~~Kg--vkgkilts~Y 90 (198)
T COG3886 38 EKILPRLIDELEKADEFEISVA--FITESGL------------------SLLFDLLLDLVNKG--VKGKILTSDY 90 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEEE--EeeCccH------------------HHHHHHHHHHhcCC--ceEEEecccc
Confidence 5789999999999999998883 7654210 12334555665566 8999998754
No 183
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=57.54 E-value=22 Score=35.54 Aligned_cols=45 Identities=22% Similarity=0.425 Sum_probs=31.0
Q ss_pred CCCCccceeEEEeccc---CCceEEEEEEeCCCC----C---CeeEEEEEeeccc
Q 004579 6 QSNPRWYESFHIYCAH---MASNIIFTVKDDNPI----G---ATLIGRAYVPVEE 50 (744)
Q Consensus 6 ~~~P~Wne~F~~~~ah---~~~~l~~~vkd~d~~----~---~~~iG~~~ip~~~ 50 (744)
+.+|.|+|+|.|.+-= ...+|-|++++-+.- + ..+||-+.+|+-+
T Consensus 64 nk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 64 NKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred CCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 5789999999998543 457899998874321 1 2567777666643
No 184
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=55.29 E-value=8.6 Score=47.04 Aligned_cols=73 Identities=15% Similarity=0.301 Sum_probs=49.3
Q ss_pred CCCCCCCCcccee-EEEecccCCceEEEEEEeCCCCC-CeeEEEEEeecccccCC----------------------Ccc
Q 004579 2 LKKEQSNPRWYES-FHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGG----------------------EEV 57 (744)
Q Consensus 2 i~n~~~~P~Wne~-F~~~~ah~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g----------------------~~v 57 (744)
|++...-+.|.|+ |++| ..|+|.|.|+|.+. ++++|...+-+.+...| ..|
T Consensus 921 i~kke~~ws~dete~k~p-----~rl~iqiWD~d~fs~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v 995 (1105)
T KOG1326|consen 921 IAKKEYSWSLDETEFKIP-----ARLIIQIWDNDKFSKDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTV 995 (1105)
T ss_pred hhhhhhccccccccccCc-----hheEEEecccCccChhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccc
Confidence 4444445556553 4444 45999999999998 89999999988877643 467
Q ss_pred ceEEecccCCCCCCCCCceEEE
Q 004579 58 DKWVEILDEDRNPISSGSKIHV 79 (744)
Q Consensus 58 ~~w~~l~~~~~k~~k~~~~IrV 79 (744)
.+|.|++...+.+.-..+.+..
T Consensus 996 ~GWwP~~a~~~~~~~l~Gkvem 1017 (1105)
T KOG1326|consen 996 KGWWPCQAEEGDAKVLAGKVEM 1017 (1105)
T ss_pred cccceeeecCCCcceecceeee
Confidence 8999998654333323444433
No 185
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=51.92 E-value=24 Score=34.58 Aligned_cols=45 Identities=18% Similarity=0.244 Sum_probs=34.6
Q ss_pred CCCCccceeEEEecccC----CceEEEEEEeCCCCC-CeeEEEEEeeccc
Q 004579 6 QSNPRWYESFHIYCAHM----ASNIIFTVKDDNPIG-ATLIGRAYVPVEE 50 (744)
Q Consensus 6 ~~~P~Wne~F~~~~ah~----~~~l~~~vkd~d~~~-~~~iG~~~ip~~~ 50 (744)
+..+.|||--.||+.-. .+.|.|+|.|-+..+ ..+||.+.||+=+
T Consensus 57 ~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 57 KNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 35678999877775542 699999999977554 6799999988743
No 186
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=47.83 E-value=25 Score=33.96 Aligned_cols=44 Identities=14% Similarity=0.314 Sum_probs=34.5
Q ss_pred CCCccceeEEEe--cccC--CceEEEEEEeCCCCC---CeeEEEEEeeccc
Q 004579 7 SNPRWYESFHIY--CAHM--ASNIIFTVKDDNPIG---ATLIGRAYVPVEE 50 (744)
Q Consensus 7 ~~P~Wne~F~~~--~ah~--~~~l~~~vkd~d~~~---~~~iG~~~ip~~~ 50 (744)
.++.|||...|+ +.+. .+.|.|+|.+-+..+ ..+||.+.+|+=+
T Consensus 56 ~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 56 TSVTWNEWLTFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred CCCcccceeEccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEc
Confidence 679999998887 4442 689999999876554 4899999988744
No 187
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=43.84 E-value=60 Score=32.66 Aligned_cols=45 Identities=24% Similarity=0.437 Sum_probs=31.8
Q ss_pred CCCCccceeEEEecc---cCCceEEEEEEeCCCC----------CCeeEEEEEeeccc
Q 004579 6 QSNPRWYESFHIYCA---HMASNIIFTVKDDNPI----------GATLIGRAYVPVEE 50 (744)
Q Consensus 6 ~~~P~Wne~F~~~~a---h~~~~l~~~vkd~d~~----------~~~~iG~~~ip~~~ 50 (744)
+.+|.|+|+|-|.+- +...+|-|++.+-..- ...++|-+.+|+-+
T Consensus 66 ~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 66 NQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred CCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 589999999998854 3568999999875421 12567777766654
No 188
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=38.32 E-value=11 Score=46.04 Aligned_cols=56 Identities=20% Similarity=0.404 Sum_probs=47.7
Q ss_pred CCCCCCCCccceeEEEecccC-CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccC
Q 004579 2 LKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDE 66 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~ 66 (744)
|.| +.||+.++-|.+.|.-+ ...+++.|.|.|.++ ++.||..+|-++ .+|+...+.
