Query 004581
Match_columns 744
No_of_seqs 851 out of 3526
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 01:44:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004581.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004581hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2048 WD40 repeat protein [G 100.0 2.4E-70 5.3E-75 529.5 58.4 606 4-744 79-691 (691)
2 KOG0271 Notchless-like WD40 re 100.0 3.1E-55 6.8E-60 395.3 28.6 367 26-592 106-479 (480)
3 KOG0318 WD40 repeat stress pro 100.0 4.8E-52 1E-56 390.3 49.0 481 1-594 67-602 (603)
4 KOG0319 WD40-repeat-containing 100.0 2.2E-52 4.8E-57 408.6 37.2 508 2-651 71-619 (775)
5 KOG0271 Notchless-like WD40 re 100.0 2.5E-51 5.4E-56 370.1 27.7 316 1-548 123-479 (480)
6 KOG0319 WD40-repeat-containing 100.0 9.7E-49 2.1E-53 383.2 36.5 454 2-596 114-621 (775)
7 KOG0306 WD40-repeat-containing 100.0 1.6E-46 3.4E-51 367.8 43.3 525 6-647 34-660 (888)
8 KOG0318 WD40 repeat stress pro 100.0 8.4E-45 1.8E-49 341.6 50.6 462 14-628 38-584 (603)
9 KOG0291 WD40-repeat-containing 100.0 1.9E-44 4.1E-49 353.4 53.5 496 1-597 63-615 (893)
10 KOG0306 WD40-repeat-containing 100.0 9.7E-46 2.1E-50 362.3 42.8 442 6-596 78-666 (888)
11 KOG0291 WD40-repeat-containing 100.0 1.8E-42 3.9E-47 339.6 56.7 555 11-733 31-620 (893)
12 KOG0286 G-protein beta subunit 100.0 1.6E-41 3.5E-46 296.2 32.2 291 26-548 46-343 (343)
13 KOG0272 U4/U6 small nuclear ri 100.0 3.1E-43 6.6E-48 322.4 22.3 274 1-445 183-458 (459)
14 KOG0272 U4/U6 small nuclear ri 100.0 1.3E-42 2.9E-47 318.3 22.5 267 98-548 188-458 (459)
15 KOG1539 WD repeat protein [Gen 100.0 4.3E-38 9.3E-43 312.7 42.3 492 5-644 124-652 (910)
16 KOG0279 G protein beta subunit 100.0 7.1E-39 1.5E-43 278.1 31.5 298 25-497 5-313 (315)
17 KOG0315 G-protein beta subunit 100.0 8.8E-39 1.9E-43 272.5 31.0 295 143-572 11-309 (311)
18 KOG0279 G protein beta subunit 100.0 2E-38 4.3E-43 275.3 32.9 293 119-594 4-313 (315)
19 KOG0286 G-protein beta subunit 100.0 6.6E-38 1.4E-42 273.7 33.6 290 122-592 47-343 (343)
20 KOG0276 Vesicle coat complex C 100.0 2.3E-37 5E-42 297.3 39.8 436 1-594 21-490 (794)
21 KOG0315 G-protein beta subunit 100.0 2E-38 4.4E-43 270.3 28.2 295 7-528 12-308 (311)
22 KOG0273 Beta-transducin family 100.0 2.5E-38 5.4E-43 294.2 30.4 323 1-550 186-523 (524)
23 KOG0273 Beta-transducin family 100.0 4.9E-38 1.1E-42 292.3 31.5 331 127-594 175-523 (524)
24 KOG0296 Angio-associated migra 100.0 5.2E-37 1.1E-41 276.5 35.2 341 27-594 56-398 (399)
25 KOG1539 WD repeat protein [Gen 100.0 5.9E-37 1.3E-41 304.6 38.3 462 7-593 174-647 (910)
26 KOG1408 WD40 repeat protein [F 100.0 5.1E-37 1.1E-41 299.1 33.7 460 2-595 87-714 (1080)
27 KOG0295 WD40 repeat-containing 100.0 2.1E-37 4.6E-42 278.7 23.7 305 26-549 99-405 (406)
28 KOG1408 WD40 repeat protein [F 100.0 1.1E-34 2.4E-39 282.9 42.0 506 13-647 56-712 (1080)
29 KOG1063 RNA polymerase II elon 100.0 7.1E-35 1.5E-39 284.0 39.9 498 8-627 27-674 (764)
30 KOG0645 WD40 repeat protein [G 100.0 4.2E-35 9.1E-40 253.5 32.2 297 26-497 5-311 (312)
31 KOG0645 WD40 repeat protein [G 100.0 6.1E-35 1.3E-39 252.5 31.2 294 121-594 5-311 (312)
32 KOG0265 U5 snRNP-specific prot 100.0 1.4E-35 3E-40 260.3 27.1 293 29-548 41-336 (338)
33 KOG1063 RNA polymerase II elon 100.0 2.4E-34 5.1E-39 280.3 37.5 508 8-628 162-734 (764)
34 KOG0292 Vesicle coat complex C 100.0 1E-33 2.3E-38 282.8 42.3 454 1-596 17-520 (1202)
35 KOG0295 WD40 repeat-containing 100.0 1.1E-35 2.3E-40 267.9 24.3 326 99-593 78-405 (406)
36 KOG0293 WD40 repeat-containing 100.0 8.7E-36 1.9E-40 272.4 23.5 295 28-595 217-514 (519)
37 KOG0284 Polyadenylation factor 100.0 9.5E-37 2.1E-41 278.5 16.3 275 1-448 104-381 (464)
38 KOG0282 mRNA splicing factor [ 100.0 2.2E-36 4.8E-41 282.6 18.9 291 26-548 205-503 (503)
39 KOG0292 Vesicle coat complex C 100.0 1.2E-32 2.5E-37 275.3 45.2 438 98-649 22-480 (1202)
40 KOG2106 Uncharacterized conser 100.0 1.6E-32 3.4E-37 257.6 42.3 456 16-593 135-625 (626)
41 KOG0285 Pleiotropic regulator 100.0 1.2E-34 2.6E-39 260.1 26.4 278 3-448 161-440 (460)
42 KOG0296 Angio-associated migra 100.0 5.6E-34 1.2E-38 257.0 30.6 316 2-550 73-398 (399)
43 KOG0285 Pleiotropic regulator 100.0 7.3E-35 1.6E-39 261.5 24.6 292 121-596 142-441 (460)
44 KOG0276 Vesicle coat complex C 100.0 4.6E-33 1E-37 267.9 38.5 448 28-649 6-491 (794)
45 KOG0284 Polyadenylation factor 100.0 8.6E-36 1.9E-40 272.3 17.6 284 128-594 94-380 (464)
46 KOG0263 Transcription initiati 100.0 1.1E-34 2.4E-39 288.3 27.0 306 130-628 378-696 (707)
47 KOG2048 WD40 repeat protein [G 100.0 1.6E-31 3.4E-36 260.5 48.1 490 5-647 37-547 (691)
48 KOG0263 Transcription initiati 100.0 1.9E-34 4.1E-39 286.6 27.2 281 27-552 370-651 (707)
49 KOG2106 Uncharacterized conser 100.0 2.2E-31 4.7E-36 250.0 42.3 423 15-591 85-518 (626)
50 KOG0316 Conserved WD40 repeat- 100.0 2.9E-33 6.4E-38 236.8 26.2 284 124-592 11-297 (307)
51 KOG0265 U5 snRNP-specific prot 100.0 4E-33 8.6E-38 245.0 26.6 290 122-591 39-335 (338)
52 KOG0281 Beta-TrCP (transducin 100.0 3.8E-34 8.2E-39 255.8 17.4 262 98-554 208-481 (499)
53 KOG0281 Beta-TrCP (transducin 100.0 1E-34 2.2E-39 259.5 12.8 273 4-393 206-480 (499)
54 cd00200 WD40 WD40 domain, foun 100.0 2.4E-31 5.2E-36 264.4 36.5 286 124-592 3-289 (289)
55 cd00200 WD40 WD40 domain, foun 100.0 2.1E-31 4.5E-36 264.9 35.9 286 29-548 3-289 (289)
56 KOG0266 WD40 repeat-containing 100.0 6.2E-32 1.3E-36 279.1 32.7 273 98-550 172-454 (456)
57 KOG0282 mRNA splicing factor [ 100.0 1.9E-33 4.1E-38 263.0 18.5 290 123-592 207-503 (503)
58 KOG0266 WD40 repeat-containing 100.0 1.3E-31 2.8E-36 276.7 32.1 293 124-594 152-454 (456)
59 PLN00181 protein SPA1-RELATED; 100.0 4.6E-31 1E-35 294.7 38.8 320 14-549 457-792 (793)
60 PLN00181 protein SPA1-RELATED; 100.0 8.2E-31 1.8E-35 292.7 39.2 305 106-593 457-792 (793)
61 KOG0278 Serine/threonine kinas 100.0 1.5E-32 3.2E-37 234.6 17.8 289 124-554 8-301 (334)
62 KOG0643 Translation initiation 100.0 9.4E-31 2E-35 226.0 26.9 293 30-497 5-317 (327)
63 KOG1446 Histone H3 (Lys4) meth 100.0 4.2E-29 9.1E-34 222.3 34.9 296 124-599 8-308 (311)
64 KOG0316 Conserved WD40 repeat- 100.0 2.8E-30 6.1E-35 218.8 25.7 284 26-548 8-297 (307)
65 KOG1407 WD40 repeat protein [F 100.0 4.5E-30 9.8E-35 221.2 26.7 277 124-585 14-293 (313)
66 KOG0308 Conserved WD40 repeat- 100.0 1.2E-30 2.6E-35 252.8 21.7 356 2-506 33-402 (735)
67 KOG0275 Conserved WD40 repeat- 100.0 2.2E-31 4.7E-36 236.0 15.3 293 128-548 211-507 (508)
68 KOG0293 WD40 repeat-containing 100.0 2.5E-30 5.4E-35 236.9 22.3 192 1-254 232-428 (519)
69 KOG0973 Histone transcription 100.0 3.7E-29 8.1E-34 258.1 29.7 308 178-600 11-361 (942)
70 KOG0275 Conserved WD40 repeat- 100.0 1.2E-30 2.6E-35 231.3 15.1 273 98-495 226-507 (508)
71 KOG0313 Microtubule binding pr 100.0 5.8E-29 1.3E-33 225.8 25.5 297 128-550 103-418 (423)
72 KOG0278 Serine/threonine kinas 100.0 5.5E-30 1.2E-34 219.0 16.5 291 29-501 8-301 (334)
73 KOG0313 Microtubule binding pr 100.0 1.6E-28 3.5E-33 222.9 26.9 245 5-344 115-377 (423)
74 KOG0274 Cdc4 and related F-box 100.0 2.8E-28 6E-33 249.7 31.7 285 98-571 219-503 (537)
75 KOG0643 Translation initiation 100.0 1.2E-28 2.5E-33 213.2 23.9 294 125-552 5-319 (327)
76 KOG1407 WD40 repeat protein [F 100.0 4.2E-28 9E-33 209.1 25.9 278 29-541 14-293 (313)
77 KOG0310 Conserved WD40 repeat- 100.0 1.8E-28 3.9E-33 230.3 24.6 283 129-551 25-310 (487)
78 KOG0288 WD40 repeat protein Ti 100.0 1.3E-29 2.8E-34 232.5 16.3 285 124-547 169-458 (459)
79 KOG0274 Cdc4 and related F-box 100.0 2.8E-28 6.1E-33 249.6 27.9 226 4-346 217-444 (537)
80 KOG0300 WD40 repeat-containing 100.0 2.8E-28 6.2E-33 215.7 23.0 315 7-498 126-477 (481)
81 KOG0973 Histone transcription 100.0 4.7E-28 1E-32 250.0 27.4 280 98-552 26-357 (942)
82 KOG0283 WD40 repeat-containing 100.0 3.4E-28 7.5E-33 244.6 24.9 298 26-553 257-579 (712)
83 KOG0299 U3 snoRNP-associated p 100.0 1E-27 2.2E-32 223.5 26.0 289 28-538 135-443 (479)
84 KOG1445 Tumor-specific antigen 100.0 6.9E-27 1.5E-31 225.7 31.0 169 419-600 628-804 (1012)
85 KOG0277 Peroxisomal targeting 100.0 1.1E-27 2.3E-32 205.7 21.4 226 12-344 35-266 (311)
86 PTZ00421 coronin; Provisional 100.0 1.1E-26 2.4E-31 238.2 33.1 194 3-254 30-248 (493)
87 KOG0772 Uncharacterized conser 100.0 3E-27 6.4E-32 223.0 25.5 304 124-550 161-487 (641)
88 KOG0640 mRNA cleavage stimulat 100.0 1.4E-27 3.1E-32 210.7 21.8 299 29-592 106-424 (430)
89 KOG0305 Anaphase promoting com 100.0 6E-27 1.3E-31 229.8 28.4 184 6-253 189-378 (484)
90 PTZ00420 coronin; Provisional 100.0 1.1E-26 2.3E-31 238.8 31.1 184 11-252 50-249 (568)
91 KOG0283 WD40 repeat-containing 100.0 1.9E-27 4.2E-32 239.2 24.7 305 122-596 258-578 (712)
92 KOG2096 WD40 repeat protein [G 100.0 8.4E-27 1.8E-31 206.7 24.2 309 30-447 81-402 (420)
93 KOG0647 mRNA export protein (c 100.0 1.7E-26 3.7E-31 203.6 25.9 278 128-539 25-312 (347)
94 KOG0289 mRNA splicing factor [ 100.0 2E-26 4.3E-31 212.9 27.1 271 98-496 232-505 (506)
95 KOG0299 U3 snoRNP-associated p 100.0 1.2E-26 2.6E-31 216.3 25.2 301 124-591 136-453 (479)
96 KOG1036 Mitotic spindle checkp 100.0 3.9E-26 8.5E-31 202.3 26.9 277 129-540 12-294 (323)
97 KOG0772 Uncharacterized conser 100.0 1E-26 2.2E-31 219.4 24.6 305 26-496 158-486 (641)
98 KOG0294 WD40 repeat-containing 100.0 1E-25 2.2E-30 199.9 29.5 268 99-553 3-284 (362)
99 KOG1446 Histone H3 (Lys4) meth 100.0 3.6E-25 7.9E-30 197.4 33.1 296 25-550 4-303 (311)
100 KOG0310 Conserved WD40 repeat- 100.0 1.2E-26 2.7E-31 218.0 24.9 219 14-344 47-269 (487)
101 KOG0268 Sof1-like rRNA process 100.0 8.7E-28 1.9E-32 216.8 16.3 289 28-554 59-349 (433)
102 KOG0301 Phospholipase A2-activ 100.0 1E-26 2.3E-31 227.5 25.1 283 25-550 4-288 (745)
103 KOG0301 Phospholipase A2-activ 100.0 1.8E-26 3.9E-31 225.8 24.7 263 4-448 24-289 (745)
104 PTZ00421 coronin; Provisional 100.0 1.7E-25 3.8E-30 229.4 33.2 122 125-254 70-201 (493)
105 KOG2096 WD40 repeat protein [G 100.0 4E-26 8.7E-31 202.4 24.3 296 124-592 80-400 (420)
106 KOG0288 WD40 repeat protein Ti 100.0 7.4E-28 1.6E-32 221.0 13.7 291 26-494 166-458 (459)
107 KOG0268 Sof1-like rRNA process 100.0 2.9E-27 6.4E-32 213.4 16.5 286 124-596 60-347 (433)
108 KOG1332 Vesicle coat complex C 99.9 6.6E-27 1.4E-31 199.7 17.1 241 98-448 24-287 (299)
109 KOG0277 Peroxisomal targeting 99.9 6.7E-27 1.5E-31 200.9 17.0 229 6-342 74-308 (311)
110 KOG0308 Conserved WD40 repeat- 99.9 7.5E-27 1.6E-31 226.7 19.2 196 91-344 31-244 (735)
111 KOG0289 mRNA splicing factor [ 99.9 1.1E-25 2.3E-30 208.2 25.8 190 6-254 232-422 (506)
112 KOG0641 WD40 repeat protein [G 99.9 3.7E-24 8.1E-29 180.5 30.7 298 129-594 31-349 (350)
113 PTZ00420 coronin; Provisional 99.9 1.2E-24 2.6E-29 223.8 33.3 157 103-288 50-217 (568)
114 KOG0640 mRNA cleavage stimulat 99.9 1.3E-25 2.8E-30 198.4 22.4 297 214-629 105-408 (430)
115 KOG0647 mRNA export protein (c 99.9 4.7E-25 1E-29 194.5 25.4 281 178-583 25-312 (347)
116 KOG0639 Transducin-like enhanc 99.9 3.4E-26 7.4E-31 215.0 18.8 268 98-549 432-703 (705)
117 KOG0305 Anaphase promoting com 99.9 9.2E-26 2E-30 221.5 22.4 232 1-345 225-463 (484)
118 KOG0300 WD40 repeat-containing 99.9 1.6E-25 3.5E-30 198.3 21.2 282 7-344 162-477 (481)
119 KOG0641 WD40 repeat protein [G 99.9 6.2E-24 1.4E-28 179.2 29.1 236 1-344 40-304 (350)
120 KOG0294 WD40 repeat-containing 99.9 1.8E-25 3.9E-30 198.4 20.5 235 2-347 50-285 (362)
121 KOG1445 Tumor-specific antigen 99.9 3.2E-24 7E-29 207.4 30.6 160 426-597 587-753 (1012)
122 KOG4283 Transcription-coupled 99.9 2.6E-24 5.7E-29 188.9 25.9 290 97-549 56-364 (397)
123 KOG1538 Uncharacterized conser 99.9 9.8E-24 2.1E-28 205.3 30.1 470 2-588 21-518 (1081)
124 KOG1036 Mitotic spindle checkp 99.9 5.5E-24 1.2E-28 188.8 25.6 278 178-584 11-294 (323)
125 KOG0650 WD40 repeat nucleolar 99.9 4E-24 8.6E-29 205.7 26.3 317 124-591 394-732 (733)
126 KOG2055 WD40 repeat protein [G 99.9 5.3E-24 1.2E-28 198.7 25.4 282 98-550 226-512 (514)
127 KOG1332 Vesicle coat complex C 99.9 8.6E-25 1.9E-29 186.9 18.2 237 3-344 21-287 (299)
128 KOG1963 WD40 repeat protein [G 99.9 1.3E-22 2.8E-27 205.3 37.0 463 4-598 26-587 (792)
129 KOG0646 WD40 repeat protein [G 99.9 1.8E-24 3.9E-29 202.4 21.6 307 100-532 10-331 (476)
130 KOG0264 Nucleosome remodeling 99.9 4.7E-24 1E-28 199.4 22.0 246 7-344 139-405 (422)
131 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.8E-22 3.9E-27 201.7 35.0 184 6-254 2-190 (300)
132 KOG0646 WD40 repeat protein [G 99.9 1.5E-23 3.3E-28 196.2 24.9 283 11-348 13-312 (476)
133 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.9E-22 1.1E-26 198.7 37.3 292 142-573 1-300 (300)
134 KOG0264 Nucleosome remodeling 99.9 1.6E-23 3.4E-28 195.9 21.8 253 98-448 138-405 (422)
135 KOG1273 WD40 repeat protein [G 99.9 1E-22 2.2E-27 180.8 24.6 273 98-448 36-323 (405)
136 KOG1274 WD40 repeat protein [G 99.9 1.8E-22 3.8E-27 204.7 28.9 286 128-591 11-297 (933)
137 KOG2055 WD40 repeat protein [G 99.9 8.3E-23 1.8E-27 190.8 24.3 286 178-594 211-512 (514)
138 KOG1538 Uncharacterized conser 99.9 3.4E-21 7.3E-26 187.9 36.0 260 107-497 33-293 (1081)
139 KOG0639 Transducin-like enhanc 99.9 1.4E-23 3.1E-28 197.5 18.7 268 3-446 429-703 (705)
140 KOG1274 WD40 repeat protein [G 99.9 4.6E-22 1E-26 201.6 29.9 273 218-631 10-284 (933)
141 KOG1009 Chromatin assembly com 99.9 4.9E-22 1.1E-26 182.8 26.7 331 98-554 27-376 (434)
142 KOG0267 Microtubule severing p 99.9 1.4E-24 3E-29 213.6 9.9 251 8-382 7-258 (825)
143 KOG4283 Transcription-coupled 99.9 1.5E-21 3.2E-26 171.7 26.7 313 126-594 39-365 (397)
144 KOG0267 Microtubule severing p 99.9 2.3E-24 4.9E-29 212.1 10.0 206 6-289 41-247 (825)
145 KOG1273 WD40 repeat protein [G 99.9 2.2E-21 4.7E-26 172.4 26.0 291 133-551 26-323 (405)
146 KOG2445 Nuclear pore complex c 99.9 4.9E-21 1.1E-25 169.8 26.3 277 177-550 10-318 (361)
147 KOG1034 Transcriptional repres 99.9 2.6E-21 5.6E-26 173.1 24.7 148 98-254 56-214 (385)
148 KOG1963 WD40 repeat protein [G 99.9 2E-19 4.3E-24 182.5 40.4 426 100-649 30-539 (792)
149 KOG0302 Ribosome Assembly prot 99.9 7.9E-22 1.7E-26 179.5 20.8 193 7-254 167-381 (440)
150 KOG0269 WD40 repeat-containing 99.9 1.1E-22 2.3E-27 202.1 15.6 232 5-344 100-341 (839)
151 KOG2445 Nuclear pore complex c 99.9 8.4E-21 1.8E-25 168.3 25.8 257 98-448 26-319 (361)
152 KOG0321 WD40 repeat-containing 99.9 4.5E-21 9.7E-26 186.5 24.6 288 95-499 62-393 (720)
153 KOG4328 WD40 protein [Function 99.9 6.8E-21 1.5E-25 178.0 22.8 318 20-550 171-495 (498)
154 KOG1009 Chromatin assembly com 99.9 2.6E-20 5.7E-25 171.6 25.9 323 179-598 12-376 (434)
155 KOG0321 WD40 repeat-containing 99.9 6.6E-21 1.4E-25 185.3 22.0 321 184-596 53-393 (720)
156 KOG0270 WD40 repeat-containing 99.9 6.8E-21 1.5E-25 177.5 20.7 190 4-254 191-407 (463)
157 COG2319 FOG: WD40 repeat [Gene 99.9 1E-17 2.2E-22 177.9 48.5 371 30-595 60-443 (466)
158 KOG4378 Nuclear protein COP1 [ 99.9 1.3E-20 2.8E-25 177.6 22.0 290 144-573 5-303 (673)
159 KOG0269 WD40 repeat-containing 99.9 4.6E-21 9.9E-26 190.7 19.6 292 131-596 40-342 (839)
160 KOG4328 WD40 protein [Function 99.9 3.3E-20 7.1E-25 173.5 24.0 299 124-595 180-496 (498)
161 KOG0650 WD40 repeat nucleolar 99.9 3.1E-20 6.7E-25 179.2 23.1 317 177-645 397-729 (733)
162 KOG4497 Uncharacterized conser 99.9 1.2E-20 2.6E-25 168.7 18.0 375 135-646 13-429 (447)
163 KOG1034 Transcriptional repres 99.9 3.1E-20 6.8E-25 166.2 19.8 333 124-594 32-383 (385)
164 KOG2919 Guanine nucleotide-bin 99.9 1.7E-19 3.7E-24 161.1 23.8 284 1-383 57-361 (406)
165 COG2319 FOG: WD40 repeat [Gene 99.9 2.5E-17 5.3E-22 175.0 45.2 357 3-551 75-443 (466)
166 KOG4378 Nuclear protein COP1 [ 99.9 8.2E-20 1.8E-24 172.2 22.0 273 8-346 5-283 (673)
167 KOG2919 Guanine nucleotide-bin 99.8 8.5E-19 1.8E-23 156.7 24.0 292 224-628 52-351 (406)
168 KOG0302 Ribosome Assembly prot 99.8 4.3E-19 9.3E-24 161.9 20.9 197 98-346 166-381 (440)
169 KOG0270 WD40 repeat-containing 99.8 2.7E-19 5.9E-24 166.9 19.8 236 96-393 191-452 (463)
170 KOG4497 Uncharacterized conser 99.8 4.2E-19 9.1E-24 158.9 19.8 399 1-586 16-424 (447)
171 KOG1524 WD40 repeat-containing 99.8 1.2E-17 2.6E-22 159.3 29.4 401 98-598 76-527 (737)
172 KOG0322 G-protein beta subunit 99.8 2.1E-19 4.5E-24 156.0 15.7 311 124-549 8-322 (323)
173 KOG1310 WD40 repeat protein [G 99.8 3.4E-18 7.4E-23 163.5 24.1 124 124-254 44-181 (758)
174 KOG0307 Vesicle coat complex C 99.8 1.4E-19 3.1E-24 188.7 14.9 234 6-346 81-330 (1049)
175 KOG1188 WD40 repeat protein [G 99.8 6E-18 1.3E-22 152.7 19.9 286 6-389 41-345 (376)
176 KOG0322 G-protein beta subunit 99.8 3.4E-18 7.3E-23 148.6 17.0 298 178-593 12-322 (323)
177 KOG1007 WD repeat protein TSSC 99.8 7.2E-18 1.6E-22 148.4 18.8 238 16-344 94-362 (370)
178 KOG1188 WD40 repeat protein [G 99.8 1.3E-17 2.8E-22 150.6 20.4 288 143-596 41-348 (376)
179 KOG0642 Cell-cycle nuclear pro 99.8 2.9E-18 6.3E-23 165.1 16.6 202 2-254 303-564 (577)
180 KOG1523 Actin-related protein 99.8 1.8E-17 4E-22 148.3 20.4 214 419-650 11-238 (361)
181 KOG0649 WD40 repeat protein [G 99.8 3.8E-16 8.2E-21 134.2 27.2 190 1-254 18-238 (325)
182 PRK11028 6-phosphogluconolacto 99.8 1.1E-15 2.3E-20 153.7 35.0 145 99-252 4-157 (330)
183 KOG0642 Cell-cycle nuclear pro 99.8 4.2E-18 9.2E-23 164.0 16.3 266 178-557 292-568 (577)
184 KOG1007 WD repeat protein TSSC 99.8 4.1E-17 8.8E-22 143.7 20.9 232 13-345 38-291 (370)
185 KOG1334 WD40 repeat protein [G 99.8 3.2E-18 6.8E-23 161.6 14.8 316 123-553 135-469 (559)
186 KOG0307 Vesicle coat complex C 99.8 2.8E-18 6E-23 179.2 14.8 194 99-346 82-287 (1049)
187 KOG0303 Actin-binding protein 99.8 2.8E-17 6.1E-22 151.0 18.2 166 30-254 76-252 (472)
188 KOG0644 Uncharacterized conser 99.8 3.6E-18 7.7E-23 171.4 12.7 279 178-596 188-470 (1113)
189 KOG0974 WD-repeat protein WDR6 99.8 5.8E-15 1.3E-19 153.2 36.4 191 2-254 96-291 (967)
190 KOG0644 Uncharacterized conser 99.8 1.9E-18 4.2E-23 173.2 10.3 285 123-554 183-472 (1113)
191 KOG0303 Actin-binding protein 99.8 8.3E-17 1.8E-21 148.0 19.2 188 5-254 94-297 (472)
192 KOG1517 Guanine nucleotide bin 99.8 2.9E-16 6.3E-21 162.0 25.2 303 132-598 1066-1385(1387)
193 KOG4227 WD40 repeat protein [G 99.7 1.8E-16 3.8E-21 145.5 20.4 310 123-496 49-386 (609)
194 COG2706 3-carboxymuconate cycl 99.7 1.4E-15 3E-20 139.9 26.0 289 381-727 15-323 (346)
195 KOG1524 WD40 repeat-containing 99.7 1.1E-15 2.4E-20 146.2 25.4 174 6-246 76-250 (737)
196 PRK11028 6-phosphogluconolacto 99.7 1.5E-14 3.3E-19 145.4 35.2 187 8-252 5-206 (330)
197 KOG0771 Prolactin regulatory e 99.7 1.6E-15 3.5E-20 141.6 23.2 202 225-551 148-355 (398)
198 KOG0290 Conserved WD40 repeat- 99.7 2.3E-15 4.9E-20 133.0 22.7 278 5-387 59-362 (364)
199 PF02239 Cytochrom_D1: Cytochr 99.7 6.6E-15 1.4E-19 146.6 28.0 326 193-598 8-351 (369)
200 KOG1587 Cytoplasmic dynein int 99.7 2.5E-15 5.3E-20 153.3 25.0 275 15-448 222-517 (555)
201 KOG1517 Guanine nucleotide bin 99.7 4E-15 8.8E-20 153.7 26.2 293 98-500 1077-1384(1387)
202 KOG0649 WD40 repeat protein [G 99.7 2.8E-15 6E-20 129.0 20.7 264 222-596 11-276 (325)
203 KOG4227 WD40 repeat protein [G 99.7 3.6E-15 7.9E-20 137.0 22.2 313 31-447 52-387 (609)
204 KOG2041 WD40 repeat protein [G 99.7 4.8E-14 1E-18 139.7 31.4 486 98-651 27-622 (1189)
205 KOG2110 Uncharacterized conser 99.7 3E-14 6.6E-19 130.6 26.2 186 7-254 58-251 (391)
206 KOG0771 Prolactin regulatory e 99.7 5.1E-16 1.1E-20 144.9 14.9 193 93-344 152-355 (398)
207 KOG2139 WD40 repeat protein [G 99.7 1.6E-14 3.5E-19 131.7 23.6 182 8-251 113-309 (445)
208 KOG1587 Cytoplasmic dynein int 99.7 2.8E-14 6.1E-19 145.7 28.1 282 152-551 222-517 (555)
209 KOG2315 Predicted translation 99.7 1.9E-13 4E-18 132.5 31.4 333 99-573 47-410 (566)
210 KOG1240 Protein kinase contain 99.7 1.6E-14 3.5E-19 151.8 25.8 185 20-254 1034-1228(1431)
211 KOG1310 WD40 repeat protein [G 99.7 5.1E-15 1.1E-19 142.1 19.0 166 27-252 42-232 (758)
212 KOG2110 Uncharacterized conser 99.7 1.1E-12 2.5E-17 120.4 32.1 296 98-466 18-348 (391)
213 PF02239 Cytochrom_D1: Cytochr 99.7 6E-13 1.3E-17 132.7 33.0 331 99-559 8-356 (369)
214 KOG1334 WD40 repeat protein [G 99.7 2.8E-15 6.1E-20 142.0 15.4 306 177-597 139-469 (559)
215 PRK01742 tolB translocation pr 99.6 2.1E-14 4.6E-19 148.6 21.5 173 14-254 183-364 (429)
216 KOG1523 Actin-related protein 99.6 1.4E-13 3E-18 123.8 22.7 246 216-586 5-270 (361)
217 COG4946 Uncharacterized protei 99.6 9.6E-12 2.1E-16 117.9 35.4 166 429-630 331-501 (668)
218 KOG2139 WD40 repeat protein [G 99.6 4.8E-13 1E-17 122.3 25.1 306 131-596 99-433 (445)
219 KOG2315 Predicted translation 99.6 3.3E-12 7.1E-17 124.0 32.1 352 107-598 11-394 (566)
220 KOG0290 Conserved WD40 repeat- 99.6 7.2E-14 1.6E-18 123.7 18.8 233 381-649 72-319 (364)
221 KOG2111 Uncharacterized conser 99.6 3.4E-12 7.4E-17 115.0 29.4 161 419-598 95-260 (346)
222 PF10282 Lactonase: Lactonase, 99.6 2E-12 4.4E-17 129.6 31.7 289 382-726 13-323 (345)
223 PRK01742 tolB translocation pr 99.6 1.1E-13 2.5E-18 143.2 22.4 170 422-628 251-426 (429)
224 KOG1912 WD40 repeat protein [G 99.6 8.6E-13 1.9E-17 132.4 27.2 450 5-597 26-554 (1062)
225 PF08662 eIF2A: Eukaryotic tra 99.6 2.1E-13 4.4E-18 123.1 19.9 153 422-598 9-183 (194)
226 PRK03629 tolB translocation pr 99.6 8.2E-12 1.8E-16 129.0 34.1 131 469-627 288-427 (429)
227 PF10282 Lactonase: Lactonase, 99.6 3.1E-11 6.8E-16 121.1 37.2 307 194-571 2-345 (345)
228 KOG1272 WD40-repeat-containing 99.6 8.4E-15 1.8E-19 137.9 9.7 257 98-438 142-399 (545)
229 KOG1354 Serine/threonine prote 99.6 7.3E-13 1.6E-17 120.2 21.6 310 221-597 25-362 (433)
230 KOG2111 Uncharacterized conser 99.6 1.1E-11 2.3E-16 111.9 28.2 177 15-254 75-259 (346)
231 COG5354 Uncharacterized protei 99.6 1.2E-11 2.5E-16 118.7 30.1 328 124-598 26-399 (561)
232 KOG2394 WD40 protein DMR-N9 [G 99.6 7.6E-14 1.7E-18 134.0 14.8 168 7-231 187-384 (636)
233 KOG2041 WD40 repeat protein [G 99.5 9.9E-12 2.1E-16 123.7 28.2 468 4-596 25-621 (1189)
234 KOG1272 WD40-repeat-containing 99.5 2E-14 4.4E-19 135.4 8.8 186 4-254 140-326 (545)
235 KOG2394 WD40 protein DMR-N9 [G 99.5 2.2E-13 4.7E-18 130.9 15.8 184 427-627 182-384 (636)
236 KOG1240 Protein kinase contain 99.5 2.8E-12 6.1E-17 135.4 24.9 277 206-598 1034-1338(1431)
237 PRK03629 tolB translocation pr 99.5 4.4E-12 9.5E-17 131.0 25.8 174 16-254 180-366 (429)
238 KOG0974 WD-repeat protein WDR6 99.5 6.2E-11 1.3E-15 123.8 33.8 144 5-210 145-289 (967)
239 PF04762 IKI3: IKI3 family; I 99.5 4.7E-09 1E-13 116.7 49.0 396 129-648 208-639 (928)
240 KOG2321 WD40 repeat protein [G 99.5 1.6E-11 3.5E-16 119.3 25.3 197 429-646 145-341 (703)
241 PRK04922 tolB translocation pr 99.5 6.7E-12 1.4E-16 130.4 23.9 175 15-254 184-371 (433)
242 KOG1354 Serine/threonine prote 99.5 4.2E-12 9.1E-17 115.4 18.6 288 179-500 24-362 (433)
243 KOG3881 Uncharacterized conser 99.5 1.4E-11 3.1E-16 114.2 22.4 261 327-628 71-342 (412)
244 PRK05137 tolB translocation pr 99.5 1.6E-11 3.6E-16 127.8 26.0 174 15-253 182-368 (435)
245 KOG4547 WD40 repeat-containing 99.5 9.7E-12 2.1E-16 121.8 22.4 211 1-252 1-221 (541)
246 PF08662 eIF2A: Eukaryotic tra 99.5 5.3E-12 1.2E-16 113.9 19.4 133 107-254 37-182 (194)
247 COG4946 Uncharacterized protei 99.5 1.4E-09 3.1E-14 103.5 35.7 148 413-583 354-507 (668)
248 KOG1409 Uncharacterized conser 99.5 2.3E-12 5E-17 117.2 16.3 233 5-346 36-273 (404)
249 PRK02889 tolB translocation pr 99.5 1E-11 2.2E-16 128.5 22.8 175 15-254 176-363 (427)
250 TIGR02658 TTQ_MADH_Hv methylam 99.5 2.6E-09 5.6E-14 103.8 37.5 268 152-559 27-339 (352)
251 PRK02889 tolB translocation pr 99.4 3.7E-11 8.1E-16 124.3 26.2 174 420-628 241-425 (427)
252 PRK05137 tolB translocation pr 99.4 6.1E-11 1.3E-15 123.5 27.4 172 420-627 247-432 (435)
253 PRK04922 tolB translocation pr 99.4 1.7E-11 3.6E-16 127.5 22.4 188 1-253 211-413 (433)
254 KOG3881 Uncharacterized conser 99.4 1.2E-11 2.6E-16 114.6 18.2 194 3-254 113-323 (412)
255 KOG1912 WD40 repeat protein [G 99.4 3.1E-10 6.7E-15 114.5 29.4 421 99-629 28-533 (1062)
256 KOG2321 WD40 repeat protein [G 99.4 1E-10 2.2E-15 113.9 24.3 170 419-603 176-353 (703)
257 KOG2314 Translation initiation 99.4 8.6E-10 1.9E-14 107.1 30.4 352 98-581 223-599 (698)
258 TIGR03300 assembly_YfgL outer 99.4 7.4E-10 1.6E-14 113.7 32.4 310 142-591 65-376 (377)
259 PF04762 IKI3: IKI3 family; I 99.4 9.9E-08 2.2E-12 106.3 50.7 418 85-597 75-567 (928)
260 COG2706 3-carboxymuconate cycl 99.4 3.2E-09 6.8E-14 98.6 32.3 304 200-572 15-345 (346)
261 KOG2314 Translation initiation 99.4 7.5E-10 1.6E-14 107.5 28.0 315 182-598 212-577 (698)
262 COG5354 Uncharacterized protei 99.4 7.3E-10 1.6E-14 106.6 27.4 367 18-586 15-421 (561)
263 PRK01029 tolB translocation pr 99.3 3.7E-10 8E-15 116.1 24.4 219 364-628 186-425 (428)
264 TIGR02800 propeller_TolB tol-p 99.3 2.9E-10 6.2E-15 119.0 24.0 174 15-253 170-356 (417)
265 KOG4190 Uncharacterized conser 99.3 6E-12 1.3E-16 121.5 10.2 154 95-254 745-909 (1034)
266 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.1E-08 2.3E-13 99.6 32.5 236 333-598 75-334 (352)
267 KOG1409 Uncharacterized conser 99.3 3.6E-10 7.8E-15 103.2 20.6 120 120-246 14-139 (404)
268 TIGR03300 assembly_YfgL outer 99.3 3.2E-09 6.9E-14 109.0 29.5 306 96-547 64-376 (377)
269 KOG4547 WD40 repeat-containing 99.3 3.5E-10 7.5E-15 111.2 20.3 168 97-289 5-193 (541)
270 TIGR02800 propeller_TolB tol-p 99.3 3.6E-10 7.7E-15 118.2 22.0 177 1-243 197-386 (417)
271 PRK00178 tolB translocation pr 99.3 1.5E-09 3.3E-14 113.5 25.9 174 16-254 180-366 (430)
272 PRK01029 tolB translocation pr 99.3 8.8E-10 1.9E-14 113.4 23.5 181 15-254 165-362 (428)
273 COG5170 CDC55 Serine/threonine 99.2 4.7E-10 1E-14 100.8 16.6 180 415-596 169-369 (460)
274 PRK04792 tolB translocation pr 99.2 5.4E-09 1.2E-13 108.6 27.1 171 422-627 265-446 (448)
275 PRK04792 tolB translocation pr 99.2 1E-09 2.3E-14 113.9 21.8 186 1-252 225-426 (448)
276 PRK00178 tolB translocation pr 99.2 2.2E-09 4.8E-14 112.2 22.5 186 1-252 206-407 (430)
277 KOG0280 Uncharacterized conser 99.2 1.2E-08 2.5E-13 91.5 23.2 231 105-391 44-285 (339)
278 PRK11138 outer membrane biogen 99.1 1.5E-07 3.3E-12 96.9 32.3 320 142-593 69-393 (394)
279 KOG1064 RAVE (regulator of V-A 99.1 1.1E-09 2.3E-14 120.6 16.0 145 98-254 2221-2369(2439)
280 KOG1064 RAVE (regulator of V-A 99.1 4.4E-10 9.5E-15 123.5 11.5 179 3-254 2218-2401(2439)
281 KOG3914 WD repeat protein WDR4 99.1 1.7E-09 3.6E-14 101.4 13.1 160 421-599 65-228 (390)
282 KOG0280 Uncharacterized conser 99.1 3.3E-09 7.1E-14 95.0 13.8 193 1-252 129-334 (339)
283 PRK11138 outer membrane biogen 99.0 5.6E-07 1.2E-11 92.8 31.4 160 5-217 69-231 (394)
284 KOG4532 WD40-like repeat conta 99.0 2.7E-08 5.9E-13 87.9 18.1 193 7-253 130-333 (344)
285 PLN02919 haloacid dehalogenase 99.0 6.8E-07 1.5E-11 102.0 32.8 129 469-598 741-892 (1057)
286 PRK04043 tolB translocation pr 99.0 6E-08 1.3E-12 99.1 21.8 188 1-253 195-402 (419)
287 KOG3914 WD repeat protein WDR4 98.9 9.5E-09 2.1E-13 96.4 12.4 105 104-219 129-233 (390)
288 KOG4532 WD40-like repeat conta 98.9 3.6E-07 7.9E-12 81.0 21.3 238 327-597 86-334 (344)
289 PF07433 DUF1513: Protein of u 98.9 9E-07 1.9E-11 82.9 23.9 102 132-239 6-116 (305)
290 KOG4714 Nucleoporin [Nuclear s 98.9 1.9E-08 4.2E-13 88.5 11.7 147 97-253 101-256 (319)
291 KOG3617 WD40 and TPR repeat-co 98.9 1.5E-06 3.2E-11 89.5 25.4 187 1-252 23-221 (1416)
292 PLN02919 haloacid dehalogenase 98.9 2.4E-06 5.1E-11 97.6 30.3 120 134-254 686-836 (1057)
293 PF15492 Nbas_N: Neuroblastoma 98.8 7.1E-06 1.5E-10 74.4 26.2 70 185-254 2-76 (282)
294 KOG0882 Cyclophilin-related pe 98.8 2.8E-07 6.2E-12 87.7 18.1 305 178-591 7-369 (558)
295 KOG4649 PQQ (pyrrolo-quinoline 98.8 5.6E-05 1.2E-09 67.3 30.6 104 142-254 23-126 (354)
296 PF13360 PQQ_2: PQQ-like domai 98.8 1.5E-06 3.2E-11 83.1 22.7 194 4-254 35-233 (238)
297 PF13360 PQQ_2: PQQ-like domai 98.8 1.1E-05 2.4E-10 77.1 28.5 148 98-254 37-194 (238)
298 PF08450 SGL: SMP-30/Gluconola 98.8 2.9E-05 6.3E-10 74.3 31.2 107 419-539 134-244 (246)
299 PRK04043 tolB translocation pr 98.8 3.3E-06 7.3E-11 86.4 25.8 133 106-254 212-360 (419)
300 PF08450 SGL: SMP-30/Gluconola 98.8 8.9E-06 1.9E-10 77.8 26.3 223 320-584 7-245 (246)
301 KOG0309 Conserved WD40 repeat- 98.8 2.5E-07 5.3E-12 93.6 15.4 191 98-347 37-236 (1081)
302 COG5170 CDC55 Serine/threonine 98.7 1.2E-07 2.6E-12 85.7 11.6 285 178-496 24-366 (460)
303 PF15492 Nbas_N: Neuroblastoma 98.7 2.6E-05 5.7E-10 70.9 26.3 214 100-348 11-264 (282)
304 KOG4190 Uncharacterized conser 98.7 5.2E-08 1.1E-12 94.8 10.0 228 7-250 749-987 (1034)
305 KOG0309 Conserved WD40 repeat- 98.7 1.2E-07 2.5E-12 95.8 12.6 248 8-344 84-340 (1081)
306 KOG1920 IkappaB kinase complex 98.7 0.00012 2.7E-09 79.4 33.6 183 419-649 196-393 (1265)
307 KOG0882 Cyclophilin-related pe 98.7 1.1E-06 2.4E-11 83.8 16.5 274 98-448 21-306 (558)
308 PF00400 WD40: WD domain, G-be 98.7 8.7E-08 1.9E-12 60.9 6.1 36 123-158 4-39 (39)
309 KOG4714 Nucleoporin [Nuclear s 98.6 2.3E-07 4.9E-12 81.9 10.3 94 107-210 159-255 (319)
310 KOG2695 WD40 repeat protein [G 98.6 1.4E-07 2.9E-12 86.8 9.1 150 92-255 219-380 (425)
311 PF06433 Me-amine-dh_H: Methyl 98.6 6.8E-05 1.5E-09 71.4 27.0 164 429-598 147-324 (342)
312 KOG2695 WD40 repeat protein [G 98.6 1.2E-07 2.6E-12 87.1 8.4 161 9-230 228-401 (425)
313 PF00400 WD40: WD domain, G-be 98.6 1.9E-07 4.1E-12 59.4 6.0 39 211-249 1-39 (39)
314 KOG4649 PQQ (pyrrolo-quinoline 98.6 0.00041 8.9E-09 62.0 27.6 142 98-252 24-166 (354)
315 cd00216 PQQ_DH Dehydrogenases 98.6 0.00014 3E-09 76.9 30.2 153 97-254 61-267 (488)
316 KOG1645 RING-finger-containing 98.5 1.2E-05 2.6E-10 76.0 19.0 269 203-551 175-462 (463)
317 KOG1275 PAB-dependent poly(A) 98.5 1.6E-06 3.4E-11 90.3 14.0 180 5-250 147-341 (1118)
318 KOG2114 Vacuolar assembly/sort 98.5 2.2E-05 4.8E-10 81.7 21.1 195 1-254 31-246 (933)
319 KOG1897 Damage-specific DNA bi 98.5 0.0039 8.5E-08 66.8 41.6 400 98-596 500-944 (1096)
320 KOG2114 Vacuolar assembly/sort 98.4 6.3E-05 1.4E-09 78.5 22.9 129 418-563 125-256 (933)
321 PF11768 DUF3312: Protein of u 98.4 0.0013 2.8E-08 66.6 30.9 71 469-552 261-331 (545)
322 KOG2066 Vacuolar assembly/sort 98.4 5.7E-05 1.2E-09 78.1 21.8 135 96-254 48-190 (846)
323 KOG3621 WD40 repeat-containing 98.4 5E-05 1.1E-09 77.5 20.7 117 129-252 32-155 (726)
324 KOG3617 WD40 and TPR repeat-co 98.4 2.2E-05 4.8E-10 81.2 17.4 108 135-252 20-132 (1416)
325 PF07433 DUF1513: Protein of u 98.3 7.1E-05 1.5E-09 70.4 19.2 207 1-247 58-281 (305)
326 PF06433 Me-amine-dh_H: Methyl 98.3 0.0032 7E-08 60.3 30.2 81 469-561 239-331 (342)
327 KOG1832 HIV-1 Vpr-binding prot 98.3 5.8E-07 1.3E-11 92.9 4.4 137 98-254 1114-1258(1516)
328 KOG3621 WD40 repeat-containing 98.3 0.00014 3E-09 74.3 20.6 138 3-198 43-188 (726)
329 KOG1920 IkappaB kinase complex 98.3 0.00026 5.7E-09 77.0 23.5 144 469-637 197-353 (1265)
330 KOG1832 HIV-1 Vpr-binding prot 98.3 1.4E-06 3.1E-11 90.1 6.5 119 124-254 1095-1217(1516)
331 KOG2066 Vacuolar assembly/sort 98.2 5.1E-05 1.1E-09 78.5 16.7 185 419-646 40-233 (846)
332 PRK02888 nitrous-oxide reducta 98.2 0.00059 1.3E-08 70.8 24.0 158 409-595 227-405 (635)
333 cd00216 PQQ_DH Dehydrogenases 98.2 0.0067 1.5E-07 64.3 31.8 154 98-254 111-322 (488)
334 KOG1897 Damage-specific DNA bi 98.2 0.019 4.2E-07 61.8 45.8 469 3-597 315-859 (1096)
335 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.0065 1.4E-07 64.5 31.2 115 97-218 69-198 (527)
336 PF11768 DUF3312: Protein of u 98.1 2.5E-05 5.4E-10 78.5 11.3 74 128-211 257-331 (545)
337 PF06977 SdiA-regulated: SdiA- 98.1 0.00064 1.4E-08 63.3 19.9 207 419-645 22-247 (248)
338 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.001 2.2E-08 67.3 22.3 104 139-251 1-131 (353)
339 COG0823 TolB Periplasmic compo 98.0 0.00019 4.1E-09 73.1 16.5 155 419-597 193-361 (425)
340 KOG1645 RING-finger-containing 98.0 0.00017 3.7E-09 68.4 14.3 79 124-211 187-268 (463)
341 PF08596 Lgl_C: Lethal giant l 98.0 0.0074 1.6E-07 61.0 26.7 214 126-390 82-335 (395)
342 PF04053 Coatomer_WDAD: Coatom 98.0 0.0011 2.4E-08 67.9 20.6 131 98-253 45-175 (443)
343 PF04053 Coatomer_WDAD: Coatom 98.0 0.00074 1.6E-08 69.1 19.3 183 419-641 33-215 (443)
344 PF00930 DPPIV_N: Dipeptidyl p 97.9 0.019 4E-07 58.2 28.4 151 417-584 182-347 (353)
345 KOG1275 PAB-dependent poly(A) 97.9 0.00046 9.9E-09 72.7 16.4 192 96-348 146-347 (1118)
346 PF08596 Lgl_C: Lethal giant l 97.9 0.011 2.5E-07 59.7 25.2 102 481-596 228-337 (395)
347 PF06977 SdiA-regulated: SdiA- 97.8 0.013 2.8E-07 54.8 23.0 209 363-591 22-247 (248)
348 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0026 5.7E-08 49.7 14.9 100 133-246 2-109 (111)
349 PF04841 Vps16_N: Vps16, N-ter 97.8 0.023 4.9E-07 58.4 26.5 105 474-596 185-289 (410)
350 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.081 1.8E-06 56.4 34.0 62 191-254 69-141 (527)
351 PF03178 CPSF_A: CPSF A subuni 97.8 0.014 3E-07 58.4 24.5 169 409-596 14-204 (321)
352 PF14583 Pectate_lyase22: Olig 97.7 0.029 6.4E-07 55.1 24.6 158 418-594 187-381 (386)
353 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0033 7.2E-08 49.1 14.6 101 470-589 2-109 (111)
354 PF04841 Vps16_N: Vps16, N-ter 97.7 0.029 6.2E-07 57.7 26.1 147 99-253 93-248 (410)
355 PF03178 CPSF_A: CPSF A subuni 97.7 0.065 1.4E-06 53.6 30.5 144 98-253 43-204 (321)
356 PRK02888 nitrous-oxide reducta 97.7 0.012 2.6E-07 61.4 22.8 103 138-252 284-405 (635)
357 COG0823 TolB Periplasmic compo 97.7 0.0011 2.3E-08 67.7 15.1 177 1-241 200-389 (425)
358 PF00780 CNH: CNH domain; Int 97.7 0.052 1.1E-06 52.9 26.5 154 429-598 104-259 (275)
359 PF05096 Glu_cyclase_2: Glutam 97.7 0.023 4.9E-07 52.8 21.7 210 410-645 36-256 (264)
360 COG3386 Gluconolactonase [Carb 97.7 0.046 1E-06 53.2 25.0 147 469-641 112-277 (307)
361 KOG4640 Anaphase-promoting com 97.6 0.00026 5.6E-09 71.5 9.2 93 469-573 22-115 (665)
362 KOG4640 Anaphase-promoting com 97.6 0.00032 6.9E-09 70.9 9.8 95 520-627 20-115 (665)
363 KOG1008 Uncharacterized conser 97.6 1.3E-05 2.9E-10 80.3 0.2 143 98-250 71-224 (783)
364 TIGR03074 PQQ_membr_DH membran 97.6 0.18 4E-06 55.8 35.2 121 97-218 194-353 (764)
365 COG3391 Uncharacterized conser 97.6 0.013 2.9E-07 59.7 21.0 195 419-647 74-282 (381)
366 COG3204 Uncharacterized protei 97.5 0.023 5.1E-07 52.6 19.7 212 418-645 85-309 (316)
367 COG3391 Uncharacterized conser 97.5 0.024 5.2E-07 57.9 22.0 215 469-738 75-296 (381)
368 COG3490 Uncharacterized protei 97.4 0.057 1.2E-06 49.7 20.2 104 161-289 57-170 (366)
369 PF14583 Pectate_lyase22: Olig 97.3 0.19 4.1E-06 49.6 26.5 89 134-230 39-131 (386)
370 PF14655 RAB3GAP2_N: Rab3 GTPa 97.3 0.17 3.6E-06 51.3 24.5 93 135-231 6-118 (415)
371 PRK13616 lipoprotein LpqB; Pro 97.3 0.012 2.6E-07 63.0 17.7 130 105-246 428-563 (591)
372 PF08553 VID27: VID27 cytoplas 97.3 0.011 2.4E-07 64.1 17.3 139 104-251 501-647 (794)
373 PF02897 Peptidase_S9_N: Proly 97.3 0.32 6.9E-06 50.8 29.0 165 421-601 229-411 (414)
374 smart00320 WD40 WD40 repeats. 97.3 0.00058 1.3E-08 42.7 4.7 35 124-158 6-40 (40)
375 KOG1008 Uncharacterized conser 97.3 8.6E-05 1.9E-09 74.8 0.9 187 7-253 72-277 (783)
376 smart00320 WD40 WD40 repeats. 97.2 0.00098 2.1E-08 41.6 5.5 39 211-249 2-40 (40)
377 PRK13616 lipoprotein LpqB; Pro 97.2 0.024 5.3E-07 60.7 17.9 118 132-251 398-525 (591)
378 PF10647 Gmad1: Lipoprotein Lp 97.1 0.19 4E-06 47.9 21.7 193 419-644 24-233 (253)
379 PF00780 CNH: CNH domain; Int 97.0 0.36 7.8E-06 47.0 25.7 149 3-217 5-173 (275)
380 KOG2079 Vacuolar assembly/sort 97.0 0.018 3.9E-07 62.6 15.0 105 97-209 99-203 (1206)
381 COG3204 Uncharacterized protei 96.8 0.13 2.8E-06 47.9 16.5 173 461-647 79-262 (316)
382 KOG4499 Ca2+-binding protein R 96.8 0.24 5.3E-06 44.3 17.4 97 422-530 161-263 (310)
383 PF07995 GSDH: Glucose / Sorbo 96.8 0.48 1E-05 47.3 22.4 110 132-244 3-136 (331)
384 KOG2079 Vacuolar assembly/sort 96.8 0.011 2.3E-07 64.3 10.8 99 6-159 100-202 (1206)
385 COG3386 Gluconolactonase [Carb 96.7 0.7 1.5E-05 45.1 23.9 155 109-289 87-263 (307)
386 KOG2395 Protein involved in va 96.7 0.033 7.1E-07 55.8 12.5 147 98-252 347-501 (644)
387 KOG2395 Protein involved in va 96.6 0.024 5.1E-07 56.7 11.4 147 8-159 349-499 (644)
388 KOG2444 WD40 repeat protein [G 96.6 0.0043 9.4E-08 54.9 5.7 70 98-169 71-141 (238)
389 COG3490 Uncharacterized protei 96.6 0.26 5.6E-06 45.6 16.8 144 469-630 69-238 (366)
390 KOG2444 WD40 repeat protein [G 96.6 0.0022 4.7E-08 56.8 3.7 143 99-252 32-178 (238)
391 PF08553 VID27: VID27 cytoplas 96.6 0.053 1.2E-06 59.1 14.8 144 11-208 500-646 (794)
392 KOG4441 Proteins containing BT 96.5 0.38 8.3E-06 51.8 20.8 145 97-253 333-501 (571)
393 PF02897 Peptidase_S9_N: Proly 96.5 1.4 3E-05 46.0 27.1 98 104-211 147-262 (414)
394 PF12894 Apc4_WD40: Anaphase-p 96.4 0.0092 2E-07 38.8 5.0 32 519-550 10-41 (47)
395 PF10647 Gmad1: Lipoprotein Lp 96.4 0.61 1.3E-05 44.4 19.5 95 99-194 79-179 (253)
396 PF12894 Apc4_WD40: Anaphase-p 96.4 0.011 2.3E-07 38.5 5.1 35 130-165 11-45 (47)
397 PHA02713 hypothetical protein; 96.3 0.14 3E-06 55.3 16.1 71 90-163 297-378 (557)
398 TIGR03074 PQQ_membr_DH membran 96.3 2.5 5.4E-05 47.1 38.7 220 5-254 194-480 (764)
399 PF05096 Glu_cyclase_2: Glutam 96.3 0.97 2.1E-05 42.3 21.3 113 131-253 45-159 (264)
400 PF05694 SBP56: 56kDa selenium 96.3 1.5 3.2E-05 44.0 22.2 148 98-250 88-276 (461)
401 PF07995 GSDH: Glucose / Sorbo 96.2 1.5 3.3E-05 43.8 27.0 57 183-240 4-70 (331)
402 PF13449 Phytase-like: Esteras 96.2 1.6 3.5E-05 43.5 24.3 175 419-595 20-250 (326)
403 PF14655 RAB3GAP2_N: Rab3 GTPa 95.9 2.4 5.3E-05 43.1 27.2 92 469-560 309-408 (415)
404 PF10168 Nup88: Nuclear pore c 95.8 3.9 8.5E-05 45.2 29.2 82 418-499 84-181 (717)
405 PF15390 DUF4613: Domain of un 95.8 0.31 6.6E-06 50.1 14.6 130 463-599 52-191 (671)
406 TIGR02604 Piru_Ver_Nterm putat 95.8 0.51 1.1E-05 48.1 16.7 141 469-639 15-202 (367)
407 COG5290 IkappaB kinase complex 95.8 0.64 1.4E-05 49.4 16.8 117 519-649 245-367 (1243)
408 KOG4441 Proteins containing BT 95.7 1.5 3.2E-05 47.4 20.3 106 477-598 426-550 (571)
409 PF15390 DUF4613: Domain of un 95.7 3.2 7E-05 43.1 28.8 122 128-253 54-188 (671)
410 COG5276 Uncharacterized conser 95.7 1.9 4.1E-05 40.4 27.7 157 179-393 85-244 (370)
411 COG3823 Glutamine cyclotransfe 95.6 0.55 1.2E-05 41.3 13.2 188 429-642 55-251 (262)
412 PF14870 PSII_BNR: Photosynthe 95.4 2.8 6E-05 40.8 31.4 157 415-591 141-301 (302)
413 PF05694 SBP56: 56kDa selenium 95.4 2.7 5.9E-05 42.2 19.0 214 429-655 86-349 (461)
414 TIGR02604 Piru_Ver_Nterm putat 95.4 0.79 1.7E-05 46.7 16.3 153 419-585 14-204 (367)
415 PF12234 Rav1p_C: RAVE protein 95.2 0.6 1.3E-05 49.8 15.0 124 520-650 29-158 (631)
416 PF10395 Utp8: Utp8 family; I 95.2 5.5 0.00012 42.8 21.5 164 469-647 131-304 (670)
417 KOG2377 Uncharacterized conser 95.1 0.52 1.1E-05 46.6 13.1 159 423-598 27-189 (657)
418 COG3292 Predicted periplasmic 95.1 4.8 0.0001 41.6 20.5 114 521-647 376-490 (671)
419 PHA03098 kelch-like protein; P 95.1 0.97 2.1E-05 49.0 17.1 146 95-253 341-513 (534)
420 PRK13684 Ycf48-like protein; P 95.0 4.2 9.2E-05 40.7 19.9 115 129-250 213-330 (334)
421 PHA02713 hypothetical protein; 94.8 0.92 2E-05 49.1 15.7 152 91-254 346-536 (557)
422 PF10214 Rrn6: RNA polymerase 94.6 7.8 0.00017 44.0 22.8 118 520-649 145-277 (765)
423 PF10313 DUF2415: Uncharacteri 94.5 0.15 3.2E-06 32.1 5.1 33 564-596 1-35 (43)
424 PF12234 Rav1p_C: RAVE protein 94.5 2.3 5.1E-05 45.5 17.1 112 469-593 31-155 (631)
425 PRK13684 Ycf48-like protein; P 94.5 4.4 9.5E-05 40.6 18.5 107 130-246 172-283 (334)
426 PHA03098 kelch-like protein; P 94.4 1.5 3.2E-05 47.6 16.5 113 92-214 290-419 (534)
427 PF14761 HPS3_N: Hermansky-Pud 94.4 1.3 2.7E-05 39.9 12.6 104 480-597 29-166 (215)
428 KOG2280 Vacuolar assembly/sort 94.2 3 6.4E-05 44.6 16.5 148 99-254 96-249 (829)
429 KOG2280 Vacuolar assembly/sort 94.1 6 0.00013 42.4 18.4 40 468-507 217-256 (829)
430 PF14781 BBS2_N: Ciliary BBSom 94.0 1.7 3.6E-05 35.6 11.5 109 474-597 5-128 (136)
431 PF10313 DUF2415: Uncharacteri 94.0 0.28 6.1E-06 30.8 5.5 32 131-162 1-35 (43)
432 COG1520 FOG: WD40-like repeat 94.0 7.9 0.00017 39.6 19.8 183 5-252 111-306 (370)
433 KOG4499 Ca2+-binding protein R 93.9 4.7 0.0001 36.5 15.4 95 133-231 160-263 (310)
434 KOG3630 Nuclear pore complex, 93.8 0.73 1.6E-05 51.2 11.8 154 413-582 95-261 (1405)
435 COG4590 ABC-type uncharacteriz 93.8 0.69 1.5E-05 45.8 10.6 160 419-597 221-389 (733)
436 PF08728 CRT10: CRT10; InterP 93.6 3.1 6.7E-05 45.1 15.8 165 430-594 49-246 (717)
437 COG4257 Vgb Streptogramin lyas 93.5 6.4 0.00014 36.7 22.8 238 366-649 65-306 (353)
438 COG1520 FOG: WD40-like repeat 93.5 10 0.00022 38.8 22.4 148 99-254 113-271 (370)
439 PRK10115 protease 2; Provision 93.4 2.2 4.8E-05 47.4 15.5 111 469-594 128-255 (686)
440 KOG2247 WD40 repeat-containing 93.4 0.0087 1.9E-07 59.1 -2.8 144 3-209 44-188 (615)
441 PF10214 Rrn6: RNA polymerase 93.2 19 0.00041 41.0 25.9 173 419-595 80-277 (765)
442 PF13449 Phytase-like: Esteras 93.2 6 0.00013 39.5 16.7 105 133-238 87-231 (326)
443 KOG3630 Nuclear pore complex, 93.0 1.4 3E-05 49.2 12.4 126 103-238 120-260 (1405)
444 KOG2377 Uncharacterized conser 92.9 1.8 4E-05 43.0 11.9 145 91-240 27-172 (657)
445 PHA02790 Kelch-like protein; P 92.6 6.3 0.00014 41.9 17.0 142 95-252 270-424 (480)
446 PF10168 Nup88: Nuclear pore c 92.3 5.6 0.00012 44.1 16.2 79 131-210 85-180 (717)
447 PRK10115 protease 2; Provision 92.2 23 0.0005 39.6 21.6 48 1-50 134-186 (686)
448 COG5276 Uncharacterized conser 92.0 11 0.00024 35.6 21.0 199 363-596 87-287 (370)
449 PHA02790 Kelch-like protein; P 91.9 11 0.00023 40.2 17.6 144 95-254 317-473 (480)
450 KOG1916 Nuclear protein, conta 91.9 0.21 4.5E-06 53.7 4.6 119 467-593 132-264 (1283)
451 KOG1916 Nuclear protein, conta 91.7 0.23 4.9E-06 53.4 4.6 121 86-214 184-328 (1283)
452 PF08728 CRT10: CRT10; InterP 91.3 1.4 3E-05 47.7 9.9 62 98-159 178-245 (717)
453 PLN00033 photosystem II stabil 91.1 20 0.00043 36.7 21.2 109 130-248 280-396 (398)
454 PF07569 Hira: TUP1-like enhan 91.1 1.9 4.1E-05 39.9 9.6 79 473-552 16-97 (219)
455 PF11715 Nup160: Nucleoporin N 91.0 1.8 3.9E-05 47.1 11.1 74 96-170 157-258 (547)
456 COG3823 Glutamine cyclotransfe 90.6 12 0.00026 33.4 14.6 132 99-240 103-247 (262)
457 PF07569 Hira: TUP1-like enhan 90.4 1.6 3.5E-05 40.4 8.5 76 138-214 18-100 (219)
458 PLN00033 photosystem II stabil 90.0 25 0.00054 36.0 23.7 106 133-249 241-354 (398)
459 COG4590 ABC-type uncharacteriz 89.8 9.7 0.00021 38.2 13.2 169 463-653 216-391 (733)
460 TIGR02276 beta_rpt_yvtn 40-res 89.7 1.4 3E-05 27.8 5.5 31 477-507 1-32 (42)
461 PF14727 PHTB1_N: PTHB1 N-term 89.7 27 0.00058 35.9 28.1 157 324-497 36-204 (418)
462 COG5167 VID27 Protein involved 89.6 19 0.0004 36.9 15.2 144 99-253 482-634 (776)
463 KOG4460 Nuclear pore complex, 89.5 7.2 0.00016 39.9 12.4 92 469-560 105-208 (741)
464 PF14761 HPS3_N: Hermansky-Pud 89.2 3 6.5E-05 37.6 8.7 51 6-57 29-81 (215)
465 PF07250 Glyoxal_oxid_N: Glyox 89.0 13 0.00028 34.9 13.1 139 418-563 66-210 (243)
466 KOG1900 Nuclear pore complex, 88.6 3.6 7.9E-05 47.0 10.8 140 104-254 96-275 (1311)
467 KOG2247 WD40 repeat-containing 88.5 0.037 8E-07 54.9 -3.8 136 99-248 48-185 (615)
468 TIGR02276 beta_rpt_yvtn 40-res 88.5 2 4.4E-05 27.0 5.6 41 3-44 1-42 (42)
469 PF14870 PSII_BNR: Photosynthe 88.4 26 0.00057 34.2 30.8 235 132-444 63-301 (302)
470 TIGR03606 non_repeat_PQQ dehyd 87.5 16 0.00034 38.0 13.8 112 467-585 29-166 (454)
471 PF02333 Phytase: Phytase; In 87.4 35 0.00075 34.4 21.5 198 98-344 69-291 (381)
472 PF14781 BBS2_N: Ciliary BBSom 87.4 15 0.00033 30.3 12.8 107 526-647 4-124 (136)
473 TIGR03606 non_repeat_PQQ dehyd 87.1 41 0.00089 35.0 29.1 32 221-252 29-60 (454)
474 KOG1898 Splicing factor 3b, su 86.8 62 0.0013 36.8 32.0 63 192-254 550-621 (1205)
475 PF14269 Arylsulfotran_2: Aryl 86.7 34 0.00073 33.6 16.6 124 469-593 58-219 (299)
476 KOG3616 Selective LIM binding 86.5 15 0.00032 39.3 13.0 71 179-252 13-84 (1636)
477 PF12657 TFIIIC_delta: Transcr 86.3 6.5 0.00014 34.9 9.4 31 222-252 86-122 (173)
478 PF11635 Med16: Mediator compl 86.2 66 0.0014 36.5 20.8 197 371-589 61-345 (753)
479 PF05935 Arylsulfotrans: Aryls 85.8 52 0.0011 35.0 17.5 111 107-221 167-313 (477)
480 PF02333 Phytase: Phytase; In 85.2 45 0.00097 33.7 22.6 189 5-253 68-292 (381)
481 KOG4659 Uncharacterized conser 84.7 88 0.0019 36.6 26.4 70 469-538 594-679 (1899)
482 TIGR03548 mutarot_permut cycli 84.2 48 0.001 33.1 19.2 107 141-252 72-195 (323)
483 PF12768 Rax2: Cortical protei 84.1 42 0.00091 32.4 14.3 97 489-597 16-124 (281)
484 KOG4460 Nuclear pore complex, 84.1 16 0.00034 37.6 11.4 85 132-216 105-205 (741)
485 PF14727 PHTB1_N: PTHB1 N-term 84.0 55 0.0012 33.7 31.3 292 193-554 39-364 (418)
486 COG1770 PtrB Protease II [Amin 83.9 68 0.0015 34.6 17.7 118 469-600 130-262 (682)
487 PF12657 TFIIIC_delta: Transcr 83.8 9.6 0.00021 33.8 9.2 33 564-596 86-123 (173)
488 PF07676 PD40: WD40-like Beta 83.0 5.1 0.00011 24.7 5.2 29 519-547 7-38 (39)
489 TIGR03548 mutarot_permut cycli 82.7 55 0.0012 32.7 18.6 111 95-213 71-198 (323)
490 COG5167 VID27 Protein involved 81.8 24 0.00052 36.2 11.6 144 9-209 484-632 (776)
491 TIGR03118 PEPCTERM_chp_1 conse 81.5 52 0.0011 31.7 25.8 248 184-587 26-326 (336)
492 PF07250 Glyoxal_oxid_N: Glyox 81.3 17 0.00036 34.1 10.0 31 363-393 170-200 (243)
493 PF03088 Str_synth: Strictosid 81.2 14 0.00029 28.3 7.7 41 540-583 35-75 (89)
494 KOG1900 Nuclear pore complex, 81.0 17 0.00037 42.0 11.5 153 12-210 96-273 (1311)
495 COG4257 Vgb Streptogramin lyas 80.3 53 0.0012 31.0 21.1 163 419-600 148-311 (353)
496 PF07676 PD40: WD40-like Beta 80.3 5.7 0.00012 24.5 4.7 30 128-157 6-38 (39)
497 KOG1898 Splicing factor 3b, su 80.0 1.2E+02 0.0025 34.8 36.4 107 474-594 940-1048(1205)
498 COG3292 Predicted periplasmic 80.0 85 0.0018 33.1 22.6 144 92-248 170-315 (671)
499 PF10433 MMS1_N: Mono-function 79.9 92 0.002 33.5 44.3 129 430-573 371-503 (504)
500 PF12768 Rax2: Cortical protei 78.3 33 0.00072 33.1 11.3 38 15-52 16-53 (281)
No 1
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.4e-70 Score=529.51 Aligned_cols=606 Identities=34% Similarity=0.569 Sum_probs=500.3
Q ss_pred CCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCC
Q 004581 4 PGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEND 83 (744)
Q Consensus 4 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (744)
+++||++.+.+|.|.+||+.++++++.++...+.||+|+.+|.+
T Consensus 79 e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~------------------------------------ 122 (691)
T KOG2048|consen 79 EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPEN------------------------------------ 122 (691)
T ss_pred cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCcc------------------------------------
Confidence 58999999999999999999999999999999999999999998
Q ss_pred CCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCc
Q 004581 84 SDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY 163 (744)
Q Consensus 84 ~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~ 163 (744)
..+++||+||.+..+++. .+.+.+.+.|...+++|.+++|+|++..|++|+.||.|++||+.++.
T Consensus 123 --------------~~l~IgcddGvl~~~s~~-p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~ 187 (691)
T KOG2048|consen 123 --------------TILAIGCDDGVLYDFSIG-PDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQ 187 (691)
T ss_pred --------------ceEEeecCCceEEEEecC-CceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCc
Confidence 689999999977777775 67888889999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCC
Q 004581 164 EIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG 243 (744)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg 243 (744)
.++..+....+..+.....||++.|..+++|++|++.|+|++||...|++++++..|.+.|.||+..+++++++++|.|+
T Consensus 188 t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~ 267 (691)
T KOG2048|consen 188 TLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDP 267 (691)
T ss_pred eEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCC
Confidence 99876666666666788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccC
Q 004581 244 QVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHL 323 (744)
Q Consensus 244 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 323 (744)
.|..|...+.. ..|+....+..|.++|++++..
T Consensus 268 ~ii~~~~~~~~-------------~~wv~~~~r~~h~hdvrs~av~---------------------------------- 300 (691)
T KOG2048|consen 268 KIIQYSLTTNK-------------SEWVINSRRDLHAHDVRSMAVI---------------------------------- 300 (691)
T ss_pred ceEEEEecCCc-------------cceeeeccccCCcccceeeeee----------------------------------
Confidence 99999988765 3498888999999999999984
Q ss_pred CCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEe-CCeEEEEEeeccCCcccCCCCC
Q 004581 324 GVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY-SCRLDILSVRLENNVESRSSSG 402 (744)
Q Consensus 324 ~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~i~i~~~~~~~~~~~~~~~~ 402 (744)
...+++|+.|..+.+-..+.+...........+.. ..+...|..+++... ...+.+|.+..... .
T Consensus 301 -~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~------~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~-------~ 366 (691)
T KOG2048|consen 301 -ENALISGGRDFTLAICSSREFKNMDHRQKNLFPAS------DRVSVAPENRLLVLWKAHGVDLWRLGSVIL-------Q 366 (691)
T ss_pred -cceEEecceeeEEEEccccccCchhhhcccccccc------ceeecCccceEEEEeccccccceeccCccc-------c
Confidence 12799999999999988876443322211111111 123344555555544 67889999886642 2
Q ss_pred CCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEE
Q 004581 403 GHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQL 482 (744)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l 482 (744)
|+.+...+.++..+....|.|.++||+|++||+++-..+++|.+.. +..+++ ......+.....++.+.|+-|++.+
T Consensus 367 g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~-~~~vk~--~~v~~~~~~~~~a~~i~ftid~~k~ 443 (691)
T KOG2048|consen 367 GEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQP-DPNVKV--INVDDVPLALLDASAISFTIDKNKL 443 (691)
T ss_pred cccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEecc-CcceeE--EEeccchhhhccceeeEEEecCceE
Confidence 4567788999999999999999999999999999999999999987 334443 2223344444478899999999998
Q ss_pred EEEe-CCCcEEEEEccCCc--eeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEe
Q 004581 483 IIAG-HDRRIYVVDVSSSE--LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFIS 559 (744)
Q Consensus 483 ~~~~-~dg~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~ 559 (744)
+..+ ....+.++++++.. .+..+.. .+....|+.+..||||+|||+.+.+|.|.+|++++.+..+...
T Consensus 444 ~~~s~~~~~le~~el~~ps~kel~~~~~---------~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~ 514 (691)
T KOG2048|consen 444 FLVSKNIFSLEEFELETPSFKELKSIQS---------QAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV 514 (691)
T ss_pred EEEecccceeEEEEecCcchhhhhcccc---------ccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh
Confidence 8887 67788888886543 3333322 1256789999999999999999999999999999999887776
Q ss_pred cCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCCCCCcEEEEEcC
Q 004581 560 RLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSA 639 (744)
Q Consensus 560 ~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~ 639 (744)
... ..+++++|+|.+.+.|+++.++++++.||++..+++.|++.++..+|+.++.....+.++.|+|. ++.++|+|++
T Consensus 515 rln-~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~-n~s~~~~~~a 592 (691)
T KOG2048|consen 515 RLN-IDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISFDPK-NSSRFIVYDA 592 (691)
T ss_pred ccC-cceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhccccccccChhhcCCCCceEEeCCC-CccEEEEEcC
Confidence 655 69999999976889999999999999999999999999999999999999999999999999976 8999999999
Q ss_pred ceEEEEeCCCCCCCCccCcccCCCchhhhhhccCCcccccccc-ccccccccccccCCcceEEEecccceEEeeecCCCe
Q 004581 640 RAMCVIDFGRPVDPDDETDMVSGQGSALRKIASTPINGRLKRK-LRDCQTESNKLHGRKNFEFFAFRDPVLFIGHLSKSS 718 (744)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 718 (744)
.|+|.+|+++|+|.+++..+.. +++. .+++.-|. ..+-.-.+..++...+|++.++|+|+||++.++++|
T Consensus 593 ~w~~~id~~~~lp~~~~~~~~~-----~~kt----~egn~~~~~~~g~~l~~~~~~~~~~f~~t~~y~pllfv~~ls~ne 663 (691)
T KOG2048|consen 593 HWSCLIDFSLPLPSDEDGPLKA-----LKKT----REGNLTRLLVNGNRLREYGEENGDGFKITKKYRPLLFVGLLSPNE 663 (691)
T ss_pred cEEEEEecCCCCCchhhccccc-----CCcc----cccchhhhhcccccchhhcccCCcccceeccccceeeecccCCcc
Confidence 9999999999998777432221 1110 00111110 000000123455677899899999999999999999
Q ss_pred EEEEec-ChHHHHhcCCC-CcccccCCC
Q 004581 719 MLIIDK-PWLEVVKTFDA-PVHRHIYGT 744 (744)
Q Consensus 719 l~vve~-p~~~~~~~lp~-~~~~~~~g~ 744 (744)
|++||| |+.++.+++|| ||+||+||+
T Consensus 664 l~~ver~pl~d~~~~~p~~~f~~kKFG~ 691 (691)
T KOG2048|consen 664 LVNVERVPLEDTGKSLPPTPFKRKKFGT 691 (691)
T ss_pred eEEEEecchHHhhccCCCCcceecccCC
Confidence 999999 99999999998 899999997
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-55 Score=395.25 Aligned_cols=367 Identities=19% Similarity=0.269 Sum_probs=296.8
Q ss_pred ceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEec
Q 004581 26 KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACD 105 (744)
Q Consensus 26 ~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 105 (744)
++-..+.||.++|-|++|+|+| ..||+|+.
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g--------------------------------------------------~~l~tGsG 135 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTG--------------------------------------------------SRLVTGSG 135 (480)
T ss_pred eeccccCCCCCcEEEEEecCCC--------------------------------------------------ceEEecCC
Confidence 3445688999999999999999 69999999
Q ss_pred CCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEE
Q 004581 106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWS 185 (744)
Q Consensus 106 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 185 (744)
|.++|+||+.+..++ .+.++|...|.|++|+|||+.||+|+.||+|++||.++|+++.+-.. +|...|.+
T Consensus 136 D~TvR~WD~~TeTp~---~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~-------gH~K~It~ 205 (480)
T KOG0271|consen 136 DTTVRLWDLDTETPL---FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALR-------GHKKWITA 205 (480)
T ss_pred CceEEeeccCCCCcc---eeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccccccc-------CcccceeE
Confidence 999999999987777 89999999999999999999999999999999999999988755432 89999999
Q ss_pred EEEecC-----C-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCC
Q 004581 186 LLSLRC-----G-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPND 259 (744)
Q Consensus 186 ~~~~~~-----~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 259 (744)
++|.|- . +|++++.||.|+|||+..++++..+.+|+.+|+|+.|--+| +|++|+.|++|++|+...+.+
T Consensus 206 Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~---- 280 (480)
T KOG0271|consen 206 LAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKL---- 280 (480)
T ss_pred EeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhH----
Confidence 999873 2 79999999999999999999999999999999999998765 899999999999999988773
Q ss_pred CCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEE
Q 004581 260 GLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFA 339 (744)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~ 339 (744)
+..+.+|.+.|+.++++.+. .|-+|..|.+=+-
T Consensus 281 -------------~r~lkGHahwvN~lalsTdy----------------------------------~LRtgaf~~t~~~ 313 (480)
T KOG0271|consen 281 -------------CRELKGHAHWVNHLALSTDY----------------------------------VLRTGAFDHTGRK 313 (480)
T ss_pred -------------HHhhcccchheeeeeccchh----------------------------------hhhcccccccccc
Confidence 78899999999999997322 1222222221111
Q ss_pred EecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCC
Q 004581 340 YCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASR 419 (744)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (744)
....+..+...... | .
T Consensus 314 ~~~~se~~~~Al~r---------------------------------Y-------------------------------~ 329 (480)
T KOG0271|consen 314 PKSFSEEQKKALER---------------------------------Y-------------------------------E 329 (480)
T ss_pred CCChHHHHHHHHHH---------------------------------H-------------------------------H
Confidence 11100000000000 0 0
Q ss_pred CeEEEEEcCCCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccC
Q 004581 420 KIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS 498 (744)
Q Consensus 420 ~i~~~~~s~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~ 498 (744)
.+ .-..+..+++ ++|.++.+|+... ....+ .++.+|..-|+.+.||||++++|+++-|..|++||-.+
T Consensus 330 ~~----~~~~~erlVSgsDd~tlflW~p~~--~kkpi-----~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t 398 (480)
T KOG0271|consen 330 AV----LKDSGERLVSGSDDFTLFLWNPFK--SKKPI-----TRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT 398 (480)
T ss_pred Hh----hccCcceeEEecCCceEEEecccc--cccch-----hhhhchhhheeeEEECCCccEEEEeecccceeeeeCCC
Confidence 00 0001122333 3445555555432 11111 45678888999999999999999999999999999999
Q ss_pred CceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCe
Q 004581 499 SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNV 578 (744)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~ 578 (744)
|+.+.+|.+ |-..|..++||.|.++|++++.|.++++|++.+.+....+++ |...|.++.|+| ||..
T Consensus 399 Gk~lasfRG-----------Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpG-h~DEVf~vDwsp-DG~r 465 (480)
T KOG0271|consen 399 GKFLASFRG-----------HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPG-HADEVFAVDWSP-DGQR 465 (480)
T ss_pred cchhhhhhh-----------ccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCC-CCceEEEEEecC-CCce
Confidence 999999999 999999999999999999999999999999999999888877 678999999999 9999
Q ss_pred EEEEecCCeEEEEE
Q 004581 579 LIITTSSNQVYVFD 592 (744)
Q Consensus 579 l~~~~~d~~v~vwd 592 (744)
+++++.|..+++|.
T Consensus 466 V~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 466 VASGGKDKVLRLWR 479 (480)
T ss_pred eecCCCceEEEeec
Confidence 99999999999994
No 3
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.8e-52 Score=390.27 Aligned_cols=481 Identities=16% Similarity=0.218 Sum_probs=375.9
Q ss_pred CCCCCCeeEEecCCCeEEEEEccC-Cc-eeEEeeccCcceeEEeeccCCCccccccccccccCCc-cccCCCC--CCCCC
Q 004581 1 MGLPGGRLFSSSIDGSVSEWDLYD-LK-QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNG-YLNDKSN--DSDDH 75 (744)
Q Consensus 1 ~~~~~~~l~~~~~d~~i~iwd~~~-~~-~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~ 75 (744)
++|.|-++|+|...|+|+|||... .. +..+++...++|..++|++|+++++..+.....-+.. +|+.-+. ...++
T Consensus 67 ySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~Gh 146 (603)
T KOG0318|consen 67 YSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGH 146 (603)
T ss_pred eCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeecc
Confidence 478899999999999999999865 23 3346888899999999999999998876655554443 3443331 11111
Q ss_pred cCccCCCCCCccccccccc--ccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCe
Q 004581 76 ETSESENDSDSDELHEQSV--VEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGY 153 (744)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~ 153 (744)
.... ....+ ...=++++|++|++|.+|+ |.++.+..+++.|..-|.|+.|+|||.++||++.||.
T Consensus 147 Sr~i----------ns~~~KpsRPfRi~T~sdDn~v~ffe---GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk 213 (603)
T KOG0318|consen 147 SRRI----------NSVDFKPSRPFRIATGSDDNTVAFFE---GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK 213 (603)
T ss_pred ceeE----------eeeeccCCCceEEEeccCCCeEEEee---CCCeeeeecccccccceeeEEECCCCCeEEEecCCcc
Confidence 1111 00001 1113899999999999997 6688888999999999999999999999999999999
Q ss_pred EEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEE----------------
Q 004581 154 IRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQA---------------- 216 (744)
Q Consensus 154 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~---------------- 216 (744)
|.+||=.+|+.+..+.. ...|.+.|++++|+||+ ++++++.|.+++|||+.+.+++++
T Consensus 214 i~iyDGktge~vg~l~~-----~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW 288 (603)
T KOG0318|consen 214 IYIYDGKTGEKVGELED-----SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW 288 (603)
T ss_pred EEEEcCCCccEEEEecC-----CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE
Confidence 99999999999999874 22799999999999999 999999999999999987655433
Q ss_pred ---------------------------eeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccce
Q 004581 217 ---------------------------HSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKK 269 (744)
Q Consensus 217 ---------------------------~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 269 (744)
+.+|...|++++.+|++.+|++|+.||.|.-|+...+..
T Consensus 289 qkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~-------------- 354 (603)
T KOG0318|consen 289 QKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS-------------- 354 (603)
T ss_pred eCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc--------------
Confidence 567999999999999999999999999999999998762
Q ss_pred EEEEeee--eeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCC
Q 004581 270 WIYVGSV--RAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTK 347 (744)
Q Consensus 270 ~~~~~~~--~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~ 347 (744)
..+ .+|+..|.+++.+ + ...+++.+.|.++++.++.....
T Consensus 355 ----~~~~g~~h~nqI~~~~~~----------~------------------------~~~~~t~g~Dd~l~~~~~~~~~~ 396 (603)
T KOG0318|consen 355 ----DRLAGKGHTNQIKGMAAS----------E------------------------SGELFTIGWDDTLRVISLKDNGY 396 (603)
T ss_pred ----cccccccccceEEEEeec----------C------------------------CCcEEEEecCCeEEEEecccCcc
Confidence 223 6799999999874 1 12799999999999998864322
Q ss_pred CCCcccCCCCCCCccccccceeecCCe-EEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEE
Q 004581 348 FSPHEICPAPQRVPIHLVHNTIFSHTS-LLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTI 426 (744)
Q Consensus 348 ~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 426 (744)
..... .... ....+++..+++ ..+++....+.+.+-.. .+..+. -.....++++
T Consensus 397 t~~~~-~~lg-----~QP~~lav~~d~~~avv~~~~~iv~l~~~~-----------------~~~~~~--~~y~~s~vAv 451 (603)
T KOG0318|consen 397 TKSEV-VKLG-----SQPKGLAVLSDGGTAVVACISDIVLLQDQT-----------------KVSSIP--IGYESSAVAV 451 (603)
T ss_pred cccce-eecC-----CCceeEEEcCCCCEEEEEecCcEEEEecCC-----------------cceeec--cccccceEEE
Confidence 11110 0011 122266777764 55555555555544211 122222 2366789999
Q ss_pred cCCCCEEEEE-cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeee
Q 004581 427 SNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTF 505 (744)
Q Consensus 427 s~~g~~la~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~ 505 (744)
+|+++.+|+| .|+.+++|.+.... . .+...+..|..++++++||||+.+||++...+.+.+||+++.+.....
T Consensus 452 ~~~~~~vaVGG~Dgkvhvysl~g~~--l----~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~ 525 (603)
T KOG0318|consen 452 SPDGSEVAVGGQDGKVHVYSLSGDE--L----KEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNR 525 (603)
T ss_pred cCCCCEEEEecccceEEEEEecCCc--c----cceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecce
Confidence 9999999995 99999999997521 1 222456677889999999999999999999999999999887763332
Q ss_pred ccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecC
Q 004581 506 TPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSS 585 (744)
Q Consensus 506 ~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d 585 (744)
.. .|...|.+++|||+.+++|+|+.|..|.||+++.......++..|...|+.+.|- |...|++++.|
T Consensus 526 w~----------FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl--de~tvvSsG~D 593 (603)
T KOG0318|consen 526 WA----------FHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL--DESTVVSSGQD 593 (603)
T ss_pred ee----------eeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe--cCceEEeccCc
Confidence 22 2899999999999999999999999999999999888888888898889999998 57889999999
Q ss_pred CeEEEEEcC
Q 004581 586 NQVYVFDVE 594 (744)
Q Consensus 586 ~~v~vwd~~ 594 (744)
..|++|++.
T Consensus 594 a~iK~W~v~ 602 (603)
T KOG0318|consen 594 ANIKVWNVT 602 (603)
T ss_pred ceeEEeccc
Confidence 999999975
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.2e-52 Score=408.62 Aligned_cols=508 Identities=16% Similarity=0.142 Sum_probs=400.6
Q ss_pred CCCCCeeEEecCCCeEEEEEccCCceeEEeec-cCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccC
Q 004581 2 GLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQS-IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSES 80 (744)
Q Consensus 2 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (744)
.+++.+|++++....+++|++++++.++..+. |.++|.-|+|+|.+
T Consensus 71 ~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g--------------------------------- 117 (775)
T KOG0319|consen 71 TPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTG--------------------------------- 117 (775)
T ss_pred cCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCC---------------------------------
Confidence 56788899999999999999999999999998 99999999999999
Q ss_pred CCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCC--EEEEEeCCCeEEEEE
Q 004581 81 ENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN--MLYSGSSDGYIRSWD 158 (744)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~--~l~t~~~dg~i~vwd 158 (744)
..||+|+.||.|++||+..+... +.|+||.+.|.++.|+|+-. .|++|..|+++++||
T Consensus 118 -----------------~LlAtggaD~~v~VWdi~~~~~t---h~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwn 177 (775)
T KOG0319|consen 118 -----------------TLLATGGADGRVKVWDIKNGYCT---HSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWN 177 (775)
T ss_pred -----------------ceEEeccccceEEEEEeeCCEEE---EEecCCCceEEEEEeCCccchhheeecCCCceEEEEE
Confidence 58999999999999999866666 99999999999999999765 589999999999999
Q ss_pred ccCCce-EEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCC----
Q 004581 159 AKLGYE-IYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPS---- 232 (744)
Q Consensus 159 ~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~---- 232 (744)
+++... +..+. .|.+.|++++|++|+ .+++++.|..+.+||+.+.+...++.. ...+-++.+.++
T Consensus 178 l~~~~tcl~~~~--------~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~-ye~~E~vv~l~~~~~~ 248 (775)
T KOG0319|consen 178 LNDKRTCLHTMI--------LHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPL-YESLESVVRLREELGG 248 (775)
T ss_pred cccCchHHHHHH--------hhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheech-hhheeeEEEechhcCC
Confidence 986655 55565 699999999999999 899999999999999987777777664 346677777776
Q ss_pred -CCEEEeecCCCeEEEEEcccCcCCCCCCCC---------ccccc-----------------ceEEEEeeeeeccCccee
Q 004581 233 -HNRVFSTGSDGQVILYKASCESIGPNDGLS---------SSEVI-----------------KKWIYVGSVRAHTHDVRA 285 (744)
Q Consensus 233 -~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---------~~~~~-----------------~~~~~~~~~~~h~~~v~~ 285 (744)
+.+++++|.+|.+++||..+.......... ..... ........+-+....|..
T Consensus 249 ~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~D 328 (775)
T KOG0319|consen 249 KGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILD 328 (775)
T ss_pred cceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhhee
Confidence 679999999999999999886541110000 00000 001111222233344444
Q ss_pred eeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccc
Q 004581 286 LTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLV 365 (744)
Q Consensus 286 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v 365 (744)
++|- .+..++|+.++..+.+++|+..+..-. -...|...+
T Consensus 329 m~~l--------------------------------G~e~~~laVATNs~~lr~y~~~~~~c~--------ii~GH~e~v 368 (775)
T KOG0319|consen 329 MKFL--------------------------------GPEESHLAVATNSPELRLYTLPTSYCQ--------IIPGHTEAV 368 (775)
T ss_pred eeec--------------------------------CCccceEEEEeCCCceEEEecCCCceE--------EEeCchhhe
Confidence 4442 344569999999999999987664322 223456788
Q ss_pred cceeecCCeEEEEEeC--CeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC-CEEEE-EcCCce
Q 004581 366 HNTIFSHTSLLLVQYS--CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG-MLFAY-SDHVKP 441 (744)
Q Consensus 366 ~~~~~s~~~~~l~~~~--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~la~-~~~~~v 441 (744)
.++....+|.++++++ .++.+|+++..... ..+......|...|.+++++..+ .++++ +.|.++
T Consensus 369 lSL~~~~~g~llat~sKD~svilWr~~~~~~~------------~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tl 436 (775)
T KOG0319|consen 369 LSLDVWSSGDLLATGSKDKSVILWRLNNNCSK------------SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTL 436 (775)
T ss_pred eeeeecccCcEEEEecCCceEEEEEecCCcch------------hhhhhhhcccccccceeeecccCccEEEEecCCceE
Confidence 8888777787888775 49999999443322 13334446778899999998877 55666 699999
Q ss_pred EEEEeecCCCCCceEEee-eccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCC
Q 004581 442 SLFELKKGKVGQGEWIIN-KRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSE 520 (744)
Q Consensus 442 ~l~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (744)
++|.+...........+. ......|...|++++++|+.+++|+|+.|.+.+||+++.+++..++.+ |.
T Consensus 437 K~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsG-----------H~ 505 (775)
T KOG0319|consen 437 KLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSG-----------HT 505 (775)
T ss_pred EEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeC-----------Cc
Confidence 999997622221111111 123345777999999999999999999999999999999999999999 99
Q ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCcccc
Q 004581 521 PPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGE 600 (744)
Q Consensus 521 ~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ 600 (744)
..|.++.|+|..+.+|++|.|++|+||.+++..+..++.+ |...|..++|-. ++..|+++++||-+++|++++++
T Consensus 506 RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG-H~~aVlra~F~~-~~~qliS~~adGliKlWnikt~e--- 580 (775)
T KOG0319|consen 506 RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG-HTSAVLRASFIR-NGKQLISAGADGLIKLWNIKTNE--- 580 (775)
T ss_pred cceEEEEeccccceeEeccCCceEEEEEeccceeeeeecC-ccceeEeeeeee-CCcEEEeccCCCcEEEEeccchh---
Confidence 9999999999999999999999999999999999999976 678999999999 99999999999999999999996
Q ss_pred ccccccCCcccccccCCCceEEEEeCCCCCCcEEEEEcCceEEEEeCCCCC
Q 004581 601 WSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGRPV 651 (744)
Q Consensus 601 ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~~~~~~~~~~~ 651 (744)
+...+..|++.|++++-+|++ + ++ +++.+.-+|.+.+..
T Consensus 581 --------C~~tlD~H~DrvWaL~~~~~~--~-~~-~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 581 --------CEMTLDAHNDRVWALSVSPLL--D-MF-VTGGGDGRIIFWKDV 619 (775)
T ss_pred --------hhhhhhhccceeEEEeecCcc--c-ee-EecCCCeEEEEeecC
Confidence 577899999999999999974 3 33 333333444444443
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-51 Score=370.07 Aligned_cols=316 Identities=20% Similarity=0.269 Sum_probs=284.0
Q ss_pred CCCCCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccC
Q 004581 1 MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSES 80 (744)
Q Consensus 1 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (744)
++|.|.+|++|+.|.++++||+.|..+..+.++|...|.|++|+|||
T Consensus 123 fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDg--------------------------------- 169 (480)
T KOG0271|consen 123 FSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDG--------------------------------- 169 (480)
T ss_pred ecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCc---------------------------------
Confidence 46788899999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEec-----CCCEEEEEeCCCeEE
Q 004581 81 ENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA-----DGNMLYSGSSDGYIR 155 (744)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~-----dg~~l~t~~~dg~i~ 155 (744)
..||+|+.||.|++||..+++++- +.|.+|...|++++|.| ..++||+++.||+|+
T Consensus 170 -----------------k~iASG~~dg~I~lwdpktg~~~g--~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vr 230 (480)
T KOG0271|consen 170 -----------------KKIASGSKDGSIRLWDPKTGQQIG--RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVR 230 (480)
T ss_pred -----------------chhhccccCCeEEEecCCCCCccc--ccccCcccceeEEeecccccCCCccceecccCCCCEE
Confidence 589999999999999998888765 89999999999999976 678999999999999
Q ss_pred EEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEc-----
Q 004581 156 SWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAA----- 230 (744)
Q Consensus 156 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~----- 230 (744)
|||+..+.++..+. +|...|+|+.|--+|+|++|+.|++|++|+...|.+...+++|...|+.|+.+
T Consensus 231 IWd~~~~~~~~~ls--------gHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~L 302 (480)
T KOG0271|consen 231 IWDTKLGTCVRTLS--------GHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVL 302 (480)
T ss_pred EEEccCceEEEEec--------cCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhh
Confidence 99999999999998 89999999999999999999999999999999999999999999999999887
Q ss_pred ------CCC-------------------------CEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeec
Q 004581 231 ------PSH-------------------------NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAH 279 (744)
Q Consensus 231 ------~~~-------------------------~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 279 (744)
|.+ ..+++|+.|.++.+|+...... ++..+.+|
T Consensus 303 Rtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk----------------pi~rmtgH 366 (480)
T KOG0271|consen 303 RTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK----------------PITRMTGH 366 (480)
T ss_pred hccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc----------------chhhhhch
Confidence 223 3599999999999998765432 35567788
Q ss_pred cCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCC
Q 004581 280 THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQR 359 (744)
Q Consensus 280 ~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~ 359 (744)
..-|..+.|+ ||++ ++++++.|.+|++|+.++.+
T Consensus 367 q~lVn~V~fS---------Pd~r------------------------~IASaSFDkSVkLW~g~tGk------------- 400 (480)
T KOG0271|consen 367 QALVNHVSFS---------PDGR------------------------YIASASFDKSVKLWDGRTGK------------- 400 (480)
T ss_pred hhheeeEEEC---------CCcc------------------------EEEEeecccceeeeeCCCcc-------------
Confidence 8888888887 7776 88888888888888876422
Q ss_pred CccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCC
Q 004581 360 VPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHV 439 (744)
Q Consensus 360 ~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~ 439 (744)
T Consensus 401 -------------------------------------------------------------------------------- 400 (480)
T KOG0271|consen 401 -------------------------------------------------------------------------------- 400 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCC
Q 004581 440 KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPS 519 (744)
Q Consensus 440 ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 519 (744)
.+ ..+.+|...|..++||.|.++|++++.|.++++||+.+.++...+.+ |
T Consensus 401 --------------~l-----asfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpG-----------h 450 (480)
T KOG0271|consen 401 --------------FL-----ASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPG-----------H 450 (480)
T ss_pred --------------hh-----hhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCC-----------C
Confidence 11 34567777999999999999999999999999999999999999998 9
Q ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEE
Q 004581 520 EPPITKMFTSSDGQWLAAVNCFGDVYIFN 548 (744)
Q Consensus 520 ~~~i~~l~~spdg~~las~~~dg~i~iwd 548 (744)
..+|.++.|||||+.+++|+.|..+++|.
T Consensus 451 ~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 451 ADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999999999994
No 6
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.7e-49 Score=383.19 Aligned_cols=454 Identities=17% Similarity=0.228 Sum_probs=366.1
Q ss_pred CCCCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCC
Q 004581 2 GLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESE 81 (744)
Q Consensus 2 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (744)
.+-+..|++||.|+.|++||+..+.+.+.|+||++.|+++.|+|+-.+.
T Consensus 114 ~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~------------------------------- 162 (775)
T KOG0319|consen 114 DPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRW------------------------------- 162 (775)
T ss_pred cCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchh-------------------------------
Confidence 3556779999999999999999999999999999999999999998543
Q ss_pred CCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 004581 82 NDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL 161 (744)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~ 161 (744)
.|++|..|++|++||+.+... +...+..|...|++++|++|+..+++++.|..+.|||+.+
T Consensus 163 -----------------lL~sg~~D~~v~vwnl~~~~t--cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~ 223 (775)
T KOG0319|consen 163 -----------------LLASGATDGTVRVWNLNDKRT--CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQ 223 (775)
T ss_pred -----------------heeecCCCceEEEEEcccCch--HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhh
Confidence 799999999999999985444 3388999999999999999999999999999999999987
Q ss_pred CceEEEEEecCCCCCCCCceeEEEEEEecC-----C-eEEEEcCCCCEEEEeCCCcceEEE-------------------
Q 004581 162 GYEIYRITVGLGGLGSGPELCIWSLLSLRC-----G-TLVSADSTGSVQFWDSRHGTLLQA------------------- 216 (744)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~-~l~s~~~dg~i~vwd~~~~~~~~~------------------- 216 (744)
.+....+. .-..+.++.+.++ + ++++.+.+|.+++||.++++++..
T Consensus 224 ~~~l~~lp---------~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~ 294 (775)
T KOG0319|consen 224 YKKLKTLP---------LYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMS 294 (775)
T ss_pred hhhhheec---------hhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccC
Confidence 77776665 3445666667666 4 788888889999998876544321
Q ss_pred ------------------------eeccccceeEEEEc-CCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEE
Q 004581 217 ------------------------HSFHKGDVNALAAA-PSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWI 271 (744)
Q Consensus 217 ------------------------~~~h~~~v~~l~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 271 (744)
+-|....|..++|- |+.++|++++..+.+++|+..+..
T Consensus 295 ~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~----------------- 357 (775)
T KOG0319|consen 295 QLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSY----------------- 357 (775)
T ss_pred ceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCc-----------------
Confidence 22344567777764 556788888888888888777655
Q ss_pred EEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCc
Q 004581 272 YVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPH 351 (744)
Q Consensus 272 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~ 351 (744)
...+.+|+..|.++... . .+.+|++|+.|.++++|.+++.. ..
T Consensus 358 -c~ii~GH~e~vlSL~~~---------~------------------------~g~llat~sKD~svilWr~~~~~---~~ 400 (775)
T KOG0319|consen 358 -CQIIPGHTEAVLSLDVW---------S------------------------SGDLLATGSKDKSVILWRLNNNC---SK 400 (775)
T ss_pred -eEEEeCchhheeeeeec---------c------------------------cCcEEEEecCCceEEEEEecCCc---ch
Confidence 45778999999999843 1 22499999999999999884322 11
Q ss_pred ccCCCCCCCccccccceeecCCeE-EEEE--eCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcC
Q 004581 352 EICPAPQRVPIHLVHNTIFSHTSL-LLVQ--YSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISN 428 (744)
Q Consensus 352 ~~~~~~~~~~~~~v~~~~~s~~~~-~l~~--~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 428 (744)
..+......|.+.+.+++++..+. ++++ .+..+++|.+........ ............|...|.|++++|
T Consensus 401 ~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~-------~~~~~~~~t~~aHdKdIN~Vaia~ 473 (775)
T KOG0319|consen 401 SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF-------PIVLTCRYTERAHDKDINCVAIAP 473 (775)
T ss_pred hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc-------cceehhhHHHHhhcccccceEecC
Confidence 222233445667888888876443 4444 456999999987332211 000111223467889999999999
Q ss_pred CCCEEEEE-cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeecc
Q 004581 429 SGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTP 507 (744)
Q Consensus 429 ~g~~la~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 507 (744)
+.+++|++ .|.+.++|+++. .... ..+.+|..++.++.|+|..+.+++++.|++|+||.++++.++++|.+
T Consensus 474 ndkLiAT~SqDktaKiW~le~---~~l~-----~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG 545 (775)
T KOG0319|consen 474 NDKLIATGSQDKTAKIWDLEQ---LRLL-----GVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG 545 (775)
T ss_pred CCceEEecccccceeeecccC---ceEE-----EEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecC
Confidence 99999995 899999999973 2222 67889999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCe
Q 004581 508 CREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQ 587 (744)
Q Consensus 508 ~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~ 587 (744)
|...|..+.|-.+|+.|++++.||.|++|+++++.+..++.. |...|++++-+| ...++++|+.||.
T Consensus 546 -----------H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~-H~DrvWaL~~~~-~~~~~~tgg~Dg~ 612 (775)
T KOG0319|consen 546 -----------HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDA-HNDRVWALSVSP-LLDMFVTGGGDGR 612 (775)
T ss_pred -----------ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhh-ccceeEEEeecC-ccceeEecCCCeE
Confidence 999999999999999999999999999999999999999965 778999999999 8899999999999
Q ss_pred EEEEEcCCC
Q 004581 588 VYVFDVEAK 596 (744)
Q Consensus 588 v~vwd~~~~ 596 (744)
|.+|.=.+.
T Consensus 613 i~~wkD~Te 621 (775)
T KOG0319|consen 613 IIFWKDVTE 621 (775)
T ss_pred EEEeecCcH
Confidence 999965443
No 7
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-46 Score=367.78 Aligned_cols=525 Identities=17% Similarity=0.215 Sum_probs=380.9
Q ss_pred CeeEEecCCCeEEEEEccCCceeEEee--ccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCC
Q 004581 6 GRLFSSSIDGSVSEWDLYDLKQKIVLQ--SIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEND 83 (744)
Q Consensus 6 ~~l~~~~~d~~i~iwd~~~~~~~~~~~--~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (744)
++.++++.-..|.+||+.+|.....+. .-...|+|+.-+|+.
T Consensus 34 Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~------------------------------------ 77 (888)
T KOG0306|consen 34 GRAVAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDI------------------------------------ 77 (888)
T ss_pred CcEEEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCc------------------------------------
Confidence 566666667789999999995444322 234689999999988
Q ss_pred CCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCc
Q 004581 84 SDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY 163 (744)
Q Consensus 84 ~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~ 163 (744)
.+||+|..||.|+||+..++..+ .++.+|..+|+++.|+..|..|++|+.|+.|.+||+-...
T Consensus 78 --------------l~lAVGYaDGsVqif~~~s~~~~---~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~ 140 (888)
T KOG0306|consen 78 --------------LLLAVGYADGSVQIFSLESEEIL---ITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEE 140 (888)
T ss_pred --------------ceEEEEecCceEEeeccCCCcee---eeecccccceEEEEEcccCceEeecCCCccEEEEEeccce
Confidence 58999999999999999866555 8899999999999999999999999999999999998888
Q ss_pred eEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCC
Q 004581 164 EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD 242 (744)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~d 242 (744)
-..++. +|...|+...|..+. .+++.+.|+.|++||+++..+..+.-.|.+.|..+++.+ +.+++++.|
T Consensus 141 Gl~rL~--------GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~d 210 (888)
T KOG0306|consen 141 GLFRLR--------GHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTD 210 (888)
T ss_pred eeEEee--------cchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecC
Confidence 888888 899999999999844 899999999999999999999999999999999999987 689999999
Q ss_pred CeEEEEEcccCcCC------------------CCC---CCCcccccceEEEEe---------------------------
Q 004581 243 GQVILYKASCESIG------------------PND---GLSSSEVIKKWIYVG--------------------------- 274 (744)
Q Consensus 243 g~i~iw~~~~~~~~------------------~~~---~~~~~~~~~~~~~~~--------------------------- 274 (744)
+.+++|++....-. ..+ .+.. ....++....
T Consensus 211 se~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~-d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~ 289 (888)
T KOG0306|consen 211 SELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVT-DFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKR 289 (888)
T ss_pred CceEEEEeecccccccccccceeeccceeeeccCCceeEEee-cCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHH
Confidence 99999999211100 000 0000 0000000000
Q ss_pred -----e-----------e---------eeccCcceeeeeeccCCCC-----CC---------CCcccccccCCCCCCccc
Q 004581 275 -----S-----------V---------RAHTHDVRALTVAVPISRE-----DP---------LPEDKVKRSRGREKPIDF 315 (744)
Q Consensus 275 -----~-----------~---------~~h~~~v~~l~~~~~~~~~-----~~---------~~~~~~~~~~~~~~~~~~ 315 (744)
. + -.-...+.++.+.+..... .. .+.++..........+.+
T Consensus 290 ~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~ 369 (888)
T KOG0306|consen 290 AKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEI 369 (888)
T ss_pred hhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeee
Confidence 0 0 0000111111111110000 00 000000000000000111
Q ss_pred ccc-----ccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEe--CCeEEEEE
Q 004581 316 SYH-----KWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY--SCRLDILS 388 (744)
Q Consensus 316 ~~~-----~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~~i~i~~ 388 (744)
..+ .........++..+..+.+.+|+..+.+...... ...+.+..|-|..++++.+ ++.+.+++
T Consensus 370 ~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~---------~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 370 GGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTIT---------CGYILASKFVPGDRYIVLGTKNGELQVFD 440 (888)
T ss_pred ccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEec---------cccEEEEEecCCCceEEEeccCCceEEEE
Confidence 000 0111122344444557899999998766443332 1356677788877777665 56899999
Q ss_pred eeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCceEEEEeecCCC----CCceEEeeeccC
Q 004581 389 VRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKV----GQGEWIINKRQL 463 (744)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~~~~~----~~~~~~~~~~~~ 463 (744)
+.... .+.++. .|.+.|.+++.+||++.+++ +.|.+|++|++..... ..++..+.....
T Consensus 441 laS~~---------------l~Eti~-AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rt 504 (888)
T KOG0306|consen 441 LASAS---------------LVETIR-AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRT 504 (888)
T ss_pred eehhh---------------hhhhhh-ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceE
Confidence 88665 333333 78899999999999988888 5999999999874211 112222322222
Q ss_pred CcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCc
Q 004581 464 PRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGD 543 (744)
Q Consensus 464 ~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~ 543 (744)
......+.++.+||||++||++--|.+|+||-+++.+..-++.+ |.-+|.+|..|||++.++||+.|.+
T Consensus 505 Lel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYG-----------HkLPV~smDIS~DSklivTgSADKn 573 (888)
T KOG0306|consen 505 LELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYG-----------HKLPVLSMDISPDSKLIVTGSADKN 573 (888)
T ss_pred EeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecc-----------cccceeEEeccCCcCeEEeccCCCc
Confidence 23334899999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred EEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCcccccccCCCceEEE
Q 004581 544 VYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGL 623 (744)
Q Consensus 544 i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i 623 (744)
|+||-++=|.++..+.. |...|.++.|.| ...++++++.|+.|+-||-+.-+ +.+.+.+|...|+++
T Consensus 574 VKiWGLdFGDCHKS~fA-HdDSvm~V~F~P-~~~~FFt~gKD~kvKqWDg~kFe-----------~iq~L~~H~~ev~cL 640 (888)
T KOG0306|consen 574 VKIWGLDFGDCHKSFFA-HDDSVMSVQFLP-KTHLFFTCGKDGKVKQWDGEKFE-----------EIQKLDGHHSEVWCL 640 (888)
T ss_pred eEEeccccchhhhhhhc-ccCceeEEEEcc-cceeEEEecCcceEEeechhhhh-----------hheeeccchheeeee
Confidence 99999999999988865 668999999999 88999999999999999987664 466799999999999
Q ss_pred EeCCCCCCcEEEEEcCceEEEEeC
Q 004581 624 SFSPSPSSSSVIIYSARAMCVIDF 647 (744)
Q Consensus 624 ~fspdg~~~~~~~~~~~~~~~~~~ 647 (744)
+.+|+|. + +.+++....|++
T Consensus 641 av~~~G~---~-vvs~shD~sIRl 660 (888)
T KOG0306|consen 641 AVSPNGS---F-VVSSSHDKSIRL 660 (888)
T ss_pred EEcCCCC---e-EEeccCCceeEe
Confidence 9999974 4 344444555665
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=8.4e-45 Score=341.62 Aligned_cols=462 Identities=18% Similarity=0.242 Sum_probs=362.6
Q ss_pred CCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccc
Q 004581 14 DGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQS 93 (744)
Q Consensus 14 d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (744)
...|.+-+++.+.....+..|...++-..|||.|
T Consensus 38 Gksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG---------------------------------------------- 71 (603)
T KOG0318|consen 38 GKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSG---------------------------------------------- 71 (603)
T ss_pred CCEEEEEECCCccceeeeccccceeEEEEeCCCc----------------------------------------------
Confidence 3567888888888888899999999999999999
Q ss_pred cccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCC----CeEEEEEccCCceEEEEE
Q 004581 94 VVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD----GYIRSWDAKLGYEIYRIT 169 (744)
Q Consensus 94 ~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~d----g~i~vwd~~~~~~~~~~~ 169 (744)
-++|+|...|.|||||... +...+..+++.-.++|..++|++|+++++..++. |.+.+|| +|..+..+.
T Consensus 72 ----~yiASGD~sG~vRIWdtt~-~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~SvGei~ 144 (603)
T KOG0318|consen 72 ----FYIASGDVSGKVRIWDTTQ-KEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SGNSVGEIT 144 (603)
T ss_pred ----eEEeecCCcCcEEEEeccC-cceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec--CCCccceee
Confidence 5899999999999999974 3333446777788999999999999999888753 3455665 788888888
Q ss_pred ecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEE
Q 004581 170 VGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVIL 247 (744)
Q Consensus 170 ~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~i 247 (744)
+|...|.++.|-|.. ++++|+.|++|.+|+-.-.+...+++.|..-|.|+.|+|||.++++++.||++.+
T Consensus 145 --------GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~i 216 (603)
T KOG0318|consen 145 --------GHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYI 216 (603)
T ss_pred --------ccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEE
Confidence 899999999999998 8999999999999998878888889999999999999999999999999999999
Q ss_pred EEcccCcCCCCCCCCcccccceEEEEeeee---eccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCC
Q 004581 248 YKASCESIGPNDGLSSSEVIKKWIYVGSVR---AHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLG 324 (744)
Q Consensus 248 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 324 (744)
||-.+++. +..+. +|.+.|.+++|+ ||++
T Consensus 217 yDGktge~-----------------vg~l~~~~aHkGsIfalsWs---------PDs~---------------------- 248 (603)
T KOG0318|consen 217 YDGKTGEK-----------------VGELEDSDAHKGSIFALSWS---------PDST---------------------- 248 (603)
T ss_pred EcCCCccE-----------------EEEecCCCCccccEEEEEEC---------CCCc----------------------
Confidence 99888773 55555 899999999998 7776
Q ss_pred CcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCC
Q 004581 325 VPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGH 404 (744)
Q Consensus 325 ~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~ 404 (744)
.+++++.|.++++||..+......... ... ....-..+.|..+..+.++-++.+.+++.....
T Consensus 249 --~~~T~SaDkt~KIWdVs~~slv~t~~~---~~~-v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~----------- 311 (603)
T KOG0318|consen 249 --QFLTVSADKTIKIWDVSTNSLVSTWPM---GST-VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPS----------- 311 (603)
T ss_pred --eEEEecCCceEEEEEeeccceEEEeec---CCc-hhceEEEEEEeCCeEEEEEcCcEEEEecccCCC-----------
Confidence 999999999999999987654333221 111 112233445556666667778888888766543
Q ss_pred CCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCCC------------------------------C
Q 004581 405 ASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVG------------------------------Q 453 (744)
Q Consensus 405 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~------------------------------~ 453 (744)
+.....+|...|++++.+|++++|.++ .||.|.-|+...+... .
T Consensus 312 -----~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l 386 (603)
T KOG0318|consen 312 -----VLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTL 386 (603)
T ss_pred -----hhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeE
Confidence 333445677788888888888877774 7777777776542111 0
Q ss_pred ceEEeeec--------c---------------------------CCcc--------cccccEEEEeeCCCEEEEEeCCCc
Q 004581 454 GEWIINKR--------Q---------------------------LPRK--------LQFAHSMIFSYDSSQLIIAGHDRR 490 (744)
Q Consensus 454 ~~~~~~~~--------~---------------------------~~~~--------~~~v~~i~~spd~~~l~~~~~dg~ 490 (744)
+..++... + +..+ .-...+++++|+++.+|+|+.|+.
T Consensus 387 ~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgk 466 (603)
T KOG0318|consen 387 RVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGK 466 (603)
T ss_pred EEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccce
Confidence 00000000 0 0000 004568899999999999999999
Q ss_pred EEEEEccCCceee--eeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeE
Q 004581 491 IYVVDVSSSELLH--TFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTA 568 (744)
Q Consensus 491 i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 568 (744)
|+||.+..+.+.. .+.. |.++|+.++||||+.|||+++..+.+.+||+++.+.......+|.+.|.+
T Consensus 467 vhvysl~g~~l~ee~~~~~-----------h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~ 535 (603)
T KOG0318|consen 467 VHVYSLSGDELKEEAKLLE-----------HRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINC 535 (603)
T ss_pred EEEEEecCCcccceeeeec-----------ccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEE
Confidence 9999997655432 2333 89999999999999999999999999999999988866666778999999
Q ss_pred EeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCC
Q 004581 569 AGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 628 (744)
Q Consensus 569 l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspd 628 (744)
++|+| +..++|+|+-|.+|.||+++.-.- .....-.|...|..+.|-.+
T Consensus 536 ~aWsP-~n~~vATGSlDt~Viiysv~kP~~----------~i~iknAH~~gVn~v~wlde 584 (603)
T KOG0318|consen 536 VAWSP-NNKLVATGSLDTNVIIYSVKKPAK----------HIIIKNAHLGGVNSVAWLDE 584 (603)
T ss_pred EEeCC-CceEEEeccccceEEEEEccChhh----------heEeccccccCceeEEEecC
Confidence 99999 999999999999999999986531 12223457777999999765
No 9
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-44 Score=353.44 Aligned_cols=496 Identities=16% Similarity=0.186 Sum_probs=403.7
Q ss_pred CCCCCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCC---CCCCCCcC
Q 004581 1 MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKS---NDSDDHET 77 (744)
Q Consensus 1 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 77 (744)
++|+|..|++..+.|...+-++.....++.+. ...+|.|+.|||||+.+|.+.. +...+|..-+ +...++.+
T Consensus 63 lSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~-fk~~v~~i~fSPng~~fav~~g----n~lqiw~~P~~~~~~~~pFvl 137 (893)
T KOG0291|consen 63 LSPDGTLLLAVDERGRALLVSLLSRSVLHRFN-FKRGVGAIKFSPNGKFFAVGCG----NLLQIWHAPGEIKNEFNPFVL 137 (893)
T ss_pred eCCCceEEEEEcCCCcEEEEecccceeeEEEe-ecCccceEEECCCCcEEEEEec----ceeEEEecCcchhcccCcceE
Confidence 46778888999999999999999988888877 5789999999999999987633 3344443333 34667777
Q ss_pred ccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 004581 78 SESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSW 157 (744)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vw 157 (744)
...........+......+.++|++|+.|-.++||++...+.+. ...+.+|.+.|.++-|..+...|+|.+.||.+.+|
T Consensus 138 ~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~-~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W 216 (893)
T KOG0291|consen 138 HRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLF-TYALNGHKDYVVACFFGANSLDLYTVSKDGALFVW 216 (893)
T ss_pred eeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccc-eEeccCCCcceEEEEeccCcceEEEEecCceEEEE
Confidence 77777788888889999999999999999999999998666643 37889999999999999999999999999999999
Q ss_pred EccC-----------------------Cce-----EEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeC
Q 004581 158 DAKL-----------------------GYE-----IYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDS 208 (744)
Q Consensus 158 d~~~-----------------------~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~ 208 (744)
.... ++. ...... .-........|++.+|++.- .|++|-+.|...++++
T Consensus 217 ~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~--k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~Lyel 294 (893)
T KOG0291|consen 217 TCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTK--KHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYEL 294 (893)
T ss_pred EecCCCcccccccccccccccccccccchhhhcceEEEEEE--eeeecccccceeeeeccCCceEEEEEecCCeeEEEec
Confidence 8751 111 000000 00011234789999999887 8899999999999999
Q ss_pred CCcceEEEeeccccceeEEEEcCCCCEEEeecCC-CeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeee
Q 004581 209 RHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD-GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALT 287 (744)
Q Consensus 209 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 287 (744)
....+++.+.....+|..++|+..|.+|+.|+.. |.+.+|+..... ++...++|...+.+++
T Consensus 295 P~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs-----------------YVlKQQgH~~~i~~l~ 357 (893)
T KOG0291|consen 295 PDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES-----------------YVLKQQGHSDRITSLA 357 (893)
T ss_pred CCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc-----------------eeeeccccccceeeEE
Confidence 9999999999888999999999999999998764 899999998876 3677799999999999
Q ss_pred eeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccc
Q 004581 288 VAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHN 367 (744)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 367 (744)
++ |||+ ++++|+.||.|++||....- |......|...++.
T Consensus 358 YS---------pDgq------------------------~iaTG~eDgKVKvWn~~Sgf-------C~vTFteHts~Vt~ 397 (893)
T KOG0291|consen 358 YS---------PDGQ------------------------LIATGAEDGKVKVWNTQSGF-------CFVTFTEHTSGVTA 397 (893)
T ss_pred EC---------CCCc------------------------EEEeccCCCcEEEEeccCce-------EEEEeccCCCceEE
Confidence 98 7776 99999999999999997632 22334456688999
Q ss_pred eeecCCeEEEEEe--CCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE--cCCceEE
Q 004581 368 TIFSHTSLLLVQY--SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS--DHVKPSL 443 (744)
Q Consensus 368 ~~~s~~~~~l~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~--~~~~v~l 443 (744)
+.|+..+..+.+. +++++.|++..-. ...++..+......|++..|.|.++.+| ..-.|.+
T Consensus 398 v~f~~~g~~llssSLDGtVRAwDlkRYr---------------NfRTft~P~p~QfscvavD~sGelV~AG~~d~F~Ifv 462 (893)
T KOG0291|consen 398 VQFTARGNVLLSSSLDGTVRAWDLKRYR---------------NFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFV 462 (893)
T ss_pred EEEEecCCEEEEeecCCeEEeeeecccc---------------eeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEE
Confidence 9999999888765 6799999988544 5566777777788899999999999886 4457888
Q ss_pred EEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEcc-CCceeeeeccCcccccccCCCCCCc
Q 004581 444 FELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS-SSELLHTFTPCREEHDREIQPSEPP 522 (744)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (744)
|++.+ +..+ ..+.+|..+|.+++|+|++..||+++.|.+|++||+- +...+.++. +...
T Consensus 463 WS~qT---Gqll-----DiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~------------i~sd 522 (893)
T KOG0291|consen 463 WSVQT---GQLL-----DILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE------------IRSD 522 (893)
T ss_pred EEeec---Ceee-----ehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe------------eccc
Confidence 88876 3322 4578899999999999999999999999999999995 334556666 5788
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEec-------------------CCCCceeEEeecCCCCCeEEEEe
Q 004581 523 ITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISR-------------------LEGASVTAAGFPPQNNNVLIITT 583 (744)
Q Consensus 523 i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~-------------------~~~~~v~~l~~sp~~~~~l~~~~ 583 (744)
+..++|+|||+-||++..||.|.+||.+.+.....+.+ ..+...+.+++++ ||+++++|+
T Consensus 523 vl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa-DG~~IlAgG 601 (893)
T KOG0291|consen 523 VLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSA-DGKCILAGG 601 (893)
T ss_pred eeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcC-CCCEEEecC
Confidence 99999999999999999999999999976554432211 1125789999999 999999999
Q ss_pred cCCeEEEEEcCCCc
Q 004581 584 SSNQVYVFDVEAKQ 597 (744)
Q Consensus 584 ~d~~v~vwd~~~~~ 597 (744)
..+.|.+|++.++-
T Consensus 602 ~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 602 ESNSICIYDVPEGV 615 (893)
T ss_pred CcccEEEEECchhh
Confidence 99999999998764
No 10
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.7e-46 Score=362.27 Aligned_cols=442 Identities=15% Similarity=0.173 Sum_probs=364.3
Q ss_pred CeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCC
Q 004581 6 GRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD 85 (744)
Q Consensus 6 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (744)
-+||+|..||.|+||+..+.....++.+|..+|+++.|+..|
T Consensus 78 l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G-------------------------------------- 119 (888)
T KOG0306|consen 78 LLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIG-------------------------------------- 119 (888)
T ss_pred ceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccC--------------------------------------
Confidence 347999999999999999999999999999999999999999
Q ss_pred cccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceE
Q 004581 86 SDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 165 (744)
Q Consensus 86 ~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~ 165 (744)
.+||+|+.|+.|.+||+-....+ ..+.||...|+..-|..+.++|++.|.|+.|++||+++..+.
T Consensus 120 ------------~rlaSGskDt~IIvwDlV~E~Gl---~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf 184 (888)
T KOG0306|consen 120 ------------TRLASGSKDTDIIVWDLVGEEGL---FRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCF 184 (888)
T ss_pred ------------ceEeecCCCccEEEEEeccceee---EEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceee
Confidence 69999999999999999855555 789999999999999998899999999999999999999999
Q ss_pred EEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCC----------------cc--------eEEE-----
Q 004581 166 YRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRH----------------GT--------LLQA----- 216 (744)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~----------------~~--------~~~~----- 216 (744)
.+.- .|.+.+|++++.+ ..+++++.|+.+++|++.. |. .+..
T Consensus 185 ~Thv--------d~r~Eiw~l~~~~-~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s 255 (888)
T KOG0306|consen 185 ETHV--------DHRGEIWALVLDE-KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFS 255 (888)
T ss_pred eEEe--------cccceEEEEEEec-ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCc
Confidence 9888 7999999999998 6889999999999999810 00 0000
Q ss_pred --------------------------------------------------------------------------------
Q 004581 217 -------------------------------------------------------------------------------- 216 (744)
Q Consensus 217 -------------------------------------------------------------------------------- 216 (744)
T Consensus 256 ~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~ 335 (888)
T KOG0306|consen 256 DRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTE 335 (888)
T ss_pred ccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcc
Confidence
Q ss_pred ---------------------------------eeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCc
Q 004581 217 ---------------------------------HSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSS 263 (744)
Q Consensus 217 ---------------------------------~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 263 (744)
+.+|...|.+++++.+...+++| ..+.+++|+..+.+
T Consensus 336 ~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~k--------- 405 (888)
T KOG0306|consen 336 NTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASG-AGESIKIWNRDTLK--------- 405 (888)
T ss_pred eeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeec-CCCcEEEEEccCcc---------
Confidence 34677788888888877655555 45678899888765
Q ss_pred ccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecC
Q 004581 264 SEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCAN 343 (744)
Q Consensus 264 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~ 343 (744)
+++++. ...+.+..|. | +..++++|...|.+.+||+.
T Consensus 406 --------ciRTi~--~~y~l~~~Fv---------p------------------------gd~~Iv~G~k~Gel~vfdla 442 (888)
T KOG0306|consen 406 --------CIRTIT--CGYILASKFV---------P------------------------GDRYIVLGTKNGELQVFDLA 442 (888)
T ss_pred --------eeEEec--cccEEEEEec---------C------------------------CCceEEEeccCCceEEEEee
Confidence 244332 2355566664 3 34499999999999999998
Q ss_pred ccCCCCCcccCCCCCCCccccccceeecCCeEEEEEe--CCeEEEEEeeccCCcccCCCCCCCCC--cceEEEEEecCCC
Q 004581 344 EFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY--SCRLDILSVRLENNVESRSSSGGHAS--TSLLVQVKSKASR 419 (744)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 419 (744)
........ ..|...++.++.+||+..++++ +.++++|+.......+ |.++ .....+....-..
T Consensus 443 S~~l~Eti-------~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~------gt~~k~lsl~~~rtLel~d 509 (888)
T KOG0306|consen 443 SASLVETI-------RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVP------GTQKKVLSLKHTRTLELED 509 (888)
T ss_pred hhhhhhhh-------hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccC------cccceeeeeccceEEeccc
Confidence 75543322 2456889999999998866655 5699999988655321 1100 1111112233347
Q ss_pred CeEEEEEcCCCCEEEEE-cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccC
Q 004581 420 KIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS 498 (744)
Q Consensus 420 ~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~ 498 (744)
.+.|+++||||++||++ -|+++++|-+++ .+++ ..+.+|.-+|.+|.+|||++.+++|+.|.+|+||-++-
T Consensus 510 dvL~v~~Spdgk~LaVsLLdnTVkVyflDt----lKFf----lsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdF 581 (888)
T KOG0306|consen 510 DVLCVSVSPDGKLLAVSLLDNTVKVYFLDT----LKFF----LSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDF 581 (888)
T ss_pred cEEEEEEcCCCcEEEEEeccCeEEEEEecc----eeee----eeecccccceeEEeccCCcCeEEeccCCCceEEecccc
Confidence 89999999999999998 899999999975 2221 56788888999999999999999999999999999999
Q ss_pred CceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCe
Q 004581 499 SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNV 578 (744)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~ 578 (744)
|.+-+.|-+ |...|.++.|-|....+.+++.|+.|+-||-+..+.+..+.++| ..|++++.+| +|.+
T Consensus 582 GDCHKS~fA-----------HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~-~ev~cLav~~-~G~~ 648 (888)
T KOG0306|consen 582 GDCHKSFFA-----------HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHH-SEVWCLAVSP-NGSF 648 (888)
T ss_pred chhhhhhhc-----------ccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccch-heeeeeEEcC-CCCe
Confidence 999999998 99999999999999999999999999999999999999998855 6999999999 9999
Q ss_pred EEEEecCCeEEEEEcCCC
Q 004581 579 LIITTSSNQVYVFDVEAK 596 (744)
Q Consensus 579 l~~~~~d~~v~vwd~~~~ 596 (744)
+++++.|.+|++|.-...
T Consensus 649 vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 649 VVSSSHDKSIRLWERTDE 666 (888)
T ss_pred EEeccCCceeEeeeccCc
Confidence 999999999999986653
No 11
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-42 Score=339.65 Aligned_cols=555 Identities=16% Similarity=0.194 Sum_probs=400.6
Q ss_pred ecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCccccc
Q 004581 11 SSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELH 90 (744)
Q Consensus 11 ~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (744)
....+.|.++|+...+-...--.+...|.++++||+|
T Consensus 31 SPvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g------------------------------------------- 67 (893)
T KOG0291|consen 31 SPVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDG------------------------------------------- 67 (893)
T ss_pred eccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCc-------------------------------------------
Confidence 3456789999998755444333467899999999999
Q ss_pred ccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCce------
Q 004581 91 EQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYE------ 164 (744)
Q Consensus 91 ~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~------ 164 (744)
.+|++..++|...+-++...-.+ +.+. -+.+|.|++|||||+++|.|... .+.||.......
T Consensus 68 -------~lllavdE~g~~~lvs~~~r~Vl---h~f~-fk~~v~~i~fSPng~~fav~~gn-~lqiw~~P~~~~~~~~pF 135 (893)
T KOG0291|consen 68 -------TLLLAVDERGRALLVSLLSRSVL---HRFN-FKRGVGAIKFSPNGKFFAVGCGN-LLQIWHAPGEIKNEFNPF 135 (893)
T ss_pred -------eEEEEEcCCCcEEEEecccceee---EEEe-ecCccceEEECCCCcEEEEEecc-eeEEEecCcchhcccCcc
Confidence 57778888888888888643333 3332 35689999999999999988765 899998643211
Q ss_pred --EEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcce--EEEeeccccceeEEEEcCCCCEEEee
Q 004581 165 --IYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTL--LQAHSFHKGDVNALAAAPSHNRVFST 239 (744)
Q Consensus 165 --~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l~~~ 239 (744)
.+++. +|...|.++.|+.|. .|++|+.|-.+++|+++..+- ...+.+|...|...-|..+...+++.
T Consensus 136 vl~r~~~--------g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tv 207 (893)
T KOG0291|consen 136 VLHRTYL--------GHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTV 207 (893)
T ss_pred eEeeeec--------CCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEE
Confidence 12222 788999999999999 889999999999999987555 57788999999999999999999999
Q ss_pred cCCCeEEEEEcccCcCCCCC------C----CC-----cccccceEEEEee--eeeccCcceeeeeeccCCCCCCCCccc
Q 004581 240 GSDGQVILYKASCESIGPND------G----LS-----SSEVIKKWIYVGS--VRAHTHDVRALTVAVPISREDPLPEDK 302 (744)
Q Consensus 240 ~~dg~i~iw~~~~~~~~~~~------~----~~-----~~~~~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~~~~~~~~ 302 (744)
+.||.+.+|........... + .. .....-.|..... +......|++.++
T Consensus 208 skdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~f-------------- 273 (893)
T KOG0291|consen 208 SKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAF-------------- 273 (893)
T ss_pred ecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeec--------------
Confidence 99999999988733211000 0 00 0001113433321 1223356777777
Q ss_pred ccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCC
Q 004581 303 VKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC 382 (744)
Q Consensus 303 ~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 382 (744)
|++...|++|-..|...+|.+..+..+..... ....|..++|+..|..++.++.
T Consensus 274 -------------------H~~t~~lvvgFssG~f~LyelP~f~lih~LSi-------s~~~I~t~~~N~tGDWiA~g~~ 327 (893)
T KOG0291|consen 274 -------------------HKGTNLLVVGFSSGEFGLYELPDFNLIHSLSI-------SDQKILTVSFNSTGDWIAFGCS 327 (893)
T ss_pred -------------------cCCceEEEEEecCCeeEEEecCCceEEEEeec-------ccceeeEEEecccCCEEEEcCC
Confidence 34555999999999999999988776544432 1256788999999999987754
Q ss_pred ---eEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCCCCceEEe
Q 004581 383 ---RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWII 458 (744)
Q Consensus 383 ---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~~~~~ 458 (744)
.+-+|++..... +.+ ..+|...+.++++||||+++|+| .|++|++|+... +.++
T Consensus 328 klgQLlVweWqsEsY---------------VlK-QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S---gfC~--- 385 (893)
T KOG0291|consen 328 KLGQLLVWEWQSESY---------------VLK-QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS---GFCF--- 385 (893)
T ss_pred ccceEEEEEeeccce---------------eee-ccccccceeeEEECCCCcEEEeccCCCcEEEEeccC---ceEE---
Confidence 899999987652 111 24577899999999999999995 999999999976 6665
Q ss_pred eeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEE
Q 004581 459 NKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV 538 (744)
Q Consensus 459 ~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~ 538 (744)
..+..|...++.+.|+..|+.|++.+-||+|+.||+...+..++|..+ ......+++..|.|..+.+|
T Consensus 386 --vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P----------~p~QfscvavD~sGelV~AG 453 (893)
T KOG0291|consen 386 --VTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP----------EPIQFSCVAVDPSGELVCAG 453 (893)
T ss_pred --EEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCC----------CceeeeEEEEcCCCCEEEee
Confidence 677888899999999999999999999999999999999999999874 34456788888999999999
Q ss_pred eCCC-cEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCcccccccCC
Q 004581 539 NCFG-DVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFP 617 (744)
Q Consensus 539 ~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~ 617 (744)
+.|. .|.||++++|+.+-.+.+ |.++|.+++|+| ++..|++++.|.+|++||+-...-+ ..++ .+.
T Consensus 454 ~~d~F~IfvWS~qTGqllDiLsG-HEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~----------vEtl-~i~ 520 (893)
T KOG0291|consen 454 AQDSFEIFVWSVQTGQLLDILSG-HEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGT----------VETL-EIR 520 (893)
T ss_pred ccceEEEEEEEeecCeeeehhcC-CCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCce----------eeeE-eec
Confidence 8876 699999999999888866 678999999999 9999999999999999998655211 1122 256
Q ss_pred CceEEEEeCCCCCCcEEEEEcCceEEEEeCCCCCCCCccCcccCCCchhhhhhccCCccccccccccccccccccccCCc
Q 004581 618 GEVIGLSFSPSPSSSSVIIYSARAMCVIDFGRPVDPDDETDMVSGQGSALRKIASTPINGRLKRKLRDCQTESNKLHGRK 697 (744)
Q Consensus 618 ~~v~~i~fspdg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 697 (744)
..+.+++|+|||+. ..+..-...+..+|...... +-+.++. +....+ +++... ...+.....+
T Consensus 521 sdvl~vsfrPdG~e-laVaTldgqItf~d~~~~~q------~~~Idgr------kD~~~g-R~~~D~---~ta~~sa~~K 583 (893)
T KOG0291|consen 521 SDVLAVSFRPDGKE-LAVATLDGQITFFDIKEAVQ------VGSIDGR------KDLSGG-RKETDR---ITAENSAKGK 583 (893)
T ss_pred cceeEEEEcCCCCe-EEEEEecceEEEEEhhhcee------eccccch------hhcccc-ccccce---eehhhcccCC
Confidence 78999999999752 22333334566667533110 0000000 001111 111100 0011122334
Q ss_pred ceEEEe--cccceEEeeecCCCeEEEEecChHHHHhcC
Q 004581 698 NFEFFA--FRDPVLFIGHLSKSSMLIIDKPWLEVVKTF 733 (744)
Q Consensus 698 ~~~~~~--~~~~~l~~~~~~~~~l~vve~p~~~~~~~l 733 (744)
.|.-+. ..+.++++|-- .+.+.+..+|-..+++.|
T Consensus 584 ~Ftti~ySaDG~~IlAgG~-sn~iCiY~v~~~vllkkf 620 (893)
T KOG0291|consen 584 TFTTICYSADGKCILAGGE-SNSICIYDVPEGVLLKKF 620 (893)
T ss_pred ceEEEEEcCCCCEEEecCC-cccEEEEECchhheeeeE
Confidence 564333 34777776654 566889998887777665
No 12
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.6e-41 Score=296.20 Aligned_cols=291 Identities=19% Similarity=0.249 Sum_probs=256.9
Q ss_pred ceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEec
Q 004581 26 KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACD 105 (744)
Q Consensus 26 ~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 105 (744)
+..++|++|.+.|.+|.|++|. ++|++++.
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Ds--------------------------------------------------r~ivSaSq 75 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDS--------------------------------------------------RRIVSASQ 75 (343)
T ss_pred eeEEEecccccceeeeEecCCc--------------------------------------------------CeEEeecc
Confidence 3457899999999999999999 69999999
Q ss_pred CCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCC--c----eEEEEEecCCCCCCCC
Q 004581 106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG--Y----EIYRITVGLGGLGSGP 179 (744)
Q Consensus 106 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~--~----~~~~~~~~~~~~~~~~ 179 (744)
||.+.|||.-+..+. +.+.-....|..++|+|.|+++|+|+-|+...||++.+. + ..+.+. +|
T Consensus 76 DGklIvWDs~TtnK~---haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~--------gH 144 (343)
T KOG0286|consen 76 DGKLIVWDSFTTNKV---HAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELA--------GH 144 (343)
T ss_pred CCeEEEEEcccccce---eEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeec--------Cc
Confidence 999999999876665 666777889999999999999999999999999999854 2 223343 79
Q ss_pred ceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcC-CCCEEEeecCCCeEEEEEcccCcCCCC
Q 004581 180 ELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAP-SHNRVFSTGSDGQVILYKASCESIGPN 258 (744)
Q Consensus 180 ~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~ 258 (744)
...+.++.|.+|++|++++.|.+..+||+++|+.+..+.+|.++|.+|.++| +++.+++|+.|+..++||++.+.
T Consensus 145 tgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~---- 220 (343)
T KOG0286|consen 145 TGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ---- 220 (343)
T ss_pred cceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc----
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999987
Q ss_pred CCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEE
Q 004581 259 DGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLF 338 (744)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~ 338 (744)
+.+.+.+|..+|.++.|. |+| .-+++|+.|++.+
T Consensus 221 -------------c~qtF~ghesDINsv~ff---------P~G------------------------~afatGSDD~tcR 254 (343)
T KOG0286|consen 221 -------------CVQTFEGHESDINSVRFF---------PSG------------------------DAFATGSDDATCR 254 (343)
T ss_pred -------------eeEeecccccccceEEEc---------cCC------------------------CeeeecCCCceeE
Confidence 588999999999999995 444 4999999999999
Q ss_pred EEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCC
Q 004581 339 AYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKAS 418 (744)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (744)
+||++....+
T Consensus 255 lyDlRaD~~~---------------------------------------------------------------------- 264 (343)
T KOG0286|consen 255 LYDLRADQEL---------------------------------------------------------------------- 264 (343)
T ss_pred EEeecCCcEE----------------------------------------------------------------------
Confidence 9999752210
Q ss_pred CCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccC
Q 004581 419 RKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS 498 (744)
Q Consensus 419 ~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~ 498 (744)
.+|.- .....+|++++||..|++|++|..|.++.+||.-.
T Consensus 265 -----------------------a~ys~-----------------~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk 304 (343)
T KOG0286|consen 265 -----------------------AVYSH-----------------DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLK 304 (343)
T ss_pred -----------------------eeecc-----------------CcccCCceeEEEcccccEEEeeecCCceeEeeccc
Confidence 00000 00112799999999999999999999999999989
Q ss_pred CceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEE
Q 004581 499 SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFN 548 (744)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd 548 (744)
++.+..+.+ |...|+++..+|||.-+++|+.|..++||.
T Consensus 305 ~e~vg~L~G-----------HeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 305 GERVGVLAG-----------HENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cceEEEeec-----------cCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999 999999999999999999999999999994
No 13
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.1e-43 Score=322.44 Aligned_cols=274 Identities=19% Similarity=0.261 Sum_probs=246.1
Q ss_pred CCCCCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccC
Q 004581 1 MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSES 80 (744)
Q Consensus 1 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (744)
++..+..|+||+-+|.+.+|+..++..+++|.+|...|.++.|+|....
T Consensus 183 fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~------------------------------- 231 (459)
T KOG0272|consen 183 FSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSD------------------------------- 231 (459)
T ss_pred eecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCc-------------------------------
Confidence 3567888999999999999999999999999999999999999998411
Q ss_pred CCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 004581 81 ENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAK 160 (744)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~ 160 (744)
..||+|+.||++++|++.+...+ ..|.+|..+|..++|+|+|++|+|+|.|.+-++||++
T Consensus 232 -----------------~~lat~s~Dgtvklw~~~~e~~l---~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~ 291 (459)
T KOG0272|consen 232 -----------------LNLATASADGTVKLWKLSQETPL---QDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLE 291 (459)
T ss_pred -----------------cceeeeccCCceeeeccCCCcch---hhhhcchhhheeeeecCCCceeeecccccchhhcccc
Confidence 48999999999999999866666 8999999999999999999999999999999999999
Q ss_pred CCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEee
Q 004581 161 LGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFST 239 (744)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~ 239 (744)
++..+.... +|...|.+++|.+|| .+++|+.|..-+|||+++|+++..+.+|..+|.+++|+|+|..|+||
T Consensus 292 tk~ElL~QE--------GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATg 363 (459)
T KOG0272|consen 292 TKSELLLQE--------GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATG 363 (459)
T ss_pred cchhhHhhc--------ccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeec
Confidence 998887776 899999999999999 88999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccc
Q 004581 240 GSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHK 319 (744)
Q Consensus 240 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (744)
+.|+++++||++.... +..+.+|++-|..+.++ |.
T Consensus 364 s~Dnt~kVWDLR~r~~-----------------ly~ipAH~nlVS~Vk~~---------p~------------------- 398 (459)
T KOG0272|consen 364 SSDNTCKVWDLRMRSE-----------------LYTIPAHSNLVSQVKYS---------PQ------------------- 398 (459)
T ss_pred CCCCcEEEeeeccccc-----------------ceecccccchhhheEec---------cc-------------------
Confidence 9999999999998763 77889999999999997 31
Q ss_pred cccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCC
Q 004581 320 WAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRS 399 (744)
Q Consensus 320 w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~ 399 (744)
.+.+|++++.|+++++|...+.....
T Consensus 399 ----~g~fL~TasyD~t~kiWs~~~~~~~k-------------------------------------------------- 424 (459)
T KOG0272|consen 399 ----EGYFLVTASYDNTVKIWSTRTWSPLK-------------------------------------------------- 424 (459)
T ss_pred ----CCeEEEEcccCcceeeecCCCcccch--------------------------------------------------
Confidence 23499999999999999887644221
Q ss_pred CCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCceEEEE
Q 004581 400 SSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFE 445 (744)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~v~l~~ 445 (744)
.-.+|...|.++.+++|++++++ +.|.++++|.
T Consensus 425 -------------sLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 425 -------------SLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred -------------hhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 11356788999999999999998 5888998885
No 14
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.3e-42 Score=318.26 Aligned_cols=267 Identities=15% Similarity=0.205 Sum_probs=244.6
Q ss_pred CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecC--CCEEEEEeCCCeEEEEEccCCceEEEEEecCCCC
Q 004581 98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSAD--GNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGL 175 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~d--g~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 175 (744)
..||+|+.+|.+++|+..+...+ .+|.+|...|.++.|+|. +..||||+.||++++|++.+...+..+.
T Consensus 188 ~~laT~swsG~~kvW~~~~~~~~---~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~------ 258 (459)
T KOG0272|consen 188 KHLATGSWSGLVKVWSVPQCNLL---QTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLE------ 258 (459)
T ss_pred CeEEEeecCCceeEeecCCccee---EEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhh------
Confidence 69999999999999999866544 899999999999999997 5689999999999999999889999988
Q ss_pred CCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCc
Q 004581 176 GSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 254 (744)
Q Consensus 176 ~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~ 254 (744)
+|...|..++|+|+| +|++++.|.+-++||+++++.+....+|...|.+++|.+||..+++||.|..-++||++++.
T Consensus 259 --gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr 336 (459)
T KOG0272|consen 259 --GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR 336 (459)
T ss_pred --cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCc
Confidence 799999999999999 89999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCC
Q 004581 255 IGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD 334 (744)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d 334 (744)
++..+.+|...|.+++|+ |+|. .|++|+.|
T Consensus 337 -----------------~im~L~gH~k~I~~V~fs---------PNGy------------------------~lATgs~D 366 (459)
T KOG0272|consen 337 -----------------CIMFLAGHIKEILSVAFS---------PNGY------------------------HLATGSSD 366 (459)
T ss_pred -----------------EEEEecccccceeeEeEC---------CCce------------------------EEeecCCC
Confidence 478889999999999997 6665 89999999
Q ss_pred CeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEE
Q 004581 335 TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK 414 (744)
Q Consensus 335 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (744)
+++++||++....
T Consensus 367 nt~kVWDLR~r~~------------------------------------------------------------------- 379 (459)
T KOG0272|consen 367 NTCKVWDLRMRSE------------------------------------------------------------------- 379 (459)
T ss_pred CcEEEeeeccccc-------------------------------------------------------------------
Confidence 9999999874110
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEee-CCCEEEEEeCCCcEEE
Q 004581 415 SKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY-DSSQLIIAGHDRRIYV 493 (744)
Q Consensus 415 ~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-d~~~l~~~~~dg~i~v 493 (744)
+ ..++.|..-|+.+.|+| .|.+|++++.|++++|
T Consensus 380 ----------------------------------------l-----y~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~ki 414 (459)
T KOG0272|consen 380 ----------------------------------------L-----YTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKI 414 (459)
T ss_pred ----------------------------------------c-----eecccccchhhheEecccCCeEEEEcccCcceee
Confidence 1 33556666888999998 7899999999999999
Q ss_pred EEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEE
Q 004581 494 VDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFN 548 (744)
Q Consensus 494 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd 548 (744)
|...++++++++.+ |.+.|.++.+++|++++++++.|.++++|.
T Consensus 415 Ws~~~~~~~ksLaG-----------He~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 415 WSTRTWSPLKSLAG-----------HEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ecCCCcccchhhcC-----------CccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999999 999999999999999999999999999995
No 15
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=4.3e-38 Score=312.70 Aligned_cols=492 Identities=14% Similarity=0.180 Sum_probs=378.2
Q ss_pred CCeeEEecCCCeEEEEEccCC-ce----eEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCcc
Q 004581 5 GGRLFSSSIDGSVSEWDLYDL-KQ----KIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSE 79 (744)
Q Consensus 5 ~~~l~~~~~d~~i~iwd~~~~-~~----~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (744)
|..|+++..++.+.+|+..++ .. ...++.....|+++ ++|+ +|+
T Consensus 124 Ge~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~-TYL----------------------------- 172 (910)
T KOG1539|consen 124 GEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPS-TYL----------------------------- 172 (910)
T ss_pred cceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecch-hhe-----------------------------
Confidence 677888899999999998874 11 11223223336665 5665 466
Q ss_pred CCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 004581 80 SENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDA 159 (744)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~ 159 (744)
+.++.|+.+|.+.||++.+++.+ .+++++...|+++.=+|-=+.+|.|..+|+|.++++
T Consensus 173 ------------------NKIvvGs~~G~lql~Nvrt~K~v---~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNl 231 (910)
T KOG1539|consen 173 ------------------NKIVVGSSQGRLQLWNVRTGKVV---YTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNL 231 (910)
T ss_pred ------------------eeEEEeecCCcEEEEEeccCcEE---EEecccccceeEeccCCcceEEEEeccCceEEEEEc
Confidence 68999999999999999988888 899999999999999999999999999999999999
Q ss_pred cCCceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcceEEEee-ccccceeEEEEcCCCCEE
Q 004581 160 KLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHS-FHKGDVNALAAAPSHNRV 236 (744)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l 236 (744)
+.++.+..++ ...+.|++++|..|| .+++|+..|.+-+||++..+.+..+. .|.+.|..+.|.|....+
T Consensus 232 K~dkil~sFk--------~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl 303 (910)
T KOG1539|consen 232 KFDKILMSFK--------QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVL 303 (910)
T ss_pred ccCcEEEEEE--------ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceE
Confidence 9999999998 235999999999999 78999999999999999877776655 898999999999999999
Q ss_pred EeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcccc
Q 004581 237 FSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFS 316 (744)
Q Consensus 237 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (744)
++++.|+.+++|-.+++... -+.++...+|+.+-.++.|.
T Consensus 304 ~ta~~DnSlk~~vfD~~dg~-------------pR~LR~R~GHs~Pp~~irfy--------------------------- 343 (910)
T KOG1539|consen 304 VTAGADNSLKVWVFDSGDGV-------------PRLLRSRGGHSAPPSCIRFY--------------------------- 343 (910)
T ss_pred eeccCCCceeEEEeeCCCCc-------------chheeeccCCCCCchheeee---------------------------
Confidence 99999999999987765421 23477888999999999985
Q ss_pred ccccccCCCcEEEEecCCCeEEEEecCccCCCCCccc----------CC-CCCCCccccccceeecCCe-----EEEEEe
Q 004581 317 YHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEI----------CP-APQRVPIHLVHNTIFSHTS-----LLLVQY 380 (744)
Q Consensus 317 ~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~----------~~-~~~~~~~~~v~~~~~s~~~-----~~l~~~ 380 (744)
...+..+.+++.|++++.+++.....-+.... .. .........+..+++.... ..++..
T Consensus 344 -----~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h 418 (910)
T KOG1539|consen 344 -----GSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAH 418 (910)
T ss_pred -----ccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEe
Confidence 22344899999999999998754221111100 00 0111122344444444322 233443
Q ss_pred CC--eEEEEEeeccCCcccCCCCCCCCCcceEEEEE--ecCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCCCCce
Q 004581 381 SC--RLDILSVRLENNVESRSSSGGHASTSLLVQVK--SKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGE 455 (744)
Q Consensus 381 ~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~~ 455 (744)
-+ ....|++....... ....-. .+....++++++++.|++...| +.|.|-+|++.. ++..
T Consensus 419 ~~~~~~~tW~~~n~~~G~------------~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS---Gi~r 483 (910)
T KOG1539|consen 419 KGKRSAYTWNFRNKTSGR------------HVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS---GIHR 483 (910)
T ss_pred cCcceEEEEeccCccccc------------EEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEccc---Ceee
Confidence 33 67777776544210 110000 1134778999999999999886 889999999986 3321
Q ss_pred EEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEE
Q 004581 456 WIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWL 535 (744)
Q Consensus 456 ~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l 535 (744)
-.-..-+.|..+|+.++...-++.+++++.+|.+.+||.....++..+.- ...++.+..+.....+
T Consensus 484 --~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l------------~~~~~~iv~hr~s~l~ 549 (910)
T KOG1539|consen 484 --KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL------------GSSITGIVYHRVSDLL 549 (910)
T ss_pred --cccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc------------CCCcceeeeeehhhhh
Confidence 00022357778999999988899999999999999999998888888874 7788999999999999
Q ss_pred EEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCccccccc
Q 004581 536 AAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQE 615 (744)
Q Consensus 536 as~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~ 615 (744)
|.+..|=.|+++|..+.+....+.+ |+..|++++||| ||++|++++.|++|++||+.++.+.+ ...
T Consensus 550 a~~~ddf~I~vvD~~t~kvvR~f~g-h~nritd~~FS~-DgrWlisasmD~tIr~wDlpt~~lID------------~~~ 615 (910)
T KOG1539|consen 550 AIALDDFSIRVVDVVTRKVVREFWG-HGNRITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLID------------GLL 615 (910)
T ss_pred hhhcCceeEEEEEchhhhhhHHhhc-cccceeeeEeCC-CCcEEEEeecCCcEEEEeccCcceee------------eEe
Confidence 9999999999999999888777765 778999999999 99999999999999999999998644 223
Q ss_pred CCCceEEEEeCCCCC--------CcEEEEEcCceEEE
Q 004581 616 FPGEVIGLSFSPSPS--------SSSVIIYSARAMCV 644 (744)
Q Consensus 616 ~~~~v~~i~fspdg~--------~~~~~~~~~~~~~~ 644 (744)
.+.++..+.|||.|. .+-+++|....++.
T Consensus 616 vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNkslF~ 652 (910)
T KOG1539|consen 616 VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSLFK 652 (910)
T ss_pred cCCcceeeEECCCCCEEEEEEecCceEEEEEchhHhe
Confidence 568999999999875 23455555555443
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.1e-39 Score=278.08 Aligned_cols=298 Identities=20% Similarity=0.213 Sum_probs=247.8
Q ss_pred CceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEe
Q 004581 25 LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC 104 (744)
Q Consensus 25 ~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 104 (744)
.....++++|.+.|..++..+.+. +.+.+++
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~-------------------------------------------------~~l~sas 35 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNS-------------------------------------------------DILVSAS 35 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCC-------------------------------------------------ceEEEcc
Confidence 345568999999999999999863 5899999
Q ss_pred cCCeEEEEEecCCCce--eEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCcee
Q 004581 105 DDGCVRIYRITDSDEL--IYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELC 182 (744)
Q Consensus 105 ~dg~i~iwd~~~~~~~--~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 182 (744)
.|..+.+|++...... ...+.+.||...|..++.++||++.++++.|+++++||+.+|+..++|. +|...
T Consensus 36 rDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~--------GH~~d 107 (315)
T KOG0279|consen 36 RDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFV--------GHTKD 107 (315)
T ss_pred cceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEE--------ecCCc
Confidence 9999999999743211 1248899999999999999999999999999999999999999999998 79999
Q ss_pred EEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeecc--ccceeEEEEcCC--CCEEEeecCCCeEEEEEcccCcCCC
Q 004581 183 IWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFH--KGDVNALAAAPS--HNRVFSTGSDGQVILYKASCESIGP 257 (744)
Q Consensus 183 v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~ 257 (744)
|.+++|++|+ ++++|+.|.+|++||.. |.+..++..+ ...|.|++|+|+ ..+|++++.|++|++||+++.+.
T Consensus 108 Vlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l-- 184 (315)
T KOG0279|consen 108 VLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL-- 184 (315)
T ss_pred eEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch--
Confidence 9999999999 99999999999999998 6666666554 688999999998 68999999999999999998763
Q ss_pred CCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeE
Q 004581 258 NDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKL 337 (744)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i 337 (744)
...+.+|++.++.++++ |||. +.++|+.||.+
T Consensus 185 ---------------~~~~~gh~~~v~t~~vS---------pDGs------------------------lcasGgkdg~~ 216 (315)
T KOG0279|consen 185 ---------------RTTFIGHSGYVNTVTVS---------PDGS------------------------LCASGGKDGEA 216 (315)
T ss_pred ---------------hhccccccccEEEEEEC---------CCCC------------------------EEecCCCCceE
Confidence 56778999999999998 7776 99999999999
Q ss_pred EEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecC
Q 004581 338 FAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKA 417 (744)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (744)
.+||++..+. ++. ..+
T Consensus 217 ~LwdL~~~k~--------------------------------------------------------------lys--l~a 232 (315)
T KOG0279|consen 217 MLWDLNEGKN--------------------------------------------------------------LYS--LEA 232 (315)
T ss_pred EEEEccCCce--------------------------------------------------------------eEe--ccC
Confidence 9999986442 111 234
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeee----ccCCcccccccEEEEeeCCCEEEEEeCCCcEEE
Q 004581 418 SRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINK----RQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYV 493 (744)
Q Consensus 418 ~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v 493 (744)
...|.+++|+|+.-+|+.+.+..|+||++.. ...+.+++- ...........+++||+||..|++|..|+.|++
T Consensus 233 ~~~v~sl~fspnrywL~~at~~sIkIwdl~~---~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv 309 (315)
T KOG0279|consen 233 FDIVNSLCFSPNRYWLCAATATSIKIWDLES---KAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRV 309 (315)
T ss_pred CCeEeeEEecCCceeEeeccCCceEEEeccc---hhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEE
Confidence 4778999999999999998888899999976 222211111 111111235667899999999999999999999
Q ss_pred EEcc
Q 004581 494 VDVS 497 (744)
Q Consensus 494 ~d~~ 497 (744)
|.+.
T Consensus 310 ~qv~ 313 (315)
T KOG0279|consen 310 WQVA 313 (315)
T ss_pred EEee
Confidence 9874
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.8e-39 Score=272.48 Aligned_cols=295 Identities=15% Similarity=0.147 Sum_probs=247.0
Q ss_pred CEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcc--eEEEeecc
Q 004581 143 NMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGT--LLQAHSFH 220 (744)
Q Consensus 143 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~h 220 (744)
-+|++++.|.+||+|...+|.+.+++. ..+..|..+...|++..+++.....|++||++++. ++.++.+|
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiq--------h~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h 82 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQ--------HPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGH 82 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEe--------cCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEecc
Confidence 479999999999999999999999998 57789999999999955555557789999999864 58999999
Q ss_pred ccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCc
Q 004581 221 KGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE 300 (744)
Q Consensus 221 ~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~ 300 (744)
...|+++.|..+|+.+++|+.||+++|||++... ......|..+|.++.+.
T Consensus 83 ~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~------------------~qR~~~~~spVn~vvlh----------- 133 (311)
T KOG0315|consen 83 TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS------------------CQRNYQHNSPVNTVVLH----------- 133 (311)
T ss_pred CCceEEEEEeecCeEEEecCCCceEEEEeccCcc------------------cchhccCCCCcceEEec-----------
Confidence 9999999999999999999999999999999855 34456677999999985
Q ss_pred ccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEe
Q 004581 301 DKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY 380 (744)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 380 (744)
|+...|++|..+|.|++||+.+..-
T Consensus 134 ----------------------pnQteLis~dqsg~irvWDl~~~~c--------------------------------- 158 (311)
T KOG0315|consen 134 ----------------------PNQTELISGDQSGNIRVWDLGENSC--------------------------------- 158 (311)
T ss_pred ----------------------CCcceEEeecCCCcEEEEEccCCcc---------------------------------
Confidence 3444899999999999999976321
Q ss_pred CCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCCCCceEEee
Q 004581 381 SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIIN 459 (744)
Q Consensus 381 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~~~~~~ 459 (744)
..++.......+.++++.|||++++.+ ..|..++|++-.......+ ..
T Consensus 159 -----------------------------~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l--~P 207 (311)
T KOG0315|consen 159 -----------------------------THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASEL--EP 207 (311)
T ss_pred -----------------------------ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccc--eE
Confidence 111111223668899999999998885 8899999999873333333 33
Q ss_pred eccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCC-ceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEE
Q 004581 460 KRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSS-ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV 538 (744)
Q Consensus 460 ~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~ 538 (744)
..+++.|...+..+.+|||+++||+++.|.+++||+.++. +...++++ |...+...+||.||+||++|
T Consensus 208 ~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~g-----------h~rWvWdc~FS~dg~YlvTa 276 (311)
T KOG0315|consen 208 VHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTG-----------HQRWVWDCAFSADGEYLVTA 276 (311)
T ss_pred hhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeec-----------CCceEEeeeeccCccEEEec
Confidence 3567788889999999999999999999999999999887 67777888 89999999999999999999
Q ss_pred eCCCcEEEEECCCcceEEEEecCCCCceeEEeec
Q 004581 539 NCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFP 572 (744)
Q Consensus 539 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~s 572 (744)
+.|+.+++|++..++......++|. ...+++..
T Consensus 277 ssd~~~rlW~~~~~k~v~qy~gh~K-~~vc~~ln 309 (311)
T KOG0315|consen 277 SSDHTARLWDLSAGKEVRQYQGHHK-AAVCVALN 309 (311)
T ss_pred CCCCceeecccccCceeeecCCccc-ccEEEEee
Confidence 9999999999999998888877664 55566553
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2e-38 Score=275.31 Aligned_cols=293 Identities=18% Similarity=0.257 Sum_probs=246.4
Q ss_pred ceeEeecccCccCcEEEEEEecC-CCEEEEEeCCCeEEEEEccC-----CceEEEEEecCCCCCCCCceeEEEEEEecCC
Q 004581 119 ELIYHRSLPRVSGRVLSVTWSAD-GNMLYSGSSDGYIRSWDAKL-----GYEIYRITVGLGGLGSGPELCIWSLLSLRCG 192 (744)
Q Consensus 119 ~~~~~~~~~~h~~~V~~~~~s~d-g~~l~t~~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 192 (744)
.+....++++|.+.|+.++..+. .+.|++++.|.++.+|++.. |..+++++ +|...|..+..++||
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~--------GHsH~v~dv~~s~dg 75 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT--------GHSHFVSDVVLSSDG 75 (315)
T ss_pred hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeee--------ccceEecceEEccCC
Confidence 34455789999999999999987 56888999999999998754 67778887 899999999999999
Q ss_pred -eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEE
Q 004581 193 -TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWI 271 (744)
Q Consensus 193 -~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 271 (744)
+.++++.|+++++||+.+|+..+.|.+|...|.+++|++|.+.+++|+.|.+|++|+.....
T Consensus 76 ~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c----------------- 138 (315)
T KOG0279|consen 76 NFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC----------------- 138 (315)
T ss_pred ceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE-----------------
Confidence 89999999999999999999999999999999999999999999999999999999998764
Q ss_pred EEeeeee--ccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCC
Q 004581 272 YVGSVRA--HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFS 349 (744)
Q Consensus 272 ~~~~~~~--h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~ 349 (744)
..++.. +..-|.++.|+ |+. ..++|++++.|+++++||+++.+..
T Consensus 139 -k~t~~~~~~~~WVscvrfs---------P~~----------------------~~p~Ivs~s~DktvKvWnl~~~~l~- 185 (315)
T KOG0279|consen 139 -KYTIHEDSHREWVSCVRFS---------PNE----------------------SNPIIVSASWDKTVKVWNLRNCQLR- 185 (315)
T ss_pred -EEEEecCCCcCcEEEEEEc---------CCC----------------------CCcEEEEccCCceEEEEccCCcchh-
Confidence 233332 36778999997 332 1348999999999999988753210
Q ss_pred CcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCC
Q 004581 350 PHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNS 429 (744)
Q Consensus 350 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 429 (744)
T Consensus 186 -------------------------------------------------------------------------------- 185 (315)
T KOG0279|consen 186 -------------------------------------------------------------------------------- 185 (315)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCc
Q 004581 430 GMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCR 509 (744)
Q Consensus 430 g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 509 (744)
..+.+|...++.+++||||..+++|+.||.+.+||+..++.++++.
T Consensus 186 -------------------------------~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~--- 231 (315)
T KOG0279|consen 186 -------------------------------TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE--- 231 (315)
T ss_pred -------------------------------hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc---
Confidence 3344566688999999999999999999999999999999999998
Q ss_pred ccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCC--------CCceeEEeecCCCCCeEEE
Q 004581 510 EEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLE--------GASVTAAGFPPQNNNVLII 581 (744)
Q Consensus 510 ~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~--------~~~v~~l~~sp~~~~~l~~ 581 (744)
|...|.+++|+|+.-+|+.+... .|+|||+++...+..+.... ...-.+++|++ ||..|+.
T Consensus 232 ---------a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~-dG~tLf~ 300 (315)
T KOG0279|consen 232 ---------AFDIVNSLCFSPNRYWLCAATAT-SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA-DGQTLFA 300 (315)
T ss_pred ---------CCCeEeeEEecCCceeEeeccCC-ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcC-CCcEEEe
Confidence 58999999999998888777544 49999999887765543211 12346789999 9999999
Q ss_pred EecCCeEEEEEcC
Q 004581 582 TTSSNQVYVFDVE 594 (744)
Q Consensus 582 ~~~d~~v~vwd~~ 594 (744)
+..|+.|++|.+.
T Consensus 301 g~td~~irv~qv~ 313 (315)
T KOG0279|consen 301 GYTDNVIRVWQVA 313 (315)
T ss_pred eecCCcEEEEEee
Confidence 9999999999875
No 19
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=6.6e-38 Score=273.69 Aligned_cols=290 Identities=14% Similarity=0.167 Sum_probs=256.1
Q ss_pred EeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCC
Q 004581 122 YHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADST 200 (744)
Q Consensus 122 ~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~d 200 (744)
..++|++|.+.|.++.|++|+++|++++.||.+.|||.-+....+.++ -....|..++|+|.| .+++|+-|
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haip--------l~s~WVMtCA~sPSg~~VAcGGLd 118 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIP--------LPSSWVMTCAYSPSGNFVACGGLD 118 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEe--------cCceeEEEEEECCCCCeEEecCcC
Confidence 338899999999999999999999999999999999999998888888 367899999999999 88999999
Q ss_pred CCEEEEeCCCc------ceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEe
Q 004581 201 GSVQFWDSRHG------TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVG 274 (744)
Q Consensus 201 g~i~vwd~~~~------~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (744)
+...||++.+. ...+.+.+|++-+.|+.|.+|+ .|++++.|.+..+||+++++ .+.
T Consensus 119 N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~-----------------~~~ 180 (343)
T KOG0286|consen 119 NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQ-----------------QTQ 180 (343)
T ss_pred ceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccce-----------------EEE
Confidence 99999999854 3456789999999999999865 69999999999999999988 478
Q ss_pred eeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccC
Q 004581 275 SVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEIC 354 (744)
Q Consensus 275 ~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~ 354 (744)
.+.+|+.+|.++.++ |. +.+.+++|+-|+..++||++...
T Consensus 181 ~f~GH~gDV~slsl~---------p~-----------------------~~ntFvSg~cD~~aklWD~R~~~-------- 220 (343)
T KOG0286|consen 181 VFHGHTGDVMSLSLS---------PS-----------------------DGNTFVSGGCDKSAKLWDVRSGQ-------- 220 (343)
T ss_pred EecCCcccEEEEecC---------CC-----------------------CCCeEEecccccceeeeeccCcc--------
Confidence 899999999999996 31 22489999999999999987411
Q ss_pred CCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEE
Q 004581 355 PAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFA 434 (744)
Q Consensus 355 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la 434 (744)
T Consensus 221 -------------------------------------------------------------------------------- 220 (343)
T KOG0286|consen 221 -------------------------------------------------------------------------------- 220 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccc
Q 004581 435 YSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDR 514 (744)
Q Consensus 435 ~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~ 514 (744)
. .+.+++|...|+++.|.|+|.-+++|+.|+++++||+...+.+..+....
T Consensus 221 -------------------c-----~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~----- 271 (343)
T KOG0286|consen 221 -------------------C-----VQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDS----- 271 (343)
T ss_pred -------------------e-----eEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCc-----
Confidence 1 14456677789999999999999999999999999999888888887522
Q ss_pred cCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEE
Q 004581 515 EIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFD 592 (744)
Q Consensus 515 ~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd 592 (744)
...+|++++||..|++|.+|..|.++.+||.-.++....+.+ |...|.++..+| ||.-|++++.|.+++||.
T Consensus 272 ----~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~G-HeNRvScl~~s~-DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 272 ----IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAG-HENRVSCLGVSP-DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ----ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeec-cCCeeEEEEECC-CCcEEEecchhHheeecC
Confidence 367899999999999999999999999999998888877865 778999999999 999999999999999994
No 20
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-37 Score=297.31 Aligned_cols=436 Identities=11% Similarity=0.151 Sum_probs=325.8
Q ss_pred CCCCCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccC
Q 004581 1 MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSES 80 (744)
Q Consensus 1 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (744)
|+|-..+++++=.+|.|.|||.+|...++.+.-...+|.+..|-+..
T Consensus 21 ~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRk--------------------------------- 67 (794)
T KOG0276|consen 21 FHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARK--------------------------------- 67 (794)
T ss_pred cCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeecc---------------------------------
Confidence 56777888899999999999999999999999999999999998877
Q ss_pred CCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 004581 81 ENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAK 160 (744)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~ 160 (744)
+++++|++|..|+||+..+.+.+ +.|.+|..-|.|++.+|...+++|++.|-+|++||.+
T Consensus 68 -----------------nWiv~GsDD~~IrVfnynt~ekV---~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we 127 (794)
T KOG0276|consen 68 -----------------NWIVTGSDDMQIRVFNYNTGEKV---KTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE 127 (794)
T ss_pred -----------------ceEEEecCCceEEEEecccceee---EEeeccccceeeeeecCCCCeEEecCCccEEEEeecc
Confidence 69999999999999999988888 8999999999999999999999999999999999997
Q ss_pred CC-ceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCC--CE
Q 004581 161 LG-YEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSH--NR 235 (744)
Q Consensus 161 ~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~--~~ 235 (744)
.+ .+.+.+. +|...|.+++|.|.. ++++++-|++|+||.+.+..+..++++|...|+|+.|-+-| .+
T Consensus 128 ~~wa~~qtfe--------GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpy 199 (794)
T KOG0276|consen 128 NEWACEQTFE--------GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPY 199 (794)
T ss_pred CceeeeeEEc--------CcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcce
Confidence 65 5566666 899999999999976 89999999999999999999999999999999999998754 79
Q ss_pred EEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccc
Q 004581 236 VFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDF 315 (744)
Q Consensus 236 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (744)
|++|+.|.++++||..+.. |++++.+|++.|..+.|.
T Consensus 200 lIsgaDD~tiKvWDyQtk~-----------------CV~TLeGHt~Nvs~v~fh-------------------------- 236 (794)
T KOG0276|consen 200 LISGADDLTIKVWDYQTKS-----------------CVQTLEGHTNNVSFVFFH-------------------------- 236 (794)
T ss_pred EEecCCCceEEEeecchHH-----------------HHHHhhcccccceEEEec--------------------------
Confidence 9999999999999999987 488999999999999994
Q ss_pred cccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecC-----------------------
Q 004581 316 SYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSH----------------------- 372 (744)
Q Consensus 316 ~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----------------------- 372 (744)
|..+.+++|+.||++++|+..+.+....... -...+++++..+
T Consensus 237 -------p~lpiiisgsEDGTvriWhs~Ty~lE~tLn~-------gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP 302 (794)
T KOG0276|consen 237 -------PELPIIISGSEDGTVRIWNSKTYKLEKTLNY-------GLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEP 302 (794)
T ss_pred -------CCCcEEEEecCCccEEEecCcceehhhhhhc-------CCceEEEEeecCCCCeEEEeccCCcEEEEccCCCC
Confidence 4455999999999999999987654432221 113444444433
Q ss_pred ------CeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEe
Q 004581 373 ------TSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFEL 446 (744)
Q Consensus 373 ------~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~ 446 (744)
.|+++.+..+.+.--++.+-.... ....|..-+-.+..+- .-.-....++.||+|++++++.||.-.||..
T Consensus 303 ~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~--ev~DgErL~LsvKeLg-s~eiyPq~L~hsPNGrfV~VcgdGEyiIyTa 379 (794)
T KOG0276|consen 303 AVSMDSNGKIIWAVHSEIQAVNLKSVGAQK--EVTDGERLPLSVKELG-SVEIYPQTLAHSPNGRFVVVCGDGEYIIYTA 379 (794)
T ss_pred ceeecCCccEEEEcCceeeeeeceeccCcc--cccCCccccchhhhcc-ccccchHHhccCCCCcEEEEecCccEEEEEe
Confidence 333333322222111111111000 0000110000000000 0012234678899999999999999999874
Q ss_pred ecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEE
Q 004581 447 KKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKM 526 (744)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 526 (744)
-. | . . ...+......|++|.+..++-..++.|.++ ++++..+.+.. ....-.+
T Consensus 380 la-------~--R-n---K~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~~------------~~~~e~i 432 (794)
T KOG0276|consen 380 LA-------L--R-N---KAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIRP------------DMSAEGI 432 (794)
T ss_pred ee-------h--h-h---cccccceeEEEcCCCCeEEEEecCCceEEE--ecceecccccc------------ccceeee
Confidence 32 1 1 1 123356678899998888888888999999 67777777664 1111111
Q ss_pred EECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcC
Q 004581 527 FTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVE 594 (744)
Q Consensus 527 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~ 594 (744)
-.|.+|... .++.+++||.+++..+..+.. .+..+.|+. +|.+++.++.|. .+++.++
T Consensus 433 ---~gg~Llg~~-ss~~~~fydW~~~~lVrrI~v----~~k~v~w~d-~g~lVai~~d~S-fyil~~n 490 (794)
T KOG0276|consen 433 ---FGGPLLGVR-SSDFLCFYDWESGELVRRIEV----TSKHVYWSD-NGELVAIAGDDS-FYILKFN 490 (794)
T ss_pred ---cCCceEEEE-eCCeEEEEEcccceEEEEEee----ccceeEEec-CCCEEEEEecCc-eeEEEec
Confidence 134455555 456699999999998877753 456789998 888877777654 5555543
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2e-38 Score=270.27 Aligned_cols=295 Identities=17% Similarity=0.277 Sum_probs=238.2
Q ss_pred eeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCc
Q 004581 7 RLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDS 86 (744)
Q Consensus 7 ~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (744)
.|+++|.|.+|++|...+|++.++++-....|..+.+.||+
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk--------------------------------------- 52 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDK--------------------------------------- 52 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCc---------------------------------------
Confidence 59999999999999999999999999878999999999999
Q ss_pred ccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEE
Q 004581 87 DELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIY 166 (744)
Q Consensus 87 ~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~ 166 (744)
+.||+++. ..||+||+.++... ...++.+|...|+++.|..||++++||++||+++|||++...+.+
T Consensus 53 -----------~~LAaa~~-qhvRlyD~~S~np~-Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR 119 (311)
T KOG0315|consen 53 -----------KDLAAAGN-QHVRLYDLNSNNPN-PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQR 119 (311)
T ss_pred -----------chhhhccC-CeeEEEEccCCCCC-ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccch
Confidence 46666665 68999999866553 348999999999999999999999999999999999999977766
Q ss_pred EEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEee-ccccceeEEEEcCCCCEEEeecCCCe
Q 004581 167 RITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHS-FHKGDVNALAAAPSHNRVFSTGSDGQ 244 (744)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~~~~~dg~ 244 (744)
.+. +..+|.++..+|+. .|++|+.+|.|++||+.+..+...+- .....|.++...|||.+++.+...|+
T Consensus 120 ~~~---------~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~ 190 (311)
T KOG0315|consen 120 NYQ---------HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGN 190 (311)
T ss_pred hcc---------CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCcc
Confidence 664 77999999999988 89999999999999999876665543 33467999999999999999999999
Q ss_pred EEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCC
Q 004581 245 VILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLG 324 (744)
Q Consensus 245 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 324 (744)
.++|++-.... ....+++..++.|+..+....++ ||++
T Consensus 191 cyvW~l~~~~~-----------~s~l~P~~k~~ah~~~il~C~lS---------Pd~k---------------------- 228 (311)
T KOG0315|consen 191 CYVWRLLNHQT-----------ASELEPVHKFQAHNGHILRCLLS---------PDVK---------------------- 228 (311)
T ss_pred EEEEEccCCCc-----------cccceEhhheecccceEEEEEEC---------CCCc----------------------
Confidence 99999987542 12233445555666555555554 4444
Q ss_pred CcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCC
Q 004581 325 VPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGH 404 (744)
Q Consensus 325 ~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~ 404 (744)
+|++++.|.++++|+.+++
T Consensus 229 --~lat~ssdktv~iwn~~~~----------------------------------------------------------- 247 (311)
T KOG0315|consen 229 --YLATCSSDKTVKIWNTDDF----------------------------------------------------------- 247 (311)
T ss_pred --EEEeecCCceEEEEecCCc-----------------------------------------------------------
Confidence 5666666666655555431
Q ss_pred CCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEE
Q 004581 405 ASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLII 484 (744)
Q Consensus 405 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~ 484 (744)
.+ + ...+.+|...+...+||.||.||++
T Consensus 248 ------------------------------------------------~k---l-e~~l~gh~rWvWdc~FS~dg~YlvT 275 (311)
T KOG0315|consen 248 ------------------------------------------------FK---L-ELVLTGHQRWVWDCAFSADGEYLVT 275 (311)
T ss_pred ------------------------------------------------ee---e-EEEeecCCceEEeeeeccCccEEEe
Confidence 11 1 1334455568889999999999999
Q ss_pred EeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEE
Q 004581 485 AGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFT 528 (744)
Q Consensus 485 ~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 528 (744)
|+.|+.+++|++..++.++.+.+ |.....+++.
T Consensus 276 assd~~~rlW~~~~~k~v~qy~g-----------h~K~~vc~~l 308 (311)
T KOG0315|consen 276 ASSDHTARLWDLSAGKEVRQYQG-----------HHKAAVCVAL 308 (311)
T ss_pred cCCCCceeecccccCceeeecCC-----------cccccEEEEe
Confidence 99999999999999999999999 6666666654
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.5e-38 Score=294.20 Aligned_cols=323 Identities=19% Similarity=0.265 Sum_probs=271.5
Q ss_pred CCCCCC-eeEEecCCCeEEEEEccC----CceeEEee------c----cCcceeEEeeccCCCccccccccccccCCccc
Q 004581 1 MGLPGG-RLFSSSIDGSVSEWDLYD----LKQKIVLQ------S----IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYL 65 (744)
Q Consensus 1 ~~~~~~-~l~~~~~d~~i~iwd~~~----~~~~~~~~------~----h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~ 65 (744)
|.|... .|++++.|-+.++|++.. +.....|+ + ....|++++|+.+|
T Consensus 186 WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G------------------ 247 (524)
T KOG0273|consen 186 WNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDG------------------ 247 (524)
T ss_pred cCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCC------------------
Confidence 444444 799999999999999974 11111111 1 23679999999999
Q ss_pred cCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEE
Q 004581 66 NDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNML 145 (744)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l 145 (744)
..||+|+.||.++||+.. +..+ .+|..|+++|.++.|+.+|++|
T Consensus 248 --------------------------------~~LatG~~~G~~riw~~~-G~l~---~tl~~HkgPI~slKWnk~G~yi 291 (524)
T KOG0273|consen 248 --------------------------------TLLATGSEDGEARIWNKD-GNLI---STLGQHKGPIFSLKWNKKGTYI 291 (524)
T ss_pred --------------------------------CeEEEeecCcEEEEEecC-chhh---hhhhccCCceEEEEEcCCCCEE
Confidence 699999999999999996 5555 8899999999999999999999
Q ss_pred EEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeecccccee
Q 004581 146 YSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVN 225 (744)
Q Consensus 146 ~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~ 225 (744)
++++.|+++.+||..+|.....+. -|..+-..+.|..+..+++++.|+.|+|+.+...+++.++.+|.++|.
T Consensus 292 lS~~vD~ttilwd~~~g~~~q~f~--------~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~ 363 (524)
T KOG0273|consen 292 LSGGVDGTTILWDAHTGTVKQQFE--------FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVN 363 (524)
T ss_pred EeccCCccEEEEeccCceEEEeee--------eccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceE
Confidence 999999999999999999999888 377776788999888999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccc
Q 004581 226 ALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKR 305 (744)
Q Consensus 226 ~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~ 305 (744)
+|.|+|.|.+|++++.|+++++|+..... ....+..|+..|..+.++ |++..
T Consensus 364 alk~n~tg~LLaS~SdD~TlkiWs~~~~~-----------------~~~~l~~Hskei~t~~ws---------p~g~v-- 415 (524)
T KOG0273|consen 364 ALKWNPTGSLLASCSDDGTLKIWSMGQSN-----------------SVHDLQAHSKEIYTIKWS---------PTGPV-- 415 (524)
T ss_pred EEEECCCCceEEEecCCCeeEeeecCCCc-----------------chhhhhhhccceeeEeec---------CCCCc--
Confidence 99999999999999999999999987765 266789999999999998 55541
Q ss_pred cCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEE
Q 004581 306 SRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLD 385 (744)
Q Consensus 306 ~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~ 385 (744)
.|....+..+++++.|++|++||+..
T Consensus 416 -------------~~n~~~~~~l~sas~dstV~lwdv~~----------------------------------------- 441 (524)
T KOG0273|consen 416 -------------TSNPNMNLMLASASFDSTVKLWDVES----------------------------------------- 441 (524)
T ss_pred -------------cCCCcCCceEEEeecCCeEEEEEccC-----------------------------------------
Confidence 12233344677777777777776653
Q ss_pred EEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCc
Q 004581 386 ILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPR 465 (744)
Q Consensus 386 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~ 465 (744)
+..+ ..+..
T Consensus 442 ------------------------------------------------------------------gv~i-----~~f~k 450 (524)
T KOG0273|consen 442 ------------------------------------------------------------------GVPI-----HTLMK 450 (524)
T ss_pred ------------------------------------------------------------------Ccee-----Eeecc
Confidence 2222 23455
Q ss_pred ccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEE
Q 004581 466 KLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVY 545 (744)
Q Consensus 466 ~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~ 545 (744)
|..+|.+++|||+|+|+|+|+.||.|.+|+.+++++.+.+.+ .+.|..++|+.+|.+|..+-.|+.++
T Consensus 451 H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~------------~~~Ifel~Wn~~G~kl~~~~sd~~vc 518 (524)
T KOG0273|consen 451 HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG------------TGGIFELCWNAAGDKLGACASDGSVC 518 (524)
T ss_pred CCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC------------CCeEEEEEEcCCCCEEEEEecCCCce
Confidence 666999999999999999999999999999999999999996 77799999999999999999999999
Q ss_pred EEECC
Q 004581 546 IFNLE 550 (744)
Q Consensus 546 iwd~~ 550 (744)
+.|+.
T Consensus 519 vldlr 523 (524)
T KOG0273|consen 519 VLDLR 523 (524)
T ss_pred EEEec
Confidence 98864
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.9e-38 Score=292.27 Aligned_cols=331 Identities=19% Similarity=0.231 Sum_probs=275.0
Q ss_pred cCccCcEEEEEEecCCC-EEEEEeCCCeEEEEEccC--Cc--eEEEEEec--CCCCCCCCceeEEEEEEecCC-eEEEEc
Q 004581 127 PRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKL--GY--EIYRITVG--LGGLGSGPELCIWSLLSLRCG-TLVSAD 198 (744)
Q Consensus 127 ~~h~~~V~~~~~s~dg~-~l~t~~~dg~i~vwd~~~--~~--~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~-~l~s~~ 198 (744)
..|+.+|.+++|+|-.. .|++++.|...++|++.. .. ....++.. ...........|++++|+.+| .|++|+
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~ 254 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS 254 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee
Confidence 34999999999999877 899999999999999864 11 11111110 111122345789999999999 899999
Q ss_pred CCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeee
Q 004581 199 STGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA 278 (744)
Q Consensus 199 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (744)
.||.+++|+.. |.++.++..|.++|.++.|+.+|++|++++.|+++.+||..++.. ...+..
T Consensus 255 ~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~-----------------~q~f~~ 316 (524)
T KOG0273|consen 255 EDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV-----------------KQQFEF 316 (524)
T ss_pred cCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE-----------------EEeeee
Confidence 99999999987 889999999999999999999999999999999999999988762 456677
Q ss_pred ccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCC
Q 004581 279 HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQ 358 (744)
Q Consensus 279 h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~ 358 (744)
|+.+-..+.|- +...+++++.|+.|+++.+....
T Consensus 317 ~s~~~lDVdW~----------------------------------~~~~F~ts~td~~i~V~kv~~~~------------ 350 (524)
T KOG0273|consen 317 HSAPALDVDWQ----------------------------------SNDEFATSSTDGCIHVCKVGEDR------------ 350 (524)
T ss_pred ccCCccceEEe----------------------------------cCceEeecCCCceEEEEEecCCC------------
Confidence 77765566663 22379999999999999876422
Q ss_pred CCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-Ec
Q 004581 359 RVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SD 437 (744)
Q Consensus 359 ~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~ 437 (744)
++.++. +|...|.++.|.|.|.+|++ ++
T Consensus 351 --------------------------------------------------P~~t~~-GH~g~V~alk~n~tg~LLaS~Sd 379 (524)
T KOG0273|consen 351 --------------------------------------------------PVKTFI-GHHGEVNALKWNPTGSLLASCSD 379 (524)
T ss_pred --------------------------------------------------cceeee-cccCceEEEEECCCCceEEEecC
Confidence 122233 37799999999999999999 58
Q ss_pred CCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCC---------EEEEEeCCCcEEEEEccCCceeeeeccC
Q 004581 438 HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSS---------QLIIAGHDRRIYVVDVSSSELLHTFTPC 508 (744)
Q Consensus 438 ~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~---------~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 508 (744)
|++++||++.. .... ..+..|...|..+.|+|+|. .+++++.|++|++||+..+.++++|..
T Consensus 380 D~TlkiWs~~~---~~~~-----~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k- 450 (524)
T KOG0273|consen 380 DGTLKIWSMGQ---SNSV-----HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK- 450 (524)
T ss_pred CCeeEeeecCC---Ccch-----hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc-
Confidence 99999999865 2232 56778888999999999754 789999999999999999999999987
Q ss_pred cccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeE
Q 004581 509 REEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQV 588 (744)
Q Consensus 509 ~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v 588 (744)
|..+|.+++|||+|+|||+|+.||.|+||+.++++....... ++.|..++|+. +|++|..+-.|+.+
T Consensus 451 ----------H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~--~~~Ifel~Wn~-~G~kl~~~~sd~~v 517 (524)
T KOG0273|consen 451 ----------HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG--TGGIFELCWNA-AGDKLGACASDGSV 517 (524)
T ss_pred ----------CCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC--CCeEEEEEEcC-CCCEEEEEecCCCc
Confidence 999999999999999999999999999999999998877754 35799999999 99999999999999
Q ss_pred EEEEcC
Q 004581 589 YVFDVE 594 (744)
Q Consensus 589 ~vwd~~ 594 (744)
.+-|+.
T Consensus 518 cvldlr 523 (524)
T KOG0273|consen 518 CVLDLR 523 (524)
T ss_pred eEEEec
Confidence 998874
No 24
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5.2e-37 Score=276.48 Aligned_cols=341 Identities=16% Similarity=0.195 Sum_probs=272.9
Q ss_pred eeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecC
Q 004581 27 QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDD 106 (744)
Q Consensus 27 ~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d 106 (744)
.+.+|..|...|.+++.+|+. +++|+|+.|
T Consensus 56 S~~tF~~H~~svFavsl~P~~--------------------------------------------------~l~aTGGgD 85 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNN--------------------------------------------------NLVATGGGD 85 (399)
T ss_pred ceeehhhcCCceEEEEeCCCC--------------------------------------------------ceEEecCCC
Confidence 456899999999999999976 699999999
Q ss_pred CeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEE
Q 004581 107 GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSL 186 (744)
Q Consensus 107 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 186 (744)
..-.||++.+++.+ ..+.+|+..|+++.||.||.+||||+-+|.|+||+..+|.....+. .....+.-+
T Consensus 86 D~AflW~~~~ge~~---~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~--------~e~~dieWl 154 (399)
T KOG0296|consen 86 DLAFLWDISTGEFA---GELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD--------QEVEDIEWL 154 (399)
T ss_pred ceEEEEEccCCcce---eEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee--------cccCceEEE
Confidence 99999999988855 8899999999999999999999999999999999999999998886 355677889
Q ss_pred EEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCccc
Q 004581 187 LSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSE 265 (744)
Q Consensus 187 ~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 265 (744)
.|+|.+ .|++|+.||.+.+|.+.++...+.+.+|..++++=.|.|+|++++++..||+|++|+..+++.
T Consensus 155 ~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p---------- 224 (399)
T KOG0296|consen 155 KWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQP---------- 224 (399)
T ss_pred EecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCce----------
Confidence 999988 899999999999999999888999999999999999999999999999999999999998762
Q ss_pred ccceEEEEeeeee-ccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCc
Q 004581 266 VIKKWIYVGSVRA-HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 344 (744)
Q Consensus 266 ~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~ 344 (744)
+..+.+ ......++.++ .+ +..++.|..++.+++-+..+
T Consensus 225 -------~~~~~~~e~~~~~~~~~~---------~~------------------------~~~~~~g~~e~~~~~~~~~s 264 (399)
T KOG0296|consen 225 -------LHKITQAEGLELPCISLN---------LA------------------------GSTLTKGNSEGVACGVNNGS 264 (399)
T ss_pred -------eEEecccccCcCCccccc---------cc------------------------cceeEeccCCccEEEEcccc
Confidence 222221 12223344432 11 22677777777666644332
Q ss_pred cCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEE
Q 004581 345 FTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICS 424 (744)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 424 (744)
.+ ++.+..+
T Consensus 265 gK-----------------------------Vv~~~n~------------------------------------------ 273 (399)
T KOG0296|consen 265 GK-----------------------------VVNCNNG------------------------------------------ 273 (399)
T ss_pred ce-----------------------------EEEecCC------------------------------------------
Confidence 11 1111000
Q ss_pred EEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeee
Q 004581 425 TISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHT 504 (744)
Q Consensus 425 ~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~ 504 (744)
. ...+ +.........+-.+.++..=.+.|+|+-||+|.|||+...++.+.
