BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004581
(744 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 19/156 (12%)
Query: 96 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIR 155
+ RRV D V+++ D + +L + RV S+ + DG + SGS D IR
Sbjct: 248 DGRRVVSGAYDFMVKVW---DPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIR 302
Query: 156 SWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTL-- 213
WD + G I+ +T G L SG E L+ LVS ++ +V+ WD + G
Sbjct: 303 VWDVETGNCIHTLT-GHQSLTSGME--------LKDNILVSGNADSTVKIWDIKTGQCLQ 353
Query: 214 -LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248
LQ + H+ V L + N V ++ DG V L+
Sbjct: 354 TLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLW 387
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 15/170 (8%)
Query: 96 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIR 155
+ + +A A DD V+++ + +L+ ++L S V V +S DG + S S D ++
Sbjct: 273 DGQTIASASDDKTVKLWN--RNGQLL--QTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 328
Query: 156 SWDAKLGYEIYRITVGLGGLGSGPELCIWSL-LSLRCGTLVSADSTGSVQFWDSRHGTLL 214
W+ + G + +T G +W + S T+ SA +V+ W+ R+G LL
Sbjct: 329 LWN-RNGQHLQTLT--------GHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLL 378
Query: 215 QAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSS 264
Q + H V +A +P + S D V L+ + + + G SSS
Sbjct: 379 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS 428
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 15/170 (8%)
Query: 96 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIR 155
+ + +A A DD V+++ + +L+ ++L S V V +S DG + S S D ++
Sbjct: 109 DGQTIASASDDKTVKLWN--RNGQLL--QTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 164
Query: 156 SWDAKLGYEIYRITVGLGGLGSGPELCIWSL-LSLRCGTLVSADSTGSVQFWDSRHGTLL 214
W+ + G + +T G +W + S T+ SA +V+ W+ R+G LL
Sbjct: 165 LWN-RNGQLLQTLT--------GHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLL 214
Query: 215 QAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSS 264
Q + H V +A +P + S D V L+ + + + G SSS
Sbjct: 215 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS 264
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 15/170 (8%)
Query: 96 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIR 155
+ + +A A DD V+++ + +L+ ++L S V V +S DG + S S D ++
Sbjct: 355 DGQTIASASDDKTVKLWN--RNGQLL--QTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 410
Query: 156 SWDAKLGYEIYRITVGLGGLGSGPELCIWSL-LSLRCGTLVSADSTGSVQFWDSRHGTLL 214
W+ + G + +T G +W + S T+ SA +V+ W+ R+G LL
Sbjct: 411 LWN-RNGQLLQTLT--------GHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLL 460
Query: 215 QAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSS 264
Q + H V +A +P + S D V L+ + + + G SSS
Sbjct: 461 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS 510
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 17/156 (10%)
Query: 96 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIR 155
+D+ +A A DD V+++ + +L+ ++L S V V +S DG + S S D ++
Sbjct: 437 DDQTIASASDDKTVKLWN--RNGQLL--QTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 492
Query: 156 SWD--AKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTL 213
W+ +L + + + G+ P+ T+ SA +V+ W+ R+G L
Sbjct: 493 LWNRNGQLLQTLTGHSSSVRGVAFSPD----------GQTIASASDDKTVKLWN-RNGQL 541
Query: 214 LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK 249
LQ + H V +A +P + S SD V L+
Sbjct: 542 LQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 17/171 (9%)
Query: 96 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIR 155
+ + +A A DD V+++ + +L+ ++L S V V +S DG + S S D ++
Sbjct: 150 DGQTIASASDDKTVKLWN--RNGQLL--QTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 205
Query: 156 SWD--AKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTL 213
W+ +L + + + G+ P+ T+ SA +V+ W+ R+G L
Sbjct: 206 LWNRNGQLLQTLTGHSSSVRGVAFSPD----------GQTIASASDDKTVKLWN-RNGQL 254
Query: 214 LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSS 264
LQ + H VN +A P + S D V L+ + + + G SSS
Sbjct: 255 LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS 305
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 11/136 (8%)
Query: 130 SGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSL-LS 188
S V V +S DG + S S D ++ W+ + G + +T G +W + S
Sbjct: 16 SSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT--------GHSSSVWGVAFS 66
Query: 189 LRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248
T+ SA +V+ W+ R+G LLQ + H V +A +P + S D V L+
Sbjct: 67 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 125
Query: 249 KASCESIGPNDGLSSS 264
+ + + G SSS
Sbjct: 126 NRNGQLLQTLTGHSSS 141
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 76/171 (44%), Gaps = 17/171 (9%)
Query: 96 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIR 155
+ + +A A DD V+++ + +L+ ++L S V V +S D + S S D ++
Sbjct: 396 DGQTIASASDDKTVKLWN--RNGQLL--QTLTGHSSSVWGVAFSPDDQTIASASDDKTVK 451
Query: 156 SWD--AKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTL 213
W+ +L + + + G+ P+ T+ SA +V+ W+ R+G L
Sbjct: 452 LWNRNGQLLQTLTGHSSSVRGVAFSPD----------GQTIASASDDKTVKLWN-RNGQL 500
Query: 214 LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSS 264
LQ + H V +A +P + S D V L+ + + + G SSS
Sbjct: 501 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS 551
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 14/146 (9%)
Query: 106 DGCVRIYRITDSDE--LIYHRSLPRV--SGRVLSVTWSADGNMLYSGSSDGYIRSWD-AK 160
DG + +Y D + + SL V SG V +TWS DG + S S+D I+ W+ A
Sbjct: 211 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT 270
Query: 161 LGYEIYRITVGLGGLGSGPEL-CIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSF 219
L E T+ +G +L IW+ + LVS + G + F + G++ Q
Sbjct: 271 LKVE---KTIPVGTRIEDQQLGIIWTKQA-----LVSISANGFINFVNPELGSIDQVRYG 322
Query: 220 HKGDVNALAAAPSHNRVFSTGSDGQV 245
H + AL+++ +FS ++G +
Sbjct: 323 HNKAITALSSSADGKTLFSADAEGHI 348
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 112 YRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVG 171
Y + ++ EL + S + +V V+WS D L +GS D + W+ + I G
Sbjct: 518 YSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG 577
Query: 172 LGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWD 207
+ S + S++ L T+VSA +++FW+
Sbjct: 578 AHAMSS-----VNSVIWLNETTIVSAGQDSNIKFWN 608
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 133 VLSVTWSADGNMLYSGSSDGYIRSWDAKLG 162
+ +++ SADG L+S ++G+I SWD G
Sbjct: 327 ITALSSSADGKTLFSADAEGHINSWDISTG 356
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 5/143 (3%)
Query: 106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 165
DG +R++ + + R + VLSV +S D + S S D I+ W+ LG
Sbjct: 451 DGELRLWDLAAG---VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT-LGECK 506
Query: 166 YRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVN 225
Y I+ G G +S +L+ T+VSA +V+ W+ + L + H G V+
Sbjct: 507 YTISEGGEGHRDWVSCVRFSPNTLQP-TIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVS 565
Query: 226 ALAAAPSHNRVFSTGSDGQVILY 248
+A +P + S G DG V+L+
Sbjct: 566 TVAVSPDGSLCASGGKDGVVLLW 588
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 135 SVTWSADGNMLYSGSSDGYIRSW 157
S+ WSADG+ L+SG +DG IR W
Sbjct: 667 SLNWSADGSTLFSGYTDGVIRVW 689
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 165
D V+++ +++ +L +G V +V S DG++ SG DG + WD G ++
Sbjct: 540 DKTVKVWNLSNCK---LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL 596
Query: 166 YRI 168
Y +
Sbjct: 597 YSL 599
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 64/158 (40%), Gaps = 26/158 (16%)
Query: 100 VALACDDGCVRIYRITDSD---------------ELIYHRSLPRVSGRVLSVTWSADGNM 144
+A C+ ++YR++D E + S P + SV +S DG
Sbjct: 79 LATGCNK-TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF 137
Query: 145 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSV 203
L +G+ D IR WD E +I + L G E I+SL G LVS +V
Sbjct: 138 LATGAEDRLIRIWD----IENRKIVMIL----QGHEQDIYSLDYFPSGDKLVSGSGDRTV 189
Query: 204 QFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS 241
+ WD R G S G V +A +P + + GS
Sbjct: 190 RIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGS 226
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 14/122 (11%)
Query: 140 ADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSAD 198
DG + +GS D +R WD++ G+ + R+ G+G + ++S++ R G ++VS
Sbjct: 217 GDGKYIAAGSLDRAVRVWDSETGFLVERLD-SENESGTGHKDSVYSVVFTRDGQSVVSGS 275
Query: 199 STGSVQFWDSRH------------GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVI 246
SV+ W+ ++ GT + HK V ++A + + S D V+
Sbjct: 276 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 335
