Query 004582
Match_columns 744
No_of_seqs 473 out of 2665
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 01:45:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004582.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004582hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 99.9 1.6E-25 3.4E-30 277.9 27.1 271 421-696 15-313 (2102)
2 KOG4224 Armadillo repeat prote 99.9 2.4E-25 5.3E-30 229.6 16.3 265 424-694 131-404 (550)
3 PLN03200 cellulose synthase-in 99.9 4.6E-24 1E-28 265.0 27.4 276 419-700 446-769 (2102)
4 KOG4224 Armadillo repeat prote 99.9 3.9E-23 8.6E-28 213.4 17.5 265 424-695 171-446 (550)
5 KOG0166 Karyopherin (importin) 99.9 4.4E-22 9.6E-27 219.4 21.5 273 419-696 109-394 (514)
6 PF04564 U-box: U-box domain; 99.9 9.7E-23 2.1E-27 171.2 5.4 72 261-332 1-72 (73)
7 KOG0166 Karyopherin (importin) 99.9 5.1E-20 1.1E-24 203.2 23.9 275 419-697 152-438 (514)
8 COG5064 SRP1 Karyopherin (impo 99.8 1.5E-19 3.2E-24 185.7 18.7 272 420-695 72-398 (526)
9 COG5064 SRP1 Karyopherin (impo 99.8 4.2E-19 9.2E-24 182.3 17.1 271 419-694 157-442 (526)
10 PF05804 KAP: Kinesin-associat 99.7 8.8E-17 1.9E-21 186.6 22.2 224 464-697 253-481 (708)
11 PF05804 KAP: Kinesin-associat 99.7 3.4E-16 7.5E-21 181.7 24.6 272 420-697 291-651 (708)
12 smart00504 Ubox Modified RING 99.7 2.5E-17 5.5E-22 134.5 5.4 63 264-327 1-63 (63)
13 KOG1048 Neural adherens juncti 99.6 8.2E-14 1.8E-18 158.7 23.6 269 419-693 233-682 (717)
14 KOG4199 Uncharacterized conser 99.6 7E-13 1.5E-17 137.0 22.8 261 429-694 157-443 (461)
15 KOG4199 Uncharacterized conser 99.4 1.8E-11 4E-16 126.7 20.5 260 429-695 117-403 (461)
16 PF04826 Arm_2: Armadillo-like 99.4 1.4E-11 3.1E-16 128.1 16.2 183 420-611 13-204 (254)
17 KOG2122 Beta-catenin-binding p 99.4 5.5E-12 1.2E-16 148.6 14.4 259 438-698 317-604 (2195)
18 PF04826 Arm_2: Armadillo-like 99.3 7.2E-11 1.6E-15 122.9 18.5 193 502-700 8-210 (254)
19 PF10508 Proteasom_PSMB: Prote 99.2 2.6E-09 5.7E-14 122.7 25.2 266 423-694 81-365 (503)
20 KOG1048 Neural adherens juncti 99.2 5.8E-10 1.3E-14 127.6 19.2 243 419-667 275-697 (717)
21 KOG2122 Beta-catenin-binding p 99.1 1.8E-10 3.9E-15 136.2 12.0 274 422-695 238-559 (2195)
22 cd00020 ARM Armadillo/beta-cat 99.1 5.2E-10 1.1E-14 102.2 12.4 114 539-653 2-120 (120)
23 cd00020 ARM Armadillo/beta-cat 99.1 2.4E-09 5.2E-14 97.8 14.5 114 580-694 2-119 (120)
24 KOG1222 Kinesin associated pro 99.1 1.2E-08 2.6E-13 110.1 21.4 265 424-693 309-661 (791)
25 PF15227 zf-C3HC4_4: zinc fing 99.1 8.2E-11 1.8E-15 87.5 3.5 39 267-305 1-42 (42)
26 PLN03208 E3 ubiquitin-protein 99.0 1.7E-10 3.6E-15 112.8 4.9 61 259-319 13-88 (193)
27 KOG4642 Chaperone-dependent E3 98.9 4.7E-10 1E-14 111.9 3.8 77 258-334 205-281 (284)
28 TIGR00599 rad18 DNA repair pro 98.9 1.2E-09 2.7E-14 119.1 6.3 70 260-330 22-91 (397)
29 KOG1222 Kinesin associated pro 98.8 2E-08 4.4E-13 108.3 11.6 195 479-675 277-476 (791)
30 PF11789 zf-Nse: Zinc-finger o 98.8 1.4E-09 3.1E-14 86.2 2.1 44 263-306 10-55 (57)
31 PF10508 Proteasom_PSMB: Prote 98.8 3.6E-07 7.9E-12 105.1 20.6 264 424-696 43-320 (503)
32 PF03224 V-ATPase_H_N: V-ATPas 98.7 2.8E-07 6.2E-12 99.7 16.7 218 420-644 59-305 (312)
33 KOG0168 Putative ubiquitin fus 98.7 5.3E-07 1.1E-11 103.4 18.9 250 421-678 169-438 (1051)
34 cd00256 VATPase_H VATPase_H, r 98.7 7.2E-07 1.6E-11 99.0 19.5 270 421-693 103-423 (429)
35 PF13923 zf-C3HC4_2: Zinc fing 98.7 1E-08 2.2E-13 75.2 3.0 38 267-305 1-39 (39)
36 KOG4500 Rho/Rac GTPase guanine 98.6 1E-06 2.2E-11 94.6 17.4 267 426-693 94-473 (604)
37 PF03224 V-ATPase_H_N: V-ATPas 98.6 5.9E-07 1.3E-11 97.3 16.0 246 440-688 31-307 (312)
38 KOG4500 Rho/Rac GTPase guanine 98.6 1E-06 2.2E-11 94.6 15.9 255 440-694 244-518 (604)
39 PRK09687 putative lyase; Provi 98.6 3E-06 6.4E-11 90.2 18.6 229 420-691 24-278 (280)
40 PF13445 zf-RING_UBOX: RING-ty 98.5 3.9E-08 8.5E-13 73.2 2.1 36 267-303 1-43 (43)
41 PF00097 zf-C3HC4: Zinc finger 98.5 1.3E-07 2.8E-12 70.1 3.3 39 267-305 1-41 (41)
42 KOG0287 Postreplication repair 98.3 2.3E-07 5E-12 96.0 2.7 68 261-329 20-87 (442)
43 PF13920 zf-C3HC4_3: Zinc fing 98.3 4.4E-07 9.5E-12 70.4 3.1 47 263-310 1-48 (50)
44 KOG0823 Predicted E3 ubiquitin 98.3 3.7E-07 7.9E-12 91.0 3.0 58 262-319 45-104 (230)
45 PF14835 zf-RING_6: zf-RING of 98.3 2.3E-07 5.1E-12 73.8 1.3 58 264-324 7-65 (65)
46 PHA02929 N1R/p28-like protein; 98.3 6.7E-07 1.5E-11 91.5 4.1 48 262-310 172-227 (238)
47 PRK13800 putative oxidoreducta 98.3 7.6E-05 1.6E-09 92.1 22.8 221 420-693 622-865 (897)
48 KOG0946 ER-Golgi vesicle-tethe 98.2 0.00014 2.9E-09 83.7 22.5 271 419-696 22-347 (970)
49 KOG2042 Ubiquitin fusion degra 98.2 1.4E-06 2.9E-11 103.1 5.9 73 258-331 864-937 (943)
50 KOG2177 Predicted E3 ubiquitin 98.2 9.8E-07 2.1E-11 94.3 3.9 69 261-332 10-78 (386)
51 PRK13800 putative oxidoreducta 98.2 9.8E-05 2.1E-09 91.1 20.8 221 421-692 654-896 (897)
52 cd00162 RING RING-finger (Real 98.2 1.8E-06 4E-11 64.4 3.6 44 266-309 1-45 (45)
53 PRK09687 putative lyase; Provi 98.2 3.3E-05 7.2E-10 82.2 14.5 191 461-693 23-219 (280)
54 COG5113 UFD2 Ubiquitin fusion 98.1 5.8E-06 1.2E-10 92.1 8.3 75 256-331 846-921 (929)
55 KOG2160 Armadillo/beta-catenin 98.1 9.2E-05 2E-09 79.1 16.9 173 521-694 101-282 (342)
56 PF13639 zf-RING_2: Ring finge 98.1 1.6E-06 3.5E-11 65.3 1.8 40 266-306 2-44 (44)
57 KOG0168 Putative ubiquitin fus 98.1 6.2E-05 1.4E-09 86.9 14.9 203 464-674 170-388 (1051)
58 smart00184 RING Ring finger. E 98.1 3.8E-06 8.2E-11 60.5 3.4 39 267-305 1-39 (39)
59 COG5432 RAD18 RING-finger-cont 98.0 3.3E-06 7.1E-11 85.9 3.8 68 261-329 22-89 (391)
60 KOG2160 Armadillo/beta-catenin 98.0 0.00011 2.5E-09 78.4 15.4 141 554-695 93-240 (342)
61 KOG0320 Predicted E3 ubiquitin 98.0 3.8E-06 8.2E-11 80.3 2.3 51 265-316 132-184 (187)
62 KOG4646 Uncharacterized conser 97.9 5.2E-05 1.1E-09 69.9 9.0 143 504-647 14-164 (173)
63 KOG0317 Predicted E3 ubiquitin 97.9 8.3E-06 1.8E-10 83.8 3.9 57 257-314 232-288 (293)
64 KOG2759 Vacuolar H+-ATPase V1 97.9 0.0012 2.7E-08 71.6 20.3 268 421-693 116-436 (442)
65 TIGR00570 cdk7 CDK-activating 97.9 1.8E-05 3.9E-10 83.4 6.1 63 263-325 2-73 (309)
66 cd00256 VATPase_H VATPase_H, r 97.8 0.0017 3.7E-08 72.5 21.0 214 424-643 58-298 (429)
67 PHA02926 zinc finger-like prot 97.8 1.2E-05 2.6E-10 79.7 3.4 57 259-317 165-235 (242)
68 PF01602 Adaptin_N: Adaptin N 97.8 0.00064 1.4E-08 78.8 18.2 242 424-694 84-332 (526)