T Consensus 274 ----~----------------------~~~l----~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~ 323 (399)
T KOG0296|consen 274 ----T----------------------VPEL----KPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI 323 (399)
T ss_pred ----C----------------------Cccc----cccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhee
Confidence 0 0000 000111111344455566667889999999999999998877777
Q ss_pred eccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEec
Q 004581 505 FTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTS 584 (744)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~ 584 (744)
+. |...|+.+.|-+ ..+|++++.+|.|+.||..++++...+.+ |...|.+++.+| +.+++++++.
T Consensus 324 c~------------he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G-H~~~Il~f~ls~-~~~~vvT~s~ 388 (399)
T KOG0296|consen 324 CE------------HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTG-HQMGILDFALSP-QKRLVVTVSD 388 (399)
T ss_pred cc------------CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEec-CchheeEEEEcC-CCcEEEEecC
Confidence 66 789999999998 78999999999999999999999888865 778999999999 9999999999
Q ss_pred CCeEEEEEcC
Q 004581 585 SNQVYVFDVE 594 (744)
Q Consensus 585 d~~v~vwd~~ 594 (744)
|++.+||++.
T Consensus 389 D~~a~VF~v~ 398 (399)
T KOG0296|consen 389 DNTALVFEVP 398 (399)
T ss_pred CCeEEEEecC
Confidence 9999999875
No 25
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=5.9e-37 Score=304.65 Aligned_cols=462 Identities=18% Similarity=0.213 Sum_probs=351.9
Q ss_pred eeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCc
Q 004581 7 RLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDS 86 (744)
Q Consensus 7 ~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (744)
.++.|+.+|.+.+||+.+++.+++++++...|+++.=+|--
T Consensus 174 KIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaL--------------------------------------- 214 (910)
T KOG1539|consen 174 KIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPAL--------------------------------------- 214 (910)
T ss_pred eEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcc---------------------------------------
Confidence 47899999999999999999999999999999999999976
Q ss_pred ccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCC-EEEEEeCCCeEEEEEccCCceE
Q 004581 87 DELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKLGYEI 165 (744)
Q Consensus 87 ~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~-~l~t~~~dg~i~vwd~~~~~~~ 165 (744)
+.+|+|..+|+|.|+++..++.+ .+|+.-.++|++++|..||. .||+|+..|.+.+||++..+.+
T Consensus 215 -----------DVVaiG~~~G~ViifNlK~dkil---~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~ 280 (910)
T KOG1539|consen 215 -----------DVVAIGLENGTVIIFNLKFDKIL---MSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLI 280 (910)
T ss_pred -----------eEEEEeccCceEEEEEcccCcEE---EEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeee
Confidence 69999999999999999988877 67764469999999999998 5677777899999999988888
Q ss_pred EEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCC--c--ceEEEeeccccceeEEEEc-CCCCEEEee
Q 004581 166 YRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH--G--TLLQAHSFHKGDVNALAAA-PSHNRVFST 239 (744)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~--~--~~~~~~~~h~~~v~~l~~~-~~~~~l~~~ 239 (744)
..+.. .|.+.|....|.|.. .+++++.|+.+++|=.++ | +.++.-.+|..+..|+.|. .+|..+.++
T Consensus 281 ~v~~n-------ah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa 353 (910)
T KOG1539|consen 281 NVTRN-------AHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSA 353 (910)
T ss_pred eeeec-------cccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEec
Confidence 77774 688889999999888 899999999999885554 3 5667778999999999998 678999999
Q ss_pred cCCCeEEEEEcccCcCCCCCCCCcccccceEEEEe-eeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcccccc
Q 004581 240 GSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVG-SVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYH 318 (744)
Q Consensus 240 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (744)
+.|++++.+++....+....+........+-.... .....-.+|..+++. ..+ -.
T Consensus 354 ~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~----------~~R--------------E~ 409 (910)
T KOG1539|consen 354 KQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFE----------NAR--------------EK 409 (910)
T ss_pred ccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecc----------cch--------------hh
Confidence 99999999988765532211110000000000000 001112234444432 110 00
Q ss_pred ccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEE--eCCeEEEEEeeccCCcc
Q 004581 319 KWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ--YSCRLDILSVRLENNVE 396 (744)
Q Consensus 319 ~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~~i~i~~~~~~~~~~ 396 (744)
.| .+.++..-.+..++.|+..+... ..+...+.+.......+.+++.++.|.+.+. ..+.|.++++..+-...
T Consensus 410 ~W----~Nv~~~h~~~~~~~tW~~~n~~~-G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~ 484 (910)
T KOG1539|consen 410 EW----DNVITAHKGKRSAYTWNFRNKTS-GRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRK 484 (910)
T ss_pred hh----cceeEEecCcceEEEEeccCccc-ccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeec
Confidence 12 12555556677999999987543 1222223333334567888999998886665 46799999998764221
Q ss_pred cCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEE
Q 004581 397 SRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIF 475 (744)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 475 (744)
-+.-...|...|+.++...-++.+++ +.+|.++.|++.. ... +....+ ...+.++..
T Consensus 485 -------------sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~---k~l---~~~l~l---~~~~~~iv~ 542 (910)
T KOG1539|consen 485 -------------SFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKK---KVL---KKSLRL---GSSITGIVY 542 (910)
T ss_pred -------------ccccCccccCceeEEEecCCCceEEEccCcceEEEEecCC---cce---eeeecc---CCCcceeee
Confidence 01112467789999999988887776 6999999999975 211 111222 126788888
Q ss_pred eeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceE
Q 004581 476 SYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQH 555 (744)
Q Consensus 476 spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~ 555 (744)
+.....+|++..|-.|+++|..+.+.++.|.+ |...|++++|||||+||++++.|++|++||+.++.++
T Consensus 543 hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g-----------h~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 543 HRVSDLLAIALDDFSIRVVDVVTRKVVREFWG-----------HGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred eehhhhhhhhcCceeEEEEEchhhhhhHHhhc-----------cccceeeeEeCCCCcEEEEeecCCcEEEEeccCccee
Confidence 88999999999999999999999999999999 9999999999999999999999999999999999987
Q ss_pred EEEecCCCCceeEEeecCCCCCeEEEEecC-CeEEEEEc
Q 004581 556 WFISRLEGASVTAAGFPPQNNNVLIITTSS-NQVYVFDV 593 (744)
Q Consensus 556 ~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d-~~v~vwd~ 593 (744)
-.+.. ..+.+++.|+| +|++||++..| .-|++|.=
T Consensus 612 D~~~v--d~~~~sls~SP-ngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 612 DGLLV--DSPCTSLSFSP-NGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred eeEec--CCcceeeEECC-CCCEEEEEEecCceEEEEEc
Confidence 77654 35899999999 99999999998 58999963
No 26
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=5.1e-37 Score=299.07 Aligned_cols=460 Identities=18% Similarity=0.243 Sum_probs=332.5
Q ss_pred CCCCCeeEEe--cCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccC------------------
Q 004581 2 GLPGGRLFSS--SIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIG------------------ 61 (744)
Q Consensus 2 ~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~------------------ 61 (744)
++.|.++|+| |....+++|++.+-.++..|..|...|+|++|+|.++|+++.+..++.+.
T Consensus 87 S~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnkiss 166 (1080)
T KOG1408|consen 87 SQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNKISS 166 (1080)
T ss_pred cCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhcccccccccce
Confidence 5567778887 47789999999999999999999999999999999999997766544322
Q ss_pred ---------------------CccccCCCCCC--CC-------CcCccCCCCCC----------ccccccccc-------
Q 004581 62 ---------------------NGYLNDKSNDS--DD-------HETSESENDSD----------SDELHEQSV------- 94 (744)
Q Consensus 62 ---------------------~~~~~~~~~~~--~~-------~~~~~~~~~~~----------~~~~~~~~~------- 94 (744)
+.+|+.....+ .+ ..+..+.+... ....++...
T Consensus 167 ~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEF 246 (1080)
T KOG1408|consen 167 VVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEF 246 (1080)
T ss_pred eEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeee
Confidence 33333322110 00 00011111110 011111111
Q ss_pred ---------------------ccCCeEEEEecCCeEEEEEecCCCceeEeeccc--------------------Ccc---
Q 004581 95 ---------------------VEDRRVALACDDGCVRIYRITDSDELIYHRSLP--------------------RVS--- 130 (744)
Q Consensus 95 ---------------------~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~--------------------~h~--- 130 (744)
...+++++||.+|.|+||+.++-. +..++. +..
T Consensus 247 SsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~---y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~ 323 (1080)
T KOG1408|consen 247 SSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLD---YAGTLPRSHALGSDTANLSQPEPKNSESSPAI 323 (1080)
T ss_pred chhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhh---hccccccccccccchhhcccccccccccCccc
Confidence 145799999999999999875322 111111 000
Q ss_pred -CcEEEEEEecCCCEEEEEeCCCeEEEEEccCCc----eEEEEEecCCCCCCCCceeEEEEEEec------------CCe
Q 004581 131 -GRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY----EIYRITVGLGGLGSGPELCIWSLLSLR------------CGT 193 (744)
Q Consensus 131 -~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~------------~~~ 193 (744)
--..++.|++....|...-.|..+.|||++.-. +...+ -|...||.+.-.| .+-
T Consensus 324 fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~l---------yHS~ciW~Ve~~p~nv~~~~~aclp~~c 394 (1080)
T KOG1408|consen 324 FPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSML---------YHSACIWDVENLPCNVHSPTAACLPRGC 394 (1080)
T ss_pred CCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeee---------eccceeeeeccccccccCcccccCCccc
Confidence 113578899999999999999999999997743 33333 4899999987654 346
Q ss_pred EEEEcCCCCEEEEeCCCcceEEEe-------------------------------------eccccceeEEEEcCCCCEE
Q 004581 194 LVSADSTGSVQFWDSRHGTLLQAH-------------------------------------SFHKGDVNALAAAPSHNRV 236 (744)
Q Consensus 194 l~s~~~dg~i~vwd~~~~~~~~~~-------------------------------------~~h~~~v~~l~~~~~~~~l 236 (744)
++++++|++|++||+..+..-..+ -.....+.+++++|+|++|
T Consensus 395 F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhL 474 (1080)
T KOG1408|consen 395 FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHL 474 (1080)
T ss_pred eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCccee
Confidence 899999999999999853211110 0112468999999999999
Q ss_pred EeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcccc
Q 004581 237 FSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFS 316 (744)
Q Consensus 237 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (744)
++|..-|++++|++..-. ....+..|...|.|+.++.|.-
T Consensus 475 AsGDr~GnlrVy~Lq~l~-----------------~~~~~eAHesEilcLeyS~p~~----------------------- 514 (1080)
T KOG1408|consen 475 ASGDRGGNLRVYDLQELE-----------------YTCFMEAHESEILCLEYSFPVL----------------------- 514 (1080)
T ss_pred cccCccCceEEEEehhhh-----------------hhhheecccceeEEEeecCchh-----------------------
Confidence 999999999999998765 2567789999999999973211
Q ss_pred ccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcc
Q 004581 317 YHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVE 396 (744)
Q Consensus 317 ~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~ 396 (744)
...+|++++.|..|.+||......
T Consensus 515 -------~~kLLASasrdRlIHV~Dv~rny~------------------------------------------------- 538 (1080)
T KOG1408|consen 515 -------TNKLLASASRDRLIHVYDVKRNYD------------------------------------------------- 538 (1080)
T ss_pred -------hhHhhhhccCCceEEEEecccccc-------------------------------------------------
Confidence 224899999999999999864221
Q ss_pred cCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC---CEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEE
Q 004581 397 SRSSSGGHASTSLLVQVKSKASRKIICSTISNSG---MLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSM 473 (744)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g---~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 473 (744)
+.+....|...|+++.|.-+| ++|.+|.|.. ..|+.....+...++.-.+..+. ...+..|
T Consensus 539 -------------l~qtld~HSssITsvKFa~~gln~~MiscGADks-imFr~~qk~~~g~~f~r~t~t~~--ktTlYDm 602 (1080)
T KOG1408|consen 539 -------------LVQTLDGHSSSITSVKFACNGLNRKMISCGADKS-IMFRVNQKASSGRLFPRHTQTLS--KTTLYDM 602 (1080)
T ss_pred -------------hhhhhcccccceeEEEEeecCCceEEEeccCchh-hheehhccccCceeccccccccc--cceEEEe
Confidence 111123456788888888777 3444455544 44554432222232211111111 2268899
Q ss_pred EEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcc
Q 004581 474 IFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQR 553 (744)
Q Consensus 474 ~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~ 553 (744)
+..|..+++++++.|..|+|||+++|+..+.|++.+. |.+..-.+...|.|.|||+...|.++.+||.-+++
T Consensus 603 ~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~--------~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgE 674 (1080)
T KOG1408|consen 603 AVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRD--------HEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGE 674 (1080)
T ss_pred eeCCCcceEEEEecccceEEEeccccceeeeeccccc--------CCCceEEEEECCCccEEEEeecCCceEEEEeccch
Confidence 9999999999999999999999999999999998655 88889999999999999999999999999999999
Q ss_pred eEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCC
Q 004581 554 QHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 595 (744)
Q Consensus 554 ~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~ 595 (744)
+...+.+ |+..|+.+.|.+ |-+.|++++.||.|+||.+..
T Consensus 675 cvA~m~G-HsE~VTG~kF~n-DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 675 CVAQMTG-HSEAVTGVKFLN-DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hhhhhcC-cchheeeeeecc-cchhheeecCCceEEEEECch
Confidence 9888865 778999999999 999999999999999999864
No 27
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-37 Score=278.73 Aligned_cols=305 Identities=17% Similarity=0.216 Sum_probs=256.9
Q ss_pred ceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEec
Q 004581 26 KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACD 105 (744)
Q Consensus 26 ~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 105 (744)
...+.+.+|..+|+.+-|+|+- ..++++++
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~--------------------------------------------------~~v~~as~ 128 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSE--------------------------------------------------ALVVSASE 128 (406)
T ss_pred CchhhhhccccceeeeeeccCc--------------------------------------------------eEEEEecC
Confidence 3445677788888888898887 58889999
Q ss_pred CCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccC-CceEEEEEecCCCCCCCCceeEE
Q 004581 106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL-GYEIYRITVGLGGLGSGPELCIW 184 (744)
Q Consensus 106 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~ 184 (744)
|++|++||..+++.. +.++||...|..++|+..|++||+++.|-.+++||.++ .+++..+. +|+..|.
T Consensus 129 d~tikv~D~~tg~~e---~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~--------gh~h~vS 197 (406)
T KOG0295|consen 129 DATIKVFDTETGELE---RSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLI--------GHEHGVS 197 (406)
T ss_pred CceEEEEEccchhhh---hhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhc--------Cccccee
Confidence 999999999988775 99999999999999999999999999998899999977 55666665 7999999
Q ss_pred EEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCc
Q 004581 185 SLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSS 263 (744)
Q Consensus 185 ~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 263 (744)
+++|.|.| ++++++.|.+|+.|+..+|-++.++.+|...|..++.+.||..+++++.|.++++|-+.+++
T Consensus 198 ~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~--------- 268 (406)
T KOG0295|consen 198 SVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ--------- 268 (406)
T ss_pred eEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccch---------
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999876
Q ss_pred ccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecC
Q 004581 264 SEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCAN 343 (744)
Q Consensus 264 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~ 343 (744)
+...++.|.++|.+++|.+.......... .-+..+++++.+++.|++|++||+.
T Consensus 269 --------~k~~lR~hEh~vEci~wap~~~~~~i~~a------------------t~~~~~~~~l~s~SrDktIk~wdv~ 322 (406)
T KOG0295|consen 269 --------CKAELREHEHPVECIAWAPESSYPSISEA------------------TGSTNGGQVLGSGSRDKTIKIWDVS 322 (406)
T ss_pred --------hhhhhhccccceEEEEecccccCcchhhc------------------cCCCCCccEEEeecccceEEEEecc
Confidence 35678999999999999743221100000 0001133466666666666666665
Q ss_pred ccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEE
Q 004581 344 EFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIIC 423 (744)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 423 (744)
+
T Consensus 323 t------------------------------------------------------------------------------- 323 (406)
T KOG0295|consen 323 T------------------------------------------------------------------------------- 323 (406)
T ss_pred C-------------------------------------------------------------------------------
Confidence 3
Q ss_pred EEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceee
Q 004581 424 STISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLH 503 (744)
Q Consensus 424 ~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~ 503 (744)
+.++ .++.+|...|+.++|+|.|+||+++.+|+++++||++++++++
T Consensus 324 ----------------------------g~cL-----~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk 370 (406)
T KOG0295|consen 324 ----------------------------GMCL-----FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMK 370 (406)
T ss_pred ----------------------------CeEE-----EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeee
Confidence 1222 3345666799999999999999999999999999999999999
Q ss_pred eeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEEC
Q 004581 504 TFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL 549 (744)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~ 549 (744)
++.. |..-++++.|..+..|+++|+-|..+++|.-
T Consensus 371 ~~~a-----------h~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 371 TLEA-----------HEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ccCC-----------CcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9998 8999999999999999999999999999963
No 28
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.1e-34 Score=282.91 Aligned_cols=506 Identities=12% Similarity=0.095 Sum_probs=344.0
Q ss_pred CCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCccccccc
Q 004581 13 IDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQ 92 (744)
Q Consensus 13 ~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (744)
....|.++|+...++-+.+..|..+++|+|||++|
T Consensus 56 AGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~G--------------------------------------------- 90 (1080)
T KOG1408|consen 56 AGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNG--------------------------------------------- 90 (1080)
T ss_pred cCcEEEEEcccccchhheecccCcceeEEEEcCCC---------------------------------------------
Confidence 45689999999988888899999999999999999
Q ss_pred ccccCCeEEEEe--cCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeC--CCeEEEEEccCCceEEEE
Q 004581 93 SVVEDRRVALAC--DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS--DGYIRSWDAKLGYEIYRI 168 (744)
Q Consensus 93 ~~~~~~~la~~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~--dg~i~vwd~~~~~~~~~~ 168 (744)
+++|+|- ....+++|++.....+ ..|..|+-.|+|++|+|.++++++.+. |-.|.+||++.......-
T Consensus 91 -----ryvatGEcG~~pa~kVw~la~h~vV---AEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asn 162 (1080)
T KOG1408|consen 91 -----RYVATGECGRTPASKVWSLAFHGVV---AEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASN 162 (1080)
T ss_pred -----cEEEecccCCCccceeeeeccccch---hhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhccccccc
Confidence 4666664 6678999999977766 889999999999999999999998776 556888887654333222
Q ss_pred EecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEE-------------E------------------
Q 004581 169 TVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQ-------------A------------------ 216 (744)
Q Consensus 169 ~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~-------------~------------------ 216 (744)
.....|..++|+.|| ++++.+ ..+|++|.++.++... .
T Consensus 163 ---------kiss~Vsav~fsEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAe 232 (1080)
T KOG1408|consen 163 ---------KISSVVSAVAFSEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAE 232 (1080)
T ss_pred ---------ccceeEEEEEEccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCccccc
Confidence 355677888888888 555544 5678888776433100 0
Q ss_pred ----e--ecc-----------------ccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcC------------------
Q 004581 217 ----H--SFH-----------------KGDVNALAAAPSHNRVFSTGSDGQVILYKASCESI------------------ 255 (744)
Q Consensus 217 ----~--~~h-----------------~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~------------------ 255 (744)
+ ++| +....|++.+ .++|++|+.+|.|++|+..+-..
T Consensus 233 stfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~ 310 (1080)
T KOG1408|consen 233 STFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLS 310 (1080)
T ss_pred ceEEEecccceeeechhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcc
Confidence 0 000 1112334443 45667777777777776544221
Q ss_pred -------CCCCCC----Cc--ccccceEE---------------------EEeeeeeccCcceeeeeeccCCCCCCCCcc
Q 004581 256 -------GPNDGL----SS--SEVIKKWI---------------------YVGSVRAHTHDVRALTVAVPISREDPLPED 301 (744)
Q Consensus 256 -------~~~~~~----~~--~~~~~~~~---------------------~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~ 301 (744)
...... ++ ......|. ....+..|+..|..+...+ -.
T Consensus 311 q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p---------~n 381 (1080)
T KOG1408|consen 311 QPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLP---------CN 381 (1080)
T ss_pred cccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeecccc---------cc
Confidence 000000 00 00011111 1223344555555554321 00
Q ss_pred cccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCc------------------------------
Q 004581 302 KVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPH------------------------------ 351 (744)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~------------------------------ 351 (744)
- ... .-+.-....+++++.|++|++|++.....-...
T Consensus 382 v---~~~----------~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~f 448 (1080)
T KOG1408|consen 382 V---HSP----------TAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIF 448 (1080)
T ss_pred c---cCc----------ccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcc
Confidence 0 000 000111236999999999999999752110000
Q ss_pred ccCCCCCCCccccccceeecCCeEEEEEeCC--eEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCC
Q 004581 352 EICPAPQRVPIHLVHNTIFSHTSLLLVQYSC--RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNS 429 (744)
Q Consensus 352 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 429 (744)
.......-.....+++++.+|+++.|++++. .+++|++.... .......|...|.|+.+|..
T Consensus 449 dka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~----------------~~~~~eAHesEilcLeyS~p 512 (1080)
T KOG1408|consen 449 DKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE----------------YTCFMEAHESEILCLEYSFP 512 (1080)
T ss_pred cccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh----------------hhhheecccceeEEEeecCc
Confidence 0000011122357889999999999999875 89999887544 12233567889999999864
Q ss_pred ---CCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCC--CEEEEEeCCCcEEEEEccCCceee
Q 004581 430 ---GMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS--SQLIIAGHDRRIYVVDVSSSELLH 503 (744)
Q Consensus 430 ---g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~--~~l~~~~~dg~i~v~d~~~~~~~~ 503 (744)
.++||. +.|.-|.+||... ... + .+.+.+|...|+++.|-..| ..+++++.|..|.+--.+...-..
T Consensus 513 ~~~~kLLASasrdRlIHV~Dv~r---ny~---l-~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~ 585 (1080)
T KOG1408|consen 513 VLTNKLLASASRDRLIHVYDVKR---NYD---L-VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGR 585 (1080)
T ss_pred hhhhHhhhhccCCceEEEEeccc---ccc---h-hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCce
Confidence 377888 5888999999865 111 1 16788899999999998877 678888888866543322111111
Q ss_pred eeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCC--CceeEEeecCCCCCeEEE
Q 004581 504 TFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEG--ASVTAAGFPPQNNNVLII 581 (744)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~l~~sp~~~~~l~~ 581 (744)
.|..+.. ......+..|+..|..+++++++.|.+|+||++++++....+++.+. +....+...| .|.|||+
T Consensus 586 ~f~r~t~------t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~at 658 (1080)
T KOG1408|consen 586 LFPRHTQ------TLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLAT 658 (1080)
T ss_pred ecccccc------ccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEE
Confidence 1221000 00246688999999999999999999999999999999999987654 5678889999 9999999
Q ss_pred EecCCeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCCCCCcEEEEEcCceEEEEeC
Q 004581 582 TTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDF 647 (744)
Q Consensus 582 ~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~~~~~~~ 647 (744)
.+.|.++.+||.-+|++ ..+..+|...|+++.|.+| ....+-+.+...||+..+
T Consensus 659 Scsdktl~~~Df~sgEc-----------vA~m~GHsE~VTG~kF~nD-CkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 659 SCSDKTLCFVDFVSGEC-----------VAQMTGHSEAVTGVKFLND-CKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred eecCCceEEEEeccchh-----------hhhhcCcchheeeeeeccc-chhheeecCCceEEEEEC
Confidence 99999999999999974 6678899999999999999 666677778888887665
No 29
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=7.1e-35 Score=284.00 Aligned_cols=498 Identities=13% Similarity=0.120 Sum_probs=346.7
Q ss_pred eEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcc
Q 004581 8 LFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSD 87 (744)
Q Consensus 8 l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (744)
+++-|....|.+||..+.....++.+|..+|+|+.+-|+.+..
T Consensus 27 ~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~------------------------------------- 69 (764)
T KOG1063|consen 27 LVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIV------------------------------------- 69 (764)
T ss_pred eEEecCCceEEEeCcccceeEEeccCCccceEEEEEccccccc-------------------------------------
Confidence 3444556899999999877788899999999999999998632
Q ss_pred cccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCc--eE
Q 004581 88 ELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY--EI 165 (744)
Q Consensus 88 ~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~--~~ 165 (744)
.++++|+.|+.|++|.++ .+.+.....+.+|...+.|+ +.........+.|+.+.+||.+..+ +.
T Consensus 70 ----------a~~vsG~sD~~v~lW~l~-~~~~~~i~~~~g~~~~~~cv--~a~~~~~~~~~ad~~v~vw~~~~~e~~~~ 136 (764)
T KOG1063|consen 70 ----------AEMVSGDSDGRVILWKLR-DEYLIKIYTIQGHCKECVCV--VARSSVMTCKAADGTVSVWDKQQDEVFLL 136 (764)
T ss_pred ----------ceEEEccCCCcEEEEEEe-ehheEEEEeecCcceeEEEE--EeeeeEEEeeccCceEEEeecCCCceeee
Confidence 389999999999999998 56666668888876655554 4322233333689999999985444 22
Q ss_pred EEEEecCCCCCCCCceeEEEEEEecC-C--eEEEEcCCCCEEEEeCCC--cceEEEeeccccceeEEEEcCCCC---EEE
Q 004581 166 YRITVGLGGLGSGPELCIWSLLSLRC-G--TLVSADSTGSVQFWDSRH--GTLLQAHSFHKGDVNALAAAPSHN---RVF 237 (744)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~--~l~s~~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~---~l~ 237 (744)
..+... .....-.|+++.++ + .++.|+.+..|.++.-.. .+.+..+.+|...|.+++|...+. +|+
T Consensus 137 ~~~rf~------~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~la 210 (764)
T KOG1063|consen 137 AVLRFE------IKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLA 210 (764)
T ss_pred hheehh------hhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEE
Confidence 223211 11223345566663 3 577788888888887654 356788999999999999987554 788
Q ss_pred eecCCCeEEEEEcccCcCCC----CCCCCcccccceEEEE----------eeeeeccCcceeeeeeccCCCCCCCCcccc
Q 004581 238 STGSDGQVILYKASCESIGP----NDGLSSSEVIKKWIYV----------GSVRAHTHDVRALTVAVPISREDPLPEDKV 303 (744)
Q Consensus 238 ~~~~dg~i~iw~~~~~~~~~----~~~~~~~~~~~~~~~~----------~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~ 303 (744)
+++.|..|++|.+.-..... ............+... ..+.+|.+.|.++.|. |++.
T Consensus 211 S~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~---------p~~~- 280 (764)
T KOG1063|consen 211 SSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWH---------PEGL- 280 (764)
T ss_pred ecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEc---------cchh-
Confidence 99999999999987654211 1111111112222222 2234899999999996 4443
Q ss_pred cccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeC--
Q 004581 304 KRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS-- 381 (744)
Q Consensus 304 ~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-- 381 (744)
.|++++.|.++.+|...+..-+..................+..|+|++..+++.+
T Consensus 281 -----------------------~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~ 337 (764)
T KOG1063|consen 281 -----------------------DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRT 337 (764)
T ss_pred -----------------------hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEeccc
Confidence 7999999999999998765333222211111222334567888999997777654
Q ss_pred CeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCceEEEEeecCC----------
Q 004581 382 CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGK---------- 450 (744)
Q Consensus 382 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~~~~---------- 450 (744)
+...+|.-.....- .......+|-..+..++|+|.|++|.+ +.|.+.|+|..-...
T Consensus 338 Gg~hlWkt~d~~~w-------------~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQ 404 (764)
T KOG1063|consen 338 GGFHLWKTKDKTFW-------------TQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQ 404 (764)
T ss_pred CcEEEEeccCccce-------------eeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccc
Confidence 58888882211100 122234677788999999999998776 788888877543000
Q ss_pred ---------------------CCCc---eEEe------------------------------------------------
Q 004581 451 ---------------------VGQG---EWII------------------------------------------------ 458 (744)
Q Consensus 451 ---------------------~~~~---~~~~------------------------------------------------ 458 (744)
...+ .++.
T Consensus 405 iHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~ 484 (764)
T KOG1063|consen 405 IHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGE 484 (764)
T ss_pred cccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccc
Confidence 0000 0000
Q ss_pred --------------------------------eeccCCcccccccEEEEeeCCCEEEEEeCCC-----cEEEEEccCCce
Q 004581 459 --------------------------------NKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR-----RIYVVDVSSSEL 501 (744)
Q Consensus 459 --------------------------------~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg-----~i~v~d~~~~~~ 501 (744)
+..++.+|.-.|.+++.+|+++++|+++... .|++|+..+...
T Consensus 485 ~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~ 564 (764)
T KOG1063|consen 485 AAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ 564 (764)
T ss_pred cceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh
Confidence 0001234444789999999999999997643 699999998888
Q ss_pred eeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceE---EEEecCCCCceeEEeecCCCCCe
Q 004581 502 LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQH---WFISRLEGASVTAAGFPPQNNNV 578 (744)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~l~~sp~~~~~ 578 (744)
++.+.+ |.-.|+.|+|||||+||++++.|.++.+|........ ......|..-|.++.|+| ++.+
T Consensus 565 ~~~L~~-----------HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p-de~~ 632 (764)
T KOG1063|consen 565 VQELEG-----------HSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP-DEKY 632 (764)
T ss_pred hheecc-----------cceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCc-ccce
Confidence 888888 9999999999999999999999999999998544321 111345778899999999 9999
Q ss_pred EEEEecCCeEEEEEcCCCccccccccccCCccc-ccccCCCceEEEEeCC
Q 004581 579 LIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPR-RYQEFPGEVIGLSFSP 627 (744)
Q Consensus 579 l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~-~~~~~~~~v~~i~fsp 627 (744)
+++++.|.+|++|......-. .+++ ....+...|+.+++.|
T Consensus 633 FaTaSRDK~VkVW~~~~~~d~--------~i~~~a~~~~~~aVTAv~~~~ 674 (764)
T KOG1063|consen 633 FATASRDKKVKVWEEPDLRDK--------YISRFACLKFSLAVTAVAYLP 674 (764)
T ss_pred eEEecCCceEEEEeccCchhh--------hhhhhchhccCCceeeEEeec
Confidence 999999999999999877210 1122 3445678999999988
No 30
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.2e-35 Score=253.54 Aligned_cols=297 Identities=20% Similarity=0.268 Sum_probs=243.8
Q ss_pred ceeEEeeccCcceeEEeeccC-CCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEe
Q 004581 26 KQKIVLQSIDFSIWQMAVAPS-NSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC 104 (744)
Q Consensus 26 ~~~~~~~~h~~~i~~v~~sp~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 104 (744)
..++.+++|.++|+.+||+|- | ..||+++
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g--------------------------------------------------~ilAscg 34 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKG--------------------------------------------------VILASCG 34 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCc--------------------------------------------------eEEEeec
Confidence 356678999999999999997 6 5899999
Q ss_pred cCCeEEEEEecCCCceeEeecc-cCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCC--ceEEEEEecCCCCCCCCce
Q 004581 105 DDGCVRIYRITDSDELIYHRSL-PRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG--YEIYRITVGLGGLGSGPEL 181 (744)
Q Consensus 105 ~dg~i~iwd~~~~~~~~~~~~~-~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~ 181 (744)
.|+.|+||+...+....+...+ .+|+..|++++|+|.|++||+|+.|.++.||.-..+ +++..+. +|+.
T Consensus 35 ~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lE--------GHEn 106 (312)
T KOG0645|consen 35 TDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLE--------GHEN 106 (312)
T ss_pred CCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeee--------cccc
Confidence 9999999999865556655555 379999999999999999999999999999986554 4556665 8999
Q ss_pred eEEEEEEecCC-eEEEEcCCCCEEEEeCCC---cceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCC
Q 004581 182 CIWSLLSLRCG-TLVSADSTGSVQFWDSRH---GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGP 257 (744)
Q Consensus 182 ~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~---~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 257 (744)
.|-+++|+++| +|++++.|..|-||.+.. ..++..++.|...|..+.|+|...+|++++.|.+|++|+-...
T Consensus 107 EVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d---- 182 (312)
T KOG0645|consen 107 EVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD---- 182 (312)
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCC----
Confidence 99999999999 999999999999999874 4677889999999999999999999999999999999987742
Q ss_pred CCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeE
Q 004581 258 NDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKL 337 (744)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i 337 (744)
..|.++..+.+|+..|.+++|. +.| ..|++++.|+++
T Consensus 183 ----------ddW~c~~tl~g~~~TVW~~~F~---------~~G------------------------~rl~s~sdD~tv 219 (312)
T KOG0645|consen 183 ----------DDWECVQTLDGHENTVWSLAFD---------NIG------------------------SRLVSCSDDGTV 219 (312)
T ss_pred ----------CCeeEEEEecCccceEEEEEec---------CCC------------------------ceEEEecCCcce
Confidence 4699999999999999999996 444 499999999999
Q ss_pred EEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecC
Q 004581 338 FAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKA 417 (744)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (744)
++|..... +...|
T Consensus 220 ~Iw~~~~~-------------------------------------------------------------------~~~~~ 232 (312)
T KOG0645|consen 220 SIWRLYTD-------------------------------------------------------------------LSGMH 232 (312)
T ss_pred EeeeeccC-------------------------------------------------------------------cchhc
Confidence 99975421 01112
Q ss_pred CCCeEEEEEcCCCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeC-CCEEEEEeCCCcEEEEE
Q 004581 418 SRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYD-SSQLIIAGHDRRIYVVD 495 (744)
Q Consensus 418 ~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd-~~~l~~~~~dg~i~v~d 495 (744)
...+..+++. +| .||+ +.|+.|++|.... ......|++-......|...|++++|.|. .++|++++.||.|++|.
T Consensus 233 sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~~s~-~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 233 SRALYDVPWD-NG-VIASGGGDDAIRLFKESD-SPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred ccceEeeeec-cc-ceEeccCCCEEEEEEecC-CCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 3556667777 44 4555 6999999998874 22223343333444556669999999995 78999999999999998
Q ss_pred cc
Q 004581 496 VS 497 (744)
Q Consensus 496 ~~ 497 (744)
+.
T Consensus 310 l~ 311 (312)
T KOG0645|consen 310 LE 311 (312)
T ss_pred ec
Confidence 74
No 31
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.1e-35 Score=252.54 Aligned_cols=294 Identities=18% Similarity=0.221 Sum_probs=240.4
Q ss_pred eEeecccCccCcEEEEEEecC-CCEEEEEeCCCeEEEEEccCCc---eEEEEEecCCCCCCCCceeEEEEEEecCC-eEE
Q 004581 121 IYHRSLPRVSGRVLSVTWSAD-GNMLYSGSSDGYIRSWDAKLGY---EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLV 195 (744)
Q Consensus 121 ~~~~~~~~h~~~V~~~~~s~d-g~~l~t~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~ 195 (744)
...+.+.+|.++|..++|+|- |..||||+.|+.||+|+...+. +...+.. +|...|.+++|+|.| +|+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~-------~hkrsVRsvAwsp~g~~La 77 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDD-------GHKRSVRSVAWSPHGRYLA 77 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccc-------cchheeeeeeecCCCcEEE
Confidence 344888999999999999998 8899999999999999987533 2333322 799999999999999 899
Q ss_pred EEcCCCCEEEEeCCC--cceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEE
Q 004581 196 SADSTGSVQFWDSRH--GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYV 273 (744)
Q Consensus 196 s~~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (744)
+++.|.++.||.-.. .+++.++.+|...|.|++|+++|++|++++.|..|-+|.+.... .+.+.
T Consensus 78 ~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd--------------Efec~ 143 (312)
T KOG0645|consen 78 SASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD--------------EFECI 143 (312)
T ss_pred EeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC--------------cEEEE
Confidence 999999999997654 47889999999999999999999999999999999999988543 47788
Q ss_pred eeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCccc
Q 004581 274 GSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEI 353 (744)
Q Consensus 274 ~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~ 353 (744)
..++.|+++|..+.|. |...+|++++.|.+|++|.-....
T Consensus 144 aVL~~HtqDVK~V~WH---------------------------------Pt~dlL~S~SYDnTIk~~~~~~dd------- 183 (312)
T KOG0645|consen 144 AVLQEHTQDVKHVIWH---------------------------------PTEDLLFSCSYDNTIKVYRDEDDD------- 183 (312)
T ss_pred eeeccccccccEEEEc---------------------------------CCcceeEEeccCCeEEEEeecCCC-------
Confidence 9999999999999994 444599999999999999754200
Q ss_pred CCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEE
Q 004581 354 CPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLF 433 (744)
Q Consensus 354 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 433 (744)
.
T Consensus 184 -----------------------------------------------------------------d-------------- 184 (312)
T KOG0645|consen 184 -----------------------------------------------------------------D-------------- 184 (312)
T ss_pred -----------------------------------------------------------------C--------------
Confidence 0
Q ss_pred EEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCccccc
Q 004581 434 AYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHD 513 (744)
Q Consensus 434 a~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~ 513 (744)
|... ..+.+|...+.+++|++.|.+|++++.|++|+||.+. ..+...
T Consensus 185 ----------------------W~c~-~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~-----~~~~~~----- 231 (312)
T KOG0645|consen 185 ----------------------WECV-QTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY-----TDLSGM----- 231 (312)
T ss_pred ----------------------eeEE-EEecCccceEEEEEecCCCceEEEecCCcceEeeeec-----cCcchh-----
Confidence 0000 2344455578899999999999999999999999965 222222
Q ss_pred ccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCc------ceEEEEecCCCCceeEEeecCCCCCeEEEEecCCe
Q 004581 514 REIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ------RQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQ 587 (744)
Q Consensus 514 ~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~------~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~ 587 (744)
|...+..+.|. ...||+++.|+.|++|.-... +........|...|++++|+|.-.+.|++++.||.
T Consensus 232 -----~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~ 304 (312)
T KOG0645|consen 232 -----HSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGI 304 (312)
T ss_pred -----cccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCce
Confidence 78899999998 458999999999999987642 12222445677899999999944789999999999
Q ss_pred EEEEEcC
Q 004581 588 VYVFDVE 594 (744)
Q Consensus 588 v~vwd~~ 594 (744)
|++|.+.
T Consensus 305 v~~W~l~ 311 (312)
T KOG0645|consen 305 VNFWELE 311 (312)
T ss_pred EEEEEec
Confidence 9999875
No 32
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.4e-35 Score=260.32 Aligned_cols=293 Identities=17% Similarity=0.281 Sum_probs=248.1
Q ss_pred EEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCCe
Q 004581 29 IVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGC 108 (744)
Q Consensus 29 ~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~ 108 (744)
..+.+|.+.|..+.|+|+| .+||+|+.|..
T Consensus 41 m~l~gh~geI~~~~F~P~g--------------------------------------------------s~~aSgG~Dr~ 70 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDG--------------------------------------------------SCFASGGSDRA 70 (338)
T ss_pred hhcCCCcceEEEEEECCCC--------------------------------------------------CeEeecCCcce
Confidence 3577999999999999999 69999999999
Q ss_pred EEEEEecCC-CceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEE
Q 004581 109 VRIYRITDS-DELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLL 187 (744)
Q Consensus 109 i~iwd~~~~-~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 187 (744)
|.+|++... +.. ..+++|.+.|..+.|.+|+..|++++.|.+|+.||+++|+++++++ +|...|.++.
T Consensus 71 I~LWnv~gdceN~---~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k--------~h~~~vNs~~ 139 (338)
T KOG0265|consen 71 IVLWNVYGDCENF---WVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK--------GHTSFVNSLD 139 (338)
T ss_pred EEEEeccccccce---eeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhc--------cccceeeecC
Confidence 999998632 333 7788999999999999999999999999999999999999999998 7999999999
Q ss_pred EecCC--eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCccc
Q 004581 188 SLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSE 265 (744)
Q Consensus 188 ~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 265 (744)
-+.-| ++.+++.|+++++||+++...++++.. .-.++++.|..++..+++|+-|+.|++||++.+..
T Consensus 140 p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~---------- 208 (338)
T KOG0265|consen 140 PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG---------- 208 (338)
T ss_pred ccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeeccccCceeeeccccCcc----------
Confidence 66666 678899999999999999888888864 67899999999999999999999999999988763
Q ss_pred ccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCcc
Q 004581 266 VIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEF 345 (744)
Q Consensus 266 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~ 345 (744)
...+.+|...|+.+..+ +++. .+.+-+.|.++++||.+.+
T Consensus 209 -------~~~lsGh~DtIt~lsls---------~~gs------------------------~llsnsMd~tvrvwd~rp~ 248 (338)
T KOG0265|consen 209 -------LYTLSGHADTITGLSLS---------RYGS------------------------FLLSNSMDNTVRVWDVRPF 248 (338)
T ss_pred -------eEEeecccCceeeEEec---------cCCC------------------------ccccccccceEEEEEeccc
Confidence 78889999999999997 5655 8999999999999999753
Q ss_pred CCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEE
Q 004581 346 TKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICST 425 (744)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 425 (744)
..-
T Consensus 249 ~p~----------------------------------------------------------------------------- 251 (338)
T KOG0265|consen 249 APS----------------------------------------------------------------------------- 251 (338)
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 210
Q ss_pred EcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeee
Q 004581 426 ISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTF 505 (744)
Q Consensus 426 ~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~ 505 (744)
.+.+. +|.- .. ..+. ......+|||+++++.+|+.|..+++||......+..+
T Consensus 252 ----~R~v~--------if~g-----~~-------hnfe---knlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl 304 (338)
T KOG0265|consen 252 ----QRCVK--------IFQG-----HI-------HNFE---KNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL 304 (338)
T ss_pred ----CceEE--------Eeec-----ch-------hhhh---hhcceeeccCCCCccccccccceEEEeecccccEEEEc
Confidence 00000 0000 00 0000 02345679999999999999999999999888899999
Q ss_pred ccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEE
Q 004581 506 TPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFN 548 (744)
Q Consensus 506 ~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd 548 (744)
.+ |.+.|.+++|+|...+|.+++.|.+|++=.
T Consensus 305 pG-----------h~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 305 PG-----------HYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred CC-----------cceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 99 999999999999999999999999998743
No 33
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2.4e-34 Score=280.34 Aligned_cols=508 Identities=18% Similarity=0.182 Sum_probs=340.0
Q ss_pred eEEecCCCeEEEEEccC--CceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCC
Q 004581 8 LFSSSIDGSVSEWDLYD--LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD 85 (744)
Q Consensus 8 l~~~~~d~~i~iwd~~~--~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (744)
|+.|+.+..|.++.-.+ .+.+..+.||...|.+++|...+.
T Consensus 162 la~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~------------------------------------- 204 (764)
T KOG1063|consen 162 LACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG------------------------------------- 204 (764)
T ss_pred EEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC-------------------------------------
Confidence 67788888888887653 456778999999999999998773
Q ss_pred cccccccccccCCeEEEEecCCeEEEEEecCCC------------------------ceeE----eecccCccCcEEEEE
Q 004581 86 SDELHEQSVVEDRRVALACDDGCVRIYRITDSD------------------------ELIY----HRSLPRVSGRVLSVT 137 (744)
Q Consensus 86 ~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~------------------------~~~~----~~~~~~h~~~V~~~~ 137 (744)
+.-+||+++.|..||||.+.-+. .+.+ ...+.||++.|.++.
T Consensus 205 ----------~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~ 274 (764)
T KOG1063|consen 205 ----------DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVW 274 (764)
T ss_pred ----------CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEE
Confidence 11389999999999999986222 1111 133459999999999
Q ss_pred EecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCC---cce
Q 004581 138 WSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH---GTL 213 (744)
Q Consensus 138 ~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~---~~~ 213 (744)
|+|++..|++++.|.++.+|...+..-+..-....+... +.....+...|+|++ .+++-+..|..++|..+. -.+
T Consensus 275 W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g-g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~ 353 (764)
T KOG1063|consen 275 WHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVG-GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQ 353 (764)
T ss_pred EccchhhheecccCcceEEEecCCccceEEEEEEeeccc-ccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceee
Confidence 999999999999999999998766544443333333322 456678999999999 788889999999998332 234
Q ss_pred EEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCC
Q 004581 214 LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPIS 293 (744)
Q Consensus 214 ~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 293 (744)
...+.+|.+.|..++|+|.|.+|++.+.|.+-|+|-.-..+ ..|-.+..-+.|.++++|+++-
T Consensus 354 ~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q-------------~~wHEiaRPQiHGyDl~c~~~v---- 416 (764)
T KOG1063|consen 354 EPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQ-------------QEWHEIARPQIHGYDLTCLSFV---- 416 (764)
T ss_pred ccccccccccceeeeecCCCCEEEEeccccceeeecccccc-------------cceeeecccccccccceeeehc----
Confidence 45678999999999999999999999999999999766333 3488888888999999999985
Q ss_pred CCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccC-----CCCCcccCCCCCCCccccccce
Q 004581 294 REDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT-----KFSPHEICPAPQRVPIHLVHNT 368 (744)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~ 368 (744)
+. .-.+++|.....+|+|+....- .+...........+....+..+
T Consensus 417 -----n~------------------------~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaL 467 (764)
T KOG1063|consen 417 -----NE------------------------DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPAL 467 (764)
T ss_pred -----cC------------------------CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccc
Confidence 21 1279999999999999886310 0000000000000111122222
Q ss_pred eecCCeEEE-EEeCC-e-EEEEEeecc-CCcccCCCC-C----CCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEc--
Q 004581 369 IFSHTSLLL-VQYSC-R-LDILSVRLE-NNVESRSSS-G----GHASTSLLVQVKSKASRKIICSTISNSGMLFAYSD-- 437 (744)
Q Consensus 369 ~~s~~~~~l-~~~~~-~-i~i~~~~~~-~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~-- 437 (744)
-.|..-.+. .+..+ . ..-...... .......+. . .+.-...+.+ -.+|...|.+++.+|+|+++|++.
T Consensus 468 GLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~K-LYGHGyEv~~l~~s~~gnliASaCKS 546 (764)
T KOG1063|consen 468 GLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHK-LYGHGYEVYALAISPTGNLIASACKS 546 (764)
T ss_pred cccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHH-hccCceeEEEEEecCCCCEEeehhhh
Confidence 222211111 11111 0 000111000 000000000 0 0000011111 146778999999999999999942
Q ss_pred ----CCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCc-eeeeeccCcccc
Q 004581 438 ----HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE-LLHTFTPCREEH 512 (744)
Q Consensus 438 ----~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~~ 512 (744)
...|++|+..+ |.. ...+..|.-.|+.++|||||++|++.+.|.++.+|...... .-..|..
T Consensus 547 ~~~ehAvI~lw~t~~-------W~~-~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~----- 613 (764)
T KOG1063|consen 547 SLKEHAVIRLWNTAN-------WLQ-VQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFAC----- 613 (764)
T ss_pred CCccceEEEEEeccc-------hhh-hheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhcc-----
Confidence 23577887754 222 14688888899999999999999999999999999985332 1112111
Q ss_pred cccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCc--ceEEE-EecCCCCceeEEeecCCC----CCeEEEEecC
Q 004581 513 DREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ--RQHWF-ISRLEGASVTAAGFPPQN----NNVLIITTSS 585 (744)
Q Consensus 513 ~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~--~~~~~-~~~~~~~~v~~l~~sp~~----~~~l~~~~~d 585 (744)
...|..-|.+..|+|+++++||+|.|.+|+||..... +.... ....++.+|++++|.|-+ +..+++|-..
T Consensus 614 ---~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~ 690 (764)
T KOG1063|consen 614 ---LKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEK 690 (764)
T ss_pred ---ccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecc
Confidence 2239999999999999999999999999999999877 33222 112245799999998833 3378889999
Q ss_pred CeEEEEEcCCCccccccccccCCc---ccccccCCCceEEEEeCCC
Q 004581 586 NQVYVFDVEAKQLGEWSMQHTFVL---PRRYQEFPGEVIGLSFSPS 628 (744)
Q Consensus 586 ~~v~vwd~~~~~~~~ws~~~~~~~---~~~~~~~~~~v~~i~fspd 628 (744)
|.|.+|......-.. ......+ .....++.+.|..+.|+|-
T Consensus 691 GeI~l~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~aV~rl~w~p~ 734 (764)
T KOG1063|consen 691 GEIVLWRRKREHRQV--TVGTFNLDTRLCATIGPDSAVNRLLWRPT 734 (764)
T ss_pred cEEEEEecccccccc--cceeeeeccccccccChHHhhheeEeccc
Confidence 999999965211000 0011111 1223445688999999984
No 34
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-33 Score=282.76 Aligned_cols=454 Identities=14% Similarity=0.139 Sum_probs=321.1
Q ss_pred CCCCCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccC
Q 004581 1 MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSES 80 (744)
Q Consensus 1 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (744)
++|.-.+++++-..|.|.+||..-+.++..|..|.++|..++|+|++
T Consensus 17 FHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~q--------------------------------- 63 (1202)
T KOG0292|consen 17 FHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQ--------------------------------- 63 (1202)
T ss_pred cCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCC---------------------------------
Confidence 45677889999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 004581 81 ENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAK 160 (744)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~ 160 (744)
.++++|++|..|++|+..+.+.+ .+|.||-..|..+.|++.-.+++++|.|.+|+||+..
T Consensus 64 -----------------plFVSGGDDykIkVWnYk~rrcl---ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq 123 (1202)
T KOG0292|consen 64 -----------------PLFVSGGDDYKIKVWNYKTRRCL---FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ 123 (1202)
T ss_pred -----------------CeEEecCCccEEEEEecccceeh---hhhccccceeEEeeccCCCceEEEccCCCeEEEEecc
Confidence 69999999999999999877777 8999999999999999999999999999999999999
Q ss_pred CCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCC--------c--------c-----------
Q 004581 161 LGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH--------G--------T----------- 212 (744)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~--------~--------~----------- 212 (744)
++.++..++ +|...|.|..|+|.. .+++++-|.+|+|||+.. + .
T Consensus 124 sr~~iavlt--------GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~D 195 (1202)
T KOG0292|consen 124 SRKCIAVLT--------GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTD 195 (1202)
T ss_pred CCceEEEEe--------cCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcC
Confidence 999999999 899999999999966 999999999999999852 1 0
Q ss_pred --eEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeec
Q 004581 213 --LLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAV 290 (744)
Q Consensus 213 --~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 290 (744)
..+.+.+|...|+-++|+|.-..|++|+.|..|++|.+.... .|. +.+.++|.+.|.++-|.
T Consensus 196 aVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK--------------aWE-vDtcrgH~nnVssvlfh- 259 (1202)
T KOG0292|consen 196 AVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK--------------AWE-VDTCRGHYNNVSSVLFH- 259 (1202)
T ss_pred eeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc--------------cee-ehhhhcccCCcceEEec-
Confidence 124578999999999999999999999999999999998643 454 46778999999999994
Q ss_pred cCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceee
Q 004581 291 PISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIF 370 (744)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 370 (744)
|..++++|.|.|++|++||+...+..+.+. ......+.++.
T Consensus 260 --------------------------------p~q~lIlSnsEDksirVwDm~kRt~v~tfr-------rendRFW~laa 300 (1202)
T KOG0292|consen 260 --------------------------------PHQDLILSNSEDKSIRVWDMTKRTSVQTFR-------RENDRFWILAA 300 (1202)
T ss_pred --------------------------------CccceeEecCCCccEEEEecccccceeeee-------ccCCeEEEEEe
Confidence 455699999999999999998766544332 12256677777
Q ss_pred cCCeEEEEEe-CCeEEEEEeeccCCc-ccCCCCCCCCCcc-------------eEEEEEecC--CCCeEEEEEcCCCCEE
Q 004581 371 SHTSLLLVQY-SCRLDILSVRLENNV-ESRSSSGGHASTS-------------LLVQVKSKA--SRKIICSTISNSGMLF 433 (744)
Q Consensus 371 s~~~~~l~~~-~~~i~i~~~~~~~~~-~~~~~~~~~~~~~-------------~~~~~~~~~--~~~i~~~~~s~~g~~l 433 (744)
.|...+++.+ ++.+.++.+...... .......-..+.+ .+..+...+ ..+..++.++|....+
T Consensus 301 hP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~v 380 (1202)
T KOG0292|consen 301 HPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAV 380 (1202)
T ss_pred cCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeE
Confidence 8877766654 456666666532211 0000000000011 122222221 2566788888876655
Q ss_pred EEE---cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcc
Q 004581 434 AYS---DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCRE 510 (744)
Q Consensus 434 a~~---~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 510 (744)
..+ ..+..-++.+.....+..- . +.... ..+. ...|-..+++.+.--.+..+.+=++.+ +..+.+..
T Consensus 381 lics~~~n~~y~L~~ipk~~~~~~~--~-~~~~k--~tG~-~a~fvarNrfavl~k~~~~v~ik~l~N-~vtkkl~~--- 450 (1202)
T KOG0292|consen 381 LICSNLDNGEYELVQIPKDSDGVSD--G-KDVKK--GTGE-GALFVARNRFAVLDKSNEQVVIKNLKN-KVTKKLLL--- 450 (1202)
T ss_pred EEEeccCCCeEEEEEecCcccccCC--c-hhhhc--CCCC-ceEEEEecceEEEEecCcceEEecccc-hhhhcccC---
Confidence 444 4444445555431111100 0 00000 0122 222322333333333345565555542 22333332
Q ss_pred cccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEE
Q 004581 511 EHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYV 590 (744)
Q Consensus 511 ~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~v 590 (744)
...+-.+-+.-+|.+|+.. ...|.+||++..+....++. ..+.-+.||+ |..+++.-+ -.+|.|
T Consensus 451 ---------~~~~~~IF~ag~g~lll~~--~~~v~lfdvQq~~~~~si~~---s~vkyvvws~-dm~~vAll~-Kh~i~i 514 (1202)
T KOG0292|consen 451 ---------PESTDDIFYAGTGNLLLRS--PDSVTLFDVQQKKKVGSIKV---SKVKYVVWSN-DMSRVALLS-KHTITI 514 (1202)
T ss_pred ---------cccccceeeccCccEEEEc--CCeEEEEEeecceEEEEEec---CceeEEEEcC-ccchhhhcc-cceEEE
Confidence 2334556666677766553 34599999998887777753 4788899998 877766655 456777
Q ss_pred EEcCCC
Q 004581 591 FDVEAK 596 (744)
Q Consensus 591 wd~~~~ 596 (744)
.|.+-.
T Consensus 515 ~~kkL~ 520 (1202)
T KOG0292|consen 515 ADKKLE 520 (1202)
T ss_pred Eecchh
Confidence 775533
No 35
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-35 Score=267.87 Aligned_cols=326 Identities=15% Similarity=0.169 Sum_probs=272.0
Q ss_pred eEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCC
Q 004581 99 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSG 178 (744)
Q Consensus 99 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 178 (744)
-++.|.--+..+..+.--. .......+.+|..+|+.+-|+|+-..+++++.|++|++||..+|+....++ +
T Consensus 78 el~~g~pt~~~~~~~~wip-Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~Lr--------G 148 (406)
T KOG0295|consen 78 ELIAGDPTGSKRTPALWIP-RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLR--------G 148 (406)
T ss_pred ccccCCCCcCccChhhcCC-CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhh--------c
Confidence 4555555555555444311 112227788999999999999999999999999999999999999988888 7
Q ss_pred CceeEEEEEEecCC-eEEEEcCCCCEEEEeCCC-cceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCC
Q 004581 179 PELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH-GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 256 (744)
Q Consensus 179 ~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 256 (744)
|...+..++|...| ++++++.|-.+++||.++ .+++..+.+|...|.+++|-|.|.+|++++.|.+|+.|++.++-
T Consensus 149 Ht~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~-- 226 (406)
T KOG0295|consen 149 HTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY-- 226 (406)
T ss_pred cccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccce--
Confidence 99999999999999 899999999999999987 67888999999999999999999999999999999999999987
Q ss_pred CCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCe
Q 004581 257 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK 336 (744)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~ 336 (744)
++..+.+|...|+.+... .||. ++++++.|.+
T Consensus 227 ---------------cv~t~~~h~ewvr~v~v~---------~DGt------------------------i~As~s~dqt 258 (406)
T KOG0295|consen 227 ---------------CVKTFPGHSEWVRMVRVN---------QDGT------------------------IIASCSNDQT 258 (406)
T ss_pred ---------------eEEeccCchHhEEEEEec---------CCee------------------------EEEecCCCce
Confidence 588999999999999986 5555 9999999999
Q ss_pred EEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEec
Q 004581 337 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK 416 (744)
Q Consensus 337 i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (744)
|++|-..+..-. ..-..
T Consensus 259 l~vW~~~t~~~k---------------------------------------------------------------~~lR~ 275 (406)
T KOG0295|consen 259 LRVWVVATKQCK---------------------------------------------------------------AELRE 275 (406)
T ss_pred EEEEEeccchhh---------------------------------------------------------------hhhhc
Confidence 999988764211 01123
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEc
Q 004581 417 ASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDV 496 (744)
Q Consensus 417 ~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~ 496 (744)
|...+.|++|.|...+=.+.. . .+ . ...+.++++++.|++|++||+
T Consensus 276 hEh~vEci~wap~~~~~~i~~-----------------------a--t~---~------~~~~~~l~s~SrDktIk~wdv 321 (406)
T KOG0295|consen 276 HEHPVECIAWAPESSYPSISE-----------------------A--TG---S------TNGGQVLGSGSRDKTIKIWDV 321 (406)
T ss_pred cccceEEEEecccccCcchhh-----------------------c--cC---C------CCCccEEEeecccceEEEEec
Confidence 446678888877542110000 0 00 0 015679999999999999999
Q ss_pred cCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCC
Q 004581 497 SSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNN 576 (744)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~ 576 (744)
.+|.++.++.+ |...|..++|+|.|+||+++.+|+++++||+++.++...++ .|..-+++++|+. +.
T Consensus 322 ~tg~cL~tL~g-----------hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~-ah~hfvt~lDfh~-~~ 388 (406)
T KOG0295|consen 322 STGMCLFTLVG-----------HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE-AHEHFVTSLDFHK-TA 388 (406)
T ss_pred cCCeEEEEEec-----------ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC-CCcceeEEEecCC-CC
Confidence 99999999999 99999999999999999999999999999999999988887 5667899999999 88
Q ss_pred CeEEEEecCCeEEEEEc
Q 004581 577 NVLIITTSSNQVYVFDV 593 (744)
Q Consensus 577 ~~l~~~~~d~~v~vwd~ 593 (744)
.++++|+-|.++++|.-
T Consensus 389 p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 389 PYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ceEEeccccceeeeeec
Confidence 89999999999999963
No 36
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.7e-36 Score=272.40 Aligned_cols=295 Identities=17% Similarity=0.236 Sum_probs=242.1
Q ss_pred eEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCC
Q 004581 28 KIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDG 107 (744)
Q Consensus 28 ~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg 107 (744)
.+.+..|...||-+.||++| ++||+++.|.
T Consensus 217 ~qil~~htdEVWfl~FS~nG--------------------------------------------------kyLAsaSkD~ 246 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNG--------------------------------------------------KYLASASKDS 246 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCC--------------------------------------------------eeEeeccCCc
Confidence 34577899999999999999 6999999999
Q ss_pred eEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEE
Q 004581 108 CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLL 187 (744)
Q Consensus 108 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 187 (744)
+..||++.....+...+++.+|..+|..+.||||.++|++|+.|..+++||+.+|...+.+.. ++...+.+++
T Consensus 247 Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~-------~~~~S~~sc~ 319 (519)
T KOG0293|consen 247 TAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS-------GLGFSVSSCA 319 (519)
T ss_pred eEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhccc-------CcCCCcceeE
Confidence 999999987777888899999999999999999999999999999999999999999988874 4678899999
Q ss_pred EecCC-eEEEEcCCCCEEEEeCCCcceEEEeecc-ccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCccc
Q 004581 188 SLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFH-KGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSE 265 (744)
Q Consensus 188 ~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 265 (744)
|.||| .+++|+.|++|..||++ |..+...++- ...|.+++.++||+++++.+.|..|++++......
T Consensus 320 W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d---------- 388 (519)
T KOG0293|consen 320 WCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD---------- 388 (519)
T ss_pred EccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh----------
Confidence 99999 89999999999999998 6665555543 24577777777777777777776666666544210
Q ss_pred ccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCcc
Q 004581 266 VIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEF 345 (744)
Q Consensus 266 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~ 345 (744)
T Consensus 389 -------------------------------------------------------------------------------- 388 (519)
T KOG0293|consen 389 -------------------------------------------------------------------------------- 388 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEE
Q 004581 346 TKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICST 425 (744)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 425 (744)
T Consensus 389 -------------------------------------------------------------------------------- 388 (519)
T KOG0293|consen 389 -------------------------------------------------------------------------------- 388 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeee
Q 004581 426 ISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTF 505 (744)
Q Consensus 426 ~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~ 505 (744)
..+.....+++++.+|.|++++++.-.+..+++||++..++++.+
T Consensus 389 -----------------------------------r~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY 433 (519)
T KOG0293|consen 389 -----------------------------------RGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKY 433 (519)
T ss_pred -----------------------------------hccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHh
Confidence 000001116777778888888888888889999999988999999
Q ss_pred ccCcccccccCCCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEec
Q 004581 506 TPCREEHDREIQPSEPPITKMFTSS-DGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTS 584 (744)
Q Consensus 506 ~~~~~~~~~~~~~~~~~i~~l~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~ 584 (744)
.+++. ..-|-.-||-- +..++|+|+.|+.|+||+..+++++..+.+ |...|++++|+|.+..++|+|++
T Consensus 434 ~Ghkq---------~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG-Hs~~vNcVswNP~~p~m~ASasD 503 (519)
T KOG0293|consen 434 FGHKQ---------GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG-HSKTVNCVSWNPADPEMFASASD 503 (519)
T ss_pred hcccc---------cceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC-CcceeeEEecCCCCHHHhhccCC
Confidence 88422 12233345544 558999999999999999999999999976 67899999999999999999999
Q ss_pred CCeEEEEEcCC
Q 004581 585 SNQVYVFDVEA 595 (744)
Q Consensus 585 d~~v~vwd~~~ 595 (744)
||+|+||....
T Consensus 504 DgtIRIWg~~~ 514 (519)
T KOG0293|consen 504 DGTIRIWGPSD 514 (519)
T ss_pred CCeEEEecCCc
Confidence 99999998763
No 37
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9.5e-37 Score=278.52 Aligned_cols=275 Identities=18% Similarity=0.279 Sum_probs=237.7
Q ss_pred CCCCCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccC
Q 004581 1 MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSES 80 (744)
Q Consensus 1 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (744)
|.|.|.+|++|+..|.+.+|+..+..-...++.|..+|.+|.|+++|
T Consensus 104 WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g--------------------------------- 150 (464)
T KOG0284|consen 104 WTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNG--------------------------------- 150 (464)
T ss_pred EcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCC---------------------------------
Confidence 67889999999999999999987655555678999999999999999
Q ss_pred CCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCcc-CcEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 004581 81 ENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVS-GRVLSVTWSADGNMLYSGSSDGYIRSWDA 159 (744)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~V~~~~~s~dg~~l~t~~~dg~i~vwd~ 159 (744)
.++++|..+|.|++|+.. -..+ +.+.+|. ..|++++|||+...++|++.||+|+|||.
T Consensus 151 -----------------~wmiSgD~gG~iKyWqpn-mnnV---k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf 209 (464)
T KOG0284|consen 151 -----------------TWMISGDKGGMIKYWQPN-MNNV---KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDF 209 (464)
T ss_pred -----------------CEEEEcCCCceEEecccc-hhhh---HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEec
Confidence 699999999999999986 3333 5566555 99999999999999999999999999999
Q ss_pred cCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEe
Q 004581 160 KLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFS 238 (744)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~ 238 (744)
...+....+. +|.-.|.++.|+|.. .|++|+.|+.|++||.++|+++.++.+|...|..+.|++++++|++
T Consensus 210 ~~~kee~vL~--------GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt 281 (464)
T KOG0284|consen 210 RMPKEERVLR--------GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLT 281 (464)
T ss_pred cCCchhheec--------cCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEE
Confidence 8888877777 899999999999987 9999999999999999999999999999999999999999999999
Q ss_pred ecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcccccc
Q 004581 239 TGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYH 318 (744)
Q Consensus 239 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (744)
++.|..++++|++.... +..+++|..+|+++++. |
T Consensus 282 ~skD~~~kv~DiR~mkE-----------------l~~~r~Hkkdv~~~~Wh---------P------------------- 316 (464)
T KOG0284|consen 282 GSKDQSCKVFDIRTMKE-----------------LFTYRGHKKDVTSLTWH---------P------------------- 316 (464)
T ss_pred ccCCceEEEEehhHhHH-----------------HHHhhcchhhheeeccc---------c-------------------
Confidence 99999999999996542 67889999999999987 2
Q ss_pred ccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccC
Q 004581 319 KWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESR 398 (744)
Q Consensus 319 ~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~ 398 (744)
-...+|.+|+.||.|..|.+....
T Consensus 317 ----~~~~lftsgg~Dgsvvh~~v~~~~---------------------------------------------------- 340 (464)
T KOG0284|consen 317 ----LNESLFTSGGSDGSVVHWVVGLEE---------------------------------------------------- 340 (464)
T ss_pred ----ccccceeeccCCCceEEEeccccc----------------------------------------------------
Confidence 223489999999999999886211
Q ss_pred CCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeec
Q 004581 399 SSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKK 448 (744)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~ 448 (744)
.+..+...|...|.+++++|=|.+|+++ .|.++++|.-..
T Consensus 341 ----------p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 341 ----------PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred ----------cccCCCcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence 1222334566788899999999999995 788888887654
No 38
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.2e-36 Score=282.56 Aligned_cols=291 Identities=17% Similarity=0.218 Sum_probs=244.9
Q ss_pred ceeEEeeccCcceeEEeecc-CCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEe
Q 004581 26 KQKIVLQSIDFSIWQMAVAP-SNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC 104 (744)
Q Consensus 26 ~~~~~~~~h~~~i~~v~~sp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 104 (744)
+.+.++.+|...|+++.|.| .+ .+|++++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~--------------------------------------------------hLlLS~g 234 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKG--------------------------------------------------HLLLSGG 234 (503)
T ss_pred hheeeccCCccccchhhhcccee--------------------------------------------------eEEEecC
Confidence 56678999999999999999 55 5899999
Q ss_pred cCCeEEEEEecC-CCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeE
Q 004581 105 DDGCVRIYRITD-SDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCI 183 (744)
Q Consensus 105 ~dg~i~iwd~~~-~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v 183 (744)
-|+.|+||++.. ++.+ +++.+|..+|..++|+++|..++|++.|+.|++||+++|+++.++. ....+
T Consensus 235 mD~~vklW~vy~~~~~l---rtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~---------~~~~~ 302 (503)
T KOG0282|consen 235 MDGLVKLWNVYDDRRCL---RTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH---------LDKVP 302 (503)
T ss_pred CCceEEEEEEecCccee---hhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe---------cCCCc
Confidence 999999999985 4444 9999999999999999999999999999999999999999999997 56778
Q ss_pred EEEEEecCC--eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCC
Q 004581 184 WSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGL 261 (744)
Q Consensus 184 ~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 261 (744)
+++.|.|++ .+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|.++++.+.|+++++|+......
T Consensus 303 ~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~------ 376 (503)
T KOG0282|consen 303 TCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP------ 376 (503)
T ss_pred eeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc------
Confidence 999999998 799999999999999999999999999999999999999999999999999999999876431
Q ss_pred CcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEe
Q 004581 262 SSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYC 341 (744)
Q Consensus 262 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~ 341 (744)
+. -++.
T Consensus 377 -----------ik----------~i~~----------------------------------------------------- 382 (503)
T KOG0282|consen 377 -----------IK----------NIAD----------------------------------------------------- 382 (503)
T ss_pred -----------ch----------hhcc-----------------------------------------------------
Confidence 00 0000
Q ss_pred cCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCe
Q 004581 342 ANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKI 421 (744)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 421 (744)
.+....
T Consensus 383 --------------------------------------------------------------------------~~~hsm 388 (503)
T KOG0282|consen 383 --------------------------------------------------------------------------PEMHTM 388 (503)
T ss_pred --------------------------------------------------------------------------hhhccC
Confidence 000223
Q ss_pred EEEEEcCCCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccc--cccEEEEeeCCCEEEEEeCCCcEEEEEccC
Q 004581 422 ICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQ--FAHSMIFSYDSSQLIIAGHDRRIYVVDVSS 498 (744)
Q Consensus 422 ~~~~~s~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~i~~spd~~~l~~~~~dg~i~v~d~~~ 498 (744)
.+++.+|+++++++ +-++.+.+|.+...... -.+..+.+|.. ..+.+.|||||.+|++|+.||.+.+||..+
T Consensus 389 P~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~-----nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 389 PCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRL-----NKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred cceecCCCCCeehhhccCceEEEEeccccccc-----CHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechh
Confidence 45667788888777 67778888876541111 11244555543 677889999999999999999999999999
Q ss_pred CceeeeeccCcccccccCCCCCCceEEEEECCCC-CEEEEEeCCCcEEEEE
Q 004581 499 SELLHTFTPCREEHDREIQPSEPPITKMFTSSDG-QWLAAVNCFGDVYIFN 548 (744)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg-~~las~~~dg~i~iwd 548 (744)
-+++..++. |...+..+.|+|.. ..+|+++.||.|++|+
T Consensus 464 ~kl~~~lka-----------h~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 464 TKLVSKLKA-----------HDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhhhhcccc-----------CCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999998 89999999999954 4789999999999996
No 39
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-32 Score=275.30 Aligned_cols=438 Identities=13% Similarity=0.175 Sum_probs=308.9
Q ss_pred CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCC
Q 004581 98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS 177 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 177 (744)
.++.++-..|.|++||..-+..+ ..|..|.++|..++|+|++.++++|+.|..|+||+..+.+++.++.
T Consensus 22 PwILtslHsG~IQlWDYRM~tli---~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~-------- 90 (1202)
T KOG0292|consen 22 PWILTSLHSGVIQLWDYRMGTLI---DRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLL-------- 90 (1202)
T ss_pred CEEEEeecCceeeeehhhhhhHH---hhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhc--------
Confidence 68999999999999999866655 8999999999999999999999999999999999999999999998
Q ss_pred CCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCC
Q 004581 178 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 256 (744)
Q Consensus 178 ~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 256 (744)
+|-..|..+.|++.- .|++++.|.+|+||+..+++++..+++|..-|.|..|+|....+++++.|.+|++||+..-...
T Consensus 91 GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk 170 (1202)
T KOG0292|consen 91 GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKK 170 (1202)
T ss_pred cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhcc
Confidence 899999999999988 9999999999999999999999999999999999999999999999999999999999764321
Q ss_pred CC------CCCCc------ccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCC
Q 004581 257 PN------DGLSS------SEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLG 324 (744)
Q Consensus 257 ~~------~~~~~------~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 324 (744)
.. +.... ......-.....+.+|...|.-.+|. |.
T Consensus 171 ~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh---------------------------------pT 217 (1202)
T KOG0292|consen 171 NKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH---------------------------------PT 217 (1202)
T ss_pred CCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec---------------------------------CC
Confidence 00 00000 01112334455678898888888884 45
Q ss_pred CcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEe--CCeEEEEEeeccCCcccCCCCC
Q 004581 325 VPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY--SCRLDILSVRLENNVESRSSSG 402 (744)
Q Consensus 325 ~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~~i~i~~~~~~~~~~~~~~~~ 402 (744)
.++++||+.|..|++|.+...+.... ...+.|.+.|.++.|+|...++.+. +..+++|++....
T Consensus 218 lpliVSG~DDRqVKlWrmnetKaWEv-----DtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt--------- 283 (1202)
T KOG0292|consen 218 LPLIVSGADDRQVKLWRMNETKAWEV-----DTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT--------- 283 (1202)
T ss_pred cceEEecCCcceeeEEEeccccceee-----hhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc---------
Confidence 56999999999999999987543321 2345677899999999987777765 4599999999766
Q ss_pred CCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEE
Q 004581 403 GHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQL 482 (744)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l 482 (744)
.+..+... ..+...++.+|..+++|+|-|+.+.+|.++. .. ++ .+. .++.|
T Consensus 284 ------~v~tfrre-ndRFW~laahP~lNLfAAgHDsGm~VFkleR---Er---------------pa--~~v--~~n~L 334 (1202)
T KOG0292|consen 284 ------SVQTFRRE-NDRFWILAAHPELNLFAAGHDSGMIVFKLER---ER---------------PA--YAV--NGNGL 334 (1202)
T ss_pred ------ceeeeecc-CCeEEEEEecCCcceeeeecCCceEEEEEcc---cC---------------ce--EEE--cCCEE
Confidence 34444433 4778899999999999999998888888753 11 12 122 34444
Q ss_pred EEEeCCCcEEEEEccCCce--eeeeccCcccccccCCCCCCceEEEEECCCCCEEE-EEeCC-CcEEEEECCCcceEE-E
Q 004581 483 IIAGHDRRIYVVDVSSSEL--LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLA-AVNCF-GDVYIFNLEIQRQHW-F 557 (744)
Q Consensus 483 ~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~la-s~~~d-g~i~iwd~~~~~~~~-~ 557 (744)
...- |..|+-+|+.+.+- +..+.... ....++.++.++|..+.+. +.+.+ |.-.++.+.....-. .
T Consensus 335 fYvk-d~~i~~~d~~t~~d~~v~~lr~~g--------~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~ 405 (1202)
T KOG0292|consen 335 FYVK-DRFIRSYDLRTQKDTAVASLRRPG--------TLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSD 405 (1202)
T ss_pred EEEc-cceEEeeeccccccceeEeccCCC--------cccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCC
Confidence 4444 88899999987543 33333311 1346788999999766444 43333 344444443221000 0
Q ss_pred Eec-CCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCCCCCcEEEE
Q 004581 558 ISR-LEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVII 636 (744)
Q Consensus 558 ~~~-~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~ 636 (744)
.+. ..+....+ .|-. .+++.+.--.+.++.+=++.+... +.+. ....+..|.+.-.|+ +++
T Consensus 406 ~~~~~k~tG~~a-~fva-rNrfavl~k~~~~v~ik~l~N~vt------------kkl~-~~~~~~~IF~ag~g~---lll 467 (1202)
T KOG0292|consen 406 GKDVKKGTGEGA-LFVA-RNRFAVLDKSNEQVVIKNLKNKVT------------KKLL-LPESTDDIFYAGTGN---LLL 467 (1202)
T ss_pred chhhhcCCCCce-EEEE-ecceEEEEecCcceEEecccchhh------------hccc-CcccccceeeccCcc---EEE
Confidence 000 00011222 2322 223222222244555555554432 1111 123556666665544 777
Q ss_pred EcCceEEEEeCCC
Q 004581 637 YSARAMCVIDFGR 649 (744)
Q Consensus 637 ~~~~~~~~~~~~~ 649 (744)
.+...+..+|+.+
T Consensus 468 ~~~~~v~lfdvQq 480 (1202)
T KOG0292|consen 468 RSPDSVTLFDVQQ 480 (1202)
T ss_pred EcCCeEEEEEeec
Confidence 8888888888755
No 40
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.6e-32 Score=257.64 Aligned_cols=456 Identities=15% Similarity=0.199 Sum_probs=321.2
Q ss_pred eEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccc
Q 004581 16 SVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVV 95 (744)
Q Consensus 16 ~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (744)
.|++||..+..-++.+......|.|++||+...-
T Consensus 135 hvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G---------------------------------------------- 168 (626)
T KOG2106|consen 135 HVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGG---------------------------------------------- 168 (626)
T ss_pred eeeecccccceeeeeeccccccceeeeecccCCC----------------------------------------------
Confidence 6999999998889988888899999999986621
Q ss_pred cCCeEEEE--ecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCC
Q 004581 96 EDRRVALA--CDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLG 173 (744)
Q Consensus 96 ~~~~la~~--~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~ 173 (744)
.+|+.- +.+..+.+||.+.+..+ .....-...|....|+|.+..|+..+..|.+..|+.+.+....+...-
T Consensus 169 --~~l~~vD~s~~h~lSVWdWqk~~~~---~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~f-- 241 (626)
T KOG2106|consen 169 --SLLCAVDDSNPHMLSVWDWQKKAKL---GPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIF-- 241 (626)
T ss_pred --ceEEEecCCCccccchhhchhhhcc---CcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeecc--
Confidence 233333 45667899999865555 445556678999999998877766666789999999988776654321
Q ss_pred CCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccC
Q 004581 174 GLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE 253 (744)
Q Consensus 174 ~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~ 253 (744)
.......|.|++|.++|.+++|+++|.|.||+..+.+..+....|.+.|.+++...+|. |++|+.|..|..||-.-.
T Consensus 242 --ek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~ 318 (626)
T KOG2106|consen 242 --EKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYR 318 (626)
T ss_pred --ccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEecccccc
Confidence 11344889999999999999999999999999988877777779999999999999996 566999999999993322
Q ss_pred cCCCCC------CC---------CcccccceEEEEe--------eeeeccCcceeeeeeccCCCCCCCCcccccccCCCC
Q 004581 254 SIGPND------GL---------SSSEVIKKWIYVG--------SVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGRE 310 (744)
Q Consensus 254 ~~~~~~------~~---------~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~ 310 (744)
.....+ .+ ...+......... ...+|......++.
T Consensus 319 k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~---------------------- 376 (626)
T KOG2106|consen 319 KLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLAT---------------------- 376 (626)
T ss_pred ccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEc----------------------
Confidence 211000 00 0000111111111 11233333333333
Q ss_pred CCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEee
Q 004581 311 KPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVR 390 (744)
Q Consensus 311 ~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~ 390 (744)
++..+.+++++.|+.+++|+-. +.... ......+.++.|.|.| .++.+...-+.+-++
T Consensus 377 -----------hps~~q~~T~gqdk~v~lW~~~--k~~wt--------~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d 434 (626)
T KOG2106|consen 377 -----------HPSKNQLLTCGQDKHVRLWNDH--KLEWT--------KIIEDPAECADFHPSG-VVAVGTATGRWFVLD 434 (626)
T ss_pred -----------CCChhheeeccCcceEEEccCC--ceeEE--------EEecCceeEeeccCcc-eEEEeeccceEEEEe
Confidence 5566799999999999999922 11111 1122567789999999 777665544444444
Q ss_pred ccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCCCCceEEeeeccCCccccc
Q 004581 391 LENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQF 469 (744)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (744)
..+ +.+.++... ..++.+++++|+|.+||++ .|+.|++|.+.. .+.+.-.. ....+ .+
T Consensus 435 ~e~--------------~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~--~g~~y~r~--~k~~g--s~ 493 (626)
T KOG2106|consen 435 TET--------------QDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA--NGRKYSRV--GKCSG--SP 493 (626)
T ss_pred ccc--------------ceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECC--CCcEEEEe--eeecC--ce
Confidence 333 135555555 7899999999999999995 899999999986 23332111 22333 69
Q ss_pred ccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCccc-------ccccCCCCCCceEEEEECCCCCEEEEEeCCC
Q 004581 470 AHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREE-------HDREIQPSEPPITKMFTSSDGQWLAAVNCFG 542 (744)
Q Consensus 470 v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~i~~l~~spdg~~las~~~dg 542 (744)
++.+.||+|+++|.+.+-|-.|..|....-+.+...+..... .+.-...+...|..++-|.+.+++|+|+..|
T Consensus 494 ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g 573 (626)
T KOG2106|consen 494 ITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFG 573 (626)
T ss_pred eEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCc
Confidence 999999999999999999999999954322222211110000 0001134677788888999999999999999
Q ss_pred cEEEEECCCcceE--EEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEc
Q 004581 543 DVYIFNLEIQRQH--WFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDV 593 (744)
Q Consensus 543 ~i~iwd~~~~~~~--~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~ 593 (744)
+|++|...-.+.. ......|++.|++++|.- +...|++.+.|.+|..|++
T Consensus 574 ~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~-~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 574 KVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLC-KDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred eEEEEccccCCCcccceeeccccceeEEEEEee-CCceEEecCCCceEEEEEe
Confidence 9999987643332 222345778999999999 7788888889999999986
No 41
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-34 Score=260.11 Aligned_cols=278 Identities=18% Similarity=0.279 Sum_probs=244.1
Q ss_pred CCCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCC
Q 004581 3 LPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEN 82 (744)
Q Consensus 3 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (744)
|-+.++++|+.|++|.|||+.+|+++.++.||-..|..+++|+-.
T Consensus 161 P~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rH----------------------------------- 205 (460)
T KOG0285|consen 161 PGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRH----------------------------------- 205 (460)
T ss_pred CCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccC-----------------------------------
Confidence 456789999999999999999999999999999999999999988
Q ss_pred CCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 004581 83 DSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG 162 (744)
Q Consensus 83 ~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~ 162 (744)
.+|+++++|+.|+-||++.++.+ +.+.||-..|.|++.+|.-+.|+||+.|.++||||+++.
T Consensus 206 ---------------pYlFs~gedk~VKCwDLe~nkvI---R~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr 267 (460)
T KOG0285|consen 206 ---------------PYLFSAGEDKQVKCWDLEYNKVI---RHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR 267 (460)
T ss_pred ---------------ceEEEecCCCeeEEEechhhhhH---HHhccccceeEEEeccccceeEEecCCcceEEEeeeccc
Confidence 69999999999999999977766 889999999999999999999999999999999999999
Q ss_pred ceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecC
Q 004581 163 YEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS 241 (744)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~ 241 (744)
..+..+. +|...|..+.+.|-. ++++|+.|++|++||+..|+...++..|...|.+++.+|....+++++.
T Consensus 268 ~~V~~l~--------GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~ 339 (460)
T KOG0285|consen 268 ASVHVLS--------GHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP 339 (460)
T ss_pred ceEEEec--------CCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC
Confidence 9999998 899999999999866 9999999999999999999999999999999999999999999999988
Q ss_pred CCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccc
Q 004581 242 DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWA 321 (744)
Q Consensus 242 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 321 (744)
|. |+.|++..+.+ +..+.+|..-|.+++.. .|+
T Consensus 340 dn-ik~w~~p~g~f-----------------~~nlsgh~~iintl~~n---------sD~-------------------- 372 (460)
T KOG0285|consen 340 DN-IKQWKLPEGEF-----------------LQNLSGHNAIINTLSVN---------SDG-------------------- 372 (460)
T ss_pred cc-ceeccCCccch-----------------hhccccccceeeeeeec---------cCc--------------------
Confidence 75 99999998874 66789999999999986 444
Q ss_pred cCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCC
Q 004581 322 HLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSS 401 (744)
Q Consensus 322 ~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~ 401 (744)
++++|+..|.+.+||.++...++.......|. +
T Consensus 373 -----v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpG------------------------S------------------ 405 (460)
T KOG0285|consen 373 -----VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPG------------------------S------------------ 405 (460)
T ss_pred -----eEEEcCCceEEEEEecCcCcccccccccccCC------------------------c------------------
Confidence 89999999999999998866554332111110 0
Q ss_pred CCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeec
Q 004581 402 GGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKK 448 (744)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~ 448 (744)
......|.+.+|...|..|+++ .|.+|++|.-..
T Consensus 406 -------------l~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 406 -------------LESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred -------------cccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 1123668889999999888875 888999997654
No 42
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5.6e-34 Score=256.98 Aligned_cols=316 Identities=13% Similarity=0.161 Sum_probs=258.9
Q ss_pred CCCCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCC
Q 004581 2 GLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESE 81 (744)
Q Consensus 2 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (744)
+|...++++||.|..-.+|++.+|.....+.+|...|.|+.||.||
T Consensus 73 ~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdg---------------------------------- 118 (399)
T KOG0296|consen 73 HPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDG---------------------------------- 118 (399)
T ss_pred CCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCc----------------------------------
Confidence 4656778999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 004581 82 NDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL 161 (744)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~ 161 (744)
.+||+|.-+|.|+||+..++... ..+...-+.|.=+.|+|-+..|+.|+.||.+.+|.+.+
T Consensus 119 ----------------tlLATGdmsG~v~v~~~stg~~~---~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~ 179 (399)
T KOG0296|consen 119 ----------------TLLATGDMSGKVLVFKVSTGGEQ---WKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPS 179 (399)
T ss_pred ----------------eEEEecCCCccEEEEEcccCceE---EEeecccCceEEEEecccccEEEeecCCCcEEEEECCC
Confidence 69999999999999999977765 45555566788899999999999999999999999998
Q ss_pred CceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeec-cccceeEEEEcCCCCEEEee
Q 004581 162 GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSF-HKGDVNALAAAPSHNRVFST 239 (744)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~~~ 239 (744)
+...+.+. +|..++++=.|.|+| +++++..||+|++||..+++++..+.. ......++.++..+..++.|
T Consensus 180 ~~~~kv~~--------Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g 251 (399)
T KOG0296|consen 180 QALCKVMS--------GHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKG 251 (399)
T ss_pred cceeeEec--------CCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEec
Confidence 87777777 799999999999999 999999999999999999999988863 34567899999999999999
Q ss_pred cCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeee--------eccCcceeeeeeccCCCCCCCCcccccccCCCCC
Q 004581 240 GSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVR--------AHTHDVRALTVAVPISREDPLPEDKVKRSRGREK 311 (744)
Q Consensus 240 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (744)
..++.+++-+..+++. +.... .+.+.+.++.+. |-
T Consensus 252 ~~e~~~~~~~~~sgKV-----------------v~~~n~~~~~l~~~~e~~~esve~~---------~~----------- 294 (399)
T KOG0296|consen 252 NSEGVACGVNNGSGKV-----------------VNCNNGTVPELKPSQEELDESVESI---------PS----------- 294 (399)
T ss_pred cCCccEEEEccccceE-----------------EEecCCCCccccccchhhhhhhhhc---------cc-----------
Confidence 9999999888777652 11111 233333333332 00
Q ss_pred CccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeec
Q 004581 312 PIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRL 391 (744)
Q Consensus 312 ~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~ 391 (744)
...-++.++|+.||+|.+||+...+
T Consensus 295 ----------ss~lpL~A~G~vdG~i~iyD~a~~~--------------------------------------------- 319 (399)
T KOG0296|consen 295 ----------SSKLPLAACGSVDGTIAIYDLAAST--------------------------------------------- 319 (399)
T ss_pred ----------ccccchhhcccccceEEEEecccch---------------------------------------------
Confidence 0112256666666666666664311
Q ss_pred cCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCccccccc
Q 004581 392 ENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAH 471 (744)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 471 (744)
. +....|..+|.
T Consensus 320 -------------------------------------------------------------~-------R~~c~he~~V~ 331 (399)
T KOG0296|consen 320 -------------------------------------------------------------L-------RHICEHEDGVT 331 (399)
T ss_pred -------------------------------------------------------------h-------heeccCCCceE
Confidence 0 11223344688
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC
Q 004581 472 SMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE 550 (744)
Q Consensus 472 ~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~ 550 (744)
.+.|-+ ..+|++++.+|.|+.||..+|+++.++.+ |...|.+++++|+++++++++.|++.+||+..
T Consensus 332 ~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G-----------H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 332 KLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTG-----------HQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEcC-cchheeeccCceEEeeeccccceEEEEec-----------CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 888987 78999999999999999999999999999 99999999999999999999999999999864
No 43
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.3e-35 Score=261.48 Aligned_cols=292 Identities=17% Similarity=0.236 Sum_probs=252.4
Q ss_pred eEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcC
Q 004581 121 IYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS 199 (744)
Q Consensus 121 ~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~ 199 (744)
...+.+.+|.+.|.|+++.|..++++||+.|++|+|||+.+|+...++. +|...|..+++++-. ++++++.
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltlt--------Ghi~~vr~vavS~rHpYlFs~ge 213 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLT--------GHIETVRGVAVSKRHPYLFSAGE 213 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeec--------chhheeeeeeecccCceEEEecC
Confidence 3447889999999999999999999999999999999999999999998 799999999999988 9999999
Q ss_pred CCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeec
Q 004581 200 TGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAH 279 (744)
Q Consensus 200 dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 279 (744)
|+.|+.||++..+.++.+.+|-..|.|++..|.-..|++|+.|.++++||+++.. .+..+.+|
T Consensus 214 dk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-----------------~V~~l~GH 276 (460)
T KOG0285|consen 214 DKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-----------------SVHVLSGH 276 (460)
T ss_pred CCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-----------------eEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999977 37889999
Q ss_pred cCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCC
Q 004581 280 THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQR 359 (744)
Q Consensus 280 ~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~ 359 (744)
..+|.++.+. |. .+.+++|+.|++|++||+...+.
T Consensus 277 ~~~V~~V~~~---------~~------------------------dpqvit~S~D~tvrlWDl~agkt------------ 311 (460)
T KOG0285|consen 277 TNPVASVMCQ---------PT------------------------DPQVITGSHDSTVRLWDLRAGKT------------ 311 (460)
T ss_pred CCcceeEEee---------cC------------------------CCceEEecCCceEEEeeeccCce------------
Confidence 9999999885 22 23799999999999999874220
Q ss_pred CccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCC
Q 004581 360 VPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHV 439 (744)
Q Consensus 360 ~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~ 439 (744)
+
T Consensus 312 -------------------------------------------------------------------------~------ 312 (460)
T KOG0285|consen 312 -------------------------------------------------------------------------M------ 312 (460)
T ss_pred -------------------------------------------------------------------------e------
Confidence 0
Q ss_pred ceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCC
Q 004581 440 KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPS 519 (744)
Q Consensus 440 ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 519 (744)
..+..|...+.+++.+|....+|+++.|. |+-|++..|..+..+.+ |
T Consensus 313 ---------------------~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsg-----------h 359 (460)
T KOG0285|consen 313 ---------------------ITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSG-----------H 359 (460)
T ss_pred ---------------------EeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcccc-----------c
Confidence 11122333678888899999999998875 99999999999999888 8
Q ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEe---cC----CCCceeEEeecCCCCCeEEEEecCCeEEEEE
Q 004581 520 EPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFIS---RL----EGASVTAAGFPPQNNNVLIITTSSNQVYVFD 592 (744)
Q Consensus 520 ~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~---~~----~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd 592 (744)
...|++++...|| ++++|+.+|.+..||.+++-...... .. ....|.+.+|.. .+..|+++..|.+|++|.
T Consensus 360 ~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDk-tg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 360 NAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDK-TGSRLITGEADKTIKMYK 437 (460)
T ss_pred cceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecc-cCceEEeccCCcceEEEe
Confidence 9999999998887 78889999999999999886543331 11 125789999999 999999999999999997
Q ss_pred cCCC
Q 004581 593 VEAK 596 (744)
Q Consensus 593 ~~~~ 596 (744)
-+..
T Consensus 438 eDe~ 441 (460)
T KOG0285|consen 438 EDEH 441 (460)
T ss_pred cccc
Confidence 5533
No 44
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-33 Score=267.89 Aligned_cols=448 Identities=17% Similarity=0.167 Sum_probs=332.4
Q ss_pred eEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCC
Q 004581 28 KIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDG 107 (744)
Q Consensus 28 ~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg 107 (744)
.+.+..+...|.|+.|+|.. ..+.++-..|
T Consensus 6 krk~~~rSdRVKsVd~HPte--------------------------------------------------Pw~la~LynG 35 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTE--------------------------------------------------PWILAALYNG 35 (794)
T ss_pred hhHhhccCCceeeeecCCCC--------------------------------------------------ceEEEeeecC
Confidence 44566789999999999998 6888888999
Q ss_pred eEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEE
Q 004581 108 CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLL 187 (744)
Q Consensus 108 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 187 (744)
.|.|||.++...+ +.+.-..-+|.+..|-+-.+++++|+.|..||||+..+++.+..+. .|...|.+++
T Consensus 36 ~V~IWnyetqtmV---ksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~Fe--------AH~DyIR~ia 104 (794)
T KOG0276|consen 36 DVQIWNYETQTMV---KSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFE--------AHSDYIRSIA 104 (794)
T ss_pred eeEEEecccceee---eeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEee--------ccccceeeee
Confidence 9999999866555 7777778899999999999999999999999999999999999999 7999999999
Q ss_pred EecCC-eEEEEcCCCCEEEEeCCC-cceEEEeeccccceeEEEEcC-CCCEEEeecCCCeEEEEEcccCcCCCCCCCCcc
Q 004581 188 SLRCG-TLVSADSTGSVQFWDSRH-GTLLQAHSFHKGDVNALAAAP-SHNRVFSTGSDGQVILYKASCESIGPNDGLSSS 264 (744)
Q Consensus 188 ~~~~~-~l~s~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 264 (744)
.+|.. ++++++.|-+|++||.+. ..+.+++.+|..-|.+++|+| |.+.+++++.|++|++|.+....
T Consensus 105 vHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~---------- 174 (794)
T KOG0276|consen 105 VHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH---------- 174 (794)
T ss_pred ecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC----------
Confidence 99999 999999999999999986 467899999999999999999 56899999999999999998876
Q ss_pred cccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCc
Q 004581 265 EVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 344 (744)
Q Consensus 265 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~ 344 (744)
+..++.+|...|.++.+- +. ++.++|++|+.|..+++||..+
T Consensus 175 -------~nfTl~gHekGVN~Vdyy---------~~----------------------gdkpylIsgaDD~tiKvWDyQt 216 (794)
T KOG0276|consen 175 -------PNFTLEGHEKGVNCVDYY---------TG----------------------GDKPYLISGADDLTIKVWDYQT 216 (794)
T ss_pred -------CceeeeccccCcceEEec---------cC----------------------CCcceEEecCCCceEEEeecch
Confidence 367889999999999995 22 2346999999999999999987
Q ss_pred cCCCCCcccCCCCCCCccccccceeecCCeEEEEEeC--CeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeE
Q 004581 345 FTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS--CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKII 422 (744)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 422 (744)
..-. .....|.+.|..+.|.|.-.++++++ ++++||.-.+-..+ ..+. -+-.++.
T Consensus 217 k~CV-------~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE---------------~tLn-~gleRvW 273 (794)
T KOG0276|consen 217 KSCV-------QTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLE---------------KTLN-YGLERVW 273 (794)
T ss_pred HHHH-------HHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehh---------------hhhh-cCCceEE
Confidence 5433 23345668899999999999999875 59999986654321 1111 2236677
Q ss_pred EEEEcCCCCEEEEEcCCceEEEEeecCC-------CCCceEEeeec--------------------------cCCccccc
Q 004581 423 CSTISNSGMLFAYSDHVKPSLFELKKGK-------VGQGEWIINKR--------------------------QLPRKLQF 469 (744)
Q Consensus 423 ~~~~s~~g~~la~~~~~~v~l~~~~~~~-------~~~~~~~~~~~--------------------------~~~~~~~~ 469 (744)
|++-.+.+..+++|.|....+..+...+ .+..+|..... ++....-.
T Consensus 274 ~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiy 353 (794)
T KOG0276|consen 274 CIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIY 353 (794)
T ss_pred EEeecCCCCeEEEeccCCcEEEEccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccc
Confidence 7777777777777755555544443211 12233432210 00000002
Q ss_pred ccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEEC
Q 004581 470 AHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL 549 (744)
Q Consensus 470 v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~ 549 (744)
...++-||+|+++++++ ||.-.||-.-..+- + +.+.-....|++|.+..|+-..++.|.++
T Consensus 354 Pq~L~hsPNGrfV~Vcg-dGEyiIyTala~Rn----K------------~fG~~~eFvw~~dsne~avRes~~~vki~-- 414 (794)
T KOG0276|consen 354 PQTLAHSPNGRFVVVCG-DGEYIIYTALALRN----K------------AFGSGLEFVWAADSNEFAVRESNGNVKIF-- 414 (794)
T ss_pred hHHhccCCCCcEEEEec-CccEEEEEeeehhh----c------------ccccceeEEEcCCCCeEEEEecCCceEEE--
Confidence 34566789999888776 77777776321111 1 35566788999998889998889999999
Q ss_pred CCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCCC
Q 004581 550 EIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSP 629 (744)
Q Consensus 550 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg 629 (744)
++.+....+... .+ +..+. .|.+|.+. .++.+.+||.+++++. ++ -.-...++.|+.+|
T Consensus 415 knfke~ksi~~~---~~-~e~i~--gg~Llg~~-ss~~~~fydW~~~~lV-----------rr---I~v~~k~v~w~d~g 473 (794)
T KOG0276|consen 415 KNFKEHKSIRPD---MS-AEGIF--GGPLLGVR-SSDFLCFYDWESGELV-----------RR---IEVTSKHVYWSDNG 473 (794)
T ss_pred ecceeccccccc---cc-eeeec--CCceEEEE-eCCeEEEEEcccceEE-----------EE---EeeccceeEEecCC
Confidence 566555444321 11 22232 35555554 4667999999999762 22 23456678998874
Q ss_pred CCcEEEEEcCceEEEEeCCC
Q 004581 630 SSSSVIIYSARAMCVIDFGR 649 (744)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~ 649 (744)
..+.+.+...++.+.+++
T Consensus 474 --~lVai~~d~Sfyil~~n~ 491 (794)
T KOG0276|consen 474 --ELVAIAGDDSFYILKFNA 491 (794)
T ss_pred --CEEEEEecCceeEEEecH
Confidence 566667777777666644
No 45
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8.6e-36 Score=272.29 Aligned_cols=284 Identities=15% Similarity=0.227 Sum_probs=242.9
Q ss_pred CccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEE
Q 004581 128 RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFW 206 (744)
Q Consensus 128 ~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vw 206 (744)
.-+..|..+.|.|+|+.|++|+..|.+.+|+..+-..... ...|+..|.++.|++++ .+++|+.+|.|++|
T Consensus 94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEti--------lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyW 165 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETI--------LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYW 165 (464)
T ss_pred ccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHH--------hhhhcccceeEEEccCCCEEEEcCCCceEEec
Confidence 3456899999999999999999999999999632111111 12699999999999999 89999999999999
Q ss_pred eCCCcceEEEeeccc-cceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCccee
Q 004581 207 DSRHGTLLQAHSFHK-GDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRA 285 (744)
Q Consensus 207 d~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 285 (744)
+.. ...++.+.+|. ..|.+++|+|+...+++++.||+|+|||...... ...+++|.-+|++
T Consensus 166 qpn-mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke-----------------e~vL~GHgwdVks 227 (464)
T KOG0284|consen 166 QPN-MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE-----------------ERVLRGHGWDVKS 227 (464)
T ss_pred ccc-hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch-----------------hheeccCCCCcce
Confidence 987 44455566555 8999999999999999999999999999987653 4567999999999
Q ss_pred eeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccc
Q 004581 286 LTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLV 365 (744)
Q Consensus 286 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v 365 (744)
+.|. |...+++++|.|..|++||.++..
T Consensus 228 vdWH---------------------------------P~kgLiasgskDnlVKlWDprSg~------------------- 255 (464)
T KOG0284|consen 228 VDWH---------------------------------PTKGLIASGSKDNLVKLWDPRSGS------------------- 255 (464)
T ss_pred eccC---------------------------------CccceeEEccCCceeEeecCCCcc-------------------
Confidence 9995 334499999999999999987522
Q ss_pred cceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEE
Q 004581 366 HNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFE 445 (744)
Q Consensus 366 ~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~ 445 (744)
T Consensus 256 -------------------------------------------------------------------------------- 255 (464)
T KOG0284|consen 256 -------------------------------------------------------------------------------- 255 (464)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEE
Q 004581 446 LKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITK 525 (744)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 525 (744)
++ ..+..|...|..+.|+|++++|++++.|..+++||+.+.+.+.++.+ |...|++
T Consensus 256 --------cl-----~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~-----------Hkkdv~~ 311 (464)
T KOG0284|consen 256 --------CL-----ATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRG-----------HKKDVTS 311 (464)
T ss_pred --------hh-----hhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhc-----------chhhhee
Confidence 11 23445556888999999999999999999999999998889999998 9999999
Q ss_pred EEECC-CCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcC
Q 004581 526 MFTSS-DGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVE 594 (744)
Q Consensus 526 l~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~ 594 (744)
+.|+| ...+|.+|+.||.|..|.+...+++..++..|...|++|+|+| -|.+|++|+.|.++++|.-.
T Consensus 312 ~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hP-lGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 312 LTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHP-LGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccc-cceeEeecCCCcceeeeccC
Confidence 99999 4568889999999999999988888888888999999999999 99999999999999999744
No 46
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.1e-34 Score=288.29 Aligned_cols=306 Identities=19% Similarity=0.235 Sum_probs=246.5
Q ss_pred cCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCC
Q 004581 130 SGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSR 209 (744)
Q Consensus 130 ~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~ 209 (744)
...++|..|++|+.+||.|..|..|++|.+... .+..++ +...+. .+=+.+.|-.+.+-|-.
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk---------~~~~l~--------~~d~~sad~~~~~~D~~ 439 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLK---------DASDLS--------NIDTESADVDVDMLDDD 439 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchh-hhcccc---------chhhhc--------cccccccchhhhhcccc
Confidence 456899999999999999999999999998643 333333 111110 12233444457778888
Q ss_pred CcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeee
Q 004581 210 HGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA 289 (744)
Q Consensus 210 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 289 (744)
++....++.+|.++|....|+|+.++|++++.|+++++|.+.+.. ++....+|..+|..+.|+
T Consensus 440 ~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s-----------------~~V~y~GH~~PVwdV~F~ 502 (707)
T KOG0263|consen 440 SSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS-----------------CLVIYKGHLAPVWDVQFA 502 (707)
T ss_pred CCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccce-----------------eEEEecCCCcceeeEEec
Confidence 777888899999999999999999999999999999999998844 577788999999999997
Q ss_pred ccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCcccccccee
Q 004581 290 VPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTI 369 (744)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 369 (744)
|-|- +++|++.|++-++|......
T Consensus 503 ---------P~Gy------------------------YFatas~D~tArLWs~d~~~----------------------- 526 (707)
T KOG0263|consen 503 ---------PRGY------------------------YFATASHDQTARLWSTDHNK----------------------- 526 (707)
T ss_pred ---------CCce------------------------EEEecCCCceeeeeecccCC-----------------------
Confidence 5454 89999999999888765311
Q ss_pred ecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecC
Q 004581 370 FSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKG 449 (744)
Q Consensus 370 ~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~ 449 (744)
T Consensus 527 -------------------------------------------------------------------------------- 526 (707)
T KOG0263|consen 527 -------------------------------------------------------------------------------- 526 (707)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEEC
Q 004581 450 KVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTS 529 (744)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 529 (744)
.. ..+.+|...+.|+.|+|++.|+++|+.|.+|++||+.+|..++.|.+ |.++|++++||
T Consensus 527 --Pl-------RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G-----------H~~~V~al~~S 586 (707)
T KOG0263|consen 527 --PL-------RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG-----------HKGPVTALAFS 586 (707)
T ss_pred --ch-------hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC-----------CCCceEEEEEc
Confidence 00 33456777899999999999999999999999999999999999999 99999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccc----ccccc-
Q 004581 530 SDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLG----EWSMQ- 604 (744)
Q Consensus 530 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~----~ws~~- 604 (744)
|+|++||+|+.||.|.+||+.+++.+..+.+ |.+.|.+|.|+. ||..||+++.|++|++||+..-... .-+..
T Consensus 587 p~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~-Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~ 664 (707)
T KOG0263|consen 587 PCGRYLASGDEDGLIKIWDLANGSLVKQLKG-HTGTIYSLSFSR-DGNVLASGGADNSVRLWDLTKVIELLNLGHISTSN 664 (707)
T ss_pred CCCceEeecccCCcEEEEEcCCCcchhhhhc-ccCceeEEEEec-CCCEEEecCCCCeEEEEEchhhccccccccccccc
Confidence 9999999999999999999999999888876 588999999999 9999999999999999998743221 00000
Q ss_pred --------ccCCcccccccCCCceEEEEeCCC
Q 004581 605 --------HTFVLPRRYQEFPGEVIGLSFSPS 628 (744)
Q Consensus 605 --------~~~~~~~~~~~~~~~v~~i~fspd 628 (744)
....+...+.....+|.+|.|...
T Consensus 665 ~~~~~~~~~~~~llgs~~tK~tpv~~l~Ftrr 696 (707)
T KOG0263|consen 665 SAITQENNASSLLLGSFYTKNTPVVGLHFTRR 696 (707)
T ss_pred ccccccCCCCcceeeeeeecCceEEEEEEecc
Confidence 011244556556678888888764
No 47
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.6e-31 Score=260.53 Aligned_cols=490 Identities=16% Similarity=0.171 Sum_probs=349.1
Q ss_pred CCeeEEecCCCeEEEEEccCCc-eeEEeeccC-cceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCC
Q 004581 5 GGRLFSSSIDGSVSEWDLYDLK-QKIVLQSID-FSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEN 82 (744)
Q Consensus 5 ~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~h~-~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (744)
...||.+=.||.|.+||+...= +...+.++. ..|.+++|++.+
T Consensus 37 S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~----------------------------------- 81 (691)
T KOG2048|consen 37 SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG----------------------------------- 81 (691)
T ss_pred CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-----------------------------------
Confidence 4568999999999999998743 444566654 789999999776
Q ss_pred CCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 004581 83 DSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG 162 (744)
Q Consensus 83 ~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~ 162 (744)
+|.+.+-+|.|.-||+.+.+.. ..+..-.+.|.+++.+|.++.++.||.||.+...+...+
T Consensus 82 ----------------RLFS~g~sg~i~EwDl~~lk~~---~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~ 142 (691)
T KOG2048|consen 82 ----------------RLFSSGLSGSITEWDLHTLKQK---YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPD 142 (691)
T ss_pred ----------------eEEeecCCceEEEEecccCcee---EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCc
Confidence 8999999999999999987776 777788899999999999999999999998888888877
Q ss_pred ceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeec--------cccceeEEEEcCCC
Q 004581 163 YEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSF--------HKGDVNALAAAPSH 233 (744)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~--------h~~~v~~l~~~~~~ 233 (744)
...+..... ...+.|.++.|.|++ .++.|+.||.|++||..++..+..... ...-|+++.|..++
T Consensus 143 ~I~~~r~l~------rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~ 216 (691)
T KOG2048|consen 143 KITYKRSLM------RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS 216 (691)
T ss_pred eEEEEeecc------cccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC
Confidence 776655432 467999999999999 699999999999999999887762221 23357888888666
Q ss_pred CEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCc
Q 004581 234 NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPI 313 (744)
Q Consensus 234 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (744)
.|++|..-|+|.+||...+.+ +.....|..+|.+++.+ +
T Consensus 217 -tI~sgDS~G~V~FWd~~~gTL-----------------iqS~~~h~adVl~Lav~---------~-------------- 255 (691)
T KOG2048|consen 217 -TIASGDSAGTVTFWDSIFGTL-----------------IQSHSCHDADVLALAVA---------D-------------- 255 (691)
T ss_pred -cEEEecCCceEEEEcccCcch-----------------hhhhhhhhcceeEEEEc---------C--------------
Confidence 699999999999999988774 67788999999999985 3
Q ss_pred cccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccC
Q 004581 314 DFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLEN 393 (744)
Q Consensus 314 ~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~ 393 (744)
+.+.++++|.|+.|..|...+..... ....+...|...+++++..++ .+.++.....+.-.....
T Consensus 256 ----------~~d~vfsaGvd~~ii~~~~~~~~~~w---v~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 256 ----------NEDRVFSAGVDPKIIQYSLTTNKSEW---VINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred ----------CCCeEEEccCCCceEEEEecCCccce---eeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 33499999999999988887654421 112344455677788888777 555554444443332222
Q ss_pred CcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCC-----CCCceEEeeeccCCcccc
Q 004581 394 NVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGK-----VGQGEWIINKRQLPRKLQ 468 (744)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~-----~~~~~~~~~~~~~~~~~~ 468 (744)
... ..........+ .. -+...|..+++..=....+.+|.+...- +...+..+. .....
T Consensus 321 ~~~----------~~h~~~~~~p~-~~--~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~----~k~~~ 383 (691)
T KOG2048|consen 321 FKN----------MDHRQKNLFPA-SD--RVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLF----TKEKE 383 (691)
T ss_pred cCc----------hhhhccccccc-cc--eeecCccceEEEEeccccccceeccCcccccccChhhheeee----cCCcc
Confidence 110 00000000000 11 1223344444444566677777775420 011111111 11223
Q ss_pred cccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEe-CCCcEEEE
Q 004581 469 FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN-CFGDVYIF 547 (744)
Q Consensus 469 ~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~-~dg~i~iw 547 (744)
.+.+.+.||||++++.+.-. .++||.++....+..... ...+...-..+.+.|+-|++.++.++ ....+.++
T Consensus 384 nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v------~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~ 456 (691)
T KOG2048|consen 384 NISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVINV------DDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEF 456 (691)
T ss_pred ceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEEEe------ccchhhhccceeeEEEecCceEEEEecccceeEEE
Confidence 68899999999999988754 488888864222221111 00111345678899999999888887 67788899
Q ss_pred ECCCcceEEEE---ecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCcccccc-cCCCceEEE
Q 004581 548 NLEIQRQHWFI---SRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQ-EFPGEVIGL 623 (744)
Q Consensus 548 d~~~~~~~~~~---~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~-~~~~~v~~i 623 (744)
+++++...... +......|..|..+| +|++||+++.+|.|.+|++++++... +. ..+..++..
T Consensus 457 el~~ps~kel~~~~~~~~~~~I~~l~~Ss-dG~yiaa~~t~g~I~v~nl~~~~~~~------------l~~rln~~vTa~ 523 (691)
T KOG2048|consen 457 ELETPSFKELKSIQSQAKCPSISRLVVSS-DGNYIAAISTRGQIFVYNLETLESHL------------LKVRLNIDVTAA 523 (691)
T ss_pred EecCcchhhhhccccccCCCcceeEEEcC-CCCEEEEEeccceEEEEEcccceeec------------chhccCcceeee
Confidence 88876543222 222236899999999 99999999999999999999998633 22 234789999
Q ss_pred EeCCCCCCcEEEEEcCceEEEEeC
Q 004581 624 SFSPSPSSSSVIIYSARAMCVIDF 647 (744)
Q Consensus 624 ~fspdg~~~~~~~~~~~~~~~~~~ 647 (744)
+|+|.-.+..++.++++.++-+|+
T Consensus 524 ~~~~~~~~~lvvats~nQv~efdi 547 (691)
T KOG2048|consen 524 AFSPFVRNRLVVATSNNQVFEFDI 547 (691)
T ss_pred eccccccCcEEEEecCCeEEEEec
Confidence 999875677778888899999997
No 48
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.9e-34 Score=286.62 Aligned_cols=281 Identities=15% Similarity=0.129 Sum_probs=237.6
Q ss_pred eeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecC
Q 004581 27 QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDD 106 (744)
Q Consensus 27 ~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d 106 (744)
+.+++..-...+.|..|++|+ ..||.|..|
T Consensus 370 c~YT~~nt~~~v~ca~fSdds--------------------------------------------------smlA~Gf~d 399 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDS--------------------------------------------------SMLACGFVD 399 (707)
T ss_pred EEEEEEEcCCcceeEeecCCc--------------------------------------------------chhhccccc
Confidence 445555556789999999999 589999999
Q ss_pred CeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEE
Q 004581 107 GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSL 186 (744)
Q Consensus 107 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 186 (744)
..|++|.+. ...+ +.+++.. . ...+=+.+.|-.+.+-|-.++....++. +|.++|+..
T Consensus 400 S~i~~~Sl~-p~kl---~~lk~~~-~---------l~~~d~~sad~~~~~~D~~~~~~~~~L~--------GH~GPVyg~ 457 (707)
T KOG0263|consen 400 SSVRVWSLT-PKKL---KKLKDAS-D---------LSNIDTESADVDVDMLDDDSSGTSRTLY--------GHSGPVYGC 457 (707)
T ss_pred cEEEEEecc-hhhh---ccccchh-h---------hccccccccchhhhhccccCCceeEEee--------cCCCceeee
Confidence 999999997 3344 3443221 1 1223345556567788877777777777 899999999
Q ss_pred EEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCccc
Q 004581 187 LSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSE 265 (744)
Q Consensus 187 ~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 265 (744)
.|+|+. +|+++++|+++|+|.+.+..++-.+++|..+|..+.|+|.|-++++++.|++-++|......
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~----------- 526 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK----------- 526 (707)
T ss_pred eecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC-----------
Confidence 999999 89999999999999999999999999999999999999999999999999999999988865
Q ss_pred ccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCcc
Q 004581 266 VIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEF 345 (744)
Q Consensus 266 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~ 345 (744)
+.+.+.+|-.+|.|+.|. |+..++++||.|.++++||..+.
T Consensus 527 ------PlRifaghlsDV~cv~FH---------------------------------PNs~Y~aTGSsD~tVRlWDv~~G 567 (707)
T KOG0263|consen 527 ------PLRIFAGHLSDVDCVSFH---------------------------------PNSNYVATGSSDRTVRLWDVSTG 567 (707)
T ss_pred ------chhhhcccccccceEEEC---------------------------------CcccccccCCCCceEEEEEcCCC
Confidence 377889999999999994 45559999999999999998652
Q ss_pred CCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEE
Q 004581 346 TKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICST 425 (744)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 425 (744)
.
T Consensus 568 ~------------------------------------------------------------------------------- 568 (707)
T KOG0263|consen 568 N------------------------------------------------------------------------------- 568 (707)
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred EcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeee
Q 004581 426 ISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTF 505 (744)
Q Consensus 426 ~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~ 505 (744)
.||+ +.+|..+|.+++|||+|++|++|+.||.|.+||+.+++++.++
T Consensus 569 --------------~VRi-------------------F~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l 615 (707)
T KOG0263|consen 569 --------------SVRI-------------------FTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL 615 (707)
T ss_pred --------------EEEE-------------------ecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh
Confidence 0111 2356668999999999999999999999999999999999999
Q ss_pred ccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCc
Q 004581 506 TPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ 552 (744)
Q Consensus 506 ~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~ 552 (744)
.+ |.+.|.++.||.||..||+++.|..|++||+...
T Consensus 616 ~~-----------Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 616 KG-----------HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred hc-----------ccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99 9999999999999999999999999999999643
No 49
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=2.2e-31 Score=250.00 Aligned_cols=423 Identities=15% Similarity=0.219 Sum_probs=301.7
Q ss_pred CeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCccccccccc
Q 004581 15 GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSV 94 (744)
Q Consensus 15 ~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (744)
+.+.++|.+. +..+.+.+|+..|.||+++||.-.++++...+..
T Consensus 85 ~V~Vl~n~ee-~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~----------------------------------- 128 (626)
T KOG2106|consen 85 AVGVLYNWEE-RSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTS----------------------------------- 128 (626)
T ss_pred cEEEEEeehh-hhcccccCCCCceEEEeecCCceeeccCcccccC-----------------------------------
Confidence 3566777655 3344567899999999999998433332110000
Q ss_pred ccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEec--CCCEEEEEe--CCCeEEEEEccCCceEEEEEe
Q 004581 95 VEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA--DGNMLYSGS--SDGYIRSWDAKLGYEIYRITV 170 (744)
Q Consensus 95 ~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~--dg~~l~t~~--~dg~i~vwd~~~~~~~~~~~~ 170 (744)
++ -.--.++|||..+-..+ +.+..-...|.|++||+ .|.+|.... .+..+.|||...+......+
T Consensus 129 --g~-----~~~phvriWdsv~L~TL---~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk- 197 (626)
T KOG2106|consen 129 --GR-----PLQPHVRIWDSVTLSTL---HVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVK- 197 (626)
T ss_pred --CC-----cCCCeeeecccccceee---eeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcce-
Confidence 00 00136999997644444 66666677899999997 345555543 35678999998887776666
Q ss_pred cCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEe---ecc-ccceeEEEEcCCCCEEEeecCCCeE
Q 004581 171 GLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAH---SFH-KGDVNALAAAPSHNRVFSTGSDGQV 245 (744)
Q Consensus 171 ~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~---~~h-~~~v~~l~~~~~~~~l~~~~~dg~i 245 (744)
.....|....|+|.+ .++.....+.+.+|+.+.+.+.++. ..+ ..-|.|++|.++|. +++|.++|.|
T Consensus 198 -------~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i 269 (626)
T KOG2106|consen 198 -------TSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNI 269 (626)
T ss_pred -------eccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceE
Confidence 466778899999988 6766777899999999987665442 222 36799999999996 8999999999
Q ss_pred EEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCC
Q 004581 246 ILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGV 325 (744)
Q Consensus 246 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 325 (744)
.+|+..+... .+....|...|.+++.. .+|
T Consensus 270 ~Iw~~~~~~~-----------------~k~~~aH~ggv~~L~~l---------r~G------------------------ 299 (626)
T KOG2106|consen 270 LIWSKGTNRI-----------------SKQVHAHDGGVFSLCML---------RDG------------------------ 299 (626)
T ss_pred EEEeCCCceE-----------------EeEeeecCCceEEEEEe---------cCc------------------------
Confidence 9999977552 34445899999999986 444
Q ss_pred cEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCC
Q 004581 326 PMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHA 405 (744)
Q Consensus 326 ~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 405 (744)
.|++|+.|..|..|| ...+...... .|. ....++.++-...+.++-+..+.+--=.+..
T Consensus 300 -tllSGgKDRki~~Wd-~~y~k~r~~e---lPe--~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~-------------- 358 (626)
T KOG2106|consen 300 -TLLSGGKDRKIILWD-DNYRKLRETE---LPE--QFGPIRTVAEGKGDILVGTTRNFILQGTLEN-------------- 358 (626)
T ss_pred -cEeecCccceEEecc-cccccccccc---Cch--hcCCeeEEecCCCcEEEeeccceEEEeeecC--------------
Confidence 577899999999999 3333322222 222 1244555544444434444444332222211
Q ss_pred CcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEE
Q 004581 406 STSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLII 484 (744)
Q Consensus 406 ~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~ 484 (744)
-.......|......++..|+...+++ +.++.+++|+ . ....|..... .++.++.|+|.| .+|.
T Consensus 359 ---~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~----~k~~wt~~~~------d~~~~~~fhpsg-~va~ 423 (626)
T KOG2106|consen 359 ---GFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D----HKLEWTKIIE------DPAECADFHPSG-VVAV 423 (626)
T ss_pred ---CceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C----CceeEEEEec------CceeEeeccCcc-eEEE
Confidence 112233455678889999998876666 7999999998 1 3345654432 278899999999 9999
Q ss_pred EeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcce-EEEEecCCC
Q 004581 485 AGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ-HWFISRLEG 563 (744)
Q Consensus 485 ~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~-~~~~~~~~~ 563 (744)
|...|...+.|.++..++..-. ...+++.++|+|+|.+||.|+.|+.|+||.++.... .......+.
T Consensus 424 Gt~~G~w~V~d~e~~~lv~~~~------------d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g 491 (626)
T KOG2106|consen 424 GTATGRWFVLDTETQDLVTIHT------------DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG 491 (626)
T ss_pred eeccceEEEEecccceeEEEEe------------cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC
Confidence 9999999999998855554444 378899999999999999999999999999975543 334444456
Q ss_pred CceeEEeecCCCCCeEEEEecCCeEEEE
Q 004581 564 ASVTAAGFPPQNNNVLIITTSSNQVYVF 591 (744)
Q Consensus 564 ~~v~~l~~sp~~~~~l~~~~~d~~v~vw 591 (744)
++|+++.||+ |+++|.+.+.|-.|..|
T Consensus 492 s~ithLDwS~-Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 492 SPITHLDWSS-DSQFLVSNSGDYEILYW 518 (626)
T ss_pred ceeEEeeecC-CCceEEeccCceEEEEE
Confidence 8999999999 99999999999999999
No 50
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-33 Score=236.79 Aligned_cols=284 Identities=19% Similarity=0.199 Sum_probs=239.7
Q ss_pred ecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCC
Q 004581 124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGS 202 (744)
Q Consensus 124 ~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~ 202 (744)
+.+.+|+++|..+.|+-||++.++++.|.+|++|+...|.+++++. +|...|..++.+.|+ .+++|+.|..
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs--------ghG~EVlD~~~s~Dnskf~s~GgDk~ 82 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS--------GHGHEVLDAALSSDNSKFASCGGDKA 82 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeec--------CCCceeeeccccccccccccCCCCce
Confidence 6788999999999999999999999999999999999999999998 799999999999998 9999999999
Q ss_pred EEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCc
Q 004581 203 VQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHD 282 (744)
Q Consensus 203 i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 282 (744)
+.+||+.+|+.++.+.+|.+.|+.++|+.+...+++|+.|.++++||.++... .+++.+......
T Consensus 83 v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~---------------ePiQildea~D~ 147 (307)
T KOG0316|consen 83 VQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF---------------EPIQILDEAKDG 147 (307)
T ss_pred EEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCC---------------CccchhhhhcCc
Confidence 99999999999999999999999999999999999999999999999988653 235566666777
Q ss_pred ceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCcc
Q 004581 283 VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPI 362 (744)
Q Consensus 283 v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (744)
|.++.++ ...++.|+.||+++.||++..+..
T Consensus 148 V~Si~v~-----------------------------------~heIvaGS~DGtvRtydiR~G~l~-------------- 178 (307)
T KOG0316|consen 148 VSSIDVA-----------------------------------EHEIVAGSVDGTVRTYDIRKGTLS-------------- 178 (307)
T ss_pred eeEEEec-----------------------------------ccEEEeeccCCcEEEEEeecceee--------------
Confidence 7777763 126888888998888888642200
Q ss_pred ccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceE
Q 004581 363 HLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPS 442 (744)
Q Consensus 363 ~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~ 442 (744)
T Consensus 179 -------------------------------------------------------------------------------- 178 (307)
T KOG0316|consen 179 -------------------------------------------------------------------------------- 178 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCc
Q 004581 443 LFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPP 522 (744)
Q Consensus 443 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (744)
....+ .+|+++.||+|++.+++++-|+++++.|-++|+++..+++ |...
T Consensus 179 ------------------sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkG-----------hkn~ 227 (307)
T KOG0316|consen 179 ------------------SDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKG-----------HKNM 227 (307)
T ss_pred ------------------hhhcC--CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcc-----------cccc
Confidence 00111 2899999999999999999999999999999999999999 5443
Q ss_pred --eEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEE
Q 004581 523 --ITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFD 592 (744)
Q Consensus 523 --i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd 592 (744)
-...+++.....+++|+.||.|++||+........++....-.|++++++| .-..|+++..- .+..|-
T Consensus 228 eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp-~~~~f~~A~~~-~~~~~~ 297 (307)
T KOG0316|consen 228 EYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHP-TMDDFITATGH-GDLFWY 297 (307)
T ss_pred eeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeeccc-CccceeEecCC-ceecee
Confidence 345677788889999999999999999999888777654433389999999 66667777644 455554
No 51
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4e-33 Score=244.98 Aligned_cols=290 Identities=20% Similarity=0.277 Sum_probs=232.1
Q ss_pred EeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccC-CceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcC
Q 004581 122 YHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL-GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS 199 (744)
Q Consensus 122 ~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~ 199 (744)
+...+.+|++.|..+.|+|+|..||||+.|..|.+|++.. .+-...++ +|.+.|..+.|.+|+ .+++++.
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk--------gHsgAVM~l~~~~d~s~i~S~gt 110 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLK--------GHSGAVMELHGMRDGSHILSCGT 110 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeec--------cccceeEeeeeccCCCEEEEecC
Confidence 4467789999999999999999999999999999999632 33344444 799999999999999 9999999
Q ss_pred CCCEEEEeCCCcceEEEeeccccceeEEEEcCCCC-EEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeee
Q 004581 200 TGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHN-RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA 278 (744)
Q Consensus 200 dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (744)
|.+|+.||+++|+.++.+++|..-|.++.-+.-|. ++.+++.|+++++||++.... + ....
T Consensus 111 Dk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-----------------~-~t~~ 172 (338)
T KOG0265|consen 111 DKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-----------------I-KTFE 172 (338)
T ss_pred CceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch-----------------h-hccc
Confidence 99999999999999999999999999998665564 555788899999999997652 1 1222
Q ss_pred ccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCC
Q 004581 279 HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQ 358 (744)
Q Consensus 279 h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~ 358 (744)
....++++.|. .+ .+.+.+|+-|+.|++||++...
T Consensus 173 ~kyqltAv~f~---------d~------------------------s~qv~sggIdn~ikvWd~r~~d------------ 207 (338)
T KOG0265|consen 173 NKYQLTAVGFK---------DT------------------------SDQVISGGIDNDIKVWDLRKND------------ 207 (338)
T ss_pred cceeEEEEEec---------cc------------------------ccceeeccccCceeeeccccCc------------
Confidence 34456777774 22 2378888888888888875311
Q ss_pred CCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcC
Q 004581 359 RVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDH 438 (744)
Q Consensus 359 ~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~ 438 (744)
T Consensus 208 -------------------------------------------------------------------------------- 207 (338)
T KOG0265|consen 208 -------------------------------------------------------------------------------- 207 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccC----CceeeeeccCcccccc
Q 004581 439 VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS----SELLHTFTPCREEHDR 514 (744)
Q Consensus 439 ~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~----~~~~~~~~~~~~~~~~ 514 (744)
.+ ..+.+|...|+.+..+|+|.++.+-+.|.++++||+.. ..++..+.++...
T Consensus 208 ---------------~~-----~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hn--- 264 (338)
T KOG0265|consen 208 ---------------GL-----YTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHN--- 264 (338)
T ss_pred ---------------ce-----EEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhh---
Confidence 00 22445666888888899999999999999999999853 2347777763221
Q ss_pred cCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEE
Q 004581 515 EIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVF 591 (744)
Q Consensus 515 ~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vw 591 (744)
.......++|||+++.+.+|+.|..+++||......+..+++ |.+.|.+++|+| ...+|.+++.|.+|++=
T Consensus 265 ----feknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpG-h~gsvn~~~Fhp-~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 265 ----FEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPG-HYGSVNEVDFHP-TEPIILSCSSDKTIYLG 335 (338)
T ss_pred ----hhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCC-cceeEEEeeecC-CCcEEEEeccCceeEee
Confidence 234456788999999999999999999999999999888987 567999999999 99999999999999863
No 52
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.8e-34 Score=255.80 Aligned_cols=262 Identities=18% Similarity=0.283 Sum_probs=222.9
Q ss_pred CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCC
Q 004581 98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS 177 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 177 (744)
..+++|..|++|+|||..+-..+ +.+.||++.|.|+.| |.+.+++|+.|.+|+|||+++|+++..+.
T Consensus 208 ~kiVSGlrDnTikiWD~n~~~c~---~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tli-------- 274 (499)
T KOG0281|consen 208 EKIVSGLRDNTIKIWDKNSLECL---KILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLI-------- 274 (499)
T ss_pred hhhhcccccCceEEeccccHHHH---HhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHh--------
Confidence 37999999999999999866665 899999999999999 56799999999999999999999999987
Q ss_pred CCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcc---eEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCc
Q 004581 178 GPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGT---LLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 254 (744)
Q Consensus 178 ~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~ 254 (744)
+|...|..+.|+ +|++++++.|.+|.+||+.... +...+.+|.+.|+.+.|+ .+++++++.|.+|++|++.+..
T Consensus 275 hHceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~e 351 (499)
T KOG0281|consen 275 HHCEAVLHLRFS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCE 351 (499)
T ss_pred hhcceeEEEEEe-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEecccee
Confidence 799999999998 5799999999999999998654 345678999999999996 4599999999999999999987
Q ss_pred CCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCC
Q 004581 255 IGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD 334 (744)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d 334 (744)
+ ++.+.+|...|-|+.+ .+.++++|+.|
T Consensus 352 f-----------------vRtl~gHkRGIAClQY-----------------------------------r~rlvVSGSSD 379 (499)
T KOG0281|consen 352 F-----------------VRTLNGHKRGIACLQY-----------------------------------RDRLVVSGSSD 379 (499)
T ss_pred e-----------------ehhhhcccccceehhc-----------------------------------cCeEEEecCCC
Confidence 4 8889999999988876 23389999999
Q ss_pred CeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEE
Q 004581 335 TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK 414 (744)
Q Consensus 335 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (744)
.+|++||+....
T Consensus 380 ntIRlwdi~~G~-------------------------------------------------------------------- 391 (499)
T KOG0281|consen 380 NTIRLWDIECGA-------------------------------------------------------------------- 391 (499)
T ss_pred ceEEEEeccccH--------------------------------------------------------------------
Confidence 999999886421
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEE
Q 004581 415 SKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVV 494 (744)
Q Consensus 415 ~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~ 494 (744)
.+ ..+.+|..-|.++.| |.+.+++|+.||+|+||
T Consensus 392 ---------------------------------------cL-----RvLeGHEeLvRciRF--d~krIVSGaYDGkikvW 425 (499)
T KOG0281|consen 392 ---------------------------------------CL-----RVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVW 425 (499)
T ss_pred ---------------------------------------HH-----HHHhchHHhhhheee--cCceeeeccccceEEEE
Confidence 11 345566667888998 78999999999999999
Q ss_pred EccCCc---------eeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcce
Q 004581 495 DVSSSE---------LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ 554 (744)
Q Consensus 495 d~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~ 554 (744)
|+..+. ++.++.. |.+.|..+.| |...+++++.|.+|.|||+.++..
T Consensus 426 dl~aaldpra~~~~~Cl~~lv~-----------hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 426 DLQAALDPRAPASTLCLRTLVE-----------HSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred ecccccCCcccccchHHHhhhh-----------ccceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence 997653 2333333 8999999999 666899999999999999987654
No 53
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1e-34 Score=259.47 Aligned_cols=273 Identities=17% Similarity=0.214 Sum_probs=229.2
Q ss_pred CCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCC
Q 004581 4 PGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEND 83 (744)
Q Consensus 4 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (744)
+++.+++|..|++|.|||.++..+++.+.||.+.|-|+.|..
T Consensus 206 DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~-------------------------------------- 247 (499)
T KOG0281|consen 206 DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE-------------------------------------- 247 (499)
T ss_pred cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--------------------------------------
Confidence 577899999999999999999999999999999999999876
Q ss_pred CCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCc
Q 004581 84 SDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY 163 (744)
Q Consensus 84 ~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~ 163 (744)
+.+++|+.|.+|+|||+++++.+ .++-+|...|..+.|+ ..+++|++.|.+|.|||+.+..
T Consensus 248 --------------rviisGSSDsTvrvWDv~tge~l---~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps 308 (499)
T KOG0281|consen 248 --------------RVIVSGSSDSTVRVWDVNTGEPL---NTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPT 308 (499)
T ss_pred --------------eEEEecCCCceEEEEeccCCchh---hHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCch
Confidence 47999999999999999999998 8999999999999997 4589999999999999997654
Q ss_pred eEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCC
Q 004581 164 EIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG 243 (744)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg 243 (744)
.+.... ...+|...|..+.|... ++++++.|.+|++|++.+++.+.++.+|...|.|+.+. ++++++|+.|.
T Consensus 309 ~it~rr-----VLvGHrAaVNvVdfd~k-yIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDn 380 (499)
T KOG0281|consen 309 DITLRR-----VLVGHRAAVNVVDFDDK-YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDN 380 (499)
T ss_pred HHHHHH-----HHhhhhhheeeeccccc-eEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCc
Confidence 322111 12279999999999744 99999999999999999999999999999999999985 88999999999
Q ss_pred eEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccC
Q 004581 244 QVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHL 323 (744)
Q Consensus 244 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 323 (744)
+|++||+..+. +++.+.+|..-|+++.|.
T Consensus 381 tIRlwdi~~G~-----------------cLRvLeGHEeLvRciRFd---------------------------------- 409 (499)
T KOG0281|consen 381 TIRLWDIECGA-----------------CLRVLEGHEELVRCIRFD---------------------------------- 409 (499)
T ss_pred eEEEEeccccH-----------------HHHHHhchHHhhhheeec----------------------------------
Confidence 99999999987 478899999999999982
Q ss_pred CCcEEEEecCCCeEEEEecCccCCCC--CcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccC
Q 004581 324 GVPMLISAGDDTKLFAYCANEFTKFS--PHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLEN 393 (744)
Q Consensus 324 ~~~~l~s~~~d~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~ 393 (744)
...+++|+.||+|++||+....... ....+......+.+.+..+.|..-..+-.+.+.++-+|++....
T Consensus 410 -~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 410 -NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred -CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCC
Confidence 2389999999999999998654332 12223333344556777777765544445567799999987654
No 54
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.4e-31 Score=264.43 Aligned_cols=286 Identities=23% Similarity=0.338 Sum_probs=239.0
Q ss_pred ecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCC
Q 004581 124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGS 202 (744)
Q Consensus 124 ~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~ 202 (744)
+.+.+|.++|.+++|+|++++|++++.||.|++|++.+++....+. .|...+..+.|++++ .+++++.+|.
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~~~~ 74 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK--------GHTGPVRDVAASADGTYLASGSSDKT 74 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe--------cCCcceeEEEECCCCCEEEEEcCCCe
Confidence 5677999999999999999999999999999999999888777776 678888999999999 8999999999
Q ss_pred EEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCc
Q 004581 203 VQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHD 282 (744)
Q Consensus 203 i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 282 (744)
|++||+.+++.+..+..|...|.++.|+++++++++++.|+.+.+|++.... ....+..|...
T Consensus 75 i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------~~~~~~~~~~~ 137 (289)
T cd00200 75 IRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-----------------CLTTLRGHTDW 137 (289)
T ss_pred EEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-----------------EEEEeccCCCc
Confidence 9999999888899999999999999999998888888889999999998544 23444566667
Q ss_pred ceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCcc
Q 004581 283 VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPI 362 (744)
Q Consensus 283 v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (744)
+.+++++ |++. ++++++.|+.|++||+....
T Consensus 138 i~~~~~~---------~~~~------------------------~l~~~~~~~~i~i~d~~~~~---------------- 168 (289)
T cd00200 138 VNSVAFS---------PDGT------------------------FVASSSQDGTIKLWDLRTGK---------------- 168 (289)
T ss_pred EEEEEEc---------CcCC------------------------EEEEEcCCCcEEEEEccccc----------------
Confidence 7777775 3332 56666667777777664211
Q ss_pred ccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceE
Q 004581 363 HLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPS 442 (744)
Q Consensus 363 ~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~ 442 (744)
T Consensus 169 -------------------------------------------------------------------------------- 168 (289)
T cd00200 169 -------------------------------------------------------------------------------- 168 (289)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCc
Q 004581 443 LFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPP 522 (744)
Q Consensus 443 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (744)
.. ..+..+...+.++.|+|+++.+++++.++.|++||+.+++.+..+.. |...
T Consensus 169 ---------~~-------~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-----------~~~~ 221 (289)
T cd00200 169 ---------CV-------ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG-----------HENG 221 (289)
T ss_pred ---------cc-------eeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhh-----------cCCc
Confidence 00 00112223678899999999999999999999999998888888866 7889
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEE
Q 004581 523 ITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFD 592 (744)
Q Consensus 523 i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd 592 (744)
+.+++|+|++.++++++.+|.|++|++.+++....+. .|...|.+++|+| ++++|++++.|+.|++|+
T Consensus 222 i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS-GHTNSVTSLAWSP-DGKRLASGSADGTIRIWD 289 (289)
T ss_pred eEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc-ccCCcEEEEEECC-CCCEEEEecCCCeEEecC
Confidence 9999999999999999889999999999888877776 4567899999999 899999999999999996
No 55
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.1e-31 Score=264.91 Aligned_cols=286 Identities=26% Similarity=0.355 Sum_probs=238.7
Q ss_pred EEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCCe
Q 004581 29 IVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGC 108 (744)
Q Consensus 29 ~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~ 108 (744)
.++++|..+|.+++|+|++ ++|++++.||.
T Consensus 3 ~~~~~h~~~i~~~~~~~~~--------------------------------------------------~~l~~~~~~g~ 32 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDG--------------------------------------------------KLLATGSGDGT 32 (289)
T ss_pred hHhcccCCCEEEEEEcCCC--------------------------------------------------CEEEEeecCcE
Confidence 4677899999999999998 58999999999
Q ss_pred EEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEE
Q 004581 109 VRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLS 188 (744)
Q Consensus 109 i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 188 (744)
|++|++.+++.. ..+..|...+.++.|+|++++|++++.||.|++||+.+++.+..+. .+...+.++.|
T Consensus 33 i~i~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~--------~~~~~i~~~~~ 101 (289)
T cd00200 33 IKVWDLETGELL---RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT--------GHTSYVSSVAF 101 (289)
T ss_pred EEEEEeeCCCcE---EEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEe--------ccCCcEEEEEE
Confidence 999999866544 6777899999999999999999999999999999999888888777 57789999999
Q ss_pred ecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCccccc
Q 004581 189 LRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVI 267 (744)
Q Consensus 189 ~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 267 (744)
++++ .+++++.++.|.+||+.+++.+..+..|...|.+++|+|++.++++++.|+.|++||+.....
T Consensus 102 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~------------ 169 (289)
T cd00200 102 SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC------------ 169 (289)
T ss_pred cCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc------------
Confidence 9998 666666799999999999999999999999999999999998888888899999999976542
Q ss_pred ceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCC
Q 004581 268 KKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTK 347 (744)
Q Consensus 268 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~ 347 (744)
...+..|...+.++.++ ++++ .+++++.|+.+++||+....
T Consensus 170 -----~~~~~~~~~~i~~~~~~---------~~~~------------------------~l~~~~~~~~i~i~d~~~~~- 210 (289)
T cd00200 170 -----VATLTGHTGEVNSVAFS---------PDGE------------------------KLLSSSSDGTIKLWDLSTGK- 210 (289)
T ss_pred -----ceeEecCccccceEEEC---------CCcC------------------------EEEEecCCCcEEEEECCCCc-
Confidence 34455666677777775 4433 66666667777777765311
Q ss_pred CCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEc
Q 004581 348 FSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTIS 427 (744)
Q Consensus 348 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 427 (744)
T Consensus 211 -------------------------------------------------------------------------------- 210 (289)
T cd00200 211 -------------------------------------------------------------------------------- 210 (289)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeecc
Q 004581 428 NSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTP 507 (744)
Q Consensus 428 ~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 507 (744)
.+ ..+..+...+.+++|+|++.++++++.+|.|++||+.+++.+..+..
T Consensus 211 --------------------------~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~ 259 (289)
T cd00200 211 --------------------------CL-----GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG 259 (289)
T ss_pred --------------------------ee-----cchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc
Confidence 00 11112233678899999988888888899999999998888888887
Q ss_pred CcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEE
Q 004581 508 CREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFN 548 (744)
Q Consensus 508 ~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd 548 (744)
|...|.+++|+|++++|++++.||.|++|+
T Consensus 260 -----------~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 260 -----------HTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred -----------cCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 888999999999999999999999999996
No 56
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.2e-32 Score=279.05 Aligned_cols=273 Identities=23% Similarity=0.350 Sum_probs=220.0
Q ss_pred CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEc-cCCceEEEEEecCCCCC
Q 004581 98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDA-KLGYEIYRITVGLGGLG 176 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~-~~~~~~~~~~~~~~~~~ 176 (744)
+.+++++.|+.+++|+...... ...+.+.+|...|.+++|+||++++++++.|++|+|||+ ..+..++.+.
T Consensus 172 ~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~------- 243 (456)
T KOG0266|consen 172 RALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK------- 243 (456)
T ss_pred CeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec-------
Confidence 6899999999999999975551 222777899999999999999999999999999999999 5568888888
Q ss_pred CCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcC
Q 004581 177 SGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESI 255 (744)
Q Consensus 177 ~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 255 (744)
+|...|++++|+|++ ++++|+.|++|+|||+++++++..+.+|...|++++|++++++|++++.|+.|++||+.++..
T Consensus 244 -gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 244 -GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSK 322 (456)
T ss_pred -CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCce
Confidence 799999999999999 999999999999999999999999999999999999999999999999999999999998761
Q ss_pred CCCCCCCcccccceEEEEeeeeeccCc--ceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecC
Q 004581 256 GPNDGLSSSEVIKKWIYVGSVRAHTHD--VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD 333 (744)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~ 333 (744)
. +...+..+... ++++.|+ |+++ ++++++.
T Consensus 323 ~---------------~~~~~~~~~~~~~~~~~~fs---------p~~~------------------------~ll~~~~ 354 (456)
T KOG0266|consen 323 L---------------CLKLLSGAENSAPVTSVQFS---------PNGK------------------------YLLSASL 354 (456)
T ss_pred e---------------eeecccCCCCCCceeEEEEC---------CCCc------------------------EEEEecC
Confidence 0 12233333333 5555554 3333 5566665
Q ss_pred CCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEE
Q 004581 334 DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQV 413 (744)
Q Consensus 334 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (744)
|+.+++|++.....
T Consensus 355 d~~~~~w~l~~~~~------------------------------------------------------------------ 368 (456)
T KOG0266|consen 355 DRTLKLWDLRSGKS------------------------------------------------------------------ 368 (456)
T ss_pred CCeEEEEEccCCcc------------------------------------------------------------------
Confidence 66666665543210
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCccc---ccccEEEEeeCCCEEEEEeCCCc
Q 004581 414 KSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKL---QFAHSMIFSYDSSQLIIAGHDRR 490 (744)
Q Consensus 414 ~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~i~~spd~~~l~~~~~dg~ 490 (744)
.. ....|. ..+.+..++++++++++|+.|+.
T Consensus 369 ---------------------------------------~~-------~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~ 402 (456)
T KOG0266|consen 369 ---------------------------------------VG-------TYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGS 402 (456)
T ss_pred ---------------------------------------ee-------eecccCCcceeEecccccCCCCeEEEEeCCce
Confidence 00 000111 12333445789999999999999
Q ss_pred EEEEEccCCceeeeeccCcccccccCCCC-CCceEEEEECCCCCEEEEEe--CCCcEEEEECC
Q 004581 491 IYVVDVSSSELLHTFTPCREEHDREIQPS-EPPITKMFTSSDGQWLAAVN--CFGDVYIFNLE 550 (744)
Q Consensus 491 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~spdg~~las~~--~dg~i~iwd~~ 550 (744)
|++||+.++..+..+.+ | ...+..+.++|..+++++++ .|+.+++|..+
T Consensus 403 v~~~~~~s~~~~~~l~~-----------h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 403 VYVWDSSSGGILQRLEG-----------HSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EEEEeCCccchhhhhcC-----------CCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 99999999999999998 8 88999999999999999998 68899999754
No 57
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.9e-33 Score=263.04 Aligned_cols=290 Identities=15% Similarity=0.235 Sum_probs=244.1
Q ss_pred eecccCccCcEEEEEEec-CCCEEEEEeCCCeEEEEEccC-CceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcC
Q 004581 123 HRSLPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAKL-GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS 199 (744)
Q Consensus 123 ~~~~~~h~~~V~~~~~s~-dg~~l~t~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~ 199 (744)
.+.+.+|...|+++.|.| .+.+|++++.|+.|+||++-. +++++++. +|..+|.+++|+++| .+++++.
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~--------gH~k~Vrd~~~s~~g~~fLS~sf 278 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK--------GHRKPVRDASFNNCGTSFLSASF 278 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh--------cchhhhhhhhccccCCeeeeeec
Confidence 378899999999999999 899999999999999999977 88999998 899999999999999 8999999
Q ss_pred CCCEEEEeCCCcceEEEeeccccceeEEEEcCCC-CEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeee
Q 004581 200 TGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA 278 (744)
Q Consensus 200 dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (744)
|+.|++||.++|+++..+.. ...+.|+.|.|++ +.+++|+.|+.|+.||++++.. ++....
T Consensus 279 D~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv-----------------vqeYd~ 340 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV-----------------VQEYDR 340 (503)
T ss_pred ceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH-----------------HHHHHh
Confidence 99999999999999999875 5678999999998 8889999999999999999874 566677
Q ss_pred ccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCC
Q 004581 279 HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQ 358 (744)
Q Consensus 279 h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~ 358 (744)
|-..|..+.|- ++++ .+++.+.|+++++|+......
T Consensus 341 hLg~i~~i~F~---------~~g~------------------------rFissSDdks~riWe~~~~v~----------- 376 (503)
T KOG0282|consen 341 HLGAILDITFV---------DEGR------------------------RFISSSDDKSVRIWENRIPVP----------- 376 (503)
T ss_pred hhhheeeeEEc---------cCCc------------------------eEeeeccCccEEEEEcCCCcc-----------
Confidence 88888888885 4454 888999899888887653110
Q ss_pred CCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcC
Q 004581 359 RVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDH 438 (744)
Q Consensus 359 ~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~ 438 (744)
+
T Consensus 377 --------------------------------------------------------------i----------------- 377 (503)
T KOG0282|consen 377 --------------------------------------------------------------I----------------- 377 (503)
T ss_pred --------------------------------------------------------------c-----------------
Confidence 0
Q ss_pred CceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCC---ceeeeeccCccccccc
Q 004581 439 VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSS---ELLHTFTPCREEHDRE 515 (744)
Q Consensus 439 ~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~~~~~~ 515 (744)
+ ...........++..+|+++++++-+.|+.|.+|.+... ...+.|+++..
T Consensus 378 ---------------k------~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v----- 431 (503)
T KOG0282|consen 378 ---------------K------NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV----- 431 (503)
T ss_pred ---------------h------hhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec-----
Confidence 0 000111114567888999999999999999999997532 34456666321
Q ss_pred CCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEE
Q 004581 516 IQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFD 592 (744)
Q Consensus 516 ~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd 592 (744)
.+--..+.|||||++|++|+.||.+.+||.++.+....++. |..++..+.|+|.....+|+++.||.|++|+
T Consensus 432 ----aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka-h~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 432 ----AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA-HDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ----cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc-CCcceEEEEecCCCcceeEecccCceeEecC
Confidence 45567889999999999999999999999999998888866 5679999999998888999999999999996
No 58
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.3e-31 Score=276.66 Aligned_cols=293 Identities=21% Similarity=0.297 Sum_probs=247.7
Q ss_pred ecccCc-cCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCc--eEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcC
Q 004581 124 RSLPRV-SGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY--EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS 199 (744)
Q Consensus 124 ~~~~~h-~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~ 199 (744)
..+.+| ...|.++.|+++|+.|++++.|+.+++|+..+++ ..+.+. +|...|..++|+|++ .+++++.
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~--------~h~~~v~~~~fs~d~~~l~s~s~ 223 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELS--------GHTRGVSDVAFSPDGSYLLSGSD 223 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccc--------ccccceeeeEECCCCcEEEEecC
Confidence 444444 7889999999999999999999999999997777 444443 799999999999999 9999999
Q ss_pred CCCEEEEeC-CCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeee
Q 004581 200 TGSVQFWDS-RHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA 278 (744)
Q Consensus 200 dg~i~vwd~-~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (744)
|++|++||+ ..+..++++.+|...|++++|+|+++++++|+.|++|++||++++. +...+.+
T Consensus 224 D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~-----------------~~~~l~~ 286 (456)
T KOG0266|consen 224 DKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE-----------------CVRKLKG 286 (456)
T ss_pred CceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe-----------------EEEeeec
Confidence 999999999 5568999999999999999999999999999999999999999866 4889999
Q ss_pred ccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCC
Q 004581 279 HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQ 358 (744)
Q Consensus 279 h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~ 358 (744)
|...|.+++|+ +++. .|++++.|+.|++||+.+....
T Consensus 287 hs~~is~~~f~---------~d~~------------------------~l~s~s~d~~i~vwd~~~~~~~---------- 323 (456)
T KOG0266|consen 287 HSDGISGLAFS---------PDGN------------------------LLVSASYDGTIRVWDLETGSKL---------- 323 (456)
T ss_pred cCCceEEEEEC---------CCCC------------------------EEEEcCCCccEEEEECCCCcee----------
Confidence 99999999997 5554 9999999999999999763200
Q ss_pred CCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcC
Q 004581 359 RVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDH 438 (744)
Q Consensus 359 ~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~ 438 (744)
++.
T Consensus 324 ----------------------------------------------------------------~~~------------- 326 (456)
T KOG0266|consen 324 ----------------------------------------------------------------CLK------------- 326 (456)
T ss_pred ----------------------------------------------------------------eee-------------
Confidence 000
Q ss_pred CceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCC
Q 004581 439 VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQP 518 (744)
Q Consensus 439 ~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 518 (744)
. + ....... .++++.|+|++++|+++..|+.+++||+..+..+.++.+
T Consensus 327 -------------~-----~--~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~----------- 374 (456)
T KOG0266|consen 327 -------------L-----L--SGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTG----------- 374 (456)
T ss_pred -------------c-----c--cCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecc-----------
Confidence 0 0 0001111 578999999999999999999999999999999999998
Q ss_pred CCC---ceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEe--cCCeEEEEEc
Q 004581 519 SEP---PITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITT--SSNQVYVFDV 593 (744)
Q Consensus 519 ~~~---~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~--~d~~v~vwd~ 593 (744)
|.. .+.+...+++++++++++.|+.|++||+.++.....+..+....+..++++| ..+++++++ .|+.+++|..
T Consensus 375 ~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~-~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 375 HSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHP-TENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred cCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCC-CcCeeeecCcCCCceEEEecC
Confidence 444 4555667889999999999999999999998877777653157899999999 999999998 6889999976
Q ss_pred C
Q 004581 594 E 594 (744)
Q Consensus 594 ~ 594 (744)
+
T Consensus 454 ~ 454 (456)
T KOG0266|consen 454 D 454 (456)
T ss_pred C
Confidence 4
No 59
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=4.6e-31 Score=294.65 Aligned_cols=320 Identities=13% Similarity=0.179 Sum_probs=244.6
Q ss_pred CCeEEEEEccCCceeEEe-----eccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCccc
Q 004581 14 DGSVSEWDLYDLKQKIVL-----QSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDE 88 (744)
Q Consensus 14 d~~i~iwd~~~~~~~~~~-----~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (744)
+|.+++|+..+.+....+ ..|.+.|.+++|+|+|
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg----------------------------------------- 495 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDG----------------------------------------- 495 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCC-----------------------------------------
Confidence 677888988876655443 3589999999999999
Q ss_pred ccccccccCCeEEEEecCCeEEEEEecCC----Ccee-EeecccCccCcEEEEEEec-CCCEEEEEeCCCeEEEEEccCC
Q 004581 89 LHEQSVVEDRRVALACDDGCVRIYRITDS----DELI-YHRSLPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAKLG 162 (744)
Q Consensus 89 ~~~~~~~~~~~la~~~~dg~i~iwd~~~~----~~~~-~~~~~~~h~~~V~~~~~s~-dg~~l~t~~~dg~i~vwd~~~~ 162 (744)
++||+|+.|+.|+||+.... .... ....+. +...|.+++|++ ++.+|++++.||+|++||+.++
T Consensus 496 ---------~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~ 565 (793)
T PLN00181 496 ---------EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS 565 (793)
T ss_pred ---------CEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC
Confidence 68999999999999997531 1110 112232 346899999987 4789999999999999999999
Q ss_pred ceEEEEEecCCCCCCCCceeEEEEEEec-CC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEc-CCCCEEEee
Q 004581 163 YEIYRITVGLGGLGSGPELCIWSLLSLR-CG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAA-PSHNRVFST 239 (744)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~-~~~~~l~~~ 239 (744)
+.+..+. +|...|++++|+| ++ .|++|+.|++|++||++++..+..+..+ ..|.++.|+ +++.+|++|
T Consensus 566 ~~~~~~~--------~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 566 QLVTEMK--------EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFG 636 (793)
T ss_pred eEEEEec--------CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEE
Confidence 8888886 7999999999997 55 8999999999999999999999888764 689999995 578999999
Q ss_pred cCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccc
Q 004581 240 GSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHK 319 (744)
Q Consensus 240 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (744)
+.||.|++||+..... ....+.+|...|.++.|. ++
T Consensus 637 s~dg~I~iwD~~~~~~----------------~~~~~~~h~~~V~~v~f~----------~~------------------ 672 (793)
T PLN00181 637 SADHKVYYYDLRNPKL----------------PLCTMIGHSKTVSYVRFV----------DS------------------ 672 (793)
T ss_pred eCCCeEEEEECCCCCc----------------cceEecCCCCCEEEEEEe----------CC------------------
Confidence 9999999999976431 134567899999999984 22
Q ss_pred cccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCC
Q 004581 320 WAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRS 399 (744)
Q Consensus 320 w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~ 399 (744)
..|++++.|+.|++||+.......
T Consensus 673 ------~~lvs~s~D~~ikiWd~~~~~~~~-------------------------------------------------- 696 (793)
T PLN00181 673 ------STLVSSSTDNTLKLWDLSMSISGI-------------------------------------------------- 696 (793)
T ss_pred ------CEEEEEECCCEEEEEeCCCCcccc--------------------------------------------------
Confidence 389999999999999986311000
Q ss_pred CCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCC
Q 004581 400 SSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS 479 (744)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~ 479 (744)
+ ...+ ..+.+|...+..++|+|++
T Consensus 697 -----------------------------~----------------------~~~l-----~~~~gh~~~i~~v~~s~~~ 720 (793)
T PLN00181 697 -----------------------------N----------------------ETPL-----HSFMGHTNVKNFVGLSVSD 720 (793)
T ss_pred -----------------------------C----------------------Ccce-----EEEcCCCCCeeEEEEcCCC
Confidence 0 0000 1122344467788899999
Q ss_pred CEEEEEeCCCcEEEEEccCCceeeeeccCc--ccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEEC
Q 004581 480 SQLIIAGHDRRIYVVDVSSSELLHTFTPCR--EEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL 549 (744)
Q Consensus 480 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~ 549 (744)
.+|++|+.|+.|++|+......+..+.... .........|...|.+++|+|++.+|++|+.||.|+||++
T Consensus 721 ~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 721 GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999999999987655443322110 0000111235678999999999999999999999999986
No 60
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=8.2e-31 Score=292.66 Aligned_cols=305 Identities=14% Similarity=0.193 Sum_probs=233.2
Q ss_pred CCeEEEEEecCCCceeE--eecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCC----ce----EEEEEecCCCC
Q 004581 106 DGCVRIYRITDSDELIY--HRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG----YE----IYRITVGLGGL 175 (744)
Q Consensus 106 dg~i~iwd~~~~~~~~~--~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~----~~----~~~~~~~~~~~ 175 (744)
+|.+++|+...-..... ...+..|.+.|.+++|+|+|++||+|+.|+.|+|||+.+. .. ...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~------- 529 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL------- 529 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-------
Confidence 67788888763322111 1234569999999999999999999999999999997542 11 1111
Q ss_pred CCCCceeEEEEEEecC-C-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcC-CCCEEEeecCCCeEEEEEccc
Q 004581 176 GSGPELCIWSLLSLRC-G-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAP-SHNRVFSTGSDGQVILYKASC 252 (744)
Q Consensus 176 ~~~~~~~v~~~~~~~~-~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~~~~~dg~i~iw~~~~ 252 (744)
.+...+.+++|++. + +|++++.||+|++||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.||+|++||+..
T Consensus 530 --~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~ 607 (793)
T PLN00181 530 --ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ 607 (793)
T ss_pred --cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC
Confidence 23457889999875 3 899999999999999999999999999999999999997 788999999999999999987
Q ss_pred CcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEec
Q 004581 253 ESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG 332 (744)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~ 332 (744)
+. .+..+..+ ..+.++.|. .+++..|++|+
T Consensus 608 ~~-----------------~~~~~~~~-~~v~~v~~~--------------------------------~~~g~~latgs 637 (793)
T PLN00181 608 GV-----------------SIGTIKTK-ANICCVQFP--------------------------------SESGRSLAFGS 637 (793)
T ss_pred Cc-----------------EEEEEecC-CCeEEEEEe--------------------------------CCCCCEEEEEe
Confidence 54 13334333 467777764 11233788888
Q ss_pred CCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEE
Q 004581 333 DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQ 412 (744)
Q Consensus 333 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (744)
.|+.|++||+.....
T Consensus 638 ~dg~I~iwD~~~~~~----------------------------------------------------------------- 652 (793)
T PLN00181 638 ADHKVYYYDLRNPKL----------------------------------------------------------------- 652 (793)
T ss_pred CCCeEEEEECCCCCc-----------------------------------------------------------------
Confidence 888888888753110
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEE
Q 004581 413 VKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIY 492 (744)
Q Consensus 413 ~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~ 492 (744)
.+ ..+.+|...|.++.|. ++.+|++++.|+.|+
T Consensus 653 -----------------------------------------~~-----~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ik 685 (793)
T PLN00181 653 -----------------------------------------PL-----CTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLK 685 (793)
T ss_pred -----------------------------------------cc-----eEecCCCCCEEEEEEe-CCCEEEEEECCCEEE
Confidence 00 0112334467778885 778899999999999
Q ss_pred EEEccC------CceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEe-------
Q 004581 493 VVDVSS------SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFIS------- 559 (744)
Q Consensus 493 v~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~------- 559 (744)
+||+.. .+++.++.+ |...+..++|+|++++||+|+.|+.|++|+...........
T Consensus 686 iWd~~~~~~~~~~~~l~~~~g-----------h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~ 754 (793)
T PLN00181 686 LWDLSMSISGINETPLHSFMG-----------HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPV 754 (793)
T ss_pred EEeCCCCccccCCcceEEEcC-----------CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcc
Confidence 999863 356777877 89999999999999999999999999999987654432221
Q ss_pred -----cCCCCceeEEeecCCCCCeEEEEecCCeEEEEEc
Q 004581 560 -----RLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDV 593 (744)
Q Consensus 560 -----~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~ 593 (744)
..+...|.+++|+| ++.+|++++.||.|+||++
T Consensus 755 ~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 755 SGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEEEEec
Confidence 11335699999999 9999999999999999986
No 61
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.5e-32 Score=234.59 Aligned_cols=289 Identities=19% Similarity=0.267 Sum_probs=247.8
Q ss_pred ecccCccCcEEEEEEec---CCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcC
Q 004581 124 RSLPRVSGRVLSVTWSA---DGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS 199 (744)
Q Consensus 124 ~~~~~h~~~V~~~~~s~---dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~ 199 (744)
.+..+|..+|..++||| +|-+|++++.|+.-.+-+-++|.-+.++. +|.+.||+.....+. +-++++.
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfe--------ghkgavw~~~l~~na~~aasaaa 79 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFE--------GHKGAVWSATLNKNATRAASAAA 79 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeee--------ccCcceeeeecCchhhhhhhhcc
Confidence 45679999999999985 88999999999999988889999999998 899999999988877 7888999
Q ss_pred CCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeec
Q 004581 200 TGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAH 279 (744)
Q Consensus 200 dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 279 (744)
|=+-++||.-+|..+.++. |..-|.+++|+.|.++|++|+.+..+++||++.... +...+.+|
T Consensus 80 dftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A----------------pp~E~~gh 142 (334)
T KOG0278|consen 80 DFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA----------------PPKEISGH 142 (334)
T ss_pred cchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCC----------------CchhhcCC
Confidence 9999999999999998886 788999999999999999999999999999988764 24567899
Q ss_pred cCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCC
Q 004581 280 THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQR 359 (744)
Q Consensus 280 ~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~ 359 (744)
+..|+.+.|. ..++ .+++.+.|++||+||.++...
T Consensus 143 tg~Ir~v~wc---------~eD~------------------------~iLSSadd~tVRLWD~rTgt~------------ 177 (334)
T KOG0278|consen 143 TGGIRTVLWC---------HEDK------------------------CILSSADDKTVRLWDHRTGTE------------ 177 (334)
T ss_pred CCcceeEEEe---------ccCc------------------------eEEeeccCCceEEEEeccCcE------------
Confidence 9999999986 3332 788889999999999987442
Q ss_pred CccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCC
Q 004581 360 VPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHV 439 (744)
Q Consensus 360 ~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~ 439 (744)
+..+..+ .++.++.++++|++|.++..+
T Consensus 178 --------------------------------------------------v~sL~~~--s~VtSlEvs~dG~ilTia~gs 205 (334)
T KOG0278|consen 178 --------------------------------------------------VQSLEFN--SPVTSLEVSQDGRILTIAYGS 205 (334)
T ss_pred --------------------------------------------------EEEEecC--CCCcceeeccCCCEEEEecCc
Confidence 2222222 678899999999999999999
Q ss_pred ceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeee-ccCcccccccCCC
Q 004581 440 KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTF-TPCREEHDREIQP 518 (744)
Q Consensus 440 ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~ 518 (744)
.|+.|+... ..+ ++..+++. .|.+..++|+...+++|++|..++.||..+|+.+..+ ++
T Consensus 206 sV~Fwdaks----f~~--lKs~k~P~---nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkg----------- 265 (334)
T KOG0278|consen 206 SVKFWDAKS----FGL--LKSYKMPC---NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKG----------- 265 (334)
T ss_pred eeEEecccc----ccc--eeeccCcc---ccccccccCCCceEEecCcceEEEEEeccCCceeeecccC-----------
Confidence 999999865 111 22333433 6888899999999999999999999999999988886 66
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcce
Q 004581 519 SEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ 554 (744)
Q Consensus 519 ~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~ 554 (744)
|.++|.++.|||||...|+||.||+|++|....++.
T Consensus 266 h~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 266 HFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred CCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 999999999999999999999999999999876543
No 62
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=9.4e-31 Score=226.04 Aligned_cols=293 Identities=15% Similarity=0.161 Sum_probs=232.3
Q ss_pred EeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCCeE
Q 004581 30 VLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCV 109 (744)
Q Consensus 30 ~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i 109 (744)
.++||..+++.+.++.+| .+|.+++.|.++
T Consensus 5 ~l~GHERplTqiKyN~eG--------------------------------------------------DLlFscaKD~~~ 34 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREG--------------------------------------------------DLLFSCAKDSTP 34 (327)
T ss_pred ccccCccccceEEecCCC--------------------------------------------------cEEEEecCCCCc
Confidence 478999999999999999 699999999999
Q ss_pred EEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEe
Q 004581 110 RIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSL 189 (744)
Q Consensus 110 ~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 189 (744)
.+|-..+++.+ -++.||++.|.|+..+-+.+.|+||+.|.++++||+++|+++..++ ....|..+.|+
T Consensus 35 ~vw~s~nGerl---Gty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k---------~~~~Vk~~~F~ 102 (327)
T KOG0643|consen 35 TVWYSLNGERL---GTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK---------TNSPVKRVDFS 102 (327)
T ss_pred eEEEecCCcee---eeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee---------cCCeeEEEeec
Confidence 99998888888 8999999999999999999999999999999999999999999997 67899999999
Q ss_pred cCCeEEEEcC------CCCEEEEeCC-------CcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCC
Q 004581 190 RCGTLVSADS------TGSVQFWDSR-------HGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 256 (744)
Q Consensus 190 ~~~~l~s~~~------dg~i~vwd~~-------~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 256 (744)
.+|.++..+. .+.|.++|++ ..++...+..+...++.+.|.|-+++|++|..||.|.+||++++..
T Consensus 103 ~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~- 181 (327)
T KOG0643|consen 103 FGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE- 181 (327)
T ss_pred cCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce-
Confidence 9995444433 3568999988 4556778888889999999999999999999999999999998753
Q ss_pred CCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCe
Q 004581 257 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK 336 (744)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~ 336 (744)
.+...+.|++.|+.+.++ +|.. ++++++.|.+
T Consensus 182 ---------------~v~s~~~h~~~Ind~q~s---------~d~T------------------------~FiT~s~Dtt 213 (327)
T KOG0643|consen 182 ---------------LVDSDEEHSSKINDLQFS---------RDRT------------------------YFITGSKDTT 213 (327)
T ss_pred ---------------eeechhhhcccccccccc---------CCcc------------------------eEEecccCcc
Confidence 355667899999999997 5555 9999999999
Q ss_pred EEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEec
Q 004581 337 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK 416 (744)
Q Consensus 337 i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (744)
-++||..+........ .
T Consensus 214 akl~D~~tl~v~Kty~--------------------------------------------------------------t- 230 (327)
T KOG0643|consen 214 AKLVDVRTLEVLKTYT--------------------------------------------------------------T- 230 (327)
T ss_pred ceeeeccceeeEEEee--------------------------------------------------------------e-
Confidence 9999998754322111 1
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCC---Cc----eEEeeeccCCcccccccEEEEeeCCCEEEEEeCCC
Q 004581 417 ASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVG---QG----EWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR 489 (744)
Q Consensus 417 ~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~---~~----~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg 489 (744)
..++.+.+++|....++.+.....+=........+ .+ ++.-+-..+.+|..+|++++|+|||+..++|++||
T Consensus 231 -e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG 309 (327)
T KOG0643|consen 231 -ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDG 309 (327)
T ss_pred -cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCc
Confidence 14566666666555555532222111111000000 00 11112256789999999999999999999999999
Q ss_pred cEEEEEcc
Q 004581 490 RIYVVDVS 497 (744)
Q Consensus 490 ~i~v~d~~ 497 (744)
.|++.-++
T Consensus 310 ~VR~h~Fd 317 (327)
T KOG0643|consen 310 YVRLHHFD 317 (327)
T ss_pred eEEEEEec
Confidence 99998765
No 63
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-29 Score=222.35 Aligned_cols=296 Identities=17% Similarity=0.284 Sum_probs=228.9
Q ss_pred ecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcC--C
Q 004581 124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS--T 200 (744)
Q Consensus 124 ~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~--d 200 (744)
+.+..-.+.|+++.|+++|..|++++.|.++++||..+|+++..+. .+...+..++|.... .++.++. |
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~--------skkyG~~~~~Fth~~~~~i~sStk~d 79 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN--------SKKYGVDLACFTHHSNTVIHSSTKED 79 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee--------cccccccEEEEecCCceEEEccCCCC
Confidence 5566667899999999999999999999999999999999999998 466778888888666 6666665 8
Q ss_pred CCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeecc
Q 004581 201 GSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHT 280 (744)
Q Consensus 201 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 280 (744)
.+|+.-++.+.+.++.+.||...|.+|+.+|-+..+++++.|++|++||++.... ...+....
T Consensus 80 ~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c-----------------qg~l~~~~ 142 (311)
T KOG1446|consen 80 DTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC-----------------QGLLNLSG 142 (311)
T ss_pred CceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC-----------------ceEEecCC
Confidence 8999999999999999999999999999999999999999999999999986541 11110000
Q ss_pred CcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCC
Q 004581 281 HDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRV 360 (744)
Q Consensus 281 ~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~ 360 (744)
T Consensus 143 -------------------------------------------------------------------------------- 142 (311)
T KOG1446|consen 143 -------------------------------------------------------------------------------- 142 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCC-
Q 004581 361 PIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHV- 439 (744)
Q Consensus 361 ~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~- 439 (744)
-..+||+|.|-++|++..+
T Consensus 143 ------------------------------------------------------------~pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 143 ------------------------------------------------------------RPIAAFDPEGLIFALANGSE 162 (311)
T ss_pred ------------------------------------------------------------CcceeECCCCcEEEEecCCC
Confidence 1123455555555554222
Q ss_pred ceEEEEeecCCCCC-ceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCC
Q 004581 440 KPSLFELKKGKVGQ-GEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQP 518 (744)
Q Consensus 440 ~v~l~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 518 (744)
.|++||++.-+.+. ..+.+.. ......+.+.|||||++++.++..+.+++.|.-+|..+.++.....
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~----~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~-------- 230 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITD----NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPN-------- 230 (311)
T ss_pred eEEEEEecccCCCCceeEccCC----CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccC--------
Confidence 55666655432222 1111110 2233688999999999999999999999999999999999887322
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCcc
Q 004581 519 SEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 598 (744)
Q Consensus 519 ~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~ 598 (744)
...--...+|+||++++.+++.||+|++|+++++.....+.+.+..++.++.|+| ++...++.+..+.+|=.+..++
T Consensus 231 ~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP---~~~mf~sa~s~l~fw~p~~~~~ 307 (311)
T KOG1446|consen 231 AGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNP---RYAMFVSASSNLVFWLPDEDAL 307 (311)
T ss_pred CCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCC---ceeeeeecCceEEEEecccccc
Confidence 1112257789999999999999999999999999999888887788999999998 4455555677899998776654
Q ss_pred c
Q 004581 599 G 599 (744)
Q Consensus 599 ~ 599 (744)
.
T Consensus 308 ~ 308 (311)
T KOG1446|consen 308 P 308 (311)
T ss_pred C
Confidence 3
No 64
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=2.8e-30 Score=218.80 Aligned_cols=284 Identities=14% Similarity=0.186 Sum_probs=234.3
Q ss_pred ceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEec
Q 004581 26 KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACD 105 (744)
Q Consensus 26 ~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 105 (744)
+.+..+.+|+++|.++.|+-|| ++.++++.
T Consensus 8 kr~~~l~~~qgaV~avryN~dG--------------------------------------------------nY~ltcGs 37 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDG--------------------------------------------------NYCLTCGS 37 (307)
T ss_pred hhceeecccccceEEEEEccCC--------------------------------------------------CEEEEcCC
Confidence 4566789999999999999999 68999999
Q ss_pred CCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEE
Q 004581 106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWS 185 (744)
Q Consensus 106 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 185 (744)
|.+|++|+...+..+ +++.+|...|..++.+.|...+++|+.|..+.+||+++|+.++++. +|...|..
T Consensus 38 drtvrLWNp~rg~li---ktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~r--------gH~aqVNt 106 (307)
T KOG0316|consen 38 DRTVRLWNPLRGALI---KTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFR--------GHLAQVNT 106 (307)
T ss_pred CceEEeeccccccee---eeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecc--------cccceeeE
Confidence 999999999877666 9999999999999999999999999999999999999999999999 89999999
Q ss_pred EEEecCC-eEEEEcCCCCEEEEeCCC--cceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCC
Q 004581 186 LLSLRCG-TLVSADSTGSVQFWDSRH--GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLS 262 (744)
Q Consensus 186 ~~~~~~~-~l~s~~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 262 (744)
+.|+.+. .+++|+.|.++++||.++ .++++.+......|.++..+ +..|++|+.||+++.||++.+..
T Consensus 107 V~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l------- 177 (307)
T KOG0316|consen 107 VRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTL------- 177 (307)
T ss_pred EEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeeccee-------
Confidence 9999988 899999999999999876 57889998888999999987 55799999999999999998763
Q ss_pred cccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEec
Q 004581 263 SSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCA 342 (744)
Q Consensus 263 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~ 342 (744)
......++|+++.|+ +++. ..+.++.|+++++.|-
T Consensus 178 ------------~sDy~g~pit~vs~s---------~d~n------------------------c~La~~l~stlrLlDk 212 (307)
T KOG0316|consen 178 ------------SSDYFGHPITSVSFS---------KDGN------------------------CSLASSLDSTLRLLDK 212 (307)
T ss_pred ------------ehhhcCCcceeEEec---------CCCC------------------------EEEEeeccceeeeccc
Confidence 224456788888886 5554 7888888888888877
Q ss_pred CccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeE
Q 004581 343 NEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKII 422 (744)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 422 (744)
.+.+.+....
T Consensus 213 ~tGklL~sYk---------------------------------------------------------------------- 222 (307)
T KOG0316|consen 213 ETGKLLKSYK---------------------------------------------------------------------- 222 (307)
T ss_pred chhHHHHHhc----------------------------------------------------------------------
Confidence 6543221110
Q ss_pred EEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccc--cccEEEEeeCCCEEEEEeCCCcEEEEEccCCc
Q 004581 423 CSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQ--FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE 500 (744)
Q Consensus 423 ~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~ 500 (744)
+|.. .-...+++.....+++|++||.|++||+.+..
T Consensus 223 ------------------------------------------Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 223 ------------------------------------------GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred ------------------------------------------ccccceeeeeeeecccceeEEeccCCceEEEEEeccce
Confidence 0000 11233455566788999999999999999999
Q ss_pred eeeeeccCcccccccCCCCCCc-eEEEEECCCCCEEEEEeCCCcEEEEE
Q 004581 501 LLHTFTPCREEHDREIQPSEPP-ITKMFTSSDGQWLAAVNCFGDVYIFN 548 (744)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~-i~~l~~spdg~~las~~~dg~i~iwd 548 (744)
.+..+.. +... |+++.++|.-..|.++...+ +..|.
T Consensus 261 ~~sk~~~-----------~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~~ 297 (307)
T KOG0316|consen 261 QISKLSV-----------VSTVIVTDLSCHPTMDDFITATGHG-DLFWY 297 (307)
T ss_pred eeeeecc-----------CCceeEEeeecccCccceeEecCCc-eecee
Confidence 9888887 5665 89999999888887775444 55554
No 65
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=4.5e-30 Score=221.17 Aligned_cols=277 Identities=17% Similarity=0.196 Sum_probs=217.2
Q ss_pred ecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCC
Q 004581 124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTG 201 (744)
Q Consensus 124 ~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg 201 (744)
+.+++|.+.|.+++|+.+|..|++|+.|+++.+|+++.++...... .++|...|-.++|.|.. ++++++.|.
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~------~~gh~~svdql~w~~~~~d~~atas~dk 87 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELV------YRGHTDSVDQLCWDPKHPDLFATASGDK 87 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhc------ccCCCcchhhheeCCCCCcceEEecCCc
Confidence 6677999999999999999999999999999999998875544433 23788999999999877 899999999
Q ss_pred CEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccC
Q 004581 202 SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTH 281 (744)
Q Consensus 202 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 281 (744)
+|++||++.++++.......+.+ -+.|+|+|+++++++.|..|.+.|.++.+. ........
T Consensus 88 ~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~------------------~~~~~~~~ 148 (313)
T KOG1407|consen 88 TIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKI------------------VNEEQFKF 148 (313)
T ss_pred eEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccce------------------eehhcccc
Confidence 99999999999999887655544 589999999999999999999999887551 11111111
Q ss_pred cceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCc
Q 004581 282 DVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVP 361 (744)
Q Consensus 282 ~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~ 361 (744)
.+..++|
T Consensus 149 e~ne~~w------------------------------------------------------------------------- 155 (313)
T KOG1407|consen 149 EVNEISW------------------------------------------------------------------------- 155 (313)
T ss_pred eeeeeee-------------------------------------------------------------------------
Confidence 2222222
Q ss_pred cccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCE-EEEEcCCc
Q 004581 362 IHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGML-FAYSDHVK 440 (744)
Q Consensus 362 ~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-la~~~~~~ 440 (744)
+.++.+ +++...|.
T Consensus 156 -----------------------------------------------------------------~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 156 -----------------------------------------------------------------NNSNDLFFLTNGLGC 170 (313)
T ss_pred -----------------------------------------------------------------cCCCCEEEEecCCce
Confidence 111111 11122233
Q ss_pred eEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCC
Q 004581 441 PSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSE 520 (744)
Q Consensus 441 v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (744)
|.|..... -..+ ..+..|.....||.|+|+|+++|+|+.|..+.+||++..-+++.+.. +.
T Consensus 171 v~ILsyps---Lkpv-----~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isR-----------ld 231 (313)
T KOG1407|consen 171 VEILSYPS---LKPV-----QSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISR-----------LD 231 (313)
T ss_pred EEEEeccc---cccc-----cccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecc-----------cc
Confidence 33332221 0011 33445666788999999999999999999999999998888899988 89
Q ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecC
Q 004581 521 PPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSS 585 (744)
Q Consensus 521 ~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d 585 (744)
-+|..+.||.||++||+|+.|..|-|=++++|..++.++ +.++-..++|+| ...+||.+++|
T Consensus 232 wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~--~~~~t~tVAWHP-k~~LLAyA~dd 293 (313)
T KOG1407|consen 232 WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP--CEGPTFTVAWHP-KRPLLAYACDD 293 (313)
T ss_pred CceEEEEeccCcceeeccCccceEEeEecccCCeEEEee--ccCCceeEEecC-CCceeeEEecC
Confidence 999999999999999999999999999999999999987 456889999999 98999999876
No 66
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.2e-30 Score=252.84 Aligned_cols=356 Identities=17% Similarity=0.253 Sum_probs=266.0
Q ss_pred CCCCCe-eEEecCCCeEEEEEccCCc------eeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCC
Q 004581 2 GLPGGR-LFSSSIDGSVSEWDLYDLK------QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDD 74 (744)
Q Consensus 2 ~~~~~~-l~~~~~d~~i~iwd~~~~~------~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (744)
..|+++ |++||.||.|++|+...-. .+.+++.|..+|..++...++
T Consensus 33 da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~--------------------------- 85 (735)
T KOG0308|consen 33 DAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNG--------------------------- 85 (735)
T ss_pred cCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCC---------------------------
Confidence 356666 9999999999999986432 367889999999999999998
Q ss_pred CcCccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEE-ecCCCEEEEEeCCCe
Q 004581 75 HETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTW-SADGNMLYSGSSDGY 153 (744)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~-s~dg~~l~t~~~dg~ 153 (744)
+.|++++.|-+|++|+...+. -.+..++..|...|.|+++ -++...+|+|+-|+.
T Consensus 86 -----------------------~tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~ 141 (735)
T KOG0308|consen 86 -----------------------KTLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRK 141 (735)
T ss_pred -----------------------CceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCceeEEecCCCcc
Confidence 589999999999999998553 3344899999999999999 888899999999999
Q ss_pred EEEEEccCCc--eEEEEEecC-CCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEE
Q 004581 154 IRSWDAKLGY--EIYRITVGL-GGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAA 229 (744)
Q Consensus 154 i~vwd~~~~~--~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~ 229 (744)
|.+||+++|. .+..+..-. .....++...|++++..+.| .+++|+..+.|++||.++++.+..+++|+..|.++..
T Consensus 142 IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~ 221 (735)
T KOG0308|consen 142 IFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLV 221 (735)
T ss_pred EEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEE
Confidence 9999999883 343333211 12223788999999999999 7899999999999999999999999999999999999
Q ss_pred cCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCC
Q 004581 230 APSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGR 309 (744)
Q Consensus 230 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~ 309 (744)
++||+.+++++.||+|++||+.... ++.++..|...|.++..++
T Consensus 222 ~dDGt~~ls~sSDgtIrlWdLgqQr-----------------Cl~T~~vH~e~VWaL~~~~------------------- 265 (735)
T KOG0308|consen 222 NDDGTRLLSASSDGTIRLWDLGQQR-----------------CLATYIVHKEGVWALQSSP------------------- 265 (735)
T ss_pred cCCCCeEeecCCCceEEeeeccccc-----------------eeeeEEeccCceEEEeeCC-------------------
Confidence 9999999999999999999999877 5788899999999998852
Q ss_pred CCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeec--CCeEEEEEeCCeEEEE
Q 004581 310 EKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFS--HTSLLLVQYSCRLDIL 387 (744)
Q Consensus 310 ~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~~i~i~ 387 (744)
....+++|+.|+.|..-|+++.......-. ...++..+... .+...+.+.+..++-|
T Consensus 266 --------------sf~~vYsG~rd~~i~~Tdl~n~~~~tlick-------~daPv~~l~~~~~~~~~WvtTtds~I~rW 324 (735)
T KOG0308|consen 266 --------------SFTHVYSGGRDGNIYRTDLRNPAKSTLICK-------EDAPVLKLHLHEHDNSVWVTTTDSSIKRW 324 (735)
T ss_pred --------------CcceEEecCCCCcEEecccCCchhheEeec-------CCCchhhhhhccccCCceeeeccccceec
Confidence 223999999999999999987532211110 11223333333 2333566666677666
Q ss_pred EeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCccc
Q 004581 388 SVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKL 467 (744)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~ 467 (744)
..... .++++.|++...+++....+++... + .....++..
T Consensus 325 ~~~~~-------------------------------~~l~~s~~~~~~~T~~~~~~~~~~~---t------p~~vi~Gg~ 364 (735)
T KOG0308|consen 325 KLEPD-------------------------------IALSVSGDLDFFSTDSNNHSCDLTN---T------PDSVIPGGA 364 (735)
T ss_pred CCccc-------------------------------cccccCCCCCcccccCCCccccccC---C------CceeccCch
Confidence 54421 1455556555555554433333321 0 001111111
Q ss_pred ccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeec
Q 004581 468 QFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFT 506 (744)
Q Consensus 468 ~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 506 (744)
.+..-++-.|.+++++-...|.+.+||+-....+..|.
T Consensus 365 -ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g 402 (735)
T KOG0308|consen 365 -AIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG 402 (735)
T ss_pred -hhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence 34444556788999999999999999997666655554
No 67
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.2e-31 Score=235.97 Aligned_cols=293 Identities=17% Similarity=0.199 Sum_probs=234.6
Q ss_pred CccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEE
Q 004581 128 RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFW 206 (744)
Q Consensus 128 ~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vw 206 (744)
+....+.|..|||||++|++|+.||.|.+||..+|+....++-..+...--+...|.|+.|+.|. .+++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 45667899999999999999999999999999999877665533332223477899999999999 89999999999999
Q ss_pred eCCCcceEEEee-ccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCccee
Q 004581 207 DSRHGTLLQAHS-FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRA 285 (744)
Q Consensus 207 d~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 285 (744)
.+++|.+++.+. +|...|+|+.|+.|+..+++++.|.++++--+.++. ++..+++|+.-|+.
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK-----------------~LKEfrGHsSyvn~ 353 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK-----------------CLKEFRGHSSYVNE 353 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch-----------------hHHHhcCccccccc
Confidence 999999999987 899999999999999999999999999999999887 37889999999999
Q ss_pred eeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccc
Q 004581 286 LTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLV 365 (744)
Q Consensus 286 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v 365 (744)
..|. +||. .+++++.||+|++|+..+..-.......
T Consensus 354 a~ft---------~dG~------------------------~iisaSsDgtvkvW~~KtteC~~Tfk~~----------- 389 (508)
T KOG0275|consen 354 ATFT---------DDGH------------------------HIISASSDGTVKVWHGKTTECLSTFKPL----------- 389 (508)
T ss_pred eEEc---------CCCC------------------------eEEEecCCccEEEecCcchhhhhhccCC-----------
Confidence 9996 5554 9999999999999999875433222100
Q ss_pred cceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC--CEEEEEcCCceEE
Q 004581 366 HNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG--MLFAYSDHVKPSL 443 (744)
Q Consensus 366 ~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~la~~~~~~v~l 443 (744)
+....+.++-.-|.. .++++...+++.+
T Consensus 390 --------------------------------------------------~~d~~vnsv~~~PKnpeh~iVCNrsntv~i 419 (508)
T KOG0275|consen 390 --------------------------------------------------GTDYPVNSVILLPKNPEHFIVCNRSNTVYI 419 (508)
T ss_pred --------------------------------------------------CCcccceeEEEcCCCCceEEEEcCCCeEEE
Confidence 011334444444433 3444456777777
Q ss_pred EEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCce
Q 004581 444 FELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPI 523 (744)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i 523 (744)
.++.. ..+-...... ...+...+.+.||.|.++.+.++|+.++.|...+|++.+++.. |...+
T Consensus 420 mn~qG----QvVrsfsSGk--REgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V-----------hEkdv 482 (508)
T KOG0275|consen 420 MNMQG----QVVRSFSSGK--REGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV-----------HEKDV 482 (508)
T ss_pred Eeccc----eEEeeeccCC--ccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec-----------ccccc
Confidence 77653 1111111111 1122455677899999999999999999999999999999998 89999
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEE
Q 004581 524 TKMFTSSDGQWLAAVNCFGDVYIFN 548 (744)
Q Consensus 524 ~~l~~spdg~~las~~~dg~i~iwd 548 (744)
..++-+|..+.||+-+.||.+++|.
T Consensus 483 IGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 483 IGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccccCcccchhhhhcccchhhhcC
Confidence 9999999999999999999999994
No 68
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.5e-30 Score=236.87 Aligned_cols=192 Identities=16% Similarity=0.178 Sum_probs=162.1
Q ss_pred CCCCCCeeEEecCCCeEEEEEccC---CceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcC
Q 004581 1 MGLPGGRLFSSSIDGSVSEWDLYD---LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHET 77 (744)
Q Consensus 1 ~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (744)
+|..|.+||+++.|.+..+|++.. .+...++.+|..+|..+.||||.
T Consensus 232 FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd------------------------------ 281 (519)
T KOG0293|consen 232 FSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD------------------------------ 281 (519)
T ss_pred EcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCC------------------------------
Confidence 467899999999999999998864 34578999999999999999999
Q ss_pred ccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeeccc-CccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 004581 78 SESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLP-RVSGRVLSVTWSADGNMLYSGSSDGYIRS 156 (744)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~V~~~~~s~dg~~l~t~~~dg~i~v 156 (744)
++|++++.|..+++||+.+++.. +.+. +|...+.+++|.|||..+++|+.|++|..
T Consensus 282 --------------------ryLlaCg~~e~~~lwDv~tgd~~---~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~ 338 (519)
T KOG0293|consen 282 --------------------RYLLACGFDEVLSLWDVDTGDLR---HLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIM 338 (519)
T ss_pred --------------------CeEEecCchHheeeccCCcchhh---hhcccCcCCCcceeEEccCCceeEecCCCCcEEE
Confidence 67888888889999999988875 3332 45689999999999999999999999999
Q ss_pred EEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCE
Q 004581 157 WDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNR 235 (744)
Q Consensus 157 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 235 (744)
||+ .|........ .....|++++.++|| ++++.+.|..|++++.++...+..+.. ..+|++++.|.|+++
T Consensus 339 wdl-Dgn~~~~W~g-------vr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise-~~~its~~iS~d~k~ 409 (519)
T KOG0293|consen 339 WDL-DGNILGNWEG-------VRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISE-EQPITSFSISKDGKL 409 (519)
T ss_pred ecC-Ccchhhcccc-------cccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccc-cCceeEEEEcCCCcE
Confidence 998 4655555542 344779999999999 888888999999999987665544443 578999999999999
Q ss_pred EEeecCCCeEEEEEcccCc
Q 004581 236 VFSTGSDGQVILYKASCES 254 (744)
Q Consensus 236 l~~~~~dg~i~iw~~~~~~ 254 (744)
+++.-.+..+.+||+....
T Consensus 410 ~LvnL~~qei~LWDl~e~~ 428 (519)
T KOG0293|consen 410 ALVNLQDQEIHLWDLEENK 428 (519)
T ss_pred EEEEcccCeeEEeecchhh
Confidence 9998889999999988543
No 69
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=3.7e-29 Score=258.11 Aligned_cols=308 Identities=19% Similarity=0.281 Sum_probs=248.6
Q ss_pred CCceeEEEEEEecCC-eEEEEc--CCCCEEEEeCCC------------cceEEEeeccccceeEEEEcCCCCEEEeecCC
Q 004581 178 GPELCIWSLLSLRCG-TLVSAD--STGSVQFWDSRH------------GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD 242 (744)
Q Consensus 178 ~~~~~v~~~~~~~~~-~l~s~~--~dg~i~vwd~~~------------~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~d 242 (744)
.+...|.++..+||+ .+++|+ .|+.++||+.+. .+.+.+...|.+.|+|+.|+|||++||+|+.|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 455679999999999 899999 899999998752 34567778899999999999999999999999
Q ss_pred CeEEEEEcccCcCC-CCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccc
Q 004581 243 GQVILYKASCESIG-PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWA 321 (744)
Q Consensus 243 g~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 321 (744)
+.|.+|........ .....-......+|.....+++|..+|..++|+ |++.
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws---------p~~~------------------- 142 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS---------PDDS------------------- 142 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC---------CCcc-------------------
Confidence 99999998851111 111112234568899999999999999999998 6666
Q ss_pred cCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCC
Q 004581 322 HLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSS 401 (744)
Q Consensus 322 ~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~ 401 (744)
+|++++.|++|.+|+..++..
T Consensus 143 -----~lvS~s~DnsViiwn~~tF~~------------------------------------------------------ 163 (942)
T KOG0973|consen 143 -----LLVSVSLDNSVIIWNAKTFEL------------------------------------------------------ 163 (942)
T ss_pred -----EEEEecccceEEEEcccccee------------------------------------------------------
Confidence 999999999999999987531
Q ss_pred CCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCceEEEEeecCCCCCceEEeeec---cCC--cccccccEEEE
Q 004581 402 GGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKR---QLP--RKLQFAHSMIF 475 (744)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~---~~~--~~~~~v~~i~~ 475 (744)
.+....|...|-.+.|.|-|+|+|+ ++|+++++|+... |.+.+. .+. ........+.|
T Consensus 164 ---------~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d-------w~i~k~It~pf~~~~~~T~f~RlSW 227 (942)
T KOG0973|consen 164 ---------LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD-------WGIEKSITKPFEESPLTTFFLRLSW 227 (942)
T ss_pred ---------eeeeecccccccceEECCccCeeeeecCCceEEEEEccc-------ceeeEeeccchhhCCCcceeeeccc
Confidence 1222356688899999999999999 7999999999653 333321 111 11226788999
Q ss_pred eeCCCEEEEEeC----CCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCC-----CC------------E
Q 004581 476 SYDSSQLIIAGH----DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSD-----GQ------------W 534 (744)
Q Consensus 476 spd~~~l~~~~~----dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-----g~------------~ 534 (744)
||||++|++... -..+.|.+-.+.+.-..|-+ |.+++.++.|+|. .+ .
