Query 004580
Match_columns 744
No_of_seqs 418 out of 3230
Neff 8.8
Searched_HMMs 29240
Date Tue Mar 26 18:02:49 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004580.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1882-1885//hhsearch_pdb/004580hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 349.4 12.9 223 513-743 32-258 (311)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 347.5 11.4 217 512-733 12-245 (299)
3 4aoj_A High affinity nerve gro 1.0 1 1 345.6 16.0 209 512-723 40-267 (329)
4 4b9d_A Serine/threonine-protei 1.0 1 1 343.8 14.3 205 512-722 23-230 (350)
5 4fie_A Serine/threonine-protei 1.0 1 1 341.8 17.4 201 512-721 150-351 (423)
6 4fih_A Serine/threonine-protei 1.0 1 1 341.3 15.1 201 512-721 73-274 (346)
7 4gt4_A Tyrosine-protein kinase 1.0 1 1 341.2 14.0 216 513-733 26-262 (308)
8 3ubd_A Ribosomal protein S6 ki 1.0 1 1 339.4 7.9 221 513-743 24-250 (304)
9 3m7h_A Putidacin L1; monocot m 1.0 1 1 337.8 13.5 235 21-286 10-256 (276)
10 3omv_A RAF proto-oncogene seri 1.0 1 1 334.6 17.2 204 511-722 34-242 (307)
No 1
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=349.45 Aligned_cols=223 Identities=28% Similarity=0.382 Sum_probs=195.7
Q ss_pred CCCCCCCCCCCCCCEEEECCCCC-CCCEEEEEECCCC---CHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCEEEEEE
Q ss_conf 39652222374681379811004-6640588832677---8130999999999999813887034777999759599999
Q 004580 513 ENFSMQCKLGEGGFGPVYKGRLL-NGQEVAVKRLSSQ---SGQGLEEFKNEMMLIAKLQHRNLVKLLGCCVEQGEKILIL 588 (744)
Q Consensus 513 ~~y~~~~~LG~G~fg~Vy~~~~~-~g~~vavK~l~~~---~~~~~~~f~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lV~ 588 (744)
++|++.++||+|+||.||+++.. +++.||+|++... .....+.+.+|+.++++++|||||++++++.+.+..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEE
T ss_conf 23689889831648499999999999899999988888779789999999999998679989891999997389899999
Q ss_pred EECCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEECCCCEEEEEECCCEECCCC
Q ss_conf 93079991133227687666899999999999999999988449997287047999889928984599742574112898
Q 004580 589 EYMPNKSLDVFLFDPTKKRLLGWQARVTIIEGIAQGLLYLHQYSRFRIIHRDLKASNVLLDMDMNPKISDFGLARMFGGD 668 (744)
Q Consensus 589 E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFgla~~~~~~ 668 (744)
||+++|+|..++. ..+.+++..+..++.||+.||.|||+++ |+||||||+|||++.++.+||+|||+|+.+...
T Consensus 112 Ey~~gG~L~~~i~---~~~~l~e~~~~~~~~qi~~al~ylH~~~---IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~ 185 (311)
T 4aw0_A 112 SYAKNGELLKYIR---KIGSFDETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPE 185 (311)
T ss_dssp CCCTTEEHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred ECCCCCCHHHHHH---HCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf 6489989999998---7499999999999999999999999887---826878789969858988899876875025778
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 645674322444660181122679879314399999999999949999988888864310001036644422546
Q 004580 669 ELQGNTKRIVGTYGYMSPEYALDGLFSIKSDVFSFGILMLETLSGKKNTGVYNADSFNLLGYVSNKSLHFYLIFS 743 (744)
Q Consensus 669 ~~~~~~~~~~gt~~y~APE~~~~~~~t~~~DvwSlGviL~eLltG~~p~~~~~~~~~~l~~~~~~~~~~f~~~~~ 743 (744)
.........+||+.|+|||++.+..++.++||||+||++|||++|++||...+... +...+.+....||..+|
T Consensus 186 ~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~--~~~~i~~~~~~~p~~~s 258 (311)
T 4aw0_A 186 SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGL--IFAKIIKLEYDFPEKFF 258 (311)
T ss_dssp TTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHHHHHTCCCCCTTCC
T ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH--HHHHHHCCCCCCCCCCC
T ss_conf 77654367556803079989768999968989989999999974989989979999--99999719999996569
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=347.52 Aligned_cols=217 Identities=29% Similarity=0.493 Sum_probs=187.1
Q ss_pred HCCCCCCCCCCCCCCEEEECCCCC------CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCEEE
Q ss_conf 039652222374681379811004------66405888326778130999999999999813887034777999759599