69 PF01602 Adaptin_N: Adaptin N 97.8 0.00043 9.3E-09 80.2 16.2 240 422-694 117-368 (526)
70 KOG0311 Predicted E3 ubiquitin 97.8 4.3E-06 9.4E-11 87.8 -0.6 68 260-327 39-108 (381)
71 KOG1293 Proteins containing ar 97.7 0.00088 1.9E-08 76.2 16.9 140 556-696 389-534 (678)
72 KOG1293 Proteins containing ar 97.7 0.0012 2.6E-08 75.1 17.8 268 423-694 13-489 (678)
73 PF00514 Arm: Armadillo/beta-c 97.6 4.9E-05 1.1E-09 56.2 3.3 40 534-573 2-41 (41)
74 PF14664 RICTOR_N: Rapamycin-i 97.6 0.0077 1.7E-07 66.7 22.0 265 423-693 29-362 (371)
75 KOG4646 Uncharacterized conser 97.6 0.00031 6.6E-09 64.9 9.1 145 546-691 18-166 (173)
76 PF14634 zf-RING_5: zinc-RING 97.6 5.4E-05 1.2E-09 57.0 3.2 41 266-307 1-44 (44)
77 PF05536 Neurochondrin: Neuroc 97.6 0.00061 1.3E-08 79.0 13.2 183 507-691 6-209 (543)
78 KOG0297 TNF receptor-associate 97.6 4.8E-05 1E-09 84.6 3.7 67 261-328 18-86 (391)
79 PF00514 Arm: Armadillo/beta-c 97.5 0.00022 4.8E-09 52.6 5.5 41 612-653 1-41 (41)
80 PTZ00429 beta-adaptin; Provisi 97.5 0.011 2.3E-07 70.9 22.0 235 424-680 145-419 (746)
81 KOG2164 Predicted E3 ubiquitin 97.5 7.3E-05 1.6E-09 82.6 3.4 71 262-332 184-262 (513)
82 KOG2973 Uncharacterized conser 97.4 0.011 2.4E-07 62.0 18.4 263 422-695 6-315 (353)
83 KOG2973 Uncharacterized conser 97.4 0.0027 5.8E-08 66.5 13.8 202 464-672 6-224 (353)
84 COG5222 Uncharacterized conser 97.4 0.00016 3.5E-09 74.0 4.6 67 265-331 275-343 (427)
85 KOG4159 Predicted E3 ubiquitin 97.4 0.00012 2.6E-09 80.5 3.6 73 257-330 77-154 (398)
86 PF05536 Neurochondrin: Neuroc 97.3 0.004 8.6E-08 72.4 15.4 230 462-696 6-262 (543)
87 KOG0289 mRNA splicing factor [ 97.3 0.00011 2.4E-09 79.2 2.3 52 265-317 1-53 (506)
88 KOG3678 SARM protein (with ste 97.3 0.0065 1.4E-07 66.5 15.3 255 421-695 182-452 (832)
89 KOG0946 ER-Golgi vesicle-tethe 97.2 0.0076 1.6E-07 69.9 15.9 186 506-694 22-240 (970)
90 PF12678 zf-rbx1: RING-H2 zinc 97.2 0.00035 7.6E-09 58.7 3.9 39 267-306 22-73 (73)
91 KOG2171 Karyopherin (importin) 97.2 0.021 4.5E-07 69.2 20.0 145 546-695 350-504 (1075)
92 KOG0978 E3 ubiquitin ligase in 97.2 0.00012 2.6E-09 84.7 1.4 54 263-316 642-695 (698)
93 COG5574 PEX10 RING-finger-cont 97.2 0.0002 4.4E-09 72.9 2.7 50 262-311 213-263 (271)
94 KOG2660 Locus-specific chromos 97.2 0.00017 3.6E-09 75.7 2.2 64 262-326 13-81 (331)
95 KOG1789 Endocytosis protein RM 97.2 0.02 4.4E-07 67.9 18.6 133 436-571 1742-1881(2235)
96 PF12348 CLASP_N: CLASP N term 97.1 0.005 1.1E-07 63.3 12.5 185 428-658 16-211 (228)
97 PF14664 RICTOR_N: Rapamycin-i 97.0 0.0082 1.8E-07 66.4 13.6 245 442-694 6-268 (371)
98 KOG2171 Karyopherin (importin) 97.0 0.043 9.4E-07 66.5 20.2 252 430-694 260-545 (1075)
99 TIGR02270 conserved hypothetic 97.0 0.042 9.1E-07 61.6 18.8 207 423-699 90-300 (410)
100 KOG2759 Vacuolar H+-ATPase V1 97.0 0.014 3E-07 63.7 13.9 218 431-652 169-437 (442)
101 KOG2734 Uncharacterized conser 96.9 0.096 2.1E-06 57.5 20.1 231 439-676 104-371 (536)
102 smart00185 ARM Armadillo/beta- 96.8 0.0017 3.6E-08 47.4 3.8 40 534-573 2-41 (41)
103 KOG2023 Nuclear transport rece 96.8 0.013 2.9E-07 66.8 12.3 261 419-697 174-507 (885)
104 PF10165 Ric8: Guanine nucleot 96.6 0.047 1E-06 62.2 15.9 235 430-666 43-348 (446)
105 KOG4413 26S proteasome regulat 96.4 0.11 2.4E-06 55.0 15.5 266 424-694 87-376 (524)
106 smart00185 ARM Armadillo/beta- 96.4 0.0071 1.5E-07 44.0 4.9 39 451-493 2-40 (41)
107 KOG3678 SARM protein (with ste 96.4 0.024 5.1E-07 62.2 10.8 157 537-696 173-337 (832)
108 COG1413 FOG: HEAT repeat [Ener 96.4 0.098 2.1E-06 57.0 16.0 210 422-691 46-269 (335)
109 PTZ00429 beta-adaptin; Provisi 96.4 0.27 5.9E-06 59.2 20.7 245 421-695 34-285 (746)
110 PF11841 DUF3361: Domain of un 96.3 0.029 6.4E-07 54.0 9.7 119 538-656 5-134 (160)
111 PF04641 Rtf2: Rtf2 RING-finge 96.2 0.0037 8E-08 65.9 3.7 53 262-316 111-167 (260)
112 KOG1789 Endocytosis protein RM 96.2 0.46 9.9E-06 57.1 20.3 133 560-695 1741-1883(2235)
113 KOG0824 Predicted E3 ubiquitin 96.1 0.0027 5.8E-08 65.9 1.9 47 266-312 9-55 (324)
114 PF12861 zf-Apc11: Anaphase-pr 96.1 0.0061 1.3E-07 52.1 3.8 50 261-310 29-82 (85)
115 KOG2734 Uncharacterized conser 96.1 0.29 6.3E-06 53.9 17.0 233 420-653 126-400 (536)
116 KOG1242 Protein containing ada 96.1 0.13 2.8E-06 58.9 15.0 257 423-696 138-446 (569)
117 PF12348 CLASP_N: CLASP N term 96.0 0.026 5.7E-07 57.9 8.9 148 544-696 53-207 (228)
118 KOG1813 Predicted E3 ubiquitin 96.0 0.003 6.5E-08 65.4 1.8 45 265-310 242-286 (313)
119 KOG3039 Uncharacterized conser 96.0 0.0042 9E-08 62.5 2.5 37 260-296 39-75 (303)
120 KOG2979 Protein involved in DN 95.9 0.0065 1.4E-07 62.0 3.5 64 263-326 175-244 (262)
121 COG5369 Uncharacterized conser 95.9 0.024 5.3E-07 63.3 8.0 153 523-675 451-617 (743)
122 PF11841 DUF3361: Domain of un 95.9 0.073 1.6E-06 51.4 10.3 118 579-697 5-134 (160)
123 KOG0802 E3 ubiquitin ligase [P 95.8 0.0037 8E-08 72.9 1.4 47 261-308 288-339 (543)
124 PF09759 Atx10homo_assoc: Spin 95.8 0.055 1.2E-06 48.4 8.5 66 599-665 2-71 (102)
125 COG5152 Uncharacterized conser 95.8 0.0055 1.2E-07 59.6 2.2 44 265-309 197-240 (259)
126 KOG2879 Predicted E3 ubiquitin 95.7 0.012 2.7E-07 60.4 4.4 49 262-310 237-287 (298)
127 KOG1061 Vesicle coat complex A 95.6 0.15 3.3E-06 59.6 13.6 257 423-699 125-420 (734)
128 KOG0826 Predicted E3 ubiquitin 95.5 0.0088 1.9E-07 62.8 3.0 54 256-310 292-346 (357)
129 KOG1002 Nucleotide excision re 95.5 0.0059 1.3E-07 67.4 1.6 49 263-311 535-587 (791)
130 KOG0212 Uncharacterized conser 95.5 0.22 4.8E-06 56.3 13.6 222 422-653 211-444 (675)
131 KOG1517 Guanine nucleotide bin 95.4 0.87 1.9E-05 55.1 18.8 226 462-694 473-731 (1387)
132 KOG3039 Uncharacterized conser 95.4 0.011 2.4E-07 59.5 3.0 53 263-316 220-276 (303)
133 KOG4151 Myosin assembly protei 95.4 0.38 8.3E-06 56.6 15.7 233 451-691 494-737 (748)
134 KOG2023 Nuclear transport rece 95.3 0.095 2.1E-06 60.1 10.1 258 420-695 129-463 (885)
135 KOG1517 Guanine nucleotide bin 95.2 0.22 4.8E-06 59.9 13.2 155 542-697 510-673 (1387)
136 KOG4628 Predicted E3 ubiquitin 95.0 0.016 3.5E-07 62.4 3.0 46 265-310 230-278 (348)
137 KOG1241 Karyopherin (importin) 94.8 1.3 2.8E-05 52.0 17.7 261 424-696 134-436 (859)
138 PF13646 HEAT_2: HEAT repeats; 94.8 0.09 1.9E-06 45.0 6.8 83 587-690 1-87 (88)
139 PF13646 HEAT_2: HEAT repeats; 94.8 0.071 1.5E-06 45.7 6.0 83 463-569 1-88 (88)
140 KOG1059 Vesicle coat complex A 94.7 1.8 3.8E-05 50.7 18.2 246 420-691 182-439 (877)