T Consensus 228 SPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG-----------H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i 296 (942)
T KOG0973|consen 228 SPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG-----------HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCI 296 (942)
T ss_pred CCCcCeecchhhccCCcceeEEEecCCceeeeeeec-----------CCCceEEEEeChHHhccccccCCccCCCcceEE
Confidence 999999998743 23788998888888888888 9999999999981 11 6
Q ss_pred EEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCcccc
Q 004581 535 LAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGE 600 (744)
Q Consensus 535 las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ 600 (744)
+|+|+.|+.|.||.....++...+.......|..|+|+| ||..|++++.||+|.++.++.+++..
T Consensus 297 ~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~ElG~ 361 (942)
T KOG0973|consen 297 AAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKELGV 361 (942)
T ss_pred EEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcC-CCCeEEEEecCCeEEEEEcchHHhCc
Confidence 789999999999999988887777666668999999999 99999999999999999998776543
No 70
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.2e-30 Score=231.30 Aligned_cols=273 Identities=17% Similarity=0.228 Sum_probs=216.2
Q ss_pred CeEEEEecCCeEEEEEecCCCce---e--EeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecC
Q 004581 98 RRVALACDDGCVRIYRITDSDEL---I--YHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGL 172 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~~~---~--~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~ 172 (744)
++|++|+.||.|.+||..+|+.- . ..-.|.-|..+|.|++||.|..+||+|+.||.|+||.+++|.+++++..
T Consensus 226 qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdr-- 303 (508)
T KOG0275|consen 226 QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDR-- 303 (508)
T ss_pred ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhh--
Confidence 69999999999999999876532 1 1123446788999999999999999999999999999999999999974
Q ss_pred CCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcc
Q 004581 173 GGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKAS 251 (744)
Q Consensus 173 ~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~ 251 (744)
.|...|+|+.|+.|+ .+++++.|.++++--+++|+++..+++|..-|+...|.+||.++++++.||+|++|+..
T Consensus 304 -----AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~K 378 (508)
T KOG0275|consen 304 -----AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGK 378 (508)
T ss_pred -----hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCc
Confidence 699999999999999 99999999999999999999999999999999999999999999999999999999998
Q ss_pred cCcCCCCCCCCcccccceEEEEeeeee--ccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEE
Q 004581 252 CESIGPNDGLSSSEVIKKWIYVGSVRA--HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLI 329 (744)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~ 329 (744)
+..+ +.++.. ....|.++-.- | .+.+.++
T Consensus 379 tteC-----------------~~Tfk~~~~d~~vnsv~~~---------P-----------------------Knpeh~i 409 (508)
T KOG0275|consen 379 TTEC-----------------LSTFKPLGTDYPVNSVILL---------P-----------------------KNPEHFI 409 (508)
T ss_pred chhh-----------------hhhccCCCCcccceeEEEc---------C-----------------------CCCceEE
Confidence 8763 333322 23344454432 1 1234788
Q ss_pred EecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcce
Q 004581 330 SAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSL 409 (744)
Q Consensus 330 s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 409 (744)
.+....++++.++... .+.+ +..+.
T Consensus 410 VCNrsntv~imn~qGQ------------------vVrs---------------------fsSGk---------------- 434 (508)
T KOG0275|consen 410 VCNRSNTVYIMNMQGQ------------------VVRS---------------------FSSGK---------------- 434 (508)
T ss_pred EEcCCCeEEEEeccce------------------EEee---------------------eccCC----------------
Confidence 8888888887766430 0000 00000
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCC
Q 004581 410 LVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD 488 (744)
Q Consensus 410 ~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~d 488 (744)
...+...++++||.|.++.+ +.|+.++.|....+ +.. ..++-|...+..++-+|..+.||+-++|
T Consensus 435 ------REgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG--~LE------~tl~VhEkdvIGl~HHPHqNllAsYsED 500 (508)
T KOG0275|consen 435 ------REGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG--KLE------RTLPVHEKDVIGLTHHPHQNLLASYSED 500 (508)
T ss_pred ------ccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC--cee------eeeecccccccccccCcccchhhhhccc
Confidence 11245667789999999887 79999999998762 222 3455566678888999999999999999
Q ss_pred CcEEEEE
Q 004581 489 RRIYVVD 495 (744)
Q Consensus 489 g~i~v~d 495 (744)
|.+++|.
T Consensus 501 gllKLWk 507 (508)
T KOG0275|consen 501 GLLKLWK 507 (508)
T ss_pred chhhhcC
Confidence 9999995
No 71
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=5.8e-29 Score=225.83 Aligned_cols=297 Identities=19% Similarity=0.195 Sum_probs=237.3
Q ss_pred CccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC----eEEEEcCCCCE
Q 004581 128 RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG----TLVSADSTGSV 203 (744)
Q Consensus 128 ~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~l~s~~~dg~i 203 (744)
.|...|.++.-. +++++||+.||.+++||. .|+.+..+. +|.++|.++++...+ .+++++.|.++
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~--------Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl 171 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIV--------GHTGPIKSVAWVIKNSSSCLFVSASMDQTL 171 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEe--------cCCcceeeeEEEecCCccceEEEecCCceE
Confidence 488899998887 789999999999999996 688888888 799999988776433 59999999999
Q ss_pred EEEeCCCcce----EEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCc--------ccccceEE
Q 004581 204 QFWDSRHGTL----LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSS--------SEVIKKWI 271 (744)
Q Consensus 204 ~vwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--------~~~~~~~~ 271 (744)
++|.++.+.. +...++|.+.|.++...++|.++++|+.|.+|.+|+.........+.... ......-.
T Consensus 172 ~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~ 251 (423)
T KOG0313|consen 172 RLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT 251 (423)
T ss_pred EEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence 9999887654 34456999999999999999999999999999999943332211111111 11112233
Q ss_pred EEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCc
Q 004581 272 YVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPH 351 (744)
Q Consensus 272 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~ 351 (744)
++..+.+|..+|.++.|+ +. ..+++++.|.+|+.||+.+.....
T Consensus 252 P~vtl~GHt~~Vs~V~w~----------d~------------------------~v~yS~SwDHTIk~WDletg~~~~-- 295 (423)
T KOG0313|consen 252 PLVTLEGHTEPVSSVVWS----------DA------------------------TVIYSVSWDHTIKVWDLETGGLKS-- 295 (423)
T ss_pred ceEEecccccceeeEEEc----------CC------------------------CceEeecccceEEEEEeeccccee--
Confidence 467789999999999995 22 389999999999999998643211
Q ss_pred ccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCC
Q 004581 352 EICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGM 431 (744)
Q Consensus 352 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 431 (744)
++ .....+.|+..+|..+
T Consensus 296 ------------------------------------------------------------~~--~~~ksl~~i~~~~~~~ 313 (423)
T KOG0313|consen 296 ------------------------------------------------------------TL--TTNKSLNCISYSPLSK 313 (423)
T ss_pred ------------------------------------------------------------ee--ecCcceeEeecccccc
Confidence 11 1126688999999999
Q ss_pred EEEEE-cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCC-EEEEEeCCCcEEEEEccCCc-eeeeeccC
Q 004581 432 LFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSS-QLIIAGHDRRIYVVDVSSSE-LLHTFTPC 508 (744)
Q Consensus 432 ~la~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~-~l~~~~~dg~i~v~d~~~~~-~~~~~~~~ 508 (744)
+|++| ++..+++||.+.+++... ...+.+|...|.++.|+|... .|++++.|+++++||+.+.+ ++..+.+
T Consensus 314 Ll~~gssdr~irl~DPR~~~gs~v-----~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~- 387 (423)
T KOG0313|consen 314 LLASGSSDRHIRLWDPRTGDGSVV-----SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG- 387 (423)
T ss_pred eeeecCCCCceeecCCCCCCCcee-----EEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc-
Confidence 99994 999999999998544433 377899999999999999665 57888999999999998776 8999998
Q ss_pred cccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC
Q 004581 509 REEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE 550 (744)
Q Consensus 509 ~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~ 550 (744)
|...|.++.|+. +.++++|+.|.+|+|+.-.
T Consensus 388 ----------h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 388 ----------HNDKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ----------CCceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 999999999964 5689999999999998643
No 72
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=5.5e-30 Score=218.97 Aligned_cols=291 Identities=15% Similarity=0.177 Sum_probs=240.5
Q ss_pred EEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCCe
Q 004581 29 IVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGC 108 (744)
Q Consensus 29 ~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~ 108 (744)
.+..+|..+|-.++|||-- ++|-+|+++|.|+.
T Consensus 8 l~c~ghtrpvvdl~~s~it-----------------------------------------------p~g~flisa~kd~~ 40 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPIT-----------------------------------------------PDGYFLISASKDGK 40 (334)
T ss_pred eEEcCCCcceeEEeccCCC-----------------------------------------------CCceEEEEeccCCC
Confidence 4567899999999999643 22258999999999
Q ss_pred EEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEE
Q 004581 109 VRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLS 188 (744)
Q Consensus 109 i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 188 (744)
-.+-+-+++.-+ -+|.+|.+.|.+.+.+.+....|+++.|=+.+|||.-+|..++.+. |...|.+++|
T Consensus 41 pmlr~g~tgdwi---gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~---------hkhivk~~af 108 (334)
T KOG0278|consen 41 PMLRNGDTGDWI---GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE---------HKHIVKAVAF 108 (334)
T ss_pred chhccCCCCCcE---EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh---------hhheeeeEEe
Confidence 888877777776 8999999999999999999999999999999999999999999986 8999999999
Q ss_pred ecCC-eEEEEcCCCCEEEEeCCC-cceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccc
Q 004581 189 LRCG-TLVSADSTGSVQFWDSRH-GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEV 266 (744)
Q Consensus 189 ~~~~-~l~s~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 266 (744)
+.|. +|++|+.+..++|+|++. ..+...+.+|.+.|..+.|....+.|++++.|++||+||.+++..
T Consensus 109 ~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~----------- 177 (334)
T KOG0278|consen 109 SQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE----------- 177 (334)
T ss_pred cccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE-----------
Confidence 9999 999999999999999986 346678999999999999999999999999999999999999872
Q ss_pred cceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccC
Q 004581 267 IKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT 346 (744)
Q Consensus 267 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~ 346 (744)
+.. ....+.|.++.++ ++|. +++-...+.|.+||...+.
T Consensus 178 ------v~s-L~~~s~VtSlEvs---------~dG~-------------------------ilTia~gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 178 ------VQS-LEFNSPVTSLEVS---------QDGR-------------------------ILTIAYGSSVKFWDAKSFG 216 (334)
T ss_pred ------EEE-EecCCCCcceeec---------cCCC-------------------------EEEEecCceeEEecccccc
Confidence 333 3455678888887 6663 6666667889999998765
Q ss_pred CCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEE
Q 004581 347 KFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTI 426 (744)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 426 (744)
.+.... . ..+|.+.++
T Consensus 217 ~lKs~k--------------------------------------------------------------~--P~nV~SASL 232 (334)
T KOG0278|consen 217 LLKSYK--------------------------------------------------------------M--PCNVESASL 232 (334)
T ss_pred ceeecc--------------------------------------------------------------C--ccccccccc
Confidence 443221 1 156778889
Q ss_pred cCCCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCce
Q 004581 427 SNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSEL 501 (744)
Q Consensus 427 s~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~ 501 (744)
+|+...+++ +.+..++.||..++ ..+ . .-..+|..+|.|+.|+|||...|+|++||+|++|....++.
T Consensus 233 ~P~k~~fVaGged~~~~kfDy~Tg---eEi---~-~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 233 HPKKEFFVAGGEDFKVYKFDYNTG---EEI---G-SYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred cCCCceEEecCcceEEEEEeccCC---cee---e-ecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 998877766 58889999998872 222 0 11467888999999999999999999999999999865543
No 73
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.6e-28 Score=222.92 Aligned_cols=245 Identities=18% Similarity=0.178 Sum_probs=198.0
Q ss_pred CCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCC
Q 004581 5 GGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS 84 (744)
Q Consensus 5 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (744)
.+++++|+.||++++||. .|+...++.+|.++|.++++.-....-
T Consensus 115 ~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~---------------------------------- 159 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSS---------------------------------- 159 (423)
T ss_pred CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCcc----------------------------------
Confidence 567999999999999995 779999999999999988775433110
Q ss_pred CcccccccccccCCeEEEEecCCeEEEEEecCCCce-eEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCc
Q 004581 85 DSDELHEQSVVEDRRVALACDDGCVRIYRITDSDEL-IYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY 163 (744)
Q Consensus 85 ~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~ 163 (744)
..+++++.|.++++|.++.++.. ...+...||+..|.+++..++|..+++|+.|.+|.||+.++..
T Consensus 160 -------------~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~ 226 (423)
T KOG0313|consen 160 -------------CLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDE 226 (423)
T ss_pred -------------ceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCc
Confidence 37999999999999999855432 2234555999999999999999999999999999999932210
Q ss_pred --eEEEEEe---------c------CCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeE
Q 004581 164 --EIYRITV---------G------LGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNA 226 (744)
Q Consensus 164 --~~~~~~~---------~------~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 226 (744)
....... . +-....+|..+|.++.|++.+.+++++.|.+|+.||+.++..+.++.+ ...++|
T Consensus 227 ~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~ 305 (423)
T KOG0313|consen 227 EDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNC 305 (423)
T ss_pred cccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-CcceeE
Confidence 0000000 0 000123899999999999988999999999999999999999988886 678999
Q ss_pred EEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCccccccc
Q 004581 227 LAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRS 306 (744)
Q Consensus 227 l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~ 306 (744)
+.++|..++|++|+.|..+++||.+.+.- -....++.+|.+-|.++.++ |..
T Consensus 306 i~~~~~~~Ll~~gssdr~irl~DPR~~~g--------------s~v~~s~~gH~nwVssvkws---------p~~----- 357 (423)
T KOG0313|consen 306 ISYSPLSKLLASGSSDRHIRLWDPRTGDG--------------SVVSQSLIGHKNWVSSVKWS---------PTN----- 357 (423)
T ss_pred eecccccceeeecCCCCceeecCCCCCCC--------------ceeEEeeecchhhhhheecC---------CCC-----
Confidence 99999999999999999999999988752 12356788999999999987 333
Q ss_pred CCCCCCccccccccccCCCcEEEEecCCCeEEEEecCc
Q 004581 307 RGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 344 (744)
Q Consensus 307 ~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~ 344 (744)
...|++++.|+++++||.+.
T Consensus 358 ------------------~~~~~S~S~D~t~klWDvRS 377 (423)
T KOG0313|consen 358 ------------------EFQLVSGSYDNTVKLWDVRS 377 (423)
T ss_pred ------------------ceEEEEEecCCeEEEEEecc
Confidence 24899999999999999986
No 74
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=2.8e-28 Score=249.67 Aligned_cols=285 Identities=20% Similarity=0.249 Sum_probs=235.2
Q ss_pred CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCC
Q 004581 98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS 177 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 177 (744)
.++++++.|++|++||..++..+. ..+.+|.+.|.+++|..-+..|++|+.|.++++||..+|++.+.+.
T Consensus 219 ~~~~~~s~~~tl~~~~~~~~~~i~--~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~-------- 288 (537)
T KOG0274|consen 219 GFFKSGSDDSTLHLWDLNNGYLIL--TRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQ-------- 288 (537)
T ss_pred CeEEecCCCceeEEeecccceEEE--eeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEec--------
Confidence 389999999999999998666652 4499999999999998878999999999999999999999999998
Q ss_pred CCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCC
Q 004581 178 GPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGP 257 (744)
Q Consensus 178 ~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 257 (744)
+|...|.++...+. .+++|+.|.+|++|+++++.++..+.+|.++|.++..+ +.++++|+.|++|++|+..+.+
T Consensus 289 gh~stv~~~~~~~~-~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~--- 362 (537)
T KOG0274|consen 289 GHTSSVRCLTIDPF-LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGK--- 362 (537)
T ss_pred CCCceEEEEEccCc-eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhce---
Confidence 79999998876532 78889999999999999999999999999999999998 7899999999999999999776
Q ss_pred CCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeE
Q 004581 258 NDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKL 337 (744)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i 337 (744)
++..+.+|+..|+++.+. +. +.+++|+.|++|
T Consensus 363 --------------cl~sl~gH~~~V~sl~~~---------~~-------------------------~~~~Sgs~D~~I 394 (537)
T KOG0274|consen 363 --------------CLKSLSGHTGRVYSLIVD---------SE-------------------------NRLLSGSLDTTI 394 (537)
T ss_pred --------------eeeeecCCcceEEEEEec---------Cc-------------------------ceEEeeeeccce
Confidence 589999999999999873 11 389999999999
Q ss_pred EEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecC
Q 004581 338 FAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKA 417 (744)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (744)
++||+.+... ++
T Consensus 395 kvWdl~~~~~-------------------------------------------------------------c~------- 406 (537)
T KOG0274|consen 395 KVWDLRTKRK-------------------------------------------------------------CI------- 406 (537)
T ss_pred EeecCCchhh-------------------------------------------------------------hh-------
Confidence 9999986310 00
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEcc
Q 004581 418 SRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS 497 (744)
Q Consensus 418 ~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~ 497 (744)
..+.+|..-+..+. ..+++|++++.|++|++||..
T Consensus 407 -------------------------------------------~tl~~h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~ 441 (537)
T KOG0274|consen 407 -------------------------------------------HTLQGHTSLVSSLL--LRDNFLVSSSADGTIKLWDAE 441 (537)
T ss_pred -------------------------------------------hhhcCCcccccccc--cccceeEeccccccEEEeecc
Confidence 11122222222333 367899999999999999999
Q ss_pred CCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEee
Q 004581 498 SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGF 571 (744)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~ 571 (744)
++++++++.+. |...|+.+++. ...+++++.||.+++||+.+++....+..........+++
T Consensus 442 ~~~~~~~~~~~----------~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~~~~~~~~~~~~ 503 (537)
T KOG0274|consen 442 EGECLRTLEGR----------HVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLSTDLGATWGVAP 503 (537)
T ss_pred cCceeeeeccC----------CcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhhhhccccccccccc
Confidence 99999999973 46889988876 4578888999999999999998876653333333444444
No 75
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.2e-28 Score=213.17 Aligned_cols=294 Identities=14% Similarity=0.170 Sum_probs=225.7
Q ss_pred cccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCE
Q 004581 125 SLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSV 203 (744)
Q Consensus 125 ~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i 203 (744)
.+.||+.+++.+.|+.+|.+|++|+.|.++.||-..+|+.+.++. +|.+.||++....+. .+++|+.|.++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~--------GHtGavW~~Did~~s~~liTGSAD~t~ 76 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYD--------GHTGAVWCCDIDWDSKHLITGSADQTA 76 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeec--------CCCceEEEEEecCCcceeeecccccee
Confidence 467999999999999999999999999999999999999999998 899999999999888 89999999999
Q ss_pred EEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeec-----CCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeee
Q 004581 204 QFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTG-----SDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA 278 (744)
Q Consensus 204 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (744)
++||.++|+++.+++. ..+|..+.|+++|++++... ..+.|.++|++...... ..-.+...+..
T Consensus 77 kLWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~----------~s~ep~~kI~t 145 (327)
T KOG0643|consen 77 KLWDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDI----------DSEEPYLKIPT 145 (327)
T ss_pred EEEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhh----------cccCceEEecC
Confidence 9999999999999986 67999999999999887764 35779999988543100 00112344455
Q ss_pred ccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCC
Q 004581 279 HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQ 358 (744)
Q Consensus 279 h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~ 358 (744)
+...++..-|. |-+ +.|++|..||.|..||+++...+
T Consensus 146 ~~skit~a~Wg---------~l~------------------------~~ii~Ghe~G~is~~da~~g~~~---------- 182 (327)
T KOG0643|consen 146 PDSKITSALWG---------PLG------------------------ETIIAGHEDGSISIYDARTGKEL---------- 182 (327)
T ss_pred Cccceeeeeec---------ccC------------------------CEEEEecCCCcEEEEEcccCcee----------
Confidence 56666666664 333 49999999999999999864321
Q ss_pred CCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-Ec
Q 004581 359 RVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SD 437 (744)
Q Consensus 359 ~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~ 437 (744)
..-...|...|..+.+++|..++++ +.
T Consensus 183 ----------------------------------------------------v~s~~~h~~~Ind~q~s~d~T~FiT~s~ 210 (327)
T KOG0643|consen 183 ----------------------------------------------------VDSDEEHSSKINDLQFSRDRTYFITGSK 210 (327)
T ss_pred ----------------------------------------------------eechhhhccccccccccCCcceEEeccc
Confidence 1112234568899999999999988 48
Q ss_pred CCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCc--EEEEEccCC------------ceee
Q 004581 438 HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRR--IYVVDVSSS------------ELLH 503 (744)
Q Consensus 438 ~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~--i~v~d~~~~------------~~~~ 503 (744)
|.+.++|++.. ..+ +++ .....++++.+++|-..+++.|+.... |.--+...| +.+.
T Consensus 211 Dttakl~D~~t----l~v--~Kt---y~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEig 281 (327)
T KOG0643|consen 211 DTTAKLVDVRT----LEV--LKT---YTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIG 281 (327)
T ss_pred Cccceeeeccc----eee--EEE---eeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhc
Confidence 88889998865 111 111 122338999999998888887764322 211111222 2334
Q ss_pred eeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCc
Q 004581 504 TFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ 552 (744)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~ 552 (744)
.+++ |-++|++++|+|+|+..++|+.||.|++...+..
T Consensus 282 rvkG-----------HFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 282 RVKG-----------HFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred cccc-----------cccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 4444 9999999999999999999999999999866543
No 76
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=4.2e-28 Score=209.11 Aligned_cols=278 Identities=19% Similarity=0.215 Sum_probs=226.8
Q ss_pred EEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCCe
Q 004581 29 IVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGC 108 (744)
Q Consensus 29 ~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~ 108 (744)
+.+++|...|.+|+|+.+| ..||+|+.|++
T Consensus 14 r~~~~~~~~v~Sv~wn~~g--------------------------------------------------~~lasgs~dkt 43 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDG--------------------------------------------------TKLASGSFDKT 43 (313)
T ss_pred HHhhhhhhcceEEEEcccC--------------------------------------------------ceeeecccCCc
Confidence 5577899999999999999 69999999999
Q ss_pred EEEEEecCCCceeEeecccCccCcEEEEEEec-CCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEE
Q 004581 109 VRIYRITDSDELIYHRSLPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLL 187 (744)
Q Consensus 109 i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~-dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 187 (744)
+.+|++... .+.......+|.+.|-.++|+| ....|++++.|.+|++||++++++...+.. ...-.-+.
T Consensus 44 v~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~---------~~eni~i~ 113 (313)
T KOG1407|consen 44 VSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIET---------KGENINIT 113 (313)
T ss_pred eEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeec---------cCcceEEE
Confidence 999999844 4444456779999999999987 456899999999999999999999999873 23334467
Q ss_pred EecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccc
Q 004581 188 SLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEV 266 (744)
Q Consensus 188 ~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 266 (744)
|+|+| +++.++.|..|.+.|.++.+.+...+. .-.+..++|+.++++++.....|.|.|.....-+
T Consensus 114 wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk------------ 180 (313)
T KOG1407|consen 114 WSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK------------ 180 (313)
T ss_pred EcCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEecCCceEEEEeccccc------------
Confidence 89988 999999999999999998887766654 5678889999888888888788999998887544
Q ss_pred cceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccC
Q 004581 267 IKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT 346 (744)
Q Consensus 267 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~ 346 (744)
++..+..|.....|+.|+ |+|+ ++++|+.|..+.+||+.+.-
T Consensus 181 -----pv~si~AH~snCicI~f~---------p~Gr------------------------yfA~GsADAlvSLWD~~ELi 222 (313)
T KOG1407|consen 181 -----PVQSIKAHPSNCICIEFD---------PDGR------------------------YFATGSADALVSLWDVDELI 222 (313)
T ss_pred -----cccccccCCcceEEEEEC---------CCCc------------------------eEeeccccceeeccChhHhh
Confidence 366777787777777776 6666 78888888888888776421
Q ss_pred CCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEE
Q 004581 347 KFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTI 426 (744)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 426 (744)
T Consensus 223 -------------------------------------------------------------------------------- 222 (313)
T KOG1407|consen 223 -------------------------------------------------------------------------------- 222 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeec
Q 004581 427 SNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFT 506 (744)
Q Consensus 427 s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 506 (744)
++ ..+..+.-+|+.+.||.||++||+|++|..|-|=++++|..+..++
T Consensus 223 ---------------------------C~-----R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~ 270 (313)
T KOG1407|consen 223 ---------------------------CE-----RCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP 270 (313)
T ss_pred ---------------------------hh-----eeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee
Confidence 10 1122222378899999999999999999999999999999999988
Q ss_pred cCcccccccCCCCCCceEEEEECCCCCEEEEEeCC
Q 004581 507 PCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF 541 (744)
Q Consensus 507 ~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~d 541 (744)
+.++...++|+|...+||.+..|
T Consensus 271 ------------~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 271 ------------CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ------------ccCCceeEEecCCCceeeEEecC
Confidence 58999999999999999988765
No 77
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.8e-28 Score=230.31 Aligned_cols=283 Identities=18% Similarity=0.187 Sum_probs=233.8
Q ss_pred ccCcEEEEEEecCCCE-EEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEE
Q 004581 129 VSGRVLSVTWSADGNM-LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFW 206 (744)
Q Consensus 129 h~~~V~~~~~s~dg~~-l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vw 206 (744)
....|.+++|||...+ +|+.+. -.+.+|+..+......+. .....|+++.|..|| ++++|+..|.|+++
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~s--------rFk~~v~s~~fR~DG~LlaaGD~sG~V~vf 95 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFS--------RFKDVVYSVDFRSDGRLLAAGDESGHVKVF 95 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHH--------hhccceeEEEeecCCeEEEccCCcCcEEEe
Confidence 3468999999995542 444443 379999988877766665 577889999999999 88899999999999
Q ss_pred eCCCcceEEEeeccccceeEEEEcCCC-CEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCccee
Q 004581 207 DSRHGTLLQAHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRA 285 (744)
Q Consensus 207 d~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 285 (744)
|+.+...+..+.+|+.+|..+.|+|++ ..+++|+.|+.+++||+.+.. ....+.+|++.|++
T Consensus 96 D~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-----------------v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 96 DMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-----------------VQAELSGHTDYVRC 158 (487)
T ss_pred ccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-----------------EEEEecCCcceeEe
Confidence 988777888999999999999999965 556678889999999998865 24578999999999
Q ss_pred eeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccc
Q 004581 286 LTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLV 365 (744)
Q Consensus 286 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v 365 (744)
.++++ . +...++|||.||.|++||++...
T Consensus 159 g~~~~---------~-----------------------~~hivvtGsYDg~vrl~DtR~~~------------------- 187 (487)
T KOG0310|consen 159 GDISP---------A-----------------------NDHIVVTGSYDGKVRLWDTRSLT------------------- 187 (487)
T ss_pred ecccc---------C-----------------------CCeEEEecCCCceEEEEEeccCC-------------------
Confidence 99962 1 22389999999999999998632
Q ss_pred cceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEE
Q 004581 366 HNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFE 445 (744)
Q Consensus 366 ~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~ 445 (744)
-......|..+|..+.+-|.|..+|++....+++||
T Consensus 188 --------------------------------------------~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWD 223 (487)
T KOG0310|consen 188 --------------------------------------------SRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWD 223 (487)
T ss_pred --------------------------------------------ceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEE
Confidence 011234466889999999999999999999999999
Q ss_pred eecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEE
Q 004581 446 LKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITK 525 (744)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 525 (744)
+.. ++..+ .....|...|+|+++..++..|++++-|+.|++||+.+.+.+..+. ..++|.+
T Consensus 224 l~~--G~qll-----~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~------------~~~pvLs 284 (487)
T KOG0310|consen 224 LTT--GGQLL-----TSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK------------YPGPVLS 284 (487)
T ss_pred ecC--Cceeh-----hhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee------------cccceee
Confidence 986 22222 3344588899999999999999999999999999999999999998 5899999
Q ss_pred EEECCCCCEEEEEeCCCcEEEEECCC
Q 004581 526 MFTSSDGQWLAAVNCFGDVYIFNLEI 551 (744)
Q Consensus 526 l~~spdg~~las~~~dg~i~iwd~~~ 551 (744)
++.|||++.++.|-.||.+.+-+...
T Consensus 285 iavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 285 IAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred EEecCCCceEEEecccceeeeehhhc
Confidence 99999999999999999887764443
No 78
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.3e-29 Score=232.47 Aligned_cols=285 Identities=18% Similarity=0.179 Sum_probs=226.6
Q ss_pred ecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCc--eEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCC
Q 004581 124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY--EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADST 200 (744)
Q Consensus 124 ~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~d 200 (744)
..+..|.+.|..+.|-++...|++|+.|..|++|++..++ .+..+. +..+.|.++.|.+++ .+++++.|
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa--------Gs~g~it~~d~d~~~~~~iAas~d 240 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLA--------GSLGNITSIDFDSDNKHVIAASND 240 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhh--------ccCCCcceeeecCCCceEEeecCC
Confidence 6778899999999999999999999999999999987665 344444 677889999999999 89999999
Q ss_pred CCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeecc
Q 004581 201 GSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHT 280 (744)
Q Consensus 201 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 280 (744)
+.+++|++...+...++.+|...|+++.|......+++|+.|.+|++||+..... ..+. ...
T Consensus 241 ~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C-----------------~kt~-l~~ 302 (459)
T KOG0288|consen 241 KNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC-----------------SKTV-LPG 302 (459)
T ss_pred Cceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhe-----------------eccc-ccc
Confidence 9999999999999999999999999999998777799999999999999988552 2221 122
Q ss_pred CcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCC
Q 004581 281 HDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRV 360 (744)
Q Consensus 281 ~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~ 360 (744)
..+..++.. ...+++|..|++|++||.+...
T Consensus 303 S~cnDI~~~-----------------------------------~~~~~SgH~DkkvRfwD~Rs~~-------------- 333 (459)
T KOG0288|consen 303 SQCNDIVCS-----------------------------------ISDVISGHFDKKVRFWDIRSAD-------------- 333 (459)
T ss_pred ccccceEec-----------------------------------ceeeeecccccceEEEeccCCc--------------
Confidence 223333331 1278899999999999987532
Q ss_pred ccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCC
Q 004581 361 PIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHV 439 (744)
Q Consensus 361 ~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~ 439 (744)
+...+.. .+.|+++..+++|..|.+ +.|.
T Consensus 334 ------------------------------------------------~~~sv~~--gg~vtSl~ls~~g~~lLsssRDd 363 (459)
T KOG0288|consen 334 ------------------------------------------------KTRSVPL--GGRVTSLDLSMDGLELLSSSRDD 363 (459)
T ss_pred ------------------------------------------------eeeEeec--CcceeeEeeccCCeEEeeecCCC
Confidence 1222222 258999999999966555 6899
Q ss_pred ceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCC
Q 004581 440 KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPS 519 (744)
Q Consensus 440 ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 519 (744)
.+.++++... .....+.... .......+.+.|||++.|+++|+.||.|+||++.++++...+... +
T Consensus 364 tl~viDlRt~-eI~~~~sA~g---~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s----------~ 429 (459)
T KOG0288|consen 364 TLKVIDLRTK-EIRQTFSAEG---FKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLS----------T 429 (459)
T ss_pred ceeeeecccc-cEEEEeeccc---cccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccC----------C
Confidence 9999998761 1112211111 111225889999999999999999999999999999999888873 2
Q ss_pred CC-ceEEEEECCCCCEEEEEeCCCcEEEE
Q 004581 520 EP-PITKMFTSSDGQWLAAVNCFGDVYIF 547 (744)
Q Consensus 520 ~~-~i~~l~~spdg~~las~~~dg~i~iw 547 (744)
.. .|++++|+|.|.+|++++.++.+.+|
T Consensus 430 s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 430 SNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCcceEEEEEcCCCchhhcccCCcceEec
Confidence 22 69999999999999999999999998
No 79
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=2.8e-28 Score=249.64 Aligned_cols=226 Identities=23% Similarity=0.316 Sum_probs=204.0
Q ss_pred CCCeeEEecCCCeEEEEEccCCceeEE-eeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCC
Q 004581 4 PGGRLFSSSIDGSVSEWDLYDLKQKIV-LQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEN 82 (744)
Q Consensus 4 ~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (744)
.++++++++.+++|.+||..++..+.. +.+|.+.|++++|..-+
T Consensus 217 ~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~----------------------------------- 261 (537)
T KOG0274|consen 217 HDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGG----------------------------------- 261 (537)
T ss_pred ecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCC-----------------------------------
Confidence 367899999999999999999999998 99999999999998733
Q ss_pred CCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 004581 83 DSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG 162 (744)
Q Consensus 83 ~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~ 162 (744)
.+|++|+.|.++++||..++++. ..+.+|.+.|.++... +..+++|+.|.+|++|+++++
T Consensus 262 ---------------~~lvsgS~D~t~rvWd~~sg~C~---~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~ 321 (537)
T KOG0274|consen 262 ---------------DKLVSGSTDKTERVWDCSTGECT---HSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNG 321 (537)
T ss_pred ---------------CEEEEEecCCcEEeEecCCCcEE---EEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCc
Confidence 58999999999999999989888 8999999999998874 567888999999999999999
Q ss_pred ceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCC
Q 004581 163 YEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD 242 (744)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~d 242 (744)
..+..+. +|..+|.++... .+.+++|+.|++|++||+.+++++.++++|...|.++.+... +.+++|+.|
T Consensus 322 ~~l~l~~--------~h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D 391 (537)
T KOG0274|consen 322 ACLNLLR--------GHTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLD 391 (537)
T ss_pred ceEEEec--------cccccEEEEEec-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeec
Confidence 9999997 699999999998 559999999999999999999999999999999999988765 789999999
Q ss_pred CeEEEEEcccC-cCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccc
Q 004581 243 GQVILYKASCE-SIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWA 321 (744)
Q Consensus 243 g~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 321 (744)
++|++||+.+. + ++..+.+|..-+..+.+.
T Consensus 392 ~~IkvWdl~~~~~-----------------c~~tl~~h~~~v~~l~~~-------------------------------- 422 (537)
T KOG0274|consen 392 TTIKVWDLRTKRK-----------------CIHTLQGHTSLVSSLLLR-------------------------------- 422 (537)
T ss_pred cceEeecCCchhh-----------------hhhhhcCCcccccccccc--------------------------------
Confidence 99999999987 4 477888999888777652
Q ss_pred cCCCcEEEEecCCCeEEEEecCccC
Q 004581 322 HLGVPMLISAGDDTKLFAYCANEFT 346 (744)
Q Consensus 322 ~~~~~~l~s~~~d~~i~~~~~~~~~ 346 (744)
...|++++.|+.|++||..+..
T Consensus 423 ---~~~Lvs~~aD~~Ik~WD~~~~~ 444 (537)
T KOG0274|consen 423 ---DNFLVSSSADGTIKLWDAEEGE 444 (537)
T ss_pred ---cceeEeccccccEEEeecccCc
Confidence 2389999999999999987644
No 80
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.8e-28 Score=215.71 Aligned_cols=315 Identities=19% Similarity=0.267 Sum_probs=247.7
Q ss_pred eeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCc
Q 004581 7 RLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDS 86 (744)
Q Consensus 7 ~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (744)
++++.-.++++. .++.+.|.||...||.++.....
T Consensus 126 rivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tq--------------------------------------- 160 (481)
T KOG0300|consen 126 RIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQ--------------------------------------- 160 (481)
T ss_pred hheeeecCCcee------EeehhhhcccccceeeehhhcCC---------------------------------------
Confidence 445555555422 24566789999999999987765
Q ss_pred ccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEc------c
Q 004581 87 DELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDA------K 160 (744)
Q Consensus 87 ~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~------~ 160 (744)
..+.+++.|.+-+||.++++.++ ..+.||.+.|+++.|++.+.++++++.|++..||.. .
T Consensus 161 -----------pi~gtASADhTA~iWs~Esg~CL---~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP 226 (481)
T KOG0300|consen 161 -----------PICGTASADHTARIWSLESGACL---ATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVP 226 (481)
T ss_pred -----------cceeecccccceeEEeeccccce---eeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCC
Confidence 58899999999999999999998 889999999999999999999999999999999962 1
Q ss_pred C--------Cce-------------------EEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcc
Q 004581 161 L--------GYE-------------------IYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGT 212 (744)
Q Consensus 161 ~--------~~~-------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~ 212 (744)
. ++. -.+++.+... ..+|...|.+..|...| ++++++.|.+..+||+++|.
T Consensus 227 ~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~-ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge 305 (481)
T KOG0300|consen 227 SNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMR-LTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE 305 (481)
T ss_pred CCCCCCCCCchhhhhcccccccccccccccCCceeeeeeee-eeccccceEehhhhcCcceeeeeeccccceeeeeccCc
Confidence 0 000 0011111111 23789999999999888 99999999999999999999
Q ss_pred eEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccC
Q 004581 213 LLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPI 292 (744)
Q Consensus 213 ~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 292 (744)
.+..+.+|....+.++-+|..+++++++.|.+.++||++..-. .+..+++|+..|++..|.
T Consensus 306 ~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~----------------sV~VFQGHtdtVTS~vF~--- 366 (481)
T KOG0300|consen 306 VVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQ----------------SVAVFQGHTDTVTSVVFN--- 366 (481)
T ss_pred eeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcc----------------eeeeecccccceeEEEEe---
Confidence 9999999999999999999999999999999999999985432 267889999999999996
Q ss_pred CCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecC
Q 004581 293 SREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSH 372 (744)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 372 (744)
.+ ..+++|+.|.+|++||++++...
T Consensus 367 ------~d-------------------------d~vVSgSDDrTvKvWdLrNMRsp------------------------ 391 (481)
T KOG0300|consen 367 ------TD-------------------------DRVVSGSDDRTVKVWDLRNMRSP------------------------ 391 (481)
T ss_pred ------cC-------------------------CceeecCCCceEEEeeeccccCc------------------------
Confidence 22 27999999999999999875421
Q ss_pred CeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCC
Q 004581 373 TSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKV 451 (744)
Q Consensus 373 ~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~ 451 (744)
+..+.. ...+..++++..+..||.- ++..|++|+++.
T Consensus 392 -------------------------------------lATIRt--dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG--- 429 (481)
T KOG0300|consen 392 -------------------------------------LATIRT--DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG--- 429 (481)
T ss_pred -------------------------------------ceeeec--CCccceeEeecCCceEEeccCCceEEEEecCC---
Confidence 111111 2567778888888899985 788999999964
Q ss_pred CCceEEeeeccCCcccccccEEEEeeCC--CEEEEEeCCCcEEEEEccC
Q 004581 452 GQGEWIINKRQLPRKLQFAHSMIFSYDS--SQLIIAGHDRRIYVVDVSS 498 (744)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~v~~i~~spd~--~~l~~~~~dg~i~v~d~~~ 498 (744)
..+-.+....-.+|...++|++|..+- .-|++++-|..+.-|.+..
T Consensus 430 -~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 430 -NRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred -CccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 343334444556777789999996543 3567888899999999864
No 81
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=4.7e-28 Score=250.01 Aligned_cols=280 Identities=19% Similarity=0.211 Sum_probs=208.4
Q ss_pred CeEEEEe--cCCeEEEEEecC--------CC-ceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccC-----
Q 004581 98 RRVALAC--DDGCVRIYRITD--------SD-ELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL----- 161 (744)
Q Consensus 98 ~~la~~~--~dg~i~iwd~~~--------~~-~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~----- 161 (744)
..+|+|+ .|+.++||+... .. ..........|.+.|+|+.|+|||++||+|++|+.|.||....
T Consensus 26 ~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~ 105 (942)
T KOG0973|consen 26 VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGT 105 (942)
T ss_pred eeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcc
Confidence 5899999 899999998751 01 1122245668999999999999999999999999999999762
Q ss_pred -------------CceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEE
Q 004581 162 -------------GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNAL 227 (744)
Q Consensus 162 -------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l 227 (744)
.++...+. +|...|..++|+|++ +|++++.|++|.+||..+.+.+..+.+|.+.|..+
T Consensus 106 ~fgs~g~~~~vE~wk~~~~l~--------~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGv 177 (942)
T KOG0973|consen 106 VFGSTGGAKNVESWKVVSILR--------GHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGV 177 (942)
T ss_pred cccccccccccceeeEEEEEe--------cCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccce
Confidence 11344444 799999999999999 99999999999999999999999999999999999
Q ss_pred EEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccC
Q 004581 228 AAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSR 307 (744)
Q Consensus 228 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~ 307 (744)
.|.|-|++|++-+.|++|++|+... |.....+..+...+
T Consensus 178 s~DP~Gky~ASqsdDrtikvwrt~d-----------------w~i~k~It~pf~~~------------------------ 216 (942)
T KOG0973|consen 178 SWDPIGKYFASQSDDRTLKVWRTSD-----------------WGIEKSITKPFEES------------------------ 216 (942)
T ss_pred EECCccCeeeeecCCceEEEEEccc-----------------ceeeEeeccchhhC------------------------
Confidence 9999999999999999999999554 11111111111000
Q ss_pred CCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEE
Q 004581 308 GREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDIL 387 (744)
Q Consensus 308 ~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~ 387 (744)
T Consensus 217 -------------------------------------------------------------------------------- 216 (942)
T KOG0973|consen 217 -------------------------------------------------------------------------------- 216 (942)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE--cC---CceEEEEeecCCCCCceEEeeecc
Q 004581 388 SVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS--DH---VKPSLFELKKGKVGQGEWIINKRQ 462 (744)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~--~~---~~v~l~~~~~~~~~~~~~~~~~~~ 462 (744)
........+.|||||++|++. .. ..+.|.+-. .|... ..
T Consensus 217 ----------------------------~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~-------tWk~~-~~ 260 (942)
T KOG0973|consen 217 ----------------------------PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERG-------TWKVD-KD 260 (942)
T ss_pred ----------------------------CCcceeeecccCCCcCeecchhhccCCcceeEEEecC-------Cceee-ee
Confidence 000122333455555555551 11 223333221 24333 56
Q ss_pred CCcccccccEEEEeeC-----CC------------EEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEE
Q 004581 463 LPRKLQFAHSMIFSYD-----SS------------QLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITK 525 (744)
Q Consensus 463 ~~~~~~~v~~i~~spd-----~~------------~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 525 (744)
+.+|..++.++.|+|- .+ .+|+|+.|++|.||.....+++.....- ....|..
T Consensus 261 LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l----------f~~SI~D 330 (942)
T KOG0973|consen 261 LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL----------FNKSIVD 330 (942)
T ss_pred eecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhh----------hcCceee
Confidence 7788888999999761 11 5788999999999998777766554432 4678999
Q ss_pred EEECCCCCEEEEEeCCCcEEEEECCCc
Q 004581 526 MFTSSDGQWLAAVNCFGDVYIFNLEIQ 552 (744)
Q Consensus 526 l~~spdg~~las~~~dg~i~iwd~~~~ 552 (744)
++|||||-.|.++|.||+|.++.++..
T Consensus 331 msWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 331 MSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred eeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 999999999999999999999999643
No 82
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.4e-28 Score=244.57 Aligned_cols=298 Identities=19% Similarity=0.236 Sum_probs=211.9
Q ss_pred ceeEEee-ccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEe
Q 004581 26 KQKIVLQ-SIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC 104 (744)
Q Consensus 26 ~~~~~~~-~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 104 (744)
...+.++ .|.+.||+|.||+|| ++||+||
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DG--------------------------------------------------KyLAsaG 286 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDG--------------------------------------------------KYLASAG 286 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCC--------------------------------------------------ceeeecC
Confidence 3444566 899999999999999 6999999
Q ss_pred cCCeEEEEEecCCCceeEeecccCccCcEEEE-------------EEec---CCC--EEEEEeCCCeEEEEEcc----CC
Q 004581 105 DDGCVRIYRITDSDELIYHRSLPRVSGRVLSV-------------TWSA---DGN--MLYSGSSDGYIRSWDAK----LG 162 (744)
Q Consensus 105 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~-------------~~s~---dg~--~l~t~~~dg~i~vwd~~----~~ 162 (744)
.|+.|+||.+...+... .+.+.-.++ .-++ .++ ..-.+..... .+.+.. ..
T Consensus 287 eD~virVWkVie~e~~~------~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~-~~~p~~~f~f~e 359 (712)
T KOG0283|consen 287 EDGVIRVWKVIESERMR------VAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPC-VLLPLKAFVFSE 359 (712)
T ss_pred CCceEEEEEEeccchhc------ccccccchhhhhhhhccccCccccccccccccccccccccCCcc-ccCCCccccccc
Confidence 99999999997433211 111111111 1111 011 1112222222 122211 12
Q ss_pred ceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcC-CCCEEEeecC
Q 004581 163 YEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAP-SHNRVFSTGS 241 (744)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~~~~~ 241 (744)
++++.+. +|...|..+.|+.+++|++++.|.+|++|++...++++.|. |..-|+|++|+| |.+++++|+.
T Consensus 360 kP~~ef~--------GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSL 430 (712)
T KOG0283|consen 360 KPFCEFK--------GHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSL 430 (712)
T ss_pred cchhhhh--------ccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeeccc
Confidence 3444454 89999999999999999999999999999999999999987 899999999999 6789999999
Q ss_pred CCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccc
Q 004581 242 DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWA 321 (744)
Q Consensus 242 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 321 (744)
||.|+||++...+ +.....-..-|+++++. |||+
T Consensus 431 D~KvRiWsI~d~~------------------Vv~W~Dl~~lITAvcy~---------PdGk------------------- 464 (712)
T KOG0283|consen 431 DGKVRLWSISDKK------------------VVDWNDLRDLITAVCYS---------PDGK------------------- 464 (712)
T ss_pred ccceEEeecCcCe------------------eEeehhhhhhheeEEec---------cCCc-------------------
Confidence 9999999999876 33333334779999997 7776
Q ss_pred cCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCC
Q 004581 322 HLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSS 401 (744)
Q Consensus 322 ~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~ 401 (744)
..+.|+.+|.+++|+....+...
T Consensus 465 -----~avIGt~~G~C~fY~t~~lk~~~---------------------------------------------------- 487 (712)
T KOG0283|consen 465 -----GAVIGTFNGYCRFYDTEGLKLVS---------------------------------------------------- 487 (712)
T ss_pred -----eEEEEEeccEEEEEEccCCeEEE----------------------------------------------------
Confidence 89999999999999887532100
Q ss_pred CCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeC-CC
Q 004581 402 GGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYD-SS 480 (744)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd-~~ 480 (744)
... | ... .+ +...+ . .|+.+.|.|. ..
T Consensus 488 ----------~~~------I---~~~-----------------------~~--------Kk~~~-~-rITG~Q~~p~~~~ 515 (712)
T KOG0283|consen 488 ----------DFH------I---RLH-----------------------NK--------KKKQG-K-RITGLQFFPGDPD 515 (712)
T ss_pred ----------eee------E---eec-----------------------cC--------ccccC-c-eeeeeEecCCCCC
Confidence 000 0 000 00 11111 1 6788888763 34
Q ss_pred EEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcc
Q 004581 481 QLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQR 553 (744)
Q Consensus 481 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~ 553 (744)
.|++.+.|..|+|||..+.+++..|++... ...-....|+.||++|++++.|..|+||+++...
T Consensus 516 ~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n---------~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 516 EVLVTSNDSRIRIYDGRDKDLVHKFKGFRN---------TSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred eEEEecCCCceEEEeccchhhhhhhccccc---------CCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 677788899999999988899999998532 2333556899999999999999999999987554
No 83
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1e-27 Score=223.50 Aligned_cols=289 Identities=17% Similarity=0.184 Sum_probs=233.3
Q ss_pred eEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCC
Q 004581 28 KIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDG 107 (744)
Q Consensus 28 ~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg 107 (744)
...+..|.-+|.||+++|+. .+..+++.++
T Consensus 135 ~~~~~~H~~s~~~vals~d~--------------------------------------------------~~~fsask~g 164 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDD--------------------------------------------------KRVFSASKDG 164 (479)
T ss_pred ceeeccccCcceEEEeeccc--------------------------------------------------cceeecCCCc
Confidence 45677899999999999999 5888999999
Q ss_pred eEEEEEecCCCceeEee--------------cc-cCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecC
Q 004581 108 CVRIYRITDSDELIYHR--------------SL-PRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGL 172 (744)
Q Consensus 108 ~i~iwd~~~~~~~~~~~--------------~~-~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~ 172 (744)
+|.=|++.++....+.. .- .+|...|.+++.|+||++||+|+.|..|.||+.++.+.++.++
T Consensus 165 ~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~--- 241 (479)
T KOG0299|consen 165 TILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFK--- 241 (479)
T ss_pred ceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhccc---
Confidence 99999998766431111 11 3788899999999999999999999999999999999999988
Q ss_pred CCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcc
Q 004581 173 GGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKAS 251 (744)
Q Consensus 173 ~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~ 251 (744)
+|...|.+++|-..- .+++++.|+.|++|+++....+.++.+|...|..|....-++.+-+|+.|+++++|++.
T Consensus 242 -----ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ 316 (479)
T KOG0299|consen 242 -----GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP 316 (479)
T ss_pred -----ccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecc
Confidence 899999999998766 89999999999999999999999999999999999999888877778899999999996
Q ss_pred cCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEe
Q 004581 252 CESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISA 331 (744)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~ 331 (744)
... .-.+++|...+.|++|- +...+++|
T Consensus 317 ees------------------qlifrg~~~sidcv~~I----------------------------------n~~HfvsG 344 (479)
T KOG0299|consen 317 EES------------------QLIFRGGEGSIDCVAFI----------------------------------NDEHFVSG 344 (479)
T ss_pred ccc------------------eeeeeCCCCCeeeEEEe----------------------------------cccceeec
Confidence 654 34567888899999984 22389999
Q ss_pred cCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEE
Q 004581 332 GDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLV 411 (744)
Q Consensus 332 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (744)
+.+|.|.+|++...+.+-
T Consensus 345 SdnG~IaLWs~~KKkplf-------------------------------------------------------------- 362 (479)
T KOG0299|consen 345 SDNGSIALWSLLKKKPLF-------------------------------------------------------------- 362 (479)
T ss_pred cCCceEEEeeecccCcee--------------------------------------------------------------
Confidence 999999999987643211
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcE
Q 004581 412 QVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRI 491 (744)
Q Consensus 412 ~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i 491 (744)
....+|. +.|+. ....+...|++++..|...++|+|+.+|.|
T Consensus 363 ~~~~AHg-------v~~~~-------------------------------~~~~~~~Witsla~i~~sdL~asGS~~G~v 404 (479)
T KOG0299|consen 363 TSRLAHG-------VIPEL-------------------------------DPVNGNFWITSLAVIPGSDLLASGSWSGCV 404 (479)
T ss_pred Eeecccc-------ccCCc-------------------------------cccccccceeeeEecccCceEEecCCCCce
Confidence 1111110 00000 000111388999999999999999999999
Q ss_pred EEEEccCC----ceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEE
Q 004581 492 YVVDVSSS----ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV 538 (744)
Q Consensus 492 ~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~ 538 (744)
++|.+.++ +++..+. ..+-|++++|+++|++|++|
T Consensus 405 rLW~i~~g~r~i~~l~~ls------------~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 405 RLWKIEDGLRAINLLYSLS------------LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred EEEEecCCccccceeeecc------------cccEEEEEEEccCCCEEEEe
Confidence 99999877 4455555 47889999999999977666
No 84
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.96 E-value=6.9e-27 Score=225.73 Aligned_cols=169 Identities=16% Similarity=0.163 Sum_probs=133.1
Q ss_pred CCeEEEEEcC-CCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEee-CCCEEEEEeCCCcEEEEE
Q 004581 419 RKIICSTISN-SGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY-DSSQLIIAGHDRRIYVVD 495 (744)
Q Consensus 419 ~~i~~~~~s~-~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-d~~~l~~~~~dg~i~v~d 495 (744)
..|+.+.|.| |...||+ +.++.|++|++..++. ...-......+..|...|+++.|+| -...|++++.|-+|++||
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl-~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGL-PENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCC-CcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 5688888988 4466777 6999999999987332 2222233466778888999999999 567889999999999999
Q ss_pred ccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceE-EEEecCCCCceeEEeecCC
Q 004581 496 VSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQH-WFISRLEGASVTAAGFPPQ 574 (744)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~l~~sp~ 574 (744)
+.+++....|.+ |.+.|..++|||||+.+|+.+.||+|+||+-.+.+.. ..-++.-+..--.+.|.-
T Consensus 707 l~~~~~~~~l~g-----------HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wac- 774 (1012)
T KOG1445|consen 707 LANAKLYSRLVG-----------HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWAC- 774 (1012)
T ss_pred hhhhhhhheecc-----------CcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEe-
Confidence 999999999998 9999999999999999999999999999998776543 222222233445677888
Q ss_pred CCCeEEEEecCC----eEEEEEcCCCcccc
Q 004581 575 NNNVLIITTSSN----QVYVFDVEAKQLGE 600 (744)
Q Consensus 575 ~~~~l~~~~~d~----~v~vwd~~~~~~~~ 600 (744)
||+++++.+-|. +|.+||.++-.+.+
T Consensus 775 dgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~p 804 (1012)
T KOG1445|consen 775 DGRIVIVVGFDKSSERQVQMYDAQTLDLRP 804 (1012)
T ss_pred cCcEEEEecccccchhhhhhhhhhhccCCc
Confidence 999999887664 88899987665433
No 85
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.1e-27 Score=205.70 Aligned_cols=226 Identities=20% Similarity=0.285 Sum_probs=189.9
Q ss_pred cCCCeEEEEEccCCceeEEeec--cCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccc
Q 004581 12 SIDGSVSEWDLYDLKQKIVLQS--IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDEL 89 (744)
Q Consensus 12 ~~d~~i~iwd~~~~~~~~~~~~--h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (744)
...|.+.|-++...+-+..+.. -...+..++|+++..
T Consensus 35 ~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e----------------------------------------- 73 (311)
T KOG0277|consen 35 AGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHE----------------------------------------- 73 (311)
T ss_pred ccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCc-----------------------------------------
Confidence 3578999999875555554443 357899999999874
Q ss_pred cccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecC-CCEEEEEeCCCeEEEEEccCCceEEEE
Q 004581 90 HEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSAD-GNMLYSGSSDGYIRSWDAKLGYEIYRI 168 (744)
Q Consensus 90 ~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~d-g~~l~t~~~dg~i~vwd~~~~~~~~~~ 168 (744)
+.+++++.||+++|||..-. -.+++.++.|...|.++.|++- ++.+++++.|++|++|+...+..+.++
T Consensus 74 --------~~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf 143 (311)
T KOG0277|consen 74 --------NQVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF 143 (311)
T ss_pred --------ceEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee
Confidence 57889999999999997522 2244899999999999999984 557788899999999999999999998
Q ss_pred EecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcC-CCCEEEeecCCCeE
Q 004581 169 TVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAP-SHNRVFSTGSDGQV 245 (744)
Q Consensus 169 ~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~~~~~dg~i 245 (744)
. +|...|+...|+|.. .+++++.|+++++||++.......+..|...|+|+.|+. +.+.|+||+.|+.|
T Consensus 144 ~--------gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~v 215 (311)
T KOG0277|consen 144 N--------GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLV 215 (311)
T ss_pred c--------CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceE
Confidence 8 899999999999976 899999999999999987444445999999999999997 55788899999999
Q ss_pred EEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCC
Q 004581 246 ILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGV 325 (744)
Q Consensus 246 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 325 (744)
+.||++.-.. ++..+.+|.-.|+.++++ |.. .
T Consensus 216 r~wDir~~r~----------------pl~eL~gh~~AVRkvk~S---------ph~-----------------------~ 247 (311)
T KOG0277|consen 216 RGWDIRNLRT----------------PLFELNGHGLAVRKVKFS---------PHH-----------------------A 247 (311)
T ss_pred EEEehhhccc----------------cceeecCCceEEEEEecC---------cch-----------------------h
Confidence 9999998663 367789999999999997 332 2
Q ss_pred cEEEEecCCCeEEEEecCc
Q 004581 326 PMLISAGDDTKLFAYCANE 344 (744)
Q Consensus 326 ~~l~s~~~d~~i~~~~~~~ 344 (744)
.+|++++.|-++++||...
T Consensus 248 ~lLaSasYDmT~riw~~~~ 266 (311)
T KOG0277|consen 248 SLLASASYDMTVRIWDPER 266 (311)
T ss_pred hHhhhccccceEEeccccc
Confidence 4899999999999999874
No 86
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=1.1e-26 Score=238.20 Aligned_cols=194 Identities=18% Similarity=0.192 Sum_probs=161.8
Q ss_pred CCCCeeEEecCCCeEEEEEccCCcee-------------EEeeccCcceeEEeecc-CCCccccccccccccCCccccCC
Q 004581 3 LPGGRLFSSSIDGSVSEWDLYDLKQK-------------IVLQSIDFSIWQMAVAP-SNSSLMHAVTNSDHIGNGYLNDK 68 (744)
Q Consensus 3 ~~~~~l~~~~~d~~i~iwd~~~~~~~-------------~~~~~h~~~i~~v~~sp-~~~~~~~~~~~~~~~~~~~~~~~ 68 (744)
+++..+++++.+..+..|+...+..+ ..+.+|.+.|.+++|+| ++
T Consensus 30 ~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~--------------------- 88 (493)
T PTZ00421 30 WDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDP--------------------- 88 (493)
T ss_pred CCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCC---------------------
Confidence 45577888888888888876443322 24778999999999999 66
Q ss_pred CCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCc----eeEeecccCccCcEEEEEEecCC-C
Q 004581 69 SNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDE----LIYHRSLPRVSGRVLSVTWSADG-N 143 (744)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~----~~~~~~~~~h~~~V~~~~~s~dg-~ 143 (744)
++||+|+.|++|+|||+.++.. ......+.+|...|.+++|+|++ +
T Consensus 89 -----------------------------~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~ 139 (493)
T PTZ00421 89 -----------------------------QKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN 139 (493)
T ss_pred -----------------------------CEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC
Confidence 5899999999999999975421 11236788999999999999986 6
Q ss_pred EEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeecccc
Q 004581 144 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG 222 (744)
Q Consensus 144 ~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~ 222 (744)
+|++++.|++|+|||+++++.+..+. .|...|.+++|+|++ .|++++.|+.|++||+++++.+.++.+|.+
T Consensus 140 iLaSgs~DgtVrIWDl~tg~~~~~l~--------~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~ 211 (493)
T PTZ00421 140 VLASAGADMVVNVWDVERGKAVEVIK--------CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHAS 211 (493)
T ss_pred EEEEEeCCCEEEEEECCCCeEEEEEc--------CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCC
Confidence 99999999999999999999888876 688899999999999 899999999999999999999999999976
Q ss_pred c-eeEEEEcCCCCEEEeec----CCCeEEEEEcccCc
Q 004581 223 D-VNALAAAPSHNRVFSTG----SDGQVILYKASCES 254 (744)
Q Consensus 223 ~-v~~l~~~~~~~~l~~~~----~dg~i~iw~~~~~~ 254 (744)
. +..+.|.+++..+++++ .|+.|++||++...
T Consensus 212 ~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 212 AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 5 45678999888888754 47999999997643
No 87
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=3e-27 Score=222.98 Aligned_cols=304 Identities=13% Similarity=0.106 Sum_probs=225.4
Q ss_pred ecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCC
Q 004581 124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGS 202 (744)
Q Consensus 124 ~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~ 202 (744)
..+.+|+..|.++++.|.|-.|++|+.|.+|++||+.......... ....-.....|.++.|++.| +|++.+....
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~f---r~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSF---RQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhh---hccCcccccccceeeecCCCCeEEEEecCcc
Confidence 5677899999999999999999999999999999996533221111 01111456789999999999 8888888888
Q ss_pred EEEEeCCCcceEE------------EeeccccceeEEEEcCCC-CEEEeecCCCeEEEEEcccCcCCCCCCCCcccccce
Q 004581 203 VQFWDSRHGTLLQ------------AHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKK 269 (744)
Q Consensus 203 i~vwd~~~~~~~~------------~~~~h~~~v~~l~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 269 (744)
.+++|-...+... .-++|.+.++|.+|+|+. ..+++++.||++++|++...... .+
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q-----------~q 306 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ-----------LQ 306 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh-----------ee
Confidence 9999976333322 236799999999999975 57889999999999999875420 00
Q ss_pred EEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCC
Q 004581 270 WIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFS 349 (744)
Q Consensus 270 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~ 349 (744)
-.......+..-.+...+|+ +|++ .|++|..||+|.+|+......-
T Consensus 307 Vik~k~~~g~Rv~~tsC~~n---------rdg~------------------------~iAagc~DGSIQ~W~~~~~~v~- 352 (641)
T KOG0772|consen 307 VIKTKPAGGKRVPVTSCAWN---------RDGK------------------------LIAAGCLDGSIQIWDKGSRTVR- 352 (641)
T ss_pred EEeeccCCCcccCceeeecC---------CCcc------------------------hhhhcccCCceeeeecCCcccc-
Confidence 11111122334456777776 6665 8999999999999997542210
Q ss_pred CcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCC--CCeEEEEEc
Q 004581 350 PHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKAS--RKIICSTIS 427 (744)
Q Consensus 350 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~s 427 (744)
....+...|. ..|+|++||
T Consensus 353 -----------------------------------------------------------p~~~vk~AH~~g~~Itsi~FS 373 (641)
T KOG0772|consen 353 -----------------------------------------------------------PVMKVKDAHLPGQDITSISFS 373 (641)
T ss_pred -----------------------------------------------------------cceEeeeccCCCCceeEEEec
Confidence 1122233333 489999999
Q ss_pred CCCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeC------CCcEEEEEccCCc
Q 004581 428 NSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH------DRRIYVVDVSSSE 500 (744)
Q Consensus 428 ~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~------dg~i~v~d~~~~~ 500 (744)
+||++|++ |.|+++++|+++........| ..++. .-+-+.++||||.++|++|.. .|.+.+||..+.+
T Consensus 374 ~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~----tgL~t-~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 374 YDGNYLLSRGFDDTLKVWDLRQFKKPLNVR----TGLPT-PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred cccchhhhccCCCceeeeeccccccchhhh----cCCCc-cCCCCccccCCCceEEEecccccCCCCCceEEEEecccee
Confidence 99999999 899999999998743333321 11222 125678899999999999853 4689999999999
Q ss_pred eeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC
Q 004581 501 LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE 550 (744)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~ 550 (744)
.++.+.- ....|..+.|+|.=+.|.+++.||.++||--.
T Consensus 449 ~v~ki~i-----------~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 449 TVYKIDI-----------STASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred eEEEecC-----------CCceEEEEeecchhhheeeecCCCceEEEECc
Confidence 9888887 57889999999999999999999999987543
No 88
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.4e-27 Score=210.72 Aligned_cols=299 Identities=13% Similarity=0.166 Sum_probs=238.1
Q ss_pred EEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCCe
Q 004581 29 IVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGC 108 (744)
Q Consensus 29 ~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~ 108 (744)
..+..|..++.+.+||||| .++|+|+.|-.
T Consensus 106 ~ylt~HK~~cR~aafs~DG--------------------------------------------------~lvATGsaD~S 135 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDG--------------------------------------------------SLVATGSADAS 135 (430)
T ss_pred EEEeecccceeeeeeCCCC--------------------------------------------------cEEEccCCcce
Confidence 3577899999999999999 69999999999
Q ss_pred EEEEEecC------------C---CceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCC
Q 004581 109 VRIYRITD------------S---DELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLG 173 (744)
Q Consensus 109 i~iwd~~~------------~---~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~ 173 (744)
|+|.|++. + ..-..+++|..|...|+++.|+|-...|++|+.|++|+++|+..-...+.++.-
T Consensus 136 IKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~-- 213 (430)
T KOG0640|consen 136 IKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF-- 213 (430)
T ss_pred EEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHh--
Confidence 99999861 1 111345888899999999999999999999999999999998654433333211
Q ss_pred CCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEe---eccccceeEEEEcCCCCEEEeecCCCeEEEEE
Q 004581 174 GLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAH---SFHKGDVNALAAAPSHNRVFSTGSDGQVILYK 249 (744)
Q Consensus 174 ~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~ 249 (744)
....+|.++.|+|.| .|+.|....++++||+++.++...- ..|.+.|+++.+++.+++.++|+.||.|++||
T Consensus 214 ----qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwD 289 (430)
T KOG0640|consen 214 ----QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWD 289 (430)
T ss_pred ----hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeec
Confidence 356789999999999 8999999999999999998876543 46889999999999999999999999999998
Q ss_pred cccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEE
Q 004581 250 ASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLI 329 (744)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~ 329 (744)
--++.. |+.+
T Consensus 290 GVS~rC---------------------------v~t~------------------------------------------- 299 (430)
T KOG0640|consen 290 GVSNRC---------------------------VRTI------------------------------------------- 299 (430)
T ss_pred cccHHH---------------------------HHHH-------------------------------------------
Confidence 544320 0000
Q ss_pred EecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcce
Q 004581 330 SAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSL 409 (744)
Q Consensus 330 s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 409 (744)
T Consensus 300 -------------------------------------------------------------------------------- 299 (430)
T KOG0640|consen 300 -------------------------------------------------------------------------------- 299 (430)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCC
Q 004581 410 LVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR 489 (744)
Q Consensus 410 ~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg 489 (744)
...| ....|++..|+.+|+|+++.+.|.
T Consensus 300 ----~~AH------------------------------------------------~gsevcSa~Ftkn~kyiLsSG~DS 327 (430)
T KOG0640|consen 300 ----GNAH------------------------------------------------GGSEVCSAVFTKNGKYILSSGKDS 327 (430)
T ss_pred ----Hhhc------------------------------------------------CCceeeeEEEccCCeEEeecCCcc
Confidence 0000 011577788999999999999999
Q ss_pred cEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeC-CCcEEEEECCCcceEEEEecCCCCceeE
Q 004581 490 RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC-FGDVYIFNLEIQRQHWFISRLEGASVTA 568 (744)
Q Consensus 490 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 568 (744)
.+++|++.+++.+.++.+.... +-...-+...|+....|++.-+. .+.+.-||..+......+...|++.++.
T Consensus 328 ~vkLWEi~t~R~l~~YtGAg~t------grq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~ 401 (430)
T KOG0640|consen 328 TVKLWEISTGRMLKEYTGAGTT------GRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRW 401 (430)
T ss_pred eeeeeeecCCceEEEEecCCcc------cchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceE
Confidence 9999999999999998873210 01222345567777778777664 5679999999998887888889999999
Q ss_pred EeecCCCCCeEEEEecCCeEEEEE
Q 004581 569 AGFPPQNNNVLIITTSSNQVYVFD 592 (744)
Q Consensus 569 l~~sp~~~~~l~~~~~d~~v~vwd 592 (744)
+.-|| .+.-+++++.|..+++|-
T Consensus 402 i~HSP-~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 402 IVHSP-VEPAFMTCSDDFRARFWY 424 (430)
T ss_pred EEeCC-CCCceeeecccceeeeee
Confidence 99999 999999999999999995
No 89
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6e-27 Score=229.82 Aligned_cols=184 Identities=22% Similarity=0.304 Sum_probs=159.5
Q ss_pred CeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCC
Q 004581 6 GRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD 85 (744)
Q Consensus 6 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (744)
+.||+| ....|.+|+..+++.......+.+.|+++.|+++|
T Consensus 189 n~laVa-lg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G-------------------------------------- 229 (484)
T KOG0305|consen 189 NVLAVA-LGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDG-------------------------------------- 229 (484)
T ss_pred CeEEEE-ecceEEEEecCCCceEEeEecCCCceEEEEECCCC--------------------------------------
Confidence 345554 45689999999999888777778999999999999
Q ss_pred cccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccC-ccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCce
Q 004581 86 SDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPR-VSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYE 164 (744)
Q Consensus 86 ~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~ 164 (744)
.+||+|..+|.|.|||....+.+ +.+.+ |...|-+++|+ +..+.+|+.|+.|..+|+...+.
T Consensus 230 ------------~~LavG~~~g~v~iwD~~~~k~~---~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~ 292 (484)
T KOG0305|consen 230 ------------SHLAVGTSDGTVQIWDVKEQKKT---RTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH 292 (484)
T ss_pred ------------CEEEEeecCCeEEEEehhhcccc---ccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh
Confidence 69999999999999999877766 77777 99999999998 67899999999999999998776
Q ss_pred EEE-EEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCC-CCEEEeec-
Q 004581 165 IYR-ITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPS-HNRVFSTG- 240 (744)
Q Consensus 165 ~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~~~~- 240 (744)
... +. +|...|..+.|++|+ ++++|+.|+.+.|||.....++..+..|.+.|..++|+|- ...||+|+
T Consensus 293 ~~~~~~--------~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG 364 (484)
T KOG0305|consen 293 VVSTLQ--------GHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG 364 (484)
T ss_pred hhhhhh--------cccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC
Confidence 665 33 799999999999999 9999999999999999888899999999999999999994 45777754
Q ss_pred -CCCeEEEEEcccC
Q 004581 241 -SDGQVILYKASCE 253 (744)
Q Consensus 241 -~dg~i~iw~~~~~ 253 (744)
.|+.|++||..++
T Consensus 365 s~D~~i~fwn~~~g 378 (484)
T KOG0305|consen 365 SADRCIKFWNTNTG 378 (484)
T ss_pred CcccEEEEEEcCCC
Confidence 3777888876653
No 90
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1.1e-26 Score=238.75 Aligned_cols=184 Identities=18% Similarity=0.242 Sum_probs=155.3
Q ss_pred ecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCccccc
Q 004581 11 SSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELH 90 (744)
Q Consensus 11 ~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (744)
|+.++.|.+|+......+..+.+|.+.|.+++|+|+..
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~------------------------------------------ 87 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFS------------------------------------------ 87 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCC------------------------------------------
Confidence 56688999999888888889999999999999999731
Q ss_pred ccccccCCeEEEEecCCeEEEEEecCCCc-e----eEeecccCccCcEEEEEEecCCCE-EEEEeCCCeEEEEEccCCce
Q 004581 91 EQSVVEDRRVALACDDGCVRIYRITDSDE-L----IYHRSLPRVSGRVLSVTWSADGNM-LYSGSSDGYIRSWDAKLGYE 164 (744)
Q Consensus 91 ~~~~~~~~~la~~~~dg~i~iwd~~~~~~-~----~~~~~~~~h~~~V~~~~~s~dg~~-l~t~~~dg~i~vwd~~~~~~ 164 (744)
.+||+|+.|+.|+|||+.++.. . .....+.+|...|.+++|+|++.. |++++.|++|++||+.+++.
T Consensus 88 -------~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~ 160 (568)
T PTZ00420 88 -------EILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR 160 (568)
T ss_pred -------CEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE
Confidence 5899999999999999975432 1 122467899999999999999875 57899999999999999987
Q ss_pred EEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEE-----EEcCCCCEEEe
Q 004581 165 IYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNAL-----AAAPSHNRVFS 238 (744)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l-----~~~~~~~~l~~ 238 (744)
+..+. +...|.+++|+++| .|++++.|+.|+|||+++++.+.++.+|.+.+.+. .|++++.+|++
T Consensus 161 ~~~i~---------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlT 231 (568)
T PTZ00420 161 AFQIN---------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILS 231 (568)
T ss_pred EEEEe---------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEE
Confidence 77664 45679999999999 78888899999999999999999999998765433 34688899999
Q ss_pred ecCCC----eEEEEEccc
Q 004581 239 TGSDG----QVILYKASC 252 (744)
Q Consensus 239 ~~~dg----~i~iw~~~~ 252 (744)
++.|+ .|++||++.
T Consensus 232 tG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 232 TGFSKNNMREMKLWDLKN 249 (568)
T ss_pred EEcCCCCccEEEEEECCC
Confidence 88774 799999986
No 91
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.9e-27 Score=239.24 Aligned_cols=305 Identities=15% Similarity=0.193 Sum_probs=212.5
Q ss_pred Eeeccc-CccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecC-CCC--CCCCceeEEEEEEec---CC--
Q 004581 122 YHRSLP-RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGL-GGL--GSGPELCIWSLLSLR---CG-- 192 (744)
Q Consensus 122 ~~~~~~-~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~-~~~--~~~~~~~v~~~~~~~---~~-- 192 (744)
..+.+. .|.+.|.++.||+||++||+||.|+.|+||.+..-+. ..+.... ... .......+..+..++ .+
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~-~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESER-MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccch-hcccccccchhhhhhhhccccCccccccccccccc
Confidence 345666 8999999999999999999999999999999865332 1111100 000 000000011111111 00
Q ss_pred -eEEEEcCCCCEEEEeCC----CcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCccccc
Q 004581 193 -TLVSADSTGSVQFWDSR----HGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVI 267 (744)
Q Consensus 193 -~l~s~~~dg~i~vwd~~----~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 267 (744)
..-.+.....+. .+.. ..++++.+.+|.++|+.|.|+.++ +|++++.|.+|++|++....
T Consensus 337 s~~~~~~~s~~~~-~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~------------- 401 (712)
T KOG0283|consen 337 SSSRKGSQSPCVL-LPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKE------------- 401 (712)
T ss_pred cccccccCCcccc-CCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcc-------------
Confidence 111122222222 2221 156788999999999999999765 89999999999999999876
Q ss_pred ceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCC
Q 004581 268 KKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTK 347 (744)
Q Consensus 268 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~ 347 (744)
.-....|..-|+|++|.| -| ..++++|+.|+.+++|++...+
T Consensus 402 -----CL~~F~HndfVTcVaFnP--------vD------------------------DryFiSGSLD~KvRiWsI~d~~- 443 (712)
T KOG0283|consen 402 -----CLKVFSHNDFVTCVAFNP--------VD------------------------DRYFISGSLDGKVRLWSISDKK- 443 (712)
T ss_pred -----eeeEEecCCeeEEEEecc--------cC------------------------CCcEeecccccceEEeecCcCe-
Confidence 234458999999999973 22 2499999999999999886411
Q ss_pred CCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEc
Q 004581 348 FSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTIS 427 (744)
Q Consensus 348 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 427 (744)
+
T Consensus 444 ------------------------------------V------------------------------------------- 444 (712)
T KOG0283|consen 444 ------------------------------------V------------------------------------------- 444 (712)
T ss_pred ------------------------------------e-------------------------------------------
Confidence 0
Q ss_pred CCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeecc
Q 004581 428 NSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTP 507 (744)
Q Consensus 428 ~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 507 (744)
..| ..+. .-|++++|+|||++.++|+.+|.+++|+....++...+.-
T Consensus 445 --------------------------v~W----~Dl~---~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 445 --------------------------VDW----NDLR---DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred --------------------------Eee----hhhh---hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 001 1111 2688999999999999999999999999987776655443
Q ss_pred CcccccccCCCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCcceEEEEecCCC-CceeEEeecCCCCCeEEEEecC
Q 004581 508 CREEHDREIQPSEPPITKMFTSSDGQ-WLAAVNCFGDVYIFNLEIQRQHWFISRLEG-ASVTAAGFPPQNNNVLIITTSS 585 (744)
Q Consensus 508 ~~~~~~~~~~~~~~~i~~l~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~l~~~~~d 585 (744)
... ..+...|. .|+.+.|.|... .+++.+.|..|+|||..+..++..+++++. ..-....|+. ||++++++++|
T Consensus 492 ~~~--~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~-Dgk~IVs~seD 567 (712)
T KOG0283|consen 492 RLH--NKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS-DGKHIVSASED 567 (712)
T ss_pred eec--cCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc-CCCEEEEeecC
Confidence 111 11112234 899999987433 466667899999999988888888887765 3446678999 99999999999
Q ss_pred CeEEEEEcCCC
Q 004581 586 NQVYVFDVEAK 596 (744)
Q Consensus 586 ~~v~vwd~~~~ 596 (744)
..|++|+...-
T Consensus 568 s~VYiW~~~~~ 578 (712)
T KOG0283|consen 568 SWVYIWKNDSF 578 (712)
T ss_pred ceEEEEeCCCC
Confidence 99999998544
No 92
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=8.4e-27 Score=206.72 Aligned_cols=309 Identities=14% Similarity=0.114 Sum_probs=223.3
Q ss_pred EeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCCeE
Q 004581 30 VLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCV 109 (744)
Q Consensus 30 ~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i 109 (744)
.|++|.+.|++|+|+.|| .+||+++.|+.|
T Consensus 81 ~LKgH~~~vt~~~FsSdG--------------------------------------------------K~lat~~~Dr~I 110 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDG--------------------------------------------------KKLATISGDRSI 110 (420)
T ss_pred hhhccCCceeeeEEcCCC--------------------------------------------------ceeEEEeCCceE
Confidence 578999999999999999 589999999999
Q ss_pred EEEEecCCCceeEeeccc--CccCcEEEEEEecCCCEEEEEeC-CCeEEEEEccC---CceEEE-EEecCCCCCCCCcee
Q 004581 110 RIYRITDSDELIYHRSLP--RVSGRVLSVTWSADGNMLYSGSS-DGYIRSWDAKL---GYEIYR-ITVGLGGLGSGPELC 182 (744)
Q Consensus 110 ~iwd~~~~~~~~~~~~~~--~h~~~V~~~~~s~dg~~l~t~~~-dg~i~vwd~~~---~~~~~~-~~~~~~~~~~~~~~~ 182 (744)
+||++.+-..... +.++ -.-+.-+.++|+||.+-++.... ..++++|.+.. |..... .....-.....|...
T Consensus 111 r~w~~~DF~~~eH-r~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~ 189 (420)
T KOG2096|consen 111 RLWDVRDFENKEH-RCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVD 189 (420)
T ss_pred EEEecchhhhhhh-hHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccc
Confidence 9999973221110 1111 01124578899999987666554 45799997643 221111 111111123356777
Q ss_pred EEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCC
Q 004581 183 IWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGL 261 (744)
Q Consensus 183 v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 261 (744)
+..+-...++ +|++++.|..|.+|+++ |+.++++......-+..+.+|+|+++++++..--|++|..--...+
T Consensus 190 ~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG----- 263 (420)
T KOG2096|consen 190 IINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDG----- 263 (420)
T ss_pred eEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCc-----
Confidence 7777777677 89999999999999999 9999999887778888999999999999999999999987644321
Q ss_pred CcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEe
Q 004581 262 SSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYC 341 (744)
Q Consensus 262 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~ 341 (744)
..+.-..+..+.+|...|..++|+ ++.. .+++.+.||++++||
T Consensus 264 ----~fqev~rvf~LkGH~saV~~~aFs---------n~S~------------------------r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 264 ----TFQEVKRVFSLKGHQSAVLAAAFS---------NSST------------------------RAVTVSKDGKWRIWD 306 (420)
T ss_pred ----chhhhhhhheeccchhheeeeeeC---------CCcc------------------------eeEEEecCCcEEEee
Confidence 112223466789999999999997 5544 899999999999999
Q ss_pred cCccCCCC----CcccCCCCCCCccccccceeecCCeEEEEEeCC-eEEEEEeeccCCcccCCCCCCCCCcceEEEEEec
Q 004581 342 ANEFTKFS----PHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC-RLDILSVRLENNVESRSSSGGHASTSLLVQVKSK 416 (744)
Q Consensus 342 ~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (744)
..-..... .....+.|..........++++|++..++...+ .++++.-..++ ..-.++..
T Consensus 307 tdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~---------------~~~~~e~~ 371 (420)
T KOG2096|consen 307 TDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGK---------------DYPELEDI 371 (420)
T ss_pred ccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCc---------------cchhHHHh
Confidence 87422111 111122222222233448899999998887655 88888776644 33445566
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCceEEEEee
Q 004581 417 ASRKIICSTISNSGMLFAYSDHVKPSLFELK 447 (744)
Q Consensus 417 ~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~ 447 (744)
|...|.+++|+++|++++++.|..++++.-.
T Consensus 372 h~~~Is~is~~~~g~~~atcGdr~vrv~~nt 402 (420)
T KOG2096|consen 372 HSTTISSISYSSDGKYIATCGDRYVRVIRNT 402 (420)
T ss_pred hcCceeeEEecCCCcEEeeecceeeeeecCC
Confidence 7789999999999999999999999998743
No 93
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.7e-26 Score=203.56 Aligned_cols=278 Identities=17% Similarity=0.211 Sum_probs=207.2
Q ss_pred CccCcEEEEEEec-CCCEEEEEeCCCeEEEEEccC-CceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEE
Q 004581 128 RVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAKL-GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQ 204 (744)
Q Consensus 128 ~h~~~V~~~~~s~-dg~~l~t~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~ 204 (744)
..+..|.+|+||| ...+|+.++.||+||+|+++. |..+.+-. ..|..+|.+++|+.|| .+++|+.|+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~-------~~~~~PvL~v~WsddgskVf~g~~Dk~~k 97 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQ-------QSHDGPVLDVCWSDDGSKVFSGGCDKQAK 97 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhh-------hccCCCeEEEEEccCCceEEeeccCCceE
Confidence 4567899999999 555666889999999999987 45444332 2689999999999999 899999999999
Q ss_pred EEeCCCcceEEEeeccccceeEEEEcCCCC--EEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCc
Q 004581 205 FWDSRHGTLLQAHSFHKGDVNALAAAPSHN--RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHD 282 (744)
Q Consensus 205 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 282 (744)
+||+.++ .+..+..|.++|.++.|-+... .|++|+-|.+|+.||.+.... +..+ .....
T Consensus 98 ~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p-----------------v~t~-~LPeR 158 (347)
T KOG0647|consen 98 LWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP-----------------VATL-QLPER 158 (347)
T ss_pred EEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe-----------------eeee-eccce
Confidence 9999998 5667888999999999987665 899999999999999987552 2221 22233
Q ss_pred ceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCcc
Q 004581 283 VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPI 362 (744)
Q Consensus 283 v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (744)
++++.+ -.++++.+..++.|.+|++++.....
T Consensus 159 vYa~Dv-----------------------------------~~pm~vVata~r~i~vynL~n~~te~------------- 190 (347)
T KOG0647|consen 159 VYAADV-----------------------------------LYPMAVVATAERHIAVYNLENPPTEF------------- 190 (347)
T ss_pred eeehhc-----------------------------------cCceeEEEecCCcEEEEEcCCCcchh-------------
Confidence 444433 12378888889999999997533211
Q ss_pred ccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCce
Q 004581 363 HLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKP 441 (744)
Q Consensus 363 ~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~v 441 (744)
.++..+-...++|++..+|.+-.|. +-+|.+
T Consensus 191 ------------------------------------------------k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv 222 (347)
T KOG0647|consen 191 ------------------------------------------------KRIESPLKWQTRCVACFQDKDGFALGSIEGRV 222 (347)
T ss_pred ------------------------------------------------hhhcCcccceeeEEEEEecCCceEeeeecceE
Confidence 1111122355778888887766566 588888
Q ss_pred EEEEeecCCCCCceEEeeecc----CCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCC
Q 004581 442 SLFELKKGKVGQGEWIINKRQ----LPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQ 517 (744)
Q Consensus 442 ~l~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 517 (744)
.+..++.+.. ..-+.++-.+ .....-.|++|+|+|.-..|++++.||+..+||-+....+.+.+.
T Consensus 223 ~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~---------- 291 (347)
T KOG0647|consen 223 AIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSET---------- 291 (347)
T ss_pred EEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCc----------
Confidence 8888876322 2222222211 111233789999999999999999999999999877777777776
Q ss_pred CCCCceEEEEECCCCCEEEEEe
Q 004581 518 PSEPPITKMFTSSDGQWLAAVN 539 (744)
Q Consensus 518 ~~~~~i~~l~~spdg~~las~~ 539 (744)
|..+|++.+|+.+|.++|.+.
T Consensus 292 -~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 292 -HPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred -CCCccceeEecCCCCEEEEEe
Confidence 899999999999999998764
No 94
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=2e-26 Score=212.91 Aligned_cols=271 Identities=18% Similarity=0.244 Sum_probs=227.4
Q ss_pred CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCC
Q 004581 98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS 177 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 177 (744)
..+++|+.|..+.++|..+++.+ ..|.||...|+.+.|+|+...+++++.|-.|+||.+....+.....
T Consensus 232 ~~ilTGG~d~~av~~d~~s~q~l---~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~-------- 300 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPSNQIL---ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSR-------- 300 (506)
T ss_pred CcceecCCCCceEEEecchhhhh---hhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccc--------
Confidence 58999999999999999977777 8999999999999999999999999999999999998777666665
Q ss_pred CCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeecc--ccceeEEEEcCCCCEEEeecCCCeEEEEEcccCc
Q 004581 178 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFH--KGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 254 (744)
Q Consensus 178 ~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~ 254 (744)
.|+.+|..+..+|.| +|++++.|++..+.|+++|.++...... .-.+++++|+|||..|.+|..||.|++||+..+.
T Consensus 301 ~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~ 380 (506)
T KOG0289|consen 301 PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT 380 (506)
T ss_pred cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc
Confidence 699999999999999 9999999999999999999988776643 2358999999999999999999999999999876
Q ss_pred CCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCC
Q 004581 255 IGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD 334 (744)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d 334 (744)
. +..+.+|+.+|++++|+ .+|- +|++++.|
T Consensus 381 ~-----------------~a~Fpght~~vk~i~Fs---------ENGY------------------------~Lat~add 410 (506)
T KOG0289|consen 381 N-----------------VAKFPGHTGPVKAISFS---------ENGY------------------------WLATAADD 410 (506)
T ss_pred c-----------------cccCCCCCCceeEEEec---------cCce------------------------EEEEEecC
Confidence 3 67889999999999996 4443 89999999
Q ss_pred CeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEE
Q 004581 335 TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK 414 (744)
Q Consensus 335 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (744)
+.|++||++....+. .+.
T Consensus 411 ~~V~lwDLRKl~n~k--------------------------------------------------------------t~~ 428 (506)
T KOG0289|consen 411 GSVKLWDLRKLKNFK--------------------------------------------------------------TIQ 428 (506)
T ss_pred CeEEEEEehhhcccc--------------------------------------------------------------eee
Confidence 999999998755332 122
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEE
Q 004581 415 SKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVV 494 (744)
Q Consensus 415 ~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~ 494 (744)
......+.++.|.+.|++|+.+ ...+++|.... ..+-|..- ..+..|....+.+.|....+++++++.|..++++
T Consensus 429 l~~~~~v~s~~fD~SGt~L~~~-g~~l~Vy~~~k---~~k~W~~~-~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 429 LDEKKEVNSLSFDQSGTYLGIA-GSDLQVYICKK---KTKSWTEI-KELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred ccccccceeEEEcCCCCeEEee-cceeEEEEEec---ccccceee-ehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 2233568889999999999887 44566666653 33445443 4456666788999999999999999999998887
Q ss_pred Ec
Q 004581 495 DV 496 (744)
Q Consensus 495 d~ 496 (744)
.+
T Consensus 504 a~ 505 (506)
T KOG0289|consen 504 AL 505 (506)
T ss_pred ec
Confidence 64
No 95
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.2e-26 Score=216.34 Aligned_cols=301 Identities=18% Similarity=0.202 Sum_probs=230.5
Q ss_pred ecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEE-EEec--------CCCCC-CCCceeEEEEEEecCC-
Q 004581 124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYR-ITVG--------LGGLG-SGPELCIWSLLSLRCG- 192 (744)
Q Consensus 124 ~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~-~~~~--------~~~~~-~~~~~~v~~~~~~~~~- 192 (744)
..+..|.-+|++|+++||+++.++++.+|+|.-|++.+|+.... +..+ ..... ..|...+.+++.++||
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 66778999999999999999999999999999999999986522 2210 01112 3788999999999999
Q ss_pred eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEE
Q 004581 193 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIY 272 (744)
Q Consensus 193 ~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 272 (744)
+|++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....+++++.|++|++|++.... +
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s-----------------~ 278 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS-----------------Y 278 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH-----------------H
Confidence 99999999999999999999999999999999999999888899999999999999998766 3
Q ss_pred EeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcc
Q 004581 273 VGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHE 352 (744)
Q Consensus 273 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~ 352 (744)
+.++.+|...|.++... .-++ .+-+|+.|+++++|++....++
T Consensus 279 vetlyGHqd~v~~IdaL---------~reR------------------------~vtVGgrDrT~rlwKi~eesql---- 321 (479)
T KOG0299|consen 279 VETLYGHQDGVLGIDAL---------SRER------------------------CVTVGGRDRTVRLWKIPEESQL---- 321 (479)
T ss_pred HHHHhCCccceeeechh---------cccc------------------------eEEeccccceeEEEecccccee----
Confidence 67889999999888763 2222 5556669999999987431100
Q ss_pred cCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCE
Q 004581 353 ICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGML 432 (744)
Q Consensus 353 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 432 (744)
+.
T Consensus 322 ------------------------------------------------------------if------------------ 323 (479)
T KOG0299|consen 322 ------------------------------------------------------------IF------------------ 323 (479)
T ss_pred ------------------------------------------------------------ee------------------
Confidence 00
Q ss_pred EEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccc
Q 004581 433 FAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEH 512 (744)
Q Consensus 433 la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~ 512 (744)
.++...+-|++|- +...+++|+.+|.|.+|++...+++.+.....+..
T Consensus 324 -------------------------------rg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~ 371 (479)
T KOG0299|consen 324 -------------------------------RGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI 371 (479)
T ss_pred -------------------------------eCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEeecccccc
Confidence 0011134455553 56678899999999999998888887765433221
Q ss_pred cc-cCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCc----ceEEEEecCCCCceeEEeecCCCCCeEEEE-ecCC
Q 004581 513 DR-EIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ----RQHWFISRLEGASVTAAGFPPQNNNVLIIT-TSSN 586 (744)
Q Consensus 513 ~~-~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~-~~d~ 586 (744)
.. ....+...|++++..|...++|+|+.+|.|++|-++.+ +++..++ -.+-|++++|++ +|+.++++ +...
T Consensus 372 ~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls--~~GfVNsl~f~~-sgk~ivagiGkEh 448 (479)
T KOG0299|consen 372 PELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS--LVGFVNSLAFSN-SGKRIVAGIGKEH 448 (479)
T ss_pred CCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc--cccEEEEEEEcc-CCCEEEEeccccc
Confidence 11 22234469999999999999999999999999999877 3333443 236899999999 88866665 3344
Q ss_pred eEEEE
Q 004581 587 QVYVF 591 (744)
Q Consensus 587 ~v~vw 591 (744)
.+--|
T Consensus 449 RlGRW 453 (479)
T KOG0299|consen 449 RLGRW 453 (479)
T ss_pred cccee
Confidence 44334
No 96
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=3.9e-26 Score=202.30 Aligned_cols=277 Identities=16% Similarity=0.176 Sum_probs=213.2
Q ss_pred ccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeC
Q 004581 129 VSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDS 208 (744)
Q Consensus 129 h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~ 208 (744)
.+..|.++.|+|.+..|+.++.||++++||+........+. |..++.+++|.++..+++|+.||.|+.+|+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~---------~~~plL~c~F~d~~~~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK---------HGAPLLDCAFADESTIVTGGLDGQVRRYDL 82 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee---------cCCceeeeeccCCceEEEeccCceEEEEEe
Confidence 46789999999999999999999999999998886666664 899999999999889999999999999999
Q ss_pred CCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeee
Q 004581 209 RHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTV 288 (744)
Q Consensus 209 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 288 (744)
.++... .+..|...|.|+.+++....+++|+.|++|++||.+.... ... ......|.++..
T Consensus 83 n~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~-----------------~~~-~d~~kkVy~~~v 143 (323)
T KOG1036|consen 83 NTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV-----------------VGT-FDQGKKVYCMDV 143 (323)
T ss_pred cCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccc-----------------ccc-cccCceEEEEec
Confidence 977654 5566999999999999888999999999999999986431 111 122336777776
Q ss_pred eccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccce
Q 004581 289 AVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNT 368 (744)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 368 (744)
.++.|+.|+.|..+.+||+++.....+..
T Consensus 144 -----------------------------------~g~~LvVg~~~r~v~iyDLRn~~~~~q~r---------------- 172 (323)
T KOG1036|consen 144 -----------------------------------SGNRLVVGTSDRKVLIYDLRNLDEPFQRR---------------- 172 (323)
T ss_pred -----------------------------------cCCEEEEeecCceEEEEEcccccchhhhc----------------
Confidence 23489999999999999999755332111
Q ss_pred eecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCC-EEEEEcCCceEEEEee
Q 004581 369 IFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGM-LFAYSDHVKPSLFELK 447 (744)
Q Consensus 369 ~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~la~~~~~~v~l~~~~ 447 (744)
...-...++|+++-|++. +++.+-+|.|.+=.++
T Consensus 173 ---------------------------------------------eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d 207 (323)
T KOG1036|consen 173 ---------------------------------------------ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFD 207 (323)
T ss_pred ---------------------------------------------cccceeEEEEEEEecCCCceEEEeecceEEEEccC
Confidence 011125577888888664 5555678877765554
Q ss_pred cC-CCCCceEE--eeeccCCc--ccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCc
Q 004581 448 KG-KVGQGEWI--INKRQLPR--KLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPP 522 (744)
Q Consensus 448 ~~-~~~~~~~~--~~~~~~~~--~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (744)
.. +...+.+. .+.....+ ..-+|++|+|+|-...||+|+.||.|.+||+.+.+.+.+|.. ....
T Consensus 208 ~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~-----------~~~S 276 (323)
T KOG1036|consen 208 DSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK-----------YETS 276 (323)
T ss_pred CchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC-----------CCCc
Confidence 32 11112222 22211111 112899999999999999999999999999999999988887 6788
Q ss_pred eEEEEECCCCCEEEEEeC
Q 004581 523 ITKMFTSSDGQWLAAVNC 540 (744)
Q Consensus 523 i~~l~~spdg~~las~~~ 540 (744)
|.+++|+.||..||+++.
T Consensus 277 I~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 277 ISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEEEEeccCCCeEEEEec
Confidence 999999999999999974
No 97
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=1e-26 Score=219.43 Aligned_cols=305 Identities=16% Similarity=0.152 Sum_probs=218.8
Q ss_pred ceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEec
Q 004581 26 KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACD 105 (744)
Q Consensus 26 ~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 105 (744)
.....+++|...|.++++.|.| .++++|+.
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~G--------------------------------------------------aR~~sGs~ 187 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSG--------------------------------------------------ARFVSGSL 187 (641)
T ss_pred cceEeccCCceEEEEeeecCCC--------------------------------------------------ceeeeccc
Confidence 4455788899999999999999 69999999
Q ss_pred CCeEEEEEecCCC-ceeEeeccc-CccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCC-----CCCCC
Q 004581 106 DGCVRIYRITDSD-ELIYHRSLP-RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLG-----GLGSG 178 (744)
Q Consensus 106 dg~i~iwd~~~~~-~~~~~~~~~-~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~-----~~~~~ 178 (744)
|.+|++||+..-. .+...+.+. .....|.+++|++.|..|++.+....++|+|- .|..+..+..+-+ ...++
T Consensus 188 Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DR-dG~~~~e~~KGDQYI~Dm~nTKG 266 (641)
T KOG0772|consen 188 DYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDR-DGFEIVEFSKGDQYIRDMYNTKG 266 (641)
T ss_pred cceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEcc-CCceeeeeeccchhhhhhhccCC
Confidence 9999999997322 121223332 44568999999999999988888889999995 4555444432111 12348
Q ss_pred CceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCc-ceEEEee-----ccccceeEEEEcCCCCEEEeecCCCeEEEEEc
Q 004581 179 PELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHG-TLLQAHS-----FHKGDVNALAAAPSHNRVFSTGSDGQVILYKA 250 (744)
Q Consensus 179 ~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~-~~~~~~~-----~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~ 250 (744)
|...+++.+|+|+. .+++++.||++++||+... +.++.++ +..-+++.++|++||++|++|..||.|.+|+.
T Consensus 267 Hia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~ 346 (641)
T KOG0772|consen 267 HIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDK 346 (641)
T ss_pred ceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeec
Confidence 99999999999998 7999999999999999863 3344443 23346899999999999999999999999998
Q ss_pred ccCcCCCCCCCCcccccceEEEEeeeeeccC--cceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEE
Q 004581 251 SCESIGPNDGLSSSEVIKKWIYVGSVRAHTH--DVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPML 328 (744)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l 328 (744)
....... .......|.. .|++++|+ +||+ +|
T Consensus 347 ~~~~v~p--------------~~~vk~AH~~g~~Itsi~FS---------~dg~------------------------~L 379 (641)
T KOG0772|consen 347 GSRTVRP--------------VMKVKDAHLPGQDITSISFS---------YDGN------------------------YL 379 (641)
T ss_pred CCccccc--------------ceEeeeccCCCCceeEEEec---------cccc------------------------hh
Confidence 5543211 1334467877 99999998 7776 99
Q ss_pred EEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcc
Q 004581 329 ISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTS 408 (744)
Q Consensus 329 ~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~ 408 (744)
++-+.|+++++||++.++..-...
T Consensus 380 lSRg~D~tLKvWDLrq~kkpL~~~-------------------------------------------------------- 403 (641)
T KOG0772|consen 380 LSRGFDDTLKVWDLRQFKKPLNVR-------------------------------------------------------- 403 (641)
T ss_pred hhccCCCceeeeeccccccchhhh--------------------------------------------------------
Confidence 999999999999999765321100
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEc-------CCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCE
Q 004581 409 LLVQVKSKASRKIICSTISNSGMLFAYSD-------HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQ 481 (744)
Q Consensus 409 ~~~~~~~~~~~~i~~~~~s~~g~~la~~~-------~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~ 481 (744)
........-+.++|||+.++|++|+ .+.+.+|+..+ ... +.+ +.-....|..+.|+|--+.
T Consensus 404 ----tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t----~d~--v~k--i~i~~aSvv~~~WhpkLNQ 471 (641)
T KOG0772|consen 404 ----TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT----LDT--VYK--IDISTASVVRCLWHPKLNQ 471 (641)
T ss_pred ----cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc----eee--EEE--ecCCCceEEEEeecchhhh
Confidence 0011113345566777777777642 23455665443 110 111 1122347888999999999
Q ss_pred EEEEeCCCcEEEEEc
Q 004581 482 LIIAGHDRRIYVVDV 496 (744)
Q Consensus 482 l~~~~~dg~i~v~d~ 496 (744)
|.+|+.||.++||--
T Consensus 472 i~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 472 IFAGSGDGTAHVYYD 486 (641)
T ss_pred eeeecCCCceEEEEC
Confidence 999999999998753
No 98
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1e-25 Score=199.86 Aligned_cols=268 Identities=18% Similarity=0.267 Sum_probs=215.0
Q ss_pred eEEEEecCCeEEEEEecCCC---------ceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEE
Q 004581 99 RVALACDDGCVRIYRITDSD---------ELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRIT 169 (744)
Q Consensus 99 ~la~~~~dg~i~iwd~~~~~---------~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 169 (744)
.+++|+....|.=+++.-.. .+.....+..|.+.|+++|. +|.++|+|+.|-+|+|||+.+...+..+.
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhccee
Confidence 68889998888888775211 12234567799999999999 58999999999999999999998888887
Q ss_pred ecCCCCCCCCceeEEEEEEecCC---eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEE
Q 004581 170 VGLGGLGSGPELCIWSLLSLRCG---TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVI 246 (744)
Q Consensus 170 ~~~~~~~~~~~~~v~~~~~~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~ 246 (744)
.|.+.|+++.|.++- .|++|+.||.|.+|+.....++.++++|.+.|+.++++|.|++.++.+.|+.++
T Consensus 81 --------~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr 152 (362)
T KOG0294|consen 81 --------SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLR 152 (362)
T ss_pred --------ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceee
Confidence 699999999999887 799999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCc
Q 004581 247 LYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVP 326 (744)
Q Consensus 247 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 326 (744)
+||+-.+.. ++
T Consensus 153 ~WNLV~Gr~-------------------------------a~-------------------------------------- 163 (362)
T KOG0294|consen 153 TWNLVRGRV-------------------------------AF-------------------------------------- 163 (362)
T ss_pred eehhhcCcc-------------------------------ce--------------------------------------
Confidence 999987651 00
Q ss_pred EEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCC
Q 004581 327 MLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHAS 406 (744)
Q Consensus 327 ~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~ 406 (744)
+.++.
T Consensus 164 ------------v~~L~--------------------------------------------------------------- 168 (362)
T KOG0294|consen 164 ------------VLNLK--------------------------------------------------------------- 168 (362)
T ss_pred ------------eeccC---------------------------------------------------------------
Confidence 00000
Q ss_pred cceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEe
Q 004581 407 TSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG 486 (744)
Q Consensus 407 ~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~ 486 (744)
...+.+.|+|.|.+++++....|-+|.+.. ...+ .....+ ..+.++.| -++..|++|.
T Consensus 169 ------------~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~---A~v~---~~i~~~---~r~l~~~~-l~~~~L~vG~ 226 (362)
T KOG0294|consen 169 ------------NKATLVSWSPQGDHFVVSGRNKIDIYQLDN---ASVF---REIENP---KRILCATF-LDGSELLVGG 226 (362)
T ss_pred ------------CcceeeEEcCCCCEEEEEeccEEEEEeccc---HhHh---hhhhcc---ccceeeee-cCCceEEEec
Confidence 111225577888888887777788887764 1111 001111 24556666 3788999999
Q ss_pred CCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEE--CCCCCEEEEEeCCCcEEEEECCCcc
Q 004581 487 HDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFT--SSDGQWLAAVNCFGDVYIFNLEIQR 553 (744)
Q Consensus 487 ~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--spdg~~las~~~dg~i~iwd~~~~~ 553 (744)
.|+.|.+||..+..+...|.+ |...|..+.+ .|++.||++++.||.|+|||++...
T Consensus 227 d~~~i~~~D~ds~~~~~~~~A-----------H~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 227 DNEWISLKDTDSDTPLTEFLA-----------HENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred CCceEEEeccCCCccceeeec-----------chhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 999999999998899999998 9999999984 6788999999999999999998653
No 99
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.6e-25 Score=197.38 Aligned_cols=296 Identities=14% Similarity=0.145 Sum_probs=222.2
Q ss_pred CceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEe
Q 004581 25 LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC 104 (744)
Q Consensus 25 ~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 104 (744)
.++.+.|....+.|.+|.|+++| .+|++++
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G--------------------------------------------------~~litss 33 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDG--------------------------------------------------LLLITSS 33 (311)
T ss_pred cccccccccCCCceeEEEecCCC--------------------------------------------------CEEEEec
Confidence 44555666678899999999999 5888899
Q ss_pred cCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeC--CCeEEEEEccCCceEEEEEecCCCCCCCCcee
Q 004581 105 DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS--DGYIRSWDAKLGYEIYRITVGLGGLGSGPELC 182 (744)
Q Consensus 105 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 182 (744)
+|.+++|||..++..+ +++..++-.|..++|......++.++. |.+||..++.+.+.++.+. +|...
T Consensus 34 ~dDsl~LYd~~~g~~~---~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~--------GH~~~ 102 (311)
T KOG1446|consen 34 EDDSLRLYDSLSGKQV---KTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFP--------GHKKR 102 (311)
T ss_pred CCCeEEEEEcCCCcee---eEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcC--------CCCce
Confidence 9999999999988887 778878888999999888888887776 8899999999999999998 89999
Q ss_pred EEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCC
Q 004581 183 IWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGL 261 (744)
Q Consensus 183 v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 261 (744)
|.+++.+|-+ .+++++.|++|++||++..++...+..... ..+||.|+|-.+|++.....|++||++.-...+..
T Consensus 103 V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~-- 178 (311)
T KOG1446|consen 103 VNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFT-- 178 (311)
T ss_pred EEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCeEEEEEecccCCCCce--
Confidence 9999999988 999999999999999998888777665433 34799999998888887779999999874421110
Q ss_pred CcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEe
Q 004581 262 SSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYC 341 (744)
Q Consensus 262 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~ 341 (744)
...+ . +
T Consensus 179 -----------------------tf~i-------------------------------------------~-~------- 184 (311)
T KOG1446|consen 179 -----------------------TFSI-------------------------------------------T-D------- 184 (311)
T ss_pred -----------------------eEcc-------------------------------------------C-C-------
Confidence 0000 0 0
Q ss_pred cCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCe
Q 004581 342 ANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKI 421 (744)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 421 (744)
......
T Consensus 185 --------------------------------------------------------------------------~~~~ew 190 (311)
T KOG1446|consen 185 --------------------------------------------------------------------------NDEAEW 190 (311)
T ss_pred --------------------------------------------------------------------------CCccce
Confidence 000223
Q ss_pred EEEEEcCCCCEEEEE-cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCc
Q 004581 422 ICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE 500 (744)
Q Consensus 422 ~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~ 500 (744)
..+.|||||+++..+ ..+.+++.+--. +...-..... +....-.-...|+||++++++|+.||+|.+|++++|.
T Consensus 191 ~~l~FS~dGK~iLlsT~~s~~~~lDAf~---G~~~~tfs~~--~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 191 TDLEFSPDGKSILLSTNASFIYLLDAFD---GTVKSTFSGY--PNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGK 265 (311)
T ss_pred eeeEEcCCCCEEEEEeCCCcEEEEEccC---CcEeeeEeec--cCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCc
Confidence 445566666665554 444445554433 1111111111 1111122577899999999999999999999999999
Q ss_pred eeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC
Q 004581 501 LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE 550 (744)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~ 550 (744)
.+..+.+. +.+++.++.|+|.-.++|+++ ..+.+|=..
T Consensus 266 ~v~~~~~~----------~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~ 303 (311)
T KOG1446|consen 266 KVAVLRGP----------NGGPVSCVRFNPRYAMFVSAS--SNLVFWLPD 303 (311)
T ss_pred EeeEecCC----------CCCCccccccCCceeeeeecC--ceEEEEecc
Confidence 99999884 688899999999977777764 457777544
No 100
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.2e-26 Score=218.04 Aligned_cols=219 Identities=20% Similarity=0.290 Sum_probs=187.2
Q ss_pred CCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccc
Q 004581 14 DGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQS 93 (744)
Q Consensus 14 d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (744)
.-.+.+|+..+...+.++......|.++.|-.||
T Consensus 47 S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG---------------------------------------------- 80 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDG---------------------------------------------- 80 (487)
T ss_pred ccEEEEEecchhhhhhhHHhhccceeEEEeecCC----------------------------------------------
Confidence 3579999999988888888889999999999999
Q ss_pred cccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCC-EEEEEeCCCeEEEEEccCCceEEEEEecC
Q 004581 94 VVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKLGYEIYRITVGL 172 (744)
Q Consensus 94 ~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~ 172 (744)
++||+|.+.|.|+|||..+...+ +.+.+|+.+|..+.|+|+++ .|++|+.|+.+++||+.+......+.
T Consensus 81 ----~LlaaGD~sG~V~vfD~k~r~iL---R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~--- 150 (487)
T KOG0310|consen 81 ----RLLAAGDESGHVKVFDMKSRVIL---RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS--- 150 (487)
T ss_pred ----eEEEccCCcCcEEEeccccHHHH---HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec---
Confidence 68999999999999996543344 88999999999999999655 67788889999999999888655665
Q ss_pred CCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCc-ceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEE
Q 004581 173 GGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHG-TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK 249 (744)
Q Consensus 173 ~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~ 249 (744)
+|+..|.|.+|+|.. .+++|+.||.|++||.++. ..+.++. |..+|..+.+.|.|..+++++. ..|++||
T Consensus 151 -----~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWD 223 (487)
T KOG0310|consen 151 -----GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWD 223 (487)
T ss_pred -----CCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEE
Confidence 899999999999976 7999999999999999986 5666665 8999999999999999999865 5699999
Q ss_pred cccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEE
Q 004581 250 ASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLI 329 (744)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~ 329 (744)
+.++.. .+..+..|...|+|+.+. .++. .|+
T Consensus 224 l~~G~q----------------ll~~~~~H~KtVTcL~l~---------s~~~------------------------rLl 254 (487)
T KOG0310|consen 224 LTTGGQ----------------LLTSMFNHNKTVTCLRLA---------SDST------------------------RLL 254 (487)
T ss_pred ecCCce----------------ehhhhhcccceEEEEEee---------cCCc------------------------eEe
Confidence 996652 244455599999999996 3443 999
Q ss_pred EecCCCeEEEEecCc
Q 004581 330 SAGDDTKLFAYCANE 344 (744)
Q Consensus 330 s~~~d~~i~~~~~~~ 344 (744)
+++-|+.+++||..+
T Consensus 255 S~sLD~~VKVfd~t~ 269 (487)
T KOG0310|consen 255 SGSLDRHVKVFDTTN 269 (487)
T ss_pred ecccccceEEEEccc
Confidence 999999999999765
No 101
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=8.7e-28 Score=216.76 Aligned_cols=289 Identities=15% Similarity=0.237 Sum_probs=219.3
Q ss_pred eEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCC
Q 004581 28 KIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDG 107 (744)
Q Consensus 28 ~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg 107 (744)
+..|.+|...|.|+|=+|.. + ..+|+|+.||
T Consensus 59 v~~L~gHrdGV~~lakhp~~--l-----------------------------------------------s~~aSGs~DG 89 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNK--L-----------------------------------------------STVASGSCDG 89 (433)
T ss_pred hhhccccccccchhhcCcch--h-----------------------------------------------hhhhccccCc
Confidence 34678999999999999975 2 3799999999
Q ss_pred eEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEE
Q 004581 108 CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLL 187 (744)
Q Consensus 108 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 187 (744)
.|+|||+....++ .++.+|.+.|..+++.. ..+++++.|.+|+.|.++. ..++.+. ....+..+.
T Consensus 90 ~VkiWnlsqR~~~---~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~til---------g~s~~~gId 154 (433)
T KOG0268|consen 90 EVKIWNLSQRECI---RTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTIL---------GKSVYLGID 154 (433)
T ss_pred eEEEEehhhhhhh---heeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeee---------ccccccccc
Confidence 9999999877766 89999999999999986 7789999999999999854 5666664 445566666
Q ss_pred EecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCC-CEEEeecCCCeEEEEEcccCcCCCCCCCCccc
Q 004581 188 SLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSE 265 (744)
Q Consensus 188 ~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 265 (744)
.+..+ .+++++.+ |.|||.+...+++++.--...|.++.|+|.. ..|++|+.|+.|.+||++....
T Consensus 155 h~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P---------- 222 (433)
T KOG0268|consen 155 HHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP---------- 222 (433)
T ss_pred cccccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc----------
Confidence 65555 67777654 9999999999999999888899999999976 4566777999999999998762
Q ss_pred ccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCcc
Q 004581 266 VIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEF 345 (744)
Q Consensus 266 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~ 345 (744)
+... .....-..++|+ | ..-.+++|.+|..++.||++..
T Consensus 223 -------l~KV-i~~mRTN~Iswn---------P------------------------eafnF~~a~ED~nlY~~DmR~l 261 (433)
T KOG0268|consen 223 -------LKKV-ILTMRTNTICWN---------P------------------------EAFNFVAANEDHNLYTYDMRNL 261 (433)
T ss_pred -------ccee-eeeccccceecC---------c------------------------cccceeeccccccceehhhhhh
Confidence 1111 111222344554 2 2225666777777777666542
Q ss_pred CCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEE
Q 004581 346 TKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICST 425 (744)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 425 (744)
..
T Consensus 262 ~~------------------------------------------------------------------------------ 263 (433)
T KOG0268|consen 262 SR------------------------------------------------------------------------------ 263 (433)
T ss_pred cc------------------------------------------------------------------------------
Confidence 10
Q ss_pred EcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeee
Q 004581 426 ISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTF 505 (744)
Q Consensus 426 ~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~ 505 (744)
.. ....+|...+.+++|||.|+-+++|+.|.+|+||....+.....+
T Consensus 264 --------------------------p~-------~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiY 310 (433)
T KOG0268|consen 264 --------------------------PL-------NVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIY 310 (433)
T ss_pred --------------------------cc-------hhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhh
Confidence 00 234456668999999999999999999999999999766543333
Q ss_pred ccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcce
Q 004581 506 TPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ 554 (744)
Q Consensus 506 ~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~ 554 (744)
... -...|.++.||.|.+|+++||.|++|++|.....+.
T Consensus 311 htk----------RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 311 HTK----------RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred hHh----------hhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 221 235699999999999999999999999998765443
No 102
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1e-26 Score=227.47 Aligned_cols=283 Identities=19% Similarity=0.288 Sum_probs=235.6
Q ss_pred CceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEe
Q 004581 25 LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC 104 (744)
Q Consensus 25 ~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 104 (744)
-+..+.+.+|...|..+++.+.. .+++++
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~---------------------------------------------------~i~s~s 32 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV---------------------------------------------------CIISGS 32 (745)
T ss_pred ceeEEEeccCccchheeEecCCe---------------------------------------------------EEeecC
Confidence 35667899999999999988776 899999
Q ss_pred cCCeEEEEEecCCCceeEeecccCccCcEEE-EEEec-CCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCcee
Q 004581 105 DDGCVRIYRITDSDELIYHRSLPRVSGRVLS-VTWSA-DGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELC 182 (744)
Q Consensus 105 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~-~~~s~-dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 182 (744)
.||++++|+-. ++.....+.+.+|.+.|.+ ++|-+ ++-.|++|+.|.+|.+|...+..++..+. +|+..
T Consensus 33 Rd~t~~vw~~~-~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~Lk--------gH~sn 103 (745)
T KOG0301|consen 33 RDGTVKVWAKK-GKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLK--------GHKSN 103 (745)
T ss_pred CCCceeeeecc-CcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhh--------ccccc
Confidence 99999999986 4444333678889998888 89886 44569999999999999999999999998 89999
Q ss_pred EEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCC
Q 004581 183 IWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLS 262 (744)
Q Consensus 183 v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 262 (744)
|.++....++.+++|+.|.++++|-. +++...+.+|++.|+++++-|++ .++||+.|.+|++|.-.+
T Consensus 104 VC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~---------- 170 (745)
T KOG0301|consen 104 VCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGT---------- 170 (745)
T ss_pred eeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCc----------
Confidence 99999888889999999999999965 57788899999999999999988 899999999999998744
Q ss_pred cccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEec
Q 004581 263 SSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCA 342 (744)
Q Consensus 263 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~ 342 (744)
.++.+.+|++.|+.+++- ++. .+++++.||.|++|++
T Consensus 171 ---------~l~tf~gHtD~VRgL~vl---------~~~-------------------------~flScsNDg~Ir~w~~ 207 (745)
T KOG0301|consen 171 ---------LLKTFSGHTDCVRGLAVL---------DDS-------------------------HFLSCSNDGSIRLWDL 207 (745)
T ss_pred ---------hhhhhccchhheeeeEEe---------cCC-------------------------CeEeecCCceEEEEec
Confidence 367889999999999985 332 6999999999999988
Q ss_pred CccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeE
Q 004581 343 NEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKII 422 (744)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 422 (744)
... .+
T Consensus 208 ~ge---------------------------------------------------------------~l------------ 212 (745)
T KOG0301|consen 208 DGE---------------------------------------------------------------VL------------ 212 (745)
T ss_pred cCc---------------------------------------------------------------ee------------
Confidence 420 01
Q ss_pred EEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCcee
Q 004581 423 CSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELL 502 (744)
Q Consensus 423 ~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~ 502 (744)
.++.+|...+.++....++..++++++|++++||+.. ++.
T Consensus 213 --------------------------------------~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~ 252 (745)
T KOG0301|consen 213 --------------------------------------LEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECV 252 (745)
T ss_pred --------------------------------------eeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceE
Confidence 1223444466677777788899999999999999975 777
Q ss_pred eeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC
Q 004581 503 HTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE 550 (744)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~ 550 (744)
+.+.- ....|+++.+-++|. +++|+.||.|+||..+
T Consensus 253 q~I~l-----------PttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 253 QVITL-----------PTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEEec-----------CccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 77774 345899999988887 6778889999999886
No 103
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.8e-26 Score=225.81 Aligned_cols=263 Identities=23% Similarity=0.379 Sum_probs=219.9
Q ss_pred CCCeeEEecCCCeEEEEEccCCceeE--EeeccCcceeE-EeeccCCCccccccccccccCCccccCCCCCCCCCcCccC
Q 004581 4 PGGRLFSSSIDGSVSEWDLYDLKQKI--VLQSIDFSIWQ-MAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSES 80 (744)
Q Consensus 4 ~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~h~~~i~~-v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (744)
++..++++|+||++++|+-.....+. .+.+|.+.|.+ +++-+..+
T Consensus 24 ~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~-------------------------------- 71 (745)
T KOG0301|consen 24 DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDK-------------------------------- 71 (745)
T ss_pred CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccC--------------------------------
Confidence 45678999999999999976544443 47778888877 77776321
Q ss_pred CCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 004581 81 ENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAK 160 (744)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~ 160 (744)
.+|++|+.|.+|.+|......++ .+|.+|+..|.|++...++. |++||.|.++++|-.
T Consensus 72 -----------------~~l~~g~~D~~i~v~~~~~~~P~---~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~- 129 (745)
T KOG0301|consen 72 -----------------GRLVVGGMDTTIIVFKLSQAEPL---YTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI- 129 (745)
T ss_pred -----------------cceEeecccceEEEEecCCCCch---hhhhccccceeeeecCCcCc-eEecccccceEEecc-
Confidence 37999999999999999877777 89999999999999888887 999999999999975
Q ss_pred CCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeec
Q 004581 161 LGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTG 240 (744)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~ 240 (744)
+++...+. +|...||++.+.|++.+++|+.|.+|++|.- ++.++++.+|...|..+++.+++ .+++++
T Consensus 130 -~~l~~~l~--------gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScs 197 (745)
T KOG0301|consen 130 -GELVYSLQ--------GHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCS 197 (745)
T ss_pred -hhhhcccC--------CcchheeeeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeec
Confidence 66666666 8999999999999999999999999999976 78999999999999999999875 599999
Q ss_pred CCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcccccccc
Q 004581 241 SDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKW 320 (744)
Q Consensus 241 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 320 (744)
.||.|++|++.... +....+|+.-|+++... .++
T Consensus 198 NDg~Ir~w~~~ge~------------------l~~~~ghtn~vYsis~~---------~~~------------------- 231 (745)
T KOG0301|consen 198 NDGSIRLWDLDGEV------------------LLEMHGHTNFVYSISMA---------LSD------------------- 231 (745)
T ss_pred CCceEEEEeccCce------------------eeeeeccceEEEEEEec---------CCC-------------------
Confidence 99999999996544 77889999999999854 222
Q ss_pred ccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCC
Q 004581 321 AHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSS 400 (744)
Q Consensus 321 ~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~ 400 (744)
..++++++|+++++|+...
T Consensus 232 -----~~Ivs~gEDrtlriW~~~e-------------------------------------------------------- 250 (745)
T KOG0301|consen 232 -----GLIVSTGEDRTLRIWKKDE-------------------------------------------------------- 250 (745)
T ss_pred -----CeEEEecCCceEEEeecCc--------------------------------------------------------
Confidence 3899999999999998752
Q ss_pred CCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeec
Q 004581 401 SGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKK 448 (744)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~ 448 (744)
+.+.+..+ ...+.++.+-++|..++.++||.||+|....
T Consensus 251 --------~~q~I~lP-ttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 251 --------CVQVITLP-TTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred --------eEEEEecC-ccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 12222222 2457778888899999999999999999874
No 104
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.7e-25 Score=229.35 Aligned_cols=122 Identities=19% Similarity=0.280 Sum_probs=111.1
Q ss_pred cccCccCcEEEEEEec-CCCEEEEEeCCCeEEEEEccCCc-------eEEEEEecCCCCCCCCceeEEEEEEecCC--eE
Q 004581 125 SLPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAKLGY-------EIYRITVGLGGLGSGPELCIWSLLSLRCG--TL 194 (744)
Q Consensus 125 ~~~~h~~~V~~~~~s~-dg~~l~t~~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l 194 (744)
.+.+|.+.|++++|+| ++++|++|+.|++|++||+.++. .+..+. +|...|.+++|+|++ .|
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~--------gH~~~V~~l~f~P~~~~iL 141 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ--------GHTKKVGIVSFHPSAMNVL 141 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec--------CCCCcEEEEEeCcCCCCEE
Confidence 4779999999999999 88999999999999999997653 334444 799999999999975 79
Q ss_pred EEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCc
Q 004581 195 VSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 254 (744)
Q Consensus 195 ~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~ 254 (744)
++++.|++|++||+++++.+..+.+|...|.+++|+|+|.+|++++.|++|++||++++.
T Consensus 142 aSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~ 201 (493)
T PTZ00421 142 ASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT 201 (493)
T ss_pred EEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc
Confidence 999999999999999999999999999999999999999999999999999999998765
No 105
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4e-26 Score=202.43 Aligned_cols=296 Identities=16% Similarity=0.155 Sum_probs=206.8
Q ss_pred ecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCc--eEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcC
Q 004581 124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY--EIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADS 199 (744)
Q Consensus 124 ~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~ 199 (744)
..|++|.+.|++++|+.||+.|||++.|++|++|+++.-. .-+.++.. . .-+.-+.+.|.||- .+++.-.
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n---v---e~dhpT~V~FapDc~s~vv~~~~ 153 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN---V---EYDHPTRVVFAPDCKSVVVSVKR 153 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc---c---cCCCceEEEECCCcceEEEEEcc
Confidence 6788999999999999999999999999999999987622 11222211 1 11245678999998 5667777
Q ss_pred CCCEEEEeCCC---cceE---------EEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCccccc
Q 004581 200 TGSVQFWDSRH---GTLL---------QAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVI 267 (744)
Q Consensus 200 dg~i~vwd~~~---~~~~---------~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 267 (744)
..++++|.+.. |... ..-+-|...|..+-...++.+|++++.|..|.+|++....
T Consensus 154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~------------- 220 (420)
T KOG2096|consen 154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQL------------- 220 (420)
T ss_pred CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCce-------------
Confidence 78899997653 2211 1123466778888888889999999999999999998432
Q ss_pred ceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCC
Q 004581 268 KKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTK 347 (744)
Q Consensus 268 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~ 347 (744)
+..+......
T Consensus 221 -----L~~idtnq~~----------------------------------------------------------------- 230 (420)
T KOG2096|consen 221 -----LQSIDTNQSS----------------------------------------------------------------- 230 (420)
T ss_pred -----eeeecccccc-----------------------------------------------------------------
Confidence 1111111111
Q ss_pred CCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEc
Q 004581 348 FSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTIS 427 (744)
Q Consensus 348 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 427 (744)
-...++|
T Consensus 231 -------------------------------------------------------------------------n~~aavS 237 (420)
T KOG2096|consen 231 -------------------------------------------------------------------------NYDAAVS 237 (420)
T ss_pred -------------------------------------------------------------------------ccceeeC
Confidence 1123355
Q ss_pred CCCCEEEE-EcCCceEEEEeecCCCC-CceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEcc-------C
Q 004581 428 NSGMLFAY-SDHVKPSLFELKKGKVG-QGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS-------S 498 (744)
Q Consensus 428 ~~g~~la~-~~~~~v~l~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~-------~ 498 (744)
|+|++||+ +-.-.|++|++-....+ .+. -....++.+|...|..++||+++.++++.+.||+++|||.+ +
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqe-v~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQE-VKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhh-hhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 55555555 34444555555432211 110 01125677888899999999999999999999999999984 2
Q ss_pred CceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCe
Q 004581 499 SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNV 578 (744)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~ 578 (744)
.+.+++...+ +-...+.-..++.||+|+.||.+.. ..+++|..++++..-.+...|+..|.+++|++ +|++
T Consensus 317 pk~Lk~g~~p-------l~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~ 387 (420)
T KOG2096|consen 317 PKILKEGSAP-------LHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKY 387 (420)
T ss_pred chHhhcCCcc-------hhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecC-CCcE
Confidence 2333333211 1112344558999999999998754 46999999999988888888999999999999 9999
Q ss_pred EEEEecCCeEEEEE
Q 004581 579 LIITTSSNQVYVFD 592 (744)
Q Consensus 579 l~~~~~d~~v~vwd 592 (744)
+++++ |..++++.
T Consensus 388 ~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 388 IATCG-DRYVRVIR 400 (420)
T ss_pred Eeeec-ceeeeeec
Confidence 99987 67788876
No 106
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=7.4e-28 Score=221.03 Aligned_cols=291 Identities=14% Similarity=0.153 Sum_probs=232.4
Q ss_pred ceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEec
Q 004581 26 KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACD 105 (744)
Q Consensus 26 ~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 105 (744)
.....+..|.+.+..+.|-++. ..|++|+.
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~s--------------------------------------------------dtlatgg~ 195 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNS--------------------------------------------------DTLATGGS 195 (459)
T ss_pred hhhhhhhccccccceeEEccCc--------------------------------------------------chhhhcch
Confidence 3445677899999999999986 48999999
Q ss_pred CCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEE
Q 004581 106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWS 185 (744)
Q Consensus 106 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 185 (744)
|..|++|++..+ ......+|.|-.+.|+++.|.++++.+++++.|+.+++|++..++...++. +|...|++
T Consensus 196 Dr~Ik~W~v~~~-k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLs--------GHtdkVt~ 266 (459)
T KOG0288|consen 196 DRIIKLWNVLGE-KSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLS--------GHTDKVTA 266 (459)
T ss_pred hhhhhhhhcccc-hhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhc--------ccccceee
Confidence 999999999744 445558888999999999999999999999999999999999999999998 89999999
Q ss_pred EEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcc
Q 004581 186 LLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSS 264 (744)
Q Consensus 186 ~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 264 (744)
+.|.... .+++|+.|.+|+.||+....+..++-. ...+..|+.+ ...+++|-.|++|++||.+....
T Consensus 267 ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~--------- 334 (459)
T KOG0288|consen 267 AKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADK--------- 334 (459)
T ss_pred ehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeecccccceEEEeccCCce---------
Confidence 9999887 699999999999999999888877653 4556666665 55688999999999999988762
Q ss_pred cccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCc
Q 004581 265 EVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 344 (744)
Q Consensus 265 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~ 344 (744)
......+. .|+++..+ .++. .|.+++.|.++.+.|+++
T Consensus 335 --------~~sv~~gg-~vtSl~ls---------~~g~------------------------~lLsssRDdtl~viDlRt 372 (459)
T KOG0288|consen 335 --------TRSVPLGG-RVTSLDLS---------MDGL------------------------ELLSSSRDDTLKVIDLRT 372 (459)
T ss_pred --------eeEeecCc-ceeeEeec---------cCCe------------------------EEeeecCCCceeeeeccc
Confidence 44555554 89999886 5554 788889999999999987
Q ss_pred cCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEE
Q 004581 345 FTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICS 424 (744)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 424 (744)
........ ..+ .......+.+
T Consensus 373 ~eI~~~~s-------------------A~g----------------------------------------~k~asDwtrv 393 (459)
T KOG0288|consen 373 KEIRQTFS-------------------AEG----------------------------------------FKCASDWTRV 393 (459)
T ss_pred ccEEEEee-------------------ccc----------------------------------------ccccccccee
Confidence 44221110 000 0111347788
Q ss_pred EEcCCCCEEEEE-cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEE
Q 004581 425 TISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVV 494 (744)
Q Consensus 425 ~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~ 494 (744)
.|||++.|+|+| .++.|+||++..+ ... ...........|++++|+|.|..|++++.++.+.+|
T Consensus 394 vfSpd~~YvaAGS~dgsv~iW~v~tg---KlE---~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 394 VFSPDGSYVAAGSADGSVYIWSVFTG---KLE---KVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EECCCCceeeeccCCCcEEEEEccCc---eEE---EEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 899999999995 9999999999762 211 112233333379999999999999999999999998
No 107
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.9e-27 Score=213.37 Aligned_cols=286 Identities=14% Similarity=0.195 Sum_probs=226.8
Q ss_pred ecccCccCcEEEEEEecCC-CEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCC
Q 004581 124 RSLPRVSGRVLSVTWSADG-NMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGS 202 (744)
Q Consensus 124 ~~~~~h~~~V~~~~~s~dg-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~ 202 (744)
..|.+|...|.|++=+|.. ..+++|+.||.|++||+.+..+...+. .|.+.|..+++.. +.+++++.|.+
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~--------AH~G~V~Gi~v~~-~~~~tvgdDKt 130 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFK--------AHEGLVRGICVTQ-TSFFTVGDDKT 130 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheee--------cccCceeeEEecc-cceEEecCCcc
Confidence 6778999999999999987 789999999999999999999999998 6999999999987 67899999999
Q ss_pred EEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCc
Q 004581 203 VQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHD 282 (744)
Q Consensus 203 i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 282 (744)
|+.|-++ +.++.++.+ ...++.+.-+..++.++|+|.+ |.|||..... ++..+.--...
T Consensus 131 vK~wk~~-~~p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~-----------------Pv~smswG~Dt 189 (433)
T KOG0268|consen 131 VKQWKID-GPPLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDN-----------------PVSSMSWGADS 189 (433)
T ss_pred eeeeecc-CCcceeeec-cccccccccccccccccccCce--eeecccccCC-----------------ccceeecCCCc
Confidence 9999988 567777776 5667777777777888888764 9999987654 24445555566
Q ss_pred ceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCcc
Q 004581 283 VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPI 362 (744)
Q Consensus 283 v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (744)
|.++.++ |.. ..+|++++.|+.|.+||+++...+.
T Consensus 190 i~svkfN---------pvE-----------------------TsILas~~sDrsIvLyD~R~~~Pl~------------- 224 (433)
T KOG0268|consen 190 ISSVKFN---------PVE-----------------------TSILASCASDRSIVLYDLRQASPLK------------- 224 (433)
T ss_pred eeEEecC---------CCc-----------------------chheeeeccCCceEEEecccCCccc-------------
Confidence 6677665 222 1377888888888888877532110
Q ss_pred ccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceE
Q 004581 363 HLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPS 442 (744)
Q Consensus 363 ~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~ 442 (744)
.
T Consensus 225 -------------------------------------------------K------------------------------ 225 (433)
T KOG0268|consen 225 -------------------------------------------------K------------------------------ 225 (433)
T ss_pred -------------------------------------------------e------------------------------
Confidence 0
Q ss_pred EEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCC-ceeeeeccCcccccccCCCCCC
Q 004581 443 LFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSS-ELLHTFTPCREEHDREIQPSEP 521 (744)
Q Consensus 443 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~ 521 (744)
..+.- ..+.|+|+|.+--+++|++|..++.||+... .++..+.+ |.+
T Consensus 226 ------------------Vi~~m---RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d-----------hvs 273 (433)
T KOG0268|consen 226 ------------------VILTM---RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD-----------HVS 273 (433)
T ss_pred ------------------eeeec---cccceecCccccceeeccccccceehhhhhhcccchhhcc-----------cce
Confidence 00000 3456789997778888999999999998643 45666666 999
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCC
Q 004581 522 PITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 596 (744)
Q Consensus 522 ~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~ 596 (744)
.|.++.|||.|+-+++||.|.+|+||..+.+...-......-..|.++.||- |.+++++|++|+.|++|.....
T Consensus 274 AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 274 AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM-DSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec-cccEEEecCCCcceeeeecchh
Confidence 9999999999999999999999999999988765444322226899999999 9999999999999999987643
No 108
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.6e-27 Score=199.74 Aligned_cols=241 Identities=23% Similarity=0.280 Sum_probs=190.3
Q ss_pred CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEec--CCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCC
Q 004581 98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA--DGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGL 175 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~--dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 175 (744)
.+||+++.|++|+|+.+..+.....+.+|.||+++|..++|.. -|.+||+++.||.|.||.-++|+-.+....
T Consensus 24 krlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~----- 98 (299)
T KOG1332|consen 24 KRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEH----- 98 (299)
T ss_pred ceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhh-----
Confidence 6999999999999999997776667799999999999999976 799999999999999999887743322221
Q ss_pred CCCCceeEEEEEEecCC---eEEEEcCCCCEEEEeCCCc-c--eEEEeeccccceeEEEEcCC---C-----------CE
Q 004581 176 GSGPELCIWSLLSLRCG---TLVSADSTGSVQFWDSRHG-T--LLQAHSFHKGDVNALAAAPS---H-----------NR 235 (744)
Q Consensus 176 ~~~~~~~v~~~~~~~~~---~l~s~~~dg~i~vwd~~~~-~--~~~~~~~h~~~v~~l~~~~~---~-----------~~ 235 (744)
..|...|++++|.|.+ .|+++++||.|.|.+.+.. . .......|.-.|++++|.|. | +.
T Consensus 99 -~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~kr 177 (299)
T KOG1332|consen 99 -AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKR 177 (299)
T ss_pred -hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccce
Confidence 2699999999999987 7899999999999988753 2 22445689999999999986 4 56
Q ss_pred EEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccc
Q 004581 236 VFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDF 315 (744)
Q Consensus 236 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (744)
|++|+.|..|++|+..... |..-..+.+|++-|+.++++|..+
T Consensus 178 lvSgGcDn~VkiW~~~~~~---------------w~~e~~l~~H~dwVRDVAwaP~~g---------------------- 220 (299)
T KOG1332|consen 178 LVSGGCDNLVKIWKFDSDS---------------WKLERTLEGHKDWVRDVAWAPSVG---------------------- 220 (299)
T ss_pred eeccCCccceeeeecCCcc---------------hhhhhhhhhcchhhhhhhhccccC----------------------
Confidence 9999999999999998753 666677999999999999984322
Q ss_pred cccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCc
Q 004581 316 SYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNV 395 (744)
Q Consensus 316 ~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~ 395 (744)
.....|++++.||++.+|............
T Consensus 221 -------l~~s~iAS~SqDg~viIwt~~~e~e~wk~t------------------------------------------- 250 (299)
T KOG1332|consen 221 -------LPKSTIASCSQDGTVIIWTKDEEYEPWKKT------------------------------------------- 250 (299)
T ss_pred -------CCceeeEEecCCCcEEEEEecCccCccccc-------------------------------------------
Confidence 112389999999999999876321111000
Q ss_pred ccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCceEEEEeec
Q 004581 396 ESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKK 448 (744)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~~ 448 (744)
.+.. ....+..+.||..|.+|++ +.++.+.+|.-+.
T Consensus 251 -------------ll~~----f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 251 -------------LLEE----FPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred -------------cccc----CCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 1111 2256778889999999988 4888888887654
No 109
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.7e-27 Score=200.86 Aligned_cols=229 Identities=19% Similarity=0.239 Sum_probs=194.1
Q ss_pred CeeEEecCCCeEEEEEccC-CceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCC
Q 004581 6 GRLFSSSIDGSVSEWDLYD-LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS 84 (744)
Q Consensus 6 ~~l~~~~~d~~i~iwd~~~-~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (744)
..+++++.||++++||+.. .++++.++.|...|.++.+++..+
T Consensus 74 ~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r------------------------------------ 117 (311)
T KOG0277|consen 74 NQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRR------------------------------------ 117 (311)
T ss_pred ceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccc------------------------------------
Confidence 4588999999999999643 468889999999999999999774
Q ss_pred CcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEec-CCCEEEEEeCCCeEEEEEccCCc
Q 004581 85 DSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAKLGY 163 (744)
Q Consensus 85 ~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~-dg~~l~t~~~dg~i~vwd~~~~~ 163 (744)
+.+++++.|++|++|+...+..+ +++.+|...|...+||| ..+.+++++.|+++++||++...
T Consensus 118 -------------~~~ltsSWD~TiKLW~~~r~~Sv---~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g 181 (311)
T KOG0277|consen 118 -------------RIFLTSSWDGTIKLWDPNRPNSV---QTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG 181 (311)
T ss_pred -------------eeEEeeccCCceEeecCCCCcce---EeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC
Confidence 46777799999999999866666 88999999999999999 56789999999999999998754
Q ss_pred eEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCC-cceEEEeeccccceeEEEEcCCC-CEEEee
Q 004581 164 EIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRH-GTLLQAHSFHKGDVNALAAAPSH-NRVFST 239 (744)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~-~~l~~~ 239 (744)
....+. .|...+.++.|+.-+ .+++|+.|+.|+.||++. ..++..+.+|.-.|..+.|||.. ..|+++
T Consensus 182 k~~~i~--------ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSa 253 (311)
T KOG0277|consen 182 KFMSIE--------AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASA 253 (311)
T ss_pred ceeEEE--------eccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhc
Confidence 444466 588999999999765 799999999999999987 56788999999999999999964 678899
Q ss_pred cCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccc
Q 004581 240 GSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHK 319 (744)
Q Consensus 240 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (744)
+.|=++++||...+.. .+.....|+.-|..+.++.
T Consensus 254 sYDmT~riw~~~~~ds----------------~~e~~~~HtEFv~g~Dws~----------------------------- 288 (311)
T KOG0277|consen 254 SYDMTVRIWDPERQDS----------------AIETVDHHTEFVCGLDWSL----------------------------- 288 (311)
T ss_pred cccceEEecccccchh----------------hhhhhhccceEEecccccc-----------------------------
Confidence 9999999999986542 2445567888888888862
Q ss_pred cccCCCcEEEEecCCCeEEEEec
Q 004581 320 WAHLGVPMLISAGDDTKLFAYCA 342 (744)
Q Consensus 320 w~~~~~~~l~s~~~d~~i~~~~~ 342 (744)
-....+++++.|..+++|+.
T Consensus 289 ---~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 289 ---FDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ---ccCceeeecccccceeeecc
Confidence 12348999999999999984
No 110
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.5e-27 Score=226.68 Aligned_cols=196 Identities=21% Similarity=0.323 Sum_probs=167.1
Q ss_pred ccccccCCeEEEEecCCeEEEEEecCCCc---eeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCC--ceE
Q 004581 91 EQSVVEDRRVALACDDGCVRIYRITDSDE---LIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG--YEI 165 (744)
Q Consensus 91 ~~~~~~~~~la~~~~dg~i~iwd~~~~~~---~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~--~~~ 165 (744)
....+.+++|.+|+.||.|++|++..... -.+...++.|...|..++...+|+.|++++.|-+|++|+...+ -+.
T Consensus 31 q~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~ 110 (735)
T KOG0308|consen 31 QLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCM 110 (735)
T ss_pred cccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhH
Confidence 34456677999999999999999973322 2245788999999999999999999999999999999999887 466
Q ss_pred EEEEecCCCCCCCCceeEEEEEE-ecCC-eEEEEcCCCCEEEEeCCCcc--eEE--------Eee-ccccceeEEEEcCC
Q 004581 166 YRITVGLGGLGSGPELCIWSLLS-LRCG-TLVSADSTGSVQFWDSRHGT--LLQ--------AHS-FHKGDVNALAAAPS 232 (744)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~-~~~~-~l~s~~~dg~i~vwd~~~~~--~~~--------~~~-~h~~~v~~l~~~~~ 232 (744)
..+. .|...|.|+++ -++. .+++|+-|+.|.+||+.++. .+. .+. ++...|.+++-++.
T Consensus 111 stir--------~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t 182 (735)
T KOG0308|consen 111 STIR--------THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT 182 (735)
T ss_pred hhhh--------cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc
Confidence 6666 69999999999 5666 89999999999999999872 232 233 78889999999999
Q ss_pred CCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCC
Q 004581 233 HNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKP 312 (744)
Q Consensus 233 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (744)
|..|++|+..+.+++||.++.. .+..+++|+..|+.+-++ .||.
T Consensus 183 ~t~ivsGgtek~lr~wDprt~~-----------------kimkLrGHTdNVr~ll~~---------dDGt---------- 226 (735)
T KOG0308|consen 183 GTIIVSGGTEKDLRLWDPRTCK-----------------KIMKLRGHTDNVRVLLVN---------DDGT---------- 226 (735)
T ss_pred ceEEEecCcccceEEecccccc-----------------ceeeeeccccceEEEEEc---------CCCC----------
Confidence 9999999999999999999876 367788999999999997 6665
Q ss_pred ccccccccccCCCcEEEEecCCCeEEEEecCc
Q 004581 313 IDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 344 (744)
Q Consensus 313 ~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~ 344 (744)
.+++++.||+|++||+..
T Consensus 227 --------------~~ls~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 227 --------------RLLSASSDGTIRLWDLGQ 244 (735)
T ss_pred --------------eEeecCCCceEEeeeccc
Confidence 999999999999999964
No 111
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.1e-25 Score=208.16 Aligned_cols=190 Identities=18% Similarity=0.193 Sum_probs=174.8
Q ss_pred CeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCC
Q 004581 6 GRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD 85 (744)
Q Consensus 6 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (744)
..+++||.|.++.++|..+.+.+.+|+||...|..+.|+|+.
T Consensus 232 ~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~-------------------------------------- 273 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDL-------------------------------------- 273 (506)
T ss_pred CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccch--------------------------------------
Confidence 568999999999999999999999999999999999999998
Q ss_pred cccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceE
Q 004581 86 SDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 165 (744)
Q Consensus 86 ~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~ 165 (744)
..+++++.|..|+||........ .....|+++|+.+..+|.|.||++++.|++....|+++|..+
T Consensus 274 ------------~~v~~aSad~~i~vws~~~~s~~---~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~l 338 (506)
T KOG0289|consen 274 ------------DTVITASADEIIRVWSVPLSSEP---TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQL 338 (506)
T ss_pred ------------hheeecCCcceEEeeccccccCc---cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEE
Confidence 58899999999999999755554 677899999999999999999999999999999999999998
Q ss_pred EEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCe
Q 004581 166 YRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQ 244 (744)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~ 244 (744)
...... ...-.+++.+|+||| .|.+|..||.|+|||+.++..+..|.+|.++|..++|+.+|-+|++++.|+.
T Consensus 339 t~vs~~------~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~ 412 (506)
T KOG0289|consen 339 TVVSDE------TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS 412 (506)
T ss_pred EEEeec------cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe
Confidence 877631 234568999999999 7889999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcccCc
Q 004581 245 VILYKASCES 254 (744)
Q Consensus 245 i~iw~~~~~~ 254 (744)
|++||++...
T Consensus 413 V~lwDLRKl~ 422 (506)
T KOG0289|consen 413 VKLWDLRKLK 422 (506)
T ss_pred EEEEEehhhc
Confidence 9999998754
No 112
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.7e-24 Score=180.51 Aligned_cols=298 Identities=13% Similarity=0.152 Sum_probs=220.7
Q ss_pred ccCcEEEEEEecCCCEEEEEeCCCeEEEEEc------cCCceEEEEEec-CCCCCCCCceeEEEEEEecCC-eEEEEcCC
Q 004581 129 VSGRVLSVTWSADGNMLYSGSSDGYIRSWDA------KLGYEIYRITVG-LGGLGSGPELCIWSLLSLRCG-TLVSADST 200 (744)
Q Consensus 129 h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~------~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~-~l~s~~~d 200 (744)
....|.+++|+|.|.+.+.|+...+++|-.. +.+......... .-...+.|.+.|+|.+|+|+| +|++|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 4568999999999999999999999888643 222111000000 000123688999999999999 89999999
Q ss_pred CCEEEEeCCCcce-----EEEeeccccceeEEEEcCC----CCEEEeecC-CCeEEEEEcccCcCCCCCCCCcccccceE
Q 004581 201 GSVQFWDSRHGTL-----LQAHSFHKGDVNALAAAPS----HNRVFSTGS-DGQVILYKASCESIGPNDGLSSSEVIKKW 270 (744)
Q Consensus 201 g~i~vwd~~~~~~-----~~~~~~h~~~v~~l~~~~~----~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 270 (744)
.+|++.-.+..++ -..+..|.+.|..++|..+ +..|++++. |..|++-|...++
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~---------------- 174 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ---------------- 174 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC----------------
Confidence 9999976654322 2457789999999999754 456666544 6677777776665
Q ss_pred EEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCC
Q 004581 271 IYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSP 350 (744)
Q Consensus 271 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~ 350 (744)
....+.+|++.|.++--. ++-.+++|+.|.+|++||++-..
T Consensus 175 -~~~a~sghtghilalysw----------------------------------n~~m~~sgsqdktirfwdlrv~~---- 215 (350)
T KOG0641|consen 175 -GFHALSGHTGHILALYSW----------------------------------NGAMFASGSQDKTIRFWDLRVNS---- 215 (350)
T ss_pred -cceeecCCcccEEEEEEe----------------------------------cCcEEEccCCCceEEEEeeeccc----
Confidence 266788999999887542 22389999999999999986311
Q ss_pred cccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC
Q 004581 351 HEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG 430 (744)
Q Consensus 351 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 430 (744)
++..+... |.
T Consensus 216 ----------------------------------------------------------~v~~l~~~---------~~--- 225 (350)
T KOG0641|consen 216 ----------------------------------------------------------CVNTLDND---------FH--- 225 (350)
T ss_pred ----------------------------------------------------------eeeeccCc---------cc---
Confidence 00000000 00
Q ss_pred CEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcc
Q 004581 431 MLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCRE 510 (744)
Q Consensus 431 ~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 510 (744)
+++.. ...|.+++..|.|++|++|-.|....+||+..++.++.|.+
T Consensus 226 -------------------~~gle------------ssavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~p--- 271 (350)
T KOG0641|consen 226 -------------------DGGLE------------SSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHP--- 271 (350)
T ss_pred -------------------CCCcc------------cceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCC---
Confidence 01111 12688899999999999999999999999999999999998
Q ss_pred cccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCc---ceEEEEecCCCCceeEEeecCCCCCeEEEEecCCe
Q 004581 511 EHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ---RQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQ 587 (744)
Q Consensus 511 ~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~ 587 (744)
|...|.++.|||...||.+++.|..|++-|++.. ++...+...|...+..+.|+| ..--+++.+.|.+
T Consensus 272 --------hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~-~d~sfisssadkt 342 (350)
T KOG0641|consen 272 --------HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHP-QDFSFISSSADKT 342 (350)
T ss_pred --------CccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecC-ccceeeeccCcce
Confidence 9999999999999999999999999999999854 222333345777888889999 5566788899999
Q ss_pred EEEEEcC
Q 004581 588 VYVFDVE 594 (744)
Q Consensus 588 v~vwd~~ 594 (744)
+.+|-+.
T Consensus 343 ~tlwa~~ 349 (350)
T KOG0641|consen 343 ATLWALN 349 (350)
T ss_pred EEEeccC
Confidence 9999764
No 113
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1.2e-24 Score=223.76 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=129.9
Q ss_pred EecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecC-CCEEEEEeCCCeEEEEEccCCce--------EEEEEecCC
Q 004581 103 ACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSAD-GNMLYSGSSDGYIRSWDAKLGYE--------IYRITVGLG 173 (744)
Q Consensus 103 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~d-g~~l~t~~~dg~i~vwd~~~~~~--------~~~~~~~~~ 173 (744)
|+.++.|++|+...... ...+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++.. +..+.
T Consensus 50 GG~~gvI~L~~~~r~~~---v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~---- 122 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPP---VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK---- 122 (568)
T ss_pred CCceeEEEeeecCCCce---EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee----
Confidence 55678899999864333 3788999999999999997 78999999999999999976532 22333
Q ss_pred CCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcc
Q 004581 174 GLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKAS 251 (744)
Q Consensus 174 ~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~ 251 (744)
+|...|.+++|+|++ .|++++.|++|++||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|++||++
T Consensus 123 ----gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~R 197 (568)
T PTZ00420 123 ----GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPR 197 (568)
T ss_pred ----cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECC
Confidence 688999999999988 45789999999999999998887776 56789999999999999999999999999998
Q ss_pred cCcCCCCCCCCcccccceEEEEeeeeeccCcceeeee
Q 004581 252 CESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTV 288 (744)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 288 (744)
++. .+..+.+|.+.+.+..+
T Consensus 198 sg~-----------------~i~tl~gH~g~~~s~~v 217 (568)
T PTZ00420 198 KQE-----------------IASSFHIHDGGKNTKNI 217 (568)
T ss_pred CCc-----------------EEEEEecccCCceeEEE
Confidence 866 25667788876654443
No 114
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=1.3e-25 Score=198.38 Aligned_cols=297 Identities=14% Similarity=0.156 Sum_probs=224.7
Q ss_pred EEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCC-CCCCcccccceEEEEeeeeeccCcceeeeeeccC
Q 004581 214 LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPN-DGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPI 292 (744)
Q Consensus 214 ~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 292 (744)
...+..|.+++.+.+|++||.++++|+.|-.|+++|++....... ..+........--.++++..|..+|.++.|.
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH--- 181 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH--- 181 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec---
Confidence 355778999999999999999999999999999999984321111 0111112222334578889999999999995
Q ss_pred CCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecC
Q 004581 293 SREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSH 372 (744)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 372 (744)
|....|++++.|++|+++|.........++.
T Consensus 182 ------------------------------Pre~ILiS~srD~tvKlFDfsK~saKrA~K~------------------- 212 (430)
T KOG0640|consen 182 ------------------------------PRETILISGSRDNTVKLFDFSKTSAKRAFKV------------------- 212 (430)
T ss_pred ------------------------------chhheEEeccCCCeEEEEecccHHHHHHHHH-------------------
Confidence 3444999999999999999875321111110
Q ss_pred CeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCC
Q 004581 373 TSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKV 451 (744)
Q Consensus 373 ~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~ 451 (744)
.....++.++.|+|.|.+|++| ....+++|++++
T Consensus 213 ------------------------------------------~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T--- 247 (430)
T KOG0640|consen 213 ------------------------------------------FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT--- 247 (430)
T ss_pred ------------------------------------------hhccceeeeEeecCCCceEEEecCCCceeEEeccc---
Confidence 0112678999999999999997 556889999976
Q ss_pred CCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCC
Q 004581 452 GQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSD 531 (744)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd 531 (744)
..+. +....-.+|...|+++.+|+.+++.++++.||.|++||--+++++.++.... ....|++..|+.|
T Consensus 248 ~Qcf--vsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH---------~gsevcSa~Ftkn 316 (430)
T KOG0640|consen 248 YQCF--VSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAH---------GGSEVCSAVFTKN 316 (430)
T ss_pred eeEe--eecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhc---------CCceeeeEEEccC
Confidence 3333 2234556777899999999999999999999999999999999999987531 2567999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCcceEEEEecCCC----CceeEEeecCCCCCeEEEEec-CCeEEEEEcCCCcccccccccc
Q 004581 532 GQWLAAVNCFGDVYIFNLEIQRQHWFISRLEG----ASVTAAGFPPQNNNVLIITTS-SNQVYVFDVEAKQLGEWSMQHT 606 (744)
Q Consensus 532 g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~----~~v~~l~~sp~~~~~l~~~~~-d~~v~vwd~~~~~~~~ws~~~~ 606 (744)
|+|+.+.+.|..+++|.+.+++.+....+.-. ..-+...|+. ..++++.-.+ .+.+.-||..+..-
T Consensus 317 ~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNh-tEdyVl~pDEas~slcsWdaRtadr-------- 387 (430)
T KOG0640|consen 317 GKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNH-TEDYVLFPDEASNSLCSWDARTADR-------- 387 (430)
T ss_pred CeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcC-ccceEEccccccCceeeccccchhh--------
Confidence 99999999999999999999999877755311 1224556887 7777776654 46889999887752
Q ss_pred CCcccccccCCCceEEEEeCCCC
Q 004581 607 FVLPRRYQEFPGEVIGLSFSPSP 629 (744)
Q Consensus 607 ~~~~~~~~~~~~~v~~i~fspdg 629 (744)
...--.+|++.+.-|.-||.+
T Consensus 388 --~~l~slgHn~a~R~i~HSP~~ 408 (430)
T KOG0640|consen 388 --VALLSLGHNGAVRWIVHSPVE 408 (430)
T ss_pred --hhhcccCCCCCceEEEeCCCC
Confidence 112245799999999999973
No 115
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4.7e-25 Score=194.54 Aligned_cols=281 Identities=15% Similarity=0.183 Sum_probs=207.3
Q ss_pred CCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCC-cceE-EEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccC
Q 004581 178 GPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRH-GTLL-QAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE 253 (744)
Q Consensus 178 ~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~-~~~~-~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~ 253 (744)
..+..|.+++|+|.. .+++++.||+||+|+++. |..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 567889999999944 677999999999999986 4443 445678999999999999999999999999999999998
Q ss_pred cCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecC
Q 004581 254 SIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD 333 (744)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~ 333 (744)
+ +..+..|..+|+++.|-. ....+.|++|+.
T Consensus 105 Q------------------~~~v~~Hd~pvkt~~wv~-------------------------------~~~~~cl~TGSW 135 (347)
T KOG0647|consen 105 Q------------------VSQVAAHDAPVKTCHWVP-------------------------------GMNYQCLVTGSW 135 (347)
T ss_pred C------------------eeeeeecccceeEEEEec-------------------------------CCCcceeEeccc
Confidence 7 678889999999999852 112348999999
Q ss_pred CCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEE
Q 004581 334 DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQV 413 (744)
Q Consensus 334 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (744)
|.+|++||++..... .++
T Consensus 136 DKTlKfWD~R~~~pv--------------------------------------------------------------~t~ 153 (347)
T KOG0647|consen 136 DKTLKFWDTRSSNPV--------------------------------------------------------------ATL 153 (347)
T ss_pred ccceeecccCCCCee--------------------------------------------------------------eee
Confidence 999999999853311 111
Q ss_pred EecCCCCeEEEEEcCCCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEE
Q 004581 414 KSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIY 492 (744)
Q Consensus 414 ~~~~~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~ 492 (744)
..+ +++.++ +--..++++ ..+..|.+|+++++....+. + ... ..-.+++++..+|....|.|+-+|.+.
T Consensus 154 ~LP--eRvYa~--Dv~~pm~vVata~r~i~vynL~n~~te~k~--~-~Sp---Lk~Q~R~va~f~d~~~~alGsiEGrv~ 223 (347)
T KOG0647|consen 154 QLP--ERVYAA--DVLYPMAVVATAERHIAVYNLENPPTEFKR--I-ESP---LKWQTRCVACFQDKDGFALGSIEGRVA 223 (347)
T ss_pred ecc--ceeeeh--hccCceeEEEecCCcEEEEEcCCCcchhhh--h-cCc---ccceeeEEEEEecCCceEeeeecceEE
Confidence 111 112211 111233444 47889999999762222111 1 111 122688999989999889999999999
Q ss_pred EEEccCC--ceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEe
Q 004581 493 VVDVSSS--ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAG 570 (744)
Q Consensus 493 v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~ 570 (744)
|..+..+ +.-.+|+.|+.... ....--.|++++|+|.-..|++++.||+..+||-+....+...+. |..+|++.+
T Consensus 224 iq~id~~~~~~nFtFkCHR~~~~--~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~-~~qpItcc~ 300 (347)
T KOG0647|consen 224 IQYIDDPNPKDNFTFKCHRSTNS--VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSET-HPQPITCCS 300 (347)
T ss_pred EEecCCCCccCceeEEEeccCCC--CCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCc-CCCccceeE
Confidence 9999876 44456666432110 011123578899999999999999999999999887766655554 557999999
Q ss_pred ecCCCCCeEEEEe
Q 004581 571 FPPQNNNVLIITT 583 (744)
Q Consensus 571 ~sp~~~~~l~~~~ 583 (744)
|+. +|.++|.+.
T Consensus 301 fn~-~G~ifaYA~ 312 (347)
T KOG0647|consen 301 FNR-NGSIFAYAL 312 (347)
T ss_pred ecC-CCCEEEEEe
Confidence 999 999888774
No 116
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=3.4e-26 Score=214.99 Aligned_cols=268 Identities=16% Similarity=0.228 Sum_probs=206.4
Q ss_pred CeEEEEecCCeEEEEEecCCCceeEeeccc--CccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCC
Q 004581 98 RRVALACDDGCVRIYRITDSDELIYHRSLP--RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGL 175 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 175 (744)
+++.+|+. |.|+|||+...+.......|. .-...|.++..+|||+.|++|+.-.++.|||+............
T Consensus 432 rhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaelt---- 506 (705)
T KOG0639|consen 432 RHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELT---- 506 (705)
T ss_pred ceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcC----
Confidence 46777666 899999997443322223333 24568999999999999999999999999999765443222211
Q ss_pred CCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCc
Q 004581 176 GSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 254 (744)
Q Consensus 176 ~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~ 254 (744)
......++++.+||. ..++++.||.|.|||+.+...++.|++|+..+.||.+++||..|-+|+.|.+|+.||++.+.
T Consensus 507 --ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregr 584 (705)
T KOG0639|consen 507 --SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGR 584 (705)
T ss_pred --CcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhh
Confidence 233456789999999 77889999999999999999999999999999999999999999999999999999998865
Q ss_pred CCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCC
Q 004581 255 IGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD 334 (744)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d 334 (744)
. +..|..
T Consensus 585 q--------------------lqqhdF----------------------------------------------------- 591 (705)
T KOG0639|consen 585 Q--------------------LQQHDF----------------------------------------------------- 591 (705)
T ss_pred h--------------------hhhhhh-----------------------------------------------------
Confidence 2 111110
Q ss_pred CeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEE
Q 004581 335 TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK 414 (744)
Q Consensus 335 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (744)
T Consensus 592 -------------------------------------------------------------------------------- 591 (705)
T KOG0639|consen 592 -------------------------------------------------------------------------------- 591 (705)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEE
Q 004581 415 SKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYV 493 (744)
Q Consensus 415 ~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v 493 (744)
...|.++..+|++.+||+| ..+.+.+..... .++..+..|...|.++.|.+.|+++++.+.|+-+..
T Consensus 592 ---~SQIfSLg~cP~~dWlavGMens~vevlh~sk---------p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLna 659 (705)
T KOG0639|consen 592 ---SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK---------PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA 659 (705)
T ss_pred ---hhhheecccCCCccceeeecccCcEEEEecCC---------ccceeecccccEEEEEEecccCceeeecCchhhhhh
Confidence 0234444456666666666 344444444332 112445566778999999999999999999999999
Q ss_pred EEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEEC
Q 004581 494 VDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL 549 (744)
Q Consensus 494 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~ 549 (744)
|...-|..+.+.+. .+.|.++.+|-|.+|+++|+.|....||.+
T Consensus 660 wrtPyGasiFqskE------------~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 660 WRTPYGASIFQSKE------------SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccCccccceeeccc------------cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 99988887777664 788999999999999999999998888865
No 117
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=9.2e-26 Score=221.53 Aligned_cols=232 Identities=20% Similarity=0.308 Sum_probs=206.8
Q ss_pred CCCCCCeeEEecCCCeEEEEEccCCceeEEeec-cCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCcc
Q 004581 1 MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQS-IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSE 79 (744)
Q Consensus 1 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (744)
|++.|..|++|..+|.|.|||.++.+.+..+.+ |...|-|++|+.
T Consensus 225 ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~---------------------------------- 270 (484)
T KOG0305|consen 225 WSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNS---------------------------------- 270 (484)
T ss_pred ECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccC----------------------------------
Confidence 578899999999999999999999999999999 999999999994
Q ss_pred CCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 004581 80 SENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDA 159 (744)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~ 159 (744)
..+.+|+.|+.|..+|+...+... ..+.+|...|..++|++|+.+||+|+.|+.+.|||.
T Consensus 271 ------------------~~lssGsr~~~I~~~dvR~~~~~~--~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~ 330 (484)
T KOG0305|consen 271 ------------------SVLSSGSRDGKILNHDVRISQHVV--STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDG 330 (484)
T ss_pred ------------------ceEEEecCCCcEEEEEEecchhhh--hhhhcccceeeeeEECCCCCeeccCCCccceEeccC
Confidence 379999999999999998666653 358899999999999999999999999999999999
Q ss_pred cCCceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEc--CCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCE
Q 004581 160 KLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSAD--STGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNR 235 (744)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~--~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 235 (744)
...+.+..+. .|...|.+++|+|-. .|++|+ .|+.|++||..+|+.+..+.. .+.|.+|.|++..+.
T Consensus 331 ~~~~p~~~~~--------~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kE 401 (484)
T KOG0305|consen 331 LSPEPKFTFT--------EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKE 401 (484)
T ss_pred CCccccEEEe--------ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCE
Confidence 8888888887 799999999999955 788865 599999999999999988875 678999999999877
Q ss_pred EEe--ecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCc
Q 004581 236 VFS--TGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPI 313 (744)
Q Consensus 236 l~~--~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (744)
|++ |..++.|.+|+..+.. .+..+.+|...|..++++ ||+.
T Consensus 402 i~sthG~s~n~i~lw~~ps~~-----------------~~~~l~gH~~RVl~la~S---------Pdg~----------- 444 (484)
T KOG0305|consen 402 LLSTHGYSENQITLWKYPSMK-----------------LVAELLGHTSRVLYLALS---------PDGE----------- 444 (484)
T ss_pred EEEecCCCCCcEEEEeccccc-----------------eeeeecCCcceeEEEEEC---------CCCC-----------
Confidence 776 4558899999998855 478889999999999998 7766
Q ss_pred cccccccccCCCcEEEEecCCCeEEEEecCcc
Q 004581 314 DFSYHKWAHLGVPMLISAGDDTKLFAYCANEF 345 (744)
Q Consensus 314 ~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~ 345 (744)
.+++|+.|.++++|++-..
T Consensus 445 -------------~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 445 -------------TIVTGAADETLRFWNLFDE 463 (484)
T ss_pred -------------EEEEecccCcEEeccccCC
Confidence 9999999999999998653
No 118
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.6e-25 Score=198.33 Aligned_cols=282 Identities=15% Similarity=0.124 Sum_probs=221.5
Q ss_pred eeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCc---cccCCC----CCC-------
Q 004581 7 RLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNG---YLNDKS----NDS------- 72 (744)
Q Consensus 7 ~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~---~~~~~~----~~~------- 72 (744)
.+.+++.|.+.+||.+++|+++.++.||.+.|+|++|++.+..++++++++...... .|..-. +..
T Consensus 162 i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e 241 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEE 241 (481)
T ss_pred ceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhh
Confidence 478899999999999999999999999999999999999999999887765432222 121111 000
Q ss_pred ---------------CCCcCcc---CCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEE
Q 004581 73 ---------------DDHETSE---SENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVL 134 (744)
Q Consensus 73 ---------------~~~~~~~---~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~ 134 (744)
....++. ......+....+.....++.+++++.|.+-.+||+++++.+ ..|.||....+
T Consensus 242 ~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v---~~LtGHd~ELt 318 (481)
T KOG0300|consen 242 HSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVV---NILTGHDSELT 318 (481)
T ss_pred cccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCcee---ccccCcchhcc
Confidence 0000000 11112334455566678999999999999999999998887 89999999999
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEEccCC-ceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCc-c
Q 004581 135 SVTWSADGNMLYSGSSDGYIRSWDAKLG-YEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHG-T 212 (744)
Q Consensus 135 ~~~~s~dg~~l~t~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~ 212 (744)
.++-+|..+++++++.|.+.++||++.. ..+..|. +|...|+++.|..+..+++|+.|.+|++||+++. .
T Consensus 319 HcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ--------GHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRs 390 (481)
T KOG0300|consen 319 HCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ--------GHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRS 390 (481)
T ss_pred ccccCCcceEEEEeccCceeEeccchhhcceeeeec--------ccccceeEEEEecCCceeecCCCceEEEeeeccccC
Confidence 9999999999999999999999999743 2234444 8999999999999999999999999999999874 5
Q ss_pred eEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccC
Q 004581 213 LLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPI 292 (744)
Q Consensus 213 ~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 292 (744)
++.+++. ..+++.++.+..+..|+.--.+..|++||+....+.... -...++|..-|.|.+|.
T Consensus 391 plATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlP-------------rtsRqgHrRMV~c~AW~--- 453 (481)
T KOG0300|consen 391 PLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLP-------------RTSRQGHRRMVTCCAWL--- 453 (481)
T ss_pred cceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCccccCC-------------cccccccceeeeeeecc---
Confidence 6777775 678999999988888888888999999999987753221 23567899999999995
Q ss_pred CCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCc
Q 004581 293 SREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 344 (744)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~ 344 (744)
+.. | ...|++++.|..+.-|.+..
T Consensus 454 -------eeh--------------------p-~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 454 -------EEH--------------------P-ACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred -------ccC--------------------c-ccccccccccceeeeeEecc
Confidence 111 1 12689999999999998865
No 119
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6.2e-24 Score=179.18 Aligned_cols=236 Identities=19% Similarity=0.241 Sum_probs=191.2
Q ss_pred CCCCCCeeEEecCCCeEEEEEccCC----------c----ee-EEeeccCcceeEEeeccCCCccccccccccccCCccc
Q 004581 1 MGLPGGRLFSSSIDGSVSEWDLYDL----------K----QK-IVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYL 65 (744)
Q Consensus 1 ~~~~~~~l~~~~~d~~i~iwd~~~~----------~----~~-~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~ 65 (744)
+.|.|+..++|+...+++|--.... + .+ ..-+.|.+.|.|.+|||+|
T Consensus 40 fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g------------------ 101 (350)
T KOG0641|consen 40 FHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG------------------ 101 (350)
T ss_pred ecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc------------------
Confidence 4678899999999999998754321 1 11 1234588999999999999
Q ss_pred cCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecC--CCceeEeecccCccCcEEEEEEecC--
Q 004581 66 NDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITD--SDELIYHRSLPRVSGRVLSVTWSAD-- 141 (744)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~--~~~~~~~~~~~~h~~~V~~~~~s~d-- 141 (744)
.+||+|+.|.+|++.-+.. ....-....|.-|.+.|..++|-.+
T Consensus 102 --------------------------------eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~ 149 (350)
T KOG0641|consen 102 --------------------------------ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPE 149 (350)
T ss_pred --------------------------------CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCC
Confidence 6999999999999987652 2222233567789999999999643
Q ss_pred --CCEEEEEeC-CCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEee
Q 004581 142 --GNMLYSGSS-DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHS 218 (744)
Q Consensus 142 --g~~l~t~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 218 (744)
|..|++++. |..|.+-|..+|+..+.+. +|.+.|.++---..-.+++|+.|.+|++||++-..++.++.
T Consensus 150 s~~~il~s~gagdc~iy~tdc~~g~~~~a~s--------ghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~ 221 (350)
T KOG0641|consen 150 SGGAILASAGAGDCKIYITDCGRGQGFHALS--------GHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLD 221 (350)
T ss_pred cCceEEEecCCCcceEEEeecCCCCcceeec--------CCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeecc
Confidence 567888765 7788999999999998887 79998988754433399999999999999999888887764
Q ss_pred c--c-----ccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeecc
Q 004581 219 F--H-----KGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVP 291 (744)
Q Consensus 219 ~--h-----~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 291 (744)
. | ...|.+++..|.|++|++|-.|....+||++.+. .++.+..|+.+|+++.|+
T Consensus 222 ~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r-----------------~iq~f~phsadir~vrfs-- 282 (350)
T KOG0641|consen 222 NDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR-----------------MIQRFHPHSADIRCVRFS-- 282 (350)
T ss_pred CcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc-----------------eeeeeCCCccceeEEEeC--
Confidence 2 2 3579999999999999999999999999999987 478889999999999997
Q ss_pred CCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCc
Q 004581 292 ISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 344 (744)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~ 344 (744)
|.. .++++++.|..|++-|+..
T Consensus 283 -------p~a------------------------~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 283 -------PGA------------------------HYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred -------CCc------------------------eEEEEecccceEEEeeccc
Confidence 333 3999999999999998864
No 120
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.8e-25 Score=198.36 Aligned_cols=235 Identities=17% Similarity=0.229 Sum_probs=195.0
Q ss_pred CCCCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCC
Q 004581 2 GLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESE 81 (744)
Q Consensus 2 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (744)
+.++.++|+||.|-+|.|||+.+.+++..+-.|.+.|+++.|.+.-..
T Consensus 50 AVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~-------------------------------- 97 (362)
T KOG0294|consen 50 AVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSK-------------------------------- 97 (362)
T ss_pred EecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcch--------------------------------
Confidence 346778999999999999999999999999999999999999997621
Q ss_pred CCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 004581 82 NDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL 161 (744)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~ 161 (744)
..|.+|++||.|.+|+...-+.+ ..+++|.+.|+.++.+|.|++-++.+.|+.++.||+-+
T Consensus 98 ----------------shLlS~sdDG~i~iw~~~~W~~~---~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 98 ----------------SHLLSGSDDGHIIIWRVGSWELL---KSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR 158 (362)
T ss_pred ----------------hheeeecCCCcEEEEEcCCeEEe---eeecccccccceeEecCCCceEEEEcCCceeeeehhhc
Confidence 27999999999999998755444 99999999999999999999999999999999999999
Q ss_pred CceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeec
Q 004581 162 GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTG 240 (744)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~ 240 (744)
|+.-..+.. .+. -..+.|+|.| +++.+..+ .|-+|.+++......+.. ...+.|+.|.. +..|++|+
T Consensus 159 Gr~a~v~~L-------~~~--at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l~~~~l~-~~~L~vG~ 226 (362)
T KOG0294|consen 159 GRVAFVLNL-------KNK--ATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN-PKRILCATFLD-GSELLVGG 226 (362)
T ss_pred Cccceeecc-------CCc--ceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc-cccceeeeecC-CceEEEec
Confidence 998777764 232 3339999999 67766654 599999987766655554 36688888874 56899999
Q ss_pred CCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcccccccc
Q 004581 241 SDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKW 320 (744)
Q Consensus 241 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 320 (744)
.|+.|.+||.+... +...+.+|...|.++.+..
T Consensus 227 d~~~i~~~D~ds~~-----------------~~~~~~AH~~RVK~i~~~~------------------------------ 259 (362)
T KOG0294|consen 227 DNEWISLKDTDSDT-----------------PLTEFLAHENRVKDIASYT------------------------------ 259 (362)
T ss_pred CCceEEEeccCCCc-----------------cceeeecchhheeeeEEEe------------------------------
Confidence 99999999998755 3678899999999998631
Q ss_pred ccCCCcEEEEecCCCeEEEEecCccCC
Q 004581 321 AHLGVPMLISAGDDTKLFAYCANEFTK 347 (744)
Q Consensus 321 ~~~~~~~l~s~~~d~~i~~~~~~~~~~ 347 (744)
.+...+|++++.||.|++||++....
T Consensus 260 -~~~~~~lvTaSSDG~I~vWd~~~~~k 285 (362)
T KOG0294|consen 260 -NPEHEYLVTASSDGFIKVWDIDMETK 285 (362)
T ss_pred -cCCceEEEEeccCceEEEEEcccccc
Confidence 22334999999999999999987543
No 121
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.94 E-value=3.2e-24 Score=207.43 Aligned_cols=160 Identities=11% Similarity=0.162 Sum_probs=123.5
Q ss_pred EcCCCCEEEE---EcCCceEEEEeecCCCCCceEEeeeccCCccc--ccccEEEEee-CCCEEEEEeCCCcEEEEEccCC
Q 004581 426 ISNSGMLFAY---SDHVKPSLFELKKGKVGQGEWIINKRQLPRKL--QFAHSMIFSY-DSSQLIIAGHDRRIYVVDVSSS 499 (744)
Q Consensus 426 ~s~~g~~la~---~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~i~~sp-d~~~l~~~~~dg~i~v~d~~~~ 499 (744)
|..+.+.+|+ +..|.|-||+++... ++ ....+++.. ..|+.+.|.| |..+||+++.||.|++|.+..+
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PG---rL---PDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~ 660 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPG---RL---PDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTAN 660 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCC---CC---CcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccC
Confidence 4556677877 578899999998621 11 112233222 2688999998 8899999999999999999654
Q ss_pred ceeeeeccCcccccccCCCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCe
Q 004581 500 ELLHTFTPCREEHDREIQPSEPPITKMFTSS-DGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNV 578 (744)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~ 578 (744)
-+-.... ..+..+..|...|+++.|+| -...||++++|.+|++||+.+++....+.+ |.+.|..++||| ||+.
T Consensus 661 gl~e~~~----tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~g-HtdqIf~~AWSp-dGr~ 734 (1012)
T KOG1445|consen 661 GLPENEM----TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVG-HTDQIFGIAWSP-DGRR 734 (1012)
T ss_pred CCCcccC----CcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheecc-CcCceeEEEECC-CCcc
Confidence 2211111 11122333899999999999 456899999999999999999998888865 778999999999 9999
Q ss_pred EEEEecCCeEEEEEcCCCc
Q 004581 579 LIITTSSNQVYVFDVEAKQ 597 (744)
Q Consensus 579 l~~~~~d~~v~vwd~~~~~ 597 (744)
+|+.+.||+|++|+-..++
T Consensus 735 ~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 735 IATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred eeeeecCceEEEeCCCCCC
Confidence 9999999999999998875
No 122
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=2.6e-24 Score=188.91 Aligned_cols=290 Identities=15% Similarity=0.196 Sum_probs=217.5
Q ss_pred CCeEEEEecCCeEEEEEecCCCc-----eeE-------eecccCccCcEEEEEEec-CCCEEEEEeCCCeEEEEEccCCc
Q 004581 97 DRRVALACDDGCVRIYRITDSDE-----LIY-------HRSLPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAKLGY 163 (744)
Q Consensus 97 ~~~la~~~~dg~i~iwd~~~~~~-----~~~-------~~~~~~h~~~V~~~~~s~-dg~~l~t~~~dg~i~vwd~~~~~ 163 (744)
++++++|+.||.|.+||++.... +.. ...-.+|+-.|.++.|-| |..++.+++.|.+++|||..+.+
T Consensus 56 grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ 135 (397)
T KOG4283|consen 56 GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ 135 (397)
T ss_pred ceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccce
Confidence 37999999999999999984321 111 112246888999999998 44577888899999999999999
Q ss_pred eEEEEEecCCCCCCCCceeEEEEEEecCC----eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCE-EEe
Q 004581 164 EIYRITVGLGGLGSGPELCIWSLLSLRCG----TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNR-VFS 238 (744)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~-l~~ 238 (744)
....++ .+..|++-+++|-. ++++|..+-.|++-|+.+|..-.++.+|.+.|.++.|+|...+ |++
T Consensus 136 ~a~~F~---------me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLat 206 (397)
T KOG4283|consen 136 EAVDFK---------MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLAT 206 (397)
T ss_pred eeEEee---------cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEe
Confidence 888886 67889998998854 6888888999999999999999999999999999999998765 567
Q ss_pred ecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcccccc
Q 004581 239 TGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYH 318 (744)
Q Consensus 239 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (744)
|+.||.|++||++...
T Consensus 207 gsaDg~irlWDiRras---------------------------------------------------------------- 222 (397)
T KOG4283|consen 207 GSADGAIRLWDIRRAS---------------------------------------------------------------- 222 (397)
T ss_pred cCCCceEEEEEeeccc----------------------------------------------------------------
Confidence 8999999999987642
Q ss_pred ccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccC
Q 004581 319 KWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESR 398 (744)
Q Consensus 319 ~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~ 398 (744)
|.+++.|..+.+..
T Consensus 223 ----------------gcf~~lD~hn~k~~-------------------------------------------------- 236 (397)
T KOG4283|consen 223 ----------------GCFRVLDQHNTKRP-------------------------------------------------- 236 (397)
T ss_pred ----------------ceeEEeecccCccC--------------------------------------------------
Confidence 11111222111000
Q ss_pred CCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEee
Q 004581 399 SSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY 477 (744)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp 477 (744)
...+....|.+.+..+||+.+|.++++ +.+..+++|+...+....+.+-.....-..+. .+. +. +.
T Consensus 237 ----------p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~-~~~-~~-~~ 303 (397)
T KOG4283|consen 237 ----------PILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSF-AVH-IQ-SM 303 (397)
T ss_pred ----------ccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccc-eEE-Ee-ec
Confidence 111122345688999999999999888 79999999999885554432111111101111 111 22 44
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEEC
Q 004581 478 DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL 549 (744)
Q Consensus 478 d~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~ 549 (744)
+...++.--.++.+.++.+-+++.++.+.. |-..|.+.++-|+=+.+.+++.|+.|..|-.
T Consensus 304 ~s~vfv~~p~~~~lall~~~sgs~ir~l~~-----------h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 304 DSDVFVLFPNDGSLALLNLLEGSFVRRLST-----------HLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ccceEEEEecCCeEEEEEccCceEEEeeec-----------ccceeeEEeecCchhhhhccccCCccccccc
Confidence 555555556678999999999999999998 8889999999999999999999999999976
No 123
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.93 E-value=9.8e-24 Score=205.32 Aligned_cols=470 Identities=15% Similarity=0.159 Sum_probs=301.8
Q ss_pred CCCCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCC
Q 004581 2 GLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESE 81 (744)
Q Consensus 2 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (744)
.|+|..|+.+.. ..+.+||++.|.++.++++|...|.|+|++.||+.+|+|++ ++.+++|..+..+ ..
T Consensus 21 kPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~a---DK~VI~W~~klEG--------~L 88 (1081)
T KOG1538|consen 21 KPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSA---DKSVIIWTSKLEG--------IL 88 (1081)
T ss_pred CCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCC---ceeEEEecccccc--------ee
Confidence 467777777664 57999999999999999999999999999999987766533 3445555555322 22
Q ss_pred CCCCcccccccccccCC-eEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 004581 82 NDSDSDELHEQSVVEDR-RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAK 160 (744)
Q Consensus 82 ~~~~~~~~~~~~~~~~~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~ 160 (744)
...++..+.|+.+++-+ .||+++ =...-+|........ . ..-..+|.+++|..||++|+.|-.+|+|.+-+-
T Consensus 89 kYSH~D~IQCMsFNP~~h~LasCs-LsdFglWS~~qK~V~----K-~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk- 161 (1081)
T KOG1538|consen 89 KYSHNDAIQCMSFNPITHQLASCS-LSDFGLWSPEQKSVS----K-HKSSSRIICCSWTNDGQYLALGMFNGTISIRNK- 161 (1081)
T ss_pred eeccCCeeeEeecCchHHHhhhcc-hhhccccChhhhhHH----h-hhhheeEEEeeecCCCcEEEEeccCceEEeecC-
Confidence 33445555555555433 344333 344556665421111 0 112357888999999999999999999999874
Q ss_pred CCceEEEEEecCCCCCCCCceeEEEEEEecCC------eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCC
Q 004581 161 LGYEIYRITVGLGGLGSGPELCIWSLLSLRCG------TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHN 234 (744)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~ 234 (744)
+|+....+.-+. +...+||+++|+|.. .++..+...++.++.+. |+.+..-+.-.-.-.|+.+.++|.
T Consensus 162 ~gEek~~I~Rpg-----g~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGE 235 (1081)
T KOG1538|consen 162 NGEEKVKIERPG-----GSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGE 235 (1081)
T ss_pred CCCcceEEeCCC-----CCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCc
Confidence 666666665321 577899999999864 68888999999999987 777765555556678999999999
Q ss_pred EEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcc
Q 004581 235 RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPID 314 (744)
Q Consensus 235 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (744)
+++.||.|+.+.+|..+.-. +.++-...+.|.+++.. |++
T Consensus 236 y~LiGGsdk~L~~fTR~Gvr------------------LGTvg~~D~WIWtV~~~---------PNs------------- 275 (1081)
T KOG1538|consen 236 YILLGGSDKQLSLFTRDGVR------------------LGTVGEQDSWIWTVQAK---------PNS------------- 275 (1081)
T ss_pred EEEEccCCCceEEEeecCeE------------------EeeccccceeEEEEEEc---------cCC-------------
Confidence 99999999999999876643 44555566778888874 444
Q ss_pred ccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcc-cCC-----------------CCCCCccccccceeecCCeEE
Q 004581 315 FSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHE-ICP-----------------APQRVPIHLVHNTIFSHTSLL 376 (744)
Q Consensus 315 ~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~-~~~-----------------~~~~~~~~~v~~~~~s~~~~~ 376 (744)
+.++.|+.||+|..|++...+...... ... .......+.|..+++- +.++
T Consensus 276 -----------Q~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiY-rnrL 343 (1081)
T KOG1538|consen 276 -----------QYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIY-RNRL 343 (1081)
T ss_pred -----------ceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhh-hhhh
Confidence 499999999999999885422110000 000 0000011222222222 2233
Q ss_pred EEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceE
Q 004581 377 LVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEW 456 (744)
Q Consensus 377 l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~ 456 (744)
.+.-+..+.+|.+....... .-+++...-.....+.-+--.+..++.+.+..+..+|+.. -..+.|
T Consensus 344 AVQLpeki~iYel~se~~~~------------mhY~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~G--vk~ReW 409 (1081)
T KOG1538|consen 344 AVQLPEKILIYELYSEDLSD------------MHYRVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSG--VKEREW 409 (1081)
T ss_pred eecccceEEEEecccccccc------------chhHHHHHHHhhccceEEEEEcCeEEEEcccceeeecccc--hhhhhh
Confidence 34445677777766443221 1111110001111121122235677778888888888763 222344
Q ss_pred EeeeccCCcccccccEEEE--ee-CCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCC
Q 004581 457 IINKRQLPRKLQFAHSMIF--SY-DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ 533 (744)
Q Consensus 457 ~~~~~~~~~~~~~v~~i~~--sp-d~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~ 533 (744)
.++.. |+-+.. -| ...-|+.|..+|.|.-.=+.+.-++-... ....|.++.++...+
T Consensus 410 ~M~S~--------iRYikV~GGP~gREgL~vGlknGqV~kiF~dN~~PiLl~~------------~~tAvrClDINA~R~ 469 (1081)
T KOG1538|consen 410 QMESL--------IRYIKVIGGPPGREGLLVGLKNGQVLKIFVDNLFPILLLK------------QATAVRCLDINASRK 469 (1081)
T ss_pred hHHHH--------HHhhhhhcCCCCcceeEEEecCCcEEEEEecCCchhheec------------ccceeEEeeccCCcc
Confidence 44331 111111 12 34467888888877655455443333333 367799999999999
Q ss_pred EEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeE
Q 004581 534 WLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQV 588 (744)
Q Consensus 534 ~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v 588 (744)
.||+.+..++..++|+.+++....-+ .+.+++|+.+..++|...+. |.+
T Consensus 470 kLAvVDD~~~c~v~DI~t~elL~QEp-----g~nSV~wNT~~E~MlcfT~~-g~L 518 (1081)
T KOG1538|consen 470 KLAVVDDNDTCLVYDIDTKELLFQEP-----GANSVAWNTQCEDMLCFTGG-GYL 518 (1081)
T ss_pred eEEEEccCCeEEEEEccCCceEeecC-----CCceEEeeccccceEEEecC-Cce
Confidence 99999999999999999998754443 57889999866677766655 544
No 124
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=5.5e-24 Score=188.77 Aligned_cols=278 Identities=17% Similarity=0.196 Sum_probs=211.4
Q ss_pred CCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCC
Q 004581 178 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 256 (744)
Q Consensus 178 ~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 256 (744)
.....|.++.|+|.+ .|++++.||.+++||.....+...++ |..++++++|.++ ..+++|+.||.|+.+|+.++.
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~-- 86 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGN-- 86 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCC-ceEEEeccCceEEEEEecCCc--
Confidence 457889999999887 88888899999999999876666665 7899999999874 579999999999999999987
Q ss_pred CCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCe
Q 004581 257 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK 336 (744)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~ 336 (744)
...+..|...|+++..+ + ....+++||.|++
T Consensus 87 ----------------~~~igth~~~i~ci~~~---------~------------------------~~~~vIsgsWD~~ 117 (323)
T KOG1036|consen 87 ----------------EDQIGTHDEGIRCIEYS---------Y------------------------EVGCVISGSWDKT 117 (323)
T ss_pred ----------------ceeeccCCCceEEEEee---------c------------------------cCCeEEEcccCcc
Confidence 45667899999999986 2 2238999999999
Q ss_pred EEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEec
Q 004581 337 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK 416 (744)
Q Consensus 337 i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (744)
|++||.+........ .
T Consensus 118 ik~wD~R~~~~~~~~----------------------------------------------------------------d 133 (323)
T KOG1036|consen 118 IKFWDPRNKVVVGTF----------------------------------------------------------------D 133 (323)
T ss_pred EEEEecccccccccc----------------------------------------------------------------c
Confidence 999999852111000 0
Q ss_pred CCCCeEEEEEcCCCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEE
Q 004581 417 ASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVD 495 (744)
Q Consensus 417 ~~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d 495 (744)
....|.++.. .|..|++ +.+..+.+||+++-+.... ..-....-.++++++-|++.-.++++-||.|.+=.
T Consensus 134 ~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q------~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~ 205 (323)
T KOG1036|consen 134 QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQ------RRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEY 205 (323)
T ss_pred cCceEEEEec--cCCEEEEeecCceEEEEEcccccchhh------hccccceeEEEEEEEecCCCceEEEeecceEEEEc
Confidence 0123444333 3555555 6899999999986322221 11111222789999999999999999999999877
Q ss_pred ccCC----ceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEee
Q 004581 496 VSSS----ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGF 571 (744)
Q Consensus 496 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~ 571 (744)
++.. +....|+.|+..... ...--+|++|+|+|-.+.||||+.||.|.+||+.+.+.+..+.... ..|.+++|
T Consensus 206 ~d~s~~~~skkyaFkCHr~~~~~--~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~-~SI~slsf 282 (323)
T KOG1036|consen 206 FDDSEEAQSKKYAFKCHRLSEKD--TEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYE-TSISSLSF 282 (323)
T ss_pred cCCchHHhhhceeEEeeecccCC--ceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCC-CceEEEEe
Confidence 7654 455667775432111 1123469999999999999999999999999999999888887763 57999999
Q ss_pred cCCCCCeEEEEec
Q 004581 572 PPQNNNVLIITTS 584 (744)
Q Consensus 572 sp~~~~~l~~~~~ 584 (744)
+. ||..||+++.
T Consensus 283 s~-dG~~LAia~s 294 (323)
T KOG1036|consen 283 SM-DGSLLAIASS 294 (323)
T ss_pred cc-CCCeEEEEec
Confidence 99 9999999975
No 125
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=4e-24 Score=205.73 Aligned_cols=317 Identities=17% Similarity=0.165 Sum_probs=233.0
Q ss_pred ecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCC
Q 004581 124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTG 201 (744)
Q Consensus 124 ~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg 201 (744)
..+.+|++.|.|+...|.|.+|++|+.||+|+||.+.+|++++++. ....|.|++|+|.+ -+++.....
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~---------~d~~I~~vaw~P~~~~~vLAvA~~~ 464 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ---------FDSEIRSVAWNPLSDLCVLAVAVGE 464 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe---------ecceeEEEEecCCCCceeEEEEecC
Confidence 5677999999999999999999999999999999999999999997 56689999999988 344444444
Q ss_pred CEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEee----cCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeee
Q 004581 202 SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFST----GSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVR 277 (744)
Q Consensus 202 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (744)
.+.|-+..-|..+.... ....|+++ ..|+.+..|.-........ -++..-
T Consensus 465 ~~~ivnp~~G~~~e~~~-------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~-------------~v~~~I 518 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLEVGP-------------TKELLASAPNESEPDAAVVTWSRASLDELEK-------------GVCIVI 518 (733)
T ss_pred ceEEeCccccchhhhcc-------------hhhhhhcCCCccCCcccceeechhhhhhhcc-------------ceEEEE
Confidence 57777766553332111 01112221 2366788997664332110 144556
Q ss_pred eccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCC---eEEEEecCccCCCCCcccC
Q 004581 278 AHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT---KLFAYCANEFTKFSPHEIC 354 (744)
Q Consensus 278 ~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~---~i~~~~~~~~~~~~~~~~~ 354 (744)
.|...|+.+.|. ..+++|++...++ .|.++++.......++
T Consensus 519 ~~~k~i~~vtWH---------------------------------rkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF--- 562 (733)
T KOG0650|consen 519 KHPKSIRQVTWH---------------------------------RKGDYLATVMPDSGNKSVLIHQLSKRKSQSPF--- 562 (733)
T ss_pred ecCCccceeeee---------------------------------cCCceEEEeccCCCcceEEEEecccccccCch---
Confidence 788889999884 4555888876654 6666666542211110
Q ss_pred CCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEE
Q 004581 355 PAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFA 434 (744)
Q Consensus 355 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la 434 (744)
....+.+.++.|+|...++.