Q 004580 512 TENFSMQCKLGEGGFGPVYKGRLL------NGQEVAVKRLSSQSGQGLEEFKNEMMLIAKLQHRNLVKLLGCCVEQGEKI 585 (744)
Q Consensus 512 ~~~y~~~~~LG~G~fg~Vy~~~~~------~g~~vavK~l~~~~~~~~~~f~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~ 585 (744)
.++|.+.++||+|+||.||+|++. ++..||||+++.......++|.+|+.++.+++|||||++++++.+++..+
T Consensus 12 r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~ 91 (299)
T 4asz_A 12 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLI 91 (299)
T ss_dssp GGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred HHHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEE
T ss_conf 88929824982078829999998776667788799999967778589999999999998589988862879995699899
Q ss_pred EEEEECCCCCHHHHHCCC----------CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEECCCCEE
Q ss_conf 999930799911332276----------8766689999999999999999998844999728704799988992898459
Q 004580 586 LILEYMPNKSLDVFLFDP----------TKKRLLGWQARVTIIEGIAQGLLYLHQYSRFRIIHRDLKASNVLLDMDMNPK 655 (744)
Q Consensus 586 lV~E~~~~gsL~~~l~~~----------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~DLkp~NILl~~~~~~k 655 (744)
+||||+++|+|..+|+.. .....+++.+++.++.|++.||.|||+++ |+||||||+|||++.++.+|
T Consensus 92 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDlKp~NILl~~~~~~K 168 (299)
T 4asz_A 92 MVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVK 168 (299)
T ss_dssp EEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEE
T ss_pred EEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEE
T ss_conf 999858999689999860864211123577788999999999999999999997599---04676577638987998689
Q ss_pred EEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 974257411289864567432244466018112267987931439999999999994-999998888886431000103
Q 004580 656 ISDFGLARMFGGDELQGNTKRIVGTYGYMSPEYALDGLFSIKSDVFSFGILMLETLS-GKKNTGVYNADSFNLLGYVSN 733 (744)
Q Consensus 656 l~DFgla~~~~~~~~~~~~~~~~gt~~y~APE~~~~~~~t~~~DvwSlGviL~eLlt-G~~p~~~~~~~~~~l~~~~~~ 733 (744)
|+|||+|+...............||+.|+|||++.+..++.++|||||||+||||+| |+.||...+..+ +...+.+
T Consensus 169 i~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~--~~~~i~~ 245 (299)
T 4asz_A 169 IGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNE--VIECITQ 245 (299)
T ss_dssp ECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH--HHHHHHH
T ss_pred ECCCCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHH--HHHHHHC
T ss_conf 8873001006788741664751347010388987079997036677889999999808999999989999--9999980
No 3
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=345.61 Aligned_cols=209 Identities=30% Similarity=0.507 Sum_probs=184.7
Q ss_pred HCCCCCCCCCCCCCCEEEECCCCC------CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCEEE
Q ss_conf 039652222374681379811004------66405888326778130999999999999813887034777999759599
Q 004580 512 TENFSMQCKLGEGGFGPVYKGRLL------NGQEVAVKRLSSQSGQGLEEFKNEMMLIAKLQHRNLVKLLGCCVEQGEKI 585 (744)
Q Consensus 512 ~~~y~~~~~LG~G~fg~Vy~~~~~------~g~~vavK~l~~~~~~~~~~f~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~ 585 (744)
.++|.+.++||+|+||.||+|+++ +++.||||+++.......++|.+|+.++.+++|||||++++++.+....+
T Consensus 40 ~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~ 119 (329)
T 4aoj_A 40 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLL 119 (329)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred HHHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEE
T ss_conf 89928877971477848998998786657789699999977579799999999999998589989996989999899899
Q ss_pred EEEEECCCCCHHHHHCCCC------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEECCCC
Q ss_conf 9999307999113322768------------7666899999999999999999988449997287047999889928984
Q 004580 586 LILEYMPNKSLDVFLFDPT------------KKRLLGWQARVTIIEGIAQGLLYLHQYSRFRIIHRDLKASNVLLDMDMN 653 (744)
Q Consensus 586 lV~E~~~~gsL~~~l~~~~------------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~DLkp~NILl~~~~~ 653 (744)
+||||+++|+|..+++... ....+++.+++.|+.|++.||.|||+.+ |+||||||+|||++.++.