141 COG1413 FOG: HEAT repeat [Ener 94.7 1.5 3.2E-05 47.8 17.6 158 420-611 75-241 (335)
142 KOG3113 Uncharacterized conser 94.6 0.024 5.3E-07 57.4 2.9 50 263-315 110-163 (293)
143 PF04063 DUF383: Domain of unk 94.5 0.37 8.1E-06 48.3 11.1 123 554-676 5-157 (192)
144 COG5369 Uncharacterized conser 94.5 0.026 5.6E-07 63.1 3.1 258 424-694 436-740 (743)
145 PF13513 HEAT_EZ: HEAT-like re 94.4 0.069 1.5E-06 41.8 4.6 55 638-693 1-55 (55)
146 COG5243 HRD1 HRD ubiquitin lig 94.4 0.026 5.7E-07 60.1 2.8 48 262-310 285-345 (491)
147 KOG1824 TATA-binding protein-i 94.4 0.62 1.3E-05 55.7 14.0 258 423-696 9-287 (1233)
148 TIGR02270 conserved hypothetic 94.3 1.2 2.7E-05 50.0 15.7 174 422-653 120-296 (410)
149 PF13513 HEAT_EZ: HEAT-like re 94.2 0.092 2E-06 41.1 5.0 52 598-651 2-55 (55)
150 KOG1059 Vesicle coat complex A 94.2 1.5 3.2E-05 51.3 16.2 209 421-654 146-366 (877)
151 KOG0212 Uncharacterized conser 94.1 1.1 2.4E-05 50.9 14.7 271 420-696 125-407 (675)
152 KOG4367 Predicted Zn-finger pr 94.1 0.019 4E-07 62.1 1.0 33 263-295 3-35 (699)
153 KOG1241 Karyopherin (importin) 94.0 1.4 3.1E-05 51.7 15.5 215 430-652 228-476 (859)
154 PF06371 Drf_GBD: Diaphanous G 93.8 0.16 3.4E-06 50.5 7.0 75 578-652 100-186 (187)
155 KOG1242 Protein containing ada 93.8 0.4 8.7E-06 55.0 10.7 168 422-597 257-465 (569)
156 PF05659 RPW8: Arabidopsis bro 93.7 1.2 2.6E-05 42.8 12.4 89 14-103 26-115 (147)
157 COG5540 RING-finger-containing 93.6 0.056 1.2E-06 56.3 3.2 47 265-311 324-373 (374)
158 KOG2999 Regulator of Rac1, req 93.5 0.5 1.1E-05 53.4 10.5 151 548-699 87-247 (713)
159 PF12755 Vac14_Fab1_bd: Vacuol 93.4 0.51 1.1E-05 41.9 8.7 91 601-695 4-97 (97)
160 KOG3036 Protein involved in ce 93.3 1.8 3.9E-05 44.6 13.3 141 559-700 94-252 (293)
161 KOG4413 26S proteasome regulat 93.3 6.5 0.00014 42.1 17.7 254 434-690 186-479 (524)
162 KOG3036 Protein involved in ce 93.2 1.5 3.2E-05 45.2 12.4 227 422-653 29-291 (293)
163 KOG1645 RING-finger-containing 92.7 0.068 1.5E-06 57.8 2.4 66 265-330 5-79 (463)
164 KOG0213 Splicing factor 3b, su 92.5 0.28 6E-06 57.1 6.9 147 546-694 801-953 (1172)
165 COG5240 SEC21 Vesicle coat com 92.4 4.2 9.1E-05 46.5 15.7 254 426-696 271-556 (898)
166 PF04078 Rcd1: Cell differenti 92.3 2 4.3E-05 44.9 12.4 138 556-694 7-167 (262)
167 PF08045 CDC14: Cell division 92.3 1.6 3.4E-05 45.7 11.7 93 599-692 107-204 (257)
168 KOG2817 Predicted E3 ubiquitin 92.2 0.095 2.1E-06 56.9 2.8 43 264-306 334-381 (394)
169 KOG0883 Cyclophilin type, U bo 91.9 0.1 2.3E-06 56.0 2.6 53 264-317 40-92 (518)
170 KOG0804 Cytoplasmic Zn-finger 91.9 0.093 2E-06 57.6 2.2 42 265-309 176-221 (493)
171 PF04063 DUF383: Domain of unk 91.7 0.31 6.8E-06 48.9 5.6 91 504-594 50-156 (192)
172 PF10165 Ric8: Guanine nucleot 91.5 0.9 1.9E-05 51.8 9.7 111 564-675 1-131 (446)
173 KOG1062 Vesicle coat complex A 91.4 5.8 0.00013 47.1 16.0 142 548-695 354-544 (866)
174 PF02891 zf-MIZ: MIZ/SP-RING z 90.9 0.22 4.9E-06 38.5 2.9 45 264-308 2-50 (50)
175 PF13764 E3_UbLigase_R4: E3 ub 90.5 7.8 0.00017 47.1 16.7 235 457-694 113-405 (802)
176 PF09759 Atx10homo_assoc: Spin 90.2 0.79 1.7E-05 41.0 6.1 61 641-701 3-65 (102)
177 PF12031 DUF3518: Domain of un 90.2 0.49 1.1E-05 48.5 5.3 88 599-686 140-236 (257)
178 COG5231 VMA13 Vacuolar H+-ATPa 89.9 4.7 0.0001 43.1 12.3 227 422-652 151-427 (432)
179 KOG2259 Uncharacterized conser 89.8 1.1 2.4E-05 51.8 8.2 239 424-692 203-472 (823)
180 PF05004 IFRD: Interferon-rela 89.7 3.5 7.6E-05 44.7 11.9 146 545-695 87-257 (309)
181 smart00744 RINGv The RING-vari 89.7 0.38 8.2E-06 37.0 3.2 40 267-306 2-49 (49)
182 KOG0828 Predicted E3 ubiquitin 89.6 0.17 3.7E-06 56.0 1.7 35 277-311 601-635 (636)
183 KOG1248 Uncharacterized conser 89.5 7.6 0.00017 48.1 15.4 206 477-693 666-896 (1176)
184 PF07814 WAPL: Wings apart-lik 89.3 3.3 7.2E-05 45.8 11.6 238 422-665 24-311 (361)
185 KOG0213 Splicing factor 3b, su 89.0 2.7 5.8E-05 49.3 10.6 252 420-702 884-1149(1172)
186 COG5231 VMA13 Vacuolar H+-ATPa 88.9 5.1 0.00011 42.8 11.7 218 477-694 161-427 (432)
187 PF04078 Rcd1: Cell differenti 88.8 6 0.00013 41.4 12.2 139 560-699 66-222 (262)
188 COG5181 HSH155 U2 snRNP splice 88.3 13 0.00028 43.2 15.1 252 423-694 608-869 (975)
189 KOG3800 Predicted E3 ubiquitin 87.9 0.33 7.2E-06 50.6 2.3 30 281-310 22-51 (300)
190 KOG1077 Vesicle coat complex A 87.8 24 0.00051 41.7 17.0 71 625-698 330-401 (938)
191 PF11698 V-ATPase_H_C: V-ATPas 87.8 0.99 2.1E-05 41.5 5.1 70 624-693 43-113 (119)
192 COG5181 HSH155 U2 snRNP splice 87.6 0.49 1.1E-05 54.1 3.6 149 545-695 605-759 (975)
193 PF12755 Vac14_Fab1_bd: Vacuol 87.6 1.1 2.3E-05 39.9 5.1 66 543-610 26-94 (97)
194 PF11793 FANCL_C: FANCL C-term 87.4 0.17 3.6E-06 42.2 -0.1 47 264-310 2-66 (70)
195 COG5215 KAP95 Karyopherin (imp 87.1 32 0.0007 39.7 17.2 252 432-696 147-438 (858)
196 COG5627 MMS21 DNA repair prote 87.1 0.58 1.3E-05 47.2 3.5 57 264-320 189-249 (275)
197 KOG2259 Uncharacterized conser 87.0 2.9 6.2E-05 48.6 9.2 202 423-650 238-472 (823)
198 KOG1077 Vesicle coat complex A 86.9 33 0.00071 40.6 17.4 233 427-684 154-422 (938)
199 KOG1734 Predicted RING-contain 86.5 0.19 4.1E-06 51.6 -0.3 55 263-317 223-288 (328)
200 PF12717 Cnd1: non-SMC mitotic 86.5 2.7 5.8E-05 41.6 7.9 95 597-702 2-99 (178)
201 COG5109 Uncharacterized conser 86.1 0.45 9.7E-06 50.0 2.2 43 263-305 335-382 (396)
202 KOG1062 Vesicle coat complex A 85.4 28 0.0006 41.7 16.2 240 426-685 114-404 (866)
203 PF14570 zf-RING_4: RING/Ubox 85.0 0.74 1.6E-05 35.2 2.3 43 267-309 1-47 (48)
204 PF08569 Mo25: Mo25-like; Int 84.9 29 0.00064 38.0 15.6 195 456-654 71-284 (335)
205 KOG1001 Helicase-like transcri 84.4 0.25 5.3E-06 58.8 -0.8 46 265-311 455-501 (674)
206 KOG0396 Uncharacterized conser 84.2 0.5 1.1E-05 50.9 1.5 50 264-313 330-382 (389)
207 PF02985 HEAT: HEAT repeat; I 84.1 1.8 3.9E-05 29.6 3.8 28 626-653 2-29 (31)
208 PF12031 DUF3518: Domain of un 83.6 2.3 5E-05 43.8 5.9 80 558-637 138-229 (257)
209 KOG0827 Predicted E3 ubiquitin 83.5 0.73 1.6E-05 49.8 2.4 49 263-311 3-57 (465)
210 KOG1039 Predicted E3 ubiquitin 82.3 0.83 1.8E-05 49.7 2.3 49 262-310 159-221 (344)
211 PF11701 UNC45-central: Myosin 81.9 12 0.00026 36.2 10.1 140 546-690 5-154 (157)
212 KOG1240 Protein kinase contain 81.9 60 0.0013 40.8 17.5 251 432-696 436-726 (1431)
213 KOG0825 PHD Zn-finger protein 81.7 0.34 7.4E-06 56.4 -0.9 47 264-311 123-172 (1134)
214 KOG1785 Tyrosine kinase negati 81.4 0.72 1.6E-05 49.9 1.4 45 266-310 371-416 (563)
