Query 004581
Match_columns 744
No_of_seqs 850 out of 3526
Neff 11.4
Searched_HMMs 29240
Date Tue Mar 26 18:20:40 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004581.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1882-1885//hhsearch_pdb/004581hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 1.0 1 1 475.6 54.0 537 2-647 27-609 (611)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 459.6 53.6 543 1-649 623-1207(1249)
3 2ymu_A WD-40 repeat protein; u 1.0 1 1 455.2 60.8 497 1-629 24-561 (577)
4 1nr0_A Actin interacting prote 1.0 1 1 453.3 58.0 149 94-253 68-222 (611)
5 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 447.4 50.0 505 27-649 607-1158(1249)
6 2ymu_A WD-40 repeat protein; u 1.0 1 1 441.6 53.2 494 26-647 7-537 (577)
7 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 415.8 52.3 476 1-572 25-690 (902)
8 1pgu_A Actin interacting prote 1.0 1 1 409.6 55.2 522 1-647 26-612 (615)
9 1pgu_A Actin interacting prote 1.0 1 1 398.6 54.0 500 4-595 77-614 (615)
10 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 393.6 52.6 490 31-647 13-659 (902)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=475.58 Aligned_cols=537 Identities=14% Similarity=0.107 Sum_probs=373.2
Q ss_pred CCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99997058733997089997657805389601483125996426998544311145545776336889999987676677
Q 004581 2 GLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESE 81 (744)
Q Consensus 2 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~i~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (744)
++.|.+|++++ ++.|++||+.+++....+.+|...|++++|+|+|+++|+++. +..+++|+........ ... .
T Consensus 27 spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~---d~~v~lWd~~~~~~~~--~~~-~ 99 (611)
T 1nr0_A 27 TPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV---HGNVRIWDTTQTTHIL--KTT-I 99 (611)
T ss_dssp CTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEET---TSEEEEEESSSTTCCE--EEE-E
T ss_pred CCCCCEEEECC-CCEEEEECCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEEC---CCCEEEEECCCCCCEE--EEE-E
T ss_conf 79999799679-997999457872427376589986599999999968999948---9978994898984156--676-2
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECC----CEEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCC-EEEEEECCCEEEE
Q ss_conf 9998600001232458969987449----7199999507983268401367557489999716999-8999828990999
Q 004581 82 NDSDSDELHEQSVVEDRRVALACDD----GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRS 156 (744)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~la~~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~V~~i~~s~dg~-~l~t~~~dg~i~i 156 (744)
....+....+.+.+++++||+++.+ +.|++||. +... ..+.+|...|.+++|+|++. .|++++.|++|++
T Consensus 100 ~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~---~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~l 174 (611)
T 1nr0_A 100 PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSN---GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI 174 (611)
T ss_dssp ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBC---BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEE
T ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEEC--CCCC---CEECCCCCCCEEEEECCCCCEEEEEEECCCEEEE
T ss_conf 2557844899989999979999899773669999638--9976---3254788983699988999829999928980999
Q ss_pred EECCCCCEEEEEEECCCCCCCCCCEEEEEEEEECCC-EEEEECCCCCEEEEECCCCCEEEEEE-------CCCCCEEEEE
Q ss_conf 986689359999814799888995259999990599-29998399979997299862489862-------1665325999
Q 004581 157 WDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHS-------FHKGDVNALA 228 (744)
Q Consensus 157 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-------~h~~~v~~l~ 228 (744)
||..+++....+. +|...|++++|+|++ +|++++.|+.|++||..+++.+..+. +|.+.|.+++
T Consensus 175 wd~~~~~~~~~l~--------~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~ 246 (611)
T 1nr0_A 175 FEGPPFKFKSTFG--------EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT 246 (611)
T ss_dssp EETTTBEEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEE
T ss_pred EECCCCEEEEEEC--------CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEE
T ss_conf 9799975766520--------02571699999799998999989991999889998286651366432356678789999
Q ss_pred ECCCCCEEEEECCCCEEEEEECCCCCCCCCC----CC-------------CC----CCCCCEE-----EEEEEEEECCCC
Q ss_conf 8489997995437981999981047689998----88-------------76----4331118-----999632310586
Q 004581 229 AAPSHNRVFSTGSDGQVILYKASCESIGPND----GL-------------SS----SEVIKKW-----IYVGSVRAHTHD 282 (744)
Q Consensus 229 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~----~~-------------~~----~~~~~~~-----~~~~~~~~h~~~ 282 (744)
|+|++++|++++.|++|++|++..+.....- .. .. ......| .....+.+|...
T Consensus 247 ~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~ 326 (611)
T 1nr0_A 247 WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKA 326 (611)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSC
T ss_pred ECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCEEEEECCCCCCCEEECCCCCC
T ss_conf 97999999999089809999688870134404788766406899973887999958996899968899744698378888
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12344303577899998331112479887754443321358973999863898099974676577788655799988840
Q 004581 283 VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPI 362 (744)
Q Consensus 283 v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (744)
|.+++++ |+++ .|++++.|+.|++|++.+...... ....+.
T Consensus 327 v~~l~~s---------pdg~------------------------~l~s~s~D~~v~~Wd~~~~~~~~~------~~~~h~ 367 (611)
T 1nr0_A 327 ITALSSS---------ADGK------------------------TLFSADAEGHINSWDISTGISNRV------FPDVHA 367 (611)
T ss_dssp EEEEEEC---------TTSS------------------------EEEEEETTSCEEEEETTTCCEEEC------SSCSCS
T ss_pred EEEEEEE---------CCCC------------------------EEEEEECCCCEEEEECCCCCEEEE------CCCCCC
T ss_conf 8999991---------8999------------------------899995898499997887925632------166776
Q ss_pred CCCCCEEECCCEEEEEEE-CCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCE
Q ss_conf 001221331773899992-8947999710357745678998878751289998349977499997079999999839812
Q 004581 363 HLVHNTIFSHTSLLLVQY-SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKP 441 (744)
Q Consensus 363 ~~v~~~~~s~~~~~l~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i 441 (744)
..+..+++++++.++..+ ++.+++|+......... ..... .......+++++|+|+.++++.+..+
T Consensus 368 ~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~-----------~~~~~--~~~~~~~~~~~s~dg~~~~~~~~~~v 434 (611)
T 1nr0_A 368 TMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSS-----------KAVAN--KLSSQPLGLAVSADGDIAVAACYKHI 434 (611)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTT-----------SCCEE--ECSSCEEEEEECTTSSCEEEEESSEE
T ss_pred CEEEEEEECCCCCEEEEECCCCEEEEECCCCCCCCC-----------CEEEE--ECCCCCCEEEEECCCCEEEEEECCEE
T ss_conf 507899987899699998489668954688543565-----------21200--14899707998079969999967639
Q ss_pred EEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCE--EEEECCCCCCCCCCCCCC
Q ss_conf 999962278897227862105883456521899910899899991799199999469711--221056864556668999
Q 004581 442 SLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSEL--LHTFTPCREEHDREIQPS 519 (744)
Q Consensus 442 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~ 519 (744)
++|+. .. +..+ .+...+.+++|+||+++|++++.|+.|++|++.+++. ... .+ |
T Consensus 435 ~~~~~-----~~-~~~~------~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~-----------h 490 (611)
T 1nr0_A 435 AIYSH-----GK-LTEV------PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IV-----------H 490 (611)
T ss_dssp EEEET-----TE-EEEE------ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EE-----------C
T ss_pred EEEEC-----CC-EEEE------ECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEEC-CC-----------C
T ss_conf 99848-----94-3464------068895499992899899996899739999945992224101-57-----------7
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCC-CCEEEE-EECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 99667999877998999994898299999888-514789-8067898636986549999939999369839999968886
Q 004581 520 EPPITKMFTSSDGQWLAAVNCFGDVYIFNLEI-QRQHWF-ISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 597 (744)
Q Consensus 520 ~~~i~~l~~s~dg~~las~~~dg~i~iwd~~~-~~~~~~-~~~~~~~~v~~l~~sp~d~~~l~~~~~d~~i~iwd~~~~~ 597 (744)
...|++++|||||++||+++.|+.|++|++.+ ++.... ....|...|++++|+| |+++|++++.|++|++|++++++
T Consensus 491 ~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fsp-dg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 491 PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCTT
T ss_pred CCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEEEEECCCCEEEEEECC-CCCEEEEEECCCCEEEEECCCCC
T ss_conf 88607999989999899994899899988577872232102640466425899899-89979999799729999788755
Q ss_pred CCCCCCCCCCCCC-CCCCCC-CCCEEEEEECCCCCCCEEEEECCCEEEEEEC
Q ss_conf 5611001459746-100149-8846799957999985799985844999948
Q 004581 598 LGEWSMQHTFVLP-RRYQEF-PGEVIGLSFSPSPSSSSVIIYSARAMCVIDF 647 (744)
Q Consensus 598 ~~~ws~~~~~~~~-~~~~~~-~~~v~~i~fspdg~~~~~~~~~~~~~~~~d~ 647 (744)
. .+ ..+.+| ...+.+++|+|||. .+-......+.+.++
T Consensus 570 ~----------~~~~~~~~h~~~~v~~v~fs~d~~--l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 570 D----------HPIIIKGAHAMSSVNSVIWLNETT--IVSAGQDSNIKFWNV 609 (611)
T ss_dssp S----------CCEEETTSSTTSCEEEEEEEETTE--EEEEETTSCEEEEEC
T ss_pred C----------CCCHHHCCCCCCCEEEEEECCCCE--EEEECCCCCEEEEEC
T ss_conf 5----------632644467656711899858997--999528877899844
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=459.62 Aligned_cols=543 Identities=14% Similarity=0.145 Sum_probs=421.5
Q ss_pred CCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999705873399708999765780538960148312599642699854431114554577633688999998767667
Q 004581 1 MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSES 80 (744)
Q Consensus 1 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~i~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (744)
|++.+.+|++++.||+|++||+.+++.+..+.+|...|.+++|+|+++++++++. +..+.+|+..... .....