T Consensus 120 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLKp~NILl~~~~~ 196 (329)
T 4aoj_A 120 MVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLV 196 (329)
T ss_dssp EEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTE
T ss_pred EEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---EECCCCCHHHEEECCCCC
T ss_conf 99982799939999986075410012211245788999999999999999999984088---422666676489889996
Q ss_pred EEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-CCCCCCCCCCC
Q ss_conf 59974257411289864567432244466018112267987931439999999999994-99999888888
Q 004580 654 PKISDFGLARMFGGDELQGNTKRIVGTYGYMSPEYALDGLFSIKSDVFSFGILMLETLS-GKKNTGVYNAD 723 (744)
Q Consensus 654 ~kl~DFgla~~~~~~~~~~~~~~~~gt~~y~APE~~~~~~~t~~~DvwSlGviL~eLlt-G~~p~~~~~~~ 723 (744)
+||+|||+++.+.............||+.|||||++.+..++.++|||||||+||||+| |+.||...+..
T Consensus 197 ~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~ 267 (329)
T 4aoj_A 197 VKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNT 267 (329)
T ss_dssp EEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHH
T ss_pred EEECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 89766603336567875300476455656658265447999966300105789999982899999998999
No 4
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=343.83 Aligned_cols=205 Identities=25% Similarity=0.394 Sum_probs=180.8
Q ss_pred HCCCCCCCCCCCCCCEEEECCCCC-CCCEEEEEECCCC--CHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCEEEEEE
Q ss_conf 039652222374681379811004-6640588832677--8130999999999999813887034777999759599999
Q 004580 512 TENFSMQCKLGEGGFGPVYKGRLL-NGQEVAVKRLSSQ--SGQGLEEFKNEMMLIAKLQHRNLVKLLGCCVEQGEKILIL 588 (744)
Q Consensus 512 ~~~y~~~~~LG~G~fg~Vy~~~~~-~g~~vavK~l~~~--~~~~~~~f~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lV~ 588 (744)
.++|++.++||+|+||.||++++. +++.||||+++.. .....+.+.+|+.++++++|||||++++++.+.+..|+||
T Consensus 23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVm 102 (350)
T 4b9d_A 23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVM 102 (350)
T ss_dssp CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEE
T ss_conf 12558847970277939999998899989999998658789799999999999998779989891999999899999999
Q ss_pred EECCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEECCCCEEEEEECCCEECCCC
Q ss_conf 93079991133227687666899999999999999999988449997287047999889928984599742574112898
Q 004580 589 EYMPNKSLDVFLFDPTKKRLLGWQARVTIIEGIAQGLLYLHQYSRFRIIHRDLKASNVLLDMDMNPKISDFGLARMFGGD 668 (744)
Q Consensus 589 E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFgla~~~~~~ 668 (744)
||+++|+|..++... ....+++.+++.++.||+.||.|||+++ |+||||||+|||++.++.+||+|||+|+.+...
T Consensus 103 Ey~~gg~L~~~i~~~-~~~~~~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~ 178 (350)
T 4b9d_A 103 DYCEGGDLFKRINAQ-KGVLFQEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST 178 (350)
T ss_dssp ECCTTCBHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHHHTT---CEETTCCGGGEEECTTCCEEECSTTEESCCCHH
T ss_pred ECCCCCCHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHCC---EEECCCCHHHEEECCCCCEEECCCCCCEEECCC
T ss_conf 488998399999973-8999978999999999999999999899---151359789979878999897646521440688
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 645674322444660181122679879314399999999999949999988888
Q 004580 669 ELQGNTKRIVGTYGYMSPEYALDGLFSIKSDVFSFGILMLETLSGKKNTGVYNA 722 (744)
Q Consensus 669 ~~~~~~~~~~gt~~y~APE~~~~~~~t~~~DvwSlGviL~eLltG~~p~~~~~~ 722 (744)
. ......+||+.|+|||++.+..|+.++|||||||+||||++|++||...+.