215 PF12717 Cnd1: non-SMC mitotic 81.1 49 0.0011 32.5 14.3 59 432-499 1-59 (178)
216 KOG2611 Neurochondrin/leucine- 80.6 21 0.00046 40.3 12.2 124 549-676 16-162 (698)
217 PF05004 IFRD: Interferon-rela 80.5 52 0.0011 35.7 15.4 53 598-652 201-256 (309)
218 KOG3161 Predicted E3 ubiquitin 80.3 0.87 1.9E-05 52.2 1.6 59 263-324 10-76 (861)
219 PF14668 RICTOR_V: Rapamycin-i 80.2 6.7 0.00014 32.9 6.5 61 561-621 4-68 (73)
220 COG5096 Vesicle coat complex, 80.2 19 0.0004 43.4 12.6 67 625-694 128-194 (757)
221 PF11698 V-ATPase_H_C: V-ATPas 79.5 4.5 9.8E-05 37.3 5.7 68 423-494 47-115 (119)
222 PF02985 HEAT: HEAT repeat; I 79.2 3.3 7.1E-05 28.3 3.7 29 667-695 1-29 (31)
223 KOG4172 Predicted E3 ubiquitin 79.1 0.54 1.2E-05 36.5 -0.3 44 266-309 9-53 (62)
224 PF14447 Prok-RING_4: Prokaryo 79.0 1.3 2.7E-05 34.8 1.7 44 266-312 9-52 (55)
225 KOG2999 Regulator of Rac1, req 78.9 25 0.00054 40.4 12.2 149 423-572 87-241 (713)
226 PF13764 E3_UbLigase_R4: E3 ub 78.2 16 0.00034 44.6 11.3 123 541-663 114-268 (802)
227 PF08569 Mo25: Mo25-like; Int 77.5 48 0.001 36.4 14.0 155 538-693 70-236 (335)
228 KOG1824 TATA-binding protein-i 77.3 70 0.0015 39.3 15.8 256 421-686 478-754 (1233)
229 PF14668 RICTOR_V: Rapamycin-i 77.1 12 0.00026 31.4 7.1 65 600-666 4-70 (73)
230 KOG2611 Neurochondrin/leucine- 77.0 23 0.00049 40.0 11.1 115 535-652 47-181 (698)
231 KOG1788 Uncharacterized conser 76.8 32 0.0007 42.3 12.8 243 441-693 664-980 (2799)
232 PF06371 Drf_GBD: Diaphanous G 76.7 22 0.00047 35.0 10.4 105 588-693 69-185 (187)
233 KOG4151 Myosin assembly protei 75.6 29 0.00064 41.4 12.2 192 493-688 491-692 (748)
234 COG5175 MOT2 Transcriptional r 75.5 1.8 3.8E-05 46.0 2.1 49 263-312 14-66 (480)
235 KOG1571 Predicted E3 ubiquitin 74.9 1.8 3.8E-05 46.8 2.0 47 259-309 300-346 (355)
236 KOG1788 Uncharacterized conser 74.6 48 0.001 40.9 13.4 205 436-653 749-982 (2799)
237 KOG1943 Beta-tubulin folding c 74.2 1.7E+02 0.0038 36.5 18.3 246 423-697 345-617 (1133)
238 KOG1078 Vesicle coat complex C 73.9 86 0.0019 37.7 15.2 250 423-695 248-532 (865)
239 COG5209 RCD1 Uncharacterized p 73.0 19 0.00041 36.8 8.5 136 521-656 118-271 (315)
240 PF08045 CDC14: Cell division 72.4 38 0.00082 35.6 11.0 94 560-654 107-208 (257)
241 KOG4692 Predicted E3 ubiquitin 72.0 2.3 5E-05 45.4 2.0 47 263-310 421-467 (489)
242 PF04641 Rtf2: Rtf2 RING-finge 72.0 4 8.7E-05 43.0 3.8 36 263-298 33-69 (260)
243 PF06025 DUF913: Domain of Unk 71.7 1.3E+02 0.0029 33.5 15.9 160 439-598 4-209 (379)
244 KOG1060 Vesicle coat complex A 71.5 1.2E+02 0.0026 36.6 15.6 206 422-653 38-246 (968)
245 PF12460 MMS19_C: RNAPII trans 71.2 70 0.0015 36.1 13.9 199 462-674 190-414 (415)
246 COG5096 Vesicle coat complex, 70.5 28 0.00061 42.0 10.7 137 421-574 57-196 (757)
247 PF06025 DUF913: Domain of Unk 69.9 32 0.00069 38.4 10.5 84 434-518 124-208 (379)
248 PF05605 zf-Di19: Drought indu 68.7 9.5 0.00021 29.8 4.4 33 263-307 1-39 (54)
249 COG5194 APC11 Component of SCF 67.3 4.3 9.3E-05 34.2 2.2 43 266-309 33-80 (88)
250 KOG1248 Uncharacterized conser 67.0 59 0.0013 40.7 12.5 213 431-654 666-899 (1176)
251 COG5209 RCD1 Uncharacterized p 66.4 34 0.00073 35.1 8.7 136 559-695 115-268 (315)
252 KOG0211 Protein phosphatase 2A 66.0 66 0.0014 39.1 12.7 256 422-694 358-624 (759)
253 KOG1493 Anaphase-promoting com 65.7 2.6 5.6E-05 35.2 0.6 49 261-309 28-80 (84)
254 COG5215 KAP95 Karyopherin (imp 65.6 1.7E+02 0.0038 34.1 14.9 215 430-654 232-480 (858)
255 PF05918 API5: Apoptosis inhib 64.5 37 0.00079 39.7 9.8 116 556-690 34-157 (556)
256 KOG0298 DEAD box-containing he 63.8 2 4.3E-05 53.4 -0.5 43 263-306 1152-1195(1394)
257 KOG0567 HEAT repeat-containing 63.8 2E+02 0.0044 30.4 15.2 62 623-695 217-280 (289)
258 PF12460 MMS19_C: RNAPII trans 63.4 31 0.00067 38.9 9.0 111 585-697 271-396 (415)
259 KOG1967 DNA repair/transcripti 62.8 21 0.00045 43.4 7.4 208 478-689 787-1018(1030)
260 PF08324 PUL: PUL domain; Int 62.0 46 0.00099 34.9 9.5 133 556-689 122-268 (268)
261 KOG0915 Uncharacterized conser 61.3 1.1E+02 0.0023 39.7 13.3 230 423-694 1043-1305(1702)
262 PLN02189 cellulose synthase 60.1 6.4 0.00014 48.6 2.8 46 265-310 35-87 (1040)
263 KOG2274 Predicted importin 9 [ 59.9 43 0.00093 40.7 9.3 150 543-694 529-688 (1005)
264 COG5219 Uncharacterized conser 59.7 5.8 0.00012 47.7 2.3 47 263-309 1468-1522(1525)
265 KOG1820 Microtubule-associated 59.7 55 0.0012 40.1 10.5 181 421-611 255-442 (815)
266 KOG1240 Protein kinase contain 59.4 40 0.00086 42.3 9.1 223 419-654 462-726 (1431)
267 cd03561 VHS VHS domain family; 59.3 45 0.00098 31.2 8.0 72 624-695 37-112 (133)
268 KOG4185 Predicted E3 ubiquitin 59.2 7.6 0.00016 41.6 3.0 51 277-327 22-77 (296)
269 KOG4362 Transcriptional regula 59.1 3.8 8.3E-05 48.2 0.7 64 263-326 20-85 (684)
270 KOG0301 Phospholipase A2-activ 58.6 70 0.0015 37.8 10.4 163 424-595 549-726 (745)
271 PF06416 DUF1076: Protein of u 58.1 12 0.00026 33.7 3.5 52 259-311 34-92 (113)
272 PF08324 PUL: PUL domain; Int 56.9 39 0.00085 35.4 8.0 180 426-644 70-265 (268)
273 PF14446 Prok-RING_1: Prokaryo 56.6 9.2 0.0002 30.0 2.2 28 265-292 6-37 (54)
274 PRK10869 recombination and rep 56.5 4E+02 0.0086 31.4 19.3 145 31-195 184-338 (553)
275 KOG1058 Vesicle coat complex C 56.5 4.4E+02 0.0096 32.0 16.7 88 559-657 374-467 (948)
276 PLN02195 cellulose synthase A 55.8 9.1 0.0002 47.0 3.1 46 266-311 8-60 (977)
277 KOG0414 Chromosome condensatio 55.8 53 0.0011 41.1 9.4 135 545-693 920-1062(1251)
278 KOG1943 Beta-tubulin folding c 54.7 45 0.00099 41.3 8.6 147 543-694 340-499 (1133)
279 KOG1058 Vesicle coat complex C 54.5 1.2E+02 0.0026 36.4 11.6 205 419-654 134-347 (948)
280 cd03569 VHS_Hrs_Vps27p VHS dom 54.5 57 0.0012 31.1 7.8 72 624-695 41-114 (142)
281 PF05290 Baculo_IE-1: Baculovi 54.3 13 0.00028 34.7 3.1 51 262-312 78-134 (140)
282 cd03569 VHS_Hrs_Vps27p VHS dom 54.1 45 0.00097 31.7 7.0 70 423-495 45-115 (142)
283 cd03568 VHS_STAM VHS domain fa 53.8 58 0.0013 31.1 7.7 73 624-696 37-111 (144)
284 KOG0414 Chromosome condensatio 52.0 67 0.0015 40.3 9.4 179 461-656 919-1105(1251)
285 KOG4464 Signaling protein RIC- 51.7 2.1E+02 0.0045 32.1 12.2 103 433-535 111-234 (532)
286 KOG1243 Protein kinase [Genera 51.2 74 0.0016 37.8 9.3 250 424-694 259-514 (690)
287 PF04499 SAPS: SIT4 phosphatas 51.0 75 0.0016 36.6 9.4 111 584-696 20-150 (475)
288 KOG1814 Predicted E3 ubiquitin 50.9 15 0.00032 40.6 3.4 58 263-324 183-250 (445)