Query: 247 LY 248
+
Sbjct: 336 FW 337
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 195 VSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVF-STGSDGQVILY 248
VS SV+ WD +L++++ H +VN +AA P + +F S G DG+++L+
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 97 DRRVALACDDGCVRIYRITDSDELIY----HRSLPRVSGRVLSVTWSADGNMLYSGSSDG 152
+R A + +RI+ + + D ++ H+ ++ +S+ WSADG+ LYSG +D
Sbjct: 248 NRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDN 307
Query: 153 YIRSW 157
IR W
Sbjct: 308 VIRVW 312
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Query: 133 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG 192
VLSV +S D + SG D +R W+ K G ++ ++ G + C+ SL
Sbjct: 112 VLSVAFSPDNRQIVSGGRDNALRVWNVK-GECMHTLSR---GAHTDWVSCVRFSPSLDAP 167
Query: 193 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248
+VS V+ WD G L+ H V ++ +P + S+ DG L+
Sbjct: 168 VIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223
>pdb|1FLG|A Chain A, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
pdb|1FLG|B Chain B, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
Length = 582
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 11/74 (14%)
Query: 110 RIYRITDSDELIYHRSLPRVSGRVL----------SVTWSADGNMLYSGSSDGYIRSWDA 159
RI R+ D D + R++ VSG+V+ + + GN++++G+ DGY +++DA
Sbjct: 456 RIKRMYD-DHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDA 514
Query: 160 KLGYEIYRITVGLG 173
K G E+++ G G
Sbjct: 515 KSGKELWKFQTGSG 528
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 194 LVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD 242
VS S + WD R G Q + H+ D+NA+ P+ N F+TGSD
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN-AFATGSD 246
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 194 LVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD 242
VS S + WD R G Q + H+ D+NA+ P+ N F+TGSD
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN-AFATGSD 246
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 194 LVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD 242
VS S + WD R G Q + H+ D+NA+ P+ N F+TGSD
Sbjct: 210 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN-AFATGSD 257
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 194 LVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD 242
VS S + WD R G Q + H+ D+NA+ P+ N F+TGSD
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN-AFATGSD 246
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 194 LVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD 242
VS S + WD R G Q + H+ D+NA+ P+ N F+TGSD
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN-AFATGSD 246
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 15/150 (10%)
Query: 100 VALAC---DDGCVRIYRIT-DSDELIY--HRSLPRVSGRVLSVTWSADGNMLYSGSSDGY 153
A+AC D+ C +Y +T D +E + +S+ + + + +++ + + S DG
Sbjct: 119 CAIACGGLDNKC-SVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 177
Query: 154 IRSWDAKLGYEIYRITVGLGGLGSGPE-LCIWSLLSLRCGTLVSADSTGSVQFWDSRHGT 212
WD + G + G G + LC+ S T VS WD R G
Sbjct: 178 CALWDVESGQLLQSFH------GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ 231
Query: 213 LLQAHSFHKGDVNALAAAPSHNRVFSTGSD 242
+QA H+ DVN++ PS + F++GSD
Sbjct: 232 CVQAFETHESDVNSVRYYPSGD-AFASGSD 260
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 11/119 (9%)
Query: 130 SGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSL 189
+ R+ S + + S S D IR WD + G +Y + +G LL L
Sbjct: 310 TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVG---------LLRL 360
Query: 190 RCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248
LVSA + GS++ WD+ + + S+H +++A+ + + +GS+ Q +Y
Sbjct: 361 SDKFLVSAAADGSIRGWDANDYS--RKFSYHHTNLSAITTFYVSDNILVSGSENQFNIY 417
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 64/155 (41%), Gaps = 16/155 (10%)
Query: 141 DGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADST 200
+ N + +G+ D IR +D+ + ++ SG + +W+L G LVS +
Sbjct: 131 EDNYVITGADDKMIRVYDSINKKFLLQL--------SGHDGGVWALKYAHGGILVSGSTD 182
Query: 201 GSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHN-RVFSTGS-DGQVILYKASCESIGPN 258
+V+ WD + G H V L N + TGS D + ++K ES P+
Sbjct: 183 RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD 242
Query: 259 DGLSSSEVI------KKWIYVGSVRAHTHDVRALT 287
G + + +VG +R H VR ++
Sbjct: 243 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS 277
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 96 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIR 155
ED V DD +R+Y DS + L G V ++ + A G +L SGS+D +R
Sbjct: 131 EDNYVITGADDKMIRVY---DSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVR 186
Query: 156 SWDAKLG 162
WD K G
Sbjct: 187 VWDIKKG 193
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 130 SGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSL 189
+ R+ S + + S S D IR WD + G Y + +G LL L
Sbjct: 310 TDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVG---------LLRL 360
Query: 190 RCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248
LVSA + GS++ WD+ + + S+H +++A+ + + +GS+ Q +Y
Sbjct: 361 SDKFLVSAAADGSIRGWDANDYS--RKFSYHHTNLSAITTFYVSDNILVSGSENQFNIY 417
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 64/155 (41%), Gaps = 16/155 (10%)
Query: 141 DGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADST 200
+ N + +G+ D IR +D+ + ++ SG + +W+L G LVS +
Sbjct: 131 EDNYVITGADDKXIRVYDSINKKFLLQL--------SGHDGGVWALKYAHGGILVSGSTD 182
Query: 201 GSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHN-RVFSTGS-DGQVILYKASCESIGPN 258
+V+ WD + G H V L N + TGS D + ++K ES P+
Sbjct: 183 RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD 242
Query: 259 DGLSSSEVI------KKWIYVGSVRAHTHDVRALT 287
G + + +VG +R H VR ++
Sbjct: 243 HGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVS 277
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 96 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIR 155
ED V DD +R+Y DS + L G V ++ + A G +L SGS+D +R
Sbjct: 131 EDNYVITGADDKXIRVY---DSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVR 186
Query: 156 SWDAKLG 162
WD K G
Sbjct: 187 VWDIKKG 193
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 61/155 (39%), Gaps = 31/155 (20%)
Query: 106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 165
DG +R++ +T R + VLSV +S+D + SGS D I+ W+ LG
Sbjct: 84 DGTLRLWDLTTGTTT---RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT-LGVCK 139
Query: 166 YRI----------TVGLGGLGSGPEL--CIWSLLSLRCGTLVSADSTGSVQFWDSRHGTL 213
Y + V S P + C W L V+ W+ + L
Sbjct: 140 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL---------------VKVWNLANCKL 184
Query: 214 LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248
H H G +N + +P + S G DGQ +L+
Sbjct: 185 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 219
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 132 RVLSVTWSADGNMLYSGSSDGYIRSWDAKLG 162
+ S+ WSADG L++G +D +R W +G
Sbjct: 285 QCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 315
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
Query: 130 SGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVG--LGGL-----------G 176
+G + +VT S DG++ SG DG WD G +Y + G + L
Sbjct: 192 TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAA 251
Query: 177 SGPELCIWSL 186
+GP + IW L
Sbjct: 252 TGPSIKIWDL 261
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 61/155 (39%), Gaps = 31/155 (20%)
Query: 106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 165
DG +R++ +T R + VLSV +S+D + SGS D I+ W+ LG
Sbjct: 107 DGTLRLWDLTTGTTT---RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT-LGVCK 162
Query: 166 YRI----------TVGLGGLGSGPEL--CIWSLLSLRCGTLVSADSTGSVQFWDSRHGTL 213
Y + V S P + C W L V+ W+ + L
Sbjct: 163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL---------------VKVWNLANCKL 207
Query: 214 LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248
H H G +N + +P + S G DGQ +L+
Sbjct: 208 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 132 RVLSVTWSADGNMLYSGSSDGYIRSWDAKLG 162
+ S+ WSADG L++G +D +R W +G
Sbjct: 308 QCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
Query: 130 SGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVG--LGGL-----------G 176
+G + +VT S DG++ SG DG WD G +Y + G + L
Sbjct: 215 TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAA 274
Query: 177 SGPELCIWSL 186
+GP + IW L
Sbjct: 275 TGPSIKIWDL 284
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 20/139 (14%)
Query: 119 ELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSG 178
+L+ R+L SG+V S+ W+ + N + S S DG + W+A + + I +