T Consensus 179 ~--~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~ 230 (350)
T 4b9d_A 179 V--ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSM 230 (350)
T ss_dssp H--HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred C--CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 5--410145788360399998799989599999999999999978799899699
No 5
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=341.79 Aligned_cols=201 Identities=26% Similarity=0.390 Sum_probs=180.2
Q ss_pred HCCCCCCCCCCCCCCEEEECCCCC-CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCEEEEEEEE
Q ss_conf 039652222374681379811004-6640588832677813099999999999981388703477799975959999993
Q 004580 512 TENFSMQCKLGEGGFGPVYKGRLL-NGQEVAVKRLSSQSGQGLEEFKNEMMLIAKLQHRNLVKLLGCCVEQGEKILILEY 590 (744)
Q Consensus 512 ~~~y~~~~~LG~G~fg~Vy~~~~~-~g~~vavK~l~~~~~~~~~~f~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lV~E~ 590 (744)
.+.|++.++||+|+||.||+|+++ .++.||||++........+.+.+|+.+|+.++|||||++++++.+.+..|+||||
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy 229 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 229 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred HHHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 68438616962481848999999999989999998625546899999999999857998987168999989999999969
Q ss_pred CCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEECCCCEEEEEECCCEECCCCCC
Q ss_conf 07999113322768766689999999999999999998844999728704799988992898459974257411289864
Q 004580 591 MPNKSLDVFLFDPTKKRLLGWQARVTIIEGIAQGLLYLHQYSRFRIIHRDLKASNVLLDMDMNPKISDFGLARMFGGDEL 670 (744)
Q Consensus 591 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFgla~~~~~~~~ 670 (744)
+++|+|..++. ...+++.++..++.||+.||.|||+++ |+||||||+|||++.++.+||+|||+|+.+.....
T Consensus 230 ~~gG~L~~~i~----~~~l~e~~~~~~~~qil~aL~ylH~~~---IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~ 302 (423)
T 4fie_A 230 LEGGALTDIVT----HTRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP 302 (423)
T ss_dssp CTTEEHHHHHH----HSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSTTTEEECTTCCEEECCCTTCEECCSSCC
T ss_pred CCCCCHHHHHH----CCCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCHHHEEECCCCCEEEECCCCCEECCCCCC
T ss_conf 89982898876----169899999999999999999999889---04465787778985899989803726547778876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 567432244466018112267987931439999999999994999998888
Q 004580 671 QGNTKRIVGTYGYMSPEYALDGLFSIKSDVFSFGILMLETLSGKKNTGVYN 721 (744)
Q Consensus 671 ~~~~~~~~gt~~y~APE~~~~~~~t~~~DvwSlGviL~eLltG~~p~~~~~ 721 (744)
.....+||+.|||||++.+..|+.++|||||||++|||++|++||...+
T Consensus 303 --~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~ 351 (423)
T 4fie_A 303 --RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP 351 (423)
T ss_dssp --CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC
T ss_pred --CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf --4346664747279999779999968999999999999997879989869
No 6
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=341.35 Aligned_cols=201 Identities=26% Similarity=0.390 Sum_probs=179.8
Q ss_pred HCCCCCCCCCCCCCCEEEECCCCC-CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCEEEEEEEE
Q ss_conf 039652222374681379811004-6640588832677813099999999999981388703477799975959999993
Q 004580 512 TENFSMQCKLGEGGFGPVYKGRLL-NGQEVAVKRLSSQSGQGLEEFKNEMMLIAKLQHRNLVKLLGCCVEQGEKILILEY 590 (744)
Q Consensus 512 ~~~y~~~~~LG~G~fg~Vy~~~~~-~g~~vavK~l~~~~~~~~~~f~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lV~E~ 590 (744)
.+.|++.++||+|+||.||+|+++ +++.||||++........+.+.+|+.+++.++|||||++++++.+.+..|+||||
T Consensus 73 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 152 (346)
T 4fih_A 73 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 152 (346)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred HHHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 57538707960272829999999899989999998527656899999999999867998999199999989999999969
Q ss_pred CCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEECCCCEEEEEECCCEECCCCCC
Q ss_conf 07999113322768766689999999999999999998844999728704799988992898459974257411289864
Q 004580 591 MPNKSLDVFLFDPTKKRLLGWQARVTIIEGIAQGLLYLHQYSRFRIIHRDLKASNVLLDMDMNPKISDFGLARMFGGDEL 670 (744)
Q Consensus 591 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFgla~~~~~~~~ 670 (744)
+++|+|..++. +..+++.++..++.||+.||.|||+++ |+||||||+|||++.++.+||+|||+|+.+.....