T Consensus 623 ~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---d~~v~vwd~~~~~----~~~~~ 695 (1249)
T 3sfz_A 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSA---DKKVKIWDSATGK----LVHTY 695 (1249)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET---TSEEEEEETTTCC----EEEEE
T ss_pred ECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEEC---CCEEEEEECCCCC----EEEEE
T ss_conf 8799998999948894999998999788876067777899999269998999818---9959998779993----68999
Q ss_pred CCCCCCCCCCCCCCC--CCCEEEEEECCCEEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEE
Q ss_conf 799986000012324--589699874497199999507983268401367557489999716999899982899099998
Q 004581 81 ENDSDSDELHEQSVV--EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWD 158 (744)
Q Consensus 81 ~~~~~~~~~~~~~~~--~~~~la~~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~i~~s~dg~~l~t~~~dg~i~iwd 158 (744)
.. .......+.+.+ +...+++++.|+.|++||+.++... ..+.+|.+.|.+++|+|++++|++++.||.|++||
T Consensus 696 ~~-~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~---~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd 771 (1249)
T 3sfz_A 696 DE-HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR---NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD 771 (1249)
T ss_dssp EC-CSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEE---EEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEE
T ss_pred CC-CCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCHH---HEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEE
T ss_conf 58-997379999840899659999808970999989996342---20127779788999925999899997898599996
Q ss_pred CCCCCEEEEEEECCCC-----CCCCCCEEEEEEEEECCC-EEEEECCCCCEEEEECCCCCEEEEEE-CCCCCEEEEEECC
Q ss_conf 6689359999814799-----888995259999990599-29998399979997299862489862-1665325999848
Q 004581 159 AKLGYEIYRITVGLGG-----LGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHS-FHKGDVNALAAAP 231 (744)
Q Consensus 159 ~~~~~~~~~~~~~~~~-----~~~~~~~~v~~i~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~ 231 (744)
+.++.....+...... ........+.+++|+|++ .+++++ ++.+.+||..++..+..+. +|...|.+++|+|
T Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp 850 (1249)
T 3sfz_A 772 VRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP 850 (1249)
T ss_dssp GGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECS
T ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEC-CCCEEEEEECCCCCEEEECCCCCCCEEEEEECC
T ss_conf 8888655302023210246776445650179999978998899975-895999995689723577478777607999827
Q ss_pred CCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99979954379819999810476899988876433111899963231058612344303577899998331112479887
Q 004581 232 SHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREK 311 (744)
Q Consensus 232 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (744)
++..+++++.|+.|++|+...+. ....+.+|...|.+++|+ |++.
T Consensus 851 ~~~~l~~~~~dg~v~vwd~~~~~-----------------~~~~~~~h~~~v~~v~~s---------pdg~--------- 895 (1249)
T 3sfz_A 851 YDHLAVIALSQYCVELWNIDSRL-----------------KVADCRGHLSWVHGVMFS---------PDGS--------- 895 (1249)
T ss_dssp STTEEEEECSSSCEEEEETTTTE-----------------EEEEECCCSSCEEEEEEC---------TTSS---------
T ss_pred CCCEEEEEECCCEEEEEECCCCC-----------------EEEECCCCCCCEEEEEEC---------CCCC---------
T ss_conf 88889999479869999867895-----------------653227876656899998---------9999---------
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCC------------------------------CCCCCCCC
Q ss_conf 754443321358973999863898099974676577788655------------------------------79998884
Q 004581 312 PIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEI------------------------------CPAPQRVP 361 (744)
Q Consensus 312 ~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~------------------------------~~~~~~~~ 361 (744)
.+++++.|+.+++|+............ ........
T Consensus 896 ---------------~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 960 (1249)
T 3sfz_A 896 ---------------SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLP 960 (1249)
T ss_dssp ---------------EEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEEC
T ss_pred ---------------EEEEEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEECC
T ss_conf ---------------89999589728988746652010211331036897599868998137762489844765089725
Q ss_pred CCCCCCEEECCCEEEEEEE--CCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEE-CC
Q ss_conf 0001221331773899992--89479997103577456789988787512899983499774999970799999998-39
Q 004581 362 IHLVHNTIFSHTSLLLVQY--SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DH 438 (744)
Q Consensus 362 ~~~v~~~~~s~~~~~l~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~ 438 (744)
...+.+++++|++.+++.+ ++.+.+|++.... . ......|...+.+++|+|++++++++ .+
T Consensus 961 ~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~---------------~-~~~~~~h~~~v~~l~~s~dg~~l~s~~~d 1024 (1249)
T 3sfz_A 961 EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR---------------V-FSSGVGHKKAVRHIQFTADGKTLISSSED 1024 (1249)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSCCEEEETTTTS---------------C-EEECCCCSSCCCCEEECSSSSCEEEECSS
T ss_pred CCCEEEEEECCCCCEEEEECCCCCEEEEECCCCC---------------E-EEECCCCCCCEEEEEECCCCCEEEEECCC
T ss_conf 6727899995899779998699988999757872---------------3-44303677716899998999989998699
Q ss_pred CCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 81299996227889722786210588345652189991089989999179919999946971122105686455666899
Q 004581 439 VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQP 518 (744)
Q Consensus 439 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 518 (744)
+.+++|++.. +.. .....+...+.++.|+|++ .+++++.|+.|++||+.+++....+.+
T Consensus 1025 g~i~vwd~~~---~~~------~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~----------- 1083 (1249)
T 3sfz_A 1025 SVIQVWNWQT---GDY------VFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTC----------- 1083 (1249)
T ss_dssp SBEEEEETTT---TEE------ECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEEEC-----------
T ss_pred CEEEEEECCC---CCE------EEEECCCCCEEEEEECCCC-CEEEEECCCCEEEEECCCCCEEEEECC-----------
T ss_conf 8799998799---966------8985278738999990899-589997889689988898865588746-----------
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCC
Q ss_conf 99966799987799899999489829999988851478980678986369865499999399993698399999688865
Q 004581 519 SEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 598 (744)
Q Consensus 519 ~~~~i~~l~~s~dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~d~~~l~~~~~d~~i~iwd~~~~~~ 598 (744)
|...|++++|+|+++++++++.|+.|++|++.+++....+.. |...|++++|+| ++++|++++.||.|++||+.+++.
T Consensus 1084 ~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~-h~~~v~~~~~s~-dg~~lat~~~dg~i~vwd~~~~~~ 1161 (1249)
T 3sfz_A 1084 HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKG-HNGCVRCSAFSL-DGILLATGDDNGEIRIWNVSDGQL 1161 (1249)
T ss_dssp CSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCC-CSSCEEEEEECS-SSSEEEEEETTSCCCEEESSSSCC
T ss_pred CCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECC-CCCCEEEEEECC-CCCEEEEEECCCEEEEEECCCCCE
T ss_conf 688489999989999899984999489987898500125506-877679999979-999899982899799998899945
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCEEEEEECCC
Q ss_conf 611001459746100149884679995799998579998584499994899
Q 004581 599 GEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGR 649 (744)
Q Consensus 599 ~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~~~~~d~~~ 649 (744)
.. ...+.........|.+.+.+++|+|||+ +++.++..+.++|+..
T Consensus 1162 ~~--~~~~~~~~~~~~~~~~~v~~l~fs~dg~---~l~s~~g~v~vwd~~~ 1207 (1249)
T 3sfz_A 1162 LH--SCAPISVEEGTATHGGWVTDVCFSPDSK---TLVSAGGYLKWWNVAT 1207 (1249)
T ss_dssp CC--CCCCCC-------CCSCCCEEEECTTSS---CEEEESSSEEEBCSSS
T ss_pred EE--EECCCCCCCCCCCCCCEEEEEEECCCCC---EEEECCCEEEEEECCC
T ss_conf 78--8514444421025674289999978999---8997798599989888
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=455.24 Aligned_cols=497 Identities=20% Similarity=0.266 Sum_probs=300.6
Q ss_pred CCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999705873399708999765780538960148312599642699854431114554577633688999998767667
Q 004581 1 MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSES 80 (744)
Q Consensus 1 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~i~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (744)
++++|.+||+++.|++|++||. ++++++++.+|.+.|++++|+|+++++++++. +..+++|+... ......
T Consensus 24 ~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~---d~~i~vWd~~~-----~~~~~~ 94 (577)
T 2ymu_A 24 FSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASD---DKTVKLWNRNG-----QLLQTL 94 (577)
T ss_dssp ECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTS-----CEEEEE
T ss_pred ECCCCCEEEEEECCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEEC---CCEEEEEECCC-----CEEEEE
T ss_conf 9899899999938998999979-99789999689899899999899999999969---89799998999-----789999
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCE-------------------------------------EEE
Q ss_conf 7999860000123245896998744971999995079832-------------------------------------684
Q 004581 81 ENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDEL-------------------------------------IYH 123 (744)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~-------------------------------------~~~ 123 (744)
. ..........+.+++++|++++.|+.+++|+....... ...
T Consensus 95 ~-~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (577)
T 2ymu_A 95 T-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL 173 (577)
T ss_dssp C-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEE
T ss_pred E-CCCCCEEEEEECCCCCEEEEECCCCCEEECCCCCCEEEECCCCCCCEEEEEEECCCCCCEECCCCCCEECCCCCEEEE
T ss_conf 7-899988999998999989998079833520235520011047777435554203776320025553100000000000
Q ss_pred ECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEECCC-EEEEECCCCC
Q ss_conf 013675574899997169998999828990999986689359999814799888995259999990599-2999839997
Q 004581 124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGS 202 (744)
Q Consensus 124 ~~l~~h~~~V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~l~s~~~dg~ 202 (744)
.....|...|.+++|+|++++|++++.|+.|++|+. +++.+..+. +|...|.+++|+|++ ++++++.|+.