289 PF10272 Tmpp129: Putative tra 50.3 11 0.00024 41.4 2.5 36 277-312 301-353 (358)
290 KOG2933 Uncharacterized conser 49.4 33 0.00072 36.8 5.6 135 422-571 91-232 (334)
291 KOG1061 Vesicle coat complex A 49.2 1.6E+02 0.0034 35.4 11.6 30 623-652 159-188 (734)
292 KOG2274 Predicted importin 9 [ 49.2 5.4E+02 0.012 31.9 15.9 148 459-611 528-688 (1005)
293 cd03567 VHS_GGA VHS domain fam 49.2 86 0.0019 29.8 8.0 72 624-695 38-116 (139)
294 cd03561 VHS VHS domain family; 48.5 82 0.0018 29.4 7.8 72 423-495 41-113 (133)
295 KOG4464 Signaling protein RIC- 48.4 2.7E+02 0.0058 31.3 12.3 185 503-694 10-227 (532)
296 PF14666 RICTOR_M: Rapamycin-i 47.8 3.4E+02 0.0073 28.1 13.1 125 558-693 78-223 (226)
297 KOG0211 Protein phosphatase 2A 47.0 1.7E+02 0.0037 35.7 11.8 262 423-698 240-511 (759)
298 PLN02436 cellulose synthase A 46.6 16 0.00035 45.3 3.3 46 265-310 37-89 (1094)
299 PF08389 Xpo1: Exportin 1-like 46.5 1.4E+02 0.0031 27.5 9.3 138 434-607 3-148 (148)
300 PF08167 RIX1: rRNA processing 46.3 1E+02 0.0023 29.9 8.4 103 423-530 29-141 (165)
301 smart00288 VHS Domain present 46.3 73 0.0016 29.8 7.1 71 423-495 41-112 (133)
302 KOG1820 Microtubule-associated 46.2 4.3E+02 0.0093 32.7 15.0 166 477-653 265-443 (815)
303 PF08216 CTNNBL: Catenin-beta- 46.1 15 0.00033 33.2 2.2 49 514-562 56-105 (108)
304 KOG4535 HEAT and armadillo rep 45.7 16 0.00034 41.3 2.7 149 459-611 431-602 (728)
305 KOG1060 Vesicle coat complex A 45.5 5.6E+02 0.012 31.3 15.1 195 465-693 39-244 (968)
306 PF10363 DUF2435: Protein of u 45.5 49 0.0011 29.0 5.3 70 421-496 5-74 (92)
307 PLN02638 cellulose synthase A 45.4 15 0.00032 45.7 2.8 45 266-310 19-70 (1079)
308 PRK11088 rrmA 23S rRNA methylt 45.2 11 0.00023 39.9 1.4 27 264-290 2-31 (272)
309 COG5098 Chromosome condensatio 44.4 57 0.0012 38.7 6.9 110 588-699 302-420 (1128)
310 smart00531 TFIIE Transcription 44.3 12 0.00027 35.7 1.5 38 262-311 97-135 (147)
311 KOG0301 Phospholipase A2-activ 43.8 6.1E+02 0.013 30.4 14.9 161 523-692 564-744 (745)
312 KOG2956 CLIP-associating prote 43.5 5.6E+02 0.012 29.4 16.1 73 423-499 290-364 (516)
313 KOG2933 Uncharacterized conser 43.1 1E+02 0.0023 33.1 8.1 130 549-691 93-230 (334)
314 TIGR00634 recN DNA repair prot 43.0 6.2E+02 0.014 29.8 18.9 144 31-194 188-342 (563)
315 PF11864 DUF3384: Domain of un 42.6 5.7E+02 0.012 29.3 15.5 253 433-702 4-293 (464)
316 PF14353 CpXC: CpXC protein 42.0 16 0.00034 34.0 1.8 46 264-309 1-48 (128)
317 PLN02915 cellulose synthase A 42.0 18 0.00039 44.8 2.7 46 265-310 16-68 (1044)
318 PF12719 Cnd3: Nuclear condens 41.6 2.2E+02 0.0048 30.4 10.8 152 519-679 43-210 (298)
319 KOG4653 Uncharacterized conser 41.1 2.9E+02 0.0063 33.9 12.1 68 422-494 730-797 (982)
320 KOG3665 ZYG-1-like serine/thre 40.5 2.3E+02 0.0049 34.5 11.6 187 442-650 494-694 (699)
321 KOG4718 Non-SMC (structural ma 40.4 18 0.00039 36.4 2.0 46 265-311 182-228 (235)
322 KOG2137 Protein kinase [Signal 40.1 2E+02 0.0043 34.5 10.6 137 543-685 388-527 (700)
323 cd03572 ENTH_epsin_related ENT 39.7 91 0.002 29.0 6.4 69 626-694 40-118 (122)
324 PF10367 Vps39_2: Vacuolar sor 39.6 12 0.00026 33.2 0.6 34 259-292 73-108 (109)
325 smart00288 VHS Domain present 39.6 1.1E+02 0.0023 28.8 7.0 71 625-695 38-111 (133)
326 COG3813 Uncharacterized protei 39.4 30 0.00064 28.7 2.7 42 276-320 21-62 (84)
327 KOG0567 HEAT repeat-containing 39.2 5E+02 0.011 27.6 13.5 87 545-651 188-278 (289)
328 KOG4653 Uncharacterized conser 38.8 1.1E+02 0.0024 37.3 8.2 164 522-695 746-918 (982)
329 KOG2930 SCF ubiquitin ligase, 38.5 21 0.00046 31.7 1.9 27 281-308 80-106 (114)
330 PF00790 VHS: VHS domain; Int 38.4 87 0.0019 29.5 6.3 71 625-695 43-118 (140)
331 KOG4739 Uncharacterized protei 36.6 17 0.00037 37.4 1.2 40 275-317 15-55 (233)
332 KOG4535 HEAT and armadillo rep 36.2 19 0.00041 40.7 1.5 170 522-693 410-601 (728)
333 cd03567 VHS_GGA VHS domain fam 35.9 1.4E+02 0.003 28.3 7.2 72 423-494 42-116 (139)
334 KOG0825 PHD Zn-finger protein 35.7 40 0.00087 40.2 4.0 48 258-305 90-149 (1134)
335 KOG4275 Predicted E3 ubiquitin 35.0 7.8 0.00017 40.7 -1.5 38 264-308 300-340 (350)
336 PHA02825 LAP/PHD finger-like p 34.9 40 0.00086 32.6 3.2 46 264-310 8-59 (162)
337 KOG1812 Predicted E3 ubiquitin 34.9 27 0.00059 39.0 2.6 41 264-304 146-195 (384)
338 cd00350 rubredoxin_like Rubred 34.5 21 0.00045 24.9 1.0 11 298-308 16-26 (33)
339 KOG1940 Zn-finger protein [Gen 34.5 32 0.00068 36.5 2.8 43 264-307 158-204 (276)
340 KOG2956 CLIP-associating prote 34.4 4.2E+02 0.0091 30.3 11.5 140 546-694 331-476 (516)
341 cd03568 VHS_STAM VHS domain fa 34.2 1.5E+02 0.0032 28.3 7.1 71 423-496 41-112 (144)
342 PF12830 Nipped-B_C: Sister ch 34.2 1E+02 0.0022 30.7 6.3 65 625-695 9-74 (187)
343 PF11701 UNC45-central: Myosin 34.1 56 0.0012 31.6 4.3 94 554-649 53-155 (157)
344 PRK14707 hypothetical protein; 34.0 9.6E+02 0.021 33.0 15.7 249 432-690 178-440 (2710)
345 KOG0314 Predicted E3 ubiquitin 34.0 19 0.00042 40.6 1.2 70 258-329 213-286 (448)
346 COG4530 Uncharacterized protei 33.9 28 0.00061 31.2 1.9 28 265-292 10-42 (129)
347 PHA02862 5L protein; Provision 33.9 29 0.00062 32.9 2.1 25 286-310 28-53 (156)
348 PF14225 MOR2-PAG1_C: Cell mor 33.8 5.9E+02 0.013 26.9 12.8 144 521-679 80-241 (262)
349 PF06676 DUF1178: Protein of u 33.5 20 0.00044 34.3 1.1 33 281-318 9-52 (148)
350 PF07191 zinc-ribbons_6: zinc- 33.2 6.6 0.00014 32.5 -1.9 41 264-310 1-41 (70)
351 KOG3002 Zn finger protein [Gen 33.1 42 0.00091 36.2 3.5 60 261-327 45-105 (299)
352 PF05918 API5: Apoptosis inhib 33.1 89 0.0019 36.6 6.4 61 625-690 60-120 (556)
353 PF07278 DUF1441: Protein of u 33.0 1.8E+02 0.0039 28.1 7.3 46 80-125 88-139 (152)
354 KOG4265 Predicted E3 ubiquitin 32.9 27 0.00059 38.0 2.0 45 265-310 291-336 (349)
355 PF13811 DUF4186: Domain of un 32.5 28 0.00061 31.4 1.7 21 276-296 64-86 (111)
356 KOG2114 Vacuolar assembly/sort 32.2 26 0.00055 42.2 1.8 40 264-307 840-880 (933)
357 PF08167 RIX1: rRNA processing 32.1 64 0.0014 31.4 4.4 67 545-611 68-142 (165)
358 KOG2032 Uncharacterized conser 31.6 8.6E+02 0.019 28.1 14.3 151 459-611 252-414 (533)
359 PF14569 zf-UDP: Zinc-binding 31.5 40 0.00088 28.5 2.4 46 266-311 11-63 (80)
360 KOG2025 Chromosome condensatio 31.3 5.4E+02 0.012 31.1 12.0 66 424-494 90-155 (892)
361 PF00790 VHS: VHS domain; Int 31.2 1.4E+02 0.003 28.2 6.4 68 424-494 47-118 (140)
362 COG0497 RecN ATPase involved i 31.0 9.4E+02 0.02 28.3 19.1 76 20-99 176-255 (557)