T Consensus 153 ~~gg~L~~~l~----~~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~ 225 (346)
T 4fih_A 153 LEGGALTDIVT----HTRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP 225 (346)
T ss_dssp CTTEEHHHHHH----HSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC
T ss_pred CCCCCHHHHHH----CCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEECCCCCEECCCCCC
T ss_conf 89980899987----189899999999999999999999888---35562788997887999889902757536678877
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 567432244466018112267987931439999999999994999998888
Q 004580 671 QGNTKRIVGTYGYMSPEYALDGLFSIKSDVFSFGILMLETLSGKKNTGVYN 721 (744)
Q Consensus 671 ~~~~~~~~gt~~y~APE~~~~~~~t~~~DvwSlGviL~eLltG~~p~~~~~ 721 (744)
.....+||+.|+|||++.+..|+.++|||||||++|||++|++||...+
T Consensus 226 --~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~ 274 (346)
T 4fih_A 226 --RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP 274 (346)
T ss_dssp --CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC
T ss_pred --CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf --5346562758279999779999968999999999999997879989859
No 7
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=341.22 Aligned_cols=216 Identities=34% Similarity=0.511 Sum_probs=183.9
Q ss_pred CCCCCCCCCCCCCCEEEECCCCC------CCCEEEEEECCCC-CHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCEEE
Q ss_conf 39652222374681379811004------6640588832677-8130999999999999813887034777999759599
Q 004580 513 ENFSMQCKLGEGGFGPVYKGRLL------NGQEVAVKRLSSQ-SGQGLEEFKNEMMLIAKLQHRNLVKLLGCCVEQGEKI 585 (744)
Q Consensus 513 ~~y~~~~~LG~G~fg~Vy~~~~~------~g~~vavK~l~~~-~~~~~~~f~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~ 585 (744)
.++++.++||+|+||.||+|++. .++.||||+++.. .....++|.+|+.++.+++|||||+++|++.+.+..+
T Consensus 26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~ 105 (308)
T 4gt4_A 26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLS 105 (308)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEE
T ss_conf 88858669135888489999985776588886999999880149689999999999998589989877364998899889
Q ss_pred EEEEECCCCCHHHHHCCCC-------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEECCC
Q ss_conf 9999307999113322768-------------766689999999999999999998844999728704799988992898
Q 004580 586 LILEYMPNKSLDVFLFDPT-------------KKRLLGWQARVTIIEGIAQGLLYLHQYSRFRIIHRDLKASNVLLDMDM 652 (744)
Q Consensus 586 lV~E~~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~DLkp~NILl~~~~ 652 (744)
+||||+++|+|..+|.... ....+++.+++.|+.||+.||.|||+.+ |+||||||+|||+++++
T Consensus 106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLK~~NILl~~~~ 182 (308)
T 4gt4_A 106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKL 182 (308)
T ss_dssp EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGG
T ss_pred EEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCEEECCCC
T ss_conf 999818999499999862765433332211112468999999999999999999998689---97787362306887999
Q ss_pred CEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 459974257411289864567432244466018112267987931439999999999994-9999988888864310001
Q 004580 653 NPKISDFGLARMFGGDELQGNTKRIVGTYGYMSPEYALDGLFSIKSDVFSFGILMLETLS-GKKNTGVYNADSFNLLGYV 731 (744)