T Consensus 174 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~--------~~~~~v~~~~~s~dg~~l~~~~~d~~ 244 (577)
T 2ymu_A 174 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--------GHSSSVRGVAFSPDGQTIASASDDKT 244 (577)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE--------CCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred EECCCCCCCEEEEEECCCCCEEEEECCCCEEEEEEC-CCCEEEEEE--------CCCCCEEEEEECCCCCEEEEEECCCE
T ss_conf 002687763566541699778999859998999949-996899994--------68898899999799999999918998
Q ss_pred EEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC
Q ss_conf 99972998624898621665325999848999799543798199998104768999888764331118999632310586
Q 004581 203 VQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHD 282 (744)
Q Consensus 203 i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 282 (744)
|++||.. ++.+..+.+|...|.+++|+|++..+++++.|+.+++|+..... ...+.+|...
T Consensus 245 i~~w~~~-~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~------------------~~~~~~h~~~ 305 (577)
T 2ymu_A 245 VKLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQL------------------LQTLTGHSSS 305 (577)
T ss_dssp EEEECTT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE------------------EEEECCCSSC
T ss_pred EEEEECC-CCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCE------------------EEEEECCCCC
T ss_conf 9999599-97999980688987999996899999999599979999489958------------------9997068897
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12344303577899998331112479887754443321358973999863898099974676577788655799988840
Q 004581 283 VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPI 362 (744)
Q Consensus 283 v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (744)
|.+++++ |++. .+++++.|+.+++|+....... ....+.
T Consensus 306 v~~~~~~---------~~~~------------------------~l~t~~~d~~i~~w~~~~~~~~--------~~~~~~ 344 (577)
T 2ymu_A 306 VWGVAFS---------PDGQ------------------------TIASASDDKTVKLWNRNGQHLQ--------TLTGHS 344 (577)
T ss_dssp EEEEEEC---------TTSS------------------------EEEEEETTSCEEEEETTSCEEE--------EECCCS
T ss_pred EEEEEEC---------CCCC------------------------EEEEEECCCEEEEEECCCCEEE--------EEECCC
T ss_conf 6999999---------9999------------------------9999969995999969997257--------874788
Q ss_pred CCCCCEEECCCEEEEEEE--CCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEE-ECCC
Q ss_conf 001221331773899992--8947999710357745678998878751289998349977499997079999999-8398
Q 004581 363 HLVHNTIFSHTSLLLVQY--SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHV 439 (744)
Q Consensus 363 ~~v~~~~~s~~~~~l~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~ 439 (744)
..+.+++|+|++.+++++ ++.+.+|+... +.+.. ...|...+.+++|+|++++|++ +.++
T Consensus 345 ~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~----------------~~~~~-~~~~~~~v~~~~~s~dg~~l~~~~~d~ 407 (577)
T 2ymu_A 345 SSVWGVAFSPDGQTIASASDDKTVKLWNRNG----------------QLLQT-LTGHSSSVRGVAFSPDGQTIASASDDK 407 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTC----------------CEEEE-EECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred CCEEEEEECCCCCEEEEEECCCEEEEECCCC----------------CEEEE-ECCCCCCEEEEEECCCCCEEEEEECCC
T ss_conf 9779999989999999996999899990899----------------78998-527889748999989999999994999
Q ss_pred CEEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 12999962278897227862105883456521899910899899991799199999469711221056864556668999
Q 004581 440 KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPS 519 (744)
Q Consensus 440 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 519 (744)
.+++|+... ..+ ..+..|...+.+++|+||+++|++++.|+.|++|+. +++.+..+.+ |
T Consensus 408 ~v~~~~~~~----~~~-----~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~-----------~ 466 (577)
T 2ymu_A 408 TVKLWNRNG----QLL-----QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTG-----------H 466 (577)
T ss_dssp EEEEECTTC----CEE-----EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEEC-----------C
T ss_pred EEEEEECCC----CEE-----EEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEEC-CCCEEEEECC-----------C
T ss_conf 899996999----789-----896288997579999899999999939998999979-9988999727-----------8
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCC
Q ss_conf 99667999877998999994898299999888514789806789863698654999993999936983999996888656
Q 004581 520 EPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLG 599 (744)
Q Consensus 520 ~~~i~~l~~s~dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~d~~~l~~~~~d~~i~iwd~~~~~~~ 599 (744)
...|++++|+||+++||+++.|+.|++|+.. ++....+.. |...|++++|+| ++++|++++.|+.|++||..+.
T Consensus 467 ~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~~~~~~~~-h~~~v~~l~~s~-dg~~l~s~~~dg~v~lwd~~~~--- 540 (577)
T 2ymu_A 467 SSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTG-HSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQ--- 540 (577)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEETT-SCEEEEEEC-CSSCEEEEEECT-TSSCEEEEETTSEEEEECTTSC---
T ss_pred CCCEEEEEECCCCCEEEEEECCCEEEEECCC-CCEEEEEEC-CCCCEEEEEECC-CCCEEEEEECCCEEEEEECCCC---
T ss_conf 9977899996999999999198979999399-978999867-999989999918-9999999989699999969997---
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 110014597461001498846799957999
Q 004581 600 EWSMQHTFVLPRRYQEFPGEVIGLSFSPSP 629 (744)
Q Consensus 600 ~ws~~~~~~~~~~~~~~~~~v~~i~fspdg 629 (744)
+...+.+|.+.|.+++|+|||
T Consensus 541 ---------~~~~~~~h~~~v~~~~fs~dg 561 (577)
T 2ymu_A 541 ---------LLQTLTGHSSSVWGVAFSPDG 561 (577)
T ss_dssp ---------EEEEEECCSSCEEEEEECTTS
T ss_pred ---------EEEEECCCCCCEEEEEECCCC
T ss_conf ---------898971888887899996899
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=453.29 Aligned_cols=149 Identities=19% Similarity=0.284 Sum_probs=67.9
Q ss_pred CCCCCEEEEEECCCEEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEECC----CEEEEEECCCCCEEEEEE
Q ss_conf 2458969987449719999950798326840136755748999971699989998289----909999866893599998
Q 004581 94 VVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD----GYIRSWDAKLGYEIYRIT 169 (744)
Q Consensus 94 ~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~i~~s~dg~~l~t~~~d----g~i~iwd~~~~~~~~~~~ 169 (744)
.+++++||+|+.|+.|+|||+.++... ....+.+|.+.|.+++|+||++.|++++.+ +.|++|| ++.....+.
T Consensus 68 spdg~~lasg~~d~~v~lWd~~~~~~~-~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~ 144 (611)
T 1nr0_A 68 SPSGYYCASGDVHGNVRIWDTTQTTHI-LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLT 144 (611)
T ss_dssp CTTSSEEEEEETTSEEEEEESSSTTCC-EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCC
T ss_pred CCCCCEEEEEECCCCEEEEECCCCCCE-EEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEE--CCCCCCEEC
T ss_conf 999968999948997899489898415-66762255784489998999997999989977366999963--899763254
Q ss_pred ECCCCCCCCCCEEEEEEEEECCC--EEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEE
Q ss_conf 14799888995259999990599--2999839997999729986248986216653259998489997995437981999
Q 004581 170 VGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVIL 247 (744)
Q Consensus 170 ~~~~~~~~~~~~~v~~i~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~i 247 (744)
+|...|.+++|+|++ .|++++.|+.|++||..+++++..+.+|...|.+++|+|++++|++++.|++|++
T Consensus 145 --------gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~l 216 (611)
T 1nr0_A 145 --------GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVL 216 (611)
T ss_dssp --------CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred --------CCCCCCEEEEECCCCCEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEE
T ss_conf --------788983699988999829999928980999979997576652002571699999799998999989991999
Q ss_pred EECCCC
Q ss_conf 981047
Q 004581 248 YKASCE 253 (744)
Q Consensus 248 w~~~~~ 253 (744)
|+...+
T Consensus 217 wd~~~g 222 (611)
T 1nr0_A 217 YNGVDG 222 (611)
T ss_dssp EETTTC
T ss_pred EECCCC
T ss_conf 889998
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=447.36 Aligned_cols=505 Identities=12% Similarity=0.119 Sum_probs=373.8
Q ss_pred EEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 53896014831259964269985443111455457763368899999876766779998600001232458969987449
Q 004581 27 QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDD 106 (744)
Q Consensus 27 ~~~~~~~h~~~i~~i~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d 106 (744)
....+.+|.+.|++++|+|++ +++|+|+.|
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~--------------------------------------------------~~l~s~~~d 636 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDG--------------------------------------------------QRIASCGAD 636 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTS--------------------------------------------------SEEEEEETT
T ss_pred CEEEEECCCCCEEEEEECCCC--------------------------------------------------CEEEEEECC
T ss_conf 227871666648999987999--------------------------------------------------989999488
Q ss_pred CEEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEE
Q ss_conf 71999995079832684013675574899997169998999828990999986689359999814799888995259999
Q 004581 107 GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSL 186 (744)
Q Consensus 107 g~i~iwd~~~~~~~~~~~~l~~h~~~V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i 186 (744)
|.|++||+.++..+ ..+.+|.+.|.+++|+|++++|++++.|+.|++||+.+++.+..+. +|...|.++
T Consensus 637 ~~i~vw~~~~~~~~---~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--------~~~~~v~~~ 705 (1249)
T 3sfz_A 637 KTLQVFKAETGEKL---LDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD--------EHSEQVNCC 705 (1249)
T ss_dssp SCEEEEETTTCCEE---EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--------CCSSCEEEE
T ss_pred CEEEEEECCCCCEE---EEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEC--------CCCCCEEEE
T ss_conf 94999998999788---8760677778999992699989998189959998779993689995--------899737999
Q ss_pred EEECCC---EEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 990599---29998399979997299862489862166532599984899979954379819999810476899988876
Q 004581 187 LSLRCG---TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSS 263 (744)
Q Consensus 187 ~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 263 (744)
.|++++ .+++++.|+.|++||+.+++++..+.+|...|.+++|+|+++++++++.||.|++|++..+.....-....
