Query 004579
Match_columns 744
No_of_seqs 455 out of 2660
Neff 7.0
Searched_HMMs 29240
Date Tue Mar 26 17:45:36 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004579.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1882-1885//hhsearch_pdb/004579hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v0w_A Phospholipase D; hydrol 1.0 1 1 315.6 26.2 365 144-635 65-475 (506)
2 3hsi_A Phosphatidylserine synt 1.0 1 1 288.6 20.0 358 112-655 24-417 (458)
3 1xdp_A Polyphosphate kinase; P 1.0 1 1 204.1 19.3 273 144-634 346-631 (687)
4 2o8r_A Polyphosphate kinase; s 1.0 1 1 186.3 22.7 274 143-635 350-638 (705)
5 4ggj_A Mitochondrial cardiolip 1.0 1 1 132.3 12.7 133 145-367 46-179 (196)
6 4gel_A Mitochondrial cardiolip 1.0 1 1 123.0 10.2 154 141-367 54-211 (220)
7 1byr_A Protein (endonuclease); 1.0 1 1 121.6 12.3 46 146-207 15-60 (155)
8 4ggj_A Mitochondrial cardiolip 1.0 1 1 119.4 9.4 133 434-657 45-177 (196)
9 1xdp_A Polyphosphate kinase; P 1.0 1 1 117.9 10.1 133 437-656 349-493 (687)
10 1byr_A Protein (endonuclease); 1.0 1 1 117.0 10.4 135 433-656 12-147 (155)
No 1
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=1.00 E-value=1 Score=315.56 Aligned_cols=365 Identities=18% Similarity=0.133 Sum_probs=211.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECC-CCCEEEEECCCCCCCCCHHHHHHHHHHHHHCC--CEEEEEEECCCCCCCCCCCC
Q ss_conf 3379999999981263899999524-75047750899999994128999999964369--86999982887531010125
Q 004579 144 HRCWEDIFDAITNARHMIYITGWSV-YTEISLVRDSRRPKPGGDIMLGELLKKKASEG--VRVCMLVWDDRTSVSLLKKD 220 (744)
Q Consensus 144 ~~~~~~i~~aI~~Ak~~I~I~~w~~-~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~rG--V~VriLvwD~~~s~~~~~~~ 220 (744)
.++|++++++|++|+++|+|++|++ .+ +. .+.+|.++|++||+|| |+||||+ |..++....
T Consensus 65 ~~~~~~l~~~I~~Ak~~I~i~~y~~~~~-------d~-----~g~~i~~aL~~aa~rGp~V~Vril~-D~~g~~~~~--- 128 (506)
T 1v0w_A 65 KRLLAKMTENIGNATRTVDISTLAPFPN-------GA-----FQDAIVAGLKESAAKGNKLKVRILV-GAAPVYHMN--- 128 (506)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEEESSCCC-------HH-----HHHHHHHHHHHHHHTTCCEEEEEEE-ECCC--CCC---
T ss_pred HHHHHHHHHHHHHHCCEEEEEEEECCCC-------CH-----HHHHHHHHHHHHHHCCCCCEEEEEE-ECCCCCCCC---
T ss_conf 9999999999997334999999621279-------73-----8999999999998579975899998-376334555---
Q ss_pred CCCCCCCHHHHHHHCCCCCE------EEECCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCC
Q ss_conf 65678948889876189938------997489999999611210034333571008997399999997665347998552
Q 004579 221 GLMATHDEETEKFFQGTDVH------CILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGI 294 (744)
Q Consensus 221 g~~~t~~~~~~~~l~~~gV~------v~~~~r~p~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~ 294 (744)
..+..+.+.|+..|++ +....... ....+.+||+|++|||++ ++|+||+
T Consensus 129 ----~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~----------~~~~~~r~H~K~~ViD~~-----------~a~~Gg~ 183 (506)
T 1v0w_A 129 ----VIPSKYRDELTAKLGKAAENITLNVASMTT----------SKTAFSWNHSKILVVDGQ-----------SALTGGI 183 (506)
T ss_dssp ----CHHHHHHHHHHHHHGGGGGGEEEEEEEECS----------BTTTTBCBCCCEEEETTT-----------EEEEESC
T ss_pred ----CCCHHHHHHHHHCCCCEEECCCCCCCCCCC----------CCCCCCCCEEEEEEECCC-----------EEEEECC
T ss_conf ----687999999985155311057621133323----------688521220269998786-----------8996045
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHCCC--CCC-
Q ss_conf 26898778988664445666688999899999987678999987154233351827999999999999872498--532-
Q 004579 295 DLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGK--DVL- 371 (744)
Q Consensus 295 dl~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~ri~Gpaa~dl~~~F~~rW~~~~~~--~~~- 371 (744)
|+++++|.+. ..+|||++++++||+|.+++..|.++|+..... ...
T Consensus 184 Nl~~d~y~~~-------------------------------~~~~~D~~v~i~G~~v~~l~~~F~~~W~~~~~~~~~~~~ 232 (506)
T 1v0w_A 184 NSWKDDYLDT-------------------------------THPVSDVDLALTGPAAGSAGRYLDTLWTWTCQNKSNIAS 232 (506)
T ss_dssp CCCHHHHTSS-------------------------------SSCCBEEEEEEESHHHHHHHHHHHHHHHHHHHTTTSTTT
T ss_pred CCCCCCCCCC-------------------------------CCCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 3674100357-------------------------------898058899997878999999999997664066677566
Q ss_pred ---CCC---CCCCCC---CCCCCCCCCCCCCCCCE--------EEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCC---
Q ss_conf ---332---234777---79999998899999831--------2553024678566789994788660343489976---
Q 004579 372 ---VHL---RELGDI---IIPPSPVMYPDDHDTWN--------VQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNI--- 431 (744)
Q Consensus 372 ---~~~---~~~~~~---~~p~~~~~~~~~~~~~~--------vQi~rS~~~~~~~~~p~~~~~~~~~~l~~g~~~~--- 431 (744)
... ..++.. ..|.. .+ ..+... +|++++.+......+ .+. +....+++..+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~p~~---~~-~~~~~~~~~~~~~~~~i~~~~P~~~~~~~--~w~-~~~~~~~~d~P~~~~~ 305 (506)
T 1v0w_A 233 VWFAASGNAGCMPTMHKDTNPKA---SP-ATGNVPVIAVGGLGVGIKDVDPKSTFRPD--LPT-ASDTKCVVGLHDNTNA 305 (506)
T ss_dssp EEEEESTTCCCCTTHHHHHSCSS---CC-CCSSEEEEEEECCCSSSCSCCTTCCCCCC--CCC-CSSSCSSTTCCCTTTS
T ss_pred HCCCCCCCCCCCCHHCCCCCCCC---CC-CCCCCCCEECCCCCCEEECCCCCCCCCCC--CCC-CCCCEEECCCCCCCCC