T Consensus 563 ------------------------------------------------------------~kskG~vq~v~FHPs~p~lf 582 (733)
T KOG0650|consen 563 ------------------------------------------------------------RKSKGLVQRVKFHPSKPYLF 582 (733)
T ss_pred ------------------------------------------------------------hhcCCceeEEEecCCCceEE
Confidence 01236688899999999999
Q ss_pred EEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEcc-CCceeeeeccCccccc
Q 004581 435 YSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS-SSELLHTFTPCREEHD 513 (744)
Q Consensus 435 ~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~~~ 513 (744)
+++...|++|++.. ...+ .++......+..++.+|.|.-|++++.|+.+..||++ +.++.+++..
T Consensus 583 VaTq~~vRiYdL~k---qelv-----KkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~------ 648 (733)
T KOG0650|consen 583 VATQRSVRIYDLSK---QELV-----KKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL------ 648 (733)
T ss_pred EEeccceEEEehhH---HHHH-----HHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh------
Confidence 99999999999975 2211 3344445589999999999999999999999999997 4467777777
Q ss_pred ccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC------CcceEEEEe--cCCC----CceeEEeecCCCCCeEEE
Q 004581 514 REIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE------IQRQHWFIS--RLEG----ASVTAAGFPPQNNNVLII 581 (744)
Q Consensus 514 ~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~------~~~~~~~~~--~~~~----~~v~~l~~sp~~~~~l~~ 581 (744)
|...+++++|++.-.++|+|+.||++.||.-. ....+..++ ..|. ..|....|+| ...+|++
T Consensus 649 -----H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP-~qpWLfs 722 (733)
T KOG0650|consen 649 -----HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHP-RQPWLFS 722 (733)
T ss_pred -----hhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccC-CCceEEe
Confidence 89999999999999999999999999998542 222222222 1232 3488889999 9999999
Q ss_pred EecCCeEEEE
Q 004581 582 TTSSNQVYVF 591 (744)
Q Consensus 582 ~~~d~~v~vw 591 (744)
++.||+|++|
T Consensus 723 AGAd~tirlf 732 (733)
T KOG0650|consen 723 AGADGTIRLF 732 (733)
T ss_pred cCCCceEEee
Confidence 9999999998
No 126
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.3e-24 Score=198.69 Aligned_cols=282 Identities=17% Similarity=0.224 Sum_probs=210.4
Q ss_pred CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCC-EEEEEeCCCeEEEEEccCCceEEEEEecCCCCC
Q 004581 98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLG 176 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 176 (744)
..|.+++-||+++||.+. ++.-..++.+.--..+|.+.+|.|+|. .+++++....+..||+++++....-.. . +
T Consensus 226 plllvaG~d~~lrifqvD-Gk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~-~-g-- 300 (514)
T KOG2055|consen 226 PLLLVAGLDGTLRIFQVD-GKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPP-Y-G-- 300 (514)
T ss_pred ceEEEecCCCcEEEEEec-CccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCC-C-C--
Confidence 689999999999999997 433333355555678999999999999 899999999999999988765433221 1 0
Q ss_pred CCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcC
Q 004581 177 SGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESI 255 (744)
Q Consensus 177 ~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 255 (744)
.....+.....++++ .|+..+..|.|.+....+++.+.+++. .+.|..++|+.+++.|++++.+|.|.+||++....
T Consensus 301 -~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~ 378 (514)
T KOG2055|consen 301 -VEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC 378 (514)
T ss_pred -cccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce
Confidence 123456677888999 899999999999999999999999986 78899999999999999999999999999987531
Q ss_pred CCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCC
Q 004581 256 GPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT 335 (744)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~ 335 (744)
+..+ -.||
T Consensus 379 -----------------~~rf-------------------------------------------------------~D~G 386 (514)
T KOG2055|consen 379 -----------------LHRF-------------------------------------------------------VDDG 386 (514)
T ss_pred -----------------EEEE-------------------------------------------------------eecC
Confidence 1100 0011
Q ss_pred eEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEe
Q 004581 336 KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKS 415 (744)
Q Consensus 336 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (744)
.
T Consensus 387 ~------------------------------------------------------------------------------- 387 (514)
T KOG2055|consen 387 S------------------------------------------------------------------------------- 387 (514)
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred cCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeC--CCcEE
Q 004581 416 KASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH--DRRIY 492 (744)
Q Consensus 416 ~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~--dg~i~ 492 (744)
-.-+++|.|++|.++|+| ..|.|.||+.+.--....- .+...+......|+++.|++|++.||.++. +..++
T Consensus 388 ---v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~P--kPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalr 462 (514)
T KOG2055|consen 388 ---VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNP--KPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALR 462 (514)
T ss_pred ---cceeeeeecCCCceEEeccCcceEEEeccchhhccCCC--CchhhhhhhheeeeeeeeCcchhhhhhhhhccccceE
Confidence 112455677777888885 5566777775431100000 000222233348999999999999998876 67899
Q ss_pred EEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC
Q 004581 493 VVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE 550 (744)
Q Consensus 493 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~ 550 (744)
+..+.+......|..... .-+.|++++|||.|.+||.|..+|.|.+|.+.
T Consensus 463 LVHvPS~TVFsNfP~~n~--------~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 463 LVHVPSCTVFSNFPTSNT--------KVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEeccceeeeccCCCCCC--------cccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 999988777777765322 45679999999999999999999999999864
No 127
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8.6e-25 Score=186.87 Aligned_cols=237 Identities=24% Similarity=0.294 Sum_probs=190.3
Q ss_pred CCCCeeEEecCCCeEEEEEccCC---ceeEEeeccCcceeEEeecc--CCCccccccccccccCCccccCCCCCCCCCcC
Q 004581 3 LPGGRLFSSSIDGSVSEWDLYDL---KQKIVLQSIDFSIWQMAVAP--SNSSLMHAVTNSDHIGNGYLNDKSNDSDDHET 77 (744)
Q Consensus 3 ~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~h~~~i~~v~~sp--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (744)
.-|.|||+++.|++|+|+.+... +++.+|.||.++|+.++|.. .|
T Consensus 21 yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G------------------------------ 70 (299)
T KOG1332|consen 21 YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFG------------------------------ 70 (299)
T ss_pred hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccC------------------------------
Confidence 35889999999999999999753 56789999999999999976 44
Q ss_pred ccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecC--CCEEEEEeCCCeEE
Q 004581 78 SESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSAD--GNMLYSGSSDGYIR 155 (744)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~d--g~~l~t~~~dg~i~ 155 (744)
.+||+++.||.|.||.-+++ ..........|...|++++|.|. |-.|++++.||.|.
T Consensus 71 --------------------~iLAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vs 129 (299)
T KOG1332|consen 71 --------------------TILASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVS 129 (299)
T ss_pred --------------------cEeeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEE
Confidence 69999999999999998755 55444777899999999999886 56899999999999
Q ss_pred EEEccCC--ceEEEEEecCCCCCCCCceeEEEEEEecC---C------------eEEEEcCCCCEEEEeCCCcce--EEE
Q 004581 156 SWDAKLG--YEIYRITVGLGGLGSGPELCIWSLLSLRC---G------------TLVSADSTGSVQFWDSRHGTL--LQA 216 (744)
Q Consensus 156 vwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~------------~l~s~~~dg~i~vwd~~~~~~--~~~ 216 (744)
|.+.++. -...++.. .|.-.|.+++|.|. | +|++|+.|+.|+||+...++. -++
T Consensus 130 vl~~~~~g~w~t~ki~~-------aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~ 202 (299)
T KOG1332|consen 130 VLTYDSSGGWTTSKIVF-------AHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERT 202 (299)
T ss_pred EEEEcCCCCccchhhhh-------ccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhh
Confidence 9988654 22223322 68889999999885 1 599999999999999987643 356
Q ss_pred eeccccceeEEEEcCCC----CEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccC
Q 004581 217 HSFHKGDVNALAAAPSH----NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPI 292 (744)
Q Consensus 217 ~~~h~~~v~~l~~~~~~----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 292 (744)
+.+|.+-|..++|.|.- .+|++++.||++.||..+... ..|. ...+......+..+.++
T Consensus 203 l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~-------------e~wk-~tll~~f~~~~w~vSWS--- 265 (299)
T KOG1332|consen 203 LEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY-------------EPWK-KTLLEEFPDVVWRVSWS--- 265 (299)
T ss_pred hhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc-------------Cccc-ccccccCCcceEEEEEe---
Confidence 89999999999999964 589999999999999887432 2332 23334455667888886
Q ss_pred CCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCc
Q 004581 293 SREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 344 (744)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~ 344 (744)
..| +.|+.++.|..+.+|....
T Consensus 266 ------~sG------------------------n~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 266 ------LSG------------------------NILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ------ccc------------------------cEEEEecCCcEEEEEEeCC
Confidence 333 4899999999999997654
No 128
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.3e-22 Score=205.34 Aligned_cols=463 Identities=13% Similarity=0.152 Sum_probs=302.8
Q ss_pred CCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCC
Q 004581 4 PGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEND 83 (744)
Q Consensus 4 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (744)
++.+.+.+..+..|.||...||.++..+..|..++..+.+.|....+
T Consensus 26 nD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~--------------------------------- 72 (792)
T KOG1963|consen 26 NDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENA--------------------------------- 72 (792)
T ss_pred cCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccc---------------------------------
Confidence 34554445556799999999999999999999999999999987532
Q ss_pred CCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccC-----------c--------------------
Q 004581 84 SDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSG-----------R-------------------- 132 (744)
Q Consensus 84 ~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-----------~-------------------- 132 (744)
.++.+++-||.|++||...+..+ +++..+.. .
T Consensus 73 --------------~~~~~~sl~G~I~vwd~~~~~Ll---kt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~ 135 (792)
T KOG1963|consen 73 --------------NYLIVCSLDGTIRVWDWSDGELL---KTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSK 135 (792)
T ss_pred --------------eEEEEEecCccEEEecCCCcEEE---EEEecCCceeEEEechhHhCccceeEeecccceeeeeccc
Confidence 36778888888888888755443 11111000 0
Q ss_pred ---------------------------EEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEE
Q 004581 133 ---------------------------VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWS 185 (744)
Q Consensus 133 ---------------------------V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 185 (744)
=.++.+++.|.+.+.. .+..+.+|++.++. ..... ......|.-.+.+
T Consensus 136 ~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~-~~~~~~~~~v~~~~-~~~~~---~~~~~~Htf~~t~ 210 (792)
T KOG1963|consen 136 KLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIV-HMCKIHIYFVPKHT-KHTSS---RDITVHHTFNITC 210 (792)
T ss_pred ccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEE-EeeeEEEEEecccc-eeecc---chhhhhhccccee
Confidence 1223333334333332 23467777776654 11111 1112246666899
Q ss_pred EEEecCC-eEEEEcCCCCEEEEeCCC----cceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCC
Q 004581 186 LLSLRCG-TLVSADSTGSVQFWDSRH----GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDG 260 (744)
Q Consensus 186 ~~~~~~~-~l~s~~~dg~i~vwd~~~----~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 260 (744)
.+++|++ .+++|..||.|.+|.--. ....+.++-|...|.+++|+++|.+|++||..+.+.+|.+.++.
T Consensus 211 ~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~------ 284 (792)
T KOG1963|consen 211 VALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK------ 284 (792)
T ss_pred EEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC------
Confidence 9999999 899999999999996332 22346778899999999999999999999999999999999876
Q ss_pred CCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEE
Q 004581 261 LSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAY 340 (744)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~ 340 (744)
.+.+..-...|..+.++ ||+. +......|..|.+.
T Consensus 285 ------------kqfLPRLgs~I~~i~vS---------~ds~------------------------~~sl~~~DNqI~li 319 (792)
T KOG1963|consen 285 ------------KQFLPRLGSPILHIVVS---------PDSD------------------------LYSLVLEDNQIHLI 319 (792)
T ss_pred ------------cccccccCCeeEEEEEc---------CCCC------------------------eEEEEecCceEEEE
Confidence 24456667889999997 5554 67777779999988
Q ss_pred ecCccCCCCCcccCCCC----CCCccccccceeecCC-eE-EEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEE
Q 004581 341 CANEFTKFSPHEICPAP----QRVPIHLVHNTIFSHT-SL-LLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK 414 (744)
Q Consensus 341 ~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~~-~~-~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (744)
.+.+............+ ...+....+.++++|. +. .+....+.+++|++..... ++++.
T Consensus 320 ~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~---------------i~~~~ 384 (792)
T KOG1963|consen 320 KASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDST---------------IYKLQ 384 (792)
T ss_pred eccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccce---------------eeeEE
Confidence 87654332221111111 3335567778888883 22 3344567999999886652 22222
Q ss_pred e----------cCCCCeEEEEEcCCCCEEEEEc-----------CCceEEEEeecCCCCCceEEeeeccCCcccccccEE
Q 004581 415 S----------KASRKIICSTISNSGMLFAYSD-----------HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSM 473 (744)
Q Consensus 415 ~----------~~~~~i~~~~~s~~g~~la~~~-----------~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 473 (744)
. .....+++++.+..|.++++.. .-.+++|.... ..+-|.+.+.....|...+...
T Consensus 385 v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~---~~kt~~L~T~I~~PH~~~~vat 461 (792)
T KOG1963|consen 385 VCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP---NSKTFILNTKINNPHGNAFVAT 461 (792)
T ss_pred EEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC---CcceeEEEEEEecCCCceeEEE
Confidence 1 1124577888888999998742 23567888765 4455666665555555544444
Q ss_pred EE-eeCCC-EEEEEeCCCcEEEEEccCCceeee------eccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEE
Q 004581 474 IF-SYDSS-QLIIAGHDRRIYVVDVSSSELLHT------FTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVY 545 (744)
Q Consensus 474 ~~-spd~~-~l~~~~~dg~i~v~d~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~ 545 (744)
+| ++... ..++++.||.++||-+.+.+-+.. .... -.-|..++++++||.||..||.+ .+++|.
T Consensus 462 ~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i-------~sy~k~~i~a~~fs~dGslla~s-~~~~It 533 (792)
T KOG1963|consen 462 IFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAI-------GSYHKTPITALCFSQDGSLLAVS-FDDTIT 533 (792)
T ss_pred EEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeee-------eccccCcccchhhcCCCcEEEEe-cCCEEE
Confidence 44 33333 899999999999999843321111 1000 00168899999999999766655 788999
Q ss_pred EEECCCcceEEEEecCCCCceeEEeecCC-CCCeEEEEecCCeEEEEEcCCCcc
Q 004581 546 IFNLEIQRQHWFISRLEGASVTAAGFPPQ-NNNVLIITTSSNQVYVFDVEAKQL 598 (744)
Q Consensus 546 iwd~~~~~~~~~~~~~~~~~v~~l~~sp~-~~~~l~~~~~d~~v~vwd~~~~~~ 598 (744)
+||..+...+....+....++..+.|..+ -....++......+.+||+.+..+
T Consensus 534 iwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l 587 (792)
T KOG1963|consen 534 IWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMSL 587 (792)
T ss_pred EecCCChhhhhccccccccchHhHhhhcccccccceeeccCceEehHhhhhhhe
Confidence 99999843222222323344444444320 112334445567899999988765
No 129
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.8e-24 Score=202.39 Aligned_cols=307 Identities=16% Similarity=0.165 Sum_probs=221.7
Q ss_pred EEEEecCC-eEEEEEecCCCceeEeecccCc-cCcEEEEEEecCCCEEEEEeC-CCeEEEEEccCCceEEEEEecCCCCC
Q 004581 100 VALACDDG-CVRIYRITDSDELIYHRSLPRV-SGRVLSVTWSADGNMLYSGSS-DGYIRSWDAKLGYEIYRITVGLGGLG 176 (744)
Q Consensus 100 la~~~~dg-~i~iwd~~~~~~~~~~~~~~~h-~~~V~~~~~s~dg~~l~t~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~ 176 (744)
+.+++.|. .+.+||+.+|..+ ..+++- ...-.++..- .+.+++++.. ...|.+|.+..........
T Consensus 10 ~sssS~d~~~~~~~dl~TGt~~---~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~------- 78 (476)
T KOG0646|consen 10 CSSSSFDPINCIVWDLRTGTSL---LQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYI------- 78 (476)
T ss_pred EeccCCCCcceeEEecCCCcee---EEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhc-------
Confidence 33444454 4999999988766 334332 1111111111 2356666654 4579999986655444222
Q ss_pred CCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcC
Q 004581 177 SGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESI 255 (744)
Q Consensus 177 ~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 255 (744)
-..+.|.+++-+|+| +|+.|+..|.|.+|.+.+|.++..+.+|-..|+|+.|+.||.+|++||.||.|.+|.+..--.
T Consensus 79 -v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~ 157 (476)
T KOG0646|consen 79 -VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS 157 (476)
T ss_pred -ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc
Confidence 367789999999999 566666999999999999999999999999999999999999999999999999999875332
Q ss_pred CCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCC
Q 004581 256 GPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT 335 (744)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~ 335 (744)
...+ ..-.+...+..|+-.|+.+.+. +.+ ...+|++++.|.
T Consensus 158 a~~~--------~~~~p~~~f~~HtlsITDl~ig---------~Gg----------------------~~~rl~TaS~D~ 198 (476)
T KOG0646|consen 158 ADND--------HSVKPLHIFSDHTLSITDLQIG---------SGG----------------------TNARLYTASEDR 198 (476)
T ss_pred cccC--------CCccceeeeccCcceeEEEEec---------CCC----------------------ccceEEEecCCc
Confidence 1111 1233467788999999999885 111 123899999999
Q ss_pred eEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEe
Q 004581 336 KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKS 415 (744)
Q Consensus 336 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (744)
++++||+.... .+..+..
T Consensus 199 t~k~wdlS~g~--------------------------------------------------------------LLlti~f 216 (476)
T KOG0646|consen 199 TIKLWDLSLGV--------------------------------------------------------------LLLTITF 216 (476)
T ss_pred eEEEEEeccce--------------------------------------------------------------eeEEEec
Confidence 99999997532 1222222
Q ss_pred cCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCCCCc--------eEEeeeccCCcccc--cccEEEEeeCCCEEEE
Q 004581 416 KASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQG--------EWIINKRQLPRKLQ--FAHSMIFSYDSSQLII 484 (744)
Q Consensus 416 ~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~--------~~~~~~~~~~~~~~--~v~~i~~spd~~~l~~ 484 (744)
...+.+++++|-+..+.+| .+|.|.+.++..-.+... ....+...+.+|.. .|+|++++-||..|++
T Consensus 217 --p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlS 294 (476)
T KOG0646|consen 217 --PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLS 294 (476)
T ss_pred --CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEe
Confidence 2667888888888877775 778887777654221110 11122244556666 8999999999999999
Q ss_pred EeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCC
Q 004581 485 AGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDG 532 (744)
Q Consensus 485 ~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg 532 (744)
|+.||.|+|||+.+.++++++.. ..++|+.+.+.|-.
T Consensus 295 Gd~dg~VcvWdi~S~Q~iRtl~~-----------~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 295 GDEDGKVCVWDIYSKQCIRTLQT-----------SKGPVTNLQINPLE 331 (476)
T ss_pred eCCCCCEEEEecchHHHHHHHhh-----------hccccceeEeeccc
Confidence 99999999999999999999985 58899999986643
No 130
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=4.7e-24 Score=199.37 Aligned_cols=246 Identities=15% Similarity=0.208 Sum_probs=193.6
Q ss_pred eeEEecCCCeEEEEEccCC----------ceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCc
Q 004581 7 RLFSSSIDGSVSEWDLYDL----------KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHE 76 (744)
Q Consensus 7 ~l~~~~~d~~i~iwd~~~~----------~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (744)
.+|+.+..+.|.|||..+- .+..+|.+|...=..++|++...
T Consensus 139 iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~---------------------------- 190 (422)
T KOG0264|consen 139 IVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQE---------------------------- 190 (422)
T ss_pred EEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccc----------------------------
Confidence 3677889999999998642 22237889988777888888763
Q ss_pred CccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCC----ceeEeecccCccCcEEEEEEecC-CCEEEEEeCC
Q 004581 77 TSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSD----ELIYHRSLPRVSGRVLSVTWSAD-GNMLYSGSSD 151 (744)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~----~~~~~~~~~~h~~~V~~~~~s~d-g~~l~t~~~d 151 (744)
.+|++++.|+.|++||+.... .+.....+.+|+..|..++|++- ...+++++.|
T Consensus 191 ---------------------g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd 249 (422)
T KOG0264|consen 191 ---------------------GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDD 249 (422)
T ss_pred ---------------------eeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCC
Confidence 489999999999999998433 24555788999999999999984 5578899999
Q ss_pred CeEEEEEccC--CceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCC-cceEEEeeccccceeE
Q 004581 152 GYIRSWDAKL--GYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRH-GTLLQAHSFHKGDVNA 226 (744)
Q Consensus 152 g~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~ 226 (744)
+.+.|||+++ .+...... +|...|+|++|+|-+ .|++|+.|++|++||++. .+++.++.+|...|.+
T Consensus 250 ~~L~iwD~R~~~~~~~~~~~--------ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~ 321 (422)
T KOG0264|consen 250 GKLMIWDTRSNTSKPSHSVK--------AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQ 321 (422)
T ss_pred CeEEEEEcCCCCCCCccccc--------ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEE
Confidence 9999999995 33333333 799999999999977 789999999999999997 5678999999999999
Q ss_pred EEEcCCC-CEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccc
Q 004581 227 LAAAPSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKR 305 (744)
Q Consensus 227 l~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~ 305 (744)
+.|+|.. ..|++++.|+.+.+||+..-..... ........-..+..-.||...|..+.|+ |...
T Consensus 322 V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~---~eda~dgppEllF~HgGH~~kV~DfsWn---------p~eP--- 386 (422)
T KOG0264|consen 322 VEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS---PEDAEDGPPELLFIHGGHTAKVSDFSWN---------PNEP--- 386 (422)
T ss_pred EEeCCCCCceeEecccCCcEEEEeccccccccC---hhhhccCCcceeEEecCcccccccccCC---------CCCC---
Confidence 9999975 6777889999999999986432110 0111122233456668899999999886 3332
Q ss_pred cCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCc
Q 004581 306 SRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 344 (744)
Q Consensus 306 ~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~ 344 (744)
| .++|.+.|+.+.+|.+..
T Consensus 387 --------------W------~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 387 --------------W------TIASVAEDNILQIWQMAE 405 (422)
T ss_pred --------------e------EEEEecCCceEEEeeccc
Confidence 2 899999999999999874
No 131
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=1.8e-22 Score=201.75 Aligned_cols=184 Identities=12% Similarity=0.148 Sum_probs=141.7
Q ss_pred CeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCC
Q 004581 6 GRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD 85 (744)
Q Consensus 6 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (744)
..+++++.|+.|.+||+.+++.+..+..+. .+.+++|+|+++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~------------------------------------- 43 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGK------------------------------------- 43 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCC-------------------------------------
Confidence 457889999999999999999999888654 478899999993
Q ss_pred cccccccccccCCeE-EEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEE-eCCCeEEEEEccCCc
Q 004581 86 SDELHEQSVVEDRRV-ALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSG-SSDGYIRSWDAKLGY 163 (744)
Q Consensus 86 ~~~~~~~~~~~~~~l-a~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~-~~dg~i~vwd~~~~~ 163 (744)
.+ ++++.++.|++||..+++.. ..+..+.. +..++|+|+++.|+++ +.++.|++||+.+++
T Consensus 44 -------------~l~~~~~~~~~v~~~d~~~~~~~---~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~ 106 (300)
T TIGR03866 44 -------------LLYVCASDSDTIQVIDLATGEVI---GTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRK 106 (300)
T ss_pred -------------EEEEEECCCCeEEEEECCCCcEE---EeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCe
Confidence 44 56778999999999866554 44444433 5678999999987655 568999999999888
Q ss_pred eEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCC-CEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEee-c
Q 004581 164 EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTG-SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFST-G 240 (744)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg-~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~-~ 240 (744)
.+..+. ....+.+++|+|++ .++++..++ .+.+||..+++.+..+.. .....+++|+|++++|+++ .
T Consensus 107 ~~~~~~---------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 107 VLAEIP---------VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred EEeEee---------CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC
Confidence 777665 22345779999999 666666654 577889988877665543 3456789999999988655 4
Q ss_pred CCCeEEEEEcccCc
Q 004581 241 SDGQVILYKASCES 254 (744)
Q Consensus 241 ~dg~i~iw~~~~~~ 254 (744)
.++.|++||+.++.
T Consensus 177 ~~~~v~i~d~~~~~ 190 (300)
T TIGR03866 177 IGGTVSVIDVATRK 190 (300)
T ss_pred CCCEEEEEEcCcce
Confidence 58999999987644
No 132
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.5e-23 Score=196.24 Aligned_cols=283 Identities=16% Similarity=0.159 Sum_probs=211.7
Q ss_pred ecCC-CeEEEEEccCCceeEEeeccCc-ce-eEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcc
Q 004581 11 SSID-GSVSEWDLYDLKQKIVLQSIDF-SI-WQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSD 87 (744)
Q Consensus 11 ~~~d-~~i~iwd~~~~~~~~~~~~h~~-~i-~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (744)
++.| ..+.+||+.||....++++-.. .- .+-++.+ .+++++.. ....+-+|...++.... ...-..++
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~--~yllsaq~--~rp~l~vw~i~k~~~~~-----q~~v~Pg~ 83 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNN--EYLLSAQL--KRPLLHVWEILKKDQVV-----QYIVLPGP 83 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhhhch--hheeeecc--cCccccccccCchhhhh-----hhcccccc
Confidence 3444 4599999999999888886421 11 1222222 55555432 22344555554433322 33344556
Q ss_pred cccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccC------
Q 004581 88 ELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL------ 161 (744)
Q Consensus 88 ~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~------ 161 (744)
..+..+.+.|.+|+.|+..|.|++|.+.+|..+ ..+.+|-..|+|+.|+-||.+|+||+.||.|.+|++.+
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL---~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSSGILL---NVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEeccccHH---HHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 666677788888888889999999999999888 88899999999999999999999999999999998732
Q ss_pred ---CceEEEEEecCCCCCCCCceeEEEEEEecCC---eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCE
Q 004581 162 ---GYEIYRITVGLGGLGSGPELCIWSLLSLRCG---TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNR 235 (744)
Q Consensus 162 ---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 235 (744)
-+..+.+. +|.-.|+.+...+.| +|++++.|.++++||+..|.++.++.. ...+.+++.+|.+..
T Consensus 161 ~~~~~p~~~f~--------~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~ 231 (476)
T KOG0646|consen 161 DHSVKPLHIFS--------DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERV 231 (476)
T ss_pred CCCccceeeec--------cCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccE
Confidence 23344444 799999999988765 899999999999999999999988875 778999999999999
Q ss_pred EEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccC--cceeeeeeccCCCCCCCCcccccccCCCCCCc
Q 004581 236 VFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTH--DVRALTVAVPISREDPLPEDKVKRSRGREKPI 313 (744)
Q Consensus 236 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (744)
+++|+.+|.|.+.++..-.....+ +........-.....+.+|.+ .|+|++++ .||.
T Consensus 232 ~yiGt~~G~I~~~~~~~~~~~~~~-v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais---------~Dgt----------- 290 (476)
T KOG0646|consen 232 VYIGTEEGKIFQNLLFKLSGQSAG-VNQKGRHEENTQINVLVGHENESAITCLAIS---------TDGT----------- 290 (476)
T ss_pred EEecCCcceEEeeehhcCCccccc-ccccccccccceeeeeccccCCcceeEEEEe---------cCcc-----------
Confidence 999999999999887654311110 111111122334667789988 99999997 5554
Q ss_pred cccccccccCCCcEEEEecCCCeEEEEecCccCCC
Q 004581 314 DFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKF 348 (744)
Q Consensus 314 ~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~ 348 (744)
+|++|+.||.+++||+...+.+
T Consensus 291 -------------lLlSGd~dg~VcvWdi~S~Q~i 312 (476)
T KOG0646|consen 291 -------------LLLSGDEDGKVCVWDIYSKQCI 312 (476)
T ss_pred -------------EEEeeCCCCCEEEEecchHHHH
Confidence 9999999999999999875533
No 133
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=4.9e-22 Score=198.66 Aligned_cols=292 Identities=15% Similarity=0.160 Sum_probs=203.9
Q ss_pred CCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eE-EEEcCCCCEEEEeCCCcceEEEeec
Q 004581 142 GNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TL-VSADSTGSVQFWDSRHGTLLQAHSF 219 (744)
Q Consensus 142 g~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~s~~~dg~i~vwd~~~~~~~~~~~~ 219 (744)
++.+++++.|+.|++||+.+++.+..+.. + ..+.+++|+|++ .+ ++++.++.|++||..+++.+..+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~--------~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 71 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPV--------G-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS 71 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEEC--------C-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC
Confidence 35788999999999999999998888762 2 235679999999 44 6677899999999999988877765
Q ss_pred cccceeEEEEcCCCCEEEee-cCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCC
Q 004581 220 HKGDVNALAAAPSHNRVFST-GSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPL 298 (744)
Q Consensus 220 h~~~v~~l~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~ 298 (744)
+. .+..++|+|+++.++++ +.|+.+++||+.+... +..+. +...+.+++++
T Consensus 72 ~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~-----------------~~~~~-~~~~~~~~~~~--------- 123 (300)
T TIGR03866 72 GP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKV-----------------LAEIP-VGVEPEGMAVS--------- 123 (300)
T ss_pred CC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE-----------------EeEee-CCCCcceEEEC---------
Confidence 44 35788999999987665 5689999999987541 22222 22345667775
Q ss_pred CcccccccCCCCCCccccccccccCCCcEEEEecCCC-eEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEE
Q 004581 299 PEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT-KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLL 377 (744)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 377 (744)
|++. .+++++.++ .+..||..+..
T Consensus 124 ~dg~------------------------~l~~~~~~~~~~~~~d~~~~~------------------------------- 148 (300)
T TIGR03866 124 PDGK------------------------IVVNTSETTNMAHFIDTKTYE------------------------------- 148 (300)
T ss_pred CCCC------------------------EEEEEecCCCeEEEEeCCCCe-------------------------------
Confidence 5554 777776654 45556654311
Q ss_pred EEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE--cCCceEEEEeecCCCCCce
Q 004581 378 VQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGE 455 (744)
Q Consensus 378 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~--~~~~v~l~~~~~~~~~~~~ 455 (744)
.+..+.. ...+.+++|+|+|++++++ .++.+++|++.... ....
T Consensus 149 -------------------------------~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~-~~~~ 194 (300)
T TIGR03866 149 -------------------------------IVDNVLV--DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK-VIKK 194 (300)
T ss_pred -------------------------------EEEEEEc--CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce-eeee
Confidence 0001111 1234578899999988653 58899999997621 1111
Q ss_pred EEeeeccCCcccccccEEEEeeCCCEEEEE-eCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCE
Q 004581 456 WIINKRQLPRKLQFAHSMIFSYDSSQLIIA-GHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQW 534 (744)
Q Consensus 456 ~~~~~~~~~~~~~~v~~i~~spd~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~ 534 (744)
+................++|+||+++++++ +.++.|.+||+.+++.+..+. +...+.+++|+|+|++
T Consensus 195 ~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~------------~~~~~~~~~~~~~g~~ 262 (300)
T TIGR03866 195 ITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL------------VGQRVWQLAFTPDEKY 262 (300)
T ss_pred eeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE------------eCCCcceEEECCCCCE
Confidence 111110011111134578899999986554 446789999999888776654 3457889999999999
Q ss_pred EEEEe-CCCcEEEEECCCcceEEEEecCCCCceeEEeecC
Q 004581 535 LAAVN-CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPP 573 (744)
Q Consensus 535 las~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp 573 (744)
|++++ .+|.|.+||+++++.+..++. +..++.++|+|
T Consensus 263 l~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~ 300 (300)
T TIGR03866 263 LLTTNGVSNDVSVIDVAALKVIKSIKV--GRLPWGVVVRP 300 (300)
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEc--ccccceeEeCC
Confidence 98864 689999999999998888864 34679998875
No 134
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=1.6e-23 Score=195.90 Aligned_cols=253 Identities=17% Similarity=0.208 Sum_probs=192.6
Q ss_pred CeEEEEecCCeEEEEEecCCCce-------eEeecccCccCcEEEEEEecCCC-EEEEEeCCCeEEEEEccCCceEEEEE
Q 004581 98 RRVALACDDGCVRIYRITDSDEL-------IYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKLGYEIYRIT 169 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~~~-------~~~~~~~~h~~~V~~~~~s~dg~-~l~t~~~dg~i~vwd~~~~~~~~~~~ 169 (744)
..+|+++..+.|.|||....... ....+|.+|+..=.+++|++... .|++++.|++|++||+.........
T Consensus 138 ~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~- 216 (422)
T KOG0264|consen 138 NIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKV- 216 (422)
T ss_pred cEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCcc-
Confidence 47889999999999999743322 22237889999888999998654 7899999999999999764331000
Q ss_pred ecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCC--CcceEEEeeccccceeEEEEcCC-CCEEEeecCCCe
Q 004581 170 VGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSR--HGTLLQAHSFHKGDVNALAAAPS-HNRVFSTGSDGQ 244 (744)
Q Consensus 170 ~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~l~~~~~-~~~l~~~~~dg~ 244 (744)
........+|...|..++|++-. .+.+++.|+.+.|||.+ +.++.....+|.++|.|++|+|- +..||+|+.|++
T Consensus 217 ~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t 296 (422)
T KOG0264|consen 217 VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT 296 (422)
T ss_pred ccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc
Confidence 00001112799999999999976 89999999999999999 56667788899999999999994 567888999999
Q ss_pred EEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCC
Q 004581 245 VILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLG 324 (744)
Q Consensus 245 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 324 (744)
|++||+++... ++..+.+|...|..+.|+ |...
T Consensus 297 V~LwDlRnL~~----------------~lh~~e~H~dev~~V~WS---------Ph~e---------------------- 329 (422)
T KOG0264|consen 297 VALWDLRNLNK----------------PLHTFEGHEDEVFQVEWS---------PHNE---------------------- 329 (422)
T ss_pred EEEeechhccc----------------CceeccCCCcceEEEEeC---------CCCC----------------------
Confidence 99999998653 467889999999999998 4432
Q ss_pred CcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCC
Q 004581 325 VPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGH 404 (744)
Q Consensus 325 ~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~ 404 (744)
.+|++++.|+.+.+||+......+... . ..
T Consensus 330 -tvLASSg~D~rl~vWDls~ig~eq~~e--------------d-----------------------------------a~ 359 (422)
T KOG0264|consen 330 -TVLASSGTDRRLNVWDLSRIGEEQSPE--------------D-----------------------------------AE 359 (422)
T ss_pred -ceeEecccCCcEEEEeccccccccChh--------------h-----------------------------------hc
Confidence 489999999999999998643222100 0 00
Q ss_pred CCcceEEEEEecCCCCeEEEEEcCCCCEEEE--EcCCceEEEEeec
Q 004581 405 ASTSLLVQVKSKASRKIICSTISNSGMLFAY--SDHVKPSLFELKK 448 (744)
Q Consensus 405 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~--~~~~~v~l~~~~~ 448 (744)
..+..+.-+..+|...|..+.|+|+..++++ +.|+.+.||.+..
T Consensus 360 dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 360 DGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 1112333445677788999999999977665 5889999999863
No 135
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1e-22 Score=180.76 Aligned_cols=273 Identities=17% Similarity=0.192 Sum_probs=198.4
Q ss_pred CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCC
Q 004581 98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS 177 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 177 (744)
.+||+||.||.|.|||+.+...- +.+.+|..+|+|++||+||+.|+|++.|..|.+||+..|.+++++.
T Consensus 36 ~~lAvGc~nG~vvI~D~~T~~ia---r~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-------- 104 (405)
T KOG1273|consen 36 DYLAVGCANGRVVIYDFDTFRIA---RMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-------- 104 (405)
T ss_pred ceeeeeccCCcEEEEEccccchh---hhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE--------
Confidence 69999999999999999876644 8899999999999999999999999999999999999999999997
Q ss_pred CCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcceEEEeeccc----cceeEEEEcCCCCEEEeecCCCeEEEEEcc
Q 004581 178 GPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHK----GDVNALAAAPSHNRVFSTGSDGQVILYKAS 251 (744)
Q Consensus 178 ~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~h~----~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~ 251 (744)
...+|+.+.|+|.. ..++.-.+..-.+-++..+....--.... ..-.+..|.+.|+++++|...|.+.+++..
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 77899999999976 44444444444444444322111001001 112334688999999999999999999998
Q ss_pred cCcCCCCCCCCcccccceEEEEeeeeecc-CcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEE
Q 004581 252 CESIGPNDGLSSSEVIKKWIYVGSVRAHT-HDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLIS 330 (744)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s 330 (744)
+-. ++..++..+ ..|..+.++ .. +..|+.
T Consensus 184 t~e-----------------~vas~rits~~~IK~I~~s---------~~------------------------g~~lii 213 (405)
T KOG1273|consen 184 TLE-----------------CVASFRITSVQAIKQIIVS---------RK------------------------GRFLII 213 (405)
T ss_pred hhe-----------------eeeeeeechheeeeEEEEe---------cc------------------------CcEEEE
Confidence 865 355555554 677888775 23 348999
Q ss_pred ecCCCeEEEEecCccCCCCCcccCCCCCCCccccc-----cceeecCCeEEEEEeCC---eEEEEEeeccCCcccCCCCC
Q 004581 331 AGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLV-----HNTIFSHTSLLLVQYSC---RLDILSVRLENNVESRSSSG 402 (744)
Q Consensus 331 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~---~i~i~~~~~~~~~~~~~~~~ 402 (744)
-+.|..|+.|++....... ....+.+.......| .+++||.+|.+++.++. .+.||.-..++
T Consensus 214 NtsDRvIR~ye~~di~~~~-r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~Gs--------- 283 (405)
T KOG1273|consen 214 NTSDRVIRTYEISDIDDEG-RDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGS--------- 283 (405)
T ss_pred ecCCceEEEEehhhhcccC-ccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcc---------
Confidence 9999999999987533221 111111212222333 35788999999987754 78888866654
Q ss_pred CCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeec
Q 004581 403 GHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKK 448 (744)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~ 448 (744)
.+.-+..........+.|.|-...++.-..|.+++|....
T Consensus 284 ------LVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 284 ------LVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAVVQ 323 (405)
T ss_pred ------eeeeecCCchhheeecccccceeeeeeccCCceEEEEeec
Confidence 3333333334677888899988888888889999998764
No 136
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.8e-22 Score=204.66 Aligned_cols=286 Identities=17% Similarity=0.199 Sum_probs=221.4
Q ss_pred CccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCC-ceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEE
Q 004581 128 RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG-YEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFW 206 (744)
Q Consensus 128 ~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vw 206 (744)
+|...-+.++|.|+|++|.+++.||.|++|+..+- +....+. .+...|.+++...+ +|++|+.+++|.+|
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~--------~~g~~v~~ia~~s~-~f~~~s~~~tv~~y 81 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID--------ISGELVSSIACYSN-HFLTGSEQNTVLRY 81 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh--------ccCceeEEEeeccc-ceEEeeccceEEEe
Confidence 78889999999999999999999999999997665 3333332 25667777766533 89999999999999
Q ss_pred eCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceee
Q 004581 207 DSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRAL 286 (744)
Q Consensus 207 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 286 (744)
...+++.-..+...+-++.+++|+.+|++++.|+.|-.|++.+...... ...+++|..+|.++
T Consensus 82 ~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~-----------------~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 82 KFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ-----------------EKVLRGHDAPVLQL 144 (933)
T ss_pred eCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch-----------------heeecccCCceeee
Confidence 9988776555555577899999999999999999999999999988763 67889999999999
Q ss_pred eeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCcccccc
Q 004581 287 TVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVH 366 (744)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 366 (744)
.+. |.+. +|++.+-||.|++|++.+........
T Consensus 145 ~~~---------p~~~------------------------fLAvss~dG~v~iw~~~~~~~~~tl~-------------- 177 (933)
T KOG1274|consen 145 SYD---------PKGN------------------------FLAVSSCDGKVQIWDLQDGILSKTLT-------------- 177 (933)
T ss_pred eEc---------CCCC------------------------EEEEEecCceEEEEEcccchhhhhcc--------------
Confidence 996 4444 99999999999999998533211000
Q ss_pred ceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEe
Q 004581 367 NTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFEL 446 (744)
Q Consensus 367 ~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~ 446 (744)
. +.++.
T Consensus 178 --------------------------------------------------------~--v~k~n---------------- 183 (933)
T KOG1274|consen 178 --------------------------------------------------------G--VDKDN---------------- 183 (933)
T ss_pred --------------------------------------------------------c--CCccc----------------
Confidence 0 00000
Q ss_pred ecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEE
Q 004581 447 KKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKM 526 (744)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 526 (744)
.. .. ...++.++|+|+|..|+....|+.|.+|+..+++....+.... +...++.+
T Consensus 184 -----~~--------~~---s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~---------~ss~~~~~ 238 (933)
T KOG1274|consen 184 -----EF--------IL---SRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL---------SSSKFSDL 238 (933)
T ss_pred -----cc--------cc---cceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccc---------cccceEEE
Confidence 00 00 1256778999999889889999999999999998888877631 34449999
Q ss_pred EECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEE
Q 004581 527 FTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVF 591 (744)
Q Consensus 527 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vw 591 (744)
+|||+|+|||+++.||.|.|||.++... ......|++++|.| +.+-+-.....|...+|
T Consensus 239 ~wsPnG~YiAAs~~~g~I~vWnv~t~~~-----~~~~~~Vc~~aw~p-~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 239 QWSPNGKYIAASTLDGQILVWNVDTHER-----HEFKRAVCCEAWKP-NANAITLITALGTLGVS 297 (933)
T ss_pred EEcCCCcEEeeeccCCcEEEEecccchh-----ccccceeEEEecCC-CCCeeEEEeeccccccC
Confidence 9999999999999999999999998332 11235899999999 77766555555544444
No 137
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=8.3e-23 Score=190.81 Aligned_cols=286 Identities=15% Similarity=0.164 Sum_probs=217.4
Q ss_pred CCceeEEEEEEecCC-eEEEEcCCCCEEEEeCC--CcceEEEeeccccceeEEEEcCCCC-EEEeecCCCeEEEEEcccC
Q 004581 178 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSR--HGTLLQAHSFHKGDVNALAAAPSHN-RVFSTGSDGQVILYKASCE 253 (744)
Q Consensus 178 ~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~l~~~~~~~-~l~~~~~dg~i~iw~~~~~ 253 (744)
...+.|.++.|+|.. .+++++.|++++||.+. ....++++.....+|.+.+|.|+|. .+++++...-++.||+.+.
T Consensus 211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 355789999999999 89999999999999776 3456788888889999999999998 8999999999999999886
Q ss_pred cCCCCCCCCcccccceEEEEeeeeecc-CcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEec
Q 004581 254 SIGPNDGLSSSEVIKKWIYVGSVRAHT-HDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG 332 (744)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~ 332 (744)
+.. .+....++. ..+....++ +++. +|+..|
T Consensus 291 k~~---------------k~~~~~g~e~~~~e~FeVS---------hd~~------------------------fia~~G 322 (514)
T KOG2055|consen 291 KVT---------------KLKPPYGVEEKSMERFEVS---------HDSN------------------------FIAIAG 322 (514)
T ss_pred ccc---------------cccCCCCcccchhheeEec---------CCCC------------------------eEEEcc
Confidence 631 122333333 234455554 4444 889999
Q ss_pred CCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEE
Q 004581 333 DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQ 412 (744)
Q Consensus 333 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (744)
..|.|.+....+... +..
T Consensus 323 ~~G~I~lLhakT~el--------------------------------------------------------------i~s 340 (514)
T KOG2055|consen 323 NNGHIHLLHAKTKEL--------------------------------------------------------------ITS 340 (514)
T ss_pred cCceEEeehhhhhhh--------------------------------------------------------------hhe
Confidence 999888876654321 111
Q ss_pred EEecCCCCeEEEEEcCCCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcE
Q 004581 413 VKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRI 491 (744)
Q Consensus 413 ~~~~~~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i 491 (744)
++. .+.+..++|+.||+.|.+ +.+|.|.+|++..+ .....|.-.. .-.-++++.|+++.+||+|+..|.|
T Consensus 341 ~Ki--eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~-~~~~rf~D~G------~v~gts~~~S~ng~ylA~GS~~GiV 411 (514)
T KOG2055|consen 341 FKI--EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN-SCLHRFVDDG------SVHGTSLCISLNGSYLATGSDSGIV 411 (514)
T ss_pred eee--ccEEeeEEEecCCcEEEEEcCCceEEEEecCCc-ceEEEEeecC------ccceeeeeecCCCceEEeccCcceE
Confidence 221 267888999999977655 68999999999872 2222221111 1145678889999999999999999
Q ss_pred EEEEccC------CceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeC--CCcEEEEECCCcceEEEEecCCC
Q 004581 492 YVVDVSS------SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC--FGDVYIFNLEIQRQHWFISRLEG 563 (744)
Q Consensus 492 ~v~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~--dg~i~iwd~~~~~~~~~~~~~~~ 563 (744)
.|||.++ .+++.++.. -...|++|.|++|++.||.+|. ...+++-.+.+......+|...+
T Consensus 412 NIYd~~s~~~s~~PkPik~~dN-----------Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~ 480 (514)
T KOG2055|consen 412 NIYDGNSCFASTNPKPIKTVDN-----------LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNT 480 (514)
T ss_pred EEeccchhhccCCCCchhhhhh-----------hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCC
Confidence 9999743 356666665 6788999999999999998875 56799988887766555554332
Q ss_pred --CceeEEeecCCCCCeEEEEecCCeEEEEEcC
Q 004581 564 --ASVTAAGFPPQNNNVLIITTSSNQVYVFDVE 594 (744)
Q Consensus 564 --~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~ 594 (744)
+.|+||+|+| .+.+||+|..+|.|.+|.+.
T Consensus 481 ~vg~vtc~aFSP-~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 481 KVGHVTCMAFSP-NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cccceEEEEecC-CCceEEeecCCCceeeEeec
Confidence 6899999999 99999999999999999874
No 138
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.92 E-value=3.4e-21 Score=187.86 Aligned_cols=260 Identities=13% Similarity=0.137 Sum_probs=190.8
Q ss_pred CeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEE
Q 004581 107 GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSL 186 (744)
Q Consensus 107 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 186 (744)
..+.+||...|..+ .++++|...|.|++|+.||+.+|+|+.|..|.+|+-+- +-+.++ .|...|.|+
T Consensus 33 ~rlliyD~ndG~ll---qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkY---------SH~D~IQCM 99 (1081)
T KOG1538|consen 33 SRLLVYDTSDGTLL---QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKY---------SHNDAIQCM 99 (1081)
T ss_pred CEEEEEeCCCcccc---cccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceeee---------ccCCeeeEe
Confidence 47999999988888 89999999999999999999999999999999998542 223333 599999999
Q ss_pred EEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccc
Q 004581 187 LSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEV 266 (744)
Q Consensus 187 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 266 (744)
.|+|-...+..++-...-+|..+... +...+ ....+.+.+|..||++++.|-.||+|.+-+......
T Consensus 100 sFNP~~h~LasCsLsdFglWS~~qK~-V~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek----------- 166 (1081)
T KOG1538|consen 100 SFNPITHQLASCSLSDFGLWSPEQKS-VSKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK----------- 166 (1081)
T ss_pred ecCchHHHhhhcchhhccccChhhhh-HHhhh-hheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc-----------
Confidence 99998844444445567889876433 33333 256789999999999999999999999986554431
Q ss_pred cceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccC
Q 004581 267 IKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT 346 (744)
Q Consensus 267 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~ 346 (744)
..+..--+...+|.++++++ ... ....+.++......++.+|.+....
T Consensus 167 ----~~I~Rpgg~Nspiwsi~~~p---------~sg-------------------~G~~di~aV~DW~qTLSFy~LsG~~ 214 (1081)
T KOG1538|consen 167 ----VKIERPGGSNSPIWSICWNP---------SSG-------------------EGRNDILAVADWGQTLSFYQLSGKQ 214 (1081)
T ss_pred ----eEEeCCCCCCCCceEEEecC---------CCC-------------------CCccceEEEEeccceeEEEEeccee
Confidence 11222345778899999973 221 1122467777777777777665311
Q ss_pred CCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEE
Q 004581 347 KFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTI 426 (744)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 426 (744)
.-.. . .-.....|+.+
T Consensus 215 Igk~------------------------------------------------------------r----~L~FdP~CisY 230 (1081)
T KOG1538|consen 215 IGKD------------------------------------------------------------R----ALNFDPCCISY 230 (1081)
T ss_pred eccc------------------------------------------------------------c----cCCCCchhhee
Confidence 0000 0 00134568889
Q ss_pred cCCCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEcc
Q 004581 427 SNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS 497 (744)
Q Consensus 427 s~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~ 497 (744)
-++|.++.. |+++.+++|... ++.+ ..+......|..++..|++++++.|+.||+|..|++.
T Consensus 231 f~NGEy~LiGGsdk~L~~fTR~----GvrL-----GTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 231 FTNGEYILLGGSDKQLSLFTRD----GVRL-----GTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ccCCcEEEEccCCCceEEEeec----CeEE-----eeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 999999888 589999998754 4443 4444555599999999999999999999999999873
No 139
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=1.4e-23 Score=197.51 Aligned_cols=268 Identities=20% Similarity=0.288 Sum_probs=215.4
Q ss_pred CCCCeeEEecCCCeEEEEEccC---CceeEEeecc--CcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcC
Q 004581 3 LPGGRLFSSSIDGSVSEWDLYD---LKQKIVLQSI--DFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHET 77 (744)
Q Consensus 3 ~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~h--~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (744)
-+..++++||. |-|+|||+.. ..++..|... ..-|.++.+.|||
T Consensus 429 ~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdg------------------------------ 477 (705)
T KOG0639|consen 429 NPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDG------------------------------ 477 (705)
T ss_pred CCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCC------------------------------
Confidence 34556777775 6799999964 2334444433 4678888888988
Q ss_pred ccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 004581 78 SESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSW 157 (744)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vw 157 (744)
+.|++|++-.++.|||+..... .....+..-.-...+++.|||.+.+++++.||.|.||
T Consensus 478 --------------------rtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDakvcFsccsdGnI~vw 536 (705)
T KOG0639|consen 478 --------------------RTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVW 536 (705)
T ss_pred --------------------ceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEE
Confidence 6899999999999999974432 2224455555578889999999999999999999999
Q ss_pred EccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEE
Q 004581 158 DAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRV 236 (744)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 236 (744)
|+.+...++.+. +|...+.||..++|| .|-+|+-|++|+.||+++++.++.... ...|.++.++|++.+|
T Consensus 537 DLhnq~~Vrqfq--------GhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWl 607 (705)
T KOG0639|consen 537 DLHNQTLVRQFQ--------GHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWL 607 (705)
T ss_pred Ecccceeeeccc--------CCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccce
Confidence 999999999998 899999999999999 899999999999999999988877664 6789999999999999
Q ss_pred EeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcccc
Q 004581 237 FSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFS 316 (744)
Q Consensus 237 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (744)
++|-.++.+.+......+ ...+..|...|.++.|+ +-|+
T Consensus 608 avGMens~vevlh~skp~------------------kyqlhlheScVLSlKFa---------~cGk-------------- 646 (705)
T KOG0639|consen 608 AVGMENSNVEVLHTSKPE------------------KYQLHLHESCVLSLKFA---------YCGK-------------- 646 (705)
T ss_pred eeecccCcEEEEecCCcc------------------ceeecccccEEEEEEec---------ccCc--------------
Confidence 999999999988877655 35667889999999997 5555
Q ss_pred ccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcc
Q 004581 317 YHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVE 396 (744)
Q Consensus 317 ~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~ 396 (744)
.+++.+.|..+..|...-...+
T Consensus 647 ----------wfvStGkDnlLnawrtPyGasi------------------------------------------------ 668 (705)
T KOG0639|consen 647 ----------WFVSTGKDNLLNAWRTPYGASI------------------------------------------------ 668 (705)
T ss_pred ----------eeeecCchhhhhhccCccccce------------------------------------------------
Confidence 8999999999999976532211
Q ss_pred cCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCceEEEEe
Q 004581 397 SRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFEL 446 (744)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~ 446 (744)
+..+....|.++.+|.|.++|++| .+.+..+|.+
T Consensus 669 ----------------FqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 669 ----------------FQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ----------------eeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 122344778889999999999996 5557777765
No 140
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=4.6e-22 Score=201.63 Aligned_cols=273 Identities=15% Similarity=0.222 Sum_probs=212.8
Q ss_pred eccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCC
Q 004581 218 SFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDP 297 (744)
Q Consensus 218 ~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 297 (744)
.+|....+.++|.|+|++|++++.||.|++|+....... ...+..+...|.+++..
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~----------------P~ti~~~g~~v~~ia~~-------- 65 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE----------------PETIDISGELVSSIACY-------- 65 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC----------------CchhhccCceeEEEeec--------
Confidence 468888999999999999999999999999987765210 11223366777777762
Q ss_pred CCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEE
Q 004581 298 LPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLL 377 (744)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 377 (744)
...|++|+.+++|.+|....+..-.
T Consensus 66 ---------------------------s~~f~~~s~~~tv~~y~fps~~~~~---------------------------- 90 (933)
T KOG1274|consen 66 ---------------------------SNHFLTGSEQNTVLRYKFPSGEEDT---------------------------- 90 (933)
T ss_pred ---------------------------ccceEEeeccceEEEeeCCCCCccc----------------------------
Confidence 2289999999999999887543110
Q ss_pred EEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCCCCceE
Q 004581 378 VQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEW 456 (744)
Q Consensus 378 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~~~ 456 (744)
.+.++. -++++++++.+|+++|.| +|-.|++-++.. ....
T Consensus 91 -------------------------------iL~Rft----lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D--~s~~-- 131 (933)
T KOG1274|consen 91 -------------------------------ILARFT----LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD--SSQE-- 131 (933)
T ss_pred -------------------------------eeeeee----ccceEEEEecCCcEEEeecCceeEEEEeccc--cchh--
Confidence 233333 568899999999999995 777888888865 2222
Q ss_pred EeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEE
Q 004581 457 IINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLA 536 (744)
Q Consensus 457 ~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~la 536 (744)
..+.+|..+|.++.|+|.+++||+.+-||.|++||++++.+..++.+.....+ ......++.++|+|+|..||
T Consensus 132 ----~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~---~~~s~i~~~~aW~Pk~g~la 204 (933)
T KOG1274|consen 132 ----KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNE---FILSRICTRLAWHPKGGTLA 204 (933)
T ss_pred ----eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccc---ccccceeeeeeecCCCCeEE
Confidence 45678888999999999999999999999999999999998888776321110 01255678899999988899
Q ss_pred EEeCCCcEEEEECCCcceEEEEecCCC-CceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCccccccc
Q 004581 537 AVNCFGDVYIFNLEIQRQHWFISRLEG-ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQE 615 (744)
Q Consensus 537 s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~ 615 (744)
....|+.|.+|+.++......+...+. ..+..++|+| .|+|||+++.||.|.|||+++-+. ..
T Consensus 205 ~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-nG~YiAAs~~~g~I~vWnv~t~~~---------------~~ 268 (933)
T KOG1274|consen 205 VPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-NGKYIAASTLDGQILVWNVDTHER---------------HE 268 (933)
T ss_pred eeccCCeEEEEccCCceeheeecccccccceEEEEEcC-CCcEEeeeccCCcEEEEecccchh---------------cc
Confidence 999999999999999988777654433 4499999999 999999999999999999998531 22
Q ss_pred CCCceEEEEeCCCCCC
Q 004581 616 FPGEVIGLSFSPSPSS 631 (744)
Q Consensus 616 ~~~~v~~i~fspdg~~ 631 (744)
....|.+++|-|+++.
T Consensus 269 ~~~~Vc~~aw~p~~n~ 284 (933)
T KOG1274|consen 269 FKRAVCCEAWKPNANA 284 (933)
T ss_pred ccceeEEEecCCCCCe
Confidence 3478999999998653
No 141
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.91 E-value=4.9e-22 Score=182.84 Aligned_cols=331 Identities=22% Similarity=0.233 Sum_probs=215.2
Q ss_pred CeEEEEecCCeEEEEEecCC------CceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccC-------C--
Q 004581 98 RRVALACDDGCVRIYRITDS------DELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL-------G-- 162 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~------~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~-------~-- 162 (744)
+.||+|+.|..|+||.+..+ ..+.+...|.+|...|+++.|+|+|+.||+|+.+|.|.+|.... .
T Consensus 27 ~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~ 106 (434)
T KOG1009|consen 27 NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEA 106 (434)
T ss_pred cceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchh
Confidence 38999999999999998722 25677789999999999999999999999999999999998651 0
Q ss_pred ---ceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEe
Q 004581 163 ---YEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFS 238 (744)
Q Consensus 163 ---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~ 238 (744)
++.+.... ...+|...|+.++|+|++ .+++++.|+.+++||+..|+.++.+..|...|..++|.|-++++++
T Consensus 107 ~~~ke~w~v~k----~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s 182 (434)
T KOG1009|consen 107 DLNKEKWVVKK----VLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVAS 182 (434)
T ss_pred hhCccceEEEE----EecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhh
Confidence 10011000 112689999999999999 8999999999999999999999999999999999999999999999
Q ss_pred ecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcccccc
Q 004581 239 TGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYH 318 (744)
Q Consensus 239 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (744)
-+.|...+.+.+.... ....|...+.-...
T Consensus 183 ~s~dr~~~~~~~~~~~--------------------~~~~~~~~~m~~~~------------------------------ 212 (434)
T KOG1009|consen 183 KSSDRHPEGFSAKLKQ--------------------VIKRHGLDIMPAKA------------------------------ 212 (434)
T ss_pred hccCcccceeeeeeee--------------------eeeeeeeeEeeecc------------------------------
Confidence 9999977777765533 11222211110000
Q ss_pred ccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccC
Q 004581 319 KWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESR 398 (744)
Q Consensus 319 ~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~ 398 (744)
--.......+++.-++.. .....++|+|+|.++++..+.+++-.-...+
T Consensus 213 ----------~~~~e~~s~rLfhDeTlk----------------sFFrRlsfTPdG~llvtPag~~~~g~~~~~n----- 261 (434)
T KOG1009|consen 213 ----------FNEREGKSTRLFHDETLK----------------SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRN----- 261 (434)
T ss_pred ----------cCCCCcceeeeeecCchh----------------hhhhhcccCCCCcEEEcccceeeeCCceeec-----
Confidence 000112234454444333 3455778999999999877654431111000
Q ss_pred CCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeC
Q 004581 399 SSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYD 478 (744)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd 478 (744)
..+.+..+.-....+..-+|.--.+++... -..|++.. +... .. +---|-
T Consensus 262 ----------~tYvfsrk~l~rP~~~lp~~~k~~lavr~~--pVy~elrp--------------~~~~--~~--~~~lpy 311 (434)
T KOG1009|consen 262 ----------TSYVFSRKDLKRPAARLPSPKKPALAVRFS--PVYYELRP--------------LSSE--KF--LFVLPY 311 (434)
T ss_pred ----------eeEeeccccccCceeecCCCCcceEEEEee--eeEEEecc--------------cccc--cc--cccccc
Confidence 011111110000000000111111222111 11222221 0000 00 111233
Q ss_pred CCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcce
Q 004581 479 SSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ 554 (744)
Q Consensus 479 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~ 554 (744)
+-.+|+++.+ .|+|||.++..++...... |-..|+.++||+||.+|+..|.||...+-.++..++
T Consensus 312 rlvfaiAt~~-svyvydtq~~~P~~~v~ni----------hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 312 RLVFAIATKN-SVYVYDTQTLEPLAVVDNI----------HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred ceEEEEeecc-eEEEeccccccceEEEeee----------eeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 4455666654 6999999988888777664 889999999999999999999999888777776654
No 142
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.4e-24 Score=213.59 Aligned_cols=251 Identities=19% Similarity=0.286 Sum_probs=214.4
Q ss_pred eEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcc
Q 004581 8 LFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSD 87 (744)
Q Consensus 8 l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (744)
++..-..-.+++||... +..|...|.|+.+-..+
T Consensus 7 ~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~---------------------------------------- 40 (825)
T KOG0267|consen 7 LMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSS---------------------------------------- 40 (825)
T ss_pred cceeeeeeccccccchh------hhhhhhhhceeeeeccc----------------------------------------
Confidence 45555666777887543 45688888888875554
Q ss_pred cccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEE
Q 004581 88 ELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYR 167 (744)
Q Consensus 88 ~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~ 167 (744)
+.+++|+.|..+-+|.+.....+ ..|.+|+.+|.|+.|+++..+|++|+.+|+|++||++.++.++.
T Consensus 41 ----------r~~~~Gg~~~k~~L~~i~kp~~i---~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrt 107 (825)
T KOG0267|consen 41 ----------RSLVTGGEDEKVNLWAIGKPNAI---TSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRT 107 (825)
T ss_pred ----------eeeccCCCceeeccccccCCchh---heeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhh
Confidence 58999999999999999644444 56899999999999999999999999999999999999999998
Q ss_pred EEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEE
Q 004581 168 ITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVI 246 (744)
Q Consensus 168 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~ 246 (744)
+. +|...+.++.|+|-+ +.++|+.|+.+++||++...+...+.+|...|.+++|+|+|++++.++.|.+++
T Consensus 108 Lt--------gh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvk 179 (825)
T KOG0267|consen 108 LT--------GHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVK 179 (825)
T ss_pred hh--------ccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceee
Confidence 88 799999999999999 889999999999999998889999999999999999999999999999999999
Q ss_pred EEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCc
Q 004581 247 LYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVP 326 (744)
Q Consensus 247 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 326 (744)
+||+..+.+ ...+..|...+.++.+. | ..-
T Consensus 180 i~d~~agk~-----------------~~ef~~~e~~v~sle~h---------p------------------------~e~ 209 (825)
T KOG0267|consen 180 IWDLTAGKL-----------------SKEFKSHEGKVQSLEFH---------P------------------------LEV 209 (825)
T ss_pred eeccccccc-----------------ccccccccccccccccC---------c------------------------hhh
Confidence 999988874 66778899999998874 2 333
Q ss_pred EEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCC
Q 004581 327 MLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC 382 (744)
Q Consensus 327 ~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 382 (744)
++++|+.|+++++||++++..+..... ....+.+.+|+|++..+.++..
T Consensus 210 Lla~Gs~d~tv~f~dletfe~I~s~~~-------~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 210 LLAPGSSDRTVRFWDLETFEVISSGKP-------ETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred hhccCCCCceeeeeccceeEEeeccCC-------ccCCceeeeecCCceeeecCch
Confidence 899999999999999998776543321 2467889999999999888754
No 143
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=1.5e-21 Score=171.75 Aligned_cols=313 Identities=18% Similarity=0.227 Sum_probs=227.8
Q ss_pred ccCccCcEEEEEEec-CCCEEEEEeCCCeEEEEEccCCce------EEEEEe-cCCCCCCCCceeEEEEEEecCC--eEE
Q 004581 126 LPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAKLGYE------IYRITV-GLGGLGSGPELCIWSLLSLRCG--TLV 195 (744)
Q Consensus 126 ~~~h~~~V~~~~~s~-dg~~l~t~~~dg~i~vwd~~~~~~------~~~~~~-~~~~~~~~~~~~v~~~~~~~~~--~l~ 195 (744)
...|.+.|+++...+ .|+++++|+.||.|.+||++.... +..-.. -......+|...|.++.|-|-. .+.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 346889999999977 689999999999999999976431 111000 0123345799999999999844 899
Q ss_pred EEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCC---CCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEE
Q 004581 196 SADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPS---HNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIY 272 (744)
Q Consensus 196 s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 272 (744)
+++.|.++++||..+-+....++. .+.|.+-+++|- ..++++|..|-.|++-|+..+..
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~----------------- 180 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF----------------- 180 (397)
T ss_pred cccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc-----------------
Confidence 999999999999999888877775 678888888884 34778888899999999999884
Q ss_pred EeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcc
Q 004581 273 VGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHE 352 (744)
Q Consensus 273 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~ 352 (744)
...+.+|...|.++.|+ |... | .|++|+.||.|++||++...
T Consensus 181 sH~LsGHr~~vlaV~Ws---------p~~e-----------------~------vLatgsaDg~irlWDiRras------ 222 (397)
T KOG4283|consen 181 SHTLSGHRDGVLAVEWS---------PSSE-----------------W------VLATGSADGAIRLWDIRRAS------ 222 (397)
T ss_pred eeeeccccCceEEEEec---------cCce-----------------e------EEEecCCCceEEEEEeeccc------
Confidence 78899999999999997 3332 2 79999999999999997411
Q ss_pred cCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCE
Q 004581 353 ICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGML 432 (744)
Q Consensus 353 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 432 (744)
+ ++..+.
T Consensus 223 -----------------------------g--------------------------cf~~lD------------------ 229 (397)
T KOG4283|consen 223 -----------------------------G--------------------------CFRVLD------------------ 229 (397)
T ss_pred -----------------------------c--------------------------eeEEee------------------
Confidence 0 011110
Q ss_pred EEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCcee-eeeccCccc
Q 004581 433 FAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELL-HTFTPCREE 511 (744)
Q Consensus 433 la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~-~~~~~~~~~ 511 (744)
..+ +.+.-.+ ..-+.|...+..++|+.|+.++++.+.|..+++|+..+|+-. +.+-....
T Consensus 230 -------------~hn---~k~~p~~--~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~- 290 (397)
T KOG4283|consen 230 -------------QHN---TKRPPIL--KTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIH- 290 (397)
T ss_pred -------------ccc---CccCccc--cccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccc-
Confidence 000 1110001 234567778999999999999999999999999999877532 21111000
Q ss_pred ccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEE
Q 004581 512 HDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVF 591 (744)
Q Consensus 512 ~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vw 591 (744)
+ ...| -.+. +. +.+...++---.++.+.++++-.+..+..+.. |...|.+.++.| +-+.+.++..|+.|..|
T Consensus 291 --n-~~~~-~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~-h~k~i~c~~~~~-~fq~~~tg~~d~ni~~w 362 (397)
T KOG4283|consen 291 --N-QTTS-FAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLST-HLKRINCAAYRP-DFEQCFTGDMNGNIYMW 362 (397)
T ss_pred --c-cccc-ceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeec-ccceeeEEeecC-chhhhhccccCCccccc
Confidence 0 0001 1111 22 33444555555668899999999988887766 467899999999 99999999999999999
Q ss_pred EcC
Q 004581 592 DVE 594 (744)
Q Consensus 592 d~~ 594 (744)
-..
T Consensus 363 ~p~ 365 (397)
T KOG4283|consen 363 SPA 365 (397)
T ss_pred ccc
Confidence 874
No 144
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.3e-24 Score=212.11 Aligned_cols=206 Identities=20% Similarity=0.283 Sum_probs=189.4
Q ss_pred CeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCC
Q 004581 6 GRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD 85 (744)
Q Consensus 6 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (744)
..+++|+.|..+-+|.+.....+..|.+|..+|.|+.|+++.
T Consensus 41 r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E-------------------------------------- 82 (825)
T KOG0267|consen 41 RSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSE-------------------------------------- 82 (825)
T ss_pred eeeccCCCceeeccccccCCchhheeeccCCcceeeecCcch--------------------------------------
Confidence 447889999999999998877788899999999999999998
Q ss_pred cccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceE
Q 004581 86 SDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 165 (744)
Q Consensus 86 ~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~ 165 (744)
.+|++|+.+|+|++||++..+.+ ++|.+|...+.++.|+|-+.+.|+|+.|+.+++||.+...+.
T Consensus 83 ------------~LlaagsasgtiK~wDleeAk~v---rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~ 147 (825)
T KOG0267|consen 83 ------------RLLAAGSASGTIKVWDLEEAKIV---RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCS 147 (825)
T ss_pred ------------hhhcccccCCceeeeehhhhhhh---hhhhccccCcceeeeccceEEeccccccccceehhhhccCce
Confidence 58999999999999999977777 899999999999999999999999999999999999988889
Q ss_pred EEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCe
Q 004581 166 YRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQ 244 (744)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~ 244 (744)
+.+. +|...|..+.|+|+| ++++|+.|.+++|||+..|+.+..|..|.+.+..+.|+|..-++++|+.|++
T Consensus 148 ~~~~--------s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t 219 (825)
T KOG0267|consen 148 HTYK--------SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT 219 (825)
T ss_pred eeec--------CCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCce
Confidence 8887 799999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeee
Q 004581 245 VILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA 289 (744)
Q Consensus 245 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 289 (744)
+++||+++-. .+.........|++++|.
T Consensus 220 v~f~dletfe-----------------~I~s~~~~~~~v~~~~fn 247 (825)
T KOG0267|consen 220 VRFWDLETFE-----------------VISSGKPETDGVRSLAFN 247 (825)
T ss_pred eeeeccceeE-----------------EeeccCCccCCceeeeec
Confidence 9999998644 355556668889999998
No 145
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.2e-21 Score=172.42 Aligned_cols=291 Identities=16% Similarity=0.154 Sum_probs=202.4
Q ss_pred EEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCc
Q 004581 133 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHG 211 (744)
Q Consensus 133 V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~ 211 (744)
-.|+.|++.|.+||+|+.||.|.|||+.|-..-+.+. +|..+|.+++|++|| .|++++.|..|.+||+..|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~ls--------aH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g 97 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLS--------AHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG 97 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhh--------ccccceeEEEecCCCCEeeeecCCceeEEEeccCC
Confidence 7899999999999999999999999999887666665 799999999999999 8999999999999999999
Q ss_pred ceEEEeeccccceeEEEEcCCCCEEEe-ecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeec
Q 004581 212 TLLQAHSFHKGDVNALAAAPSHNRVFS-TGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAV 290 (744)
Q Consensus 212 ~~~~~~~~h~~~v~~l~~~~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 290 (744)
.+++.+.. .++|+...|+|.....+. .-.+..-.+-++.... . ..+...
T Consensus 98 s~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~-------------------h---------~~Lp~d- 147 (405)
T KOG1273|consen 98 SPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK-------------------H---------SVLPKD- 147 (405)
T ss_pred CceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCc-------------------e---------eeccCC-
Confidence 99999986 789999999996543333 2233333333333211 0 001110
Q ss_pred cCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceee
Q 004581 291 PISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIF 370 (744)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 370 (744)
+++...... .+....+.+.++++|...|.+.+++..+.+..
T Consensus 148 --------~d~dln~sa---------s~~~fdr~g~yIitGtsKGkllv~~a~t~e~v---------------------- 188 (405)
T KOG1273|consen 148 --------DDGDLNSSA---------SHGVFDRRGKYIITGTSKGKLLVYDAETLECV---------------------- 188 (405)
T ss_pred --------Ccccccccc---------ccccccCCCCEEEEecCcceEEEEecchheee----------------------
Confidence 111100000 00011345668999999999999988764311
Q ss_pred cCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCceEEEEeecC
Q 004581 371 SHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKG 449 (744)
Q Consensus 371 s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~~~ 449 (744)
..++......|..+.++..|+++++ ++|..||.|++..-
T Consensus 189 ----------------------------------------as~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di 228 (405)
T KOG1273|consen 189 ----------------------------------------ASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDI 228 (405)
T ss_pred ----------------------------------------eeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhh
Confidence 1111111255777889999999999 69999999998731
Q ss_pred CCCCceEEee-eccCCccc--ccccEEEEeeCCCEEEEEeC-CCcEEEEEccCCceeeeeccCcccccccCCCCCCceEE
Q 004581 450 KVGQGEWIIN-KRQLPRKL--QFAHSMIFSYDSSQLIIAGH-DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITK 525 (744)
Q Consensus 450 ~~~~~~~~~~-~~~~~~~~--~~v~~i~~spd~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 525 (744)
....+--.++ ..++.... ..-.+++||.||.|++.++. ...++||.-..|.+++.+.+. .......
T Consensus 229 ~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~----------kgE~l~D 298 (405)
T KOG1273|consen 229 DDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGT----------KGEELLD 298 (405)
T ss_pred cccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCC----------chhheee
Confidence 1110000000 01111111 14567899999999988875 568999999999999999983 1255778
Q ss_pred EEECCCCCEEEEEeCCCcEEEEECCC
Q 004581 526 MFTSSDGQWLAAVNCFGDVYIFNLEI 551 (744)
Q Consensus 526 l~~spdg~~las~~~dg~i~iwd~~~ 551 (744)
+.|.|-...+++. ..|.|+||....
T Consensus 299 V~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 299 VNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred cccccceeeeeec-cCCceEEEEeec
Confidence 9999998888887 788999998543
No 146
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=4.9e-21 Score=169.79 Aligned_cols=277 Identities=18% Similarity=0.245 Sum_probs=201.4
Q ss_pred CCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCC----cceEEEeeccccceeEEEEcC--CCCEEEeecCCCeEEEEE
Q 004581 177 SGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH----GTLLQAHSFHKGDVNALAAAP--SHNRVFSTGSDGQVILYK 249 (744)
Q Consensus 177 ~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~----~~~~~~~~~h~~~v~~l~~~~--~~~~l~~~~~dg~i~iw~ 249 (744)
.+|...|.++.|.+-| ++++++.|++|+|||.+. ..+....+.|.+.|..+.|.+ -|+.+++++.|+++.+|.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 3789999999999999 999999999999999654 345677889999999999976 379999999999999998
Q ss_pred cccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEE
Q 004581 250 ASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLI 329 (744)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~ 329 (744)
-.... ......+|.....+......|..+.|. |.. -+-.|+
T Consensus 90 E~~~~--------~~~~~~~Wv~~ttl~DsrssV~DV~Fa---------P~h----------------------lGLklA 130 (361)
T KOG2445|consen 90 EQEKS--------EEAHGRRWVRRTTLVDSRSSVTDVKFA---------PKH----------------------LGLKLA 130 (361)
T ss_pred ecccc--------cccccceeEEEEEeecCCcceeEEEec---------chh----------------------cceEEE
Confidence 64322 123446899999999999999999997 322 122799
Q ss_pred EecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcce
Q 004581 330 SAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSL 409 (744)
Q Consensus 330 s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 409 (744)
+++.||.||+|+......+.. |.+...-. .
T Consensus 131 ~~~aDG~lRIYEA~dp~nLs~------------------------------------W~Lq~Ei~--------------~ 160 (361)
T KOG2445|consen 131 AASADGILRIYEAPDPMNLSQ------------------------------------WTLQHEIQ--------------N 160 (361)
T ss_pred EeccCcEEEEEecCCcccccc------------------------------------chhhhhhh--------------h
Confidence 999999999999875332221 11110000 0
Q ss_pred EEEEEecCCCCeEEEEEcCCC---CEEEEEcCC------ceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeC--
Q 004581 410 LVQVKSKASRKIICSTISNSG---MLFAYSDHV------KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYD-- 478 (744)
Q Consensus 410 ~~~~~~~~~~~i~~~~~s~~g---~~la~~~~~------~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd-- 478 (744)
+..-...+.....|+.|+|.. .+||+|.+. .++||.... ++.+ | ....+++++..+|+.++|.|+
T Consensus 161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e--~~rK-w-~kva~L~d~~dpI~di~wAPn~G 236 (361)
T KOG2445|consen 161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE--NGRK-W-LKVAELPDHTDPIRDISWAPNIG 236 (361)
T ss_pred ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC--Ccce-e-eeehhcCCCCCcceeeeeccccC
Confidence 000001223556777887643 678888777 899999875 3323 2 223667899999999999995
Q ss_pred --CCEEEEEeCCCcEEEEEccCCc------------eeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcE
Q 004581 479 --SSQLIIAGHDRRIYVVDVSSSE------------LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDV 544 (744)
Q Consensus 479 --~~~l~~~~~dg~i~v~d~~~~~------------~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i 544 (744)
-..||+++.|| |+||.+.... .+..+.. ..-.+...|.+.|..+.|+-.|..|++.+.||.|
T Consensus 237 r~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v---~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~V 312 (361)
T KOG2445|consen 237 RSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPV---EKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCV 312 (361)
T ss_pred CceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccce---EEeeeccCCCCceEEEEEeeeeeEEeecCCCcee
Confidence 34789999999 9999986311 0000000 0011234599999999999999999999999999
Q ss_pred EEEECC
Q 004581 545 YIFNLE 550 (744)
Q Consensus 545 ~iwd~~ 550 (744)
++|...
T Consensus 313 RLWkan 318 (361)
T KOG2445|consen 313 RLWKAN 318 (361)
T ss_pred eehhhh
Confidence 999764
No 147
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.90 E-value=2.6e-21 Score=173.09 Aligned_cols=148 Identities=20% Similarity=0.240 Sum_probs=125.4
Q ss_pred CeEEEEecCCeEEEEEecCCCceeEeeccc--CccCcEEEEEEecCC----CEEEEEeCCCeEEEEEccCCceEEEEEec
Q 004581 98 RRVALACDDGCVRIYRITDSDELIYHRSLP--RVSGRVLSVTWSADG----NMLYSGSSDGYIRSWDAKLGYEIYRITVG 171 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~V~~~~~s~dg----~~l~t~~~dg~i~vwd~~~~~~~~~~~~~ 171 (744)
+.+|+.+. +.+.+|+......+...+... .|......++|+-|- .+||.|+.-|.|+|.|+.++++...+.
T Consensus 56 ~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~-- 132 (385)
T KOG1034|consen 56 QVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYR-- 132 (385)
T ss_pred ceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcccee--
Confidence 35666655 578999987544333223332 477888999998653 478999999999999999999999998
Q ss_pred CCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcceEEEe---eccccceeEEEEcCCCCEEEeecCCCeEE
Q 004581 172 LGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAH---SFHKGDVNALAAAPSHNRVFSTGSDGQVI 246 (744)
Q Consensus 172 ~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~l~~~~~dg~i~ 246 (744)
+|...|..+.|.|+. ++++++.|..|++|++++..++..+ .+|...|.++.|+++|.+|+++|.|.+++
T Consensus 133 ------ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk 206 (385)
T KOG1034|consen 133 ------GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLK 206 (385)
T ss_pred ------ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEE
Confidence 799999999999998 8999999999999999999999876 57999999999999999999999999999
Q ss_pred EEEcccCc
Q 004581 247 LYKASCES 254 (744)
Q Consensus 247 iw~~~~~~ 254 (744)
+|++...+
T Consensus 207 ~W~l~~~~ 214 (385)
T KOG1034|consen 207 LWRLNVKE 214 (385)
T ss_pred EEecChhH
Confidence 99998544
No 148
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2e-19 Score=182.48 Aligned_cols=426 Identities=16% Similarity=0.228 Sum_probs=285.5
Q ss_pred EEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCC---EEEEEeCCCeEEEEEccCCceEEEEEecCCCCC
Q 004581 100 VALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN---MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLG 176 (744)
Q Consensus 100 la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~---~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 176 (744)
...++.+..|.||...++++. +.+.+|..+++++.+.|... ++.+++.||.|++||...+..+..+........
T Consensus 30 ~l~~~~~~~V~VyS~~Tg~~i---~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~ 106 (792)
T KOG1963|consen 30 FLFLCTGNFVKVYSTATGECI---TSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHA 106 (792)
T ss_pred EEEEeeCCEEEEEecchHhhh---hhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeE
Confidence 334455679999999999888 79999999999999988654 677999999999999998888877654321100
Q ss_pred -------------------------------CCCcee-------------------EEEEEEecCCeEEEEcCCCCEEEE
Q 004581 177 -------------------------------SGPELC-------------------IWSLLSLRCGTLVSADSTGSVQFW 206 (744)
Q Consensus 177 -------------------------------~~~~~~-------------------v~~~~~~~~~~l~s~~~dg~i~vw 206 (744)
..+... -.++.+++.|.+.....+..+.+|
T Consensus 107 ~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~ 186 (792)
T KOG1963|consen 107 LVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIY 186 (792)
T ss_pred EEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEE
Confidence 000000 012233333333333344556777
Q ss_pred eCCCcceEEE----eeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCc
Q 004581 207 DSRHGTLLQA----HSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHD 282 (744)
Q Consensus 207 d~~~~~~~~~----~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 282 (744)
+..++..... -..|.-.++|.+++|+++++++|..||.|.+|.--...... . ....+.-|...
T Consensus 187 ~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~------------~-t~t~lHWH~~~ 253 (792)
T KOG1963|consen 187 FVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS------------E-TCTLLHWHHDE 253 (792)
T ss_pred EecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc------------c-cceEEEecccc
Confidence 7765441111 12366678999999999999999999999999754411100 0 13556778889
Q ss_pred ceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCcc
Q 004581 283 VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPI 362 (744)
Q Consensus 283 v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (744)
|.+++|+ ++|. +|++||..+.+.+|.+.+..+.
T Consensus 254 V~~L~fS---------~~G~------------------------~LlSGG~E~VLv~Wq~~T~~kq-------------- 286 (792)
T KOG1963|consen 254 VNSLSFS---------SDGA------------------------YLLSGGREGVLVLWQLETGKKQ-------------- 286 (792)
T ss_pred cceeEEe---------cCCc------------------------eEeecccceEEEEEeecCCCcc--------------
Confidence 9999998 6665 9999999999999998874411
Q ss_pred ccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCce
Q 004581 363 HLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKP 441 (744)
Q Consensus 363 ~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~v 441 (744)
.+-++ ...|..+.+|||+.+.+. ..|+.|
T Consensus 287 ----------------------------------------------fLPRL----gs~I~~i~vS~ds~~~sl~~~DNqI 316 (792)
T KOG1963|consen 287 ----------------------------------------------FLPRL----GSPILHIVVSPDSDLYSLVLEDNQI 316 (792)
T ss_pred ----------------------------------------------ccccc----CCeeEEEEEcCCCCeEEEEecCceE
Confidence 01111 266888889999988776 588888
Q ss_pred EEEEeecCCCCCceEEeeeccC------CcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCccccccc
Q 004581 442 SLFELKKGKVGQGEWIINKRQL------PRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDRE 515 (744)
Q Consensus 442 ~l~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~ 515 (744)
.+-....-..... +..... .+...-.+.++++|--+.++..+..|.|.+||+.+.+.++.+.....+....
T Consensus 317 ~li~~~dl~~k~t---Isgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~ 393 (792)
T KOG1963|consen 317 HLIKASDLEIKST---ISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDG 393 (792)
T ss_pred EEEeccchhhhhh---ccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCC
Confidence 8887743111111 111000 0112246678889977888888999999999998887777766543333333
Q ss_pred CCCCCCceEEEEECCCCCEEEEEeC--------CC--cEEEEECCCcc----eEEEEecCCCCceeEEeecCCCCC-eEE
Q 004581 516 IQPSEPPITKMFTSSDGQWLAAVNC--------FG--DVYIFNLEIQR----QHWFISRLEGASVTAAGFPPQNNN-VLI 580 (744)
Q Consensus 516 ~~~~~~~i~~l~~spdg~~las~~~--------dg--~i~iwd~~~~~----~~~~~~~~~~~~v~~l~~sp~~~~-~l~ 580 (744)
...+.-.+++++.+-.|.+++|... || .+++|-.+... +...+..+|+..+.+.+|.+.... .++
T Consensus 394 ~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~v 473 (792)
T KOG1963|consen 394 DVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCV 473 (792)
T ss_pred cceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeE
Confidence 3345667889999999999999742 33 57789776544 333455667755555555442333 899
Q ss_pred EEecCCeEEEEEcCC-----CccccccccccCCcccccccCCCceEEEEeCCCCCCcEEEEEcCceEEEEeCCC
Q 004581 581 ITTSSNQVYVFDVEA-----KQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGR 649 (744)
Q Consensus 581 ~~~~d~~v~vwd~~~-----~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~~~~~~~~~ 649 (744)
+++.||.+++|-+.+ .+-..|.|..... + |..++..++|+-|| ..+.+.-...+...|+..
T Consensus 474 ta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~s----y--~k~~i~a~~fs~dG--slla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 474 TASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGS----Y--HKTPITALCFSQDG--SLLAVSFDDTITIWDYDT 539 (792)
T ss_pred EeccCCeEEEEEEecccccCcCccceEEeeeec----c--ccCcccchhhcCCC--cEEEEecCCEEEEecCCC
Confidence 999999999999843 2344565554321 2 67899999999997 455555556677778765
No 149
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=7.9e-22 Score=179.54 Aligned_cols=193 Identities=20% Similarity=0.324 Sum_probs=161.3
Q ss_pred eeEEecCCCeEEEEEccC----------------CceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCC
Q 004581 7 RLFSSSIDGSVSEWDLYD----------------LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSN 70 (744)
Q Consensus 7 ~l~~~~~d~~i~iwd~~~----------------~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (744)
..++-+..|.|.|||+.. .+++.++.+|.+.=..++|||-..
T Consensus 167 ~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~---------------------- 224 (440)
T KOG0302|consen 167 LCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT---------------------- 224 (440)
T ss_pred eeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc----------------------
Confidence 356778999999999842 367888999999999999999431
Q ss_pred CCCCCcCccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCC-CEEEEEe
Q 004581 71 DSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADG-NMLYSGS 149 (744)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg-~~l~t~~ 149 (744)
..|++|..-+.|++|...++.-..-...|.+|+..|-.++|||.. ..|++|+
T Consensus 225 ---------------------------g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS 277 (440)
T KOG0302|consen 225 ---------------------------GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCS 277 (440)
T ss_pred ---------------------------cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeee
Confidence 378899888999999998765444446788999999999999964 5889999
Q ss_pred CCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCC---cceEEEeecccccee
Q 004581 150 SDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH---GTLLQAHSFHKGDVN 225 (744)
Q Consensus 150 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~---~~~~~~~~~h~~~v~ 225 (744)
.||+|+|||++.+.....+.. +.|.+.|..+.|+.+- +|++|+.||+++|||++. ++++.+++.|..+|+
T Consensus 278 ~DgsIrIWDiRs~~~~~~~~~------kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pIt 351 (440)
T KOG0302|consen 278 CDGSIRIWDIRSGPKKAAVST------KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPIT 351 (440)
T ss_pred cCceEEEEEecCCCccceeEe------eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCee
Confidence 999999999999844333332 1689999999999877 799999999999999985 788999999999999
Q ss_pred EEEEcCCC-CEEEeecCCCeEEEEEcccCc
Q 004581 226 ALAAAPSH-NRVFSTGSDGQVILYKASCES 254 (744)
Q Consensus 226 ~l~~~~~~-~~l~~~~~dg~i~iw~~~~~~ 254 (744)
++.|+|.. ..|+++|.|.+|.+||+.-..
T Consensus 352 sieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 352 SIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred EEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 99999954 567788899999999997654
No 150
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.1e-22 Score=202.09 Aligned_cols=232 Identities=17% Similarity=0.215 Sum_probs=189.5
Q ss_pred CCeeEEecCCCeEEEEEccC---CceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCC
Q 004581 5 GGRLFSSSIDGSVSEWDLYD---LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESE 81 (744)
Q Consensus 5 ~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (744)
..+||+++..|.|.+||+.. .+++..|..|...|.++.|++...
T Consensus 100 ~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep--------------------------------- 146 (839)
T KOG0269|consen 100 SNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEP--------------------------------- 146 (839)
T ss_pred hhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCc---------------------------------
Confidence 46799999999999999987 667778999999999999999874
Q ss_pred CCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEec-CCCEEEEEeCCCeEEEEEcc
Q 004581 82 NDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAK 160 (744)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~-dg~~l~t~~~dg~i~vwd~~ 160 (744)
.+|++|+.||+|++||+...+.. .++.+....|..|+|+| .+..++++.+.|.+++||++
T Consensus 147 ----------------~iliSGSQDg~vK~~DlR~~~S~---~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlR 207 (839)
T KOG0269|consen 147 ----------------NILISGSQDGTVKCWDLRSKKSK---STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLR 207 (839)
T ss_pred ----------------cEEEecCCCceEEEEeeeccccc---ccccccchhhhceeeccCCCceEEEecCCceEEEeecc
Confidence 48999999999999999877666 67778889999999998 46789999999999999997
Q ss_pred CCc-eEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeec-cccceeEEEEcCCCC-EE
Q 004581 161 LGY-EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSF-HKGDVNALAAAPSHN-RV 236 (744)
Q Consensus 161 ~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~-~l 236 (744)
... +...+. .|.++|.++.|+|++ +|++|+.|++|+|||+.+++.-..+.. ..++|.++.|-|+.. +|
T Consensus 208 qp~r~~~k~~--------AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hL 279 (839)
T KOG0269|consen 208 QPDRCEKKLT--------AHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHL 279 (839)
T ss_pred CchhHHHHhh--------cccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchh
Confidence 643 334444 799999999999988 999999999999999986544333322 257899999999865 45
Q ss_pred Eeec--CCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcc
Q 004581 237 FSTG--SDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPID 314 (744)
Q Consensus 237 ~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (744)
++++ .|-.|++||++..-. +-..+..|...+..++|.
T Consensus 280 Atcsmv~dtsV~VWDvrRPYI----------------P~~t~~eH~~~vt~i~W~------------------------- 318 (839)
T KOG0269|consen 280 ATCSMVVDTSVHVWDVRRPYI----------------PYATFLEHTDSVTGIAWD------------------------- 318 (839)
T ss_pred hhhhccccceEEEEeeccccc----------------cceeeeccCccccceecc-------------------------
Confidence 5554 388999999987542 456788999999999984
Q ss_pred ccccccccCCCcEEEEecCCCeEEEEecCc
Q 004581 315 FSYHKWAHLGVPMLISAGDDTKLFAYCANE 344 (744)
Q Consensus 315 ~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~ 344 (744)
+.+...+.+++.|+.+..-..+.
T Consensus 319 -------~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 319 -------SGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred -------CCCceeeEeecCccHHHHhhhhc
Confidence 22334889999999887655543
No 151
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=8.4e-21 Score=168.31 Aligned_cols=257 Identities=18% Similarity=0.247 Sum_probs=184.4
Q ss_pred CeEEEEecCCeEEEEEec-CCCceeEeecccCccCcEEEEEEec--CCCEEEEEeCCCeEEEEEccC------C-c--eE
Q 004581 98 RRVALACDDGCVRIYRIT-DSDELIYHRSLPRVSGRVLSVTWSA--DGNMLYSGSSDGYIRSWDAKL------G-Y--EI 165 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~-~~~~~~~~~~~~~h~~~V~~~~~s~--dg~~l~t~~~dg~i~vwd~~~------~-~--~~ 165 (744)
+++|+++.|++|+|||.. ..+...+....+.|.+.|..+.|.+ -|+.+|+++.|+++.||.-.. | + ..
T Consensus 26 RRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ 105 (361)
T KOG2445|consen 26 RRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRR 105 (361)
T ss_pred ceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEE
Confidence 799999999999999965 3445556678889999999999965 489999999999999997421 1 1 11
Q ss_pred EEEEecCCCCCCCCceeEEEEEEecCC---eEEEEcCCCCEEEEeCCCc------ceEEEee-------ccccceeEEEE
Q 004581 166 YRITVGLGGLGSGPELCIWSLLSLRCG---TLVSADSTGSVQFWDSRHG------TLLQAHS-------FHKGDVNALAA 229 (744)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~s~~~dg~i~vwd~~~~------~~~~~~~-------~h~~~v~~l~~ 229 (744)
..+. .....|+.+.|.|.. .|++++.||.+|||+...- ++...++ .+..+..|+.|
T Consensus 106 ttl~--------DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsW 177 (361)
T KOG2445|consen 106 TTLV--------DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSW 177 (361)
T ss_pred EEee--------cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEee
Confidence 2222 577899999999965 7999999999999987542 2223333 35667889999
Q ss_pred cCC---CCEEEeecCC-----CeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcc
Q 004581 230 APS---HNRVFSTGSD-----GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPED 301 (744)
Q Consensus 230 ~~~---~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~ 301 (744)
+|. ..+|++|+.+ +.++||...... .+|..+..+.+|+.+|++++|+|..+
T Consensus 178 n~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~-------------rKw~kva~L~d~~dpI~di~wAPn~G-------- 236 (361)
T KOG2445|consen 178 NPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG-------------RKWLKVAELPDHTDPIRDISWAPNIG-------- 236 (361)
T ss_pred ccccccCceEEEEcccCCccccceEEEEecCCc-------------ceeeeehhcCCCCCcceeeeeccccC--------
Confidence 974 4677777665 489999887654 68999999999999999999984332
Q ss_pred cccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeC
Q 004581 302 KVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS 381 (744)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 381 (744)
+ ...+|++++.|| |++|.+..............+ +..
T Consensus 237 r---------------------~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~---------------~~~------ 273 (361)
T KOG2445|consen 237 R---------------------SYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAP---------------DLM------ 273 (361)
T ss_pred C---------------------ceeeEEEeecCc-EEEEEEeeccchhhhhcccCC---------------CCc------
Confidence 1 223899999999 999998753211110000000 000
Q ss_pred CeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCceEEEEeec
Q 004581 382 CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKK 448 (744)
Q Consensus 382 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~~ 448 (744)
..+. . ........|+..+-.+.|+-.|..|++ |.||.||+|....
T Consensus 274 ~~l~---------------------v-~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 274 TDLP---------------------V-EKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred cccc---------------------e-EEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 0000 0 111112456678888999999999988 7999999998765
No 152
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=4.5e-21 Score=186.48 Aligned_cols=288 Identities=13% Similarity=0.181 Sum_probs=196.0
Q ss_pred ccCCeEEEEecCCeEEEEEecCCCcee----EeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEE--E
Q 004581 95 VEDRRVALACDDGCVRIYRITDSDELI----YHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYR--I 168 (744)
Q Consensus 95 ~~~~~la~~~~dg~i~iwd~~~~~~~~----~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~--~ 168 (744)
.....||.+.+||.|.++|.... ... ..+....|.+.|..+.|-|....|++++.|.++++||+++++.+.. +
T Consensus 62 n~eHiLavadE~G~i~l~dt~~~-~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~ 140 (720)
T KOG0321|consen 62 NKEHILAVADEDGGIILFDTKSI-VFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLN 140 (720)
T ss_pred CccceEEEecCCCceeeecchhh-hcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceee
Confidence 34569999999999999998621 111 1256668999999999999777899999999999999999888766 4
Q ss_pred EecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcc---------------------------eEEEeec
Q 004581 169 TVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGT---------------------------LLQAHSF 219 (744)
Q Consensus 169 ~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~---------------------------~~~~~~~ 219 (744)
. +|...|-+++|.+++ .|++|+.||.|.|||++-.. .+....+
T Consensus 141 ~--------GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 141 L--------GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred c--------ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 4 799999999999988 79999999999999986321 0111223
Q ss_pred cccceeE---EEEcCCCCEEEeecC-CCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeec---cCcceeeeeeccC
Q 004581 220 HKGDVNA---LAAAPSHNRVFSTGS-DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAH---THDVRALTVAVPI 292 (744)
Q Consensus 220 h~~~v~~---l~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~~~~~ 292 (744)
+...|.+ +.+..|..+|++++. |+.|++||++........+-. ....+..| ...+.++...
T Consensus 213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~---------~~~~~~t~skrs~G~~nL~lD--- 280 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPR---------GSDKYPTHSKRSVGQVNLILD--- 280 (720)
T ss_pred ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCC---------cccCccCcccceeeeEEEEec---
Confidence 4445555 556678889999887 999999999986532111000 01111222 2234444432
Q ss_pred CCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecC
Q 004581 293 SREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSH 372 (744)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 372 (744)
..+.+|...+.|+.|++|++.....-....
T Consensus 281 ------------------------------ssGt~L~AsCtD~sIy~ynm~s~s~sP~~~-------------------- 310 (720)
T KOG0321|consen 281 ------------------------------SSGTYLFASCTDNSIYFYNMRSLSISPVAE-------------------- 310 (720)
T ss_pred ------------------------------CCCCeEEEEecCCcEEEEeccccCcCchhh--------------------
Confidence 122355555559999999998643211000
Q ss_pred CeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCC
Q 004581 373 TSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKV 451 (744)
Q Consensus 373 ~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~ 451 (744)
..+. ... ..-..-..+|++.+++.+ .+...++|.+...+.
T Consensus 311 -------~sg~-------------------------~~~-------sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~ 351 (720)
T KOG0321|consen 311 -------FSGK-------------------------LNS-------SFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA 351 (720)
T ss_pred -------ccCc-------------------------ccc-------eeeeeeecCCCCceEeccCCCcceeeeeecCccC
Confidence 0000 000 011122478999999995 888999999876322
Q ss_pred CCceEEeeeccCCcccccccEEEEeeC-CCEEEEEeCCCcEEEEEccCC
Q 004581 452 GQGEWIINKRQLPRKLQFAHSMIFSYD-SSQLIIAGHDRRIYVVDVSSS 499 (744)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~v~~i~~spd-~~~l~~~~~dg~i~v~d~~~~ 499 (744)
.. ..+.+|...|++++|.|. -.-+++++.|..++||++..+
T Consensus 352 ~~-------~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 352 PP-------ALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred Ch-------hhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 22 446678889999999763 234556699999999999644
No 153
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=6.8e-21 Score=177.99 Aligned_cols=318 Identities=18% Similarity=0.181 Sum_probs=225.6
Q ss_pred EEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCe
Q 004581 20 WDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRR 99 (744)
Q Consensus 20 wd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (744)
.|+.+..+.....-+.++|++++|+|.... ++
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~------------------------------------------------~l 202 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENR------------------------------------------------KL 202 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcc------------------------------------------------eE
Confidence 455555666677788999999999998742 38
Q ss_pred EEEEecCCeEEEEEecCCC-ceeEeecccCccCcEEEEEEecCC-CEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCC
Q 004581 100 VALACDDGCVRIYRITDSD-ELIYHRSLPRVSGRVLSVTWSADG-NMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS 177 (744)
Q Consensus 100 la~~~~dg~i~iwd~~~~~-~~~~~~~~~~h~~~V~~~~~s~dg-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 177 (744)
+|+|..-|+|-+||+.+.+ ...-...+..|.++|.++.|+|.. ..+++.+.||+|++-|++++..-..+...
T Consensus 203 va~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~------ 276 (498)
T KOG4328|consen 203 VAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLD------ 276 (498)
T ss_pred EEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcC------
Confidence 9999999999999994222 222226677999999999999954 57889999999999999876543333310
Q ss_pred CCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcce-EEEeeccccceeEEEEcCCC-CEEEeecCCCeEEEEEcccCc
Q 004581 178 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTL-LQAHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCES 254 (744)
Q Consensus 178 ~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~-~~l~~~~~dg~i~iw~~~~~~ 254 (744)
.....+.++.|+.+. .++.++.-|...+||.+++.. ...+..|...|.+++++|.. .+|++++.|++.+|||++.-.
T Consensus 277 ~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~ 356 (498)
T KOG4328|consen 277 TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLR 356 (498)
T ss_pred ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhc
Confidence 355667788888777 778888888999999998544 67778899999999999965 578899999999999998754
Q ss_pred CCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCC
Q 004581 255 IGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD 334 (744)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d 334 (744)
.... ++-....|...|.+..|+ |.+. .|++.+.|
T Consensus 357 ~K~s-------------p~lst~~HrrsV~sAyFS---------Ps~g------------------------tl~TT~~D 390 (498)
T KOG4328|consen 357 GKAS-------------PFLSTLPHRRSVNSAYFS---------PSGG------------------------TLLTTCQD 390 (498)
T ss_pred CCCC-------------cceecccccceeeeeEEc---------CCCC------------------------ceEeeccC
Confidence 2100 133445788888888887 4443 58888888
Q ss_pred CeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEE
Q 004581 335 TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK 414 (744)
Q Consensus 335 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (744)
..|++||..-...... .+..+.
T Consensus 391 ~~IRv~dss~~sa~~~----------------------------------------------------------p~~~I~ 412 (498)
T KOG4328|consen 391 NEIRVFDSSCISAKDE----------------------------------------------------------PLGTIP 412 (498)
T ss_pred CceEEeecccccccCC----------------------------------------------------------ccceee
Confidence 8898888741110000 000000
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEE
Q 004581 415 SKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVV 494 (744)
Q Consensus 415 ~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~ 494 (744)
| + .....+. .....+|.||..++++|..-..|-|+
T Consensus 413 --H----------n--------------------------------~~t~Rwl-T~fKA~W~P~~~li~vg~~~r~IDv~ 447 (498)
T KOG4328|consen 413 --H----------N--------------------------------NRTGRWL-TPFKAAWDPDYNLIVVGRYPRPIDVF 447 (498)
T ss_pred --c----------c--------------------------------Ccccccc-cchhheeCCCccEEEEeccCcceeEE
Confidence 0 0 0000111 23345689999999999998899999
Q ss_pred EccCCceeeeeccCcccccccCCCCCCceEE-EEECCCCC-EEEEEeCCCcEEEEECC
Q 004581 495 DVSSSELLHTFTPCREEHDREIQPSEPPITK-MFTSSDGQ-WLAAVNCFGDVYIFNLE 550 (744)
Q Consensus 495 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~spdg~-~las~~~dg~i~iwd~~ 550 (744)
|-..++.+..+..+ ....|.+ ..|+|-+. ++|.++..|.|+||--+
T Consensus 448 ~~~~~q~v~el~~P----------~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 448 DGNGGQMVCELHDP----------ESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cCCCCEEeeeccCc----------cccccccceeecccccceeccCCccceEEEEecC
Confidence 98888877776542 3334544 46999888 55555678889988654
No 154
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.88 E-value=2.6e-20 Score=171.61 Aligned_cols=323 Identities=17% Similarity=0.225 Sum_probs=208.7
Q ss_pred CceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCc---------ceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEE
Q 004581 179 PELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHG---------TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVIL 247 (744)
Q Consensus 179 ~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~---------~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~i 247 (744)
...++.++.|.++. .+++|+.|..|++|-+..+ +.+..+..|...|+++.|+|+|+.|++|+.+|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 45678889998877 7999999999999987642 234567889999999999999999999999999999
Q ss_pred EEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcE
Q 004581 248 YKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPM 327 (744)
Q Consensus 248 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 327 (744)
|....-.....+. ........|.....+++|..+|..++|+ +++. .
T Consensus 92 Wk~~~~~~~~~d~-e~~~~ke~w~v~k~lr~h~~diydL~Ws---------~d~~------------------------~ 137 (434)
T KOG1009|consen 92 WKQGDVRIFDADT-EADLNKEKWVVKKVLRGHRDDIYDLAWS---------PDSN------------------------F 137 (434)
T ss_pred EEecCcCCccccc-hhhhCccceEEEEEecccccchhhhhcc---------CCCc------------------------e
Confidence 9877432211121 2233456799999999999999999997 6665 9
Q ss_pred EEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCe--EEEEEeeccCCcccCCCCCCCC
Q 004581 328 LISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCR--LDILSVRLENNVESRSSSGGHA 405 (744)
Q Consensus 328 l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~--i~i~~~~~~~~~~~~~~~~~~~ 405 (744)
+++++.|..+++||+.......... .+...+..++|.|-.+++++-+.. .+.+.
T Consensus 138 l~s~s~dns~~l~Dv~~G~l~~~~~-------dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~----------------- 193 (434)
T KOG1009|consen 138 LVSGSVDNSVRLWDVHAGQLLAILD-------DHEHYVQGVAWDPLNQYVASKSSDRHPEGFS----------------- 193 (434)
T ss_pred eeeeeccceEEEEEeccceeEeecc-------ccccccceeecchhhhhhhhhccCcccceee-----------------
Confidence 9999999999999998754332211 122344455555544444432110 00000
Q ss_pred CcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEE
Q 004581 406 STSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLII 484 (744)
Q Consensus 406 ~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~ 484 (744)
+. -...+.++.. ...++- +..+.-+.+++-. + ..++ .-...++|+|||.+|++
T Consensus 194 -------~~--~~~~~~~~~~---~~m~~~~~~~~e~~s~rLfh-D----------eTlk---sFFrRlsfTPdG~llvt 247 (434)
T KOG1009|consen 194 -------AK--LKQVIKRHGL---DIMPAKAFNEREGKSTRLFH-D----------ETLK---SFFRRLSFTPDGSLLVT 247 (434)
T ss_pred -------ee--eeeeeeeeee---eEeeecccCCCCcceeeeee-c----------Cchh---hhhhhcccCCCCcEEEc
Confidence 00 0011111111 000000 1111111111111 0 1111 14567889999999987
Q ss_pred EeC----CCc-----EEEEEccC-CceeeeeccCcccccccCCCCCCceEEEEECC------------------CCCEEE
Q 004581 485 AGH----DRR-----IYVVDVSS-SELLHTFTPCREEHDREIQPSEPPITKMFTSS------------------DGQWLA 536 (744)
Q Consensus 485 ~~~----dg~-----i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp------------------dg~~la 536 (744)
.+. .+. .++|+-.. .++...+.. ...+...+.|+| -+-.+|
T Consensus 248 Pag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~-----------~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 248 PAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS-----------PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred ccceeeeCCceeeceeEeeccccccCceeecCC-----------CCcceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 642 222 34444321 123333333 344455555544 233456
Q ss_pred EEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCcc
Q 004581 537 AVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 598 (744)
Q Consensus 537 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~ 598 (744)
.++.+ .|+|||.++..+...+.+.|-..++.++|++ ||..|++.+.||-.-+-.++..++
T Consensus 317 iAt~~-svyvydtq~~~P~~~v~nihy~~iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 317 IATKN-SVYVYDTQTLEPLAVVDNIHYSAITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred Eeecc-eEEEeccccccceEEEeeeeeeeecceeecC-CCcEEEEeccCCceEEEEEcchhc
Confidence 66554 6999999999999988888889999999999 999999999999888888888876
No 155
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=6.6e-21 Score=185.32 Aligned_cols=321 Identities=14% Similarity=0.124 Sum_probs=211.4
Q ss_pred EEEEEecC--C--eEEEEcCCCCEEEEeCCCcc------eEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccC
Q 004581 184 WSLLSLRC--G--TLVSADSTGSVQFWDSRHGT------LLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE 253 (744)
Q Consensus 184 ~~~~~~~~--~--~l~s~~~dg~i~vwd~~~~~------~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~ 253 (744)
.+..|++. . .|+.+.++|.|.++|.+... .+.....|.+.|..+.|.|....|++++.|.++++||+...
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 33556542 2 68999999999999987532 23556789999999999997788999999999999999987
Q ss_pred cCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecC
Q 004581 254 SIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD 333 (744)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~ 333 (744)
.. .-.....+|+..|.+++|. +.+ ...|++|+.
T Consensus 133 ~l---------------~G~~~~~GH~~SvkS~cf~---------~~n-----------------------~~vF~tGgR 165 (720)
T KOG0321|consen 133 RL---------------VGGRLNLGHTGSVKSECFM---------PTN-----------------------PAVFCTGGR 165 (720)
T ss_pred ee---------------ecceeecccccccchhhhc---------cCC-----------------------CcceeeccC
Confidence 63 1123478999999999997 333 348999999
Q ss_pred CCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEE
Q 004581 334 DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQV 413 (744)
Q Consensus 334 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (744)
||.|.+||++....-.....+ . .++....... .+..+. .+... -
T Consensus 166 Dg~illWD~R~n~~d~~e~~~--------~---------------------~~~~~~n~~p-tpskp~-----~kr~~-k 209 (720)
T KOG0321|consen 166 DGEILLWDCRCNGVDALEEFD--------N---------------------RIYGRHNTAP-TPSKPL-----KKRIR-K 209 (720)
T ss_pred CCcEEEEEEeccchhhHHHHh--------h---------------------hhhccccCCC-CCCchh-----hcccc-c
Confidence 999999999854311000000 0 0000000000 000000 00000 0
Q ss_pred EecCCCCeEE---EEEcCCCCEEEE-E-cCCceEEEEeecCCCCCceEEeeeccCCcc---cccccEEEEeeCCCEEEEE
Q 004581 414 KSKASRKIIC---STISNSGMLFAY-S-DHVKPSLFELKKGKVGQGEWIINKRQLPRK---LQFAHSMIFSYDSSQLIIA 485 (744)
Q Consensus 414 ~~~~~~~i~~---~~~s~~g~~la~-~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~i~~spd~~~l~~~ 485 (744)
...+...|.+ +.+..|...||+ | .|+.|++||+.......+.-......++.+ .-.+.++.....|.+|.+.
T Consensus 210 ~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~As 289 (720)
T KOG0321|consen 210 WKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFAS 289 (720)
T ss_pred cccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEE
Confidence 0111223333 445567777777 4 599999999986221111000111122222 2267777777788999988
Q ss_pred eCCCcEEEEEccCC--ceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCC
Q 004581 486 GHDRRIYVVDVSSS--ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEG 563 (744)
Q Consensus 486 ~~dg~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~ 563 (744)
+.|+.|+.|++.+- .++..+.++.. ..--..-..|||+.+|++|+.|...++|.+.+.+.-..+...|.
T Consensus 290 CtD~sIy~ynm~s~s~sP~~~~sg~~~---------~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght 360 (720)
T KOG0321|consen 290 CTDNSIYFYNMRSLSISPVAEFSGKLN---------SSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHT 360 (720)
T ss_pred ecCCcEEEEeccccCcCchhhccCccc---------ceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcc
Confidence 88999999999643 33444443211 11112235799999999999999999999999887666667788
Q ss_pred CceeEEeecCCCCCeEEEEecCCeEEEEEcCCC
Q 004581 564 ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 596 (744)
Q Consensus 564 ~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~ 596 (744)
..|++++|.|..-.-++++++|..+++|++..+
T Consensus 361 ~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 361 REVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 899999999855566888899999999999765
No 156
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=6.8e-21 Score=177.48 Aligned_cols=190 Identities=16% Similarity=0.219 Sum_probs=156.4
Q ss_pred CCCeeEEecCCCeEEEEEccCC---ceeE------------------EeeccCcceeEEeeccCCCccccccccccccCC
Q 004581 4 PGGRLFSSSIDGSVSEWDLYDL---KQKI------------------VLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGN 62 (744)
Q Consensus 4 ~~~~l~~~~~d~~i~iwd~~~~---~~~~------------------~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~ 62 (744)
+|.++|.|+.|..|.|||+.-- .+.. .-++|+..|-+|+|+..-+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~-------------- 256 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR-------------- 256 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc--------------
Confidence 4678999999999999998521 1111 1235777777777776653
Q ss_pred ccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecC-
Q 004581 63 GYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSAD- 141 (744)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~d- 141 (744)
+.||+|+.|.+|++||+.++++. .++..|.+.|.+++|+|.
T Consensus 257 -----------------------------------nVLaSgsaD~TV~lWD~~~g~p~---~s~~~~~k~Vq~l~wh~~~ 298 (463)
T KOG0270|consen 257 -----------------------------------NVLASGSADKTVKLWDVDTGKPK---SSITHHGKKVQTLEWHPYE 298 (463)
T ss_pred -----------------------------------eeEEecCCCceEEEEEcCCCCcc---eehhhcCCceeEEEecCCC
Confidence 58999999999999999988887 778889999999999985
Q ss_pred CCEEEEEeCCCeEEEEEccCCceE-EEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCC-cceEEEe
Q 004581 142 GNMLYSGSSDGYIRSWDAKLGYEI-YRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRH-GTLLQAH 217 (744)
Q Consensus 142 g~~l~t~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~-~~~~~~~ 217 (744)
..+|++|+.|++|.+.|.+..... ..+ ...+.|-.++|.|.. .++++..||+|+-+|++. ++++.++
T Consensus 299 p~~LLsGs~D~~V~l~D~R~~~~s~~~w---------k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~ 369 (463)
T KOG0270|consen 299 PSVLLSGSYDGTVALKDCRDPSNSGKEW---------KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL 369 (463)
T ss_pred ceEEEeccccceEEeeeccCccccCceE---------EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEE
Confidence 568999999999999999842222 222 256788899999988 788999999999999987 5999999
Q ss_pred eccccceeEEEEcCCC-CEEEeecCCCeEEEEEcccCc
Q 004581 218 SFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCES 254 (744)
Q Consensus 218 ~~h~~~v~~l~~~~~~-~~l~~~~~dg~i~iw~~~~~~ 254 (744)
+.|.++|.+|++++.. .++++++.|+.|++|++....
T Consensus 370 ~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 370 KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred EeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence 9999999999999854 578889999999999998755
No 157
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.87 E-value=1e-17 Score=177.91 Aligned_cols=371 Identities=24% Similarity=0.358 Sum_probs=274.6
Q ss_pred EeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCCeE
Q 004581 30 VLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCV 109 (744)
Q Consensus 30 ~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i 109 (744)
.+..|...|.++.+.+.+ ..++.++.|+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~--------------------------------------------------~~~~~~~~d~~~ 89 (466)
T COG2319 60 LLRGHEDSITSIAFSPDG--------------------------------------------------ELLLSGSSDGTI 89 (466)
T ss_pred eeeeccceEEEEEECCCC--------------------------------------------------cEEEEecCCCcE
Confidence 456789999999999998 578888899999
Q ss_pred EEEEecCCC-ceeEeecccCcc-CcEEEEEE-ecCCC-EEEEEeC-CCeEEEEEccC-CceEEEEEecCCCCCCCCceeE
Q 004581 110 RIYRITDSD-ELIYHRSLPRVS-GRVLSVTW-SADGN-MLYSGSS-DGYIRSWDAKL-GYEIYRITVGLGGLGSGPELCI 183 (744)
Q Consensus 110 ~iwd~~~~~-~~~~~~~~~~h~-~~V~~~~~-s~dg~-~l~t~~~-dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v 183 (744)
.+|+...+. .. ..+..+. ..+..+.+ ++++. .++..+. |+.+.+|+... ......+. .|...|
T Consensus 90 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--------~~~~~v 158 (466)
T COG2319 90 KLWDLDNGEKLI---KSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLE--------GHSESV 158 (466)
T ss_pred EEEEcCCCceeE---EEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEe--------cCcccE
Confidence 999997554 33 5555533 37777777 88888 5555445 99999999987 67777776 699999
Q ss_pred EEEEEecCC-eEEEEcC-CCCEEEEeCCCcceEEEeeccccceeEEEEcCCCC-EEEeecCCCeEEEEEcccCcCCCCCC
Q 004581 184 WSLLSLRCG-TLVSADS-TGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHN-RVFSTGSDGQVILYKASCESIGPNDG 260 (744)
Q Consensus 184 ~~~~~~~~~-~l~s~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~ 260 (744)
..+.|+|++ .+++++. ++.+++|+...+..+..+.+|...|.+++|+|++. .+++++.|+.|++|+...+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~------ 232 (466)
T COG2319 159 TSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK------ 232 (466)
T ss_pred EEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCc------
Confidence 999999999 7777775 99999999999889999999999999999999998 55555899999999776433
Q ss_pred CCcccccceEEEEe-eeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEE
Q 004581 261 LSSSEVIKKWIYVG-SVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFA 339 (744)
Q Consensus 261 ~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~ 339 (744)
... .+..|.... ...++ +++ ..+++++.|+.+++
T Consensus 233 -----------~~~~~~~~~~~~~-~~~~~---------~~~------------------------~~~~~~~~d~~~~~ 267 (466)
T COG2319 233 -----------LLRSTLSGHSDSV-VSSFS---------PDG------------------------SLLASGSSDGTIRL 267 (466)
T ss_pred -----------EEeeecCCCCcce-eEeEC---------CCC------------------------CEEEEecCCCcEEE
Confidence 133 466666664 22453 333 37889999999999
Q ss_pred EecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCC
Q 004581 340 YCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASR 419 (744)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (744)
|+...... .+..+ ..|..
T Consensus 268 ~~~~~~~~-------------------------------------------------------------~~~~~-~~~~~ 285 (466)
T COG2319 268 WDLRSSSS-------------------------------------------------------------LLRTL-SGHSS 285 (466)
T ss_pred eeecCCCc-------------------------------------------------------------EEEEE-ecCCc
Confidence 99875331 00011 23357
Q ss_pred CeEEEEEcCCCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEE-eCCCcEEEEEcc
Q 004581 420 KIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA-GHDRRIYVVDVS 497 (744)
Q Consensus 420 ~i~~~~~s~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~-~~dg~i~v~d~~ 497 (744)
.+.++.++|++..+++ +.++.+.+|+... ........ ...+...+..+.|.+++..++.+ ..|+.+.+|++.
T Consensus 286 ~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 359 (466)
T COG2319 286 SVLSVAFSPDGKLLASGSSDGTVRLWDLET---GKLLSSLT---LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR 359 (466)
T ss_pred cEEEEEECCCCCEEEEeeCCCcEEEEEcCC---CceEEEee---ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecC
Confidence 7888899998877776 4667789996654 22211111 22333368888884343566666 678899999998
Q ss_pred CCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEE-EeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCC
Q 004581 498 SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA-VNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNN 576 (744)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las-~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~ 576 (744)
.......... ...+..+.+++ ...+.. +..++.+.+|+.............. ..+..+.+++ ++
T Consensus 360 ~~~~~~~~~~------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~ 424 (466)
T COG2319 360 TGKPLKTLEG------------HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT-SRVTSLDFSP-DG 424 (466)
T ss_pred CCceeEEecC------------CceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCC-CcEEEEEECC-CC
Confidence 7663333332 22288999999 544444 6889999999999988776665432 5899999999 99
Q ss_pred CeEEEEecCCeEEEEEcCC
Q 004581 577 NVLIITTSSNQVYVFDVEA 595 (744)
Q Consensus 577 ~~l~~~~~d~~v~vwd~~~ 595 (744)
..++.++.++.+++|++.+
T Consensus 425 ~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 425 KSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cEEEEecCCCcEEEEeccC
Confidence 9999999999999999988
No 158
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=1.3e-20 Score=177.59 Aligned_cols=290 Identities=16% Similarity=0.148 Sum_probs=209.7
Q ss_pred EEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEE--EEcCCCCEEEEeCCC--cce--EEEe
Q 004581 144 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLV--SADSTGSVQFWDSRH--GTL--LQAH 217 (744)
Q Consensus 144 ~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~--s~~~dg~i~vwd~~~--~~~--~~~~ 217 (744)
+++..+.| .+++||+...+....+... .....+.++.|.....|+ +.+.|..|++|.-.. ++. +...
T Consensus 5 l~~aS~gd-~~kl~D~s~~~~~~~~~~~------t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~ 77 (673)
T KOG4378|consen 5 LHVASTGD-KTKLSDFSDLETKSEYVHQ------TAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKL 77 (673)
T ss_pred eeeeccCC-ceEEeecccccCccccccC------CCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeecc
Confidence 33433444 8999999776555444311 223348999999888444 445677899996542 222 2222
Q ss_pred eccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCC
Q 004581 218 SFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDP 297 (744)
Q Consensus 218 ~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 297 (744)
.+ ..-.|++......++++||..+.|+|||+.... +.+.+..|...|+++.+.
T Consensus 78 ~g--d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl-----------------~hr~lkdh~stvt~v~YN-------- 130 (673)
T KOG4378|consen 78 TG--DNAFCVACASQSLYEISGGQSGCVKIWDLRAKL-----------------IHRFLKDHQSTVTYVDYN-------- 130 (673)
T ss_pred cc--chHHHHhhhhcceeeeccCcCceeeehhhHHHH-----------------HhhhccCCcceeEEEEec--------
Confidence 22 244566665566899999999999999999765 366788999999999985
Q ss_pred CCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEE
Q 004581 298 LPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLL 377 (744)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 377 (744)
- ...+|++++..|.|.+..+.+......+.
T Consensus 131 -~------------------------~DeyiAsvs~gGdiiih~~~t~~~tt~f~------------------------- 160 (673)
T KOG4378|consen 131 -N------------------------TDEYIASVSDGGDIIIHGTKTKQKTTTFT------------------------- 160 (673)
T ss_pred -C------------------------CcceeEEeccCCcEEEEecccCcccccee-------------------------
Confidence 2 22399999999999998887644322211
Q ss_pred EEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE--EcCCceEEEEeecCCCCCce
Q 004581 378 VQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY--SDHVKPSLFELKKGKVGQGE 455 (744)
Q Consensus 378 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~--~~~~~v~l~~~~~~~~~~~~ 455 (744)
.+....++-+.++|..+++.. +.+|.|.+||+.. ....
T Consensus 161 -------------------------------------~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g---~sp~ 200 (673)
T KOG4378|consen 161 -------------------------------------IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG---MSPI 200 (673)
T ss_pred -------------------------------------cCCCCeEEEeecccccceeeEeeccCCeEEEEeccC---CCcc
Confidence 111133445667777776554 6899999999975 2221
Q ss_pred EEeeeccCCcccccccEEEEeeCC-CEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCE
Q 004581 456 WIINKRQLPRKLQFAHSMIFSYDS-SQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQW 534 (744)
Q Consensus 456 ~~~~~~~~~~~~~~v~~i~~spd~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~ 534 (744)
. .-...|..+...|+|+|.. .+|++.+.|..|.+||....+....+. ...+.+.++|+++|.+
T Consensus 201 ~----~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~------------y~~Plstvaf~~~G~~ 264 (673)
T KOG4378|consen 201 F----HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT------------YSHPLSTVAFSECGTY 264 (673)
T ss_pred c----chhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee------------ecCCcceeeecCCceE
Confidence 1 2345677789999999955 567888999999999998777777777 4788999999999999
Q ss_pred EEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecC
Q 004581 535 LAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPP 573 (744)
Q Consensus 535 las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp 573 (744)
|++|+..|.|..||+...+........|...|++++|-|
T Consensus 265 L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 265 LCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred EEeecCCceEEEEecccCCCCceEeeecccceeEEEeee
Confidence 999999999999999987766555566778899999988
No 159
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=4.6e-21 Score=190.65 Aligned_cols=292 Identities=13% Similarity=0.131 Sum_probs=215.5
Q ss_pred CcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeC
Q 004581 131 GRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDS 208 (744)
Q Consensus 131 ~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~ 208 (744)
....++...++-..++.++.. .+.|+.+........+....+. .......+..+.|.... +|++++..|.|.+||+
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~-kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKT-KQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeeccc-ccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 345666777888888888765 7888877553322222111111 00222344556676322 8999999999999999
Q ss_pred CC---cceEEEeeccccceeEEEEcCCC-CEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcce
Q 004581 209 RH---GTLLQAHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVR 284 (744)
Q Consensus 209 ~~---~~~~~~~~~h~~~v~~l~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 284 (744)
.. .+++..+..|...++++.|++.. .+|++|+.||.|++||++.... ...+++.+..|+
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S-----------------~~t~~~nSESiR 180 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS-----------------KSTFRSNSESIR 180 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc-----------------cccccccchhhh
Confidence 86 56677899999999999999854 6788999999999999998763 455667788888
Q ss_pred eeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCcccc
Q 004581 285 ALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHL 364 (744)
Q Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (744)
.+.|++ . .+..++++...|.+.+||++....
T Consensus 181 DV~fsp---------~-----------------------~~~~F~s~~dsG~lqlWDlRqp~r----------------- 211 (839)
T KOG0269|consen 181 DVKFSP---------G-----------------------YGNKFASIHDSGYLQLWDLRQPDR----------------- 211 (839)
T ss_pred ceeecc---------C-----------------------CCceEEEecCCceEEEeeccCchh-----------------
Confidence 888872 1 123788888888888888864110
Q ss_pred ccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEE
Q 004581 365 VHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLF 444 (744)
Q Consensus 365 v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~ 444 (744)
T Consensus 212 -------------------------------------------------------------------------------- 211 (839)
T KOG0269|consen 212 -------------------------------------------------------------------------------- 211 (839)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCc--eeeeeccCcccccccCCCCCCc
Q 004581 445 ELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE--LLHTFTPCREEHDREIQPSEPP 522 (744)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 522 (744)
. ..++..|.+++.++.|+|++.+||+|+.|+.|+|||..+.+ .+.++.. ..+
T Consensus 212 ---------~-----~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT------------iap 265 (839)
T KOG0269|consen 212 ---------C-----EKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT------------IAP 265 (839)
T ss_pred ---------H-----HHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee------------cce
Confidence 0 14456777799999999999999999999999999997554 4455553 678
Q ss_pred eEEEEECCCCCE-EEEEe--CCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCC
Q 004581 523 ITKMFTSSDGQW-LAAVN--CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 596 (744)
Q Consensus 523 i~~l~~spdg~~-las~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~ 596 (744)
|..+.|-|+.++ ||+++ .|-.|+|||+...-........|...++.++|...|...|.+++.|++|..-.+++.
T Consensus 266 v~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 266 VGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 999999998775 55554 477899999987765444445577889999998767788999999998876555544
No 160
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=3.3e-20 Score=173.49 Aligned_cols=299 Identities=15% Similarity=0.128 Sum_probs=217.8
Q ss_pred ecccCccCcEEEEEEecCCC--EEEEEeCCCeEEEEEccCCc----eEEEEEecCCCCCCCCceeEEEEEEecCC--eEE
Q 004581 124 RSLPRVSGRVLSVTWSADGN--MLYSGSSDGYIRSWDAKLGY----EIYRITVGLGGLGSGPELCIWSLLSLRCG--TLV 195 (744)
Q Consensus 124 ~~~~~h~~~V~~~~~s~dg~--~l~t~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~ 195 (744)
...+-|.++|++++|+|..+ ++|+|+.-|+|-+||+.+.+ .+..+. .|..+|.++.|+|.+ +++
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~--------~hs~~Vs~l~F~P~n~s~i~ 251 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT--------PHSGPVSGLKFSPANTSQIY 251 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec--------cCCccccceEecCCChhhee
Confidence 45566889999999999654 78888889999999995322 233343 799999999999988 899
Q ss_pred EEcCCCCEEEEeCCCcce--EEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEE
Q 004581 196 SADSTGSVQFWDSRHGTL--LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYV 273 (744)
Q Consensus 196 s~~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (744)
+.+.||+|+.-|++.+.. +.++......+..+.|+.+...++.++.=|...+||++.... ..
T Consensus 252 ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s----------------~~ 315 (498)
T KOG4328|consen 252 SSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS----------------EY 315 (498)
T ss_pred eeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCc----------------cc
Confidence 999999999999987543 333333455678888998888888888878999999998762 13
Q ss_pred eeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCccc
Q 004581 274 GSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEI 353 (744)
Q Consensus 274 ~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~ 353 (744)
..++.|...|.++++. |- ...+|++++.|++.++||++....-.
T Consensus 316 ~~~~lh~kKI~sv~~N---------P~-----------------------~p~~laT~s~D~T~kIWD~R~l~~K~---- 359 (498)
T KOG4328|consen 316 ENLRLHKKKITSVALN---------PV-----------------------CPWFLATASLDQTAKIWDLRQLRGKA---- 359 (498)
T ss_pred hhhhhhhcccceeecC---------CC-----------------------CchheeecccCcceeeeehhhhcCCC----
Confidence 4567788899999997 22 12389999999999999998633100
Q ss_pred CCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEE
Q 004581 354 CPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLF 433 (744)
Q Consensus 354 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 433 (744)
. |
T Consensus 360 -----------------------------------------------------------------s--------p----- 361 (498)
T KOG4328|consen 360 -----------------------------------------------------------------S--------P----- 361 (498)
T ss_pred -----------------------------------------------------------------C--------c-----
Confidence 0 0
Q ss_pred EEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEcc----CCceeeeeccCc
Q 004581 434 AYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS----SSELLHTFTPCR 509 (744)
Q Consensus 434 a~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~----~~~~~~~~~~~~ 509 (744)
+ .....|...|.++.|||++-.|++.+.|..|+|||.. ...++.++....
T Consensus 362 ---------------------~-----lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~ 415 (498)
T KOG4328|consen 362 ---------------------F-----LSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNN 415 (498)
T ss_pred ---------------------c-----eecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccC
Confidence 0 0112233478899999988889999999999999983 333444444211
Q ss_pred ccccccCCCCCCc--eEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeE-EeecCCCCC-eEEEEecC
Q 004581 510 EEHDREIQPSEPP--ITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTA-AGFPPQNNN-VLIITTSS 585 (744)
Q Consensus 510 ~~~~~~~~~~~~~--i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~-l~~sp~~~~-~l~~~~~d 585 (744)
. +... .....|.||..++++|..-..|-|||-+.++..+.+.......|.+ ..|+| -+. +++-++..
T Consensus 416 ~--------t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP-~~~~~~aG~~s~ 486 (498)
T KOG4328|consen 416 R--------TGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHP-MRDTLAAGGNSS 486 (498)
T ss_pred c--------ccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecc-cccceeccCCcc
Confidence 0 1122 2345799999999999999999999999998777764433334443 57999 666 44445567
Q ss_pred CeEEEEEcCC
Q 004581 586 NQVYVFDVEA 595 (744)
Q Consensus 586 ~~v~vwd~~~ 595 (744)
|.|+||.-+.
T Consensus 487 Gki~vft~k~ 496 (498)
T KOG4328|consen 487 GKIYVFTNKK 496 (498)
T ss_pred ceEEEEecCC
Confidence 7999986554
No 161
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=3.1e-20 Score=179.21 Aligned_cols=317 Identities=17% Similarity=0.231 Sum_probs=221.6
Q ss_pred CCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCC--EEEeecCCCeEEEEEcccC
Q 004581 177 SGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHN--RVFSTGSDGQVILYKASCE 253 (744)
Q Consensus 177 ~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~--~l~~~~~dg~i~iw~~~~~ 253 (744)
.+|.+.|.++...|.| .|++|+.||+|+||.+.+|.++.++.. .+.|.|++|+|.+. .|+++ ....+.+-+..-+
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA-~~~~~~ivnp~~G 474 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVA-VGECVLIVNPIFG 474 (733)
T ss_pred eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEE-ecCceEEeCcccc
Confidence 3899999999999999 999999999999999999999999886 67999999999764 33443 3444555443322
Q ss_pred cCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEe--
Q 004581 254 SIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISA-- 331 (744)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~-- 331 (744)
.. .+... ..+.|+++
T Consensus 475 ~~----------------------~e~~~-----------------------------------------t~ell~~~~~ 491 (733)
T KOG0650|consen 475 DR----------------------LEVGP-----------------------------------------TKELLASAPN 491 (733)
T ss_pred ch----------------------hhhcc-----------------------------------------hhhhhhcCCC
Confidence 10 00000 00022222
Q ss_pred --cCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcce
Q 004581 332 --GDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSL 409 (744)
Q Consensus 332 --~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 409 (744)
..++.+..|.-....... .
T Consensus 492 ~~~p~~~~~~W~~~~~~e~~-----------------------------------------------------------~ 512 (733)
T KOG0650|consen 492 ESEPDAAVVTWSRASLDELE-----------------------------------------------------------K 512 (733)
T ss_pred ccCCcccceeechhhhhhhc-----------------------------------------------------------c
Confidence 123344555433211100 0
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEE----cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEE
Q 004581 410 LVQVKSKASRKIICSTISNSGMLFAYS----DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA 485 (744)
Q Consensus 410 ~~~~~~~~~~~i~~~~~s~~g~~la~~----~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~ 485 (744)
-..+...+...|..+.|+..|.||++. ....|.|+.+...... ..+....+.+.++.|+|...+|+++
T Consensus 513 ~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ--------~PF~kskG~vq~v~FHPs~p~lfVa 584 (733)
T KOG0650|consen 513 GVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ--------SPFRKSKGLVQRVKFHPSKPYLFVA 584 (733)
T ss_pred ceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccccc--------CchhhcCCceeEEEecCCCceEEEE
Confidence 122334556889999999999999983 3456777777652111 1222333478899999999999998
Q ss_pred eCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCc
Q 004581 486 GHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGAS 565 (744)
Q Consensus 486 ~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 565 (744)
+.. .|+|||+...++++.+.. ....|..++++|.|.-|+.++.|+.+..||++-....+....+|...
T Consensus 585 Tq~-~vRiYdL~kqelvKkL~t-----------g~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~a 652 (733)
T KOG0650|consen 585 TQR-SVRIYDLSKQELVKKLLT-----------GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKA 652 (733)
T ss_pred ecc-ceEEEehhHHHHHHHHhc-----------CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhh
Confidence 854 699999998888888776 68889999999999999999999999999998765555555668889
Q ss_pred eeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccC-CcccccccCCC----ceEEEEeCCCCCCcEEEEEcCc
Q 004581 566 VTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTF-VLPRRYQEFPG----EVIGLSFSPSPSSSSVIIYSAR 640 (744)
Q Consensus 566 v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~-~~~~~~~~~~~----~v~~i~fspdg~~~~~~~~~~~ 640 (744)
+++++|++ .-.++++|+.||++.||--. .+++. -+++. ...+.+.+|.. .|.+..|+|. .-|+++++
T Consensus 653 vr~Va~H~-ryPLfas~sdDgtv~Vfhg~--VY~Dl-~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~----qpWLfsAG 724 (733)
T KOG0650|consen 653 VRSVAFHK-RYPLFASGSDDGTVIVFHGM--VYNDL-LQNPLIVPLKRLRGHEKTNDLGVLDTIWHPR----QPWLFSAG 724 (733)
T ss_pred hhhhhhcc-ccceeeeecCCCcEEEEeee--eehhh-hcCCceEeeeeccCceeecccceEeecccCC----CceEEecC
Confidence 99999999 88999999999999998532 11111 12332 34567777764 4899999995 24666655
Q ss_pred eEEEE
Q 004581 641 AMCVI 645 (744)
Q Consensus 641 ~~~~~ 645 (744)
+.-.|
T Consensus 725 Ad~ti 729 (733)
T KOG0650|consen 725 ADGTI 729 (733)
T ss_pred CCceE
Confidence 54333
No 162
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.86 E-value=1.2e-20 Score=168.67 Aligned_cols=375 Identities=11% Similarity=0.104 Sum_probs=221.9
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcc
Q 004581 135 SVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGT 212 (744)
Q Consensus 135 ~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~ 212 (744)
-++|||+|+++|+++.- .+.|=|.++-+..+.+. --..|.-+.|..|. .|.....++.|.+|++...+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~---------cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe 82 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL---------CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE 82 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH---------HHHHhhheeeeccceeeeeeeeccceEEEEEeecce
Confidence 46899999999999865 88888888766554443 23456667888888 45566778999999999888
Q ss_pred eEEEeeccccceeEEEEcCCCCEEEe-ecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeecc
Q 004581 213 LLQAHSFHKGDVNALAAAPSHNRVFS-TGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVP 291 (744)
Q Consensus 213 ~~~~~~~h~~~v~~l~~~~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 291 (744)
....+....+.+.+++|+|||+.|+. ...|-.|.+|.+.+.. ...+......+..++|.
T Consensus 83 w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~------------------~~~~~~pK~~~kg~~f~-- 142 (447)
T KOG4497|consen 83 WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK------------------GYLLPHPKTNVKGYAFH-- 142 (447)
T ss_pred eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce------------------eEEecccccCceeEEEC--
Confidence 88899888999999999999966664 5569999999998865 23333444556788886
Q ss_pred CCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecC---ccCCCCCcccCCCCCCCccccccce
Q 004581 292 ISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCAN---EFTKFSPHEICPAPQRVPIHLVHNT 368 (744)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~ 368 (744)
+||+ +.+.++.-...-.+.+. ....+... .......+++
T Consensus 143 -------~dg~------------------------f~ai~sRrDCkdyv~i~~c~~W~ll~~f-------~~dT~Dltgi 184 (447)
T KOG4497|consen 143 -------PDGQ------------------------FCAILSRRDCKDYVQISSCKAWILLKEF-------KLDTIDLTGI 184 (447)
T ss_pred -------CCCc------------------------eeeeeecccHHHHHHHHhhHHHHHHHhc-------CCCcccccCc
Confidence 6766 44333321100000000 00000000 0011233456
Q ss_pred eecCCeEEEEEeCCeE--EEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCceEEEE
Q 004581 369 IFSHTSLLLVQYSCRL--DILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFE 445 (744)
Q Consensus 369 ~~s~~~~~l~~~~~~i--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~ 445 (744)
.++|||..++..++.+ +++... -.-.+..++++|.+++|++| .|+.+|+.+
T Consensus 185 eWsPdg~~laVwd~~Leykv~aYe--------------------------~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 185 EWSPDGNWLAVWDNVLEYKVYAYE--------------------------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred eECCCCcEEEEecchhhheeeeee--------------------------eccceeEEEeccccceEEeeccchhhhhhc
Confidence 6666666665544311 111110 01234555666666666664 443333222
Q ss_pred eecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeC-CCcEEEEEccCCceee------eeccCc----c--cc
Q 004581 446 LKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DRRIYVVDVSSSELLH------TFTPCR----E--EH 512 (744)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~-dg~i~v~d~~~~~~~~------~~~~~~----~--~~ 512 (744)
.+.|.|=++++-.++. |-+..+..-++.+.+. .|.+.. + ..
T Consensus 239 --------------------------h~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~s 292 (447)
T KOG4497|consen 239 --------------------------HFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEES 292 (447)
T ss_pred --------------------------eeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccc
Confidence 1223333333221111 1111111101100000 000000 0 00
Q ss_pred ------------------cccCCCCCCceEEEEECCCCCEEEEEeC--CCcEEEEECCCcceEEEEecCCCCceeEEeec
Q 004581 513 ------------------DREIQPSEPPITKMFTSSDGQWLAAVNC--FGDVYIFNLEIQRQHWFISRLEGASVTAAGFP 572 (744)
Q Consensus 513 ------------------~~~~~~~~~~i~~l~~spdg~~las~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~s 572 (744)
....+...-.+..++||+|..|+|+-.. -+.+.+||++..+....+...| +|++..|+
T Consensus 293 e~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~--piraf~Wd 370 (447)
T KOG4497|consen 293 ETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKH--PIRAFEWD 370 (447)
T ss_pred hhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhcc--ceeEEEeC
Confidence 0011223445778999999999999754 3579999999998877776554 89999999
Q ss_pred CCCCCeEEEEecCCeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCCCCCcEEEEEcCceEEEEe
Q 004581 573 PQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVID 646 (744)
Q Consensus 573 p~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~~~~~~ 646 (744)
| ....|+++.....+++|....-... ........|..+.|.-+| +.+++-+..++|..-
T Consensus 371 P-~~prL~vctg~srLY~W~psg~~~V------------~vP~~GF~i~~l~W~~~g--~~i~l~~kDafc~a~ 429 (447)
T KOG4497|consen 371 P-GRPRLVVCTGKSRLYFWAPSGPRVV------------GVPKKGFNIQKLQWLQPG--EFIVLCGKDAFCVAI 429 (447)
T ss_pred C-CCceEEEEcCCceEEEEcCCCceEE------------ecCCCCceeeeEEecCCC--cEEEEEcCCceEEEE
Confidence 9 7677888777778999988764321 122223689999999885 456677777777653
No 163
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=3.1e-20 Score=166.21 Aligned_cols=333 Identities=14% Similarity=0.139 Sum_probs=219.1
Q ss_pred ecccCccCcEEEEEEec-----CCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecC---C--e
Q 004581 124 RSLPRVSGRVLSVTWSA-----DGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRC---G--T 193 (744)
Q Consensus 124 ~~~~~h~~~V~~~~~s~-----dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~--~ 193 (744)
+....|..+|..++|++ +-+.+||++.+ .+.+|.....-.++.+..-... .++...+.++|+-| + .
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~---d~~Esfytcsw~yd~~~~~p~ 107 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADE---DHDESFYTCSWSYDSNTGNPF 107 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCC---CCCcceEEEEEEecCCCCCee
Confidence 34457889999999985 33467777655 8999987654333333322111 46666667777643 2 7
Q ss_pred EEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCC-CEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEE
Q 004581 194 LVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIY 272 (744)
Q Consensus 194 l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 272 (744)
+++|+.-|.|+|.|+.++++...+.+|...|..+.+.|+. +++++++.|..|++|++.+... -..
T Consensus 108 la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C--------------v~V 173 (385)
T KOG1034|consen 108 LAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC--------------VAV 173 (385)
T ss_pred EEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE--------------EEE
Confidence 8999999999999999999999999999999999999975 7889999999999999998762 111
Q ss_pred EeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcc
Q 004581 273 VGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHE 352 (744)
Q Consensus 273 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~ 352 (744)
..-..+|...|.++.|+ +++. +++++|.|.+|.+|++..........
T Consensus 174 fGG~egHrdeVLSvD~~---------~~gd------------------------~i~ScGmDhslk~W~l~~~~f~~~lE 220 (385)
T KOG1034|consen 174 FGGVEGHRDEVLSVDFS---------LDGD------------------------RIASCGMDHSLKLWRLNVKEFKNKLE 220 (385)
T ss_pred ecccccccCcEEEEEEc---------CCCC------------------------eeeccCCcceEEEEecChhHHhhhhh
Confidence 33457899999999997 5554 99999999999999998432111110
Q ss_pred cCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCE
Q 004581 353 ICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGML 432 (744)
Q Consensus 353 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 432 (744)
. +.. |+|++..
T Consensus 221 ~-------------s~~--------------------------------------------------------~~~~~t~ 231 (385)
T KOG1034|consen 221 L-------------SIT--------------------------------------------------------YSPNKTT 231 (385)
T ss_pred h-------------hcc--------------------------------------------------------cCCCCcc
Confidence 0 011 2222110
Q ss_pred EEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEc-cCCceeeeeccCccc
Q 004581 433 FAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDV-SSSELLHTFTPCREE 511 (744)
Q Consensus 433 la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~-~~~~~~~~~~~~~~~ 511 (744)
.-.- .....+.+.. ...-|...|-|+.| =|.++++-+-++.|..|.. +-++.++........
T Consensus 232 ~pfp-------------t~~~~fp~fs--t~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~ 294 (385)
T KOG1034|consen 232 RPFP-------------TPKTHFPDFS--TTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESA 294 (385)
T ss_pred CcCC-------------cccccccccc--ccccccchHHHHHH--HhhheeecccCceEEEEecchhhhhhhccCCCccc
Confidence 0000 0000000000 11224446667766 3678888888889999987 222222212110000
Q ss_pred --ccccCCCCCCceEE--EEECCCCCEEEEEeCCCcEEEEECCCcceEE-E--EecCCCCceeEEeecCCCCCeEEEEec
Q 004581 512 --HDREIQPSEPPITK--MFTSSDGQWLAAVNCFGDVYIFNLEIQRQHW-F--ISRLEGASVTAAGFPPQNNNVLIITTS 584 (744)
Q Consensus 512 --~~~~~~~~~~~i~~--l~~spdg~~las~~~dg~i~iwd~~~~~~~~-~--~~~~~~~~v~~l~~sp~~~~~l~~~~~ 584 (744)
.-....-....|.- .+|.|-+++||.|...|.|++||++..++.. . .....+..|+..+|+. |+.+|+..++
T Consensus 295 ~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~-dgs~lv~vcd 373 (385)
T KOG1034|consen 295 TTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSR-DGSILVLVCD 373 (385)
T ss_pred eeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecc-cCcEEEEEeC
Confidence 00000112334444 4567778999999999999999998776531 1 1112236899999999 9999999999
Q ss_pred CCeEEEEEcC
Q 004581 585 SNQVYVFDVE 594 (744)
Q Consensus 585 d~~v~vwd~~ 594 (744)
|++|--||.-
T Consensus 374 d~~Vwrwdrv 383 (385)
T KOG1034|consen 374 DGTVWRWDRV 383 (385)
T ss_pred CCcEEEEEee
Confidence 9999999853
No 164
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.86 E-value=1.7e-19 Score=161.07 Aligned_cols=284 Identities=16% Similarity=0.156 Sum_probs=200.3
Q ss_pred CCCCCCeeEEecCCCeEEEEEccCC----c---ee-----EEeec-cCcceeEEeeccCCCccccccccccccCCccccC
Q 004581 1 MGLPGGRLFSSSIDGSVSEWDLYDL----K---QK-----IVLQS-IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLND 67 (744)
Q Consensus 1 ~~~~~~~l~~~~~d~~i~iwd~~~~----~---~~-----~~~~~-h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~ 67 (744)
|+|+|.-|++-+.|..+.+|++..- + .+ .++.- ....|...+|-+--
T Consensus 57 WSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M-------------------- 116 (406)
T KOG2919|consen 57 WSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRM-------------------- 116 (406)
T ss_pred eCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeecc--------------------
Confidence 7999999999999999999998531 0 00 01110 12344444443221
Q ss_pred CCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCc---EEEEEEecCCCE
Q 004581 68 KSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGR---VLSVTWSADGNM 144 (744)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~---V~~~~~s~dg~~ 144 (744)
+..+ ++..++|+.+.+..|++||..+++.-...+.+ .|... -.+++|+|||.+
T Consensus 117 --~s~q---------------------P~t~l~a~ssr~~PIh~wdaftG~lraSy~~y-dh~de~taAhsL~Fs~DGeq 172 (406)
T KOG2919|consen 117 --KSDQ---------------------PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAY-DHQDEYTAAHSLQFSPDGEQ 172 (406)
T ss_pred --ccCC---------------------CccceeeeccccCceeeeeccccccccchhhh-hhHHhhhhheeEEecCCCCe
Confidence 1111 12258999999999999999877654222222 34443 468999999999
Q ss_pred EEEEeCCCeEEEEEc-cCCceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcceEEEeeccc
Q 004581 145 LYSGSSDGYIRSWDA-KLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHK 221 (744)
Q Consensus 145 l~t~~~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~h~ 221 (744)
|+.|- .++|+++|+ +.|+.-..+..-..+ ..+..+.+.+++|+|.. .++.|+...++-|+.-..+.+++.+.+|.
T Consensus 173 lfaGy-krcirvFdt~RpGr~c~vy~t~~~~-k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~ 250 (406)
T KOG2919|consen 173 LFAGY-KRCIRVFDTSRPGRDCPVYTTVTKG-KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHG 250 (406)
T ss_pred Eeecc-cceEEEeeccCCCCCCcchhhhhcc-cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccC
Confidence 99775 569999998 556543333221111 22567899999999977 78999999999999988899999999999
Q ss_pred cceeEEEEcCCCCEEEeecC-CCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCc-ceeeeeeccCCCCCCCC
Q 004581 222 GDVNALAAAPSHNRVFSTGS-DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHD-VRALTVAVPISREDPLP 299 (744)
Q Consensus 222 ~~v~~l~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~~~~~~~~~~ 299 (744)
+.|+.++|.++|+.|++|.. |-.|..||++.... .+..+..|..+ -..|-|..
T Consensus 251 gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~----------------pv~~L~rhv~~TNQRI~FDl--------- 305 (406)
T KOG2919|consen 251 GGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD----------------PVYALERHVGDTNQRILFDL--------- 305 (406)
T ss_pred CCeeeEEeccCcCeecccccCCCeEEEEeehhccc----------------hhhhhhhhccCccceEEEec---------
Confidence 99999999999999999876 88899999987542 24455566552 23344421
Q ss_pred cccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEE
Q 004581 300 EDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ 379 (744)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 379 (744)
.+.++.|++|+.||.|++||+...... +.........++.++++|--.++++
T Consensus 306 ----------------------d~~~~~LasG~tdG~V~vwdlk~~gn~------~sv~~~~sd~vNgvslnP~mpilat 357 (406)
T KOG2919|consen 306 ----------------------DPKGEILASGDTDGSVRVWDLKDLGNE------VSVTGNYSDTVNGVSLNPIMPILAT 357 (406)
T ss_pred ----------------------CCCCceeeccCCCccEEEEecCCCCCc------ccccccccccccceecCcccceeee
Confidence 223459999999999999999874431 1122234477889999999888888
Q ss_pred eCCe
Q 004581 380 YSCR 383 (744)
Q Consensus 380 ~~~~ 383 (744)
.++.
T Consensus 358 ssGq 361 (406)
T KOG2919|consen 358 SSGQ 361 (406)
T ss_pred ccCc
Confidence 7764
No 165
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.86 E-value=2.5e-17 Score=174.97 Aligned_cols=357 Identities=25% Similarity=0.363 Sum_probs=263.9
Q ss_pred CCCCeeEEecCCCeEEEEEccCCc-eeEEeeccCc-ceeEEee-ccCCCccccccccccccCCccccCCCCCCCCCcCcc
Q 004581 3 LPGGRLFSSSIDGSVSEWDLYDLK-QKIVLQSIDF-SIWQMAV-APSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSE 79 (744)
Q Consensus 3 ~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~h~~-~i~~v~~-sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (744)
..+..++.++.|+.+.+|+...+. ....+.++.. .+..+.+ ++++.
T Consensus 75 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 123 (466)
T COG2319 75 PDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGN------------------------------- 123 (466)
T ss_pred CCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcc-------------------------------
Confidence 345668888899999999998887 6777776443 7777777 67662
Q ss_pred CCCCCCcccccccccccCCeEEE-EecCCeEEEEEecC-CCceeEeecccCccCcEEEEEEecCCCEEEEEeC-CCeEEE
Q 004581 80 SENDSDSDELHEQSVVEDRRVAL-ACDDGCVRIYRITD-SDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-DGYIRS 156 (744)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~la~-~~~dg~i~iwd~~~-~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~-dg~i~v 156 (744)
..++. +..|+.+.+|+... .... ..+..|...|.+++|+|++..+++++. |+.+++
T Consensus 124 ------------------~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 182 (466)
T COG2319 124 ------------------SILLASSSLDGTVKLWDLSTPGKLI---RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKL 182 (466)
T ss_pred ------------------eEEeccCCCCccEEEEEecCCCeEE---EEEecCcccEEEEEECCCCCEEEecCCCCCceEE
Confidence 13444 34499999999975 3333 778899999999999999999999886 999999
Q ss_pred EEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCe-EEEE-cCCCCEEEEeCCCcceEE-EeeccccceeEEEEcCCC
Q 004581 157 WDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGT-LVSA-DSTGSVQFWDSRHGTLLQ-AHSFHKGDVNALAAAPSH 233 (744)
Q Consensus 157 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~s~-~~dg~i~vwd~~~~~~~~-~~~~h~~~v~~l~~~~~~ 233 (744)
|++.++..+..+. +|...|.+++|+|++. ++.+ +.|+.|++||...+..+. .+..|...+ ...|++++
T Consensus 183 ~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~ 253 (466)
T COG2319 183 WDLRTGKPLSTLA--------GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDG 253 (466)
T ss_pred EEcCCCceEEeec--------cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCC
Confidence 9999888888887 6899999999999983 5444 899999999999888887 688888876 44899999
Q ss_pred CEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCc
Q 004581 234 NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPI 313 (744)
Q Consensus 234 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (744)
..+++++.|+.+++|+...... .......|...+.++.+. |++.
T Consensus 254 ~~~~~~~~d~~~~~~~~~~~~~----------------~~~~~~~~~~~v~~~~~~---------~~~~----------- 297 (466)
T COG2319 254 SLLASGSSDGTIRLWDLRSSSS----------------LLRTLSGHSSSVLSVAFS---------PDGK----------- 297 (466)
T ss_pred CEEEEecCCCcEEEeeecCCCc----------------EEEEEecCCccEEEEEEC---------CCCC-----------
Confidence 8899999999999999987551 122226778889888885 3332
Q ss_pred cccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccC
Q 004581 314 DFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLEN 393 (744)
Q Consensus 314 ~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~ 393 (744)
.+++++.|+.+.+|+..........
T Consensus 298 -------------~~~~~~~d~~~~~~~~~~~~~~~~~------------------------------------------ 322 (466)
T COG2319 298 -------------LLASGSSDGTVRLWDLETGKLLSSL------------------------------------------ 322 (466)
T ss_pred -------------EEEEeeCCCcEEEEEcCCCceEEEe------------------------------------------
Confidence 6777888888999976642211000
Q ss_pred CcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE--cCCceEEEEeecCCCCCceEEeeeccCCccccccc
Q 004581 394 NVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAH 471 (744)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 471 (744)
. ...+...+..+.+.+++..++.+ .++.+.+|++.... ... ..... ..+.
T Consensus 323 -----------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~---~~~~~---~~~~ 374 (466)
T COG2319 323 -----------------T--LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---PLK---TLEGH---SNVL 374 (466)
T ss_pred -----------------e--ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc---eeE---EecCC---ceEE
Confidence 0 01222346666663332444443 66778888876521 111 11111 1277
Q ss_pred EEEEeeCCCEEEE-EeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC
Q 004581 472 SMIFSYDSSQLII-AGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE 550 (744)
Q Consensus 472 ~i~~spd~~~l~~-~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~ 550 (744)
.+.+++ ...++. +..++.+.+|+.........+.. +...+....+++++.++++++.++.+.+|+..
T Consensus 375 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 375 SVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDG-----------HTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442 (466)
T ss_pred EEEECC-CCCEEEEecCCCceEEEecccCeeeeeccC-----------CCCcEEEEEECCCCcEEEEecCCCcEEEEecc
Confidence 888888 544444 57889999999988877776664 22789999999999999999999999999998
Q ss_pred C
Q 004581 551 I 551 (744)
Q Consensus 551 ~ 551 (744)
+
T Consensus 443 ~ 443 (466)
T COG2319 443 T 443 (466)
T ss_pred C
Confidence 8
No 166
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=8.2e-20 Score=172.24 Aligned_cols=273 Identities=16% Similarity=0.158 Sum_probs=201.1
Q ss_pred eEEecCCCeEEEEEccCCceeEEeeccC--cceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCC
Q 004581 8 LFSSSIDGSVSEWDLYDLKQKIVLQSID--FSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD 85 (744)
Q Consensus 8 l~~~~~d~~i~iwd~~~~~~~~~~~~h~--~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (744)
|-.++....+++||.........+..|. ..+.++.|+.... ++++. .+++..+++|..-.+. .+...+....-
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas-~~gdk~~~~~~K~g~~---~~Vp~~~k~~g 79 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVAS-MAGDKVMRIKEKDGKT---PEVPRVRKLTG 79 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEee-cCCceeEEEecccCCC---Cccceeecccc
Confidence 3344444589999998755554444333 4488888888664 44443 3444455555443331 11222222222
Q ss_pred cccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceE
Q 004581 86 SDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 165 (744)
Q Consensus 86 ~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~ 165 (744)
..+.++.......++++|+..++|+|||+...... +.+++|+..|+++.++-...+||+++..|.|.|..+.++...
T Consensus 80 d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h---r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t 156 (673)
T KOG4378|consen 80 DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH---RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT 156 (673)
T ss_pred chHHHHhhhhcceeeeccCcCceeeehhhHHHHHh---hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccc
Confidence 25555555566789999999999999999833333 888999999999999999999999999999999999999888
Q ss_pred EEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcceEEE-eeccccceeEEEEcCCC-CEEEeecC
Q 004581 166 YRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQA-HSFHKGDVNALAAAPSH-NRVFSTGS 241 (744)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~-~~~h~~~v~~l~~~~~~-~~l~~~~~ 241 (744)
..+.. +....|.-+.|++.. +|.+++.+|.|.+||.....++.. ...|.++...++|+|.+ .+|++.|.
T Consensus 157 t~f~~-------~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~ 229 (673)
T KOG4378|consen 157 TTFTI-------DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGY 229 (673)
T ss_pred cceec-------CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecc
Confidence 88773 345567789999987 788899999999999997666654 46799999999999965 56778899
Q ss_pred CCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccc
Q 004581 242 DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWA 321 (744)
Q Consensus 242 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 321 (744)
|..|.+||..... ........++..+++|. ++|.
T Consensus 230 Dkki~~yD~~s~~------------------s~~~l~y~~Plstvaf~---------~~G~------------------- 263 (673)
T KOG4378|consen 230 DKKINIYDIRSQA------------------STDRLTYSHPLSTVAFS---------ECGT------------------- 263 (673)
T ss_pred cceEEEeeccccc------------------ccceeeecCCcceeeec---------CCce-------------------
Confidence 9999999998654 22223445667777775 6665
Q ss_pred cCCCcEEEEecCCCeEEEEecCccC
Q 004581 322 HLGVPMLISAGDDTKLFAYCANEFT 346 (744)
Q Consensus 322 ~~~~~~l~s~~~d~~i~~~~~~~~~ 346 (744)
+|+.|...|.|..||++..+
T Consensus 264 -----~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 264 -----YLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred -----EEEeecCCceEEEEecccCC
Confidence 99999999999999998644
No 167
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=8.5e-19 Score=156.67 Aligned_cols=292 Identities=12% Similarity=0.103 Sum_probs=195.7
Q ss_pred eeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCC-CCCCcccccceEEEEeeeee-ccCcceeeeeeccCCCCCCCCcc
Q 004581 224 VNALAAAPSHNRVFSTGSDGQVILYKASCESIGPN-DGLSSSEVIKKWIYVGSVRA-HTHDVRALTVAVPISREDPLPED 301 (744)
Q Consensus 224 v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~ 301 (744)
...+.|+|||..|++-+.|..+.+|++........ ++... ......++. ....|..-++.+-+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~------~~~~~~~r~~eg~tvydy~wYs~M~-------- 117 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLN------FSKHLSYRYQEGETVYDYCWYSRMK-------- 117 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccc------cccceeEEeccCCEEEEEEeeeccc--------
Confidence 45689999999999999999999999986543211 11000 001111111 223344444431111
Q ss_pred cccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeC
Q 004581 302 KVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS 381 (744)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 381 (744)
-..|...++++.+.+.-|.+||.-+.+.-....
T Consensus 118 ------------------s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~----------------------------- 150 (406)
T KOG2919|consen 118 ------------------SDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYR----------------------------- 150 (406)
T ss_pred ------------------cCCCccceeeeccccCceeeeeccccccccchh-----------------------------
Confidence 112344578888888888888886643211000
Q ss_pred CeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeec
Q 004581 382 CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKR 461 (744)
Q Consensus 382 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~ 461 (744)
.++ .+ ..-....+++|+|||..|.+|....|++|++..+......+.....
T Consensus 151 ----~yd--------------------h~-----de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~ 201 (406)
T KOG2919|consen 151 ----AYD--------------------HQ-----DEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTK 201 (406)
T ss_pred ----hhh--------------------hH-----HhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhc
Confidence 000 00 0013346899999999999999999999999653333332222112
Q ss_pred cCCcccccccEEEEee-CCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeC
Q 004581 462 QLPRKLQFAHSMIFSY-DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC 540 (744)
Q Consensus 462 ~~~~~~~~v~~i~~sp-d~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~ 540 (744)
.-.+....+.+++|+| +.+.+++|+....+-||.-..+.++..+-+ |.+.|+.++|.+||+.|.+|..
T Consensus 202 ~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg-----------h~gGvThL~~~edGn~lfsGaR 270 (406)
T KOG2919|consen 202 GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG-----------HGGGVTHLQWCEDGNKLFSGAR 270 (406)
T ss_pred ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecc-----------cCCCeeeEEeccCcCeeccccc
Confidence 1223344788999999 455899999999999999888889998888 9999999999999999999975
Q ss_pred -CCcEEEEECCCcc-eEEEEecCCCCceeE--EeecCCCCCeEEEEecCCeEEEEEcCC-CccccccccccCCccccccc
Q 004581 541 -FGDVYIFNLEIQR-QHWFISRLEGASVTA--AGFPPQNNNVLIITTSSNQVYVFDVEA-KQLGEWSMQHTFVLPRRYQE 615 (744)
Q Consensus 541 -dg~i~iwd~~~~~-~~~~~~~~~~~~v~~--l~~sp~~~~~l~~~~~d~~v~vwd~~~-~~~~~ws~~~~~~~~~~~~~ 615 (744)
|-.|..||+.... .++.+.++-...=.. ....| ++++|++|+.||.|++||+++ +. .+..+..
T Consensus 271 k~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn-----------~~sv~~~ 338 (406)
T KOG2919|consen 271 KDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGN-----------EVSVTGN 338 (406)
T ss_pred CCCeEEEEeehhccchhhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCC-----------ccccccc
Confidence 6789999997543 344444322212223 34568 899999999999999999987 53 2344666
Q ss_pred CCCceEEEEeCCC
Q 004581 616 FPGEVIGLSFSPS 628 (744)
Q Consensus 616 ~~~~v~~i~fspd 628 (744)
+..-+.+++++|-
T Consensus 339 ~sd~vNgvslnP~ 351 (406)
T KOG2919|consen 339 YSDTVNGVSLNPI 351 (406)
T ss_pred ccccccceecCcc
Confidence 7789999999996
No 168
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.84 E-value=4.3e-19 Score=161.91 Aligned_cols=197 Identities=18% Similarity=0.271 Sum_probs=157.6
Q ss_pred CeEEEEecCCeEEEEEecCC-------------CceeEeecccCccCcEEEEEEecCCC-EEEEEeCCCeEEEEEccCCc
Q 004581 98 RRVALACDDGCVRIYRITDS-------------DELIYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKLGY 163 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~-------------~~~~~~~~~~~h~~~V~~~~~s~dg~-~l~t~~~dg~i~vwd~~~~~ 163 (744)
.+.|+-++.|.|.||++... .....+.++.+|.+.=+.++|||-.. .|+||..-+.|++|...+|.
T Consensus 166 ~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~ 245 (440)
T KOG0302|consen 166 VLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS 245 (440)
T ss_pred ceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCc
Confidence 47888899999999998521 12233477889999999999999332 48888888899999998865
Q ss_pred eEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCc---ceEEEeeccccceeEEEEcCCCCEEEe
Q 004581 164 EIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHG---TLLQAHSFHKGDVNALAAAPSHNRVFS 238 (744)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~~ 238 (744)
-... ... ..+|...|-.++|+|.. .|++|+.||.|+|||++.+ .++.+ +.|.+.|+.|.|+.+..+|++
T Consensus 246 W~vd----~~P-f~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLas 319 (440)
T KOG0302|consen 246 WKVD----QRP-FTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLAS 319 (440)
T ss_pred eeec----Ccc-ccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeee
Confidence 3221 111 12699999999999966 8999999999999999987 34444 889999999999999889999
Q ss_pred ecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcccccc
Q 004581 239 TGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYH 318 (744)
Q Consensus 239 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (744)
|+.||++++||++.-+.. .++..+..|..+|+++.|. |..
T Consensus 320 G~DdGt~~iwDLR~~~~~--------------~pVA~fk~Hk~pItsieW~---------p~e----------------- 359 (440)
T KOG0302|consen 320 GGDDGTLSIWDLRQFKSG--------------QPVATFKYHKAPITSIEWH---------PHE----------------- 359 (440)
T ss_pred cCCCceEEEEEhhhccCC--------------CcceeEEeccCCeeEEEec---------ccc-----------------
Confidence 999999999999986531 2477899999999999997 322
Q ss_pred ccccCCCcEEEEecCCCeEEEEecCccC
Q 004581 319 KWAHLGVPMLISAGDDTKLFAYCANEFT 346 (744)
Q Consensus 319 ~w~~~~~~~l~s~~~d~~i~~~~~~~~~ 346 (744)
...|+++|.|.+|.+||+....
T Consensus 360 ------~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 360 ------DSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred ------CceEEeccCCCcEEEEEeeccC
Confidence 2389999999999999997533
No 169
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=2.7e-19 Score=166.90 Aligned_cols=236 Identities=19% Similarity=0.241 Sum_probs=174.9
Q ss_pred cCCeEEEEecCCeEEEEEecCCCceeEeec------------------ccCccCcEEEEEEecCC-CEEEEEeCCCeEEE
Q 004581 96 EDRRVALACDDGCVRIYRITDSDELIYHRS------------------LPRVSGRVLSVTWSADG-NMLYSGSSDGYIRS 156 (744)
Q Consensus 96 ~~~~la~~~~dg~i~iwd~~~~~~~~~~~~------------------~~~h~~~V~~~~~s~dg-~~l~t~~~dg~i~v 156 (744)
.++++|+|+-|..|.|||+.-...+.+... -.+|+..|.+++|+..- ..||+||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 357999999999999999862222111111 23699999999998754 58899999999999
Q ss_pred EEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcce-EEEeeccccceeEEEEcCCC
Q 004581 157 WDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTL-LQAHSFHKGDVNALAAAPSH 233 (744)
Q Consensus 157 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~ 233 (744)
||+.+|++...+. .|...|.++.|+|.. .|++|+.|++|.+.|.+.... -..++ -.+.|-.++|.|..
T Consensus 271 WD~~~g~p~~s~~--------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~s 341 (463)
T KOG0270|consen 271 WDVDTGKPKSSIT--------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHS 341 (463)
T ss_pred EEcCCCCcceehh--------hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCC
Confidence 9999999999998 699999999999987 899999999999999984222 23333 36789999999865
Q ss_pred -CEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCC
Q 004581 234 -NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKP 312 (744)
Q Consensus 234 -~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (744)
..++++..||+|+-+|++.... ++.++..|...|.+|+++.
T Consensus 342 e~~f~~~tddG~v~~~D~R~~~~----------------~vwt~~AHd~~ISgl~~n~---------------------- 383 (463)
T KOG0270|consen 342 ENSFFVSTDDGTVYYFDIRNPGK----------------PVWTLKAHDDEISGLSVNI---------------------- 383 (463)
T ss_pred ceeEEEecCCceEEeeecCCCCC----------------ceeEEEeccCCcceEEecC----------------------
Confidence 5677788899999999998642 4778899999999999861
Q ss_pred ccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEE--eCC-eEEEEEe
Q 004581 313 IDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ--YSC-RLDILSV 389 (744)
Q Consensus 313 ~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~-~i~i~~~ 389 (744)
....++++++.|+.+++|++.....-... ..........+.++.|+-..+.. +.. .+++|++
T Consensus 384 ----------~~p~~l~t~s~d~~Vklw~~~~~~~~~v~-----~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 384 ----------QTPGLLSTASTDKVVKLWKFDVDSPKSVK-----EHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred ----------CCCcceeeccccceEEEEeecCCCCcccc-----cccccccceeecccCCCcceEEEecCccceEEEeec
Confidence 12248999999999999998753321110 11111233455666665443333 322 6889988
Q ss_pred eccC
Q 004581 390 RLEN 393 (744)
Q Consensus 390 ~~~~ 393 (744)
....
T Consensus 449 ~~~~ 452 (463)
T KOG0270|consen 449 FTNS 452 (463)
T ss_pred ccCh
Confidence 7554
No 170
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.83 E-value=4.2e-19 Score=158.94 Aligned_cols=399 Identities=14% Similarity=0.149 Sum_probs=249.9
Q ss_pred CCCCCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccC
Q 004581 1 MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSES 80 (744)
Q Consensus 1 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (744)
+||.|.++|+++.- .+.|=|.+|.+..+.|.. -..|..+.|..|..+
T Consensus 16 fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~------------------------------- 62 (447)
T KOG4497|consen 16 FSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCH------------------------------- 62 (447)
T ss_pred ECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeecccee-------------------------------
Confidence 36677888888865 888889988777766554 466778888887742
Q ss_pred CCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCE-EEEEeCCCeEEEEEc
Q 004581 81 ENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNM-LYSGSSDGYIRSWDA 159 (744)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~-l~t~~~dg~i~vwd~ 159 (744)
.|...+.|+.|.+|++...+-. ..+.....++.+++|||||+. |.+..-|-.|.||.+
T Consensus 63 ------------------ilC~~yk~~~vqvwsl~Qpew~---ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL 121 (447)
T KOG4497|consen 63 ------------------ILCVAYKDPKVQVWSLVQPEWY---CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSL 121 (447)
T ss_pred ------------------eeeeeeccceEEEEEeecceeE---EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEe
Confidence 4667789999999999744333 666777789999999999965 555666999999999
Q ss_pred cCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEE-EcCCCC---EEEEeCCCcceEEEeeccccceeEEEEcCCCCE
Q 004581 160 KLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVS-ADSTGS---VQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNR 235 (744)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s-~~~dg~---i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 235 (744)
.+.+....-. ....+..++|+|||++++ .+.... +.+..-+.-..+..+...+-+.+.+.|+|||+.
T Consensus 122 ~t~~~~~~~~---------pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~ 192 (447)
T KOG4497|consen 122 NTQKGYLLPH---------PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNW 192 (447)
T ss_pred ccceeEEecc---------cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcE
Confidence 8876654432 345568899999995444 332211 222222234455667777778899999999988
Q ss_pred EEeecC--CCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCc
Q 004581 236 VFSTGS--DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPI 313 (744)
Q Consensus 236 l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (744)
|++-.. +-.|..|... -.+..++++ |.++
T Consensus 193 laVwd~~Leykv~aYe~~-----------------------------lG~k~v~ws---------P~~q----------- 223 (447)
T KOG4497|consen 193 LAVWDNVLEYKVYAYERG-----------------------------LGLKFVEWS---------PCNQ----------- 223 (447)
T ss_pred EEEecchhhheeeeeeec-----------------------------cceeEEEec---------cccc-----------
Confidence 776322 3333333322 235566775 4444
Q ss_pred cccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccC
Q 004581 314 DFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLEN 393 (744)
Q Consensus 314 ~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~ 393 (744)
+|+.|+.|+.+++.+--+.+.+...........+....+..-.++
T Consensus 224 -------------flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~---------------------- 268 (447)
T KOG4497|consen 224 -------------FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFS---------------------- 268 (447)
T ss_pred -------------eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcc----------------------
Confidence 999999999999877655443332210000000000000000000
Q ss_pred CcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEee-eccCCcccccccE
Q 004581 394 NVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIIN-KRQLPRKLQFAHS 472 (744)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~ 472 (744)
.-.-...|+.|.|..--.-..... -.+|+... -..++-.++ ....+.....+.-
T Consensus 269 ----------------------~~ql~~~cLsf~p~~~~a~~~~~s-e~~YE~~~--~pv~~~~lkp~tD~pnPk~g~g~ 323 (447)
T KOG4497|consen 269 ----------------------IVQLLHHCLSFTPTDLEAHIWEES-ETIYEQQM--TPVKVHKLKPPTDFPNPKCGAGK 323 (447)
T ss_pred ----------------------hhhhcccccccCCCccccCccccc-hhhhhhhh--cceeeecccCCCCCCCcccccce
Confidence 000111233333321000000000 00111111 001100000 0112222337788
Q ss_pred EEEeeCCCEEEEEeC--CCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC
Q 004581 473 MIFSYDSSQLIIAGH--DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE 550 (744)
Q Consensus 473 i~~spd~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~ 550 (744)
++||+|..++++-.. -+.+.+||++..++-..+.. ..+|....|.|....|+.+.....+++|...
T Consensus 324 lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ------------k~piraf~WdP~~prL~vctg~srLY~W~ps 391 (447)
T KOG4497|consen 324 LAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ------------KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPS 391 (447)
T ss_pred eeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh------------ccceeEEEeCCCCceEEEEcCCceEEEEcCC
Confidence 999999999998765 36899999998777666663 7789999999999999998888889999988
Q ss_pred CcceEEEEecCCCCceeEEeecCCCCCeEEEEecCC
Q 004581 551 IQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSN 586 (744)
Q Consensus 551 ~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~ 586 (744)
.......- . .+-.|..+.|+- +|+.++..+.|.
T Consensus 392 g~~~V~vP-~-~GF~i~~l~W~~-~g~~i~l~~kDa 424 (447)
T KOG4497|consen 392 GPRVVGVP-K-KGFNIQKLQWLQ-PGEFIVLCGKDA 424 (447)
T ss_pred CceEEecC-C-CCceeeeEEecC-CCcEEEEEcCCc
Confidence 86554333 2 346899999999 999999999997
No 171
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.83 E-value=1.2e-17 Score=159.34 Aligned_cols=401 Identities=13% Similarity=0.123 Sum_probs=242.8
Q ss_pred CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCC
Q 004581 98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS 177 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 177 (744)
..++.++.||.+.|-+-. ++.- +....|.+.|.|-.|+|||.-|+|+++||.|++|. ++|-....+.
T Consensus 76 d~~~i~s~DGkf~il~k~-~rVE---~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~-------- 142 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKS-ARVE---RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVV-------- 142 (737)
T ss_pred ceEEEEcCCceEEEeccc-chhh---hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHh--------
Confidence 489999999999998764 3222 78889999999999999999999999999999998 4665555544
Q ss_pred CCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCC
Q 004581 178 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 256 (744)
Q Consensus 178 ~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 256 (744)
.....|+|++|.|+. .++. +..+++.|=-+.....+-..++|.+-|.++.|++..+.+++||.|-..++||.....
T Consensus 143 Q~~~~v~c~~W~p~S~~vl~-c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~-- 219 (737)
T KOG1524|consen 143 QNEESIRCARWAPNSNSIVF-CQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN-- 219 (737)
T ss_pred hcCceeEEEEECCCCCceEE-ecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc--
Confidence 477899999999998 3333 334567776666666677889999999999999999999999999999999987755
Q ss_pred CCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCe
Q 004581 257 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK 336 (744)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~ 336 (744)
+..-..|..+|++++|+ |+ + .++.++. .+
T Consensus 220 ----------------Lf~S~~~ey~ITSva~n---------pd-~------------------------~~~v~S~-nt 248 (737)
T KOG1524|consen 220 ----------------LFTSAAEEYAITSVAFN---------PE-K------------------------DYLLWSY-NT 248 (737)
T ss_pred ----------------cccCChhccceeeeeec---------cc-c------------------------ceeeeee-ee
Confidence 45667899999999997 54 3 4555442 23
Q ss_pred EEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEE--
Q 004581 337 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK-- 414 (744)
Q Consensus 337 i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 414 (744)
+++ ..+..+.+..++||+||..++++.....+.....-+..-...........++..+..
T Consensus 249 ~R~------------------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~~~n~~~t~~~r~~I~vrdV 310 (737)
T KOG1524|consen 249 ARF------------------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQLVSGNLKATSKSRKSITVRDV 310 (737)
T ss_pred eee------------------cCCCccceEEEEEcCCCceeeccccCceEEEeeeehhhhhhccceeEeeccceEEeehh
Confidence 331 112337788999999999988775532222111100000000000000001111110
Q ss_pred -------ecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeecc--CCcccc-------cccEEEEeeC
Q 004581 415 -------SKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQ--LPRKLQ-------FAHSMIFSYD 478 (744)
Q Consensus 415 -------~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~--~~~~~~-------~v~~i~~spd 478 (744)
......+...+ -.-.+|+++....+++|.-... ....+.+.+... +..... ..+--.|+-+
T Consensus 311 ~~~v~d~LE~p~rv~k~s--L~Y~hLvvaTs~qvyiys~knw-ntpiiidgre~tr~lieq~ek~fli~dgsSi~lytye 387 (737)
T KOG1524|consen 311 ATGVQDILEFPQRVVKFS--LGYGHLVVATSLQVYIYSEKNW-NTPIIIDGREDTRNLIEQGEKYFLILDGSSIWLYTYE 387 (737)
T ss_pred hhhHHHHhhCccceeeee--eceeEEEEEeccEEEEEecCCc-cCcEEEeccccchhHhhhhhhheEEecCcEEEEEEec
Confidence 11123333333 2335566667777777765431 111111111000 000000 0000011111
Q ss_pred CC-------------------------EEEEEeC--CCcEEEEEc-cCCceeeeeccCcccccccCCCCCCceEEEEEC-
Q 004581 479 SS-------------------------QLIIAGH--DRRIYVVDV-SSSELLHTFTPCREEHDREIQPSEPPITKMFTS- 529 (744)
Q Consensus 479 ~~-------------------------~l~~~~~--dg~i~v~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s- 529 (744)
|+ .|+.-.. ...+.+||. .+|+... +...-.|...|..++..
T Consensus 388 gR~~~np~~Pg~~~dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~qg---------Dgk~L~hk~~IveIAldq 458 (737)
T KOG1524|consen 388 GRLHLNPRYPGSQIDLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQG---------DGKSLRHKQQIVEIALDQ 458 (737)
T ss_pred CceecCCCCCCcccccccceeeecccceEEeecCCCCeeEEeccCCCCCcccC---------CccccchhhhHHHhHhhc
Confidence 11 1221111 123344444 2332211 11112366666666653
Q ss_pred ---CCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCcc
Q 004581 530 ---SDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 598 (744)
Q Consensus 530 ---pdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~ 598 (744)
++.+.+|.-+.++.++|=.+++......+... +..|..++|+. ..-++++-.|+.+.||=..+..+
T Consensus 459 kG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~Ki-GTmVhtLawnd--ttNiLcglqDt~fsVWy~pn~vy 527 (737)
T KOG1524|consen 459 KGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKI-GTMVHTLAWND--TTNILCGLQDTCFSVWYYPNEVY 527 (737)
T ss_pred cCCCccceEEEEecCCcEEEEeehhcCchhhhhhh-hhhhhhhhhcc--ccceeeeeccceEEEEEcCCcce
Confidence 46678888888888888877654433333222 35789999995 45577888999999998876654
No 172
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.83 E-value=2.1e-19 Score=156.00 Aligned_cols=311 Identities=16% Similarity=0.125 Sum_probs=198.8
Q ss_pred ecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCE
Q 004581 124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSV 203 (744)
Q Consensus 124 ~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i 203 (744)
..+++|.+.|+++.|..+++ |.+|...|.|++|++.+.+....+.. .+...|+.+...|++.+.+-+.|+.+
T Consensus 8 fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~-------~g~~~it~lq~~p~d~l~tqgRd~~L 79 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRL-------FGRLFITNLQSIPNDSLDTQGRDPLL 79 (323)
T ss_pred eEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhh-------hccceeeceeecCCcchhhcCCCceE
Confidence 56779999999999988765 99999999999999999888877764 47788999999999999999999999
Q ss_pred EEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCC-eEEEEEcccCcCCCCCCCCcccccceEEEEe--eeeecc
Q 004581 204 QFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG-QVILYKASCESIGPNDGLSSSEVIKKWIYVG--SVRAHT 280 (744)
Q Consensus 204 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~ 280 (744)
.+|++..+..+. .|.-.++++-|++-. +...+... ....+.-+.... ..........-.++. .-.+..
T Consensus 80 ~lw~ia~s~~i~---i~Si~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde----~h~~D~g~~tqv~i~dd~~~~Kl 150 (323)
T KOG0322|consen 80 ILWTIAYSAFIS---IHSIVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE----THKQDGGDTTQVQIADDSERSKL 150 (323)
T ss_pred EEEEccCcceEE---Eeeeeccccccccce--eccCCCcchhheecCCcccch----hhhhccCccceeEccCchhcccc
Confidence 999998655443 234455666665432 22222211 111111111000 000000000000000 001111
Q ss_pred CcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCC
Q 004581 281 HDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRV 360 (744)
Q Consensus 281 ~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~ 360 (744)
+.+.+..+. .+.....+++.|-++|.+.+||+.+.........
T Consensus 151 gsvmc~~~~------------------------------~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~------- 193 (323)
T KOG0322|consen 151 GSVMCQDKD------------------------------HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQ------- 193 (323)
T ss_pred Cceeeeecc------------------------------ccccceEEEEEeccCCeEEEEEccCCceeecccc-------
Confidence 222222210 0011223688888999999999987532221110
Q ss_pred ccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCC
Q 004581 361 PIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHV 439 (744)
Q Consensus 361 ~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~ 439 (744)
.|.+ ..-...|..++.++.+.+.-..=+. +.+.
T Consensus 194 -------------------------~~kv---------------------~~~~ash~qpvlsldyas~~~rGisgga~d 227 (323)
T KOG0322|consen 194 -------------------------SSKV---------------------ESPNASHKQPVLSLDYASSCDRGISGGADD 227 (323)
T ss_pred -------------------------cccc---------------------ccchhhccCcceeeeechhhcCCcCCCccc
Confidence 0110 0111234466777777654333233 4666
Q ss_pred ceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCC
Q 004581 440 KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPS 519 (744)
Q Consensus 440 ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 519 (744)
.+..|+++...+...+ . .+..-....+..+.+-||++.+|+++.|+.|+||..++..++..++- |
T Consensus 228 kl~~~Sl~~s~gslq~---~-~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky-----------H 292 (323)
T KOG0322|consen 228 KLVMYSLNHSTGSLQI---R-KEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY-----------H 292 (323)
T ss_pred cceeeeeccccCcccc---c-ceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh-----------h
Confidence 7778887752222222 1 11122233788999999999999999999999999999999999998 9
Q ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEEC
Q 004581 520 EPPITKMFTSSDGQWLAAVNCFGDVYIFNL 549 (744)
Q Consensus 520 ~~~i~~l~~spdg~~las~~~dg~i~iwd~ 549 (744)
...|++++|+||...+|+++.|++|.+|++
T Consensus 293 sagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 293 SAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999986
No 173
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=3.4e-18 Score=163.51 Aligned_cols=124 Identities=24% Similarity=0.365 Sum_probs=112.2
Q ss_pred ecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC---eEEEEcCC
Q 004581 124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG---TLVSADST 200 (744)
Q Consensus 124 ~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~s~~~d 200 (744)
+.|.||++.|.|++|+.||.+|++|+.|-.+.|||.-..+.++.+.. +|...|.++.|.|.. .+++|..|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T-------gHtaNIFsvKFvP~tnnriv~sgAgD 116 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIST-------GHTANIFSVKFVPYTNNRIVLSGAGD 116 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeec-------ccccceeEEeeeccCCCeEEEeccCc
Confidence 78899999999999999999999999999999999998889998886 899999999999854 78999999
Q ss_pred CCEEEEeCCC----------cceEEEeeccccceeEEEEcCCC-CEEEeecCCCeEEEEEcccCc
Q 004581 201 GSVQFWDSRH----------GTLLQAHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCES 254 (744)
Q Consensus 201 g~i~vwd~~~----------~~~~~~~~~h~~~v~~l~~~~~~-~~l~~~~~dg~i~iw~~~~~~ 254 (744)
..|+++|+.. .+.+..+..|...|..|+..|++ +.+.+++.||+|+.+|++...
T Consensus 117 k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 117 KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCc
Confidence 9999999984 23445667899999999999998 788899999999999999854
No 174
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.4e-19 Score=188.65 Aligned_cols=234 Identities=17% Similarity=0.258 Sum_probs=187.5
Q ss_pred CeeEEecCCCeEEEEEccCC------ceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCcc
Q 004581 6 GRLFSSSIDGSVSEWDLYDL------KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSE 79 (744)
Q Consensus 6 ~~l~~~~~d~~i~iwd~~~~------~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (744)
+.||.|..||.|.+||.... ..+.++..|.+.|..+.|++.+.
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~------------------------------- 129 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQG------------------------------- 129 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCC-------------------------------
Confidence 45889999999999998752 35567888999999999999983
Q ss_pred CCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeeccc--CccCcEEEEEEecC-CCEEEEEeCCCeEEE
Q 004581 80 SENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLP--RVSGRVLSVTWSAD-GNMLYSGSSDGYIRS 156 (744)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~V~~~~~s~d-g~~l~t~~~dg~i~v 156 (744)
+.||+|+.||.|.|||+..-+.. ..+. .-.+.|.+++|+.. ...|++++.+|.+.|
T Consensus 130 ------------------nlLASGa~~geI~iWDlnn~~tP---~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~i 188 (1049)
T KOG0307|consen 130 ------------------NLLASGADDGEILIWDLNKPETP---FTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVI 188 (1049)
T ss_pred ------------------ceeeccCCCCcEEEeccCCcCCC---CCCCCCCCcccceEeccchhhhHHhhccCCCCCcee
Confidence 48999999999999999754333 2221 24568999999864 457889999999999
Q ss_pred EEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCC---CEEEEeCCC-cceEEEeeccccceeEEEEc
Q 004581 157 WDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTG---SVQFWDSRH-GTLLQAHSFHKGDVNALAAA 230 (744)
Q Consensus 157 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg---~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~ 230 (744)
||++..+.+-.+... .....+..+.|+|++ +|++++.|. .|.+||++. ...++.+++|...|.++.|+
T Consensus 189 WDlr~~~pii~ls~~------~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc 262 (1049)
T KOG0307|consen 189 WDLRKKKPIIKLSDT------PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWC 262 (1049)
T ss_pred ccccCCCcccccccC------CCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccC
Confidence 999998888777632 223568899999999 676666554 499999985 56778899999999999999
Q ss_pred CCC-CEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCC
Q 004581 231 PSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGR 309 (744)
Q Consensus 231 ~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~ 309 (744)
+.+ .+|++++.|+.|.+|+.++++. +..+....+.+..+.|+
T Consensus 263 ~~D~~lllSsgkD~~ii~wN~~tgEv-----------------l~~~p~~~nW~fdv~w~-------------------- 305 (1049)
T KOG0307|consen 263 PQDPRLLLSSGKDNRIICWNPNTGEV-----------------LGELPAQGNWCFDVQWC-------------------- 305 (1049)
T ss_pred CCCchhhhcccCCCCeeEecCCCceE-----------------eeecCCCCcceeeeeec--------------------
Confidence 976 8899999999999999999773 56666666677777775
Q ss_pred CCCccccccccccCCCcEEEEecCCCeEEEEecCccC
Q 004581 310 EKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT 346 (744)
Q Consensus 310 ~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~ 346 (744)
..+..+++.++.||.|.+|.+....
T Consensus 306 ------------pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 306 ------------PRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ------------CCCcchhhhheeccceeeeeeecCC
Confidence 2233489999999999999998654
No 175
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=6e-18 Score=152.71 Aligned_cols=286 Identities=16% Similarity=0.121 Sum_probs=200.2
Q ss_pred CeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCC
Q 004581 6 GRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD 85 (744)
Q Consensus 6 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (744)
.++|++...|.|++||..+++.+..|++|...+..|+|..+..
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds------------------------------------- 83 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDS------------------------------------- 83 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCC-------------------------------------
Confidence 3588888999999999999999999999999999999987531
Q ss_pred cccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCcc-CcEEEEEEecCCCEEEEEeC----CCeEEEEEcc
Q 004581 86 SDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVS-GRVLSVTWSADGNMLYSGSS----DGYIRSWDAK 160 (744)
Q Consensus 86 ~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~V~~~~~s~dg~~l~t~~~----dg~i~vwd~~ 160 (744)
...+.+++.||+|++||+....+... ..+.+|. .+..|++-+-.++.+++|.. +-.|.+||++
T Consensus 84 -----------~h~v~s~ssDG~Vr~wD~Rs~~e~a~-~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR 151 (376)
T KOG1188|consen 84 -----------PHGVISCSSDGTVRLWDIRSQAESAR-ISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVR 151 (376)
T ss_pred -----------CCeeEEeccCCeEEEEEeecchhhhh-eeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEec
Confidence 04788999999999999986555422 3444555 56778887777888888864 6689999998
Q ss_pred CCce-EEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCc----ceEEEeeccccceeEEEEcCCC
Q 004581 161 LGYE-IYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHG----TLLQAHSFHKGDVNALAAAPSH 233 (744)
Q Consensus 161 ~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~l~~~~~~ 233 (744)
..+. +..+.. .|...|+++.|+|.. .|++|+.||-|.++|++.. .++.++ .|...|.++.|..++
T Consensus 152 ~~qq~l~~~~e-------SH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 152 SEQQLLRQLNE-------SHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKK 223 (376)
T ss_pred cccchhhhhhh-------hccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeeecCC
Confidence 8776 555543 699999999999988 8999999999999999743 223333 367789999999877
Q ss_pred -CEEEeecCCCeEEEEEcccCcCCCCCC---CCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCC
Q 004581 234 -NRVFSTGSDGQVILYKASCESIGPNDG---LSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGR 309 (744)
Q Consensus 234 -~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~ 309 (744)
+.|.+-+...+..+|+++.+....... +........|.+-..+..|.
T Consensus 224 ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~----------------------------- 274 (376)
T KOG1188|consen 224 YKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHS----------------------------- 274 (376)
T ss_pred cceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeeccc-----------------------------
Confidence 568888999999999998875311100 00000011111111111111
Q ss_pred CCCccccccccccCCCcEEEEecC-CCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeC--CeEEE
Q 004581 310 EKPIDFSYHKWAHLGVPMLISAGD-DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS--CRLDI 386 (744)
Q Consensus 310 ~~~~~~~~~~w~~~~~~~l~s~~~-d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~i~i 386 (744)
+.+....+.++. -+...++.+..............++..+...++++.|...+.++.++. +.+.+
T Consensus 275 ------------~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~ 342 (376)
T KOG1188|consen 275 ------------PGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQA 342 (376)
T ss_pred ------------CCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEE
Confidence 112234444444 566666666543333333333455666778899999988888888774 58888
Q ss_pred EEe
Q 004581 387 LSV 389 (744)
Q Consensus 387 ~~~ 389 (744)
|..