T Consensus 706 ~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 785 (1249)
T 3sfz_A 706 HFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKR 785 (1249)
T ss_dssp EECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCC
T ss_pred EEECCCCCEEEEEEECCCEEEEEECCCCCHHHEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEECCCC
T ss_conf 98408996599998089709999899963422012777978899992599989999789859999688886553020232
Q ss_pred CCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC-------------------CCCCCCCCCCCCC
Q ss_conf 433111899963231058612344303577899998331112479887-------------------7544433213589
Q 004581 264 SEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREK-------------------PIDFSYHKWAHLG 324 (744)
Q Consensus 264 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~w~~~~ 324 (744)
...........+...+.+++|+ |++.......... ...... ....++
T Consensus 786 ----~~~~~~~~~~~~~~~v~~~~~s---------~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~-~~~sp~ 851 (1249)
T 3sfz_A 786 ----FFLSSEDPPEDVEVIVKCCSWS---------ADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQY-CDFSPY 851 (1249)
T ss_dssp ----CC--------CCCCCBCCCCBC---------TTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCE-EEECSS
T ss_pred ----CCCCCCCCCCCCCCEEEEEEEC---------CCCCEEEEECCCCEEEEEECCCCCEEEECCCCCCCEEE-EEECCC
T ss_conf ----1024677644565017999997---------89988999758959999956897235774787776079-998278
Q ss_pred CCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEE--CCEEEEEEEECCCCCCCCCCCC
Q ss_conf 73999863898099974676577788655799988840001221331773899992--8947999710357745678998
Q 004581 325 VPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY--SCRLDILSVRLENNVESRSSSG 402 (744)
Q Consensus 325 ~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~~~~i~~~~~~~~~~~~~~~~ 402 (744)
+..+++++.|+.+++|+..+...... ...+...+.+++|+|++..++++ ++.+.+|++.............
T Consensus 852 ~~~l~~~~~dg~v~vwd~~~~~~~~~-------~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~ 924 (1249)
T 3sfz_A 852 DHLAVIALSQYCVELWNIDSRLKVAD-------CRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQ 924 (1249)
T ss_dssp TTEEEEECSSSCEEEEETTTTEEEEE-------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEE
T ss_pred CCEEEEEECCCEEEEEECCCCCEEEE-------CCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCC
T ss_conf 88899994798699998678956532-------27876656899998999989999589728988746652010211331
Q ss_pred --------C------CCCCCEEE-------EEEECCCCCEEEEEECCCCCEEEEE-CCCCEEEEEEECCCCCCCEEEEEE
Q ss_conf --------8------78751289-------9983499774999970799999998-398129999622788972278621
Q 004581 403 --------G------HASTSLLV-------QVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINK 460 (744)
Q Consensus 403 --------~------~~~~~~~~-------~~~~~~~~~i~~~~~s~~g~~la~~-~~~~i~i~~~~~~~~~~~~~~~~~ 460 (744)
. ......+. .........+.+++++|++++++++ .++.+++|++.. +...
T Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~---~~~~----- 996 (1249)
T 3sfz_A 925 EIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN---NRVF----- 996 (1249)
T ss_dssp EEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT---TSCE-----
T ss_pred EEEEEECCCCCEEEEECCCCCEEEEECCCCEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEECCC---CCEE-----
T ss_conf 03689759986899813776248984476508972567278999958997799986999889997578---7234-----
Q ss_pred CCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 05883456521899910899899991799199999469711221056864556668999996679998779989999948
Q 004581 461 RQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC 540 (744)
Q Consensus 461 ~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~las~~~ 540 (744)
..+..|...+.+++|+|++++|++++.||.|++|++.+++..... . |...+.+++|+|++ .+++++.
T Consensus 997 ~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~-~-----------~~~~v~~~~~~~~~-~l~~~~~ 1063 (1249)
T 3sfz_A 997 SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ-A-----------HQETVKDFRLLQDS-RLLSWSF 1063 (1249)
T ss_dssp EECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCB-C-----------CSSCEEEEEECSSS-EEEEEES
T ss_pred EECCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEE-C-----------CCCCEEEEEECCCC-CEEEEEC
T ss_conf 430367771689999899998999869987999987999668985-2-----------78738999990899-5899978
Q ss_pred CCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 98299999888514789806789863698654999993999936983999996888656110014597461001498846
Q 004581 541 FGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEV 620 (744)
Q Consensus 541 dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~d~~~l~~~~~d~~i~iwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v 620 (744)
|+.|++||+.+++....+.. |...|++++|+| ++++|++++.|+.|++||+.+++. ...+.+|.+.+
T Consensus 1064 dg~v~vwd~~~~~~~~~~~~-~~~~v~~~~~s~-d~~~l~s~s~d~~v~iwd~~~~~~-----------~~~l~~h~~~v 1130 (1249)
T 3sfz_A 1064 DGTVKVWNVITGRIERDFTC-HQGTVLSCAISS-DATKFSSTSADKTAKIWSFDLLSP-----------LHELKGHNGCV 1130 (1249)
T ss_dssp SSEEEEEETTTTCCCEEEEC-CSSCCCCEEECS-SSSSCEEECCSSCCCEECSSSSSC-----------SBCCCCCSSCE
T ss_pred CCCEEEEECCCCCEEEEECC-CCCCEEEEEECC-CCCEEEEECCCCCEEEEECCCCCE-----------EEEECCCCCCE
T ss_conf 89689988898865588746-688489999989-999899984999489987898500-----------12550687767
Q ss_pred EEEEECCCCCCCEEEE-ECCCEEEEEECCC
Q ss_conf 7999579999857999-8584499994899
Q 004581 621 IGLSFSPSPSSSSVII-YSARAMCVIDFGR 649 (744)
Q Consensus 621 ~~i~fspdg~~~~~~~-~~~~~~~~~d~~~ 649 (744)
.+++|+|||+ .++. .....+.++|+..
T Consensus 1131 ~~~~~s~dg~--~lat~~~dg~i~vwd~~~ 1158 (1249)
T 3sfz_A 1131 RCSAFSLDGI--LLATGDDNGEIRIWNVSD 1158 (1249)
T ss_dssp EEEEECSSSS--EEEEEETTSCCCEEESSS
T ss_pred EEEEECCCCC--EEEEEECCCEEEEEECCC
T ss_conf 9999979999--899982899799998899
No 6
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=441.55 Aligned_cols=494 Identities=19% Similarity=0.239 Sum_probs=383.6
Q ss_pred CEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 05389601483125996426998544311145545776336889999987676677999860000123245896998744
Q 004581 26 KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACD 105 (744)
Q Consensus 26 ~~~~~~~~h~~~i~~i~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 105 (744)
+....|++|.+.|+|++|+|||+++|+++. +..+++|+... .....+. ...+......+.+++++||+++.
T Consensus 7 ~e~~~L~GH~~~V~~~a~spdg~~las~~~---d~~v~iWd~~~-----~~~~~l~-gh~~~V~~l~fspdg~~las~~~ 77 (577)
T 2ymu_A 7 KERNRLEAHSSSVRGVAFSPDGQTIASASD---DKTVKLWNRNG-----QLLQTLT-GHSSSVWGVAFSPDGQTIASASD 77 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSCEEEEET---TSEEEEECTTS-----CEEEEEE-CCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEECCCCCCEEEEEECCCCCEEEEEEC---CCEEEEEECCC-----CEEEEEE-CCCCCEEEEEECCCCCEEEEEEC
T ss_conf 894398789985799999899899999938---99899997999-----7899996-89899899999899999999969
Q ss_pred CCEEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEECCC------------
Q ss_conf 97199999507983268401367557489999716999899982899099998668935999981479------------
Q 004581 106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLG------------ 173 (744)
Q Consensus 106 dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~------------ 173 (744)
|+.|++||.. ++.+ ..+.+|.+.|.+++|+|++++|++++.|+.+++|+...... ........
T Consensus 78 d~~i~vWd~~-~~~~---~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~ 152 (577)
T 2ymu_A 78 DKTVKLWNRN-GQLL---QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL-QTLTGHSSSVWGVAFSPDGQ 152 (577)
T ss_dssp TSCEEEEETT-SCEE---EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEE-EEECCCSSCEEEEEECTTSS
T ss_pred CCEEEEEECC-CCEE---EEEECCCCCEEEEEECCCCCEEEEECCCCCEEECCCCCCEE-EECCCCCCCEEEEEEECCCC
T ss_conf 8979999899-9789---99978999889999989999899980798335202355200-11047777435554203776
Q ss_pred ---------------------CCCCCCCEEEEEEEEECCC-EEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECC
Q ss_conf ---------------------9888995259999990599-299983999799972998624898621665325999848
Q 004581 174 ---------------------GLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAP 231 (744)
Q Consensus 174 ---------------------~~~~~~~~~v~~i~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~ 231 (744)
.....+...+.++.++|++ .+++++.|+.|++||.. ++.+..+.+|...|.+++|+|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~s~ 231 (577)
T 2ymu_A 153 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSP 231 (577)
T ss_dssp CEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECT
T ss_pred CCEECCCCCCEECCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECC-CCEEEEEECCCCCEEEEEECC
T ss_conf 3200255531000000000000026877635665416997789998599989999499-968999946889889999979
Q ss_pred CCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99979954379819999810476899988876433111899963231058612344303577899998331112479887
Q 004581 232 SHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREK 311 (744)
Q Consensus 232 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (744)
++.+|++++.|+.|++|+..... +..+.+|...|.+++++ |+++
T Consensus 232 dg~~l~~~~~d~~i~~w~~~~~~------------------~~~~~~~~~~v~~v~~~---------~d~~--------- 275 (577)
T 2ymu_A 232 DGQTIASASDDKTVKLWNRNGQL------------------LQTLTGHSSSVNGVAFR---------PDGQ--------- 275 (577)
T ss_dssp TSSCEEEEETTSCEEEECTTSCE------------------EEEECCCSSCEEEEEEC---------TTSS---------
T ss_pred CCCEEEEEECCCEEEEEECCCCE------------------EEEEECCCCCEEEEEEC---------CCCC---------
T ss_conf 99999999189989999599979------------------99980688987999996---------8999---------
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEE--CCEEEEEEE
Q ss_conf 754443321358973999863898099974676577788655799988840001221331773899992--894799971
Q 004581 312 PIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY--SCRLDILSV 389 (744)
Q Consensus 312 ~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~~~~i~~~ 389 (744)
.+++++.|+.+++|+...... . ....+...+..++|+|++..++++ ++.+++|+.