T ss_conf 31466654445700023457656---76-55666300124544100047861001456--754-3431000256555667
Q ss_pred -----CHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf -----415999999999995024799952234556445566899830021003346999999999988199619999924
Q 004579 432 -----IDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVP 506 (744)
Q Consensus 432 -----~e~sI~~ayl~aI~~A~~~IyIEnqYFi~~~~~w~~~~~~~~~~~~~n~i~~~la~~i~~a~~~g~~~~V~IvlP 506 (744)
.+.++..+|+++|.+|+++|||++|||.+-.. |.. .....+..+|.+|+++| |+|.||+|
T Consensus 306 ~~~~~~~~~~~~~~~~~I~~A~~~I~I~tq~~~pyf~--p~~-----------~~~~~i~~aL~~Aa~rG--V~VrIl~~ 370 (506)
T 1v0w_A 306 DRDYDTVNPEESALRALVASAKGHIEISQQDLNATCP--PLP-----------RYDIRLYDALAAKMAAG--VKVRIVVS 370 (506)
T ss_dssp CHHHHHHCHHHHHHHHHHHTCSSEEEEEESCSSCCTT--TSC-----------SCCHHHHHHHHHHHHTT--CEEEEEEC
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCC--CCC-----------CCHHHHHHHHHHHHHCC--CCEEEEEC
T ss_conf 6554444638999999985758679999636544006--753-----------21089999999998689--80899958
Q ss_pred CCCCCCCCCCHHHHHHHHHH-HHHHHHHHH-----HHHHHHHCCCCC---CCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999832689999887-643326999-----999999869998---987832884327721125776677999999
Q 004579 507 MWPEGFPESGSVQAILDWQR-RTMDMMYKD-----VVQALRAKGIME---DPRNYLTFFCLGNREVKRSGEYEPAERPED 577 (744)
Q Consensus 507 ~~peg~~~~~~~~~i~~~~~-rt~~~~~~~-----i~~~L~~~gi~~---~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~ 577 (744)
..++... +.++. ..+..+... ....|.+.|+.. .+...+.++.++.... ++|..
T Consensus 371 ~~~~~~~--------~~~a~~~~~~~L~~~~~~l~~gv~ll~~g~~e~~~~~~~~l~i~~~~~~~~---~~~~~------ 433 (506)
T 1v0w_A 371 DPANRGA--------VGSGGYSQIKSLSEISDTLRNRLANITGGQQAAKTAMCSNLQLATFRSSPN---GKWAD------ 433 (506)
T ss_dssp CGGGCC--------------CCCCSCTHHHHHHHHHHHHHHHTSHHHHHHHHHHHEEEEECCSSSS---SSCTT------
T ss_pred CCCCHHH--------HHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCHHCCCCCCCEEEEECCCCCC---CCCCC------
T ss_conf 9884177--------777678878888775442201200103562000014566604542035676---44446------
Q ss_pred CHHHHHHHHHCCEEEEEEEEEEEEECEEEEECCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 6068999862020168665599992129997175577564458998421898526875
Q 004579 578 DSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYH 635 (744)
Q Consensus 578 ~~~~~~~~~~~~~~iyvHSK~mIVDD~~~iIGSANiN~RSm~g~rDsEi~i~i~d~~~ 635 (744)
....++|+|+|||||++++|||+|||.||| +|+++.++++..
T Consensus 434 -----------~~~~~lHaK~~vvD~~~~~vGS~N~d~rS~-----~E~~l~i~~~~~ 475 (506)
T 1v0w_A 434 -----------GHPYAQHHKLVSVDSSTFYIGSKNLYPSWL-----QDFGYIVESPEA 475 (506)
T ss_dssp -----------SCCCCBCCEEEEETTTEEEEESCCSSCCCS-----BCEEEEEECHHH
T ss_pred -----------CCCCCCEEEEEEECCCEEEEECCCCCCCCH-----HHCEEEECCHHH
T ss_conf -----------765641577999878589973787897235-----350557628999
No 2
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=1.00 E-value=1 Score=288.61 Aligned_cols=358 Identities=16% Similarity=0.085 Sum_probs=217.1
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 24972467034568998899633589962470337999999998126389999952475047750899999994128999
Q 004579 112 RKGCKVSLYQDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGE 191 (744)
Q Consensus 112 r~G~~v~ly~d~~~~~~~~p~~~~~~g~~y~~~~~~~~i~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~ 191 (744)
..||.++++.++ .++|+++.++|.+|+++|+|++|.|.+ +. .+..+.+
T Consensus 24 ~~~n~v~~l~~g--------------------~~~~~~l~~~I~~A~~~I~i~~~~~~~-------d~-----~g~~l~~ 71 (458)
T 3hsi_A 24 LQAEQIEFLGSS--------------------AEFKTQIIELIRNAKKRIYVTALYWQK-------DE-----AGQEILD 71 (458)
T ss_dssp CCGGGEEECCCH--------------------HHHHHHHHHHHHTCSSEEEEEESCBCS-------SH-----HHHHHHH
T ss_pred CCCCEEEEEECH--------------------HHHHHHHHHHHHHCCCEEEEEEEEEEC-------CC-----HHHHHHH
T ss_conf 548869999388--------------------999999999998408889999999725-------92-----7999999
Q ss_pred HHHHHHHC--CCEEEEEEECCCCCCC-CCCCCCCCCCC-CHHHHHHHCCCC--CEEE--ECCCCCCCCCCCEEEECCCCC
Q ss_conf 99996436--9869999828875310-10125656789-488898761899--3899--748999999961121003433
Q 004579 192 LLKKKASE--GVRVCMLVWDDRTSVS-LLKKDGLMATH-DEETEKFFQGTD--VHCI--LCPRNPDDGGSFIQDIQISAM 263 (744)
Q Consensus 192 lL~~kA~r--GV~VriLvwD~~~s~~-~~~~~g~~~t~-~~~~~~~l~~~g--V~v~--~~~r~p~~~~~~~~~~~~~~~ 263 (744)
+|.+||+| ||+||||+ |+..... .+.. .... +......|.++| |+|. ++. .|.. .....
T Consensus 72 aL~~aa~r~~GV~Vril~-D~~~~~r~~~g~---~~~~~~~~~~~~L~~~g~nv~v~~~~f~-~p~~--------~~~~~ 138 (458)
T 3hsi_A 72 EIYRVKQENPHLDVKVLI-DWHRAQRNLLGA---EKSATNADWYCEQRQTYQLPDDPNMFFG-VPIN--------TREVF 138 (458)
T ss_dssp HHHHHHHHSTTCEEEEEE-ETTGGGSCCC--------CCHHHHHHHHHHHHTCTTCCCCEEE-ECSS--------SSGGG
T ss_pred HHHHHHHCCCCCEEEEEE-ECCCCCCCCCCC---CCCCCCHHHHHHHHHHCCCCEEEEEECC-CCCC--------CCCCC
T ss_conf 999998558998799999-776564444565---5556668999999850899569550028-8544--------34014
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 35710089973999999976653479985522689877898866444566668899989999998767899998715423
Q 004579 264 FTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIH 343 (744)
Q Consensus 264 ~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~dl~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~ 343 (744)
+++|+|++|||++ + ++||+|+.+.++... .....|+|+.