T Consensus 654 ip~-tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLE--------nR~~T~~~a 711 (1105)
T KOG1326|consen 654 IPN-TLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLE--------NRWLTRHRA 711 (1105)
T ss_pred CcC-CCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhh--------hcccCcCCc
Confidence 567 99999999999999986 589999999999887 899999999876 356666553
No 189
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=36.48 E-value=82 Score=29.90 Aligned_cols=50 Identities=18% Similarity=0.314 Sum_probs=35.6
Q ss_pred CCCccceeEEEe--ccc--CCceEEEEEEeCCCCCC-----eeEEEEEeecccccCCCcc
Q 004579 7 SNPRWYESFHIY--CAH--MASNIIFTVKDDNPIGA-----TLIGRAYVPVEEVLGGEEV 57 (744)
Q Consensus 7 ~~P~Wne~F~~~--~ah--~~~~l~~~vkd~d~~~~-----~~iG~~~ip~~~~~~g~~v 57 (744)
.+|.|||...|+ +.+ ..+.|.|+|..-+.... .+||-+.+|+=+. .|...
T Consensus 32 ~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~-~~~L~ 90 (142)
T PF00792_consen 32 SRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY-RGQLR 90 (142)
T ss_dssp SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T-TSBBE
T ss_pred ccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC-CCccc
Confidence 589999976666 555 26999999988765443 6999999987544 34433
No 190
>COG1489 SfsA DNA-binding protein, stimulates sugar fermentation [General function prediction only]
Probab=35.54 E-value=1e+02 Score=32.09 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.2
Q ss_pred chhHHHHHHHHhhhcCCeEEEEE
Q 004579 185 GDIMLGELLKKKASEGVRVCMLV 207 (744)
Q Consensus 185 ~~~~l~~lL~~aA~rGV~VriLv 207 (744)
.+..+.++|.+|.++||+|+..-
T Consensus 190 ~Dp~fa~~l~~A~~~GVev~~~~ 212 (235)
T COG1489 190 IDPKFAELLREAIKAGVEVLAYR 212 (235)
T ss_pred cCHHHHHHHHHHHHcCCEEEEEE
Confidence 67899999999999999987653
No 191
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=32.18 E-value=93 Score=34.82 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhcccEEEEeeccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEecCC
Q 004579 435 SIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMW 508 (744)
Q Consensus 435 sI~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP~~ 508 (744)
..++...+.|..||+.|+|.+-|.-.. -.|++..|..+++.++.++|-|++...
T Consensus 39 ~fy~~lk~~I~~aq~Ri~lasLYlG~~--------------------E~elv~cl~~aL~~~~~L~v~iLlD~~ 92 (469)
T KOG3964|consen 39 EFYQRLKKLIKKAQRRIFLASLYLGKL--------------------ERELVDCLSNALEKNPSLKVSILLDFL 92 (469)
T ss_pred HHHHHHHHHHHHhhheeeeeeeccchh--------------------HHHHHHHHHHHhccCCCcEEEeehhhh
Confidence 468889999999999999999998521 347889999999999999999998754
No 192
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=30.20 E-value=34 Score=39.19 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=20.3
Q ss_pred eEeeeeEEEE---ec-eEEEEcCccCCccccc
Q 004579 592 IYVHAKMMIV---DD-EYIIIGSANINQRSME 619 (744)
Q Consensus 592 iyvHSK~mIV---DD-~~~iIGSANin~RS~~ 619 (744)
.--|||+||. |+ ..++|.||||-..-+.