363 KOG4797 Transcriptional regula 30.3 1.3E+02 0.0028 27.1 5.4 33 93-125 45-77 (123)
364 PF12719 Cnd3: Nuclear condens 30.2 7E+02 0.015 26.6 16.4 162 423-596 30-208 (298)
365 PF11865 DUF3385: Domain of un 30.1 2.4E+02 0.0052 27.3 8.0 140 545-690 11-152 (160)
366 PLN02400 cellulose synthase 29.8 29 0.00064 43.2 1.9 46 265-310 37-89 (1085)
367 KOG2025 Chromosome condensatio 29.8 8E+02 0.017 29.7 13.0 112 461-583 85-200 (892)
368 PF11707 Npa1: Ribosome 60S bi 29.2 4.6E+02 0.01 28.5 11.0 191 424-614 61-303 (330)
369 COG1592 Rubrerythrin [Energy p 29.1 37 0.0008 33.2 2.1 25 264-308 134-158 (166)
370 COG2176 PolC DNA polymerase II 28.8 42 0.00091 42.1 2.9 39 260-310 910-950 (1444)
371 TIGR00373 conserved hypothetic 28.6 40 0.00086 32.7 2.2 34 262-311 107-140 (158)
372 COG5220 TFB3 Cdk activating ki 28.3 18 0.00039 36.9 -0.2 45 263-307 9-61 (314)
373 KOG1020 Sister chromatid cohes 28.1 3.9E+02 0.0085 34.9 10.9 126 522-657 796-925 (1692)
374 cd00729 rubredoxin_SM Rubredox 27.6 43 0.00094 23.6 1.7 10 299-308 18-27 (34)
375 cd00730 rubredoxin Rubredoxin; 27.5 28 0.0006 27.0 0.7 13 260-272 30-42 (50)
376 PF08746 zf-RING-like: RING-li 27.3 75 0.0016 23.7 3.0 38 268-305 2-43 (43)
377 PF08216 CTNNBL: Catenin-beta- 27.3 81 0.0017 28.6 3.7 37 561-597 63-99 (108)
378 cd00197 VHS_ENTH_ANTH VHS, ENT 26.8 3.7E+02 0.0081 24.0 8.3 70 625-694 38-114 (115)
379 KOG0915 Uncharacterized conser 26.2 3.7E+02 0.008 35.2 10.2 108 585-695 998-1110(1702)
380 KOG1992 Nuclear export recepto 25.1 5.8E+02 0.013 31.3 11.0 43 506-548 498-544 (960)
381 PF12530 DUF3730: Protein of u 25.0 7.6E+02 0.017 25.3 11.3 133 547-694 3-150 (234)
382 COG5218 YCG1 Chromosome conden 24.9 2.5E+02 0.0054 33.0 7.8 81 612-696 82-162 (885)
383 COG1885 Uncharacterized protei 24.9 24 0.00051 31.4 -0.1 23 298-320 48-70 (115)
384 PF00301 Rubredoxin: Rubredoxi 24.6 32 0.00068 26.3 0.6 13 260-272 30-42 (47)
385 PF12726 SEN1_N: SEN1 N termin 24.6 7.3E+02 0.016 30.3 12.6 106 548-654 445-554 (727)
386 KOG2062 26S proteasome regulat 24.4 2.1E+02 0.0046 34.4 7.3 94 543-651 553-651 (929)
387 KOG2062 26S proteasome regulat 24.1 1.2E+02 0.0027 36.3 5.4 127 421-572 520-652 (929)
388 PF14663 RasGEF_N_2: Rapamycin 23.6 1.9E+02 0.0042 26.3 5.7 31 625-655 9-39 (115)
389 PRK03922 hypothetical protein; 23.6 26 0.00057 31.5 -0.0 23 298-320 48-70 (113)
390 PF10521 DUF2454: Protein of u 23.2 3.1E+02 0.0067 29.2 8.0 68 544-611 119-202 (282)
391 PF11865 DUF3385: Domain of un 23.2 3.7E+02 0.008 26.0 7.9 70 580-651 81-155 (160)
392 PF06844 DUF1244: Protein of u 23.0 43 0.00092 27.4 1.0 13 285-297 11-23 (68)
393 KOG2032 Uncharacterized conser 22.9 2.7E+02 0.0058 32.0 7.5 145 543-693 253-414 (533)
394 KOG3899 Uncharacterized conser 22.6 44 0.00096 35.2 1.4 26 285-310 328-365 (381)
395 PRK06266 transcription initiat 22.4 69 0.0015 31.8 2.7 55 262-332 115-170 (178)
396 KOG1967 DNA repair/transcripti 22.4 1.7E+02 0.0038 35.9 6.3 141 421-567 869-1018(1030)
397 PF04475 DUF555: Protein of un 22.1 31 0.00066 30.5 0.1 22 298-319 46-67 (102)
398 KOG2041 WD40 repeat protein [G 22.0 3E+02 0.0064 33.0 7.8 51 256-308 1123-1183(1189)
399 PF12906 RINGv: RING-variant d 21.3 68 0.0015 24.3 1.9 29 277-305 13-47 (47)
400 PHA00733 hypothetical protein 21.2 1.9E+02 0.0042 27.0 5.2 52 264-334 73-126 (128)
401 COG1675 TFA1 Transcription ini 20.9 64 0.0014 31.9 2.0 52 262-329 111-163 (176)
402 TIGR03847 conserved hypothetic 20.8 92 0.002 30.6 3.0 22 295-316 152-174 (177)
403 COG3809 Uncharacterized protei 20.5 22 0.00047 30.0 -1.1 12 265-276 2-13 (88)
404 PF00096 zf-C2H2: Zinc finger, 20.1 35 0.00075 21.1 -0.0 13 265-277 1-13 (23)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.94 E-value=1.6e-25 Score=277.87 Aligned_cols=271 Identities=17% Similarity=0.173 Sum_probs=241.4
Q ss_pred cHHHHHhhcCC--CHHHHHHHHHHHHHHhhhcchhhHHHhh-CCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCC
Q 004582 421 DLTSLSKLASR--PWGSQCDAVENIKKLLKDNGQSRHLAFL-NSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSR 497 (744)
Q Consensus 421 ~~~ll~~L~s~--~~e~q~~Al~~Lr~Lak~~~~~r~~i~~-~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~ 497 (744)
+..++..|.++ +.+.|+.|+..|+.+++.++++|..+++ .|+||.|+.+|++ ++..+|++|+.+|.+++.++.
T Consensus 15 v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~s----g~~~vk~nAaaaL~nLS~~e~ 90 (2102)
T PLN03200 15 VAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRS----GTLGAKVNAAAVLGVLCKEED 90 (2102)
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCHH
Confidence 45788999977 7899999999999999999999999985 9999999999988 789999999999999999999
Q ss_pred CCcccccccchHHHHHhhcchh---HHHHHHHHHHhccC---hhhhHHHH-hcCCchhhhcccccCCH---HHHHHHHHH
Q 004582 498 DEMPLFHKDEICTFALFLDSEI---MEEALEIIEVLSHQ---QNYASELV-ASGIIPSIIKFLDTGTR---ESRELAIKI 567 (744)
Q Consensus 498 nk~~iv~~Gai~~Lv~lL~s~~---~e~A~~~L~~Ls~~---~~~k~~I~-~~G~Ip~Lv~lL~s~~~---~~k~~A~~a 567 (744)
++..++..|+|++|+.+|+++. .+.|+++|++|+.+ ++++..|+ ..|+||+|+.+|++++. .+++.|+.+
T Consensus 91 nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~A 170 (2102)
T PLN03200 91 LRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGA 170 (2102)
T ss_pred HHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHH
Confidence 9999999999999999998864 47899999999987 44565554 79999999999999853 356778899
Q ss_pred HHHhcCCcchHHH-HHhcCCcHhHHHHhcC--ccHHHHHHHHHHHhc--CHHHHHHHHhhCCcHHHHHHHHcCC-CHHHH
Q 004582 568 LCNLSSGDNIVYH-ILYLDCTSKLVRLLED--PILSSYCIKIIKALC--TSEARAAVAESNPCIDSIAKLLETG-TREEQ 641 (744)
Q Consensus 568 L~nLs~~~~n~~~-iv~aG~v~~Lv~lL~~--~~l~~~al~~L~nLa--~~e~~~~i~~~~g~V~~Lv~lL~~~-s~~~~ 641 (744)
|+||+.+++|+.. ++++|+||.|+.+|.+ +.++..|+++|.+++ +++++..+++ .|+||.|+++|+++ ++.+|
T Consensus 171 L~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIe-aGaVP~LV~LL~sg~~~~VR 249 (2102)
T PLN03200 171 LRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLD-AGAVKQLLKLLGQGNEVSVR 249 (2102)
T ss_pred HHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-CCCHHHHHHHHccCCChHHH
Confidence 9999999999865 5899999999999975 468899999999888 5889999999 69999999999865 56999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCH---------HHHHHHHHHHHHhhhc
Q 004582 642 EHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNS---------RGKETAKELIMLLDHC 696 (744)
Q Consensus 642 e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~---------~~r~~A~~lL~~L~~~ 696 (744)
++|+++|.+||+++.+++..+.+.|++|.|++++...+. ..++.|.++|.++.+.