Q Consensus 653 ~~kl~DFgla~~~~~~~~~~~~~~~~gt~~y~APE~~~~~~~t~~~DvwSlGviL~eLlt-G~~p~~~~~~~~~~l~~~~ 731 (744)
.+||+|||+++.+.............||+.|+|||++.+..++.++|||||||+||||+| |+.||...+... +...+
T Consensus 183 ~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~--~~~~i 260 (308)
T 4gt4_A 183 NVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQD--VVEMI 260 (308)
T ss_dssp CEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHH--HHHHH
T ss_pred CEEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHH--HHHHH
T ss_conf 7898876020233677740473451257765698998279999630001579999999968999999989999--99999
Q ss_pred CC
Q ss_conf 03
Q 004580 732 SN 733 (744)
Q Consensus 732 ~~ 733 (744)
.+
T Consensus 261 ~~ 262 (308)
T 4gt4_A 261 RN 262 (308)
T ss_dssp HT
T ss_pred HC
T ss_conf 81
No 8
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=1.00 E-value=1 Score=339.44 Aligned_cols=221 Identities=28% Similarity=0.353 Sum_probs=189.6
Q ss_pred CCCCCCCCCCCCCCEEEECCCCC----CCCEEEEEECCCCC--HHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCEEEE
Q ss_conf 39652222374681379811004----66405888326778--1309999999999998138870347779997595999
Q 004580 513 ENFSMQCKLGEGGFGPVYKGRLL----NGQEVAVKRLSSQS--GQGLEEFKNEMMLIAKLQHRNLVKLLGCCVEQGEKIL 586 (744)
Q Consensus 513 ~~y~~~~~LG~G~fg~Vy~~~~~----~g~~vavK~l~~~~--~~~~~~f~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~l 586 (744)
++|++.+.||+|+||.||+|+.. .++.||+|+++... ......+.+|+.++.+++|||||++++++.+.+..++
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i 103 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL 103 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred CCCEEEEEEECCCCEEEEEEEECCCCCCCEEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEE
T ss_conf 56589889721888399999985588789799999981577684789999999999987799799909999998999999
Q ss_pred EEEECCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEECCCCEEEEEECCCEECC
Q ss_conf 99930799911332276876668999999999999999999884499972870479998899289845997425741128
Q 004580 587 ILEYMPNKSLDVFLFDPTKKRLLGWQARVTIIEGIAQGLLYLHQYSRFRIIHRDLKASNVLLDMDMNPKISDFGLARMFG 666 (744)
Q Consensus 587 V~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFgla~~~~ 666 (744)
||||+++|+|..++. ....+++.++..++.|++.||.|||+++ |+||||||+|||++.++.+||+|||+|+...
T Consensus 104 vmEy~~gg~L~~~l~---~~~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~ 177 (304)
T 3ubd_A 104 ILDFLRGGDLFTRLS---KEVMFTEEDVKFYLAELALALDHLHSLG---IIYRDLKPENILLDEEGHIKLTDFGLSKESI 177 (304)
T ss_dssp EECCCTTCEEHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCCGGGEEECTTSCEEEESSEEEEC--
T ss_pred EEECCCCCCHHHHHH---HCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEECCCCCCEECC
T ss_conf 997579988899997---5599999999999999999999999779---9588887899578689988762366343326
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98645674322444660181122679879314399999999999949999988888864310001036644422546
Q 004580 667 GDELQGNTKRIVGTYGYMSPEYALDGLFSIKSDVFSFGILMLETLSGKKNTGVYNADSFNLLGYVSNKSLHFYLIFS 743 (744)
Q Consensus 667 ~~~~~~~~~~~~gt~~y~APE~~~~~~~t~~~DvwSlGviL~eLltG~~p~~~~~~~~~~l~~~~~~~~~~f~~~~~ 743 (744)