T Consensus 139 ~r~H~Ki~viD~~-----------v-~~~G~Ni~d~y~~~~-----------------------------~~~~~drd~~ 177 (458)
T 3hsi_A 139 GVLHVKGFVFDDT-----------V-LYSGASINNVYLHQF-----------------------------EKYRYDRYQK 177 (458)
T ss_dssp CCEECCEEEETTE-----------E-EEESCCBSTTTTTCS-----------------------------SCCEECCEEE
T ss_pred CCCEEEEEEECCC-----------E-EEEEEECCHHHHCCC-----------------------------CCCCCCHHHH
T ss_conf 7111159998898-----------8-998113678984678-----------------------------6457522556
Q ss_pred EEEECHHHHHHHHHHHH--HHHHHCCCCCCCCCC-C-CCCC---------CCCCCCCCCCC-CCCCCEEEEEECCCCCCC
Q ss_conf 33518279999999999--998724985323322-3-4777---------79999998899-999831255302467856
Q 004579 344 SRLEGPIAWDVLFNFEQ--RWRKQGGKDVLVHLR-E-LGDI---------IIPPSPVMYPD-DHDTWNVQLFRSIDGGAA 409 (744)
Q Consensus 344 ~ri~Gpaa~dl~~~F~~--rW~~~~~~~~~~~~~-~-~~~~---------~~p~~~~~~~~-~~~~~~vQi~rS~~~~~~ 409 (744)
+.||.+.|....|.+ .|+...-..+..... . -.+. +.+.....++. ..+...+|+...
T Consensus 178 --i~g~~~~D~~~~~~~~~~~~g~~v~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~p~------ 249 (458)
T 3hsi_A 178 --ITHAELADSMVNFINDYLLDFSAVYPLDVTNRPRTKEIRGNIRAYRKDLAQNGEYSLKSAVKLPNVLSVSPL------ 249 (458)
T ss_dssp --EECHHHHHHHHHHHHHTTCCTTTCEESSSSCCCCGGGTHHHHHHHHHHHHHHCCCCCSSCBSSCSSCEEEEE------
T ss_pred --HCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECC------
T ss_conf --528168899999987640167421114777425405667778999986310113566555788762999607------
Q ss_pred CCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHH
Q ss_conf 67899947886603434899764159999999999950247999522345564455668998300210033469999999
Q 004579 410 FGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKI 489 (744)
Q Consensus 410 ~~~p~~~~~~~~~~l~~g~~~~~e~sI~~ayl~aI~~A~~~IyIEnqYFi~~~~~w~~~~~~~~~~~~~n~i~~~la~~i 489 (744)
.+++ ..+..+..+|+++|.+|+++|||+++||+++ ..+..+|
T Consensus 250 ----------------~~~~-~~~~~i~~~~~~lI~~A~~~I~I~tpYf~p~---------------------~~~~~aL 291 (458)
T 3hsi_A 250 ----------------FGLG-ASGNELNQVIEDLFLQVQKKLVICTPYFNFP---------------------RTLQHKI 291 (458)
T ss_dssp ----------------EEES-SSSCHHHHHHHHHHHTCSSEEEEECSSSCCC---------------------HHHHHHH
T ss_pred ----------------CCCC-CCHHHHHHHHHHHHHHCCCEEEEEEECCCCC---------------------HHHHHHH
T ss_conf ----------------7889-7315899999999983465899998234799---------------------9999999
Q ss_pred HHHHHHCCCEEEEEEECCCC--CCC--CCCCHHHHHHHHHHHHHHHHHHH-------HHHHHHHCC---CCCCCCCCEEE
Q ss_conf 99988199619999924999--999--99832689999887643326999-------999999869---99898783288
Q 004579 490 VSKIEAGERFTVYIVVPMWP--EGF--PESGSVQAILDWQRRTMDMMYKD-------VVQALRAKG---IMEDPRNYLTF 555 (744)
Q Consensus 490 ~~a~~~g~~~~V~IvlP~~p--eg~--~~~~~~~~i~~~~~rt~~~~~~~-------i~~~L~~~g---i~~~p~~yl~~ 555 (744)
..|+++| ++|.|++|... ++. ++.. ++.+..+. ..|.. -++.|.++| +++
T Consensus 292 ~~Aa~rG--V~VrIi~~~~~and~y~~~~~~----~~~~~~~~--~lye~~~~~f~~~~~~l~~~G~i~V~i-------- 355 (458)
T 3hsi_A 292 ATLLENG--KRVEIIVGDKVANDFYIPPEQP----FKMAGALP--YLYESNLRRFCEKFETQIESGQLVVRL-------- 355 (458)
T ss_dssp HHHHTTT--CEEEEEEECGGGSTTCCCTTSC----CCGGGGHH--HHHHHHHHHHHHHTHHHHHHTSEEEEE--------
T ss_pred HHHHHCC--CEEEEEECCCCCCCCCCCCCCH----HHHHCCHH--HHHHHHHHHHHHHHHHHHHCCCEEEEE--------
T ss_conf 9998779--8299998982115776677633----44530258--898876666677789998579828999--------
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEEEEEEEECEEEEECCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 43277211257766779999996068999862020168665599992129997175577564458998421898526875
Q 004579 556 FCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYH 635 (744)
Q Consensus 556 ~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK~mIVDD~~~iIGSANiN~RSm~g~rDsEi~i~i~d~~~ 635 (744)
++|.+ .++|+|+|+|||++++|||+|+|.||+.. |+|+++.++++..
T Consensus 356 -----------~~~~~--------------------~~lHaK~~vvD~~~~~vGS~N~d~RS~~l--N~E~~~~i~~~~~ 402 (458)
T 3hsi_A 356 -----------WRDGD--------------------NTYHLKGVWVDDRYILLTGNNLNPRAWRL--DAENGLLIYDPQQ 402 (458)
T ss_dssp -----------ECBTT--------------------BEECCCEEEETTTEEEEECCCCSHHHHHT--CEEEEEEEECTTC
T ss_pred -----------EECCC--------------------CCEEEEEEEECCEEEEECCCCCCCCHHHH--CCEEEEEEECCCH
T ss_conf -----------80599--------------------85467799998738995388798003540--8435899957858
Q ss_pred CCCCCCCCCHHHHHHHHHHH
Q ss_conf 46778743209999999999
Q 004579 636 LSTRVPARGQIHGFRMSLWY 655 (744)
Q Consensus 636 ~~~~~~~~~~~~~lR~~Lw~ 655 (744)
. ...+....-.++|.