T Consensus 250 E~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 250 AEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999986553 4589999999998754
No 2
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.4e-25 Score=229.63 Aligned_cols=265 Identities=18% Similarity=0.254 Sum_probs=243.2
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcccc
Q 004582 424 SLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPLF 503 (744)
Q Consensus 424 ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~iv 503 (744)
++.....+..++|+.|+..|++|+.. ++||..+...|++++|.++-++ .|..+|.+++.+|+|+....+||..++
T Consensus 131 Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLaks----kdirvqrnatgaLlnmThs~EnRr~LV 205 (550)
T KOG4224|consen 131 LILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKS----KDIRVQRNATGALLNMTHSRENRRVLV 205 (550)
T ss_pred HHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhccc----chhhHHHHHHHHHHHhhhhhhhhhhhh
Confidence 44555666789999999999999987 7899999999999999997666 789999999999999999999999999
Q ss_pred cccchHHHHHhhcchh---HHHHHHHHHHhccChhhhHHHHhcC--CchhhhcccccCCHHHHHHHHHHHHHhcCCcchH
Q 004582 504 HKDEICTFALFLDSEI---MEEALEIIEVLSHQQNYASELVASG--IIPSIIKFLDTGTRESRELAIKILCNLSSGDNIV 578 (744)
Q Consensus 504 ~~Gai~~Lv~lL~s~~---~e~A~~~L~~Ls~~~~~k~~I~~~G--~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~ 578 (744)
.+|++|.||+++.+++ ++.++.++.|++.+..+|+.+++.| .+|.||.+++++++.+|-.|..||.||+++.+..
T Consensus 206 ~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq 285 (550)
T KOG4224|consen 206 HAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQ 285 (550)
T ss_pred ccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhh
Confidence 9999999999998874 5789999999999999999999877 9999999999999999999999999999999999
Q ss_pred HHHHhcCCcHhHHHHhcCc--cHHHHHHHHHHHhc-CHHHHHHHHhhCCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcC
Q 004582 579 YHILYLDCTSKLVRLLEDP--ILSSYCIKIIKALC-TSEARAAVAESNPCIDSIAKLLETGT-REEQEHIVDVLLSLCHE 654 (744)
Q Consensus 579 ~~iv~aG~v~~Lv~lL~~~--~l~~~al~~L~nLa-~~e~~~~i~~~~g~V~~Lv~lL~~~s-~~~~e~A~~~L~~Lc~~ 654 (744)
..++++|.+|.++++|+++ .+.-..+.+++|++ ++-|-.-|++ +|++..||.+|+.++ .++|-+|+.+|++|+..
T Consensus 286 ~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~d-agfl~pLVrlL~~~dnEeiqchAvstLrnLAas 364 (550)
T KOG4224|consen 286 REIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIAD-AGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAAS 364 (550)
T ss_pred hHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceec-ccchhHHHHHHhcCCchhhhhhHHHHHHHHhhh
Confidence 9999999999999999875 45677888999999 9999999999 699999999999765 45999999999999998
Q ss_pred CHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 004582 655 HTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLD 694 (744)
Q Consensus 655 ~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~ 694 (744)
++.....+.+.|+||.|.+++.++.-.+|..-...+..|.
T Consensus 365 se~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~La 404 (550)
T KOG4224|consen 365 SEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLA 404 (550)
T ss_pred hhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 8899999999999999999999999999987777776665
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.92 E-value=4.6e-24 Score=264.98 Aligned_cols=276 Identities=20% Similarity=0.213 Sum_probs=239.3
Q ss_pred CCcHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCC
Q 004582 419 GTDLTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRD 498 (744)
Q Consensus 419 ~~~~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~n 498 (744)
+.++.++..|.+++...|..|++.|+++++.+++++..|++.|+||.|+++|++ ++..+|++|+++|.|++.+..+
T Consensus 446 ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s----~~~~iqeeAawAL~NLa~~~~q 521 (2102)
T PLN03200 446 EGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET----GSQKAKEDSATVLWNLCCHSED 521 (2102)
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhCCcHH
Confidence 467889999999999999999999999999999999999999999999999998 7899999999999999998766
Q ss_pred Ccccc-cccchHHHHHhhcchh---HHHHHHHHHHhccChhhh-------------------------------------
Q 004582 499 EMPLF-HKDEICTFALFLDSEI---MEEALEIIEVLSHQQNYA------------------------------------- 537 (744)
Q Consensus 499 k~~iv-~~Gai~~Lv~lL~s~~---~e~A~~~L~~Ls~~~~~k------------------------------------- 537 (744)
...++ ++|+|++|+++|+++. ++.|+.+|.+|+.+.++.
T Consensus 522 ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~ 601 (2102)
T PLN03200 522 IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLV 601 (2102)
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHH
Confidence 55555 7899999999998773 478999999996432211
Q ss_pred HHH-HhcCCchhhhcccccCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCCcHhHHHHhcCc--cHHHHHHHHHHHhc--
Q 004582 538 SEL-VASGIIPSIIKFLDTGTRESRELAIKILCNLSSG-DNIVYHILYLDCTSKLVRLLEDP--ILSSYCIKIIKALC-- 611 (744)
Q Consensus 538 ~~I-~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~-~~n~~~iv~aG~v~~Lv~lL~~~--~l~~~al~~L~nLa-- 611 (744)
... ...|++|.|+++|++++.+.++.|+++|.|++.+ ++++..++..|+||+|+.+|.++ +++.+|+++|.||+
T Consensus 602 ~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~ 681 (2102)
T PLN03200 602 REGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRS 681 (2102)
T ss_pred HHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhC
Confidence 111 1368999999999999999999999999999876 45678889999999999999764 67899999999999
Q ss_pred -CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHH
Q 004582 612 -TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELI 690 (744)
Q Consensus 612 -~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL 690 (744)
..+++..+++ .|+|+.|+++|.+.+..+++.|+.+|.+++.... ....+.+.|+++.|++++.+|++++|++|+++|
T Consensus 682 ~~~~q~~~~v~-~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e-~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL 759 (2102)
T PLN03200 682 IKENRKVSYAA-EDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE-VAAEALAEDIILPLTRVLREGTLEGKRNAARAL 759 (2102)
T ss_pred CCHHHHHHHHH-cCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch-HHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHH
Confidence 4566778888 7999999999999999999999999999998874 456677889999999999999999999999999
Q ss_pred HHhhhcCCCC
Q 004582 691 MLLDHCKEDN 700 (744)
Q Consensus 691 ~~L~~~~~~~ 700 (744)
..|..+...+
T Consensus 760 ~~L~~~~~~~ 769 (2102)
T PLN03200 760 AQLLKHFPVD 769 (2102)
T ss_pred HHHHhCCChh
Confidence 8777555433
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3.9e-23 Score=213.40 Aligned_cols=265 Identities=17% Similarity=0.189 Sum_probs=240.7
Q ss_pred HHHhh-cCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCccc
Q 004582 424 SLSKL-ASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPL 502 (744)
Q Consensus 424 ll~~L-~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~i 502 (744)
.+.+| .+.+..+|+.|..+|-+++. ..+||..++.+|++|.||.+|++ +|..+|..+++++.|+.-+.++|..+
T Consensus 171 pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s----~d~dvqyycttaisnIaVd~~~Rk~L 245 (550)
T KOG4224|consen 171 PLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKS----GDLDVQYYCTTAISNIAVDRRARKIL 245 (550)
T ss_pred hhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhcc----CChhHHHHHHHHhhhhhhhHHHHHHH
Confidence 33334 46688899999999999975 48999999999999999999998 89999999999999999999999999
Q ss_pred cccc--chHHHHHhhcchh---HHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCCcch
Q 004582 503 FHKD--EICTFALFLDSEI---MEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNI 577 (744)
Q Consensus 503 v~~G--ai~~Lv~lL~s~~---~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n 577 (744)
+++| .|+.||++++++. +-.|..+|.||+.+.++...|+++|++|.++++|+++.-........++.|++.++-|
T Consensus 246 aqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplN 325 (550)
T KOG4224|consen 246 AQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLN 325 (550)
T ss_pred HhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCc
Confidence 9988 9999999998774 4578889999999999999999999999999999988888888888999999999999
Q ss_pred HHHHHhcCCcHhHHHHhcC---ccHHHHHHHHHHHhc--CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Q 004582 578 VYHILYLDCTSKLVRLLED---PILSSYCIKIIKALC--TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLC 652 (744)
Q Consensus 578 ~~~iv~aG~v~~Lv~lL~~---~~l~~~al~~L~nLa--~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc 652 (744)
...|+++|.+.+||++|.- ++++-.|..+|+||| .+.++..|.+ .|+|+.|.+++..++-.+|+...+++..|+
T Consensus 326 e~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~e-sgAi~kl~eL~lD~pvsvqseisac~a~La 404 (550)
T KOG4224|consen 326 EVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRE-SGAIPKLIELLLDGPVSVQSEISACIAQLA 404 (550)
T ss_pred ccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhh-cCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 9999999999999999943 468999999999999 6789999999 699999999999999999999999999998
Q ss_pred cCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 004582 653 HEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLDH 695 (744)
Q Consensus 653 ~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~~ 695 (744)
.++ .....+.+.|.+|.|+.+..+.+.+++.+|+.+|-+|+.
T Consensus 405 l~d-~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 405 LND-NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSS 446 (550)
T ss_pred hcc-ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhh
Confidence 776 345778899999999999999999999999999998874
No 5
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=4.4e-22 Score=219.39 Aligned_cols=273 Identities=14% Similarity=0.156 Sum_probs=240.3
Q ss_pred CCcHHHHHhhcC-CCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCC
Q 004582 419 GTDLTSLSKLAS-RPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSR 497 (744)
Q Consensus 419 ~~~~~ll~~L~s-~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~ 497 (744)
+.++.++..|.. .++..|.+|+++|.++|..+.+.-..++++|++|.++.+|.+ .+..+++.|+|+|.|++.+..