T Consensus 100 g~hHsKm~ll~y~~~~lRVvI~TaNl~~~Dw~ 131 (443)
T PF06087_consen 100 GTHHSKMMLLFYEDGSLRVVIPTANLTPYDWN 131 (443)
T ss_dssp --B--EEEEEEETTCEEEEEEESS-BSHHHHC
T ss_pred ccccceeEEEEeCCccEEEEEECCCCCHHHHC
Confidence 4799999999 67 8999999999988773
No 193
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=29.81 E-value=75 Score=31.10 Aligned_cols=44 Identities=14% Similarity=0.262 Sum_probs=31.2
Q ss_pred CCCccceeEEEe--cccC--CceEEEEEEeCCCC-----CCeeEEEEEeeccc
Q 004579 7 SNPRWYESFHIY--CAHM--ASNIIFTVKDDNPI-----GATLIGRAYVPVEE 50 (744)
Q Consensus 7 ~~P~Wne~F~~~--~ah~--~~~l~~~vkd~d~~-----~~~~iG~~~ip~~~ 50 (744)
.+|.|||-..|+ +.+. .+.|.|+|.+-..- ...+||.+.+++=+
T Consensus 53 ~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 53 SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred CCCccceeEEcccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEEC
Confidence 579999987776 4452 68999999985431 13578888887643
No 194
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=29.18 E-value=1.3e+02 Score=37.08 Aligned_cols=62 Identities=23% Similarity=0.421 Sum_probs=46.5
Q ss_pred CCCCCCCccc-eeEEEe--cccCCceEEEEEEeCCCCCCeeEEEEEeecccccCCCccceEEecccCCCCCC
Q 004579 3 KKEQSNPRWY-ESFHIY--CAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPI 71 (744)
Q Consensus 3 ~n~~~~P~Wn-e~F~~~--~ah~~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~ 71 (744)
.| +.||+|| |.|.|. |=-..+-|-|-|.+. |..+||.-.+|++-+.+|= +-+.|-++...|.
T Consensus 747 ~n-~~npvy~eepfvF~KVvLpeLA~lRiavyeE---ggK~ig~RIlpvd~l~~GY---rhv~LRse~Nqpl 811 (1189)
T KOG1265|consen 747 GN-SFNPVYEEEPFVFRKVVLPELASLRIAVYEE---GGKFIGQRILPVDGLNAGY---RHVCLRSESNQPL 811 (1189)
T ss_pred CC-CCCcccccCCcccceecccchhheeeeeecc---CCceeeeeccchhcccCcc---eeEEecCCCCCcc
Confidence 46 9999999 567776 222356799999997 4589999999999999885 3355655666655
No 195
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.38 E-value=37 Score=36.92 Aligned_cols=60 Identities=23% Similarity=0.212 Sum_probs=45.9
Q ss_pred CCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEeccc
Q 004579 3 KKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILD 65 (744)
Q Consensus 3 ~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~ 65 (744)
+| +.||+.||+|.+...|. .-.|.++|+|.+..+ .+.||-...-.- ..|++-+.|+...-
T Consensus 278 K~-t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~--rr~~v~~h~gr~~~ 341 (362)
T KOG1013|consen 278 KK-TLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGY--RRGEVHKHWGRCLF 341 (362)
T ss_pred hc-cCCccccccccccCCccchhcceEEEeecccCCCcCccCCCccccccc--ccchhhcCcccccc
Confidence 45 89999999999988774 368999999999884 688886554332 35778888887654
No 196
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=28.26 E-value=17 Score=42.98 Aligned_cols=64 Identities=22% Similarity=0.126 Sum_probs=42.4
Q ss_pred CCCCCccceeEEEecccCCceEEEEEEeCCCCC-CeeEEEEEeecccccC-CCccceEEecccCCCCC
Q 004579 5 EQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLG-GEEVDKWVEILDEDRNP 70 (744)
Q Consensus 5 ~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~-g~~v~~w~~l~~~~~k~ 70 (744)
++.+|.|||+|++. .+....+.+.|+.+.... +...-.+++-+++... ...-+.|.++ .+.|+.