T Consensus 403 ~-----l~~~l~~~f~~~~~ 417 (458)
T 3hsi_A 403 Q-----LLAQVEKEQNQIRQ 417 (458)
T ss_dssp S-----SHHHHHHHHHHHHT
T ss_pred H-----HHHHHHHHHHHHHH
T ss_conf 9-----99999999999997
No 3
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=1.00 E-value=1 Score=204.12 Aligned_cols=273 Identities=16% Similarity=0.165 Sum_probs=182.2
Q ss_pred HHHHHHHHHHHHHCCC-----EEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCC
Q ss_conf 3379999999981263-----89999952475047750899999994128999999964369869999828875310101
Q 004579 144 HRCWEDIFDAITNARH-----MIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLK 218 (744)
Q Consensus 144 ~~~~~~i~~aI~~Ak~-----~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~~ 218 (744)
...|+.+.+.|.+|++ +|+|+.|.+.+ +..+.++|++||++||+|+||+ |..+... .
T Consensus 346 ~~sf~~v~~~I~~A~~dp~v~~I~it~Y~~~~---------------d~~I~~AL~~AA~rGV~VrVLv-d~~a~~~--~ 407 (687)
T 1xdp_A 346 YHTFEHVLELLRQASFDPSVLAIKINIYRVAK---------------DSRIIDSMIHAAHNGKKVTVVV-ELQARFD--E 407 (687)
T ss_dssp TBCTHHHHHHHHHHHHCTTEEEEEEEESSCCT---------------TCHHHHHHHHHHHTTCEEEEEE-CTTCSST--T
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEEEEECC---------------CHHHHHHHHHHHHCCCEEEEEE-CCCCCCC--H
T ss_conf 56401579999987538762189998546328---------------6799999999986599899998-8976421--4
Q ss_pred CCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 25656789488898761899389974899999996112100343335710089973999999976653479985522689
Q 004579 219 KDGLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCD 298 (744)
Q Consensus 219 ~~g~~~t~~~~~~~~l~~~gV~v~~~~r~p~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~dl~~ 298 (744)
. .+..+.+.|..+||++..+.+ .++.|+|++|||++..+. -+-.+|+||.|+..
T Consensus 408 ~------~n~~~~~~L~~aGV~V~~~~~----------------~~k~H~Ki~VID~re~~~----i~~~a~iGS~N~d~ 461 (687)
T 1xdp_A 408 E------ANIHWAKRLTEAGVHVIFSAP----------------GLKIHAKLFLISRKENGE----VVRYAHIGTGNFNE 461 (687)
T ss_dssp T------TTTTTTHHHHHHTCEEEECCT----------------TCEECCEEEEEEEEETTE----EEEEEEEESSCSCT
T ss_pred H------HHHHHHHHHHHCCCEEEEECC----------------CCCCCCEEEEEEECCCCE----EEEEEEEECCCCCC
T ss_conf 6------579999999978989999258----------------866302699998215880----78999996886880
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECH-HHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 877898866444566668899989999998767899998715423335182-7999999999999872498532332234
Q 004579 299 GRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGP-IAWDVLFNFEQRWRKQGGKDVLVHLREL 377 (744)
Q Consensus 299 ~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~ri~Gp-aa~dl~~~F~~rW~~~~~~~~~~~~~~~ 377 (744)
..+ ..|+|+++.+.|| ++.++...|...|........
T Consensus 462 rs~-----------------------------------~~n~D~~l~i~~~~i~~~l~~~F~~~~~~s~~~~~------- 499 (687)
T 1xdp_A 462 KTA-----------------------------------RLYTDYSLLTADARITNEVRRVFNFIENPYRPVTF------- 499 (687)
T ss_dssp TGG-----------------------------------GTEEEEEEEECCHHHHHHHHHHHHHHHCTTSCCCC-------
T ss_pred CHH-----------------------------------HHCCEEEEEEECHHHHHHHHHHHHHHHHHCCCCCH-------
T ss_conf 525-----------------------------------24123799981889999999999999734544346-------
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC----EEEE
Q ss_conf 777799999988999998312553024678566789994788660343489976415999999999995024----7999
Q 004579 378 GDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKN----FIYI 453 (744)
Q Consensus 378 ~~~~~p~~~~~~~~~~~~~~vQi~rS~~~~~~~~~p~~~~~~~~~~l~~g~~~~~e~sI~~ayl~aI~~A~~----~IyI 453 (744)
. +++.+ |. .....+...+...|..|++ +|+|
T Consensus 500 ----------------~----~l~~s---------P~----------------~~~~~l~~~I~~ei~~A~~g~~~~I~i 534 (687)
T 1xdp_A 500 ----------------D----YLMVS---------PQ----------------NSRRLLYEMVDREIANAQQGLPSGITL 534 (687)
T ss_dssp ----------------S----SCEEE---------TT----------------SHHHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred ----------------H----HEEEC---------CC----------------HHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf ----------------6----50648---------82----------------066789999999999987289988999
Q ss_pred EECCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 52234556445566899830021003346999999999988199619999924999999998326899998876433269
Q 004579 454 ENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMY 533 (744)
Q Consensus 454 EnqYFi~~~~~w~~~~~~~~~~~~~n~i~~~la~~i~~a~~~g~~~~V~IvlP~~peg~~~~~~~~~i~~~~~rt~~~~~ 533 (744)
.+.|+. +. .+..+|..|.++| |+|.|++...-.-.
T Consensus 535 ~~~~lp-------D~---------------~ii~AL~~Aa~rG--V~VrLivrg~c~l~--------------------- 569 (687)
T 1xdp_A 535 KLNNLV-------DK---------------GLVDRLYAASSSG--VPVNLLVRGMCSLI--------------------- 569 (687)
T ss_dssp EESCBC-------CH---------------HHHHHHHHHHHTT--CCEEEEESSCBCBC---------------------
T ss_pred EECCCC-------CH---------------HHHHHHHHHHHCC--CEEEEEEECCCCCC---------------------
T ss_conf 938989-------99---------------9999999999879--98999996631357---------------------
Q ss_pred HHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEEEEEEE---ECEEEEECC
Q ss_conf 99999999869998987832884327721125776677999999606899986202016866559999---212999717
Q 004579 534 KDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIV---DDEYIIIGS 610 (744)
Q Consensus 534 ~~i~~~L~~~gi~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK~mIV---DD~~~iIGS 610 (744)
.|+.-.+ +-+.+.. +.+ + ..-|+|+... ||+++.|||
T Consensus 570 ---------pgvp~~s-dni~V~s-----------~~~-----------------r--~Leh~rI~~f~~~dd~~~~IGS 609 (687)
T 1xdp_A 570 ---------PNLEGIS-DNIRAIS-----------IVD-----------------R--YLEHDRVYIFENGGDKKVYLSS 609 (687)
T ss_dssp ---------TTCTTTS-TTEEEEE-----------ECS-----------------S--SEECCCEEEECGGGSCEEEEES
T ss_pred ---------CCCCCCC-CCEEEEE-----------EHH-----------------H--HHHCCEEEEECCCCCCEEEEEC
T ss_conf ---------8999998-7779987-----------056-----------------7--8647739999289987899985
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 557756445899842189852687
Q 004579 611 ANINQRSMEGARDTEIAMGGYQPY 634 (744)
Q Consensus 611 ANiN~RSm~g~rDsEi~i~i~d~~ 634 (744)
|||+.|||..| .|+++.++|+.