Sbjct: 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLH------- 107
Query: 179 PELCIWSL--------LSLRCGTLVSADSTGSVQFWDSRHGTL--LQAHSFHKGDVNALA 228
C W + S+ CG L SA S ++ R G + + + HKG ++
Sbjct: 108 ---CPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQ 164
Query: 229 AAPSHNRVFSTGSDGQVIL 247
P TGS Q +
Sbjct: 165 YVPDQETRLITGSGDQTCV 183
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 145 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSG--PELCIWSLLSLRCGTLVSADSTGS 202
L +GS D WD G RI++ SG ++ S+ SL +S +
Sbjct: 173 LITGSGDQTCVLWDVTTGQ---RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTT 229
Query: 203 VQFWDSR-HGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD 242
V+ WD R ++ + H+GD+N++ P R F TGSD
Sbjct: 230 VRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR-FGTGSD 269
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 96 EDRRVALACDDGCVRIYRITDSDEL-IYHRSLPRVSGR---VLSVTWSADGNMLYSGSSD 151
+ +R DDG R++ + +L +Y+R R V SV +S G +L++G S+
Sbjct: 260 DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN 319
Query: 152 GYIRSWDAKLGYEIYRI 168
G WD L + +
Sbjct: 320 GDCYVWDTLLAEMVLNL 336
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 20/159 (12%)
Query: 100 VALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDA 159
+++ +G V IY + +L R++ RV ++W + ++L SGS G I D
Sbjct: 149 LSVGLGNGLVDIYDVESQTKL---RTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDV 203
Query: 160 KLGYEIYRITVGLGGL-GSGPELC--IWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQA 216
++ +G L G E+C W L+ L S + VQ WD+R
Sbjct: 204 RIANH------QIGTLQGHSSEVCGLAWRSDGLQ---LASGGNDNVVQIWDARSSIPKFT 254
Query: 217 HSFHKGDVNALAAAPSHNRVFSTGS---DGQVILYKASC 252
+ H V A+A P + + +TG D Q+ + A+
Sbjct: 255 KTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT 293
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 11/113 (9%)
Query: 130 SGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIW--SLL 187
S V + W +DG L SG +D ++ WDA+ + T + C W +LL
Sbjct: 217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAV-KAVAWCPWQSNLL 275
Query: 188 SLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKG-DVNALAAAPSHNRVFST 239
+ GT+ + FW++ G + ++ G V +L +P + ST
Sbjct: 276 ATGGGTM-----DKQIHFWNAATGA--RVNTVDAGSQVTSLIWSPHSKEIMST 321
>pdb|2FR7|A Chain A, Crystal Structure Of Cytochrome P450 Cyp199a2
pdb|4DNJ|A Chain A, The Crystal Structures Of 4-Methoxybenzoate Bound Cyp199a2
Length = 412
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 144 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSA 197
+++ GS++ R WD Y+I R T G G GSG +C+ L++ G +V A
Sbjct: 323 LMFLGSANRDPRRWDDPDRYDITRKTSGHVGFGSGVHMCVGQLVARLEGEVVLA 376
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 136 VTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLV 195
V WS+D N+L S S D ++ WD G + L G + C ++ S +V
Sbjct: 93 VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQS---NLIV 145
Query: 196 SADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG 243
S SV+ WD + G L+ H V+A+ + + S+ DG
Sbjct: 146 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 165
D VRI+ + L ++LP S V +V ++ DG+++ S S DG R WD G +
Sbjct: 150 DESVRIWDVKTGKCL---KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 206
Query: 166 YRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 223
+ P + S +++A +++ WD G L+ ++ HK +
Sbjct: 207 KTLID-----DDNPPVSF-VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 258
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 133 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG 192
V SV +S +G L S S+D I+ W A G + + G G WS S
Sbjct: 48 VSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS---N 100
Query: 193 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248
LVSA +++ WD G L+ H V P N + S D V ++
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 103 ACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG 162
A DD ++I+ ++ L ++L S V ++ N++ SGS D +R WD K G
Sbjct: 105 ASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 161
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 136 VTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLV 195
V WS+D N+L S S D ++ WD G + L G + C ++ S +V
Sbjct: 67 VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQS---NLIV 119
Query: 196 SADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG 243
S SV+ WD + G L+ H V+A+ + + S+ DG
Sbjct: 120 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 167
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 165
D VRI+ + L ++LP S V +V ++ DG+++ S S DG R WD G +
Sbjct: 124 DESVRIWDVKTGKCL---KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 180
Query: 166 YRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 223
+ P + S +++A +++ WD G L+ ++ HK +
Sbjct: 181 KTLID-----DDNPPVSF-VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 232
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 133 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG 192
V SV +S +G L S S+D I+ W A G + + G G WS S
Sbjct: 22 VSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS---N 74
Query: 193 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248
LVSA +++ WD G L+ H V P N + S D V ++
Sbjct: 75 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 130
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 103 ACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG 162
A DD ++I+ ++ L ++L S V ++ N++ SGS D +R WD K G
Sbjct: 79 ASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 135
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 136 VTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLV 195
V WS+D N+L S S D ++ WD G + L G + C ++ S +V
Sbjct: 95 VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQS---NLIV 147
Query: 196 SADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG 243
S SV+ WD + G L+ H V+A+ + + S+ DG
Sbjct: 148 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 195
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 165
D VRI+ + L ++LP S V +V ++ DG+++ S S DG R WD G +
Sbjct: 152 DESVRIWDVKTGKCL---KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 208
Query: 166 YRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 223
+ P + S +++A +++ WD G L+ ++ HK +
Sbjct: 209 KTLID-----DDNPPVSF-VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 260
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 133 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG 192
V SV +S +G L S S+D I+ W A G + + G G WS S
Sbjct: 50 VSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS---N 102
Query: 193 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248
LVSA +++ WD G L+ H V P N + S D V ++
Sbjct: 103 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 158
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 103 ACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG 162
A DD ++I+ ++ L ++L S V ++ N++ SGS D +R WD K G
Sbjct: 107 ASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 163
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 136 VTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLV 195
V WS+D N+L S S D ++ WD G + L G + C ++ S +V
Sbjct: 71 VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQS---NLIV 123
Query: 196 SADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG 243
S SV+ WD + G L+ H V+A+ + + S+ DG
Sbjct: 124 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 165
D VRI+ + L ++LP S V +V ++ DG+++ S S DG R WD G +
Sbjct: 128 DESVRIWDVKTGKCL---KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 184
Query: 166 YRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 223
+ P + S +++A +++ WD G L+ ++ HK +
Sbjct: 185 KTLID-----DDNPPVSF-VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 236
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 133 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG 192
V SV +S +G L S S+D I+ W A G + + G G WS S
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS---N 78
Query: 193 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248
LVSA +++ WD G L+ H V P N + S D V ++
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 103 ACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG 162
A DD ++I+ ++ L ++L S V ++ N++ SGS D +R WD K G
Sbjct: 83 ASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 139
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 136 VTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLV 195
V WS+D N+L S S D ++ WD G + L G + C ++ S +V