T Consensus 276 ---------------~l~~~~~d~~i~~w~~~~~~~-~-------~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~ 332 (577)
T 2ymu_A 276 ---------------TIASASDDKTVKLWNRNGQLL-Q-------TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 332 (577)
T ss_dssp ---------------EEEEEETTSCEEEEETTSCEE-E-------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ---------------EEEEEECCCEEEEEECCCCEE-E-------EEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
T ss_conf ---------------999995999799994899589-9-------97068897699999999999999969995999969
Q ss_pred ECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEE-CCCCEEEEEEECCCCCCCEEEEEECCCCCCCC
Q ss_conf 03577456789988787512899983499774999970799999998-39812999962278897227862105883456
Q 004581 390 RLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQ 468 (744)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (744)
... .+.. ...+...+.+++++|++++++++ .++.+++|+... ..+ ..+..|..
T Consensus 333 ~~~----------------~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~----~~~-----~~~~~~~~ 386 (577)
T 2ymu_A 333 NGQ----------------HLQT-LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG----QLL-----QTLTGHSS 386 (577)
T ss_dssp TSC----------------EEEE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC----CEE-----EEEECCSS
T ss_pred CCC----------------EEEE-EECCCCCEEEEEECCCCCEEEEEECCCEEEEECCCC----CEE-----EEECCCCC
T ss_conf 997----------------2578-747889779999989999999996999899990899----789-----98527889
Q ss_pred CCCEEEEEECCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 52189991089989999179919999946971122105686455666899999667999877998999994898299999
Q 004581 469 FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFN 548 (744)
Q Consensus 469 ~v~~i~~spd~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~las~~~dg~i~iwd 548 (744)
.+.+++|+||+++|++++.|+.|++|+. +++.+.++.+ |...|++++|+||+++|++++.|+.|++|+
T Consensus 387 ~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~-----------~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~ 454 (577)
T 2ymu_A 387 SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG-----------HSSSVWGVAFSPDDQTIASASDDKTVKLWN 454 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEEC-----------CSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEECC-----------CCCCEEEEEECCCCCEEEEECCCCEEEEEE
T ss_conf 7489999899999999949998999969-9978989628-----------899757999989999999993999899997
Q ss_pred CCCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 88851478980678986369865499999399993698399999688865611001459746100149884679995799
Q 004581 549 LEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 628 (744)
Q Consensus 549 ~~~~~~~~~~~~~~~~~v~~l~~sp~d~~~l~~~~~d~~i~iwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspd 628 (744)
... +....+.. |...|++++|+| ++++|++++.|+.|++||..+. +...+.+|...|.+++|+||
T Consensus 455 ~~~-~~~~~~~~-~~~~v~~~~~sp-d~~~las~~~d~~i~iw~~~~~------------~~~~~~~h~~~v~~l~~s~d 519 (577)
T 2ymu_A 455 RNG-QLLQTLTG-HSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQ------------LLQTLTGHSSSVRGVAFSPD 519 (577)
T ss_dssp TTS-CEEEEEEC-CSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSC------------EEEEEECCSSCEEEEEECTT
T ss_pred CCC-CEEEEECC-CCCCEEEEEECC-CCCEEEEEECCCEEEEECCCCC------------EEEEEECCCCCEEEEEECCC
T ss_conf 999-88999727-899778999969-9999999919897999939997------------89998679999899999189
Q ss_pred CCCCEEEEECCCEEEEEEC
Q ss_conf 9985799985844999948
Q 004581 629 PSSSSVIIYSARAMCVIDF 647 (744)
Q Consensus 629 g~~~~~~~~~~~~~~~~d~ 647 (744)
|+ ..+.......+.++|.
T Consensus 520 g~-~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 520 GQ-TIASASDDKTVKLWNR 537 (577)
T ss_dssp SS-CEEEEETTSEEEEECT
T ss_pred CC-EEEEEECCCEEEEEEC
T ss_conf 99-9999989699999969
No 7
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=415.85 Aligned_cols=476 Identities=10% Similarity=0.054 Sum_probs=265.0
Q ss_pred CCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999705873399708999765780538960148312599642699854431114554577633688999998767667
Q 004581 1 MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSES 80 (744)
Q Consensus 1 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~i~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (744)
|++.+.+||+|+.||+|++||..+.+....+. |...|.+++|+| +
T Consensus 25 fspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g--------------------------------- 69 (902)
T 2oaj_A 25 FDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-G--------------------------------- 69 (902)
T ss_dssp EETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-T---------------------------------
T ss_pred ECCCCCEEEEEECCCEEEEEECCCCEEEEECC-CCCCEEEEEECC-C---------------------------------
T ss_conf 97999989999297989999689947999868-999779999908-9---------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECC
Q ss_conf 79998600001232458969987449719999950798326840136755748999971699989998289909999866
Q 004581 81 ENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAK 160 (744)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~i~~s~dg~~l~t~~~dg~i~iwd~~ 160 (744)
++|++++.|+.|++||+.+++.+ ..+. |.+.|++++|+|++++|++|+.||.|++||+.
T Consensus 70 -----------------~~L~S~s~D~~v~lWd~~~~~~~---~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~ 128 (902)
T 2oaj_A 70 -----------------IYLVVINAKDTVYVLSLYSQKVL---TTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDID 128 (902)
T ss_dssp -----------------TEEEEEETTCEEEEEETTTCSEE---EEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETT
T ss_pred -----------------CEEEEEECCCEEEEEECCCCCEE---EEEC-CCCCEEEEEECCCCCEEEEECCCCCEEEEECC
T ss_conf -----------------88999989595999989999689---9974-89987999987999989999499929999999
Q ss_pred CCCEEEEEEECC-C---CCCCCCCEEEEEEEEECCC--EEEEECCCCCEEEEECCCCCEEEEEECC--------------
Q ss_conf 893599998147-9---9888995259999990599--2999839997999729986248986216--------------
Q 004581 161 LGYEIYRITVGL-G---GLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFH-------------- 220 (744)
Q Consensus 161 ~~~~~~~~~~~~-~---~~~~~~~~~v~~i~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~h-------------- 220 (744)
++... .+..+. . ....+|...|.+++|+|++ .+++++.|+.| +||+++++++..+..|
T Consensus 129 ~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~ 206 (902)
T 2oaj_A 129 RDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKT 206 (902)
T ss_dssp TTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCT
T ss_pred CCCCC-CCEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCE-EEECCCCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf 99626-5030432100025445789738999766999989999189849-998778965799833557767776544332
Q ss_pred ----CCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEE---E-------------ECC
Q ss_conf ----65325999848999799543798199998104768999888764331118999632---3-------------105
Q 004581 221 ----KGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSV---R-------------AHT 280 (744)
Q Consensus 221 ----~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------------~h~ 280 (744)
...|.+++|+|++.+|++++.|+.|++||+..++.. ....+ . .|.
T Consensus 207 ~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~---------------~~r~l~~~~~~~~~~~~~~~~~~~~ 271 (902)
T 2oaj_A 207 NEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI---------------MARTVFETEINVPQPDYIRDSSTNA 271 (902)
T ss_dssp TSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE---------------EEECSSCSCTTSCCTTCCCCCSSCC
T ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE---------------EEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 3456777689998599999999989993999987899688---------------8885012345787776788885556
Q ss_pred CCCEEEEEECCCCCCCCCCCC-C---------------CCCCC-------------------------------CCCCCC
Q ss_conf 861234430357789999833-1---------------11247-------------------------------988775
Q 004581 281 HDVRALTVAVPISREDPLPED-K---------------VKRSR-------------------------------GREKPI 313 (744)
Q Consensus 281 ~~v~~l~~~~~~~~~~~~~~~-~---------------~~~~~-------------------------------~~~~~~ 313 (744)
..|.+++|++... |++ . +.... ......
T Consensus 272 ~~V~~v~w~~~~~-----pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~ 346 (902)
T 2oaj_A 272 AKISKVYWMCENN-----PEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIV 346 (902)
T ss_dssp CEEEEEEEEECSS-----TTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEE
T ss_pred CCEEEEEEEECCC-----CCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCEE
T ss_conf 7745799973499-----98878999688777788852899954789875554255654664174522787418999547
Q ss_pred CCC--C--CCC--CCCCCCEEEEECCCCEEEEEECCCCCCCCC----C------------------------------CC
Q ss_conf 444--3--321--358973999863898099974676577788----6------------------------------55
Q 004581 314 DFS--Y--HKW--AHLGVPMLISAGDDTKLFAYCANEFTKFSP----H------------------------------EI 353 (744)
Q Consensus 314 ~~~--~--~~w--~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~----~------------------------------~~ 353 (744)
.+. . ..+ ...+...+++++.|+.|++|++.+...... . ..