T Consensus 610 AN~d~Rsl~~n--~Ev~~~I~d~~ 631 (687)
T 1xdp_A 610 ADWMTRNIDYR--IEVATPLLDPR 631 (687)
T ss_dssp CCBSHHHHHSE--EEEEEECCSHH
T ss_pred CCCCHHHHHHH--EEEEEEECCHH
T ss_conf 74522225442--44557965999
No 4
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=1.00 E-value=1 Score=186.32 Aligned_cols=274 Identities=14% Similarity=0.150 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHHHCCC-----EEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC
Q ss_conf 03379999999981263-----8999995247504775089999999412899999996436986999982887531010
Q 004579 143 PHRCWEDIFDAITNARH-----MIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLL 217 (744)
Q Consensus 143 ~~~~~~~i~~aI~~Ak~-----~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~ 217 (744)
|.+.|+.+.++|++|++ +|.++.|++.. +..+.++|.+||++||+|++|+ | .++....
T Consensus 350 p~~sf~~vi~~I~~A~~DP~V~sIk~tlYr~~~---------------ds~Iv~ALi~AA~rGv~V~vLv-e-l~arfde 412 (705)
T 2o8r_A 350 PYYTYDYVVRLLMEAAISPDVSEIRLTQYRVAE---------------NSSIISALEAAAQSGKKVSVFV-E-LKARFDE 412 (705)
T ss_dssp TTBCSHHHHHHHHHHHTCTTEEEEEEEESCCCS---------------CCHHHHHHHHHHHTTCEEEEEE-C-CCSCC--
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECC---------------CHHHHHHHHHHHHCCCEEEEEE-E-CCCCCCH
T ss_conf 367577999999985308884399999999709---------------7899999999998799999999-6-8878563
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCCEEEEEECCC--CCCCCCCCCCEEEEECCCC
Q ss_conf 12565678948889876189938997489999999611210034333571008997399--9999976653479985522
Q 004579 218 KKDGLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSP--MPNGDPERRRIMSFVGGID 295 (744)
Q Consensus 218 ~~~g~~~t~~~~~~~~l~~~gV~v~~~~r~p~~~~~~~~~~~~~~~~~hHqK~vVVD~~--~~~~~~~~~~~vafvGG~d 295 (744)
. .+..+.+.|+.+||+|...- ..+++|+|++|||++ ..++ -++ .+++|.-|
T Consensus 413 e-------~ni~wa~~Le~aGv~Vv~g~----------------~~lk~H~Ki~lIdrr~~~~g~---~~~-y~~igtGN 465 (705)
T 2o8r_A 413 E-------NNLRLSERMRRSGIRIVYSM----------------PGLKVHAKTALILYHTPAGER---PQG-IALLSTGN 465 (705)
T ss_dssp ---------CHHHHHHHHHHTCEEEECC----------------TTCCBCCCEEEEEECCCSSSC---CCE-EEEEESSC
T ss_pred H-------HHHHHHHHHHHCCCEEEECC----------------CCCCCEEEEEEEECCCCCCCC---EEE-EEECCCCC
T ss_conf 4-------44999999997899999866----------------887734479999461012786---237-87636166
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECH-HHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 689877898866444566668899989999998767899998715423335182-7999999999999872498532332
Q 004579 296 LCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGP-IAWDVLFNFEQRWRKQGGKDVLVHL 374 (744)
Q Consensus 296 l~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~ri~Gp-aa~dl~~~F~~rW~~~~~~~~~~~~ 374 (744)
..+. . ..-|.|+++...+| ++.|+...|...|....
T Consensus 466 ~n~~----------------------------------t-ariy~D~~l~t~~~~i~~dl~~vF~~~tg~~~-------- 502 (705)
T 2o8r_A 466 FNET----------------------------------T-ARIYSDTTLMTANTDIVHDVYRLFRILDGDPE-------- 502 (705)
T ss_dssp SSCC----------------------------------C-SSCEEEEEEEECCHHHHHHHHHHHHHHTTCCC--------
T ss_pred EEEE----------------------------------E-EEEEEEEEEEECCHHHHHHHHHHHHHHHCCCC--------
T ss_conf 0034----------------------------------8-99994310353686999999999999838888--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC----E
Q ss_conf 234777799999988999998312553024678566789994788660343489976415999999999995024----7
Q 004579 375 RELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKN----F 450 (744)
Q Consensus 375 ~~~~~~~~p~~~~~~~~~~~~~~vQi~rS~~~~~~~~~p~~~~~~~~~~l~~g~~~~~e~sI~~ayl~aI~~A~~----~ 450 (744)
+ ..+ .|++-+ |. .....|...+..+|..|++ +
T Consensus 503 --------~----------~~~-~~l~~s------------------------P~-~~~~~i~~~i~~eI~~Ak~G~~a~ 538 (705)
T 2o8r_A 503 --------P----------ARF-SRLLVA------------------------RY-NMGEAITNLIEREIENVKRGKRGY 538 (705)
T ss_dssp --------C----------SCC-SSCEET------------------------TT-THHHHHHHHHHHHHHHHHTTCCCE
T ss_pred --------C----------CCC-EEEEEC------------------------CC-HHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf --------7----------774-289989------------------------90-188999999999999975689988
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99952234556445566899830021003346999999999988199619999924999999998326899998876433
Q 004579 451 IYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMD 530 (744)
Q Consensus 451 IyIEnqYFi~~~~~w~~~~~~~~~~~~~n~i~~~la~~i~~a~~~g~~~~V~IvlP~~peg~~~~~~~~~i~~~~~rt~~ 530 (744)
|+|.++| ++ +. .+..+|..|.++| |+|.+++-...--.|
T Consensus 539 I~ik~n~-l~------D~---------------~ii~aL~~As~~G--V~V~LIVRGiC~L~P----------------- 577 (705)
T 2o8r_A 539 MLLKMNG-LQ------DK---------------NVITQLYRASEAG--VEIDLIVRGICCLVP----------------- 577 (705)
T ss_dssp EEEEESC-BC------CH---------------HHHHHHHHHHHTT--CEEEEEESSCBCSCC-----------------
T ss_pred EEEECCC-CC------CH---------------HHHHHHHHHHHCC--CEEEEEECCCCCCCC-----------------
T ss_conf 9998189-99------89---------------9999999999879--969999726424688-----------------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEEEEEEE---ECEEEE
Q ss_conf 26999999999869998987832884327721125776677999999606899986202016866559999---212999
Q 004579 531 MMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIV---DDEYII 607 (744)
Q Consensus 531 ~~~~~i~~~L~~~gi~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK~mIV---DD~~~i 607 (744)
|+. -.+-+.+.+ +.+ + ..=|+|+++. ||+++.