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQS---NLIV 129
Query: 196 SADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG 243
S SV+ WD + G L+ H V+A+ + + S+ DG
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 165
D VRI+ + L ++LP S V +V ++ DG+++ S S DG R WD G +
Sbjct: 134 DESVRIWDVKTGKCL---KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 190
Query: 166 YRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 223
+ P + S +++A +++ WD G L+ ++ HK +
Sbjct: 191 KTLID-----DDNPPVSF-VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 242
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 133 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG 192
V SV +S +G L S S+D I+ W A G + + G G WS S
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS---N 84
Query: 193 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248
LVSA +++ WD G L+ H V P N + S D V ++
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 103 ACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG 162
A DD ++I+ ++ L ++L S V ++ N++ SGS D +R WD K G
Sbjct: 89 ASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 145
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 136 VTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLV 195
V WS+D N+L S S D ++ WD G + L G + C ++ S +V
Sbjct: 88 VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQS---NLIV 140
Query: 196 SADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG 243
S SV+ WD + G L+ H V+A+ + + S+ DG
Sbjct: 141 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 188
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 165
D VRI+ + L ++LP S V +V ++ DG+++ S S DG R WD G +
Sbjct: 145 DESVRIWDVKTGKCL---KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 201
Query: 166 YRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 223
+ P + S +++A +++ WD G L+ ++ HK +
Sbjct: 202 KTLID-----DDNPPVSF-VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 253
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 133 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG 192
V SV +S +G L S S+D I+ W A G + + G G WS S
Sbjct: 43 VSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS---N 95
Query: 193 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248
LVSA +++ WD G L+ H V P N + S D V ++
Sbjct: 96 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 151
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 103 ACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG 162
A DD ++I+ ++ L ++L S V ++ N++ SGS D +R WD K G
Sbjct: 100 ASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 156
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 136 VTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLV 195
V WS+D N+L S S D ++ WD G + L G + C ++ S +V
Sbjct: 71 VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQS---NLIV 123
Query: 196 SADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG 243
S SV+ WD + G L+ H V+A+ + + S+ DG
Sbjct: 124 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 165
D VRI+ + L ++LP S V +V ++ DG+++ S S DG R WD G +
Sbjct: 128 DESVRIWDVKTGKCL---KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 184
Query: 166 YRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 223
+ P + S +++A +++ WD G L+ ++ HK +
Sbjct: 185 KTLID-----DDNPPVSF-VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 236
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 133 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG 192
V SV +S +G L S S+D I+ W A G + + G G WS S
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS---N 78
Query: 193 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248
LVSA +++ WD G L+ H V P N + S D V ++
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 103 ACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG 162
A DD ++I+ ++ L ++L S V ++ N++ SGS D +R WD K G
Sbjct: 83 ASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 139
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 136 VTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLV 195
V WS+D N+L S S D ++ WD G + L G + C ++ S +V
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQS---NLIV 126
Query: 196 SADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG 243
S SV+ WD + G L+ H V+A+ + + S+ DG
Sbjct: 127 SGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 133 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG 192
V SV +S +G L S S+D I+ W A G + + G G WS S
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS---N 81
Query: 193 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248
LVSA +++ WD G L+ H V P N + S D V ++
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 113 RITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGL 172
RI D + ++LP S V +V ++ DG+++ S S DG R WD G + +
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-- 192
Query: 173 GGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 223
P + S +++A ++ WD G L+ ++ HK +
Sbjct: 193 ---DDNPPVSF-VKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNE 239
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 103 ACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG 162
A DD ++I+ ++ L ++L S V ++ N++ SGS D +R WD K G
Sbjct: 86 ASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/150 (17%), Positives = 62/150 (41%), Gaps = 11/150 (7%)
Query: 461 RQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSE 520
+ LP ++ F+ D S ++ + +D + D +S + L T I
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL----------IDDDN 195
Query: 521 PPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQR-QHWFISRLEGASVTAAGFPPQNNNVL 579
PP++ + S +G+++ A D+ +++ + + A F +
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 580 IITTSSNQVYVFDVEAKQLGEWSMQHTFVL 609
+ + N VY+++++ K++ + HT V+
Sbjct: 256 VSGSEDNMVYIWNLQTKEIVQKLQGHTDVV 285
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 136 VTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLV 195
V WS+D N+L S S D ++ WD G + L G + C ++ S +V
Sbjct: 72 VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQS---NLIV 124
Query: 196 SADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG 243
S SV+ WD + G L+ H V+A+ + + S+ DG
Sbjct: 125 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 172
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 165
D VRI+ + L ++LP S V +V ++ DG+++ S S DG R WD G +
Sbjct: 129 DESVRIWDVKTGKCL---KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 185
Query: 166 YRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 223
+ P + S +++A +++ WD G L+ ++ HK +
Sbjct: 186 KTLID-----DDNPPVSF-VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 237
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 133 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG 192
V SV +S +G L S S+D I+ W A G + + G G WS S
Sbjct: 27 VSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS---N 79
Query: 193 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248
LVSA +++ WD G L+ H V P N + S D V ++
Sbjct: 80 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 135
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 103 ACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG 162
A DD ++I+ ++ L ++L S V ++ N++ SGS D +R WD K G
Sbjct: 84 ASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 140
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 136 VTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLV 195
V WS+D N+L S S D ++ WD G + L G + C ++ S +V
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQS---NLIV 126
Query: 196 SADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG 243
S SV+ WD + G L+ H V+A+ + + S+ DG
Sbjct: 127 SGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 133 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG 192
V SV +S +G L S S+D I+ W A G + + G G WS S
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS---N 81
Query: 193 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248
LVSA +++ WD G L+ H V P N + S D V ++
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
Query: 113 RITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGL 172
RI D + ++LP S V +V ++ DG+++ S S DG R WD G + +
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-- 192
Query: 173 GGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 223
P + S +++A +++ WD G L+ ++ HK +
Sbjct: 193 ---DDNPPVSF-VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 239
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 103 ACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG 162