T Consensus 347 ~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~ 426 (902)
T 2oaj_A 347 NILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQN 426 (902)
T ss_dssp EEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBC
T ss_pred EEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHCCCC
T ss_conf 99997788988677878506999917984899978999855655568985223589724899997499999888860469
Q ss_pred CCCCCCCCCCCCCCEEECCCEEEEEEE--CCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEE------CCCCCEEEEE
Q ss_conf 799988840001221331773899992--89479997103577456789988787512899983------4997749999
Q 004581 354 CPAPQRVPIHLVHNTIFSHTSLLLVQY--SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKS------KASRKIICST 425 (744)
Q Consensus 354 ~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~ 425 (744)
...+...+...+..++|+|++.+++++ ++.+++|++....... . ....... .|...+.+++
T Consensus 427 ~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~----------~-~~~~~~l~~~~~~~h~~~V~sva 495 (902)
T 2oaj_A 427 KDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD----------N-ASFEVNLSRTLNKAKELAVDKIS 495 (902)
T ss_dssp CCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT----------T-BCEEEEHHHHTTCSSSCCEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCC----------C-CEEEEECHHHCCCCCCCCEEEEE
T ss_conf 997545785778753336667589996589838999787764567----------7-36775015413778887646999
Q ss_pred ECCCCCEEEEE-CCCCEEEEEEECCCCC---------C---------------CEEE-------------EEECCCCCCC
Q ss_conf 70799999998-3981299996227889---------7---------------2278-------------6210588345
Q 004581 426 ISNSGMLFAYS-DHVKPSLFELKKGKVG---------Q---------------GEWI-------------INKRQLPRKL 467 (744)
Q Consensus 426 ~s~~g~~la~~-~~~~i~i~~~~~~~~~---------~---------------~~~~-------------~~~~~~~~~~ 467 (744)
|+|++++||++ .++.|++|++..+... . .... .....+..|.
T Consensus 496 fspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~ 575 (902)
T 2oaj_A 496 FAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANK 575 (902)
T ss_dssp EETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCS
T ss_pred ECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 63899969999458579999924865557545577866511345513467965432242368988777601469998688
Q ss_pred CCCCEEEEEECCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCC-CCCCCEEEEEEC-----CCC---CEEEEE
Q ss_conf 65218999108998999917991999994697112210568645566689-999966799987-----799---899999
Q 004581 468 QFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQ-PSEPPITKMFTS-----SDG---QWLAAV 538 (744)
Q Consensus 468 ~~v~~i~~spd~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~s-----~dg---~~las~ 538 (744)
..|++++||||| +||+|+.|+.|++||+.+...+..... .... .|...|++++|| ||| ++|+++
T Consensus 576 ~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~------~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sg 648 (902)
T 2oaj_A 576 GKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENI------REISGAQSACVTCIEFVIMEYGDDGYSSILMVCG 648 (902)
T ss_dssp CSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEG------GGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEE
T ss_pred CCEEEEEECCCC-EEEEEECCCCEEEEECCCCEEEEEEEH------HHHCCCCCCCEEEEEEEEEECCCCCCCCEEEEEE
T ss_conf 867799964876-899995897699998889839997024------6726466661399999998417898763389999
Q ss_pred ECCCCEEEEEC---CCCCEEEEEECC----CCCCEEEEE-EC
Q ss_conf 48982999998---885147898067----898636986-54
Q 004581 539 NCFGDVYIFNL---EIQRQHWFISRL----EGASVTAAG-FP 572 (744)
Q Consensus 539 ~~dg~i~iwd~---~~~~~~~~~~~~----~~~~v~~l~-~s 572 (744)
+.|++|++|++ .+++....+..+ |..+|..++ |+
T Consensus 649 s~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~ 690 (902)
T 2oaj_A 649 TDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFS 690 (902)
T ss_dssp ETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEE
T ss_pred ECCCCEEEEEEECCCCCCEEEEECCCEECCCCCCEEEEEEEE
T ss_conf 568739999995589986899966724407889647998586
No 8
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=409.64 Aligned_cols=522 Identities=12% Similarity=0.064 Sum_probs=329.9
Q ss_pred CCCCCCEEEEECCCCEEEEEECCCC----CEEEEEECCCCC-EEEEEECC--CCCCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 9999970587339970899976578----053896014831-25996426--998544311145545776336889999-
Q 004581 1 MGLPGGRLFSSSIDGSVSEWDLYDL----KQKIVLQSIDFS-IWQMAVAP--SNSSLMHAVTNSDHIGNGYLNDKSNDS- 72 (744)
Q Consensus 1 ~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~~~-i~~i~~sp--~~~~~~~~~~~~~~~~~~~~~~~~~~~- 72 (744)
|++.+.+|++++ ++.|.+||+.++ +....+.+|... |.+++|+| +++++++++.+ ..+.+|+......
T Consensus 26 ~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~d---g~v~vw~~~~~~~~ 101 (615)
T 1pgu_A 26 YDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDES---GKVIVWGWTFDKES 101 (615)
T ss_dssp EETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETT---SEEEEEEEEEEGGG
T ss_pred ECCCCCEEEEEC-CCEEEEEECCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCEEEEECCC---CEEEEEECCCCCCC
T ss_conf 889999799935-98499997778877651431880578844999997967899889996489---87999768887655
Q ss_pred ---CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC----CEEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCC-E
Q ss_conf ---9876766779998600001232458969987449----7199999507983268401367557489999716999-8
Q 004581 73 ---DDHETSESENDSDSDELHEQSVVEDRRVALACDD----GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN-M 144 (744)
Q Consensus 73 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~V~~i~~s~dg~-~ 144 (744)
........ .............+++++|++++.+ +.|++|+. +..+ ..+.+|...|.+++|+|+++ .
T Consensus 102 ~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~~~~---~~~~~~~~~v~~~~~~~~~~~~ 175 (615)
T 1pgu_A 102 NSVEVNVKSEF-QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--GNSL---GEVSGHSQRINACHLKQSRPMR 175 (615)
T ss_dssp TEEEEEEEEEE-ECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT--CCEE---EECCSCSSCEEEEEECSSSSCE
T ss_pred CCCCCCCCCHH-HCCCCCEEEEEEECCCCEEEEECCCCCCCCEEEEEEC--CCCC---EEEECCCCCEEEEEECCCCCCE
T ss_conf 44554200011-1256637999990799989993168777557999978--9810---3130677438899988789968
Q ss_pred EEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCCCE---EEEEEEEECC-C-EEEEECCCCCEEEEECCCCCEEEEE-E
Q ss_conf 9998289909999866893599998147998889952---5999999059-9-2999839997999729986248986-2
Q 004581 145 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPEL---CIWSLLSLRC-G-TLVSADSTGSVQFWDSRHGTLLQAH-S 218 (744)
Q Consensus 145 l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~v~~i~~~~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~-~ 218 (744)
+++++.|+.|++||+.+++.+..+. .|.. .|.+++|+|+ + ++++++.|+.|++||+.+++.+..+ .
T Consensus 176 l~~~~~d~~v~vwd~~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 247 (615)
T 1pgu_A 176 SMTVGDDGSVVFYQGPPFKFSASDR--------THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIED 247 (615)
T ss_dssp EEEEETTTEEEEEETTTBEEEEEEC--------SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCB
T ss_pred EEEEECCCCEEEEECCCCCEEEEEC--------CCCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCEEEEECC
T ss_conf 9999579959999699961013202--------56777742899997897788899986898089998999978589525
Q ss_pred ---CCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEC----CCCCEEEEEECC
Q ss_conf ---1665325999848999799543798199998104768999888764331118999632310----586123443035
Q 004581 219 ---FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAH----THDVRALTVAVP 291 (744)
Q Consensus 219 ---~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~~~~ 291 (744)
.|...|.+++|+ ++.++++++.|+.|++|++..+. ....+..+ ...+.++.+
T Consensus 248 ~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~--- 306 (615)
T 1pgu_A 248 DQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSK-----------------CVQKWTLDKQQLGNQQVGVVA--- 306 (615)
T ss_dssp TTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTE-----------------EEEEEECCTTCGGGCEEEEEE---
T ss_pred CCCCCCCCEEEEEEC-CCCEEEEECCCCCEEEEECCCCC-----------------EEEEECCCCCCCCCCEEEEEE---
T ss_conf 444567755899981-89979998489948999788892-----------------787884787754571469991---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 77899998331112479887754443321358973999863898099974676577788655799988840001221331
Q 004581 292 ISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFS 371 (744)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 371 (744)
+++ ..+++++.|+.+++|++......... ..+...+..++|
T Consensus 307 -------~~~------------------------~~l~~~~~~g~i~~~d~~~~~~~~~~-------~~~~~~v~~~~~- 347 (615)
T 1pgu_A 307 -------TGN------------------------GRIISLSLDGTLNFYELGHDEVLKTI-------SGHNKGITALTV- 347 (615)
T ss_dssp -------EET------------------------TEEEEEETTSCEEEEETTEEEEEEEE-------CCCSSCEEEEET-
T ss_pred -------CCC------------------------CEEEEEECCCCEEEEECCCCCEEEEE-------ECCCCCEEEEEE-
T ss_conf -------899------------------------76999978997899988899288999-------477787899995-
Q ss_pred CCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEEECCC-
Q ss_conf 7738999928947999710357745678998878751289998349977499997079999999839812999962278-
Q 004581 372 HTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGK- 450 (744)
Q Consensus 372 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~i~~~~~~~- 450 (744)
|+ .+....++.+.+|++. .+. ..|...+.+++++++..+++.+.++.+++|++....
T Consensus 348 ~~-l~~~~~dg~i~~w~~~------------------~~~---~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~ 405 (615)
T 1pgu_A 348 NP-LISGSYDGRIMEWSSS------------------SMH---QDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEF 405 (615)
T ss_dssp TT-TEEEETTSCEEETTTT------------------EEE---CCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEEC
T ss_pred CC-CEEECCCCEEEEEECH------------------HHC---CCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCCC
T ss_conf 67-4898799959998752------------------415---7556851799978986799995899799988666763
Q ss_pred ---------------------CCCCEEEEEEC---CCCCCCCCCCEEEEEECCCEEEEEEC-CCCEEEEECCCCCEE-EE
Q ss_conf ---------------------89722786210---58834565218999108998999917-991999994697112-21
Q 004581 451 ---------------------VGQGEWIINKR---QLPRKLQFAHSMIFSYDSSQLIIAGH-DRRIYVVDVSSSELL-HT 504 (744)
Q Consensus 451 ---------------------~~~~~~~~~~~---~~~~~~~~v~~i~~spd~~~l~~~~~-dg~i~i~d~~~~~~~-~~ 504 (744)
....+|+.... ....+...+.+++|+ +++|++++. |+.|++|++.+++.. ..