T Consensus 578 -------------gv~--~sdni~V~S-----------ivg-----------------r--~Leh~RIy~f~~gd~~~~~ 612 (705)
T 2o8r_A 578 -------------DMP--QSRNIRVTR-----------LVD-----------------M--YLEHSRIWCFHNGGKEEVF 612 (705)
T ss_dssp -------------SSG--GGTTEEEEE-----------CCS-----------------S--SEECCCEEEECGGGSCEEE
T ss_pred -------------CCC--CCCCEEEEE-----------EHH-----------------H--HHHCCEEEEEECCCCCEEE
T ss_conf -------------987--788768976-----------078-----------------8--9756879999889986899
Q ss_pred ECCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 7175577564458998421898526875
Q 004579 608 IGSANINQRSMEGARDTEIAMGGYQPYH 635 (744)
Q Consensus 608 IGSANiN~RSm~g~rDsEi~i~i~d~~~ 635 (744)
||||||+.|||..+ .|+++.++|+..
T Consensus 613 IGSAn~m~Rnl~~r--~Ev~~~i~d~~~ 638 (705)
T 2o8r_A 613 ISSADWMKRNLYNR--IETACPVLDPTL 638 (705)
T ss_dssp EESCCBCHHHHHTS--BCEEEECCSHHH
T ss_pred EECCCCCHHHHHHE--EEEEEEECCHHH
T ss_conf 95644333524312--678789759899
No 5
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=1.00 E-value=1 Score=132.29 Aligned_cols=133 Identities=16% Similarity=0.208 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 37999999998126389999952475047750899999994128999999964369869999828875310101256567
Q 004579 145 RCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMA 224 (744)
Q Consensus 145 ~~~~~i~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~~~~g~~~ 224 (744)
..++.++++|.+|+++|+|+.|.|. ...+.++|.+|++|||+||||+ |..... .
T Consensus 46 ~~~~~ll~~I~~A~~sI~i~~y~~~----------------~~~i~~aL~~aa~rGV~Vrii~-D~~~~~-~-------- 99 (196)
T 4ggj_A 46 SSLSRLLRALLAARSSLELCLFAFS----------------SPQLGRAVQLLHQRGVRVRVIT-DCDYMA-L-------- 99 (196)
T ss_dssp CHHHHHHHHHHTCSSEEEEEESCBC----------------CHHHHHHHHHHHHTTCEEEEEE-SSCCC-----------
T ss_pred HHHHHHHHHHHHHHEEEEEEEEEEC----------------CHHHHHHHHHHHHCCCCEEEEE-ECCCCC-C--------
T ss_conf 9999999999974009999999837----------------7799999999998698089998-332232-4--------
Q ss_pred CCCHHHHHHHCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 89488898761899389974899999996112100343335710089973999999976653479985522689877898
Q 004579 225 THDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTP 304 (744)
Q Consensus 225 t~~~~~~~~l~~~gV~v~~~~r~p~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~dl~~~R~Dt~ 304 (744)
.......|..+||+++.... ....|+|++|||++ ++|+||.|++...+.
T Consensus 100 --~~~~~~~l~~~gi~v~~~~~----------------~~~~H~K~~viD~~-----------~~~~GS~N~t~~~~~-- 148 (196)
T 4ggj_A 100 --NGSQIGLLRKAGIQVRHDQD----------------LGYMHHKFAIVDKK-----------VLITGSLNWTTQAIQ-- 148 (196)
T ss_dssp ---CCHHHHHHHTTCEEEECCS----------------SSCCCCEEEEETTT-----------EEEEESCCBCHHHHH--
T ss_pred --CHHHHHHHHHCCCCCCCCCC----------------CCCCCCCEEEECCE-----------EEEECCCCCCHHHHC--
T ss_conf --47789999866997202465----------------55545747997125-----------888648668844532--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE-CHHHHHHHHHHHHHHHHHCC
Q ss_conf 8664445666688999899999987678999987154233351-82799999999999987249
Q 004579 305 FHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLE-GPIAWDVLFNFEQRWRKQGG 367 (744)
Q Consensus 305 ~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~ri~-Gpaa~dl~~~F~~rW~~~~~ 367 (744)
.. ++..+.+. +++|..+...|++.|+....
T Consensus 149 --------------------------------~n-~E~~~~i~~~~~~~~~~~~F~~~W~~~~p 179 (196)
T 4ggj_A 149 --------------------------------NN-RENVLIMEDTEYVRLFLEEFERIWEEFDP 179 (196)
T ss_dssp --------------------------------HC-CEEEEEECCHHHHHHHHHHHHHHHHHTCC
T ss_pred --------------------------------CC-CEEEEEEECHHHHHHHHHHHHHHHHHCCC
T ss_conf --------------------------------46-24699997999999999999999986787
No 6
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=1.00 E-value=1 Score=123.03 Aligned_cols=154 Identities=14% Similarity=0.137 Sum_probs=107.0
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 47033799999999812638999995247504775089999999412899999996436986999982887531010125
Q 004579 141 YEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKD 220 (744)
Q Consensus 141 y~~~~~~~~i~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~~~~ 220 (744)
+-..++++.+.++|++|+++|+|+.|.|. ...|.++|++||+|||+||||+ |...+...