A DD ++I+ ++ L ++L S V ++ N++ SGS D +R WD K G
Sbjct: 86 ASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 109 VRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWD 158
VR + + DS + I ++ +G VL V WS DG+ +++ S D + WD
Sbjct: 66 VRCWEVQDSGQTI-PKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD 114
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 136 VTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLV 195
V WS+D N+L S S D ++ WD G + L G + C ++ S +V
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQS---NLIV 129
Query: 196 SADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG 243
S SV+ WD + G L+ H V+A+ + + S+ DG
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 165
D VRI+ + L ++LP S V +V ++ DG+++ S S DG R WD G +
Sbjct: 134 DESVRIWDVKTGKCL---KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 190
Query: 166 YRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 223
+ P + S +++A +++ WD G L+ ++ HK +
Sbjct: 191 KTLID-----DDNPPVSF-VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 242
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 133 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG 192
V SV +S +G L S S+D I+ W A G + + G G WS S
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS---N 84
Query: 193 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248
LVSA +++ WD G L+ H V P N + S D V ++
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 103 ACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG 162
A DD ++I+ ++ L ++L S V ++ N++ SGS D +R WD K G
Sbjct: 89 ASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 145
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 136 VTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLV 195
V WS+D N+L S S D ++ WD G + L G + C ++ S +V
Sbjct: 70 VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQS---NLIV 122
Query: 196 SADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG 243
S SV+ WD + G L+ H V+A+ + + S+ DG
Sbjct: 123 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 170
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 165
D VRI+ + L ++LP S V +V ++ DG+++ S S DG R WD G +
Sbjct: 127 DESVRIWDVKTGKCL---KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 183
Query: 166 YRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 223
+ P + S +++A +++ WD G L+ ++ HK +
Sbjct: 184 KTLID-----DDNPPVSF-VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 235
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 133 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG 192
V SV +S +G L S S+D I+ W A G + + G G WS S
Sbjct: 25 VSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS---N 77
Query: 193 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248
LVSA +++ WD G L+ H V P N + S D V ++
Sbjct: 78 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 103 ACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG 162
A DD ++I+ ++ L ++L S V ++ N++ SGS D +R WD K G
Sbjct: 82 ASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 138
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 136 VTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLV 195
V WS+D N+L S S D ++ WD G + L G + C ++ S +V
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQS---NLIV 126
Query: 196 SADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG 243
S SV+ WD + G L+ H V+A+ + + S+ DG
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 71/188 (37%), Gaps = 44/188 (23%)
Query: 106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 165
D VRI+ + L ++LP S V +V ++ DG+++ S S DG R WD G +
Sbjct: 131 DESVRIWDVKTGKCL---KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 166 YRI---------------------------TVGLGGLGSGPEL-----------CIWSLL 187
+ T+ L G L CI++
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 247
Query: 188 SLRCGT-LVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTG--SDGQ 244
S+ G +VS V W+ + ++Q H V + A P+ N + S +D
Sbjct: 248 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 307
Query: 245 VILYKASC 252
+ LYK+ C
Sbjct: 308 IKLYKSDC 315
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 133 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG 192
V SV +S +G L S S+D I+ W A G + + G G WS S
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS---N 81
Query: 193 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248
LVSA +++ WD G L+ H V P N + S D V ++
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 103 ACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG 162
A DD ++I+ ++ L ++L S V ++ N++ SGS D +R WD K G
Sbjct: 86 ASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 136 VTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLV 195
V WS+D N+L S S D ++ WD G + L G + C ++ S +V
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQS---NLIV 126
Query: 196 SADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG 243
S SV+ WD + G L+ H V+A+ + + S+ DG
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 165
D VRI+ + L ++LP S V +V ++ DG+++ S S DG R WD G +
Sbjct: 131 DESVRIWDVKTGKCL---KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 166 YRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 223
+ P + S +++A +++ WD G L+ ++ HK +
Sbjct: 188 KTLID-----DDNPPVSF-VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 239
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 133 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG 192
V SV +S +G L S S+D I+ W A G + + G G WS S
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS---N 81
Query: 193 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248
LVSA +++ WD G L+ H V P N + S D V ++
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 103 ACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG 162
A DD ++I+ ++ L ++L S V ++ N++ SGS D +R WD K G
Sbjct: 86 ASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 136 VTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLV 195
V WS+D N+L S S D ++ WD G + L G + C ++ S +V
Sbjct: 76 VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQS---NLIV 128
Query: 196 SADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG 243
S SV+ WD + G L+ H V+A+ + + S+ DG
Sbjct: 129 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 176
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 165
D VRI+ + L ++LP S V +V ++ DG+++ S S DG R WD G +
Sbjct: 133 DESVRIWDVKTGKCL---KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 189
Query: 166 YRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 223
+ P + S +++A +++ WD G L+ ++ HK +
Sbjct: 190 KTLID-----DDNPPVSF-VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 241
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 133 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG 192
V SV +S +G L S S+D I+ W A G + + G G WS S
Sbjct: 31 VSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS---N 83
Query: 193 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248
LVSA +++ WD G L+ H V P N + S D V ++
Sbjct: 84 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 139
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 103 ACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG 162
A DD ++I+ ++ L ++L S V ++ N++ SGS D +R WD K G
Sbjct: 88 ASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 144
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 136 VTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLV 195
V WS+D N+L S S D ++ WD G + L G + C ++ S +V
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQS---NLIV 129
Query: 196 SADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG 243
S SV+ WD + G L+ H V+A+ + + S+ DG
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 165
D VRI+ + L ++LP S V +V ++ DG+++ S S DG R WD G +
Sbjct: 134 DESVRIWDVKTGKCL---KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 190
Query: 166 YRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 223
+ P + S +++A +++ WD G L+ ++ HK +
Sbjct: 191 KTLID-----DDNPPVSF-VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 242
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 133 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG 192
V SV +S +G L S S+D I+ W A G + + G G WS S
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS---N 84
Query: 193 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248
LVSA +++ WD G L+ H V P N + S D V ++
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 103 ACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG 162