T Consensus 406 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~ 483 (615)
T 1pgu_A 406 GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDL 483 (615)
T ss_dssp SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCEEEEECCCCEEEEECCCCCEEEECCCCCCCEEEEEC--CCEEEEEECCCCEEEEEECCCCCCCCCC
T ss_conf 67846999828987899967982699944678665551567872077883--8889996568986999988885435333
Q ss_pred ECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEEEECCC---------C
Q ss_conf 0568645566689999966799987799899999489829999988851478980678986369865499---------9
Q 004581 505 FTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQ---------N 575 (744)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~---------d 575 (744)
+.. |...|++++|+|++++|++++.||.|++|++.+++....+...|...|++++|+|. +
T Consensus 484 ~~~-----------~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~ 552 (615)
T 1pgu_A 484 KTP-----------LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE 552 (615)
T ss_dssp SSC-----------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCS
T ss_pred CCC-----------CCCCEEEEEECCCCCEEEECCCCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 677-----------657507999989999899817998599865777762467604788714699976832345332468
Q ss_pred CCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCEEEEEEC
Q ss_conf 993999936983999996888656110014597461001498846799957999985799985844999948
Q 004581 576 NNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDF 647 (744)
Q Consensus 576 ~~~l~~~~~d~~i~iwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~~~~~d~ 647 (744)
+++|++++.|+.|++|++.++. .+...+.+|...|.+++|+|||. .+.......+.+.++
T Consensus 553 ~~~l~~~~~dg~i~iw~~~~~~----------~~~~~~~~h~~~v~~l~~s~~~~--l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 553 EDLVATGSLDTNIFIYSVKRPM----------KIIKALNAHKDGVNNLLWETPST--LVSSGADACIKRWNV 612 (615)
T ss_dssp CCEEEEEETTSCEEEEESSCTT----------CCEEETTSSTTCEEEEEEEETTE--EEEEETTSCEEEEEE
T ss_pred CCEEEEECCCCCEEEEECCCCC----------EECHHHHCCCCCEEEEEECCCCC--EEEECCCCEEEEEEE
T ss_conf 8889998179719999778885----------40311335943058999738997--288459963999960
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=398.61 Aligned_cols=500 Identities=15% Similarity=0.087 Sum_probs=324.0
Q ss_pred CCCEEEEECCCCEEEEEECCCC--------CEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCC
Q ss_conf 9970587339970899976578--------0538960148312599642699854431114554-577633688999998
Q 004581 4 PGGRLFSSSIDGSVSEWDLYDL--------KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDH-IGNGYLNDKSNDSDD 74 (744)
Q Consensus 4 ~~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~h~~~i~~i~~sp~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 74 (744)
.+.+|++++.||.|++||+.++ +.+..+..|...|.+++|+|+++++++++.+.+. ..+..|+ ...
T Consensus 77 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d-~~~---- 151 (615)
T 1pgu_A 77 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD-SGN---- 151 (615)
T ss_dssp TCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT-TCC----
T ss_pred CCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCCCEEEEECCCCCCCCEEEEEE-CCC----
T ss_conf 998899964898799976888765544554200011125663799999079998999316877755799997-898----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-EEEEEECCCEEEEEEECCCCCEEEEECCCCCCC---CEEEEEEECC-CCEEEEEE
Q ss_conf 767667799986000012324589-699874497199999507983268401367557---4899997169-99899982
Q 004581 75 HETSESENDSDSDELHEQSVVEDR-RVALACDDGCVRIYRITDSDELIYHRSLPRVSG---RVLSVTWSAD-GNMLYSGS 149 (744)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~-~la~~~~dg~i~iwd~~~~~~~~~~~~l~~h~~---~V~~i~~s~d-g~~l~t~~ 149 (744)
...... ........+...++++ .+++++.|+.|++||+...+.+ ..+.+|.. .|.+++|+|+ +++|++++
T Consensus 152 -~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 226 (615)
T 1pgu_A 152 -SLGEVS-GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS---ASDRTHHKQGSFVRDVEFSPDSGEFVITVG 226 (615)
T ss_dssp -EEEECC-SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE---EEECSSSCTTCCEEEEEECSTTCCEEEEEE
T ss_pred -CCEEEE-CCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCEE---EEECCCCCCCCEEEEEEECCCCCCEEEEEE
T ss_conf -103130-677438899988789968999957995999969996101---320256777742899997897788899986
Q ss_pred CCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEECCC-EEEEECCCCCEEEEECCCCCEEEEEECC----CCCE
Q ss_conf 8990999986689359999814799888995259999990599-2999839997999729986248986216----6532
Q 004581 150 SDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFH----KGDV 224 (744)
Q Consensus 150 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h----~~~v 224 (744)
.|+.|++||+.+++.+..+... ...|...|.++.|+ ++ .+++++.|+.|++||+.+++.+..+..+ ...+
T Consensus 227 ~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 301 (615)
T 1pgu_A 227 SDRKISCFDGKSGEFLKYIEDD----QEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 301 (615)
T ss_dssp TTCCEEEEETTTCCEEEECCBT----TBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCE
T ss_pred CCCEEEEEECCCCCEEEEECCC----CCCCCCCEEEEEEC-CCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCE
T ss_conf 8980899989999785895254----44567755899981-899799984899489997888927878847877545714
Q ss_pred EEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 59998489997995437981999981047689998887643311189996323105861234430357789999833111
Q 004581 225 NALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVK 304 (744)
Q Consensus 225 ~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~ 304 (744)
.++.|. ++.++++++.|+.|++|++.... ....+.+|...|.++++ +. -...+.++.+.
T Consensus 302 ~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~-----------------~~~~~~~~~~~v~~~~~-~~--l~~~~~dg~i~ 360 (615)
T 1pgu_A 302 VGVVAT-GNGRIISLSLDGTLNFYELGHDE-----------------VLKTISGHNKGITALTV-NP--LISGSYDGRIM 360 (615)
T ss_dssp EEEEEE-ETTEEEEEETTSCEEEEETTEEE-----------------EEEEECCCSSCEEEEET-TT--TEEEETTSCEE
T ss_pred EEEEEC-CCCEEEEEECCCCEEEEECCCCC-----------------EEEEEECCCCCEEEEEE-CC--CEEECCCCEEE
T ss_conf 699918-99769999789978999888992-----------------88999477787899995-67--48987999599
Q ss_pred CCCCCC-----CCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEE
Q ss_conf 247988-----775444332135897399986389809997467657778865579998884000122133177389999
Q 004581 305 RSRGRE-----KPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ 379 (744)
Q Consensus 305 ~~~~~~-----~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 379 (744)
++... .........| +.+..+++++.|+.+++|++....... .+..++++|++.+++.
T Consensus 361 -~w~~~~~~~~~~~~v~~~~~--~~~~~l~~~~~d~~i~~~~~~~~~~~~--------------~~~~~~~s~~~~~~~~ 423 (615)
T 1pgu_A 361 -EWSSSSMHQDHSNLIVSLDN--SKAQEYSSISWDDTLKVNGITKHEFGS--------------QPKVASANNDGFTAVL 423 (615)
T ss_dssp -ETTTTEEECCCCSCEEEEEC--CSTTCCEEEETTTEEEETTEEEEECSS--------------CEEEEEECSSSEEEEE
T ss_pred -EEECHHHCCCCCCCEEEEEE--CCCCEEEEEECCCCEEEEECCCCCCCC--------------CCEEEEECCCCCEEEE
T ss_conf -98752415755685179997--898679999589979998866676367--------------8469998289878999
Q ss_pred E-CCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEE-C-CCCEEEEEEECCCCCCCEE
Q ss_conf 2-89479997103577456789988787512899983499774999970799999998-3-9812999962278897227
Q 004581 380 Y-SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-D-HVKPSLFELKKGKVGQGEW 456 (744)
Q Consensus 380 ~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~-~~~i~i~~~~~~~~~~~~~ 456 (744)
+ .+.+.+|++.... .+..+. +...+.+++++ +++++++ . ++.+++|++... ..
T Consensus 424 ~~~~~~~~~~~~~~~---------------~~~~~~--~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~---~~-- 479 (615)
T 1pgu_A 424 TNDDDLLILQSFTGD---------------IIKSVR--LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDL---EV-- 479 (615)
T ss_dssp ETTSEEEEEETTTCC---------------EEEEEE--CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEE---EE--
T ss_pred ECCCCEEEEECCCCC---------------EEEECC--CCCCCEEEEEC--CCEEEEEECCCCEEEEEECCCC---CC--
T ss_conf 679826999446786---------------655515--67872077883--8889996568986999988885---43--
Q ss_pred EEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECC------
Q ss_conf 86210588345652189991089989999179919999946971122105686455666899999667999877------
Q 004581 457 IINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSS------ 530 (744)
Q Consensus 457 ~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~------ 530 (744)
.. ..+..|...+.+++|+|++++|++++.||.|++|++.+++.+..+.+. |...|++++|+|
T Consensus 480 -~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----------h~~~v~~~~~sp~~~~~~ 547 (615)
T 1pgu_A 480 -SF-DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF----------RTSKINAISWKPAEKGAN 547 (615)
T ss_dssp -EE-ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC----------CSSCEEEEEECCCC----
T ss_pred -CC-CCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEEECCCCCCEEEEECC----------CCCCEEEEEECCCCCCCC
T ss_conf -53-336776575079999899998998179985998657777624676047----------887146999768323453
Q ss_pred ----CCCEEEEEECCCCEEEEECCCC-CEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCC
Q ss_conf ----9989999948982999998885-1478980678986369865499999399993698399999688
Q 004581 531 ----DGQWLAAVNCFGDVYIFNLEIQ-RQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 595 (744)
Q Consensus 531 ----dg~~las~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~l~~sp~d~~~l~~~~~d~~i~iwd~~~ 595 (744)
++++||+++.||.|++|+++++ +....+ ..|...|++++|+| ++. |++++.|+.|++|+++.