T Consensus 54 ~~~~~~~~~ii~~I~~A~~sI~i~~Y~~~----------------~~~I~~aL~~Aa~RGV~VRii~-D~~~~~~~---- 112 (220)
T 4gel_A 54 HCSLRNVAKIVEQIDRAVYSIDLAIYTFT----------------SLFLADSIKRALQRGVIIRIIS-DGEMVYSK---- 112 (220)
T ss_dssp TCHHHHHHHHHHHHHTCSSEEEEECSCBC----------------CHHHHHHHHHHHHHTCEEEEEC-CTTTTTST----
T ss_pred CCCHHHHHHHHHHHHHHHHEEEEEEEEEC----------------CHHHHHHHHHHHHCCCEEEEEE-ECHHHHHH----
T ss_conf 68589999999999973219999999838----------------7999999999998598299998-42010114----
Q ss_pred CCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCC-EEEE---CCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 6567894888987618993899748999999961-1210---03433357100899739999999766534799855226
Q 004579 221 GLMATHDEETEKFFQGTDVHCILCPRNPDDGGSF-IQDI---QISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDL 296 (744)
Q Consensus 221 g~~~t~~~~~~~~l~~~gV~v~~~~r~p~~~~~~-~~~~---~~~~~~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~dl 296 (744)
......+...++.+............+ +.+. ......+.|.|++++|++ ++++||.|+
T Consensus 113 -------~~~~~~~~~~~~~~~~~~~~~~~h~K~~viD~~~~~~~~~~~~H~K~~v~D~~-----------~v~~GS~N~ 174 (220)
T 4gel_A 113 -------GSQISMLAQLGVPVRVPITTNLMHNKFCIIDGFERVEEIRLLRKLKFMRPCYS-----------IVISGSVNW 174 (220)
T ss_dssp -------TCHHHHHHHTTCCEEECCSSSCBCCCEEEESCHHHHHHHHHHTTCSCCCCCCC-----------EEEEESCCB
T ss_pred -------HHHHHHHHHCCCCEEEECCCCCCCCEEEEECCHHCCCCCCCCCCEECCCCCCC-----------EEEECCCCC
T ss_conf -------88999987447707840454310030578704020334431111000134551-----------478557333
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHCC
Q ss_conf 89877898866444566668899989999998767899998715423335182799999999999987249
Q 004579 297 CDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGG 367 (744)
Q Consensus 297 ~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~ri~Gpaa~dl~~~F~~rW~~~~~ 367 (744)
+.... ...|.|+.+...+++|.++...|.+.|+....
T Consensus 175 t~~s~----------------------------------~~N~E~~~vi~~~~~a~~~~~~F~~~W~~~~~ 211 (220)
T 4gel_A 175 TALGL----------------------------------GGNWENCIITADDKLTATFQAEFQRMWRAFAK 211 (220)
T ss_dssp SHHHH----------------------------------HTSBEEEEEECCHHHHHHHHHHHHHHHHHSEE
T ss_pred CCCCC----------------------------------CCCCEEEEEEECHHHHHHHHHHHHHHHHHCCC
T ss_conf 41002----------------------------------56815899998899999999999999986469
No 7
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=1.00 E-value=1 Score=121.60 Aligned_cols=46 Identities=20% Similarity=0.227 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 79999999981263899999524750477508999999941289999999643698699998
Q 004579 146 CWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLV 207 (744)
Q Consensus 146 ~~~~i~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~rGV~VriLv 207 (744)
.++.+.++|.+|+++|+|+.+.+. ...+.++|.++++|||+|+||+
T Consensus 15 ~~~~~~~~i~~A~~~I~i~~~~~~----------------~~~i~~aL~~a~~rGV~Vril~ 60 (155)
T 1byr_A 15 ARVLVLSAIDSAKTSIRMMAYSFT----------------APDIMKALVAAKKRGVDVKIVI 60 (155)
T ss_dssp HHHHHHHHHHHCSSEEEEEESSBC----------------CHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHEEEEEEEEEC----------------CHHHHHHHHHHHHCCCEEEEEE
T ss_conf 799999999987539999999827----------------7899999999997899799998
No 8
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=1.00 E-value=1 Score=119.39 Aligned_cols=133 Identities=18% Similarity=0.182 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC
Q ss_conf 59999999999950247999522345564455668998300210033469999999999881996199999249999999
Q 004579 434 RSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFP 513 (744)
Q Consensus 434 ~sI~~ayl~aI~~A~~~IyIEnqYFi~~~~~w~~~~~~~~~~~~~n~i~~~la~~i~~a~~~g~~~~V~IvlP~~peg~~ 513 (744)
.+....++++|.+|+++|+|+. |++++ ..|+.+|.+|++|| |+|+||+......
T Consensus 45 ~~~~~~ll~~I~~A~~sI~i~~-y~~~~---------------------~~i~~aL~~aa~rG--V~Vrii~D~~~~~-- 98 (196)
T 4ggj_A 45 ESSLSRLLRALLAARSSLELCL-FAFSS---------------------PQLGRAVQLLHQRG--VRVRVITDCDYMA-- 98 (196)
T ss_dssp CCHHHHHHHHHHTCSSEEEEEE-SCBCC---------------------HHHHHHHHHHHHTT--CEEEEEESSCCC---
T ss_pred HHHHHHHHHHHHHHHEEEEEEE-EEECC---------------------HHHHHHHHHHHHCC--CCEEEEEECCCCC--
T ss_conf 7999999999997400999999-98377---------------------79999999999869--8089998332232--
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEE
Q ss_conf 98326899998876433269999999998699989878328843277211257766779999996068999862020168
Q 004579 514 ESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIY 593 (744)
Q Consensus 514 ~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~gi~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iy 593 (744)
. .. +.+..|.++|+++ | .+.+ ..+
T Consensus 99 ~-----------~~-------~~~~~l~~~gi~v----~---------------~~~~-------------------~~~ 122 (196)
T 4ggj_A 99 L-----------NG-------SQIGLLRKAGIQV----R---------------HDQD-------------------LGY 122 (196)
T ss_dssp -------------C-------CHHHHHHHTTCEE----E---------------ECCS-------------------SSC
T ss_pred C-----------CH-------HHHHHHHHCCCCC----C---------------CCCC-------------------CCC
T ss_conf 4-----------47-------7899998669972----0---------------2465-------------------555
Q ss_pred EEEEEEEEECEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 6655999921299971755775644589984218985268754677874320999999999995
Q 004579 594 VHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEH 657 (744)
Q Consensus 594 vHSK~mIVDD~~~iIGSANiN~RSm~g~rDsEi~i~i~d~~~~~~~~~~~~~~~~lR~~Lw~eh 657 (744)
+|+|+||||++++++||+||+.+|+..| .|..+.++++..+. +....=.++|.+.
T Consensus 123 ~H~K~~viD~~~~~~GS~N~t~~~~~~n--~E~~~~i~~~~~~~-------~~~~~F~~~W~~~ 177 (196)
T 4ggj_A 123 MHHKFAIVDKKVLITGSLNWTTQAIQNN--RENVLIMEDTEYVR-------LFLEEFERIWEEF 177 (196)
T ss_dssp CCCEEEEETTTEEEEESCCBCHHHHHHC--CEEEEEECCHHHHH-------HHHHHHHHHHHHT
T ss_pred CCCCEEEECCEEEEECCCCCCHHHHCCC--CEEEEEEECHHHHH-------HHHHHHHHHHHHC
T ss_conf 4574799712588864866884453246--24699997999999-------9999999999867
No 9
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=1.00 E-value=1 Score=117.88 Aligned_cols=133 Identities=18% Similarity=0.198 Sum_probs=93.6
Q ss_pred HHHHHHHHHHCCC-----EEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf 9999999995024-----79995223455644556689983002100334699999999998819961999992499999
Q 004579 437 QDAYIHAIRRAKN-----FIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEG 511 (744)
Q Consensus 437 ~~ayl~aI~~A~~-----~IyIEnqYFi~~~~~w~~~~~~~~~~~~~n~i~~~la~~i~~a~~~g~~~~V~IvlP~~peg 511 (744)
..+++++|++|++ .|+| ++||+++ +. .++.+|++|+++| ++|.|+++..+-.