T Consensus 49 ~~~~~~~~~~F~~~-v~~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~w~~~-~~~g~~ 114 (694)
T KOG0694|consen 49 ELRIPELRETFHVE-VVAGGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRLWVLI-EELGTL 114 (694)
T ss_pred CCCCchhhhheeee-eecCCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhhcccc-ccccce
Confidence 36789999999999 667778999998876443 3444444555555442 2245668886 456553
No 197
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=28.25 E-value=1.1e+02 Score=30.12 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=41.7
Q ss_pred cceeEEEecccCCceEEEEEEeCCCCCCeeEEEEEeecccccCC----CccceEEec
Q 004579 11 WYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGG----EEVDKWVEI 63 (744)
Q Consensus 11 Wne~F~~~~ah~~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g----~~v~~w~~l 63 (744)
-||.|.|.+.+-=..|.+.|..+...++.+|+.++||+-..... +....|+..
T Consensus 66 f~~~f~v~i~~~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~~~~~~~~~~~~~~eF 122 (168)
T PF15625_consen 66 FNEIFNVQITRWPESIKLEIYEKSGLSDRLLAEVFVPVPGSTVHTSTDNVPLEEYEF 122 (168)
T ss_pred ccCEEEEEEecCCCEEEEEEEEccCccceEEEEEEeeCCCCcccccccCCceEeEEE
Confidence 58999999999778999999999888899999999998654422 224455555
No 198
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.40 E-value=36 Score=37.04 Aligned_cols=54 Identities=15% Similarity=0.148 Sum_probs=38.9
Q ss_pred CCCCCCCCccceeEE--EecccCC--ceEEEEEEeCCCCC-CeeEEEEEeecccccCCCc
Q 004579 2 LKKEQSNPRWYESFH--IYCAHMA--SNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEE 56 (744)
Q Consensus 2 i~n~~~~P~Wne~F~--~~~ah~~--~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~ 56 (744)
..| ..||.|||+-. +-....+ -.+.+.|-|++-+. .+.+|+..+++.++.+-+.
T Consensus 137 ~~n-~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~ 195 (362)
T KOG1013|consen 137 TRN-TLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQR 195 (362)
T ss_pred hcc-CcCcceeccceecccccchhhhhhhheeeccCcccccccCcccchhhhhccChhhc
Confidence 357 89999997643 3343333 34556777888776 7999999999999986543
No 199
>TIGR00230 sfsA sugar fermentation stimulation protein. probable regulatory factor involved in maltose metabolism contains a putative DNA binding domain. Isolated as a gene which enabled E.coli strain MK2001 to use maltose.
Probab=25.79 E-value=1.7e+02 Score=30.57 Aligned_cols=55 Identities=15% Similarity=0.170 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEE
Q 004579 147 WEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLV 207 (744)
Q Consensus 147 ~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLv 207 (744)
.+.+.++.++ .+. .|..-...++..-+++.. ..+..+.++|.+|.+.||+|..+-
T Consensus 159 L~eL~~l~~~-~ra-~vlF~vqr~d~~~f~p~~----~~Dp~fa~~l~~A~~~GVev~a~~ 213 (232)
T TIGR00230 159 LRELEEILKE-SRA-VVLFVVALPSVRAFSPNR----EGDEEYYRLLRRAHEAGVEVRPYQ 213 (232)
T ss_pred HHHHHHHHHh-CCE-EEEEEEeCCCCCEEeeCc----ccCHHHHHHHHHHHHCCCEEEEEE
Confidence 4556665555 333 333223333333333322 256799999999999999998764
No 200
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=24.84 E-value=1.2e+02 Score=27.60 Aligned_cols=58 Identities=21% Similarity=0.383 Sum_probs=39.3
Q ss_pred ceEEEEEEeCCC---CC-CeeEEEEEeecccccC--------------CCccceEEecccCCCCCCCCCceEEEEEEee
Q 004579 24 SNIIFTVKDDNP---IG-ATLIGRAYVPVEEVLG--------------GEEVDKWVEILDEDRNPISSGSKIHVKLQYF 84 (744)
Q Consensus 24 ~~l~~~vkd~d~---~~-~~~iG~~~ip~~~~~~--------------g~~v~~w~~l~~~~~k~~k~~~~IrV~lqf~ 84 (744)
..|.+.+++--. .. ..+||.+.|++.+.+. -..+.+-|+|.++.|++. +.|.+.++-.