A DD ++I+ ++ L ++L S V ++ N++ SGS D +R WD K G
Sbjct: 89 ASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 145
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 136 VTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLV 195
V WS+D N+L S S D ++ WD G + L G + C ++ S +V
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQS---NLIV 126
Query: 196 SADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG 243
S SV+ WD + G L+ H V+A+ + + S+ DG
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 165
D VRI+ + L ++LP S V +V ++ DG+++ S S DG R WD G +
Sbjct: 131 DESVRIWDVKTGKCL---KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 166 YRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 223
+ P + S +++A +++ WD G L+ ++ HK +
Sbjct: 188 KTLID-----DDNPPVSF-VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 239
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 133 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG 192
V SV +S +G L + S+D I+ W A G + + G G WS S
Sbjct: 29 VSSVKFSPNGEWLAASSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS---N 81
Query: 193 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248
LVSA +++ WD G L+ H V P N + S D V ++
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 103 ACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG 162
A DD ++I+ ++ L ++L S V ++ N++ SGS D +R WD K G
Sbjct: 86 ASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 61/150 (40%), Gaps = 26/150 (17%)
Query: 100 VALACDDGCVRIYRITDSDELIYHRSLPRVSGR---VLSVTWSADGNMLYSGSSDGYIRS 156
VA +DG ++I EL +R G V + ++ADG L S S D I+
Sbjct: 976 VAFGDEDGAIKII------ELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQV 1029
Query: 157 WDAKLG----YEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGT 212
W+ + G + ++ TV L L WS G+V+ W+ G
Sbjct: 1030 WNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSF-------------DGTVKVWNVITGR 1076
Query: 213 LLQAHSFHKGDVNALAAAPSHNRVFSTGSD 242
+ + + H+G V + A + + ST +D
Sbjct: 1077 IERDFTCHQGTVLSCAISSDATKFSSTSAD 1106
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 59/157 (37%), Gaps = 21/157 (13%)
Query: 94 VVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGY 153
+++D R+ DG V+++ + R G VLS S+D S S+D
Sbjct: 1052 LLQDSRLLSWSFDGTVKVWNVITGR---IERDFTCHQGTVLSCAISSDATKFSSTSADKT 1108
Query: 154 IRSWDAKLGYEIYRITVGLGGLGSGPELCI-WSLLSLRCGTLVSADSTGSVQFWDSRHGT 212
+ W L ++ + G C+ S SL L + D G ++ W+ G
Sbjct: 1109 AKIWSFDLLSPLHEL--------KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ 1160
Query: 213 LL---------QAHSFHKGDVNALAAAPSHNRVFSTG 240
LL + + H G V + +P + S G
Sbjct: 1161 LLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1197
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 61/150 (40%), Gaps = 26/150 (17%)
Query: 100 VALACDDGCVRIYRITDSDELIYHRSLPRVSGR---VLSVTWSADGNMLYSGSSDGYIRS 156
VA +DG ++I EL +R G V + ++ADG L S S D I+
Sbjct: 983 VAFGDEDGAIKII------ELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQV 1036
Query: 157 WDAKLG----YEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGT 212
W+ + G + ++ TV L L WS G+V+ W+ G
Sbjct: 1037 WNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSF-------------DGTVKVWNVITGR 1083
Query: 213 LLQAHSFHKGDVNALAAAPSHNRVFSTGSD 242
+ + + H+G V + A + + ST +D
Sbjct: 1084 IERDFTCHQGTVLSCAISSDATKFSSTSAD 1113
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 59/157 (37%), Gaps = 21/157 (13%)
Query: 94 VVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGY 153
+++D R+ DG V+++ + R G VLS S+D S S+D
Sbjct: 1059 LLQDSRLLSWSFDGTVKVWNVITGR---IERDFTCHQGTVLSCAISSDATKFSSTSADKT 1115
Query: 154 IRSWDAKLGYEIYRITVGLGGLGSGPELCI-WSLLSLRCGTLVSADSTGSVQFWDSRHGT 212
+ W L ++ + G C+ S SL L + D G ++ W+ G
Sbjct: 1116 AKIWSFDLLSPLHEL--------KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ 1167
Query: 213 LL---------QAHSFHKGDVNALAAAPSHNRVFSTG 240
LL + + H G V + +P + S G
Sbjct: 1168 LLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1204
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 20/169 (11%)
Query: 93 SVVEDRRVALACD-DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD 151
++ D AL+ D +R++ + + Y R + S V+SV +M+ SGS D
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGE--TYQRFVGHKS-DVMSVDIDKKASMIISGSRD 128
Query: 152 GYIRSWDAK-------LGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQ 204
I+ W K LG+ + V + + + T++SA + V+
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSV---------TIISAGNDKMVK 179
Query: 205 FWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE 253
W+ + H ++N L A+P + S G DG+++L+ + +
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 133 VLSVTWSADGNMLYSGSSDGYIRSW 157
+S+ WSADG L++G +D IR W
Sbjct: 289 AVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 20/169 (11%)
Query: 93 SVVEDRRVALACD-DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD 151
++ D AL+ D +R++ + + Y R + S V+SV +M+ SGS D
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGE--TYQRFVGHKS-DVMSVDIDKKASMIISGSRD 128
Query: 152 GYIRSWDAK-------LGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQ 204
I+ W K LG+ + V + + + T++SA + V+
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSV---------TIISAGNDKMVK 179
Query: 205 FWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE 253
W+ + H ++N L A+P + S G DG+++L+ + +
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 133 VLSVTWSADGNMLYSGSSDGYIRSW 157
+S+ WSADG L++G +D IR W
Sbjct: 289 AVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 90/219 (41%), Gaps = 40/219 (18%)
Query: 103 ACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG 162
A +D ++++ D + R+L + V +++ G +L S S+D I+ WD + G
Sbjct: 126 ASEDATIKVWDYETGD---FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ-G 181
Query: 163 YEIYRITVGLGGLGSGPELCIWSLLSLRCGT-LVSADSTGSVQFWDSRHGTLLQAHSFHK 221
+E R G + + S+ + G +VSA +++ W+ + G ++ + H+
Sbjct: 182 FECIRTM-------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR 234
Query: 222 GDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYV-----GSV 276
V R+ DG +I ASC S+ + ++ W+ +
Sbjct: 235 EWV----------RMVRPNQDGTLI---ASC---------SNDQTVRVWVVATKECKAEL 272
Query: 277 RAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDF 315
R H H V ++ A P S + E ++ KP F
Sbjct: 273 REHRHVVECISWA-PESSYSSISEATGSETKKSGKPGPF 310
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 20/169 (11%)
Query: 93 SVVEDRRVALACD-DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD 151
++ D AL+ D +R++ + + Y R + S V+SV +M+ SGS D
Sbjct: 66 TLTADGAYALSASWDKTLRLWDVATGE--TYQRFVGHKS-DVMSVDIDKKASMIISGSRD 122
Query: 152 GYIRSWDAK-------LGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQ 204
I+ W K LG+ + V + + + T++SA + V+
Sbjct: 123 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSV---------TIISAGNDKMVK 173
Query: 205 FWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE 253
W+ + H ++N L A+P + S G DG+++L+ + +
Sbjct: 174 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 222
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 133 VLSVTWSADGNMLYSGSSDGYIRSW 157
+S+ WSADG L++G +D IR W
Sbjct: 283 AVSLAWSADGQTLFAGYTDNVIRVW 307
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 20/169 (11%)
Query: 93 SVVEDRRVALACD-DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD 151
++ D AL+ D +R++ + + Y R + S V+SV +M+ SGS D
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGE--TYQRFVGHKS-DVMSVDIDKKASMIISGSRD 128
Query: 152 GYIRSWDAK-------LGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQ 204
I+ W K LG+ + V + + + T++SA + V+
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSV---------TIISAGNDKMVK 179
Query: 205 FWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE 253
W+ + H ++N L A+P + S G DG+++L+ + +
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 133 VLSVTWSADGNMLYSGSSDGYIRSW 157
+S+ WSADG L++G +D IR W
Sbjct: 289 AVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 20/169 (11%)
Query: 93 SVVEDRRVALACD-DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD 151
++ D AL+ D +R++ + + Y R + S V+SV +M+ SGS D
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGE--TYQRFVGHKS-DVMSVDIDKKASMIISGSRD 128
Query: 152 GYIRSWDAK-------LGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQ 204
I+ W K LG+ + V + + + T++SA + V+
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSV---------TIISAGNDKMVK 179
Query: 205 FWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE 253
W+ + H ++N L A+P + S G DG+++L+ + +
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 133 VLSVTWSADGNMLYSGSSDGYIRSW 157