... ......+||+.|+|||++.+..++.++||||+||++|||+||++||...+... +...+.+....+|..+|
T Consensus 178 ~~~--~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~--~~~~i~~~~~~~p~~~s 250 (304)
T 3ubd_A 178 DHE--KKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKE--TMTMILKAKLGMPQFLS 250 (304)
T ss_dssp -----CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHHHHHCCCCCCTTSC
T ss_pred CCC--CCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHH--HHHHHHCCCCCCCCCCC
T ss_conf 887--63045441815079999656887877763611999999985989989849999--99999718999987689
No 9
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A*
Probab=1.00 E-value=1 Score=337.77 Aligned_cols=235 Identities=18% Similarity=0.184 Sum_probs=182.4
Q ss_pred HHCCCCCCCCCCCCCCCCEEEECCCEEEEEEECCCCCCCEEEEEEEECCCCCEEEEECCCCCCCCC----CCEEEEEECC
Q ss_conf 111443115883246997465279907998977999997299997505898079970599998789----8418992078
Q 004580 21 VSLAADTVTPASFIRDGEKLVSFSQRFELGFFSPGKSKSRYLGIWFRQVPDTVVWVANRDRPISDH----NAVLTISNKG 96 (744)
Q Consensus 21 ~~~~~~~l~~~~~l~~~~~l~s~~~~f~lgf~~~~~~~~~y~~iw~~~~~~~~vW~an~~~p~~~~----~~~l~~~~~g 96 (744)
++++.|+|++|++|+++++|+|++|.|+||||+++ ++|+ |+ ..+ +||+|||++|+.++ +++|+|+.||
T Consensus 10 ~~~~~~~l~~g~~l~~~~~l~S~~g~F~lgf~~~~---~~~l---y~-~~~-vvW~Anr~~p~~~~~~~~~~~l~l~~~G 81 (276)
T 3m7h_A 10 NGVGTSVLPAYQTLSAGQYLLSPNQRFKLLLQGDG---NLVI---QD-NGA-TVWVANEQQPFSSTIPLRNKKAPLAFYV 81 (276)
T ss_dssp CCTTSSEECTTEEBCTTCEEECTTSSEEEEECTTS---CEEE---EE-TTE-EEEECSTTSTTEEEEECCCTTCCSEEEE
T ss_pred CCCCCCEECCCCEECCCCEEECCCCCEEEEEECCC---CEEE---EC-CCC-EEEECCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 34447874699876699989809995899997899---7699---87-997-2998988877677555653289995798
Q ss_pred CEEE--ECCCCCEEEEEEEECC-----CCCCEEEECCCCCEEEECCCCCCCCCCEECEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4899--5599963999721024-----67733999169987997089987655302000357840022688335201578
Q 004580 97 NLVL--LNQTNGTIWSTNVFSE-----VKNPVAQLRDDGNLVIRDNSSGNTTESYLWQSFDYPTDTLLQGMKMGWDLKNR 169 (744)
Q Consensus 97 ~l~l--~~~~~~~~ws~~~~~~-----~~~~~~~l~~~gn~v~~~~~~~~~~~~~~wqSFd~PtDtlLpg~kl~~~~~t~ 169 (744)
+||| .|+++.+||+|+++.. ..+++|+|+|+|||||++ +.++||| |||||+|||||+++++++|
T Consensus 82 ~Lvl~~~~~~~~~vWst~~~~~~~~~~~~~~~a~L~d~GNlVl~~-------~~~lWqS--~ptdtlLpg~~~~~~l~~g 152 (276)
T 3m7h_A 82 QYGAFLDDYSRRRVWLTDNSTFTSNDQWNRTHLVLQDDGNIVLVD-------SLALWNG--TPAIPLVPGAIDSLLLAPG 152 (276)
T ss_dssp SSSEEEEEGGGTEEEEECCCCCCCTTHHHHEEEEECTTSCEEEEE-------EEEEEES--CTTSCCCCSCTTCEEECSS
T ss_pred CEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCEEECC-------CCEEECC--CCCCCCCCCCCCCCCCCCC
T ss_conf 699987579997899847876545556786699994899989548-------9521175--4331402454112111258
Q ss_pred CCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEE-CCEEEEECCCCCCCEEEEEECCCCCCEEEEEEEECCCEEEEEEC
Q ss_conf 71589980379999998425632116876499990-98002650789993255310133210037996507605999922
Q 004580 170 LERYLSSWQSDDDPSPGKFTSRLEIKVIPKMCIFN-GSVKFACSGQWNGAAFVSAISYTNFLYEQYLVENQDEISYWYEP 248 (744)
Q Consensus 170 ~~~~LtSw~s~~dps~G~f~~~l~~~g~~~~~~~~-~~~~~~~sg~w~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (744)
.. | ++.+||++|.|+++++.+|. +++++ ++.+||++++|++.... . .+... -.+.+..+.+ ..++++.