T Consensus 548 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~h~~~v~~l~~s~-~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 548 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL-NAHKDGVNNLLWET-PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp --CCSCCEEEEEETTSCEEEEESSCTTCCEEET-TSSTTCEEEEEEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred CCCCCCCEEEEECCCCCEEEEECCCCCEECHHH-HCCCCCEEEEEECC-CCC-EEEECCCCEEEEEEEEC
T ss_conf 324688889998179719999778885403113-35943058999738-997-28845996399996015
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=393.61 Aligned_cols=490 Identities=12% Similarity=0.055 Sum_probs=309.4
Q ss_pred EECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEE
Q ss_conf 60148312599642699854431114554577633688999998767667799986000012324589699874497199
Q 004581 31 LQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVR 110 (744)
Q Consensus 31 ~~~h~~~i~~i~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~ 110 (744)
..+|...|++++|+|++ ++||+|+.||.|+
T Consensus 13 ~~gh~~~V~~lafspdg--------------------------------------------------~~lAsgs~Dg~I~ 42 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQ--------------------------------------------------NLLAIATVTGEVH 42 (902)
T ss_dssp EEECSSCEEEEEEETTT--------------------------------------------------TEEEEEETTSEEE
T ss_pred CCCCCCCCEEEEECCCC--------------------------------------------------CEEEEEECCCEEE
T ss_conf 16889984899997999--------------------------------------------------9899992979899
Q ss_pred EEEECCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEEC
Q ss_conf 99950798326840136755748999971699989998289909999866893599998147998889952599999905
Q 004581 111 IYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLR 190 (744)
Q Consensus 111 iwd~~~~~~~~~~~~l~~h~~~V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 190 (744)
||+....+.. ..+ .|...|.+++|+| +++|++++.|++|++||+.+++.+..+. +...|++++|+|
T Consensus 43 lw~~~~~~~~---~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~---------~~~~V~~v~~sp 108 (902)
T 2oaj_A 43 IYGQQQVEVV---IKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF---------VPGKITSIDTDA 108 (902)
T ss_dssp EECSTTCEEE---EEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE---------CSSCEEEEECCT
T ss_pred EEECCCCEEE---EEC-CCCCCEEEEEECC-CCEEEEEECCCEEEEEECCCCCEEEEEC---------CCCCEEEEEECC
T ss_conf 9968994799---986-8999779999908-9889999895959999899996899974---------899879999879
Q ss_pred CC-EEEEECCCCCEEEEECCCCCEE-----------EEEECCCCCEEEEEECCC-CCEEEEECCCCEEEEEECCCCCCCC
Q ss_conf 99-2999839997999729986248-----------986216653259998489-9979954379819999810476899
Q 004581 191 CG-TLVSADSTGSVQFWDSRHGTLL-----------QAHSFHKGDVNALAAAPS-HNRVFSTGSDGQVILYKASCESIGP 257 (744)
Q Consensus 191 ~~-~l~s~~~dg~i~iwd~~~~~~~-----------~~~~~h~~~v~~l~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~ 257 (744)
++ ++++|+.||.|++||++++++. ..+.+|.+.|.+++|+|+ +..+++++.|+.| +||+.....
T Consensus 109 ~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~-- 185 (902)
T 2oaj_A 109 SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI-- 185 (902)
T ss_dssp TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE--
T ss_pred CCCEEEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCE-EEECCCCCE--
T ss_conf 99989999499929999999996265030432100025445789738999766999989999189849-998778965--
Q ss_pred CCCCCCCCCCCEEEEEEEEEE------------------CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 988876433111899963231------------------05861234430357789999833111247988775444332
Q 004581 258 NDGLSSSEVIKKWIYVGSVRA------------------HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHK 319 (744)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~------------------h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (744)
...+.. |...|.+++|+ |++.
T Consensus 186 ---------------~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs---------pdg~----------------- 224 (902)
T 2oaj_A 186 ---------------KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH---------PNSL----------------- 224 (902)
T ss_dssp ---------------EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC---------TTSS-----------------
T ss_pred ---------------EEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEC---------CCCC-----------------
T ss_conf ---------------79983355776777654433234567776899985---------9999-----------------
Q ss_pred CCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCC----CC-----CCC--CCCCCCCCEEEC----CCE-EEEEEEC--
Q ss_conf 13589739998638980999746765777886557----99-----988--840001221331----773-8999928--
Q 004581 320 WAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEIC----PA-----PQR--VPIHLVHNTIFS----HTS-LLLVQYS-- 381 (744)
Q Consensus 320 w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~----~~-----~~~--~~~~~v~~~~~s----~~~-~~l~~~~-- 381 (744)
+|++++.|+.|++||+.+.+........ .. +.. .+...+..++|+ |++ .++++++
T Consensus 225 -------~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~ 297 (902)
T 2oaj_A 225 -------HIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI 297 (902)
T ss_dssp -------EEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred -------EEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCC
T ss_conf -------9999989993999987899688888501234578777678888555677457999734999887899968877
Q ss_pred -----CEEEEEEEECCCCCCCCCCCC---C-CCCCCEEEEEEECCCCCEEEEEECC----------CCCEEEE-ECCCCE
Q ss_conf -----947999710357745678998---8-7875128999834997749999707----------9999999-839812
Q 004581 382 -----CRLDILSVRLENNVESRSSSG---G-HASTSLLVQVKSKASRKIICSTISN----------SGMLFAY-SDHVKP 441 (744)
Q Consensus 382 -----~~~~i~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~i~~~~~s~----------~g~~la~-~~~~~i 441 (744)
..+.+|++....... ..... . ...++....+...+...+..+.+.+ +...+++ +.++.+
T Consensus 298 ~~~~~~~v~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l 376 (902)
T 2oaj_A 298 SRGDNQSLTMIDLGYTPRYS-ITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEI 376 (902)
T ss_dssp TTSSCCCEEEEEEEECCCGG-GCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCE
T ss_pred CCCCCCEEEEEECCCCCCCC-CCCHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCE
T ss_conf 77888528999547898755-54255654664174522787418999547999977889886778785069999179848
Q ss_pred EEEEEECCCCCCC--------------EEE--E-----------------EECCCCCCCCCCCEEEEEECCCEEEEEECC
Q ss_conf 9999622788972--------------278--6-----------------210588345652189991089989999179
Q 004581 442 SLFELKKGKVGQG--------------EWI--I-----------------NKRQLPRKLQFAHSMIFSYDSSQLIIAGHD 488 (744)
Q Consensus 442 ~i~~~~~~~~~~~--------------~~~--~-----------------~~~~~~~~~~~v~~i~~spd~~~l~~~~~d 488 (744)
++|++..+..... +.. . ....+.+|...+..++|+||+++|++++.|
T Consensus 377 ~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~D 456 (902)
T 2oaj_A 377 ETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSN 456 (902)
T ss_dssp EEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETT
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 99978999855655568985223589724899997499999888860469997545785778753336667589996589
Q ss_pred CCEEEEECCCCCEEE--EECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC-------------
Q ss_conf 919999946971122--10568645566689999966799987799899999489829999988851-------------
Q 004581 489 RRIYVVDVSSSELLH--TFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQR------------- 553 (744)
Q Consensus 489 g~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~las~~~dg~i~iwd~~~~~------------- 553 (744)
++|++||+.++.+.. .+.... .......|...|++++|+||+++||+++.||+|++|++.+++
T Consensus 457 gtVrlWd~~~g~~~~~~~~~~~l--~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~ 534 (902)
T 2oaj_A 457 GSVRIYDASHGDIQDNASFEVNL--SRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDL 534 (902)
T ss_dssp SEEEEEESSCCTTTTTBCEEEEH--HHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC------------
T ss_pred CCEEEEECCCCCCCCCCEEEEEC--HHHCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 83899978776456773677501--5413778887646999638999699994585799999248655575455778665
Q ss_pred --------------------------------EEEEEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCCC
Q ss_conf --------------------------------478980678986369865499999399993698399999688865611
Q 004581 554 --------------------------------QHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEW 601 (744)
Q Consensus 554 --------------------------------~~~~~~~~~~~~v~~l~~sp~d~~~l~~~~~d~~i~iwd~~~~~~~~w 601 (744)
+...+.. |...|++++|+| || +||+++.|++|++||++++.+..
T Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~- 610 (902)
T 2oaj_A 535 EMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA-NKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIY- 610 (902)
T ss_dssp ---CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC-CSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEE-
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC-CCCCEEEEEECC-CC-EEEEEECCCCEEEEECCCCEEEE-
T ss_conf 113455134679654322423689887776014699986-888677999648-76-89999589769999888983999-
Q ss_pred CCCCCCCCCCCCC-CCCCCEEEEEEC-----CCCCCCEEEEE--CCCEEEEEEC
Q ss_conf 0014597461001-498846799957-----99998579998--5844999948
Q 004581 602 SMQHTFVLPRRYQ-EFPGEVIGLSFS-----PSPSSSSVIIY--SARAMCVIDF 647 (744)
Q Consensus 602 s~~~~~~~~~~~~-~~~~~v~~i~fs-----pdg~~~~~~~~--~~~~~~~~d~ 647 (744)
. .....+. +|...|++++|+ |||...+.++. ....+.++|+
T Consensus 611 -~----~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 611 -M----ENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp -E----EEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred -E----EEHHHHCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEE
T ss_conf -7----024672646666139999999841789876338999956873999999
Done!