+S+ WSADG L++G +D IR W
Sbjct: 289 AVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 133 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSL-LSLRC 191
+LS+ +S DG L SG+ DG I +D G ++ + G + I SL S
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL--------EGHAMPIRSLTFSPDS 218
Query: 192 GTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAP 231
LV+A G ++ +D +H L S H V +A P
Sbjct: 219 QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP 258
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 96/248 (38%), Gaps = 36/248 (14%)
Query: 10 SSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGN----GYL 65
SSS+D + WDL + KQ + + W +A +P + L H+G G
Sbjct: 97 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGT----HVGKVNIFGVE 152
Query: 66 NDKXXXXXXXXXXXXXXXXXXXXXXXQSVVEDRRVALACDDGCVRIYRITDSDELIYHRS 125
+ K + + +A DG + I+ I L +
Sbjct: 153 SGKKEYSLDTRGKFILSIAYSP--------DGKYLASGAIDGIINIFDIATGKLL---HT 201
Query: 126 LPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWS 185
L + + S+T+S D +L + S DGYI+ +D + L G SG W
Sbjct: 202 LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ--------HANLAGTLSGH--ASWV 251
Query: 186 LLSLRC---GTLVSADSTGSVQFWDSRHGTLLQAHSF--HKGDVNALAAAPSHNRVFSTG 240
L C VS+ S SV+ WD GT H+F H+ V + + +++ S G
Sbjct: 252 LNVAFCPDDTHFVSSSSDKSVKVWDV--GTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVG 309
Query: 241 SDGQVILY 248
D ++ +Y
Sbjct: 310 DDQEIHIY 317
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 203 VQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVF-STGSDGQVILYKASCESIGPNDGL 261
++ WD +L ++ H V +AA+P + VF S D +++L+ C G
Sbjct: 151 IKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC 210
Query: 262 SS 263
S+
Sbjct: 211 SA 212
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 68/178 (38%), Gaps = 27/178 (15%)
Query: 96 EDRRVALACDDGCVRIYRITDSDELIY----HRSLPRVSGRV-------------LSVTW 138
E R + CV + SD L++ H S P SG ++W
Sbjct: 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSW 189
Query: 139 SADGN-MLYSGSSDGYIRSWDAKLGYEIYRITVG---LGGLGSGPELCIWSLLSLRCGTL 194
+ + N L S S D I WD + +R+ G + E W LL
Sbjct: 190 NPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGS 249
Query: 195 VSADSTGSVQFWDSRHG-TLLQAHSF--HKGDVNALAAAPSHNRVFSTGS-DGQVILY 248
V+ D + WD+R+ T +H+ H +VN L+ P + +TGS D V L+
Sbjct: 250 VADDQ--KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 68/178 (38%), Gaps = 27/178 (15%)
Query: 96 EDRRVALACDDGCVRIYRITDSDELIY----HRSLPRVSGRV-------------LSVTW 138
E R + CV + SD L++ H S P SG ++W
Sbjct: 132 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSW 191
Query: 139 SADGN-MLYSGSSDGYIRSWDAKLGYEIYRITVG---LGGLGSGPELCIWSLLSLRCGTL 194
+ + N L S S D I WD + +R+ G + E W LL
Sbjct: 192 NPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGS 251
Query: 195 VSADSTGSVQFWDSRHG-TLLQAHSF--HKGDVNALAAAPSHNRVFSTGS-DGQVILY 248
V+ D + WD+R+ T +H+ H +VN L+ P + +TGS D V L+
Sbjct: 252 VADDQ--KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 307
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 130 SGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITV 170
+G V SV+W+ G +L S DG +R W A E ++V
Sbjct: 306 NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSV 346
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 60/151 (39%), Gaps = 19/151 (12%)
Query: 111 IYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLY----SGSSDGYIRSWDAKLGYEIY 166
IY+ +L LP + S++W+ Y +G DG IR I+
Sbjct: 195 IYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR---------IF 245
Query: 167 RITVGLGGLGSGPELCIWSLLSLRCGTLVSA------DSTGSVQFWDSRHGTLLQAHSFH 220
+IT L L S L ++ + A ++ + + LL H H
Sbjct: 246 KITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH 305
Query: 221 KGDVNALAAAPSHNRVFSTGSDGQVILYKAS 251
G+V +++ + + S G DG+V L+KA+
Sbjct: 306 NGEVWSVSWNLTGTILSSAGDDGKVRLWKAT 336
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 130 SGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITV 170
+G V SV+W+ G +L S DG +R W A E ++V
Sbjct: 304 NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSV 344
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 60/151 (39%), Gaps = 19/151 (12%)
Query: 111 IYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLY----SGSSDGYIRSWDAKLGYEIY 166
IY+ +L LP + S++W+ Y +G DG IR I+
Sbjct: 193 IYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR---------IF 243
Query: 167 RITVGLGGLGSGPELCIWSLLSLRCGTLVSA------DSTGSVQFWDSRHGTLLQAHSFH 220
+IT L L S L ++ + A ++ + + LL H H
Sbjct: 244 KITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH 303
Query: 221 KGDVNALAAAPSHNRVFSTGSDGQVILYKAS 251
G+V +++ + + S G DG+V L+KA+
Sbjct: 304 NGEVWSVSWNLTGTILSSAGDDGKVRLWKAT 334
>pdb|4IL3|A Chain A, Crystal Structure Of S. Mikatae Ste24p
pdb|4IL3|B Chain B, Crystal Structure Of S. Mikatae Ste24p
Length = 461
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 21 DLYDLKQKIVLQSIDF--SIWQMAVAPSNSSL 50
D+Y+L QK+V DF IW MAV SN+ L
Sbjct: 77 DIYNLAQKLVFIKYDFFPKIWHMAVTLSNAVL 108
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 30/61 (49%)
Query: 193 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 252
T++SA + V+ W+ + H ++N L A+P + S G DG++ L+ +
Sbjct: 168 TIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAA 227
Query: 253 E 253
+
Sbjct: 228 K 228
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 133 VLSVTWSADGNMLYSGSSDGYIRSW 157
+S+ WSADG L++G +D IR W
Sbjct: 289 AVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 68/178 (38%), Gaps = 27/178 (15%)
Query: 96 EDRRVALACDDGCVRIYRITDSDELIY----HRSLPRVSGRV-------------LSVTW 138
E R + CV + SD L++ H S P SG ++W
Sbjct: 134 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSW 193
Query: 139 SADGN-MLYSGSSDGYIRSWDAKLGYEIYRITVG---LGGLGSGPELCIWSLLSLRCGTL 194
+ + N L S S D I WD + +R+ G + E W LL
Sbjct: 194 NPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGS 253
Query: 195 VSADSTGSVQFWDSRHG-TLLQAHSF--HKGDVNALAAAPSHNRVFSTGS-DGQVILY 248
V+ D + WD+R+ T +H+ H +VN L+ P + +TGS D V L+
Sbjct: 254 VADDQ--KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 309
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 62/159 (38%), Gaps = 29/159 (18%)
Query: 133 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG 192
+ SV W +GN L G+S ++ WD + + +T +GS LS
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS---------LSWNSY 200
Query: 193 TLVSADSTGSVQFWDSR----HGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248
L S +G + D R H L HS +V L AP + S G+D V ++
Sbjct: 201 ILSSGSRSGHIHHHDVRVAEHHVATLSGHS---QEVCGLRWAPDGRHLASGGNDNLVNVW 257
Query: 249 KASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALT 287
++ P +G W+ + + H V+A+
Sbjct: 258 PSA-----PGEG--------GWVPLQTFTQHQGAVKAVA 283
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 62/159 (38%), Gaps = 29/159 (18%)
Query: 133 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG 192
+ SV W +GN L G+S ++ WD + + +T +GS LS
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS---------LSWNSY 211
Query: 193 TLVSADSTGSVQFWDSR----HGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248
L S +G + D R H L HS +V L AP + S G+D V ++
Sbjct: 212 ILSSGSRSGHIHHHDVRVAEHHVATLSGHS---QEVCGLRWAPDGRHLASGGNDNLVNVW 268
Query: 249 KASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALT 287
++ P +G W+ + + H V+A+
Sbjct: 269 PSA-----PGEG--------GWVPLQTFTQHQGAVKAVA 294
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 40/117 (34%), Gaps = 22/117 (18%)
Query: 130 SGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIY----------------------R 167
S V + W+ DG L SG +D + W + G +
Sbjct: 241 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 300
Query: 168 ITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDV 224
+ GG S + IW++ S C + V A S W + L+ H F + +
Sbjct: 301 NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQL 357
>pdb|4DNZ|A Chain A, The Crystal Structures Of Cyp199a4
pdb|4DNZ|B Chain B, The Crystal Structures Of Cyp199a4
pdb|4DNZ|C Chain C, The Crystal Structures Of Cyp199a4
pdb|4DNZ|D Chain D, The Crystal Structures Of Cyp199a4
pdb|4DO1|A Chain A, The Crystal Structures Of 4-Methoxybenzoate Bound Cyp199a4
pdb|4DO1|B Chain B, The Crystal Structures Of 4-Methoxybenzoate Bound Cyp199a4
pdb|4DO1|C Chain C, The Crystal Structures Of 4-Methoxybenzoate Bound Cyp199a4
pdb|4DO1|D Chain D, The Crystal Structures Of 4-Methoxybenzoate Bound Cyp199a4
pdb|4EGM|A Chain A, The X-ray Crystal Structure Of Cyp199a4 In Complex With
4-ethylbenzoic Acid