T Consensus 153 ~~--L---~S~~dps~G~fsl~l~~dGn--lvLy~~~~~~yW~Sgt~~~~~~~-l-~l~~d-GnLvl~d~~~-~~vWsS~ 221 (276)
T 3m7h_A 153 SE--L---VQGVVYGAGASKLVFQGDGN--LVAYGPNGAATWNAGTQGKGAVR-A-VFQGD-GNLVVYGAGN-AVLWHSH 221 (276)
T ss_dssp EE--E---CTTCEEEETTEEEEECTTSC--EEEECTTSSEEEECCCTTTTCCE-E-EECTT-SCEEEECTTS-CEEEECS
T ss_pred CC--C---CCCCCCCCCEEEEEECCCCE--EEEEECCCEEEEECCCCCCCCEE-E-EECCC-CEEEEEECCC-CEEEEEC
T ss_conf 63--2---24898889527885658825--99995999699988898984489-9-99588-7699995999-6899831
Q ss_pred CCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCC
Q ss_conf 69981559998668847899973599963899712767
Q 004580 249 FNRPSIMTLKLNPSGLLTRQIWNNNGNDWDLVFSFPDE 286 (744)
Q Consensus 249 ~~~~~~~rl~L~~~G~l~~~~w~~~~~~W~~~~~~p~~ 286 (744)
.......|++|+.||++++|.| ...|..++.+|+.
T Consensus 222 t~~~~~~rl~Ld~dGnLvly~~---~~~Wqsf~~~P~~ 256 (276)
T 3m7h_A 222 TGGHASAVLRLQANGSIAILDE---KPVWARFGFQPTY 256 (276)
T ss_dssp CTTCTTCEEEECTTSCEEEEEE---EEEEESSSCCTTS
T ss_pred CCCCCCEEEEECCCCCEEEECC---CCEEECCCCCCCC
T ss_conf 7998888999968942999838---8867725745776
No 10
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=334.59 Aligned_cols=204 Identities=29% Similarity=0.491 Sum_probs=175.5
Q ss_pred HHCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCC--CHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCEEEEEE
Q ss_conf 70396522223746813798110046640588832677--8130999999999999813887034777999759599999
Q 004580 511 ATENFSMQCKLGEGGFGPVYKGRLLNGQEVAVKRLSSQ--SGQGLEEFKNEMMLIAKLQHRNLVKLLGCCVEQGEKILIL 588 (744)
Q Consensus 511 ~~~~y~~~~~LG~G~fg~Vy~~~~~~g~~vavK~l~~~--~~~~~~~f~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lV~ 588 (744)
..+++++.++||+|+||.||+|++.. .||||.++.. .....++|.+|+.++.+++|||||++++++.+ +..++||
T Consensus 34 ~~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVm 110 (307)
T 3omv_A 34 EASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVT 110 (307)
T ss_dssp CTTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEE
T ss_pred CHHHEEEEEEEEECCCCEEEEEEECC--CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEEEEE
T ss_conf 47994984498208886899999899--68999997268999999999999999985899887469999978-9589999
Q ss_pred EECCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEECCCCEEEEEECCCEECCCC
Q ss_conf 93079991133227687666899999999999999999988449997287047999889928984599742574112898
Q 004580 589 EYMPNKSLDVFLFDPTKKRLLGWQARVTIIEGIAQGLLYLHQYSRFRIIHRDLKASNVLLDMDMNPKISDFGLARMFGGD 668 (744)
Q Consensus 589 E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFgla~~~~~~ 668 (744)
||+++|+|..+|+. ....+++.+++.|+.|++.||.|||+.+ |+||||||+|||+++++.+||+|||+|+.....
T Consensus 111 Ey~~gGsL~~~l~~--~~~~l~~~~~~~i~~qia~gL~yLH~~~---IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~ 185 (307)
T 3omv_A 111 QWCEGSSLYKHLHV--QETKFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRW 185 (307)
T ss_dssp ECCSSCBHHHHHHT--SCCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCSSSEEEETTEEEEECCCSSCBC----
T ss_pred ECCCCCCHHHHHHH--CCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf 74899878898752--4899999999999999999999997799---527855789978889990899441575424667
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 64567432244466018112267---9879314399999999999949999988888
Q 004580 669 ELQGNTKRIVGTYGYMSPEYALD---GLFSIKSDVFSFGILMLETLSGKKNTGVYNA 722 (744)
Q Consensus 669 ~~~~~~~~~~gt~~y~APE~~~~---~~~t~~~DvwSlGviL~eLltG~~p~~~~~~ 722 (744)
.........+||+.|||||++.+ ..|+.++|||||||+||||+||+.||...+.
T Consensus 186 ~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~ 242 (307)
T 3omv_A 186 SGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINN 242 (307)
T ss_dssp --------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCC
T ss_pred CCCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 764031564468772498786146899878687757289999999978899899996
Done!