T Consensus 29 ~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~~~---G~I~l~iRLs 104 (112)
T PF14924_consen 29 FPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGNPV---GEISLYIRLS 104 (112)
T ss_pred CceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCcee---eeEEEEEEEe
Confidence 455555554432 23 5899999999988862 125778899998888854 6676665543
No 201
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=22.93 E-value=67 Score=40.57 Aligned_cols=63 Identities=16% Similarity=0.251 Sum_probs=50.3
Q ss_pred CCCCCCCCCccceeEE---EecccC-CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecc
Q 004579 1 MLKKEQSNPRWYESFH---IYCAHM-ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEIL 64 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~---~~~ah~-~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~ 64 (744)
|+.. +.||..||... ||.... ..+|.++|-..+..- ..++|.+.||+.++---+..-+||+|-
T Consensus 1567 vvrk-t~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1567 VVRK-TRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred cccc-cCCCchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeecc
Confidence 3455 89999999876 445553 378999999988776 789999999999997566666999983
No 202
>PF03749 SfsA: Sugar fermentation stimulation protein; InterPro: IPR005224 The sugar fermentation stimulation protein is a probable regulatory factor involved in maltose metabolism. It contains a putative DNA-binding domain, and was isolated as a gene which enabled Escherichia coli W3110 (strain MK2001) to use maltose [].
Probab=21.96 E-value=2.7e+02 Score=28.71 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=20.3
Q ss_pred chhHHHHHHHHhhhcCCeEEEEE
Q 004579 185 GDIMLGELLKKKASEGVRVCMLV 207 (744)
Q Consensus 185 ~~~~l~~lL~~aA~rGV~VriLv 207 (744)
.+..+.++|.+|++.||+|+.+-
T Consensus 179 ~Dp~fa~~l~~A~~~GV~v~a~~ 201 (215)
T PF03749_consen 179 IDPEFAEALREAAEAGVEVLAYR 201 (215)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEE
Confidence 46799999999999999998764
No 203
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=21.80 E-value=1.4e+02 Score=29.70 Aligned_cols=28 Identities=14% Similarity=0.508 Sum_probs=21.5
Q ss_pred CCCccceeEEEe--cccC--CceEEEEEEeCC
Q 004579 7 SNPRWYESFHIY--CAHM--ASNIIFTVKDDN 34 (744)
Q Consensus 7 ~~P~Wne~F~~~--~ah~--~~~l~~~vkd~d 34 (744)
.++.|||...|+ +.+. .+.|.|+|.+-.
T Consensus 55 ~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 55 NDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 568999987775 5552 689999998754
No 204
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=21.74 E-value=1.1e+02 Score=27.36 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=36.0
Q ss_pred CCCccceeEEEecccCCceEEEEEEeCCCCCCeeEEEEEeecccccC
Q 004579 7 SNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLG 53 (744)
Q Consensus 7 ~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~ 53 (744)
.+..|+|+|.|.+. -+-||+|.|.=.|. ..+=|..++-+|+...
T Consensus 31 s~q~WDQ~Fti~Ld-RsRELEI~VywrD~--RslCav~~lrLEd~~~ 74 (98)
T cd08687 31 SNQAWDQSFTLELE-RSRELEIAVYWRDW--RSLCAVKFLKLEDERH 74 (98)
T ss_pred ccccccceeEEEee-cccEEEEEEEEecc--hhhhhheeeEhhhhcc
Confidence 46789999999996 66789999987776 5777888999998543
No 205
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=20.06 E-value=4.6e+02 Score=23.89 Aligned_cols=74 Identities=7% Similarity=0.114 Sum_probs=38.9
Q ss_pred CCCCccceeEEEec--ccC------CceEEEEEEeCCCCCCeeEEEEEeeccccc--CCCccceEEecccCCCCCCCCCc
Q 004579 6 QSNPRWYESFHIYC--AHM------ASNIIFTVKDDNPIGATLIGRAYVPVEEVL--GGEEVDKWVEILDEDRNPISSGS 75 (744)
Q Consensus 6 ~~~P~Wne~F~~~~--ah~------~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~--~g~~v~~w~~l~~~~~k~~k~~~ 75 (744)
+.+|..|-+=++.| .+. ...+.+.+-..-......||.+.|++.+++ .|+.+-.-..+++.+|+. .+
T Consensus 20 G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~i~~~~~l~g~~~~~---~g 96 (107)
T PF11618_consen 20 GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGERIHGSATLVGVSGED---FG 96 (107)
T ss_dssp SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--EEEEEEE-BSSS-T---SE
T ss_pred CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCceEEEEEEEeccCCCe---EE
Confidence 56777775444433 331 345555555544223589999999999999 455788888998877773 46
Q ss_pred eEEEEEE
Q 004579 76 KIHVKLQ 82 (744)
Q Consensus 76 ~IrV~lq 82 (744)
.+...++
T Consensus 97 ~l~y~~r 103 (107)
T PF11618_consen 97 TLEYWIR 103 (107)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 6666554
Done!