T Consensus 343 Wk~ 345 (376)
T KOG1188|consen 343 WKV 345 (376)
T ss_pred Eec
Confidence 885
No 176
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.80 E-value=3.4e-18 Score=148.57 Aligned_cols=298 Identities=15% Similarity=0.217 Sum_probs=197.9
Q ss_pred CCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEee-ccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCC
Q 004581 178 GPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHS-FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 256 (744)
Q Consensus 178 ~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 256 (744)
+|...|+++.|-.+++|++|..-|.|.+|++++.+.+..++ .|...|+.+.--|+ ..+.+-+.|+.+.+|++....
T Consensus 12 p~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~-- 88 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSA-- 88 (323)
T ss_pred cccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcc--
Confidence 68899999999999999999999999999999998888888 67788999999987 468899999999999998744
Q ss_pred CCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCC-
Q 004581 257 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT- 335 (744)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~- 335 (744)
....|+-.+.++.|... -+...+...
T Consensus 89 ------------------~i~i~Si~~nslgFCrf-----------------------------------Sl~~~~k~~e 115 (323)
T KOG0322|consen 89 ------------------FISIHSIVVNSLGFCRF-----------------------------------SLVKKPKNSE 115 (323)
T ss_pred ------------------eEEEeeeeccccccccc-----------------------------------eeccCCCcch
Confidence 23445555666666410 011111110
Q ss_pred eEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEe
Q 004581 336 KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKS 415 (744)
Q Consensus 336 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (744)
.+..|+-+......... . ..-. .+.+- ... ..
T Consensus 116 qll~yp~rgsde~h~~D---~------g~~t----------------qv~i~--dd~---------------------~~ 147 (323)
T KOG0322|consen 116 QLLEYPSRGSDETHKQD---G------GDTT----------------QVQIA--DDS---------------------ER 147 (323)
T ss_pred hheecCCcccchhhhhc---c------Cccc----------------eeEcc--Cch---------------------hc
Confidence 11111111110000000 0 0000 00000 000 00
Q ss_pred cCCCCeEEEEEc-CCCC-E-EEEE-cCCceEEEEeecCCCCCce---EEeeeccCCcccccccEEEEeeCCCEEEEEeCC
Q 004581 416 KASRKIICSTIS-NSGM-L-FAYS-DHVKPSLFELKKGKVGQGE---WIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD 488 (744)
Q Consensus 416 ~~~~~i~~~~~s-~~g~-~-la~~-~~~~v~l~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~d 488 (744)
...+.+.|..+. .+++ + +++| .++.+.+|++..++..+.+ |... .....|..++.++.|.+.-..=++|+.+
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~-~~~ash~qpvlsldyas~~~rGisgga~ 226 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVE-SPNASHKQPVLSLDYASSCDRGISGGAD 226 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccc-cchhhccCcceeeeechhhcCCcCCCcc
Confidence 111233333322 1232 3 3445 8899999999874322221 1111 2334566689999998776777888888
Q ss_pred CcEEEEEccC--Cce--eeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCC
Q 004581 489 RRIYVVDVSS--SEL--LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGA 564 (744)
Q Consensus 489 g~i~v~d~~~--~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~ 564 (744)
..+..|+++. +.+ ...+.- ..-.|..+.+-||++.+|+++.|+.|+||+.++.+++..+. +|.+
T Consensus 227 dkl~~~Sl~~s~gslq~~~e~~l-----------knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk-yHsa 294 (323)
T KOG0322|consen 227 DKLVMYSLNHSTGSLQIRKEITL-----------KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK-YHSA 294 (323)
T ss_pred ccceeeeeccccCcccccceEEe-----------cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh-hhhc
Confidence 8899999862 322 111221 24558889999999999999999999999999999988874 5778
Q ss_pred ceeEEeecCCCCCeEEEEecCCeEEEEEc
Q 004581 565 SVTAAGFPPQNNNVLIITTSSNQVYVFDV 593 (744)
Q Consensus 565 ~v~~l~~sp~~~~~l~~~~~d~~v~vwd~ 593 (744)
.|.+++|+| +.+.+|.++.|++|-+|++
T Consensus 295 gvn~vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 295 GVNAVAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred ceeEEEeCC-CCchhhhccCCceEEeeec
Confidence 999999999 8899999999999999986
No 177
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.79 E-value=7.2e-18 Score=148.37 Aligned_cols=238 Identities=22% Similarity=0.249 Sum_probs=175.1
Q ss_pred eEEEEEccC---------CceeEEee-ccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCC
Q 004581 16 SVSEWDLYD---------LKQKIVLQ-SIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD 85 (744)
Q Consensus 16 ~i~iwd~~~---------~~~~~~~~-~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (744)
.+.||.+.. .+++..|. .+-+.|.|+.|.|+++
T Consensus 94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~------------------------------------- 136 (370)
T KOG1007|consen 94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD------------------------------------- 136 (370)
T ss_pred eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC-------------------------------------
Confidence 567998864 33444555 4557999999999984
Q ss_pred cccccccccccCCeEEEEecCCeEEEEEecCCCceeEe---ecccCccCcEEEEEEec--CCCEEEEEeCCCeEEEEEcc
Q 004581 86 SDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYH---RSLPRVSGRVLSVTWSA--DGNMLYSGSSDGYIRSWDAK 160 (744)
Q Consensus 86 ~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~---~~~~~h~~~V~~~~~s~--dg~~l~t~~~dg~i~vwd~~ 160 (744)
.||+-. |..|.+|++..+..+... ..-..|+...++-+||| ||+.+++.+ |++++.||++
T Consensus 137 -------------klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~R 201 (370)
T KOG1007|consen 137 -------------KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLR 201 (370)
T ss_pred -------------eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEcc
Confidence 555544 789999999865542110 11124677889999998 888888875 7799999999
Q ss_pred CCceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCC-cceEEEeeccccceeEEEEcCCC-CEE
Q 004581 161 LGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRH-GTLLQAHSFHKGDVNALAAAPSH-NRV 236 (744)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~-~~l 236 (744)
+..+...+.. .|...|..+.|+|+. .|++++.||.|+|||.+. ..+++++.+|...|.++.|+|.. ++|
T Consensus 202 T~~~~~sI~d-------AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLi 274 (370)
T KOG1007|consen 202 TMKKNNSIED-------AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLI 274 (370)
T ss_pred chhhhcchhh-------hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEE
Confidence 9988888874 688999999999998 799999999999999985 66789999999999999999964 678
Q ss_pred EeecCCCeEEEEEcccCcCC----CCCCCCccc-----cc---ceEEEEeeeeeccCcceeeeeeccCCCCCCCCccccc
Q 004581 237 FSTGSDGQVILYKASCESIG----PNDGLSSSE-----VI---KKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVK 304 (744)
Q Consensus 237 ~~~~~dg~i~iw~~~~~~~~----~~~~~~~~~-----~~---~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~ 304 (744)
++++.|..|.+|....-... ..+...... .. -.=-.+..+..|...|++++|+ .
T Consensus 275 Ls~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWS---------s----- 340 (370)
T KOG1007|consen 275 LSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWS---------S----- 340 (370)
T ss_pred EecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeec---------c-----
Confidence 89999999999987643210 000000000 00 0011244667899999999996 1
Q ss_pred ccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCc
Q 004581 305 RSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 344 (744)
Q Consensus 305 ~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~ 344 (744)
...| .+++-+.||.+.+-.+..
T Consensus 341 ------------adPW------iFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 341 ------------ADPW------IFASLSYDGRVIISSVPR 362 (370)
T ss_pred ------------CCCe------eEEEeccCceEEeecCCh
Confidence 1224 899999999998866654
No 178
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.3e-17 Score=150.60 Aligned_cols=288 Identities=15% Similarity=0.151 Sum_probs=189.6
Q ss_pred CEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecC-C--eEEEEcCCCCEEEEeCCCcceEE--Ee
Q 004581 143 NMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRC-G--TLVSADSTGSVQFWDSRHGTLLQ--AH 217 (744)
Q Consensus 143 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~--~l~s~~~dg~i~vwd~~~~~~~~--~~ 217 (744)
..+|++...|.|++||..+|+.+..++ +++..+..+.|..+ + .+.+++.||+|++||+++..... .+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk--------~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~ 112 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFK--------GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISW 112 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheec--------CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheec
Confidence 568888899999999999999999998 68888888999875 3 79999999999999999865443 34
Q ss_pred eccc-cceeEEEEcCCCCEEEeecC----CCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccC
Q 004581 218 SFHK-GDVNALAAAPSHNRVFSTGS----DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPI 292 (744)
Q Consensus 218 ~~h~-~~v~~l~~~~~~~~l~~~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 292 (744)
..+. .+..|++....++.+++|.. |-.|.+||++..++. .-.....|..+|+++.|.
T Consensus 113 ~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~---------------l~~~~eSH~DDVT~lrFH--- 174 (376)
T KOG1188|consen 113 TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL---------------LRQLNESHNDDVTQLRFH--- 174 (376)
T ss_pred cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccch---------------hhhhhhhccCcceeEEec---
Confidence 4555 56778888777887887753 778999999986631 012346799999999997
Q ss_pred CCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecC
Q 004581 293 SREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSH 372 (744)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 372 (744)
| .+.++|++|+.||.+.+||+........
T Consensus 175 ------P-----------------------~~pnlLlSGSvDGLvnlfD~~~d~EeDa---------------------- 203 (376)
T KOG1188|consen 175 ------P-----------------------SDPNLLLSGSVDGLVNLFDTKKDNEEDA---------------------- 203 (376)
T ss_pred ------C-----------------------CCCCeEEeecccceEEeeecCCCcchhh----------------------
Confidence 2 2345999999999999999875210000
Q ss_pred CeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCC
Q 004581 373 TSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVG 452 (744)
Q Consensus 373 ~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~ 452 (744)
T Consensus 204 -------------------------------------------------------------------------------- 203 (376)
T KOG1188|consen 204 -------------------------------------------------------------------------------- 203 (376)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEeeeccCCcccccccEEEEeeCC-CEEEEEeCCCcEEEEEccCCceeeeeccCcccc--cccCCCCCCceEEEEEC
Q 004581 453 QGEWIINKRQLPRKLQFAHSMIFSYDS-SQLIIAGHDRRIYVVDVSSSELLHTFTPCREEH--DREIQPSEPPITKMFTS 529 (744)
Q Consensus 453 ~~~~~~~~~~~~~~~~~v~~i~~spd~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~l~~s 529 (744)
+ .....+...|..+.|..++ ++|.+-+..++..+|+++.+.....+..+.... .+... ....+-..-..
T Consensus 204 --L-----~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~-~~dY~I~~~~~ 275 (376)
T KOG1188|consen 204 --L-----LHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKED-NCDYVINEHSP 275 (376)
T ss_pred --H-----HHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhh-hhhheeecccC
Confidence 0 0011122245555555444 345556666677777777666444443211000 00000 01111111112
Q ss_pred CCCCEEEEEeC-CCcEEEEECC------CcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCC
Q 004581 530 SDGQWLAAVNC-FGDVYIFNLE------IQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 596 (744)
Q Consensus 530 pdg~~las~~~-dg~i~iwd~~------~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~ 596 (744)
.++..++.++. .+...++-+. ..+....+.++|..-|+++.|.. .+.+|.+|+.||.+.+|..+..
T Consensus 276 ~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~-~~~~l~TGGEDG~l~~Wk~~da 348 (376)
T KOG1188|consen 276 GDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDV-KNDVLYTGGEDGLLQAWKVEDA 348 (376)
T ss_pred CCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhc-ccceeeccCCCceEEEEecCCc
Confidence 24445555544 5556655443 23344455555667789999987 8899999999999999997544
No 179
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=2.9e-18 Score=165.08 Aligned_cols=202 Identities=22% Similarity=0.321 Sum_probs=163.6
Q ss_pred CCCCCeeEEecCCCeEEEEEcc--------CCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCC
Q 004581 2 GLPGGRLFSSSIDGSVSEWDLY--------DLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSD 73 (744)
Q Consensus 2 ~~~~~~l~~~~~d~~i~iwd~~--------~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (744)
.+....|++++.||+|.+|+++ .-+++.+|.+|.++|-|+++.+++
T Consensus 303 ~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~-------------------------- 356 (577)
T KOG0642|consen 303 HPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNG-------------------------- 356 (577)
T ss_pred CCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCc--------------------------
Confidence 3456679999999999999993 246788999999999999999999
Q ss_pred CCcCccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecC-------CCceeEeecccCccCcEEEEEEecCCCEEE
Q 004581 74 DHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITD-------SDELIYHRSLPRVSGRVLSVTWSADGNMLY 146 (744)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~-------~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~ 146 (744)
..+.+|+.||+|+.|++.. .........+.||.+.|..+++|+....|+
T Consensus 357 ------------------------~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Ll 412 (577)
T KOG0642|consen 357 ------------------------EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLL 412 (577)
T ss_pred ------------------------eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccccee
Confidence 6999999999999997651 122233467889999999999999999999
Q ss_pred EEeCCCeEEEEEccCCceEEEEEec-----------------------------------------CCC---CCCCCcee
Q 004581 147 SGSSDGYIRSWDAKLGYEIYRITVG-----------------------------------------LGG---LGSGPELC 182 (744)
Q Consensus 147 t~~~dg~i~vwd~~~~~~~~~~~~~-----------------------------------------~~~---~~~~~~~~ 182 (744)
+++.||+++.|+...... ..+... ... ........
T Consensus 413 scs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~ 491 (577)
T KOG0642|consen 413 SCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQ 491 (577)
T ss_pred eecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCc
Confidence 999999999999754433 111100 000 00011234
Q ss_pred EEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCc
Q 004581 183 IWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 254 (744)
Q Consensus 183 v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~ 254 (744)
+..+.+.|.+ ..+++..|+.|+++|..++.++.....|...++++++.|+|.+|++++.|+.+++|.+....
T Consensus 492 in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 492 INKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred cceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 5566777777 88999999999999999999999999999999999999999999999999999999987654
No 180
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.79 E-value=1.8e-17 Score=148.27 Aligned_cols=214 Identities=18% Similarity=0.256 Sum_probs=172.7
Q ss_pred CCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEc-
Q 004581 419 RKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDV- 496 (744)
Q Consensus 419 ~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~- 496 (744)
.+|+|.||++|+..+|++ ....+.||..... .+|.. ...+..|...++.++|+|..++|++++.|..-+||..
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~----~~w~~-~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGA----DLWEP-AHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCC----CCcee-ceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 789999999999999997 6669999998752 22322 2667788889999999999999999999999999998
Q ss_pred cCCc--eeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEE---EecCCCCceeEEee
Q 004581 497 SSSE--LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWF---ISRLEGASVTAAGF 571 (744)
Q Consensus 497 ~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~l~~ 571 (744)
..++ +...+.. ++...+++.|+|.++.+|+|+....|.||-++....-+. +...+.+.|++++|
T Consensus 86 ~~~~WkptlvLlR-----------iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldW 154 (361)
T KOG1523|consen 86 SGGTWKPTLVLLR-----------INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDW 154 (361)
T ss_pred CCCeeccceeEEE-----------eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeec
Confidence 4443 3333343 789999999999999999999999999999987665432 33445578999999
Q ss_pred cCCCCCeEEEEecCCeEEEEEc-----C-CCccccccccccC-CcccccccCCCceEEEEeCCCCCCcEEEEEcCceEEE
Q 004581 572 PPQNNNVLIITTSSNQVYVFDV-----E-AKQLGEWSMQHTF-VLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCV 644 (744)
Q Consensus 572 sp~~~~~l~~~~~d~~v~vwd~-----~-~~~~~~ws~~~~~-~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~~~~ 644 (744)
+| ++-+|++|+.|+..+||.. + .-..++|..+.++ .+..++....+.+.++.|+|+|+ ..-|+...+.+++
T Consensus 155 hp-nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hds~v~~ 232 (361)
T KOG1523|consen 155 HP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHDSTVSF 232 (361)
T ss_pred cC-CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCCCceEE
Confidence 99 9999999999999999975 2 3346778888887 46666666679999999999964 4567788888999
Q ss_pred EeCCCC
Q 004581 645 IDFGRP 650 (744)
Q Consensus 645 ~~~~~~ 650 (744)
.|...|
T Consensus 233 ~da~~p 238 (361)
T KOG1523|consen 233 VDAAGP 238 (361)
T ss_pred eecCCC
Confidence 997664
No 181
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=3.8e-16 Score=134.20 Aligned_cols=190 Identities=18% Similarity=0.217 Sum_probs=147.5
Q ss_pred CCCCCCeeEEecCCCeEEEEEccC---------C-ceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCC
Q 004581 1 MGLPGGRLFSSSIDGSVSEWDLYD---------L-KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSN 70 (744)
Q Consensus 1 ~~~~~~~l~~~~~d~~i~iwd~~~---------~-~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (744)
|+|++..|+.|..+|+|-+..+++ | ..+..+++|.++|..|+|..+
T Consensus 18 ~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~------------------------ 73 (325)
T KOG0649|consen 18 ISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD------------------------ 73 (325)
T ss_pred hCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh------------------------
Confidence 588999999999999999998864 2 344556899999999999942
Q ss_pred CCCCCcCccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCc-eeE----eecccCcc-----CcEEEEEEec
Q 004581 71 DSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDE-LIY----HRSLPRVS-----GRVLSVTWSA 140 (744)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~-~~~----~~~~~~h~-----~~V~~~~~s~ 140 (744)
+|.+|++ |.|+=|......+ ... ......|. -.|+++...|
T Consensus 74 ----------------------------~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP 124 (325)
T KOG0649|consen 74 ----------------------------FLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP 124 (325)
T ss_pred ----------------------------heeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEecc
Confidence 5666665 9999998863222 100 01122233 3589999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEE-ecCCeEEEEcCCCCEEEEeCCCcceEEEeec
Q 004581 141 DGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLS-LRCGTLVSADSTGSVQFWDSRHGTLLQAHSF 219 (744)
Q Consensus 141 dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 219 (744)
..+-+++++.|+.+..||+++|+..+.++ +|.+.|.++.- +.++.+++|++||++++||.+++++++.+..
T Consensus 125 ~enSi~~AgGD~~~y~~dlE~G~i~r~~r--------GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~ 196 (325)
T KOG0649|consen 125 SENSILFAGGDGVIYQVDLEDGRIQREYR--------GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEP 196 (325)
T ss_pred CCCcEEEecCCeEEEEEEecCCEEEEEEc--------CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEecc
Confidence 88888888899999999999999999998 89999999988 4555999999999999999999999887753
Q ss_pred cc----------cceeEEEEcCCCCEEEeecCCCeEEEEEcccCc
Q 004581 220 HK----------GDVNALAAAPSHNRVFSTGSDGQVILYKASCES 254 (744)
Q Consensus 220 h~----------~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~ 254 (744)
.. ..|-+++.+ ..++++|+ ...+.+|.++...
T Consensus 197 yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwhLrsse 238 (325)
T KOG0649|consen 197 YKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHLRSSE 238 (325)
T ss_pred ccChhhcCcccCceeEEEecc--CceEEecC-CCceeEEeccCCC
Confidence 21 235556554 55788775 4569999998865
No 182
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=1.1e-15 Score=153.67 Aligned_cols=145 Identities=14% Similarity=0.151 Sum_probs=96.6
Q ss_pred eEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEe-CCCeEEEEEcc-CCceEEEEEecCCCCC
Q 004581 99 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGS-SDGYIRSWDAK-LGYEIYRITVGLGGLG 176 (744)
Q Consensus 99 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~-~dg~i~vwd~~-~~~~~~~~~~~~~~~~ 176 (744)
..++...++.|.+|++.+...+.....+. +.+....++++|++++|++++ .++.|.+|++. +|+....-..
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~------ 76 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES------ 76 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee------
Confidence 34445778999999997545554445554 345677899999999987765 47899999996 3432211111
Q ss_pred CCCceeEEEEEEecCC-eEEEEc-CCCCEEEEeCCC-cc---eEEEeeccccceeEEEEcCCCCEEEeec-CCCeEEEEE
Q 004581 177 SGPELCIWSLLSLRCG-TLVSAD-STGSVQFWDSRH-GT---LLQAHSFHKGDVNALAAAPSHNRVFSTG-SDGQVILYK 249 (744)
Q Consensus 177 ~~~~~~v~~~~~~~~~-~l~s~~-~dg~i~vwd~~~-~~---~~~~~~~h~~~v~~l~~~~~~~~l~~~~-~dg~i~iw~ 249 (744)
........++|+|++ .+++++ .++.|.+|++++ +. .+..+.+ .....+++++|+++++++++ .++.|.+||
T Consensus 77 -~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d 154 (330)
T PRK11028 77 -PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFT 154 (330)
T ss_pred -cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEE
Confidence 122235679999999 555544 588999999874 32 2333322 33467788899988886554 468888888
Q ss_pred ccc
Q 004581 250 ASC 252 (744)
Q Consensus 250 ~~~ 252 (744)
+..
T Consensus 155 ~~~ 157 (330)
T PRK11028 155 LSD 157 (330)
T ss_pred ECC
Confidence 765
No 183
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=4.2e-18 Score=163.96 Aligned_cols=266 Identities=16% Similarity=0.228 Sum_probs=182.0
Q ss_pred CCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCC--------cceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEE
Q 004581 178 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH--------GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248 (744)
Q Consensus 178 ~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~--------~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw 248 (744)
.|...|..+.|.+-. .|++++.||.|++|+++. -+++.++++|.++|.|+++.+++..+++||.||+|+.|
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW 371 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence 578889999999877 999999999999999932 35688999999999999999999999999999999999
Q ss_pred EcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEE
Q 004581 249 KASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPML 328 (744)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l 328 (744)
++.... -+.+. ...-.....+.||+..|..++++ + ....|
T Consensus 372 ~~p~n~-dp~ds------~dp~vl~~~l~Ghtdavw~l~~s---------~------------------------~~~~L 411 (577)
T KOG0642|consen 372 NLPPNQ-DPDDS------YDPSVLSGTLLGHTDAVWLLALS---------S------------------------TKDRL 411 (577)
T ss_pred ccCCCC-Ccccc------cCcchhccceeccccceeeeeec---------c------------------------cccce
Confidence 887332 11110 01112356789999999999996 2 22379
Q ss_pred EEecCCCeEEEEecCccCC--CCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCC
Q 004581 329 ISAGDDTKLFAYCANEFTK--FSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHAS 406 (744)
Q Consensus 329 ~s~~~d~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~ 406 (744)
++++.||+++.|+...... +.... .......+.+......+...+
T Consensus 412 lscs~DgTvr~w~~~~~~~~~f~~~~--------e~g~Plsvd~~ss~~a~~~~s------------------------- 458 (577)
T KOG0642|consen 412 LSCSSDGTVRLWEPTEESPCTFGEPK--------EHGYPLSVDRTSSRPAHSLAS------------------------- 458 (577)
T ss_pred eeecCCceEEeeccCCcCccccCCcc--------ccCCcceEeeccchhHhhhhh-------------------------
Confidence 9999999999999876443 11100 000011111110000000000
Q ss_pred cceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEe
Q 004581 407 TSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG 486 (744)
Q Consensus 407 ~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~ 486 (744)
..-+...++++.. .....++.-....-+.....+..+...|.+.+.+++.
T Consensus 459 -----------------------------~~~~~~~~~~~ev-~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~h 508 (577)
T KOG0642|consen 459 -----------------------------FRFGYTSIDDMEV-VSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAH 508 (577)
T ss_pred -----------------------------cccccccchhhhh-hhheeeccccCCCcccccCccceEEecCCCCeeEecc
Confidence 0000001111111 0011110000111122223677888899999999999
Q ss_pred CCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEE
Q 004581 487 HDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWF 557 (744)
Q Consensus 487 ~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~ 557 (744)
.|+.|+++|..+++++..... |...++++++.|+|-+|++++.|+.+++|.++...+...
T Consensus 509 ed~~Ir~~dn~~~~~l~s~~a-----------~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 509 EDRSIRFFDNKTGKILHSMVA-----------HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred cCCceecccccccccchheee-----------ccceecceeecCCCceEEeecCCceeehhhccchheeec
Confidence 999999999999999988887 899999999999999999999999999999987665433
No 184
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.78 E-value=4.1e-17 Score=143.73 Aligned_cols=232 Identities=21% Similarity=0.271 Sum_probs=172.8
Q ss_pred CCCeEEEEEccCC--cee-EEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccc
Q 004581 13 IDGSVSEWDLYDL--KQK-IVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDEL 89 (744)
Q Consensus 13 ~d~~i~iwd~~~~--~~~-~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (744)
.|+.|.+.++... ... ..|..|.+.||.++-+|..+.
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~---------------------------------------- 77 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQR---------------------------------------- 77 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCc----------------------------------------
Confidence 4677777776643 222 246668899999999998753
Q ss_pred cccccccCCeEEEEecC-------CeEEEEEecCCCc------eeEeeccc-CccCcEEEEEEecCCCEEEEEeCCCeEE
Q 004581 90 HEQSVVEDRRVALACDD-------GCVRIYRITDSDE------LIYHRSLP-RVSGRVLSVTWSADGNMLYSGSSDGYIR 155 (744)
Q Consensus 90 ~~~~~~~~~~la~~~~d-------g~i~iwd~~~~~~------~~~~~~~~-~h~~~V~~~~~s~dg~~l~t~~~dg~i~ 155 (744)
.|+++..+ -.+-||.+..... +.....|. .+-+.|.|+.|.|++..|++-. |..|.
T Consensus 78 ---------ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~ 147 (370)
T KOG1007|consen 78 ---------ILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIV 147 (370)
T ss_pred ---------eEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceE
Confidence 44444331 2477999863221 22234444 4567999999999999999876 77999
Q ss_pred EEEccCCce-EEEEEecCCCCCCCCceeEEEEEEec--CCeEEEEcCCCCEEEEeCCCcceEEEe-eccccceeEEEEcC
Q 004581 156 SWDAKLGYE-IYRITVGLGGLGSGPELCIWSLLSLR--CGTLVSADSTGSVQFWDSRHGTLLQAH-SFHKGDVNALAAAP 231 (744)
Q Consensus 156 vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~ 231 (744)
+|+++.+.. +..+.... ...+....++-+|+| |+.-+....|++++.||+++..+...+ .+|...|..+.|+|
T Consensus 148 l~~l~ess~~vaev~ss~---s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNp 224 (370)
T KOG1007|consen 148 LWSLDESSKIVAEVLSSE---SAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNP 224 (370)
T ss_pred EEEcccCcchheeecccc---cccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCC
Confidence 999988776 44443221 124667788889998 456666677999999999987776665 46888999999999
Q ss_pred CCC-EEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCC
Q 004581 232 SHN-RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGRE 310 (744)
Q Consensus 232 ~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~ 310 (744)
+-+ +|++|+.||.|++||.+.... ++..+.+|++.|.++.|.+
T Consensus 225 nkq~~lvt~gDdgyvriWD~R~tk~----------------pv~el~~HsHWvW~VRfn~-------------------- 268 (370)
T KOG1007|consen 225 NKQHILVTCGDDGYVRIWDTRKTKF----------------PVQELPGHSHWVWAVRFNP-------------------- 268 (370)
T ss_pred CceEEEEEcCCCccEEEEeccCCCc----------------cccccCCCceEEEEEEecC--------------------
Confidence 865 577899999999999987663 4778899999999999972
Q ss_pred CCccccccccccCCCcEEEEecCCCeEEEEecCcc
Q 004581 311 KPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEF 345 (744)
Q Consensus 311 ~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~ 345 (744)
...+++++++.|..|.+|.....
T Consensus 269 ------------~hdqLiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 269 ------------EHDQLILSGGSDSAVNLSCASSV 291 (370)
T ss_pred ------------ccceEEEecCCCceeEEEecccc
Confidence 23348999999999999987653
No 185
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=3.2e-18 Score=161.63 Aligned_cols=316 Identities=18% Similarity=0.207 Sum_probs=228.4
Q ss_pred eecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC---eEEEEcC
Q 004581 123 HRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG---TLVSADS 199 (744)
Q Consensus 123 ~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~s~~~ 199 (744)
...|..|.+.|..|.|+..|..|++|+.|..|.+||+..+.....+.. +|...|....|.|.. .+++++.
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S-------GH~~NvfQaKFiP~s~d~ti~~~s~ 207 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES-------GHCNNVFQAKFIPFSGDRTIVTSSR 207 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccccc-------ccccchhhhhccCCCCCcCceeccc
Confidence 467889999999999999999999999999999999999999888875 799999988898865 8999999
Q ss_pred CCCEEEEeCCC-cce--EEEeeccccceeEEEEcCCC-CEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEee
Q 004581 200 TGSVQFWDSRH-GTL--LQAHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGS 275 (744)
Q Consensus 200 dg~i~vwd~~~-~~~--~~~~~~h~~~v~~l~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (744)
||.+++=.+.. +.+ ...+..|.++|..++.-|+. ..|.+++.|+.+.-+|++...... . ...
T Consensus 208 dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~-----------~---~~c 273 (559)
T KOG1334|consen 208 DGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE-----------K---FVC 273 (559)
T ss_pred cCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccc-----------e---eee
Confidence 99999877653 332 24556799999999999976 568899999999999998765311 1 112
Q ss_pred eeeccC---cceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcc
Q 004581 276 VRAHTH---DVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHE 352 (744)
Q Consensus 276 ~~~h~~---~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~ 352 (744)
...+.. ...+++.. | .+...+++++.|..+++||.+.........
T Consensus 274 r~~~~~~~v~L~~Ia~~---------P-----------------------~nt~~faVgG~dqf~RvYD~R~~~~e~~n~ 321 (559)
T KOG1334|consen 274 READEKERVGLYTIAVD---------P-----------------------RNTNEFAVGGSDQFARVYDQRRIDKEENNG 321 (559)
T ss_pred eccCCccceeeeeEecC---------C-----------------------CCccccccCChhhhhhhhcccchhhccccc
Confidence 222222 23344443 1 122389999999999999987644221110
Q ss_pred cCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC-C
Q 004581 353 ICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG-M 431 (744)
Q Consensus 353 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~ 431 (744)
.+.. | +...+.......|++++++.++ .
T Consensus 322 -----------~~~~--f--------------------------------------~p~hl~~d~~v~ITgl~Ysh~~sE 350 (559)
T KOG1334|consen 322 -----------VLDK--F--------------------------------------CPHHLVEDDPVNITGLVYSHDGSE 350 (559)
T ss_pred -----------hhhh--c--------------------------------------CCccccccCcccceeEEecCCccc
Confidence 0000 0 0011111334679999999666 5
Q ss_pred EEEEEcCCceEEEEeecCCCCCce-E----EeeeccCCcccc--cccEEEE-eeCCCEEEEEeCCCcEEEEEccCCceee
Q 004581 432 LFAYSDHVKPSLFELKKGKVGQGE-W----IINKRQLPRKLQ--FAHSMIF-SYDSSQLIIAGHDRRIYVVDVSSSELLH 503 (744)
Q Consensus 432 ~la~~~~~~v~l~~~~~~~~~~~~-~----~~~~~~~~~~~~--~v~~i~~-spd~~~l~~~~~dg~i~v~d~~~~~~~~ 503 (744)
+||+-.+-.|++|+-..+++.... . ...+....+|.. .|..+.| -|...|+++|+.-|.|.||+-.++++++
T Consensus 351 lLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~ 430 (559)
T KOG1334|consen 351 LLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIR 430 (559)
T ss_pred eeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHH
Confidence 566668888999966553331100 0 011122444543 4666655 6889999999999999999999999999
Q ss_pred eeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcc
Q 004581 504 TFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQR 553 (744)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~ 553 (744)
-+.+ -..-|+||.-+|--..||+.+.|..|+||--.+.+
T Consensus 431 ~Meg-----------Dr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 431 FMEG-----------DRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred Hhhc-----------ccceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence 9888 45589999999999999999999999999875443
No 186
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=2.8e-18 Score=179.21 Aligned_cols=194 Identities=21% Similarity=0.290 Sum_probs=156.2
Q ss_pred eEEEEecCCeEEEEEecC---CCceeEeecccCccCcEEEEEEecCCC-EEEEEeCCCeEEEEEccCCceEEEEEecCCC
Q 004581 99 RVALACDDGCVRIYRITD---SDELIYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKLGYEIYRITVGLGG 174 (744)
Q Consensus 99 ~la~~~~dg~i~iwd~~~---~~~~~~~~~~~~h~~~V~~~~~s~dg~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~ 174 (744)
.||.|++||.|.+||... +.....+.++..|.+.|..+.|++... +||+|+.||.|.|||+..-+......
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~----- 156 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG----- 156 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-----
Confidence 799999999999999874 555555688889999999999999776 99999999999999998755444332
Q ss_pred CCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcceEEEeecccc--ceeEEEEcCCC-CEEEeecCC---CeEE
Q 004581 175 LGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHKG--DVNALAAAPSH-NRVFSTGSD---GQVI 246 (744)
Q Consensus 175 ~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~-~~l~~~~~d---g~i~ 246 (744)
.......|.+++|+..- .|++++.+|.+.|||++..+.+-.+..|.+ .+..++|+|++ ..|++++.| -.|.
T Consensus 157 -~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pviq 235 (1049)
T KOG0307|consen 157 -SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQ 235 (1049)
T ss_pred -CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeE
Confidence 11366789999999766 689999999999999998888877766554 47789999987 456666654 4699
Q ss_pred EEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCc
Q 004581 247 LYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVP 326 (744)
Q Consensus 247 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 326 (744)
+||++.... .++.+++|...|.++.|+ ..+..
T Consensus 236 lWDlR~ass----------------P~k~~~~H~~GilslsWc--------------------------------~~D~~ 267 (1049)
T KOG0307|consen 236 LWDLRFASS----------------PLKILEGHQRGILSLSWC--------------------------------PQDPR 267 (1049)
T ss_pred eecccccCC----------------chhhhcccccceeeeccC--------------------------------CCCch
Confidence 999887542 356778999999999987 22334
Q ss_pred EEEEecCCCeEEEEecCccC
Q 004581 327 MLISAGDDTKLFAYCANEFT 346 (744)
Q Consensus 327 ~l~s~~~d~~i~~~~~~~~~ 346 (744)
+|++++.|+.|.+|+.++.+
T Consensus 268 lllSsgkD~~ii~wN~~tgE 287 (1049)
T KOG0307|consen 268 LLLSSGKDNRIICWNPNTGE 287 (1049)
T ss_pred hhhcccCCCCeeEecCCCce
Confidence 99999999999999998744
No 187
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=2.8e-17 Score=151.04 Aligned_cols=166 Identities=22% Similarity=0.297 Sum_probs=140.7
Q ss_pred EeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCCeE
Q 004581 30 VLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCV 109 (744)
Q Consensus 30 ~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i 109 (744)
.+.||.++|-.++|+|-.. ..||+|++|.+|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD-------------------------------------------------~vIASgSeD~~v 106 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFND-------------------------------------------------CVIASGSEDTKV 106 (472)
T ss_pred CccCccccccccccCccCC-------------------------------------------------ceeecCCCCceE
Confidence 4678999999999999774 589999999999
Q ss_pred EEEEecCCCc----eeEeecccCccCcEEEEEEecCC-CEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEE
Q 004581 110 RIYRITDSDE----LIYHRSLPRVSGRVLSVTWSADG-NMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIW 184 (744)
Q Consensus 110 ~iwd~~~~~~----~~~~~~~~~h~~~V~~~~~s~dg-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 184 (744)
.||.+..+.. ..+...|.+|..+|-.++|+|.. +.|++++.|.+|.+||+.+|+.+..+. |...|+
T Consensus 107 ~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~---------hpd~i~ 177 (472)
T KOG0303|consen 107 MVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD---------HPDMVY 177 (472)
T ss_pred EEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC---------CCCeEE
Confidence 9999974432 23347888999999999999964 578999999999999999999988874 999999
Q ss_pred EEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccc-eeEEEEcCCCCEEEeec----CCCeEEEEEcccCc
Q 004581 185 SLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGD-VNALAAAPSHNRVFSTG----SDGQVILYKASCES 254 (744)
Q Consensus 185 ~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~-v~~l~~~~~~~~l~~~~----~dg~i~iw~~~~~~ 254 (744)
++.|+.|| +|++.+.|..|+|||.++++.+..-.+|.+. -..+.|..+|. +++.| .+..+.+||...-.
T Consensus 178 S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~ 252 (472)
T KOG0303|consen 178 SMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLE 252 (472)
T ss_pred EEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCccccc
Confidence 99999999 9999999999999999999999888788653 45567888888 55443 37889999987644
No 188
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.76 E-value=3.6e-18 Score=171.39 Aligned_cols=279 Identities=16% Similarity=0.236 Sum_probs=209.5
Q ss_pred CCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCC
Q 004581 178 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 256 (744)
Q Consensus 178 ~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 256 (744)
+|...|+|+.|...| ++++|+.|..++||..+++.++.++.+|.+.|+.++.+.++.++++++.|..|++|.+..+.
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~-- 265 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA-- 265 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc--
Confidence 799999999999999 89999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCe
Q 004581 257 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK 336 (744)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~ 336 (744)
++..+++|++.|++++|+ -..+.+.||+
T Consensus 266 ---------------pvsvLrghtgavtaiafs-------------------------------------P~~sss~dgt 293 (1113)
T KOG0644|consen 266 ---------------PVSVLRGHTGAVTAIAFS-------------------------------------PRASSSDDGT 293 (1113)
T ss_pred ---------------hHHHHhccccceeeeccC-------------------------------------ccccCCCCCc
Confidence 377889999999999997 2447788999
Q ss_pred EEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEec
Q 004581 337 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK 416 (744)
Q Consensus 337 i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (744)
+++||.+- ......+.|... +
T Consensus 294 ~~~wd~r~----~~~~y~prp~~~------------~------------------------------------------- 314 (1113)
T KOG0644|consen 294 CRIWDARL----EPRIYVPRPLKF------------T------------------------------------------- 314 (1113)
T ss_pred eEeccccc----cccccCCCCCCc------------c-------------------------------------------
Confidence 99999981 111111111100 0
Q ss_pred CCCCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCC-CEEEEEeCCCcEEEE
Q 004581 417 ASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS-SQLIIAGHDRRIYVV 494 (744)
Q Consensus 417 ~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~-~~l~~~~~dg~i~v~ 494 (744)
....+.++.|-.++.-++++ .++..+.|.+.. ..| +...+.-+.++.|. .+.+++-.+-.+.+|
T Consensus 315 ~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~-----l~~---------~~~~lif~t~ssd~~~~~~~ar~~~~~~vw 380 (1113)
T KOG0644|consen 315 EKDLVDSILFENNGDRFLTGSRDGEARNHEFEQ-----LAW---------RSNLLIFVTRSSDLSSIVVTARNDHRLCVW 380 (1113)
T ss_pred cccceeeeeccccccccccccCCcccccchhhH-----hhh---------hccceEEEeccccccccceeeeeeeEeeee
Confidence 01223334444555555553 555555554432 111 00011112222222 456667778889999
Q ss_pred EccCCceeeeeccCcccccccCCCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecC
Q 004581 495 DVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ-WLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPP 573 (744)
Q Consensus 495 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp 573 (744)
++.+|++.+.+.+ |...+..+.++|-.. ...+++.||...|||+-.+.+.......| ..+...+||+
T Consensus 381 nl~~g~l~H~l~g-----------hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSq 448 (1113)
T KOG0644|consen 381 NLYTGQLLHNLMG-----------HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQ 448 (1113)
T ss_pred ecccchhhhhhcc-----------cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCC
Confidence 9999999999998 899999999999555 44578899999999998887766555545 4677779999
Q ss_pred CCCCeEEEEecCCeEEEEEcCCC
Q 004581 574 QNNNVLIITTSSNQVYVFDVEAK 596 (744)
Q Consensus 574 ~~~~~l~~~~~d~~v~vwd~~~~ 596 (744)
||..++....-|.++|.....+
T Consensus 449 -dgts~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 449 -DGTSIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred -CCceEecCCCCCceEEeccCCC
Confidence 9999998888889999876544
No 189
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.76 E-value=5.8e-15 Score=153.17 Aligned_cols=191 Identities=16% Similarity=0.184 Sum_probs=157.7
Q ss_pred CCCCCeeEEecCCCeEEEEEccCCceeEEeeccCcce-eE---EeeccCCCccccccccccccCCccccCCCCCCCCCcC
Q 004581 2 GLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSI-WQ---MAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHET 77 (744)
Q Consensus 2 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i-~~---v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (744)
+..+.+++.++.++.+.+||...+.....+.+..... .+ +.++++.
T Consensus 96 ~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~------------------------------ 145 (967)
T KOG0974|consen 96 FEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEE------------------------------ 145 (967)
T ss_pred hhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcE------------------------------
Confidence 4567789999999999999999888777666433221 12 2233333
Q ss_pred ccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 004581 78 SESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSW 157 (744)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vw 157 (744)
-++++|+.-+.|.+|+....... ..+.+|++.|.++.|+-||.++++.|.|.++|+|
T Consensus 146 --------------------~~i~~gsv~~~iivW~~~~dn~p---~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW 202 (967)
T KOG0974|consen 146 --------------------LYIASGSVFGEIIVWKPHEDNKP---IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLW 202 (967)
T ss_pred --------------------EEEEeccccccEEEEeccccCCc---ceecccCCceEEEEEccCCcEEEEEecCcceeee
Confidence 38999999999999999733332 3688999999999999999999999999999999
Q ss_pred EccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeecccc-ceeEEEEcCCCCEE
Q 004581 158 DAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKG-DVNALAAAPSHNRV 236 (744)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l 236 (744)
++++++.....- -+|...||.+.|.|+ ++++++.|-+.++|+.+ ++.+..+.+|.. .|..++..++...+
T Consensus 203 ~i~s~~~~~~~~-------fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~ 273 (967)
T KOG0974|consen 203 PIDSREVLGCTG-------FGHSARVWACCFLPN-RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIK 273 (967)
T ss_pred ecccccccCccc-------ccccceeEEEEeccc-eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEE
Confidence 999988776211 279999999999999 99999999999999776 777778888864 68999999999999
Q ss_pred EeecCCCeEEEEEcccCc
Q 004581 237 FSTGSDGQVILYKASCES 254 (744)
Q Consensus 237 ~~~~~dg~i~iw~~~~~~ 254 (744)
++++.|+.+++|++....
T Consensus 274 vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 274 VTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred EeeccCcchhhhhhhccc
Confidence 999999999999988754
No 190
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.76 E-value=1.9e-18 Score=173.24 Aligned_cols=285 Identities=15% Similarity=0.181 Sum_probs=204.2
Q ss_pred eecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCC
Q 004581 123 HRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTG 201 (744)
Q Consensus 123 ~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg 201 (744)
.+.+.+|...|.|+.|...|.++++|+.|..++||..+++.++..+. +|.+.|+.++.+.++ .+++++.|.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r--------Ghs~ditdlavs~~n~~iaaaS~D~ 254 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR--------GHSGDITDLAVSSNNTMIAAASNDK 254 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCC--------CCccccchhccchhhhhhhhcccCc
Confidence 36778999999999999999999999999999999999999999998 899999999999988 889999999
Q ss_pred CEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeecc-
Q 004581 202 SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHT- 280 (744)
Q Consensus 202 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~- 280 (744)
.|++|-+.++.++..+.+|++.|++++|+|-. +.+.||++++||.+-.... .. ...+....
T Consensus 255 vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~------y~--------prp~~~~~~ 316 (1113)
T KOG0644|consen 255 VIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRI------YV--------PRPLKFTEK 316 (1113)
T ss_pred eEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccc------cC--------CCCCCcccc
Confidence 99999999999999999999999999999954 6788999999998822100 00 00000111
Q ss_pred CcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCC
Q 004581 281 HDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRV 360 (744)
Q Consensus 281 ~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~ 360 (744)
..+.++.+. ..+..+++++.|+.-..|.+..
T Consensus 317 ~~~~s~~~~---------------------------------~~~~~f~Tgs~d~ea~n~e~~~---------------- 347 (1113)
T KOG0644|consen 317 DLVDSILFE---------------------------------NNGDRFLTGSRDGEARNHEFEQ---------------- 347 (1113)
T ss_pred cceeeeecc---------------------------------ccccccccccCCcccccchhhH----------------
Confidence 112222221 1223677888887766665532
Q ss_pred ccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC-CEEEEE-cC
Q 004581 361 PIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG-MLFAYS-DH 438 (744)
Q Consensus 361 ~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~la~~-~~ 438 (744)
+++......+++... +- .+.+++ .+
T Consensus 348 -------l~~~~~~lif~t~ss----------------------------------------------d~~~~~~~ar~~ 374 (1113)
T KOG0644|consen 348 -------LAWRSNLLIFVTRSS----------------------------------------------DLSSIVVTARND 374 (1113)
T ss_pred -------hhhhccceEEEeccc----------------------------------------------cccccceeeeee
Confidence 111111112221111 11 122222 34
Q ss_pred CceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEE-EEEeCCCcEEEEEccCCceeeeeccCcccccccCC
Q 004581 439 VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQL-IIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQ 517 (744)
Q Consensus 439 ~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 517 (744)
-.+.+|++.. +..+ ..+.+|...+..+.++|-+.++ .+++.||...|||+-.|.+++.+..
T Consensus 375 ~~~~vwnl~~---g~l~-----H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~---------- 436 (1113)
T KOG0644|consen 375 HRLCVWNLYT---GQLL-----HNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI---------- 436 (1113)
T ss_pred eEeeeeeccc---chhh-----hhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec----------
Confidence 4445566543 2111 4456777789999999966655 5678899999999988887766553
Q ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcce
Q 004581 518 PSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ 554 (744)
Q Consensus 518 ~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~ 554 (744)
....+..-+||+||..++..+.-|.++|.....++.
T Consensus 437 -gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 437 -GHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred -ccceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 355677779999999999999999999988765544
No 191
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.75 E-value=8.3e-17 Score=148.01 Aligned_cols=188 Identities=19% Similarity=0.261 Sum_probs=151.7
Q ss_pred CCeeEEecCCCeEEEEEccCC-------ceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcC
Q 004581 5 GGRLFSSSIDGSVSEWDLYDL-------KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHET 77 (744)
Q Consensus 5 ~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (744)
+..+|+|+.|.+|.||.+..+ +++..|.+|...|.-|+|+|...
T Consensus 94 D~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~----------------------------- 144 (472)
T KOG0303|consen 94 DCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP----------------------------- 144 (472)
T ss_pred CceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch-----------------------------
Confidence 556999999999999998753 45678999999999999999874
Q ss_pred ccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 004581 78 SESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSW 157 (744)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vw 157 (744)
+.|++++.|++|.|||+.+++.+ .++. |..-|.++.|+.||.+|+|.+.|..||||
T Consensus 145 --------------------NVLlsag~Dn~v~iWnv~tgeal---i~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~ 200 (472)
T KOG0303|consen 145 --------------------NVLLSAGSDNTVSIWNVGTGEAL---ITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVI 200 (472)
T ss_pred --------------------hhHhhccCCceEEEEeccCCcee---eecC-CCCeEEEEEeccCCceeeeecccceeEEE
Confidence 57999999999999999999887 4555 99999999999999999999999999999
Q ss_pred EccCCceEEEEEecCCCCCCCCc-eeEEEEEEecCCeEEEEc----CCCCEEEEeCCC---cceEEEeeccccceeEEEE
Q 004581 158 DAKLGYEIYRITVGLGGLGSGPE-LCIWSLLSLRCGTLVSAD----STGSVQFWDSRH---GTLLQAHSFHKGDVNALAA 229 (744)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~l~s~~----~dg~i~vwd~~~---~~~~~~~~~h~~~v~~l~~ 229 (744)
|.++|+.+..-. .|. ..-..+.|..++.+++.+ ++..+-+||... .-..+.+.. .+.|.---|
T Consensus 201 dpr~~~~v~e~~--------~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFy 271 (472)
T KOG0303|consen 201 DPRRGTVVSEGV--------AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFY 271 (472)
T ss_pred cCCCCcEeeecc--------cccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEecc-CCceEEeee
Confidence 999999988774 232 233445677788666554 467899998765 323455554 456666678
Q ss_pred cCCCCEEEeec-CCCeEEEEEcccCc
Q 004581 230 APSHNRVFSTG-SDGQVILYKASCES 254 (744)
Q Consensus 230 ~~~~~~l~~~~-~dg~i~iw~~~~~~ 254 (744)
.+|.+.++.+| .|+.|+-|.+....
T Consensus 272 D~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 272 DPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cCCCCEEEEEecCCcceEEEEecCCC
Confidence 88888887655 49999999988765
No 192
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=2.9e-16 Score=162.00 Aligned_cols=303 Identities=14% Similarity=0.160 Sum_probs=195.5
Q ss_pred cEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC---eEEEEcCCCCEEEEeC
Q 004581 132 RVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG---TLVSADSTGSVQFWDS 208 (744)
Q Consensus 132 ~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~s~~~dg~i~vwd~ 208 (744)
+-..+.|+|-...++++...-.|+|||.+.++....+..+. .....|..+.+..+. .+++++.||.|+||+-
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~-----~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA-----FPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCC-----CCCCccceeeeecccchhheeeeccCceEEEecc
Confidence 45668899988999999877799999999999988887432 345678888887644 7899999999999964
Q ss_pred CCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeee
Q 004581 209 RHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTV 288 (744)
Q Consensus 209 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 288 (744)
-.... ....-| -+|++=...+.++..-|.+.-|.-.+
T Consensus 1141 y~~~~-----~~~eLV--Taw~~Ls~~~~~~r~~~~v~dWqQ~~------------------------------------ 1177 (1387)
T KOG1517|consen 1141 YADKW-----KKPELV--TAWSSLSDQLPGARGTGLVVDWQQQS------------------------------------ 1177 (1387)
T ss_pred ccccc-----CCceeE--EeeccccccCccCCCCCeeeehhhhC------------------------------------
Confidence 31110 000001 12222112222222223233332111
Q ss_pred eccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccce
Q 004581 289 AVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNT 368 (744)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 368 (744)
..|+++|.-..|++||........
T Consensus 1178 -------------------------------------G~Ll~tGd~r~IRIWDa~~E~~~~------------------- 1201 (1387)
T KOG1517|consen 1178 -------------------------------------GHLLVTGDVRSIRIWDAHKEQVVA------------------- 1201 (1387)
T ss_pred -------------------------------------CeEEecCCeeEEEEEecccceeEe-------------------
Confidence 145555557788899887533211
Q ss_pred eecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEc-CCCCEEEEE-cCCceEEEEe
Q 004581 369 IFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTIS-NSGMLFAYS-DHVKPSLFEL 446 (744)
Q Consensus 369 ~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~la~~-~~~~v~l~~~ 446 (744)
.+..+....++++.-+ ..|..+++| .||.+++||.
T Consensus 1202 -------------------------------------------diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~ 1238 (1387)
T KOG1517|consen 1202 -------------------------------------------DIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDR 1238 (1387)
T ss_pred -------------------------------------------ecccCCCccceeecccccCCceEEEeecCCceEEeec
Confidence 1111112333433322 246788887 9999999999
Q ss_pred ecCCC--CCceEEeeeccCCcccc--cccEEEEeeCCCE-EEEEeCCCcEEEEEccCCceeeee--ccCcccccccCCCC
Q 004581 447 KKGKV--GQGEWIINKRQLPRKLQ--FAHSMIFSYDSSQ-LIIAGHDRRIYVVDVSSSELLHTF--TPCREEHDREIQPS 519 (744)
Q Consensus 447 ~~~~~--~~~~~~~~~~~~~~~~~--~v~~i~~spd~~~-l~~~~~dg~i~v~d~~~~~~~~~~--~~~~~~~~~~~~~~ 519 (744)
+.... .+..| ..|.. +|..+.+-+.|-. |++|+.+|.|++||+........+ ..+.+ .
T Consensus 1239 R~a~~ds~v~~~-------R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~--------y 1303 (1387)
T KOG1517|consen 1239 RMAPPDSLVCVY-------REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE--------Y 1303 (1387)
T ss_pred ccCCccccceee-------cccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc--------c
Confidence 86333 22222 22332 4888999886655 999999999999999753222222 22111 2
Q ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEE-----ecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcC
Q 004581 520 EPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFI-----SRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVE 594 (744)
Q Consensus 520 ~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~ 594 (744)
.+..+++..+++...+|+|+. +.|.||++...+.-... .+...+.+.+++|+| -.-+||+|+.|..|.||..+
T Consensus 1304 Gs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1304 GSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred CccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecC
Confidence 346999999999999999998 99999999866532221 111226789999999 87889999999999999988
Q ss_pred CCcc
Q 004581 595 AKQL 598 (744)
Q Consensus 595 ~~~~ 598 (744)
..++
T Consensus 1382 k~~~ 1385 (1387)
T KOG1517|consen 1382 KPRL 1385 (1387)
T ss_pred CcCC
Confidence 7753
No 193
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.8e-16 Score=145.48 Aligned_cols=310 Identities=13% Similarity=0.071 Sum_probs=202.0
Q ss_pred eecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCC
Q 004581 123 HRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTG 201 (744)
Q Consensus 123 ~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg 201 (744)
.+.+.+|.+.|.++.||.++++||+|+.|..+++|+++..- ..+...+.+-....|...|.|++|...+ .+++|..++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~-~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELM-VRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHH-hhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 36677999999999999999999999999999999985421 1111112222223677999999999877 899999999
Q ss_pred CEEEEeCCCcceEEEeec--cccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeec
Q 004581 202 SVQFWDSRHGTLLQAHSF--HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAH 279 (744)
Q Consensus 202 ~i~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 279 (744)
+|..-|+++.+.+..+.. ..+.|..+..+|..+.|++.+.++.|.+||.+....... ...+...
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~--------------~~~~AN~ 193 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPIS--------------LVLPANS 193 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCc--------------eeeecCC
Confidence 999999999888876653 345899999999999999999999999999987542100 0111111
Q ss_pred cCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCC
Q 004581 280 THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQR 359 (744)
Q Consensus 280 ~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~ 359 (744)
.....++.|. +....+|++.+..+-+-+||.+................
T Consensus 194 ~~~F~t~~F~--------------------------------P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~ 241 (609)
T KOG4227|consen 194 GKNFYTAEFH--------------------------------PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLP 241 (609)
T ss_pred Cccceeeeec--------------------------------CCCceeEEeccccCCCCceeeccccchHHhhhccccCc
Confidence 2222333343 12224788888889999999986432211110000000
Q ss_pred CccccccceeecCCeEEEEEeC-C-eEEEEEeeccCCcccCCCCCCCCCcceEEEEEecC-------CCCeEEEEEcCCC
Q 004581 360 VPIHLVHNTIFSHTSLLLVQYS-C-RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKA-------SRKIICSTISNSG 430 (744)
Q Consensus 360 ~~~~~v~~~~~s~~~~~l~~~~-~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~s~~g 430 (744)
.....-.++.|+|+|..+.+-. + .-.+|++-... +..++..| ...+.+++|..|-
T Consensus 242 ~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R----------------~~V~k~D~N~~GY~N~~T~KS~~F~~D~ 305 (609)
T KOG4227|consen 242 QENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR----------------CFVLKSDHNPNGYCNIKTIKSMTFIDDY 305 (609)
T ss_pred ccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc----------------ceeEeccCCCCcceeeeeeeeeeeecce
Confidence 0011224678889887655432 2 33344444322 11122221 1235567777665
Q ss_pred CEEEE-EcCCceEEEEeecCCCCCc---------------eEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEE
Q 004581 431 MLFAY-SDHVKPSLFELKKGKVGQG---------------EWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVV 494 (744)
Q Consensus 431 ~~la~-~~~~~v~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~ 494 (744)
. +++ +.+-.+++|.+.......- +.+-.-..+.+|..-++.+.|+|....|++.+-...++||
T Consensus 306 ~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlW 384 (609)
T KOG4227|consen 306 T-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLW 384 (609)
T ss_pred e-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecc
Confidence 5 566 4777899999864211100 1111113466788889999999999999999999999999
Q ss_pred Ec
Q 004581 495 DV 496 (744)
Q Consensus 495 d~ 496 (744)
.-
T Consensus 385 S~ 386 (609)
T KOG4227|consen 385 SD 386 (609)
T ss_pred cc
Confidence 75
No 194
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.75 E-value=1.4e-15 Score=139.92 Aligned_cols=289 Identities=13% Similarity=0.175 Sum_probs=201.3
Q ss_pred CCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE----cCCceEEEEeecCCCCCceE
Q 004581 381 SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS----DHVKPSLFELKKGKVGQGEW 456 (744)
Q Consensus 381 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~----~~~~v~l~~~~~~~~~~~~~ 456 (744)
+..|.+|++....+.. -..........++-++++|+++.|.++ ..+.+-.|.++..++...+
T Consensus 15 s~gI~v~~ld~~~g~l-------------~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~- 80 (346)
T COG2706 15 SQGIYVFNLDTKTGEL-------------SLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTF- 80 (346)
T ss_pred CCceEEEEEeCccccc-------------chhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEE-
Confidence 3578889998666441 111112334778889999999887773 4788999999874455444
Q ss_pred EeeeccCCcccccccEEEEeeCCCEEEEEeC-CCcEEEEEccC-Cceeee---eccCc-ccccccCCCCCCceEEEEECC
Q 004581 457 IINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DRRIYVVDVSS-SELLHT---FTPCR-EEHDREIQPSEPPITKMFTSS 530 (744)
Q Consensus 457 ~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~-dg~i~v~d~~~-~~~~~~---~~~~~-~~~~~~~~~~~~~i~~l~~sp 530 (744)
+....+.+. +.+.++++++|++|+++.. .|.|.++.++. |.+... +.... ...+++..+| +....+.|
T Consensus 81 -ln~~~~~g~--~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h---~H~a~~tP 154 (346)
T COG2706 81 -LNRQTLPGS--PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPH---VHSANFTP 154 (346)
T ss_pred -eeccccCCC--CCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCc---cceeeeCC
Confidence 333334433 4589999999999999977 58999999954 543322 22100 0011222222 77889999
Q ss_pred CCCEEEEEeC-CCcEEEEECCCcceEEEE--ecCCCCceeEEeecCCCCCeEEEEec-CCeEEEEEcCC--Ccccccccc
Q 004581 531 DGQWLAAVNC-FGDVYIFNLEIQRQHWFI--SRLEGASVTAAGFPPQNNNVLIITTS-SNQVYVFDVEA--KQLGEWSMQ 604 (744)
Q Consensus 531 dg~~las~~~-dg~i~iwd~~~~~~~~~~--~~~~~~~v~~l~~sp~~~~~l~~~~~-d~~v~vwd~~~--~~~~~ws~~ 604 (744)
++++|++.+. -..|.+|+++.+.+...- ....+..+++|+|+| ++++..+.++ +++|.+|..+. +++.. .+
T Consensus 155 ~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~--lQ 231 (346)
T COG2706 155 DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEE--LQ 231 (346)
T ss_pred CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEE--ee
Confidence 9999999874 346999999977653221 112457899999999 9999888776 67999999987 66544 45
Q ss_pred ccCCcccccccCCCceEEEEeCCCCCCcEEEEE----cCceEEEEeCCCCCCCCccCcccCCCchhhhhhccCCcccccc
Q 004581 605 HTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIY----SARAMCVIDFGRPVDPDDETDMVSGQGSALRKIASTPINGRLK 680 (744)
Q Consensus 605 ~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (744)
....+|..|.+. .+..+|..+|||+ -+++. ++.+++.+|... ..|+.++..++.+..|
T Consensus 232 ~i~tlP~dF~g~-~~~aaIhis~dGr--FLYasNRg~dsI~~f~V~~~~---------------g~L~~~~~~~teg~~P 293 (346)
T COG2706 232 TIDTLPEDFTGT-NWAAAIHISPDGR--FLYASNRGHDSIAVFSVDPDG---------------GKLELVGITPTEGQFP 293 (346)
T ss_pred eeccCccccCCC-CceeEEEECCCCC--EEEEecCCCCeEEEEEEcCCC---------------CEEEEEEEeccCCcCC
Confidence 556788888754 6788999999975 33332 334556666421 1155666777888888
Q ss_pred ccccccccccccccCCcceEEEecccceEEeeecCCCeEEEEecChH
Q 004581 681 RKLRDCQTESNKLHGRKNFEFFAFRDPVLFIGHLSKSSMLIIDKPWL 727 (744)
Q Consensus 681 r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~vve~p~~ 727 (744)
| .|. +.+.+.+|.++.+++|.+.|++|-..
T Consensus 294 R----------------~F~-i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 294 R----------------DFN-INPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred c----------------cce-eCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 8 788 89999999999999999999999774
No 195
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.74 E-value=1.1e-15 Score=146.16 Aligned_cols=174 Identities=15% Similarity=0.173 Sum_probs=145.8
Q ss_pred CeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCC
Q 004581 6 GRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD 85 (744)
Q Consensus 6 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (744)
+.++.++.||.+.+.+ +.++..+.+..|.+.|.|-.|+|||
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dG-------------------------------------- 116 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDG-------------------------------------- 116 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCC--------------------------------------
Confidence 3488889999999998 6788999999999999999999999
Q ss_pred cccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceE
Q 004581 86 SDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 165 (744)
Q Consensus 86 ~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~ 165 (744)
.-|+++++||.|++|.-. +.+. .++.....+|.|++|.|+.+.++.+.. +.+.|=.+.-...+
T Consensus 117 ------------tgLlt~GEDG~iKiWSrs--GMLR--Stl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~ 179 (737)
T KOG1524|consen 117 ------------AGLLTAGEDGVIKIWSRS--GMLR--STVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAANSKI 179 (737)
T ss_pred ------------ceeeeecCCceEEEEecc--chHH--HHHhhcCceeEEEEECCCCCceEEecC-CeEEEeecccccce
Confidence 578999999999999974 3332 556667789999999999987776654 47777777777777
Q ss_pred EEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCe
Q 004581 166 YRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQ 244 (744)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~ 244 (744)
-+.+ .|.+.|.++.|++.+ .+++|++|-..++||.. |+.+..-..|..+|++++|+|+ ..++.++. ++
T Consensus 180 i~Wk--------AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt 248 (737)
T KOG1524|consen 180 IRWR--------AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NT 248 (737)
T ss_pred eEEe--------ccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeee-ee
Confidence 7777 799999999999988 89999999999999987 8888888899999999999999 55555543 34
Q ss_pred EE
Q 004581 245 VI 246 (744)
Q Consensus 245 i~ 246 (744)
++
T Consensus 249 ~R 250 (737)
T KOG1524|consen 249 AR 250 (737)
T ss_pred ee
Confidence 44
No 196
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.74 E-value=1.5e-14 Score=145.39 Aligned_cols=187 Identities=15% Similarity=0.182 Sum_probs=126.7
Q ss_pred eEEecCCCeEEEEEccC-Cc--eeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCC
Q 004581 8 LFSSSIDGSVSEWDLYD-LK--QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS 84 (744)
Q Consensus 8 l~~~~~d~~i~iwd~~~-~~--~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (744)
+++...++.|.+||+.+ ++ .+.++. +.+....++++|+++
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~------------------------------------ 47 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKR------------------------------------ 47 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCC------------------------------------
Confidence 34447799999999964 43 445554 356788899999994
Q ss_pred CcccccccccccCCeEEEE-ecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeC-CCeEEEEEccC-
Q 004581 85 DSDELHEQSVVEDRRVALA-CDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-DGYIRSWDAKL- 161 (744)
Q Consensus 85 ~~~~~~~~~~~~~~~la~~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~-dg~i~vwd~~~- 161 (744)
+|+++ ..++.|.+|++.....+....... ..+....++|+|+|++|++++. ++.|.+|++++
T Consensus 48 --------------~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 48 --------------HLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred --------------EEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence 55544 458899999997333343223222 2335678999999999988875 78999999964
Q ss_pred CceEEEEEecCCCCCCCCceeEEEEEEecCC-eE-EEEcCCCCEEEEeCCCcceEEE-----eec-cccceeEEEEcCCC
Q 004581 162 GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TL-VSADSTGSVQFWDSRHGTLLQA-----HSF-HKGDVNALAAAPSH 233 (744)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~s~~~dg~i~vwd~~~~~~~~~-----~~~-h~~~v~~l~~~~~~ 233 (744)
+......... ........++++|++ ++ ++...++.|.+||+.+...+.. ... .......++|+|+|
T Consensus 113 g~~~~~~~~~------~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg 186 (330)
T PRK11028 113 GIPVAPIQII------EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQ 186 (330)
T ss_pred CCCCCceeec------cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCC
Confidence 3221111100 122345667899998 54 5566679999999976332211 111 12345789999999
Q ss_pred CEEEeecC-CCeEEEEEccc
Q 004581 234 NRVFSTGS-DGQVILYKASC 252 (744)
Q Consensus 234 ~~l~~~~~-dg~i~iw~~~~ 252 (744)
++++++.. ++.|.+|++..
T Consensus 187 ~~lyv~~~~~~~v~v~~~~~ 206 (330)
T PRK11028 187 QYAYCVNELNSSVDVWQLKD 206 (330)
T ss_pred CEEEEEecCCCEEEEEEEeC
Confidence 99988876 89999999974
No 197
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.6e-15 Score=141.57 Aligned_cols=202 Identities=17% Similarity=0.177 Sum_probs=148.0
Q ss_pred eEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCccccc
Q 004581 225 NALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVK 304 (744)
Q Consensus 225 ~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~ 304 (744)
.+++|+.+|..+++++.||.+|+|+...... +.....|...|.++.|+ ||++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t-----------------~l~e~~~~~eV~DL~FS---------~dgk-- 199 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT-----------------ILEEIAHHAEVKDLDFS---------PDGK-- 199 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh-----------------hhhhHhhcCccccceeC---------CCCc--
Confidence 6899999999999999999999999776552 44557899999999998 8887
Q ss_pred ccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeE
Q 004581 305 RSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRL 384 (744)
Q Consensus 305 ~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i 384 (744)
.|++-+.| ..++|+..+.........
T Consensus 200 ----------------------~lasig~d-~~~VW~~~~g~~~a~~t~------------------------------- 225 (398)
T KOG0771|consen 200 ----------------------FLASIGAD-SARVWSVNTGAALARKTP------------------------------- 225 (398)
T ss_pred ----------------------EEEEecCC-ceEEEEeccCchhhhcCC-------------------------------
Confidence 99999999 999999987532211110
Q ss_pred EEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC---C-EEEE--EcCCceEEEEeecCCCCCceEEe
Q 004581 385 DILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG---M-LFAY--SDHVKPSLFELKKGKVGQGEWII 458 (744)
Q Consensus 385 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g---~-~la~--~~~~~v~l~~~~~~~~~~~~~~~ 458 (744)
.........+.|+.|+ . ++++ ...+.++.|++...... .+ +
T Consensus 226 ------------------------------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~--l 272 (398)
T KOG0771|consen 226 ------------------------------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NF--L 272 (398)
T ss_pred ------------------------------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cc--c
Confidence 0011223333444444 1 2233 24556666666542222 21 1
Q ss_pred eeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEE
Q 004581 459 NKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV 538 (744)
Q Consensus 459 ~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~ 538 (744)
+..+.......+++++.|+||+++|.|+.||.|.|++..+.+.++.++.. |...|+.+.|+||.+++++.
T Consensus 273 ~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~a----------H~~~VT~ltF~Pdsr~~~sv 342 (398)
T KOG0771|consen 273 RLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEA----------HLGFVTGLTFSPDSRYLASV 342 (398)
T ss_pred chhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhh----------heeeeeeEEEcCCcCccccc
Confidence 22233334458999999999999999999999999999988888777653 99999999999999999999
Q ss_pred eCCCcEEEEECCC
Q 004581 539 NCFGDVYIFNLEI 551 (744)
Q Consensus 539 ~~dg~i~iwd~~~ 551 (744)
+.+....|..+.-
T Consensus 343 Ss~~~~~v~~l~v 355 (398)
T KOG0771|consen 343 SSDNEAAVTKLAV 355 (398)
T ss_pred ccCCceeEEEEee
Confidence 9999888887754
No 198
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.72 E-value=2.3e-15 Score=133.02 Aligned_cols=278 Identities=17% Similarity=0.243 Sum_probs=188.0
Q ss_pred CCeeEEecC----CCeEEEEEc--cCCceeEEe-eccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcC
Q 004581 5 GGRLFSSSI----DGSVSEWDL--YDLKQKIVL-QSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHET 77 (744)
Q Consensus 5 ~~~l~~~~~----d~~i~iwd~--~~~~~~~~~-~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (744)
+.|||.|+. .+.|.|-.+ .+++.+..- -.|..+++.+.|.|+.+-...
T Consensus 59 ~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~p------------------------- 113 (364)
T KOG0290|consen 59 KFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYP------------------------- 113 (364)
T ss_pred ceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCc-------------------------
Confidence 456888863 456665544 344444321 138899999999998842211
Q ss_pred ccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCC-ceeEeecc-----cCccCcEEEEEEec-CCCEEEEEeC
Q 004581 78 SESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSD-ELIYHRSL-----PRVSGRVLSVTWSA-DGNMLYSGSS 150 (744)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~-~~~~~~~~-----~~h~~~V~~~~~s~-dg~~l~t~~~ 150 (744)
++||+.++ .+|+|.+...+ .+.....+ ..+..++++..|+. |-+++.+++-
T Consensus 114 --------------------dlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 114 --------------------DLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred --------------------chhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 36776654 89999997322 22222222 24567899999986 5568889999
Q ss_pred CCeEEEEEccCCce---EEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcceE---EEeecccc
Q 004581 151 DGYIRSWDAKLGYE---IYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLL---QAHSFHKG 222 (744)
Q Consensus 151 dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~---~~~~~h~~ 222 (744)
|-+..|||+++|.. ...+- .|...|+.++|..++ .+++.+.||.+|++|++.-+.- ..-.....
T Consensus 172 DTTCTiWdie~~~~~~vkTQLI--------AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~ 243 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLI--------AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPST 243 (364)
T ss_pred cCeEEEEEEeeccccceeeEEE--------ecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCC
Confidence 99999999999733 23333 699999999999977 7999999999999999874433 22223346
Q ss_pred ceeEEEEcCCC-CEEEeecC-CCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCc
Q 004581 223 DVNALAAAPSH-NRVFSTGS-DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE 300 (744)
Q Consensus 223 ~v~~l~~~~~~-~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~ 300 (744)
+...++|++.. +++++-.. ...|.+.|++.... .+..+++|...|.+++|. |.
T Consensus 244 pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t----------------pva~L~~H~a~VNgIaWa---------Ph 298 (364)
T KOG0290|consen 244 PLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT----------------PVARLRNHQASVNGIAWA---------PH 298 (364)
T ss_pred cceeeccCcCCchHHhhhhcCCceEEEEEecCCCc----------------ceehhhcCcccccceEec---------CC
Confidence 78899998854 66666444 45799999987653 477889999999999997 33
Q ss_pred ccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCC-eEEEEE
Q 004581 301 DKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHT-SLLLVQ 379 (744)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~ 379 (744)
. ...|.++|.|....+||+.......... +...-.....|+.+.|++. ...++.
T Consensus 299 S-----------------------~~hictaGDD~qaliWDl~q~~~~~~~d--Pilay~a~~EVNqi~Ws~~~~Dwiai 353 (364)
T KOG0290|consen 299 S-----------------------SSHICTAGDDCQALIWDLQQMPRENGED--PILAYTAGGEVNQIQWSSSQPDWIAI 353 (364)
T ss_pred C-----------------------CceeeecCCcceEEEEecccccccCCCC--chhhhhccceeeeeeecccCCCEEEE
Confidence 3 2489999999999999998754311111 1111113366778888752 333433
Q ss_pred -eCCeEEEE
Q 004581 380 -YSCRLDIL 387 (744)
Q Consensus 380 -~~~~i~i~ 387 (744)
.++.+++.
T Consensus 354 ~~~kkleiL 362 (364)
T KOG0290|consen 354 CFGKKLEIL 362 (364)
T ss_pred EecCeeeEE
Confidence 23344443
No 199
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.71 E-value=6.6e-15 Score=146.59 Aligned_cols=326 Identities=15% Similarity=0.128 Sum_probs=197.8
Q ss_pred eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEE
Q 004581 193 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIY 272 (744)
Q Consensus 193 ~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 272 (744)
.+++-..++.|.+.|..+.+.+..+....+.-..+.|+|||+++++++.||.|.++|+.+.+.
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~----------------- 70 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV----------------- 70 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE-----------------
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE-----------------
Confidence 345667789999999999999999987554445578999999999999999999999998772
Q ss_pred EeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEe-cCCCeEEEEecCccCCCCCc
Q 004581 273 VGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISA-GDDTKLFAYCANEFTKFSPH 351 (744)
Q Consensus 273 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~-~~d~~i~~~~~~~~~~~~~~ 351 (744)
+..+.. .....+++++ +||+ +++++ ..++.+.++|..+.+.....
T Consensus 71 v~~i~~-G~~~~~i~~s---------~DG~------------------------~~~v~n~~~~~v~v~D~~tle~v~~I 116 (369)
T PF02239_consen 71 VATIKV-GGNPRGIAVS---------PDGK------------------------YVYVANYEPGTVSVIDAETLEPVKTI 116 (369)
T ss_dssp EEEEE--SSEEEEEEE-----------TTT------------------------EEEEEEEETTEEEEEETTT--EEEEE
T ss_pred EEEEec-CCCcceEEEc---------CCCC------------------------EEEEEecCCCceeEeccccccceeec
Confidence 444433 3345778887 7776 66554 57889999999887655443
Q ss_pred ccCCCCCCCccccccceeecCCeE-EEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC
Q 004581 352 EICPAPQRVPIHLVHNTIFSHTSL-LLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG 430 (744)
Q Consensus 352 ~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 430 (744)
.....+.......+..+..+|.+. +++.-...-++|.++..... .+...............|+|++
T Consensus 117 ~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~-------------~~~~~~i~~g~~~~D~~~dpdg 183 (369)
T PF02239_consen 117 PTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK-------------NLKVTTIKVGRFPHDGGFDPDG 183 (369)
T ss_dssp E--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS-------------CEEEEEEE--TTEEEEEE-TTS
T ss_pred ccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc-------------ccceeeecccccccccccCccc
Confidence 322222222334555666677665 66666666677777654422 2222222334667889999999
Q ss_pred CEEEEE--cCCceEEEEeecCCCCCceEEeeeccCCcccc------cccEEEEe--eCCCEEEEEeCCCcEEEEEccCCc
Q 004581 431 MLFAYS--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQ------FAHSMIFS--YDSSQLIIAGHDRRIYVVDVSSSE 500 (744)
Q Consensus 431 ~~la~~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~i~~s--pd~~~l~~~~~dg~i~v~d~~~~~ 500 (744)
+++.++ .++.+-+++... ......+.....+.... +-....|. ..+...++.-....+.+||..+.+
T Consensus 184 ry~~va~~~sn~i~viD~~~---~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wk 260 (369)
T PF02239_consen 184 RYFLVAANGSNKIAVIDTKT---GKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWK 260 (369)
T ss_dssp SEEEEEEGGGTEEEEEETTT---TEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTS
T ss_pred ceeeecccccceeEEEeecc---ceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCe
Confidence 987663 666888888754 22333333322221111 11122232 233343333333457788988999
Q ss_pred eeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEE----eCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCC
Q 004581 501 LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV----NCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNN 576 (744)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~----~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~ 576 (744)
.++++.. .... ..+..+||++++.+. ...+.|.++|.++.+....+....+..+.++.|++ ||
T Consensus 261 vv~~I~~-----------~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~-dG 327 (369)
T PF02239_consen 261 VVKTIPT-----------QGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNP-DG 327 (369)
T ss_dssp EEEEEE------------SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-T-TS
T ss_pred EEEEEEC-----------CCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECC-CC
Confidence 9999987 3444 788899999999988 45579999999999776666543334599999999 99
Q ss_pred CeEEEEecCC--eEEEEEcCCCcc
Q 004581 577 NVLIITTSSN--QVYVFDVEAKQL 598 (744)
Q Consensus 577 ~~l~~~~~d~--~v~vwd~~~~~~ 598 (744)
+.+.++..++ .|.+||..+.++
T Consensus 328 ~~v~vS~~~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 328 KEVWVSVWDGNGAIVVYDAKTLKE 351 (369)
T ss_dssp SEEEEEEE--TTEEEEEETTTTEE
T ss_pred CEEEEEEecCCCEEEEEECCCcEE
Confidence 9877765543 799999999875
No 200
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.71 E-value=2.5e-15 Score=153.30 Aligned_cols=275 Identities=18% Similarity=0.176 Sum_probs=194.8
Q ss_pred CeEEEEEccCC-ceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccc
Q 004581 15 GSVSEWDLYDL-KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQS 93 (744)
Q Consensus 15 ~~i~iwd~~~~-~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (744)
+.+.+||+... .+...+. -...|.|++|+|...
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p--------------------------------------------- 255 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDP--------------------------------------------- 255 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCc---------------------------------------------
Confidence 48999999875 5555565 478999999999874
Q ss_pred cccCCeEEEEecCCeEEEEEecCCCc--ee-EeecccCccCcEEEEEEecCCCE--EEEEeCCCeEEEEEccCCceEEEE
Q 004581 94 VVEDRRVALACDDGCVRIYRITDSDE--LI-YHRSLPRVSGRVLSVTWSADGNM--LYSGSSDGYIRSWDAKLGYEIYRI 168 (744)
Q Consensus 94 ~~~~~~la~~~~dg~i~iwd~~~~~~--~~-~~~~~~~h~~~V~~~~~s~dg~~--l~t~~~dg~i~vwd~~~~~~~~~~ 168 (744)
.+||.|+.+|.|.+||+..+.. .. .......|..+|+.+.|-.+..- +++++.||.|..|+++.-......
T Consensus 256 ----~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~ 331 (555)
T KOG1587|consen 256 ----NLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEG 331 (555)
T ss_pred ----ceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhh
Confidence 5799999999999999985544 21 11233478999999999776554 999999999999987653331111
Q ss_pred -EecC---CCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCC---Cc-----ceEEEeeccccceeEEEEcCCCC
Q 004581 169 -TVGL---GGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSR---HG-----TLLQAHSFHKGDVNALAAAPSHN 234 (744)
Q Consensus 169 -~~~~---~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~---~~-----~~~~~~~~h~~~v~~l~~~~~~~ 234 (744)
.... ..........++++.|.+.. .++.|+.+|.|.-=+.. .+ +.+..+..|.++|.++.++|=+.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~ 411 (555)
T KOG1587|consen 332 LLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP 411 (555)
T ss_pred cccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcc
Confidence 1100 01111345678999999877 89999999998773322 21 22345667899999999999887
Q ss_pred EEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcc
Q 004581 235 RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPID 314 (744)
Q Consensus 235 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (744)
.++..+.|.++++|....... ++..+..+...|.+++|+ |.
T Consensus 412 k~fls~gDW~vriWs~~~~~~----------------Pl~~~~~~~~~v~~vaWS---------pt-------------- 452 (555)
T KOG1587|consen 412 KNFLSVGDWTVRIWSEDVIAS----------------PLLSLDSSPDYVTDVAWS---------PT-------------- 452 (555)
T ss_pred ceeeeeccceeEeccccCCCC----------------cchhhhhccceeeeeEEc---------Cc--------------
Confidence 676666699999998773221 244556677779999997 22
Q ss_pred ccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCC
Q 004581 315 FSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENN 394 (744)
Q Consensus 315 ~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~ 394 (744)
...+++++..||.|.+||+.....-.
T Consensus 453 ---------rpavF~~~d~~G~l~iWDLl~~~~~P--------------------------------------------- 478 (555)
T KOG1587|consen 453 ---------RPAVFATVDGDGNLDIWDLLQDDEEP--------------------------------------------- 478 (555)
T ss_pred ---------CceEEEEEcCCCceehhhhhccccCC---------------------------------------------
Confidence 22389999999999999997532111
Q ss_pred cccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeec
Q 004581 395 VESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKK 448 (744)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~ 448 (744)
+...... ......+.++++|++|++| ..|.+.+|++..
T Consensus 479 ---------------v~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 479 ---------------VLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ---------------ccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 1111111 2455677789999999997 788899999853
No 201
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=4e-15 Score=153.74 Aligned_cols=293 Identities=16% Similarity=0.164 Sum_probs=196.4
Q ss_pred CeEEEEecCCeEEEEEecCCCceeEeecccC---ccCcEEEEEEec--CCCEEEEEeCCCeEEEEEcc-CC----ceEEE
Q 004581 98 RRVALACDDGCVRIYRITDSDELIYHRSLPR---VSGRVLSVTWSA--DGNMLYSGSSDGYIRSWDAK-LG----YEIYR 167 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~---h~~~V~~~~~s~--dg~~l~t~~~dg~i~vwd~~-~~----~~~~~ 167 (744)
..++++.+.-.|+|||.+.+..+ ..|.. -...|+.+++-. |..+|++|+.||.||||+-- ++ +.+..
T Consensus 1077 p~i~~ad~r~~i~vwd~e~~~~l---~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTa 1153 (1387)
T KOG1517|consen 1077 PQIAAADDRERIRVWDWEKGRLL---NGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTA 1153 (1387)
T ss_pred ceeEEcCCcceEEEEecccCcee---ccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEe
Confidence 68888888889999999977776 44443 345799998854 45689999999999999732 21 22222
Q ss_pred EEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeec-cccceeEEEEcC-CCCEEEeecCCCe
Q 004581 168 ITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSF-HKGDVNALAAAP-SHNRVFSTGSDGQ 244 (744)
Q Consensus 168 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~-~~~~l~~~~~dg~ 244 (744)
.. +..+...+..+.-.-+.|.... +|++++.-..|+|||....+..+.+.. ....|+++.-+- .|+.+++|..||.
T Consensus 1154 w~-~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGs 1232 (1387)
T KOG1517|consen 1154 WS-SLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGS 1232 (1387)
T ss_pred ec-cccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCc
Confidence 21 1111111111111345666554 777777789999999998777766653 334566665543 4689999999999
Q ss_pred EEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCc--ceeeeeeccCCCCCCCCcccccccCCCCCCcccccccccc
Q 004581 245 VILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHD--VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAH 322 (744)
Q Consensus 245 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 322 (744)
|++||.+..... ..+...+.|+.. |..+.+. +.|
T Consensus 1233 vRvyD~R~a~~d--------------s~v~~~R~h~~~~~Iv~~slq---------~~G--------------------- 1268 (1387)
T KOG1517|consen 1233 VRVYDRRMAPPD--------------SLVCVYREHNDVEPIVHLSLQ---------RQG--------------------- 1268 (1387)
T ss_pred eEEeecccCCcc--------------ccceeecccCCcccceeEEee---------cCC---------------------
Confidence 999999875421 124566778777 7777774 222
Q ss_pred CCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCC
Q 004581 323 LGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSG 402 (744)
Q Consensus 323 ~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~ 402 (744)
...|++|+.||.|++||++......... .+.-|+.
T Consensus 1269 --~~elvSgs~~G~I~~~DlR~~~~e~~~~------------------------------iv~~~~y------------- 1303 (1387)
T KOG1517|consen 1269 --LGELVSGSQDGDIQLLDLRMSSKETFLT------------------------------IVAHWEY------------- 1303 (1387)
T ss_pred --CcceeeeccCCeEEEEecccCcccccce------------------------------eeecccc-------------
Confidence 2269999999999999998631110000 0000110
Q ss_pred CCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEE
Q 004581 403 GHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQL 482 (744)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l 482 (744)
....+++.++++...+|+|+.+.++||++... ..........-+......+.+++|+|-.-.|
T Consensus 1304 ---------------Gs~lTal~VH~hapiiAsGs~q~ikIy~~~G~--~l~~~k~n~~F~~q~~gs~scL~FHP~~~ll 1366 (1387)
T KOG1517|consen 1304 ---------------GSALTALTVHEHAPIIASGSAQLIKIYSLSGE--QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLL 1366 (1387)
T ss_pred ---------------CccceeeeeccCCCeeeecCcceEEEEecChh--hhcccccCcccccCcCCCcceeeecchhHhh
Confidence 13478888999999999988899999999752 2222112222233344478999999999999
Q ss_pred EEEeCCCcEEEEEccCCc
Q 004581 483 IIAGHDRRIYVVDVSSSE 500 (744)
Q Consensus 483 ~~~~~dg~i~v~d~~~~~ 500 (744)
|+|+.|..|.||.....+
T Consensus 1367 AaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1367 AAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hhccCCceEEEeecCCcC
Confidence 999999999999976543
No 202
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=2.8e-15 Score=128.96 Aligned_cols=264 Identities=16% Similarity=0.211 Sum_probs=186.2
Q ss_pred cceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcc
Q 004581 222 GDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPED 301 (744)
Q Consensus 222 ~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~ 301 (744)
..|.+-+++|.+++|++|..+|.|.++.+..-..... ....-..+...++|..+++.++|. |
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa-------~~~gk~~iv~eqahdgpiy~~~f~----------d- 72 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA-------EPPGKLKIVPEQAHDGPIYYLAFH----------D- 72 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc-------CCCCCcceeeccccCCCeeeeeee----------h-
Confidence 3566778999999999999999999999876442111 111112244558999999999983 2
Q ss_pred cccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeC
Q 004581 302 KVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS 381 (744)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 381 (744)
.+|++|+ ||.|+-|.-+++....
T Consensus 73 ------------------------~~Lls~g-dG~V~gw~W~E~~es~-------------------------------- 95 (325)
T KOG0649|consen 73 ------------------------DFLLSGG-DGLVYGWEWNEEEESL-------------------------------- 95 (325)
T ss_pred ------------------------hheeecc-CceEEEeeehhhhhhc--------------------------------
Confidence 2677777 5999998877543211
Q ss_pred CeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCC-EEEEEcCCceEEEEeecCCCCCceEEeee
Q 004581 382 CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGM-LFAYSDHVKPSLFELKKGKVGQGEWIINK 460 (744)
Q Consensus 382 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~la~~~~~~v~l~~~~~~~~~~~~~~~~~ 460 (744)
..-++|.+..+. +...-.-..|.++.+.|... .+.++.|+.++.|+++. +.++
T Consensus 96 ~~K~lwe~~~P~------------------~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~--G~i~------ 149 (325)
T KOG0649|consen 96 ATKRLWEVKIPM------------------QVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED--GRIQ------ 149 (325)
T ss_pred cchhhhhhcCcc------------------ccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecC--CEEE------
Confidence 111223332211 11011225678888887654 45557999999999986 2332
Q ss_pred ccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCC-CCCceEEEEECCCCCEEEEEe
Q 004581 461 RQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQP-SEPPITKMFTSSDGQWLAAVN 539 (744)
Q Consensus 461 ~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~spdg~~las~~ 539 (744)
..+.+|...+.+++--.....+++|++||+++|||+++++.+..+..... ...+.+ -...|-+++.+.| +|++|+
T Consensus 150 r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~--~~~lRp~~g~wigala~~ed--WlvCGg 225 (325)
T KOG0649|consen 150 REYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKN--PNLLRPDWGKWIGALAVNED--WLVCGG 225 (325)
T ss_pred EEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccC--hhhcCcccCceeEEEeccCc--eEEecC
Confidence 67889999999999866677889999999999999999999988876322 122222 3456788887555 999886
Q ss_pred CCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCC
Q 004581 540 CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 596 (744)
Q Consensus 540 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~ 596 (744)
. ..+.+|++...++.+.++-. .++..+.|- .+.+++++.-+.|.-|.+.+-
T Consensus 226 G-p~lslwhLrsse~t~vfpip--a~v~~v~F~---~d~vl~~G~g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 226 G-PKLSLWHLRSSESTCVFPIP--ARVHLVDFV---DDCVLIGGEGNHVQSYTLNGV 276 (325)
T ss_pred C-CceeEEeccCCCceEEEecc--cceeEeeee---cceEEEeccccceeeeeeccE
Confidence 4 46999999999998888753 489999995 467888888889999987654
No 203
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=3.6e-15 Score=136.96 Aligned_cols=313 Identities=12% Similarity=0.085 Sum_probs=196.8
Q ss_pred eeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCCeEE
Q 004581 31 LQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVR 110 (744)
Q Consensus 31 ~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~ 110 (744)
+.+|.+.|.++.||.++ ++||+|++|..++
T Consensus 52 ~~~H~GCiNAlqFS~N~--------------------------------------------------~~L~SGGDD~~~~ 81 (609)
T KOG4227|consen 52 VREHTGCINALQFSHND--------------------------------------------------RFLASGGDDMHGR 81 (609)
T ss_pred hhhhccccceeeeccCC--------------------------------------------------eEEeecCCcceee
Confidence 55799999999999998 6999999999999
Q ss_pred EEEecC------CCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEE
Q 004581 111 IYRITD------SDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIW 184 (744)
Q Consensus 111 iwd~~~------~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 184 (744)
+|++.. .+.+. ..-..|...|.|++|....++|++|..+++|...|+++.+.+..+... ...+.|+
T Consensus 82 ~W~~de~~~~k~~KPI~--~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~------~~~~~VY 153 (609)
T KOG4227|consen 82 VWNVDELMVRKTPKPIG--VMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANEN------NNRGDVY 153 (609)
T ss_pred eechHHHHhhcCCCCce--eccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeeccc------Cccccee
Confidence 999861 22221 112246789999999999999999999999999999999988887631 3456899
Q ss_pred EEEEecCC-eEEEEcCCCCEEEEeCCCcc-eE--EEeeccccceeEEEEcCCC-CEEEeecCCCeEEEEEcccCcCCCCC
Q 004581 185 SLLSLRCG-TLVSADSTGSVQFWDSRHGT-LL--QAHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPND 259 (744)
Q Consensus 185 ~~~~~~~~-~l~s~~~dg~i~vwd~~~~~-~~--~~~~~h~~~v~~l~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~ 259 (744)
.+..+|.. .|++.+.++.|.+||.+..+ .+ ..+.........+.|+|.. .+|++++..+-+-+||.+.......
T Consensus 154 ~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~- 232 (609)
T KOG4227|consen 154 HMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVY- 232 (609)
T ss_pred ecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHH-
Confidence 99999966 89999999999999998644 11 2223345667889999976 5677888888999999987542100
Q ss_pred CCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEE
Q 004581 260 GLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFA 339 (744)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~ 339 (744)
+......+......-.++.|+ |.|. .|.+--....-.+
T Consensus 233 ---------~~~~~~~L~~~~~~~M~~~~~---------~~G~------------------------Q~msiRR~~~P~~ 270 (609)
T KOG4227|consen 233 ---------QRSMFKGLPQENTEWMGSLWS---------PSGN------------------------QFMSIRRGKCPLY 270 (609)
T ss_pred ---------hhhccccCcccchhhhheeeC---------CCCC------------------------eehhhhccCCCEE
Confidence 000001111111112334443 3332 2222222222223
Q ss_pred EecCccCCCCCcccCCCC-CCCccccccceeecCCeEEEEEeCC--eEEEEEeeccCCcccCCCCCCCC--------Ccc
Q 004581 340 YCANEFTKFSPHEICPAP-QRVPIHLVHNTIFSHTSLLLVQYSC--RLDILSVRLENNVESRSSSGGHA--------STS 408 (744)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~--~i~i~~~~~~~~~~~~~~~~~~~--------~~~ 408 (744)
||+.....+.. ..-..+ .......+.+++|-.|.. +++++. .+.+|.+........-.. -|+. -..
T Consensus 271 ~D~~S~R~~V~-k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~-IG~~~~~~~~~~~i~ 347 (609)
T KOG4227|consen 271 FDFISQRCFVL-KSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQ-IGHDEEEMPSEIFIE 347 (609)
T ss_pred eeeecccceeE-eccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccc-cCcchhhCchhheec
Confidence 33322110000 000000 011223455677766665 556554 788888876553322100 1110 011
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCceEEEEee
Q 004581 409 LLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELK 447 (744)
Q Consensus 409 ~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~ 447 (744)
.-..+..+|..-+..+.|+|...+|++ |-...+++|.-.
T Consensus 348 ~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 348 KELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 223344577788899999999988887 578888888754
No 204
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=4.8e-14 Score=139.71 Aligned_cols=486 Identities=13% Similarity=0.110 Sum_probs=291.5
Q ss_pred CeEEEEecCCeEEEEEecCCC------------ceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceE
Q 004581 98 RRVALACDDGCVRIYRITDSD------------ELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 165 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~------------~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~ 165 (744)
.++|+|+.||.+++-.+.+.. .+...+++.||.+.|.-+.|+.+.+.|-|...+|-|.||-+-.|.-.
T Consensus 27 gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~ 106 (1189)
T KOG2041|consen 27 GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWC 106 (1189)
T ss_pred CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHH
Confidence 699999999999999886321 23445788999999999999999999999999999999998777655
Q ss_pred EEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEE--EeeccccceeEEEEcCCCCEEEeecCC
Q 004581 166 YRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQ--AHSFHKGDVNALAAAPSHNRVFSTGSD 242 (744)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~l~~~~~d 242 (744)
..+... ...+.|.+++|..|| .+.....||.|.+=.++ |..+. .+++ .-...+.|++|.+.++.+-.+
T Consensus 107 EEMiNn------RnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~an 177 (1189)
T KOG2041|consen 107 EEMINN------RNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGKELKG--QLLAHVLWSEDLEQALFKKAN 177 (1189)
T ss_pred HHHhhC------cCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecchhcch--heccceeecccHHHHHhhhcC
Confidence 444432 467889999999999 88889999998877666 33332 2222 223468899999988888889
Q ss_pred CeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcccccccccc
Q 004581 243 GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAH 322 (744)
Q Consensus 243 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 322 (744)
|.+.+||....-..... ..-.-.....+......|..+.+.. |. .....
T Consensus 178 ge~hlydnqgnF~~Kl~------~~c~Vn~tg~~s~~~~kia~i~w~~----------g~---------------~~~v~ 226 (1189)
T KOG2041|consen 178 GETHLYDNQGNFERKLE------KDCEVNGTGIFSNFPTKIAEIEWNT----------GP---------------YQPVP 226 (1189)
T ss_pred CcEEEecccccHHHhhh------hceEEeeeeeecCCCccccceeecc----------Cc---------------cccCC
Confidence 99999997654210000 0000000111112222344444421 10 01124
Q ss_pred CCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCC
Q 004581 323 LGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSG 402 (744)
Q Consensus 323 ~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~ 402 (744)
|+.+.|+.+-..|.+.+-.-.+....... . ..-.+..+.|+++|.+|+..+....--.-...+ ..---+.-
T Consensus 227 pdrP~lavcy~nGr~QiMR~eND~~Pvv~------d--tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n-~v~Fysp~ 297 (1189)
T KOG2041|consen 227 PDRPRLAVCYANGRMQIMRSENDPEPVVV------D--TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSN-KVHFYSPY 297 (1189)
T ss_pred CCCCEEEEEEcCceehhhhhcCCCCCeEE------e--cccEeecceecCCCcEEEEccCcccccCccccc-eEEEeccc
Confidence 46679999999998877544332111000 0 013466889999999998654421110000000 00000000
Q ss_pred CCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecC--------------------CCCCceEEeeecc
Q 004581 403 GHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKG--------------------KVGQGEWIINKRQ 462 (744)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~--------------------~~~~~~~~~~~~~ 462 (744)
| +.+..++.++ ..|++++|-..|-.+|.+-++.|.+=+++.. ...+.+|+..+.+
T Consensus 298 G----~i~gtlkvpg-~~It~lsWEg~gLriA~AvdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~ne 372 (1189)
T KOG2041|consen 298 G----HIVGTLKVPG-SCITGLSWEGTGLRIAIAVDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNE 372 (1189)
T ss_pred h----hheEEEecCC-ceeeeeEEcCCceEEEEEecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccCh
Confidence 1 1445555443 6788888888887777776666554443320 1122344433211
Q ss_pred C-------------------------Ccccc---------cc-----------------cE---EEEeeCCCEEEEEeCC
Q 004581 463 L-------------------------PRKLQ---------FA-----------------HS---MIFSYDSSQLIIAGHD 488 (744)
Q Consensus 463 ~-------------------------~~~~~---------~v-----------------~~---i~~spd~~~l~~~~~d 488 (744)
- .++.+ .+ +. .-..-++.+++.++.+
T Consensus 373 k~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e 452 (1189)
T KOG2041|consen 373 KTVKTVTHFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE 452 (1189)
T ss_pred hhhhhhcceeehheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc
Confidence 0 00000 00 00 0001234566666655
Q ss_pred CcEEEEEccCCceeeeeccCc--------------cccc-------ccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEE
Q 004581 489 RRIYVVDVSSSELLHTFTPCR--------------EEHD-------REIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIF 547 (744)
Q Consensus 489 g~i~v~d~~~~~~~~~~~~~~--------------~~~~-------~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iw 547 (744)
.+.+|.....+...++.+.+ +..+ ..+.+...+|.+++.|. ++|..+-..|.|+-|
T Consensus 453 -~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~sd--k~l~vareSG~I~ry 529 (1189)
T KOG2041|consen 453 -RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCISD--KFLMVARESGGIYRY 529 (1189)
T ss_pred -cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeecc--eEEEEEeccCceEEE
Confidence 48888875443322222200 0000 12345678899998864 589999999999999
Q ss_pred ECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCC
Q 004581 548 NLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSP 627 (744)
Q Consensus 548 d~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fsp 627 (744)
.+.+.......+. +..+..++.+- +...||+...-|.+.+.|+.-.--.. .+..-++.....|+++.|..
T Consensus 530 Sl~nv~l~n~y~~--n~~~y~~~lNC-nstRlAiId~~gv~tf~dLd~d~~g~-------ql~~~~~~errDVWd~~Wa~ 599 (1189)
T KOG2041|consen 530 SLNNVVLTNSYPV--NPSIYSIKLNC-NSTRLAIIDLVGVVTFQDLDYDFDGD-------QLKLIYTSERRDVWDYEWAQ 599 (1189)
T ss_pred Eecceeeeecccc--CchheeEeecc-CcchhhhhhhhceeeeeecccccCcc-------eeeeeehhhhhhhhhhhhcc
Confidence 9998876555443 35789999988 88889999889999988887211000 11112334457899999999
Q ss_pred CCCCcEEEEEcCceEEEEeCCCCC
Q 004581 628 SPSSSSVIIYSARAMCVIDFGRPV 651 (744)
Q Consensus 628 dg~~~~~~~~~~~~~~~~~~~~~~ 651 (744)
| +++.+.+..-..++.++-..|.
T Consensus 600 d-Np~llAlmeKtrmyifrgndpe 622 (1189)
T KOG2041|consen 600 D-NPNLLALMEKTRMYIFRGNDPE 622 (1189)
T ss_pred C-CchHHhhhhhceEEEecCcCcc
Confidence 8 6766666666667777654443
No 205
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=3e-14 Score=130.58 Aligned_cols=186 Identities=15% Similarity=0.131 Sum_probs=149.4
Q ss_pred eeEEecCC--CeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCC
Q 004581 7 RLFSSSID--GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS 84 (744)
Q Consensus 7 ~l~~~~~d--~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (744)
++|..+.+ ..+++++.+.+..+..+. ...+|-+|.++.+
T Consensus 58 LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~-------------------------------------- 98 (391)
T KOG2110|consen 58 LVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRK-------------------------------------- 98 (391)
T ss_pred eeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccc--------------------------------------
Confidence 34444433 347888887777777665 4678888888875
Q ss_pred CcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEe--CCCeEEEEEccCC
Q 004581 85 DSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGS--SDGYIRSWDAKLG 162 (744)
Q Consensus 85 ~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~--~dg~i~vwd~~~~ 162 (744)
+|++.-++ .|+|||+.+-+.+..+.....+...+.++++++++.+||-=+ ..|.|.+||+.+-
T Consensus 99 --------------RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl 163 (391)
T KOG2110|consen 99 --------------RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL 163 (391)
T ss_pred --------------eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc
Confidence 45555443 499999997777744444446777788888888888998643 3689999999999
Q ss_pred ceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCC-EEEEeCCCcceEEEeecc--ccceeEEEEcCCCCEEEe
Q 004581 163 YEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGS-VQFWDSRHGTLLQAHSFH--KGDVNALAAAPSHNRVFS 238 (744)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~-i~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~l~~ 238 (744)
+.+..+. .|++.+-+++|+++| +|++++..|+ |||+.+.+|+.+..++-- ...|.+++|+|++++|.+
T Consensus 164 ~~v~~I~--------aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~ 235 (391)
T KOG2110|consen 164 QPVNTIN--------AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA 235 (391)
T ss_pred eeeeEEE--------ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE
Confidence 9999998 699999999999999 8999999998 799999999999988743 346899999999999999
Q ss_pred ecCCCeEEEEEcccCc
Q 004581 239 TGSDGQVILYKASCES 254 (744)
Q Consensus 239 ~~~dg~i~iw~~~~~~ 254 (744)
.+..++|.+|.++...
T Consensus 236 sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 236 SSNTETVHIFKLEKVS 251 (391)
T ss_pred ecCCCeEEEEEecccc
Confidence 9999999999998755
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=5.1e-16 Score=144.88 Aligned_cols=193 Identities=20% Similarity=0.175 Sum_probs=143.2
Q ss_pred ccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecC
Q 004581 93 SVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGL 172 (744)
Q Consensus 93 ~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~ 172 (744)
+..+|..||+|+.||++|||++.+...+ .....|.+.|.++.|||||++|++.+.| ..+||++++|..+.+...
T Consensus 152 f~~~gs~latgg~dg~lRv~~~Ps~~t~---l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~-- 225 (398)
T KOG0771|consen 152 FNGDGSKLATGGTDGTLRVWEWPSMLTI---LEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP-- 225 (398)
T ss_pred EcCCCCEeeeccccceEEEEecCcchhh---hhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC--
Confidence 3345589999999999999998755544 6677899999999999999999999999 999999999977766652
Q ss_pred CCCCCCCceeEEEEEEecCC-----eEEEEc-CCCCEEEEeCCCcce-----EEEeeccccceeEEEEcCCCCEEEeecC
Q 004581 173 GGLGSGPELCIWSLLSLRCG-----TLVSAD-STGSVQFWDSRHGTL-----LQAHSFHKGDVNALAAAPSHNRVFSTGS 241 (744)
Q Consensus 173 ~~~~~~~~~~v~~~~~~~~~-----~l~s~~-~dg~i~vwd~~~~~~-----~~~~~~h~~~v~~l~~~~~~~~l~~~~~ 241 (744)
.........+.|+.|+ ++++.- ..+.|+.|++..... ..+...-...|.+++.+++|++++.|+.
T Consensus 226 ----~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 ----FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred ----cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence 1455567778888776 444333 344566665543111 1111122357999999999999999999
Q ss_pred CCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccc
Q 004581 242 DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWA 321 (744)
Q Consensus 242 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 321 (744)
||.|.+++....+. .....+.|..-|+.+.|+ ||.+
T Consensus 302 dGsVai~~~~~lq~----------------~~~vk~aH~~~VT~ltF~---------Pdsr------------------- 337 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQR----------------LQYVKEAHLGFVTGLTFS---------PDSR------------------- 337 (398)
T ss_pred CCcEEEEEeceeee----------------eEeehhhheeeeeeEEEc---------CCcC-------------------
Confidence 99999999887552 122346799999999998 6655
Q ss_pred cCCCcEEEEecCCCeEEEEecCc
Q 004581 322 HLGVPMLISAGDDTKLFAYCANE 344 (744)
Q Consensus 322 ~~~~~~l~s~~~d~~i~~~~~~~ 344 (744)
++++.+.|....+..+..
T Consensus 338 -----~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 338 -----YLASVSSDNEAAVTKLAV 355 (398)
T ss_pred -----cccccccCCceeEEEEee
Confidence 677777777777666543
No 207
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.6e-14 Score=131.73 Aligned_cols=182 Identities=20% Similarity=0.214 Sum_probs=133.2
Q ss_pred eEEecCCCeEEEEEccCCceeEEeec-cCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCc
Q 004581 8 LFSSSIDGSVSEWDLYDLKQKIVLQS-IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDS 86 (744)
Q Consensus 8 l~~~~~d~~i~iwd~~~~~~~~~~~~-h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (744)
+|++..|-+|++||-+. +....++. -+..|.||+|-|.+.
T Consensus 113 fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsa-------------------------------------- 153 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSA-------------------------------------- 153 (445)
T ss_pred hhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCc--------------------------------------
Confidence 68889999999999776 55555543 357899999999884
Q ss_pred ccccccccccCCeEEEEecCCeEEEEEecCCCceeE---------e--ecccCccCcEEEEEEecCCCEEEEEeC-CCeE
Q 004581 87 DELHEQSVVEDRRVALACDDGCVRIYRITDSDELIY---------H--RSLPRVSGRVLSVTWSADGNMLYSGSS-DGYI 154 (744)
Q Consensus 87 ~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~---------~--~~~~~h~~~V~~~~~s~dg~~l~t~~~-dg~i 154 (744)
..||+||.. -|.||.......... . ..-.+| .+|+++.|.+||..|++++. |..|
T Consensus 154 -----------selavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi 220 (445)
T KOG2139|consen 154 -----------SELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSI 220 (445)
T ss_pred -----------ceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceE
Confidence 478999985 589998862211110 0 122345 68999999999999999986 6789
Q ss_pred EEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCC-cceEEEeeccccceeEEEEcCC
Q 004581 155 RSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH-GTLLQAHSFHKGDVNALAAAPS 232 (744)
Q Consensus 155 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~ 232 (744)
.|||+.+|..+.... .....+.-+.|+||| .|+++.-|+..++|+... .....-.- -.+.|...+|+|+
T Consensus 221 ~iWdpdtg~~~pL~~--------~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspc 291 (445)
T KOG2139|consen 221 MIWDPDTGQKIPLIP--------KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPC 291 (445)
T ss_pred EEEcCCCCCcccccc--------cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCC
Confidence 999999998876664 345678889999999 899999999999996543 33222222 3559999999999
Q ss_pred CCEEEeecCCCeEEEEEcc
Q 004581 233 HNRVFSTGSDGQVILYKAS 251 (744)
Q Consensus 233 ~~~l~~~~~dg~i~iw~~~ 251 (744)
|++|+.+.. |.-++|.+.
T Consensus 292 GsfLLf~~s-gsp~lysl~ 309 (445)
T KOG2139|consen 292 GSFLLFACS-GSPRLYSLT 309 (445)
T ss_pred CCEEEEEEc-CCceEEEEe
Confidence 987765432 334445443
No 208
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.68 E-value=2.8e-14 Score=145.67 Aligned_cols=282 Identities=15% Similarity=0.141 Sum_probs=184.9
Q ss_pred CeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcce--EE----Eeeccccc
Q 004581 152 GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTL--LQ----AHSFHKGD 223 (744)
Q Consensus 152 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~--~~----~~~~h~~~ 223 (744)
+.+.+|+++......... .....|.++.|+|.. .++.|..+|.|.+||++.+.. .. ....|..+
T Consensus 222 ~~~~vW~~~~p~~Pe~~~--------~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~ 293 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVL--------ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEP 293 (555)
T ss_pred ceEEEEecCCCCCceEEE--------ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcC
Confidence 479999998763333332 367889999999977 788999999999999987654 22 23458889
Q ss_pred eeEEEEcCCC--CEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcc
Q 004581 224 VNALAAAPSH--NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPED 301 (744)
Q Consensus 224 v~~l~~~~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~ 301 (744)
++.+.|..+. .-+++++.||.|..|+++.-.......+..... ....-......+++++|.
T Consensus 294 v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~-----~~~~~~~~~~~~t~~~F~------------ 356 (555)
T KOG1587|consen 294 VTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK-----HKGQQSSKAVGATSLKFE------------ 356 (555)
T ss_pred eEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccc-----ccccccccccceeeEeec------------
Confidence 9999997654 449999999999999877644211110000000 000111223345566663
Q ss_pred cccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeC
Q 004581 302 KVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS 381 (744)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 381 (744)
......++.|+.+|.|..-+-........ +.+
T Consensus 357 --------------------~~~p~~FiVGTe~G~v~~~~r~g~~~~~~-----------------~~~----------- 388 (555)
T KOG1587|consen 357 --------------------PTDPNHFIVGTEEGKVYKGCRKGYTPAPE-----------------VSY----------- 388 (555)
T ss_pred --------------------cCCCceEEEEcCCcEEEEEeccCCccccc-----------------ccc-----------
Confidence 12334799999999887643332111000 000
Q ss_pred CeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC-CEEEEEcCCceEEEEeecCCCCCceEEeee
Q 004581 382 CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG-MLFAYSDHVKPSLFELKKGKVGQGEWIINK 460 (744)
Q Consensus 382 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~la~~~~~~v~l~~~~~~~~~~~~~~~~~ 460 (744)
........|...+.++.++|=+ +++.++.|.+++||..... ...+
T Consensus 389 ---------------------------~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~--~~Pl----- 434 (555)
T KOG1587|consen 389 ---------------------------KGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI--ASPL----- 434 (555)
T ss_pred ---------------------------cccccccccCcceEeeecCCCccceeeeeccceeEeccccCC--CCcc-----
Confidence 0011112345788889999977 4555567999999998631 2222
Q ss_pred ccCCcccccccEEEEeeCCC-EEEEEeCCCcEEEEEccCC--ceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEE
Q 004581 461 RQLPRKLQFAHSMIFSYDSS-QLIIAGHDRRIYVVDVSSS--ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA 537 (744)
Q Consensus 461 ~~~~~~~~~v~~i~~spd~~-~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las 537 (744)
..+..+...+++++|||... .++++..+|.|.+||+... .++.+... +....+.+.|+++|+.|++
T Consensus 435 ~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~-----------~~~~l~~~~~s~~g~~lav 503 (555)
T KOG1587|consen 435 LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV-----------CSPALTRVRWSPNGKLLAV 503 (555)
T ss_pred hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccc-----------cccccceeecCCCCcEEEE
Confidence 22333444699999999765 5567777999999999533 34444443 4566778889999999999
Q ss_pred EeCCCcEEEEECCC
Q 004581 538 VNCFGDVYIFNLEI 551 (744)
Q Consensus 538 ~~~dg~i~iwd~~~ 551 (744)
|+..|++++|++..
T Consensus 504 Gd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 504 GDANGTTHILKLSE 517 (555)
T ss_pred ecCCCcEEEEEcCc
Confidence 99999999999964
No 209
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=1.9e-13 Score=132.51 Aligned_cols=333 Identities=18% Similarity=0.229 Sum_probs=207.2
Q ss_pred eEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEE-----eC-----CCeEEEEEccCCceEEEE
Q 004581 99 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSG-----SS-----DGYIRSWDAKLGYEIYRI 168 (744)
Q Consensus 99 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~-----~~-----dg~i~vwd~~~~~~~~~~ 168 (744)
.+.+-+.+..++|++..+...+. ..+. ..+.++.|||-|.+|.|- .. .-.+.+|+++++.....+
T Consensus 47 ~lfA~~~~~~v~i~~~~~~~~~l--t~~~---~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~ 121 (566)
T KOG2315|consen 47 RLFAYSDNQVVKVFEIATLKVVL--CVEL---KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQI 121 (566)
T ss_pred cEEEEEcCCeEEEEEccCCcEEE--Eecc---ceeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhhe
Confidence 45556677899999998665331 2221 178999999999999763 11 235789999997666666
Q ss_pred EecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCC--CEEEe-----ecC
Q 004581 169 TVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSH--NRVFS-----TGS 241 (744)
Q Consensus 169 ~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~--~~l~~-----~~~ 241 (744)
.. ..... |+..|+.|..+++=-..+.+.+|+....+.+ ....|...|..+.++|.+ ..+++ .|.
T Consensus 122 q~-------k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGa 192 (566)
T KOG2315|consen 122 QK-------KMQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGA 192 (566)
T ss_pred eh-------hhhcC-cccccccchhhhhhhhcceEEEEecCCccce-eeeeeccceeeEEecCCCCCceEEEEccCCCCC
Confidence 53 22222 8999999986666666788999999863322 334467889999999863 34443 456
Q ss_pred CCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccc
Q 004581 242 DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWA 321 (744)
Q Consensus 242 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 321 (744)
-+.|++|.......... +........+-..+. |.
T Consensus 193 Pa~vri~~~~~~~~~~~--------------~a~ksFFkadkvqm~--------------------------------WN 226 (566)
T KOG2315|consen 193 PASVRIYKYPEEGQHQP--------------VANKSFFKADKVQMK--------------------------------WN 226 (566)
T ss_pred CcEEEEeccccccccch--------------hhhccccccceeEEE--------------------------------ec
Confidence 77899998773321000 000000011111122 33
Q ss_pred cCCCcEEEEecC--CCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCC
Q 004581 322 HLGVPMLISAGD--DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRS 399 (744)
Q Consensus 322 ~~~~~~l~s~~~--d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~ 399 (744)
..+..+|+.++. |.+=.-| -+.-.++-+.+..
T Consensus 227 ~~gt~LLvLastdVDktn~SY----------------------------------------YGEq~Lyll~t~g------ 260 (566)
T KOG2315|consen 227 KLGTALLVLASTDVDKTNASY----------------------------------------YGEQTLYLLATQG------ 260 (566)
T ss_pred cCCceEEEEEEEeecCCCccc----------------------------------------cccceEEEEEecC------
Confidence 333334443332 2110000 0111122222111
Q ss_pred CCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE--E-cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEe
Q 004581 400 SSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY--S-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFS 476 (744)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~--~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 476 (744)
.-..+.....++|.++.|+|+|+-+++ | .-.++.+|+++. ..++++.. ++-+++-|+
T Consensus 261 ---------~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~----~~v~df~e-------gpRN~~~fn 320 (566)
T KOG2315|consen 261 ---------ESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG----KPVFDFPE-------GPRNTAFFN 320 (566)
T ss_pred ---------ceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC----CEeEeCCC-------CCccceEEC
Confidence 122334445689999999999987766 4 667888998864 22322221 256788999
Q ss_pred eCCCEEEEEeC---CCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeC------CCcEEEE
Q 004581 477 YDSSQLIIAGH---DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC------FGDVYIF 547 (744)
Q Consensus 477 pd~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~------dg~i~iw 547 (744)
|.|++|+.++- .|.|.|||+.+.+++..+.. ..-+-+.|+|||++++++.. |+.++||
T Consensus 321 p~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a-------------~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiw 387 (566)
T KOG2315|consen 321 PHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA-------------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIW 387 (566)
T ss_pred CCCCEEEEeecCCCCCceEEEeccchhhcccccc-------------CCceEEEEcCCCcEEEEEeccccEEecCCeEEE
Confidence 99999988865 48999999999888888875 33566799999999999875 6779999
Q ss_pred ECCCcceEEEEecCCCCceeEEeecC
Q 004581 548 NLEIQRQHWFISRLEGASVTAAGFPP 573 (744)
Q Consensus 548 d~~~~~~~~~~~~~~~~~v~~l~~sp 573 (744)
+..+.......- . .....+.|-|
T Consensus 388 hytG~~l~~~~f--~-sEL~qv~W~P 410 (566)
T KOG2315|consen 388 HYTGSLLHEKMF--K-SELLQVEWRP 410 (566)
T ss_pred EecCceeehhhh--h-HhHhheeeee
Confidence 988764432211 1 1466778877
No 210
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.68 E-value=1.6e-14 Score=151.83 Aligned_cols=185 Identities=17% Similarity=0.155 Sum_probs=133.4
Q ss_pred EEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCe
Q 004581 20 WDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRR 99 (744)
Q Consensus 20 wd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (744)
|++ .|..+..+..|...|..++.++... .+
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~-------------------------------------------------s~ 1063 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHT-------------------------------------------------SL 1063 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCC-------------------------------------------------ce
Confidence 664 6788888888999888888876552 58
Q ss_pred EEEEecCCeEEEEEecC--C--CceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEE-EEEecCCC
Q 004581 100 VALACDDGCVRIYRITD--S--DELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIY-RITVGLGG 174 (744)
Q Consensus 100 la~~~~dg~i~iwd~~~--~--~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~-~~~~~~~~ 174 (744)
+++|+.||+|++|+... + .......++..-..++.++.+.+.++.+|.++.||.|++.++....... ........
T Consensus 1064 FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~ 1143 (1431)
T KOG1240|consen 1064 FVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIP 1143 (1431)
T ss_pred EEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecc
Confidence 99999999999999862 1 2333334444457789999999999999999999999999987621111 11110000
Q ss_pred CCCCCceeEEEEEEecCC---eEEEEcCCCCEEEEeCCCcceEEEee--ccccceeEEEEcCCCCEEEeecCCCeEEEEE
Q 004581 175 LGSGPELCIWSLLSLRCG---TLVSADSTGSVQFWDSRHGTLLQAHS--FHKGDVNALAAAPSHNRVFSTGSDGQVILYK 249 (744)
Q Consensus 175 ~~~~~~~~v~~~~~~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~ 249 (744)
........|..-+|.... .++.+...+.|..||.++...+.+++ ...+.|++++.+|.++++++|+..|.+.+||
T Consensus 1144 n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWD 1223 (1431)
T KOG1240|consen 1144 NLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWD 1223 (1431)
T ss_pred cccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEE
Confidence 011222333444444332 67888889999999998766555544 3357899999999999999999999999999
Q ss_pred cccCc
Q 004581 250 ASCES 254 (744)
Q Consensus 250 ~~~~~ 254 (744)
++-+.
T Consensus 1224 LRF~~ 1228 (1431)
T KOG1240|consen 1224 LRFRV 1228 (1431)
T ss_pred eecCc
Confidence 98754
No 211
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=5.1e-15 Score=142.14 Aligned_cols=166 Identities=16% Similarity=0.150 Sum_probs=129.7
Q ss_pred eeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecC
Q 004581 27 QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDD 106 (744)
Q Consensus 27 ~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d 106 (744)
+...|.||++.|.|++|+.+| .+|++|++|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG--------------------------------------------------~lL~SGSDD 71 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADG--------------------------------------------------ELLASGSDD 71 (758)
T ss_pred hhhhhccccceecceeecCCC--------------------------------------------------CEEeecCCc
Confidence 445789999999999999999 699999999
Q ss_pred CeEEEEEecCCCceeEeecccCccCcEEEEEEec--CCCEEEEEeCCCeEEEEEccCCc----------eEEEEEecCCC
Q 004581 107 GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA--DGNMLYSGSSDGYIRSWDAKLGY----------EIYRITVGLGG 174 (744)
Q Consensus 107 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~--dg~~l~t~~~dg~i~vwd~~~~~----------~~~~~~~~~~~ 174 (744)
-.+.|||....+.+. ..-.+|.+.|.|+.|-| +.+.+++|..|..|+++|+...+ ..+.+.
T Consensus 72 ~r~ivWd~~~~Kllh--sI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~----- 144 (758)
T KOG1310|consen 72 TRLIVWDPFEYKLLH--SISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWS----- 144 (758)
T ss_pred ceEEeecchhcceee--eeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhh-----
Confidence 999999998555553 33359999999999998 45689999999999999997521 112222
Q ss_pred CCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcc-eEE---------EeeccccceeEEEEcCCC-CEEEeecC
Q 004581 175 LGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGT-LLQ---------AHSFHKGDVNALAAAPSH-NRVFSTGS 241 (744)
Q Consensus 175 ~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~-~~~---------~~~~h~~~v~~l~~~~~~-~~l~~~~~ 241 (744)
.|...|..++-.|++ .+.++++||+|+-+|++... +-. .+....-...|+..+|.. .+|++|+.
T Consensus 145 ---cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgs 221 (758)
T KOG1310|consen 145 ---CHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGS 221 (758)
T ss_pred ---hhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCC
Confidence 577788888888988 89999999999999998521 111 111122356789999964 68889999
Q ss_pred CCeEEEEEccc
Q 004581 242 DGQVILYKASC 252 (744)
Q Consensus 242 dg~i~iw~~~~ 252 (744)
|--.++||.+.
T Consensus 222 dpfarLYD~Rr 232 (758)
T KOG1310|consen 222 DPFARLYDRRR 232 (758)
T ss_pred Cchhhhhhhhh
Confidence 99999999654
No 212
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.65 E-value=1.1e-12 Score=120.45 Aligned_cols=296 Identities=16% Similarity=0.156 Sum_probs=201.3
Q ss_pred CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCC--CeEEEEEccCCceEEEEEecCCCC
Q 004581 98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD--GYIRSWDAKLGYEIYRITVGLGGL 175 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~d--g~i~vwd~~~~~~~~~~~~~~~~~ 175 (744)
..|..|+.|| -++|+.+.-+.. .........|.-+-||.. ++|..+.+ +.+++.+.+.+..+..+.
T Consensus 18 ~~lsvGs~~G-yk~~~~~~~~k~---~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~------ 85 (391)
T KOG2110|consen 18 TLLSVGSKDG-YKIFSCSPFEKC---FSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIF------ 85 (391)
T ss_pred eEEEccCCCc-eeEEecCchHHh---hcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceEEEEe------
Confidence 5788888887 578877643332 222223345777778754 55555543 469999999999888886
Q ss_pred CCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeec---cccceeEEEEcCCCCEEEee--cCCCeEEEEEc
Q 004581 176 GSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSF---HKGDVNALAAAPSHNRVFST--GSDGQVILYKA 250 (744)
Q Consensus 176 ~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---h~~~v~~l~~~~~~~~l~~~--~~dg~i~iw~~ 250 (744)
....|.++.++.+..++.--+ .|.|||+++.+++.++.. +...+.++.+++++.+++-- ...|.|.+||.
T Consensus 86 ---fpt~IL~VrmNr~RLvV~Lee--~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~ 160 (391)
T KOG2110|consen 86 ---FPTSILAVRMNRKRLVVCLEE--SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDT 160 (391)
T ss_pred ---cCCceEEEEEccceEEEEEcc--cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEc
Confidence 678899999987754444333 399999999999988764 44557777777777788853 34789999999
Q ss_pred ccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEE
Q 004581 251 SCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLIS 330 (744)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s 330 (744)
.+-+ .+..+..|.+.+-+++|+ ++|. +|++
T Consensus 161 ~nl~-----------------~v~~I~aH~~~lAalafs---------~~G~------------------------llAT 190 (391)
T KOG2110|consen 161 INLQ-----------------PVNTINAHKGPLAALAFS---------PDGT------------------------LLAT 190 (391)
T ss_pred ccce-----------------eeeEEEecCCceeEEEEC---------CCCC------------------------EEEE
Confidence 8865 377888999999999997 6776 9999
Q ss_pred ecCCC-eEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCC--eEEEEEeeccCCcccCCCCCCC---
Q 004581 331 AGDDT-KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC--RLDILSVRLENNVESRSSSGGH--- 404 (744)
Q Consensus 331 ~~~d~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~i~i~~~~~~~~~~~~~~~~~~--- 404 (744)
++..| .||++.+.+.+.+..++.... ...+.+++|+|++.+|++.++ ++.++.+.......+..+..+.
T Consensus 191 ASeKGTVIRVf~v~~G~kl~eFRRG~~-----~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~ 265 (391)
T KOG2110|consen 191 ASEKGTVIRVFSVPEGQKLYEFRRGTY-----PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWF 265 (391)
T ss_pred eccCceEEEEEEcCCccEeeeeeCCce-----eeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCccc
Confidence 99998 568999988777666554332 367889999999999987654 8999988876644333222111
Q ss_pred -------------------CCcceEEEEEecCCCCeEEEEEc--CCCCE-EEEEcCCceEEEEeecCCCCCceEEeeecc
Q 004581 405 -------------------ASTSLLVQVKSKASRKIICSTIS--NSGML-FAYSDHVKPSLFELKKGKVGQGEWIINKRQ 462 (744)
Q Consensus 405 -------------------~~~~~~~~~~~~~~~~i~~~~~s--~~g~~-la~~~~~~v~l~~~~~~~~~~~~~~~~~~~ 462 (744)
...+.......+....-..+++. +.... ++.+.||.++.|.+...+++ ..+-++...
T Consensus 266 ~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gG-ec~lik~h~ 344 (391)
T KOG2110|consen 266 GKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGG-ECALIKRHF 344 (391)
T ss_pred chhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCc-eeEEEEeec
Confidence 11122233333333322333344 34444 45579999999999884333 334455544
Q ss_pred CCcc
Q 004581 463 LPRK 466 (744)
Q Consensus 463 ~~~~ 466 (744)
+.+.
T Consensus 345 ~~~~ 348 (391)
T KOG2110|consen 345 LDGS 348 (391)
T ss_pred cCCc
Confidence 4443
No 213
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.65 E-value=6e-13 Score=132.68 Aligned_cols=331 Identities=13% Similarity=0.092 Sum_probs=186.5
Q ss_pred eEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCC
Q 004581 99 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSG 178 (744)
Q Consensus 99 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 178 (744)
.+++-..+|.|.+.|..+.+.+ .++......-..++|+|||+++++++.||.|.++|+.+++.+.++..
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~---~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-------- 76 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVV---ARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-------- 76 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEE---EEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE---------
T ss_pred EEEEecCCCEEEEEECCCCeEE---EEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec--------
Confidence 3355667899999999877666 56654444445578999999999999999999999999999999983
Q ss_pred CceeEEEEEEecCC-eEEE-EcCCCCEEEEeCCCcceEEEeecc-------ccceeEEEEcCCCCEEEeecC-CCeEEEE
Q 004581 179 PELCIWSLLSLRCG-TLVS-ADSTGSVQFWDSRHGTLLQAHSFH-------KGDVNALAAAPSHNRVFSTGS-DGQVILY 248 (744)
Q Consensus 179 ~~~~v~~~~~~~~~-~l~s-~~~dg~i~vwd~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~l~~~~~-dg~i~iw 248 (744)
......+++++|| ++++ ....+.+.++|.++.+.++.+... ...+..+..+|....++..-. -+.|.+.
T Consensus 77 -G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vV 155 (369)
T PF02239_consen 77 -GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVV 155 (369)
T ss_dssp -SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEE
T ss_pred -CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEE
Confidence 3446789999999 5554 456899999999999999887643 245778888888885555544 4778777
Q ss_pred EcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEE
Q 004581 249 KASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPML 328 (744)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l 328 (744)
|...... ................+. |+++ ++
T Consensus 156 dy~d~~~----------------~~~~~i~~g~~~~D~~~d---------pdgr------------------------y~ 186 (369)
T PF02239_consen 156 DYSDPKN----------------LKVTTIKVGRFPHDGGFD---------PDGR------------------------YF 186 (369)
T ss_dssp ETTTSSC----------------EEEEEEE--TTEEEEEE----------TTSS------------------------EE
T ss_pred Eeccccc----------------cceeeecccccccccccC---------cccc------------------------ee
Confidence 7665431 011111122233345554 4544 54
Q ss_pred -EEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCc
Q 004581 329 -ISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHAST 407 (744)
Q Consensus 329 -~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~ 407 (744)
+....+..|-++|..+..... .+..+... .+
T Consensus 187 ~va~~~sn~i~viD~~~~k~v~--------------------------------------~i~~g~~p----------~~ 218 (369)
T PF02239_consen 187 LVAANGSNKIAVIDTKTGKLVA--------------------------------------LIDTGKKP----------HP 218 (369)
T ss_dssp EEEEGGGTEEEEEETTTTEEEE--------------------------------------EEE-SSSB----------EE
T ss_pred eecccccceeEEEeeccceEEE--------------------------------------Eeeccccc----------cc
Confidence 445566788888877533111 11110000 00
Q ss_pred ceEEEEEecCCCCeEEEEEcCCCCEE-EEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEE-
Q 004581 408 SLLVQVKSKASRKIICSTISNSGMLF-AYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA- 485 (744)
Q Consensus 408 ~~~~~~~~~~~~~i~~~~~s~~g~~l-a~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~- 485 (744)
.....+.......+.. .+..+... ..-....+.+|+... -+. +++.... ..+ .-+.-+|++++|.+.
T Consensus 219 ~~~~~~php~~g~vw~--~~~~~~~~~~~ig~~~v~v~d~~~----wkv--v~~I~~~--G~g-lFi~thP~s~~vwvd~ 287 (369)
T PF02239_consen 219 GPGANFPHPGFGPVWA--TSGLGYFAIPLIGTDPVSVHDDYA----WKV--VKTIPTQ--GGG-LFIKTHPDSRYVWVDT 287 (369)
T ss_dssp TTEEEEEETTTEEEEE--EEBSSSSEEEEEE--TTT-STTTB----TSE--EEEEE-S--SSS---EE--TT-SEEEEE-
T ss_pred cccccccCCCcceEEe--eccccceecccccCCccccchhhc----CeE--EEEEECC--CCc-ceeecCCCCccEEeec
Confidence 0111111111111211 11222222 111222222222211 111 1112222 223 667779999999988
Q ss_pred ---eCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeC--CCcEEEEECCCcceEEEEe
Q 004581 486 ---GHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC--FGDVYIFNLEIQRQHWFIS 559 (744)
Q Consensus 486 ---~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~--dg~i~iwd~~~~~~~~~~~ 559 (744)
...+.|.++|.++.+.+.++... ....+..+.|++||+++..+.. ++.|.|||..+.+....++
T Consensus 288 ~~~~~~~~v~viD~~tl~~~~~i~~~----------~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 288 FLNPDADTVQVIDKKTLKVVKTITPG----------PGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp TT-SSHT-EEEEECCGTEEEE-HHHH----------HT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred cCCCCCceEEEEECcCcceeEEEecc----------CCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 44589999999999888887641 1234999999999997765544 4469999999999988886
No 214
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2.8e-15 Score=141.96 Aligned_cols=306 Identities=15% Similarity=0.207 Sum_probs=215.4
Q ss_pred CCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEe-eccccceeEEEEcCC--CCEEEeecCCCeEEEEEccc
Q 004581 177 SGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAH-SFHKGDVNALAAAPS--HNRVFSTGSDGQVILYKASC 252 (744)
Q Consensus 177 ~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~--~~~l~~~~~dg~i~iw~~~~ 252 (744)
..|.++|..+.|+..| .|++|+.|..|.+||...++....+ .+|...|....|-|. ...+++++.||.+++=.+..
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~ 218 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE 218 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecc
Confidence 4799999999999999 8999999999999999988776555 578888888888884 46899999999999877655
Q ss_pred CcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEec
Q 004581 253 ESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG 332 (744)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~ 332 (744)
... ......+..|.+.|.-+++. |+.. ..|.+++
T Consensus 219 t~~--------------~e~t~rl~~h~g~vhklav~---------p~sp-----------------------~~f~S~g 252 (559)
T KOG1334|consen 219 TGY--------------VENTKRLAPHEGPVHKLAVE---------PDSP-----------------------KPFLSCG 252 (559)
T ss_pred ccc--------------eecceecccccCccceeeec---------CCCC-----------------------Ccccccc
Confidence 331 11134566788889888885 3332 3789999
Q ss_pred CCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEE
Q 004581 333 DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQ 412 (744)
Q Consensus 333 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (744)
.|+.+.-+|++..... ..+. +. +
T Consensus 253 eD~~v~~~Dlr~~~pa-------------------------~~~~-cr-------------------------------~ 275 (559)
T KOG1334|consen 253 EDAVVFHIDLRQDVPA-------------------------EKFV-CR-------------------------------E 275 (559)
T ss_pred cccceeeeeeccCCcc-------------------------ceee-ee-------------------------------c
Confidence 9999998887753211 0000 00 0
Q ss_pred EEecCCCCeEEEEEcCCCC-EEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcc-----cccccEEEEeeCCCEEEEE
Q 004581 413 VKSKASRKIICSTISNSGM-LFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRK-----LQFAHSMIFSYDSSQLIIA 485 (744)
Q Consensus 413 ~~~~~~~~i~~~~~s~~g~-~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~i~~spd~~~l~~~ 485 (744)
...+..-...+++..|-.. .+|+ +.+..+++|+...-......- .-..-++.| .-.|++++|+.++.-|.+.
T Consensus 276 ~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~-~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS 354 (559)
T KOG1334|consen 276 ADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNG-VLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS 354 (559)
T ss_pred cCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccc-hhhhcCCccccccCcccceeEEecCCccceeee
Confidence 0000012355677777664 5777 588899999987522210000 001112222 2279999999887777767
Q ss_pred eCCCcEEEEEcc--CC----------ceeee-eccCcccccccCCCCCCceEEEE-ECCCCCEEEEEeCCCcEEEEECCC
Q 004581 486 GHDRRIYVVDVS--SS----------ELLHT-FTPCREEHDREIQPSEPPITKMF-TSSDGQWLAAVNCFGDVYIFNLEI 551 (744)
Q Consensus 486 ~~dg~i~v~d~~--~~----------~~~~~-~~~~~~~~~~~~~~~~~~i~~l~-~spdg~~las~~~dg~i~iwd~~~ 551 (744)
-.|-.|+++.-. .| ..++. +++|+. ...|..+. |-|...|+++|+..|.|.||+-.+
T Consensus 355 YnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN---------~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t 425 (559)
T KOG1334|consen 355 YNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRN---------SRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT 425 (559)
T ss_pred ecccceEEeccccccCCCCCCCcchhhccchhhccccc---------ccccceeeeccCccceEEecCccceEEEEecch
Confidence 777789999643 23 12222 555322 23466665 578999999999999999999999
Q ss_pred cceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCc
Q 004581 552 QRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 597 (744)
Q Consensus 552 ~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~ 597 (744)
++.+..+.+.+. -|+||.=+| --..||+++-|..|+||.-.+.+
T Consensus 426 ~eii~~MegDr~-VVNCLEpHP-~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 426 GEIIRFMEGDRH-VVNCLEPHP-HLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred hHHHHHhhcccc-eEeccCCCC-CCchhhccCCccceeeecCCccc
Confidence 998887776554 899999999 77899999999999999875443
No 215
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=2.1e-14 Score=148.60 Aligned_cols=173 Identities=16% Similarity=0.125 Sum_probs=119.9
Q ss_pred CCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccc
Q 004581 14 DGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQS 93 (744)
Q Consensus 14 d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (744)
+..|.+||..... .+.+..|...+.+++|||||+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~--------------------------------------------- 216 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGS--------------------------------------------- 216 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCC---------------------------------------------
Confidence 4699999986544 566777888999999999994
Q ss_pred cccCCeEEEEec---CCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEe-CCCeEEEE--EccCCceEEE
Q 004581 94 VVEDRRVALACD---DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGS-SDGYIRSW--DAKLGYEIYR 167 (744)
Q Consensus 94 ~~~~~~la~~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~-~dg~i~vw--d~~~~~~~~~ 167 (744)
.||..+. +..|++||+.+++.. ....+.+|. .+++|+|||+.|+.++ .+|.+.|| |+.++. ...
T Consensus 217 -----~la~~s~~~~~~~i~i~dl~tg~~~-~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~ 286 (429)
T PRK01742 217 -----KLAYVSFENKKSQLVVHDLRSGARK-VVASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQ 286 (429)
T ss_pred -----EEEEEEecCCCcEEEEEeCCCCceE-EEecCCCcc---CceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEe
Confidence 5555543 347999999765432 224444443 4689999999988765 57765555 665555 344
Q ss_pred EEecCCCCCCCCceeEEEEEEecCC-eEE-EEcCCCCEEEEeCCC-cceEEEeeccccceeEEEEcCCCCEEEeecCCCe
Q 004581 168 ITVGLGGLGSGPELCIWSLLSLRCG-TLV-SADSTGSVQFWDSRH-GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQ 244 (744)
Q Consensus 168 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-s~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~ 244 (744)
+. .+...+....|+||| .|+ +++.+|..+||++.. +.....+ .+.. .+.+|+|||++|+.++.++
T Consensus 287 lt--------~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~- 354 (429)
T PRK01742 287 LT--------SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN- 354 (429)
T ss_pred ec--------cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-
Confidence 44 355567889999999 555 445678888887653 2222333 3333 4678999999998887765
Q ss_pred EEEEEcccCc
Q 004581 245 VILYKASCES 254 (744)
Q Consensus 245 i~iw~~~~~~ 254 (744)
+.+||+.++.
T Consensus 355 i~~~Dl~~g~ 364 (429)
T PRK01742 355 VVKQDLTSGS 364 (429)
T ss_pred EEEEECCCCC
Confidence 5568987754
No 216
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.63 E-value=1.4e-13 Score=123.81 Aligned_cols=246 Identities=13% Similarity=0.161 Sum_probs=182.4
Q ss_pred EeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCC
Q 004581 216 AHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISRE 295 (744)
Q Consensus 216 ~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 295 (744)
.+..-..+|+|.+|++|...++++-....|.||.....+ .|+....+..|...|+.+.++
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~--------------~w~~~htls~Hd~~vtgvdWa------ 64 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD--------------LWEPAHTLSEHDKIVTGVDWA------ 64 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCC--------------CceeceehhhhCcceeEEeec------
Confidence 344446799999999999999999999999999987754 388889999999999999996
Q ss_pred CCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeE
Q 004581 296 DPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSL 375 (744)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 375 (744)
|.. +.|++++.|..-++|......... |
T Consensus 65 ---p~s------------------------nrIvtcs~drnayVw~~~~~~~Wk----------------------p--- 92 (361)
T KOG1523|consen 65 ---PKS------------------------NRIVTCSHDRNAYVWTQPSGGTWK----------------------P--- 92 (361)
T ss_pred ---CCC------------------------CceeEccCCCCccccccCCCCeec----------------------c---
Confidence 333 489999999999999774321110 0
Q ss_pred EEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCCCCc
Q 004581 376 LLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQG 454 (744)
Q Consensus 376 ~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~ 454 (744)
.+ .+.++ +...+++.|+|.+..+|++ ....|.++-++. ...
T Consensus 93 -------tl------------------------vLlRi----NrAAt~V~WsP~enkFAVgSgar~isVcy~E~---ENd 134 (361)
T KOG1523|consen 93 -------TL------------------------VLLRI----NRAATCVKWSPKENKFAVGSGARLISVCYYEQ---END 134 (361)
T ss_pred -------ce------------------------eEEEe----ccceeeEeecCcCceEEeccCccEEEEEEEec---ccc
Confidence 01 22233 3778999999999999995 666777888765 222
Q ss_pred eEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEcc-----C-------------CceeeeeccCcccccccC
Q 004581 455 EWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS-----S-------------SELLHTFTPCREEHDREI 516 (744)
Q Consensus 455 ~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~-----~-------------~~~~~~~~~~~~~~~~~~ 516 (744)
|=+.+..-..+...|.++.|+|++-+|++|+.|+..+||..- + |+++..+.
T Consensus 135 -WWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~---------- 203 (361)
T KOG1523|consen 135 -WWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS---------- 203 (361)
T ss_pred -eehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc----------
Confidence 323333333344589999999999999999999999999752 1 12222222
Q ss_pred CCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceE-EEEecCCCCceeEEeecCCCCCeEEEEecCC
Q 004581 517 QPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQH-WFISRLEGASVTAAGFPPQNNNVLIITTSSN 586 (744)
Q Consensus 517 ~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~ 586 (744)
...+.+..+.|+|+|..||-.+.|..+.+=|....... ..+...+ -+.+++.|-. .+.++.++.|.
T Consensus 204 -~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~-lP~ls~~~is--e~~vv~ag~~c 270 (361)
T KOG1523|consen 204 -SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQ-LPLLSVSWIS--ENSVVAAGYDC 270 (361)
T ss_pred -cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhcc-CCceeeEeec--CCceeecCCCC
Confidence 25788999999999999999999999999998877532 2333323 5788888875 45677777774
No 217
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.62 E-value=9.6e-12 Score=117.93 Aligned_cols=166 Identities=14% Similarity=0.146 Sum_probs=127.0
Q ss_pred CCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCC-cEEEEEccCCceeeeecc
Q 004581 429 SGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR-RIYVVDVSSSELLHTFTP 507 (744)
Q Consensus 429 ~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg-~i~v~d~~~~~~~~~~~~ 507 (744)
+|.+++.-+.|+..+++... +.. .++ ++...|.-..+.-+++-++.|..|| .+-|||..+++..+...
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~~---~~~------iqv-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~- 399 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPWD---GYS------IQV-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK- 399 (668)
T ss_pred CCcEEEEEecCcEEEECCCC---Cee------EEc-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC-
Confidence 68888888888877776543 111 112 2333577778888888999999998 89999998777555444
Q ss_pred CcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCC-
Q 004581 508 CREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSN- 586 (744)
Q Consensus 508 ~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~- 586 (744)
.-+.|.++..++||++++++.....|.+.|++++.....-. ...+-|+.++||| +++++|.+-.+|
T Consensus 400 -----------~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idk-S~~~lItdf~~~~-nsr~iAYafP~gy 466 (668)
T COG4946 400 -----------DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK-SEYGLITDFDWHP-NSRWIAYAFPEGY 466 (668)
T ss_pred -----------CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc-cccceeEEEEEcC-CceeEEEecCcce
Confidence 47889999999999999999999999999999998754433 3346899999999 999999998876
Q ss_pred ---eEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCCCC
Q 004581 587 ---QVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPS 630 (744)
Q Consensus 587 ---~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~ 630 (744)
.|++||+.+++.-. .+...+--.+-+|.|||+
T Consensus 467 ~tq~Iklydm~~~Kiy~------------vTT~ta~DfsPaFD~d~r 501 (668)
T COG4946 467 YTQSIKLYDMDGGKIYD------------VTTPTAYDFSPAFDPDGR 501 (668)
T ss_pred eeeeEEEEecCCCeEEE------------ecCCcccccCcccCCCCc
Confidence 89999999987422 222334455678888864
No 218
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=4.8e-13 Score=122.28 Aligned_cols=306 Identities=11% Similarity=0.119 Sum_probs=196.7
Q ss_pred CcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeC
Q 004581 131 GRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDS 208 (744)
Q Consensus 131 ~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~ 208 (744)
--+..++|++.-..+|++..|-.|++||-.. .+...++. .....|.+++|-|.+ .|+.|+.. -|++|..
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks-------~sQrnvtclawRPlsaselavgCr~-gIciW~~ 169 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKS-------VSQRNVTCLAWRPLSASELAVGCRA-GICIWSD 169 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecc-------hhhcceeEEEeccCCcceeeeeecc-eeEEEEc
Confidence 3577899999777788899999999999765 66666653 467789999999988 56777654 4999976
Q ss_pred CC----cce----------EEEeeccccceeEEEEcCCCCEEEeecC-CCeEEEEEcccCcCCCCCCCCcccccceEEEE
Q 004581 209 RH----GTL----------LQAHSFHKGDVNALAAAPSHNRVFSTGS-DGQVILYKASCESIGPNDGLSSSEVIKKWIYV 273 (744)
Q Consensus 209 ~~----~~~----------~~~~~~h~~~v~~l~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (744)
.. +.. +....+| ..|++|.|.+||..+++++. |..|.+||.+++.. +
T Consensus 170 s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~-----------------~ 231 (445)
T KOG2139|consen 170 SRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK-----------------I 231 (445)
T ss_pred CcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc-----------------c
Confidence 53 111 1222344 68999999999999998876 78899999998773 1
Q ss_pred eeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCccc
Q 004581 274 GSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEI 353 (744)
Q Consensus 274 ~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~ 353 (744)
.....--..+.-+.|+ ||+. +|..+.-|+..++|.....-...
T Consensus 232 pL~~~glgg~slLkwS---------Pdgd------------------------~lfaAt~davfrlw~e~q~wt~e---- 274 (445)
T KOG2139|consen 232 PLIPKGLGGFSLLKWS---------PDGD------------------------VLFAATCDAVFRLWQENQSWTKE---- 274 (445)
T ss_pred cccccCCCceeeEEEc---------CCCC------------------------EEEEecccceeeeehhcccceec----
Confidence 1112333456667776 5554 89999999999999654311000
Q ss_pred CCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEE
Q 004581 354 CPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLF 433 (744)
Q Consensus 354 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 433 (744)
-|. -....+...+|+|+|++|
T Consensus 275 --------------------------------rw~---------------------------lgsgrvqtacWspcGsfL 295 (445)
T KOG2139|consen 275 --------------------------------RWI---------------------------LGSGRVQTACWSPCGSFL 295 (445)
T ss_pred --------------------------------cee---------------------------ccCCceeeeeecCCCCEE
Confidence 011 112478888999999999
Q ss_pred EEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCccccc
Q 004581 434 AYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHD 513 (744)
Q Consensus 434 a~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~ 513 (744)
..+..+.-++|.+........ +. -.++......+-|+.. +....+.+-
T Consensus 296 Lf~~sgsp~lysl~f~~~~~~--------~~------------------~~~~~k~~lliaDL~e---~ti~ag~~l--- 343 (445)
T KOG2139|consen 296 LFACSGSPRLYSLTFDGEDSV--------FL------------------RPQSIKRVLLIADLQE---VTICAGQRL--- 343 (445)
T ss_pred EEEEcCCceEEEEeecCCCcc--------cc------------------Ccccceeeeeeccchh---hhhhcCccc---
Confidence 998887878888765111111 00 0111112223334321 111111000
Q ss_pred ccCCCCCCceEEEEECCCCCEEEEEeCCC--------cEEEEECCCcceEEEEe-cC-CCCceeEEeecC--CCCCeEEE
Q 004581 514 REIQPSEPPITKMFTSSDGQWLAAVNCFG--------DVYIFNLEIQRQHWFIS-RL-EGASVTAAGFPP--QNNNVLII 581 (744)
Q Consensus 514 ~~~~~~~~~i~~l~~spdg~~las~~~dg--------~i~iwd~~~~~~~~~~~-~~-~~~~v~~l~~sp--~~~~~l~~ 581 (744)
-.+++.+++|.|.|.|||+.-..+ .|.+||....-...... +. .+..+..+.|+| .++.+|.+
T Consensus 344 -----~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsi 418 (445)
T KOG2139|consen 344 -----CCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSI 418 (445)
T ss_pred -----ccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEE
Confidence 367789999999999999975443 46677776544333221 11 123466777877 35667777
Q ss_pred EecCCeEEEEEcCCC
Q 004581 582 TTSSNQVYVFDVEAK 596 (744)
Q Consensus 582 ~~~d~~v~vwd~~~~ 596 (744)
+=+.|.+.-|++.-.
T Consensus 419 aWsTGriq~ypl~f~ 433 (445)
T KOG2139|consen 419 AWSTGRIQRYPLTFQ 433 (445)
T ss_pred EeccCceEeeeeEEE
Confidence 777777777776543
No 219
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=3.3e-12 Score=124.03 Aligned_cols=352 Identities=11% Similarity=0.145 Sum_probs=212.0
Q ss_pred CeEEEEEecCCCceeEeecccC--ccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEE
Q 004581 107 GCVRIYRITDSDELIYHRSLPR--VSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIW 184 (744)
Q Consensus 107 g~i~iwd~~~~~~~~~~~~~~~--h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 184 (744)
-.+.+|+........ ..+.. -...+...++|++|+++|.+.. ..++|++..++..+.+.. .. .++
T Consensus 11 e~~~l~~~~~~~~~~--~~f~~~~~~~~~~v~~~S~~G~lfA~~~~-~~v~i~~~~~~~~~lt~~---------~~-~~~ 77 (566)
T KOG2315|consen 11 EGFYLFNGPGSKDAV--TVFEQNKTSRPCNVFAYSNNGRLFAYSDN-QVVKVFEIATLKVVLCVE---------LK-KTY 77 (566)
T ss_pred ceeEEeccCCccccc--cccccCCCCCcceeEEEcCCCcEEEEEcC-CeEEEEEccCCcEEEEec---------cc-eee
Confidence 357888875322221 22221 1445788999999998887764 599999998887555443 23 889
Q ss_pred EEEEecCC-eEEE-----EcC-----CCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccC
Q 004581 185 SLLSLRCG-TLVS-----ADS-----TGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE 253 (744)
Q Consensus 185 ~~~~~~~~-~l~s-----~~~-----dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~ 253 (744)
++.|+|-+ +|.+ ... .-.+++|+.+++.....+......-+++.|++|..+.+ =-..+.+.+|+...-
T Consensus 78 ~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~~~f 156 (566)
T KOG2315|consen 78 DLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDLGSF 156 (566)
T ss_pred eeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhh-hhhcceEEEEecCCc
Confidence 99999998 4432 111 23478999998665555554333337899999875433 334577999998874
Q ss_pred cCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEE----
Q 004581 254 SIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLI---- 329 (744)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~---- 329 (744)
. .....-|...|..+.++ |... ...++
T Consensus 157 ~------------------~~~~kl~~~~i~~f~lS---------pgp~----------------------~~~vAvyvP 187 (566)
T KOG2315|consen 157 K------------------TIQHKLSVSGITMLSLS---------PGPE----------------------PPFVAVYVP 187 (566)
T ss_pred c------------------ceeeeeeccceeeEEec---------CCCC----------------------CceEEEEcc
Confidence 3 22334567778888886 2211 11232
Q ss_pred -EecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcc
Q 004581 330 -SAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTS 408 (744)
Q Consensus 330 -s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~ 408 (744)
..|.-..+++|............ .=.| .-.+.....|+-..
T Consensus 188 e~kGaPa~vri~~~~~~~~~~~~a--------------~ksF-------Fkadkvqm~WN~~g----------------- 229 (566)
T KOG2315|consen 188 EKKGAPASVRIYKYPEEGQHQPVA--------------NKSF-------FKADKVQMKWNKLG----------------- 229 (566)
T ss_pred CCCCCCcEEEEeccccccccchhh--------------hccc-------cccceeEEEeccCC-----------------
Confidence 23444578888765222111100 0000 00111111121100
Q ss_pred eEEEEEecCCCCeEEEE---EcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEE
Q 004581 409 LLVQVKSKASRKIICST---ISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA 485 (744)
Q Consensus 409 ~~~~~~~~~~~~i~~~~---~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~ 485 (744)
..+..++ ++..++ .+=.+.+++++.+.. .... ..+. ..++|+++.|+|+|+-+++.
T Consensus 230 ----------t~LLvLastdVDktn~--SYYGEq~Lyll~t~g---~s~~-----V~L~-k~GPVhdv~W~~s~~EF~Vv 288 (566)
T KOG2315|consen 230 ----------TALLVLASTDVDKTNA--SYYGEQTLYLLATQG---ESVS-----VPLL-KEGPVHDVTWSPSGREFAVV 288 (566)
T ss_pred ----------ceEEEEEEEeecCCCc--cccccceEEEEEecC---ceEE-----EecC-CCCCceEEEECCCCCEEEEE
Confidence 0011100 111110 000122344444431 1121 1222 23489999999999876554
Q ss_pred --eCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeC---CCcEEEEECCCcceEEEEec
Q 004581 486 --GHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC---FGDVYIFNLEIQRQHWFISR 560 (744)
Q Consensus 486 --~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~---dg~i~iwd~~~~~~~~~~~~ 560 (744)
-.-..+.|||+. +.++..|. .++-+.+-|+|.|++|+.++. .|.|.|||+.+.+++..+..
T Consensus 289 yGfMPAkvtifnlr-~~~v~df~-------------egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a 354 (566)
T KOG2315|consen 289 YGFMPAKVTIFNLR-GKPVFDFP-------------EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA 354 (566)
T ss_pred EecccceEEEEcCC-CCEeEeCC-------------CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc
Confidence 456789999985 67776664 677889999999999988764 57899999999777665543
Q ss_pred CCCCceeEEeecCCCCCeEEEEec------CCeEEEEEcCCCcc
Q 004581 561 LEGASVTAAGFPPQNNNVLIITTS------SNQVYVFDVEAKQL 598 (744)
Q Consensus 561 ~~~~~v~~l~~sp~~~~~l~~~~~------d~~v~vwd~~~~~~ 598 (744)
..-+-+.|+| ||+++++++. |+.++||++.+..+
T Consensus 355 ---~~tt~~eW~P-dGe~flTATTaPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 355 ---ANTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred ---CCceEEEEcC-CCcEEEEEeccccEEecCCeEEEEecCcee
Confidence 2446689999 9999999875 78999999988754
No 220
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.61 E-value=7.2e-14 Score=123.69 Aligned_cols=233 Identities=12% Similarity=0.146 Sum_probs=166.0
Q ss_pred CCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCC-----EEEEEcCCceEEEEeecCCCCCce
Q 004581 381 SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGM-----LFAYSDHVKPSLFELKKGKVGQGE 455 (744)
Q Consensus 381 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-----~la~~~~~~v~l~~~~~~~~~~~~ 455 (744)
.+.+.|..+.....+ .+..-...|..+++.+-|.|+.+ +||+ ++..+|+|++...+.....
T Consensus 72 ~Nkvqiv~ld~~s~e-------------~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLAT-s~D~LRlWri~~ee~~~~~ 137 (364)
T KOG0290|consen 72 NNKVQIVQLDEDSGE-------------LVEDANFDHPYPVTKLMWIPDSKGVYPDLLAT-SSDFLRLWRIGDEESRVEL 137 (364)
T ss_pred CCeeEEEEEccCCCc-------------eeccCCCCCCCCccceEecCCccccCcchhhc-ccCeEEEEeccCcCCceeh
Confidence 356777776644433 34444467788999999999873 4444 4558999999863332221
Q ss_pred E-EeeeccCCcccccccEEEEee-CCCEEEEEeCCCcEEEEEccCCc---eeeeeccCcccccccCCCCCCceEEEEECC
Q 004581 456 W-IINKRQLPRKLQFAHSMIFSY-DSSQLIIAGHDRRIYVVDVSSSE---LLHTFTPCREEHDREIQPSEPPITKMFTSS 530 (744)
Q Consensus 456 ~-~~~~~~~~~~~~~v~~i~~sp-d~~~l~~~~~dg~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 530 (744)
- .+...+-..+..++++..|.. |-+++.+.+-|-+..|||++++. ...++-. |..+|..++|+.
T Consensus 138 ~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA-----------HDKEV~DIaf~~ 206 (364)
T KOG0290|consen 138 QSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA-----------HDKEVYDIAFLK 206 (364)
T ss_pred hhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe-----------cCcceeEEEecc
Confidence 0 011222334445889999975 66788888999999999998763 3455555 999999999999
Q ss_pred CCC-EEEEEeCCCcEEEEECCCcceEEEEecCC--CCceeEEeecCCCCCeEEEEecCC-eEEEEEcCCCcccccccccc
Q 004581 531 DGQ-WLAAVNCFGDVYIFNLEIQRQHWFISRLE--GASVTAAGFPPQNNNVLIITTSSN-QVYVFDVEAKQLGEWSMQHT 606 (744)
Q Consensus 531 dg~-~las~~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~l~~sp~~~~~l~~~~~d~-~v~vwd~~~~~~~~ws~~~~ 606 (744)
.+. .+|+.+.||.|++||+...+.-..+.... ..+...++|+++|.++||+-..|. .|.|.|+..-.
T Consensus 207 ~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~--------- 277 (364)
T KOG0290|consen 207 GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC--------- 277 (364)
T ss_pred CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC---------
Confidence 654 78999999999999999877654443221 357889999999999999987765 89999998664
Q ss_pred CCcccccccCCCceEEEEeCCCCCCcEEEEEcCce-EEEEeCCC
Q 004581 607 FVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARA-MCVIDFGR 649 (744)
Q Consensus 607 ~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~-~~~~~~~~ 649 (744)
....++++|.+.|.+|+|.|. ++..+...+... ....|+.+
T Consensus 278 -tpva~L~~H~a~VNgIaWaPh-S~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 278 -TPVARLRNHQASVNGIAWAPH-SSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred -cceehhhcCcccccceEecCC-CCceeeecCCcceEEEEeccc
Confidence 356789999999999999997 445554433332 33456654
No 221
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=3.4e-12 Score=114.98 Aligned_cols=161 Identities=16% Similarity=0.204 Sum_probs=122.3
Q ss_pred CCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeC-CCcEEEEEcc
Q 004581 419 RKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DRRIYVVDVS 497 (744)
Q Consensus 419 ~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~-dg~i~v~d~~ 497 (744)
..|.++.++++ .|++...+.|++|.+.. ....+..+.+..-+ .+.++++-+.+..+||.-+. -|.|+|-|+.
T Consensus 95 ~~I~~V~l~r~--riVvvl~~~I~VytF~~--n~k~l~~~et~~NP---kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~ 167 (346)
T KOG2111|consen 95 SEIKAVKLRRD--RIVVVLENKIYVYTFPD--NPKLLHVIETRSNP---KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLA 167 (346)
T ss_pred cceeeEEEcCC--eEEEEecCeEEEEEcCC--ChhheeeeecccCC---CceEeecCCCCceEEEcCCCccceEEEEEhh
Confidence 77888888764 57788888999999875 22222223322212 24555554445556665544 6999999997
Q ss_pred CCce--eeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCc-EEEEECCCcceEEEEecCC-CCceeEEeecC
Q 004581 498 SSEL--LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGD-VYIFNLEIQRQHWFISRLE-GASVTAAGFPP 573 (744)
Q Consensus 498 ~~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~-i~iwd~~~~~~~~~~~~~~-~~~v~~l~~sp 573 (744)
..+. -..+.. |.+.|.+++.+.+|..+|++|..|+ |+|||..+++.+..+.+.. ...|.+|+|||
T Consensus 168 ~~~~~~p~~I~A-----------H~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp 236 (346)
T KOG2111|consen 168 STKPNAPSIINA-----------HDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP 236 (346)
T ss_pred hcCcCCceEEEc-----------ccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC
Confidence 5544 245555 9999999999999999999999997 7899999999998887643 37899999999
Q ss_pred CCCCeEEEEecCCeEEEEEcCCCcc
Q 004581 574 QNNNVLIITTSSNQVYVFDVEAKQL 598 (744)
Q Consensus 574 ~~~~~l~~~~~d~~v~vwd~~~~~~ 598 (744)
+..+|+++++-|+|+||.+.....
T Consensus 237 -~~s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 237 -NSSWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred -CccEEEEEcCCCeEEEEEeecCCC
Confidence 999999999999999999986543
No 222
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.61 E-value=2e-12 Score=129.62 Aligned_cols=289 Identities=16% Similarity=0.228 Sum_probs=183.4
Q ss_pred CeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-----cCCceEEEEeecCCCCCceE
Q 004581 382 CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-----DHVKPSLFELKKGKVGQGEW 456 (744)
Q Consensus 382 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-----~~~~v~l~~~~~~~~~~~~~ 456 (744)
+.|.+++++..... ...+.. ........-++++|++++|.+. ..+.|..|++....+....
T Consensus 13 ~gI~~~~~d~~~g~-----------l~~~~~--~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~- 78 (345)
T PF10282_consen 13 GGIYVFRFDEETGT-----------LTLVQT--VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTL- 78 (345)
T ss_dssp TEEEEEEEETTTTE-----------EEEEEE--EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEE-
T ss_pred CcEEEEEEcCCCCC-----------ceEeee--ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEE-
Confidence 47777777554432 112222 2234667778899999998885 2468888998862123322
Q ss_pred EeeeccCCcccccccEEEEeeCCCEEEEEeC-CCcEEEEEccC-Cceeee---e--ccCcccccccCCCCCCceEEEEEC
Q 004581 457 IINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DRRIYVVDVSS-SELLHT---F--TPCREEHDREIQPSEPPITKMFTS 529 (744)
Q Consensus 457 ~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~-dg~i~v~d~~~-~~~~~~---~--~~~~~~~~~~~~~~~~~i~~l~~s 529 (744)
+.... ......+.++++|++++|+++.. +|.|.++++.. |.+... + .+......++ ......++.|+
T Consensus 79 -~~~~~--~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq---~~~h~H~v~~~ 152 (345)
T PF10282_consen 79 -LNSVP--SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQ---EGPHPHQVVFS 152 (345)
T ss_dssp -EEEEE--ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTT---SSTCEEEEEE-
T ss_pred -eeeec--cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccc---ccccceeEEEC
Confidence 22222 12336778999999999999976 89999999975 544332 1 1111111122 23447899999
Q ss_pred CCCCEEEEEeC-CCcEEEEECCCcc--e--EEEEecCCCCceeEEeecCCCCCeEEEEec-CCeEEEEEcC--CCccccc
Q 004581 530 SDGQWLAAVNC-FGDVYIFNLEIQR--Q--HWFISRLEGASVTAAGFPPQNNNVLIITTS-SNQVYVFDVE--AKQLGEW 601 (744)
Q Consensus 530 pdg~~las~~~-dg~i~iwd~~~~~--~--~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~-d~~v~vwd~~--~~~~~~w 601 (744)
|||++|++.+. ...|++|+++... . ...+....+..+++++|+| +++++.+..+ +++|.+|++. ++.++..
T Consensus 153 pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~ 231 (345)
T PF10282_consen 153 PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEI 231 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEE
Confidence 99999988764 4579999997655 2 2233344557899999999 9998877765 5699999998 5554331
Q ss_pred cccccCCcccccccCCCceEEEEeCCCCCCcEEEEEc--CceEEEEeCCCCCCCCccCcccCCCchhhhhhccCCccccc
Q 004581 602 SMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYS--ARAMCVIDFGRPVDPDDETDMVSGQGSALRKIASTPINGRL 679 (744)
Q Consensus 602 s~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (744)
+....++..+.+. ....+|+++||| ..+++.+ .+.+..+++...- -.|+.+...++.++.
T Consensus 232 --~~~~~~~~~~~~~-~~~~~i~ispdg--~~lyvsnr~~~sI~vf~~d~~~-------------g~l~~~~~~~~~G~~ 293 (345)
T PF10282_consen 232 --QTISTLPEGFTGE-NAPAEIAISPDG--RFLYVSNRGSNSISVFDLDPAT-------------GTLTLVQTVPTGGKF 293 (345)
T ss_dssp --EEEESCETTSCSS-SSEEEEEE-TTS--SEEEEEECTTTEEEEEEECTTT-------------TTEEEEEEEEESSSS
T ss_pred --EEeeecccccccc-CCceeEEEecCC--CEEEEEeccCCEEEEEEEecCC-------------CceEEEEEEeCCCCC
Confidence 1112333332222 378899999996 4555553 4557777763210 014444455566666
Q ss_pred cccccccccccccccCCcceEEEecccceEEeeecCCCeEEEEecCh
Q 004581 680 KRKLRDCQTESNKLHGRKNFEFFAFRDPVLFIGHLSKSSMLIIDKPW 726 (744)
Q Consensus 680 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~vve~p~ 726 (744)
|| .|. +++.+.+|+++..+++.+.++++-.
T Consensus 294 Pr----------------~~~-~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 294 PR----------------HFA-FSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EE----------------EEE-E-TTSSEEEEEETTTTEEEEEEEET
T ss_pred cc----------------EEE-EeCCCCEEEEEecCCCeEEEEEEeC
Confidence 77 788 7899999999999999999999853
No 223
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=1.1e-13 Score=143.24 Aligned_cols=170 Identities=16% Similarity=0.132 Sum_probs=116.7
Q ss_pred EEEEEcCCCCEEEEE--cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEe-CCCcEEEEEccC
Q 004581 422 ICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG-HDRRIYVVDVSS 498 (744)
Q Consensus 422 ~~~~~s~~g~~la~~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~-~dg~i~v~d~~~ 498 (744)
..++|+|||+.|+++ .++...||.++... + .. ..+..+...+....|+|||+.|+..+ .+|...||++..
T Consensus 251 ~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~-~-~~-----~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 251 GAPAFSPDGSRLAFASSKDGVLNIYVMGANG-G-TP-----SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred CceeECCCCCEEEEEEecCCcEEEEEEECCC-C-Ce-----EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 357899999988874 57777777665411 1 11 22333344677899999999887665 478888887743
Q ss_pred -CceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCC
Q 004581 499 -SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNN 577 (744)
Q Consensus 499 -~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~ 577 (744)
+.....+ . +.. ....|||||++|++++.++ +.+||+.+++....... . ....++|+| |++
T Consensus 324 ~~~~~~~l-~-----------~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~--~~~~~~~sP-dG~ 384 (429)
T PRK01742 324 SGGGASLV-G-----------GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-F--LDESPSISP-NGI 384 (429)
T ss_pred CCCCeEEe-c-----------CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-C--CCCCceECC-CCC
Confidence 2222222 2 333 4578999999999887765 66799998876433322 1 345678999 999
Q ss_pred eEEEEecCCeEEEEEcC--CCccccccccccCCcccccccCCCceEEEEeCCC
Q 004581 578 VLIITTSSNQVYVFDVE--AKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 628 (744)
Q Consensus 578 ~l~~~~~d~~v~vwd~~--~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspd 628 (744)
+|++++.++.+.+|.+. +|. ..+.+..+.+.+..++|||-
T Consensus 385 ~i~~~s~~g~~~~l~~~~~~G~-----------~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 385 MIIYSSTQGLGKVLQLVSADGR-----------FKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEEEEEcCCCceEEEEEECCCC-----------ceEEccCCCCCCCCcccCCC
Confidence 99999999988877753 332 24456667788899999984
No 224
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=8.6e-13 Score=132.36 Aligned_cols=450 Identities=13% Similarity=0.118 Sum_probs=267.1
Q ss_pred CCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCC
Q 004581 5 GGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS 84 (744)
Q Consensus 5 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (744)
++.+|-|+ ...|.+-|..+.+.++++.-|...|+.+.|.|-.-.-...
T Consensus 26 ~GLiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~ll------------------------------- 73 (1062)
T KOG1912|consen 26 SGLIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLL------------------------------- 73 (1062)
T ss_pred cceEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhcc-------------------------------
Confidence 45555555 5789999999999999999999999999999865211000
Q ss_pred CcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecC---C-CEEEEEeCCCeEEEEEcc
Q 004581 85 DSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSAD---G-NMLYSGSSDGYIRSWDAK 160 (744)
Q Consensus 85 ~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~d---g-~~l~t~~~dg~i~vwd~~ 160 (744)
.+. .-.-+||++...|.|.+||...+... ..+..|..+|..++|-+. . ..|+.-....+|.+|+..
T Consensus 74 -S~~------~~~lliAsaD~~GrIil~d~~~~s~~---~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntd 143 (1062)
T KOG1912|consen 74 -SPS------SSQLLIASADISGRIILVDFVLASVI---NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTD 143 (1062)
T ss_pred -Ccc------ccceeEEeccccCcEEEEEehhhhhh---hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEcc
Confidence 000 01137899999999999999866655 678889999999999763 3 466666667799999999
Q ss_pred CCceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCC-------cceEEEeecccc---------
Q 004581 161 LGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRH-------GTLLQAHSFHKG--------- 222 (744)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~-------~~~~~~~~~h~~--------- 222 (744)
+|+...... .......|+.+.|-. .+...+..|.+.+-+.-. |+..+.-..|..
T Consensus 144 tG~k~Wk~~--------ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~a 215 (1062)
T KOG1912|consen 144 TGEKFWKYD--------YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETA 215 (1062)
T ss_pred CCceeeccc--------cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhh
Confidence 999998876 344556667777754 566666667666654321 233332222211
Q ss_pred -------c---------eeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceee
Q 004581 223 -------D---------VNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRAL 286 (744)
Q Consensus 223 -------~---------v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 286 (744)
. ...++|+|.-+.++.......+.++|++-.. ++....-..+.+.-+
T Consensus 216 t~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~-----------------~l~vvpier~~akfv 278 (1062)
T KOG1912|consen 216 TGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYEC-----------------CLAVVPIERGGAKFV 278 (1062)
T ss_pred ccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhc-----------------eeEEEEeccCCccee
Confidence 0 1234667765555555567778999987755 233333344444444
Q ss_pred eeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcc--------------
Q 004581 287 TVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHE-------------- 352 (744)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~-------------- 352 (744)
.+- |+. ..+.|+....||.+.+|-.+.........
T Consensus 279 ~vl---------P~~----------------------~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~ 327 (1062)
T KOG1912|consen 279 DVL---------PDP----------------------RRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHV 327 (1062)
T ss_pred Eec---------cCC----------------------CcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEE
Confidence 443 332 33578999999999998765422111100
Q ss_pred cCCCCCCCcccccccee-ecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCC
Q 004581 353 ICPAPQRVPIHLVHNTI-FSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGM 431 (744)
Q Consensus 353 ~~~~~~~~~~~~v~~~~-~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 431 (744)
.++..... ..+...+ ..|+-..+...++...+|.+..+......... .. .- -..|+-++.
T Consensus 328 vr~m~~~r--p~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~----~i-----------el--~~pf~f~~~ 388 (1062)
T KOG1912|consen 328 VRPMEEFR--PVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSS----SI-----------EL--VLPFDFNLS 388 (1062)
T ss_pred Eeechhcc--cceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccc----cc-----------cc--cccccccCc
Confidence 00000000 0000000 01222223334456667776643321100000 00 00 001111111
Q ss_pred E--------EEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCC-------CEEEEEeCCCcEEEEEc
Q 004581 432 L--------FAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS-------SQLIIAGHDRRIYVVDV 496 (744)
Q Consensus 432 ~--------la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~-------~~l~~~~~dg~i~v~d~ 496 (744)
- +-.+.||. . ..+...-.. ...+ ...-..-.|.+ .++|.|...|+|.++|+
T Consensus 389 ~~~v~k~~l~~LS~dg~-----h---~sGs~~~~~--~p~p----~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdv 454 (1062)
T KOG1912|consen 389 TKLVGKTSLISLSDDGS-----H---SSGSTCVRM--RPMP----ELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDV 454 (1062)
T ss_pred eeehhhccccchhhcCC-----C---CCCceeeec--ccCc----ccceeecCCCCCccceeeeeEEeecCCceEEEEEe
Confidence 1 11122210 0 001110000 0000 01111111212 36789999999999999
Q ss_pred cCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEE---------eCCCcEEEEECCCcceEEE--EecCCCCc
Q 004581 497 SSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV---------NCFGDVYIFNLEIQRQHWF--ISRLEGAS 565 (744)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~---------~~dg~i~iwd~~~~~~~~~--~~~~~~~~ 565 (744)
.++..-+.|.. |...|.++.|-.+.+++-.+ ..-+.+.|-|+.+|..... ++.....+
T Consensus 455 st~~v~~~fsv-----------ht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~desp 523 (1062)
T KOG1912|consen 455 STNAVAASFSV-----------HTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESP 523 (1062)
T ss_pred cchhhhhhhcc-----------cccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCc
Confidence 99998888888 89999999998777655332 2234577889998865433 24445589
Q ss_pred eeEEeecCCCCCeEEEEecCCeEEEEEcCCCc
Q 004581 566 VTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 597 (744)
Q Consensus 566 v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~ 597 (744)
|+.+..|. .++||+..-.|.-+.+||+++-.
T Consensus 524 I~~irvS~-~~~yLai~Fr~~plEiwd~kt~~ 554 (1062)
T KOG1912|consen 524 IRAIRVSS-SGRYLAILFRREPLEIWDLKTLR 554 (1062)
T ss_pred ceeeeecc-cCceEEEEecccchHHHhhccch
Confidence 99999999 99999999999999999997764
No 225
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.58 E-value=2.1e-13 Score=123.10 Aligned_cols=153 Identities=16% Similarity=0.255 Sum_probs=112.9
Q ss_pred EEEEEcCCCCEEEEE-c----------CCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEE--eCC
Q 004581 422 ICSTISNSGMLFAYS-D----------HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA--GHD 488 (744)
Q Consensus 422 ~~~~~s~~g~~la~~-~----------~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~--~~d 488 (744)
..+.|+|+|.+|++- . -+...+|.++..+..... ..+.. ..+|.+++|+|+|+.+|+. ..+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~-----i~l~~-~~~I~~~~WsP~g~~favi~g~~~ 82 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVES-----IELKK-EGPIHDVAWSPNGNEFAVIYGSMP 82 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccce-----eeccC-CCceEEEEECcCCCEEEEEEccCC
Confidence 456799999888762 2 124567777543322222 22222 2269999999999997655 356
Q ss_pred CcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeC---CCcEEEEECCCcceEEEEecCCCCc
Q 004581 489 RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC---FGDVYIFNLEIQRQHWFISRLEGAS 565 (744)
Q Consensus 489 g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~---dg~i~iwd~~~~~~~~~~~~~~~~~ 565 (744)
+.|.+||++ ++.+..+. ...+..+.|||+|++||+++. .|.|.+||+++.+.+.... | ..
T Consensus 83 ~~v~lyd~~-~~~i~~~~-------------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~-~~ 145 (194)
T PF08662_consen 83 AKVTLYDVK-GKKIFSFG-------------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--H-SD 145 (194)
T ss_pred cccEEEcCc-ccEeEeec-------------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--c-Cc
Confidence 799999996 66666664 456788999999999999874 4679999999887765543 2 36
Q ss_pred eeEEeecCCCCCeEEEEec------CCeEEEEEcCCCcc
Q 004581 566 VTAAGFPPQNNNVLIITTS------SNQVYVFDVEAKQL 598 (744)
Q Consensus 566 v~~l~~sp~~~~~l~~~~~------d~~v~vwd~~~~~~ 598 (744)
++.++|+| ||++|++++. |+.++||++.+.++
T Consensus 146 ~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 146 ATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred EEEEEEcC-CCCEEEEEEeccceeccccEEEEEecCeEe
Confidence 89999999 9999999874 78999999987754
No 226
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=8.2e-12 Score=128.96 Aligned_cols=131 Identities=16% Similarity=0.193 Sum_probs=90.8
Q ss_pred cccEEEEeeCCCEEEEEeCC-C--cEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCC---C
Q 004581 469 FAHSMIFSYDSSQLIIAGHD-R--RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF---G 542 (744)
Q Consensus 469 ~v~~i~~spd~~~l~~~~~d-g--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~d---g 542 (744)
.+....|+|||+.|+..+.+ + .|+++|+.+++.. .+.. +........|||||++|+..+.+ .
T Consensus 288 ~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~-----------~~~~~~~~~~SpDG~~Ia~~~~~~g~~ 355 (429)
T PRK03629 288 NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW-----------EGSQNQDADVSSDGKFMVMVSSNGGQQ 355 (429)
T ss_pred CcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec-----------CCCCccCEEECCCCCEEEEEEccCCCc
Confidence 45677888998888776653 3 4555566665443 3332 23445678999999999887643 3
Q ss_pred cEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCC---eEEEEEcCCCccccccccccCCcccccccCCCc
Q 004581 543 DVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSN---QVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGE 619 (744)
Q Consensus 543 ~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~---~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~ 619 (744)
.|++||+++++... +... .......|+| ||++|+.++.++ .+.+++++++. ...+.++.+.
T Consensus 356 ~I~~~dl~~g~~~~-Lt~~--~~~~~p~~Sp-DG~~i~~~s~~~~~~~l~~~~~~G~~------------~~~l~~~~~~ 419 (429)
T PRK03629 356 HIAKQDLATGGVQV-LTDT--FLDETPSIAP-NGTMVIYSSSQGMGSVLNLVSTDGRF------------KARLPATDGQ 419 (429)
T ss_pred eEEEEECCCCCeEE-eCCC--CCCCCceECC-CCCEEEEEEcCCCceEEEEEECCCCC------------eEECccCCCC
Confidence 58899999887543 3221 1344678999 999999999886 37788886664 2346667788
Q ss_pred eEEEEeCC
Q 004581 620 VIGLSFSP 627 (744)
Q Consensus 620 v~~i~fsp 627 (744)
+...+|+|
T Consensus 420 ~~~p~Wsp 427 (429)
T PRK03629 420 VKFPAWSP 427 (429)
T ss_pred cCCcccCC
Confidence 88899988
No 227
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.58 E-value=3.1e-11 Score=121.09 Aligned_cols=307 Identities=18% Similarity=0.198 Sum_probs=189.5
Q ss_pred EEEEcCC----CCEEEEeC--CCcceE--EEeeccccceeEEEEcCCCCEEEeecC----CCeEEEEEcccCcCCCCCCC
Q 004581 194 LVSADST----GSVQFWDS--RHGTLL--QAHSFHKGDVNALAAAPSHNRVFSTGS----DGQVILYKASCESIGPNDGL 261 (744)
Q Consensus 194 l~s~~~d----g~i~vwd~--~~~~~~--~~~~~h~~~v~~l~~~~~~~~l~~~~~----dg~i~iw~~~~~~~~~~~~~ 261 (744)
++.|+.. +.|.+|++ +++++. .... .......++++|++++|++... ++.|..|++....
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~------- 73 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT------- 73 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT-------
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc-------
Confidence 4455544 67888877 445443 2222 3455677999999999998866 5799999988742
Q ss_pred CcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEec-CCCeEEEE
Q 004581 262 SSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG-DDTKLFAY 340 (744)
Q Consensus 262 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~-~d~~i~~~ 340 (744)
.....+............++++ ++++ +|+++. .++.+.++
T Consensus 74 ------g~L~~~~~~~~~g~~p~~i~~~---------~~g~------------------------~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 74 ------GTLTLLNSVPSGGSSPCHIAVD---------PDGR------------------------FLYVANYGGGSVSVF 114 (345)
T ss_dssp ------TEEEEEEEEEESSSCEEEEEEC---------TTSS------------------------EEEEEETTTTEEEEE
T ss_pred ------ceeEEeeeeccCCCCcEEEEEe---------cCCC------------------------EEEEEEccCCeEEEE
Confidence 1122233333333444556665 5554 555554 58899999
Q ss_pred ecCccCCCCCc-------ccCCCCCCCccccccceeecCCeEEEEEe---CCeEEEEEeeccCCcccCCCCCCCCCcceE
Q 004581 341 CANEFTKFSPH-------EICPAPQRVPIHLVHNTIFSHTSLLLVQY---SCRLDILSVRLENNVESRSSSGGHASTSLL 410 (744)
Q Consensus 341 ~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~---~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 410 (744)
++.....+... ...+.+.+........+.++|++++++.. .+.+.+|++...... ....
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~-----------l~~~ 183 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK-----------LTPV 183 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T-----------EEEE
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce-----------EEEe
Confidence 99763222111 01122333444667789999999877654 458888888765422 1124
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEE--cCCceEEEEeecCCCCCceEEeeec-cCCcc---cccccEEEEeeCCCEEEE
Q 004581 411 VQVKSKASRKIICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGEWIINKR-QLPRK---LQFAHSMIFSYDSSQLII 484 (744)
Q Consensus 411 ~~~~~~~~~~i~~~~~s~~g~~la~~--~~~~v~l~~~~~~~~~~~~~~~~~~-~~~~~---~~~v~~i~~spd~~~l~~ 484 (744)
..+..+.....+.++|+|+|+++.+. .++.|.+|++....+.... +... .++.. ......|+++|||++|.+
T Consensus 184 ~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~i~ispdg~~lyv 261 (345)
T PF10282_consen 184 DSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTE--IQTISTLPEGFTGENAPAEIAISPDGRFLYV 261 (345)
T ss_dssp EEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE--EEEEESCETTSCSSSSEEEEEE-TTSSEEEE
T ss_pred eccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeE--EEEeeeccccccccCCceeEEEecCCCEEEE
Confidence 45566667889999999999987763 6788999999842332222 2211 12111 125778999999999988
Q ss_pred EeC-CCcEEEEEcc--CCce--eeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEe-CCCcEEEEEC--CCcceEE
Q 004581 485 AGH-DRRIYVVDVS--SSEL--LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN-CFGDVYIFNL--EIQRQHW 556 (744)
Q Consensus 485 ~~~-dg~i~v~d~~--~~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~-~dg~i~iwd~--~~~~~~~ 556 (744)
+.. .+.|.+|++. ++++ +..+.. .......++++|+|++|+++. .++.|.+|++ +++.+..
T Consensus 262 snr~~~sI~vf~~d~~~g~l~~~~~~~~-----------~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 262 SNRGSNSISVFDLDPATGTLTLVQTVPT-----------GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp EECTTTEEEEEEECTTTTTEEEEEEEEE-----------SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred EeccCCEEEEEEEecCCCceEEEEEEeC-----------CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence 765 6789999993 3433 333332 244588999999999999887 5668999977 4665544
Q ss_pred EEecCCCCceeEEee
Q 004581 557 FISRLEGASVTAAGF 571 (744)
Q Consensus 557 ~~~~~~~~~v~~l~~ 571 (744)
.-....-..+.|+.|
T Consensus 331 ~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 331 VGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEESSSEEEEEE
T ss_pred ecccccCCCCEEEeC
Confidence 332223346777776
No 228
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.57 E-value=8.4e-15 Score=137.93 Aligned_cols=257 Identities=16% Similarity=0.221 Sum_probs=201.5
Q ss_pred CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCC
Q 004581 98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS 177 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 177 (744)
++|+.|+..|.|-.+|+.+.... ..+. -...|..+.|-.+.+++|++- ...+.||| ..|..++.++
T Consensus 142 rhlllgGrKGHlAa~Dw~t~~L~---~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHClk-------- 207 (545)
T KOG1272|consen 142 RHLLLGGRKGHLAAFDWVTKKLH---FEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCLK-------- 207 (545)
T ss_pred cEEEecCCccceeeeecccceee---eeee-hhhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEeehh--------
Confidence 79999999999999999865543 2222 345799999999988888875 55999999 5789999987
Q ss_pred CCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCC
Q 004581 178 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 256 (744)
Q Consensus 178 ~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 256 (744)
....|..+.|.|.. +|++++..|.++.-|+.+|+++..+..-.+.+..++-+|-+..+-+|...|+|.+|......
T Consensus 208 -~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske-- 284 (545)
T KOG1272|consen 208 -RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE-- 284 (545)
T ss_pred -hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc--
Confidence 56788999999999 78899999999999999999999998888999999999999888999999999999987765
Q ss_pred CCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCe
Q 004581 257 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK 336 (744)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~ 336 (744)
++..+..|.++|.++++. ++| .++++.|.|..
T Consensus 285 ---------------PLvKiLcH~g~V~siAv~---------~~G------------------------~YMaTtG~Dr~ 316 (545)
T KOG1272|consen 285 ---------------PLVKILCHRGPVSSIAVD---------RGG------------------------RYMATTGLDRK 316 (545)
T ss_pred ---------------hHHHHHhcCCCcceEEEC---------CCC------------------------cEEeecccccc
Confidence 366778899999999995 444 49999999999
Q ss_pred EEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEec
Q 004581 337 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK 416 (744)
Q Consensus 337 i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (744)
+++||++.+..+..... ...+..+++|..|.+.++....+.||.-..........+ -+...
T Consensus 317 ~kIWDlR~~~ql~t~~t--------p~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~p-----------Ym~H~ 377 (545)
T KOG1272|consen 317 VKIWDLRNFYQLHTYRT--------PHPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETP-----------YMNHR 377 (545)
T ss_pred eeEeeeccccccceeec--------CCCccccccccccceeeecCCeeeeehhhhcCCCCCCcc-----------hhhhc
Confidence 99999998775443331 134567889988988888888999997544321100000 01111
Q ss_pred CCCCeEEEEEcCCCCEEEEEcC
Q 004581 417 ASRKIICSTISNSGMLFAYSDH 438 (744)
Q Consensus 417 ~~~~i~~~~~s~~g~~la~~~~ 438 (744)
-...|..+.|.|-...|-+|-.
T Consensus 378 ~~~~V~~l~FcP~EDvLGIGH~ 399 (545)
T KOG1272|consen 378 CGGPVEDLRFCPYEDVLGIGHA 399 (545)
T ss_pred cCcccccceeccHHHeeecccc
Confidence 1246778888887777776643
No 229
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.57 E-value=7.3e-13 Score=120.24 Aligned_cols=310 Identities=12% Similarity=0.170 Sum_probs=193.7
Q ss_pred ccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcc---eeeeeeccCCCCCC
Q 004581 221 KGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDV---RALTVAVPISREDP 297 (744)
Q Consensus 221 ~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---~~l~~~~~~~~~~~ 297 (744)
..-|.++.|...|.+|++|..+|.|.+|.-..... ..+.....++.|...- .++.+.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~------------~ey~~~t~fqshepEFDYLkSleie-------- 84 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK------------GEYNFQTEFQSHEPEFDYLKSLEIE-------- 84 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccc------------cceeeeeeeeccCcccchhhhhhhh--------
Confidence 45688999999999999999999999997654331 1223334444554321 111110
Q ss_pred CCcccccccCCCCCCcccccccccc-CCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceee---cCC
Q 004581 298 LPEDKVKRSRGREKPIDFSYHKWAH-LGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIF---SHT 373 (744)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---s~~ 373 (744)
.++ +...|.. .+...++..+.|.+|++|.+......... ...+...+...+.++.. .+.
T Consensus 85 ---EKi------------nkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~--~~~~~~~~~~~~~~lr~p~~~~~ 147 (433)
T KOG1354|consen 85 ---EKI------------NKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEG--YNLPEEGPPGTITSLRLPVEGRH 147 (433)
T ss_pred ---hhh------------hhceecCCCCccEEEEecCCcceeeeeeecccccccc--ccccccCCCCccceeeceeeccc
Confidence 000 0011211 13346777788999999998764332211 01111111112211110 010
Q ss_pred eEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCC
Q 004581 374 SLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQ 453 (744)
Q Consensus 374 ~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~ 453 (744)
...+. ..+.......|...|.+++++.|++.+.+++|-.|.+|++...++..
T Consensus 148 ~~~ve----------------------------a~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sF 199 (433)
T KOG1354|consen 148 DLEVE----------------------------ASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSF 199 (433)
T ss_pred cceee----------------------------eeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccCCce
Confidence 00000 11233444677889999999999999999999999999999877888
Q ss_pred ceEEeeeccCCcccccccEEEEeeC-CCEEEEEeCCCcEEEEEccCCcee----eeeccCccc-ccccCCCCCCceEEEE
Q 004581 454 GEWIINKRQLPRKLQFAHSMIFSYD-SSQLIIAGHDRRIYVVDVSSSELL----HTFTPCREE-HDREIQPSEPPITKMF 527 (744)
Q Consensus 454 ~~~~~~~~~~~~~~~~v~~i~~spd-~~~l~~~~~dg~i~v~d~~~~~~~----~~~~~~~~~-~~~~~~~~~~~i~~l~ 527 (744)
.+.+++...+.....-|++..|+|. .+.++..+..|+|++-|+....+. +.|..+... ...-...--..|..+.
T Consensus 200 nIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvK 279 (433)
T KOG1354|consen 200 NIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVK 279 (433)
T ss_pred eEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceE
Confidence 8877777666665667899999995 567777788999999999743221 112110000 0000011235688999
Q ss_pred ECCCCCEEEEEeCCCcEEEEECC-CcceEEEEecCC-----------CCce---eEEeecCCCCCeEEEEecCCeEEEEE
Q 004581 528 TSSDGQWLAAVNCFGDVYIFNLE-IQRQHWFISRLE-----------GASV---TAAGFPPQNNNVLIITTSSNQVYVFD 592 (744)
Q Consensus 528 ~spdg~~las~~~dg~i~iwd~~-~~~~~~~~~~~~-----------~~~v---~~l~~sp~~~~~l~~~~~d~~v~vwd 592 (744)
||++|+|+++-+.- +|++||++ ..++..+.+.+. ...| ..++|+- ++.++++|+..+.+++|+
T Consensus 280 Fs~sGryilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 280 FSHSGRYILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred EccCCcEEEEeccc-eeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEec
Confidence 99999999997654 69999995 334444443321 1222 3578998 888999999999999999
Q ss_pred cCCCc
Q 004581 593 VEAKQ 597 (744)
Q Consensus 593 ~~~~~ 597 (744)
+..|.
T Consensus 358 ~~~gs 362 (433)
T KOG1354|consen 358 LARGS 362 (433)
T ss_pred CCCCc
Confidence 87774
No 230
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.56 E-value=1.1e-11 Score=111.86 Aligned_cols=177 Identities=16% Similarity=0.214 Sum_probs=136.3
Q ss_pred CeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCccccccccc
Q 004581 15 GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSV 94 (744)
Q Consensus 15 ~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (744)
+.|.|||=...+++.++. ...+|.+|.+.++-
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~r----------------------------------------------- 106 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRDR----------------------------------------------- 106 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCCe-----------------------------------------------
Confidence 589999977778888887 57899999999964
Q ss_pred ccCCeEEEEecCCeEEEEEecCC-CceeEeecccCccCcEEEEEEecCCCEEEEEe-CCCeEEEEEccCCce--EEEEEe
Q 004581 95 VEDRRVALACDDGCVRIYRITDS-DELIYHRSLPRVSGRVLSVTWSADGNMLYSGS-SDGYIRSWDAKLGYE--IYRITV 170 (744)
Q Consensus 95 ~~~~~la~~~~dg~i~iwd~~~~-~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~-~dg~i~vwd~~~~~~--~~~~~~ 170 (744)
|++.-+ +.|+||...+. +.+....+.... ....+++=+.+..+||.=+ .-|.|+|-|+...+. ...+.