pdb|4EGM|B Chain B, The X-ray Crystal Structure Of Cyp199a4 In Complex With
4-ethylbenzoic Acid
pdb|4EGM|C Chain C, The X-ray Crystal Structure Of Cyp199a4 In Complex With
4-ethylbenzoic Acid
pdb|4EGM|D Chain D, The X-ray Crystal Structure Of Cyp199a4 In Complex With
4-ethylbenzoic Acid
pdb|4EGN|A Chain A, The X-ray Crystal Structure Of Cyp199a4 In Complex With
Veratric Acid
pdb|4EGN|B Chain B, The X-ray Crystal Structure Of Cyp199a4 In Complex With
Veratric Acid
pdb|4EGN|C Chain C, The X-ray Crystal Structure Of Cyp199a4 In Complex With
Veratric Acid
pdb|4EGN|D Chain D, The X-ray Crystal Structure Of Cyp199a4 In Complex With
Veratric Acid
pdb|4EGO|A Chain A, The X-ray Crystal Structure Of Cyp199a4 In Complex With
Indole-6- Carboxylic Acid
pdb|4EGO|B Chain B, The X-ray Crystal Structure Of Cyp199a4 In Complex With
Indole-6- Carboxylic Acid
pdb|4EGO|C Chain C, The X-ray Crystal Structure Of Cyp199a4 In Complex With
Indole-6- Carboxylic Acid
pdb|4EGO|D Chain D, The X-ray Crystal Structure Of Cyp199a4 In Complex With
Indole-6- Carboxylic Acid
pdb|4EGP|A Chain A, The X-ray Crystal Structure Of Cyp199a4 In Complex With
2-naphthoic Acid
pdb|4EGP|B Chain B, The X-ray Crystal Structure Of Cyp199a4 In Complex With
2-naphthoic Acid
Length = 410
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 144 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLS 188
+++ GS++ R W Y+I R T G G GSG +C+ L++
Sbjct: 321 LMFLGSANRDPRRWSDPDLYDITRKTSGHVGFGSGVHMCVGQLVA 365
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 130 SGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 165
+G V SV+W+ G +L S DG +R W A E
Sbjct: 306 NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEF 341
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 59/153 (38%), Gaps = 23/153 (15%)
Query: 111 IYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLY----SGSSDGYIRSWDAKLGYEIY 166
IY+ +L LP + S++W+ Y +G DG IR I+
Sbjct: 195 IYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR---------IF 245
Query: 167 RITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTG--------SVQFWDSRHGTLLQAHS 218
+IT L L S L + V D+ G + + LL H
Sbjct: 246 KITEKLSPLASEESLT--NSNXFDNSADVDXDAQGRSDSNTEEKAELQSNLQVELLSEHD 303
Query: 219 FHKGDVNALAAAPSHNRVFSTGSDGQVILYKAS 251
H G+V +++ + + S G DG+V L+KA+
Sbjct: 304 DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKAT 336
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 16/123 (13%)
Query: 133 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG 192
+ SV W +GN L G+S ++ WD + + +T +GS LS
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS---------LSWNSY 120
Query: 193 TLVSADSTGSVQFWDSR----HGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248
L S +G + D R H L HS +V L AP + S G+D V ++
Sbjct: 121 ILSSGSRSGHIHHHDVRVAEHHVATLSGHS---QEVCGLRWAPDGRHLASGGNDNLVNVW 177
Query: 249 KAS 251
++
Sbjct: 178 PSA 180
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 96 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIR 155
+D+++ D ++I+ D + L R L +G VL + + D ++ +GSSD +R
Sbjct: 142 DDQKIVSGLRDNTIKIW---DKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVR 196
Query: 156 SWDAKLG 162
WD G
Sbjct: 197 VWDVNTG 203
>pdb|4EM6|D Chain D, The Structure Of Glucose-6-Phosphate Isomerase (Gpi) From
Brucella Melitensis
pdb|4EM6|A Chain A, The Structure Of Glucose-6-Phosphate Isomerase (Gpi) From
Brucella Melitensis
pdb|4EM6|B Chain B, The Structure Of Glucose-6-Phosphate Isomerase (Gpi) From
Brucella Melitensis
pdb|4EM6|C Chain C, The Structure Of Glucose-6-Phosphate Isomerase (Gpi) From
Brucella Melitensis
Length = 553
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 12/140 (8%)
Query: 261 LSSSEVIKKWI--YVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYH 318
+++++ +KW+ +G H A++ A+ +PED+V G + Y
Sbjct: 219 MTNAQTARKWVADTLGEAAVGAH-FAAVSTALDKVAAFGIPEDRV---FGFWDWVGGRYS 274
Query: 319 KWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLV-----HNTIFSHT 373
W+ +G+P++I+ G D + A P + +P+ L H I +
Sbjct: 275 VWSAIGLPVMIAVGPD-NFRKFLAGAHAMDVHFRDAPLEKNLPVMLGLIGYWHRAICGYG 333
Query: 374 SLLLVQYSCRLDILSVRLEN 393
S ++ Y RL L L+
Sbjct: 334 SRAIIPYDQRLSRLPAYLQQ 353
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 12/75 (16%)
Query: 107 GCVRIYRITDSDELIYHRSLPRVSGR-----------VLSVTWSADGNMLYSGSSDGYIR 155
GC+ +Y T+ E I S+P S + V+S++++ G L S DG +R
Sbjct: 268 GCITLYE-TEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR 326
Query: 156 SWDAKLGYEIYRITV 170
WD K I + +
Sbjct: 327 FWDVKTKERITTLNM 341
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 12/75 (16%)
Query: 107 GCVRIYRITDSDELIYHRSLPRVSGR-----------VLSVTWSADGNMLYSGSSDGYIR 155
GC+ +Y T+ E I S+P S + V+S++++ G L S DG +R
Sbjct: 258 GCITLYE-TEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR 316
Query: 156 SWDAKLGYEIYRITV 170
WD K I + +
Sbjct: 317 FWDVKTKERITTLNM 331
>pdb|3VA6|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt4673 From B.
Thetaiotaomicron
pdb|3VA6|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt4673 From B.
Thetaiotaomicron
Length = 758
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 28/132 (21%)
Query: 474 IFSYD---SSQLIIAGHDR--RIY---VVD-------VSSSELLHTFTPCREEHDREIQP 518
+FSYD + Q G + RIY ++D + L++ + R E P
Sbjct: 43 LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTYLYMGTDNGILVYNYRADRYEQPETDFP 102
Query: 519 SEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNV 578
++ + M D WL A+N +Y + L+ ++ F +R G P N
Sbjct: 103 TD--VRTMALQGDTLWLGALNG---LYTYQLQSRKLTSFDTRRNGL--------PNNTIY 149
Query: 579 LIITTSSNQVYV 590
II T NQ+YV
Sbjct: 150 SIIRTKDNQIYV 161
>pdb|3OTT|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative One Component System Bt4673 From B.
Thetaiotaomicron
pdb|3OTT|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Putative One Component System Bt4673 From B.
Thetaiotaomicron
Length = 758
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 28/132 (21%)
Query: 474 IFSYD---SSQLIIAGHDR--RIY---VVD-------VSSSELLHTFTPCREEHDREIQP 518
+FSYD + Q G + RIY ++D + L++ + R E P
Sbjct: 43 LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTYLYMGTDNGILVYNYRADRYEQPETDFP 102
Query: 519 SEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNV 578
++ + M D WL A+N +Y + L+ ++ F +R G P N
Sbjct: 103 TD--VRTMALQGDTLWLGALNG---LYTYQLQSRKLTSFDTRRNGL--------PNNTIY 149
Query: 579 LIITTSSNQVYV 590
II T NQ+YV
Sbjct: 150 SIIRTKDNQIYV 161
>pdb|4AAH|A Chain A, Methanol Dehydrogenase From Methylophilus W3a1
pdb|4AAH|C Chain C, Methanol Dehydrogenase From Methylophilus W3a1
pdb|2AD6|A Chain A, Crystal Structure Of Methanol Dehydrogenase From M. W3a1
(Form C)
pdb|2AD6|C Chain C, Crystal Structure Of Methanol Dehydrogenase From M. W3a1
(Form C)
pdb|2AD7|A Chain A, Crystal Structure Of Methanol Dehydrogenase From M. W3a1
(Form C) In The Presence Of Methanol
pdb|2AD7|C Chain C, Crystal Structure Of Methanol Dehydrogenase From M. W3a1
(Form C) In The Presence Of Methanol
pdb|2AD8|A Chain A, Crystal Structure Of Methanol Dehydrogenase From M. W3a1
(Form C) In The Presence Of Ethanol
pdb|2AD8|C Chain C, Crystal Structure Of Methanol Dehydrogenase From M. W3a1
(Form C) In The Presence Of Ethanol
Length = 571
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 142 GNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS 177
G +++ + DGY+++ D K G E++ + GG+GS
Sbjct: 475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGS 510
>pdb|1G72|A Chain A, Catalytic Mechanism Of Quinoprotein Methanol
Dehydrogenase: A Theoretical And X-Ray Crystallographic
Investigation
pdb|1G72|C Chain C, Catalytic Mechanism Of Quinoprotein Methanol
Dehydrogenase: A Theoretical And X-Ray Crystallographic
Investigation
Length = 573
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 142 GNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS 177
G +++ + DGY+++ D K G E++ + GG+GS
Sbjct: 477 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGS 512
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,122,909
Number of Sequences: 62578
Number of extensions: 836031
Number of successful extensions: 2263
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1847
Number of HSP's gapped (non-prelim): 368
length of query: 744
length of database: 14,973,337
effective HSP length: 106
effective length of query: 638
effective length of database: 8,340,069
effective search space: 5320964022
effective search space used: 5320964022
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)