T Consensus 349 f~~v~~~I~~A~~dp~v~~I~i-t~Y~~~~-----d~---------------~I~~AL~~AA~rG--V~VrVLvd~~a~~ 405 (687)
T 1xdp_A 349 FEHVLELLRQASFDPSVLAIKI-NIYRVAK-----DS---------------RIIDSMIHAAHNG--KKVTVVVELQARF 405 (687)
T ss_dssp THHHHHHHHHHHHCTTEEEEEE-EESSCCT-----TC---------------HHHHHHHHHHHTT--CEEEEEECTTCSS
T ss_pred HHHHHHHHHHHHHCCCCEEEEE-EEEEECC-----CH---------------HHHHHHHHHHHCC--CEEEEEECCCCCC
T ss_conf 0157999998753876218999-8546328-----67---------------9999999998659--9899998897642
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEE
Q ss_conf 99983268999988764332699999999986999898783288432772112577667799999960689998620201
Q 004579 512 FPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFM 591 (744)
Q Consensus 512 ~~~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~gi~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~ 591 (744)
. ...+ . ..++.|.++|+++ ..+.+ .
T Consensus 406 ~-~~~n---------~-------~~~~~L~~aGV~V-------------------~~~~~-------------------~ 430 (687)
T 1xdp_A 406 D-EEAN---------I-------HWAKRLTEAGVHV-------------------IFSAP-------------------G 430 (687)
T ss_dssp T-TTTT---------T-------TTTHHHHHHTCEE-------------------EECCT-------------------T
T ss_pred C-HHHH---------H-------HHHHHHHHCCCEE-------------------EEECC-------------------C
T ss_conf 1-4657---------9-------9999999789899-------------------99258-------------------8
Q ss_pred EEEEEEEEEEEC----E---EEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 686655999921----2---9997175577564458998421898526875467787432099999999999
Q 004579 592 IYVHAKMMIVDD----E---YIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYE 656 (744)
Q Consensus 592 iyvHSK~mIVDD----~---~~iIGSANiN~RSm~g~rDsEi~i~i~d~~~~~~~~~~~~~~~~lR~~Lw~e 656 (744)
..+|+|++|||+ + |+.|||+|+|.||+..+ +|+++.+.++... ..+..+-..+|..
T Consensus 431 ~k~H~Ki~VID~re~~~i~~~a~iGS~N~d~rs~~~n--~D~~l~i~~~~i~-------~~l~~~F~~~~~~ 493 (687)
T 1xdp_A 431 LKIHAKLFLISRKENGEVVRYAHIGTGNFNEKTARLY--TDYSLLTADARIT-------NEVRRVFNFIENP 493 (687)
T ss_dssp CEECCEEEEEEEEETTEEEEEEEEESSCSCTTGGGTE--EEEEEEECCHHHH-------HHHHHHHHHHHCT
T ss_pred CCCCCEEEEEEECCCCEEEEEEEEECCCCCCCHHHHC--CEEEEEEECHHHH-------HHHHHHHHHHHHH
T ss_conf 6630269999821588078999996886880525241--2379998188999-------9999999999734
No 10
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=1.00 E-value=1 Score=117.01 Aligned_cols=135 Identities=19% Similarity=0.178 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
Q ss_conf 15999999999995024799952234556445566899830021003346999999999988199619999924999999
Q 004579 433 DRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGF 512 (744)
Q Consensus 433 e~sI~~ayl~aI~~A~~~IyIEnqYFi~~~~~w~~~~~~~~~~~~~n~i~~~la~~i~~a~~~g~~~~V~IvlP~~peg~ 512 (744)
+.++.++++++|.+|+++|+|+++||.. ..+..+|.+|.+|| ++|+|+++..+..
T Consensus 12 ~~~~~~~~~~~i~~A~~~I~i~~~~~~~----------------------~~i~~aL~~a~~rG--V~Vril~~~~~~~- 66 (155)
T 1byr_A 12 EGSARVLVLSAIDSAKTSIRMMAYSFTA----------------------PDIMKALVAAKKRG--VDVKIVIDERGNT- 66 (155)
T ss_dssp TTHHHHHHHHHHHHCSSEEEEEESSBCC----------------------HHHHHHHHHHHHTT--CEEEEEEESTTCC-
T ss_pred CCCHHHHHHHHHHHHHHEEEEEEEEECC----------------------HHHHHHHHHHHHCC--CEEEEEEECCCCC-
T ss_conf 9867999999999875399999998277----------------------89999999999789--9799998074335-
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEE
Q ss_conf 99832689999887643326999999999869998987832884327721125776677999999606899986202016
Q 004579 513 PESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMI 592 (744)
Q Consensus 513 ~~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~gi~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~i 592 (744)
. +.. ...++.|.+.|+++ + + +.+ ..
T Consensus 67 ---~-------~~~-------~~~~~~L~~~gv~v----~--~-------------~~~-------------------~~ 91 (155)
T 1byr_A 67 ---G-------RAS-------IAAMNYIANSGIPL----R--T-------------DSN-------------------FP 91 (155)
T ss_dssp ---S-------HHH-------HHHHHHHHHTTCCE----E--E-------------ECS-------------------SS
T ss_pred ---C-------CCC-------HHHHHHHHHCCCEE----E--E-------------CCC-------------------CC
T ss_conf ---6-------555-------88999999789869----9--8-------------588-------------------64
Q ss_pred EEEEEEEEEECEEEEECCCCCCCCCCCCCCCCCEEEEEECC-CCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 86655999921299971755775644589984218985268-75467787432099999999999
Q 004579 593 YVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQP-YHLSTRVPARGQIHGFRMSLWYE 656 (744)
Q Consensus 593 yvHSK~mIVDD~~~iIGSANiN~RSm~g~rDsEi~i~i~d~-~~~~~~~~~~~~~~~lR~~Lw~e 656 (744)
.+|+|++|||++++++||+|++.+|+..| .|.++.+.++ ... .+....-.++|..
T Consensus 92 ~~H~K~~iiD~~~~~iGS~N~~~~~~~~n--~E~~~~i~~~~~l~-------~~~~~~f~~~w~~ 147 (155)
T 1byr_A 92 IQHDKVIIVDNVTVETGSFNFTKAAETKN--SENAVVIWNMPKLA-------ESFLEHWQDRWNQ 147 (155)
T ss_dssp CCCCCEEEETTTEEEEESCCBSHHHHHTS--CEEEEEEESCHHHH-------HHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCEEEEECCCCCCCCCCCC--CCCEEEECCCHHHH-------HHHHHHHHHHHHH
T ss_conf 56323999989999997887780114658--23479976859999-------9999999999970
Done!