T Consensus 107 -----iVvvl~-~~I~VytF~~n~k~l~~~et~~NP-kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~- 178 (346)
T KOG2111|consen 107 -----IVVVLE-NKIYVYTFPDNPKLLHVIETRSNP-KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIIN- 178 (346)
T ss_pred -----EEEEec-CeEEEEEcCCChhheeeeecccCC-CceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEE-
Confidence 555554 78999999733 333222222222 2344444444555666543 468999999976555 34454
Q ss_pred cCCCCCCCCceeEEEEEEecCC-eEEEEcCCCC-EEEEeCCCcceEEEeec--cccceeEEEEcCCCCEEEeecCCCeEE
Q 004581 171 GLGGLGSGPELCIWSLLSLRCG-TLVSADSTGS-VQFWDSRHGTLLQAHSF--HKGDVNALAAAPSHNRVFSTGSDGQVI 246 (744)
Q Consensus 171 ~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~-i~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~~~~~dg~i~ 246 (744)
.|.+.|.|++.+-+| .+++++..|+ |||||..+|+.++.++. ..+.|.|++|||+..+|++++..|++.
T Consensus 179 -------AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlH 251 (346)
T KOG2111|consen 179 -------AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLH 251 (346)
T ss_pred -------cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEE
Confidence 699999999999999 8999999998 89999999999999874 356899999999999999999999999
Q ss_pred EEEcccCc
Q 004581 247 LYKASCES 254 (744)
Q Consensus 247 iw~~~~~~ 254 (744)
+|.+....
T Consensus 252 iF~l~~~~ 259 (346)
T KOG2111|consen 252 IFSLRDTE 259 (346)
T ss_pred EEEeecCC
Confidence 99998754
No 231
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.56 E-value=1.2e-11 Score=118.73 Aligned_cols=328 Identities=14% Similarity=0.145 Sum_probs=202.1
Q ss_pred ecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcC---
Q 004581 124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS--- 199 (744)
Q Consensus 124 ~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~--- 199 (744)
..+..-.-++..++|||.|.+|++.... .|.+|.-..+..+.++. ...|..+.|+|.+ +|.+=..
T Consensus 26 ~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~----------~~~V~~~~fSP~~kYL~tw~~~pi 94 (561)
T COG5354 26 TRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR----------HPDVKYLDFSPNEKYLVTWSREPI 94 (561)
T ss_pred ccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeee----------cCCceecccCcccceeeeeccCCc
Confidence 4444466789999999999999987765 69999987777666664 2468889999999 6666443
Q ss_pred ------------CCCEEEEeCCCcceEEEeeccccc--ee-EEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcc
Q 004581 200 ------------TGSVQFWDSRHGTLLQAHSFHKGD--VN-ALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSS 264 (744)
Q Consensus 200 ------------dg~i~vwd~~~~~~~~~~~~h~~~--v~-~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 264 (744)
++.+.+||+.+|..+..+.+-..+ .. -+.|+.+..+++-. ....+.++++ +...
T Consensus 95 ~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~--------- 163 (561)
T COG5354 95 IEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNI--------- 163 (561)
T ss_pred cChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCcc---------
Confidence 335999999999999998876655 44 67888888776654 3456899987 3331
Q ss_pred cccceEEEEeeeeec---cCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEe
Q 004581 265 EVIKKWIYVGSVRAH---THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYC 341 (744)
Q Consensus 265 ~~~~~~~~~~~~~~h---~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~ 341 (744)
.....+ ...|....++ |.+ ....+..|-
T Consensus 164 ---------~~~p~~~lr~~gi~dFsis---------P~~-------------------------------n~~~la~~t 194 (561)
T COG5354 164 ---------EEHPFKNLRPVGILDFSIS---------PEG-------------------------------NHDELAYWT 194 (561)
T ss_pred ---------ccCchhhccccceeeEEec---------CCC-------------------------------CCceEEEEc
Confidence 111111 1223334443 221 111233333
Q ss_pred cCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCe
Q 004581 342 ANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKI 421 (744)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 421 (744)
.+..... ..+.+|.+.... .+.+.... .-.-
T Consensus 195 PEk~~kp---------------------------------a~~~i~sIp~~s---------------~l~tk~lf-k~~~ 225 (561)
T COG5354 195 PEKLNKP---------------------------------AMVRILSIPKNS---------------VLVTKNLF-KVSG 225 (561)
T ss_pred cccCCCC---------------------------------cEEEEEEccCCC---------------eeeeeeeE-eecc
Confidence 3221110 122222222111 00000000 0111
Q ss_pred EEEEEcCCCCEEEEE------------cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEe--C
Q 004581 422 ICSTISNSGMLFAYS------------DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG--H 487 (744)
Q Consensus 422 ~~~~~s~~g~~la~~------------~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~--~ 487 (744)
..+-|.+.|++|.+- .+..++|+++.. ..+.+ .. ...++|...+|.|+++.+++.+ .
T Consensus 226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e--~~i~V------~~-~~~~pVhdf~W~p~S~~F~vi~g~~ 296 (561)
T COG5354 226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE--RSIPV------EK-DLKDPVHDFTWEPLSSRFAVISGYM 296 (561)
T ss_pred cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc--cccce------ec-cccccceeeeecccCCceeEEeccc
Confidence 234455666554431 123455666553 12221 11 2245899999999999887665 5
Q ss_pred CCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCC---CcEEEEECCCcceEE-EEecCCC
Q 004581 488 DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF---GDVYIFNLEIQRQHW-FISRLEG 563 (744)
Q Consensus 488 dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~d---g~i~iwd~~~~~~~~-~~~~~~~ 563 (744)
+..+.++|+... +...+. ...-..+.|||.++|++.++-| |.|.+||..+.-... .+..
T Consensus 297 pa~~s~~~lr~N-l~~~~P-------------e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~--- 359 (561)
T COG5354 297 PASVSVFDLRGN-LRFYFP-------------EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG--- 359 (561)
T ss_pred ccceeecccccc-eEEecC-------------CcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec---
Confidence 788999998744 554444 3445678899999999997754 689999988765544 3332
Q ss_pred CceeEEeecCCCCCeEEEEe------cCCeEEEEEcCCCcc
Q 004581 564 ASVTAAGFPPQNNNVLIITT------SSNQVYVFDVEAKQL 598 (744)
Q Consensus 564 ~~v~~l~~sp~~~~~l~~~~------~d~~v~vwd~~~~~~ 598 (744)
..-+-+.|+| |++++.++. .|+.|.|||+.+.+.
T Consensus 360 ~n~s~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 360 LNTSYCDWSP-DGQFYDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred CCceEeeccC-CceEEEecCCCcccccCcceEEEEecCchh
Confidence 3456678999 999988874 378999999987754
No 232
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.55 E-value=7.6e-14 Score=134.00 Aligned_cols=168 Identities=18% Similarity=0.187 Sum_probs=127.6
Q ss_pred eeEEecCCCeEEEEEccCCceeEEee----ccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCC
Q 004581 7 RLFSSSIDGSVSEWDLYDLKQKIVLQ----SIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEN 82 (744)
Q Consensus 7 ~l~~~~~d~~i~iwd~~~~~~~~~~~----~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (744)
-|++|-.-|.|.+.|....+..+.+. -....|+|+.|-|-++.
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~--------------------------------- 233 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDS--------------------------------- 233 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCc---------------------------------
Confidence 37777777888888876633222221 12478999999997753
Q ss_pred CCCcccccccccccCCeEEEEecCCeEEEEEecC--------------CCceeE-----------eecccCccCcEEEEE
Q 004581 83 DSDSDELHEQSVVEDRRVALACDDGCVRIYRITD--------------SDELIY-----------HRSLPRVSGRVLSVT 137 (744)
Q Consensus 83 ~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~--------------~~~~~~-----------~~~~~~h~~~V~~~~ 137 (744)
.+.++-.+|.+++||..- +..+.. ...+.--++.|...+
T Consensus 234 ----------------~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~ 297 (636)
T KOG2394|consen 234 ----------------LFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFA 297 (636)
T ss_pred ----------------eEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccccee
Confidence 455555667777775431 001100 011112245789999
Q ss_pred EecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEE
Q 004581 138 WSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQA 216 (744)
Q Consensus 138 ~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~ 216 (744)
|+|||++||+.+.||.+||+|..+.+.+..++ .--+...|++|+||| +|++|++|--|.||.+..++.+..
T Consensus 298 FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk--------SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR 369 (636)
T KOG2394|consen 298 FSPDGKYLATVSQDGFLRIFDFDTQELLGVMK--------SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR 369 (636)
T ss_pred EcCCCceEEEEecCceEEEeeccHHHHHHHHH--------hhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe
Confidence 99999999999999999999999988877776 456778999999999 999999999999999999999999
Q ss_pred eeccccceeEEEEcC
Q 004581 217 HSFHKGDVNALAAAP 231 (744)
Q Consensus 217 ~~~h~~~v~~l~~~~ 231 (744)
-++|...|..++|.|
T Consensus 370 GqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 370 GQGHKSWVSVVAFDP 384 (636)
T ss_pred ccccccceeeEeecc
Confidence 999999999999987
No 233
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=9.9e-12 Score=123.67 Aligned_cols=468 Identities=14% Similarity=0.133 Sum_probs=264.4
Q ss_pred CCCeeEEecCCCeEEEEEccCC---------------ceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCC
Q 004581 4 PGGRLFSSSIDGSVSEWDLYDL---------------KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDK 68 (744)
Q Consensus 4 ~~~~l~~~~~d~~i~iwd~~~~---------------~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~ 68 (744)
..+++|+||.||.+++.-+.+. ..-+++.||.+.|.-+.|+.+.
T Consensus 25 e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~--------------------- 83 (1189)
T KOG2041|consen 25 ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN--------------------- 83 (1189)
T ss_pred cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc---------------------
Confidence 4578999999999999977542 2335688999999999999988
Q ss_pred CCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEE
Q 004581 69 SNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSG 148 (744)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~ 148 (744)
+.|-+...+|.|.+|=+-.+.-.. ...-......|.+++|+.||+.+...
T Consensus 84 -----------------------------QKLTtSDt~GlIiVWmlykgsW~E-EMiNnRnKSvV~SmsWn~dG~kIcIv 133 (1189)
T KOG2041|consen 84 -----------------------------QKLTTSDTSGLIIVWMLYKGSWCE-EMINNRNKSVVVSMSWNLDGTKICIV 133 (1189)
T ss_pred -----------------------------ccccccCCCceEEEEeeecccHHH-HHhhCcCccEEEEEEEcCCCcEEEEE
Confidence 477788899999999987554321 12334567789999999999999999
Q ss_pred eCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCc-------ceEEE----
Q 004581 149 SSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHG-------TLLQA---- 216 (744)
Q Consensus 149 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~-------~~~~~---- 216 (744)
-.||.|.|=.++..+ +..-.. .......+.|++|. .++.+-..|.+.++|.+.. .+.-.
T Consensus 134 YeDGavIVGsvdGNR-IwgKeL--------kg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~ 204 (1189)
T KOG2041|consen 134 YEDGAVIVGSVDGNR-IWGKEL--------KGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGI 204 (1189)
T ss_pred EccCCEEEEeeccce-ecchhc--------chheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeee
Confidence 999998887764332 221110 11223356677776 5555666677777765421 00000
Q ss_pred eec-------------------------------------------------cccceeEEEEcCCCCEEEeecCC-----
Q 004581 217 HSF-------------------------------------------------HKGDVNALAAAPSHNRVFSTGSD----- 242 (744)
Q Consensus 217 ~~~-------------------------------------------------h~~~v~~l~~~~~~~~l~~~~~d----- 242 (744)
+.. ..-.|..+.|+++|..|+++|.|
T Consensus 205 ~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~ 284 (1189)
T KOG2041|consen 205 FSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADE 284 (1189)
T ss_pred ecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccC
Confidence 000 01124455566666666665543
Q ss_pred ----CeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcccc--
Q 004581 243 ----GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFS-- 316 (744)
Q Consensus 243 ----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 316 (744)
+.|.+|..-... ++.+......|++++|. ..|-...+. -...+-|.
T Consensus 285 ~~d~n~v~Fysp~G~i------------------~gtlkvpg~~It~lsWE---------g~gLriA~A-vdsfiyfanI 336 (1189)
T KOG2041|consen 285 PTDSNKVHFYSPYGHI------------------VGTLKVPGSCITGLSWE---------GTGLRIAIA-VDSFIYFANI 336 (1189)
T ss_pred ccccceEEEeccchhh------------------eEEEecCCceeeeeEEc---------CCceEEEEE-ecceEEEEee
Confidence 123333322221 45556666777777773 111100000 00000000
Q ss_pred --ccccccCCCcEEEE-ecCC---CeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEee
Q 004581 317 --YHKWAHLGVPMLIS-AGDD---TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVR 390 (744)
Q Consensus 317 --~~~w~~~~~~~l~s-~~~d---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~ 390 (744)
--.|..-....+.. ...+ -.|.+||..+..++-.. .....++++..+..+|+.....-.+-...
T Consensus 337 RP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~----------V~~~~~~a~~~ehCvL~~~~d~~~i~e~s 406 (1189)
T KOG2041|consen 337 RPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKT----------VTHFENMAFYREHCVLINRQDDGVIPEYS 406 (1189)
T ss_pred cccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhh----------hcceeehheecccEEEEeccccCCCcchh
Confidence 00121111111111 1111 24666776654332111 12233555555555555432111111111
Q ss_pred ccCCcccCCCCCCCCCcceEEEEE------ecCCC---CeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCC--------
Q 004581 391 LENNVESRSSSGGHASTSLLVQVK------SKASR---KIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQ-------- 453 (744)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~---~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~-------- 453 (744)
+-+.. ..++.+. ..-.. .|.-.-..-++.+++.++...+.+|....+....
T Consensus 407 ~le~~------------~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~r 474 (1189)
T KOG2041|consen 407 TLENR------------SRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIR 474 (1189)
T ss_pred hhhcc------------cceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhc
Confidence 00000 0011111 00011 1222222335677777888888888876421110
Q ss_pred ----------------ceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCC
Q 004581 454 ----------------GEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQ 517 (744)
Q Consensus 454 ----------------~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 517 (744)
...+.....+.+...+|++++.| .++|.++-..|.|+-|.+.+.-+......
T Consensus 475 kegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y~~---------- 542 (1189)
T KOG2041|consen 475 KEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYPV---------- 542 (1189)
T ss_pred ccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeecccc----------
Confidence 11111123344455578888874 68899999999999999988877766663
Q ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEECC---CcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcC
Q 004581 518 PSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE---IQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVE 594 (744)
Q Consensus 518 ~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~---~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~ 594 (744)
...|.+++.+-+...+|..+.-|.+-+.|++ ++.....+.......|+++.|.. |+..|+.--.-..++||+-.
T Consensus 543 --n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~-dNp~llAlmeKtrmyifrgn 619 (1189)
T KOG2041|consen 543 --NPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQ-DNPNLLALMEKTRMYIFRGN 619 (1189)
T ss_pred --CchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhcc-CCchHHhhhhhceEEEecCc
Confidence 6779999999999999999999999999886 34444434444557899999998 55544444445577787655
Q ss_pred CC
Q 004581 595 AK 596 (744)
Q Consensus 595 ~~ 596 (744)
.-
T Consensus 620 dp 621 (1189)
T KOG2041|consen 620 DP 621 (1189)
T ss_pred Cc
Confidence 43
No 234
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.53 E-value=2e-14 Score=135.38 Aligned_cols=186 Identities=18% Similarity=0.218 Sum_probs=160.1
Q ss_pred CCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCC
Q 004581 4 PGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEND 83 (744)
Q Consensus 4 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (744)
.|.+|+.++.-|.|-.+|+.++++...+.. .+.|..+.|-.+.+
T Consensus 140 nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq----------------------------------- 183 (545)
T KOG1272|consen 140 NGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQ----------------------------------- 183 (545)
T ss_pred CccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchH-----------------------------------
Confidence 466799999999999999999999888874 67899999998884
Q ss_pred CCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCc
Q 004581 84 SDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY 163 (744)
Q Consensus 84 ~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~ 163 (744)
++|++- ...++|||-. |.++ +.++.| ..|..+.|-|.--+|++++..|.++--|+.+|+
T Consensus 184 ---------------~~AVAQ-K~y~yvYD~~-GtEl---HClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk 242 (545)
T KOG1272|consen 184 ---------------FFAVAQ-KKYVYVYDNN-GTEL---HCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGK 242 (545)
T ss_pred ---------------HHHhhh-hceEEEecCC-CcEE---eehhhc-CchhhhcccchhheeeecccCCceEEEeechhh
Confidence 444443 3689999975 6666 555544 479999999998889999999999999999999
Q ss_pred eEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCC
Q 004581 164 EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD 242 (744)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~d 242 (744)
.+..+.. ..+.+..++-+|-+ .+-.|...|+|.+|.....+++..+-.|.++|.++++.++|++++|+|.|
T Consensus 243 lVa~~~t--------~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~D 314 (545)
T KOG1272|consen 243 LVASIRT--------GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLD 314 (545)
T ss_pred hhHHHHc--------cCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccc
Confidence 9998874 55667777888877 78889999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcccCc
Q 004581 243 GQVILYKASCES 254 (744)
Q Consensus 243 g~i~iw~~~~~~ 254 (744)
..++|||++.-.
T Consensus 315 r~~kIWDlR~~~ 326 (545)
T KOG1272|consen 315 RKVKIWDLRNFY 326 (545)
T ss_pred cceeEeeecccc
Confidence 999999998743
No 235
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.53 E-value=2.2e-13 Score=130.94 Aligned_cols=184 Identities=15% Similarity=0.184 Sum_probs=127.8
Q ss_pred cCCCCEEEEE-cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCC-EEEEEeCCCcEEEEEccC------
Q 004581 427 SNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSS-QLIIAGHDRRIYVVDVSS------ 498 (744)
Q Consensus 427 s~~g~~la~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~-~l~~~~~dg~i~v~d~~~------ 498 (744)
.|.+--+.++ +.+.+.+++... ..-.++++.+.. .....++++.|-|.+. .++++-.+|.+++||..-
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~-~~~sklfne~r~---i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~ 257 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPIN-FEVSKLFNEERL---INKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATA 257 (636)
T ss_pred CCCCcceEEeeccCceEEecchh-hHHHHhhhhccc---ccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCC
Confidence 3455444444 777777777654 222222222111 1124899999988554 445556699999998631
Q ss_pred --------CceeeeeccCcc---cccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCcee
Q 004581 499 --------SELLHTFTPCRE---EHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVT 567 (744)
Q Consensus 499 --------~~~~~~~~~~~~---~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 567 (744)
+........... +.-....-..+.|..++|||||++||+.+.||.++|||..+.+++..++.+. +...
T Consensus 258 p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF-GGLL 336 (636)
T KOG2394|consen 258 PSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYF-GGLL 336 (636)
T ss_pred CcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhc-cceE
Confidence 111111111000 0001111235678999999999999999999999999999999887776655 5899
Q ss_pred EEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCC
Q 004581 568 AAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSP 627 (744)
Q Consensus 568 ~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fsp 627 (744)
|++||| ||+++++|++|.-|.||.+..+++ ..+-++|+.+|..++|+|
T Consensus 337 CvcWSP-DGKyIvtGGEDDLVtVwSf~erRV-----------VARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 337 CVCWSP-DGKYIVTGGEDDLVTVWSFEERRV-----------VARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEEcC-CccEEEecCCcceEEEEEeccceE-----------EEeccccccceeeEeecc
Confidence 999999 999999999999999999999975 445688999999999996
No 236
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.53 E-value=2.8e-12 Score=135.39 Aligned_cols=277 Identities=13% Similarity=0.169 Sum_probs=180.5
Q ss_pred EeCCCcceEEEeeccccceeEEEEcCCC-CEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcce
Q 004581 206 WDSRHGTLLQAHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVR 284 (744)
Q Consensus 206 wd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 284 (744)
|+.+ |..+..+..|...|..++.+++. .++++|+.||+|++|+...-... ........+.......+.
T Consensus 1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~----------~~s~rS~ltys~~~sr~~ 1102 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE----------GGSARSELTYSPEGSRVE 1102 (1431)
T ss_pred CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC----------cceeeeeEEEeccCCceE
Confidence 7766 89999999999999999998765 99999999999999998764310 011112222222345566
Q ss_pred eeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCcccc
Q 004581 285 ALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHL 364 (744)
Q Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (744)
++... ++++.++.++.||.|.+.++.......
T Consensus 1103 ~vt~~---------------------------------~~~~~~Av~t~DG~v~~~~id~~~~~~--------------- 1134 (1431)
T KOG1240|consen 1103 KVTMC---------------------------------GNGDQFAVSTKDGSVRVLRIDHYNVSK--------------- 1134 (1431)
T ss_pred EEEec---------------------------------cCCCeEEEEcCCCeEEEEEcccccccc---------------
Confidence 66553 234489999999999999887521100
Q ss_pred ccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCC-eEEEEEcC-CCC-EEEE-EcCCc
Q 004581 365 VHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRK-IICSTISN-SGM-LFAY-SDHVK 440 (744)
Q Consensus 365 v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~s~-~g~-~la~-~~~~~ 440 (744)
+.+. .+++ ......+. +..-++.. .+. .|++ ...+.
T Consensus 1135 -----------~~~~---~~ri--------------------------~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~ 1174 (1431)
T KOG1240|consen 1135 -----------RVAT---QVRI--------------------------PNLKKDGVVVSMHAFTAIVQSHVLVYATDLSR 1174 (1431)
T ss_pred -----------ceee---eeec--------------------------ccccCCCceEEeecccccccceeEEEEEeccc
Confidence 0000 0000 00000111 11222222 122 3444 47778
Q ss_pred eEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCC
Q 004581 441 PSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSE 520 (744)
Q Consensus 441 v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (744)
+..|++.. ...+|.++.. ...+.|++++.+|.++++++|+..|.+.+||+.-+.++..+..+ +.
T Consensus 1175 iv~~D~r~---~~~~w~lk~~---~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P----------~~ 1238 (1431)
T KOG1240|consen 1175 IVSWDTRM---RHDAWRLKNQ---LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHP----------AR 1238 (1431)
T ss_pred eEEecchh---hhhHHhhhcC---ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCc----------cc
Confidence 88898876 4445544432 23348999999999999999999999999999888787777643 56
Q ss_pred CceEEEEECCCC---CEEEEEe--CCCcEEEEECCCcceEEEEecCCC------------------CceeEEeecCCCCC
Q 004581 521 PPITKMFTSSDG---QWLAAVN--CFGDVYIFNLEIQRQHWFISRLEG------------------ASVTAAGFPPQNNN 577 (744)
Q Consensus 521 ~~i~~l~~spdg---~~las~~--~dg~i~iwd~~~~~~~~~~~~~~~------------------~~v~~l~~sp~~~~ 577 (744)
.+|..++..|-. .+.++++ ..+.|.+|++.++.....+..... -......+.. .+.
T Consensus 1239 ~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~-~~~ 1317 (1431)
T KOG1240|consen 1239 APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE-KNG 1317 (1431)
T ss_pred CCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeeccc-CCc
Confidence 788888876643 3555444 577899999999977666544311 0112233333 567
Q ss_pred eEEEEecCCeEEEEEcCCCcc
Q 004581 578 VLIITTSSNQVYVFDVEAKQL 598 (744)
Q Consensus 578 ~l~~~~~d~~v~vwd~~~~~~ 598 (744)
.+.+++.|..|+.||...-+.
T Consensus 1318 ~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1318 FLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred eeeecCCccceeeccCCCccc
Confidence 899999999999999987753
No 237
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=4.4e-12 Score=130.98 Aligned_cols=174 Identities=15% Similarity=0.105 Sum_probs=116.8
Q ss_pred eEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccc
Q 004581 16 SVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVV 95 (744)
Q Consensus 16 ~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (744)
.|.+||...... +.+..+...+.+.+|||||+.
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~---------------------------------------------- 212 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSK---------------------------------------------- 212 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCE----------------------------------------------
Confidence 799999875544 445556788999999999954
Q ss_pred cCCeEEEE---ecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEE-eCCC--eEEEEEccCCceEEEEE
Q 004581 96 EDRRVALA---CDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSG-SSDG--YIRSWDAKLGYEIYRIT 169 (744)
Q Consensus 96 ~~~~la~~---~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~-~~dg--~i~vwd~~~~~~~~~~~ 169 (744)
||.. ..+..|.+|++.+++. .....+.+ .+.+++|||||+.|+.. +.+| .|.+||+++++... +.
T Consensus 213 ----la~~s~~~g~~~i~i~dl~~G~~-~~l~~~~~---~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt 283 (429)
T PRK03629 213 ----LAYVTFESGRSALVIQTLANGAV-RQVASFPR---HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VT 283 (429)
T ss_pred ----EEEEEecCCCcEEEEEECCCCCe-EEccCCCC---CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-cc
Confidence 4433 2345799999976543 22233433 34568999999988865 3344 59999998876543 33
Q ss_pred ecCCCCCCCCceeEEEEEEecCC-eEEEEcC-CCC--EEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCC---
Q 004581 170 VGLGGLGSGPELCIWSLLSLRCG-TLVSADS-TGS--VQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD--- 242 (744)
Q Consensus 170 ~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~-dg~--i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~d--- 242 (744)
.+...+....|+||| .|+..+. ++. |.++|+.+++. ..+..+.....+.+|+|||++|+..+.+
T Consensus 284 --------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~ 354 (429)
T PRK03629 284 --------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQ 354 (429)
T ss_pred --------CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCC
Confidence 233456788999999 5655544 444 44446765543 3444445556788999999998876543
Q ss_pred CeEEEEEcccCc
Q 004581 243 GQVILYKASCES 254 (744)
Q Consensus 243 g~i~iw~~~~~~ 254 (744)
..|.+||+.++.
T Consensus 355 ~~I~~~dl~~g~ 366 (429)
T PRK03629 355 QHIAKQDLATGG 366 (429)
T ss_pred ceEEEEECCCCC
Confidence 357888887654
No 238
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.52 E-value=6.2e-11 Score=123.82 Aligned_cols=144 Identities=19% Similarity=0.258 Sum_probs=122.9
Q ss_pred CCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCC
Q 004581 5 GGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS 84 (744)
Q Consensus 5 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (744)
.-++++|+.-+.|.+|++..-+....+.+|.+.|.++.++-||
T Consensus 145 ~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg------------------------------------- 187 (967)
T KOG0974|consen 145 ELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDG------------------------------------- 187 (967)
T ss_pred EEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCC-------------------------------------
Confidence 3458899999999999998444444689999999999999999
Q ss_pred CcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCce
Q 004581 85 DSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYE 164 (744)
Q Consensus 85 ~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~ 164 (744)
+++|+.++|.++++|++++.+.+. ...-+|..+|..++|+|+ .++|++.|.+.++|+. .+..
T Consensus 188 -------------~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~-~~~~ 249 (967)
T KOG0974|consen 188 -------------RYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV-NGTQ 249 (967)
T ss_pred -------------cEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccc--eeEEeccceEEEEEec-ccce
Confidence 699999999999999999877764 466799999999999998 8999999999999976 4666
Q ss_pred EEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCC
Q 004581 165 IYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH 210 (744)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~ 210 (744)
+..+.. .....++.++..++. .+++++.|+.+++||+..
T Consensus 250 l~~y~~-------h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 250 LEVYDE-------HSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ehhhhh-------hhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 666653 344679999999888 899999999999999863
No 239
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.50 E-value=4.7e-09 Score=116.70 Aligned_cols=396 Identities=14% Similarity=0.113 Sum_probs=224.2
Q ss_pred ccCcEEEEEEecCCCEEEEEeC------CCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCe-EEEEcC--
Q 004581 129 VSGRVLSVTWSADGNMLYSGSS------DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGT-LVSADS-- 199 (744)
Q Consensus 129 h~~~V~~~~~s~dg~~l~t~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~s~~~-- 199 (744)
+...-..++|-.||.++|+.+. -+.||||+-+ |.....-. .-.+.-.+++|.|.|. |++.-.
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE--------~v~gLe~~l~WrPsG~lIA~~q~~~ 278 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE--------PVDGLEGALSWRPSGNLIASSQRLP 278 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc--------cCCCccCCccCCCCCCEEEEEEEcC
Confidence 4445678999999999998764 2579999964 65443333 2334455789999994 444433
Q ss_pred -CCCEEEEeCCCcceEEEee----ccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEe
Q 004581 200 -TGSVQFWDSRHGTLLQAHS----FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVG 274 (744)
Q Consensus 200 -dg~i~vwd~~~~~~~~~~~----~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (744)
...|.+|.-+ |-....|. .....|..|+|++|+..|+....|. |.+|...+- .|-..+
T Consensus 279 ~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY---------------HWYLKq 341 (928)
T PF04762_consen 279 DRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY---------------HWYLKQ 341 (928)
T ss_pred CCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC---------------EEEEEE
Confidence 3457777744 43333332 3456899999999999999876555 999998774 465555
Q ss_pred eeeecc-CcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCccc
Q 004581 275 SVRAHT-HDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEI 353 (744)
Q Consensus 275 ~~~~h~-~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~ 353 (744)
.+.... ..+..+.|. ......|.....++.+..++..-......
T Consensus 342 ei~~~~~~~~~~~~Wd--------------------------------pe~p~~L~v~t~~g~~~~~~~~~~v~~s~--- 386 (928)
T PF04762_consen 342 EIRFSSSESVNFVKWD--------------------------------PEKPLRLHVLTSNGQYEIYDFAWDVSRSP--- 386 (928)
T ss_pred EEEccCCCCCCceEEC--------------------------------CCCCCEEEEEecCCcEEEEEEEEEEEecC---
Confidence 555432 233446664 22223566666666665554432110000
Q ss_pred CCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEE
Q 004581 354 CPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLF 433 (744)
Q Consensus 354 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 433 (744)
...-...+...+..+..+.+-.+....-. ..+......-...|.+++|++++..+
T Consensus 387 -------------~~~~~D~g~vaVIDG~~lllTpf~~a~VP------------PPMs~~~l~~~~~v~~vaf~~~~~~~ 441 (928)
T PF04762_consen 387 -------------GSSPNDNGTVAVIDGNKLLLTPFRRAVVP------------PPMSSYELELPSPVNDVAFSPSNSRF 441 (928)
T ss_pred -------------CCCccCceEEEEEeCCeEEEecccccCCC------------chHhceEEcCCCCcEEEEEeCCCCeE
Confidence 00001123344444556666555544322 13333333344889999999999755
Q ss_pred EE-EcCCceEEEEeecCCCCC----c-eEEeeec-----cCCcccccccEEEEeeCCCEEEEEeCC---CcEEEEEccCC
Q 004581 434 AY-SDHVKPSLFELKKGKVGQ----G-EWIINKR-----QLPRKLQFAHSMIFSYDSSQLIIAGHD---RRIYVVDVSSS 499 (744)
Q Consensus 434 a~-~~~~~v~l~~~~~~~~~~----~-~~~~~~~-----~~~~~~~~v~~i~~spd~~~l~~~~~d---g~i~v~d~~~~ 499 (744)
|+ ..++.+.+|......... . ...+... ........+..++|..+...++....+ ..+.++++...
T Consensus 442 avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 521 (928)
T PF04762_consen 442 AVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDS 521 (928)
T ss_pred EEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccC
Confidence 55 799999999976522110 0 0001000 111122367888888777777666554 67888887433
Q ss_pred c---eeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEE-EEecCCCCceeEEeecCCC
Q 004581 500 E---LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHW-FISRLEGASVTAAGFPPQN 575 (744)
Q Consensus 500 ~---~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~-~~~~~~~~~v~~l~~sp~~ 575 (744)
+ .+..... ..+.+..+...++...++.-..+|.+..++........ .++.. .+-..+.... +
T Consensus 522 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~--c~~~~~~~~~-~ 587 (928)
T PF04762_consen 522 ENSASVESSTE-----------VDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQP--CPWMEVCQIN-G 587 (928)
T ss_pred CCceeEEEEec-----------cCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCCC--CcEEEEEEEC-C
Confidence 2 2222222 35566667667766656777789999877766554322 23221 1222233332 2
Q ss_pred CC--eEEEE-ecCCeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCCCCCcEEEEEcCceEEEEeCC
Q 004581 576 NN--VLIIT-TSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFG 648 (744)
Q Consensus 576 ~~--~l~~~-~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~~~~~~~~ 648 (744)
.. .++.| +..|.+++ ++..+ ...+++..+.++ -.++......++++++.
T Consensus 588 ~~~~~~~~GLs~~~~Ly~---n~~~l------------------a~~~tSF~v~~~---~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 588 SEDKRVLFGLSSNGRLYA---NSRLL------------------ASNCTSFAVTDS---FLLFTTTQHTLKFVHLN 639 (928)
T ss_pred ccceeEEEEECCCCEEEE---CCEEE------------------ecCCceEEEEcC---EEEEEecCceEEEEECc
Confidence 22 23333 44455553 33321 146677777543 44444555557888886
No 240
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=1.6e-11 Score=119.31 Aligned_cols=197 Identities=12% Similarity=0.108 Sum_probs=134.7
Q ss_pred CCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccC
Q 004581 429 SGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPC 508 (744)
Q Consensus 429 ~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 508 (744)
...++.+|+...|+-+++.. +.-+ ..+......++++..++...+|++|+.+|.|..||..+...+.++...
T Consensus 145 scDly~~gsg~evYRlNLEq---GrfL-----~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~ 216 (703)
T KOG2321|consen 145 SCDLYLVGSGSEVYRLNLEQ---GRFL-----NPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA 216 (703)
T ss_pred CccEEEeecCcceEEEEccc---cccc-----cccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecc
Confidence 34566666666666666654 3332 334444458999999999999999999999999999887777776642
Q ss_pred cccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeE
Q 004581 509 REEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQV 588 (744)
Q Consensus 509 ~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v 588 (744)
.......-......|+++.|+.||-.+++|..+|.|.|||+.+.++...-......+|..+.|.+.+++--++......+
T Consensus 217 ~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~ 296 (703)
T KOG2321|consen 217 SSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRIL 296 (703)
T ss_pred cccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHh
Confidence 21111111112345999999999999999999999999999998886655444447899999988333333334445689
Q ss_pred EEEEcCCCccccccccccCCcccccccCCCceEEEEeCCCCCCcEEEEEcCceEEEEe
Q 004581 589 YVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVID 646 (744)
Q Consensus 589 ~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~~~~~~ 646 (744)
+|||-.+|+. .........+..++|-|+ .+..++...+.-|..+-
T Consensus 297 kiWd~~~Gk~------------~asiEpt~~lND~C~~p~-sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 297 KIWDECTGKP------------MASIEPTSDLNDFCFVPG-SGMFFTANESSKMHTYY 341 (703)
T ss_pred hhcccccCCc------------eeeccccCCcCceeeecC-CceEEEecCCCcceeEE
Confidence 9999999973 223334466899999997 34444444444444433
No 241
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=6.7e-12 Score=130.44 Aligned_cols=175 Identities=14% Similarity=0.101 Sum_probs=119.1
Q ss_pred CeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCccccccccc
Q 004581 15 GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSV 94 (744)
Q Consensus 15 ~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (744)
..|.+||... ...+.+..+...+.+.+|+|||+
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~---------------------------------------------- 216 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGK---------------------------------------------- 216 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCC----------------------------------------------
Confidence 4699999854 44555666788899999999995
Q ss_pred ccCCeEEEEe---cCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEE-EEeCCC--eEEEEEccCCceEEEE
Q 004581 95 VEDRRVALAC---DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLY-SGSSDG--YIRSWDAKLGYEIYRI 168 (744)
Q Consensus 95 ~~~~~la~~~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~-t~~~dg--~i~vwd~~~~~~~~~~ 168 (744)
.||..+ .+..|++||+.++.. ..+..+.+...+++|+|||+.|+ +.+.+| .|.+||+.+++.. .+
T Consensus 217 ----~la~~s~~~~~~~l~~~dl~~g~~----~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~l 287 (433)
T PRK04922 217 ----KLAYVSFERGRSAIYVQDLATGQR----ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RL 287 (433)
T ss_pred ----EEEEEecCCCCcEEEEEECCCCCE----EEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-EC
Confidence 555444 235799999976554 22333444556889999999876 445555 6999999887653 33
Q ss_pred EecCCCCCCCCceeEEEEEEecCC-eEEEEc-CCCC--EEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCC-
Q 004581 169 TVGLGGLGSGPELCIWSLLSLRCG-TLVSAD-STGS--VQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG- 243 (744)
Q Consensus 169 ~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~-~dg~--i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg- 243 (744)
. .+.......+|+||| .|+..+ .+|. |.++|+.+++. ..+..+.......+|+|||++|+..+.++
T Consensus 288 t--------~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~ 358 (433)
T PRK04922 288 T--------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGNYNARASVSPDGKKIAMVHGSGG 358 (433)
T ss_pred c--------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEECCCC
Confidence 3 233445678999999 565544 4554 66667776654 33333344455789999999998765432
Q ss_pred --eEEEEEcccCc
Q 004581 244 --QVILYKASCES 254 (744)
Q Consensus 244 --~i~iw~~~~~~ 254 (744)
.|.+|++.++.
T Consensus 359 ~~~I~v~d~~~g~ 371 (433)
T PRK04922 359 QYRIAVMDLSTGS 371 (433)
T ss_pred ceeEEEEECCCCC
Confidence 68899987654
No 242
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.48 E-value=4.2e-12 Score=115.39 Aligned_cols=288 Identities=13% Similarity=0.118 Sum_probs=172.8
Q ss_pred CceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcc-----eEEEeeccc------------cceeEEEEcCCC--CEEEe
Q 004581 179 PELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGT-----LLQAHSFHK------------GDVNALAAAPSH--NRVFS 238 (744)
Q Consensus 179 ~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~-----~~~~~~~h~------------~~v~~l~~~~~~--~~l~~ 238 (744)
....|.++.|...| +|++|+.+|.|.++.-.... ....++.|. ..|..+.|.+++ ..++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 55678899999999 99999999999998654321 233444454 358889998876 45677
Q ss_pred ecCCCeEEEEEcccCcCCCCCCC---------------Ccccccc---eEEEEee-eeeccCcceeeeeeccCCCCCCCC
Q 004581 239 TGSDGQVILYKASCESIGPNDGL---------------SSSEVIK---KWIYVGS-VRAHTHDVRALTVAVPISREDPLP 299 (744)
Q Consensus 239 ~~~dg~i~iw~~~~~~~~~~~~~---------------~~~~~~~---~~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~ 299 (744)
.+.|.+|++|.+.........-. +...... ...+.+. -..|+..|.++.++ .
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N---------s 174 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN---------S 174 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec---------C
Confidence 78999999999876543210000 0000000 0001111 13455666666664 3
Q ss_pred cccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCcc-CCCCCcccCCCCCCCccccccceeecCCeE--E
Q 004581 300 EDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEF-TKFSPHEICPAPQRVPIHLVHNTIFSHTSL--L 376 (744)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~ 376 (744)
|.. .++++ .|-.|.+|++.-. +.+......|.........|++..|+|... +
T Consensus 175 D~E------------------------t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f 229 (433)
T KOG1354|consen 175 DKE------------------------TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVF 229 (433)
T ss_pred ccc------------------------eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEE
Confidence 332 55554 4778999998742 233333334444444567889999999654 3
Q ss_pred EEE-eCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCce
Q 004581 377 LVQ-YSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGE 455 (744)
Q Consensus 377 l~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~ 455 (744)
+.+ ..++|++-+++...........-.......-..+...--..|..+.|+++|+++.+-+--+|++|++.........
T Consensus 230 ~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t 309 (433)
T KOG1354|consen 230 VYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVET 309 (433)
T ss_pred EEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceE
Confidence 333 3569999999854321100000000000000001111124577899999999999999999999999764444444
Q ss_pred EEeeecc---CCcccc-----cccEEEEeeCCCEEEEEeCCCcEEEEEccCCc
Q 004581 456 WIINKRQ---LPRKLQ-----FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE 500 (744)
Q Consensus 456 ~~~~~~~---~~~~~~-----~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~ 500 (744)
+.+.... +..... .-..++|+.++.++++|+.....++|++..|.
T Consensus 310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 310 YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 3332210 100000 23357889999999999999999999987664
No 243
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=1.4e-11 Score=114.18 Aligned_cols=261 Identities=13% Similarity=0.143 Sum_probs=179.6
Q ss_pred EEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCC
Q 004581 327 MLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHAS 406 (744)
Q Consensus 327 ~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~ 406 (744)
.++..+.|..+..+.............. .........|.++.....-.+++..++.+.+|....+...
T Consensus 71 vl~~r~~~~~~~~~~~~E~~~~s~~~~~-~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~h----------- 138 (412)
T KOG3881|consen 71 VLNARSADDDLPKFVIEEFEISSSLDDA-KTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLH----------- 138 (412)
T ss_pred EeeccccCcccccccccCCccccccccc-cccccccccccchhhcCCEEEEEecCCcEEEEeccCCccc-----------
Confidence 5555556666666665543322221000 0111122345555555444555667889999998865522
Q ss_pred cceEEEEEecCCCCeEEEEEcCCCCE-EEEE-cC--CceEEEEeecCCCCCceEEeeeccCCc----ccccccEEEEeeC
Q 004581 407 TSLLVQVKSKASRKIICSTISNSGML-FAYS-DH--VKPSLFELKKGKVGQGEWIINKRQLPR----KLQFAHSMIFSYD 478 (744)
Q Consensus 407 ~~~~~~~~~~~~~~i~~~~~s~~g~~-la~~-~~--~~v~l~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~i~~spd 478 (744)
...+..+... ..+..+.-++.-.. +|+| .. ..+++|++.. ..++|..+...-.. ..-.++.+.|-+.
T Consensus 139 ss~l~~la~g--~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~---~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g 213 (412)
T KOG3881|consen 139 SSKLIKLATG--PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQ---SKQIWSAKNVPNDRLGLRVPVWITDIRFLEG 213 (412)
T ss_pred cccceeeecC--CceeeeccCCCCCceEecCchhcccceeeeeccc---ceeeeeccCCCCccccceeeeeeccceecCC
Confidence 1233333333 44555555665555 4444 55 7899999986 47788765432111 1116788999887
Q ss_pred --CCEEEEEeCCCcEEEEEccCC-ceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceE
Q 004581 479 --SSQLIIAGHDRRIYVVDVSSS-ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQH 555 (744)
Q Consensus 479 --~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~ 555 (744)
...||+++.-+.+++||...+ +++.+|.- ...+|+++..-|+|+++.+|..-|.+..||+.+++..
T Consensus 214 ~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~-----------~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~ 282 (412)
T KOG3881|consen 214 SPNYKFATITRYHQVRLYDTRHQRRPVAQFDF-----------LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL 282 (412)
T ss_pred CCCceEEEEecceeEEEecCcccCcceeEecc-----------ccCcceeeeecCCCcEEEEecccchhheecccCceee
Confidence 889999999999999999754 57777876 6889999999999999999999999999999999987
Q ss_pred EEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCC
Q 004581 556 WFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 628 (744)
Q Consensus 556 ~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspd 628 (744)
......-.+.|+++..+| ...+|++++-|..|+|+|+++.++. .+.|. ....+.|-+.++
T Consensus 283 g~~~kg~tGsirsih~hp-~~~~las~GLDRyvRIhD~ktrkll----------~kvYv--Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 283 GCGLKGITGSIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKLL----------HKVYV--KSRLTFILLRDD 342 (412)
T ss_pred ccccCCccCCcceEEEcC-CCceEEeeccceeEEEeecccchhh----------hhhhh--hccccEEEecCC
Confidence 763344557999999999 8899999999999999999997652 22232 356777888765
No 244
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=1.6e-11 Score=127.75 Aligned_cols=174 Identities=15% Similarity=0.122 Sum_probs=122.6
Q ss_pred CeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCccccccccc
Q 004581 15 GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSV 94 (744)
Q Consensus 15 ~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (744)
..|.+||... ...+.+..|...+.+.+|+|||+
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~---------------------------------------------- 214 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQ---------------------------------------------- 214 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCC----------------------------------------------
Confidence 3889999754 55566777888999999999995
Q ss_pred ccCCeEEEEe---cCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEE-EEeCCCe--EEEEEccCCceEEEE
Q 004581 95 VEDRRVALAC---DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLY-SGSSDGY--IRSWDAKLGYEIYRI 168 (744)
Q Consensus 95 ~~~~~la~~~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~-t~~~dg~--i~vwd~~~~~~~~~~ 168 (744)
.||..+ .+..|.+||+.+++. +.+..+.+.+.+.+|+|||+.|+ +.+.++. |.+||+.++.. ..+
T Consensus 215 ----~lay~s~~~g~~~i~~~dl~~g~~----~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~L 285 (435)
T PRK05137 215 ----EITYMSYANGRPRVYLLDLETGQR----ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRL 285 (435)
T ss_pred ----EEEEEEecCCCCEEEEEECCCCcE----EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEc
Confidence 444443 357899999986654 34445667788999999999876 4455554 77889887765 344
Q ss_pred EecCCCCCCCCceeEEEEEEecCC-eEEEEc-CCC--CEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCC--
Q 004581 169 TVGLGGLGSGPELCIWSLLSLRCG-TLVSAD-STG--SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD-- 242 (744)
Q Consensus 169 ~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~-~dg--~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~d-- 242 (744)
. .+........|+||| .|+..+ .+| .|.++|+..++. +.+..+...+....|+|||+.|+....+
T Consensus 286 t--------~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~ 356 (435)
T PRK05137 286 T--------DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGG 356 (435)
T ss_pred c--------CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCC
Confidence 4 344456678999999 565544 333 588888875544 4454445667778999999999876543
Q ss_pred -CeEEEEEcccC
Q 004581 243 -GQVILYKASCE 253 (744)
Q Consensus 243 -g~i~iw~~~~~ 253 (744)
..|.+|++.++
T Consensus 357 ~~~i~~~d~~~~ 368 (435)
T PRK05137 357 QFSIGVMKPDGS 368 (435)
T ss_pred ceEEEEEECCCC
Confidence 35777776543
No 245
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.47 E-value=9.7e-12 Score=121.85 Aligned_cols=211 Identities=16% Similarity=0.090 Sum_probs=157.6
Q ss_pred CCCCCCeeEEecCCCeEEEEEccCCceeEEeecc---CcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcC
Q 004581 1 MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSI---DFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHET 77 (744)
Q Consensus 1 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h---~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (744)
|.++..++|....||.+++||..++++...|... .+.-.+.+|. + .+.. . .+-+..
T Consensus 1 ~~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~-----L-~~~~-s-----~~k~~~--------- 59 (541)
T KOG4547|consen 1 SPPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG-----L-SADY-S-----PMKWLS--------- 59 (541)
T ss_pred CCchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE-----E-Eecc-c-----hHHHHh---------
Confidence 4567788999999999999999998888776532 2444455554 1 0000 0 000000
Q ss_pred ccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 004581 78 SESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSW 157 (744)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vw 157 (744)
..-......+-..++-|...|.|.+|++.. .++.....-.+|.+.|.++.++.+-..|.+++.|+.+..|
T Consensus 60 ---------~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~-g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~ 129 (541)
T KOG4547|consen 60 ---------LEKAKKASLDTSMLVLGTPQGSVLLYSVAG-GEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYI 129 (541)
T ss_pred ---------HHHHhhccCCceEEEeecCCccEEEEEecC-CeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEE
Confidence 000001112224888999999999999984 4554434446899999999999999999999999999999
Q ss_pred EccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCC----
Q 004581 158 DAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPS---- 232 (744)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~---- 232 (744)
+..+++.++... .....+.+++.+||+ .+++++ ++|++||+++++.+.++.+|.++|.++.|..+
T Consensus 130 ~~~~~~~~~~~~--------~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~ 199 (541)
T KOG4547|consen 130 LEKEKVIIRIWK--------EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGI 199 (541)
T ss_pred ecccceeeeeec--------cCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEecccc
Confidence 999999988887 577889999999999 777765 67999999999999999999999999999876
Q ss_pred -CCEEEee-cCCCeEEEEEccc
Q 004581 233 -HNRVFST-GSDGQVILYKASC 252 (744)
Q Consensus 233 -~~~l~~~-~~dg~i~iw~~~~ 252 (744)
|.+++++ ..+.-+.+|-...
T Consensus 200 ~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 200 IGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ccceeeeccccccceeEEEEEc
Confidence 6666654 4466677887665
No 246
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.47 E-value=5.3e-12 Score=113.94 Aligned_cols=133 Identities=19% Similarity=0.327 Sum_probs=97.5
Q ss_pred CeEEEEEecCCCceeEeeccc-CccCcEEEEEEecCCCEEEEE--eCCCeEEEEEccCCceEEEEEecCCCCCCCCceeE
Q 004581 107 GCVRIYRITDSDELIYHRSLP-RVSGRVLSVTWSADGNMLYSG--SSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCI 183 (744)
Q Consensus 107 g~i~iwd~~~~~~~~~~~~~~-~h~~~V~~~~~s~dg~~l~t~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v 183 (744)
+...||.+...+... ..+. ...++|.+++|+|+|+.||+. ..++.|.+||++ ++.+..+. ...+
T Consensus 37 ~~~~l~~~~~~~~~~--~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~----------~~~~ 103 (194)
T PF08662_consen 37 GEFELFYLNEKNIPV--ESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG----------TQPR 103 (194)
T ss_pred eeEEEEEEecCCCcc--ceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec----------CCCc
Confidence 345666664332222 2232 234579999999999987654 356799999996 66666653 3456
Q ss_pred EEEEEecCC-eEEEEcC---CCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecC------CCeEEEEEcccC
Q 004581 184 WSLLSLRCG-TLVSADS---TGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS------DGQVILYKASCE 253 (744)
Q Consensus 184 ~~~~~~~~~-~l~s~~~---dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~------dg~i~iw~~~~~ 253 (744)
..+.|+|+| +|++++. .|.|.+||.++.+.+..... ..++.++|+|||++|++++. |+.++||+....
T Consensus 104 n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 104 NTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred eEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 789999999 6776653 46799999998888877653 35789999999999998864 788999998764
Q ss_pred c
Q 004581 254 S 254 (744)
Q Consensus 254 ~ 254 (744)
.
T Consensus 182 ~ 182 (194)
T PF08662_consen 182 L 182 (194)
T ss_pred E
Confidence 4
No 247
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.47 E-value=1.4e-09 Score=103.55 Aligned_cols=148 Identities=12% Similarity=0.176 Sum_probs=108.0
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEE-cCC-ceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCc
Q 004581 413 VKSKASRKIICSTISNSGMLFAYS-DHV-KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRR 490 (744)
Q Consensus 413 ~~~~~~~~i~~~~~s~~g~~la~~-~~~-~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~ 490 (744)
++.++...|.-..+.-+++-++.+ .++ .+-+|+... + .. .........|.++..+|||++++++.....
T Consensus 354 iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~---~-e~-----kr~e~~lg~I~av~vs~dGK~~vvaNdr~e 424 (668)
T COG4946 354 IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG---G-EV-----KRIEKDLGNIEAVKVSPDGKKVVVANDRFE 424 (668)
T ss_pred EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCC---c-eE-----EEeeCCccceEEEEEcCCCcEEEEEcCceE
Confidence 445555667766677666666665 444 888998865 1 11 233445568999999999999999999999
Q ss_pred EEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCC----cEEEEECCCcceEEEEecCCCCce
Q 004581 491 IYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG----DVYIFNLEIQRQHWFISRLEGASV 566 (744)
Q Consensus 491 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg----~i~iwd~~~~~~~~~~~~~~~~~v 566 (744)
+.++|+++|.....=+. ..+-|+.+.|||+++++|.+--+| .|++||+.+++...... ..+.-
T Consensus 425 l~vididngnv~~idkS-----------~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT--~ta~D 491 (668)
T COG4946 425 LWVIDIDNGNVRLIDKS-----------EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT--PTAYD 491 (668)
T ss_pred EEEEEecCCCeeEeccc-----------ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC--Ccccc
Confidence 99999999875433332 467899999999999999987766 68999999987643321 12334
Q ss_pred eEEeecCCCCCeEEEEe
Q 004581 567 TAAGFPPQNNNVLIITT 583 (744)
Q Consensus 567 ~~l~~sp~~~~~l~~~~ 583 (744)
.+-+|.| |+++|..-+
T Consensus 492 fsPaFD~-d~ryLYfLs 507 (668)
T COG4946 492 FSPAFDP-DGRYLYFLS 507 (668)
T ss_pred cCcccCC-CCcEEEEEe
Confidence 5568999 999887654
No 248
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.47 E-value=2.3e-12 Score=117.16 Aligned_cols=233 Identities=19% Similarity=0.229 Sum_probs=168.4
Q ss_pred CCeeEEecCCCeEEEEEc-cCCceeEEee-ccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCC
Q 004581 5 GGRLFSSSIDGSVSEWDL-YDLKQKIVLQ-SIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEN 82 (744)
Q Consensus 5 ~~~l~~~~~d~~i~iwd~-~~~~~~~~~~-~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (744)
..-+++.+.|.++++|=- +.++.-..+. ....+++++.++++.
T Consensus 36 e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~----------------------------------- 80 (404)
T KOG1409|consen 36 EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES----------------------------------- 80 (404)
T ss_pred CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc-----------------------------------
Confidence 455899999999999943 3344333322 235778889998887
Q ss_pred CCCcccccccccccCCeEEEEecCCeEEEEEec-CCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 004581 83 DSDSDELHEQSVVEDRRVALACDDGCVRIYRIT-DSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL 161 (744)
Q Consensus 83 ~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~-~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~ 161 (744)
+.|.+|-+.|++.-+.+. .-+.+...+....|..+|..+-|+-.-+++++.+.|..+.---.+.
T Consensus 81 ---------------~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~ 145 (404)
T KOG1409|consen 81 ---------------RRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTES 145 (404)
T ss_pred ---------------eEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeecc
Confidence 689999999999999886 2234444477789999999999999999999999997766555555
Q ss_pred CceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeC--CCcceEEEeeccccceeEEEEcCCCCEEEee
Q 004581 162 GYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDS--RHGTLLQAHSFHKGDVNALAAAPSHNRVFST 239 (744)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~--~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~ 239 (744)
|..+..+...... ......+. ....|...|.|.+-.+ ..-.++.++.+|.+.+.+++|.+....|++|
T Consensus 146 ~~~lg~Y~~~~~~--t~~~~d~~--------~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg 215 (404)
T KOG1409|consen 146 GNRLGGYNFETPA--SALQFDAL--------YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSG 215 (404)
T ss_pred CCcccceEeeccC--CCCceeeE--------EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEec
Confidence 5554333211000 00111111 3445555666555433 3356788999999999999999999999999
Q ss_pred cCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccc
Q 004581 240 GSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHK 319 (744)
Q Consensus 240 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (744)
..|..+.+||+..... ....+.+|.+.|+.+... +..
T Consensus 216 ~~d~~vi~wdigg~~g----------------~~~el~gh~~kV~~l~~~---------~~t------------------ 252 (404)
T KOG1409|consen 216 ASDHSVIMWDIGGRKG----------------TAYELQGHNDKVQALSYA---------QHT------------------ 252 (404)
T ss_pred cccCceEEEeccCCcc----------------eeeeeccchhhhhhhhhh---------hhh------------------
Confidence 9999999999987652 245678999999998764 222
Q ss_pred cccCCCcEEEEecCCCeEEEEecCccC
Q 004581 320 WAHLGVPMLISAGDDTKLFAYCANEFT 346 (744)
Q Consensus 320 w~~~~~~~l~s~~~d~~i~~~~~~~~~ 346 (744)
..+++++.||.|.+|+++...
T Consensus 253 ------~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 253 ------RQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred ------eeeeeccCCCeEEEEecccee
Confidence 289999999999999998644
No 249
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1e-11 Score=128.47 Aligned_cols=175 Identities=17% Similarity=0.134 Sum_probs=115.5
Q ss_pred CeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCccccccccc
Q 004581 15 GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSV 94 (744)
Q Consensus 15 ~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (744)
..|.++|. +|...+.+..+...+.+.+|+|||+
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~---------------------------------------------- 208 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGT---------------------------------------------- 208 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCC----------------------------------------------
Confidence 46778886 4555556667788999999999994
Q ss_pred ccCCeEEEEec---CCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEE-EEeCCCeEEEEE--ccCCceEEEE
Q 004581 95 VEDRRVALACD---DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLY-SGSSDGYIRSWD--AKLGYEIYRI 168 (744)
Q Consensus 95 ~~~~~la~~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~-t~~~dg~i~vwd--~~~~~~~~~~ 168 (744)
.||..+. ...|.+||+.+++.. .+....+.+.+.+|+|||+.|+ +.+.++...||. +.++. ...+
T Consensus 209 ----~la~~s~~~~~~~I~~~dl~~g~~~----~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~l 279 (427)
T PRK02889 209 ----KLAYVSFESKKPVVYVHDLATGRRR----VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRL 279 (427)
T ss_pred ----EEEEEEccCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEEC
Confidence 5554443 346999999866542 2333345567899999999887 456677766665 44443 4444
Q ss_pred EecCCCCCCCCceeEEEEEEecCC-eEEEE-cCCCCEEEEeC--CCcceEEEeeccccceeEEEEcCCCCEEEeecCCC-
Q 004581 169 TVGLGGLGSGPELCIWSLLSLRCG-TLVSA-DSTGSVQFWDS--RHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG- 243 (744)
Q Consensus 169 ~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~-~~dg~i~vwd~--~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg- 243 (744)
. .+........|+||| .|+.. ..+|...+|.+ .+++ ...+..+.......+|+|||++|+..+.++
T Consensus 280 t--------~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g 350 (427)
T PRK02889 280 T--------QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA-AQRVTFTGSYNTSPRISPDGKLLAYISRVGG 350 (427)
T ss_pred C--------CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc-eEEEecCCCCcCceEECCCCCEEEEEEccCC
Confidence 3 233445667899999 55544 34566666654 4443 333333333445689999999998766544
Q ss_pred --eEEEEEcccCc
Q 004581 244 --QVILYKASCES 254 (744)
Q Consensus 244 --~i~iw~~~~~~ 254 (744)
.|.+||+.++.
T Consensus 351 ~~~I~v~d~~~g~ 363 (427)
T PRK02889 351 AFKLYVQDLATGQ 363 (427)
T ss_pred cEEEEEEECCCCC
Confidence 69999987755
No 250
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.45 E-value=2.6e-09 Score=103.80 Aligned_cols=268 Identities=14% Similarity=0.066 Sum_probs=169.4
Q ss_pred CeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eE-EEEc---------CCCCEEEEeCCCcceEEEeecc
Q 004581 152 GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TL-VSAD---------STGSVQFWDSRHGTLLQAHSFH 220 (744)
Q Consensus 152 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~s~~---------~dg~i~vwd~~~~~~~~~~~~h 220 (744)
++|.+.|..+++.+..+..+ ..... + ++||+ .| ++.+ .+..|.+||..+.+.+..+..-
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G-------~~P~~--~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p 96 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGG-------FLPNP--V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP 96 (352)
T ss_pred ceEEEEECCCCEEEEEEEcc-------CCCce--e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC
Confidence 79999999999999998853 22222 3 89999 44 4444 5788999999999999888742
Q ss_pred c-------cceeEEEEcCCCCEEEeec-C-CCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeecc
Q 004581 221 K-------GDVNALAAAPSHNRVFSTG-S-DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVP 291 (744)
Q Consensus 221 ~-------~~v~~l~~~~~~~~l~~~~-~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 291 (744)
. ..-..++++|||++|++.. . +..|.+.|+.++.. +.... .
T Consensus 97 ~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv-----------------v~ei~----------v--- 146 (352)
T TIGR02658 97 EGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF-----------------VRMMD----------V--- 146 (352)
T ss_pred CCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE-----------------EEEEe----------C---
Confidence 2 2234789999999999776 3 78999999998762 22221 1
Q ss_pred CCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEec--------CCCeEEEEecCccCCCCCcccCCCCCCCccc
Q 004581 292 ISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG--------DDTKLFAYCANEFTKFSPHEICPAPQRVPIH 363 (744)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~--------~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (744)
|++. .++..+ .||......+..
T Consensus 147 -------p~~~------------------------~vy~t~e~~~~~~~~Dg~~~~v~~d~------------------- 176 (352)
T TIGR02658 147 -------PDCY------------------------HIFPTANDTFFMHCRDGSLAKVGYGT------------------- 176 (352)
T ss_pred -------CCCc------------------------EEEEecCCccEEEeecCceEEEEecC-------------------
Confidence 2221 222222 233222222211
Q ss_pred cccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcC-CCCEEEEEcCCceE
Q 004581 364 LVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISN-SGMLFAYSDHVKPS 442 (744)
Q Consensus 364 ~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~la~~~~~~v~ 442 (744)
+|+.. . ....+++-.. . ... ..+ .+++ +|+++.++.++.|.
T Consensus 177 ---------~g~~~-~--~~~~vf~~~~------------------~---~v~-~rP----~~~~~dg~~~~vs~eG~V~ 218 (352)
T TIGR02658 177 ---------KGNPK-I--KPTEVFHPED------------------E---YLI-NHP----AYSNKSGRLVWPTYTGKIF 218 (352)
T ss_pred ---------CCceE-E--eeeeeecCCc------------------c---ccc-cCC----ceEcCCCcEEEEecCCeEE
Confidence 11100 0 0000110000 0 000 011 3455 88998888779999
Q ss_pred EEEeecCCC-CCceEEeeeccCC--c-ccccccEEEEeeCCCEEEEEe----------CCCcEEEEEccCCceeeeeccC
Q 004581 443 LFELKKGKV-GQGEWIINKRQLP--R-KLQFAHSMIFSYDSSQLIIAG----------HDRRIYVVDVSSSELLHTFTPC 508 (744)
Q Consensus 443 l~~~~~~~~-~~~~~~~~~~~~~--~-~~~~v~~i~~spd~~~l~~~~----------~dg~i~v~d~~~~~~~~~~~~~ 508 (744)
+.++..... ....|.+-..... + ......-++++||++++.+.. ..+.|.++|..+++.+..+..
T Consensus 219 ~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v- 297 (352)
T TIGR02658 219 QIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL- 297 (352)
T ss_pred EEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-
Confidence 999754211 1222322211100 0 111334499999999998853 125799999999999999885
Q ss_pred cccccccCCCCCCceEEEEECCCCC-EEEEEe-CCCcEEEEECCCcceEEEEe
Q 004581 509 REEHDREIQPSEPPITKMFTSSDGQ-WLAAVN-CFGDVYIFNLEIQRQHWFIS 559 (744)
Q Consensus 509 ~~~~~~~~~~~~~~i~~l~~spdg~-~las~~-~dg~i~iwd~~~~~~~~~~~ 559 (744)
...+..+++|||++ +|++.+ .++.|.++|..+++.+..+.
T Consensus 298 -----------G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 298 -----------GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred -----------CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 66899999999999 887776 57889999999999887773
No 251
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=3.7e-11 Score=124.33 Aligned_cols=174 Identities=17% Similarity=0.220 Sum_probs=111.2
Q ss_pred CeEEEEEcCCCCEEEE--EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeC-CCcEEEEEc
Q 004581 420 KIICSTISNSGMLFAY--SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DRRIYVVDV 496 (744)
Q Consensus 420 ~i~~~~~s~~g~~la~--~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~-dg~i~v~d~ 496 (744)
...+.+|+|||+.|+. +.++...+|.++...+. . ..+..+........|+|||++|+..+. +|...||.+
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~--~-----~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~ 313 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG--L-----RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRM 313 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCCC--c-----EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEE
Confidence 3456789999998875 35677778877642111 1 222223334567789999999887664 455566654
Q ss_pred --cCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCC---cEEEEECCCcceEEEEecCCCCceeEEee
Q 004581 497 --SSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG---DVYIFNLEIQRQHWFISRLEGASVTAAGF 571 (744)
Q Consensus 497 --~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~l~~ 571 (744)
.+++... +.. ........+|||||++||..+.++ .|++||+.+++...... ........|
T Consensus 314 ~~~~g~~~~-lt~-----------~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~---~~~~~~p~~ 378 (427)
T PRK02889 314 PASGGAAQR-VTF-----------TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD---TTRDESPSF 378 (427)
T ss_pred ECCCCceEE-Eec-----------CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC---CCCccCceE
Confidence 4444322 221 122344678999999999877654 69999999887543322 123467899
Q ss_pred cCCCCCeEEEEecCC---eEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCC
Q 004581 572 PPQNNNVLIITTSSN---QVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 628 (744)
Q Consensus 572 sp~~~~~l~~~~~d~---~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspd 628 (744)
+| |+++|+.++.++ .+++.++.++. ...+..+.+.+...+|+|-
T Consensus 379 sp-dg~~l~~~~~~~g~~~l~~~~~~g~~------------~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 379 AP-NGRYILYATQQGGRSVLAAVSSDGRI------------KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CC-CCCEEEEEEecCCCEEEEEEECCCCc------------eEEeecCCCCCCCCccCCC
Confidence 99 999988887655 46666664432 2234345567777888873
No 252
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=6.1e-11 Score=123.50 Aligned_cols=172 Identities=16% Similarity=0.253 Sum_probs=109.4
Q ss_pred CeEEEEEcCCCCEEEEE--cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeC-CC--cEEEE
Q 004581 420 KIICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DR--RIYVV 494 (744)
Q Consensus 420 ~i~~~~~s~~g~~la~~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~-dg--~i~v~ 494 (744)
.+.+.+|+|||+.|++. .++...||.++... + .. ..+..+........|+|||++|+..+. +| .|+++
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~-~-~~-----~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~ 319 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS-G-TT-----TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVM 319 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCC-C-ce-----EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEE
Confidence 44567899999887653 44444444443211 1 11 223333334567899999999988764 33 68888
Q ss_pred EccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCC---CcEEEEECCCcceEEEEecCCCCceeEEee
Q 004581 495 DVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF---GDVYIFNLEIQRQHWFISRLEGASVTAAGF 571 (744)
Q Consensus 495 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~ 571 (744)
|+.+++.. .+.. +...+....|||||++|+..+.+ ..|.+||++++... .+.. ...+....|
T Consensus 320 d~~g~~~~-~lt~-----------~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~--~~~~~~p~~ 384 (435)
T PRK05137 320 NADGSNPR-RISF-----------GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTS--GFLVEGPTW 384 (435)
T ss_pred ECCCCCeE-Eeec-----------CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-eccC--CCCCCCCeE
Confidence 88766543 3332 34456778999999999887653 36888998766543 3322 234678899
Q ss_pred cCCCCCeEEEEecC------CeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCC
Q 004581 572 PPQNNNVLIITTSS------NQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSP 627 (744)
Q Consensus 572 sp~~~~~l~~~~~d------~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fsp 627 (744)
+| |+++|+..+.+ ..++++|+.++... .+. ..+.+...+|+|
T Consensus 385 sp-DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~------------~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 385 AP-NGRVIMFFRQTPGSGGAPKLYTVDLTGRNER------------EVP-TPGDASDPAWSP 432 (435)
T ss_pred CC-CCCEEEEEEccCCCCCcceEEEEECCCCceE------------Ecc-CCCCccCcccCC
Confidence 99 99998876653 26888888776531 122 234466677776
No 253
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=1.7e-11 Score=127.48 Aligned_cols=188 Identities=17% Similarity=0.160 Sum_probs=125.6
Q ss_pred CCCCCCeeEEecC---CCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcC
Q 004581 1 MGLPGGRLFSSSI---DGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHET 77 (744)
Q Consensus 1 ~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (744)
|+|+|.+|+..+. +..|.+||+.+++... +..+.+...+++|+|||+.+
T Consensus 211 wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l--------------------------- 262 (433)
T PRK04922 211 WSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRL--------------------------- 262 (433)
T ss_pred CCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEE---------------------------
Confidence 6788888887763 3579999998877644 33445556689999999533
Q ss_pred ccCCCCCCcccccccccccCCeEEEEecCC--eEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeC-CCe-
Q 004581 78 SESENDSDSDELHEQSVVEDRRVALACDDG--CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-DGY- 153 (744)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~la~~~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~-dg~- 153 (744)
+++.+.+| .|++||+.+++. +.+..|......++|+|||+.|+.++. +|.
T Consensus 263 ----------------------~~~~s~~g~~~Iy~~d~~~g~~----~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~ 316 (433)
T PRK04922 263 ----------------------ALTLSRDGNPEIYVMDLGSRQL----TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRP 316 (433)
T ss_pred ----------------------EEEEeCCCCceEEEEECCCCCe----EECccCCCCccceEECCCCCEEEEEECCCCCc
Confidence 22334444 699999976543 445566666678999999999887764 444
Q ss_pred -EEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCC---CEEEEeCCCcceEEEeeccccceeEEE
Q 004581 154 -IRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTG---SVQFWDSRHGTLLQAHSFHKGDVNALA 228 (744)
Q Consensus 154 -i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg---~i~vwd~~~~~~~~~~~~h~~~v~~l~ 228 (744)
|.++|+.+++.. .+.. .......++|+||| .|+..+.++ .|.+||+.+++.. .+. +........
T Consensus 317 ~iy~~dl~~g~~~-~lt~--------~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~ 385 (433)
T PRK04922 317 QIYRVAASGGSAE-RLTF--------QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPS 385 (433)
T ss_pred eEEEEECCCCCeE-Eeec--------CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCce
Confidence 777777776543 3331 22233468999999 665544332 5999999887655 343 223455679
Q ss_pred EcCCCCEEEeecCC---CeEEEEEcccC
Q 004581 229 AAPSHNRVFSTGSD---GQVILYKASCE 253 (744)
Q Consensus 229 ~~~~~~~l~~~~~d---g~i~iw~~~~~ 253 (744)
|+|||++|+..+.+ +.+.+++....
T Consensus 386 ~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 386 FAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred ECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 99999988776553 35667776543
No 254
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=1.2e-11 Score=114.63 Aligned_cols=194 Identities=16% Similarity=0.198 Sum_probs=152.1
Q ss_pred CCCCeeEEecCCCeEEEEEccCC----ceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCc
Q 004581 3 LPGGRLFSSSIDGSVSEWDLYDL----KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETS 78 (744)
Q Consensus 3 ~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (744)
..++.|++|-.+|.+.+|..+.+ ..+..+..+ ..+..|.-+|...
T Consensus 113 ~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p------------------------------ 161 (412)
T KOG3881|consen 113 LADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDP------------------------------ 161 (412)
T ss_pred hcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCC------------------------------
Confidence 45788999999999999998843 233344432 4455555555443
Q ss_pred cCCCCCCcccccccccccCCeEEEEecC--CeEEEEEecCCCceeEeecccC------ccCcEEEEEEecC--CCEEEEE
Q 004581 79 ESENDSDSDELHEQSVVEDRRVALACDD--GCVRIYRITDSDELIYHRSLPR------VSGRVLSVTWSAD--GNMLYSG 148 (744)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~la~~~~d--g~i~iwd~~~~~~~~~~~~~~~------h~~~V~~~~~s~d--g~~l~t~ 148 (744)
..+|+|+.. ..+.|||++..+++...+.... -.-.++++.|-+. ...||++
T Consensus 162 -------------------~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~ 222 (412)
T KOG3881|consen 162 -------------------YIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATI 222 (412)
T ss_pred -------------------ceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEE
Confidence 367789998 8999999986644322222211 1225788999887 7899999
Q ss_pred eCCCeEEEEEccCCc-eEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEE-eecccccee
Q 004581 149 SSDGYIRSWDAKLGY-EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQA-HSFHKGDVN 225 (744)
Q Consensus 149 ~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~-~~~h~~~v~ 225 (744)
+.-+.+|+||...++ ++..+. -.+..+.++...|++ .+++|...|.+..+|++.+..+.. +.+-.+.|.
T Consensus 223 T~~hqvR~YDt~~qRRPV~~fd--------~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsir 294 (412)
T KOG3881|consen 223 TRYHQVRLYDTRHQRRPVAQFD--------FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIR 294 (412)
T ss_pred ecceeEEEecCcccCcceeEec--------cccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcc
Confidence 999999999998775 455555 367889999999999 899999999999999999988866 889999999
Q ss_pred EEEEcCCCCEEEeecCCCeEEEEEcccCc
Q 004581 226 ALAAAPSHNRVFSTGSDGQVILYKASCES 254 (744)
Q Consensus 226 ~l~~~~~~~~l~~~~~dg~i~iw~~~~~~ 254 (744)
++..+|.+.+++++|.|..|+|+|+.+..
T Consensus 295 sih~hp~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 295 SIHCHPTHPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred eEEEcCCCceEEeeccceeEEEeecccch
Confidence 99999999999999999999999999854
No 255
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=3.1e-10 Score=114.49 Aligned_cols=421 Identities=14% Similarity=0.101 Sum_probs=249.0
Q ss_pred eEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecC------------CCEEEEEeCCCeEEEEEccCCceEE
Q 004581 99 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSAD------------GNMLYSGSSDGYIRSWDAKLGYEIY 166 (744)
Q Consensus 99 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~d------------g~~l~t~~~dg~i~vwd~~~~~~~~ 166 (744)
++|.|+. ..|.+-|..+-+.+ +.+..|...|+.+.|.|. .-.||++...|.|.+||...+..+.
T Consensus 28 LiAygsh-slV~VVDs~s~q~i---qsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~ 103 (1062)
T KOG1912|consen 28 LIAYGSH-SLVSVVDSRSLQLI---QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN 103 (1062)
T ss_pred eEEEecC-ceEEEEehhhhhhh---hccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh
Confidence 8888887 57888887755555 888999999999999873 1257778888999999999998888
Q ss_pred EEEecCCCCCCCCceeEEEEEEecCC-----eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcC-CCCEEEeec
Q 004581 167 RITVGLGGLGSGPELCIWSLLSLRCG-----TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAP-SHNRVFSTG 240 (744)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~~~~~~~~~-----~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~~~~ 240 (744)
.+. .+...+..++|.+.. .|++-.....|.+|+..+|+.+...........|+.+.| |.+.+..-+
T Consensus 104 ~l~--------~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~ 175 (1062)
T KOG1912|consen 104 WLS--------HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLG 175 (1062)
T ss_pred hhc--------CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEc
Confidence 887 577888888887643 567777788999999999999988887777788899998 567777777
Q ss_pred CCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcccccccc
Q 004581 241 SDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKW 320 (744)
Q Consensus 241 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 320 (744)
..|.+.+-+.-...... .+..-+.+..+.+.. +..+
T Consensus 176 s~g~vl~~~~l~~sep~-----------------------~pgk~~qI~sd~Sdl---~~le------------------ 211 (1062)
T KOG1912|consen 176 SKGFVLSCKDLGLSEPD-----------------------VPGKEFQITSDHSDL---AHLE------------------ 211 (1062)
T ss_pred cCceEEEEeccCCCCCC-----------------------CCceeEEEecCccch---hhhh------------------
Confidence 88888777655432100 011111111000000 0000
Q ss_pred ccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCC--eEEEEEeCCeEEEEEeeccCCcccC
Q 004581 321 AHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHT--SLLLVQYSCRLDILSVRLENNVESR 398 (744)
Q Consensus 321 ~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~~i~i~~~~~~~~~~~~ 398 (744)
.-.+++ +..+.. .+..........++|+|. ..++++....+.++++....
T Consensus 212 -----re~at~---------ns~ts~---------~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~----- 263 (1062)
T KOG1912|consen 212 -----RETATG---------NSTTST---------PASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYEC----- 263 (1062)
T ss_pred -----hhhhcc---------ccccCC---------CcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhc-----
Confidence 011111 000000 000001122335667774 45777888899999888665
Q ss_pred CCCCCCCCcceEEEEEecCCCCeEEEEEcCCC--CEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCccc-cccc---
Q 004581 399 SSSGGHASTSLLVQVKSKASRKIICSTISNSG--MLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKL-QFAH--- 471 (744)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~-~~v~--- 471 (744)
++..+..+. ..+.-+.+-|++ ..|.+ -.+|.+.+|.........+ .....+.... ..+.
T Consensus 264 ----------~l~vvpier-~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~---~~~~~l~~dl~~Q~~~vr 329 (1062)
T KOG1912|consen 264 ----------CLAVVPIER-GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFK---KPNASLSMDLGEQVHVVR 329 (1062)
T ss_pred ----------eeEEEEecc-CCcceeEeccCCCcceEEEEecCCeEEEEEeeccCcccc---ccchhhccccccceEEEe
Confidence 444444332 334445566666 34544 5899999887764111111 1111111100 0111
Q ss_pred --------EEEEeeC-CCEEEEEeCCCcEEEEEccCCceeeeeccCc-c-------------------cccccCCCCCCc
Q 004581 472 --------SMIFSYD-SSQLIIAGHDRRIYVVDVSSSELLHTFTPCR-E-------------------EHDREIQPSEPP 522 (744)
Q Consensus 472 --------~i~~spd-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~-------------------~~~~~~~~~~~~ 522 (744)
..+--|. ...++.--.+|.+.+|.+.+|+.-....... + ..-.....|...
T Consensus 330 ~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sG 409 (1062)
T KOG1912|consen 330 PMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSG 409 (1062)
T ss_pred echhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCC
Confidence 1122233 3344444567788889887654321111000 0 000112345555
Q ss_pred eEEEEECC-----------CCC-------EEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEec
Q 004581 523 ITKMFTSS-----------DGQ-------WLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTS 584 (744)
Q Consensus 523 i~~l~~sp-----------dg~-------~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~ 584 (744)
.++....| -|+ ++|.|...|+|.++|+.++.....+. .|.+.|.++.|.. . ..|++.+.
T Consensus 410 s~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fs-vht~~VkgleW~g-~-sslvSfsy 486 (1062)
T KOG1912|consen 410 STCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFS-VHTSLVKGLEWLG-N-SSLVSFSY 486 (1062)
T ss_pred ceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhc-ccccceeeeeecc-c-eeEEEeee
Confidence 55444332 232 67889999999999999998777664 4778999999975 3 33444432
Q ss_pred ----------CCeEEEEEcCCCccccccccccCCccccccc-CCCceEEEEeCCCC
Q 004581 585 ----------SNQVYVFDVEAKQLGEWSMQHTFVLPRRYQE-FPGEVIGLSFSPSP 629 (744)
Q Consensus 585 ----------d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~-~~~~v~~i~fspdg 629 (744)
-+.+.+=|+.+|.-.. .+.+++ ...+|..|..|..|
T Consensus 487 s~~n~~sg~vrN~l~vtdLrtGlsk~---------fR~l~~~despI~~irvS~~~ 533 (1062)
T KOG1912|consen 487 SHVNSASGGVRNDLVVTDLRTGLSKR---------FRGLQKPDESPIRAIRVSSSG 533 (1062)
T ss_pred ccccccccceeeeEEEEEcccccccc---------cccCCCCCcCcceeeeecccC
Confidence 2467888999885321 111111 23677888877764
No 256
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=1e-10 Score=113.88 Aligned_cols=170 Identities=12% Similarity=0.121 Sum_probs=124.5
Q ss_pred CCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCCCCceEEeeec----cCCcccccccEEEEeeCCCEEEEEeCCCcEEE
Q 004581 419 RKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKR----QLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYV 493 (744)
Q Consensus 419 ~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v 493 (744)
..+.++.+++...+|++| .++.|..||... .......+.... ........|+++.|+.||-.+++|+.+|.|.|
T Consensus 176 ~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~-ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~i 254 (703)
T KOG2321|consen 176 GELNVVSINEEHGLLACGTEDGVVEFWDPRD-KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLI 254 (703)
T ss_pred ccceeeeecCccceEEecccCceEEEecchh-hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEE
Confidence 557778888888899997 589999999876 222333233221 11112236999999999999999999999999
Q ss_pred EEccCCceeeeeccCcccccccCCCCCCceEEEEECCC--CCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEee
Q 004581 494 VDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSD--GQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGF 571 (744)
Q Consensus 494 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd--g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~ 571 (744)
||+.+.+++..-... ..-+|..+.|-+. ++.+++. ....++|||-.+++....+... ..+..+++
T Consensus 255 yDLRa~~pl~~kdh~----------~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt--~~lND~C~ 321 (703)
T KOG2321|consen 255 YDLRASKPLLVKDHG----------YELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPT--SDLNDFCF 321 (703)
T ss_pred EEcccCCceeecccC----------CccceeeecccccCCCceEEec-chHHhhhcccccCCceeecccc--CCcCceee
Confidence 999877766543321 4678999999775 4455555 3457999999999987777543 46999999
Q ss_pred cCCCCCeEEEEecCCeEEEEEcC-CCccccccc
Q 004581 572 PPQNNNVLIITTSSNQVYVFDVE-AKQLGEWSM 603 (744)
Q Consensus 572 sp~~~~~l~~~~~d~~v~vwd~~-~~~~~~ws~ 603 (744)
-| ++.++++|..+..+..|=+. -|....|..
T Consensus 322 ~p-~sGm~f~Ane~~~m~~yyiP~LGPaPrWCS 353 (703)
T KOG2321|consen 322 VP-GSGMFFTANESSKMHTYYIPSLGPAPRWCS 353 (703)
T ss_pred ec-CCceEEEecCCCcceeEEccccCCCchhhh
Confidence 99 88999999998877776654 455555654
No 257
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=8.6e-10 Score=107.09 Aligned_cols=352 Identities=14% Similarity=0.177 Sum_probs=190.9
Q ss_pred CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeC-----------CCeEEEEEccCCceEE
Q 004581 98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-----------DGYIRSWDAKLGYEIY 166 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~-----------dg~i~vwd~~~~~~~~ 166 (744)
.+|++--..| |.+|- |+.....+.|. |. .|.-+.|||..++|+|-+. ...++|||+.+|...+
T Consensus 223 TYL~t~Hk~G-I~lWG---G~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkr 296 (698)
T KOG2314|consen 223 TYLVTFHKQG-IALWG---GESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKR 296 (698)
T ss_pred eEEEEEeccc-eeeec---CccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhc
Confidence 5666666544 77885 33332224443 54 5889999999999999653 2579999999999998
Q ss_pred EEEecCCCCCCCCceeEEE-EEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeE
Q 004581 167 RITVGLGGLGSGPELCIWS-LLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQV 245 (744)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~~-~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i 245 (744)
.+... .....+|. ..||-|+.+++.-....|.|++..+..++..-......|....|+|.++.|+
T Consensus 297 sF~~~------~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llA-------- 362 (698)
T KOG2314|consen 297 SFPVI------KSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLA-------- 362 (698)
T ss_pred ceecc------CCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEE--------
Confidence 88753 13334443 4788888444444447799999887555433333456788899999865544
Q ss_pred EEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCC
Q 004581 246 ILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGV 325 (744)
Q Consensus 246 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 325 (744)
.|...+..... .+.-+.+ |..+.++..+.-..... ...| ..++
T Consensus 363 -Ywtpe~~~~pa------------------------rvtL~ev----------Ps~~~iRt~nlfnVsDc-kLhW-Qk~g 405 (698)
T KOG2314|consen 363 -YWTPETNNIPA------------------------RVTLMEV----------PSKREIRTKNLFNVSDC-KLHW-QKSG 405 (698)
T ss_pred -EEcccccCCcc------------------------eEEEEec----------Cccceeeeccceeeecc-EEEe-ccCC
Confidence 44433322100 0011111 11110000000000000 0000 0011
Q ss_pred cEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCC
Q 004581 326 PMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHA 405 (744)
Q Consensus 326 ~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 405 (744)
++| ++.-.+..+ +. +-..-..+.|++++..+..
T Consensus 406 dyL---------cvkvdR~tK---------------------------~~-~~g~f~n~eIfrireKdIp---------- 438 (698)
T KOG2314|consen 406 DYL---------CVKVDRHTK---------------------------SK-VKGQFSNLEIFRIREKDIP---------- 438 (698)
T ss_pred cEE---------EEEEEeecc---------------------------cc-ccceEeeEEEEEeeccCCC----------
Confidence 111 111111000 00 0000025667777654422
Q ss_pred CcceEEEEEecCCCCeEEEEEcCCCCEEEE--E--cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCE
Q 004581 406 STSLLVQVKSKASRKIICSTISNSGMLFAY--S--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQ 481 (744)
Q Consensus 406 ~~~~~~~~~~~~~~~i~~~~~s~~g~~la~--~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~ 481 (744)
+..+.. ...+...+|-|.|..+++ + ...++++|.+........+ - ..+.. ...+.+.|+|.|++
T Consensus 439 ----ve~vel--ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l---V-k~~dk--~~~N~vfwsPkG~f 506 (698)
T KOG2314|consen 439 ----VEVVEL--KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL---V-KELDK--KFANTVFWSPKGRF 506 (698)
T ss_pred ----ceeeec--chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh---h-hhhcc--cccceEEEcCCCcE
Confidence 222222 377899999999977766 3 4457888888742222221 1 12222 36789999999999
Q ss_pred EEEE---eCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCC------cEEEEECCCc
Q 004581 482 LIIA---GHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG------DVYIFNLEIQ 552 (744)
Q Consensus 482 l~~~---~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg------~i~iwd~~~~ 552 (744)
++++ +..|.+..+|+.-..+..+-.. .....+.+.|.|.|+|+++++... --+||++.+.
T Consensus 507 vvva~l~s~~g~l~F~D~~~a~~k~~~~~-----------eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 507 VVVAALVSRRGDLEFYDTDYADLKDTASP-----------EHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred EEEEEecccccceEEEecchhhhhhccCc-----------cccccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 9877 4578999999874333222222 234567899999999999987543 3445555443
Q ss_pred ceEEEEecCCCCceeEEeecCCCCCeEEE
Q 004581 553 RQHWFISRLEGASVTAAGFPPQNNNVLII 581 (744)
Q Consensus 553 ~~~~~~~~~~~~~v~~l~~sp~~~~~l~~ 581 (744)
.....+. .....+.|-| ....+++
T Consensus 576 ll~~~~i----~~f~qF~WRP-RPps~LS 599 (698)
T KOG2314|consen 576 LLKEDII----DRFKQFLWRP-RPPSLLS 599 (698)
T ss_pred HHHHHHH----HHHHhhccCC-CCCcccC
Confidence 2211110 2333456666 5554444
No 258
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.41 E-value=7.4e-10 Score=113.72 Aligned_cols=310 Identities=17% Similarity=0.201 Sum_probs=184.0
Q ss_pred CCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccc
Q 004581 142 GNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHK 221 (744)
Q Consensus 142 g~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~ 221 (744)
+..+++++.++.|..+|..+|+.+........ .. ..... .++.++.++.++.+..+|..+|+.+.......
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~-----~~---~~p~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 135 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDER-----LS---GGVGA-DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS 135 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCC-----cc---cceEE-cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc
Confidence 66888888999999999999999988764211 11 11111 25588889999999999999999887765432
Q ss_pred cceeE-EEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeee-eeccCCCCCCCC
Q 004581 222 GDVNA-LAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALT-VAVPISREDPLP 299 (744)
Q Consensus 222 ~~v~~-l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-~~~~~~~~~~~~ 299 (744)
.+.+ ... .+..++.++.+|.+..||..+++ ..|... ... ....+. .+. |
T Consensus 136 -~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~-------------~~W~~~----~~~-~~~~~~~~~s--------p 186 (377)
T TIGR03300 136 -EVLSPPLV--ANGLVVVRTNDGRLTALDAATGE-------------RLWTYS----RVT-PALTLRGSAS--------P 186 (377)
T ss_pred -eeecCCEE--ECCEEEEECCCCeEEEEEcCCCc-------------eeeEEc----cCC-CceeecCCCC--------C
Confidence 2222 122 24578888889999999998876 233321 111 000000 000 0
Q ss_pred cccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEE
Q 004581 300 EDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ 379 (744)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 379 (744)
- . .+..++.+..++.+..+|..+....
T Consensus 187 ~---------------------~-~~~~v~~~~~~g~v~ald~~tG~~~------------------------------- 213 (377)
T TIGR03300 187 V---------------------I-ADGGVLVGFAGGKLVALDLQTGQPL------------------------------- 213 (377)
T ss_pred E---------------------E-ECCEEEEECCCCEEEEEEccCCCEe-------------------------------
Confidence 0 0 0125677777888888887654322
Q ss_pred eCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEee
Q 004581 380 YSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIIN 459 (744)
Q Consensus 380 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~ 459 (744)
|........ +.. ....+......+ .+ .++..++.+.++.+..|+..+ +..+|...
T Consensus 214 -------W~~~~~~~~-------g~~---~~~~~~~~~~~p----~~-~~~~vy~~~~~g~l~a~d~~t---G~~~W~~~ 268 (377)
T TIGR03300 214 -------WEQRVALPK-------GRT---ELERLVDVDGDP----VV-DGGQVYAVSYQGRVAALDLRS---GRVLWKRD 268 (377)
T ss_pred -------eeeccccCC-------CCC---chhhhhccCCcc----EE-ECCEEEEEEcCCEEEEEECCC---CcEEEeec
Confidence 211110000 000 000000000001 11 134445556788888888865 55677654
Q ss_pred eccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEe
Q 004581 460 KRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN 539 (744)
Q Consensus 460 ~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~ 539 (744)
. . ..... ..++..+++++.+|.++.+|..+|+.+...... ......+... .+..|++++
T Consensus 269 ~---~----~~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~----------~~~~~ssp~i--~g~~l~~~~ 327 (377)
T TIGR03300 269 A---S----SYQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDEL----------KYRQLTAPAV--VGGYLVVGD 327 (377)
T ss_pred c---C----CccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEccccc----------cCCccccCEE--ECCEEEEEe
Confidence 2 1 11122 235678888889999999999999877655321 1111222222 466889999
Q ss_pred CCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEE
Q 004581 540 CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVF 591 (744)
Q Consensus 540 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vw 591 (744)
.+|.|+++|.++++.++.++........+.++. + +.|++++.||.|+.|
T Consensus 328 ~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~--~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 328 FEGYLHWLSREDGSFVARLKTDGSGIASPPVVV--G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CCCEEEEEECCCCCEEEEEEcCCCccccCCEEE--C-CEEEEEeCCceEEEe
Confidence 999999999999999888865332122333443 3 458899999998876
No 259
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.40 E-value=9.9e-08 Score=106.35 Aligned_cols=418 Identities=13% Similarity=0.144 Sum_probs=237.1
Q ss_pred CcccccccccccCCeEEEEecCCeEEEE----EecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 004581 85 DSDELHEQSVVEDRRVALACDDGCVRIY----RITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAK 160 (744)
Q Consensus 85 ~~~~~~~~~~~~~~~la~~~~dg~i~iw----d~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~ 160 (744)
.+..+....+.+...++.+..+|.|.+. +.. ...+ .....-...|.+++||||+..|+..+.++++.+-+-
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~-~~~~---E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~- 149 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPD-EDEI---EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR- 149 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCC-Ccee---EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-
Confidence 3444555555666789999999999999 443 2233 222334678999999999999999999988887652
Q ss_pred CCceEEEEEec------------------------CCC-----------------CCCCCceeEEEEEEecCC-eEEEEc
Q 004581 161 LGYEIYRITVG------------------------LGG-----------------LGSGPELCIWSLLSLRCG-TLVSAD 198 (744)
Q Consensus 161 ~~~~~~~~~~~------------------------~~~-----------------~~~~~~~~v~~~~~~~~~-~l~s~~ 198 (744)
+...+...... .+. ... ....-..++|-.|| ++++.+
T Consensus 150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss 228 (928)
T PF04762_consen 150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSS 228 (928)
T ss_pred cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEE
Confidence 22222211110 000 001 33355678999999 666554
Q ss_pred C---C---CCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecC---CCeEEEEEcccCcCCCCCCCCcccccce
Q 004581 199 S---T---GSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS---DGQVILYKASCESIGPNDGLSSSEVIKK 269 (744)
Q Consensus 199 ~---d---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 269 (744)
- . ..++||+-+ |.+..+-..-.+--.+++|.|.|++|++.-. ...|.+|..++-.-+ .
T Consensus 229 ~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhg------------e 295 (928)
T PF04762_consen 229 VEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHG------------E 295 (928)
T ss_pred EEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEee------------e
Confidence 3 2 569999976 7655544433344467899999999988654 456777776553310 0
Q ss_pred EEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCC
Q 004581 270 WIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFS 349 (744)
Q Consensus 270 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~ 349 (744)
+ .-.+......|..++|+ +|+. .|+..-.|. |.+|-..+..-+-
T Consensus 296 F--~l~~~~~~~~v~~l~Wn---------~ds~------------------------iLAv~~~~~-vqLWt~~NYHWYL 339 (928)
T PF04762_consen 296 F--TLRFDPEEEKVIELAWN---------SDSE------------------------ILAVWLEDR-VQLWTRSNYHWYL 339 (928)
T ss_pred E--ecCCCCCCceeeEEEEC---------CCCC------------------------EEEEEecCC-ceEEEeeCCEEEE
Confidence 0 11112345678899997 5554 777766554 9999887643221
Q ss_pred CcccCCCCCCCccccccceeecCCe---EEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEE
Q 004581 350 PHEICPAPQRVPIHLVHNTIFSHTS---LLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTI 426 (744)
Q Consensus 350 ~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 426 (744)
...... + ....+..+.|+|.. ..+.+.++.+..+++...... . -..
T Consensus 340 Kqei~~-~---~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~--------------------s-------~~~ 388 (928)
T PF04762_consen 340 KQEIRF-S---SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSR--------------------S-------PGS 388 (928)
T ss_pred EEEEEc-c---CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEe--------------------c-------CCC
Confidence 111100 0 00122236777632 334444455554443321100 0 001
Q ss_pred cC-CCCEEEEEcCCceEEEEeecCCC--CCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCcee-
Q 004581 427 SN-SGMLFAYSDHVKPSLFELKKGKV--GQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELL- 502 (744)
Q Consensus 427 s~-~g~~la~~~~~~v~l~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~- 502 (744)
+| |...+++-+...+.+-.+....- ....+ ...+ ...|.+++|++++..+++-..||.|.+|........
T Consensus 389 ~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~---~l~~---~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~ 462 (928)
T PF04762_consen 389 SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSY---ELEL---PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWS 462 (928)
T ss_pred CccCceEEEEEeCCeEEEecccccCCCchHhce---EEcC---CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCccc
Confidence 12 22334445555666655543100 11111 1112 238999999999999999999999999996533211
Q ss_pred -------eeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCC---CcEEEEECCCcceE---EEEecCCCCceeEE
Q 004581 503 -------HTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF---GDVYIFNLEIQRQH---WFISRLEGASVTAA 569 (744)
Q Consensus 503 -------~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~d---g~i~iwd~~~~~~~---~~~~~~~~~~v~~l 569 (744)
..+... .............+..++|..+...++..+.+ ..+.++++...+.. ..... -...+..+
T Consensus 463 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 540 (928)
T PF04762_consen 463 VKPPKLLSSISLD-SMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTE-VDGVVLII 540 (928)
T ss_pred ccCcchhhhcccc-cccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEec-cCceEEEE
Confidence 111100 00000011134567888998888877776664 67888888543321 12222 12456666
Q ss_pred eecCCCCCeEEEEecCCeEEEEEcCCCc
Q 004581 570 GFPPQNNNVLIITTSSNQVYVFDVEAKQ 597 (744)
Q Consensus 570 ~~sp~~~~~l~~~~~d~~v~vwd~~~~~ 597 (744)
...+ +...++.-..+|++...+.....
T Consensus 541 ~~~~-~~~~~~~q~~~G~v~~~~~~~~~ 567 (928)
T PF04762_consen 541 SSSP-DSGSLYIQTNDGKVFQLSSDGEL 567 (928)
T ss_pred eeCC-CCcEEEEEECCCEEEEeecCCCc
Confidence 6665 44457788889999877766553
No 260
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=3.2e-09 Score=98.61 Aligned_cols=304 Identities=13% Similarity=0.118 Sum_probs=185.5
Q ss_pred CCCEEEEeCCC--cceE-EEeeccccceeEEEEcCCCCEEEeecC---CCeEEEEEcccCcCCCCCCCCcccccceEEEE
Q 004581 200 TGSVQFWDSRH--GTLL-QAHSFHKGDVNALAAAPSHNRVFSTGS---DGQVILYKASCESIGPNDGLSSSEVIKKWIYV 273 (744)
Q Consensus 200 dg~i~vwd~~~--~~~~-~~~~~h~~~v~~l~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (744)
+.-|.+|++.+ |+.- ..+-.+.+..+-|+|+|++++|+++.. +|.|..|.++...- ....+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G-------------~Lt~l 81 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDG-------------RLTFL 81 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCC-------------eEEEe
Confidence 56699999874 2221 222345778899999999999998754 57888888876310 01111
Q ss_pred eeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEec-CCCeEEEEecCccCCCCCc-
Q 004581 274 GSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG-DDTKLFAYCANEFTKFSPH- 351 (744)
Q Consensus 274 ~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~-~d~~i~~~~~~~~~~~~~~- 351 (744)
.........-..++++ ++++ +++++. ..|.|.++.+.....+...
T Consensus 82 n~~~~~g~~p~yvsvd---------~~g~------------------------~vf~AnY~~g~v~v~p~~~dG~l~~~v 128 (346)
T COG2706 82 NRQTLPGSPPCYVSVD---------EDGR------------------------FVFVANYHSGSVSVYPLQADGSLQPVV 128 (346)
T ss_pred eccccCCCCCeEEEEC---------CCCC------------------------EEEEEEccCceEEEEEcccCCccccce
Confidence 1111122222556664 4443 666655 4568999998764433222
Q ss_pred -----ccCCCCCCCccccccceeecCCeEEEEEeC---CeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEE
Q 004581 352 -----EICPAPQRVPIHLVHNTIFSHTSLLLVQYS---CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIIC 423 (744)
Q Consensus 352 -----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 423 (744)
.......+.....+....+.|++++++..+ ..+.+|++..+... .......+.....+.
T Consensus 129 ~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~-------------~~~~~~v~~G~GPRH 195 (346)
T COG2706 129 QVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLT-------------PADPAEVKPGAGPRH 195 (346)
T ss_pred eeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccc-------------cccccccCCCCCcce
Confidence 111111222233477888999998887654 48888888844322 122222345577889
Q ss_pred EEEcCCCCEEEE--EcCCceEEEEeecCCCCCceEEeee-ccCCccc---ccccEEEEeeCCCEEEEEeC-CCcEEEEEc
Q 004581 424 STISNSGMLFAY--SDHVKPSLFELKKGKVGQGEWIINK-RQLPRKL---QFAHSMIFSYDSSQLIIAGH-DRRIYVVDV 496 (744)
Q Consensus 424 ~~~s~~g~~la~--~~~~~v~l~~~~~~~~~~~~~~~~~-~~~~~~~---~~v~~i~~spd~~~l~~~~~-dg~i~v~d~ 496 (744)
++|+|++++..+ --+++|-+|..+.. ..++-.++. ..++... ....+|.+++||++|.+... ...|.+|.+
T Consensus 196 i~FHpn~k~aY~v~EL~stV~v~~y~~~--~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V 273 (346)
T COG2706 196 IVFHPNGKYAYLVNELNSTVDVLEYNPA--VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSV 273 (346)
T ss_pred EEEcCCCcEEEEEeccCCEEEEEEEcCC--CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEE
Confidence 999999998666 37889999999873 222222222 1222222 26778899999999998865 457888888
Q ss_pred cCC-ceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCC-CcEEEEECC--CcceEEEEecCCCCceeEEeec
Q 004581 497 SSS-ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF-GDVYIFNLE--IQRQHWFISRLEGASVTAAGFP 572 (744)
Q Consensus 497 ~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~d-g~i~iwd~~--~~~~~~~~~~~~~~~v~~l~~s 572 (744)
... ..+..+..... +......+.|+++|++|+++..+ ..|.+|.++ ++++...........+.|+.|.
T Consensus 274 ~~~~g~L~~~~~~~t--------eg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 274 DPDGGKLELVGITPT--------EGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred cCCCCEEEEEEEecc--------CCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 522 22222221111 34447789999999999998864 468898875 4544333332334566777774
No 261
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=7.5e-10 Score=107.51 Aligned_cols=315 Identities=13% Similarity=0.192 Sum_probs=197.2
Q ss_pred eEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecC-----------CCeEEEEE
Q 004581 182 CIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS-----------DGQVILYK 249 (744)
Q Consensus 182 ~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~-----------dg~i~iw~ 249 (744)
.-+-+.|||-| +|++-. ..-|.+|-..+...++.+. | ..|.-+.|||+.++|++=+. ...+.|||
T Consensus 212 Tetyv~wSP~GTYL~t~H-k~GI~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFH-KQGIALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeeeEEecCCceEEEEEe-ccceeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 34568999999 565555 4458999888776666664 3 46889999999999998542 26799999
Q ss_pred cccCcCCCCCCCCcccccceEEEEeeeeec--cCcc-eeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCc
Q 004581 250 ASCESIGPNDGLSSSEVIKKWIYVGSVRAH--THDV-RALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVP 326 (744)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 326 (744)
+.++.. .+.+... ...+ .-..|+ .|++
T Consensus 289 I~tG~l-----------------krsF~~~~~~~~~WP~frWS---------~DdK------------------------ 318 (698)
T KOG2314|consen 289 IATGLL-----------------KRSFPVIKSPYLKWPIFRWS---------HDDK------------------------ 318 (698)
T ss_pred ccccch-----------------hcceeccCCCccccceEEec---------cCCc------------------------
Confidence 999873 1222110 0001 112222 2332
Q ss_pred EEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCC-------eEEEEEeeccCCcccCC
Q 004581 327 MLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC-------RLDILSVRLENNVESRS 399 (744)
Q Consensus 327 ~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------~i~i~~~~~~~~~~~~~ 399 (744)
+++--.. .+|.+|+...+..+..... ....|....|+|.+.+||-... .+.+..+....
T Consensus 319 y~Arm~~-~sisIyEtpsf~lld~Ksl-------ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~------ 384 (698)
T KOG2314|consen 319 YFARMTG-NSISIYETPSFMLLDKKSL-------KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKR------ 384 (698)
T ss_pred eeEEecc-ceEEEEecCceeeeccccc-------CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccc------
Confidence 5554443 6788998877655443332 3367889999999988886532 34444333222
Q ss_pred CCCCCCCcceEEEEEecCCCCeE--EEEEcCCCCEEEEEcCC-----------ceEEEEeecCCCCCceEEeeeccCCcc
Q 004581 400 SSGGHASTSLLVQVKSKASRKII--CSTISNSGMLFAYSDHV-----------KPSLFELKKGKVGQGEWIINKRQLPRK 466 (744)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~i~--~~~~s~~g~~la~~~~~-----------~v~l~~~~~~~~~~~~~~~~~~~~~~~ 466 (744)
++....-.++. .+-|-.+|.+|++-.+. .+.||+++..+-.+.. ..+.
T Consensus 385 ------------~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~-----velk-- 445 (698)
T KOG2314|consen 385 ------------EIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV-----VELK-- 445 (698)
T ss_pred ------------eeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee-----eecc--
Confidence 11111112222 34466788888873221 2445555542211111 2222
Q ss_pred cccccEEEEeeCCCEEEEEeC---CCcEEEEEccC-C---ceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEe
Q 004581 467 LQFAHSMIFSYDSSQLIIAGH---DRRIYVVDVSS-S---ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN 539 (744)
Q Consensus 467 ~~~v~~i~~spd~~~l~~~~~---dg~i~v~d~~~-~---~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~ 539 (744)
..+...+|-|.|..+++-+. ..++.+|.+++ . +++..|. ....+.+.|||.|++++.+.
T Consensus 446 -e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d-------------k~~~N~vfwsPkG~fvvva~ 511 (698)
T KOG2314|consen 446 -ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD-------------KKFANTVFWSPKGRFVVVAA 511 (698)
T ss_pred -hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc-------------ccccceEEEcCCCcEEEEEE
Confidence 27888999999998876643 35799998873 2 3444443 34577899999999998764
Q ss_pred ---CCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEec------CCeEEEEEcCCCcc
Q 004581 540 ---CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTS------SNQVYVFDVEAKQL 598 (744)
Q Consensus 540 ---~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~------d~~v~vwd~~~~~~ 598 (744)
..|.+..+|+.-......-...| ...+.+.|.| .|+|+++++. |+-.++|++.+..+
T Consensus 512 l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDP-tGRYvvT~ss~wrhk~d~GYri~tfqGrll 577 (698)
T KOG2314|consen 512 LVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFTFQGRLL 577 (698)
T ss_pred ecccccceEEEecchhhhhhccCccc-cccccceECC-CCCEEEEeeehhhhccccceEEEEeecHHH
Confidence 57899999998533322222223 3678899999 9999999875 55678898888764
No 262
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.38 E-value=7.3e-10 Score=106.64 Aligned_cols=367 Identities=13% Similarity=0.100 Sum_probs=216.3
Q ss_pred EEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccC
Q 004581 18 SEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVED 97 (744)
Q Consensus 18 ~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (744)
..|+.++-..-..+.....++..+.+||.|+
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~------------------------------------------------- 45 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGT------------------------------------------------- 45 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcch-------------------------------------------------
Confidence 5677777666666666778999999999994
Q ss_pred CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCC---------------eEEEEEccCC
Q 004581 98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDG---------------YIRSWDAKLG 162 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg---------------~i~vwd~~~~ 162 (744)
+|++... ..|.+|.-.....+ ..+. | ..|..+.|||.+++|+|-+..+ .+.+||..+|
T Consensus 46 -~l~~~~~-~~V~~~~g~~~~~l---~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg 118 (561)
T COG5354 46 -YLFSEHA-AGVECWGGPSKAKL---VRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASG 118 (561)
T ss_pred -heehhhc-cceEEccccchhhe---eeee-c-CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCc
Confidence 4444433 45889987755544 3333 3 4689999999999999975433 4999999999
Q ss_pred ceEEEEEecCCCCCCCCceeEE-EEEEecCCeEEEEcCCCCEEEEeCCCcceE----EEeeccccceeEEEEcCCCC--E
Q 004581 163 YEIYRITVGLGGLGSGPELCIW-SLLSLRCGTLVSADSTGSVQFWDSRHGTLL----QAHSFHKGDVNALAAAPSHN--R 235 (744)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~h~~~v~~l~~~~~~~--~ 235 (744)
..+..+... ......| -+.|+-+..+++=-....+.|+++ ++..- ..++ ...|....|+|.++ .
T Consensus 119 ~iv~sf~~~------~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~ 189 (561)
T COG5354 119 MIVFSFNGI------SQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDE 189 (561)
T ss_pred eeEeecccc------CCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCce
Confidence 999888742 2222356 677887773322224556899997 33221 2222 35678888888652 2
Q ss_pred EEe-----ecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCC
Q 004581 236 VFS-----TGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGRE 310 (744)
Q Consensus 236 l~~-----~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~ 310 (744)
|+. .+.++.+++|.+..+.. +.......-+-..+.|. +.|
T Consensus 190 la~~tPEk~~kpa~~~i~sIp~~s~-----------------l~tk~lfk~~~~qLkW~---------~~g--------- 234 (561)
T COG5354 190 LAYWTPEKLNKPAMVRILSIPKNSV-----------------LVTKNLFKVSGVQLKWQ---------VLG--------- 234 (561)
T ss_pred EEEEccccCCCCcEEEEEEccCCCe-----------------eeeeeeEeecccEEEEe---------cCC---------
Confidence 332 34566666666654331 11111111111112221 111
Q ss_pred CCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEee
Q 004581 311 KPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVR 390 (744)
Q Consensus 311 ~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~ 390 (744)
.+|..-- .-+....+ -. .+...+.|+++.
T Consensus 235 ---------------~~ll~l~------~t~~ksnK---------------------sy---------fgesnLyl~~~~ 263 (561)
T COG5354 235 ---------------KYLLVLV------MTHTKSNK---------------------SY---------FGESNLYLLRIT 263 (561)
T ss_pred ---------------ceEEEEE------EEeeeccc---------------------ce---------eccceEEEEeec
Confidence 1111100 00000000 00 011244455544
Q ss_pred ccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE---cCCceEEEEeecCCCCCceEEeeeccCCccc
Q 004581 391 LENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS---DHVKPSLFELKKGKVGQGEWIINKRQLPRKL 467 (744)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~---~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~ 467 (744)
..... ....-.+.|...+|.|.++.+++. ....+.+|++.. .+.. .++ .
T Consensus 264 e~~i~-----------------V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~---Nl~~------~~P--e 315 (561)
T COG5354 264 ERSIP-----------------VEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG---NLRF------YFP--E 315 (561)
T ss_pred ccccc-----------------eeccccccceeeeecccCCceeEEecccccceeeccccc---ceEE------ecC--C
Confidence 22211 111224789999999999877662 566777787764 2221 111 1
Q ss_pred ccccEEEEeeCCCEEEEEeCC---CcEEEEEccCCce-eeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEe----
Q 004581 468 QFAHSMIFSYDSSQLIIAGHD---RRIYVVDVSSSEL-LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN---- 539 (744)
Q Consensus 468 ~~v~~i~~spd~~~l~~~~~d---g~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~---- 539 (744)
..-+.+.|||.+++++.++-| |.|.+||....-. ...+.+ ...+-+.|||||+++.+..
T Consensus 316 ~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~-------------~n~s~~~wspd~qF~~~~~ts~k 382 (561)
T COG5354 316 QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG-------------LNTSYCDWSPDGQFYDTDTTSEK 382 (561)
T ss_pred cccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec-------------CCceEeeccCCceEEEecCCCcc
Confidence 144577899999999987654 7899999875433 335554 2345567999999987764
Q ss_pred --CCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCC
Q 004581 540 --CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSN 586 (744)
Q Consensus 540 --~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~ 586 (744)
.|..|.|||+..... ...+.+.|.| .+++.-+.+.+.
T Consensus 383 ~~~Dn~i~l~~v~g~~~---------fel~~~~W~p-~~~~~ttsSs~~ 421 (561)
T COG5354 383 LRVDNSIKLWDVYGAKV---------FELTNITWDP-SGQYVTTSSSCP 421 (561)
T ss_pred cccCcceEEEEecCchh---------hhhhhccccC-CcccceeeccCC
Confidence 367899999876543 1456788988 777766665554
No 263
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=3.7e-10 Score=116.12 Aligned_cols=219 Identities=16% Similarity=0.186 Sum_probs=129.7
Q ss_pred cccceeecCCeEE--E--EE-eCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEc-
Q 004581 364 LVHNTIFSHTSLL--L--VQ-YSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSD- 437 (744)
Q Consensus 364 ~v~~~~~s~~~~~--l--~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~- 437 (744)
......|+|||.. + ++ .++.-.||.+....+. .+.+..+ .......+|||||+.|+...
T Consensus 186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~-----------~~~lt~~----~g~~~~p~wSPDG~~Laf~s~ 250 (428)
T PRK01029 186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA-----------GKKILAL----QGNQLMPTFSPRKKLLAFISD 250 (428)
T ss_pred CcccceEccCCCceEEEEEEccCCCceEEEEECCCCC-----------ceEeecC----CCCccceEECCCCCEEEEEEC
Confidence 3456789999753 2 22 2334455655544322 1122221 23345678999999988853
Q ss_pred -CC--ceEE--EEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeC-CCcEEEE--EccC-CceeeeeccC
Q 004581 438 -HV--KPSL--FELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DRRIYVV--DVSS-SELLHTFTPC 508 (744)
Q Consensus 438 -~~--~v~l--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~-dg~i~v~--d~~~-~~~~~~~~~~ 508 (744)
.+ .+.+ |++..+..+... .............+|||||+.|+..+. +|...+| ++.. +.....+..
T Consensus 251 ~~g~~di~~~~~~~~~g~~g~~~-----~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~- 324 (428)
T PRK01029 251 RYGNPDLFIQSFSLETGAIGKPR-----RLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK- 324 (428)
T ss_pred CCCCcceeEEEeecccCCCCcce-----EeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc-
Confidence 22 2333 444321111110 011111123457899999998887764 5644444 4432 233344443
Q ss_pred cccccccCCCCCCceEEEEECCCCCEEEEEeCC---CcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEec-
Q 004581 509 REEHDREIQPSEPPITKMFTSSDGQWLAAVNCF---GDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTS- 584 (744)
Q Consensus 509 ~~~~~~~~~~~~~~i~~l~~spdg~~las~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~- 584 (744)
+...+....|||||++|+..+.+ ..|++||+++++....... ...+....|+| |+++|+....
T Consensus 325 ----------~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~--~~~~~~p~wSp-DG~~L~f~~~~ 391 (428)
T PRK01029 325 ----------KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS--PENKESPSWAI-DSLHLVYSAGN 391 (428)
T ss_pred ----------CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC--CCCccceEECC-CCCEEEEEECC
Confidence 34567788999999999877543 3699999999876543322 23567889999 9998876544
Q ss_pred --CCeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCC
Q 004581 585 --SNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 628 (744)
Q Consensus 585 --d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspd 628 (744)
...|+++|+.+++... +....+.+...+|+|-
T Consensus 392 ~g~~~L~~vdl~~g~~~~------------Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 392 SNESELYLISLITKKTRK------------IVIGSGEKRFPSWGAF 425 (428)
T ss_pred CCCceEEEEECCCCCEEE------------eecCCCcccCceecCC
Confidence 3479999998886422 3334456677888875
No 264
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.33 E-value=2.9e-10 Score=118.96 Aligned_cols=174 Identities=14% Similarity=0.118 Sum_probs=119.5
Q ss_pred CeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCccccccccc
Q 004581 15 GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSV 94 (744)
Q Consensus 15 ~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (744)
..|.++|... ...+.+..+...+.+.+|+|||+
T Consensus 170 ~~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~---------------------------------------------- 202 (417)
T TIGR02800 170 YELQVADYDG-ANPQTITRSREPILSPAWSPDGQ---------------------------------------------- 202 (417)
T ss_pred ceEEEEcCCC-CCCEEeecCCCceecccCCCCCC----------------------------------------------
Confidence 3688888754 44455555777899999999995
Q ss_pred ccCCeEEEEec---CCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEE-eCCC--eEEEEEccCCceEEEE
Q 004581 95 VEDRRVALACD---DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSG-SSDG--YIRSWDAKLGYEIYRI 168 (744)
Q Consensus 95 ~~~~~la~~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~-~~dg--~i~vwd~~~~~~~~~~ 168 (744)
+||.++. ...|++||+.++.. ..+..+.+.+.+++|+|||+.|+.. +.++ .|.+||+.++... .+
T Consensus 203 ----~la~~~~~~~~~~i~v~d~~~g~~----~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l 273 (417)
T TIGR02800 203 ----KLAYVSFESGKPEIYVQDLATGQR----EKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RL 273 (417)
T ss_pred ----EEEEEEcCCCCcEEEEEECCCCCE----EEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-EC
Confidence 4444433 35899999986544 2333455667789999999977644 4443 5899999877543 33
Q ss_pred EecCCCCCCCCceeEEEEEEecCC-eEEEEc-CCC--CEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCC-
Q 004581 169 TVGLGGLGSGPELCIWSLLSLRCG-TLVSAD-STG--SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG- 243 (744)
Q Consensus 169 ~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~-~dg--~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg- 243 (744)
. .+........|+||| +|+..+ ..+ .|.++|+.+++. ..+..+...+...+|+|+|++++.++.++
T Consensus 274 ~--------~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~ 344 (417)
T TIGR02800 274 T--------NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGG 344 (417)
T ss_pred C--------CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCC
Confidence 2 233334566899999 565544 333 577888876654 44554566778899999999999887765
Q ss_pred --eEEEEEcccC
Q 004581 244 --QVILYKASCE 253 (744)
Q Consensus 244 --~i~iw~~~~~ 253 (744)
.|.+|++.++
T Consensus 345 ~~~i~~~d~~~~ 356 (417)
T TIGR02800 345 GFNIAVMDLDGG 356 (417)
T ss_pred ceEEEEEeCCCC
Confidence 7888887664
No 265
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=6e-12 Score=121.45 Aligned_cols=154 Identities=19% Similarity=0.236 Sum_probs=116.5
Q ss_pred ccCCeEEEEecCCeEEEEEecC-CCce---eEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEe
Q 004581 95 VEDRRVALACDDGCVRIYRITD-SDEL---IYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITV 170 (744)
Q Consensus 95 ~~~~~la~~~~dg~i~iwd~~~-~~~~---~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 170 (744)
.+.+.+++++.|++|++|.+.. +... .+..++..|+.+|.++.|-.+-++++++ ||-|++||.--|+.+..+..
T Consensus 745 dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~d 822 (1034)
T KOG4190|consen 745 DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMED 822 (1034)
T ss_pred ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhc
Confidence 3446899999999999999972 2222 2447788999999999999998888865 78999999888887765543
Q ss_pred cCCCCCCCCceeEEEEEEecCC-eEEEE-cCCCCEEEEeCCCcceEEEeecc-----ccceeEEEEcCCCCEEEeecCCC
Q 004581 171 GLGGLGSGPELCIWSLLSLRCG-TLVSA-DSTGSVQFWDSRHGTLLQAHSFH-----KGDVNALAAAPSHNRVFSTGSDG 243 (744)
Q Consensus 171 ~~~~~~~~~~~~v~~~~~~~~~-~l~s~-~~dg~i~vwd~~~~~~~~~~~~h-----~~~v~~l~~~~~~~~l~~~~~dg 243 (744)
... .+..+.|.++.-. +. .+++| +...+|+++|.+.++....++.. .+-+.+++..+.|+.++++-.+|
T Consensus 823 apk---~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnG 898 (1034)
T KOG4190|consen 823 APK---EGAGGNIKCLENV-DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNG 898 (1034)
T ss_pred Ccc---cCCCceeEecccC-cchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCC
Confidence 211 1233344443221 23 44444 77899999999998888777643 45689999999999999999999
Q ss_pred eEEEEEcccCc
Q 004581 244 QVILYKASCES 254 (744)
Q Consensus 244 ~i~iw~~~~~~ 254 (744)
.|.+.|.+++.
T Consensus 899 ci~~LDaR~G~ 909 (1034)
T KOG4190|consen 899 CIAILDARNGK 909 (1034)
T ss_pred cEEEEecCCCc
Confidence 99999999887
No 266
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.33 E-value=1.1e-08 Score=99.56 Aligned_cols=236 Identities=10% Similarity=0.096 Sum_probs=141.8
Q ss_pred CCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEe----CCeEEEEEeeccCCcccCCCCCCCCCcc
Q 004581 333 DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY----SCRLDILSVRLENNVESRSSSGGHASTS 408 (744)
Q Consensus 333 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~~i~i~~~~~~~~~~~~~~~~~~~~~~ 408 (744)
.+..|.+||..+.+..........|..........++++|||+++... .+.+.+.++....
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k--------------- 139 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA--------------- 139 (352)
T ss_pred CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCc---------------
Confidence 578999999998876655544333332233455578999999877743 3478888887665
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccC-Cc-ccccccEEEEee-CCCEEEEE
Q 004581 409 LLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQL-PR-KLQFAHSMIFSY-DSSQLIIA 485 (744)
Q Consensus 409 ~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~-~~-~~~~v~~i~~sp-d~~~l~~~ 485 (744)
.+.++..+....+. .+++..+.+.+.|+......+.. ++... .....+ .. ...-...-.|++ ||+++.+.
T Consensus 140 vv~ei~vp~~~~vy---~t~e~~~~~~~~Dg~~~~v~~d~-~g~~~---~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs 212 (352)
T TIGR02658 140 FVRMMDVPDCYHIF---PTANDTFFMHCRDGSLAKVGYGT-KGNPK---IKPTEVFHPEDEYLINHPAYSNKSGRLVWPT 212 (352)
T ss_pred EEEEEeCCCCcEEE---EecCCccEEEeecCceEEEEecC-CCceE---EeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence 55556554322221 12222333334444444433332 11111 111111 00 000000014566 88888777
Q ss_pred eCCCcEEEEEccCC-----ceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEe----------CCCcEEEEECC
Q 004581 486 GHDRRIYVVDVSSS-----ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN----------CFGDVYIFNLE 550 (744)
Q Consensus 486 ~~dg~i~v~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~----------~dg~i~iwd~~ 550 (744)
.+ |+|++.|+... +....+... +....-..+.+.-++++|+++.+.+.. ..+.|.++|..
T Consensus 213 ~e-G~V~~id~~~~~~~~~~~~~~~~~~----~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~ 287 (352)
T TIGR02658 213 YT-GKIFQIDLSSGDAKFLPAIEAFTEA----EKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAK 287 (352)
T ss_pred cC-CeEEEEecCCCcceecceeeecccc----ccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECC
Confidence 76 99999996432 222222210 000011233445599999999888743 22579999999
Q ss_pred CcceEEEEecCCCCceeEEeecCCCCC-eEEEEe-cCCeEEEEEcCCCcc
Q 004581 551 IQRQHWFISRLEGASVTAAGFPPQNNN-VLIITT-SSNQVYVFDVEAKQL 598 (744)
Q Consensus 551 ~~~~~~~~~~~~~~~v~~l~~sp~~~~-~l~~~~-~d~~v~vwd~~~~~~ 598 (744)
+.+....++..+ .+..++++| |++ +|++.. .++.|.++|+.+++.
T Consensus 288 t~kvi~~i~vG~--~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 288 TGKRLRKIELGH--EIDSINVSQ-DAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred CCeEEEEEeCCC--ceeeEEECC-CCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 999988887644 899999999 888 777776 578899999999964
No 267
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.32 E-value=3.6e-10 Score=103.17 Aligned_cols=120 Identities=19% Similarity=0.122 Sum_probs=94.8
Q ss_pred eeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEE-ccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEE
Q 004581 120 LIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWD-AKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSA 197 (744)
Q Consensus 120 ~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~ 197 (744)
..+.+.++||.+.|+....-|-..-+++.+.|.++|||- .+.|+.-..+.. ....++.++.+.++. .|+.|
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-------~mP~~~~~~~y~~e~~~L~vg 86 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-------YMPSPCSAMEYVSESRRLYVG 86 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh-------hCCCCceEeeeeccceEEEEE
Confidence 334488899999999999988888999999999999994 334554444432 356778899999888 78888
Q ss_pred cCCCCEEEEeCC----CcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEE
Q 004581 198 DSTGSVQFWDSR----HGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVI 246 (744)
Q Consensus 198 ~~dg~i~vwd~~----~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~ 246 (744)
-..|++.-+.+. ....++....|...|..+-|+.....+++.+.|..+.
T Consensus 87 ~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~ 139 (404)
T KOG1409|consen 87 QDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA 139 (404)
T ss_pred EecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE
Confidence 889998887654 3445567778999999999998888999998887654
No 268
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.30 E-value=3.2e-09 Score=109.03 Aligned_cols=306 Identities=14% Similarity=0.151 Sum_probs=178.2
Q ss_pred cCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCC
Q 004581 96 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGL 175 (744)
Q Consensus 96 ~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 175 (744)
.+..+++++.+|.|.-+|..+++.+-. ..+.. ....+++. ++..++.++.++.+..+|.++|+.+.+...
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~-~~~~~--~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~----- 133 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWR-VDLDE--RLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKL----- 133 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeee-ecCCC--CcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeecc-----
Confidence 356888999999999999887776532 12222 11112222 567888888999999999999999887763
Q ss_pred CCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccce-----eEEEEcCCCCEEEeecCCCeEEEEEc
Q 004581 176 GSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDV-----NALAAAPSHNRVFSTGSDGQVILYKA 250 (744)
Q Consensus 176 ~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v-----~~l~~~~~~~~l~~~~~dg~i~iw~~ 250 (744)
...+.+.-...++.++.++.++.|..||.++|+.+..+......+ .+..+. +..++.+..+|.+..+|.
T Consensus 134 ----~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~ 207 (377)
T TIGR03300 134 ----SSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDL 207 (377)
T ss_pred ----CceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEc
Confidence 122222112235578888889999999999999887766433221 111222 246788888999999998
Q ss_pred ccCcCCCCCCCCcccccceEEEEeeeeeccCcceeee-eeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEE
Q 004581 251 SCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALT-VAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLI 329 (744)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~ 329 (744)
.++.. .|........-...+..+. +. ..| .-.+..++
T Consensus 208 ~tG~~-------------~W~~~~~~~~g~~~~~~~~~~~-------~~p----------------------~~~~~~vy 245 (377)
T TIGR03300 208 QTGQP-------------LWEQRVALPKGRTELERLVDVD-------GDP----------------------VVDGGQVY 245 (377)
T ss_pred cCCCE-------------eeeeccccCCCCCchhhhhccC-------Ccc----------------------EEECCEEE
Confidence 87752 2321100000000000000 00 000 00122667
Q ss_pred EecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcce
Q 004581 330 SAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSL 409 (744)
Q Consensus 330 s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 409 (744)
.++.++.++.+|..+.+. +|......
T Consensus 246 ~~~~~g~l~a~d~~tG~~--------------------------------------~W~~~~~~---------------- 271 (377)
T TIGR03300 246 AVSYQGRVAALDLRSGRV--------------------------------------LWKRDASS---------------- 271 (377)
T ss_pred EEEcCCEEEEEECCCCcE--------------------------------------EEeeccCC----------------
Confidence 777788888888764321 23222100
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCC
Q 004581 410 LVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR 489 (744)
Q Consensus 410 ~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg 489 (744)
....++ .++.+++.+.++.+..++... +..+|.... +... ....... .+.+|++++.+|
T Consensus 272 -----------~~~p~~-~~~~vyv~~~~G~l~~~d~~t---G~~~W~~~~--~~~~--~~ssp~i--~g~~l~~~~~~G 330 (377)
T TIGR03300 272 -----------YQGPAV-DDNRLYVTDADGVVVALDRRS---GSELWKNDE--LKYR--QLTAPAV--VGGYLVVGDFEG 330 (377)
T ss_pred -----------ccCceE-eCCEEEEECCCCeEEEEECCC---CcEEEcccc--ccCC--ccccCEE--ECCEEEEEeCCC
Confidence 001111 133334445678888888754 445665432 1111 1112222 467889999999
Q ss_pred cEEEEEccCCceeeeeccCcccccccCCCCCCce-EEEEECCCCCEEEEEeCCCcEEEE
Q 004581 490 RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPI-TKMFTSSDGQWLAAVNCFGDVYIF 547 (744)
Q Consensus 490 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~l~~spdg~~las~~~dg~i~iw 547 (744)
.|+++|..+|+.+.++.. +...+ .+..+. ++ .|+.++.||.|+.|
T Consensus 331 ~l~~~d~~tG~~~~~~~~-----------~~~~~~~sp~~~-~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 331 YLHWLSREDGSFVARLKT-----------DGSGIASPPVVV-GD-GLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEEECCCCCEEEEEEc-----------CCCccccCCEEE-CC-EEEEEeCCceEEEe
Confidence 999999999999988875 33332 222332 33 57788899988875
No 269
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.29 E-value=3.5e-10 Score=111.18 Aligned_cols=168 Identities=17% Similarity=0.220 Sum_probs=139.3
Q ss_pred CCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEe------c--------------CCCEEEEEeCCCeEEE
Q 004581 97 DRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWS------A--------------DGNMLYSGSSDGYIRS 156 (744)
Q Consensus 97 ~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s------~--------------dg~~l~t~~~dg~i~v 156 (744)
..++|....||.++||+...++..+-......-.+..++..|. | |-..++-|...|.|.+
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ 84 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL 84 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence 3699999999999999998665432212222234445555552 3 3346777888999999
Q ss_pred EEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCE
Q 004581 157 WDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNR 235 (744)
Q Consensus 157 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 235 (744)
|++..|+...++... .|...|.++.++.+- .|.+++.|+.+..|+..++..++.+......+.+++++|||..
T Consensus 85 ys~~~g~it~~~st~------~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~ 158 (541)
T KOG4547|consen 85 YSVAGGEITAKLSTD------KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKI 158 (541)
T ss_pred EEecCCeEEEEEecC------CCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCE
Confidence 999999999998853 799999999988766 8999999999999999999999999999999999999999999
Q ss_pred EEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeee
Q 004581 236 VFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA 289 (744)
Q Consensus 236 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 289 (744)
+++|+ +.|++|++++.+ .+..+.+|..+|+++.|.
T Consensus 159 l~~as--~~ik~~~~~~ke-----------------vv~~ftgh~s~v~t~~f~ 193 (541)
T KOG4547|consen 159 LLTAS--RQIKVLDIETKE-----------------VVITFTGHGSPVRTLSFT 193 (541)
T ss_pred EEecc--ceEEEEEccCce-----------------EEEEecCCCcceEEEEEE
Confidence 99986 789999999987 488999999999999996
No 270
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.29 E-value=3.6e-10 Score=118.25 Aligned_cols=177 Identities=20% Similarity=0.144 Sum_probs=121.1
Q ss_pred CCCCCCeeEEecCC---CeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcC
Q 004581 1 MGLPGGRLFSSSID---GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHET 77 (744)
Q Consensus 1 ~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (744)
|+++|.+|+.+..+ ..|.+||+.+++... +..+.+.+.+++|+|||+
T Consensus 197 ~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~----------------------------- 246 (417)
T TIGR02800 197 WSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGS----------------------------- 246 (417)
T ss_pred CCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC-----------------------------
Confidence 67888888876543 589999999886544 334566778899999995
Q ss_pred ccCCCCCCcccccccccccCCeEE-EEecCC--eEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCC-C-
Q 004581 78 SESENDSDSDELHEQSVVEDRRVA-LACDDG--CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD-G- 152 (744)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~la-~~~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~d-g- 152 (744)
.|+ +.+.++ .|++||+.++.. ..+..+.......+|+|||+.|+..+.. +
T Consensus 247 ---------------------~l~~~~~~~~~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~ 301 (417)
T TIGR02800 247 ---------------------KLAVSLSKDGNPDIYVMDLDGKQL----TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGS 301 (417)
T ss_pred ---------------------EEEEEECCCCCccEEEEECCCCCE----EECCCCCCCCCCEEECCCCCEEEEEECCCCC
Confidence 333 334333 588888875443 3444555556678999999988876643 3
Q ss_pred -eEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCC---CEEEEeCCCcceEEEeeccccceeEE
Q 004581 153 -YIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTG---SVQFWDSRHGTLLQAHSFHKGDVNAL 227 (744)
Q Consensus 153 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg---~i~vwd~~~~~~~~~~~~h~~~v~~l 227 (744)
.|.++|+.+++.. .+. .+...+..+.|+|+| +++.++.++ .|.+||+.++.. ..+... ......
T Consensus 302 ~~iy~~d~~~~~~~-~l~--------~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p 370 (417)
T TIGR02800 302 PQIYMMDADGGEVR-RLT--------FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESP 370 (417)
T ss_pred ceEEEEECCCCCEE-Eee--------cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCc
Confidence 6888888776643 343 233456678899999 666666655 788999987544 333322 234567
Q ss_pred EEcCCCCEEEeecCCC
Q 004581 228 AAAPSHNRVFSTGSDG 243 (744)
Q Consensus 228 ~~~~~~~~l~~~~~dg 243 (744)
.|+|+|++|+.++.++
T Consensus 371 ~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 371 SFAPNGRMILYATTRG 386 (417)
T ss_pred eECCCCCEEEEEEeCC
Confidence 8999999888876654
No 271
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1.5e-09 Score=113.46 Aligned_cols=174 Identities=17% Similarity=0.114 Sum_probs=114.4
Q ss_pred eEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccc
Q 004581 16 SVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVV 95 (744)
Q Consensus 16 ~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (744)
.|.++|...+. .+.+..+...+.+.+|||||+
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~----------------------------------------------- 211 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGK----------------------------------------------- 211 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCC-----------------------------------------------
Confidence 58888887554 455556778899999999995
Q ss_pred cCCeEEEEec---CCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEE-EeCCC--eEEEEEccCCceEEEEE
Q 004581 96 EDRRVALACD---DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYS-GSSDG--YIRSWDAKLGYEIYRIT 169 (744)
Q Consensus 96 ~~~~la~~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t-~~~dg--~i~vwd~~~~~~~~~~~ 169 (744)
.||..+. ...|.+||+.+++. +.+....+.+...+|+|||+.|+. .+.+| .|.+||+.+++.. .+.
T Consensus 212 ---~la~~s~~~~~~~l~~~~l~~g~~----~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt 283 (430)
T PRK00178 212 ---RIAYVSFEQKRPRIFVQNLDTGRR----EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVT 283 (430)
T ss_pred ---EEEEEEcCCCCCEEEEEECCCCCE----EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-Ecc
Confidence 4544432 24689999976654 223333345567899999998874 44444 6888899887643 343
Q ss_pred ecCCCCCCCCceeEEEEEEecCC-eEEEE-cCCC--CEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCC-C-
Q 004581 170 VGLGGLGSGPELCIWSLLSLRCG-TLVSA-DSTG--SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD-G- 243 (744)
Q Consensus 170 ~~~~~~~~~~~~~v~~~~~~~~~-~l~s~-~~dg--~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~d-g- 243 (744)
.+........|+||| .|+.. ..+| .|.++|+.+++... +..........+|+|+|+.|+..+.+ +
T Consensus 284 --------~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~ 354 (430)
T PRK00178 284 --------NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGN 354 (430)
T ss_pred --------cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCc
Confidence 233445667899999 55444 3444 47777887776433 32222334467899999998876543 3
Q ss_pred -eEEEEEcccCc
Q 004581 244 -QVILYKASCES 254 (744)
Q Consensus 244 -~i~iw~~~~~~ 254 (744)
.|.++|+.++.
T Consensus 355 ~~l~~~dl~tg~ 366 (430)
T PRK00178 355 FHVAAQDLQRGS 366 (430)
T ss_pred eEEEEEECCCCC
Confidence 47778877654
No 272
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=8.8e-10 Score=113.38 Aligned_cols=181 Identities=13% Similarity=0.042 Sum_probs=112.6
Q ss_pred CeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCccccccccc
Q 004581 15 GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSV 94 (744)
Q Consensus 15 ~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (744)
..|.+.|...+.. +.+......+.+-+|||||+.++
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~------------------------------------------- 200 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFP------------------------------------------- 200 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceE-------------------------------------------
Confidence 4677888765544 44555566778889999996542
Q ss_pred ccCCeEEEEecC--CeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeC-----CCeEEEEEccCC--ceE
Q 004581 95 VEDRRVALACDD--GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-----DGYIRSWDAKLG--YEI 165 (744)
Q Consensus 95 ~~~~~la~~~~d--g~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~-----dg~i~vwd~~~~--~~~ 165 (744)
++++...+ ..|.+.++.+++.. .+....+.....+|||||+.|+..+. +..+..|++.++ ...
T Consensus 201 ----~~y~S~~~g~~~I~~~~l~~g~~~----~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~ 272 (428)
T PRK01029 201 ----YLYVSYKLGVPKIFLGSLENPAGK----KILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKP 272 (428)
T ss_pred ----EEEEEccCCCceEEEEECCCCCce----EeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcc
Confidence 22233333 45777788755442 22233444567899999999887653 234455777653 223
Q ss_pred EEEEecCCCCCCCCceeEEEEEEecCC-eEEEE-cCCCCEEEE--eCCC-cceEEEeeccccceeEEEEcCCCCEEEeec
Q 004581 166 YRITVGLGGLGSGPELCIWSLLSLRCG-TLVSA-DSTGSVQFW--DSRH-GTLLQAHSFHKGDVNALAAAPSHNRVFSTG 240 (744)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~-~~dg~i~vw--d~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~ 240 (744)
..+.. ..........|+||| .|+.. ..+|...+| ++.. +.....+..+...+...+|+|||+.|+..+
T Consensus 273 ~~lt~-------~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~ 345 (428)
T PRK01029 273 RRLLN-------EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCS 345 (428)
T ss_pred eEeec-------CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEE
Confidence 33331 122334567999999 55544 456655555 4432 333445555556778899999999888764
Q ss_pred CC---CeEEEEEcccCc
Q 004581 241 SD---GQVILYKASCES 254 (744)
Q Consensus 241 ~d---g~i~iw~~~~~~ 254 (744)
.+ ..|.+||+.++.
T Consensus 346 ~~~g~~~I~v~dl~~g~ 362 (428)
T PRK01029 346 VIKGVRQICVYDLATGR 362 (428)
T ss_pred cCCCCcEEEEEECCCCC
Confidence 43 468899987765
No 273
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.24 E-value=4.7e-10 Score=100.79 Aligned_cols=180 Identities=12% Similarity=0.154 Sum_probs=126.9
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCC-CEEEEEeCCCcEEE
Q 004581 415 SKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS-SQLIIAGHDRRIYV 493 (744)
Q Consensus 415 ~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~-~~l~~~~~dg~i~v 493 (744)
..|...|.++++..|.+.+.++.+-.|.+|++...++...+.+++...+.....-|++..|+|.. ..+...+..|.|++
T Consensus 169 NaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred ccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 45667899999999999999999999999999988888888777766655555578899999954 45566677899999
Q ss_pred EEccCCcee----eeeccCc-ccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcc-eEEEEecC------
Q 004581 494 VDVSSSELL----HTFTPCR-EEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQR-QHWFISRL------ 561 (744)
Q Consensus 494 ~d~~~~~~~----~~~~~~~-~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~-~~~~~~~~------ 561 (744)
-|+....+. ..+.... +........-...|..+.|+++|+|+++-+.- +|+|||++..+ ++.+++.+
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~ 327 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDE 327 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHH
Confidence 999633211 1111000 00000011134678899999999999998765 69999997554 44444332
Q ss_pred -----CCCce---eEEeecCCCCCeEEEEecCCeEEEEEcCCC
Q 004581 562 -----EGASV---TAAGFPPQNNNVLIITTSSNQVYVFDVEAK 596 (744)
Q Consensus 562 -----~~~~v---~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~ 596 (744)
....| ..+.||- |...+++|+..+..-+|-+.+.
T Consensus 328 l~d~YEnDaifdkFeisfSg-d~~~v~sgsy~NNfgiyp~~ss 369 (460)
T COG5170 328 LNDVYENDAIFDKFEISFSG-DDKHVLSGSYSNNFGIYPTDSS 369 (460)
T ss_pred HHhhhhccceeeeEEEEecC-CcccccccccccceeeeccccC
Confidence 11233 3478888 8888999999998888875544
No 274
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=5.4e-09 Score=108.59 Aligned_cols=171 Identities=18% Similarity=0.230 Sum_probs=103.8
Q ss_pred EEEEEcCCCCEEEEE--cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeC-CC--cEEEEEc
Q 004581 422 ICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DR--RIYVVDV 496 (744)
Q Consensus 422 ~~~~~s~~g~~la~~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~-dg--~i~v~d~ 496 (744)
...+|+|||+.|++. .++...||.++...+ .. ..+..+.......+|+|||++|+..+. ++ .|+++|+
T Consensus 265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg--~~-----~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl 337 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATK--AL-----TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNL 337 (448)
T ss_pred CCeeECCCCCEEEEEEeCCCCeEEEEEECCCC--Ce-----EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 356799999988763 455544554433111 11 122223334567899999999887654 33 5777787
Q ss_pred cCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCC-C--cEEEEECCCcceEEEEecCCCCceeEEeecC
Q 004581 497 SSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF-G--DVYIFNLEIQRQHWFISRLEGASVTAAGFPP 573 (744)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp 573 (744)
.+++..+. .. ........+|||||++|+..+.+ + .|.++|+++++... +... .......|+|
T Consensus 338 ~~g~~~~L-t~-----------~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~--~~d~~ps~sp 402 (448)
T PRK04792 338 ASGKVSRL-TF-----------EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST--RLDESPSVAP 402 (448)
T ss_pred CCCCEEEE-ec-----------CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC--CCCCCceECC
Confidence 77764332 21 12223456899999999887653 3 46677888876533 2221 1223457999
Q ss_pred CCCCeEEEEecCC---eEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCC
Q 004581 574 QNNNVLIITTSSN---QVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSP 627 (744)
Q Consensus 574 ~~~~~l~~~~~d~---~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fsp 627 (744)
|+++|+.++.++ .+++++.+++. ...+....+.+...+|+|
T Consensus 403 -dG~~I~~~~~~~g~~~l~~~~~~G~~------------~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 403 -NGTMVIYSTTYQGKQVLAAVSIDGRF------------KARLPAGQGEVKSPAWSP 446 (448)
T ss_pred -CCCEEEEEEecCCceEEEEEECCCCc------------eEECcCCCCCcCCCccCC
Confidence 999888776543 47778876553 222333445677788887
No 275
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=1e-09 Score=113.85 Aligned_cols=186 Identities=17% Similarity=0.184 Sum_probs=115.9
Q ss_pred CCCCCCeeEEecC---CCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcC
Q 004581 1 MGLPGGRLFSSSI---DGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHET 77 (744)
Q Consensus 1 ~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (744)
|+|+|.+|+..+. ...|.+||+.+++... +....+.....+|+|||+
T Consensus 225 wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~----------------------------- 274 (448)
T PRK04792 225 WSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGK----------------------------- 274 (448)
T ss_pred ECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCC-----------------------------
Confidence 6788888877643 2368999998877543 222234455789999995
Q ss_pred ccCCCCCCcccccccccccCCeEE-EEecCCe--EEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeC-CC-
Q 004581 78 SESENDSDSDELHEQSVVEDRRVA-LACDDGC--VRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-DG- 152 (744)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~la-~~~~dg~--i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~-dg- 152 (744)
.|| +.+.+|. |+++|+.+++ . ..+..+.......+|+|||+.|+..+. ++
T Consensus 275 ---------------------~La~~~~~~g~~~Iy~~dl~tg~-~---~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~ 329 (448)
T PRK04792 275 ---------------------KLALVLSKDGQPEIYVVDIATKA-L---TRITRHRAIDTEPSWHPDGKSLIFTSERGGK 329 (448)
T ss_pred ---------------------EEEEEEeCCCCeEEEEEECCCCC-e---EECccCCCCccceEECCCCCEEEEEECCCCC
Confidence 343 3455564 7777776544 3 445556666788999999998877654 33
Q ss_pred -eEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEc-CCC--CEEEEeCCCcceEEEeeccccceeEE
Q 004581 153 -YIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSAD-STG--SVQFWDSRHGTLLQAHSFHKGDVNAL 227 (744)
Q Consensus 153 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~-~dg--~i~vwd~~~~~~~~~~~~h~~~v~~l 227 (744)
.|.++|+.+++.. .+.. .........|+||| +|+..+ .++ .|.++|+.+++.. .+.... .....
T Consensus 330 ~~Iy~~dl~~g~~~-~Lt~--------~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~-~d~~p 398 (448)
T PRK04792 330 PQIYRVNLASGKVS-RLTF--------EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR-LDESP 398 (448)
T ss_pred ceEEEEECCCCCEE-EEec--------CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCC-CCCCc
Confidence 5777788777643 3331 11122346899999 554443 344 3556788877643 333221 22345
Q ss_pred EEcCCCCEEEeecC-CCe--EEEEEccc
Q 004581 228 AAAPSHNRVFSTGS-DGQ--VILYKASC 252 (744)
Q Consensus 228 ~~~~~~~~l~~~~~-dg~--i~iw~~~~ 252 (744)
.|+|||+.|+..+. ++. +.+++...
T Consensus 399 s~spdG~~I~~~~~~~g~~~l~~~~~~G 426 (448)
T PRK04792 399 SVAPNGTMVIYSTTYQGKQVLAAVSIDG 426 (448)
T ss_pred eECCCCCEEEEEEecCCceEEEEEECCC
Confidence 89999998876554 333 55666543
No 276
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=2.2e-09 Score=112.21 Aligned_cols=186 Identities=17% Similarity=0.146 Sum_probs=120.1
Q ss_pred CCCCCCeeEEecCC---CeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcC
Q 004581 1 MGLPGGRLFSSSID---GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHET 77 (744)
Q Consensus 1 ~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (744)
|+|+|.+|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+
T Consensus 206 wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~----------------------------- 255 (430)
T PRK00178 206 WSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGS----------------------------- 255 (430)
T ss_pred ECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCC-----------------------------
Confidence 67888888776533 479999999886644 333345566799999995
Q ss_pred ccCCCCCCcccccccccccCCeEE-EEecCC--eEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeC-C--
Q 004581 78 SESENDSDSDELHEQSVVEDRRVA-LACDDG--CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-D-- 151 (744)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~la-~~~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~-d-- 151 (744)
.|+ +...+| .|++||+.++.. +.+..+........|+|||+.|+..+. +
T Consensus 256 ---------------------~la~~~~~~g~~~Iy~~d~~~~~~----~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~ 310 (430)
T PRK00178 256 ---------------------KLAFVLSKDGNPEIYVMDLASRQL----SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGK 310 (430)
T ss_pred ---------------------EEEEEEccCCCceEEEEECCCCCe----EEcccCCCCcCCeEECCCCCEEEEEECCCCC
Confidence 443 333344 688888875543 345556666778899999998877654 3
Q ss_pred CeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcC-CC--CEEEEeCCCcceEEEeeccccceeEE
Q 004581 152 GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS-TG--SVQFWDSRHGTLLQAHSFHKGDVNAL 227 (744)
Q Consensus 152 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~-dg--~i~vwd~~~~~~~~~~~~h~~~v~~l 227 (744)
..|.++|+.+++.. .+.. .........|+||| .|+.... ++ .|.+||+.+++.. .+.. .......
T Consensus 311 ~~iy~~d~~~g~~~-~lt~--------~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p 379 (430)
T PRK00178 311 PQIYKVNVNGGRAE-RVTF--------VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESP 379 (430)
T ss_pred ceEEEEECCCCCEE-Eeec--------CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccC-CCCCCCc
Confidence 35888888777643 3331 11223356899999 5554443 33 4888999877643 3332 2223356
Q ss_pred EEcCCCCEEEeecCC-C--eEEEEEccc
Q 004581 228 AAAPSHNRVFSTGSD-G--QVILYKASC 252 (744)
Q Consensus 228 ~~~~~~~~l~~~~~d-g--~i~iw~~~~ 252 (744)
.|+|||+.++..+.+ + .+.+++...
T Consensus 380 ~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 380 SVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred eECCCCCEEEEEEecCCceEEEEEECCC
Confidence 899999988876543 3 455666544
No 277
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.20 E-value=1.2e-08 Score=91.54 Aligned_cols=231 Identities=15% Similarity=0.108 Sum_probs=149.2
Q ss_pred cCCeEEEEEecCCCceeEeecccCccCcEEEEEEec---CCC-EEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCc
Q 004581 105 DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA---DGN-MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPE 180 (744)
Q Consensus 105 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~---dg~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 180 (744)
.-|.+.+|++.+.+..........-...+..+.|.- +|. .|+-+-.+|.|.++....-.....+.. ..... -..
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~-ls~~k-i~~ 121 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRG-LSSKK-ISV 121 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecc-cchhh-hhh
Confidence 346789999975544331112222345677777763 555 566677789999998654444444431 11100 111
Q ss_pred eeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceE--EEeeccccceeEEEEcCC-CCEEEeecCCCeEEEEEcccCcCC
Q 004581 181 LCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLL--QAHSFHKGDVNALAAAPS-HNRVFSTGSDGQVILYKASCESIG 256 (744)
Q Consensus 181 ~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~--~~~~~h~~~v~~l~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~ 256 (744)
....++.|++.+ .++++..+|.+.+-+....... ++++.|..+.....|+.. .+.+++||.|+.+..||++...
T Consensus 122 ~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-- 199 (339)
T KOG0280|consen 122 VEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-- 199 (339)
T ss_pred eeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc--
Confidence 235677888888 8999999999996666555443 488999999999999864 4688999999999999998322
Q ss_pred CCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCe
Q 004581 257 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK 336 (744)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~ 336 (744)
.|. -...+.|...|.++.-++ +.+.++++|+.|..
T Consensus 200 ------------~~i-~~n~kvH~~GV~SI~ss~--------------------------------~~~~~I~TGsYDe~ 234 (339)
T KOG0280|consen 200 ------------TFI-WHNSKVHTSGVVSIYSSP--------------------------------PKPTYIATGSYDEC 234 (339)
T ss_pred ------------cee-eecceeeecceEEEecCC--------------------------------CCCceEEEeccccc
Confidence 111 123567888899988762 23349999999999
Q ss_pred EEEEecCccCCCCCcccCCCCCCCccccccceeecCCeE---EEEEeCCeEEEEEeec
Q 004581 337 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSL---LLVQYSCRLDILSVRL 391 (744)
Q Consensus 337 i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~~i~i~~~~~ 391 (744)
|++||.++..+. .......+.|+.+..+|.-. +.++--+..+|.++..
T Consensus 235 i~~~DtRnm~kP-------l~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~ 285 (339)
T KOG0280|consen 235 IRVLDTRNMGKP-------LFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSD 285 (339)
T ss_pred eeeeehhcccCc-------cccCccccceEEEEecchhhhHHHHHHHhcCceEEEecc
Confidence 999999865432 11222336777777777433 2223334455555443
No 278
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.14 E-value=1.5e-07 Score=96.88 Aligned_cols=320 Identities=15% Similarity=0.179 Sum_probs=180.6
Q ss_pred CCEEEEEeCCCeEEEEEccCCceEEEEEecCCC-CCCCC-ceeEEE-EEEecCCeEEEEcCCCCEEEEeCCCcceEEEee
Q 004581 142 GNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGG-LGSGP-ELCIWS-LLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHS 218 (744)
Q Consensus 142 g~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~-~~~v~~-~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 218 (744)
+..+++++.++.+..+|.++|+.+.+....... ..... ...+.+ +. ..++.++.++.+|.+..+|.++|+.+.+..
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVT-VAGGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccE-EECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 567888888899999999999999887642100 00000 001111 11 124578888899999999999999988776
Q ss_pred ccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeee-eeccCCCCCC
Q 004581 219 FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALT-VAVPISREDP 297 (744)
Q Consensus 219 ~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-~~~~~~~~~~ 297 (744)
.......+.... +..++.+..++.+..+|..+++ ..|..... .+...+. .+.
T Consensus 148 ~~~~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~-------------~~W~~~~~-----~~~~~~~~~~s------- 200 (394)
T PRK11138 148 VAGEALSRPVVS--DGLVLVHTSNGMLQALNESDGA-------------VKWTVNLD-----VPSLTLRGESA------- 200 (394)
T ss_pred CCCceecCCEEE--CCEEEEECCCCEEEEEEccCCC-------------EeeeecCC-----CCcccccCCCC-------
Confidence 533211112222 4467778889999999998877 23433111 0000000 000
Q ss_pred CCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEE
Q 004581 298 LPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLL 377 (744)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 377 (744)
|-- ....++.++.++.+..++..+.+.....
T Consensus 201 -P~v----------------------~~~~v~~~~~~g~v~a~d~~~G~~~W~~-------------------------- 231 (394)
T PRK11138 201 -PAT----------------------AFGGAIVGGDNGRVSAVLMEQGQLIWQQ-------------------------- 231 (394)
T ss_pred -CEE----------------------ECCEEEEEcCCCEEEEEEccCChhhhee--------------------------
Confidence 000 0114666777888888887664432211
Q ss_pred EEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEE
Q 004581 378 VQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWI 457 (744)
Q Consensus 378 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~ 457 (744)
....... .. .+.++......++ + .++.+++.+.++.+..++..+ +..+|.
T Consensus 232 ------------~~~~~~~------~~----~~~~~~~~~~sP~----v-~~~~vy~~~~~g~l~ald~~t---G~~~W~ 281 (394)
T PRK11138 232 ------------RISQPTG------AT----EIDRLVDVDTTPV----V-VGGVVYALAYNGNLVALDLRS---GQIVWK 281 (394)
T ss_pred ------------ccccCCC------cc----chhcccccCCCcE----E-ECCEEEEEEcCCeEEEEECCC---CCEEEe
Confidence 1000000 00 0000000000111 1 144445556677777777754 556776
Q ss_pred eeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEE
Q 004581 458 INKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA 537 (744)
Q Consensus 458 ~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las 537 (744)
..... ...+. .++..|+.++.+|.+..+|..+|+.+-..... ......+..+ .+.+|+.
T Consensus 282 ~~~~~-------~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~----------~~~~~~sp~v--~~g~l~v 340 (394)
T PRK11138 282 REYGS-------VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDL----------LHRLLTAPVL--YNGYLVV 340 (394)
T ss_pred ecCCC-------ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEccccc----------CCCcccCCEE--ECCEEEE
Confidence 43211 11222 35678888888999999999999876543320 0111122222 2557888
Q ss_pred EeCCCcEEEEECCCcceEEEEecCCCCcee-EEeecCCCCCeEEEEecCCeEEEEEc
Q 004581 538 VNCFGDVYIFNLEIQRQHWFISRLEGASVT-AAGFPPQNNNVLIITTSSNQVYVFDV 593 (744)
Q Consensus 538 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~-~l~~sp~~~~~l~~~~~d~~v~vwd~ 593 (744)
++.+|.|++.|.++++.++....... .+. ...+. +..|++++.||.|+.++.
T Consensus 341 ~~~~G~l~~ld~~tG~~~~~~~~~~~-~~~s~P~~~---~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 341 GDSEGYLHWINREDGRFVAQQKVDSS-GFLSEPVVA---DDKLLIQARDGTVYAITR 393 (394)
T ss_pred EeCCCEEEEEECCCCCEEEEEEcCCC-cceeCCEEE---CCEEEEEeCCceEEEEeC
Confidence 89999999999999998877754222 222 22332 357889999999988764
No 279
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.13 E-value=1.1e-09 Score=120.59 Aligned_cols=145 Identities=21% Similarity=0.326 Sum_probs=114.2
Q ss_pred CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCC
Q 004581 98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS 177 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 177 (744)
.+.++|+.||.|++|....+..+...++.. . .+|+.+.|+.+|+.+..+..||.+.+|.+. .+.....+
T Consensus 2221 ~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g-~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~q-------- 2289 (2439)
T KOG1064|consen 2221 PYYLTGSQDGSVRMFEWGHGQQVVCFRTAG-N-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQ-------- 2289 (2439)
T ss_pred ceEEecCCCceEEEEeccCCCeEEEeeccC-c-chhhhhhhcccCCceeeeccCCceeecccC-Ccceeccc--------
Confidence 588999999999999998777775544443 3 899999999999999999999999999985 34433333
Q ss_pred CCceeEEEEEEecCCeEEEE---cCCCCEEEEeCCC-cceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccC
Q 004581 178 GPELCIWSLLSLRCGTLVSA---DSTGSVQFWDSRH-GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE 253 (744)
Q Consensus 178 ~~~~~v~~~~~~~~~~l~s~---~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~ 253 (744)
.|........|.. ..++++ +.++.+.+||.-- +..-.....|.+.++++++.|..+.|++||.+|.|++||++..
T Consensus 2290 chnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr 2368 (2439)
T KOG1064|consen 2290 CHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR 2368 (2439)
T ss_pred cCCccccceeeee-hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH
Confidence 4777777777876 334443 3477899999643 2212223789999999999999999999999999999999876
Q ss_pred c
Q 004581 254 S 254 (744)
Q Consensus 254 ~ 254 (744)
+
T Consensus 2369 q 2369 (2439)
T KOG1064|consen 2369 Q 2369 (2439)
T ss_pred H
Confidence 5
No 280
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.10 E-value=4.4e-10 Score=123.54 Aligned_cols=179 Identities=13% Similarity=0.161 Sum_probs=144.6
Q ss_pred CCCCeeEEecCCCeEEEEEccCCceeEEeec-cCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCC
Q 004581 3 LPGGRLFSSSIDGSVSEWDLYDLKQKIVLQS-IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESE 81 (744)
Q Consensus 3 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (744)
|.....++|+.||.|++|....+..+..+.. -...|+.+.|+.+|
T Consensus 2218 p~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qG---------------------------------- 2263 (2439)
T KOG1064|consen 2218 PSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQG---------------------------------- 2263 (2439)
T ss_pred CCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccC----------------------------------
Confidence 4566789999999999999999888887653 23789999999999
Q ss_pred CCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEe---CCCeEEEEE
Q 004581 82 NDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGS---SDGYIRSWD 158 (744)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~---~dg~i~vwd 158 (744)
+.+.++..||.+.+|.+. .+.. ...+.|......+.|-. ..+++++ .++.+.+||
T Consensus 2264 ----------------nk~~i~d~dg~l~l~q~~-pk~~---~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwD 2321 (2439)
T KOG1064|consen 2264 ----------------NKFGIVDGDGDLSLWQAS-PKPY---TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWD 2321 (2439)
T ss_pred ----------------CceeeeccCCceeecccC-Ccce---eccccCCccccceeeee--hhhhccccCCCCCcccchh
Confidence 688899999999999996 4443 67788999999999865 6777765 368999999
Q ss_pred ccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEE
Q 004581 159 AKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVF 237 (744)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 237 (744)
..-......+.. .|...++++++.|.. .|++|+.+|.|++||++..+++++++. +. ...+++
T Consensus 2322 tl~~~~~s~v~~-------~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~ 2384 (2439)
T KOG1064|consen 2322 TLLPPMNSLVHT-------CHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFV 2384 (2439)
T ss_pred cccCcccceeee-------ecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheee
Confidence 643222222222 699999999999998 899999999999999998877776664 33 467899
Q ss_pred eecCCCeEEEEEcccCc
Q 004581 238 STGSDGQVILYKASCES 254 (744)
Q Consensus 238 ~~~~dg~i~iw~~~~~~ 254 (744)
+|+..|.++||++....
T Consensus 2385 ~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2385 TGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred ccCcccceEEEEccccc
Confidence 99999999999998754
No 281
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.08 E-value=1.7e-09 Score=101.38 Aligned_cols=160 Identities=13% Similarity=0.177 Sum_probs=115.5
Q ss_pred eEEEEEcCCCCEEEEE-cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEc---
Q 004581 421 IICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDV--- 496 (744)
Q Consensus 421 i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~--- 496 (744)
...+..++.+++||++ .+....++++..+..+.++++... ++. ..+++.|-.+...+..+..-|.++-+|+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~--v~~---~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC--VPK---RPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee--ccc---CcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 3445678889999997 444555777776444455543332 222 4556666666666666655554544444
Q ss_pred cCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCC
Q 004581 497 SSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNN 576 (744)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~ 576 (744)
..+.... +-+ |-+.++.++||||++++.+++.|..|+|-.....-.+..+.-.|..-|..++.-+ +
T Consensus 140 ~~~~~~~-~lG-----------hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~ 205 (390)
T KOG3914|consen 140 DSGRCEP-ILG-----------HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--N 205 (390)
T ss_pred cccCcch-hhh-----------hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--C
Confidence 3343322 223 8999999999999999999999999999888877666677777888899999986 5
Q ss_pred CeEEEEecCCeEEEEEcCCCccc
Q 004581 577 NVLIITTSSNQVYVFDVEAKQLG 599 (744)
Q Consensus 577 ~~l~~~~~d~~v~vwd~~~~~~~ 599 (744)
..|++++.|++|++||+.+|+..
T Consensus 206 ~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 206 YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred ceeeecCCCCcEEEEecccCCcc
Confidence 77999999999999999999753
No 282
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.07 E-value=3.3e-09 Score=94.98 Aligned_cols=193 Identities=17% Similarity=0.222 Sum_probs=138.2
Q ss_pred CCCCCCeeEEecCCCeEEEEEccCCceeE--EeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCc
Q 004581 1 MGLPGGRLFSSSIDGSVSEWDLYDLKQKI--VLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETS 78 (744)
Q Consensus 1 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (744)
|++.+..++++-.+|.+.+-+........ +.+.|..++|-.+|+-...
T Consensus 129 ~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~p------------------------------ 178 (339)
T KOG0280|consen 129 ISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEP------------------------------ 178 (339)
T ss_pred eeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCC------------------------------
Confidence 34567778999889999877666555544 7899999999999997663
Q ss_pred cCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEec-CCCEEEEEeCCCeEEEE
Q 004581 79 ESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSW 157 (744)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~-dg~~l~t~~~dg~i~vw 157 (744)
+.+.+|++|+.+.-||+...+... .+..+.|...|.++.-+| .+.+++||+.|-.|++|
T Consensus 179 -------------------nlvytGgDD~~l~~~D~R~p~~~i-~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~ 238 (339)
T KOG0280|consen 179 -------------------NLVYTGGDDGSLSCWDIRIPKTFI-WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVL 238 (339)
T ss_pred -------------------ceEEecCCCceEEEEEecCCccee-eecceeeecceEEEecCCCCCceEEEeccccceeee
Confidence 589999999999999998443322 244567899999998876 46799999999999999
Q ss_pred EccC-CceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCc--c---eEEEeeccccceeEEEE
Q 004581 158 DAKL-GYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHG--T---LLQAHSFHKGDVNALAA 229 (744)
Q Consensus 158 d~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~--~---~~~~~~~h~~~v~~l~~ 229 (744)
|.++ ++++..- ...+.||.+.++|.- +++.++.-+-.+|-+.+.+ + .....+.|.+-+..-.|
T Consensus 239 DtRnm~kPl~~~---------~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DW 309 (339)
T KOG0280|consen 239 DTRNMGKPLFKA---------KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDW 309 (339)
T ss_pred ehhcccCccccC---------ccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeecccc
Confidence 9874 4554443 355889999999965 5666666666777776543 2 33455566665555556
Q ss_pred cCCCCEEEeec-CCCeEE-EEEccc
Q 004581 230 APSHNRVFSTG-SDGQVI-LYKASC 252 (744)
Q Consensus 230 ~~~~~~l~~~~-~dg~i~-iw~~~~ 252 (744)
......|++++ .|+.++ +|-.-+
T Consensus 310 d~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 310 DSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ccccceeeeeeccccceeeeeeecc
Confidence 44445677764 366644 664433
No 283
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.04 E-value=5.6e-07 Score=92.76 Aligned_cols=160 Identities=14% Similarity=0.153 Sum_probs=95.8
Q ss_pred CCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccC-CCccccccccccccCCccccCCCCCCCCCcCccCCCC
Q 004581 5 GGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPS-NSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEND 83 (744)
Q Consensus 5 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (744)
++++++++.+|.|.-+|.++|+.+-..+..... . .++.. +..
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~-~--~~~~~~~~~---------------------------------- 111 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKD-G--WFSKNKSAL---------------------------------- 111 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcc-c--ccccccccc----------------------------------
Confidence 677888888888888898888887765432200 0 00000 000
Q ss_pred CCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEE-EEEecCCCEEEEEeCCCeEEEEEccCC
Q 004581 84 SDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLS-VTWSADGNMLYSGSSDGYIRSWDAKLG 162 (744)
Q Consensus 84 ~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~-~~~s~dg~~l~t~~~dg~i~vwd~~~~ 162 (744)
...-....+..++.++.+|.+.-+|..+++.+-. .... +.+.+ ... .+..++.++.++.|..+|.++|
T Consensus 112 -----~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~---~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG 180 (394)
T PRK11138 112 -----LSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQ---TKVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDG 180 (394)
T ss_pred -----cccccEEECCEEEEEcCCCEEEEEECCCCCCccc---ccCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCC
Confidence 0000111235778888999999999988877632 2211 12221 122 2345667778899999999999
Q ss_pred ceEEEEEecCCCC-CCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEe
Q 004581 163 YEIYRITVGLGGL-GSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAH 217 (744)
Q Consensus 163 ~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 217 (744)
+.+.+........ ......++. .++.++.++.+|.+...|.++|+.+...
T Consensus 181 ~~~W~~~~~~~~~~~~~~~sP~v-----~~~~v~~~~~~g~v~a~d~~~G~~~W~~ 231 (394)
T PRK11138 181 AVKWTVNLDVPSLTLRGESAPAT-----AFGGAIVGGDNGRVSAVLMEQGQLIWQQ 231 (394)
T ss_pred CEeeeecCCCCcccccCCCCCEE-----ECCEEEEEcCCCEEEEEEccCChhhhee
Confidence 9998886421000 001111211 1456777888999999999988876554
No 284
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.04 E-value=2.7e-08 Score=87.93 Aligned_cols=193 Identities=12% Similarity=-0.017 Sum_probs=138.4
Q ss_pred eeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCc
Q 004581 7 RLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDS 86 (744)
Q Consensus 7 ~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (744)
.+..++.|.++++.+++-+.....+....-.+.++++++|+
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~--------------------------------------- 170 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDP--------------------------------------- 170 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCC---------------------------------------
Confidence 46778888888888887654433332222348889999999
Q ss_pred ccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEE
Q 004581 87 DELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIY 166 (744)
Q Consensus 87 ~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~ 166 (744)
+++++.++...|..|.+..............-+..=.+..|+.....+|++..||++.|||++......
T Consensus 171 -----------~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 171 -----------SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred -----------ceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence 588888999999999998544433222344445566789999999999999999999999998866655
Q ss_pred EEEecCCCCCCCCceeEEEEEEecCC---eEEEEcCCCCEEEEeCCCcceEEEeec-------cc-cceeEEEEcCCCCE
Q 004581 167 RITVGLGGLGSGPELCIWSLLSLRCG---TLVSADSTGSVQFWDSRHGTLLQAHSF-------HK-GDVNALAAAPSHNR 235 (744)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~-------h~-~~v~~l~~~~~~~~ 235 (744)
......+. .|.+.+..+.|++-| +|+..-.-+.+.+-|++++...+.+.. |. ..|....|+.++..
T Consensus 240 ~~~sstrp---~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s 316 (344)
T KOG4532|consen 240 AEISSTRP---HHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENES 316 (344)
T ss_pred hhhcccCC---CCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcc
Confidence 54432222 588999999999877 566666678899999998776555432 22 34788888888877
Q ss_pred EEeecCCCeEEEEEcccC
Q 004581 236 VFSTGSDGQVILYKASCE 253 (744)
Q Consensus 236 l~~~~~dg~i~iw~~~~~ 253 (744)
+.+...+. +.-|++...
T Consensus 317 ~~v~~e~~-~ae~ni~sr 333 (344)
T KOG4532|consen 317 NDVKNELQ-GAEYNILSR 333 (344)
T ss_pred cccccchh-hheeecccc
Confidence 77776543 556665543
No 285
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.01 E-value=6.8e-07 Score=101.96 Aligned_cols=129 Identities=12% Similarity=0.068 Sum_probs=85.5
Q ss_pred cccEEEEeeCCCEEEEE-eCCCcEEEEEccCCceeeeeccCcc----------cccccCCCCCCceEEEEECCCCCEEEE
Q 004581 469 FAHSMIFSYDSSQLIIA-GHDRRIYVVDVSSSELLHTFTPCRE----------EHDREIQPSEPPITKMFTSSDGQWLAA 537 (744)
Q Consensus 469 ~v~~i~~spd~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~----------~~~~~~~~~~~~i~~l~~spdg~~las 537 (744)
....++|+|+++.|+++ ..++.|++||+.++.......+... .........-.....++++++|+.+++
T Consensus 741 ~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVA 820 (1057)
T PLN02919 741 QPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVA 820 (1057)
T ss_pred CccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEE
Confidence 56778888888855544 4467888888876543211100000 000000001123468999999998888
Q ss_pred EeCCCcEEEEECCCcceEEEEecC------------CCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCcc
Q 004581 538 VNCFGDVYIFNLEIQRQHWFISRL------------EGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 598 (744)
Q Consensus 538 ~~~dg~i~iwd~~~~~~~~~~~~~------------~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~ 598 (744)
-..++.|++||.+++......... .-..+..+++++ +|+++++-+.++.|++||+.+++.
T Consensus 821 Ds~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 821 DSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEECCCCcc
Confidence 888999999999887654333211 113578899999 999888888889999999998864
No 286
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=6e-08 Score=99.08 Aligned_cols=188 Identities=10% Similarity=0.049 Sum_probs=117.5
Q ss_pred CCCCCCe-eEEec---CCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCc
Q 004581 1 MGLPGGR-LFSSS---IDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHE 76 (744)
Q Consensus 1 ~~~~~~~-l~~~~---~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (744)
|+|+|++ ++..+ .+..|.++|+.+++...... ..+...+.+|+|||+.++.
T Consensus 195 wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~------------------------ 249 (419)
T PRK04043 195 WANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLL------------------------ 249 (419)
T ss_pred ECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEE------------------------
Confidence 6788886 55432 24679999999887665443 4566677889999965532
Q ss_pred CccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCC-C--e
Q 004581 77 TSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD-G--Y 153 (744)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~d-g--~ 153 (744)
......+..|.++|+.++. . +.+..+.+......|+|||+.|+..+.. + .
T Consensus 250 -----------------------~~~~~g~~~Iy~~dl~~g~-~---~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~ 302 (419)
T PRK04043 250 -----------------------TMAPKGQPDIYLYDTNTKT-L---TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPN 302 (419)
T ss_pred -----------------------EEccCCCcEEEEEECCCCc-E---EEcccCCCccCccEECCCCCEEEEEECCCCCce
Confidence 1111234578888876544 3 3444444434566899999988776642 2 6
Q ss_pred EEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCC---------CCEEEEeCCCcceEEEeeccccc
Q 004581 154 IRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADST---------GSVQFWDSRHGTLLQAHSFHKGD 223 (744)
Q Consensus 154 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~d---------g~i~vwd~~~~~~~~~~~~h~~~ 223 (744)
|.+.|+.+|+..+.... +.. ...|+||| .|+..... ..|.+.|+.++.. ..+... ..
T Consensus 303 Iy~~dl~~g~~~rlt~~-------g~~----~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~ 369 (419)
T PRK04043 303 IFMKKLNSGSVEQVVFH-------GKN----NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GV 369 (419)
T ss_pred EEEEECCCCCeEeCccC-------CCc----CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CC
Confidence 88889887766433321 111 23899999 55444332 3688889887764 344433 23
Q ss_pred eeEEEEcCCCCEEEeecCC-C--eEEEEEcccC
Q 004581 224 VNALAAAPSHNRVFSTGSD-G--QVILYKASCE 253 (744)
Q Consensus 224 v~~l~~~~~~~~l~~~~~d-g--~i~iw~~~~~ 253 (744)
.....|+|||+.|+..+.+ + .+.+.++...
T Consensus 370 ~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 370 NQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred cCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 3468999999988765432 2 3555565543
No 287
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.95 E-value=9.5e-09 Score=96.42 Aligned_cols=105 Identities=17% Similarity=0.208 Sum_probs=87.3
Q ss_pred ecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeE
Q 004581 104 CDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCI 183 (744)
Q Consensus 104 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v 183 (744)
++...+.+|++..+.. ..+-||-.-++.++|+||+++++|+..|..|||-....-..+..+-. +|..-|
T Consensus 129 gD~~~~di~s~~~~~~----~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl-------GH~eFV 197 (390)
T KOG3914|consen 129 GDVYSFDILSADSGRC----EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL-------GHKEFV 197 (390)
T ss_pred CCceeeeeecccccCc----chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc-------ccHhhe
Confidence 4555666666653222 55669999999999999999999999999999988776666666664 799999
Q ss_pred EEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeec
Q 004581 184 WSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSF 219 (744)
Q Consensus 184 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 219 (744)
..++..++..|++++.|++|++||+.+|+++.++..
T Consensus 198 S~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 198 STISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred eeeeeccCceeeecCCCCcEEEEecccCCcccccch
Confidence 999999888999999999999999999999866543
No 288
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.95 E-value=3.6e-07 Score=80.99 Aligned_cols=238 Identities=12% Similarity=0.025 Sum_probs=153.0
Q ss_pred EEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCC
Q 004581 327 MLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHAS 406 (744)
Q Consensus 327 ~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~ 406 (744)
+|+.||..|...+|...+.......- .....-...+...+-+.-...+++-+.++++..+.-....
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~c---d~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~----------- 151 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQC---DVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK----------- 151 (344)
T ss_pred EEEeccccceeeeecccCcccceeee---cccccchhhhhhhcccccceeeccCCcceeEEEEecCccc-----------
Confidence 78999999999999887543221110 0000111223333444444566666778888877754422
Q ss_pred cceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEE
Q 004581 407 TSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA 485 (744)
Q Consensus 407 ~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~ 485 (744)
.... .+ .-...++++++|++++++ +....|..|.+.. .+..+.+ ..+......--+..|+.....+|++
T Consensus 152 --~~~h--~~-~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~--~sey~~~---~~~a~t~D~gF~~S~s~~~~~FAv~ 221 (344)
T KOG4532|consen 152 --FAVH--NQ-NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDD--ESEYIEN---IYEAPTSDHGFYNSFSENDLQFAVV 221 (344)
T ss_pred --ceee--cc-ccceeeeEEcCCCceEEEecCCCcceEEEeCC--ccceeee---eEecccCCCceeeeeccCcceEEEE
Confidence 1111 11 133788999999999988 7888999999976 3333322 1222233345677899999999999
Q ss_pred eCCCcEEEEEccCC-ceeeeeccCcccccccCCCCCCceEEEEECCCCC--EEEEEeCCCcEEEEECCCcceEEEEecCC
Q 004581 486 GHDRRIYVVDVSSS-ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ--WLAAVNCFGDVYIFNLEIQRQHWFISRLE 562 (744)
Q Consensus 486 ~~dg~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~--~las~~~dg~i~iwd~~~~~~~~~~~~~~ 562 (744)
..||++.|||+... .+...... ..+.|.+.+..+.||+-|. +|...-.-+.+.+.|+.++.....+....
T Consensus 222 ~Qdg~~~I~DVR~~~tpm~~~ss-------trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~ 294 (344)
T KOG4532|consen 222 FQDGTCAIYDVRNMATPMAEISS-------TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD 294 (344)
T ss_pred ecCCcEEEEEecccccchhhhcc-------cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCc
Confidence 99999999999744 33333222 2234899999999998654 56666667889999999887655543221
Q ss_pred -------CCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCc
Q 004581 563 -------GASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 597 (744)
Q Consensus 563 -------~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~ 597 (744)
...|..-.|+. +++...+.+++ .+..|++..+.
T Consensus 295 d~~~~~~tq~ifgt~f~~-~n~s~~v~~e~-~~ae~ni~srs 334 (344)
T KOG4532|consen 295 DVERKHNTQHIFGTNFNN-ENESNDVKNEL-QGAEYNILSRS 334 (344)
T ss_pred cccccccccccccccccC-CCcccccccch-hhheeeccccc
Confidence 13467777887 66766666655 46778877663
No 289
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.91 E-value=9e-07 Score=82.89 Aligned_cols=102 Identities=15% Similarity=0.118 Sum_probs=78.2
Q ss_pred cEEEEEEec-CCCEEEEEeCCC-eEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEE-----cCCCCE
Q 004581 132 RVLSVTWSA-DGNMLYSGSSDG-YIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSA-----DSTGSV 203 (744)
Q Consensus 132 ~V~~~~~s~-dg~~l~t~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~-----~~dg~i 203 (744)
+...++.+| .+..++.+-.-| ...+||..+|+....+..+.+.+..+| -.|++|| +|++. ...|.|
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~I 79 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVI 79 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEE
Confidence 445688899 555666666655 578999999999998886555544455 5799999 55554 346789
Q ss_pred EEEeCC-CcceEEEeeccccceeEEEEcCCCCEEEee
Q 004581 204 QFWDSR-HGTLLQAHSFHKGDVNALAAAPSHNRVFST 239 (744)
Q Consensus 204 ~vwd~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~ 239 (744)
-|||.. +.+.+.++..|.-.-..+.+.|||+.|+++
T Consensus 80 gVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 80 GVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred EEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence 999999 677788888887777889999999888886
No 290
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.90 E-value=1.9e-08 Score=88.48 Aligned_cols=147 Identities=18% Similarity=0.293 Sum_probs=97.3
Q ss_pred CCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeC-----CCeEEEEEccCCceEEEEEec
Q 004581 97 DRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-----DGYIRSWDAKLGYEIYRITVG 171 (744)
Q Consensus 97 ~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~-----dg~i~vwd~~~~~~~~~~~~~ 171 (744)
++.+++++.||.+.+++.+. .+...+.+..-...-.+.++-..++.+.++.- -+..+.|+++..+....-.
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~--~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~-- 176 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDK--DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK-- 176 (319)
T ss_pred CCceEecCCCceEEEEechH--HHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccc--
Confidence 46899999999999999863 22111222211111222333345555554421 2245556554332221111
Q ss_pred CCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcceE-EEeeccccceeEEEEcC-CCCEEEeecCCCeEEE
Q 004581 172 LGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLL-QAHSFHKGDVNALAAAP-SHNRVFSTGSDGQVIL 247 (744)
Q Consensus 172 ~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~-~~~~~h~~~v~~l~~~~-~~~~l~~~~~dg~i~i 247 (744)
.....|.+++-+|.. .+++|+.||.+-+||.+..... ..+..|.+++..+-|+| ++..|++++.||.+..
T Consensus 177 ------~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 177 ------KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH 250 (319)
T ss_pred ------cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence 122348888888866 7889999999999999976544 45678999999999999 4688999999999999
Q ss_pred EEcccC
Q 004581 248 YKASCE 253 (744)
Q Consensus 248 w~~~~~ 253 (744)
||..+.
T Consensus 251 wdas~~ 256 (319)
T KOG4714|consen 251 WDASTT 256 (319)
T ss_pred EcCCCc
Confidence 998863
No 291
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=1.5e-06 Score=89.54 Aligned_cols=187 Identities=12% Similarity=0.161 Sum_probs=121.7
Q ss_pred CCCCCCeeEEec----CCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCc
Q 004581 1 MGLPGGRLFSSS----IDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHE 76 (744)
Q Consensus 1 ~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (744)
|+|+...+|+++ ..|.|.|+- ++|.+.+... ..-.+.+++|+|..
T Consensus 23 WHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~----------------------------- 71 (1416)
T KOG3617|consen 23 WHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEE----------------------------- 71 (1416)
T ss_pred cCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHH-----------------------------
Confidence 678888887775 468899985 7787766543 24456779999976
Q ss_pred CccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 004581 77 TSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRS 156 (744)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~v 156 (744)
-.||.|-.-|.+.+|...+.+.- .....|..+|..+.||++|..|+|+..-|.+.+
T Consensus 72 ---------------------~vLa~gwe~g~~~v~~~~~~e~h---tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~l 127 (1416)
T KOG3617|consen 72 ---------------------FVLAQGWEMGVSDVQKTNTTETH---TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHL 127 (1416)
T ss_pred ---------------------HHHhhccccceeEEEecCCceee---eeccCCCCCceeEEecCCCCeEEEcCCCceeEE
Confidence 37889999999999998755443 445579999999999999999999999999999
Q ss_pred EEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-------eEEEEcCCCCEE-EEeCCCcceEEEeeccccceeEEE
Q 004581 157 WDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-------TLVSADSTGSVQ-FWDSRHGTLLQAHSFHKGDVNALA 228 (744)
Q Consensus 157 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------~l~s~~~dg~i~-vwd~~~~~~~~~~~~h~~~v~~l~ 228 (744)
|....-..+..... -.+.-+..-..++...++++ ..+..+.+..+- .++.+....-.+.. | .
T Consensus 128 wr~d~~g~~q~~~~--~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~-k-------s 197 (1416)
T KOG3617|consen 128 WRYDVIGEIQTSNI--MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE-K-------S 197 (1416)
T ss_pred EEeeeccccccchh--hhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc-c-------c
Confidence 98753222222110 00001233345666667774 223333333333 44443211111111 1 1
Q ss_pred EcCCCCEEEeecCCCeEEEEEccc
Q 004581 229 AAPSHNRVFSTGSDGQVILYKASC 252 (744)
Q Consensus 229 ~~~~~~~l~~~~~dg~i~iw~~~~ 252 (744)
=.|+|..++.++.+|+|+--|-..
T Consensus 198 gv~~g~~F~~~~~~GtVyyvdq~g 221 (1416)
T KOG3617|consen 198 GVPKGTEFLFAGKSGTVYYVDQNG 221 (1416)
T ss_pred CCCCCcEEEEEcCCceEEEEcCCC
Confidence 146788899999999988777554
No 292
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.86 E-value=2.4e-06 Score=97.64 Aligned_cols=120 Identities=7% Similarity=-0.068 Sum_probs=79.3
Q ss_pred EEEEEec-CCCEEEEEeCCCeEEEEEccCCceEEEEEecC-CCCC------CCCceeEEEEEEecCC--eEEEEcCCCCE
Q 004581 134 LSVTWSA-DGNMLYSGSSDGYIRSWDAKLGYEIYRITVGL-GGLG------SGPELCIWSLLSLRCG--TLVSADSTGSV 203 (744)
Q Consensus 134 ~~~~~s~-dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~------~~~~~~v~~~~~~~~~--~l~s~~~dg~i 203 (744)
..++|+| ++..+++.+.++.|++||..++... .+.... .... ...-.....++++|++ .+++-..++.|
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I 764 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI 764 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence 5799999 5566677677889999999877543 222110 0000 0111345679999998 44556667899
Q ss_pred EEEeCCCcceEEEeec---------------------cccceeEEEEcCCCCEEEeecCCCeEEEEEcccCc
Q 004581 204 QFWDSRHGTLLQAHSF---------------------HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 254 (744)
Q Consensus 204 ~vwd~~~~~~~~~~~~---------------------h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~ 254 (744)
++||+.++.......+ .-.....++++++|+.+++-+.++.|++||..++.
T Consensus 765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~ 836 (1057)
T PLN02919 765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKR 836 (1057)
T ss_pred EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCe
Confidence 9999987653211100 01124688999999988888889999999987754
No 293
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.84 E-value=7.1e-06 Score=74.44 Aligned_cols=70 Identities=13% Similarity=0.168 Sum_probs=53.1
Q ss_pred EEEEecCCeEEEEcCCCCEEEEeCCC--cceEEEeeccc---cceeEEEEcCCCCEEEeecCCCeEEEEEcccCc
Q 004581 185 SLLSLRCGTLVSADSTGSVQFWDSRH--GTLLQAHSFHK---GDVNALAAAPSHNRVFSTGSDGQVILYKASCES 254 (744)
Q Consensus 185 ~~~~~~~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~h~---~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~ 254 (744)
.++.+++|.+++.-.|..|.|-..++ ...+.+.+... ..=..++||||+..|+.+...|+|++||+....
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~ 76 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE 76 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce
Confidence 35667888888888888888887664 34444444332 235679999999999999999999999998754
No 294
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=2.8e-07 Score=87.75 Aligned_cols=305 Identities=14% Similarity=0.115 Sum_probs=193.1
Q ss_pred CCceeEEEEEEecCCeEEEEcCCCCEEEEeCCC--c-ceEEEeeccccceeEEEEcCCCCEEEeecC-CCeEEEEEcccC
Q 004581 178 GPELCIWSLLSLRCGTLVSADSTGSVQFWDSRH--G-TLLQAHSFHKGDVNALAAAPSHNRVFSTGS-DGQVILYKASCE 253 (744)
Q Consensus 178 ~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~--~-~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~-dg~i~iw~~~~~ 253 (744)
-|...|+.+..+....+++++.||.+++|--.. | +.+..+..|.+.|.+++.+-++.++.+.+. |..++++|+.+-
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 377788888777777999999999999997653 2 334566789999999999999998999777 999999999875
Q ss_pred cCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecC
Q 004581 254 SIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD 333 (744)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~ 333 (744)
.....- .+......+..+.- +... -..+-++.-.
T Consensus 87 Dminmi---------------KL~~lPg~a~wv~s----------kGd~---------------------~s~IAVs~~~ 120 (558)
T KOG0882|consen 87 DMINMI---------------KLVDLPGFAEWVTS----------KGDK---------------------ISLIAVSLFK 120 (558)
T ss_pred chhhhc---------------ccccCCCceEEecC----------CCCe---------------------eeeEEeeccc
Confidence 431000 00000000000000 1100 0012334445
Q ss_pred CCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEE
Q 004581 334 DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQV 413 (744)
Q Consensus 334 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (744)
++.+.++|-..... .....
T Consensus 121 sg~i~VvD~~~d~~-------------------------------------------------------------q~~~f 139 (558)
T KOG0882|consen 121 SGKIFVVDGFGDFC-------------------------------------------------------------QDGYF 139 (558)
T ss_pred CCCcEEECCcCCcC-------------------------------------------------------------cccee
Confidence 66777777643110 01112
Q ss_pred EecCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeecC---CCCCceEEeeec----cCCcccccccEEEEeeCCCEEEEE
Q 004581 414 KSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKG---KVGQGEWIINKR----QLPRKLQFAHSMIFSYDSSQLIIA 485 (744)
Q Consensus 414 ~~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~---~~~~~~~~~~~~----~~~~~~~~v~~i~~spd~~~l~~~ 485 (744)
..-|..+|.++.+.+-+..+.+. ..|.|.-|..... ..+...|.++.. ..+.......++.|+|+|..+.+-
T Consensus 140 kklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl 219 (558)
T KOG0882|consen 140 KKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTL 219 (558)
T ss_pred cccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccccc
Confidence 22345667777777777776664 5778888877520 012222333321 122233367899999999999999
Q ss_pred eCCCcEEEEEccCCceeeeeccCcc---------------------cccccCCCCCC-ceEEEEECCCCCEEEEEeCCCc
Q 004581 486 GHDRRIYVVDVSSSELLHTFTPCRE---------------------EHDREIQPSEP-PITKMFTSSDGQWLAAVNCFGD 543 (744)
Q Consensus 486 ~~dg~i~v~d~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~-~i~~l~~spdg~~las~~~dg~ 543 (744)
+.|..|+++++.+|++++.+..... ..++++..|.. .-+.+.|...|++|+.++-=|
T Consensus 220 ~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g- 298 (558)
T KOG0882|consen 220 NPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG- 298 (558)
T ss_pred CcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-
Confidence 9999999999999988877654211 01122223333 335688999999999998877
Q ss_pred EEEEECCCcceEEEEecCCCCce------------------------eEEeecCCCCCeEEEEecCCeEEEE
Q 004581 544 VYIFNLEIQRQHWFISRLEGASV------------------------TAAGFPPQNNNVLIITTSSNQVYVF 591 (744)
Q Consensus 544 i~iwd~~~~~~~~~~~~~~~~~v------------------------~~l~~sp~~~~~l~~~~~d~~v~vw 591 (744)
|+|.++.++.....+-....-.. -.+.+.+ |..++.++-.-+.+++|
T Consensus 299 ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~-dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 299 IKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQK-DPTIVCTAFKKNRFYLF 369 (558)
T ss_pred EEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCC-CCeEEEeeeecceEEEE
Confidence 99999998887666532211000 1234666 77888888888888888
No 295
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.83 E-value=5.6e-05 Score=67.33 Aligned_cols=104 Identities=13% Similarity=0.107 Sum_probs=80.1
Q ss_pred CCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccc
Q 004581 142 GNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHK 221 (744)
Q Consensus 142 g~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~ 221 (744)
..+++.|+..+.+..-|..+|..+.+-. ....+.+-+..-.+.++.|+..|.+.+.+.++|.....+....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i---------lg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~ 93 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI---------LGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE 93 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh---------hCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehh
Confidence 4577788889999999999999887765 3334444444334489999999999999999998888776543
Q ss_pred cceeEEEEcCCCCEEEeecCCCeEEEEEcccCc
Q 004581 222 GDVNALAAAPSHNRVFSTGSDGQVILYKASCES 254 (744)
Q Consensus 222 ~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~ 254 (744)
.-=......+++..+..|+.|++.+..|..+..
T Consensus 94 ~vk~~a~~d~~~glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 94 TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred hhccceEEcCCCceEEEecCCCcEEEecccccc
Confidence 322334567789999999999999999988755
No 296
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.81 E-value=1.5e-06 Score=83.09 Aligned_cols=194 Identities=22% Similarity=0.230 Sum_probs=125.6
Q ss_pred CCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCC
Q 004581 4 PGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEND 83 (744)
Q Consensus 4 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (744)
.++++++++.++.|..||..+|+.+.++.. .+.+.......+
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~------------------------------------- 76 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVDG------------------------------------- 76 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEET-------------------------------------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeecc-------------------------------------
Confidence 578888889999999999999999888775 332222212222
Q ss_pred CCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEe-ecc-cCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 004581 84 SDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYH-RSL-PRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL 161 (744)
Q Consensus 84 ~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~-~~~-~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~ 161 (744)
..+++++.++.|+.+|..+++.+-.. ... .... .........+++.++.+..++.|..+|+++
T Consensus 77 --------------~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t 141 (238)
T PF13360_consen 77 --------------GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKT 141 (238)
T ss_dssp --------------TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEETTEEEEEETCSEEEEEETTT
T ss_pred --------------cccccccceeeeEecccCCcceeeeeccccccccc-cccccCceEecCEEEEEeccCcEEEEecCC
Confidence 36777788899999998878776431 111 1111 222233333488889888899999999999
Q ss_pred CceEEEEEecCCCCCCCC---ceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEe
Q 004581 162 GYEIYRITVGLGGLGSGP---ELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFS 238 (744)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~ 238 (744)
|+.+........... .+ ...+..-....++.++.++.++.+..+|..+++.+.... ...+..+ ...++..|++
T Consensus 142 G~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~ 217 (238)
T PF13360_consen 142 GKLLWKYPVGEPRGS-SPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYV 217 (238)
T ss_dssp TEEEEEEESSTT-SS---EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEE
T ss_pred CcEEEEeecCCCCCC-cceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEE
Confidence 999998875211100 00 011122223335578888888864444999998665333 2233332 3456778888
Q ss_pred ecCCCeEEEEEcccCc
Q 004581 239 TGSDGQVILYKASCES 254 (744)
Q Consensus 239 ~~~dg~i~iw~~~~~~ 254 (744)
++.++.|..||+.+++
T Consensus 218 ~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 218 TSSDGRLYALDLKTGK 233 (238)
T ss_dssp EETTTEEEEEETTTTE
T ss_pred EeCCCEEEEEECCCCC
Confidence 8899999999999987
No 297
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.80 E-value=1.1e-05 Score=77.10 Aligned_cols=148 Identities=23% Similarity=0.260 Sum_probs=92.8
Q ss_pred CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCC
Q 004581 98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS 177 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 177 (744)
..+++++.++.|..||..+++.+.. ..+.+.-... . ..++..++.++.++.|+.+|..+|+.+...........
T Consensus 37 ~~v~~~~~~~~l~~~d~~tG~~~W~-~~~~~~~~~~--~--~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~- 110 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDAKTGKVLWR-FDLPGPISGA--P--VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA- 110 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSEEEEE-EECSSCGGSG--E--EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC-
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEE-eeccccccce--e--eecccccccccceeeeEecccCCcceeeeecccccccc-
Confidence 4788889999999999987776532 2222211111 1 22456677777888999999999999998532111100
Q ss_pred CCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccc----------eeEEEEcCCCCEEEeecCCCeEEE
Q 004581 178 GPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGD----------VNALAAAPSHNRVFSTGSDGQVIL 247 (744)
Q Consensus 178 ~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~----------v~~l~~~~~~~~l~~~~~dg~i~i 247 (744)
.........+. ++.++.+..++.|..+|+++|+.+......... +..-....++ .++.++.++.+..
T Consensus 111 -~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~ 187 (238)
T PF13360_consen 111 -GVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVA 187 (238)
T ss_dssp -STB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEE
T ss_pred -ccccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEE
Confidence 01111122222 447888888999999999999999888764422 1222223344 7777777886444
Q ss_pred EEcccCc
Q 004581 248 YKASCES 254 (744)
Q Consensus 248 w~~~~~~ 254 (744)
+|+.++.
T Consensus 188 ~d~~tg~ 194 (238)
T PF13360_consen 188 VDLATGE 194 (238)
T ss_dssp EETTTTE
T ss_pred EECCCCC
Confidence 4888765
No 298
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.80 E-value=2.9e-05 Score=74.27 Aligned_cols=107 Identities=17% Similarity=0.095 Sum_probs=67.7
Q ss_pred CCeEEEEEcCCCCEEEEE--cCCceEEEEeecCCCCCceEEeee-ccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEE
Q 004581 419 RKIICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGEWIINK-RQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVD 495 (744)
Q Consensus 419 ~~i~~~~~s~~g~~la~~--~~~~v~l~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d 495 (744)
.....++|+|+++.|.++ ..+.|..|++.. .+..+-.... ..+.......-.+++..+|++.++....+.|.+++
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~ 211 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDA--DGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFD 211 (246)
T ss_dssp SSEEEEEEETTSSEEEEEETTTTEEEEEEEET--TTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred ccccceEECCcchheeecccccceeEEEeccc--cccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEEC
Confidence 335677788888776654 455555555553 1221111110 11222222467899999999888888889999999
Q ss_pred ccCCceeeeeccCcccccccCCCCCCceEEEEE-CCCCCEEEEEe
Q 004581 496 VSSSELLHTFTPCREEHDREIQPSEPPITKMFT-SSDGQWLAAVN 539 (744)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-spdg~~las~~ 539 (744)
.+ |+++..+.. ....+++++| -++.+.|...+
T Consensus 212 p~-G~~~~~i~~-----------p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 212 PD-GKLLREIEL-----------PVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp TT-SCEEEEEE------------SSSSEEEEEEESTTSSEEEEEE
T ss_pred CC-ccEEEEEcC-----------CCCCEEEEEEECCCCCEEEEEe
Confidence 76 998888876 3458999999 46767665543
No 299
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.79 E-value=3.3e-06 Score=86.42 Aligned_cols=133 Identities=12% Similarity=0.057 Sum_probs=83.0
Q ss_pred CCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEe-C--CCeEEEEEccCCceEEEEEecCCCCCCCCcee
Q 004581 106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGS-S--DGYIRSWDAKLGYEIYRITVGLGGLGSGPELC 182 (744)
Q Consensus 106 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~-~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 182 (744)
+..|.++|+.+++.. .+....+......|||||+.|+... . +..|.++|+.++.. ..+.. +...
T Consensus 212 ~~~Iyv~dl~tg~~~----~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~--------~~~~ 278 (419)
T PRK04043 212 KPTLYKYNLYTGKKE----KIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITN--------YPGI 278 (419)
T ss_pred CCEEEEEECCCCcEE----EEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEccc--------CCCc
Confidence 457899999766543 2323455667788999998776543 2 35788889877764 44441 2222
Q ss_pred EEEEEEecCC-eEEEEc-CCC--CEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCC---------CeEEEEE
Q 004581 183 IWSLLSLRCG-TLVSAD-STG--SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD---------GQVILYK 249 (744)
Q Consensus 183 v~~~~~~~~~-~l~s~~-~dg--~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~d---------g~i~iw~ 249 (744)
.....|+||| .|+..+ ..+ .|.+.|+.+++..+.... ... ...|+|||++|+..... ..|.+.+
T Consensus 279 d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d 355 (419)
T PRK04043 279 DVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLIS 355 (419)
T ss_pred cCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEE
Confidence 3345799999 444433 333 577888887765433321 111 24899999988866543 2566667
Q ss_pred cccCc
Q 004581 250 ASCES 254 (744)
Q Consensus 250 ~~~~~ 254 (744)
+.++.
T Consensus 356 ~~~g~ 360 (419)
T PRK04043 356 TNSDY 360 (419)
T ss_pred CCCCC
Confidence 66554
No 300
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.76 E-value=8.9e-06 Score=77.82 Aligned_cols=223 Identities=15% Similarity=0.160 Sum_probs=140.9
Q ss_pred cccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeec-CCeEEEEEeCCeEEEEEeeccCCcccC
Q 004581 320 WAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFS-HTSLLLVQYSCRLDILSVRLENNVESR 398 (744)
Q Consensus 320 w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~~i~i~~~~~~~~~~~~ 398 (744)
|....+.++++--..+.|+.|+..+..... .. . .....+++. +++.++++....+.+++......
T Consensus 7 ~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~---~------~~~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~---- 72 (246)
T PF08450_consen 7 WDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-ID---L------PGPNGMAFDRPDGRLYVADSGGIAVVDPDTGKV---- 72 (246)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTTEEEE-EE---S------SSEEEEEEECTTSEEEEEETTCEEEEETTTTEE----
T ss_pred EECCCCEEEEEEcCCCEEEEEECCCCeEEE-Ee---c------CCCceEEEEccCCEEEEEEcCceEEEecCCCcE----
Confidence 333355577777788899999987644221 00 1 114566777 78998888888887776554431
Q ss_pred CCCCCCCCcceEEEEE-ec-CCCCeEEEEEcCCCCEEEEEcCCc-------eEEEEeecCCCCCceEEeeeccCCccccc
Q 004581 399 SSSGGHASTSLLVQVK-SK-ASRKIICSTISNSGMLFAYSDHVK-------PSLFELKKGKVGQGEWIINKRQLPRKLQF 469 (744)
Q Consensus 399 ~~~~~~~~~~~~~~~~-~~-~~~~i~~~~~s~~g~~la~~~~~~-------v~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (744)
+.+.... .. .......++++|+|++.++..... =++|.+... ..... +......
T Consensus 73 ---------~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-------~~~~~~~ 135 (246)
T PF08450_consen 73 ---------TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-------VADGLGF 135 (246)
T ss_dssp ---------EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-------EEEEESS
T ss_pred ---------EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-------EecCccc
Confidence 1333332 11 346678999999999777642221 357777652 22111 1222346
Q ss_pred ccEEEEeeCCCEEEEE-eCCCcEEEEEccC-Cc-e--eeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcE
Q 004581 470 AHSMIFSYDSSQLIIA-GHDRRIYVVDVSS-SE-L--LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDV 544 (744)
Q Consensus 470 v~~i~~spd~~~l~~~-~~dg~i~v~d~~~-~~-~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i 544 (744)
.+.|+|+||++.|+++ +..+.|..|++.. +. . .+.+..... ..+..-.+++..+|++.++....+.|
T Consensus 136 pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~--------~~g~pDG~~vD~~G~l~va~~~~~~I 207 (246)
T PF08450_consen 136 PNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG--------GPGYPDGLAVDSDGNLWVADWGGGRI 207 (246)
T ss_dssp EEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS--------SSCEEEEEEEBTTS-EEEEEETTTEE
T ss_pred ccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCC--------CCcCCCcceEcCCCCEEEEEcCCCEE
Confidence 7899999999988655 5578899999863 22 1 122211000 22357889999999988888889999
Q ss_pred EEEECCCcceEEEEecCCCCceeEEeec-CCCCCeEEEEec
Q 004581 545 YIFNLEIQRQHWFISRLEGASVTAAGFP-PQNNNVLIITTS 584 (744)
Q Consensus 545 ~iwd~~~~~~~~~~~~~~~~~v~~l~~s-p~~~~~l~~~~~ 584 (744)
.+++.+ ++....+... ...+++++|. + +.+.|++.+.
T Consensus 208 ~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~-~~~~L~vTta 245 (246)
T PF08450_consen 208 VVFDPD-GKLLREIELP-VPRPTNCAFGGP-DGKTLYVTTA 245 (246)
T ss_dssp EEEETT-SCEEEEEE-S-SSSEEEEEEEST-TSSEEEEEEB
T ss_pred EEECCC-ccEEEEEcCC-CCCEEEEEEECC-CCCEEEEEeC
Confidence 999988 7776666554 3489999994 5 6677776653
No 301
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.75 E-value=2.5e-07 Score=93.57 Aligned_cols=191 Identities=16% Similarity=0.200 Sum_probs=129.3
Q ss_pred CeEEEEecCCeEEEEEecC-CCceeEeecccCccCcEEEEEEecCCC---EEEEEeCCCeEEEEEccC--CceEEEEEec
Q 004581 98 RRVALACDDGCVRIYRITD-SDELIYHRSLPRVSGRVLSVTWSADGN---MLYSGSSDGYIRSWDAKL--GYEIYRITVG 171 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~-~~~~~~~~~~~~h~~~V~~~~~s~dg~---~l~t~~~dg~i~vwd~~~--~~~~~~~~~~ 171 (744)
+-+|.++.-| +.+-|+.. ......++.+. .-.|-.+.|+|... ++++.+ ...-.+|++.. .+.+.-+..
T Consensus 37 rdi~lAsr~g-l~i~dld~p~~ppr~l~h~t--pw~vad~qws~h~a~~~wiVsts-~qkaiiwnlA~ss~~aIef~lh- 111 (1081)
T KOG0309|consen 37 RDIVLASRQG-LYIIDLDDPFTPPRWLHHIT--PWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNLAKSSSNAIEFVLH- 111 (1081)
T ss_pred chhhhhhhcC-eEEEeccCCCCCceeeeccC--cchhcceecccCCCCceeEEecC-cchhhhhhhhcCCccceEEEEe-
Confidence 3455556555 44556653 23332222222 12466777887532 455444 44667898753 233333332
Q ss_pred CCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCC-cceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEE
Q 004581 172 LGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRH-GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248 (744)
Q Consensus 172 ~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw 248 (744)
+|...|+.+.|.|.. .+++++.|-.+..||+++ ..++..+..-......++|+-....+.+.+....|.+|
T Consensus 112 ------ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vw 185 (1081)
T KOG0309|consen 112 ------GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVW 185 (1081)
T ss_pred ------cCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEE
Confidence 799999999999988 789999999999999987 45566666556667889998766666666777889999
Q ss_pred EcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEE
Q 004581 249 KASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPML 328 (744)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l 328 (744)
|.+.+.. ++..+.+|...|..++|.. .....+
T Consensus 186 d~r~gs~----------------pl~s~K~~vs~vn~~~fnr--------------------------------~~~s~~ 217 (1081)
T KOG0309|consen 186 DLRKGST----------------PLCSLKGHVSSVNSIDFNR--------------------------------FKYSEI 217 (1081)
T ss_pred eccCCCc----------------ceEEecccceeeehHHHhh--------------------------------hhhhhh
Confidence 9988763 3567778888888888741 011268
Q ss_pred EEecCCCeEEEEecCccCC
Q 004581 329 ISAGDDTKLFAYCANEFTK 347 (744)
Q Consensus 329 ~s~~~d~~i~~~~~~~~~~ 347 (744)
.+++.|++|++|+......
T Consensus 218 ~s~~~d~tvkfw~y~kSt~ 236 (1081)
T KOG0309|consen 218 MSSSNDGTVKFWDYSKSTT 236 (1081)
T ss_pred cccCCCCceeeeccccccc
Confidence 8999999999999876443
No 302
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.74 E-value=1.2e-07 Score=85.73 Aligned_cols=285 Identities=13% Similarity=0.148 Sum_probs=161.5
Q ss_pred CCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCc-----ceEEEeeccc------------cceeEEEEcCCC--CEEE
Q 004581 178 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHG-----TLLQAHSFHK------------GDVNALAAAPSH--NRVF 237 (744)
Q Consensus 178 ~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~-----~~~~~~~~h~------------~~v~~l~~~~~~--~~l~ 237 (744)
.....|+++.|-..| +|++|+..|.|.++.-+.. +....+++|. ..|..+.|..++ ..++
T Consensus 24 tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 24 TEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred cccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 356789999999998 9999999999999976532 2233455554 357888887654 4567
Q ss_pred eecCCCeEEEEEcccCcCC--------------CCCCCCcc------cccce--EEEEee----eeeccCcceeeeeecc
Q 004581 238 STGSDGQVILYKASCESIG--------------PNDGLSSS------EVIKK--WIYVGS----VRAHTHDVRALTVAVP 291 (744)
Q Consensus 238 ~~~~dg~i~iw~~~~~~~~--------------~~~~~~~~------~~~~~--~~~~~~----~~~h~~~v~~l~~~~~ 291 (744)
..+.|.+|++|.+...... ..+.+... ..... ...... ...|...+.++.+.
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N-- 181 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN-- 181 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec--
Confidence 7779999999998776320 00000000 00000 111111 12344455555553
Q ss_pred CCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccC-CCCCcccCCCCCCCccccccceee
Q 004581 292 ISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT-KFSPHEICPAPQRVPIHLVHNTIF 370 (744)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~ 370 (744)
.|. +.+++ +.|-.|.+|++.-.. .+......+.........|++..|
T Consensus 182 -------sD~------------------------et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeF 229 (460)
T COG5170 182 -------SDK------------------------ETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEF 229 (460)
T ss_pred -------Cch------------------------heeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhccc
Confidence 222 24554 447789999887432 122222222333334567888999
Q ss_pred cCCeEEE--E-EeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEee
Q 004581 371 SHTSLLL--V-QYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELK 447 (744)
Q Consensus 371 s~~~~~l--~-~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~ 447 (744)
+|....+ . +..+.+++-+++...........-...-...-......--..|..+.|+++|+++++-+-.++++|+.+
T Consensus 230 hp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvn 309 (460)
T COG5170 230 HPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVN 309 (460)
T ss_pred CHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecc
Confidence 9965433 3 345689998888443221000000000000000001112356788999999999999999999999998
Q ss_pred cCCCCCceEEeeec---cCCccc--c---cccEEEEeeCCCEEEEEeCCCcEEEEEc
Q 004581 448 KGKVGQGEWIINKR---QLPRKL--Q---FAHSMIFSYDSSQLIIAGHDRRIYVVDV 496 (744)
Q Consensus 448 ~~~~~~~~~~~~~~---~~~~~~--~---~v~~i~~spd~~~l~~~~~dg~i~v~d~ 496 (744)
.....++...+... ++.... . .--.+.||.|.+.+.+|+.....-+|-.
T Consensus 310 m~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 310 MAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred cccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 73333322111100 000000 0 2235788999999999999888777764
No 303
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.74 E-value=2.6e-05 Score=70.86 Aligned_cols=214 Identities=16% Similarity=0.204 Sum_probs=126.0
Q ss_pred EEEEecCCeEEEEEecCCCc-ee-EeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCC
Q 004581 100 VALACDDGCVRIYRITDSDE-LI-YHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS 177 (744)
Q Consensus 100 la~~~~dg~i~iwd~~~~~~-~~-~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 177 (744)
+++.-.|..|.|=...++=. .. .-..-+...-.-+-++||||+..||.+...|+|+++|+. |..+..+..... ...
T Consensus 11 ~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~-g~~lf~I~p~~~-~~~ 88 (282)
T PF15492_consen 11 LLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLM-GSELFVIPPAMS-FPG 88 (282)
T ss_pred EEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecc-cceeEEcCcccc-cCC
Confidence 33444556777766542211 10 001222223346789999999999999999999999985 455656553221 111
Q ss_pred CCceeEEEEEEecCC-------eEEEEcCCCCEEEEeCCC-----cceEEEeec---cccceeEEEEcCCCCEEEeecCC
Q 004581 178 GPELCIWSLLSLRCG-------TLVSADSTGSVQFWDSRH-----GTLLQAHSF---HKGDVNALAAAPSHNRVFSTGSD 242 (744)
Q Consensus 178 ~~~~~v~~~~~~~~~-------~l~s~~~dg~i~vwd~~~-----~~~~~~~~~---h~~~v~~l~~~~~~~~l~~~~~d 242 (744)
.....|..+.|.+.. .|+.-..+|.++=|-+.. .+...++.. +...|.++.++|..++|++||..
T Consensus 89 d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~ 168 (282)
T PF15492_consen 89 DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCE 168 (282)
T ss_pred ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccC
Confidence 345667777777532 467777788887776532 233333332 46789999999999988887652
Q ss_pred C-----------eEEEEEcccCcC------CCCCCCCccc-ccceEEEE--eee---eeccCcceeeeeeccCCCCCCCC
Q 004581 243 G-----------QVILYKASCESI------GPNDGLSSSE-VIKKWIYV--GSV---RAHTHDVRALTVAVPISREDPLP 299 (744)
Q Consensus 243 g-----------~i~iw~~~~~~~------~~~~~~~~~~-~~~~~~~~--~~~---~~h~~~v~~l~~~~~~~~~~~~~ 299 (744)
. -+..|.+-.+.. ...+.+.... ...-+... ..+ ......|..|.++ |
T Consensus 169 ~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlS---------P 239 (282)
T PF15492_consen 169 QNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLS---------P 239 (282)
T ss_pred CCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEEC---------C
Confidence 1 256676655432 1111111111 01111111 000 1123456666665 5
Q ss_pred cccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCC
Q 004581 300 EDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKF 348 (744)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~ 348 (744)
|++ .|++...+|.|.+|++......
T Consensus 240 dg~------------------------~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 240 DGS------------------------LLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred CCC------------------------EEEEEEcCCeEEEEecCcchhh
Confidence 555 9999999999999999876543
No 304
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=5.2e-08 Score=94.81 Aligned_cols=228 Identities=13% Similarity=0.133 Sum_probs=155.2
Q ss_pred eeEEecCCCeEEEEEccC-------CceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCcc
Q 004581 7 RLFSSSIDGSVSEWDLYD-------LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSE 79 (744)
Q Consensus 7 ~l~~~~~d~~i~iwd~~~-------~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (744)
-+++++.|.+|++|.++. ..+..+++.|..+|..+.|-.+.++++++ +.++.+|+.+...........
T Consensus 749 SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-----D~giHlWDPFigr~Laq~~da 823 (1034)
T KOG4190|consen 749 SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC-----DGGIHLWDPFIGRLLAQMEDA 823 (1034)
T ss_pred ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec-----cCcceeecccccchhHhhhcC
Confidence 478999999999999863 34677899999999999999999998775 446677777653222222222
Q ss_pred CCCCCCcccccccccccCCeEEEE-ecCCeEEEEEecCCCceeEeecc--cCccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 004581 80 SENDSDSDELHEQSVVEDRRVALA-CDDGCVRIYRITDSDELIYHRSL--PRVSGRVLSVTWSADGNMLYSGSSDGYIRS 156 (744)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~la~~-~~dg~i~iwd~~~~~~~~~~~~~--~~h~~~V~~~~~s~dg~~l~t~~~dg~i~v 156 (744)
... ..+..+.+....+...+.+| +...+|+++|....+-..-.+.. .+..+-+.+++..+.|++|+.+-..|+|.+
T Consensus 824 pk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~ 902 (1034)
T KOG4190|consen 824 PKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAI 902 (1034)
T ss_pred ccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEE
Confidence 221 22223333333334444444 77899999999865543222333 355678999999999999999999999999
Q ss_pred EEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEE-EeCCCcceEEEeeccccceeEEEEcCCCCE
Q 004581 157 WDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQF-WDSRHGTLLQAHSFHKGDVNALAAAPSHNR 235 (744)
Q Consensus 157 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~v-wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 235 (744)
.|.++|+.+...+ ..+.....++-..|..|+....|.++.+ |-.-.|....+.+....+..-+. .-|..
T Consensus 903 LDaR~G~vINswr--------pmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepahflq--svgpS 972 (1034)
T KOG4190|consen 903 LDARNGKVINSWR--------PMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFLQ--SVGPS 972 (1034)
T ss_pred EecCCCceeccCC--------cccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhhh--ccCce
Confidence 9999999887766 3445555555444557788888999998 98777766655553333322111 12556
Q ss_pred EEeecCCCeEEEEEc
Q 004581 236 VFSTGSDGQVILYKA 250 (744)
Q Consensus 236 l~~~~~dg~i~iw~~ 250 (744)
|+++.....+.+|.-
T Consensus 973 LV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 973 LVTAQNGNILGVYAD 987 (1034)
T ss_pred eEEeccCcEEEEEec
Confidence 777766667777753
No 305
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.73 E-value=1.2e-07 Score=95.82 Aligned_cols=248 Identities=16% Similarity=0.165 Sum_probs=159.7
Q ss_pred eEEecCCCeEEEEEccC---CceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCC
Q 004581 8 LFSSSIDGSVSEWDLYD---LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS 84 (744)
Q Consensus 8 l~~~~~d~~i~iwd~~~---~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (744)
-++......-.+|++.. ...-..+.+|+..|+.+-|+|...
T Consensus 84 wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~p------------------------------------ 127 (1081)
T KOG0309|consen 84 WIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHP------------------------------------ 127 (1081)
T ss_pred eEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCC------------------------------------
Confidence 34444555667898863 334446889999999999999874
Q ss_pred CcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCce
Q 004581 85 DSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYE 164 (744)
Q Consensus 85 ~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~ 164 (744)
..||+++.|-.+..||+.+..... ..+..-..+-..++|+.....+...+....|++||.+.|..
T Consensus 128 -------------dVlatcsvdt~vh~wd~rSp~~p~--ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~ 192 (1081)
T KOG0309|consen 128 -------------DVLATCSVDTYVHAWDMRSPHRPF--YSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGST 192 (1081)
T ss_pred -------------cceeeccccccceeeeccCCCcce--eeeecccccCceeeecccCcchhhhccCCceEEEeccCCCc
Confidence 479999999999999998655443 33333445667899987555555556677899999987754
Q ss_pred -EEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcceEE-EeeccccceeEEEEcCCCCE--EEe
Q 004581 165 -IYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQ-AHSFHKGDVNALAAAPSHNR--VFS 238 (744)
Q Consensus 165 -~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~--l~~ 238 (744)
+..++ +|...|..+.|..-- .+.+.+.||+|++||.+....-. .......+|.--++.|-|.- +.-
T Consensus 193 pl~s~K--------~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp 264 (1081)
T KOG0309|consen 193 PLCSLK--------GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMP 264 (1081)
T ss_pred ceEEec--------ccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecc
Confidence 45555 688999999998754 79999999999999987533221 11223456777777775432 222
Q ss_pred ecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcccccc
Q 004581 239 TGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYH 318 (744)
Q Consensus 239 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (744)
.-.+..+.+++.+..... -.....-..+..+.+|+..|...-|-. . .+.....
T Consensus 265 ~~G~n~v~~~~c~n~d~e-------~n~~~~~~pVh~F~GH~D~V~eFlWR~----------r-------~e~~~d~--- 317 (1081)
T KOG0309|consen 265 MVGGNMVPQLRCENSDLE-------WNVFDLNTPVHTFVGHDDVVLEFLWRK----------R-------KECDGDY--- 317 (1081)
T ss_pred ccCCeeeeeccccchhhh-------hccccCCcceeeecCcchHHHHHhhhh----------c-------ccccCCC---
Confidence 222335555554443210 000111234778889998887665520 0 0000000
Q ss_pred ccccCCCcEEEEecCCCeEEEEecCc
Q 004581 319 KWAHLGVPMLISAGDDTKLFAYCANE 344 (744)
Q Consensus 319 ~w~~~~~~~l~s~~~d~~i~~~~~~~ 344 (744)
....-.|++=+.|..+++|.+..
T Consensus 318 ---d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 318 ---DSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ---CccceeEEEeecCCceEeeeccH
Confidence 00112799999999999999874
No 306
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.68 E-value=0.00012 Score=79.43 Aligned_cols=183 Identities=15% Similarity=0.146 Sum_probs=110.4
Q ss_pred CCeEEEEEcCCCCEEEE-----EcC-CceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEE---eCCC
Q 004581 419 RKIICSTISNSGMLFAY-----SDH-VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA---GHDR 489 (744)
Q Consensus 419 ~~i~~~~~s~~g~~la~-----~~~-~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~---~~dg 489 (744)
..-++++|--||+++|+ ..+ ..+++|+.+. .... . -......-.+++|-|.|..+++- ..|+
T Consensus 196 ~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg---~Lns-----~-se~~~~l~~~LsWkPsgs~iA~iq~~~sd~ 266 (1265)
T KOG1920|consen 196 DHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREG---ALNS-----T-SEPVEGLQHSLSWKPSGSLIAAIQCKTSDS 266 (1265)
T ss_pred cCCceEEEccCCcEEEEEEEeccCCceeEEEecccc---hhhc-----c-cCcccccccceeecCCCCeEeeeeecCCCC
Confidence 34457889999999988 244 7888888752 1110 0 01111144688999999999886 3456
Q ss_pred cEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEE---EeCCCcEEEEECCCcceEEEEec---CCC
Q 004581 490 RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA---VNCFGDVYIFNLEIQRQHWFISR---LEG 563 (744)
Q Consensus 490 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las---~~~dg~i~iwd~~~~~~~~~~~~---~~~ 563 (744)
.|.+|.- +|-.-..|.-.. +....++..++|+.++..||+ ......|++|-+.+.. +.++. ...
T Consensus 267 ~IvffEr-NGL~hg~f~l~~-------p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh--WYLKq~l~~~~ 336 (1265)
T KOG1920|consen 267 DIVFFER-NGLRHGEFVLPF-------PLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH--WYLKQELQFSQ 336 (1265)
T ss_pred cEEEEec-CCccccccccCC-------cccccchheeeecCCCCceeeeecccccceEEEEEecCeE--EEEEEEEeccc
Confidence 7999985 343322222110 113445999999999999998 4444559999887653 33221 122
Q ss_pred CceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCCCCCcEEEEEcCceEE
Q 004581 564 ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMC 643 (744)
Q Consensus 564 ~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~~~ 643 (744)
... +.|+|.....|.+-..+|.+.++++.-. ..+||+ .....++.+++.+-
T Consensus 337 ~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~~~--------------------------t~~s~~-d~S~~~VIDgs~ll 387 (1265)
T KOG1920|consen 337 KAL--LMWDPVTEKTLHVLRESGQRLVRDFAWT--------------------------TDRSPN-DGSTVYVIDGSRLL 387 (1265)
T ss_pred ccc--ccccCCCceeEEEEecCCcEEEEEEEEe--------------------------eeccCC-CCceEEEEeCCEEE
Confidence 222 7899855555655556666666655422 233354 23345566777777
Q ss_pred EEeCCC
Q 004581 644 VIDFGR 649 (744)
Q Consensus 644 ~~~~~~ 649 (744)
+-++..
T Consensus 388 vT~ls~ 393 (1265)
T KOG1920|consen 388 VTPLSL 393 (1265)
T ss_pred Eecchh
Confidence 777755
No 307
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.1e-06 Score=83.83 Aligned_cols=274 Identities=12% Similarity=0.106 Sum_probs=172.2
Q ss_pred CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeC-CCeEEEEEccCCceEEEEEecCCCCC
Q 004581 98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-DGYIRSWDAKLGYEIYRITVGLGGLG 176 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~ 176 (744)
+++.+++-||.++.|.-..-....+..-+..|-+.|.+++.+.+|..+.|.+. |..++++|+++-..+..++..
T Consensus 21 ~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~----- 95 (558)
T KOG0882|consen 21 KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLV----- 95 (558)
T ss_pred heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccc-----
Confidence 48999999999999987643556666888899999999999999999999877 999999999887666555432
Q ss_pred CCCceeEEEEEEecCC---eEE-EEcCCCCEEEEeCCCc--ceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEc
Q 004581 177 SGPELCIWSLLSLRCG---TLV-SADSTGSVQFWDSRHG--TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKA 250 (744)
Q Consensus 177 ~~~~~~v~~~~~~~~~---~l~-s~~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~ 250 (744)
.....+. ...++.. .++ +.-.++.+.|+|-... +....-..|..+|.++.+++.+..+++....|.|.-|..
T Consensus 96 -~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~ 173 (558)
T KOG0882|consen 96 -DLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSA 173 (558)
T ss_pred -cCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecC
Confidence 1122222 2222322 333 3445788999997753 333445679999999999999999999999999999998
Q ss_pred ccCcCCCCCCCCcccccceEEE-----EeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCC
Q 004581 251 SCESIGPNDGLSSSEVIKKWIY-----VGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGV 325 (744)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 325 (744)
...-+ ... ....|.+ +..+........++.++ |++.
T Consensus 174 e~~~q-fPr------~~l~~~~K~eTdLy~f~K~Kt~pts~Efs---------p~g~----------------------- 214 (558)
T KOG0882|consen 174 EGPFQ-FPR------TNLNFELKHETDLYGFPKAKTEPTSFEFS---------PDGA----------------------- 214 (558)
T ss_pred CCccc-Ccc------ccccccccccchhhcccccccCccceEEc---------cccC-----------------------
Confidence 85211 000 1111211 11112223445566765 5554
Q ss_pred cEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCC
Q 004581 326 PMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHA 405 (744)
Q Consensus 326 ~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 405 (744)
.+.+-+.|..|+++...+....+......... .+-|.. ...+-.+..+..-
T Consensus 215 -qistl~~DrkVR~F~~KtGklvqeiDE~~t~~----------~~q~ks--------~y~l~~VelgRRm---------- 265 (558)
T KOG0882|consen 215 -QISTLNPDRKVRGFVFKTGKLVQEIDEVLTDA----------QYQPKS--------PYGLMHVELGRRM---------- 265 (558)
T ss_pred -cccccCcccEEEEEEeccchhhhhhhccchhh----------hhcccc--------ccccceeehhhhh----------
Confidence 77788899999999998765443332111000 000000 0000000000000
Q ss_pred CcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeec
Q 004581 406 STSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKK 448 (744)
Q Consensus 406 ~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~ 448 (744)
..-.++.......-+.+.|...|++|.+++--.|+++++.+
T Consensus 266 --averelek~~~~~~~~~~fdes~~flly~t~~gikvin~~t 306 (558)
T KOG0882|consen 266 --AVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDT 306 (558)
T ss_pred --hHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeec
Confidence 00011112223445567899999999999888899999886
No 308
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.66 E-value=8.7e-08 Score=60.92 Aligned_cols=36 Identities=53% Similarity=0.880 Sum_probs=34.4
Q ss_pred eecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEE
Q 004581 123 HRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWD 158 (744)
Q Consensus 123 ~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd 158 (744)
.+++.+|.+.|.+|+|+|++++|++++.|+.|++||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 378999999999999999999999999999999997
No 309
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.65 E-value=2.3e-07 Score=81.90 Aligned_cols=94 Identities=17% Similarity=0.273 Sum_probs=68.4
Q ss_pred CeEEEEEecCCCceeEeecccCccCcEEEEEEecCCC-EEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEE
Q 004581 107 GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWS 185 (744)
Q Consensus 107 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 185 (744)
+..+.|++...+.+. .-..-...|.+++-+|..+ .+++|+.||.+-+||.+.......+. ..|+..++.
T Consensus 159 d~~~a~~~~p~~t~~---~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l-------~ahk~~i~e 228 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLI---PSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLL-------KAHKAEIWE 228 (319)
T ss_pred cceeeeccccccccc---ccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHH-------HHhhhhhhh
Confidence 456677765332221 1111223499999999765 56677889999999998874443333 269999999
Q ss_pred EEEecCC--eEEEEcCCCCEEEEeCCC
Q 004581 186 LLSLRCG--TLVSADSTGSVQFWDSRH 210 (744)
Q Consensus 186 ~~~~~~~--~l~s~~~dg~i~vwd~~~ 210 (744)
+-|+|.. .|+++++||.+..||..+
T Consensus 229 V~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 229 VHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeccCCCchheeEecCCCcEEEEcCCC
Confidence 9999977 899999999999999873
No 310
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=1.4e-07 Score=86.75 Aligned_cols=150 Identities=16% Similarity=0.205 Sum_probs=118.1
Q ss_pred cccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCC-----ceEE
Q 004581 92 QSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG-----YEIY 166 (744)
Q Consensus 92 ~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~-----~~~~ 166 (744)
++.+...+-++.+-+..|-+-|++++-. +.|. -.+-|.++.|...++++..|+..|.|.+.|++.+ .+..
T Consensus 219 wSlni~gyhfs~G~sqqv~L~nvetg~~----qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 219 WSLNIMGYHFSVGLSQQVLLTNVETGHQ----QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhccceeeecccccceeEEEEeecccc----cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 3333334446667778899999986655 4444 6678999999998999999999999999999764 4556
Q ss_pred EEEecCCCCCCCCceeEEEEEEec-CC-eEEEEcCCCCEEEEeCCCcce---EEEeeccccceeE--EEEcCCCCEEEee
Q 004581 167 RITVGLGGLGSGPELCIWSLLSLR-CG-TLVSADSTGSVQFWDSRHGTL---LQAHSFHKGDVNA--LAAAPSHNRVFST 239 (744)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~vwd~~~~~~---~~~~~~h~~~v~~--l~~~~~~~~l~~~ 239 (744)
++. |...|+++.... ++ .|++.+.+|+|++||.+.-++ +.++.+|...-.- +-..+....++++
T Consensus 294 rly---------h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~ 364 (425)
T KOG2695|consen 294 RLY---------HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSV 364 (425)
T ss_pred EEE---------cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEc
Confidence 665 889999998887 44 899999999999999987666 8899998754333 3345666789999
Q ss_pred cCCCeEEEEEcccCcC
Q 004581 240 GSDGQVILYKASCESI 255 (744)
Q Consensus 240 ~~dg~i~iw~~~~~~~ 255 (744)
|.|-..++|.++.+.+
T Consensus 365 GdDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 365 GDDCYTRIWSLDSGHL 380 (425)
T ss_pred cCeeEEEEEecccCce
Confidence 9999999999998773
No 311
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.63 E-value=6.8e-05 Score=71.41 Aligned_cols=164 Identities=9% Similarity=0.105 Sum_probs=91.7
Q ss_pred CCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCc-ccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCc--eeeee
Q 004581 429 SGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPR-KLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE--LLHTF 505 (744)
Q Consensus 429 ~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~--~~~~~ 505 (744)
+..+.+.|.||.+.-+.+.. ++... ...+..+.. .......-+++..+..++-.+.+|.|+-.|+.... ....+
T Consensus 147 ~~~F~~lC~DGsl~~v~Ld~-~Gk~~--~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~ 223 (342)
T PF06433_consen 147 NRGFSMLCGDGSLLTVTLDA-DGKEA--QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPW 223 (342)
T ss_dssp TTEEEEEETTSCEEEEEETS-TSSEE--EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEE
T ss_pred CCceEEEecCCceEEEEECC-CCCEe--EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcc
Confidence 34566668888888888875 22222 122222211 11123344556666677778899999999986443 22222
Q ss_pred ccCcccccccCCCCCCceEEEEECCCCCEEEEEeC---C-------CcEEEEECCCcceEEEEecCCCCceeEEeecCCC
Q 004581 506 TPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC---F-------GDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQN 575 (744)
Q Consensus 506 ~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~---d-------g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~ 575 (744)
..... .+....--.+.-.-+++++..+.|.+--. + ..|.+||+.+.+.+..++..+ ++.+|+.+.++
T Consensus 224 ~~~t~-~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~--~~~Si~Vsqd~ 300 (342)
T PF06433_consen 224 SLLTD-AEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH--PIDSIAVSQDD 300 (342)
T ss_dssp ESS-H-HHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE--EESEEEEESSS
T ss_pred cccCc-cccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC--ccceEEEccCC
Confidence 21000 00000001123345778776655554321 1 168999999999988887544 78899999945
Q ss_pred CCeEEEEe-cCCeEEEEEcCCCcc
Q 004581 576 NNVLIITT-SSNQVYVFDVEAKQL 598 (744)
Q Consensus 576 ~~~l~~~~-~d~~v~vwd~~~~~~ 598 (744)
..+|+..+ .++.+.+||..+|++
T Consensus 301 ~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 301 KPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp S-EEEEEETTTTEEEEEETTT--E
T ss_pred CcEEEEEcCCCCeEEEEeCcCCcE
Confidence 45665554 578999999999975
No 312
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.63 E-value=1.2e-07 Score=87.14 Aligned_cols=161 Identities=17% Similarity=0.189 Sum_probs=117.6
Q ss_pred EEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCccc
Q 004581 9 FSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDE 88 (744)
Q Consensus 9 ~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (744)
|+.|.+..|-+-|++||.... |. ....|.++.|.-.+
T Consensus 228 fs~G~sqqv~L~nvetg~~qs-f~-sksDVfAlQf~~s~----------------------------------------- 264 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQS-FQ-SKSDVFALQFAGSD----------------------------------------- 264 (425)
T ss_pred ecccccceeEEEEeecccccc-cc-cchhHHHHHhcccC-----------------------------------------
Confidence 777888889999999876544 33 46778888888766
Q ss_pred ccccccccCCeEEEEecCCeEEEEEecCCC--ceeEeecccCccCcEEEEEEec-CCCEEEEEeCCCeEEEEEccCCce-
Q 004581 89 LHEQSVVEDRRVALACDDGCVRIYRITDSD--ELIYHRSLPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAKLGYE- 164 (744)
Q Consensus 89 ~~~~~~~~~~~la~~~~dg~i~iwd~~~~~--~~~~~~~~~~h~~~V~~~~~s~-dg~~l~t~~~dg~i~vwd~~~~~~- 164 (744)
+++..|+..|.|..+|+..+. .....+.+ -|...|+++..-. ++++|.+.+.+|.|.+||.+--++
T Consensus 265 ---------nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~ 334 (425)
T KOG2695|consen 265 ---------NLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCK 334 (425)
T ss_pred ---------CeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcc
Confidence 699999999999999998441 11111333 5889999998776 788999999999999999876655
Q ss_pred --EEEEEecCCCCCCCCceeEEEEEEe--c-CCeEEEEcCCCCEEEEeCCCcceEEEeeccc----cceeEEEEc
Q 004581 165 --IYRITVGLGGLGSGPELCIWSLLSL--R-CGTLVSADSTGSVQFWDSRHGTLLQAHSFHK----GDVNALAAA 230 (744)
Q Consensus 165 --~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~----~~v~~l~~~ 230 (744)
+..+. +|...-.-+-++ + .|.+++++.|.-.+||.++.|.++.++.... ..+.+++|.
T Consensus 335 ~~V~qYe--------GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 335 KSVMQYE--------GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred cceeeee--------cccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 66665 444332222222 2 3478999999999999999999998886532 234455553
No 313
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.58 E-value=1.9e-07 Score=59.37 Aligned_cols=39 Identities=26% Similarity=0.430 Sum_probs=37.1
Q ss_pred cceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEE
Q 004581 211 GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK 249 (744)
Q Consensus 211 ~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~ 249 (744)
|+++.++++|.+.|.+++|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
No 314
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.55 E-value=0.00041 Score=62.01 Aligned_cols=142 Identities=13% Similarity=0.138 Sum_probs=98.6
Q ss_pred CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCC
Q 004581 98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS 177 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 177 (744)
++++.|+..+.+.--|..++...- ...+ ..+|.+-+.- -|++++.|+..|.+.+.++++|.....+...
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~W-e~il---g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~------ 92 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIW-EAIL---GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL------ 92 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEe-ehhh---CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh------
Confidence 589999999999999988665432 1222 2344443333 5788999999999999999999988888731
Q ss_pred CCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEccc
Q 004581 178 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 252 (744)
Q Consensus 178 ~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~ 252 (744)
..-.+.+ ...+++ .+..|+.|++....|.++..++...+...+...+-+..|-...|+.+...|.+.--+...
T Consensus 93 -~~vk~~a-~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 93 -ETVKVRA-QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred -hhhccce-EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCC
Confidence 2222222 233455 899999999999999999999988776554445556666334566666666665544443
No 315
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.55 E-value=0.00014 Score=76.87 Aligned_cols=153 Identities=15% Similarity=0.196 Sum_probs=91.6
Q ss_pred CCeEEEEecCCeEEEEEecCCCceeEeecccC---ccCcEE--EEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEec
Q 004581 97 DRRVALACDDGCVRIYRITDSDELIYHRSLPR---VSGRVL--SVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVG 171 (744)
Q Consensus 97 ~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~---h~~~V~--~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~ 171 (744)
+..+..++.++.|.-.|..+++.+-....-.. +...+. .++.. ++..++.++.++.|..+|.++|+.+.+....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 45778888889999999987776532111110 000111 11111 2267888888999999999999999888742
Q ss_pred CCCCCCCCceeEE-EEEEecCCeEEEEc---------CCCCEEEEeCCCcceEEEeeccccc------------------
Q 004581 172 LGGLGSGPELCIW-SLLSLRCGTLVSAD---------STGSVQFWDSRHGTLLQAHSFHKGD------------------ 223 (744)
Q Consensus 172 ~~~~~~~~~~~v~-~~~~~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~h~~~------------------ 223 (744)
... .....+. +..+. ++.++.++ .+|.+...|..+|+.+..+......
T Consensus 140 ~~~---~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 140 DQV---PPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CCc---CcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 110 0000111 11222 35555554 3678999999999988777542110
Q ss_pred --e-eEEEEcCCCCEEEeecCCC------------------eEEEEEcccCc
Q 004581 224 --V-NALAAAPSHNRVFSTGSDG------------------QVILYKASCES 254 (744)
Q Consensus 224 --v-~~l~~~~~~~~l~~~~~dg------------------~i~iw~~~~~~ 254 (744)
| ...++.+.+.+++.++.++ .|.-+|..+++
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 1 1345555567788887665 57777777766
No 316
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.2e-05 Score=76.02 Aligned_cols=269 Identities=13% Similarity=0.089 Sum_probs=155.0
Q ss_pred EEEEeCCCcceEEEeeccccceeEEEEcCCCC-EEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccC
Q 004581 203 VQFWDSRHGTLLQAHSFHKGDVNALAAAPSHN-RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTH 281 (744)
Q Consensus 203 i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 281 (744)
+++.+..+.+..+-+..|...|..++|+|..+ ++..++.+.+|++.|+++... +.....+ .
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~-----------------vssy~a~-~ 236 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV-----------------VSSYIAY-N 236 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee-----------------eeheecc-C
Confidence 66666666666667788889999999999877 677899999999999998762 3444445 6
Q ss_pred cceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCC-----cccCCC
Q 004581 282 DVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSP-----HEICPA 356 (744)
Q Consensus 282 ~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~-----~~~~~~ 356 (744)
.+.+.+|. .....++..|-..|.|.+||++....... ....+.
T Consensus 237 ~~wSC~wD--------------------------------lde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv 284 (463)
T KOG1645|consen 237 QIWSCCWD--------------------------------LDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPV 284 (463)
T ss_pred Cceeeeec--------------------------------cCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcc
Confidence 78888875 22335899999999999999986443211 111111
Q ss_pred CCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 004581 357 PQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS 436 (744)
Q Consensus 357 ~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~ 436 (744)
.. ...+..-...+.+-+++.....+..|.+....... .++.++. ..+...+++..+-.+.+..+
T Consensus 285 ~~---i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~-----------p~vlele--~pG~cismqy~~~snh~l~t 348 (463)
T KOG1645|consen 285 HK---IAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECL-----------PCVLELE--PPGICISMQYHGVSNHLLLT 348 (463)
T ss_pred ee---ecccCccccccccceEEeeehhhhhhhhhccccCC-----------CcccccC--CCcceeeeeecCccceEEEE
Confidence 11 11111123445566777777777788877655331 1222222 12333344444433333322
Q ss_pred -cCC----ceE--EEEeecCCCCCceEEeeeccCCccc---ccccEEEEeeCCCEEEEE-eCCCcEEEEEccCCceeeee
Q 004581 437 -DHV----KPS--LFELKKGKVGQGEWIINKRQLPRKL---QFAHSMIFSYDSSQLIIA-GHDRRIYVVDVSSSELLHTF 505 (744)
Q Consensus 437 -~~~----~v~--l~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~i~~spd~~~l~~~-~~dg~i~v~d~~~~~~~~~~ 505 (744)
..+ .++ +-++.. ..+..+|..+........ ..-..+.-.++.++++.. +..+.+.+||..+++.++++
T Consensus 349 yRs~pn~p~~r~il~~~d~-~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l 427 (463)
T KOG1645|consen 349 YRSNPNFPQSRFILGRIDF-RDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTL 427 (463)
T ss_pred ecCCCCCccceeeeeeecc-ccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheeeec
Confidence 110 000 111111 223333333322111000 011122224566766554 44678999999999999999
Q ss_pred ccCcccccccCCCCCCceEEEEECC-CC-CEEEEEeCCCcEEEEECCC
Q 004581 506 TPCREEHDREIQPSEPPITKMFTSS-DG-QWLAAVNCFGDVYIFNLEI 551 (744)
Q Consensus 506 ~~~~~~~~~~~~~~~~~i~~l~~sp-dg-~~las~~~dg~i~iwd~~~ 551 (744)
.- ..+|..++... +| .||++- .|..++||..+.
T Consensus 428 ~~------------~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~es 462 (463)
T KOG1645|consen 428 AL------------SEPVLDICPNDTNGSSYLALL-TDDRVHIYKNES 462 (463)
T ss_pred cc------------CcceeecceeecCCcchhhhe-ecceEEEEecCC
Confidence 85 67788877544 33 356555 466788887653
No 317
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.52 E-value=1.6e-06 Score=90.30 Aligned_cols=180 Identities=15% Similarity=0.168 Sum_probs=137.1
Q ss_pred CCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCC
Q 004581 5 GGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS 84 (744)
Q Consensus 5 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (744)
...++.|+....+..+|+.+.+..+...--...|.-|.-+ +
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N--n------------------------------------- 187 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN--N------------------------------------- 187 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEec--C-------------------------------------
Confidence 4568888888999999999988877765444456555543 3
Q ss_pred CcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeC---------CCeEE
Q 004581 85 DSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS---------DGYIR 155 (744)
Q Consensus 85 ~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~---------dg~i~ 155 (744)
+.+.+|...|+|.+-|..+-+.. +++..|++.|..+.. .|+.|++++. |.-|+
T Consensus 188 -------------r~lf~G~t~G~V~LrD~~s~~~i---ht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~Fvk 249 (1118)
T KOG1275|consen 188 -------------RNLFCGDTRGTVFLRDPNSFETI---HTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVK 249 (1118)
T ss_pred -------------cEEEeecccceEEeecCCcCcee---eeeeccccceeeeec--cCCeEEEeecccccccccccchhh
Confidence 58999999999999998866665 999999999976555 6899999975 56789
Q ss_pred EEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCC-cce---EEEeeccccceeEEEE
Q 004581 156 SWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRH-GTL---LQAHSFHKGDVNALAA 229 (744)
Q Consensus 156 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~-~~~---~~~~~~h~~~v~~l~~ 229 (744)
|||++..+.+.-+..+. . -.-+.|+|.- +++.++..|...+-|..+ +.+ +..+......+..+.+
T Consensus 250 VYDLRmmral~PI~~~~--------~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDi 320 (1118)
T KOG1275|consen 250 VYDLRMMRALSPIQFPY--------G-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDI 320 (1118)
T ss_pred hhhhhhhhccCCccccc--------C-chhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEe
Confidence 99998877766555321 1 1446777765 789999999999998332 111 2233333455999999
Q ss_pred cCCCCEEEeecCCCeEEEEEc
Q 004581 230 APSHNRVFSTGSDGQVILYKA 250 (744)
Q Consensus 230 ~~~~~~l~~~~~dg~i~iw~~ 250 (744)
+++++.++.|..+|.|.+|.-
T Consensus 321 Ssn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 321 SSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cCCCceEEEecccCcEeeecC
Confidence 999999999999999999973
No 318
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=2.2e-05 Score=81.69 Aligned_cols=195 Identities=12% Similarity=0.113 Sum_probs=133.0
Q ss_pred CCCCCCeeEEecCCCeEEEEEccCCceeEEeeccCcc-eeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCcc
Q 004581 1 MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFS-IWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSE 79 (744)
Q Consensus 1 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~-i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (744)
+++.++.++.|+.+|.|.+.| ...+.++.++++... |..+-...+.
T Consensus 31 ~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~-------------------------------- 77 (933)
T KOG2114|consen 31 CSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQ-------------------------------- 77 (933)
T ss_pred EcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCc--------------------------------
Confidence 356788899999999999988 455666788888777 4333333332
Q ss_pred CCCCCCcccccccccccCCeEEEEecCC-----eEEEEEecCC--Cc-eeEe--ecccC-----ccCcEEEEEEecCCCE
Q 004581 80 SENDSDSDELHEQSVVEDRRVALACDDG-----CVRIYRITDS--DE-LIYH--RSLPR-----VSGRVLSVTWSADGNM 144 (744)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~la~~~~dg-----~i~iwd~~~~--~~-~~~~--~~~~~-----h~~~V~~~~~s~dg~~ 144 (744)
.+|++-++|+ .|+||+++.- .. ..+. +.+.. ...++.+++.|.+-+.
T Consensus 78 ------------------~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~ 139 (933)
T KOG2114|consen 78 ------------------NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKT 139 (933)
T ss_pred ------------------eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccE
Confidence 3566665554 5999999722 11 2222 22223 3567899999999999
Q ss_pred EEEEeCCCeEEEEEcc--CCceE-EEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcc-eEEEeec
Q 004581 145 LYSGSSDGYIRSWDAK--LGYEI-YRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGT-LLQAHSF 219 (744)
Q Consensus 145 l~t~~~dg~i~vwd~~--~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~-~~~~~~~ 219 (744)
+|.|-.+|.|..+.=. ..+-. ..+. .....+|+.+++..++ .++.......|.+|.+.... ....+..
T Consensus 140 Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~-------~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~ 212 (933)
T KOG2114|consen 140 IVCGFTNGLVICYKGDILRDRGSRQDYS-------HRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDN 212 (933)
T ss_pred EEEEecCcEEEEEcCcchhccccceeee-------ccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeecc
Confidence 9999999999988521 11111 1111 1466899999999999 43444456679999988433 2566888
Q ss_pred cccceeEEEEcCCCCEEEeecCCCeEEEEEcccCc
Q 004581 220 HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 254 (744)
Q Consensus 220 h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~ 254 (744)
|..++.|-.+++....+++++. .-+.+|+.....
T Consensus 213 ~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 213 NGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRG 246 (933)
T ss_pred CCccceeeecCCCCccEEEecC-ceEEEEcCCCcc
Confidence 8999999999987665777654 459999887654
No 319
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.46 E-value=0.0039 Score=66.80 Aligned_cols=400 Identities=12% Similarity=0.087 Sum_probs=216.7
Q ss_pred CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCC------CEEEEEeCCCeEEEEE-ccCCceEEEEEe
Q 004581 98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADG------NMLYSGSSDGYIRSWD-AKLGYEIYRITV 170 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg------~~l~t~~~dg~i~vwd-~~~~~~~~~~~~ 170 (744)
..++.++.++.+...++..+. +.. ..-..-+..|.|+.++|-| ++++.|..+..+.+.- ..+...+.....
T Consensus 500 sqVvvA~~~~~l~y~~i~~~~-l~e-~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l 577 (1096)
T KOG1897|consen 500 SQVVVAGGGLALFYLEIEDGG-LRE-VSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQL 577 (1096)
T ss_pred eEEEEecCccEEEEEEeeccc-eee-eeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeecc
Confidence 367777777777777776444 211 1112235689999999753 2678887765554433 333333333221
Q ss_pred cCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeC--CCcceEEEe--eccccceeEEEEcCCCCEEEeecCCCeE
Q 004581 171 GLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDS--RHGTLLQAH--SFHKGDVNALAAAPSHNRVFSTGSDGQV 245 (744)
Q Consensus 171 ~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~--~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~~~~~dg~i 245 (744)
+. ...+..|....|-.|+ +|+++..||.+.-+.+ .+|+.-..- ..-..++.--.|+..++.-+.+..|.-.
T Consensus 578 ~~----~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~ 653 (1096)
T KOG1897|consen 578 SG----EIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPT 653 (1096)
T ss_pred CC----CccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCE
Confidence 10 1234455555666655 8999999999876644 445433222 2224566666676655544444456666
Q ss_pred EEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCC
Q 004581 246 ILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGV 325 (744)
Q Consensus 246 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 325 (744)
.+|..+..-. ...+ .-..+..++- ++ . ....
T Consensus 654 viY~~n~kLv-----------------~spl--s~kev~~~c~---f~-----s----------------------~a~~ 684 (1096)
T KOG1897|consen 654 VIYSSNGKLV-----------------YSPL--SLKEVNHMCP---FN-----S----------------------DAYP 684 (1096)
T ss_pred EEEecCCcEE-----------------Eecc--chHHhhhhcc---cc-----c----------------------ccCC
Confidence 6665544221 0000 0011111110 00 0 0011
Q ss_pred cEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCe----------------EEEEEe
Q 004581 326 PMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCR----------------LDILSV 389 (744)
Q Consensus 326 ~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~----------------i~i~~~ 389 (744)
+.|+++. .+.+.+.-+...+.+...+. | .....+.+++.+....+...+.. +++++-
T Consensus 685 d~l~~~~-~~~l~i~tid~iqkl~irtv---p---l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~ 757 (1096)
T KOG1897|consen 685 DSLASAN-GGALTIGTIDEIQKLHIRTV---P---LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQ 757 (1096)
T ss_pred ceEEEec-CCceEEEEecchhhcceeee---c---CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecC
Confidence 2455554 44566666666555444331 1 11334455665544433322221 112211
Q ss_pred eccCCcccCCCCCCCCCcceEEEEEecCCC---CeEEEEEcCC-CCEEEEEc-----------CCceEEEEeecCCCCCc
Q 004581 390 RLENNVESRSSSGGHASTSLLVQVKSKASR---KIICSTISNS-GMLFAYSD-----------HVKPSLFELKKGKVGQG 454 (744)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~s~~-g~~la~~~-----------~~~v~l~~~~~~~~~~~ 454 (744)
++.+ .+...+..... .+.++.|..| +.++++|+ .|.+.+|.+.. .+..+
T Consensus 758 nTf~---------------vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~ 821 (1096)
T KOG1897|consen 758 NTFE---------------VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLE 821 (1096)
T ss_pred Ccee---------------EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCcee
Confidence 1111 11111222222 3444557777 67777653 35677777765 22222
Q ss_pred eEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCE
Q 004581 455 EWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQW 534 (744)
Q Consensus 455 ~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~ 534 (744)
+ +......+ .+.++.. -+|++||.- +..|++|++.+.+.++.-.. +..++..+...-.|..
T Consensus 822 ~--v~e~~v~G---av~aL~~-fngkllA~I--n~~vrLye~t~~~eLr~e~~-----------~~~~~~aL~l~v~gde 882 (1096)
T KOG1897|consen 822 L--VAETVVKG---AVYALVE-FNGKLLAGI--NQSVRLYEWTTERELRIECN-----------ISNPIIALDLQVKGDE 882 (1096)
T ss_pred e--eeeeeecc---ceeehhh-hCCeEEEec--CcEEEEEEccccceehhhhc-----------ccCCeEEEEEEecCcE
Confidence 2 22222222 3444332 267777644 45799999988866665555 7888999999999999
Q ss_pred EEEEeCCCcEEEEECC--CcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCC
Q 004581 535 LAAVNCFGDVYIFNLE--IQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 596 (744)
Q Consensus 535 las~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~ 596 (744)
+|+|+.-+.+.+.... .+.....-...+....+++.+-. ++.++.+..+|.+++-..++.
T Consensus 883 I~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~--~d~ylgae~~gNlf~v~~d~~ 944 (1096)
T KOG1897|consen 883 IAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILD--DDTYLGAENSGNLFTVRKDSD 944 (1096)
T ss_pred EEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEec--CceEEeecccccEEEEEecCC
Confidence 9999988877765554 44455555555667888888884 566777788888888766644
No 320
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=6.3e-05 Score=78.46 Aligned_cols=129 Identities=7% Similarity=0.013 Sum_probs=88.8
Q ss_pred CCCeEEEEEcCCCCEEEEE-cCCceEEEEeecC-CCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEE
Q 004581 418 SRKIICSTISNSGMLFAYS-DHVKPSLFELKKG-KVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVD 495 (744)
Q Consensus 418 ~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d 495 (744)
..++.+++++.+-+.+|+| .+|.|.++.-+.- +.+.+. .-......+|+.++|..|++.++.+.....|.+|.
T Consensus 125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~-----~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~ 199 (933)
T KOG2114|consen 125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ-----DYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYS 199 (933)
T ss_pred CCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce-----eeeccCCCCceeeEEecCCceeEEEEecceeEEEE
Confidence 4678899999999999998 8888888764320 112211 11122234899999999998844444455699999
Q ss_pred ccCCc-eeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCC
Q 004581 496 VSSSE-LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEG 563 (744)
Q Consensus 496 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~ 563 (744)
+.... ....+.. |...+.+-.+++....+++++.. .|.+|+.+...+...+...+.
T Consensus 200 l~gr~p~~~~ld~-----------~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 200 LSGRTPSLKVLDN-----------NGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFEVGEK 256 (933)
T ss_pred ecCCCcceeeecc-----------CCccceeeecCCCCccEEEecCc-eEEEEcCCCcceeeeecCCCe
Confidence 97333 2444555 78888999998877656666544 499999998888777775453
No 321
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.42 E-value=0.0013 Score=66.58 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=60.6
Q ss_pred cccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEE
Q 004581 469 FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFN 548 (744)
Q Consensus 469 ~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd 548 (744)
.+.+++++|+...|+.|+.||.|.+||...+....+ + ..-..+.++|+|+|.++++|+..|.+.+||
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k------------a~~~P~~iaWHp~gai~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K------------AEFIPTLIAWHPDGAIFVVGSEQGELQCFD 327 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e------------ecccceEEEEcCCCcEEEEEcCCceEEEEE
Confidence 799999999999999999999999999876533222 2 355688999999999999999999999999
Q ss_pred CCCc
Q 004581 549 LEIQ 552 (744)
Q Consensus 549 ~~~~ 552 (744)
+.-.
T Consensus 328 ~ALs 331 (545)
T PF11768_consen 328 MALS 331 (545)
T ss_pred eecC
Confidence 9643
No 322
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=5.7e-05 Score=78.14 Aligned_cols=135 Identities=19% Similarity=0.160 Sum_probs=104.2
Q ss_pred cCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCC
Q 004581 96 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGL 175 (744)
Q Consensus 96 ~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 175 (744)
.+..+|.|+.+|.|++++.. +.. .+...|... ..+|.+++||+.||.|.|-.+-+.+....+.
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~-~~~----~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d------ 110 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQ-GNP----KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD------ 110 (846)
T ss_pred hcceeeeccccceEEEEecC-Ccc----ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe------
Confidence 35699999999999999986 222 223345444 6789999999999999999999988887775
Q ss_pred CCCCceeEEEEEEecC------CeEEEEcCCCCEEEEeCCC-cceEE-EeeccccceeEEEEcCCCCEEEeecCCCeEEE
Q 004581 176 GSGPELCIWSLLSLRC------GTLVSADSTGSVQFWDSRH-GTLLQ-AHSFHKGDVNALAAAPSHNRVFSTGSDGQVIL 247 (744)
Q Consensus 176 ~~~~~~~v~~~~~~~~------~~l~s~~~dg~i~vwd~~~-~~~~~-~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~i 247 (744)
...++.+++++|+ +++++|+..| +.++.-.- |.... .+..-.++|.++.|. |++++=++.+| |++
T Consensus 111 ---f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~v 183 (846)
T KOG2066|consen 111 ---FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKV 183 (846)
T ss_pred ---cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEE
Confidence 6678999999998 2799999999 77765332 11111 355567899999997 77888887777 999
Q ss_pred EEcccCc
Q 004581 248 YKASCES 254 (744)
Q Consensus 248 w~~~~~~ 254 (744)
||....+
T Consensus 184 yd~~~~~ 190 (846)
T KOG2066|consen 184 YDTPTRQ 190 (846)
T ss_pred Eeccccc
Confidence 9998865
No 323
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.40 E-value=5e-05 Score=77.48 Aligned_cols=117 Identities=19% Similarity=0.184 Sum_probs=88.2
Q ss_pred ccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEe
Q 004581 129 VSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWD 207 (744)
Q Consensus 129 h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd 207 (744)
|...|.--+++..+++++.|+.-|.+.+|+-..|... .++.+ +....+..+..+++. ++++|+..|.|.++-
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~------~~~~~~~~~~vs~~e~lvAagt~~g~V~v~q 104 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNE------GATGITCVRSVSSVEYLVAAGTASGRVSVFQ 104 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhh-ccccc------CccceEEEEEecchhHhhhhhcCCceEEeeh
Confidence 4456666778888999999999999999997665543 33321 344556666677777 778888899999998
Q ss_pred CCCcce---EEE--e-eccccceeEEEEcCCCCEEEeecCCCeEEEEEccc
Q 004581 208 SRHGTL---LQA--H-SFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 252 (744)
Q Consensus 208 ~~~~~~---~~~--~-~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~ 252 (744)
+..+.. ... . +.|...|++++|++++..+++|...|+|..-.++.
T Consensus 105 l~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 105 LNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 775322 111 1 23778999999999999999999999999988877
No 324
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.36 E-value=2.2e-05 Score=81.17 Aligned_cols=108 Identities=13% Similarity=0.120 Sum_probs=88.7
Q ss_pred EEEEecCCCEEEEEeC----CCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCC
Q 004581 135 SVTWSADGNMLYSGSS----DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSR 209 (744)
Q Consensus 135 ~~~~s~dg~~l~t~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~ 209 (744)
-..|+|...++|+++- .|.|-|+- ++|++.+... .+-.+.+++|+|.. .|+.|-..|.+.+|...
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt---------~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~ 89 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT---------YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTN 89 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc---------cceehhhhccChHHHHHhhccccceeEEEecC
Confidence 3568898888888763 57888884 5777554443 34456779999999 78899999999999998
Q ss_pred CcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEccc
Q 004581 210 HGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 252 (744)
Q Consensus 210 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~ 252 (744)
+.+.-.....|+.+|..+.||++|..++++..-|.+.+|....
T Consensus 90 ~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 90 TTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred CceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 7776666678999999999999999999999999999998874
No 325
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.35 E-value=7.1e-05 Score=70.44 Aligned_cols=207 Identities=16% Similarity=0.180 Sum_probs=134.3
Q ss_pred CCCCCCeeEEe-----cCCCeEEEEEcc-CCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCC
Q 004581 1 MGLPGGRLFSS-----SIDGSVSEWDLY-DLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDD 74 (744)
Q Consensus 1 ~~~~~~~l~~~-----~~d~~i~iwd~~-~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (744)
++++|.+|++. ...|.|-|||.. +.+.+..+..|.-.-..+.+.|||+.|+++... ..+..
T Consensus 58 fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGG--I~Thp----------- 124 (305)
T PF07433_consen 58 FSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGG--IETHP----------- 124 (305)
T ss_pred EcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCC--CccCc-----------
Confidence 46677777775 557899999999 778888999988888889999999888766221 10000
Q ss_pred CcCccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecc--cCccCcEEEEEEecCCCEEEEEeCCC
Q 004581 75 HETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSL--PRVSGRVLSVTWSADGNMLYSGSSDG 152 (744)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~--~~h~~~V~~~~~s~dg~~l~t~~~dg 152 (744)
. .....|-..+-+-.+..-|..+++.+.. ..+ .-|+-.|..+++.++|..++..-..|
T Consensus 125 -d------------------~GR~kLNl~tM~psL~~ld~~sG~ll~q-~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg 184 (305)
T PF07433_consen 125 -D------------------SGRAKLNLDTMQPSLVYLDARSGALLEQ-VELPPDLHQLSIRHLAVDGDGTVAFAMQYQG 184 (305)
T ss_pred -c------------------cCceecChhhcCCceEEEecCCCceeee-eecCccccccceeeEEecCCCcEEEEEecCC
Confidence 0 0001333444555666777776665532 455 45888999999999998776654332
Q ss_pred -------eEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eE-EEEcCCCCEEEEeCCCcceEEEeeccccc
Q 004581 153 -------YIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TL-VSADSTGSVQFWDSRHGTLLQAHSFHKGD 223 (744)
Q Consensus 153 -------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~s~~~dg~i~vwd~~~~~~~~~~~~h~~~ 223 (744)
-|-+++ .++.+..+..+. .........+-+|++++++ .+ +++=.-+.+.+||..+++.+.... -.+
T Consensus 185 ~~~~~~PLva~~~--~g~~~~~~~~p~-~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~--l~D 259 (305)
T PF07433_consen 185 DPGDAPPLVALHR--RGGALRLLPAPE-EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP--LPD 259 (305)
T ss_pred CCCccCCeEEEEc--CCCcceeccCCh-HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc--cCc
Confidence 233443 333333333211 1112455789999999998 44 455567889999999999987765 356
Q ss_pred eeEEEEcCCCCEEEeecCCCeEEE
Q 004581 224 VNALAAAPSHNRVFSTGSDGQVIL 247 (744)
Q Consensus 224 v~~l~~~~~~~~l~~~~~dg~i~i 247 (744)
+..++-.+++ ++++.+ .|.+..
T Consensus 260 ~cGva~~~~~-f~~ssG-~G~~~~ 281 (305)
T PF07433_consen 260 ACGVAPTDDG-FLVSSG-QGQLIR 281 (305)
T ss_pred eeeeeecCCc-eEEeCC-CccEEE
Confidence 7788887777 455543 454433
No 326
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.34 E-value=0.0032 Score=60.33 Aligned_cols=81 Identities=19% Similarity=0.268 Sum_probs=57.5
Q ss_pred cccEEEEeeCCCEEEEEeC---CC-------cEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCC-EEEE
Q 004581 469 FAHSMIFSYDSSQLIIAGH---DR-------RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ-WLAA 537 (744)
Q Consensus 469 ~v~~i~~spd~~~l~~~~~---dg-------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~-~las 537 (744)
.-.-+++++..++|.+.-. +| .|.++|+++++.+..+.. ..++.+|++|.|.+ +|.+
T Consensus 239 G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l------------~~~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 239 GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL------------EHPIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE------------EEEESEEEEESSSS-EEEE
T ss_pred ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC------------CCccceEEEccCCCcEEEE
Confidence 4456788877776665422 12 588999999999999985 55688999999887 5555
Q ss_pred Ee-CCCcEEEEECCCcceEEEEecC
Q 004581 538 VN-CFGDVYIFNLEIQRQHWFISRL 561 (744)
Q Consensus 538 ~~-~dg~i~iwd~~~~~~~~~~~~~ 561 (744)
.+ .++.|.+||..+++....+...
T Consensus 307 ~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 307 LSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EETTTTEEEEEETTT--EEEEE---
T ss_pred EcCCCCeEEEEeCcCCcEEeehhcc
Confidence 44 5789999999999998887654
No 327
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.29 E-value=5.8e-07 Score=92.86 Aligned_cols=137 Identities=17% Similarity=0.175 Sum_probs=101.6
Q ss_pred CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCC--eEEEEEccC-CceEEEEEecCCC
Q 004581 98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDG--YIRSWDAKL-GYEIYRITVGLGG 174 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg--~i~vwd~~~-~~~~~~~~~~~~~ 174 (744)
+.|++|+..|.|++|++.+|... ....+|..+|+.+.=+.||..+++.+.-. -..+|++.+ +...+.+.
T Consensus 1114 ~hL~vG~~~Geik~~nv~sG~~e---~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~----- 1185 (1516)
T KOG1832|consen 1114 NHLAVGSHAGEIKIFNVSSGSME---ESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD----- 1185 (1516)
T ss_pred ceEEeeeccceEEEEEccCcccc---ccccccccccccccccCCcceeeeeccccCchHHHhccccccCcccccc-----
Confidence 69999999999999999988776 77889999999999999999888766533 468899854 44445544
Q ss_pred CCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEe-ec---cccceeEEEEcCCCCEEEeecCCCeEEEEE
Q 004581 175 LGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAH-SF---HKGDVNALAAAPSHNRVFSTGSDGQVILYK 249 (744)
Q Consensus 175 ~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~-~~---h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~ 249 (744)
.-.++.|+... .-+.|+......+||++++..+.++ .. ....-.+..|+|+..+++ .|| .+||
T Consensus 1186 -------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWD 1253 (1516)
T KOG1832|consen 1186 -------EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWD 1253 (1516)
T ss_pred -------ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeee
Confidence 23457787665 3345555567899999998877663 21 222337889999988776 355 5899
Q ss_pred cccCc
Q 004581 250 ASCES 254 (744)
Q Consensus 250 ~~~~~ 254 (744)
.+..+
T Consensus 1254 vR~~~ 1258 (1516)
T KOG1832|consen 1254 VRIPE 1258 (1516)
T ss_pred eccHH
Confidence 88754
No 328
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.27 E-value=0.00014 Score=74.34 Aligned_cols=138 Identities=22% Similarity=0.163 Sum_probs=97.1
Q ss_pred CCCCeeEEecCCCeEEEEEccCCceeE-EeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCC
Q 004581 3 LPGGRLFSSSIDGSVSEWDLYDLKQKI-VLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESE 81 (744)
Q Consensus 3 ~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (744)
..++.|+.|+.-|.+.+|+=.++..+. ...+-.+.+....+|++.
T Consensus 43 st~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e---------------------------------- 88 (726)
T KOG3621|consen 43 ATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE---------------------------------- 88 (726)
T ss_pred cCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh----------------------------------
Confidence 346789999999999999977765443 333445566667788877
Q ss_pred CCCCcccccccccccCCeEEEEecCCeEEEEEecCCCc--eeEeeccc-CccCcEEEEEEecCCCEEEEEeCCCeEEEEE
Q 004581 82 NDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDE--LIYHRSLP-RVSGRVLSVTWSADGNMLYSGSSDGYIRSWD 158 (744)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~--~~~~~~~~-~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd 158 (744)
.++|+|+..|.|.++-+..+.. +.+...+. .|..+|+|++|++|+..|++|...|.|..-.
T Consensus 89 ----------------~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~ 152 (726)
T KOG3621|consen 89 ----------------YLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTE 152 (726)
T ss_pred ----------------HhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEE
Confidence 4778889999999998875332 22223332 4788999999999999999999999999988
Q ss_pred ccCC----ceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEc
Q 004581 159 AKLG----YEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSAD 198 (744)
Q Consensus 159 ~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~ 198 (744)
+.+. ...+.+. .....|..+.+...-.|++..
T Consensus 153 L~s~~~~~~~~q~il--------~~ds~IVQlD~~q~~LLVStl 188 (726)
T KOG3621|consen 153 LDSRQAFLSKSQEIL--------SEDSEIVQLDYLQSYLLVSTL 188 (726)
T ss_pred echhhhhccccceee--------ccCcceEEeecccceehHhhh
Confidence 8761 1112222 356777777776443444443
No 329
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.27 E-value=0.00026 Score=76.99 Aligned_cols=144 Identities=16% Similarity=0.257 Sum_probs=93.6
Q ss_pred cccEEEEeeCCCEEEEE-----eCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEe---C
Q 004581 469 FAHSMIFSYDSSQLIIA-----GHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN---C 540 (744)
Q Consensus 469 ~v~~i~~spd~~~l~~~-----~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~---~ 540 (744)
.-++|.|--||+++|+. .....|+|||.+ |.+-.+-.. ..+.-.+++|-|.|.++|+.- .
T Consensus 197 ~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~-----------~~~l~~~LsWkPsgs~iA~iq~~~s 264 (1265)
T KOG1920|consen 197 HKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEP-----------VEGLQHSLSWKPSGSLIAAIQCKTS 264 (1265)
T ss_pred CCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCc-----------ccccccceeecCCCCeEeeeeecCC
Confidence 45679999999999984 223789999976 554333332 344556899999999999864 4
Q ss_pred CCcEEEEECCCcceEE-EEecC-CCCceeEEeecCCCCCeEEEE---ecCCeEEEEEcCCCccccccccccCCccccccc
Q 004581 541 FGDVYIFNLEIQRQHW-FISRL-EGASVTAAGFPPQNNNVLIIT---TSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQE 615 (744)
Q Consensus 541 dg~i~iwd~~~~~~~~-~~~~~-~~~~v~~l~~sp~~~~~l~~~---~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~ 615 (744)
|+.|.+|.-++.+.-. .++-. ....+..++|+. ++..||+. .....|++|-+.+-. |.......++...
T Consensus 265 d~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~~~v~lwt~~Nyh---WYLKq~l~~~~~~-- 338 (1265)
T KOG1920|consen 265 DSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS-NSDILAVVTSNLENSLVQLWTTGNYH---WYLKQELQFSQKA-- 338 (1265)
T ss_pred CCcEEEEecCCccccccccCCcccccchheeeecC-CCCceeeeecccccceEEEEEecCeE---EEEEEEEeccccc--
Confidence 5579999877655421 12211 123489999999 99999984 344469999988764 4333222222211
Q ss_pred CCCceEEEEeCCCCCCcEEEEE
Q 004581 616 FPGEVIGLSFSPSPSSSSVIIY 637 (744)
Q Consensus 616 ~~~~v~~i~fspdg~~~~~~~~ 637 (744)
.+.|+|- .+..+.++
T Consensus 339 ------~~~W~p~-~~~~L~v~ 353 (1265)
T KOG1920|consen 339 ------LLMWDPV-TEKTLHVL 353 (1265)
T ss_pred ------cccccCC-CceeEEEE
Confidence 1777773 55555555
No 330
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.26 E-value=1.4e-06 Score=90.08 Aligned_cols=119 Identities=19% Similarity=0.193 Sum_probs=94.1
Q ss_pred ecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-e-EEEEcCCC
Q 004581 124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-T-LVSADSTG 201 (744)
Q Consensus 124 ~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~-l~s~~~dg 201 (744)
+.|..|....+|++|+-+.+.|+.|+..|.|+++++.+|....... .|...|+-+.-+.|| . |.+++...
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n--------cH~SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN--------CHQSAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccc--------ccccccccccccCCcceeeeeccccC
Confidence 6777889999999999999999999999999999999998877776 799999999999999 4 44444333
Q ss_pred -CEEEEeCCC-cceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCc
Q 004581 202 -SVQFWDSRH-GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 254 (744)
Q Consensus 202 -~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~ 254 (744)
-..+|++.+ +...+++.. -.++.|+.....-+.|+.-....+||+.++.
T Consensus 1167 PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~ 1217 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCS 1217 (1516)
T ss_pred chHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCc
Confidence 578999875 555666654 3578888765555556565678999998865
No 331
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=5.1e-05 Score=78.52 Aligned_cols=185 Identities=12% Similarity=0.157 Sum_probs=120.3
Q ss_pred CCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEcc
Q 004581 419 RKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS 497 (744)
Q Consensus 419 ~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~ 497 (744)
..+.|++++ +++++.| -.|.+++++.... .. . ...|... .-+|.++++++.||+|.|..+.
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~---~~------~-~~~~s~~------~~~Gey~asCS~DGkv~I~sl~ 101 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGN---PK------T-NFDHSSS------ILEGEYVASCSDDGKVVIGSLF 101 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCc---cc------c-ccccccc------ccCCceEEEecCCCcEEEeecc
Confidence 334555554 5788887 5568888877541 11 1 1111111 4589999999999999999999
Q ss_pred CCceeeeeccCcccccccCCCCCCceEEEEECCC-----CCEEEEEeCCCcEEEEECCCc--ceEEEEecCCCCceeEEe
Q 004581 498 SSELLHTFTPCREEHDREIQPSEPPITKMFTSSD-----GQWLAAVNCFGDVYIFNLEIQ--RQHWFISRLEGASVTAAG 570 (744)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-----g~~las~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~l~ 570 (744)
+.+...++. ...++.+++++|| .+.+++|+..| +.++.-.=. +....+.. ..++|.++.
T Consensus 102 ~~~~~~~~d------------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~-~eG~I~~i~ 167 (846)
T KOG2066|consen 102 TDDEITQYD------------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE-GEGPIHSIK 167 (846)
T ss_pred CCccceeEe------------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec-CccceEEEE
Confidence 888888777 4778999999998 56889999888 888765311 11112222 237999999
Q ss_pred ecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCCCCCcEEEEEcC-ceEEEEe
Q 004581 571 FPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSA-RAMCVID 646 (744)
Q Consensus 571 ~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~-~~~~~~~ 646 (744)
| .|+++|-++++| |+|||+.+++... + ...+.......---..+.|.++ ...++-|++ .++|.|.
T Consensus 168 W---~g~lIAWand~G-v~vyd~~~~~~l~----~-i~~p~~~~R~e~fpphl~W~~~--~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 168 W---RGNLIAWANDDG-VKVYDTPTRQRLT----N-IPPPSQSVRPELFPPHLHWQDE--DRLVIGWGDSVKICSIK 233 (846)
T ss_pred e---cCcEEEEecCCC-cEEEeccccceee----c-cCCCCCCCCcccCCCceEecCC--CeEEEecCCeEEEEEEe
Confidence 9 579999999888 9999999885211 0 0111111111223456788775 344444543 4577777
No 332
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.22 E-value=0.00059 Score=70.77 Aligned_cols=158 Identities=16% Similarity=0.060 Sum_probs=103.3
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEc---CCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEE
Q 004581 409 LLVQVKSKASRKIICSTISNSGMLFAYSD---HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA 485 (744)
Q Consensus 409 ~~~~~~~~~~~~i~~~~~s~~g~~la~~~---~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~ 485 (744)
...++... .+...++++|+|+++.++. .....+-.+...+.. .+.-+. .-..-++.++|++...
T Consensus 227 V~~qV~Vd--gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d-~~vvfn---------i~~iea~vkdGK~~~V- 293 (635)
T PRK02888 227 VAWQVMVD--GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD-WVVVFN---------IARIEEAVKAGKFKTI- 293 (635)
T ss_pred EEEEEEeC--CCcccceECCCCCEEEEeccCcccCcceeeeccccCc-eEEEEc---------hHHHHHhhhCCCEEEE-
Confidence 45555554 3567788999999987753 211122222110000 000000 0001134568887776
Q ss_pred eCCCcEEEEEccC-----CceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEe-CCCcEEEEECCCcce-----
Q 004581 486 GHDRRIYVVDVSS-----SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN-CFGDVYIFNLEIQRQ----- 554 (744)
Q Consensus 486 ~~dg~i~v~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~-~dg~i~iwd~~~~~~----- 554 (744)
.++.|.+.|..+ .+.+..+.. ......+++||||+++++++ .+.+|.|+|+++.+.
T Consensus 294 -~gn~V~VID~~t~~~~~~~v~~yIPV------------GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 294 -GGSKVPVVDGRKAANAGSALTRYVPV------------PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred -CCCEEEEEECCccccCCcceEEEEEC------------CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 367899999987 456666664 66678999999999988776 488999999987653
Q ss_pred -------EEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCC
Q 004581 555 -------HWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 595 (744)
Q Consensus 555 -------~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~ 595 (744)
...+.. +..+...+|.+ +|+...+-.-|.+|..||+..
T Consensus 361 ~~~~~~vvaevev--GlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPEL--GLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeecc--CCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 233322 34677889999 888888888999999999986
No 333
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.16 E-value=0.0067 Score=64.29 Aligned_cols=154 Identities=14% Similarity=0.112 Sum_probs=91.7
Q ss_pred CeEEEEecCCeEEEEEecCCCceeEeecccCcc---CcEE-EEEEecCCCEEEEEe---------CCCeEEEEEccCCce
Q 004581 98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVS---GRVL-SVTWSADGNMLYSGS---------SDGYIRSWDAKLGYE 164 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~---~~V~-~~~~s~dg~~l~t~~---------~dg~i~vwd~~~~~~ 164 (744)
..++.++.++.|+-+|..+++.+-.. .+..+. ..+. +..+. + ..++.++ .++.+..+|.++|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~-~~~~~~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKF-GNNDQVPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeee-cCCCCcCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 47888889999999999888776321 222220 0011 12222 2 4454443 368899999999999
Q ss_pred EEEEEecCCCC-CCC-----------CceeEE-EEEEec-CCeEEEEcCCC------------------CEEEEeCCCcc
Q 004581 165 IYRITVGLGGL-GSG-----------PELCIW-SLLSLR-CGTLVSADSTG------------------SVQFWDSRHGT 212 (744)
Q Consensus 165 ~~~~~~~~~~~-~~~-----------~~~~v~-~~~~~~-~~~l~s~~~dg------------------~i~vwd~~~~~ 212 (744)
+.++....... ... ....++ +.++.+ .++++.++.++ .|.-.|.++|+
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 98887521100 000 001122 233443 34777777665 69999999999
Q ss_pred eEEEeecccccee------EEEEc----CCCC---EEEeecCCCeEEEEEcccCc
Q 004581 213 LLQAHSFHKGDVN------ALAAA----PSHN---RVFSTGSDGQVILYKASCES 254 (744)
Q Consensus 213 ~~~~~~~h~~~v~------~l~~~----~~~~---~l~~~~~dg~i~iw~~~~~~ 254 (744)
.+..++.-..... ...+. -++. .++.++.+|.+..+|..+++
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~ 322 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGK 322 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCc
Confidence 9877653211111 01111 1333 57788889999999999887
No 334
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.15 E-value=0.019 Score=61.78 Aligned_cols=469 Identities=15% Similarity=0.087 Sum_probs=223.7
Q ss_pred CCCCeeEEecCCCeEEEEEccCCcee-------EEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCC
Q 004581 3 LPGGRLFSSSIDGSVSEWDLYDLKQK-------IVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDH 75 (744)
Q Consensus 3 ~~~~~l~~~~~d~~i~iwd~~~~~~~-------~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (744)
.+++.|++|+..|.=.+-.+.+-.-. .++. .-++|..|+.-...+..
T Consensus 315 L~ng~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~------------------------- 368 (1096)
T KOG1897|consen 315 LDNGVLFVGSRFGDSQLIKLNTEPDVGSYVVILETFV-NLGPIVDMCVVDLDRQG------------------------- 368 (1096)
T ss_pred ccCceEEEeccCCceeeEEccccCCCCchhhhhhhcc-cccceeeEEEEeccccC-------------------------
Confidence 57888999998887777766553222 2333 34677777765433110
Q ss_pred cCccCCCCCCcccccccccccCCeEEEE---ecCCeEEEEEecCCCceeEeecccCccCcEEEEE--Eec--CCCEEEEE
Q 004581 76 ETSESENDSDSDELHEQSVVEDRRVALA---CDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVT--WSA--DGNMLYSG 148 (744)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~la~~---~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~--~s~--dg~~l~t~ 148 (744)
...++++ ..||+++|..-.-+-.......+.| -..+..+. +++ |. +|+.+
T Consensus 369 ---------------------q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvls 425 (1096)
T KOG1897|consen 369 ---------------------QGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLS 425 (1096)
T ss_pred ---------------------CceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEE
Confidence 0244444 3689999987542211111234444 33566666 433 33 55544
Q ss_pred eCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEec-CC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeE
Q 004581 149 SSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLR-CG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNA 226 (744)
Q Consensus 149 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 226 (744)
-.+ .-++..+. ++....... +.......+..+. .+ .|+-.. ...||+++-. ..+..+.. .+.++.
T Consensus 426 f~~-eTrvl~i~-~e~ee~~~~-------gf~~~~~Tif~S~i~g~~lvQvT-s~~iRl~ss~--~~~~~W~~-p~~~ti 492 (1096)
T KOG1897|consen 426 FIS-ETRVLNIS-EEVEETEDP-------GFSTDEQTIFCSTINGNQLVQVT-SNSIRLVSSA--GLRSEWRP-PGKITI 492 (1096)
T ss_pred ecc-ceEEEEEc-cceEEeccc-------cccccCceEEEEccCCceEEEEe-cccEEEEcch--hhhhcccC-CCceEE
Confidence 333 44555552 221111110 1112222222221 11 222222 2346666544 23334443 345555
Q ss_pred EEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCccccccc
Q 004581 227 LAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRS 306 (744)
Q Consensus 227 l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~ 306 (744)
...+.+...++.++.++.+...++..... ...........|.|+.++ |-+..
T Consensus 493 ~~~~~n~sqVvvA~~~~~l~y~~i~~~~l----------------~e~~~~~~e~evaCLDis---------p~~d~--- 544 (1096)
T KOG1897|consen 493 GVVSANASQVVVAGGGLALFYLEIEDGGL----------------REVSHKEFEYEVACLDIS---------PLGDA--- 544 (1096)
T ss_pred EEEeecceEEEEecCccEEEEEEeeccce----------------eeeeeheecceeEEEecc---------cCCCC---
Confidence 55555666788887777777777665441 011223346778888886 32210
Q ss_pred CCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEE--EeCCeE
Q 004581 307 RGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLV--QYSCRL 384 (744)
Q Consensus 307 ~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~--~~~~~i 384 (744)
....++++.|..+..+.+.-.........+.....+.. | ..+--..+-.|..+|. .+++.+
T Consensus 545 ---------------~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~i-P-RSIl~~~~e~d~~yLlvalgdG~l 607 (1096)
T KOG1897|consen 545 ---------------PNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEII-P-RSILLTTFEGDIHYLLVALGDGAL 607 (1096)
T ss_pred ---------------CCcceEEEEEeecceEEEEEECCCcceeeeeccCCCcc-c-hheeeEEeeccceEEEEEcCCceE
Confidence 01123677777666444332221111111110001100 1 1122223333344443 456666
Q ss_pred EEEEeeccCCcccCCC--CCCCCCcceEEEEEecCCCCeEEEE------EcCCC------------------------CE
Q 004581 385 DILSVRLENNVESRSS--SGGHASTSLLVQVKSKASRKIICST------ISNSG------------------------ML 432 (744)
Q Consensus 385 ~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~------~s~~g------------------------~~ 432 (744)
.-+.++..++...... ..| ..|..+.++.......+.++. ++.++ ..
T Consensus 608 ~~fv~d~~tg~lsd~Kk~~lG-t~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~ 686 (1096)
T KOG1897|consen 608 LYFVLDINTGQLSDRKKVTLG-TQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDS 686 (1096)
T ss_pred EEEEEEcccceEccccccccC-CCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCce
Confidence 6666665554432221 112 223455566555444443322 11122 34
Q ss_pred EEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCC--------------CcEEEEEccC
Q 004581 433 FAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD--------------RRIYVVDVSS 498 (744)
Q Consensus 433 la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~d--------------g~i~v~d~~~ 498 (744)
++.+..+.+++..++. -.+ ..+++..+. .....+++.+....+++.+.. ..++++|-.+
T Consensus 687 l~~~~~~~l~i~tid~---iqk-l~irtvpl~---~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nT 759 (1096)
T KOG1897|consen 687 LASANGGALTIGTIDE---IQK-LHIRTVPLG---ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNT 759 (1096)
T ss_pred EEEecCCceEEEEecc---hhh-cceeeecCC---CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCc
Confidence 5556666666666653 111 112222221 256677776644444443221 1356666655
Q ss_pred CceeeeeccCcccccccCCCCCCceEEEEECCC-CCEEEEEeC----------CCcEEEEECCCcceEEEE-ecCCCCce
Q 004581 499 SELLHTFTPCREEHDREIQPSEPPITKMFTSSD-GQWLAAVNC----------FGDVYIFNLEIQRQHWFI-SRLEGASV 566 (744)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-g~~las~~~----------dg~i~iwd~~~~~~~~~~-~~~~~~~v 566 (744)
.+.+...+-... ...-.|.++.|..| +.++++|.. .|.|.||.+...+.+..+ ...-.+.|
T Consensus 760 f~vl~~hef~~~-------E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav 832 (1096)
T KOG1897|consen 760 FEVLSSHEFERN-------ETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAV 832 (1096)
T ss_pred eeEEeecccccc-------ceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccce
Confidence 554433221100 01233555568888 778888753 588999998873333222 11122566
Q ss_pred eEEeecCCCCCeEEEEecCCeEEEEEcCCCc
Q 004581 567 TAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 597 (744)
Q Consensus 567 ~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~ 597 (744)
.++.-- +|++||. -...|++|+..+++
T Consensus 833 ~aL~~f--ngkllA~--In~~vrLye~t~~~ 859 (1096)
T KOG1897|consen 833 YALVEF--NGKLLAG--INQSVRLYEWTTER 859 (1096)
T ss_pred eehhhh--CCeEEEe--cCcEEEEEEccccc
Confidence 666543 4666554 45689999998883
No 335
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.15 E-value=0.0065 Score=64.53 Aligned_cols=115 Identities=18% Similarity=0.140 Sum_probs=69.6
Q ss_pred CCeEEEEecCCeEEEEEecCCCceeEeecccCcc--CcE-------EEEEEecCCCEEEEEeCCCeEEEEEccCCceEEE
Q 004581 97 DRRVALACDDGCVRIYRITDSDELIYHRSLPRVS--GRV-------LSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYR 167 (744)
Q Consensus 97 ~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~--~~V-------~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~ 167 (744)
+..+.+++.++.|+-.|..+++.+-... ..... ..+ ..+++. +..++.++.|+.|...|.++|+.+..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~-~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYD-PKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEec-CCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEee
Confidence 4578888888888888988887663211 11110 011 112232 34677788899999999999999988
Q ss_pred EEecCCCCCCCCceeEEEEEEecCCeEEEEcC------CCCEEEEeCCCcceEEEee
Q 004581 168 ITVGLGGLGSGPELCIWSLLSLRCGTLVSADS------TGSVQFWDSRHGTLLQAHS 218 (744)
Q Consensus 168 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~ 218 (744)
...... .....+.+.-..-++.++.+.. +|.|..+|.++|+.+..+.
T Consensus 146 ~~~~~~----~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 146 KKNGDY----KAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred cccccc----cccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 763100 0001111111112556665543 6889999999999886654
No 336
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.11 E-value=2.5e-05 Score=78.46 Aligned_cols=74 Identities=20% Similarity=0.280 Sum_probs=62.6
Q ss_pred CccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEE
Q 004581 128 RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFW 206 (744)
Q Consensus 128 ~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vw 206 (744)
.....|.|++++|+.+.|+.|+.||.|++||...+... .. ...-....++|+|+| .+++|+..|.+++|
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~--------ka~~~P~~iaWHp~gai~~V~s~qGelQ~F 326 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LA--------KAEFIPTLIAWHPDGAIFVVGSEQGELQCF 326 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--ee--------eecccceEEEEcCCCcEEEEEcCCceEEEE
Confidence 57788999999999999999999999999998766433 22 245667889999999 88999999999999
Q ss_pred eCCCc
Q 004581 207 DSRHG 211 (744)
Q Consensus 207 d~~~~ 211 (744)
|+.-.
T Consensus 327 D~ALs 331 (545)
T PF11768_consen 327 DMALS 331 (545)
T ss_pred EeecC
Confidence 98743
No 337
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.10 E-value=0.00064 Score=63.30 Aligned_cols=207 Identities=10% Similarity=0.155 Sum_probs=113.0
Q ss_pred CCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccC
Q 004581 419 RKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS 498 (744)
Q Consensus 419 ~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~ 498 (744)
..+..+++.|+...|++-.+..-.|+.+.. + + ++ +.+..+.+ ....-.|++..++.++++--.++.+.++++..
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~-G-~v--lr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL-D-G-KV--LRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEET-T----E--EEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcC-C-C-CE--EEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence 569999999998776665555556677775 2 2 22 33344444 34577888887787777666689999999843
Q ss_pred Cc-e-----eeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC---cceEEEE-------ecCC
Q 004581 499 SE-L-----LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEI---QRQHWFI-------SRLE 562 (744)
Q Consensus 499 ~~-~-----~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~---~~~~~~~-------~~~~ 562 (744)
.. . ...+.-. ....+...+-.++|+|.++.|..+-...-..||.+.. ....... ....
T Consensus 96 ~~~~~~~~~~~~~~l~------~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 96 DTTSLDRADVQKISLG------FPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp --TT--EEEEEEEE---------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred cccccchhhceEEecc------cccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence 21 1 1112110 0012566789999999988888887776677777754 1111110 1112
Q ss_pred CCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCccccccc---CCCceEEEEeCCCCCCcEEEEEcC
Q 004581 563 GASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQE---FPGEVIGLSFSPSPSSSSVIIYSA 639 (744)
Q Consensus 563 ~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~---~~~~v~~i~fspdg~~~~~~~~~~ 639 (744)
...+.+++++|.++++++.+..+..|.++|.++.-+..+ .+...+.+ .-...-+|+|+++| +..++.-.
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~------~L~~g~~gl~~~~~QpEGIa~d~~G--~LYIvsEp 241 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSL------SLDRGFHGLSKDIPQPEGIAFDPDG--NLYIVSEP 241 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEE------E-STTGGG-SS---SEEEEEE-TT----EEEEETT
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEE------EeCCcccCcccccCCccEEEECCCC--CEEEEcCC
Confidence 246789999997788888888889999999555432211 11111111 11457899999986 44444445
Q ss_pred ceEEEE
Q 004581 640 RAMCVI 645 (744)
Q Consensus 640 ~~~~~~ 645 (744)
+-+++|
T Consensus 242 Nlfy~f 247 (248)
T PF06977_consen 242 NLFYRF 247 (248)
T ss_dssp TEEEEE
T ss_pred ceEEEe
Confidence 555544
No 338
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.06 E-value=0.001 Score=67.27 Aligned_cols=104 Identities=14% Similarity=0.046 Sum_probs=63.5
Q ss_pred ecCCCEEEEEe---------CCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCC
Q 004581 139 SADGNMLYSGS---------SDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSR 209 (744)
Q Consensus 139 s~dg~~l~t~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~ 209 (744)
|||+++++... ..+.+.++|+++++...... ....+....|+|+|..++-..++.|.+++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~---------~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~ 71 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP---------PPPKLQDAKWSPDGKYIAFVRDNNLYLRDLA 71 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS----------EETTBSEEEE-SSSTEEEEEETTEEEEESST
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC---------CccccccceeecCCCeeEEEecCceEEEECC
Confidence 68888877742 24678999999876543332 2455677899999944444457889999988
Q ss_pred CcceEEEee-c-------c---------ccceeEEEEcCCCCEEEeecC-CCeEEEEEcc
Q 004581 210 HGTLLQAHS-F-------H---------KGDVNALAAAPSHNRVFSTGS-DGQVILYKAS 251 (744)
Q Consensus 210 ~~~~~~~~~-~-------h---------~~~v~~l~~~~~~~~l~~~~~-dg~i~iw~~~ 251 (744)
+++..+.-. + - -+.-..+.||||+++|+.... +..|..+.+.
T Consensus 72 ~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~ 131 (353)
T PF00930_consen 72 TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLP 131 (353)
T ss_dssp TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEE
T ss_pred CCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEee
Confidence 774443211 1 0 112356889999998887644 4455555443
No 339
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.04 E-value=0.00019 Score=73.09 Aligned_cols=155 Identities=21% Similarity=0.247 Sum_probs=98.9
Q ss_pred CCeEEEEEcCCCCEEEEE---cC--CceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeC-CC--c
Q 004581 419 RKIICSTISNSGMLFAYS---DH--VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DR--R 490 (744)
Q Consensus 419 ~~i~~~~~s~~g~~la~~---~~--~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~-dg--~ 490 (744)
..+..-+|+|+++.+++. .. ..+.++++..+. ...+ ....+ .-...+|+|||++|+.... || .
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~-~~~i-----~~~~g---~~~~P~fspDG~~l~f~~~rdg~~~ 263 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGK-RPVI-----LNFNG---NNGAPAFSPDGSKLAFSSSRDGSPD 263 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCc-ccee-----eccCC---ccCCccCCCCCCEEEEEECCCCCcc
Confidence 556677899999877662 22 346677776522 2222 11222 3345679999999887644 55 5
Q ss_pred EEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCC-C--cEEEEECCCcceEEEEecCCCCcee
Q 004581 491 IYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF-G--DVYIFNLEIQRQHWFISRLEGASVT 567 (744)
Q Consensus 491 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~v~ 567 (744)
|+++|+..++. ..+.. ..+.-+.-.|||||++++..+.. | .|.+++.++............ -.
T Consensus 264 iy~~dl~~~~~-~~Lt~-----------~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~--~~ 329 (425)
T COG0823 264 IYLMDLDGKNL-PRLTN-----------GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGG--NS 329 (425)
T ss_pred EEEEcCCCCcc-eeccc-----------CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCC--Cc
Confidence 77778776653 33443 23334477899999999877643 3 577888888776444433222 22
Q ss_pred EEeecCCCCCeEEEEecC-Ce--EEEEEcCCCc
Q 004581 568 AAGFPPQNNNVLIITTSS-NQ--VYVFDVEAKQ 597 (744)
Q Consensus 568 ~l~~sp~~~~~l~~~~~d-~~--v~vwd~~~~~ 597 (744)
.-.|+| ||++++..+.. |. |.+.|+.++.
T Consensus 330 ~p~~Sp-dG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 330 NPVWSP-DGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CccCCC-CCCEEEEEeccCCceeeEEeccCCCC
Confidence 678999 99999988854 43 6666666553
No 340
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.00017 Score=68.45 Aligned_cols=79 Identities=18% Similarity=0.138 Sum_probs=69.5
Q ss_pred ecccCccCcEEEEEEecCCC-EEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCC
Q 004581 124 RSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADST 200 (744)
Q Consensus 124 ~~~~~h~~~V~~~~~s~dg~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~d 200 (744)
..+.+|...|..++|||..+ +|..++.+..|+|.|+++...+..+. ....+|+++|.-|. .|.+|...
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~---------a~~~~wSC~wDlde~h~IYaGl~n 257 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI---------AYNQIWSCCWDLDERHVIYAGLQN 257 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee---------ccCCceeeeeccCCcceeEEeccC
Confidence 56678888999999999887 78888999999999999998888886 33889999999887 79999999
Q ss_pred CCEEEEeCCCc
Q 004581 201 GSVQFWDSRHG 211 (744)
Q Consensus 201 g~i~vwd~~~~ 211 (744)
|.|.|||++..
T Consensus 258 G~VlvyD~R~~ 268 (463)
T KOG1645|consen 258 GMVLVYDMRQP 268 (463)
T ss_pred ceEEEEEccCC
Confidence 99999999853
No 341
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.00 E-value=0.0074 Score=61.01 Aligned_cols=214 Identities=14% Similarity=0.126 Sum_probs=108.1
Q ss_pred ccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEe-----cCC----eEEE
Q 004581 126 LPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSL-----RCG----TLVS 196 (744)
Q Consensus 126 ~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~----~l~s 196 (744)
+....++|++++.| |=-++|.|..+|.+.|.|++....++.-..............+.++.|. .|+ .+++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 34456889999997 5569999999999999999877777774432211222345677788886 233 6889
Q ss_pred EcCCCCEEEEeCC--C-cceE----EEeeccccceeEEE-EcCCC--------------------CEEEeecCCCeEEEE
Q 004581 197 ADSTGSVQFWDSR--H-GTLL----QAHSFHKGDVNALA-AAPSH--------------------NRVFSTGSDGQVILY 248 (744)
Q Consensus 197 ~~~dg~i~vwd~~--~-~~~~----~~~~~h~~~v~~l~-~~~~~--------------------~~l~~~~~dg~i~iw 248 (744)
|...|.+.+|.+- . +... .....+.++|..+. |+.+. +-++....+..++++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 9999999999764 1 2222 12224556666655 32220 123333456778888
Q ss_pred EcccCcCCCCCCCCcccccceEEEEeeeeeccCcce--eeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCc
Q 004581 249 KASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVR--ALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVP 326 (744)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 326 (744)
...+.+. ... .....+. .+.+.+. .. ...+.
T Consensus 241 ~~~~~k~-----------------~~K--~~~~~~~~~~~~vv~~-------~~---------------------~~~~~ 273 (395)
T PF08596_consen 241 KPPKSKG-----------------AHK--SFDDPFLCSSASVVPT-------IS---------------------RNGGY 273 (395)
T ss_dssp -TT---E-----------------EEE--E-SS-EEEEEEEEEEE-------E----------------------EEEEE
T ss_pred eCCCCcc-----------------cce--eeccccccceEEEEee-------cc---------------------cCCce
Confidence 8776541 111 1111111 1222100 00 00223
Q ss_pred EEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeC-CeEEEEEee
Q 004581 327 MLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS-CRLDILSVR 390 (744)
Q Consensus 327 ~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~i~i~~~~ 390 (744)
.|++-..+|.+++|.+...+.+.... .+.......+....++++|.++...+ .++.++.+-
T Consensus 274 ~Lv~l~~~G~i~i~SLP~Lkei~~~~---l~~~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~ 335 (395)
T PF08596_consen 274 CLVCLFNNGSIRIYSLPSLKEIKSVS---LPPPLDSRRLSSSSISRNGDIFYWTGPSEIQLFSVW 335 (395)
T ss_dssp EEEEEETTSEEEEEETTT--EEEEEE----SS---HHHHTT-EE-TTS-EEEE-SSSEEEEEEEE
T ss_pred EEEEEECCCcEEEEECCCchHhhccc---CCCccccccccccEECCCCCEEEEeCcccEEEEEEE
Confidence 78888899999999998766544333 22223345667788889988776543 355554443
No 342
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.98 E-value=0.0011 Score=67.85 Aligned_cols=131 Identities=21% Similarity=0.288 Sum_probs=72.3
Q ss_pred CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCC
Q 004581 98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS 177 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 177 (744)
+.+++ +.||.-.|+....... ...+.-...+|.+.+ .+|+-...++|.|+.--+.+....+..
T Consensus 45 r~v~V-~g~geY~iyt~~~~r~--------k~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~------- 107 (443)
T PF04053_consen 45 RFVLV-CGDGEYEIYTALAWRN--------KAFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIKL------- 107 (443)
T ss_dssp SEEEE-EETTEEEEEETTTTEE--------EEEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT------------
T ss_pred CEEEE-EcCCEEEEEEccCCcc--------cccCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEEcC-------
Confidence 35555 7778888888431111 123455678899854 466666688999974323333334442
Q ss_pred CCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccC
Q 004581 178 GPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE 253 (744)
Q Consensus 178 ~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~ 253 (744)
...+..+.. |.++....++.|.+||+++++.+..+... +|..+.|+++|++++..+.+ .+.+++....
T Consensus 108 --~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 108 --PFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp --SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred --CcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence 112333332 74444444558999999999999999853 48999999999999988755 5777776554
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.97 E-value=0.00074 Score=69.09 Aligned_cols=183 Identities=9% Similarity=0.117 Sum_probs=97.6
Q ss_pred CCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccC
Q 004581 419 RKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS 498 (744)
Q Consensus 419 ~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~ 498 (744)
..+..+.++|+|++++++.++...+|.... .. - ........++|.+.++ +|+-..+++|.|+.--+
T Consensus 33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~----~r---~------k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALA----WR---N------KAFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFK 98 (443)
T ss_dssp S--SEEEE-TTSSEEEEEETTEEEEEETTT----TE---E------EEEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTE
T ss_pred cCCeeEEECCCCCEEEEEcCCEEEEEEccC----Cc---c------cccCceeEEEEecCcc-EEEEECCCeEEEEEcCc
Confidence 457789999999999999999988887321 11 0 1122567788988554 66666688899974323
Q ss_pred CceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCe
Q 004581 499 SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNV 578 (744)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~ 578 (744)
.+....+.. ...+..+-. |.+|+..+.+ .|.+||+++++.+..+.. .+|..+.|++ ++++
T Consensus 99 ~~~~k~i~~------------~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v---~~vk~V~Ws~-~g~~ 158 (443)
T PF04053_consen 99 NEVVKSIKL------------PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV---SAVKYVIWSD-DGEL 158 (443)
T ss_dssp E-TT-----------------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-T-TSSE
T ss_pred cccceEEcC------------CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec---CCCcEEEEEC-CCCE
Confidence 333334443 223555543 8888777655 799999999998888753 2589999999 9999
Q ss_pred EEEEecCCeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCCCCCcEEEEEcCce
Q 004581 579 LIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARA 641 (744)
Q Consensus 579 l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~ 641 (744)
++..+.+ .++|++.+......-...-.......+......|.+..|.-| +++|++..
T Consensus 159 val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-----~fiYtT~~ 215 (443)
T PF04053_consen 159 VALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-----CFIYTTSN 215 (443)
T ss_dssp EEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-----EEEEE-TT
T ss_pred EEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-----EEEEEcCC
Confidence 9999866 577776654411000000000011222222468888888754 44554443
No 344
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.92 E-value=0.019 Score=58.23 Aligned_cols=151 Identities=15% Similarity=0.183 Sum_probs=78.1
Q ss_pred CCCCeEEEEEcCCCC-EEEE--E-cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEe-eCCCEEE-EEeCCCc
Q 004581 417 ASRKIICSTISNSGM-LFAY--S-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFS-YDSSQLI-IAGHDRR 490 (744)
Q Consensus 417 ~~~~i~~~~~s~~g~-~la~--~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s-pd~~~l~-~~~~dg~ 490 (744)
....+..+.|+++++ +++. . ....+.++..+...+.... .. .....+-........|. +++..++ ....+|.
T Consensus 182 ~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~-~~-~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~ 259 (353)
T PF00930_consen 182 QDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRV-VL-EETSDGWVDVYDPPHFLGPDGNEFLWISERDGY 259 (353)
T ss_dssp SSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEE-EE-EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSS
T ss_pred CccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeE-EE-EecCCcceeeecccccccCCCCEEEEEEEcCCC
Confidence 356788999999998 4443 2 3333444444331122221 11 12222222344466665 6665554 4445664
Q ss_pred --EEEEEccCCceeeeeccCcccccccCCCCCCceEE-EEECCCCCEEE-EEeCC----CcEEEEECC-CcceEEEEecC
Q 004581 491 --IYVVDVSSSELLHTFTPCREEHDREIQPSEPPITK-MFTSSDGQWLA-AVNCF----GDVYIFNLE-IQRQHWFISRL 561 (744)
Q Consensus 491 --i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~spdg~~la-s~~~d----g~i~iwd~~-~~~~~~~~~~~ 561 (744)
|++++...+. .+.+.. ..-.|+. +.++++++.|. ++..+ ..|+.-+++ ++... .+..
T Consensus 260 ~hly~~~~~~~~-~~~lT~-----------G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~-~LT~- 325 (353)
T PF00930_consen 260 RHLYLYDLDGGK-PRQLTS-----------GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPK-CLTC- 325 (353)
T ss_dssp EEEEEEETTSSE-EEESS------------SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEE-ESST-
T ss_pred cEEEEEcccccc-eecccc-----------CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeE-eccC-
Confidence 5555655554 344543 4566754 77888887665 44432 245555666 44443 3322
Q ss_pred CCCceeEEeecCCCCCeEEEEec
Q 004581 562 EGASVTAAGFPPQNNNVLIITTS 584 (744)
Q Consensus 562 ~~~~v~~l~~sp~~~~~l~~~~~ 584 (744)
....-..+.||| ++++++....
T Consensus 326 ~~~~~~~~~~Sp-dg~y~v~~~s 347 (353)
T PF00930_consen 326 EDGDHYSASFSP-DGKYYVDTYS 347 (353)
T ss_dssp TSSTTEEEEE-T-TSSEEEEEEE
T ss_pred CCCCceEEEECC-CCCEEEEEEc
Confidence 211225899999 9998877653
No 345
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.91 E-value=0.00046 Score=72.70 Aligned_cols=192 Identities=16% Similarity=0.154 Sum_probs=134.0
Q ss_pred cCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCC
Q 004581 96 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGL 175 (744)
Q Consensus 96 ~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 175 (744)
+...+..|+-...+..+|+.+.+.. +...-..+.|.-++. ++++|.+|...|+|.+-|..+.+.++++.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~---r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~------ 214 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKET---RTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFD------ 214 (1118)
T ss_pred CCcceeecchhhheeeeecccceee---eeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeee------
Confidence 4567788888888889999755543 333323334666665 67899999999999999999999999998
Q ss_pred CCCCceeEEEEEEecCCeEEEEcC---------CCCEEEEeCCCcceEEEeeccccceeEEEEcCC-CCEEEeecCCCeE
Q 004581 176 GSGPELCIWSLLSLRCGTLVSADS---------TGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPS-HNRVFSTGSDGQV 245 (744)
Q Consensus 176 ~~~~~~~v~~~~~~~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~~~~~dg~i 245 (744)
.|.+.|..+.... ++|++++. |.-|+|||++..+.+.-+..+.++ .-+.|.|. ...+++++..|..
T Consensus 215 --aHs~siSDfDv~G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~ 290 (1118)
T KOG1275|consen 215 --AHSGSISDFDVQG-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQF 290 (1118)
T ss_pred --ccccceeeeeccC-CeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccce
Confidence 6999998876643 36666653 456899999988877777766555 55677775 3568888889999
Q ss_pred EEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCC
Q 004581 246 ILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGV 325 (744)
Q Consensus 246 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 325 (744)
.+-|..+-..... .+.........+.++.++ +++
T Consensus 291 q~vd~~~lsNP~~-------------~~~~v~p~~s~i~~fDiS---------sn~------------------------ 324 (1118)
T KOG1275|consen 291 QFVDTATLSNPPA-------------GVKMVNPNGSGISAFDIS---------SNG------------------------ 324 (1118)
T ss_pred eeccccccCCCcc-------------ceeEEccCCCcceeEEec---------CCC------------------------
Confidence 9888333211000 022223334446777775 444
Q ss_pred cEEEEecCCCeEEEEecCccCCC
Q 004581 326 PMLISAGDDTKLFAYCANEFTKF 348 (744)
Q Consensus 326 ~~l~s~~~d~~i~~~~~~~~~~~ 348 (744)
+.++.|..+|.|.+|.-....++
T Consensus 325 ~alafgd~~g~v~~wa~~~~P~F 347 (1118)
T KOG1275|consen 325 DALAFGDHEGHVNLWADRPQPQF 347 (1118)
T ss_pred ceEEEecccCcEeeecCCCCCcc
Confidence 49999999999999985544333
No 346
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.86 E-value=0.011 Score=59.68 Aligned_cols=102 Identities=14% Similarity=0.151 Sum_probs=55.5
Q ss_pred EEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEE-----CCCCCEEEEEeCCCcEEEEECCCcceE
Q 004581 481 QLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFT-----SSDGQWLAAVNCFGDVYIFNLEIQRQH 555 (744)
Q Consensus 481 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-----spdg~~las~~~dg~i~iwd~~~~~~~ 555 (744)
++++ ..+..++++...+.+..+.... ..-....+++ ...+..|++-..+|.|++|.+...+.+
T Consensus 228 ~vVv-vSe~~irv~~~~~~k~~~K~~~-----------~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 228 YVVV-VSESDIRVFKPPKSKGAHKSFD-----------DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp EEEE-E-SSEEEEE-TT---EEEEE-S-----------S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred EEEE-EcccceEEEeCCCCcccceeec-----------cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence 4444 4466799999987765544432 2223334444 246778889999999999999998887
Q ss_pred EEEecCCC---CceeEEeecCCCCCeEEEEecCCeEEEEEcCCC
Q 004581 556 WFISRLEG---ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 596 (744)
Q Consensus 556 ~~~~~~~~---~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~ 596 (744)
..+.-... ..+....|++ +|+.++..+. ..+.++.+-..
T Consensus 296 ~~~~l~~~~d~~~~~~ssis~-~Gdi~~~~gp-sE~~l~sv~~~ 337 (395)
T PF08596_consen 296 KSVSLPPPLDSRRLSSSSISR-NGDIFYWTGP-SEIQLFSVWGE 337 (395)
T ss_dssp EEEE-SS---HHHHTT-EE-T-TS-EEEE-SS-SEEEEEEEES-
T ss_pred hcccCCCccccccccccEECC-CCCEEEEeCc-ccEEEEEEEcc
Confidence 66644221 2345567788 8887766654 35555655433
No 347
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.82 E-value=0.013 Score=54.77 Aligned_cols=209 Identities=13% Similarity=0.130 Sum_probs=116.5
Q ss_pred ccccceeecCC-eEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCc
Q 004581 363 HLVHNTIFSHT-SLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVK 440 (744)
Q Consensus 363 ~~v~~~~~s~~-~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~ 440 (744)
..+.++++.|+ +.+.+..+..-.|+.+... + +.+.++..........+++..++.++++. .++.
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G-------------~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~ 87 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-G-------------KVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQR 87 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT----------------EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTE
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC-C-------------CEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCc
Confidence 44789999996 5566677776667777643 2 26788887777889999999999888776 5788
Q ss_pred eEEEEeecCCCCCceEEeeeccC--C-cccccccEEEEeeCCCEEEEEeCCCcEEEEEccC---CceeeeeccCcccccc
Q 004581 441 PSLFELKKGKVGQGEWIINKRQL--P-RKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS---SELLHTFTPCREEHDR 514 (744)
Q Consensus 441 v~l~~~~~~~~~~~~~~~~~~~~--~-~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~---~~~~~~~~~~~~~~~~ 514 (744)
+.++++.........-+.....+ . .....+-.++|+|.++.|+++-+..-..||.+.. ...+........ .
T Consensus 88 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~---~ 164 (248)
T PF06977_consen 88 LYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDL---D 164 (248)
T ss_dssp EEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHH---H
T ss_pred EEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccc---c
Confidence 88888854222222222222221 1 2334688999999999888887776677777653 111111100000 0
Q ss_pred cCCCCCCceEEEEECCC-CCEEEEEeCCCcEEEEECCCcceEEEE--ecC-CC-----CceeEEeecCCCCCeEEEEecC
Q 004581 515 EIQPSEPPITKMFTSSD-GQWLAAVNCFGDVYIFNLEIQRQHWFI--SRL-EG-----ASVTAAGFPPQNNNVLIITTSS 585 (744)
Q Consensus 515 ~~~~~~~~i~~l~~spd-g~~las~~~dg~i~iwd~~~~~~~~~~--~~~-~~-----~~v~~l~~sp~~~~~l~~~~~d 585 (744)
........+.+++++|. |++++..+.+..|.++|.+ ++....+ ... |+ ...-.|+|.+ +|+ |.++++-
T Consensus 165 ~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~-LYIvsEp 241 (248)
T PF06977_consen 165 DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-GRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGN-LYIVSEP 241 (248)
T ss_dssp -HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-T-T---EEEEETT
T ss_pred cccceeccccceEEcCCCCeEEEEECCCCeEEEECCC-CCEEEEEEeCCcccCcccccCCccEEEECC-CCC-EEEEcCC
Confidence 01114556889999995 4566777778889999944 4443333 221 11 3578899999 875 5555667
Q ss_pred CeEEEE
Q 004581 586 NQVYVF 591 (744)
Q Consensus 586 ~~v~vw 591 (744)
+.+++|
T Consensus 242 Nlfy~f 247 (248)
T PF06977_consen 242 NLFYRF 247 (248)
T ss_dssp TEEEEE
T ss_pred ceEEEe
Confidence 777666
No 348
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.79 E-value=0.0026 Score=49.69 Aligned_cols=100 Identities=28% Similarity=0.237 Sum_probs=74.1
Q ss_pred EEEEEEec---CC-CEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeC
Q 004581 133 VLSVTWSA---DG-NMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDS 208 (744)
Q Consensus 133 V~~~~~s~---dg-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~ 208 (744)
|+++++.. || +.|++|+.|..||+|+ ..+.+..+. ....|.++.-...++++.+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~---------e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEIT---------ETDKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEe---------cccceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 66777654 33 5899999999999997 457777776 667888898888889999999999999976
Q ss_pred CCcceEEEeeccccceeEEEEcC-C--C-CEEEeecCCCeEE
Q 004581 209 RHGTLLQAHSFHKGDVNALAAAP-S--H-NRVFSTGSDGQVI 246 (744)
Q Consensus 209 ~~~~~~~~~~~h~~~v~~l~~~~-~--~-~~l~~~~~dg~i~ 246 (744)
. ..+...+. ...+.++++.. + | ..|++|-.+|.|-
T Consensus 71 ~--~RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 S--QRLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred c--ceeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 4 44455554 33466666543 2 2 3688888888774
No 349
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.78 E-value=0.023 Score=58.42 Aligned_cols=105 Identities=15% Similarity=0.314 Sum_probs=69.8
Q ss_pred EEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcc
Q 004581 474 IFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQR 553 (744)
Q Consensus 474 ~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~ 553 (744)
.++.+....+....++.+.+.+-...+. +. ..+++..|++||+|++||.-..+|.+.|.+.+-.+
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~------------~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~ 249 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQ---ID------------SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSE 249 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEcccccc---cc------------CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccc
Confidence 3555566556556666666555332211 22 25689999999999999999999999999887666
Q ss_pred eEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCC
Q 004581 554 QHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 596 (744)
Q Consensus 554 ~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~ 596 (744)
....+.......+..|.|+- +. -++..- ...|.+......
T Consensus 250 ~~~e~~~~~~~~p~~~~WCG-~d-av~l~~-~~~l~lvg~~~~ 289 (410)
T PF04841_consen 250 KLCEFDTDSKSPPKQMAWCG-ND-AVVLSW-EDELLLVGPDGD 289 (410)
T ss_pred eeEEeecCcCCCCcEEEEEC-CC-cEEEEe-CCEEEEECCCCC
Confidence 66666554346788999986 43 333333 556777764444
No 350
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.78 E-value=0.081 Score=56.39 Aligned_cols=62 Identities=21% Similarity=0.194 Sum_probs=45.2
Q ss_pred CCeEEEEcCCCCEEEEeCCCcceEEEeeccc-cceeE----------EEEcCCCCEEEeecCCCeEEEEEcccCc
Q 004581 191 CGTLVSADSTGSVQFWDSRHGTLLQAHSFHK-GDVNA----------LAAAPSHNRVFSTGSDGQVILYKASCES 254 (744)
Q Consensus 191 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~-~~v~~----------l~~~~~~~~l~~~~~dg~i~iw~~~~~~ 254 (744)
+++++.++.++.|.-.|.++|+.+.++.... ..+.. +++ .+..++.++.|+.+..+|..+++
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk 141 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGK 141 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCC
Confidence 6688888889999999999999987765321 11111 122 23568888899999999998887
No 351
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.78 E-value=0.014 Score=58.42 Aligned_cols=169 Identities=14% Similarity=0.173 Sum_probs=99.7
Q ss_pred eEEEEEecCCCCeEEEEEcC---C----CCEEEEEcC-----------CceEEEEeecC-CCCCceEEeeeccCCccccc
Q 004581 409 LLVQVKSKASRKIICSTISN---S----GMLFAYSDH-----------VKPSLFELKKG-KVGQGEWIINKRQLPRKLQF 469 (744)
Q Consensus 409 ~~~~~~~~~~~~i~~~~~s~---~----g~~la~~~~-----------~~v~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ 469 (744)
.+..+.......+.+++.-. + ..++++|+. |.+.+|++... ....++-.+..... ..+
T Consensus 14 ~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~---~g~ 90 (321)
T PF03178_consen 14 VLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEV---KGP 90 (321)
T ss_dssp EEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEE---SS-
T ss_pred EEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEee---cCc
Confidence 45566666666666554432 2 466776422 77999999762 11123222223333 336
Q ss_pred ccEEEEeeCCCEEEEEeCCCcEEEEEccCCc-eeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEE
Q 004581 470 AHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE-LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFN 548 (744)
Q Consensus 470 v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd 548 (744)
|++++-- ++ +|+++. ++.|.+|++...+ +...-... ....++++.. .++++++|+....|.++.
T Consensus 91 V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~----------~~~~i~sl~~--~~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 91 VTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYD----------SPFYITSLSV--FKNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-----------BSSSEEEEEE--ETTEEEEEESSSSEEEEE
T ss_pred ceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheec----------ceEEEEEEec--cccEEEEEEcccCEEEEE
Confidence 7777654 44 455444 4789999998776 43332210 1235555554 466999999888888886
Q ss_pred CCC--cceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCC
Q 004581 549 LEI--QRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 596 (744)
Q Consensus 549 ~~~--~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~ 596 (744)
.+. .+....-.......++++.|-+ +++.+++++.+|.+.++.....
T Consensus 156 ~~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 156 YDEENNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNPE 204 (321)
T ss_dssp EETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS
T ss_pred EEccCCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECCC
Confidence 553 2232222222345789999997 5579999999999999998743
No 352
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.73 E-value=0.029 Score=55.06 Aligned_cols=158 Identities=15% Similarity=0.183 Sum_probs=79.9
Q ss_pred CCCeEEEEEcCCC-CEEEEEcCC---c--eEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeC----
Q 004581 418 SRKIICSTISNSG-MLFAYSDHV---K--PSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH---- 487 (744)
Q Consensus 418 ~~~i~~~~~s~~g-~~la~~~~~---~--v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~---- 487 (744)
...+..+.+||.. .+|+.+-+| . -|+|-++. + +...|.+.... ....+..=-|+|||..|..-+.
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~-d-g~~~~~v~~~~---~~e~~gHEfw~~DG~~i~y~~~~~~~ 261 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT-D-GSNVKKVHRRM---EGESVGHEFWVPDGSTIWYDSYTPGG 261 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET-T-S---EESS------TTEEEEEEEE-TTSS-EEEEEEETTT
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc-C-CCcceeeecCC---CCcccccccccCCCCEEEEEeecCCC
Confidence 3778888899965 556665332 3 37898886 2 22333333221 1235556678999998865432
Q ss_pred -CCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCC----------------cEEEEECC
Q 004581 488 -DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG----------------DVYIFNLE 550 (744)
Q Consensus 488 -dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg----------------~i~iwd~~ 550 (744)
+..|.-+|+.+++...... ...-..+..++||+++|-=+.|. .|++++++
T Consensus 262 ~~~~i~~~d~~t~~~~~~~~-------------~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~ 328 (386)
T PF14583_consen 262 QDFWIAGYDPDTGERRRLME-------------MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVE 328 (386)
T ss_dssp --EEEEEE-TTT--EEEEEE-------------E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETT
T ss_pred CceEEEeeCCCCCCceEEEe-------------CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccc
Confidence 3357777888776543222 22455777889999876543332 56778888
Q ss_pred CcceEEEEe--------cCCC-CceeEEeecCCCCCeEEEEe-cCCeEEEEEcC
Q 004581 551 IQRQHWFIS--------RLEG-ASVTAAGFPPQNNNVLIITT-SSNQVYVFDVE 594 (744)
Q Consensus 551 ~~~~~~~~~--------~~~~-~~v~~l~~sp~~~~~l~~~~-~d~~v~vwd~~ 594 (744)
.++...... ..+. ..--...|+| |+++++..+ ..|...||-++
T Consensus 329 ~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSP-Dgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 329 AGRFRKLARHDTSWKVLDGDRQVTHPHPSFSP-DGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp TTEEEEEEE-------BTTBSSTT----EE-T-TSSEEEEEE-TTSS-EEEEEE
T ss_pred cCceeeeeeccCcceeecCCCccCCCCCccCC-CCCEEEEECCCCCCccEEEEe
Confidence 766542211 1010 1124578999 888766554 56766666543
No 353
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.73 E-value=0.0033 Score=49.15 Aligned_cols=101 Identities=21% Similarity=0.282 Sum_probs=73.1
Q ss_pred ccEEEEee---CC-CEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEE
Q 004581 470 AHSMIFSY---DS-SQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVY 545 (744)
Q Consensus 470 v~~i~~sp---d~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~ 545 (744)
|+++++.. || +.|++|+.|..|++|+- .+.+..+.. ...|++++-... ..++.+..+|+|-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e------------~~~v~~L~~~~~-~~F~Y~l~NGTVG 66 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE------------TDKVTSLCSLGG-GRFAYALANGTVG 66 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec------------ccceEEEEEcCC-CEEEEEecCCEEE
Confidence 45565543 32 57999999999999984 467777774 677888887776 5689999999999
Q ss_pred EEECCCcceEEEEecCCCCceeEEeecCCCC---CeEEEEecCCeEE
Q 004581 546 IFNLEIQRQHWFISRLEGASVTAAGFPPQNN---NVLIITTSSNQVY 589 (744)
Q Consensus 546 iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~---~~l~~~~~d~~v~ 589 (744)
+|+- ....|.++..+ .++++++..-++ .-|++|-.+|.|-
T Consensus 67 vY~~--~~RlWRiKSK~--~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 67 VYDR--SQRLWRIKSKN--QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEeC--cceeeeeccCC--CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 9975 34456666544 577777764121 2588888888764
No 354
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.72 E-value=0.029 Score=57.71 Aligned_cols=147 Identities=10% Similarity=0.083 Sum_probs=71.5
Q ss_pred eEEEEecCCeEEEEEecCCCceeEe-----ecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCc-eEEEEEecC
Q 004581 99 RVALACDDGCVRIYRITDSDELIYH-----RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY-EIYRITVGL 172 (744)
Q Consensus 99 ~la~~~~dg~i~iwd~~~~~~~~~~-----~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~-~~~~~~~~~ 172 (744)
.|++-..||.+++||+. |+. .+. ....-.+..|.+..+..+|-.+.+ .++.+.+.+-.... ..+.+...+
T Consensus 93 ~LvvV~~dG~v~vy~~~-G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p 168 (410)
T PF04841_consen 93 ELVVVQSDGTVRVYDLF-GEF-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEPVKLRRLPEIP 168 (410)
T ss_pred eEEEEEcCCEEEEEeCC-Cce-eechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccccchhhccccCC
Confidence 77888899999999996 333 211 111112233444455556644444 34444444322221 111111101
Q ss_pred CCCCCCCce-eEEE-EEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEE
Q 004581 173 GGLGSGPEL-CIWS-LLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK 249 (744)
Q Consensus 173 ~~~~~~~~~-~v~~-~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~ 249 (744)
......+.. ..+. ..++.+. ..+....++.+.+-+-...+. +. ..+++..+++||++++++.-..+|.+.+.+
T Consensus 169 ~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~s 244 (410)
T PF04841_consen 169 GLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVS 244 (410)
T ss_pred CcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEE
Confidence 100000111 1111 1233333 333333344444333221111 22 246899999999999999998999988876
Q ss_pred cccC
Q 004581 250 ASCE 253 (744)
Q Consensus 250 ~~~~ 253 (744)
.+-.
T Consensus 245 sDf~ 248 (410)
T PF04841_consen 245 SDFS 248 (410)
T ss_pred Cccc
Confidence 5443
No 355
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.72 E-value=0.065 Score=53.59 Aligned_cols=144 Identities=16% Similarity=0.199 Sum_probs=93.4
Q ss_pred CeEEEEec----------CCeEEEEEecCC----CceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCc
Q 004581 98 RRVALACD----------DGCVRIYRITDS----DELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY 163 (744)
Q Consensus 98 ~~la~~~~----------dg~i~iwd~~~~----~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~ 163 (744)
.++++|+. .|.|.++++... ..+...... ...++|++++-- +|. |+.+. .+.|.+|++...+
T Consensus 43 ~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 43 EYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp EEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred CEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence 36776653 299999999853 244333222 347889999876 444 55444 4699999998887
Q ss_pred -eEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCC-cceEEEee--ccccceeEEEEcCCCCEEEee
Q 004581 164 -EIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRH-GTLLQAHS--FHKGDVNALAAAPSHNRVFST 239 (744)
Q Consensus 164 -~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~--~h~~~v~~l~~~~~~~~l~~~ 239 (744)
....... .....+.++....+ +++.|+....+.++..+. ...+..+. .....++++.|.++++.++++
T Consensus 119 ~l~~~~~~-------~~~~~i~sl~~~~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 119 TLLKKAFY-------DSPFYITSLSVFKN-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp SEEEEEEE--------BSSSEEEEEEETT-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE
T ss_pred cchhhhee-------cceEEEEEEecccc-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE
Confidence 4444432 23446777766644 899999988888875442 23232222 235568899998666799999
Q ss_pred cCCCeEEEEEcccC
Q 004581 240 GSDGQVILYKASCE 253 (744)
Q Consensus 240 ~~dg~i~iw~~~~~ 253 (744)
..+|.+.++.....
T Consensus 191 D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 191 DKDGNLFVLRYNPE 204 (321)
T ss_dssp ETTSEEEEEEE-SS
T ss_pred cCCCeEEEEEECCC
Confidence 99999999998753
No 356
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.71 E-value=0.012 Score=61.41 Aligned_cols=103 Identities=12% Similarity=0.003 Sum_probs=75.0
Q ss_pred EecCCCEEEEEeCCCeEEEEEccC----C-ceEEEEEecCCCCCCCCceeEEEEEEecCC-e-EEEEcCCCCEEEEeCCC
Q 004581 138 WSADGNMLYSGSSDGYIRSWDAKL----G-YEIYRITVGLGGLGSGPELCIWSLLSLRCG-T-LVSADSTGSVQFWDSRH 210 (744)
Q Consensus 138 ~s~dg~~l~t~~~dg~i~vwd~~~----~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~-l~s~~~dg~i~vwd~~~ 210 (744)
+.++|++...+ ++.|.+.|..+ + +.+..+. -....+.+.++||| + ++++..++++.|.|+.+
T Consensus 284 ~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP---------VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 284 AVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP---------VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred hhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE---------CCCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence 34578876653 56899999988 3 4555555 44556789999999 4 55666699999999987
Q ss_pred cce------------EEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEccc
Q 004581 211 GTL------------LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 252 (744)
Q Consensus 211 ~~~------------~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~ 252 (744)
.+. ......- ..-...+|.++|+...+...|..|..|++..
T Consensus 353 ~k~~~~~~~~~~~~vvaevevG-lGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 353 LDDLFDGKIKPRDAVVAEPELG-LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhhhccCCccceEEEeeccC-CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 442 3334332 2335678999998777788899999999987
No 357
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.70 E-value=0.0011 Score=67.72 Aligned_cols=177 Identities=19% Similarity=0.137 Sum_probs=106.8
Q ss_pred CCCCCCeeEEe---cCC-CeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCc
Q 004581 1 MGLPGGRLFSS---SID-GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHE 76 (744)
Q Consensus 1 ~~~~~~~l~~~---~~d-~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (744)
|++.+..++-. ... ..+.++|+++++....+. ..+.-..-+|+|||+.
T Consensus 200 ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~--------------------------- 251 (425)
T COG0823 200 WSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSK--------------------------- 251 (425)
T ss_pred cCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCE---------------------------
Confidence 45666665443 223 579999999987776655 3445557789999964
Q ss_pred CccCCCCCCcccccccccccCCeEEEEecCCeE--EEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeC-CC-
Q 004581 77 TSESENDSDSDELHEQSVVEDRRVALACDDGCV--RIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-DG- 152 (744)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i--~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~-dg- 152 (744)
++.+...||.. .+.|+.++. + ..+..-.+.-..-.|+|||+.++..+. .|
T Consensus 252 ----------------------l~f~~~rdg~~~iy~~dl~~~~-~---~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~ 305 (425)
T COG0823 252 ----------------------LAFSSSRDGSPDIYLMDLDGKN-L---PRLTNGFGINTSPSWSPDGSKIVFTSDRGGR 305 (425)
T ss_pred ----------------------EEEEECCCCCccEEEEcCCCCc-c---eecccCCccccCccCCCCCCEEEEEeCCCCC
Confidence 34455666655 455555333 3 334444444457889999999987765 33
Q ss_pred -eEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcC-CCC--EEEEeCCCcceEEEeeccccceeEE
Q 004581 153 -YIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS-TGS--VQFWDSRHGTLLQAHSFHKGDVNAL 227 (744)
Q Consensus 153 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~-dg~--i~vwd~~~~~~~~~~~~h~~~v~~l 227 (744)
.|.+.|.+.+.. .+++.. ...-..-.++||| +|+..+. +|. |.+.|+.++..++.+. +......-
T Consensus 306 p~I~~~~~~g~~~-~riT~~--------~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~p 375 (425)
T COG0823 306 PQIYLYDLEGSQV-TRLTFS--------GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESP 375 (425)
T ss_pred cceEEECCCCCce-eEeecc--------CCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCC
Confidence 477777765544 555431 1111167789999 5544443 454 6677776655444443 23344456
Q ss_pred EEcCCCCEEEeecC
Q 004581 228 AAAPSHNRVFSTGS 241 (744)
Q Consensus 228 ~~~~~~~~l~~~~~ 241 (744)
.+.+++..++..+.
T Consensus 376 s~~~ng~~i~~~s~ 389 (425)
T COG0823 376 SWAPNGRMIMFSSG 389 (425)
T ss_pred CcCCCCceEEEecc
Confidence 77788877665443
No 358
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.68 E-value=0.052 Score=52.94 Aligned_cols=154 Identities=14% Similarity=0.192 Sum_probs=86.3
Q ss_pred CCCEEEEEcCCceEEEEeecCCCCC-ceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeecc
Q 004581 429 SGMLFAYSDHVKPSLFELKKGKVGQ-GEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTP 507 (744)
Q Consensus 429 ~g~~la~~~~~~v~l~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 507 (744)
.+..|+++....+.+|......... +. .+...++ ..+..++|. ++.|+.|..++ ..+.|+.++.....+..
T Consensus 104 ~~~~L~va~kk~i~i~~~~~~~~~f~~~--~ke~~lp---~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~ 175 (275)
T PF00780_consen 104 GSRRLCVAVKKKILIYEWNDPRNSFSKL--LKEISLP---DPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDP 175 (275)
T ss_pred cceEEEEEECCEEEEEEEECCcccccce--eEEEEcC---CCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCc
Confidence 3456777777799999988632222 11 2333333 378888887 67788777555 88999987766544432
Q ss_pred Cccccc-ccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCC
Q 004581 508 CREEHD-REIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSN 586 (744)
Q Consensus 508 ~~~~~~-~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~ 586 (744)
...... ........++..+..+ ++.+|++- +..-.+.|..+.......-... ..+.++++.. .+|+..+. +
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~-~~p~~~~~~~---pyli~~~~-~ 247 (275)
T PF00780_consen 176 SDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKNGEPSRKSTIQWS-SAPQSVAYSS---PYLIAFSS-N 247 (275)
T ss_pred cCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCCCCcCcccEEEcC-CchhEEEEEC---CEEEEECC-C
Confidence 110000 0000112344445544 45666653 3334444554433221111222 3677788854 56666655 5
Q ss_pred eEEEEEcCCCcc
Q 004581 587 QVYVFDVEAKQL 598 (744)
Q Consensus 587 ~v~vwd~~~~~~ 598 (744)
.|.||++.++++
T Consensus 248 ~iEV~~~~~~~l 259 (275)
T PF00780_consen 248 SIEVRSLETGEL 259 (275)
T ss_pred EEEEEECcCCcE
Confidence 599999999975
No 359
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.67 E-value=0.023 Score=52.76 Aligned_cols=210 Identities=12% Similarity=0.150 Sum_probs=123.6
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEE-EcCC--ceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEe
Q 004581 410 LVQVKSKASRKIICSTISNSGMLFAY-SDHV--KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG 486 (744)
Q Consensus 410 ~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~--~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~ 486 (744)
+.+.......-...+.|..+|.++-+ |..| .++.+++.+ +. + .....++... ---.++.. +++.....-
T Consensus 36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~t---g~-~--~~~~~l~~~~-FgEGit~~-~d~l~qLTW 107 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLET---GK-V--LQSVPLPPRY-FGEGITIL-GDKLYQLTW 107 (264)
T ss_dssp EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTT---SS-E--EEEEE-TTT---EEEEEEE-TTEEEEEES
T ss_pred EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCC---Cc-E--EEEEECCccc-cceeEEEE-CCEEEEEEe
Confidence 44444444455667778777776655 5444 566666654 22 1 2223333321 12233332 334444455
Q ss_pred CCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCC---
Q 004581 487 HDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEG--- 563 (744)
Q Consensus 487 ~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~--- 563 (744)
.++...+||..+.+.+.++.- .+.=..++ .||+.|+..+....|+++|.++.+....+.....
T Consensus 108 k~~~~f~yd~~tl~~~~~~~y------------~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~p 173 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFPY------------PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRP 173 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE-------------SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE
T ss_pred cCCeEEEEccccceEEEEEec------------CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEE
Confidence 689999999999999999874 55566777 5788899988888999999988876665543222
Q ss_pred -CceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCcc----cccccCCCceEEEEeCCCCCCcEEEEEc
Q 004581 564 -ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLP----RRYQEFPGEVIGLSFSPSPSSSSVIIYS 638 (744)
Q Consensus 564 -~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~----~~~~~~~~~v~~i~fspdg~~~~~~~~~ 638 (744)
..++-|.|- +|...|=.=....|...|.++|+...|-.-...... ..-.....-..+|+++|. .+++++.|
T Consensus 174 v~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~--~~~l~vTG 249 (264)
T PF05096_consen 174 VSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE--TDRLFVTG 249 (264)
T ss_dssp ---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT--TTEEEEEE
T ss_pred CCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCC--CCEEEEEe
Confidence 356778887 577777777778899999999987776543221100 001112466899999996 57899999
Q ss_pred CceEEEE
Q 004581 639 ARAMCVI 645 (744)
Q Consensus 639 ~~~~~~~ 645 (744)
-.|-.++
T Consensus 250 K~Wp~ly 256 (264)
T PF05096_consen 250 KLWPKLY 256 (264)
T ss_dssp TT-SEEE
T ss_pred CCCCceE
Confidence 9884433
No 360
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.66 E-value=0.046 Score=53.15 Aligned_cols=147 Identities=14% Similarity=0.107 Sum_probs=91.6
Q ss_pred cccEEEEeeCCCEEEEEeC-----------CCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEE
Q 004581 469 FAHSMIFSYDSSQLIIAGH-----------DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA 537 (744)
Q Consensus 469 ~v~~i~~spd~~~l~~~~~-----------dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las 537 (744)
..+.+...|+|.+.+.... -|.|+.+|. .+..++.+.. +-..-+.|+||||++.|..
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~-----------~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD-----------DLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecC-----------cEEecCceEECCCCCEEEE
Confidence 5677888899888776543 133444443 4556555554 4555678999999998888
Q ss_pred EeCC-CcEEEEECCC--c----ceEEEEecCCCCceeEEeecCCCCCeEEEEecCC-eEEEEEcCCCccccccccccCCc
Q 004581 538 VNCF-GDVYIFNLEI--Q----RQHWFISRLEGASVTAAGFPPQNNNVLIITTSSN-QVYVFDVEAKQLGEWSMQHTFVL 609 (744)
Q Consensus 538 ~~~d-g~i~iwd~~~--~----~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~-~v~vwd~~~~~~~~ws~~~~~~~ 609 (744)
++.. +.|+-|+++. + +..........+.+-.++... +|.+.+++...| .|.+|+.+ |++
T Consensus 180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~~pd-G~l----------- 246 (307)
T COG3386 180 ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRFNPD-GKL----------- 246 (307)
T ss_pred EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEEEECCC-CcE-----------
Confidence 8754 7888888762 1 111122222334566677777 777766555554 89999998 543
Q ss_pred ccccccCCCceEEEEeCCCCCCcEEEEEcCce
Q 004581 610 PRRYQEFPGEVIGLSFSPSPSSSSVIIYSARA 641 (744)
Q Consensus 610 ~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~ 641 (744)
...+.-....+++++|--. ..+.+++.++..
T Consensus 247 ~~~i~lP~~~~t~~~FgG~-~~~~L~iTs~~~ 277 (307)
T COG3386 247 LGEIKLPVKRPTNPAFGGP-DLNTLYITSARS 277 (307)
T ss_pred EEEEECCCCCCccceEeCC-CcCEEEEEecCC
Confidence 2223322367788888543 246677766665
No 361
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00026 Score=71.50 Aligned_cols=93 Identities=10% Similarity=0.047 Sum_probs=80.1
Q ss_pred cccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceE-EEEECCCCCEEEEEeCCCcEEEE
Q 004581 469 FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPIT-KMFTSSDGQWLAAVNCFGDVYIF 547 (744)
Q Consensus 469 ~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~spdg~~las~~~dg~i~iw 547 (744)
.+..+.|+|.-..+|++..+|.|.+..+. .+.+.++.- +...++ +++|.|||+.||.|-.||+|++.
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~-----------p~~~v~~sL~W~~DGkllaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI-----------PGENVTASLCWRPDGKLLAVGFKDGTIRLH 89 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC-----------CCCccceeeeecCCCCEEEEEecCCeEEEE
Confidence 67788999999999999999999999987 888888886 466666 99999999999999999999999
Q ss_pred ECCCcceEEEEecCCCCceeEEeecC
Q 004581 548 NLEIQRQHWFISRLEGASVTAAGFPP 573 (744)
Q Consensus 548 d~~~~~~~~~~~~~~~~~v~~l~~sp 573 (744)
|++++..+...+......|.++-|++
T Consensus 90 Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 90 DVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EccCCCceeccccccccchheeeccc
Confidence 99999877664433446889999975
No 362
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00032 Score=70.90 Aligned_cols=95 Identities=17% Similarity=0.220 Sum_probs=77.5
Q ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCcee-EEeecCCCCCeEEEEecCCeEEEEEcCCCcc
Q 004581 520 EPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVT-AAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 598 (744)
Q Consensus 520 ~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~-~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~ 598 (744)
...|..+.|+|.-..+|++..+|.|.++.++ .+.+++++. ++..++ +++|.| ||+.||+|-.||+|++-|++++..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~-p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI-PGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC-CCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCc
Confidence 4558889999999999999999999999999 777888875 344566 999999 999999999999999999999863
Q ss_pred ccccccccCCcccccccCCCceEEEEeCC
Q 004581 599 GEWSMQHTFVLPRRYQEFPGEVIGLSFSP 627 (744)
Q Consensus 599 ~~ws~~~~~~~~~~~~~~~~~v~~i~fsp 627 (744)
+.........+|..+.|+|
T Consensus 97 ----------l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 ----------LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ----------eeccccccccchheeeccc
Confidence 1222233446788888875
No 363
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.62 E-value=1.3e-05 Score=80.34 Aligned_cols=143 Identities=20% Similarity=0.282 Sum_probs=98.1
Q ss_pred CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEec-CCCEEEEEe----CCCeEEEEEccCCce--E--EEE
Q 004581 98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA-DGNMLYSGS----SDGYIRSWDAKLGYE--I--YRI 168 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~-dg~~l~t~~----~dg~i~vwd~~~~~~--~--~~~ 168 (744)
..+++|..+|.|.+-.+.....- ......+|....++++|++ |.+.||.|- .|..+.|||+.++-. . ..+
T Consensus 71 cIlavG~atG~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~f 149 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDS-SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLF 149 (783)
T ss_pred hhhhhccccCceEEeecCCcccc-cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccc
Confidence 48899999999999988632211 1145567889999999998 456777663 367899999988722 1 111
Q ss_pred EecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcC-CCCEEEeecCCCeEE
Q 004581 169 TVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAP-SHNRVFSTGSDGQVI 246 (744)
Q Consensus 169 ~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~~~~~dg~i~ 246 (744)
.. +......+++|..+. ++++|.....+.++|++. .+...-...+..+..+.+.| .++++++-. ||.|.
T Consensus 150 s~-------~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq-s~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iA 220 (783)
T KOG1008|consen 150 SS-------STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ-SLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIA 220 (783)
T ss_pred cc-------ccccCccccccccCcchhhcccccchhhhhhhhh-hhhhhhhhhhhhcccceecCCCCCceeccc-cCcee
Confidence 11 123344478888777 778888888999999982 22222223345667788888 677777654 99999
Q ss_pred EEEc
Q 004581 247 LYKA 250 (744)
Q Consensus 247 iw~~ 250 (744)
+||.
T Consensus 221 iwD~ 224 (783)
T KOG1008|consen 221 IWDT 224 (783)
T ss_pred eccc
Confidence 9994
No 364
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.61 E-value=0.18 Score=55.75 Aligned_cols=121 Identities=14% Similarity=0.018 Sum_probs=72.0
Q ss_pred CCeEEEEecCCeEEEEEecCCCceeEeecccCc-c-----CcEEEEEEec----------------CCCEEEEEeCCCeE
Q 004581 97 DRRVALACDDGCVRIYRITDSDELIYHRSLPRV-S-----GRVLSVTWSA----------------DGNMLYSGSSDGYI 154 (744)
Q Consensus 97 ~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h-~-----~~V~~~~~s~----------------dg~~l~t~~~dg~i 154 (744)
+..|..++.++.|.=.|..+++.+-... .... . .....+++.. .+..++.++.|+.+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d-~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFD-PKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEc-CCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 5678888888988888888877653211 1110 0 0112233321 34578888899999
Q ss_pred EEEEccCCceEEEEEecCCCC-CC---CCce---eEEEEEEecCCeEEEEcC----------CCCEEEEeCCCcceEEEe
Q 004581 155 RSWDAKLGYEIYRITVGLGGL-GS---GPEL---CIWSLLSLRCGTLVSADS----------TGSVQFWDSRHGTLLQAH 217 (744)
Q Consensus 155 ~vwd~~~~~~~~~~~~~~~~~-~~---~~~~---~v~~~~~~~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~ 217 (744)
.-.|.++|+....+...-.-. .. .... .+++--..-++.++.|+. +|.|+-+|.++|+.+..+
T Consensus 273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999999998764210000 00 0000 011111111456666643 688999999999998776
Q ss_pred e
Q 004581 218 S 218 (744)
Q Consensus 218 ~ 218 (744)
.
T Consensus 353 ~ 353 (764)
T TIGR03074 353 D 353 (764)
T ss_pred e
Confidence 5
No 365
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.013 Score=59.67 Aligned_cols=195 Identities=13% Similarity=0.131 Sum_probs=127.5
Q ss_pred CCeEEEEEcCCCCEEEE--EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeC---CCcEEE
Q 004581 419 RKIICSTISNSGMLFAY--SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH---DRRIYV 493 (744)
Q Consensus 419 ~~i~~~~~s~~g~~la~--~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~---dg~i~v 493 (744)
.....+++++.+..+.+ ..++.+.+.+... . .. ...... + .....++++|+++.+.++.. ++.+.+
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~---~-~~--~~~~~v-G--~~P~~~~~~~~~~~vYV~n~~~~~~~vsv 144 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTAT---N-TV--LGSIPV-G--LGPVGLAVDPDGKYVYVANAGNGNNTVSV 144 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcc---c-ce--eeEeee-c--cCCceEEECCCCCEEEEEecccCCceEEE
Confidence 33457788888875554 3578888888543 1 11 111111 1 15678999999998887765 689999
Q ss_pred EEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEe-CCCcEEEEECCCcceEE-E----EecCCCCcee
Q 004581 494 VDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN-CFGDVYIFNLEIQRQHW-F----ISRLEGASVT 567 (744)
Q Consensus 494 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~-~dg~i~iwd~~~~~~~~-~----~~~~~~~~v~ 567 (744)
.|..+++.+.+... -..+ ..++++|+|+.+..+. .++.|.+.|.++..... . .. ....+.
T Consensus 145 id~~t~~~~~~~~v-----------G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~--~~~~P~ 210 (381)
T COG3391 145 IDAATNKVTATIPV-----------GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG--VGTGPA 210 (381)
T ss_pred EeCCCCeEEEEEec-----------CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc--cCCCCc
Confidence 99998888887543 2233 8999999999776665 78899999987766542 1 11 124667
Q ss_pred EEeecCCCCCeEEEEecC---CeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCCCCCcEEEEEcCceEEE
Q 004581 568 AAGFPPQNNNVLIITTSS---NQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCV 644 (744)
Q Consensus 568 ~l~~sp~~~~~l~~~~~d---~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~~~~ 644 (744)
.+.++| ++.++.+.... +.+...|..++....+- . ..+.. ...++.++|+|+--.+.......+..
T Consensus 211 ~i~v~~-~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~--------~-~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 211 GIAVDP-DGNRVYVANDGSGSNNVLKIDTATGNVTATD--------L-PVGSG-APRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred eEEECC-CCCEEEEEeccCCCceEEEEeCCCceEEEec--------c-ccccC-CCCceeECCCCCEEEEEecCCCeEEE
Confidence 899999 88877776554 58999999988754310 0 11111 45678999986411111122355666
Q ss_pred EeC
Q 004581 645 IDF 647 (744)
Q Consensus 645 ~~~ 647 (744)
+|.
T Consensus 280 id~ 282 (381)
T COG3391 280 IDG 282 (381)
T ss_pred EeC
Confidence 775
No 366
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.55 E-value=0.023 Score=52.60 Aligned_cols=212 Identities=12% Similarity=0.132 Sum_probs=131.4
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEcc
Q 004581 418 SRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS 497 (744)
Q Consensus 418 ~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~ 497 (744)
...+.++.|+|+.+.|.+..+.--.+..+.. + + .+ +.+..+.+ ....-.+.+..+|+++++--.++.+.++.+.
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~-~-G-dl--irtiPL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTK-E-G-DL--IRTIPLTG-FSDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEec-C-C-ce--EEEecccc-cCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 3568999999999998887776666777765 1 2 22 33344444 3356678888888888887779999999886
Q ss_pred CCceeeeeccCcccccccCCCC-CCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEE--EecCCC-------Ccee
Q 004581 498 SSELLHTFTPCREEHDREIQPS-EPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWF--ISRLEG-------ASVT 567 (744)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~--~~~~~~-------~~v~ 567 (744)
....+..+....-. -+...+ +...-.++|+|..+.|..+-.-.-+.||.++....... ....+. ..|.
T Consensus 159 ~~t~~~~~~~~~i~--L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS 236 (316)
T COG3204 159 ADTTVISAKVQKIP--LGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS 236 (316)
T ss_pred CCccEEeccceEEe--ccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence 55322222210000 000112 56677899999999999988887788887764331111 111111 3577
Q ss_pred EEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCcccccccCC---CceEEEEeCCCCCCcEEEEEcCceEEE
Q 004581 568 AAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFP---GEVIGLSFSPSPSSSSVIIYSARAMCV 644 (744)
Q Consensus 568 ~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~---~~v~~i~fspdg~~~~~~~~~~~~~~~ 644 (744)
++.|++..+.+|+.+.+++.+...|....-.... .+.+...+.. -..-+|+..++|+ ..++.-.+-+++
T Consensus 237 gl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~l------sL~~g~~gL~~dipqaEGiamDd~g~--lYIvSEPnlfy~ 308 (316)
T COG3204 237 GLEFNAITNSLLVLSDESRRLLEVDLSGEVIELL------SLTKGNHGLSSDIPQAEGIAMDDDGN--LYIVSEPNLFYR 308 (316)
T ss_pred cceecCCCCcEEEEecCCceEEEEecCCCeeeeE------EeccCCCCCcccCCCcceeEECCCCC--EEEEecCCccee
Confidence 8899987788888888899999999877632111 1222222222 3457889988854 333333444444
Q ss_pred E
Q 004581 645 I 645 (744)
Q Consensus 645 ~ 645 (744)
+
T Consensus 309 F 309 (316)
T COG3204 309 F 309 (316)
T ss_pred c
Confidence 3
No 367
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.024 Score=57.90 Aligned_cols=215 Identities=13% Similarity=0.140 Sum_probs=137.4
Q ss_pred cccEEEEeeCCCEEEEEe-CCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeC---CCcE
Q 004581 469 FAHSMIFSYDSSQLIIAG-HDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC---FGDV 544 (744)
Q Consensus 469 ~v~~i~~spd~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~---dg~i 544 (744)
....+++++++..+.... .++.|.+.|..+.+.+..... ......++++|+++.+..+.. ++.+
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v------------G~~P~~~~~~~~~~~vYV~n~~~~~~~v 142 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV------------GLGPVGLAVDPDGKYVYVANAGNGNNTV 142 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee------------ccCCceEEECCCCCEEEEEecccCCceE
Confidence 456788889888665554 468899999877777766654 336778999999998887776 6889
Q ss_pred EEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEe-cCCeEEEEEcCCCccccccccccCCcccccccCCCceEEE
Q 004581 545 YIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITT-SSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGL 623 (744)
Q Consensus 545 ~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~-~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i 623 (744)
.+.|-.+.+.....+... ....++++| +++.++++. .++.|.+.|..+..+.. . .+............+
T Consensus 143 svid~~t~~~~~~~~vG~--~P~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~-~------~~~~~~~~~~~P~~i 212 (381)
T COG3391 143 SVIDAATNKVTATIPVGN--TPTGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVVR-G------SVGSLVGVGTGPAGI 212 (381)
T ss_pred EEEeCCCCeEEEEEecCC--CcceEEECC-CCCeEEEEecCCCeEEEEeCCCcceec-c------ccccccccCCCCceE
Confidence 999999998877765533 348999999 998776665 67899999977775421 0 001111222455789
Q ss_pred EeCCCCCCcEEEEEcC--ceEEEEeCCCCCCCCccCcccCCCchhhhhhccCCccccccccccccccccccccCCcceEE
Q 004581 624 SFSPSPSSSSVIIYSA--RAMCVIDFGRPVDPDDETDMVSGQGSALRKIASTPINGRLKRKLRDCQTESNKLHGRKNFEF 701 (744)
Q Consensus 624 ~fspdg~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 701 (744)
.++|||+--.+..... ..+..+|..... ........++ . .+.. ..
T Consensus 213 ~v~~~g~~~yV~~~~~~~~~v~~id~~~~~-----------------v~~~~~~~~~--------------~-~~~~-v~ 259 (381)
T COG3391 213 AVDPDGNRVYVANDGSGSNNVLKIDTATGN-----------------VTATDLPVGS--------------G-APRG-VA 259 (381)
T ss_pred EECCCCCEEEEEeccCCCceEEEEeCCCce-----------------EEEecccccc--------------C-CCCc-ee
Confidence 9999964222222222 256666653200 0000000000 0 0112 23
Q ss_pred EecccceEEeeecCCCeEEEEecChHHHHhcCCCCcc
Q 004581 702 FAFRDPVLFIGHLSKSSMLIIDKPWLEVVKTFDAPVH 738 (744)
Q Consensus 702 ~~~~~~~l~~~~~~~~~l~vve~p~~~~~~~lp~~~~ 738 (744)
..+.+...+++....+.+.+++..-..+....|..-+
T Consensus 260 ~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~ 296 (381)
T COG3391 260 VDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNE 296 (381)
T ss_pred ECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccccc
Confidence 6667778888877778888888877777666665544
No 368
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.42 E-value=0.057 Score=49.68 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=62.9
Q ss_pred CCceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCC-EEEEeCCCcceEEEeeccccc--eeEEEEcCCCCE
Q 004581 161 LGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGS-VQFWDSRHGTLLQAHSFHKGD--VNALAAAPSHNR 235 (744)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~-i~vwd~~~~~~~~~~~~h~~~--v~~l~~~~~~~~ 235 (744)
.|+++.....+ ..-..++|+|.. .++.+-.-|+ ..++|....+...++....+. --.=.|+|||.+
T Consensus 57 aGk~v~~~~lp---------aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~ 127 (366)
T COG3490 57 AGKIVFATALP---------ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRL 127 (366)
T ss_pred CCceeeeeecc---------cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcE
Confidence 45666655532 233346777765 4555555555 567888877766655432211 122479999999
Q ss_pred EEeecC-----CCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeee
Q 004581 236 VFSTGS-----DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA 289 (744)
Q Consensus 236 l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 289 (744)
|+..-. -|.|-+||.+.+- ..+..+..|.-.-..+.+.
T Consensus 128 LYATEndfd~~rGViGvYd~r~~f----------------qrvgE~~t~GiGpHev~lm 170 (366)
T COG3490 128 LYATENDFDPNRGVIGVYDAREGF----------------QRVGEFSTHGIGPHEVTLM 170 (366)
T ss_pred EEeecCCCCCCCceEEEEeccccc----------------ceecccccCCcCcceeEEe
Confidence 987533 3789999988543 2455666665555556555
No 369
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.34 E-value=0.19 Score=49.62 Aligned_cols=89 Identities=11% Similarity=-0.084 Sum_probs=44.9
Q ss_pred EEEEEecCCCEEEEEeC---CCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCC
Q 004581 134 LSVTWSADGNMLYSGSS---DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSR 209 (744)
Q Consensus 134 ~~~~~s~dg~~l~t~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~ 209 (744)
+.=+|.+||+.|+.++. ...+.+.|+++++..+.... ..........++++ .++-......|+-.|++
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg--------~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~ 110 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDG--------PGDNTFGGFLSPDDRALYYVKNGRSLRRVDLD 110 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---S--------S-B-TTT-EE-TTSSEEEEEETTTEEEEEETT
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccC--------CCCCccceEEecCCCeEEEEECCCeEEEEECC
Confidence 34578899987777665 45688889988876655442 11111124445666 55444455678888999
Q ss_pred CcceEEEeeccccceeEEEEc
Q 004581 210 HGTLLQAHSFHKGDVNALAAA 230 (744)
Q Consensus 210 ~~~~~~~~~~h~~~v~~l~~~ 230 (744)
+.+....+.....-+-...|.
T Consensus 111 T~e~~~vy~~p~~~~g~gt~v 131 (386)
T PF14583_consen 111 TLEERVVYEVPDDWKGYGTWV 131 (386)
T ss_dssp T--EEEEEE--TTEEEEEEEE
T ss_pred cCcEEEEEECCccccccccee
Confidence 877666666555555445553
No 370
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.32 E-value=0.17 Score=51.26 Aligned_cols=93 Identities=26% Similarity=0.402 Sum_probs=62.4
Q ss_pred EEEEecCCCEEEEEeCCCeEEE---EEcc-CC----ceEEEEEecCCCCCCCCceeEEEEEEec-----------CC-eE
Q 004581 135 SVTWSADGNMLYSGSSDGYIRS---WDAK-LG----YEIYRITVGLGGLGSGPELCIWSLLSLR-----------CG-TL 194 (744)
Q Consensus 135 ~~~~s~dg~~l~t~~~dg~i~v---wd~~-~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----------~~-~l 194 (744)
+++.+|+++.||.+..+..+.+ |+.. .+ ............ .....|+++.+.| |. .+
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~---~~~e~ITsi~clpl~s~~~s~~~~dw~~I 82 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDD---EPGECITSILCLPLSSQKRSTGGPDWTCI 82 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccC---CCCCEEEEEEEEEeecccccCCCCCcEEE
Confidence 4678999999999987766655 6431 12 222222221111 1125777776654 23 68
Q ss_pred EEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcC
Q 004581 195 VSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAP 231 (744)
Q Consensus 195 ~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~ 231 (744)
+.|..+|.|++|.. +|.++..-..|..+|..+.+..
T Consensus 83 ~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 83 AVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred EEEecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 99999999999986 4888877778899999998854
No 371
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.32 E-value=0.012 Score=62.97 Aligned_cols=130 Identities=24% Similarity=0.192 Sum_probs=74.7
Q ss_pred cCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEE---EEccCCceEEEEEecCCCCCCCCce
Q 004581 105 DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRS---WDAKLGYEIYRITVGLGGLGSGPEL 181 (744)
Q Consensus 105 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~v---wd~~~~~~~~~~~~~~~~~~~~~~~ 181 (744)
..+.+.+.++..++. .. ...+.|..+.|||||..+|... ++.|.+ -....|. ..+... .........
T Consensus 428 ~~gql~~~~vd~ge~----~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~~-~~l~~~l~~ 497 (591)
T PRK13616 428 ATGQLARTPVDASAV----AS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTNP-REVGPGLGD 497 (591)
T ss_pred CCceEEEEeccCchh----hh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeeccc-EEeecccCC
Confidence 345666666653332 11 3456799999999999998766 467777 4444454 222110 000112334
Q ss_pred eEEEEEEecCCeEEEEcCCCCEEEEeCCC-cceEEEeec--cccceeEEEEcCCCCEEEeecCCCeEE
Q 004581 182 CIWSLLSLRCGTLVSADSTGSVQFWDSRH-GTLLQAHSF--HKGDVNALAAAPSHNRVFSTGSDGQVI 246 (744)
Q Consensus 182 ~v~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~--h~~~v~~l~~~~~~~~l~~~~~dg~i~ 246 (744)
.+.++.|.+++.|+.+..++.-.+|.+.- |.....+.. ....+..++-+++ .++....+|.+.
T Consensus 498 ~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 498 TAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred ccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 46788999999666666655555554432 332222232 2567777887763 566666777443
No 372
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.31 E-value=0.011 Score=64.10 Aligned_cols=139 Identities=9% Similarity=0.069 Sum_probs=95.3
Q ss_pred ecCCeEEEEEecCCCceeEeecccCccCc-EEEEEEec-----CCCEEEEEeCCCeEEEEEccCCc--eEEEEEecCCCC
Q 004581 104 CDDGCVRIYRITDSDELIYHRSLPRVSGR-VLSVTWSA-----DGNMLYSGSSDGYIRSWDAKLGY--EIYRITVGLGGL 175 (744)
Q Consensus 104 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~-V~~~~~s~-----dg~~l~t~~~dg~i~vwd~~~~~--~~~~~~~~~~~~ 175 (744)
.....|+-.|++.|+.+ ..+..|... |..++=.. +....+.|-.+..+..||.+-.. .+..- ..
T Consensus 501 ~~~~~ly~mDLe~GKVV---~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~-----~k 572 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVV---EEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ-----SK 572 (794)
T ss_pred CCCCceEEEecCCCcEE---EEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecc-----cc
Confidence 45678888899877776 566666543 55543221 12345667778899999987532 22111 11
Q ss_pred CCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcc
Q 004581 176 GSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKAS 251 (744)
Q Consensus 176 ~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~ 251 (744)
.........|++-+.+|+||.|+.+|.||+||--..+....+.+-..+|..|..+.||++|++.+ +..+.+++..
T Consensus 573 ~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred ccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 11345667888889999999999999999999543333344567788999999999999988765 4567777754
No 373
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.28 E-value=0.32 Score=50.79 Aligned_cols=165 Identities=16% Similarity=0.179 Sum_probs=82.3
Q ss_pred eEEEEEcCCCCEEEE-E-c--C-CceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeC---CCcEE
Q 004581 421 IICSTISNSGMLFAY-S-D--H-VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH---DRRIY 492 (744)
Q Consensus 421 i~~~~~s~~g~~la~-~-~--~-~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~---dg~i~ 492 (744)
...+..++|+++|++ . . + ..+.+.++.........|.. +......+....-+..+.+++.... .+.|.
T Consensus 229 ~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~----l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~ 304 (414)
T PF02897_consen 229 FVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKL----LSPREDGVEYYVDHHGDRLYILTNDDAPNGRLV 304 (414)
T ss_dssp EEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEE----EEESSSS-EEEEEEETTEEEEEE-TT-TT-EEE
T ss_pred EEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEE----EeCCCCceEEEEEccCCEEEEeeCCCCCCcEEE
Confidence 667889999999876 2 2 2 23444444431001111111 1111112323222334444444432 45777
Q ss_pred EEEccCCce---eeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEe-CCC--cEEEEECCCcceEEEEecCCCCce
Q 004581 493 VVDVSSSEL---LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN-CFG--DVYIFNLEIQRQHWFISRLEGASV 566 (744)
Q Consensus 493 v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~v 566 (744)
..++.+... ...+.. +...+.-..++..+++|+... .++ .|+++++..+.....++....+.|
T Consensus 305 ~~~l~~~~~~~~~~~l~~-----------~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v 373 (414)
T PF02897_consen 305 AVDLADPSPAEWWTVLIP-----------EDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSV 373 (414)
T ss_dssp EEETTSTSGGGEEEEEE-------------SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEE
T ss_pred EecccccccccceeEEcC-----------CCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEE
Confidence 777765542 223333 455333334444555666554 333 688999994444445544444567
Q ss_pred eEEeecCCCCCeE-EEEecC---CeEEEEEcCCCccccc
Q 004581 567 TAAGFPPQNNNVL-IITTSS---NQVYVFDVEAKQLGEW 601 (744)
Q Consensus 567 ~~l~~sp~~~~~l-~~~~~d---~~v~vwd~~~~~~~~w 601 (744)
..+...+ +.+.+ +..++- .+++.||+.+++++.|
T Consensus 374 ~~~~~~~-~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 374 SGVSGDF-DSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp EEEES-T-T-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred eccCCCC-CCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 7777667 44444 333332 4899999999987553
No 374
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.27 E-value=0.00058 Score=42.68 Aligned_cols=35 Identities=46% Similarity=0.745 Sum_probs=32.0
Q ss_pred ecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEE
Q 004581 124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWD 158 (744)
Q Consensus 124 ~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd 158 (744)
..+..|...|.+++|++++.++++++.|+.+++|+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 56668889999999999999999999999999996
No 375
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.27 E-value=8.6e-05 Score=74.80 Aligned_cols=187 Identities=16% Similarity=0.191 Sum_probs=116.6
Q ss_pred eeEEecCCCeEEEEEccCCce--eEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCC
Q 004581 7 RLFSSSIDGSVSEWDLYDLKQ--KIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS 84 (744)
Q Consensus 7 ~l~~~~~d~~i~iwd~~~~~~--~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (744)
.+++|..+|.|.+-.+....- .....+|....+++||++-..
T Consensus 72 IlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDt------------------------------------ 115 (783)
T KOG1008|consen 72 ILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDT------------------------------------ 115 (783)
T ss_pred hhhhccccCceEEeecCCcccccceecccccccccccccccccH------------------------------------
Confidence 367788888888887754322 224456778888999988642
Q ss_pred CcccccccccccCCeEEEEe----cCCeEEEEEecCC--CceeEeeccc-CccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 004581 85 DSDELHEQSVVEDRRVALAC----DDGCVRIYRITDS--DELIYHRSLP-RVSGRVLSVTWSADGNMLYSGSSDGYIRSW 157 (744)
Q Consensus 85 ~~~~~~~~~~~~~~~la~~~----~dg~i~iwd~~~~--~~~~~~~~~~-~h~~~V~~~~~s~dg~~l~t~~~dg~i~vw 157 (744)
+.||+|- .|..+.|||+.+. .+... ..|. +-.....+++|..+.++|.+|.....+.++
T Consensus 116 -------------n~LAagldkhrnds~~~Iwdi~s~ltvPke~-~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~if 181 (783)
T KOG1008|consen 116 -------------NHLAAGLDKHRNDSSLKIWDINSLLTVPKES-PLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIF 181 (783)
T ss_pred -------------HHHHhhhhhhcccCCccceecccccCCCccc-cccccccccCccccccccCcchhhcccccchhhhh
Confidence 3566663 4678999999855 11111 1111 233455689999999999999999999999
Q ss_pred EccCC-ceEEEEEecCCCCCCCCceeEEEEEEec-CCeEEEEcCCCCEEEEeC-CC-cceEEEeecccc----ceeEEEE
Q 004581 158 DAKLG-YEIYRITVGLGGLGSGPELCIWSLLSLR-CGTLVSADSTGSVQFWDS-RH-GTLLQAHSFHKG----DVNALAA 229 (744)
Q Consensus 158 d~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~vwd~-~~-~~~~~~~~~h~~----~v~~l~~ 229 (744)
|++.. .....+ ....+..+...| ..-.++...||.|.+||. .. ..+++.+..... .+..++|
T Consensus 182 dlRqs~~~~~sv----------nTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ay 251 (783)
T KOG1008|consen 182 DLRQSLDSVSSV----------NTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAY 251 (783)
T ss_pred hhhhhhhhhhhh----------hhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEe
Confidence 98632 111111 223444555666 333444455999999993 22 233333332222 4899999
Q ss_pred cCCCC-EEEeecC-CCeEEEEEcccC
Q 004581 230 APSHN-RVFSTGS-DGQVILYKASCE 253 (744)
Q Consensus 230 ~~~~~-~l~~~~~-dg~i~iw~~~~~ 253 (744)
+|..+ .+++... .++|+++++...
T Consensus 252 cPtrtglla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 252 CPTRTGLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred ccCCcchhhhhccCcceEEEeccccc
Confidence 99532 3444444 678999988653
No 376
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.23 E-value=0.00098 Score=41.57 Aligned_cols=39 Identities=31% Similarity=0.508 Sum_probs=34.8
Q ss_pred cceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEE
Q 004581 211 GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK 249 (744)
Q Consensus 211 ~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~ 249 (744)
++++..+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677888999999999999999999999999999995
No 377
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.16 E-value=0.024 Score=60.71 Aligned_cols=118 Identities=15% Similarity=0.103 Sum_probs=66.5
Q ss_pred cEEEEEEecCCCEEEEEeCC-CeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEE---E
Q 004581 132 RVLSVTWSADGNMLYSGSSD-GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQF---W 206 (744)
Q Consensus 132 ~V~~~~~s~dg~~l~t~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~v---w 206 (744)
..+.-.|+|||+.|++.... ..+++.+-.....+..+....+.........|..+.|+||| +++... ++.|.+ -
T Consensus 398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vv 476 (591)
T PRK13616 398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVE 476 (591)
T ss_pred CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEE
Confidence 37889999999988887643 23444443222334333322111111234569999999999 554433 467766 3
Q ss_pred eCCCcce-E---EEeec-cccceeEEEEcCCCCEEEeecCCCeEEEEEcc
Q 004581 207 DSRHGTL-L---QAHSF-HKGDVNALAAAPSHNRVFSTGSDGQVILYKAS 251 (744)
Q Consensus 207 d~~~~~~-~---~~~~~-h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~ 251 (744)
....|.. + ..+.. -...+..+.|..++.+ +++..++...+|.+.
T Consensus 477 r~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L-~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 477 QTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSL-VVGRSDPEHPVWYVN 525 (591)
T ss_pred eCCCCceeecccEEeecccCCccccceEecCCEE-EEEecCCCCceEEEe
Confidence 4344431 1 11222 2234688999998874 455555545555544
No 378
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.11 E-value=0.19 Score=47.92 Aligned_cols=193 Identities=15% Similarity=0.048 Sum_probs=111.3
Q ss_pred CCeEEEEEcCCCCEEEEEc--CCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEE-
Q 004581 419 RKIICSTISNSGMLFAYSD--HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVD- 495 (744)
Q Consensus 419 ~~i~~~~~s~~g~~la~~~--~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d- 495 (744)
..+.+.++|++|+.+|+-. ++.-.+|-... +...... + ....+..-.|++++...+....+...+++.
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~-~~~~~~~------~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~ 94 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA-GGPVRPV------L--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRD 94 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcC-CCcceee------c--cCCccccccccCCCCEEEEEcCCCceEEEEe
Confidence 4688999999999888744 66666666654 2222211 1 112567778999988888777666666664
Q ss_pred ccCCceee-eeccCcccccccCCCCCCceEEEEECCCCCEEEEEe---CCCcEEEEECC---CcceE-----EEEecCCC
Q 004581 496 VSSSELLH-TFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN---CFGDVYIFNLE---IQRQH-----WFISRLEG 563 (744)
Q Consensus 496 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~---~dg~i~iwd~~---~~~~~-----~~~~~~~~ 563 (744)
..+++... .+... .-...|+++.+||||..+|... .++.|+|=-+. .+... ..+.....
T Consensus 95 ~~~g~~~~~~v~~~---------~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~ 165 (253)
T PF10647_consen 95 SASGTGEPVEVDWP---------GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL 165 (253)
T ss_pred cCCCcceeEEeccc---------ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccccc
Confidence 33343221 12210 0122899999999999998776 35677776553 22011 11111123
Q ss_pred CceeEEeecCCCCCeEEEEecCC-eEEE-EEcCCCccccccccccCCcccccccCCCceEEEEeCCCCCCcEEEEEcCce
Q 004581 564 ASVTAAGFPPQNNNVLIITTSSN-QVYV-FDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARA 641 (744)
Q Consensus 564 ~~v~~l~~sp~~~~~l~~~~~d~-~v~v-wd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~ 641 (744)
..++.++|.+ ++.+++.+...+ .+.. ..+..+..+. +......+.-++...+ +..+++.+...
T Consensus 166 ~~v~~v~W~~-~~~L~V~~~~~~~~~~~~v~~dG~~~~~------------l~~~~~~~~v~a~~~~--~~~~~~t~~~~ 230 (253)
T PF10647_consen 166 SDVTDVAWSD-DSTLVVLGRSAGGPVVRLVSVDGGPSTP------------LPSVNLGVPVVAVAAS--PSTVYVTDDGG 230 (253)
T ss_pred CcceeeeecC-CCEEEEEeCCCCCceeEEEEccCCcccc------------cCCCCCCcceEEeeCC--CcEEEEECCCc
Confidence 5889999999 777666665544 3333 5555554221 2122222333333332 33477777777
Q ss_pred EEE
Q 004581 642 MCV 644 (744)
Q Consensus 642 ~~~ 644 (744)
++.
T Consensus 231 ~~~ 233 (253)
T PF10647_consen 231 VLQ 233 (253)
T ss_pred EEE
Confidence 775
No 379
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.04 E-value=0.36 Score=47.04 Aligned_cols=149 Identities=17% Similarity=0.101 Sum_probs=89.4
Q ss_pred CCCCeeEEecCCCeEEEEEcc-CCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCC
Q 004581 3 LPGGRLFSSSIDGSVSEWDLY-DLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESE 81 (744)
Q Consensus 3 ~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (744)
..+++|+.|+.+| |.++++. ..+.....+ ...|..+...|+-+
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~--------------------------------- 48 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELN--------------------------------- 48 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccC---------------------------------
Confidence 3478899999998 8999983 333333333 34499999999873
Q ss_pred CCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeec-----------ccCccCcEEEEE---EecCCCEEEE
Q 004581 82 NDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRS-----------LPRVSGRVLSVT---WSADGNMLYS 147 (744)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~h~~~V~~~~---~s~dg~~l~t 147 (744)
.|++-+ |+.+.++++..-........ -......+...+ -...+..|+.
T Consensus 49 -----------------~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~v 110 (275)
T PF00780_consen 49 -----------------LLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCV 110 (275)
T ss_pred -----------------EEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEE
Confidence 444443 49999999873332210000 111223444444 2223345555
Q ss_pred EeCCCeEEEEEccCC-----ceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEe
Q 004581 148 GSSDGYIRSWDAKLG-----YEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAH 217 (744)
Q Consensus 148 ~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 217 (744)
+. ...|.+|.+... +....+. ....+.+++|.++ .++.|. .....+.|+.++.....+
T Consensus 111 a~-kk~i~i~~~~~~~~~f~~~~ke~~---------lp~~~~~i~~~~~-~i~v~~-~~~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 111 AV-KKKILIYEWNDPRNSFSKLLKEIS---------LPDPPSSIAFLGN-KICVGT-SKGFYLIDLNTGSPSELL 173 (275)
T ss_pred EE-CCEEEEEEEECCcccccceeEEEE---------cCCCcEEEEEeCC-EEEEEe-CCceEEEecCCCCceEEe
Confidence 54 458999888653 3445554 4577888888843 555555 444888898876654433
No 380
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.018 Score=62.58 Aligned_cols=105 Identities=26% Similarity=0.354 Sum_probs=74.4
Q ss_pred CCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCC
Q 004581 97 DRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLG 176 (744)
Q Consensus 97 ~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 176 (744)
+..+|+|++.|.|-..|+... +.....-..-.++|++++|+.||+.++.|-.+|.|.+||+.+++.++.+....
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~---- 172 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHG---- 172 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecC----
Confidence 457899999999999998643 21112223346799999999999999999999999999999999998887421
Q ss_pred CCCceeEEEEEEecCCeEEEEcCCCCEEEEeCC
Q 004581 177 SGPELCIWSLLSLRCGTLVSADSTGSVQFWDSR 209 (744)
Q Consensus 177 ~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~ 209 (744)
..+.+.+....++.+..+++++..|. +|.+.
T Consensus 173 ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 173 APVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred CccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 12333333333333337888877776 56543
No 381
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.79 E-value=0.13 Score=47.89 Aligned_cols=173 Identities=14% Similarity=0.210 Sum_probs=107.8
Q ss_pred ccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeC
Q 004581 461 RQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC 540 (744)
Q Consensus 461 ~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~ 540 (744)
....+....+.++.|+|+.+.|++......-.|+=..+|++++++.-. .-...-.+.+..+|++.++--.
T Consensus 79 kpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~----------g~~DpE~Ieyig~n~fvi~dER 148 (316)
T COG3204 79 KPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT----------GFSDPETIEYIGGNQFVIVDER 148 (316)
T ss_pred cccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc----------ccCChhHeEEecCCEEEEEehh
Confidence 444555557999999999999998887776666555689999887642 2334556788889998888888
Q ss_pred CCcEEEEECCCcceEEEEec--------CC-CCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCccc
Q 004581 541 FGDVYIFNLEIQRQHWFISR--------LE-GASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPR 611 (744)
Q Consensus 541 dg~i~iwd~~~~~~~~~~~~--------~~-~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~ 611 (744)
++.+.++.++.......+.. .+ +...-.++|.| ..+.|.++=+-+-+.||.++...- ..+..... .+.
T Consensus 149 ~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~-~l~~~~~~-~~~ 225 (316)
T COG3204 149 DRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPS-SLSVHASL-DPT 225 (316)
T ss_pred cceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCc-cccccccc-Ccc
Confidence 99999998875532222111 11 34567899999 778888888877777777764420 00000000 011
Q ss_pred ccc-cCCCceEEEEeCCCCCCcEEEEEcC-ceEEEEeC
Q 004581 612 RYQ-EFPGEVIGLSFSPSPSSSSVIIYSA-RAMCVIDF 647 (744)
Q Consensus 612 ~~~-~~~~~v~~i~fspdg~~~~~~~~~~-~~~~~~~~ 647 (744)
... -.-..+.++.|++. ++..+++... ..+..+|.
T Consensus 226 ~~~~~f~~DvSgl~~~~~-~~~LLVLS~ESr~l~Evd~ 262 (316)
T COG3204 226 ADRDLFVLDVSGLEFNAI-TNSLLVLSDESRRLLEVDL 262 (316)
T ss_pred cccceEeeccccceecCC-CCcEEEEecCCceEEEEec
Confidence 000 01246888999986 4444444333 23444554
No 382
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.79 E-value=0.24 Score=44.28 Aligned_cols=97 Identities=12% Similarity=0.082 Sum_probs=68.2
Q ss_pred EEEEEcCCCCEEEE--EcCCceEEEEeecCCC----CCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEE
Q 004581 422 ICSTISNSGMLFAY--SDHVKPSLFELKKGKV----GQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVD 495 (744)
Q Consensus 422 ~~~~~s~~g~~la~--~~~~~v~l~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d 495 (744)
..++|+.+.+.+.+ +.+.+|..|+.+...+ ...++++++.+...+ ...-.+++..+|++.++.-..++|..+|
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~-~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFES-LEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCC-CCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 46778888777666 5677777788543211 234555555322222 1344566677888888888899999999
Q ss_pred ccCCceeeeeccCcccccccCCCCCCceEEEEECC
Q 004581 496 VSSSELLHTFTPCREEHDREIQPSEPPITKMFTSS 530 (744)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 530 (744)
..+|+.+.++.- ....|+++||--
T Consensus 240 p~tGK~L~eikl-----------Pt~qitsccFgG 263 (310)
T KOG4499|consen 240 PTTGKILLEIKL-----------PTPQITSCCFGG 263 (310)
T ss_pred CCCCcEEEEEEc-----------CCCceEEEEecC
Confidence 999999999987 588899999953
No 383
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.78 E-value=0.48 Score=47.31 Aligned_cols=110 Identities=19% Similarity=0.139 Sum_probs=59.1
Q ss_pred cEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecC----CeEEEEcC-C------
Q 004581 132 RVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRC----GTLVSADS-T------ 200 (744)
Q Consensus 132 ~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~l~s~~~-d------ 200 (744)
.-++|+|.|||++|++ ...|.|++++ ..+.....+... .............++++|+ ++|..... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~-~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADL-PEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE--TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceeccc-ccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 3578999999987775 5599999999 555542222211 1223345678899999995 53333222 1
Q ss_pred --CCEEEEeCCCc-------c-eEEEeec---cccceeEEEEcCCCCEEEeecCCCe
Q 004581 201 --GSVQFWDSRHG-------T-LLQAHSF---HKGDVNALAAAPSHNRVFSTGSDGQ 244 (744)
Q Consensus 201 --g~i~vwd~~~~-------~-~~~~~~~---h~~~v~~l~~~~~~~~l~~~~~dg~ 244 (744)
..|.-|....+ + .+..+.. ....-..|+|.|||.+.++.+..+.
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 12333433322 1 1112222 2234566999999976666655544
No 384
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.011 Score=64.30 Aligned_cols=99 Identities=14% Similarity=0.199 Sum_probs=70.6
Q ss_pred CeeEEecCCCeEEEEEccC-CceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCC
Q 004581 6 GRLFSSSIDGSVSEWDLYD-LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS 84 (744)
Q Consensus 6 ~~l~~~~~d~~i~iwd~~~-~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (744)
..++.|+..|.|...|+.. .++...=..-+++|++++|+.+|
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg------------------------------------- 142 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDG------------------------------------- 142 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCC-------------------------------------
Confidence 4578888899999888754 22222222346899999999999
Q ss_pred CcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCc---EEEEEEecCCCEEEEEeCCCeEEEEEc
Q 004581 85 DSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGR---VLSVTWSADGNMLYSGSSDGYIRSWDA 159 (744)
Q Consensus 85 ~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~---V~~~~~s~dg~~l~t~~~dg~i~vwd~ 159 (744)
.+++.|-.+|.|.+||...++.+ +.+.-|..+ |..+.+..++..++++...|. +|.+
T Consensus 143 -------------~~l~~G~~~G~V~v~D~~~~k~l---~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 143 -------------SLLLAGLGDGHVTVWDMHRAKIL---KVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred -------------ceeccccCCCcEEEEEccCCcce---eeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 68999999999999999977777 444444333 444455556667888877776 6664
No 385
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.69 E-value=0.7 Score=45.11 Aligned_cols=155 Identities=13% Similarity=0.105 Sum_probs=90.5
Q ss_pred EEEEEecCCCceeEeec-ccCc-cCcEEEEEEecCCCEEEEEeC---------CCeEEEEEcc-CCceEEEEEecCCCCC
Q 004581 109 VRIYRITDSDELIYHRS-LPRV-SGRVLSVTWSADGNMLYSGSS---------DGYIRSWDAK-LGYEIYRITVGLGGLG 176 (744)
Q Consensus 109 i~iwd~~~~~~~~~~~~-~~~h-~~~V~~~~~s~dg~~l~t~~~---------dg~i~vwd~~-~~~~~~~~~~~~~~~~ 176 (744)
+.+++.+.+........ ..+. ..+-+.+...|+|.+-++... ...-.+|-+. .+..+..+.
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~------- 159 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLD------- 159 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeec-------
Confidence 55666654444121122 2222 245677888999987776443 1112444444 455555554
Q ss_pred CCCceeEEEEEEecCC-eEEEEcC-CCCEEEEeCCC--c----c-eEEEeeccccceeEEEEcCCCCEEEeecCCC-eEE
Q 004581 177 SGPELCIWSLLSLRCG-TLVSADS-TGSVQFWDSRH--G----T-LLQAHSFHKGDVNALAAAPSHNRVFSTGSDG-QVI 246 (744)
Q Consensus 177 ~~~~~~v~~~~~~~~~-~l~s~~~-dg~i~vwd~~~--~----~-~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg-~i~ 246 (744)
.+-..-+.++|+||+ .|+.+.+ .+.|.-|++.. + + ....+..+.+..-.++...+|.+-+++..+| .|.
T Consensus 160 -~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~ 238 (307)
T COG3386 160 -DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVV 238 (307)
T ss_pred -CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEE
Confidence 456667889999999 5555554 57788887752 1 1 1122223456666788888887665554444 899
Q ss_pred EEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeee
Q 004581 247 LYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA 289 (744)
Q Consensus 247 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 289 (744)
.|+.. +. .+.........+.+++|.
T Consensus 239 ~~~pd-G~-----------------l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 239 RFNPD-GK-----------------LLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred EECCC-Cc-----------------EEEEEECCCCCCccceEe
Confidence 99887 33 245555555667777773
No 386
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.033 Score=55.76 Aligned_cols=147 Identities=10% Similarity=0.055 Sum_probs=100.2
Q ss_pred CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCE-------EEEEeCCCeEEEEEccCCce-EEEEE
Q 004581 98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNM-------LYSGSSDGYIRSWDAKLGYE-IYRIT 169 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~-------l~t~~~dg~i~vwd~~~~~~-~~~~~ 169 (744)
-.|..+.....++--|++.|+.+ ....-|.. |.-+.+.|+.+. -+.|-.|..|.-||.+-... .....
T Consensus 347 lil~~~~~~~~l~klDIE~GKIV---eEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIV---EEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred eEeeCCCCcCcceeeecccceee---eEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 35566667777888899877766 55555555 778888887542 23455688999999863222 11111
Q ss_pred ecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEE
Q 004581 170 VGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK 249 (744)
Q Consensus 170 ~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~ 249 (744)
. .+.........|.+-..+|+++.|+.+|.|++||--..+....+.+-..+|..+..+.+|.+|++.+ +..+.+-+
T Consensus 423 q---~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~ 498 (644)
T KOG2395|consen 423 Q---SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLID 498 (644)
T ss_pred e---ccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEE
Confidence 1 1111234556777778889999999999999999732333355778889999999999999887664 55666666
Q ss_pred ccc
Q 004581 250 ASC 252 (744)
Q Consensus 250 ~~~ 252 (744)
..-
T Consensus 499 t~~ 501 (644)
T KOG2395|consen 499 TLI 501 (644)
T ss_pred Eec
Confidence 543
No 387
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.024 Score=56.70 Aligned_cols=147 Identities=14% Similarity=0.138 Sum_probs=101.4
Q ss_pred eEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCcccccccc----ccccCCccccCCCCCCCCCcCccCCCC
Q 004581 8 LFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTN----SDHIGNGYLNDKSNDSDDHETSESEND 83 (744)
Q Consensus 8 l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (744)
|.++.....|.-.|++.|+.+...+.|.. |.-+.+.|+.+.-=..... -..+.+.-|+.+-.....-........
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 56667777888899999999999887665 8888899887532111111 112334444444333322233333444
Q ss_pred CCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 004581 84 SDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDA 159 (744)
Q Consensus 84 ~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~ 159 (744)
..+....|.....+.++|+|+.+|.|++||-. +.... ..|.+-..+|..+..+.||++++..+ +.++.+-++
T Consensus 428 ~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri-~~~AK--TAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 428 STKNNFSCFATTESGYIVVGSLKGDIRLYDRI-GRRAK--TALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred ccccccceeeecCCceEEEeecCCcEEeehhh-hhhhh--hcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 45566677777788899999999999999974 33332 67788899999999999999988766 447777765
No 388
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.62 E-value=0.0043 Score=54.94 Aligned_cols=70 Identities=14% Similarity=0.184 Sum_probs=45.6
Q ss_pred CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEE-EEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEE
Q 004581 98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVL-SVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRIT 169 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~-~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 169 (744)
..+++|+.+|.|.+|+........ .....-...|. -+.-..++.+..+++.||.||.|+++-++.+....
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~--d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g 141 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHS--DRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG 141 (238)
T ss_pred ceEEeecccceEEEecCCccchHH--HhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeec
Confidence 489999999999999985222111 11111222332 23333455678889999999999998877766554
No 389
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.60 E-value=0.26 Score=45.57 Aligned_cols=144 Identities=15% Similarity=0.130 Sum_probs=89.3
Q ss_pred cccEEEEeeCCCE-EEEEeCCC-cEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeC-----C
Q 004581 469 FAHSMIFSYDSSQ-LIIAGHDR-RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC-----F 541 (744)
Q Consensus 469 ~v~~i~~spd~~~-l~~~~~dg-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~-----d 541 (744)
....|+|+|...+ ++.+-.-| ...++|....+...++..... ..---.=.|||||.+|.+.-. .
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~---------RHfyGHGvfs~dG~~LYATEndfd~~r 139 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG---------RHFYGHGVFSPDGRLLYATENDFDPNR 139 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccC---------ceeecccccCCCCcEEEeecCCCCCCC
Confidence 4567888886554 55555555 467899887776666554110 111223479999999987643 3
Q ss_pred CcEEEEECCCcce-EEEEecCCCCceeEEeecCCCCCeEEEEec------C------------CeEEEEEcCCCcccccc
Q 004581 542 GDVYIFNLEIQRQ-HWFISRLEGASVTAAGFPPQNNNVLIITTS------S------------NQVYVFDVEAKQLGEWS 602 (744)
Q Consensus 542 g~i~iwd~~~~~~-~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~------d------------~~v~vwd~~~~~~~~ws 602 (744)
|.|-|||...+-. .-.++. |+-.+..+.|.+ ||+.|+++.. | -++.+.|..+|++.+
T Consensus 140 GViGvYd~r~~fqrvgE~~t-~GiGpHev~lm~-DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~lie-- 215 (366)
T COG3490 140 GVIGVYDAREGFQRVGEFST-HGIGPHEVTLMA-DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE-- 215 (366)
T ss_pred ceEEEEecccccceeccccc-CCcCcceeEEec-CCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhh--
Confidence 6899999985432 233433 556778899999 9999998753 1 134445544554422
Q ss_pred ccccCCcccccccCCCceEEEEeCCCCC
Q 004581 603 MQHTFVLPRRYQEFPGEVIGLSFSPSPS 630 (744)
Q Consensus 603 ~~~~~~~~~~~~~~~~~v~~i~fspdg~ 630 (744)
...+|..+ +.-.+..+...+||.
T Consensus 216 ---kh~Lp~~l--~~lSiRHld~g~dgt 238 (366)
T COG3490 216 ---KHTLPASL--RQLSIRHLDIGRDGT 238 (366)
T ss_pred ---hccCchhh--hhcceeeeeeCCCCc
Confidence 11233222 345788889888854
No 390
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.59 E-value=0.0022 Score=56.77 Aligned_cols=143 Identities=17% Similarity=0.109 Sum_probs=81.9
Q ss_pred eEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCC
Q 004581 99 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSG 178 (744)
Q Consensus 99 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 178 (744)
.+..-+.||.|+=+++...+.- .+.-.-|...-.-+.+ +..|+.|+.+|.|.+|+..-......+.. .+
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s--~rse~~~~e~~~v~~~---~~~~~vG~~dg~v~~~n~n~~g~~~d~~~------s~ 100 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKES--CRSERFIDEGQRVVTA---SAKLMVGTSDGAVYVFNWNLEGAHSDRVC------SG 100 (238)
T ss_pred hhccccCCcccccchhhhhhhh--hhhhhhhhcceeeccc---CceEEeecccceEEEecCCccchHHHhhh------cc
Confidence 3444566777777776421111 0111122222222222 35688999999999998762211111110 01
Q ss_pred CceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccc-cceeEEEEcCCCCEEEee--cCCCeEEEEEccc
Q 004581 179 PELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHK-GDVNALAAAPSHNRVFST--GSDGQVILYKASC 252 (744)
Q Consensus 179 ~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~~~--~~dg~i~iw~~~~ 252 (744)
.......+.-..++ ...+++.+|.|+.|++.-++.+.....|. .++..+..+..+..+..+ +.|..++.|++..
T Consensus 101 ~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 101 EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 22222222223344 77889999999999999888888777777 555555555555666665 6666667776654
No 391
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.59 E-value=0.053 Score=59.10 Aligned_cols=144 Identities=17% Similarity=0.115 Sum_probs=93.2
Q ss_pred ecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCccccc
Q 004581 11 SSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELH 90 (744)
Q Consensus 11 ~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (744)
......|.-.|+++|+.+...+.|... .-..|.|+.+.-
T Consensus 500 ~~~~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~a---------------------------------------- 538 (794)
T PF08553_consen 500 PNNPNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFA---------------------------------------- 538 (794)
T ss_pred CCCCCceEEEecCCCcEEEEeecCCCc-ceeEeccccccc----------------------------------------
Confidence 345678999999999999999887643 233444554211
Q ss_pred ccccccCCeEEEEecCCeEEEEEecCCC-ceeE--eecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEE
Q 004581 91 EQSVVEDRRVALACDDGCVRIYRITDSD-ELIY--HRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYR 167 (744)
Q Consensus 91 ~~~~~~~~~la~~~~dg~i~iwd~~~~~-~~~~--~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~ 167 (744)
--.+.....|-.++.+..||..-.+ .+.. .+.+ .......|++-+.+| +||.|+.+|.||+||- .|....+
T Consensus 539 ---qlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT 612 (794)
T PF08553_consen 539 ---QLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKT 612 (794)
T ss_pred ---ccCCCceEEEECCCceEEeccCCCCCceeecccccc-ccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhh
Confidence 0001346677788899999987332 2211 0111 234567788777666 6999999999999994 4433222
Q ss_pred EEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeC
Q 004581 168 ITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDS 208 (744)
Q Consensus 168 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~ 208 (744)
... +...+|..|..+.||..+.+..+..|.+++.
T Consensus 613 ~lp-------~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 613 ALP-------GLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred cCC-------CCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 211 5678999999999995555555666777664
No 392
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.53 E-value=0.38 Score=51.81 Aligned_cols=145 Identities=15% Similarity=0.136 Sum_probs=73.7
Q ss_pred CCeEEEEecC------CeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCC-----eEEEEEccCCceE
Q 004581 97 DRRVALACDD------GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDG-----YIRSWDAKLGYEI 165 (744)
Q Consensus 97 ~~~la~~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg-----~i~vwd~~~~~~~ 165 (744)
+...++|+.| ..+..||...++ ......+.......-.... +|..-|.|+.|| +|-.||..+.+--
T Consensus 333 ~~lYv~GG~~~~~~~l~~ve~YD~~~~~-W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~ 409 (571)
T KOG4441|consen 333 GKLYVVGGYDSGSDRLSSVERYDPRTNQ-WTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWT 409 (571)
T ss_pred CEEEEEccccCCCcccceEEEecCCCCc-eeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCccc
Confidence 3478888888 367778876544 2212223222222222222 688888998886 4677777654322
Q ss_pred EEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCC------CEEEEeCCCcceEEEeeccccce-eEEEEcCCCCEEE
Q 004581 166 YRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTG------SVQFWDSRHGTLLQAHSFHKGDV-NALAAAPSHNRVF 237 (744)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg------~i~vwd~~~~~~~~~~~~h~~~v-~~l~~~~~~~~l~ 237 (744)
..-.. .....-.+++.. +| ..++|+.++ .+..||..+++....-....... ..++. -++...+
T Consensus 410 ~va~m-------~~~r~~~gv~~~-~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYv 480 (571)
T KOG4441|consen 410 PVAPM-------LTRRSGHGVAVL-GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYV 480 (571)
T ss_pred ccCCC-------CcceeeeEEEEE-CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEE
Confidence 11110 011111122222 45 566676443 57889988765543222111111 11232 2466777
Q ss_pred eecCCCe-----EEEEEcccC
Q 004581 238 STGSDGQ-----VILYKASCE 253 (744)
Q Consensus 238 ~~~~dg~-----i~iw~~~~~ 253 (744)
.||.|+. |..||..+.
T Consensus 481 vGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 481 VGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred ECCccCCCccceEEEEcCCCC
Confidence 7887763 556666553
No 393
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.47 E-value=1.4 Score=45.98 Aligned_cols=98 Identities=16% Similarity=0.187 Sum_probs=55.5
Q ss_pred ecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCC-----------CeEEEEEccCCceE--EEEEe
Q 004581 104 CDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD-----------GYIRSWDAKLGYEI--YRITV 170 (744)
Q Consensus 104 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~d-----------g~i~vwd~~~~~~~--~~~~~ 170 (744)
++...|+++|+.+++.+. ..+.... -..++|.+|++.|+....+ ..|+.|.+.+...- ..+..
T Consensus 147 ~e~~~l~v~Dl~tg~~l~--d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~ 222 (414)
T PF02897_consen 147 SEWYTLRVFDLETGKFLP--DGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEE 222 (414)
T ss_dssp SSEEEEEEEETTTTEEEE--EEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-
T ss_pred CceEEEEEEECCCCcCcC--Ccccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEee
Confidence 334569999998775543 2222211 2239999999887665432 24788888776433 22321
Q ss_pred cCCCCCCCCceeEEEEEEecCC-e-EEEEcCC---CCEEEEeCCCc
Q 004581 171 GLGGLGSGPELCIWSLLSLRCG-T-LVSADST---GSVQFWDSRHG 211 (744)
Q Consensus 171 ~~~~~~~~~~~~v~~~~~~~~~-~-l~s~~~d---g~i~vwd~~~~ 211 (744)
. ........+..++|+ + ++..... ..+.+.|+..+
T Consensus 223 ~------~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 223 P------DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp T------TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred c------CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 0 112225678889998 3 3333332 34777788764
No 394
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.44 E-value=0.0092 Score=38.77 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=29.1
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEECC
Q 004581 519 SEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE 550 (744)
Q Consensus 519 ~~~~i~~l~~spdg~~las~~~dg~i~iwd~~ 550 (744)
....|..++|+|...+||.++.+|.|.+|.++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 35569999999999999999999999999993
No 395
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.41 E-value=0.61 Score=44.42 Aligned_cols=95 Identities=16% Similarity=0.067 Sum_probs=50.5
Q ss_pred eEEEEecCCeEEEEE-ecCCCceeEeecccCccCcEEEEEEecCCCEEEEEe---CCCeEEEEEccCCce--EEEEEecC
Q 004581 99 RVALACDDGCVRIYR-ITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGS---SDGYIRSWDAKLGYE--IYRITVGL 172 (744)
Q Consensus 99 ~la~~~~dg~i~iwd-~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~---~dg~i~vwd~~~~~~--~~~~~~~~ 172 (744)
..+....+...+++. ..++...........-.+.|.++.+||||..+|... .++.|.+=-+..... ...+..+
T Consensus 79 ~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~- 157 (253)
T PF10647_consen 79 VWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGP- 157 (253)
T ss_pred EEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccc-
Confidence 444444555556663 222322221112222222899999999999888765 356777765532111 1111111
Q ss_pred CCCCCCCceeEEEEEEecCCeE
Q 004581 173 GGLGSGPELCIWSLLSLRCGTL 194 (744)
Q Consensus 173 ~~~~~~~~~~v~~~~~~~~~~l 194 (744)
..........+..+.|.+++.|
T Consensus 158 ~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 158 RRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred eEecccccCcceeeeecCCCEE
Confidence 1111134568899999999943
No 396
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.40 E-value=0.011 Score=38.48 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=30.6
Q ss_pred cCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceE
Q 004581 130 SGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 165 (744)
Q Consensus 130 ~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~ 165 (744)
...|.+++|+|..++||.++.+|.|.++.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 356999999999999999999999999998 55543
No 397
>PHA02713 hypothetical protein; Provisional
Probab=96.31 E-value=0.14 Score=55.30 Aligned_cols=71 Identities=11% Similarity=0.101 Sum_probs=38.6
Q ss_pred cccccccCCeEEEEecC------CeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCC-----eEEEEE
Q 004581 90 HEQSVVEDRRVALACDD------GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDG-----YIRSWD 158 (744)
Q Consensus 90 ~~~~~~~~~~la~~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg-----~i~vwd 158 (744)
+.....++...++|+.+ ..+..||..++.- .....+.........+ .-+|+..+.||.++ ++..||
T Consensus 297 ~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W-~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Yd 373 (557)
T PHA02713 297 YASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIH-VELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYT 373 (557)
T ss_pred eEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeE-eeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEE
Confidence 33444566777777753 3477788764432 1112222111122222 23677778887653 478899
Q ss_pred ccCCc
Q 004581 159 AKLGY 163 (744)
Q Consensus 159 ~~~~~ 163 (744)
..+.+
T Consensus 374 p~~~~ 378 (557)
T PHA02713 374 MGDDK 378 (557)
T ss_pred CCCCe
Confidence 87654
No 398
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.31 E-value=2.5 Score=47.12 Aligned_cols=220 Identities=14% Similarity=0.099 Sum_probs=118.2
Q ss_pred CCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCC
Q 004581 5 GGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS 84 (744)
Q Consensus 5 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (744)
|++|+.++.++.|.-.|..||+.+-++..... +........ -.+..||......
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~-~~~~~~~~~------------cRGvay~~~p~~~------------- 247 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLK-TEAGRQHQT------------CRGVSYYDAPAAA------------- 247 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCC-ccccccccc------------ccceEEecCCccc-------------
Confidence 77899999999999999999999988764321 110000000 0112222210000
Q ss_pred CcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcE-------------EEEEEec--CCCEEEEEe
Q 004581 85 DSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRV-------------LSVTWSA--DGNMLYSGS 149 (744)
Q Consensus 85 ~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V-------------~~~~~s~--dg~~l~t~~ 149 (744)
............+.+++.++.|+.+.-.|..+++.+. .+. ..+.| ..+.-+| .+..+++|+
T Consensus 248 ~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~TGk~~W---~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~ 323 (764)
T TIGR03074 248 AGPAAPAAPADCARRIILPTSDARLIALDADTGKLCE---DFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGG 323 (764)
T ss_pred ccccccccccccCCEEEEecCCCeEEEEECCCCCEEE---Eec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEe
Confidence 0000000011233578888889998888888777652 221 11111 0111111 134566664
Q ss_pred C----------CCeEEEEEccCCceEEEEEecCCCCC----CC-----CceeEE-EEEEecCC-eEEEEc----------
Q 004581 150 S----------DGYIRSWDAKLGYEIYRITVGLGGLG----SG-----PELCIW-SLLSLRCG-TLVSAD---------- 198 (744)
Q Consensus 150 ~----------dg~i~vwd~~~~~~~~~~~~~~~~~~----~~-----~~~~v~-~~~~~~~~-~l~s~~---------- 198 (744)
. +|.|+-+|+++|+.+.++........ .+ ....+| ..++.+.. +++.+.
T Consensus 324 ~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~ 403 (764)
T TIGR03074 324 RVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGG 403 (764)
T ss_pred cccccccccCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCC
Confidence 3 68899999999999998874211000 00 001111 12333332 222211
Q ss_pred --------CCCCEEEEeCCCcceEEEeeccccceeE---------EEEcC-CCC---EEEeecCCCeEEEEEcccCc
Q 004581 199 --------STGSVQFWDSRHGTLLQAHSFHKGDVNA---------LAAAP-SHN---RVFSTGSDGQVILYKASCES 254 (744)
Q Consensus 199 --------~dg~i~vwd~~~~~~~~~~~~h~~~v~~---------l~~~~-~~~---~l~~~~~dg~i~iw~~~~~~ 254 (744)
..+.|.-.|.++|+....++....++.. +.+.. +|+ .++.++.+|.+.++|..+++
T Consensus 404 ~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 404 DRTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred ccccCcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 2355777888999988777652222221 12222 553 78889999999999999887
No 399
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.30 E-value=0.97 Score=42.29 Aligned_cols=113 Identities=12% Similarity=0.136 Sum_probs=77.7
Q ss_pred CcEEEEEEecCCCEEEEEeCCC--eEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeC
Q 004581 131 GRVLSVTWSADGNMLYSGSSDG--YIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDS 208 (744)
Q Consensus 131 ~~V~~~~~s~dg~~l~t~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~ 208 (744)
.-...+.|..+|.++-+.+.-| .|+.+|+.+|+.......+ ...--..++...|......-.++...+||.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~-------~~~FgEGit~~~d~l~qLTWk~~~~f~yd~ 117 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP-------PRYFGEGITILGDKLYQLTWKEGTGFVYDP 117 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T-------TT--EEEEEEETTEEEEEESSSSEEEEEET
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC-------ccccceeEEEECCEEEEEEecCCeEEEEcc
Confidence 3456788877888888887755 7999999999988877753 233334455555555566677899999999
Q ss_pred CCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccC
Q 004581 209 RHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE 253 (744)
Q Consensus 209 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~ 253 (744)
.+-+.+.++.. .+.=..|+ .|++.|+.......+.++|..+-
T Consensus 118 ~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f 159 (264)
T PF05096_consen 118 NTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETF 159 (264)
T ss_dssp TTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-
T ss_pred ccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCccc
Confidence 99988888865 35566777 45677777766778888887653
No 400
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.26 E-value=1.5 Score=44.01 Aligned_cols=148 Identities=16% Similarity=0.141 Sum_probs=71.7
Q ss_pred CeEEEEe-cCCeEEEEEec-CCCceeEeecccC---cc----CcEEEEEEecCCCEEEEEeC------CCeEEEEEccCC
Q 004581 98 RRVALAC-DDGCVRIYRIT-DSDELIYHRSLPR---VS----GRVLSVTWSADGNMLYSGSS------DGYIRSWDAKLG 162 (744)
Q Consensus 98 ~~la~~~-~dg~i~iwd~~-~~~~~~~~~~~~~---h~----~~V~~~~~s~dg~~l~t~~~------dg~i~vwd~~~~ 162 (744)
++|+..+ ..+.|+|.|+. +.......+++.. +. ..-..+---|+|+.++|+-. -|-+.+.|-++.
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf 167 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF 167 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence 5666666 78899999998 3334433344442 11 11222333468999888632 356888998877
Q ss_pred ceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEc--------------------CCCCEEEEeCCCcceEEEeeccc
Q 004581 163 YEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSAD--------------------STGSVQFWDSRHGTLLQAHSFHK 221 (744)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~--------------------~dg~i~vwd~~~~~~~~~~~~h~ 221 (744)
+.......+. +....-+.+.+.|.. .++|.. ...++.+||+.+.+.++++..-.
T Consensus 168 ~v~g~We~~~-----~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~ 242 (461)
T PF05694_consen 168 EVKGRWEKDR-----GPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE 242 (461)
T ss_dssp -EEEE--SB------TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T
T ss_pred cccceeccCC-----CCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC
Confidence 7776665321 223445566677765 566553 23579999999999999997532
Q ss_pred --cceeEEEEcCC--CCEEEee-cCCCeEEEEEc
Q 004581 222 --GDVNALAAAPS--HNRVFST-GSDGQVILYKA 250 (744)
Q Consensus 222 --~~v~~l~~~~~--~~~l~~~-~~dg~i~iw~~ 250 (744)
.....+.|..+ ..+=+++ ....+|..|-.
T Consensus 243 ~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k 276 (461)
T PF05694_consen 243 EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYK 276 (461)
T ss_dssp TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE
T ss_pred CCCceEEEEecCCCCccceEEEEeccceEEEEEE
Confidence 34677888654 4444443 34555665544
No 401
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.23 E-value=1.5 Score=43.83 Aligned_cols=57 Identities=19% Similarity=0.251 Sum_probs=37.5
Q ss_pred EEEEEEecCCeEEEEcCCCCEEEEeCCCcce---EEEe----eccccceeEEEEcCC---CCEEEeec
Q 004581 183 IWSLLSLRCGTLVSADSTGSVQFWDSRHGTL---LQAH----SFHKGDVNALAAAPS---HNRVFSTG 240 (744)
Q Consensus 183 v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~----~~h~~~v~~l~~~~~---~~~l~~~~ 240 (744)
-++|+|.|||.++.+...|.|++++ ..+.. +..+ .........++++|+ ..+|++..
T Consensus 4 P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~ 70 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYY 70 (331)
T ss_dssp EEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEE
T ss_pred ceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEE
Confidence 4789999999777788899999999 33443 2222 123456799999994 34555443
No 402
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.16 E-value=1.6 Score=43.53 Aligned_cols=175 Identities=15% Similarity=0.142 Sum_probs=98.8
Q ss_pred CCeEEEEEc-CCCCEEEEEcCCc------eEEEEeecCCCCCceEE-eeeccCCccc--------ccccEEEEeeCCCEE
Q 004581 419 RKIICSTIS-NSGMLFAYSDHVK------PSLFELKKGKVGQGEWI-INKRQLPRKL--------QFAHSMIFSYDSSQL 482 (744)
Q Consensus 419 ~~i~~~~~s-~~g~~la~~~~~~------v~l~~~~~~~~~~~~~~-~~~~~~~~~~--------~~v~~i~~spd~~~l 482 (744)
..+..+.+. .++.++++++++. +..+.+........-.. .....+.... -..-+|++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 557788888 5667888887777 55555544111111101 1111111111 144578887888888
Q ss_pred EEEeCC------CcEEEEEccCCceeeeeccCccccc----ccCCCCCCceEEEEECCCCCEEEEEeC-----CC--c--
Q 004581 483 IIAGHD------RRIYVVDVSSSELLHTFTPCREEHD----REIQPSEPPITKMFTSSDGQWLAAVNC-----FG--D-- 543 (744)
Q Consensus 483 ~~~~~d------g~i~v~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~l~~spdg~~las~~~-----dg--~-- 543 (744)
++.-.+ ..|+.++.. |+.+..+..+..... ......+...-+|+++|||+.|.++.. |+ .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 877667 788888876 777666633211100 022335677899999999996666533 22 1
Q ss_pred -----EEEE--ECCC-c--ceEEEEecC------CCCceeEEeecCCCCCeEEEEe-----cCCeEEEEEcCC
Q 004581 544 -----VYIF--NLEI-Q--RQHWFISRL------EGASVTAAGFPPQNNNVLIITT-----SSNQVYVFDVEA 595 (744)
Q Consensus 544 -----i~iw--d~~~-~--~~~~~~~~~------~~~~v~~l~~sp~~~~~l~~~~-----~d~~v~vwd~~~ 595 (744)
++|+ |..+ + .....++.. ....|..+.+-+ ++++|+.-= ....++||.+.-
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~-d~~lLvLER~~~~~~~~~~ri~~v~l 250 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALP-DGRLLVLERDFSPGTGNYKRIYRVDL 250 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEEC-CCcEEEEEccCCCCccceEEEEEEEc
Confidence 4554 4443 2 122223222 235789999999 888666532 234666666553
No 403
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.88 E-value=2.4 Score=43.13 Aligned_cols=92 Identities=10% Similarity=0.074 Sum_probs=57.2
Q ss_pred cccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccc----cCCCC--CCceEEEEECCC-CCE-EEEEeC
Q 004581 469 FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDR----EIQPS--EPPITKMFTSSD-GQW-LAAVNC 540 (744)
Q Consensus 469 ~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~----~~~~~--~~~i~~l~~spd-g~~-las~~~ 540 (744)
.+.+++.+|++++.|+.+.=|.|.++|+.++..++.+++.+...-. ....+ ...-....-.+. ..+ ++-+-.
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 5778899999999888887899999999999999999885431100 00000 000000000000 112 334557
Q ss_pred CCcEEEEECCCcceEEEEec
Q 004581 541 FGDVYIFNLEIQRQHWFISR 560 (744)
Q Consensus 541 dg~i~iwd~~~~~~~~~~~~ 560 (744)
-|.|.||.+..+..+..+..
T Consensus 389 Rg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 389 RGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred CCeEEEEecCCCCEEEEEEe
Confidence 88999999998877665543
No 404
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.83 E-value=3.9 Score=45.20 Aligned_cols=82 Identities=16% Similarity=0.165 Sum_probs=55.8
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCceEEEEeecC---C----CCCceEEeee-----ccCC-cccccccEEEEeeC---CCE
Q 004581 418 SRKIICSTISNSGMLFAYSDHVKPSLFELKKG---K----VGQGEWIINK-----RQLP-RKLQFAHSMIFSYD---SSQ 481 (744)
Q Consensus 418 ~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~---~----~~~~~~~~~~-----~~~~-~~~~~v~~i~~spd---~~~ 481 (744)
...|..+.++|+|++||..+...|.|..+... . ++...-.... ..+. .....|..+.|+|. +..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 36788999999999999977778877777531 0 1111111111 1111 12237889999986 589
Q ss_pred EEEEeCCCcEEEEEccCC
Q 004581 482 LIIAGHDRRIYVVDVSSS 499 (744)
Q Consensus 482 l~~~~~dg~i~v~d~~~~ 499 (744)
|++-..|+++++||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 999999999999999643
No 405
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.83 E-value=0.31 Score=50.09 Aligned_cols=130 Identities=12% Similarity=0.163 Sum_probs=81.4
Q ss_pred CCcccccccEEEEeeC----CCEEEEEeCCCcEEEEEcc-----CCceeeeeccCcccccccCCCCCCceEEEEECCCCC
Q 004581 463 LPRKLQFAHSMIFSYD----SSQLIIAGHDRRIYVVDVS-----SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ 533 (744)
Q Consensus 463 ~~~~~~~v~~i~~spd----~~~l~~~~~dg~i~v~d~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~ 533 (744)
..+.+..|..+.|.|- ...|.+.-....|.||.+. .++.+..-...-. ....---..+.|+|...
T Consensus 52 viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~------e~~pvLpQGCVWHPk~~ 125 (671)
T PF15390_consen 52 VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIR------EPFPVLPQGCVWHPKKA 125 (671)
T ss_pred EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeecc------CCcccCCCcccccCCCc
Confidence 4455668999999884 3345555667789999984 2233322211000 00111124578999999
Q ss_pred EEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCC-eEEEEEcCCCccc
Q 004581 534 WLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSN-QVYVFDVEAKQLG 599 (744)
Q Consensus 534 ~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~-~v~vwd~~~~~~~ 599 (744)
.|++-.....-.++++.....+....-...+.|.+.+|.+ ||+.|+++-... .-++||-..+.+.
T Consensus 126 iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~-DG~RLVVAvGSsLHSyiWd~~qKtL~ 191 (671)
T PF15390_consen 126 ILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTK-DGQRLVVAVGSSLHSYIWDSAQKTLH 191 (671)
T ss_pred eEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecC-cCCEEEEEeCCeEEEEEecCchhhhh
Confidence 8887766665556676544433333222346899999999 998888875544 7889997766553
No 406
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.78 E-value=0.51 Score=48.10 Aligned_cols=141 Identities=10% Similarity=0.139 Sum_probs=79.1
Q ss_pred cccEEEEeeCCCEEEEEe-----------CCC-cEEEEEcc--CCce--eeeeccCcccccccCCCCCCceEEEEECCCC
Q 004581 469 FAHSMIFSYDSSQLIIAG-----------HDR-RIYVVDVS--SSEL--LHTFTPCREEHDREIQPSEPPITKMFTSSDG 532 (744)
Q Consensus 469 ~v~~i~~spd~~~l~~~~-----------~dg-~i~v~d~~--~~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg 532 (744)
....|+|.++|+.+++-. ..+ .|.+++-. +|+. ...|.. .....+.+++.++|
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-----------~l~~p~Gi~~~~~G 83 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-----------ELSMVTGLAVAVGG 83 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-----------CCCCccceeEecCC
Confidence 678899999999887753 223 67777654 2332 233332 23456889999998
Q ss_pred CEEEEEeCCCcEEEE-ECCCc-----ceEEEEecCC------CCceeEEeecCCCCCeEEEEecC---------------
Q 004581 533 QWLAAVNCFGDVYIF-NLEIQ-----RQHWFISRLE------GASVTAAGFPPQNNNVLIITTSS--------------- 585 (744)
Q Consensus 533 ~~las~~~dg~i~iw-d~~~~-----~~~~~~~~~~------~~~v~~l~~sp~~~~~l~~~~~d--------------- 585 (744)
+++ ++... |..| +.+.. +....+.... ...+..++|.| ||.+.++.+..
T Consensus 84 -lyV-~~~~~-i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~ 159 (367)
T TIGR02604 84 -VYV-ATPPD-ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESR 159 (367)
T ss_pred -EEE-eCCCe-EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcc
Confidence 444 44443 4444 54321 2222222211 13477899999 88766655521
Q ss_pred ----CeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCCCCCcEEEEEcC
Q 004581 586 ----NQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSA 639 (744)
Q Consensus 586 ----~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~ 639 (744)
+.|.-++.+++++. .+...-.-..+++|+|+|+ +|+.+.
T Consensus 160 ~~~~g~i~r~~pdg~~~e------------~~a~G~rnp~Gl~~d~~G~---l~~tdn 202 (367)
T TIGR02604 160 QGLGGGLFRYNPDGGKLR------------VVAHGFQNPYGHSVDSWGD---VFFCDN 202 (367)
T ss_pred cccCceEEEEecCCCeEE------------EEecCcCCCccceECCCCC---EEEEcc
Confidence 34555555555431 1221223457899999864 555544
No 407
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=95.77 E-value=0.64 Score=49.39 Aligned_cols=117 Identities=11% Similarity=0.145 Sum_probs=73.1
Q ss_pred CCCceEEEEECCCCCEEEEEeCCC-----cEEEEECCCcceEEE-EecCCCCceeEEeecCCCCCeEEEEecCCeEEEEE
Q 004581 519 SEPPITKMFTSSDGQWLAAVNCFG-----DVYIFNLEIQRQHWF-ISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFD 592 (744)
Q Consensus 519 ~~~~i~~l~~spdg~~las~~~dg-----~i~iwd~~~~~~~~~-~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd 592 (744)
..+.-..+.|-|.|..+|+-..|| .|.++.-++.++-.. +.......+..++|+- ....|+++ ..+.|++|-
T Consensus 245 ~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~-~s~vlav~-~~n~~~lwt 322 (1243)
T COG5290 245 VTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNL-LSTVLAVA-EGNLLKLWT 322 (1243)
T ss_pred cccchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhH-HHHHHHHh-hcceEEEEE
Confidence 344455689999999999987665 466666554332111 1111223556677876 55555554 356799997
Q ss_pred cCCCccccccccccCCcccccccCCCceEEEEeCCCCCCcEEEEEcCceEEEEeCCC
Q 004581 593 VEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGR 649 (744)
Q Consensus 593 ~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~~~~~~~~~ 649 (744)
..+-. |.-..... -..+.-+.|.|. +.+.+++.+..-|-.+++..
T Consensus 323 tkNyh---WYLK~e~~--------ip~~s~vkwhpe-~~nTl~f~d~~~I~~V~f~~ 367 (1243)
T COG5290 323 TKNYH---WYLKVERQ--------IPGISYVKWHPE-EKNTLLFRDGERILRVFFSE 367 (1243)
T ss_pred ccceE---EEEEEeec--------CCCcceeeeccc-cCcEEEEecCCeEEEEEeeh
Confidence 66542 33221111 135677899997 66778888999988888754
No 408
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.70 E-value=1.5 Score=47.44 Aligned_cols=106 Identities=12% Similarity=0.141 Sum_probs=62.7
Q ss_pred eCCCEEEEEeCCC------cEEEEEccCCce--eeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCC-----c
Q 004581 477 YDSSQLIIAGHDR------RIYVVDVSSSEL--LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG-----D 543 (744)
Q Consensus 477 pd~~~l~~~~~dg------~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg-----~ 543 (744)
-+|+..++|+.++ ++..||..+++- +..+... ..... .-.-++...+.|+.|+ +
T Consensus 426 ~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~-----------R~~~g--~a~~~~~iYvvGG~~~~~~~~~ 492 (571)
T KOG4441|consen 426 LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR-----------RSGFG--VAVLNGKIYVVGGFDGTSALSS 492 (571)
T ss_pred ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccc-----------cccce--EEEECCEEEEECCccCCCccce
Confidence 4788888888654 567888765543 2222221 11111 2223777888888776 3
Q ss_pred EEEEECCCcceEEEEecCCC-CceeEEeecCCCCCeEEEEecCC-----eEEEEEcCCCcc
Q 004581 544 VYIFNLEIQRQHWFISRLEG-ASVTAAGFPPQNNNVLIITTSSN-----QVYVFDVEAKQL 598 (744)
Q Consensus 544 i~iwd~~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~l~~~~~d~-----~v~vwd~~~~~~ 598 (744)
|..||..+.+-...-+.... ..+....+ ++...++|+.|| +|..||..+.+.
T Consensus 493 VE~ydp~~~~W~~v~~m~~~rs~~g~~~~---~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 493 VERYDPETNQWTMVAPMTSPRSAVGVVVL---GGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred EEEEcCCCCceeEcccCccccccccEEEE---CCEEEEEecccCccccceeEEcCCCCCce
Confidence 77888887764333211111 22222333 677888888876 788888888864
No 409
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.67 E-value=3.2 Score=43.05 Aligned_cols=122 Identities=8% Similarity=0.037 Sum_probs=70.0
Q ss_pred CccCcEEEEEEecCC----CEEEEEeCCCeEEEEEcc-----CCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEE
Q 004581 128 RVSGRVLSVTWSADG----NMLYSGSSDGYIRSWDAK-----LGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSA 197 (744)
Q Consensus 128 ~h~~~V~~~~~s~dg----~~l~t~~~dg~i~vwd~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~ 197 (744)
|+-..|..++|.|-+ ..|+..-....|.||.+. +++.+..-..+.+. ...---..+.|+|.. .|+.-
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e---~~pvLpQGCVWHPk~~iL~VL 130 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIRE---PFPVLPQGCVWHPKKAILTVL 130 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccC---CcccCCCcccccCCCceEEEE
Confidence 556679999999853 345555667799999874 23333222221111 111112345678887 33333
Q ss_pred cCCCCEEEEeCCC--cceEEEeeccccceeEEEEcCCCCEEEee-cCCCeEEEEEcccC
Q 004581 198 DSTGSVQFWDSRH--GTLLQAHSFHKGDVNALAAAPSHNRVFST-GSDGQVILYKASCE 253 (744)
Q Consensus 198 ~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~~l~~~-~~dg~i~iw~~~~~ 253 (744)
.....-.+.++.. .+....++ ..+-|.|.+|.+||++|+++ +..=.-++||-...
T Consensus 131 T~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 131 TARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred ecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 3333333445443 23333444 36789999999999988876 33345677876543
No 410
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.67 E-value=1.9 Score=40.37 Aligned_cols=157 Identities=13% Similarity=-0.021 Sum_probs=92.1
Q ss_pred CceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcce---EEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcC
Q 004581 179 PELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTL---LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESI 255 (744)
Q Consensus 179 ~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 255 (744)
....+..+.++.+ +...+..+.-++|.|+.+... +..+.. .+--.++.. .|++..++..|.-+.+.|+.....
T Consensus 85 ~~~l~~Dv~vse~-yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~v--sGn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 85 ARDLFADVRVSEE-YVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhhhheeEeccc-EEEEEcCCCceEEEeccCCCCcceeccccC-CceEEEEEe--cCCEEEEeeccCcEEEEECCCCCC
Confidence 4455666777654 566667778899999987432 223322 133344444 488999998777788999887552
Q ss_pred CCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCC
Q 004581 256 GPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT 335 (744)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~ 335 (744)
. ...........+...++++ +++-..+..|+
T Consensus 161 P--------------~lagrya~~~~d~~~v~IS-----------------------------------Gn~AYvA~~d~ 191 (370)
T COG5276 161 P--------------QLAGRYALPGGDTHDVAIS-----------------------------------GNYAYVAWRDG 191 (370)
T ss_pred c--------------eeeeeeccCCCCceeEEEe-----------------------------------cCeEEEEEeCC
Confidence 1 1122222233333444442 23566667788
Q ss_pred eEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccC
Q 004581 336 KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLEN 393 (744)
Q Consensus 336 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~ 393 (744)
-+.+-|+.......... .......+.++..+++..+++..+..+.+-+.....
T Consensus 192 GL~ivDVSnp~sPvli~-----~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~s 244 (370)
T COG5276 192 GLTIVDVSNPHSPVLIG-----SYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGPS 244 (370)
T ss_pred CeEEEEccCCCCCeEEE-----EEecCCceEEEEecCCeeEEEEcccceEEEecCCCC
Confidence 88888887643221110 000112566778888888888887777666655443
No 411
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.55 Score=41.33 Aligned_cols=188 Identities=10% Similarity=0.059 Sum_probs=115.4
Q ss_pred CCCEEEE-E--cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEE-EEeCCCcEEEEEccCCceeee
Q 004581 429 SGMLFAY-S--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLI-IAGHDRRIYVVDVSSSELLHT 504 (744)
Q Consensus 429 ~g~~la~-~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~-~~~~dg~i~v~d~~~~~~~~~ 504 (744)
+|.++.+ | ....|++|++.. +..+|..+ +.. ..+-.=-...-+.++. ..-.+|.-.++|..+.+.+..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~---gq~~~s~~---l~~--~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~ 126 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTT---GQEIFSEK---LAP--DTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGR 126 (262)
T ss_pred CCEEEEeccccccceeEEEeccC---ceEEEEee---cCC--ccccccceeeccceEEEEEeccceeEEEChHHhhhhcc
Confidence 3444444 4 556788888875 44443322 221 0110000112233333 334588889999998888887
Q ss_pred eccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEE----EecCCCCceeEEeecCCCCCeEE
Q 004581 505 FTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWF----ISRLEGASVTAAGFPPQNNNVLI 580 (744)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~----~~~~~~~~v~~l~~sp~~~~~l~ 580 (744)
+. ..+.=..++. |++-|..++....++.-|.++...... ..+..-..++-+.|- +|...|
T Consensus 127 ~~------------y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyA 190 (262)
T COG3823 127 FS------------YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYA 190 (262)
T ss_pred cc------------cCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEE
Confidence 77 3566666664 666688877777788777765543322 222112345667787 688888
Q ss_pred EEecCCeEEEEEcCCCccccccccccCCcc-cccccCCCceEEEEeCCCCCCcEEEEEcCceE
Q 004581 581 ITTSSNQVYVFDVEAKQLGEWSMQHTFVLP-RRYQEFPGEVIGLSFSPSPSSSSVIIYSARAM 642 (744)
Q Consensus 581 ~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~-~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~~ 642 (744)
=.=.+..|..-+.++|+...|-.-...... ..-..+..-..+|++.|+ .+++++.+-.|=
T Consensus 191 NVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~--~~r~~iTGK~wp 251 (262)
T COG3823 191 NVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQ--QDRFLITGKLWP 251 (262)
T ss_pred eeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCc--CCeEEEecCcCc
Confidence 777788888889999998888765443221 112233467789999997 578988888773
No 412
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.44 E-value=2.8 Score=40.78 Aligned_cols=157 Identities=18% Similarity=0.099 Sum_probs=83.5
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEE
Q 004581 415 SKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVV 494 (744)
Q Consensus 415 ~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~ 494 (744)
......+..+..++||++++++..+.+.+-- +.+...|....... ...+.+|.|+||+...+++ ..|.|+.=
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~----~~G~~~w~~~~r~~---~~riq~~gf~~~~~lw~~~-~Gg~~~~s 212 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSW----DPGQTTWQPHNRNS---SRRIQSMGFSPDGNLWMLA-RGGQIQFS 212 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-----TT-SS-EEEE--S---SS-EEEEEE-TTS-EEEEE-TTTEEEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEe----cCCCccceEEccCc---cceehhceecCCCCEEEEe-CCcEEEEc
Confidence 3344678888899999999999888765221 23555566555432 2389999999998877755 78888887
Q ss_pred Ec-cCCceeee-eccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCC--CCceeEEe
Q 004581 495 DV-SSSELLHT-FTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLE--GASVTAAG 570 (744)
Q Consensus 495 d~-~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~l~ 570 (744)
+. ...+.-.. +.+ ...-.-.+..++|.+++...|+|+ .| ..+...+.++.-...+... ......+.
T Consensus 213 ~~~~~~~~w~~~~~~--------~~~~~~~~ld~a~~~~~~~wa~gg-~G-~l~~S~DgGktW~~~~~~~~~~~n~~~i~ 282 (302)
T PF14870_consen 213 DDPDDGETWSEPIIP--------IKTNGYGILDLAYRPPNEIWAVGG-SG-TLLVSTDGGKTWQKDRVGENVPSNLYRIV 282 (302)
T ss_dssp E-TTEEEEE---B-T--------TSS--S-EEEEEESSSS-EEEEES-TT--EEEESSTTSS-EE-GGGTTSSS---EEE
T ss_pred cCCCCccccccccCC--------cccCceeeEEEEecCCCCEEEEeC-Cc-cEEEeCCCCccceECccccCCCCceEEEE
Confidence 72 12211111 010 000234488999999988888765 44 3456677776544443322 24678899
Q ss_pred ecCCCCCeEEEEecCCeEEEE
Q 004581 571 FPPQNNNVLIITTSSNQVYVF 591 (744)
Q Consensus 571 ~sp~~~~~l~~~~~d~~v~vw 591 (744)
|.+ + +.-++.+.+|.|.-|
T Consensus 283 f~~-~-~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 283 FVN-P-DKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEE-T-TEEEEE-STTEEEEE
T ss_pred EcC-C-CceEEECCCcEEEEe
Confidence 986 4 556666778877655
No 413
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.40 E-value=2.7 Score=42.24 Aligned_cols=214 Identities=12% Similarity=0.139 Sum_probs=99.3
Q ss_pred CCCEEEE-E-cCCceEEEEeecCCCCCceEEeeec-cCCc--ccccccEEEEeeCCCEEEEE--eCC----CcEEEEEcc
Q 004581 429 SGMLFAY-S-DHVKPSLFELKKGKVGQGEWIINKR-QLPR--KLQFAHSMIFSYDSSQLIIA--GHD----RRIYVVDVS 497 (744)
Q Consensus 429 ~g~~la~-~-~~~~v~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~v~~i~~spd~~~l~~~--~~d----g~i~v~d~~ 497 (744)
+.++|++ + ..+.|+++++.+.....++..+-.. ++.. .......+.--|+|+.++++ +.+ |.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 3467777 5 7788999998863333343222111 1111 11233444445799888876 222 468888888
Q ss_pred CCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeC--------------------CCcEEEEECCCcceEEE
Q 004581 498 SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC--------------------FGDVYIFNLEIQRQHWF 557 (744)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~--------------------dg~i~iwd~~~~~~~~~ 557 (744)
+.+.+...+.... ...--..+.|.|..+.+++... -.++.+||+.+.+.+.+
T Consensus 166 tf~v~g~We~~~~--------~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~ 237 (461)
T PF05694_consen 166 TFEVKGRWEKDRG--------PQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQT 237 (461)
T ss_dssp T--EEEE--SB-T--------T------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEE
T ss_pred cccccceeccCCC--------CCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeE
Confidence 8888777765221 2333456777888888877643 34799999999999888
Q ss_pred EecCCC-CceeEEeecCC-CCCeEEEEec-CCeEEEEEc-CCCccccccccccCCccc-------------ccccCCCce
Q 004581 558 ISRLEG-ASVTAAGFPPQ-NNNVLIITTS-SNQVYVFDV-EAKQLGEWSMQHTFVLPR-------------RYQEFPGEV 620 (744)
Q Consensus 558 ~~~~~~-~~v~~l~~sp~-~~~~l~~~~~-d~~v~vwd~-~~~~~~~ws~~~~~~~~~-------------~~~~~~~~v 620 (744)
+..... ..+..+.|..+ +..+=++++. ..+|..|-- +.+ .|..+....++. .+...+.-|
T Consensus 238 idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g---~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Li 314 (461)
T PF05694_consen 238 IDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDG---EWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLI 314 (461)
T ss_dssp EES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETT---EEEEEEEEEE--EE--SS---GGGGGG-EE----
T ss_pred EecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCC---CeeeeEEEECCCcccCcccccccccccccCCCce
Confidence 865443 34666666540 3344333333 334444433 444 366665443332 222225668
Q ss_pred EEEEeCCCCCCcEEEE--EcCceEEEEeCCCCCCCCc
Q 004581 621 IGLSFSPSPSSSSVII--YSARAMCVIDFGRPVDPDD 655 (744)
Q Consensus 621 ~~i~fspdg~~~~~~~--~~~~~~~~~~~~~~~~~~~ 655 (744)
++|..|.|.+ .+++ |....+..+|++.|...+.
T Consensus 315 tDI~iSlDDr--fLYvs~W~~GdvrqYDISDP~~Pkl 349 (461)
T PF05694_consen 315 TDILISLDDR--FLYVSNWLHGDVRQYDISDPFNPKL 349 (461)
T ss_dssp --EEE-TTS---EEEEEETTTTEEEEEE-SSTTS-EE
T ss_pred EeEEEccCCC--EEEEEcccCCcEEEEecCCCCCCcE
Confidence 9999999833 3333 4566788999988765443
No 414
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.36 E-value=0.79 Score=46.72 Aligned_cols=153 Identities=11% Similarity=0.103 Sum_probs=81.9
Q ss_pred CCeEEEEEcCCCCEEEEEc------------C-CceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEE
Q 004581 419 RKIICSTISNSGMLFAYSD------------H-VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA 485 (744)
Q Consensus 419 ~~i~~~~~s~~g~~la~~~------------~-~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~ 485 (744)
.....++|.++|+++++.. . +.|.+++-..+++....+ ..+.......+.+++.++| |.++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~----~vfa~~l~~p~Gi~~~~~G--lyV~ 87 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKS----NVFAEELSMVTGLAVAVGG--VYVA 87 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCccee----EEeecCCCCccceeEecCC--EEEe
Confidence 5677899999999887742 1 245555443322222111 1222223467889999988 4444
Q ss_pred eCCCcEEEE-EccC-C----ceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeC-------------------
Q 004581 486 GHDRRIYVV-DVSS-S----ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC------------------- 540 (744)
Q Consensus 486 ~~dg~i~v~-d~~~-~----~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~------------------- 540 (744)
... .|..| |... + +....+.+... ....+......++|.|||.+.++.+.
T Consensus 88 ~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~----~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~ 162 (367)
T TIGR02604 88 TPP-DILFLRDKDGDDKADGEREVLLSGFGG----QINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGL 162 (367)
T ss_pred CCC-eEEEEeCCCCCCCCCCccEEEEEccCC----CCCcccccccCceECCCCCEEEecccCCCceeccCCCccCccccc
Confidence 444 35444 4421 1 11111111000 00002345778999999987665442
Q ss_pred CCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecC
Q 004581 541 FGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSS 585 (744)
Q Consensus 541 dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d 585 (744)
.|.|.-++.++.+..... ... ..+..++|+| +++++++-..+
T Consensus 163 ~g~i~r~~pdg~~~e~~a-~G~-rnp~Gl~~d~-~G~l~~tdn~~ 204 (367)
T TIGR02604 163 GGGLFRYNPDGGKLRVVA-HGF-QNPYGHSVDS-WGDVFFCDNDD 204 (367)
T ss_pred CceEEEEecCCCeEEEEe-cCc-CCCccceECC-CCCEEEEccCC
Confidence 145666666665543222 222 3567899999 88877664433
No 415
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.23 E-value=0.6 Score=49.83 Aligned_cols=124 Identities=8% Similarity=0.043 Sum_probs=79.7
Q ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecC-CCCCeEEEEecCCeEEEEEcCCCcc
Q 004581 520 EPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPP-QNNNVLIITTSSNQVYVFDVEAKQL 598 (744)
Q Consensus 520 ~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp-~~~~~l~~~~~d~~v~vwd~~~~~~ 598 (744)
....+-+.-|.-++..++-+....+.|||...+.......-.....|.++.|.. .+++.+++.+-.+.|.+|.-....+
T Consensus 29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 334555666665555444444557999999988755443322346899999863 2788888888899999986542222
Q ss_pred ----ccccccccCCcccccccCC-CceEEEEeCCCCCCcEEEEEcCceEEEEeCCCC
Q 004581 599 ----GEWSMQHTFVLPRRYQEFP-GEVIGLSFSPSPSSSSVIIYSARAMCVIDFGRP 650 (744)
Q Consensus 599 ----~~ws~~~~~~~~~~~~~~~-~~v~~i~fspdg~~~~~~~~~~~~~~~~~~~~~ 650 (744)
..|..-.... +..+. .+|.+..|-+||. +++..++.++++|...+
T Consensus 109 ~~~~p~w~~i~~i~----i~~~T~h~Igds~Wl~~G~---LvV~sGNqlfv~dk~~~ 158 (631)
T PF12234_consen 109 TNKGPSWAPIRKID----ISSHTPHPIGDSIWLKDGT---LVVGSGNQLFVFDKWLD 158 (631)
T ss_pred hcCCcccceeEEEE----eecCCCCCccceeEecCCe---EEEEeCCEEEEECCCcC
Confidence 1222111111 12222 5789999999875 77788888988886544
No 416
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=95.16 E-value=5.5 Score=42.76 Aligned_cols=164 Identities=16% Similarity=0.158 Sum_probs=86.2
Q ss_pred cccEEEEeeCCCEEEEEeCCCcEEEEEccCCcee--eeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeC-CC---
Q 004581 469 FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELL--HTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC-FG--- 542 (744)
Q Consensus 469 ~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~-dg--- 542 (744)
.+..+.|.++++.+++...+|.|.+||...+... ..+..... ....+..-|.....-....++.+.+. ++
T Consensus 131 kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~----~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~ 206 (670)
T PF10395_consen 131 KVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSS----INVSYSKFVNDFELENGKDLLLTVSQLSNSKL 206 (670)
T ss_pred ceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccc----cceehhhhhcccccccCCceEEEEEEcCCCcE
Confidence 7888999999999999999999999999433221 12221100 00001111222221122335555444 32
Q ss_pred cEEEEEC--CCcceEEEEe--cCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCcccccccCCC
Q 004581 543 DVYIFNL--EIQRQHWFIS--RLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPG 618 (744)
Q Consensus 543 ~i~iwd~--~~~~~~~~~~--~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~ 618 (744)
..+++.+ ++. ....+. ..+........|+-++|.+.-. .+++|.+|++..-++. .+..++.-+....
T Consensus 207 ~ykL~~l~~~~~-~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~-----~tI~l~~ii~~~~- 277 (670)
T PF10395_consen 207 SYKLISLSNESS-SIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQ-----KTISLPSIIDKES- 277 (670)
T ss_pred EEEEEEeccCCc-ceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEE-----EEEEechhhcccc-
Confidence 4667777 222 222221 1111233334444434554333 6778888888655432 1222332222211
Q ss_pred ceEEEEeCCCCCCcEEEEEcCceEEEEeC
Q 004581 619 EVIGLSFSPSPSSSSVIIYSARAMCVIDF 647 (744)
Q Consensus 619 ~v~~i~fspdg~~~~~~~~~~~~~~~~~~ 647 (744)
-.-+.|.|= .++|+++...+.++.+|+
T Consensus 278 -~~~vSl~~~-s~nRvLLs~~nkIyLld~ 304 (670)
T PF10395_consen 278 -DDLVSLKPP-SPNRVLLSVNNKIYLLDL 304 (670)
T ss_pred -ccceEeecC-CCCeEEEEcCCEEEEEee
Confidence 233444442 468999999999999998
No 417
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.14 E-value=0.52 Score=46.64 Aligned_cols=159 Identities=11% Similarity=0.057 Sum_probs=96.2
Q ss_pred EEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCce-
Q 004581 423 CSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSEL- 501 (744)
Q Consensus 423 ~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~- 501 (744)
.+-|....+.+.+...+.+.-|........+.+ .-.....++|.++.||+|.+.||+--.+.+|.+++....+.
T Consensus 27 gvFfDDaNkqlfavrSggatgvvvkgpndDVpi-----Sfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~ 101 (657)
T KOG2377|consen 27 GVFFDDANKQLFAVRSGGATGVVVKGPNDDVPI-----SFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ 101 (657)
T ss_pred ceeeccCcceEEEEecCCeeEEEEeCCCCCCCc-----eeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchh
Confidence 344555555555555555555665543322221 11112233899999999999999999999999999853322
Q ss_pred -eeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEE
Q 004581 502 -LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLI 580 (744)
Q Consensus 502 -~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~ 580 (744)
..+.+.. ..+..|...+|+.+ .-+|..+..| +.+|-....+....+...+...|.-..|++ +.+.++
T Consensus 102 l~~~~~ck---------~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~-et~v~L 169 (657)
T KOG2377|consen 102 LEYTQECK---------TKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCP-ETAVIL 169 (657)
T ss_pred hHHHHHhc---------cCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEcc-ccceEe
Confidence 2222211 03456899999877 5677776666 788877655433333333556888899999 666544
Q ss_pred EEec--CCeEEEEEcCCCcc
Q 004581 581 ITTS--SNQVYVFDVEAKQL 598 (744)
Q Consensus 581 ~~~~--d~~v~vwd~~~~~~ 598 (744)
.++. .+++.=+-+.++..
T Consensus 170 L~t~~~~n~lnpf~~~~~~v 189 (657)
T KOG2377|consen 170 LSTTVLENVLNPFHFRAGTM 189 (657)
T ss_pred eeccccccccccEEEeecee
Confidence 4433 34454455555543
No 418
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=95.11 E-value=4.8 Score=41.62 Aligned_cols=114 Identities=18% Similarity=0.092 Sum_probs=67.5
Q ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECCC-cceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccc
Q 004581 521 PPITKMFTSSDGQWLAAVNCFGDVYIFNLEI-QRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLG 599 (744)
Q Consensus 521 ~~i~~l~~spdg~~las~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~ 599 (744)
..|+.+++..+|+.-+..-.+| +..|+.++ +.......+...++|.++.=.| +++ |..++.+|-++. +.+.++..
T Consensus 376 ~nit~~~~d~~g~lWlgs~q~G-Lsrl~n~n~~avlde~agl~ss~V~aived~-dns-LWIGTs~Glvk~-~pe~~~v~ 451 (671)
T COG3292 376 MNITTTLEDSRGRLWLGSMQNG-LSRLDNKNEWAVLDEDAGLPSSEVSAIVEDP-DNS-LWIGTSGGLVKR-DPESGRVL 451 (671)
T ss_pred cccchhhhccCCcEEEEecccc-hhhhccCCcccccccccCCcccceeeeeecC-CCC-EEEeccCCeEec-Cccccchh
Confidence 5577777877666444433445 66677766 3333344444557888888888 766 889999986553 44444321
Q ss_pred cccccccCCcccccccCCCceEEEEeCCCCCCcEEEEEcCceEEEEeC
Q 004581 600 EWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDF 647 (744)
Q Consensus 600 ~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~~~~~~~ 647 (744)
. ... +.......+.+..+...|+|+ +|+..+..+...+-
T Consensus 452 n-----~ln-~~~~~l~~s~~~~lg~~~~g~---Lw~a~g~gva~~~s 490 (671)
T COG3292 452 N-----LLN-PGSHGLDGSRVEQLGLGPDGR---LWLAAGSGVAAWES 490 (671)
T ss_pred c-----ccc-cccCcCCcchhhhhccCCCCc---eEEEecceeeeecc
Confidence 1 000 111111124577888888865 88877777766553
No 419
>PHA03098 kelch-like protein; Provisional
Probab=95.10 E-value=0.97 Score=49.04 Aligned_cols=146 Identities=8% Similarity=0.010 Sum_probs=69.0
Q ss_pred ccCCeEEEEecC-----CeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCC------CeEEEEEccCCc
Q 004581 95 VEDRRVALACDD-----GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD------GYIRSWDAKLGY 163 (744)
Q Consensus 95 ~~~~~la~~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~d------g~i~vwd~~~~~ 163 (744)
.++...+.|+.+ ..+..||..++. ......+....... +++ .-+++..+.|+.+ ..+..||..+++
T Consensus 341 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 341 FNNRIYVIGGIYNSISLNTVESWKPGESK-WREEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred ECCEEEEEeCCCCCEecceEEEEcCCCCc-eeeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 445677777765 346777776432 21112222111111 122 2366777777632 358889987654
Q ss_pred eEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCC--------CCEEEEeCCCcceEEE--eeccccceeEEEEcCC
Q 004581 164 EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADST--------GSVQFWDSRHGTLLQA--HSFHKGDVNALAAAPS 232 (744)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~d--------g~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~ 232 (744)
-...-.. .. ... -.++... ++ .++.|+.+ ..+.+||..+++.... +.........+.+ +
T Consensus 418 W~~~~~~--p~---~r~--~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~ 487 (534)
T PHA03098 418 WSKGSPL--PI---SHY--GGCAIYH-DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--N 487 (534)
T ss_pred eeecCCC--Cc---ccc--CceEEEE-CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--C
Confidence 3221111 00 111 1122223 44 45555542 2388899887654322 1111111112222 5
Q ss_pred CCEEEeecCC-----CeEEEEEcccC
Q 004581 233 HNRVFSTGSD-----GQVILYKASCE 253 (744)
Q Consensus 233 ~~~l~~~~~d-----g~i~iw~~~~~ 253 (744)
+..++.||.+ ..+.+||..+.
T Consensus 488 ~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 488 NKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CEEEEEcCCcCCcccceeEEEeCCCC
Confidence 6666677654 46777877663
No 420
>PRK13684 Ycf48-like protein; Provisional
Probab=95.01 E-value=4.2 Score=40.69 Aligned_cols=115 Identities=16% Similarity=0.158 Sum_probs=69.1
Q ss_pred ccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeC
Q 004581 129 VSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDS 208 (744)
Q Consensus 129 h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~ 208 (744)
-...++++.+.++++.++.+ ..|.+++=....|..-.....+. ......+.++.+.+++.++.++.+|.+.. ..
T Consensus 213 ~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~----~~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~ 286 (334)
T PRK13684 213 SSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPE----ITNGYGYLDLAYRTPGEIWAGGGNGTLLV-SK 286 (334)
T ss_pred CcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCc----cccccceeeEEEcCCCCEEEEcCCCeEEE-eC
Confidence 45678999999999877665 46766532334444332222110 01234578889999887777777886653 44
Q ss_pred CCcceEEEee---ccccceeEEEEcCCCCEEEeecCCCeEEEEEc
Q 004581 209 RHGTLLQAHS---FHKGDVNALAAAPSHNRVFSTGSDGQVILYKA 250 (744)
Q Consensus 209 ~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~ 250 (744)
..|+.-+... .-......+.|..+++. +..+..|.|..|+-
T Consensus 287 d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~G~il~~~~ 330 (334)
T PRK13684 287 DGGKTWEKDPVGEEVPSNFYKIVFLDPEKG-FVLGQRGVLLRYVG 330 (334)
T ss_pred CCCCCCeECCcCCCCCcceEEEEEeCCCce-EEECCCceEEEecC
Confidence 4444433332 22345778888766655 55567898887764
No 421
>PHA02713 hypothetical protein; Provisional
Probab=94.84 E-value=0.92 Score=49.05 Aligned_cols=152 Identities=9% Similarity=0.047 Sum_probs=76.7
Q ss_pred ccccccCCeEEEEecCC-----eEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCC-------------
Q 004581 91 EQSVVEDRRVALACDDG-----CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDG------------- 152 (744)
Q Consensus 91 ~~~~~~~~~la~~~~dg-----~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg------------- 152 (744)
.....++...+.|+.++ .+..||..++. ......+.........++ -+|+..+.|+.++
T Consensus 346 ~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~-W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~ 422 (557)
T PHA02713 346 SLAVIDDTIYAIGGQNGTNVERTIECYTMGDDK-WKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSI 422 (557)
T ss_pred eEEEECCEEEEECCcCCCCCCceEEEEECCCCe-EEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccc
Confidence 34445556777787654 47888876432 221122222111122222 2677777777542
Q ss_pred ----------eEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCC------CCEEEEeCCC-cceE-
Q 004581 153 ----------YIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADST------GSVQFWDSRH-GTLL- 214 (744)
Q Consensus 153 ----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d------g~i~vwd~~~-~~~~- 214 (744)
.+..||.++.+-...- ++. ....-.+++...+...+.|+.+ ..+..||.++ .+..
T Consensus 423 ~~~~~~~~~~~ve~YDP~td~W~~v~--~m~-----~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~ 495 (557)
T PHA02713 423 DMEEDTHSSNKVIRYDTVNNIWETLP--NFW-----TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWEL 495 (557)
T ss_pred cccccccccceEEEECCCCCeEeecC--CCC-----cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeE
Confidence 4677877665422111 110 1111112233333345556543 2467899887 4433
Q ss_pred -EEeeccccceeEEEEcCCCCEEEeecCCC--eEEEEEcccCc
Q 004581 215 -QAHSFHKGDVNALAAAPSHNRVFSTGSDG--QVILYKASCES 254 (744)
Q Consensus 215 -~~~~~h~~~v~~l~~~~~~~~l~~~~~dg--~i~iw~~~~~~ 254 (744)
..+.........+++ ++...++||.|+ .+..||..+.+
T Consensus 496 ~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 496 ITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred ccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 333332233333333 577788888888 67777776644
No 422
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=94.61 E-value=7.8 Score=43.95 Aligned_cols=118 Identities=16% Similarity=0.197 Sum_probs=80.2
Q ss_pred CCceEEEEECC-CCCEEEEEeCCCcEEEEECCCc----ceEEEEecCCCCc----------eeEEeecCCCCCeEEEEec
Q 004581 520 EPPITKMFTSS-DGQWLAAVNCFGDVYIFNLEIQ----RQHWFISRLEGAS----------VTAAGFPPQNNNVLIITTS 584 (744)
Q Consensus 520 ~~~i~~l~~sp-dg~~las~~~dg~i~iwd~~~~----~~~~~~~~~~~~~----------v~~l~~sp~~~~~l~~~~~ 584 (744)
..+...++|+| +.+.||..+..|+..||++... ...+.+.....+. -..+.|.+ +.+.|++++.
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~r 223 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCNR 223 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEcC
Confidence 45677899998 5568999999999999999211 1111111111122 23788988 7777877764
Q ss_pred CCeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCCCCCcEEEEEcCceEEEEeCCC
Q 004581 585 SNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGR 649 (744)
Q Consensus 585 d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~~~~~~~~~ 649 (744)
..+.++|+++..... . -........|.++.=+|+ +.+.+++..+..+..++...
T Consensus 224 -~~l~~~d~~~~~~~~--------~-l~~~~~~~~IlDv~~~~~-~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 224 -SKLMLIDFESNWQTE--------Y-LVTAKTWSWILDVKRSPD-NPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred -CceEEEECCCCCccc--------h-hccCCChhheeeEEecCC-ccceEEEEecCeEEEEEccC
Confidence 458899999885322 0 112224478999999997 56777788888999999755
No 423
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.53 E-value=0.15 Score=32.07 Aligned_cols=33 Identities=18% Similarity=0.406 Sum_probs=27.6
Q ss_pred CceeEEeecCCCC--CeEEEEecCCeEEEEEcCCC
Q 004581 564 ASVTAAGFPPQNN--NVLIITTSSNQVYVFDVEAK 596 (744)
Q Consensus 564 ~~v~~l~~sp~~~--~~l~~~~~d~~v~vwd~~~~ 596 (744)
+.++++.|+|..+ ++|+.+-.-+.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3689999998445 68999988899999999864
No 424
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.50 E-value=2.3 Score=45.53 Aligned_cols=112 Identities=17% Similarity=0.155 Sum_probs=71.2
Q ss_pred cccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEE--CCCCCEEEEEeCCCcEEE
Q 004581 469 FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFT--SSDGQWLAAVNCFGDVYI 546 (744)
Q Consensus 469 ~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--spdg~~las~~~dg~i~i 546 (744)
.+.-+.-|.-++.-++-+....+.|||...+.+...-.- ...+.|..+.| .|||+.+.+.+....|.+
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f----------~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l 100 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF----------SEDDPIRDLDWTSTPDGQSILAVGFPHHVLL 100 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee----------cCCCceeeceeeecCCCCEEEEEEcCcEEEE
Confidence 455555555455544544456899999987764433221 04778999987 569999999899999999
Q ss_pred EECC-----Cc----ceEEE--EecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEc
Q 004581 547 FNLE-----IQ----RQHWF--ISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDV 593 (744)
Q Consensus 547 wd~~-----~~----~~~~~--~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~ 593 (744)
|.-. .. ..+.. +......+|.+..|.+ +|.+ ++|+ .+++.|+|-
T Consensus 101 ~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~L-vV~s-GNqlfv~dk 155 (631)
T PF12234_consen 101 YTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTL-VVGS-GNQLFVFDK 155 (631)
T ss_pred EEccchhhhcCCcccceeEEEEeecCCCCCccceeEec-CCeE-EEEe-CCEEEEECC
Confidence 8542 11 12222 2222225899999998 7654 4443 567888874
No 425
>PRK13684 Ycf48-like protein; Provisional
Probab=94.47 E-value=4.4 Score=40.59 Aligned_cols=107 Identities=18% Similarity=0.170 Sum_probs=64.0
Q ss_pred cCcEEEEEEecCCCEEEEEeCCCeEEE-EEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeC
Q 004581 130 SGRVLSVTWSADGNMLYSGSSDGYIRS-WDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDS 208 (744)
Q Consensus 130 ~~~V~~~~~s~dg~~l~t~~~dg~i~v-wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~ 208 (744)
.+.+.++.+.|++.+++++. .|.+.. ++ ..++.-..... .....+.++.+.+++.++..+..|.+++=..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~-------~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQR-------NSSRRLQSMGFQPDGNLWMLARGGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeC-------CCcccceeeeEcCCCCEEEEecCCEEEEccC
Confidence 56789999999987776654 454442 22 12232222221 4557889999999996555666787754333
Q ss_pred CCcceEEEeecc----ccceeEEEEcCCCCEEEeecCCCeEE
Q 004581 209 RHGTLLQAHSFH----KGDVNALAAAPSHNRVFSTGSDGQVI 246 (744)
Q Consensus 209 ~~~~~~~~~~~h----~~~v~~l~~~~~~~~l~~~~~dg~i~ 246 (744)
+.|..-.....+ ...+..+++.+++. ++.++.+|.+.
T Consensus 243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~ 283 (334)
T PRK13684 243 DDLESWSKPIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLL 283 (334)
T ss_pred CCCCccccccCCccccccceeeEEEcCCCC-EEEEcCCCeEE
Confidence 434332222211 23578899998776 45555677654
No 426
>PHA03098 kelch-like protein; Provisional
Probab=94.45 E-value=1.5 Score=47.62 Aligned_cols=113 Identities=9% Similarity=-0.063 Sum_probs=53.7
Q ss_pred cccccCCeEEEEecCC------eEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCC-----CeEEEEEcc
Q 004581 92 QSVVEDRRVALACDDG------CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD-----GYIRSWDAK 160 (744)
Q Consensus 92 ~~~~~~~~la~~~~dg------~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~d-----g~i~vwd~~ 160 (744)
....++..++.|+.++ .+..||..+..-. ....+.........+. -+++..+.||.+ ..+..||..
T Consensus 290 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~ 366 (534)
T PHA03098 290 SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPG 366 (534)
T ss_pred EEEECCEEEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCC
Confidence 3345556667776543 4677777644321 1122221112222222 267777777764 357788877
Q ss_pred CCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCC------CCEEEEeCCCcceE
Q 004581 161 LGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADST------GSVQFWDSRHGTLL 214 (744)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~ 214 (744)
+++-...- +.. ....-.+++...+..++.|+.+ ..+..||..+.+..
T Consensus 367 ~~~W~~~~--~lp-----~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 367 ESKWREEP--PLI-----FPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCceeeCC--CcC-----cCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 65432111 110 1111112222323355555532 45888998875543
No 427
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.42 E-value=1.3 Score=39.86 Aligned_cols=104 Identities=17% Similarity=0.242 Sum_probs=68.1
Q ss_pred CEEEEEeCCCcEEEEEcc--CCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCC------cEEEE---E
Q 004581 480 SQLIIAGHDRRIYVVDVS--SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG------DVYIF---N 548 (744)
Q Consensus 480 ~~l~~~~~dg~i~v~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg------~i~iw---d 548 (744)
..|..+.....|.+|++. ..+++.+|.. -+.|..+.++..|+||++--.+. .+++| +
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T------------v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST------------VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc------------hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhh
Confidence 555555667789999997 4567788885 68899999999999999974322 45654 2
Q ss_pred CC--Ccce---------------------EEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCc
Q 004581 549 LE--IQRQ---------------------HWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 597 (744)
Q Consensus 549 ~~--~~~~---------------------~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~ 597 (744)
.. .... ...+.-+-..++.+++..|..|+ |++|+ ++++.+|.+..+.
T Consensus 97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGC-GNKLVLFTLKYQT 166 (215)
T ss_pred hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEc-CCEEEEEEEEEEE
Confidence 21 1111 11111112347889999996666 45554 5678899887663
No 428
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.15 E-value=3 Score=44.56 Aligned_cols=148 Identities=11% Similarity=0.164 Sum_probs=74.2
Q ss_pred eEEEEecCCeEEEEEecCCCceeEe-ecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCC
Q 004581 99 RVALACDDGCVRIYRITDSDELIYH-RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS 177 (744)
Q Consensus 99 ~la~~~~dg~i~iwd~~~~~~~~~~-~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 177 (744)
.|.+...+|++++|++. ++..... .-+......|..+.|..+|-.+.+. +|++.+-+-.....+++++.-+..
T Consensus 96 eLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~--~g~v~~i~~~~~~~~~~~~diP~~--- 169 (829)
T KOG2280|consen 96 ELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVAVLTV--SGQVILINGVEEPKLRKMPDIPYN--- 169 (829)
T ss_pred eEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCceEEEec--CCcEEEEcCCCcchhhhCCCCCCc---
Confidence 78888999999999996 4433211 1123344557777776677555554 344444332222223333321110
Q ss_pred CCceeEEEEEEecCC--eEEE-Ec-CCCCEEEEeCCCc-ceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEccc
Q 004581 178 GPELCIWSLLSLRCG--TLVS-AD-STGSVQFWDSRHG-TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 252 (744)
Q Consensus 178 ~~~~~v~~~~~~~~~--~l~s-~~-~dg~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~ 252 (744)
......|.+ +.|.. .++. .. ..+ ..+...++. .....+......+..+.+||+.++|+-=..+|.|.+-+.+.
T Consensus 170 ~~~~~~Wt~-~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~ 247 (829)
T KOG2280|consen 170 ELPKSCWTV-FQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDL 247 (829)
T ss_pred cCCCcceeE-ecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecch
Confidence 111122222 11211 1111 11 111 011111111 11122222236788899999999999988999998887766
Q ss_pred Cc
Q 004581 253 ES 254 (744)
Q Consensus 253 ~~ 254 (744)
.+
T Consensus 248 ~~ 249 (829)
T KOG2280|consen 248 SQ 249 (829)
T ss_pred hh
Confidence 44
No 429
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.05 E-value=6 Score=42.44 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=33.7
Q ss_pred ccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeecc
Q 004581 468 QFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTP 507 (744)
Q Consensus 468 ~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 507 (744)
..+..+..||+.++|+.-...|.|.+-+.+..+....+..
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~ 256 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC 256 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence 3677889999999999999999999999887776666653
No 430
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.03 E-value=1.7 Score=35.65 Aligned_cols=109 Identities=13% Similarity=0.149 Sum_probs=70.6
Q ss_pred EEeeCCCEEEEEeCCCcEEEEEccCC--------ceeeeeccCcccccccCCCCCCceEEEEECC-----CCCEEEEEeC
Q 004581 474 IFSYDSSQLIIAGHDRRIYVVDVSSS--------ELLHTFTPCREEHDREIQPSEPPITKMFTSS-----DGQWLAAVNC 540 (744)
Q Consensus 474 ~~spd~~~l~~~~~dg~i~v~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-----dg~~las~~~ 540 (744)
.|.....-|++++..|+|.|++.... ..++.+. ....|++|+-.+ +...|+.|+.
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN------------in~~italaaG~l~~~~~~D~LliGt~ 72 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN------------INQEITALAAGRLKPDDGRDCLLIGTQ 72 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE------------CCCceEEEEEEecCCCCCcCEEEEecc
Confidence 45555567888899999999987532 2334444 366788886544 3456777754
Q ss_pred CCcEEEEECCCcceEEEEecCCCCceeEEeecC--CCCCeEEEEecCCeEEEEEcCCCc
Q 004581 541 FGDVYIFNLEIQRQHWFISRLEGASVTAAGFPP--QNNNVLIITTSSNQVYVFDVEAKQ 597 (744)
Q Consensus 541 dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp--~~~~~l~~~~~d~~v~vwd~~~~~ 597 (744)
..|..||++.......... + ..|.++.+-. +...-|+..+.+..|.-||.+..+
T Consensus 73 -t~llaYDV~~N~d~Fyke~-~-DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 73 -TSLLAYDVENNSDLFYKEV-P-DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred -ceEEEEEcccCchhhhhhC-c-cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 4699999988765432222 2 4677776632 123456777778888888887765
No 431
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.02 E-value=0.28 Score=30.84 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=26.4
Q ss_pred CcEEEEEEecCC---CEEEEEeCCCeEEEEEccCC
Q 004581 131 GRVLSVTWSADG---NMLYSGSSDGYIRSWDAKLG 162 (744)
Q Consensus 131 ~~V~~~~~s~dg---~~l~t~~~dg~i~vwd~~~~ 162 (744)
+.|.++.|||+. ++|+.+-..|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 478999999854 48888877899999999863
No 432
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.98 E-value=7.9 Score=39.58 Aligned_cols=183 Identities=18% Similarity=0.163 Sum_probs=97.2
Q ss_pred CCeeEEecCCCeEEEEEccCCceeEEeeccC-cceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCC
Q 004581 5 GGRLFSSSIDGSVSEWDLYDLKQKIVLQSID-FSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEND 83 (744)
Q Consensus 5 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~-~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (744)
+++|+.++.++.+...|..+|..+....... ..+..-++-.++
T Consensus 111 ~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~------------------------------------ 154 (370)
T COG1520 111 DGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDG------------------------------------ 154 (370)
T ss_pred CCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCc------------------------------------
Confidence 5668888888888888887888887776554 111122222222
Q ss_pred CCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeec-----ccCccCcEEEEEEecCCCEEEEEeC--CCeEEE
Q 004581 84 SDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRS-----LPRVSGRVLSVTWSADGNMLYSGSS--DGYIRS 156 (744)
Q Consensus 84 ~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~-----~~~h~~~V~~~~~s~dg~~l~t~~~--dg~i~v 156 (744)
.+..++.++.+.-.|..++...-.... +.....++ ..++ .+..+.. ++.+.-
T Consensus 155 ---------------~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-----~~~~-~vy~~~~~~~~~~~a 213 (370)
T COG1520 155 ---------------TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-----IASG-TVYVGSDGYDGILYA 213 (370)
T ss_pred ---------------EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-----eecc-eEEEecCCCcceEEE
Confidence 444444667776666665554321111 11111122 2233 3444444 667888
Q ss_pred EEccCCceEEEEEecCCCCCCCC--ceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCC
Q 004581 157 WDAKLGYEIYRITVGLGGLGSGP--ELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHN 234 (744)
Q Consensus 157 wd~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~ 234 (744)
.|.++|......+.....-.... ...+..-...-++.+..++.++.+...|..+|+.+..+... ..+ ++.
T Consensus 214 ~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~-~~~-------~~~ 285 (370)
T COG1520 214 LNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG-GSV-------QGS 285 (370)
T ss_pred EEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc-cEe-------ccC
Confidence 88889988877532110000000 01111111112334567777888999999999999888764 111 111
Q ss_pred EEEee---cCCCeEEEEEccc
Q 004581 235 RVFST---GSDGQVILYKASC 252 (744)
Q Consensus 235 ~l~~~---~~dg~i~iw~~~~ 252 (744)
.+.+. ..||.+.++....
T Consensus 286 ~~~~~~~~~~dG~v~~~~~~~ 306 (370)
T COG1520 286 GLYTTPVAGADGKVYIGFTDN 306 (370)
T ss_pred CeeEEeecCCCccEEEEEecc
Confidence 12221 2588888876544
No 433
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.93 E-value=4.7 Score=36.49 Aligned_cols=95 Identities=17% Similarity=0.194 Sum_probs=61.8
Q ss_pred EEEEEEecCCCEEEEE-eCCCeEEEEE--ccCCce-----EEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCE
Q 004581 133 VLSVTWSADGNMLYSG-SSDGYIRSWD--AKLGYE-----IYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSV 203 (744)
Q Consensus 133 V~~~~~s~dg~~l~t~-~~dg~i~vwd--~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i 203 (744)
-+.++|+.|.+.+... +.+-.|.-|| ..+|.. +..++.. +.. .+ ..--.++...+| ..++.-..++|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~-~~~--e~-~~PDGm~ID~eG~L~Va~~ng~~V 235 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKS-QPF--ES-LEPDGMTIDTEGNLYVATFNGGTV 235 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccC-CCc--CC-CCCCcceEccCCcEEEEEecCcEE
Confidence 3678999887766544 4566787787 556543 3333321 000 00 000112223355 56677778899
Q ss_pred EEEeCCCcceEEEeeccccceeEEEEcC
Q 004581 204 QFWDSRHGTLLQAHSFHKGDVNALAAAP 231 (744)
Q Consensus 204 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~ 231 (744)
...|..+|+.+.++......|+|++|--
T Consensus 236 ~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 236 QKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred EEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 9999999999999999999999999964
No 434
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.82 E-value=0.73 Score=51.21 Aligned_cols=154 Identities=12% Similarity=0.039 Sum_probs=91.4
Q ss_pred EEecCCCCeEEEEEcCCCCEEEE--E-cCCceEEEEeecCCCCCceEEeeeccCCc------ccccccEEEEeeCCC-EE
Q 004581 413 VKSKASRKIICSTISNSGMLFAY--S-DHVKPSLFELKKGKVGQGEWIINKRQLPR------KLQFAHSMIFSYDSS-QL 482 (744)
Q Consensus 413 ~~~~~~~~i~~~~~s~~g~~la~--~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~i~~spd~~-~l 482 (744)
+.......+..+...+|+.+.++ . .+..|..||+..-..... .....+.. ......++.|.|.=. ..
T Consensus 95 ~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~---~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~ 171 (1405)
T KOG3630|consen 95 FKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRY---ETTVPLKNSATSFEKPVFQLKNVWNPLVPLNS 171 (1405)
T ss_pred eeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhh---hhccccccccchhccccccccccccCCccchh
Confidence 33344456677777888877655 2 333677788764211111 00111111 111345566666432 23
Q ss_pred EEEeCCCcEEEEEccC-CceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCc--ceEEEEe
Q 004581 483 IIAGHDRRIYVVDVSS-SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ--RQHWFIS 559 (744)
Q Consensus 483 ~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~--~~~~~~~ 559 (744)
++...|+.|++..+.. .+.+..+. .....++++|||.|+.++.|...|++.-|...-. ..+...+
T Consensus 172 av~l~dlsl~V~~~~~~~~~v~s~p------------~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp 239 (1405)
T KOG3630|consen 172 AVDLSDLSLRVKSTKQLAQNVTSFP------------VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPP 239 (1405)
T ss_pred hhhccccchhhhhhhhhhhhhcccC------------cccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCC
Confidence 4456688888887742 23333344 4677999999999999999999999988875433 1111222
Q ss_pred cCCCCceeEEeecCCCCCeEEEE
Q 004581 560 RLEGASVTAAGFPPQNNNVLIIT 582 (744)
Q Consensus 560 ~~~~~~v~~l~~sp~~~~~l~~~ 582 (744)
......|.++.|-. ...+|++-
T Consensus 240 ~~e~yrvl~v~Wl~-t~eflvvy 261 (1405)
T KOG3630|consen 240 VEENYRVLSVTWLS-TQEFLVVY 261 (1405)
T ss_pred cCCCcceeEEEEec-ceeEEEEe
Confidence 22336899999987 66666653
No 435
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.80 E-value=0.69 Score=45.78 Aligned_cols=160 Identities=10% Similarity=0.117 Sum_probs=95.1
Q ss_pred CCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCC-ceEEeeeccCCcc-ccccc-EEEEeeCCCEEEEEeCCCcEEEE-
Q 004581 419 RKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQ-GEWIINKRQLPRK-LQFAH-SMIFSYDSSQLIIAGHDRRIYVV- 494 (744)
Q Consensus 419 ~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~-~~~~~~~~~~~~~-~~~v~-~i~~spd~~~l~~~~~dg~i~v~- 494 (744)
..+..+-+.|||+.+.+-+..++.++.+.+..-.. ++.+ .-++. ...++ ++..-..|.-|.+++.||-|.-|
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~----dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF 296 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVD----DSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF 296 (733)
T ss_pred cchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhh----cCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence 44566678899999888766888888887521111 1100 00110 01122 12222356678888889988777
Q ss_pred Ecc-CCc----eeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEE
Q 004581 495 DVS-SSE----LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAA 569 (744)
Q Consensus 495 d~~-~~~----~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l 569 (744)
|.. +++ .++.++- ...++..+.--.+.+-+++-+.+|++.++.....+....-+.. ..+..+
T Consensus 297 dvr~~~~p~l~h~R~f~l-----------~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~--~~~~~~ 363 (733)
T COG4590 297 DVRRDGQPHLNHIRNFKL-----------APAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAY--QAPQLV 363 (733)
T ss_pred eeecCCCCcceeeecccc-----------CcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhh--cCccee
Confidence 332 222 2222222 2244444443445566777888899988876655544333322 367889
Q ss_pred eecCCCCCeEEEEecCCeEEEEEcCCCc
Q 004581 570 GFPPQNNNVLIITTSSNQVYVFDVEAKQ 597 (744)
Q Consensus 570 ~~sp~~~~~l~~~~~d~~v~vwd~~~~~ 597 (744)
++|| .+.+|++-. .|.++++.+++.-
T Consensus 364 ~~Sp-~~~~Ll~e~-~gki~~~~l~Nr~ 389 (733)
T COG4590 364 AMSP-NQAYLLSED-QGKIRLAQLENRN 389 (733)
T ss_pred eeCc-ccchheeec-CCceEEEEecCCC
Confidence 9999 888887753 5689999998773
No 436
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.55 E-value=3.1 Score=45.14 Aligned_cols=165 Identities=10% Similarity=0.122 Sum_probs=92.8
Q ss_pred CCEEEEEcCCceEEEEeecCCCCCc---eEEeeecc----CCc-------ccccccEEEEee--CCCEEEEEeCCCcEEE
Q 004581 430 GMLFAYSDHVKPSLFELKKGKVGQG---EWIINKRQ----LPR-------KLQFAHSMIFSY--DSSQLIIAGHDRRIYV 493 (744)
Q Consensus 430 g~~la~~~~~~v~l~~~~~~~~~~~---~~~~~~~~----~~~-------~~~~v~~i~~sp--d~~~l~~~~~dg~i~v 493 (744)
..++.++..+.|.+|++........ .+.+.... ... ....|+.|.... +...|+++..||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 7788889999999999875222110 01111000 000 111344444332 4567888999999999
Q ss_pred EEccCC-ceeeeeccC------c-ccccccCCCCCCceEEEEEC--CCCCEEEEEeCCCcEEEEECCCcceEEEE--ecC
Q 004581 494 VDVSSS-ELLHTFTPC------R-EEHDREIQPSEPPITKMFTS--SDGQWLAAVNCFGDVYIFNLEIQRQHWFI--SRL 561 (744)
Q Consensus 494 ~d~~~~-~~~~~~~~~------~-~~~~~~~~~~~~~i~~l~~s--pdg~~las~~~dg~i~iwd~~~~~~~~~~--~~~ 561 (744)
|.+++- +.+...... + .....-........+.++++ ...++||+++....|.||-+......... ...
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~ 208 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQ 208 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccc
Confidence 987321 000000000 0 00000001134578899998 88889999988888888766542111111 111
Q ss_pred CCCceeEEeecCCC--CC---eEEEEecCCeEEEEEcC
Q 004581 562 EGASVTAAGFPPQN--NN---VLIITTSSNQVYVFDVE 594 (744)
Q Consensus 562 ~~~~v~~l~~sp~~--~~---~l~~~~~d~~v~vwd~~ 594 (744)
+...|-+++|-+++ +. +|++++-.|.+.+|++.
T Consensus 209 ~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 209 HSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred cccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 33478899998722 22 78888999999998884
No 437
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.51 E-value=6.4 Score=36.67 Aligned_cols=238 Identities=8% Similarity=-0.019 Sum_probs=134.9
Q ss_pred cceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEE
Q 004581 366 HNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFE 445 (744)
Q Consensus 366 ~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~ 445 (744)
..++-.|||.+-.+..+.--+=.++...+ .+.+...+.......+.+-|||..-++-+...|.-++
T Consensus 65 ~dvapapdG~VWft~qg~gaiGhLdP~tG--------------ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~d 130 (353)
T COG4257 65 FDVAPAPDGAVWFTAQGTGAIGHLDPATG--------------EVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLD 130 (353)
T ss_pred cccccCCCCceEEecCccccceecCCCCC--------------ceEEEecCCCCCCceEEECCCCCeeEecCcceeEEec
Confidence 35566677766555544333333332222 2455555555677788888998765553332333333
Q ss_pred eecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEE
Q 004581 446 LKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITK 525 (744)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 525 (744)
-. ......|.+.. ...........|.++|++-+++.. |.---.|-. ...+.+|... ....-..
T Consensus 131 pk--t~evt~f~lp~---~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa-~~~i~vfpaP----------qG~gpyG 193 (353)
T COG4257 131 PK--TLEVTRFPLPL---EHADANLETAVFDPWGNLWFTGQI-GAYGRLDPA-RNVISVFPAP----------QGGGPYG 193 (353)
T ss_pred Cc--ccceEEeeccc---ccCCCcccceeeCCCccEEEeecc-ccceecCcc-cCceeeeccC----------CCCCCcc
Confidence 22 12333333331 122236778889999999888753 211111211 1234444432 3445678
Q ss_pred EEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCC--CCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccc
Q 004581 526 MFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLE--GASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSM 603 (744)
Q Consensus 526 l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~ 603 (744)
|+..|||..-++.-.+..|-..|..++.. ..++... ...-+.+--+| -+..-++....+.++.||-......+|-
T Consensus 194 i~atpdGsvwyaslagnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdp-ig~~wittwg~g~l~rfdPs~~sW~eyp- 270 (353)
T COG4257 194 ICATPDGSVWYASLAGNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDP-IGRAWITTWGTGSLHRFDPSVTSWIEYP- 270 (353)
T ss_pred eEECCCCcEEEEeccccceEEcccccCCc-ceecCCCcccccccccccCc-cCcEEEeccCCceeeEeCcccccceeee-
Confidence 89999999888877777788777776633 2232211 12334454556 6777777777789999998877654432
Q ss_pred cccCCcccccccCCCceEEEEeCCCCCCcEEEEE--cCceEEEEeCCC
Q 004581 604 QHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIY--SARAMCVIDFGR 649 (744)
Q Consensus 604 ~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~--~~~~~~~~~~~~ 649 (744)
+.+.+..-.++..+.. .|+|++ +++.+..+|..+
T Consensus 271 ---------LPgs~arpys~rVD~~---grVW~sea~agai~rfdpet 306 (353)
T COG4257 271 ---------LPGSKARPYSMRVDRH---GRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred ---------CCCCCCCcceeeeccC---CcEEeeccccCceeecCccc
Confidence 3334445556666654 458874 556677777533
No 438
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.45 E-value=10 Score=38.79 Aligned_cols=148 Identities=16% Similarity=0.237 Sum_probs=81.3
Q ss_pred eEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCC
Q 004581 99 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSG 178 (744)
Q Consensus 99 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 178 (744)
.+.+++.++.++.+|..+++..-. +..... -.+..-..-.++. +..++.++.+...|..+|...........
T Consensus 113 ~i~~g~~~g~~y~ld~~~G~~~W~-~~~~~~-~~~~~~~v~~~~~-v~~~s~~g~~~al~~~tG~~~W~~~~~~~----- 184 (370)
T COG1520 113 KIYVGSWDGKLYALDASTGTLVWS-RNVGGS-PYYASPPVVGDGT-VYVGTDDGHLYALNADTGTLKWTYETPAP----- 184 (370)
T ss_pred eEEEecccceEEEEECCCCcEEEE-EecCCC-eEEecCcEEcCcE-EEEecCCCeEEEEEccCCcEEEEEecCCc-----
Confidence 688999999888888765655422 222221 1222333333443 33344789999999999999888664211
Q ss_pred CceeEEEEEEecCCeEEEEcC--CCCEEEEeCCCcceEEEeeccc----cceeEEEEcCC-----CCEEEeecCCCeEEE
Q 004581 179 PELCIWSLLSLRCGTLVSADS--TGSVQFWDSRHGTLLQAHSFHK----GDVNALAAAPS-----HNRVFSTGSDGQVIL 247 (744)
Q Consensus 179 ~~~~v~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~h~----~~v~~l~~~~~-----~~~l~~~~~dg~i~i 247 (744)
....+..--...++.++.+.. ++.+.-.|..+|+.....+.+. ..+........ +..++.++.++.+..
T Consensus 185 ~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~ 264 (370)
T COG1520 185 LSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLC 264 (370)
T ss_pred cccccccCceeecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEE
Confidence 011111111134556666665 6677778888888876643211 11100111111 122455666777778
Q ss_pred EEcccCc
Q 004581 248 YKASCES 254 (744)
Q Consensus 248 w~~~~~~ 254 (744)
.+..+++
T Consensus 265 l~~~~G~ 271 (370)
T COG1520 265 LDADTGE 271 (370)
T ss_pred EEcCCCc
Confidence 8877766
No 439
>PRK10115 protease 2; Provisional
Probab=93.45 E-value=2.2 Score=47.41 Aligned_cols=111 Identities=11% Similarity=0.118 Sum_probs=69.7
Q ss_pred cccEEEEeeCCCEEEEEeC-CC----cEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCC--
Q 004581 469 FAHSMIFSYDSSQLIIAGH-DR----RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF-- 541 (744)
Q Consensus 469 ~v~~i~~spd~~~l~~~~~-dg----~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~d-- 541 (744)
.+..+.+||||++|+.+.. +| .|++.|+.+|+.+...-. ... ..++|++|++.|+....+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~-----------~~~--~~~~w~~D~~~~~y~~~~~~ 194 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD-----------NVE--PSFVWANDSWTFYYVRKHPV 194 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc-----------Ccc--eEEEEeeCCCEEEEEEecCC
Confidence 5667789999999988744 23 688999988864322211 111 469999999977665432
Q ss_pred ----CcEEEEECCCc--ceEEEEecCCCCcee-EEeecCCCCCeEEEEecC---CeEEEEEcC
Q 004581 542 ----GDVYIFNLEIQ--RQHWFISRLEGASVT-AAGFPPQNNNVLIITTSS---NQVYVFDVE 594 (744)
Q Consensus 542 ----g~i~iwd~~~~--~~~~~~~~~~~~~v~-~l~~sp~~~~~l~~~~~d---~~v~vwd~~ 594 (744)
..|+.+++.++ +....+.... .... ....+. ++++++..+.. +.+.+|+..
T Consensus 195 ~~~~~~v~~h~lgt~~~~d~lv~~e~~-~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 195 TLLPYQVWRHTIGTPASQDELVYEEKD-DTFYVSLHKTT-SKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred CCCCCEEEEEECCCChhHCeEEEeeCC-CCEEEEEEEcC-CCCEEEEEEECCccccEEEEECc
Confidence 36888899888 3333343222 2222 333344 77877665543 478888853
No 440
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.37 E-value=0.0087 Score=59.08 Aligned_cols=144 Identities=13% Similarity=0.077 Sum_probs=98.7
Q ss_pred CCCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCC
Q 004581 3 LPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEN 82 (744)
Q Consensus 3 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (744)
+.+..|+.++.+..|..||- .++..-.+. ..+..-.|+|..++..
T Consensus 44 ~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdv--------------------------------- 88 (615)
T KOG2247|consen 44 PEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDV--------------------------------- 88 (615)
T ss_pred cCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccch---------------------------------
Confidence 44556888888888888883 333333332 2445556666666632
Q ss_pred CCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeeccc-CccCcEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 004581 83 DSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLP-RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL 161 (744)
Q Consensus 83 ~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~ 161 (744)
.++.+-..+.+.+||+.+...-+ -.+. .|.... +.|++.+..++.+...|.++|++-.+
T Consensus 89 ----------------lavlAek~~piylwd~n~eytqq--LE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgt 148 (615)
T KOG2247|consen 89 ----------------LAVLAEKTGPIYLWDVNSEYTQQ--LESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGT 148 (615)
T ss_pred ----------------hhhhhhcCCCeeechhhhhhHHH--HhccCcchHHH--HhhccCCccccccccccceEEEeccc
Confidence 44555677899999997443321 1111 233333 78999999999999999999999877
Q ss_pred CceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCC
Q 004581 162 GYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSR 209 (744)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~ 209 (744)
.+.+..+- .|...+.++++.+.++.+.++.|..+.+-...
T Consensus 149 sR~iiv~G--------kh~RRgtq~av~lEd~vil~dcd~~L~v~~qe 188 (615)
T KOG2247|consen 149 SRRIIVMG--------KHQRRGTQIAVTLEDYVILCDCDNTLSVTTQE 188 (615)
T ss_pred hhhhhhhc--------ccccceeEEEecccceeeecCcHHHHHHhhhc
Confidence 76665553 48899999999999999988888776654433
No 441
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=93.16 E-value=19 Score=40.97 Aligned_cols=173 Identities=14% Similarity=0.115 Sum_probs=100.5
Q ss_pred CCeEEEEEc-------CCCCEEEEEcCCceEEEEeecCCC------C------CceEEeeeccCCcccccccEEEEee-C
Q 004581 419 RKIICSTIS-------NSGMLFAYSDHVKPSLFELKKGKV------G------QGEWIINKRQLPRKLQFAHSMIFSY-D 478 (744)
Q Consensus 419 ~~i~~~~~s-------~~g~~la~~~~~~v~l~~~~~~~~------~------~~~~~~~~~~~~~~~~~v~~i~~sp-d 478 (744)
.+|..++|+ +..++|++-....+.|+....... . ..+..+......+ .+...++|+| +
T Consensus 80 ~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg--~~~aDv~FnP~~ 157 (765)
T PF10214_consen 80 SPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGG--FPHADVAFNPWD 157 (765)
T ss_pred CCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCC--CccceEEeccCc
Confidence 556666666 233588888888888888332111 1 0111111111111 1677899998 5
Q ss_pred CCEEEEEeCCCcEEEEEccCCce--eeeeccCccccccc--CCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcce
Q 004581 479 SSQLIIAGHDRRIYVVDVSSSEL--LHTFTPCREEHDRE--IQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ 554 (744)
Q Consensus 479 ~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~~~~~--~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~ 554 (744)
.+.||+.+..|...||++..... ...+.......+.- .......-..+.|.++-+.|+.++.. .+.++|+++...
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~~~~~~ 236 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDFESNWQ 236 (765)
T ss_pred cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEECCCCCc
Confidence 56899999999999999921111 01111100000000 00012444588999998888887654 599999998866
Q ss_pred EE-EEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCC
Q 004581 555 HW-FISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 595 (744)
Q Consensus 555 ~~-~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~ 595 (744)
.. .........|..+.-+|.+..++++-+ ...|...++..
T Consensus 237 ~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 237 TEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred cchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 43 222223368999998883334444443 36788888887
No 442
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.16 E-value=6 Score=39.51 Aligned_cols=105 Identities=21% Similarity=0.246 Sum_probs=65.1
Q ss_pred EEEEEEecCCCEEEEEeCC------CeEEEEEccCCceEEEEEecCCC-------CCCCCceeEEEEEEecCC-eEEEEc
Q 004581 133 VLSVTWSADGNMLYSGSSD------GYIRSWDAKLGYEIYRITVGLGG-------LGSGPELCIWSLLSLRCG-TLVSAD 198 (744)
Q Consensus 133 V~~~~~s~dg~~l~t~~~d------g~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~-~l~s~~ 198 (744)
.-+|++.++|.++++.=.+ ..|+.++.. |+.+..+..+..- ..........+++++|+| .|+++.
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 3478888888888877667 789999976 8887777543321 223456778999999999 466553
Q ss_pred C-----CC--C-------EEE--EeCCC-cceEEE----eec-----cccceeEEEEcCCCCEEEe
Q 004581 199 S-----TG--S-------VQF--WDSRH-GTLLQA----HSF-----HKGDVNALAAAPSHNRVFS 238 (744)
Q Consensus 199 ~-----dg--~-------i~v--wd~~~-~~~~~~----~~~-----h~~~v~~l~~~~~~~~l~~ 238 (744)
+ |+ . +++ +|..+ +..... +.. ....|..+++.+++++|+.
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 3 22 1 444 44443 322222 221 2456777777777775553
No 443
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.03 E-value=1.4 Score=49.21 Aligned_cols=126 Identities=10% Similarity=-0.029 Sum_probs=81.3
Q ss_pred EecCCeEEEEEecCCC--------ceeEeecccCccCcEEEEEEecCCC-EEEEEeCCCeEEEEEccCCceE-EEEEecC
Q 004581 103 ACDDGCVRIYRITDSD--------ELIYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKLGYEI-YRITVGL 172 (744)
Q Consensus 103 ~~~dg~i~iwd~~~~~--------~~~~~~~~~~h~~~V~~~~~s~dg~-~l~t~~~dg~i~vwd~~~~~~~-~~~~~~~ 172 (744)
.+.+-.|..||+..-. .+...++......-..++.|+|.=. ..+.+..|+.|+|..+...... ..+
T Consensus 120 tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~---- 195 (1405)
T KOG3630|consen 120 TSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF---- 195 (1405)
T ss_pred ecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc----
Confidence 3445578999986321 1222222223334567888988643 4566677999998876432221 122
Q ss_pred CCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeec----cccceeEEEEcCCCCEEEe
Q 004581 173 GGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSF----HKGDVNALAAAPSHNRVFS 238 (744)
Q Consensus 173 ~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~----h~~~v~~l~~~~~~~~l~~ 238 (744)
.....+++++|+|.| +++.|...|++.-|... .+....+.+ ....|.|++|-....++++
T Consensus 196 -----p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 196 -----PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred -----CcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 356778999999999 99999999999888765 443333332 1467999999876666554
No 444
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.93 E-value=1.8 Score=43.04 Aligned_cols=145 Identities=11% Similarity=0.060 Sum_probs=89.2
Q ss_pred ccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEe
Q 004581 91 EQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITV 170 (744)
Q Consensus 91 ~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 170 (744)
-.++.+.+.+..+...|.+.=|-+.....-.....-...+++|.++.||+|.+.||.--.+.+|.+.+....+.......
T Consensus 27 gvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~ 106 (657)
T KOG2377|consen 27 GVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ 106 (657)
T ss_pred ceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH
Confidence 33444445555555567777777763221111122223567999999999999999999999999999743332221111
Q ss_pred cCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCC-cceEEEeeccccceeEEEEcCCCCEEEeec
Q 004581 171 GLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRH-GTLLQAHSFHKGDVNALAAAPSHNRVFSTG 240 (744)
Q Consensus 171 ~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~ 240 (744)
.. ......|....|+.+.-++.-...| +.+|.... .+.++..+.|...|.--.|+++.+.++-++
T Consensus 107 ~c----k~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 107 EC----KTKNANILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred Hh----ccCcceeEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 00 0234457888888765555544444 55555432 445566677888999999999887655443
No 445
>PHA02790 Kelch-like protein; Provisional
Probab=92.65 E-value=6.3 Score=41.91 Aligned_cols=142 Identities=9% Similarity=-0.002 Sum_probs=65.4
Q ss_pred ccCCeEEEEecCC-----eEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCC--CeEEEEEccCCceEEE
Q 004581 95 VEDRRVALACDDG-----CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD--GYIRSWDAKLGYEIYR 167 (744)
Q Consensus 95 ~~~~~la~~~~dg-----~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~d--g~i~vwd~~~~~~~~~ 167 (744)
.++..+++|+.++ .+..||..++.- .....+.........+ .-+|...+.|+.+ ..+..||..+++-...
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W-~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNW-IPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEE-EECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence 3455667777543 466777764332 1112222211112222 2367777777753 3577888765432211
Q ss_pred EEecCCCCCCCCceeEEEEEEecCC-eEEEEcCC---CCEEEEeCCCcceEEEe--eccccceeEEEEcCCCCEEEeecC
Q 004581 168 ITVGLGGLGSGPELCIWSLLSLRCG-TLVSADST---GSVQFWDSRHGTLLQAH--SFHKGDVNALAAAPSHNRVFSTGS 241 (744)
Q Consensus 168 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~d---g~i~vwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~~~~~ 241 (744)
.++. ....-.+++.. +| ..+.|+.+ ..+..||.++.+....- ...... .+++ .-++...+.|
T Consensus 347 --~~l~-----~~r~~~~~~~~-~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~~-~~~~~IYv~G-- 414 (480)
T PHA02790 347 --PSLL-----KPRCNPAVASI-NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCAL-VFGRRLFLVG-- 414 (480)
T ss_pred --CCCC-----CCCcccEEEEE-CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceEE-EECCEEEEEC--
Confidence 1111 11111122222 45 45666654 34778888766543321 111111 1222 2345444445
Q ss_pred CCeEEEEEccc
Q 004581 242 DGQVILYKASC 252 (744)
Q Consensus 242 dg~i~iw~~~~ 252 (744)
|.+.+||..+
T Consensus 415 -G~~e~ydp~~ 424 (480)
T PHA02790 415 -RNAEFYCESS 424 (480)
T ss_pred -CceEEecCCC
Confidence 3467777655
No 446
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.34 E-value=5.6 Score=44.06 Aligned_cols=79 Identities=16% Similarity=0.115 Sum_probs=54.5
Q ss_pred CcEEEEEEecCCCEEEEEeCCCeEEEEEcc----------CCceE---EEEEecCCCCCCCCceeEEEEEEecCC----e
Q 004581 131 GRVLSVTWSADGNMLYSGSSDGYIRSWDAK----------LGYEI---YRITVGLGGLGSGPELCIWSLLSLRCG----T 193 (744)
Q Consensus 131 ~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~----------~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~----~ 193 (744)
-.|..+.++|+|++||..|..|. .|-.+- .|+.. +.+.....-+.......|..+.|+|.+ .
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 36889999999999999988754 333331 12221 122222222233567789999999974 7
Q ss_pred EEEEcCCCCEEEEeCCC
Q 004581 194 LVSADSTGSVQFWDSRH 210 (744)
Q Consensus 194 l~s~~~dg~i~vwd~~~ 210 (744)
|+.-.+|+++|+||+..
T Consensus 164 l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEEecCCEEEEEecCC
Confidence 99999999999999975
No 447
>PRK10115 protease 2; Provisional
Probab=92.21 E-value=23 Score=39.62 Aligned_cols=48 Identities=8% Similarity=-0.169 Sum_probs=28.6
Q ss_pred CCCCCCeeEEe-----cCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCcc
Q 004581 1 MGLPGGRLFSS-----SIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSL 50 (744)
Q Consensus 1 ~~~~~~~l~~~-----~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~ 50 (744)
|+++|.+|+.+ +....|.+-|+.+|..+...- .+.-..++|++|++.+
T Consensus 134 ~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--~~~~~~~~w~~D~~~~ 186 (686)
T PRK10115 134 ITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--DNVEPSFVWANDSWTF 186 (686)
T ss_pred ECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--cCcceEEEEeeCCCEE
Confidence 45666666554 333478888998886443221 1111468999998533
No 448
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=91.97 E-value=11 Score=35.55 Aligned_cols=199 Identities=13% Similarity=0.129 Sum_probs=121.5
Q ss_pred ccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEc-CCce
Q 004581 363 HLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSD-HVKP 441 (744)
Q Consensus 363 ~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~-~~~v 441 (744)
..+..+.++.+-.+++-.+..++|.++....... .+..+... ....++.+ .|++..++. +..+
T Consensus 87 ~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~------------~~~~lnt~--gyaygv~v--sGn~aYVadlddgf 150 (370)
T COG5276 87 DLFADVRVSEEYVYVADWSSGLRIVDISTPDSPT------------LIGFLNTD--GYAYGVYV--SGNYAYVADLDDGF 150 (370)
T ss_pred hhhheeEecccEEEEEcCCCceEEEeccCCCCcc------------eeccccCC--ceEEEEEe--cCCEEEEeeccCcE
Confidence 5566788888888899888999999998776432 22222222 22334333 467766653 6677
Q ss_pred EEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCC
Q 004581 442 SLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEP 521 (744)
Q Consensus 442 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (744)
-++++..+..... . ............++.| |++-..+..|+-+.|.|+.+... .+|.++.. ...
T Consensus 151 LivdvsdpssP~l---a--grya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~s-Pvli~~~n--------~g~ 214 (370)
T COG5276 151 LIVDVSDPSSPQL---A--GRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHS-PVLIGSYN--------TGP 214 (370)
T ss_pred EEEECCCCCCcee---e--eeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCC-CeEEEEEe--------cCC
Confidence 7788875322211 1 1111111123566664 67777778888899999964321 12222111 244
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEE-eecCCCCCeEEEEecCCeEEEEEcCCC
Q 004581 522 PITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAA-GFPPQNNNVLIITTSSNQVYVFDVEAK 596 (744)
Q Consensus 522 ~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l-~~sp~~~~~l~~~~~d~~v~vwd~~~~ 596 (744)
.+.++..|++-.+++.. +--+.+-|..+.+..+.+-......+-++ .|.- .+++..++..+.-+.+-|+++.
T Consensus 215 g~~sv~vsdnr~y~vvy--~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~V-s~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 215 GTYSVSVSDNRAYLVVY--DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPV-SGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred ceEEEEecCCeeEEEEc--ccceEEEecCCCCCceEeeccccCCcccccceec-ccceeeeeccccCceeEeccCC
Confidence 68888888886666554 44488889888887666655444444443 2332 4688888888877778888765
No 449
>PHA02790 Kelch-like protein; Provisional
Probab=91.92 E-value=11 Score=40.15 Aligned_cols=144 Identities=9% Similarity=0.008 Sum_probs=68.9
Q ss_pred ccCCeEEEEecC--CeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCC---eEEEEEccCCceEEEEE
Q 004581 95 VEDRRVALACDD--GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDG---YIRSWDAKLGYEIYRIT 169 (744)
Q Consensus 95 ~~~~~la~~~~d--g~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg---~i~vwd~~~~~~~~~~~ 169 (744)
.++...++|+.+ ..+..||..++ .......+.........+ .-+|+..+.|+.++ .+..||..+.+-.. .
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n-~W~~~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~--~ 391 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDA-AWVNMPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQF--G 391 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCC-eEEECCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEe--C
Confidence 344566777653 35777876533 222222332111112222 23677777777543 46788876654322 1
Q ss_pred ecCCCCCCCCceeEEEEEEecCCe-EEEEcCCCCEEEEeCCCcceEEE--eeccccceeEEEEcCCCCEEEeecCC----
Q 004581 170 VGLGGLGSGPELCIWSLLSLRCGT-LVSADSTGSVQFWDSRHGTLLQA--HSFHKGDVNALAAAPSHNRVFSTGSD---- 242 (744)
Q Consensus 170 ~~~~~~~~~~~~~v~~~~~~~~~~-l~s~~~dg~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~~~~~d---- 242 (744)
.++. ....-.+++ .-++. .+.| |.+.+||.++.+.... +....... +++. -+++..+.||.+
T Consensus 392 ~~m~-----~~r~~~~~~-~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~ 460 (480)
T PHA02790 392 PSTY-----YPHYKSCAL-VFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSY 460 (480)
T ss_pred CCCC-----CccccceEE-EECCEEEEEC---CceEEecCCCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcc
Confidence 1111 111111222 23554 4444 4578899887654422 22111222 2222 256677777754
Q ss_pred -CeEEEEEcccCc
Q 004581 243 -GQVILYKASCES 254 (744)
Q Consensus 243 -g~i~iw~~~~~~ 254 (744)
..+..||..++.
T Consensus 461 ~~~ve~Yd~~~~~ 473 (480)
T PHA02790 461 IDTIEVYNNRTYS 473 (480)
T ss_pred cceEEEEECCCCe
Confidence 356777776643
No 450
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.91 E-value=0.21 Score=53.70 Aligned_cols=119 Identities=11% Similarity=0.115 Sum_probs=67.0
Q ss_pred cccccEEEEee-CCCEEEEEeCCCcEEEEEcc--CCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCc
Q 004581 467 LQFAHSMIFSY-DSSQLIIAGHDRRIYVVDVS--SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGD 543 (744)
Q Consensus 467 ~~~v~~i~~sp-d~~~l~~~~~dg~i~v~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~ 543 (744)
.+.+-.++|-. +...++ ..-|.+.|||++ .|+....+..+... ........|.-.-|-++.-++..+..++.
T Consensus 132 ~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~---p~gs~~~~V~wcp~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 132 PGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPIT---PYGSDPQLVSWCPIAVNKVYICYGLKGGE 206 (1283)
T ss_pred CCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecC---cCCCCcceeeecccccccceeeeccCCCc
Confidence 34666677621 222222 234678899985 55544333321100 00011123333344457778888889999
Q ss_pred EEEEECCCcceEEEEecCCCCceeEEe-----------ecCCCCCeEEEEecCCeEEEEEc
Q 004581 544 VYIFNLEIQRQHWFISRLEGASVTAAG-----------FPPQNNNVLIITTSSNQVYVFDV 593 (744)
Q Consensus 544 i~iwd~~~~~~~~~~~~~~~~~v~~l~-----------~sp~~~~~l~~~~~d~~v~vwd~ 593 (744)
|++.++++... ..+.. |+..++.++ .|| ||..+|.+..||.++.|.+
T Consensus 207 i~lL~~~ra~~-~l~rs-Hs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 207 IRLLNINRALR-SLFRS-HSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eeEeeechHHH-HHHHh-cCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeee
Confidence 99888765433 22223 655555544 467 8888888888887777765
No 451
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.70 E-value=0.23 Score=53.40 Aligned_cols=121 Identities=17% Similarity=0.176 Sum_probs=75.3
Q ss_pred cccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEE-----------ecCCCEEEEEeCCCeE
Q 004581 86 SDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTW-----------SADGNMLYSGSSDGYI 154 (744)
Q Consensus 86 ~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~-----------s~dg~~l~t~~~dg~i 154 (744)
-....|..+.+.-++..+-.++.|++..+..... ..+.+|..++..++| ||||+.+|.++.||.+
T Consensus 184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v 259 (1283)
T KOG1916|consen 184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSV 259 (1283)
T ss_pred ceeeecccccccceeeeccCCCceeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcc
Confidence 3455666667778888888999999988864333 556678877766554 8999999999999999
Q ss_pred EEEEcc-CCceEEEEEecCCCCCCCCc-eeEEEEEEecC-------C---eEEEE-cCCCCEEEEeCCCcceE
Q 004581 155 RSWDAK-LGYEIYRITVGLGGLGSGPE-LCIWSLLSLRC-------G---TLVSA-DSTGSVQFWDSRHGTLL 214 (744)
Q Consensus 155 ~vwd~~-~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~-------~---~l~s~-~~dg~i~vwd~~~~~~~ 214 (744)
+.|.+. +|+...++...- +.|. .+-.|..|..+ + .++++ .....+++|.-...+|+
T Consensus 260 ~f~Qiyi~g~~~~rclhew----kphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 260 GFYQIYITGKIVHRCLHEW----KPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ceeeeeeeccccHhhhhcc----CCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 998753 233322221110 0222 22222224432 1 23444 34556999987766665
No 452
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.30 E-value=1.4 Score=47.68 Aligned_cols=62 Identities=19% Similarity=0.318 Sum_probs=43.7
Q ss_pred CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCC---C---EEEEEeCCCeEEEEEc
Q 004581 98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADG---N---MLYSGSSDGYIRSWDA 159 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg---~---~l~t~~~dg~i~vwd~ 159 (744)
++||+++....|.||-......-.+...-..|...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 178 rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 178 RLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 588888888899999876322111111122367789999997754 2 7888888999999887
No 453
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.10 E-value=20 Score=36.73 Aligned_cols=109 Identities=15% Similarity=0.191 Sum_probs=68.7
Q ss_pred cCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCce-----EEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEE
Q 004581 130 SGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYE-----IYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQ 204 (744)
Q Consensus 130 ~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~ 204 (744)
...++++.|.+++..++++ .+|.+. |....|+. ...... ......+.++.|.+++.++.++..|.+.
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~------~~~~~~l~~v~~~~d~~~~a~G~~G~v~ 351 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADI------KSRGFGILDVGYRSKKEAWAAGGSGILL 351 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeeccc------CCCCcceEEEEEcCCCcEEEEECCCcEE
Confidence 4578999999999877766 455543 44445532 222221 0123458899999999888888888777
Q ss_pred EEeCCCcceEEEee---ccccceeEEEEcCCCCEEEeecCCCeEEEE
Q 004581 205 FWDSRHGTLLQAHS---FHKGDVNALAAAPSHNRVFSTGSDGQVILY 248 (744)
Q Consensus 205 vwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw 248 (744)
... ..|+.-.... .-......+.|.++++ .+..+.+|.|.-|
T Consensus 352 ~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G~il~~ 396 (398)
T PLN00033 352 RST-DGGKSWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDGVLLRY 396 (398)
T ss_pred EeC-CCCcceeEccccCCCCcceeEEEEcCCCc-eEEEeCCcEEEEe
Confidence 764 3344333322 2245688999987765 4445578887655
No 454
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.08 E-value=1.9 Score=39.87 Aligned_cols=79 Identities=16% Similarity=0.230 Sum_probs=50.7
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCccccc---ccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEEC
Q 004581 473 MIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHD---REIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL 549 (744)
Q Consensus 473 i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~ 549 (744)
+.+..++++|++.+.+|.+++||+.+++.+..-..-.+... .........|..+.++.+|.-|++-+ +|..+.|+.
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 34567899999999999999999988765432210000000 00002566788888888887776654 577788876
Q ss_pred CCc
Q 004581 550 EIQ 552 (744)
Q Consensus 550 ~~~ 552 (744)
+-+
T Consensus 95 ~L~ 97 (219)
T PF07569_consen 95 DLG 97 (219)
T ss_pred ccc
Confidence 543
No 455
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=91.05 E-value=1.8 Score=47.06 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=48.9
Q ss_pred cCCeEEEEecCCeEEEEEecC----CCceeEeecccC--------------------ccCcEEEEEEec----CCCEEEE
Q 004581 96 EDRRVALACDDGCVRIYRITD----SDELIYHRSLPR--------------------VSGRVLSVTWSA----DGNMLYS 147 (744)
Q Consensus 96 ~~~~la~~~~dg~i~iwd~~~----~~~~~~~~~~~~--------------------h~~~V~~~~~s~----dg~~l~t 147 (744)
+...++++..||.+....... +..... ..+.. -.+.+.+++.++ +..+|++
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSE-ELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE-----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEE-EEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 677899999999998888764 111110 11111 124566677776 7789999
Q ss_pred EeCCCeEEEEEccCCceEEEEEe
Q 004581 148 GSSDGYIRSWDAKLGYEIYRITV 170 (744)
Q Consensus 148 ~~~dg~i~vwd~~~~~~~~~~~~ 170 (744)
.+.|+++|+||+.+++++.....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEET
T ss_pred EeCCCeEEEEECCCCeEEEEecc
Confidence 99999999999999999888763
No 456
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.61 E-value=12 Score=33.39 Aligned_cols=132 Identities=19% Similarity=0.210 Sum_probs=72.6
Q ss_pred eEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCC
Q 004581 99 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSG 178 (744)
Q Consensus 99 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 178 (744)
.-+..-.+|.-.++|..+-+.+ ..+.- ++.=..+ ..|++.|..++...+++.-|.++-....++.....+.
T Consensus 103 ~y~LTw~egvaf~~d~~t~~~l---g~~~y-~GeGWgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~--- 173 (262)
T COG3823 103 FYQLTWKEGVAFKYDADTLEEL---GRFSY-EGEGWGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGV--- 173 (262)
T ss_pred EEEEEeccceeEEEChHHhhhh---ccccc-CCcceee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCe---
Confidence 4445567788888888755554 22221 1222333 3477778877766688888877766555555432221
Q ss_pred CceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEee------------ccccceeEEEEcCCCCEEEeec
Q 004581 179 PELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHS------------FHKGDVNALAAAPSHNRVFSTG 240 (744)
Q Consensus 179 ~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~------------~h~~~v~~l~~~~~~~~l~~~~ 240 (744)
.-..+.-+.|- || .++-.-.+..|..-|.++|+.+..+. .|..-.+.+++.|++..++..+
T Consensus 174 pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 174 PVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 11222333343 34 33333344455556666666655442 2344567899999885555443
No 457
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.41 E-value=1.6 Score=40.35 Aligned_cols=76 Identities=18% Similarity=0.233 Sum_probs=49.9
Q ss_pred EecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCC-------CCceeEEEEEEecCCeEEEEcCCCCEEEEeCCC
Q 004581 138 WSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS-------GPELCIWSLLSLRCGTLVSADSTGSVQFWDSRH 210 (744)
Q Consensus 138 ~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~ 210 (744)
+..++++|++.+.+|.+++||+.+++.+..-. ....... .....|..+..+.+|..+..-++|....|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~-Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPV-SIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCc-cHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence 44578999999999999999999987754431 0000000 345667777778777433444567788887765
Q ss_pred cceE
Q 004581 211 GTLL 214 (744)
Q Consensus 211 ~~~~ 214 (744)
+..+
T Consensus 97 ~~W~ 100 (219)
T PF07569_consen 97 GCWI 100 (219)
T ss_pred ceeE
Confidence 4443
No 458
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.97 E-value=25 Score=36.03 Aligned_cols=106 Identities=13% Similarity=0.160 Sum_probs=62.3
Q ss_pred EEEEEEecCCCEEEEEeCCCeEEEEEccCCceE-EEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCc
Q 004581 133 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI-YRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHG 211 (744)
Q Consensus 133 V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 211 (744)
...+..++||.+++.+..-..++-|| .|... ..... .....+.++.+.+++.++..+..|.+.. ....+
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~-------~~~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G 310 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNR-------ASARRIQNMGWRADGGLWLLTRGGGLYV-SKGTG 310 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecC-------CCccceeeeeEcCCCCEEEEeCCceEEE-ecCCC
Confidence 44566778888777765443344454 34332 22221 3556788999999996666667777544 33334
Q ss_pred c-----eEEEeec--cccceeEEEEcCCCCEEEeecCCCeEEEEE
Q 004581 212 T-----LLQAHSF--HKGDVNALAAAPSHNRVFSTGSDGQVILYK 249 (744)
Q Consensus 212 ~-----~~~~~~~--h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~ 249 (744)
+ ....... ....+..+.|.+++.. +.++..|.+....
T Consensus 311 ~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~-~a~G~~G~v~~s~ 354 (398)
T PLN00033 311 LTEEDFDFEEADIKSRGFGILDVGYRSKKEA-WAAGGSGILLRST 354 (398)
T ss_pred CcccccceeecccCCCCcceEEEEEcCCCcE-EEEECCCcEEEeC
Confidence 3 2222222 1235889999988764 5555778666553
No 459
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.75 E-value=9.7 Score=38.16 Aligned_cols=169 Identities=14% Similarity=0.118 Sum_probs=91.8
Q ss_pred CCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCcee-eeeccCcccccccCCCCCCceE-EEEECCCCCEEEEEeC
Q 004581 463 LPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELL-HTFTPCREEHDREIQPSEPPIT-KMFTSSDGQWLAAVNC 540 (744)
Q Consensus 463 ~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~-~l~~spdg~~las~~~ 540 (744)
+......+..+-..|||+.|..-+. ..+.|+++.+..+- +.+....+. .....|+ ++..-..|.-|.+++.
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg------~~~~~Vte~l~lL~Gg~SLLv~~~ 288 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPG------DSRHQVTEQLYLLSGGFSLLVVHE 288 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCC------chHHHHHHHHHHHhCceeEEEEcC
Confidence 3334457888899999999887765 67899988643321 111110000 0111222 2222335667788888
Q ss_pred CCcEEEE-ECC-CcceEEE-Ee--cCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCccccccc
Q 004581 541 FGDVYIF-NLE-IQRQHWF-IS--RLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQE 615 (744)
Q Consensus 541 dg~i~iw-d~~-~~~~~~~-~~--~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~ 615 (744)
||.|.-| |+. ++.++.. +. .....++..+.=-. +.+-+++-+..|++.++.-...++. + +..
T Consensus 289 dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~l---------L---~~~ 355 (733)
T COG4590 289 DGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLL---------L---FER 355 (733)
T ss_pred CCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcce---------e---hhh
Confidence 8888766 332 2221111 10 11112232222221 3344556666777776655444321 1 122
Q ss_pred CCCceEEEEeCCCCCCcEEEEEcCceEEEEeCCCCCCC
Q 004581 616 FPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGRPVDP 653 (744)
Q Consensus 616 ~~~~v~~i~fspdg~~~~~~~~~~~~~~~~~~~~~~~~ 653 (744)
.-..+.-++|||. .++++..+.+.+..+.++.+-|+
T Consensus 356 ~~~~~~~~~~Sp~--~~~Ll~e~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 356 AYQAPQLVAMSPN--QAYLLSEDQGKIRLAQLENRNPE 391 (733)
T ss_pred hhcCcceeeeCcc--cchheeecCCceEEEEecCCCCC
Confidence 2246778899996 56788888888888888665554
No 460
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.74 E-value=1.4 Score=27.76 Aligned_cols=31 Identities=16% Similarity=0.383 Sum_probs=25.0
Q ss_pred eCCCEEEEEeC-CCcEEEEEccCCceeeeecc
Q 004581 477 YDSSQLIIAGH-DRRIYVVDVSSSELLHTFTP 507 (744)
Q Consensus 477 pd~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~ 507 (744)
|++++|+++.. ++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 67888877664 78999999998888877765
No 461
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=89.69 E-value=27 Score=35.94 Aligned_cols=157 Identities=13% Similarity=0.090 Sum_probs=85.4
Q ss_pred CCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeec------CCeEEEEEeCCeEEEEEeeccCCccc
Q 004581 324 GVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFS------HTSLLLVQYSCRLDILSVRLENNVES 397 (744)
Q Consensus 324 ~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s------~~~~~l~~~~~~i~i~~~~~~~~~~~ 397 (744)
+.+.++.|+..|.+++|+................ ...+|..+... .+..+.+-....+.+|.+....+...
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~---l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ---LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEe---cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcc
Confidence 3458999999999999998543211111111111 11223332221 23345556788999999854443311
Q ss_pred CCCCCCCCCcceEEEEEecCCCCeEEEEEcC----C-CCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCccccccc
Q 004581 398 RSSSGGHASTSLLVQVKSKASRKIICSTISN----S-GMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAH 471 (744)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~----~-g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 471 (744)
.+. +-....+++.... .....++.-| . -.+|.+ +-||.+.+|+-+. ..+ ...++. .--..
T Consensus 113 ~g~---~~~L~~~yeh~l~--~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~-----~~f---~~~lp~-~llPg 178 (418)
T PF14727_consen 113 HGN---QYQLELIYEHSLQ--RTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES-----FAF---SRFLPD-FLLPG 178 (418)
T ss_pred cCc---EEEEEEEEEEecc--cceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc-----EEE---EEEcCC-CCCCc
Confidence 000 0111223333322 2233333333 2 245555 7999999998643 111 122333 22455
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEEcc
Q 004581 472 SMIFSYDSSQLIIAGHDRRIYVVDVS 497 (744)
Q Consensus 472 ~i~~spd~~~l~~~~~dg~i~v~d~~ 497 (744)
.+.|.+....+++++.+..+.-|..+
T Consensus 179 Pl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 179 PLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred CeEEeecCCEEEEecCceeEEEecHH
Confidence 67888999999999999889988763
No 462
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.63 E-value=19 Score=36.93 Aligned_cols=144 Identities=11% Similarity=0.062 Sum_probs=87.7
Q ss_pred eEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCC--------CEEEEEeCCCeEEEEEccC-CceEEEEE
Q 004581 99 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADG--------NMLYSGSSDGYIRSWDAKL-GYEIYRIT 169 (744)
Q Consensus 99 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg--------~~l~t~~~dg~i~vwd~~~-~~~~~~~~ 169 (744)
.+..|.....++--|++.|+.+ ....-|... -+.|.|+. +.|+-.+ +..|.-.|.+- |..+..-.
T Consensus 482 i~~dg~~~~kLykmDIErGkvv---eeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVV---EEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred EEecCCCcccceeeecccceee---eEeecCCcc--eeecCCchhHHhcCccceEEeec-ccceEEecccccCCceeeee
Confidence 3445555566667777766555 555556554 46787753 3444444 44555555432 32222211
Q ss_pred ecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEE
Q 004581 170 VGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK 249 (744)
Q Consensus 170 ~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~ 249 (744)
. ..........+..-...|+++.++..|.|++||--.-+....+.+....|..+..+.+|.++++.+. ..+.+-|
T Consensus 556 s----KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d 630 (776)
T COG5167 556 S----KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTD 630 (776)
T ss_pred e----hhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEe
Confidence 0 0011233344555556779999999999999996544444556677788999999999998877654 5677777
Q ss_pred cccC
Q 004581 250 ASCE 253 (744)
Q Consensus 250 ~~~~ 253 (744)
+...
T Consensus 631 ~~ik 634 (776)
T COG5167 631 VPIK 634 (776)
T ss_pred cccc
Confidence 6643
No 463
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.51 E-value=7.2 Score=39.85 Aligned_cols=92 Identities=7% Similarity=0.014 Sum_probs=55.7
Q ss_pred cccEEEEeeCCCEEEEEeCCCcEEEEE---------ccCCceeeeeccCcccccccCCCCCCceEEEEECCCC---CEEE
Q 004581 469 FAHSMIFSYDSSQLIIAGHDRRIYVVD---------VSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDG---QWLA 536 (744)
Q Consensus 469 ~v~~i~~spd~~~l~~~~~dg~i~v~d---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg---~~la 536 (744)
.|..+..++.|..++.++.+|.+.++= +++|+..-+........+--.....-.+..++|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 577788899999999999999554432 1334322111100000000001123345678899976 5777
Q ss_pred EEeCCCcEEEEECCCcceEEEEec
Q 004581 537 AVNCFGDVYIFNLEIQRQHWFISR 560 (744)
Q Consensus 537 s~~~dg~i~iwd~~~~~~~~~~~~ 560 (744)
.-+.|..|++||+......+..++
T Consensus 185 iL~sdnviRiy~lS~~telylqpg 208 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELYLQPG 208 (741)
T ss_pred EEecCcEEEEEecCCcchhhccCC
Confidence 778899999999987766655443
No 464
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.22 E-value=3 Score=37.57 Aligned_cols=51 Identities=14% Similarity=0.188 Sum_probs=40.7
Q ss_pred CeeEEecCCCeEEEEEcc--CCceeEEeeccCcceeEEeeccCCCccccccccc
Q 004581 6 GRLFSSSIDGSVSEWDLY--DLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNS 57 (744)
Q Consensus 6 ~~l~~~~~d~~i~iwd~~--~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~ 57 (744)
+.|+.+...+.|.+|++. ..+++.+|..- +.|..|+++..|+|+++-....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~ 81 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKN 81 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeec
Confidence 667777778899999988 45566777754 8999999999999998875443
No 465
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=89.01 E-value=13 Score=34.87 Aligned_cols=139 Identities=12% Similarity=0.086 Sum_probs=74.1
Q ss_pred CCCeEEEEEcCCCCEEEEEcC----CceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCC-cEE
Q 004581 418 SRKIICSTISNSGMLFAYSDH----VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR-RIY 492 (744)
Q Consensus 418 ~~~i~~~~~s~~g~~la~~~~----~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg-~i~ 492 (744)
.....+-++-+||++|.+|.+ ..+++|+... ....+-|......+... ..--+...-|||+.|+.|+... +..
T Consensus 66 d~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~-~~~~~~w~e~~~~m~~~-RWYpT~~~L~DG~vlIvGG~~~~t~E 143 (243)
T PF07250_consen 66 DTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCT-SDGTCDWTESPNDMQSG-RWYPTATTLPDGRVLIVGGSNNPTYE 143 (243)
T ss_pred CCcccCcCCCCCCCEEEeCCCCccccceEEEecCC-CCCCCCceECcccccCC-CccccceECCCCCEEEEeCcCCCccc
Confidence 344455568899999998533 4577877654 22233343332222222 2333444558999999998864 344
Q ss_pred EEEccC-CceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCC
Q 004581 493 VVDVSS-SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEG 563 (744)
Q Consensus 493 v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~ 563 (744)
+|.-.. ......+.-... ... ......--.+...|||++++.+..+ -.|||..+.+....++...+
T Consensus 144 ~~P~~~~~~~~~~~~~l~~-~~~--~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 144 FWPPKGPGPGPVTLPFLSQ-TSD--TLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTLPDLPG 210 (243)
T ss_pred ccCCccCCCCceeeecchh-hhc--cCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeCCCCCC
Confidence 444321 111111100000 000 0011112246678999999998765 46678888876666665543
No 466
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.64 E-value=3.6 Score=46.98 Aligned_cols=140 Identities=14% Similarity=0.152 Sum_probs=91.3
Q ss_pred ecCCeEEEEEecCCCceeEeecccCccCcEEEEEEe--------cCCCEEEEEeCCCeEEEEEccCCce-------EEEE
Q 004581 104 CDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWS--------ADGNMLYSGSSDGYIRSWDAKLGYE-------IYRI 168 (744)
Q Consensus 104 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s--------~dg~~l~t~~~dg~i~vwd~~~~~~-------~~~~ 168 (744)
+.|+.+.+|+++++... ..+.+-...|..|..- |.=++|+....--.|.++-+.-.+. ...+
T Consensus 96 TiDn~L~lWny~~~~e~---~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~ 172 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNEL---AEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSF 172 (1311)
T ss_pred EeCCeEEEEEcCCCCcc---ccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccce
Confidence 56889999999987776 6666666777776643 2223343333334566664422111 0111
Q ss_pred EecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCC----Cc---c-e----------------EEEee-ccccc
Q 004581 169 TVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSR----HG---T-L----------------LQAHS-FHKGD 223 (744)
Q Consensus 169 ~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~----~~---~-~----------------~~~~~-~h~~~ 223 (744)
..+ .....|.++....+|+++.++.|| .+|.+. .| + + +-.+. .+..+
T Consensus 173 ~i~------~dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dp 244 (1311)
T KOG1900|consen 173 KIS------VDGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDP 244 (1311)
T ss_pred eee------cCCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCc
Confidence 111 246778999988999988888898 444432 11 1 1 11123 56779
Q ss_pred eeEEEEcCCCCEEEeecCCCeEEEEEcccCc
Q 004581 224 VNALAAAPSHNRVFSTGSDGQVILYKASCES 254 (744)
Q Consensus 224 v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~ 254 (744)
|..+++...-+.+++-+..|+|.+|++....
T Consensus 245 I~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 245 IRQITIDNSRNILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred ceeeEeccccceeeeeccCceEEEEEccCCC
Confidence 9999999888889999999999999998854
No 467
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.54 E-value=0.037 Score=54.89 Aligned_cols=136 Identities=18% Similarity=0.307 Sum_probs=92.6
Q ss_pred eEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEE-eCCCeEEEEEccCCceEEEEEecCCCCCC
Q 004581 99 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSG-SSDGYIRSWDAKLGYEIYRITVGLGGLGS 177 (744)
Q Consensus 99 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 177 (744)
-++.++.+..+..||-. ++.. -.+ .-.+....++|..+|..++.. -..+.+.+||+.+.... .+..
T Consensus 48 nlavaca~tiv~~YD~a-gq~~---le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-qLE~------- 114 (615)
T KOG2247|consen 48 NLAVACANTIVIYYDKA-GQVI---LEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-QLES------- 114 (615)
T ss_pred ceehhhhhhHHHhhhhh-ccee---ccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-HHhc-------
Confidence 48889999999999975 3221 111 234566789999988876654 44679999999764322 1211
Q ss_pred CCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEE
Q 004581 178 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248 (744)
Q Consensus 178 ~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw 248 (744)
+....-.-+.|++.. .++.+...|.+.+++..+.+.+-..--|...++++++.+.+ +.+.++.|..+.+-
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLSVT 185 (615)
T ss_pred cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHHHHh
Confidence 111111226777777 78888889999999988777665555589999999999876 56666666655443
No 468
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.51 E-value=2 Score=27.00 Aligned_cols=41 Identities=20% Similarity=0.129 Sum_probs=29.4
Q ss_pred CCCCeeEEec-CCCeEEEEEccCCceeEEeeccCcceeEEeec
Q 004581 3 LPGGRLFSSS-IDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVA 44 (744)
Q Consensus 3 ~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~s 44 (744)
+++++|+++. .++.|.++|+.+++.+..+.. ...-..++|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEeC
Confidence 4567776655 588999999999998888775 3444455543
No 469
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=88.38 E-value=26 Score=34.19 Aligned_cols=235 Identities=9% Similarity=0.071 Sum_probs=104.2
Q ss_pred cEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCc
Q 004581 132 RVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHG 211 (744)
Q Consensus 132 ~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 211 (744)
...++.|..+ ..+++ +..+ +.+.....|+.=.++.... ........+....++.....+..|.|..= .+.|
T Consensus 63 ~l~~I~f~~~-~g~iv-G~~g-~ll~T~DgG~tW~~v~l~~-----~lpgs~~~i~~l~~~~~~l~~~~G~iy~T-~DgG 133 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIV-GEPG-LLLHTTDGGKTWERVPLSS-----KLPGSPFGITALGDGSAELAGDRGAIYRT-TDGG 133 (302)
T ss_dssp EEEEEEEETT-EEEEE-EETT-EEEEESSTTSS-EE----T-----T-SS-EEEEEEEETTEEEEEETT--EEEE-SSTT
T ss_pred eEEEEEecCC-ceEEE-cCCc-eEEEecCCCCCcEEeecCC-----CCCCCeeEEEEcCCCcEEEEcCCCcEEEe-CCCC
Confidence 4677888643 44444 4444 3444444555544443210 12233344555556644434445554332 1223
Q ss_pred ce-EEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeec
Q 004581 212 TL-LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAV 290 (744)
Q Consensus 212 ~~-~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 290 (744)
+. ......-.+.+..+..++||++++++..-....-|+-... .|.+. -+.-+..|.++.|.
T Consensus 134 ~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~---------------~w~~~--~r~~~~riq~~gf~- 195 (302)
T PF14870_consen 134 KTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT---------------TWQPH--NRNSSRRIQSMGFS- 195 (302)
T ss_dssp SSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S---------------S-EEE--E--SSS-EEEEEE--
T ss_pred CCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCc---------------cceEE--ccCccceehhceec-
Confidence 22 2333444577889999999998888866555567765432 24332 23356778999997
Q ss_pred cCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEe-cCccCCCCCcccCCCCCCCcccccccee
Q 004581 291 PISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYC-ANEFTKFSPHEICPAPQRVPIHLVHNTI 369 (744)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 369 (744)
|++. |......|.|++=+ .......... ..+.......+..++
T Consensus 196 --------~~~~-------------------------lw~~~~Gg~~~~s~~~~~~~~w~~~---~~~~~~~~~~~ld~a 239 (302)
T PF14870_consen 196 --------PDGN-------------------------LWMLARGGQIQFSDDPDDGETWSEP---IIPIKTNGYGILDLA 239 (302)
T ss_dssp --------TTS--------------------------EEEEETTTEEEEEE-TTEEEEE------B-TTSS--S-EEEEE
T ss_pred --------CCCC-------------------------EEEEeCCcEEEEccCCCCccccccc---cCCcccCceeeEEEE
Confidence 5543 33344677777766 2221111110 011111223456788
Q ss_pred ecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEe--cCCCCeEEEEEcCCCCEEEEEcCCceEEE
Q 004581 370 FSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKS--KASRKIICSTISNSGMLFAYSDHVKPSLF 444 (744)
Q Consensus 370 ~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~g~~la~~~~~~v~l~ 444 (744)
+.+++.+.+.+....-+...+.+. .-.+... .-...+..+.|.++.+-++.+.++.+--|
T Consensus 240 ~~~~~~~wa~gg~G~l~~S~DgGk---------------tW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 240 YRPPNEIWAVGGSGTLLVSTDGGK---------------TWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp ESSSS-EEEEESTT-EEEESSTTS---------------S-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred ecCCCCEEEEeCCccEEEeCCCCc---------------cceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 888777666554432222222111 1111111 11355777778877788888888766544
No 470
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=87.47 E-value=16 Score=38.01 Aligned_cols=112 Identities=8% Similarity=0.095 Sum_probs=62.3
Q ss_pred cccccEEEEeeCCCEEEEEeCCCcEEEEEccCCce--eeeeccCcccccccCCCCCCceEEEEECCCC------CEEEEE
Q 004581 467 LQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSEL--LHTFTPCREEHDREIQPSEPPITKMFTSSDG------QWLAAV 538 (744)
Q Consensus 467 ~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg------~~las~ 538 (744)
+...+.|+|.|||++|++--..|.|++++..++.. +..+... ...........|+++|+- ++|...
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v------~~~~ge~GLlglal~PdF~~~~~n~~lYvs 102 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEI------VNDAQHNGLLGLALHPDFMQEKGNPYVYIS 102 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCce------eccCCCCceeeEEECCCccccCCCcEEEEE
Confidence 44788999999998877665579999998654432 2222110 000025678899999884 234333
Q ss_pred e----------CCCcEEEEECCCc--c---eEEEE---ecCCCCceeEEeecCCCCCeEEEEecC
Q 004581 539 N----------CFGDVYIFNLEIQ--R---QHWFI---SRLEGASVTAAGFPPQNNNVLIITTSS 585 (744)
Q Consensus 539 ~----------~dg~i~iwd~~~~--~---~~~~~---~~~~~~~v~~l~~sp~~~~~l~~~~~d 585 (744)
. ....|.-|.+... . ....+ +......-..|+|.| |+.++++.++.
T Consensus 103 yt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgP-DG~LYVs~GD~ 166 (454)
T TIGR03606 103 YTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGP-DGKIYYTIGEQ 166 (454)
T ss_pred EeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECC-CCcEEEEECCC
Confidence 1 1234555555421 1 11112 111112345788999 88866665544
No 471
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=87.39 E-value=35 Score=34.43 Aligned_cols=198 Identities=18% Similarity=0.213 Sum_probs=106.4
Q ss_pred CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEe----cCCCE--EEEEeC-C---CeEEEEEccCC-ceEE
Q 004581 98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWS----ADGNM--LYSGSS-D---GYIRSWDAKLG-YEIY 166 (744)
Q Consensus 98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s----~dg~~--l~t~~~-d---g~i~vwd~~~~-~~~~ 166 (744)
.+++....++-+.+||+. ++.+. .+. .++++.+..- -+|+. |+.++. + .+|++|.+... ..+.
T Consensus 69 SlIigTdK~~GL~VYdL~-Gk~lq---~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLD-GKELQ---SLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp -EEEEEETTTEEEEEETT-S-EEE---EE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred ceEEEEeCCCCEEEEcCC-CcEEE---eec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 366666778889999997 66663 332 2344444332 13443 444442 2 47999977531 2233
Q ss_pred EEEecCCCCCCCCceeEEEEEEe--c-CC--eEEEEcCCCCEEEEeCC---Cc----ceEEEeeccccceeEEEEcCCCC
Q 004581 167 RITVGLGGLGSGPELCIWSLLSL--R-CG--TLVSADSTGSVQFWDSR---HG----TLLQAHSFHKGDVNALAAAPSHN 234 (744)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~~~~~~--~-~~--~l~s~~~dg~i~vwd~~---~~----~~~~~~~~h~~~v~~l~~~~~~~ 234 (744)
.+........ .....++.+|.- + +| +.+....+|.+.-|.+. .+ ++++.+.. ...+..++......
T Consensus 143 ~v~~~~~p~~-~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g 220 (381)
T PF02333_consen 143 DVTDPAAPIA-TDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETG 220 (381)
T ss_dssp E-CBTTC-EE--SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTT
T ss_pred EcCCCCcccc-cccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccC
Confidence 3321100000 112235666653 3 34 67778888988877664 23 45677765 45788899998888
Q ss_pred EEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeee--eeccCcceeeeeeccCCCCCCCCcccccccCCCCCC
Q 004581 235 RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSV--RAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKP 312 (744)
Q Consensus 235 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (744)
+|+.+-.+.-|.-|+.+.... ..-..+... .....+|..|++... .++
T Consensus 221 ~LYvgEE~~GIW~y~Aep~~~------------~~~~~v~~~~g~~l~aDvEGlaly~~-------~~g----------- 270 (381)
T PF02333_consen 221 RLYVGEEDVGIWRYDAEPEGG------------NDRTLVASADGDGLVADVEGLALYYG-------SDG----------- 270 (381)
T ss_dssp EEEEEETTTEEEEEESSCCC-------------S--EEEEEBSSSSB-S-EEEEEEEE--------CCC-----------
T ss_pred CEEEecCccEEEEEecCCCCC------------CcceeeecccccccccCccceEEEec-------CCC-----------
Confidence 999998887777776654321 001112222 235667888887410 111
Q ss_pred ccccccccccCCCcEEEEecCCCeEEEEecCc
Q 004581 313 IDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 344 (744)
Q Consensus 313 ~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~ 344 (744)
.+-+|+|.-.+++..+|+...
T Consensus 271 -----------~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 271 -----------KGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp ------------EEEEEEEGGGTEEEEEESST
T ss_pred -----------CeEEEEEcCCCCeEEEEecCC
Confidence 111566666777899999864
No 472
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.38 E-value=15 Score=30.31 Aligned_cols=107 Identities=22% Similarity=0.303 Sum_probs=64.8
Q ss_pred EEECCCCCEEEEEeCCCcEEEEECCCcc--------eEEEEecCCCCceeEEe---ecCC-CCCeEEEEecCCeEEEEEc
Q 004581 526 MFTSSDGQWLAAVNCFGDVYIFNLEIQR--------QHWFISRLEGASVTAAG---FPPQ-NNNVLIITTSSNQVYVFDV 593 (744)
Q Consensus 526 l~~spdg~~las~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~v~~l~---~sp~-~~~~l~~~~~d~~v~vwd~ 593 (744)
-.|......|++++.-|+|.|++..... ....+. . +..|++|+ |.|+ +.+.|++|+ ..++..||+
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-i-n~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-I-NQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-C-CCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 3565666688999999999999875332 223332 2 24677775 4332 345555555 567999999
Q ss_pred CCCccccccccccCCcccccccCCCceEEEEeCCCCC--CcEEEEEcCceEEEEeC
Q 004581 594 EAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPS--SSSVIIYSARAMCVIDF 647 (744)
Q Consensus 594 ~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~--~~~~~~~~~~~~~~~~~ 647 (744)
+...-. + ++...+.+..|.+-.-|. ...+++-+.-.+.-+|.
T Consensus 81 ~~N~d~---------F---yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~ 124 (136)
T PF14781_consen 81 ENNSDL---------F---YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDY 124 (136)
T ss_pred ccCchh---------h---hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCC
Confidence 877421 1 334457777777743322 34455555555777775
No 473
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=87.12 E-value=41 Score=35.03 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=24.1
Q ss_pred ccceeEEEEcCCCCEEEeecCCCeEEEEEccc
Q 004581 221 KGDVNALAAAPSHNRVFSTGSDGQVILYKASC 252 (744)
Q Consensus 221 ~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~ 252 (744)
-..-..|+|.|||+.|++--..|.|++++...
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~ 60 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPET 60 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCC
Confidence 45568899999997666654469999987554
No 474
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=86.83 E-value=62 Score=36.77 Aligned_cols=63 Identities=17% Similarity=0.176 Sum_probs=44.6
Q ss_pred CeEEEEcCCCCEEEEeCCCcceEEEee---ccccceeEEEEcCCC------CEEEeecCCCeEEEEEcccCc
Q 004581 192 GTLVSADSTGSVQFWDSRHGTLLQAHS---FHKGDVNALAAAPSH------NRVFSTGSDGQVILYKASCES 254 (744)
Q Consensus 192 ~~l~s~~~dg~i~vwd~~~~~~~~~~~---~h~~~v~~l~~~~~~------~~l~~~~~dg~i~iw~~~~~~ 254 (744)
.+++.+-+.|.+..+.......+..+. .-...|.|+++.++. ++++.++.|+.+++..+....
T Consensus 550 ~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d 621 (1205)
T KOG1898|consen 550 RQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSD 621 (1205)
T ss_pred eEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcc
Confidence 367777777887777665433333332 335689999998865 578999999999999988543
No 475
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=86.71 E-value=34 Score=33.59 Aligned_cols=124 Identities=15% Similarity=0.221 Sum_probs=82.2
Q ss_pred cccEEEEeeCCCEEEEE------------------eCCCcEEEEEccCCceeeeeccCcccccc----------------
Q 004581 469 FAHSMIFSYDSSQLIIA------------------GHDRRIYVVDVSSSELLHTFTPCREEHDR---------------- 514 (744)
Q Consensus 469 ~v~~i~~spd~~~l~~~------------------~~dg~i~v~d~~~~~~~~~~~~~~~~~~~---------------- 514 (744)
....+.+.++|..|++. -.|+.+.-.|+++++.+..+.........
T Consensus 58 d~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~ 137 (299)
T PF14269_consen 58 DHHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSS 137 (299)
T ss_pred CccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCC
Confidence 45666777888877732 12445667788889888776542211100
Q ss_pred cCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCc----eeEEeecCCCCCeEEEEecCCeEEE
Q 004581 515 EIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGAS----VTAAGFPPQNNNVLIITTSSNQVYV 590 (744)
Q Consensus 515 ~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~----v~~l~~sp~~~~~l~~~~~d~~v~v 590 (744)
..+..--.|+++...++|.+|+++-.-..|.+.|-.+++.++.+.+...+. -...+|-. |.+++-....++.|.+
T Consensus 138 ~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QH-dar~~~~~~~~~~Isl 216 (299)
T PF14269_consen 138 SFPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQH-DARFLNESNDDGTISL 216 (299)
T ss_pred CCCCCccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeecc-CCEEeccCCCCCEEEE
Confidence 011122347888988999999999888999999999999999986542211 12244544 6666666677889999
Q ss_pred EEc
Q 004581 591 FDV 593 (744)
Q Consensus 591 wd~ 593 (744)
||=
T Consensus 217 FDN 219 (299)
T PF14269_consen 217 FDN 219 (299)
T ss_pred EcC
Confidence 985
No 476
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=86.51 E-value=15 Score=39.35 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=49.4
Q ss_pred CceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEccc
Q 004581 179 PELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 252 (744)
Q Consensus 179 ~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~ 252 (744)
....+.++.-+|.+ .++++..||.|++|+....+...... ...+-..+.|...| |+++..|..+.-|.-+.
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~dg 84 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKEDG 84 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeeccC
Confidence 44567778888988 79999999999999986544322221 12334456676555 77888888888887654
No 477
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.31 E-value=6.5 Score=34.86 Aligned_cols=31 Identities=26% Similarity=0.267 Sum_probs=25.8
Q ss_pred cceeEEEEcCCC------CEEEeecCCCeEEEEEccc
Q 004581 222 GDVNALAAAPSH------NRVFSTGSDGQVILYKASC 252 (744)
Q Consensus 222 ~~v~~l~~~~~~------~~l~~~~~dg~i~iw~~~~ 252 (744)
..|..++|||.| -.|++.+.++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478999999954 4688889999999998765
No 478
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=86.23 E-value=66 Score=36.52 Aligned_cols=197 Identities=9% Similarity=0.045 Sum_probs=0.0
Q ss_pred cCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEE---------ecCCCCeEEEEEcCCCCEEEE-EcC--
Q 004581 371 SHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK---------SKASRKIICSTISNSGMLFAY-SDH-- 438 (744)
Q Consensus 371 s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~~~~s~~g~~la~-~~~-- 438 (744)
...+.+.++.+|.+++|-..... .+.+.. ...--.-.+++++.+|+.+++ +.+
T Consensus 61 ~K~A~i~Vt~nG~l~l~yQ~~~~---------------~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~ 125 (753)
T PF11635_consen 61 AKSACIAVTRNGLLKLWYQKPDG---------------QWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSL 125 (753)
T ss_pred CceEEEEEecCCeEEEEEEcCCC---------------ccceeehhhhccccccccceeeceeeecCCCCEEEEEEcccc
Q ss_pred -CceEEEEeecCCCCCceEEeeeccCCc-------------------------------ccccccEEEEee-------CC
Q 004581 439 -VKPSLFELKKGKVGQGEWIINKRQLPR-------------------------------KLQFAHSMIFSY-------DS 479 (744)
Q Consensus 439 -~~v~l~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~v~~i~~sp-------d~ 479 (744)
+.|++|.+.- -|+.+...... ....++.+.|-+ .-
T Consensus 126 s~~l~~yrv~I------~W~~~~~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p 199 (753)
T PF11635_consen 126 SKQLRFYRVQI------DWNAKPQQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAP 199 (753)
T ss_pred CCceEEEEEEE------eccCcCccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCC
Q ss_pred CEEEEEeCCC----cEEEEEcc-CCceeeeeccCcccccccCC--------------CCCCceEEEEECCCCCEEEEEeC
Q 004581 480 SQLIIAGHDR----RIYVVDVS-SSELLHTFTPCREEHDREIQ--------------PSEPPITKMFTSSDGQWLAAVNC 540 (744)
Q Consensus 480 ~~l~~~~~dg----~i~v~d~~-~~~~~~~~~~~~~~~~~~~~--------------~~~~~i~~l~~spdg~~las~~~ 540 (744)
..|++.+..+ .|.-|.+. ..+.++..-........... ...+.|.+++...-+.+++.+-.
T Consensus 200 ~Ili~~~~~~~~~SiI~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~ 279 (753)
T PF11635_consen 200 EILIVYSSPNTPSSIIERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFS 279 (753)
T ss_pred eEEEEEEcCCCCCcEEEEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEc
Q ss_pred CCcEEEEECCCcceEEEE----ecCCC--------------CceeEEeecCCCCCeEEEEecCCeEE
Q 004581 541 FGDVYIFNLEIQRQHWFI----SRLEG--------------ASVTAAGFPPQNNNVLIITTSSNQVY 589 (744)
Q Consensus 541 dg~i~iwd~~~~~~~~~~----~~~~~--------------~~v~~l~~sp~~~~~l~~~~~d~~v~ 589 (744)
||+|.++|-.+.+..... ..... ..+..++||| ++..++.-..+|.+.
T Consensus 280 DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSP-t~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 280 DGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSP-TMCSLVQIDEDGKTK 345 (753)
T ss_pred CCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECc-ccceEEEEecCCCce
No 479
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=85.85 E-value=52 Score=34.96 Aligned_cols=111 Identities=18% Similarity=0.047 Sum_probs=57.2
Q ss_pred CeEEEEEecCCCceeEeecccCcc-CcEEEEEEecCCCEEEEEe--------------CCCeEEEEEccCCceEEEEEec
Q 004581 107 GCVRIYRITDSDELIYHRSLPRVS-GRVLSVTWSADGNMLYSGS--------------SDGYIRSWDAKLGYEIYRITVG 171 (744)
Q Consensus 107 g~i~iwd~~~~~~~~~~~~~~~h~-~~V~~~~~s~dg~~l~t~~--------------~dg~i~vwd~~~~~~~~~~~~~ 171 (744)
+.++.+|+. |+.+. ...+.+.. .-=..+.+-|+|++|+.+. .| .|..+| .+|+.+..+...
T Consensus 167 ~~~~e~D~~-G~v~~-~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D-~Ivevd-~tG~vv~~wd~~ 242 (477)
T PF05935_consen 167 NRLYEIDLL-GKVIW-EYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVED-VIVEVD-PTGEVVWEWDFF 242 (477)
T ss_dssp TEEEEE-TT---EEE-EEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S--EEEEE--TTS-EEEEEEGG
T ss_pred CceEEEcCC-CCEEE-eeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecC-EEEEEC-CCCCEEEEEehH
Confidence 677788875 44322 23333311 1123466789999988877 23 577778 888888776532
Q ss_pred C--CC--C---------------CCCCceeEEEEEEec-CC-eEEEEcCCCCEEEEeCCCcceEEEeeccc
Q 004581 172 L--GG--L---------------GSGPELCIWSLLSLR-CG-TLVSADSTGSVQFWDSRHGTLLQAHSFHK 221 (744)
Q Consensus 172 ~--~~--~---------------~~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~ 221 (744)
. .. . ....=..+.++.+.+ ++ .++|+-....|...|.++++....+..|.
T Consensus 243 d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 243 DHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp GTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred HhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 1 00 0 001114678889988 45 55555556688888988888887776554
No 480
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=85.24 E-value=45 Score=33.67 Aligned_cols=189 Identities=16% Similarity=0.168 Sum_probs=106.7
Q ss_pred CCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeecc----CCCccccccccccccCCccccCCCCCCCCCcCccC
Q 004581 5 GGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAP----SNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSES 80 (744)
Q Consensus 5 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (744)
..+++....++-+.+||+ .|+.++.+. .+..+.+.+-- .|+.+
T Consensus 68 kSlIigTdK~~GL~VYdL-~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~v------------------------------ 114 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDL-DGKELQSLP--VGRPNNVDVRYGFPLNGKTV------------------------------ 114 (381)
T ss_dssp G-EEEEEETTTEEEEEET-TS-EEEEE---SS-EEEEEEEEEEEETTEEE------------------------------
T ss_pred cceEEEEeCCCCEEEEcC-CCcEEEeec--CCCcceeeeecceecCCceE------------------------------
Confidence 346777778889999997 557777664 34555544432 23211
Q ss_pred CCCCCcccccccccccCCeEEEEec-C---CeEEEEEecC-CCceeEeec----ccCccCcEEEEEEe--c-CCC-EEEE
Q 004581 81 ENDSDSDELHEQSVVEDRRVALACD-D---GCVRIYRITD-SDELIYHRS----LPRVSGRVLSVTWS--A-DGN-MLYS 147 (744)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~la~~~~-d---g~i~iwd~~~-~~~~~~~~~----~~~h~~~V~~~~~s--~-dg~-~l~t 147 (744)
-||+++. + ..|++|.+.. ...+..... +..-...+..+|+- + +|. +++.
T Consensus 115 ------------------Dlavas~R~~g~n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v 176 (381)
T PF02333_consen 115 ------------------DLAVASDRSDGRNSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFV 176 (381)
T ss_dssp ------------------EEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEE
T ss_pred ------------------EEEEEecCcCCCCeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEE
Confidence 2444443 2 5799999973 233422111 11112346777763 3 455 5556
Q ss_pred EeCCCeEEEEEcc---CC----ceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCC-----cceE
Q 004581 148 GSSDGYIRSWDAK---LG----YEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH-----GTLL 214 (744)
Q Consensus 148 ~~~dg~i~vwd~~---~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~-----~~~~ 214 (744)
...+|.+..|.+. .| +.++++.. ...+..+...... +|+.+-++.-|.-|+.+. ++.+
T Consensus 177 ~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---------~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v 247 (381)
T PF02333_consen 177 NGKDGRVEQYELTDDGDGKVSATLVREFKV---------GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLV 247 (381)
T ss_dssp EETTSEEEEEEEEE-TTSSEEEEEEEEEE----------SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEE
T ss_pred ecCCceEEEEEEEeCCCCcEeeEEEEEecC---------CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceee
Confidence 7778988888774 23 35666663 3466677666654 899999998888888762 2333
Q ss_pred EEeec--cccceeEEEEcC--CC-CEEEe-ecCCCeEEEEEcccC
Q 004581 215 QAHSF--HKGDVNALAAAP--SH-NRVFS-TGSDGQVILYKASCE 253 (744)
Q Consensus 215 ~~~~~--h~~~v~~l~~~~--~~-~~l~~-~~~dg~i~iw~~~~~ 253 (744)
....+ ....|-.|++-. ++ .+|++ .-.+++..+|+....
T Consensus 248 ~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 248 ASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred ecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 33322 356788888743 33 34554 444889999998753
No 481
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=84.72 E-value=88 Score=36.61 Aligned_cols=70 Identities=16% Similarity=0.188 Sum_probs=36.9
Q ss_pred cccEEEEeeCCCEEEEEeCCCcEE-EEEccCCceeeeeccCccc---------------ccccCCCCCCceEEEEECCCC
Q 004581 469 FAHSMIFSYDSSQLIIAGHDRRIY-VVDVSSSELLHTFTPCREE---------------HDREIQPSEPPITKMFTSSDG 532 (744)
Q Consensus 469 ~v~~i~~spd~~~l~~~~~dg~i~-v~d~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~i~~l~~spdg 532 (744)
...+|+++++|.+.++-+....|. |-.+.+...+..+.+.... .--...+|-..+.++|.+|||
T Consensus 594 ~~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg 673 (1899)
T KOG4659|consen 594 IQRDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDG 673 (1899)
T ss_pred hhhceeecCCceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCC
Confidence 447889999888766654432221 1112222233333321100 000123566778899999999
Q ss_pred CEEEEE
Q 004581 533 QWLAAV 538 (744)
Q Consensus 533 ~~las~ 538 (744)
...++-
T Consensus 674 ~v~IAD 679 (1899)
T KOG4659|consen 674 DVIIAD 679 (1899)
T ss_pred cEEEec
Confidence 876654
No 482
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=84.19 E-value=48 Score=33.11 Aligned_cols=107 Identities=10% Similarity=0.048 Sum_probs=49.0
Q ss_pred CCCEEEEEeCC-----CeEEEEEccCCceE--EEEEecCCCCCCCCceeEEEEEEecCCeEEEEcC-----CCCEEEEeC
Q 004581 141 DGNMLYSGSSD-----GYIRSWDAKLGYEI--YRITVGLGGLGSGPELCIWSLLSLRCGTLVSADS-----TGSVQFWDS 208 (744)
Q Consensus 141 dg~~l~t~~~d-----g~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~-----dg~i~vwd~ 208 (744)
++.+++.|+.+ ..+..+|+.+.+-. .....++. ....-.+++...+..++.|+. ...+..||+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp-----~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~ 146 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLP-----FTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNL 146 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCC-----cCccCceEEEECCEEEEEeCcCCCccCceEEEEcC
Confidence 55666777654 35677777665531 11111110 111111222333334555553 245888898
Q ss_pred CCcceEEEeecc-ccceeEEEEcCCCCEEEeecCCCe----EEEEEccc
Q 004581 209 RHGTLLQAHSFH-KGDVNALAAAPSHNRVFSTGSDGQ----VILYKASC 252 (744)
Q Consensus 209 ~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~~~~~dg~----i~iw~~~~ 252 (744)
.+.+....-... .......+...+++..+.|+.++. +..||..+
T Consensus 147 ~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 147 ETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred CCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 876543221111 112222223335666667776542 34566554
No 483
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=84.15 E-value=42 Score=32.43 Aligned_cols=97 Identities=12% Similarity=0.134 Sum_probs=60.6
Q ss_pred CcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEe------CCCcEEEEECCCcceEEEEecCC
Q 004581 489 RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN------CFGDVYIFNLEIQRQHWFISRLE 562 (744)
Q Consensus 489 g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~------~dg~i~iwd~~~~~~~~~~~~~~ 562 (744)
..|++||..+.+-...-.+ -.+.|++|.|..+.+.++.|. ....+..||+++..-. .+....
T Consensus 16 ~~lC~yd~~~~qW~~~g~~-----------i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~ 83 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNG-----------ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGS 83 (281)
T ss_pred CEEEEEECCCCEeecCCCC-----------ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcc
Confidence 3589999876655443333 577899999997878888775 3457889999877532 232211
Q ss_pred ----CCceeEEeecCCCCCeEE-EEe-cCCeEEEEEcCCCc
Q 004581 563 ----GASVTAAGFPPQNNNVLI-ITT-SSNQVYVFDVEAKQ 597 (744)
Q Consensus 563 ----~~~v~~l~~sp~~~~~l~-~~~-~d~~v~vwd~~~~~ 597 (744)
.++|+.+.+...|...+. .|. .++.-++...+..+
T Consensus 84 s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 84 SNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred cccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 267888888553554444 333 44544444445544
No 484
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.07 E-value=16 Score=37.56 Aligned_cols=85 Identities=15% Similarity=0.029 Sum_probs=56.7
Q ss_pred cEEEEEEecCCCEEEEEeCCCeEEEEE---------ccCCceEEEEEec-C--CCCCCCCceeEEEEEEecCC----eEE
Q 004581 132 RVLSVTWSADGNMLYSGSSDGYIRSWD---------AKLGYEIYRITVG-L--GGLGSGPELCIWSLLSLRCG----TLV 195 (744)
Q Consensus 132 ~V~~~~~s~dg~~l~t~~~dg~i~vwd---------~~~~~~~~~~~~~-~--~~~~~~~~~~v~~~~~~~~~----~l~ 195 (744)
.|..+..++.|..++-++.+|.+.++= ++.|+..-..+.- . .-..+...-.+..++|+|+. .|+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 477888899999999999998766542 2445433322211 1 11112234456678899976 788
Q ss_pred EEcCCCCEEEEeCCCcceEEE
Q 004581 196 SADSTGSVQFWDSRHGTLLQA 216 (744)
Q Consensus 196 s~~~dg~i~vwd~~~~~~~~~ 216 (744)
.-.+|+.|++||....+.+..
T Consensus 185 iL~sdnviRiy~lS~~telyl 205 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELYL 205 (741)
T ss_pred EEecCcEEEEEecCCcchhhc
Confidence 888999999999987665533
No 485
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=84.02 E-value=55 Score=33.72 Aligned_cols=292 Identities=10% Similarity=0.055 Sum_probs=137.0
Q ss_pred eEEEEcCCCCEEEEeCCCcc-----eEEEeeccccceeEEEEcC-----CCCEEEeecCCCeEEEEEcccCcCCCCCCCC
Q 004581 193 TLVSADSTGSVQFWDSRHGT-----LLQAHSFHKGDVNALAAAP-----SHNRVFSTGSDGQVILYKASCESIGPNDGLS 262 (744)
Q Consensus 193 ~l~s~~~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~l~~~~-----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 262 (744)
.|+.|+..|.++||+...+. .+-+.+ -..+|..+.... +...|++ =.-..+.+|.+......
T Consensus 39 ~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~------ 110 (418)
T PF14727_consen 39 KIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGT------ 110 (418)
T ss_pred EEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCC------
Confidence 89999999999999986533 222222 256888887643 2234444 35677888888443210
Q ss_pred cccccceEEEEeeeeeccCc--ceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEE
Q 004581 263 SSEVIKKWIYVGSVRAHTHD--VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAY 340 (744)
Q Consensus 263 ~~~~~~~~~~~~~~~~h~~~--v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~ 340 (744)
......+. +.....|.-. ...+++- +=|. ..+.+.+..-+.||.+.+|
T Consensus 111 -~~~g~~~~-L~~~yeh~l~~~a~nm~~G---------~Fgg-------------------~~~~~~IcVQS~DG~L~~f 160 (418)
T PF14727_consen 111 -VEHGNQYQ-LELIYEHSLQRTAYNMCCG---------PFGG-------------------VKGRDFICVQSMDGSLSFF 160 (418)
T ss_pred -cccCcEEE-EEEEEEEecccceeEEEEE---------ECCC-------------------CCCceEEEEEecCceEEEE
Confidence 01112222 2333333322 2223221 1111 1123589999999999999
Q ss_pred ecCccCCCCCcccCCCCCCCccccccceeecCCe--EEEEEeCCeEEEEEeeccCCcccCCC--------CCCCCCcceE
Q 004581 341 CANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTS--LLLVQYSCRLDILSVRLENNVESRSS--------SGGHASTSLL 410 (744)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~i~i~~~~~~~~~~~~~~--------~~~~~~~~~~ 410 (744)
+-+...-....... -....+.+.+.. .++++.+..+..|+...-........ ....+....-
T Consensus 161 eqe~~~f~~~lp~~--------llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~d 232 (418)
T PF14727_consen 161 EQESFAFSRFLPDF--------LLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPD 232 (418)
T ss_pred eCCcEEEEEEcCCC--------CCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccce
Confidence 98764311111111 111133444433 33333344677776543222211100 0011112222
Q ss_pred EEEEecCCCCeEEE---EEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEee----CC---C
Q 004581 411 VQVKSKASRKIICS---TISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY----DS---S 480 (744)
Q Consensus 411 ~~~~~~~~~~i~~~---~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp----d~---~ 480 (744)
..+..+ +.+..+ .++..-..+++=....+.+.+. .+...| .++.+.. +.+...|.. ++ .
T Consensus 233 Ws~nlG--E~~l~i~v~~~~~~~~~IvvLger~Lf~l~~----~G~l~~-~krLd~~----p~~~~~Y~~~~~~~~~~~~ 301 (418)
T PF14727_consen 233 WSFNLG--EQALDIQVVRFSSSESDIVVLGERSLFCLKD----NGSLRF-QKRLDYN----PSCFCPYRVPWYNEPSTRL 301 (418)
T ss_pred eEEECC--ceeEEEEEEEcCCCCceEEEEecceEEEEcC----CCeEEE-EEecCCc----eeeEEEEEeecccCCCCce
Confidence 233322 223322 2332333343333334444332 122111 1111111 222222221 22 2
Q ss_pred EEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCce--EEEEECCCCCEEEEEeCCCcEEEEECCCcce
Q 004581 481 QLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPI--TKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ 554 (744)
Q Consensus 481 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~l~~spdg~~las~~~dg~i~iwd~~~~~~ 554 (744)
.+++++.++++.||. +.+++..-.. ...+| .-..|..-...|++-+.+|.+.+--+-|...
T Consensus 302 ~llV~t~t~~LlVy~--d~~L~WsA~l-----------~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs 364 (418)
T PF14727_consen 302 NLLVGTHTGTLLVYE--DTTLVWSAQL-----------PHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPS 364 (418)
T ss_pred EEEEEecCCeEEEEe--CCeEEEecCC-----------CCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCc
Confidence 488889999999997 3444444332 12222 2223333445788888899888877766543
No 486
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=83.85 E-value=68 Score=34.62 Aligned_cols=118 Identities=14% Similarity=0.108 Sum_probs=70.0
Q ss_pred cccEEEEeeCCCEEEEEeC-----CCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCC-
Q 004581 469 FAHSMIFSYDSSQLIIAGH-----DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG- 542 (744)
Q Consensus 469 ~v~~i~~spd~~~l~~~~~-----dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg- 542 (744)
.+-.++.|||.+++|.+-. .=++++.|+.+|+.+.... .+....++|.+|++.|.-...|-
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i-------------~~~~~~~~Wa~d~~~lfYt~~d~~ 196 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEI-------------TNTSGSFAWAADGKTLFYTRLDEN 196 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhh-------------cccccceEEecCCCeEEEEEEcCC
Confidence 5667888999999987633 2378999999887654322 33466889999999887665443
Q ss_pred ----cEEEEECCC--cceEEEEecCCCCceeEEeecCCCCCeEEEEecC---CeEEEEEcCCCcccc
Q 004581 543 ----DVYIFNLEI--QRQHWFISRLEGASVTAAGFPPQNNNVLIITTSS---NQVYVFDVEAKQLGE 600 (744)
Q Consensus 543 ----~i~iwd~~~--~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d---~~v~vwd~~~~~~~~ 600 (744)
.|.-..+.+ ......+......--.++.=+. +.++|+....| +.+++.+.+..+.++
T Consensus 197 ~rp~kv~~h~~gt~~~~d~lvyeE~d~~f~~~v~~s~-s~~yi~i~~~~~~tsE~~ll~a~~p~~~p 262 (682)
T COG1770 197 HRPDKVWRHRLGTPGSSDELVYEEKDDRFFLSVGRSR-SEAYIVISLGSHITSEVRLLDADDPEAEP 262 (682)
T ss_pred CCcceEEEEecCCCCCcceEEEEcCCCcEEEEeeecc-CCceEEEEcCCCcceeEEEEecCCCCCce
Confidence 233333443 2222222211112223333344 56777766544 377777877766543
No 487
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.79 E-value=9.6 Score=33.79 Aligned_cols=33 Identities=18% Similarity=0.406 Sum_probs=26.8
Q ss_pred CceeEEeecC-----CCCCeEEEEecCCeEEEEEcCCC
Q 004581 564 ASVTAAGFPP-----QNNNVLIITTSSNQVYVFDVEAK 596 (744)
Q Consensus 564 ~~v~~l~~sp-----~~~~~l~~~~~d~~v~vwd~~~~ 596 (744)
..+.+++||| ..+.+|++.+.++.|.||.-...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 4789999999 22467899999999999987644
No 488
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=83.04 E-value=5.1 Score=24.72 Aligned_cols=29 Identities=21% Similarity=0.160 Sum_probs=20.3
Q ss_pred CCCceEEEEECCCCCEEEEEeC-C--CcEEEE
Q 004581 519 SEPPITKMFTSSDGQWLAAVNC-F--GDVYIF 547 (744)
Q Consensus 519 ~~~~i~~l~~spdg~~las~~~-d--g~i~iw 547 (744)
....-....|||||++|+.++. + |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4556788999999999887654 4 555555
No 489
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=82.69 E-value=55 Score=32.68 Aligned_cols=111 Identities=13% Similarity=0.064 Sum_probs=51.0
Q ss_pred ccCCeEEEEecC-----CeEEEEEecCCCc---eeEeecccCccCcEEEEEEecCCCEEEEEeC-----CCeEEEEEccC
Q 004581 95 VEDRRVALACDD-----GCVRIYRITDSDE---LIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-----DGYIRSWDAKL 161 (744)
Q Consensus 95 ~~~~~la~~~~d-----g~i~iwd~~~~~~---~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~-----dg~i~vwd~~~ 161 (744)
.++.+++.|+.+ ..+..+|+.+... ......+....... +++. -++++.+.|+. ...+.+||+.+
T Consensus 71 ~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~-~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 71 VENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENG-SACY-KDGTLYVGGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred ECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCc-eEEE-ECCEEEEEeCcCCCccCceEEEEcCCC
Confidence 355667777754 3566677764432 11112222111111 2222 25666676664 23688888876
Q ss_pred CceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCC----CEEEEeCCCcce
Q 004581 162 GYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTG----SVQFWDSRHGTL 213 (744)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~ 213 (744)
.+-...-..+ .....-.+++...+..++.|+.++ .+.+||.++.+.
T Consensus 149 ~~W~~~~~~p------~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 149 QEWFELPDFP------GEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCeeECCCCC------CCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 5432211100 001111112222233566666553 356888887654
No 490
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=81.81 E-value=24 Score=36.20 Aligned_cols=144 Identities=12% Similarity=0.030 Sum_probs=81.8
Q ss_pred EEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCccc
Q 004581 9 FSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDE 88 (744)
Q Consensus 9 ~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (744)
..++....+.--|++.|+.+.....|..- -+.|.|+.+.--
T Consensus 484 ~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~q------------------------------------- 524 (776)
T COG5167 484 LDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQ------------------------------------- 524 (776)
T ss_pred ecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHh-------------------------------------
Confidence 44555667777788888888888776654 577888764220
Q ss_pred ccccccccCCeEEEEecCCeEEEEEec-CCCceeEeecccCccCcEEEEEEe----cCCCEEEEEeCCCeEEEEEccCCc
Q 004581 89 LHEQSVVEDRRVALACDDGCVRIYRIT-DSDELIYHRSLPRVSGRVLSVTWS----ADGNMLYSGSSDGYIRSWDAKLGY 163 (744)
Q Consensus 89 ~~~~~~~~~~~la~~~~dg~i~iwd~~-~~~~~~~~~~~~~h~~~V~~~~~s----~dg~~l~t~~~dg~i~vwd~~~~~ 163 (744)
..+.+.| +|-.+..|.-.|.. .+..+.... ....++--.|| ....++|.|+..|.|++||--.-+
T Consensus 525 -----mt~eqtl-vGlS~~svFrIDPR~~gNKi~v~e----sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r 594 (776)
T COG5167 525 -----MTDEQTL-VGLSDYSVFRIDPRARGNKIKVVE----SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR 594 (776)
T ss_pred -----cCccceE-EeecccceEEecccccCCceeeee----ehhccccccccccccccCceEEEecCCCceeeehhhcch
Confidence 0111234 44444555444544 232222111 11122222232 244589999999999999964333
Q ss_pred eEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCC
Q 004581 164 EIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSR 209 (744)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~ 209 (744)
....++ +....|..+..+.+|..+.+.....+.+-|+.
T Consensus 595 AKtalP--------~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 595 AKTALP--------GLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred hhhcCc--------ccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 333333 56677888888889933333334556666654
No 491
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=81.52 E-value=52 Score=31.68 Aligned_cols=248 Identities=12% Similarity=0.087 Sum_probs=0.0
Q ss_pred EEEEEecCC-eEEEEcCCCCEEEEeCC-------CcceEEEeecccc-----ceeEEEEcCCCCEEEeecCCCeEEEEEc
Q 004581 184 WSLLSLRCG-TLVSADSTGSVQFWDSR-------HGTLLQAHSFHKG-----DVNALAAAPSHNRVFSTGSDGQVILYKA 250 (744)
Q Consensus 184 ~~~~~~~~~-~l~s~~~dg~i~vwd~~-------~~~~~~~~~~h~~-----~v~~l~~~~~~~~l~~~~~dg~i~iw~~ 250 (744)
|.|+++|.+ ..++....+...+||.. ...++-++..... ..+.+.|+....+.+++...
T Consensus 26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~-------- 97 (336)
T TIGR03118 26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI-------- 97 (336)
T ss_pred ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc--------
Q ss_pred ccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEE
Q 004581 251 SCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLIS 330 (744)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s 330 (744)
.... .++.
T Consensus 98 ~~~a------------------------------------------------------------------------~Fif 105 (336)
T TIGR03118 98 TGPS------------------------------------------------------------------------RFLF 105 (336)
T ss_pred ccce------------------------------------------------------------------------eEEE
Q ss_pred ecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceE
Q 004581 331 AGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLL 410 (744)
Q Consensus 331 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 410 (744)
+++||+|.-|...-........ .+
T Consensus 106 ~tEdGTisaW~p~v~~t~~~~~--------------------------------------------------------~~ 129 (336)
T TIGR03118 106 VTEDGTLSGWAPALGTTRMTRA--------------------------------------------------------EI 129 (336)
T ss_pred EeCCceEEeecCcCCccccccc--------------------------------------------------------EE
Q ss_pred EEEEecCCCCeEEEEEcCC--CCEEEEE--cCCceEEEEeecCCCCCceEEeeeccCCcccc------------------
Q 004581 411 VQVKSKASRKIICSTISNS--GMLFAYS--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQ------------------ 468 (744)
Q Consensus 411 ~~~~~~~~~~i~~~~~s~~--g~~la~~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 468 (744)
.--......--..+++... +.+|..+ ..++|.+|+-. .....+.+...
T Consensus 130 ~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~----------f~~~~~~g~F~DP~iPagyAPFnIqnig~ 199 (336)
T TIGR03118 130 VVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS----------FRPPPLPGSFIDPALPAGYAPFNVQNLGG 199 (336)
T ss_pred EEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc----------cccccCCCCccCCCCCCCCCCcceEEECC
Q ss_pred --cccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECC------CCCEEEEEeC
Q 004581 469 --FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSS------DGQWLAAVNC 540 (744)
Q Consensus 469 --~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp------dg~~las~~~ 540 (744)
.|+-..-.++.+.=+.|..-|.|-+||+. |++++.+.. ...-..-+.|+..| .|.+|+---.
T Consensus 200 ~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as---------~g~LNaPWG~a~APa~FG~~sg~lLVGNFG 269 (336)
T TIGR03118 200 TLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVAS---------SGRLNAPWGLAIAPESFGSLSGALLVGNFG 269 (336)
T ss_pred eEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEecc---------CCcccCCceeeeChhhhCCCCCCeEEeecC
Q ss_pred CCcEEEEECCCcceEEEEecCCC-----CceeEEeecC-----CCCCeEEEEecCCe
Q 004581 541 FGDVYIFNLEIQRQHWFISRLEG-----ASVTAAGFPP-----QNNNVLIITTSSNQ 587 (744)
Q Consensus 541 dg~i~iwd~~~~~~~~~~~~~~~-----~~v~~l~~sp-----~~~~~l~~~~~d~~ 587 (744)
||+|..||..+++..-.+....+ ...+.|+|.. ....+.++++.+..
T Consensus 270 DG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGng~~~~~~ntLyFaAGp~de 326 (336)
T TIGR03118 270 DGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGNGVSGGSANYLYFTAGPDDE 326 (336)
T ss_pred CceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCCCcCCCCcceEEEEeCCCCc
No 492
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=81.27 E-value=17 Score=34.10 Aligned_cols=31 Identities=10% Similarity=-0.038 Sum_probs=23.6
Q ss_pred ccccceeecCCeEEEEEeCCeEEEEEeeccC
Q 004581 363 HLVHNTIFSHTSLLLVQYSCRLDILSVRLEN 393 (744)
Q Consensus 363 ~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~ 393 (744)
..-..+...|+|++++.+...-.|++.....
T Consensus 170 nlYP~~~llPdG~lFi~an~~s~i~d~~~n~ 200 (243)
T PF07250_consen 170 NLYPFVHLLPDGNLFIFANRGSIIYDYKTNT 200 (243)
T ss_pred ccCceEEEcCCCCEEEEEcCCcEEEeCCCCe
Confidence 4444667789999999988888888877654
No 493
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=81.17 E-value=14 Score=28.26 Aligned_cols=41 Identities=7% Similarity=0.237 Sum_probs=31.3
Q ss_pred CCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEe
Q 004581 540 CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITT 583 (744)
Q Consensus 540 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~ 583 (744)
.+|.+.-||..+++....+.+.+ -.+.+++++ |+++|+++-
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~--fpNGVals~-d~~~vlv~E 75 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLY--FPNGVALSP-DESFVLVAE 75 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEES--SEEEEEE-T-TSSEEEEEE
T ss_pred CCcCEEEEECCCCeEEEehhCCC--ccCeEEEcC-CCCEEEEEe
Confidence 35889999999998777776654 789999999 988777764
No 494
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.00 E-value=17 Score=41.99 Aligned_cols=153 Identities=14% Similarity=0.214 Sum_probs=89.1
Q ss_pred cCCCeEEEEEccCCceeEEeeccCcceeEEeec-cCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCccccc
Q 004581 12 SIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVA-PSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELH 90 (744)
Q Consensus 12 ~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~s-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (744)
+.|+.+.+|+.+++.....+.+....|-.|..- |.-..++
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv--------------------------------------- 136 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFV--------------------------------------- 136 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcch---------------------------------------
Confidence 568999999999988888899888888887754 3221110
Q ss_pred ccccccCCeEEEEecCCeEEEEEecCC----CceeEeec--ccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEc----c
Q 004581 91 EQSVVEDRRVALACDDGCVRIYRITDS----DELIYHRS--LPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDA----K 160 (744)
Q Consensus 91 ~~~~~~~~~la~~~~dg~i~iwd~~~~----~~~~~~~~--~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~----~ 160 (744)
+.=++|.+-..--.|.|+-+.-. +.-.+... +.-..-.|+|+....+|+.+.+| .|| .+|.+ +
T Consensus 137 ----~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~ 209 (1311)
T KOG1900|consen 137 ----PEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAE 209 (1311)
T ss_pred ----hhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCC--CEEEEEEecc
Confidence 00023333333356777766522 21111111 11224578999988888877665 455 45543 2
Q ss_pred CC---c-eEEEEEe---------cCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCC
Q 004581 161 LG---Y-EIYRITV---------GLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH 210 (744)
Q Consensus 161 ~~---~-~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~ 210 (744)
.| + +...... ..-.....+..+|..+...... .+.+-++.|+|.+||+..
T Consensus 210 ~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 210 DGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 21 1 1100000 0000112456788888887655 678889999999999975
No 495
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=80.29 E-value=53 Score=30.99 Aligned_cols=163 Identities=9% Similarity=0.018 Sum_probs=95.0
Q ss_pred CCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccC
Q 004581 419 RKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS 498 (744)
Q Consensus 419 ~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~ 498 (744)
.+.....|.+.|.+-.++..+.-- +++.....+++|... .......|+..|||...++.-.+..|-..|..+
T Consensus 148 ~nlet~vfD~~G~lWFt~q~G~yG--rLdPa~~~i~vfpaP------qG~gpyGi~atpdGsvwyaslagnaiaridp~~ 219 (353)
T COG4257 148 ANLETAVFDPWGNLWFTGQIGAYG--RLDPARNVISVFPAP------QGGGPYGICATPDGSVWYASLAGNAIARIDPFA 219 (353)
T ss_pred CcccceeeCCCccEEEeeccccce--ecCcccCceeeeccC------CCCCCcceEECCCCcEEEEeccccceEEccccc
Confidence 556677788888776665433211 222111223333222 122567888899999888877777788778766
Q ss_pred CceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceE-EEEecCCCCceeEEeecCCCCC
Q 004581 499 SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQH-WFISRLEGASVTAAGFPPQNNN 577 (744)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~l~~sp~~~~ 577 (744)
+.. ..+.... .....-..+--+|.|+.-++....+.++.||-.+..-. +.++.. +....++-... .+.
T Consensus 220 ~~a-ev~p~P~--------~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs-~arpys~rVD~-~gr 288 (353)
T COG4257 220 GHA-EVVPQPN--------ALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGS-KARPYSMRVDR-HGR 288 (353)
T ss_pred CCc-ceecCCC--------cccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCC-CCCcceeeecc-CCc
Confidence 622 2222210 01333455666788888888878888888887765422 233332 24556666654 444
Q ss_pred eEEEEecCCeEEEEEcCCCcccc
Q 004581 578 VLIITTSSNQVYVFDVEAKQLGE 600 (744)
Q Consensus 578 ~l~~~~~d~~v~vwd~~~~~~~~ 600 (744)
.-.+--..|.|.-||-++.+++.
T Consensus 289 VW~sea~agai~rfdpeta~ftv 311 (353)
T COG4257 289 VWLSEADAGAIGRFDPETARFTV 311 (353)
T ss_pred EEeeccccCceeecCcccceEEE
Confidence 44444445677778877776543
No 496
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=80.29 E-value=5.7 Score=24.47 Aligned_cols=30 Identities=30% Similarity=0.534 Sum_probs=20.0
Q ss_pred CccCcEEEEEEecCCCEEEEEeC-C--CeEEEE
Q 004581 128 RVSGRVLSVTWSADGNMLYSGSS-D--GYIRSW 157 (744)
Q Consensus 128 ~h~~~V~~~~~s~dg~~l~t~~~-d--g~i~vw 157 (744)
...+.-.+.+|||||+.|+-++. + |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34556788999999998887664 3 555554
No 497
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=80.00 E-value=1.2e+02 Score=34.76 Aligned_cols=107 Identities=13% Similarity=0.060 Sum_probs=68.4
Q ss_pred EEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEE--EEECCC
Q 004581 474 IFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVY--IFNLEI 551 (744)
Q Consensus 474 ~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~--iwd~~~ 551 (744)
++.|-..++.+|- ...+++||+...++++..... .....|+.+++ .+..+++|+..-.|. .|+-+.
T Consensus 940 Ai~~f~~~~Lagv-G~~l~~YdlG~K~lLRk~e~k---------~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~ 1007 (1205)
T KOG1898|consen 940 AICPFQGRVLAGV-GRFLRLYDLGKKKLLRKCELK---------FIPNRISSIQT--YGARIVVGDIQESVHFVRYRRED 1007 (1205)
T ss_pred EEeccCCEEEEec-ccEEEEeeCChHHHHhhhhhc---------cCceEEEEEee--cceEEEEeeccceEEEEEEecCC
Confidence 4456666665544 557999999877777655431 02556777776 566888887655555 455555
Q ss_pred cceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcC
Q 004581 552 QRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVE 594 (744)
Q Consensus 552 ~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~ 594 (744)
.+.+......-...|+++.+- |...+|.+..-|.+.+-.+.
T Consensus 1008 n~l~~fadD~~pR~Vt~~~~l--D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1008 NQLIVFADDPVPRHVTALELL--DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CeEEEEeCCCccceeeEEEEe--cCCceeeccccCcEEEEECC
Confidence 554433322222467777766 56778888888888777664
No 498
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=79.98 E-value=85 Score=33.12 Aligned_cols=144 Identities=17% Similarity=0.160 Sum_probs=72.2
Q ss_pred cccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEec
Q 004581 92 QSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVG 171 (744)
Q Consensus 92 ~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~ 171 (744)
..+.....+-+|+.|| +..||..+++.+. ........+|..+.-+-.|+ |..|+.+| |.+.+.+..+.......
T Consensus 170 Lv~D~~g~lWvgT~dG-L~~fd~~~gkalq--l~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~~sn~~~~- 243 (671)
T COG3292 170 LVFDANGRLWVGTPDG-LSYFDAGRGKALQ--LASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEGWRASNWGPM- 243 (671)
T ss_pred eeeeccCcEEEecCCc-ceEEccccceEEE--cCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhhccccccCCC-
Confidence 3334445788888887 4455655455442 22223335677766665655 66666664 66666554221111110
Q ss_pred CCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeecc--ccceeEEEEcCCCCEEEeecCCCeEEEE
Q 004581 172 LGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFH--KGDVNALAAAPSHNRVFSTGSDGQVILY 248 (744)
Q Consensus 172 ~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~l~~~~~dg~i~iw 248 (744)
-....|..+.-..+|.+-.|+..|..+.--.+.+-.+...+.| -..|.++-...+|+ |-+++.+|.+++-
T Consensus 244 ------lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~ 315 (671)
T COG3292 244 ------LPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYL 315 (671)
T ss_pred ------CcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEEEe
Confidence 1223344443334456666666664443322222122222222 24566677776775 6666666655543
No 499
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=79.92 E-value=92 Score=33.51 Aligned_cols=129 Identities=9% Similarity=0.110 Sum_probs=65.8
Q ss_pred CCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCc
Q 004581 430 GMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCR 509 (744)
Q Consensus 430 g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 509 (744)
..+|+.+.....+++.+...+....+-.++...+......+.+-.+. +.+++=....+ |++.+...++....+...
T Consensus 371 ~~~lv~S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~-i~l~~~~~~~~~~~w~~~- 446 (504)
T PF10433_consen 371 HSYLVLSFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKG-IRLIDLEDGKLTQEWKPP- 446 (504)
T ss_dssp BSEEEEEESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSE-EEEEESSSTSEEEEEE-T-
T ss_pred ceEEEEEcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCe-EEEEECCCCeEEEEEeCC-
Confidence 57888888888888888521112222111111111111122222222 55555555444 888988777777665432
Q ss_pred ccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecC----CCCceeEEeecC
Q 004581 510 EEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRL----EGASVTAAGFPP 573 (744)
Q Consensus 510 ~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~----~~~~v~~l~~sp 573 (744)
....|.+.+. ++.+++.+..++.+.++.++........... ....|.++...|
T Consensus 447 ---------~~~~I~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 447 ---------AGSIIVAASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp ---------TS---SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred ---------CCCeEEEEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 3455666665 4457777778899999999877654333211 235788888766
No 500
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=78.31 E-value=33 Score=33.09 Aligned_cols=38 Identities=13% Similarity=0.053 Sum_probs=26.7
Q ss_pred CeEEEEEccCCceeEEeeccCcceeEEeeccCCCcccc
Q 004581 15 GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMH 52 (744)
Q Consensus 15 ~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~ 52 (744)
..|++||..+.+=...-.+-.+.|.+|.|..+.+.++.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~ 53 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVG 53 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEE
Confidence 47999998775544444456789999999866644433
Done!