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s----~~~~v~eQavWALgNIagds~ 184 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSS----PSADVREQAVWALGNIAGDSP 184 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcC----CcHHHHHHHHHHHhccccCCh
Confidence 457789988864 469999999999999999988888889999999999999998 799999999999999998765
Q ss_pred -CCcccccccchHHHHHhhcchh----HHHHHHHHHHhccChhhhHHHH-hcCCchhhhcccccCCHHHHHHHHHHHHHh
Q 004582 498 -DEMPLFHKDEICTFALFLDSEI----MEEALEIIEVLSHQQNYASELV-ASGIIPSIIKFLDTGTRESRELAIKILCNL 571 (744)
Q Consensus 498 -nk~~iv~~Gai~~Lv~lL~s~~----~e~A~~~L~~Ls~~~~~k~~I~-~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nL 571 (744)
-|..+++.|++.+|+.++.... ..+++++|.||+.+..--..+. -..++|.|..+|.+.+.++..+|++||.+|
T Consensus 185 ~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyL 264 (514)
T KOG0166|consen 185 DCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYL 264 (514)
T ss_pred HHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 5778889999999999996553 3679999999999875433333 267899999999999999999999999999
Q ss_pred cCCcchHHHH-HhcCCcHhHHHHhcC--ccHHHHHHHHHHHhc--CHHHHHHHHhhCCcHHHHHHHHc-CCCHHHHHHHH
Q 004582 572 SSGDNIVYHI-LYLDCTSKLVRLLED--PILSSYCIKIIKALC--TSEARAAVAESNPCIDSIAKLLE-TGTREEQEHIV 645 (744)
Q Consensus 572 s~~~~n~~~i-v~aG~v~~Lv~lL~~--~~l~~~al~~L~nLa--~~e~~~~i~~~~g~V~~Lv~lL~-~~s~~~~e~A~ 645 (744)
+.++..+..+ +++|++|.|+++|.. +.++..|+.++.|++ +++..+.+++ .|+++.|..++. +....+++.|+
T Consensus 265 sdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~-~~~L~~l~~ll~~s~~~~ikkEAc 343 (514)
T KOG0166|consen 265 TDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVIN-SGALPVLSNLLSSSPKESIKKEAC 343 (514)
T ss_pred hcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHh-cChHHHHHHHhccCcchhHHHHHH
Confidence 9776655555 789999999999965 467889999999999 6777777888 699999999998 55666999999
Q ss_pred HHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 004582 646 DVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLDHC 696 (744)
Q Consensus 646 ~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~~~ 696 (744)
+++.+++.+...+.+.+++.|++|.|+.++.++.-+.|+.|++++.++.-.
T Consensus 344 W~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 344 WTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred HHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999999988743
No 6
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.87 E-value=9.7e-23 Score=171.21 Aligned_cols=72 Identities=39% Similarity=0.747 Sum_probs=64.0
Q ss_pred CCCccccccccccCCCceecCCCccccHHHHHHHHccCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 004582 261 PPEEFKCSISLRLMYDPVVIASGKTFERVWIQKWFNAGHTTCPKTHMRLDNVSVTPNVAIKELISQWCLKHG 332 (744)
Q Consensus 261 ~p~~f~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~ 332 (744)
+|++|+||||+++|+|||++++||||||.+|++|+..++.+||.|++++...+|+||+.||+.|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 699999999999999999999999999999999999989999999999999999999999999999999985
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=5.1e-20 Score=203.18 Aligned_cols=275 Identities=15% Similarity=0.174 Sum_probs=238.5
Q ss_pred CCcHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCC
Q 004582 419 GTDLTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRD 498 (744)
Q Consensus 419 ~~~~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~n 498 (744)
+.+|-|+..|.+.+.+++++|+++|.+++.+++..|..+...|++++|+.++... ......++++|+|.|||.+..-
T Consensus 152 gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~---~~~~~lRn~tW~LsNlcrgk~P 228 (514)
T KOG0166|consen 152 GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKS---DKLSMLRNATWTLSNLCRGKNP 228 (514)
T ss_pred CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccc---cchHHHHHHHHHHHHHHcCCCC
Confidence 4677899999999999999999999999999999999999999999999999872 1237889999999999997753
Q ss_pred Ccccc-cccchHHHHHhhcch---hHHHHHHHHHHhccChhhhHHHH-hcCCchhhhcccccCCHHHHHHHHHHHHHhcC
Q 004582 499 EMPLF-HKDEICTFALFLDSE---IMEEALEIIEVLSHQQNYASELV-ASGIIPSIIKFLDTGTRESRELAIKILCNLSS 573 (744)
Q Consensus 499 k~~iv-~~Gai~~Lv~lL~s~---~~e~A~~~L~~Ls~~~~~k~~I~-~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~ 573 (744)
-..+. -..+++.|..++.+. +...|++++.+|+.+...+..++ +.|.+|.|+++|.+.+..++..|+.++.|+..
T Consensus 229 ~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt 308 (514)
T KOG0166|consen 229 SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT 308 (514)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceee
Confidence 33333 347888888888654 45789999999998877766655 89999999999999999999999999999999
Q ss_pred CcchHHHH-HhcCCcHhHHHHhcC---ccHHHHHHHHHHHhc--CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHH
Q 004582 574 GDNIVYHI-LYLDCTSKLVRLLED---PILSSYCIKIIKALC--TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDV 647 (744)
Q Consensus 574 ~~~n~~~i-v~aG~v~~Lv~lL~~---~~l~~~al~~L~nLa--~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~ 647 (744)
+.+..... +..|++|.|..+|.. ..++.+|+|++.|++ +.+..+++++ +|.+|.|+.+|.+++-+.|..|+++
T Consensus 309 G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVid-a~l~p~Li~~l~~~ef~~rKEAawa 387 (514)
T KOG0166|consen 309 GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVID-ANLIPVLINLLQTAEFDIRKEAAWA 387 (514)
T ss_pred ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHH-cccHHHHHHHHhccchHHHHHHHHH
Confidence 98876665 689999999999973 358899999999999 8899999999 6999999999999999999999999
Q ss_pred HHHHhcC-CHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcC
Q 004582 648 LLSLCHE-HTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLDHCK 697 (744)
Q Consensus 648 L~~Lc~~-~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~~~~ 697 (744)
+.++|++ +.+....+.+.|+|++|..++.-.+.+.-..+...|.++-...
T Consensus 388 IsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 388 ISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVG 438 (514)
T ss_pred HHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence 9999865 5567788999999999999998778888888888888776443
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.83 E-value=1.5e-19 Score=185.73 Aligned_cols=272 Identities=15% Similarity=0.159 Sum_probs=221.4
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHHh-hhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCC
Q 004582 420 TDLTSLSKLASRPWGSQCDAVENIKKLL-KDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRD 498 (744)
Q Consensus 420 ~~~~ll~~L~s~~~e~q~~Al~~Lr~La-k~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~n 498 (744)
.+|.+.+.|.+.+.+.|..|+...|.+. ++...--..+..+|++|.+|.++... ...-.|-.|+|+|.|+++...+
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~---q~~mlqfEAaWalTNiaSGtt~ 148 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEI---QRDMLQFEAAWALTNIASGTTQ 148 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhc---chhHHHHHHHHHHhhhccCccc
Confidence 4688999999999999999999999876 44444455678899999999999652 5667888999999999997766
Q ss_pred Cc-ccccccchHHHHHhhcch---hHHHHHHHHHHhccChhh-hHHHHhcCCchhhhcccccC-----------------
Q 004582 499 EM-PLFHKDEICTFALFLDSE---IMEEALEIIEVLSHQQNY-ASELVASGIIPSIIKFLDTG----------------- 556 (744)
Q Consensus 499 k~-~iv~~Gai~~Lv~lL~s~---~~e~A~~~L~~Ls~~~~~-k~~I~~~G~Ip~Lv~lL~s~----------------- 556 (744)
.- .++++|+||.++++|.++ +.+.++++|.|++.+.+. |..+...|++.+|+.+|.+.
T Consensus 149 QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNl 228 (526)
T COG5064 149 QTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNL 228 (526)
T ss_pred ceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHh
Confidence 54 456999999999999765 458999999999998766 66666899999999988764
Q ss_pred ---------------------------CHHHHHHHHHHHHHhcCCcchHHHH-HhcCCcHhHHHHhcCc--cHHHHHHHH
Q 004582 557 ---------------------------TRESRELAIKILCNLSSGDNIVYHI-LYLDCTSKLVRLLEDP--ILSSYCIKI 606 (744)
Q Consensus 557 ---------------------------~~~~k~~A~~aL~nLs~~~~n~~~i-v~aG~v~~Lv~lL~~~--~l~~~al~~ 606 (744)
++++...|++||..|+-.+..+..+ +..|+.+.|+++|..+ .+..-|+..
T Consensus 229 cRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~ 308 (526)
T COG5064 229 CRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRS 308 (526)
T ss_pred hCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHh
Confidence 3455566666666666665544443 5678888888888654 456777888
Q ss_pred HHHhc--CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHH
Q 004582 607 IKALC--TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKE 684 (744)
Q Consensus 607 L~nLa--~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~ 684 (744)
..|+. ++...+.+++ .|+++.+-.+|++....++..|+|++.++..++.+..+.+++...+|+|+.++....-..++
T Consensus 309 vGNIVTG~D~QTqviI~-~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kK 387 (526)
T COG5064 309 VGNIVTGSDDQTQVIIN-CGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKK 387 (526)
T ss_pred hcCeeecCccceehhee-cccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 88888 4455555666 68888888888887778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 004582 685 TAKELIMLLDH 695 (744)
Q Consensus 685 ~A~~lL~~L~~ 695 (744)
.|+|++.+...
T Consensus 388 EACWAisNats 398 (526)
T COG5064 388 EACWAISNATS 398 (526)
T ss_pred HHHHHHHhhhc
Confidence 99999988874
No 9
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.81 E-value=4.2e-19 Score=182.35 Aligned_cols=271 Identities=16% Similarity=0.159 Sum_probs=233.0
Q ss_pred CCcHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCC-
Q 004582 419 GTDLTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSR- 497 (744)
Q Consensus 419 ~~~~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~- 497 (744)
+.+|.|++.|.+.+.+++.+|+++|.++|.+++..|..+.+.|++++++.+|.+. ..+....+++.|.|.|||....
T Consensus 157 ~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss--~~~ismlRn~TWtLSNlcRGknP 234 (526)
T COG5064 157 GAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSS--AIHISMLRNATWTLSNLCRGKNP 234 (526)
T ss_pred CchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhc--cchHHHHHHhHHHHHHhhCCCCC
Confidence 4678999999999999999999999999999999999999999999999998763 2567889999999999997432
Q ss_pred --CCcccccccchHHHHHhhcc---hhHHHHHHHHHHhccChhhhHHHH-hcCCchhhhcccccCCHHHHHHHHHHHHHh
Q 004582 498 --DEMPLFHKDEICTFALFLDS---EIMEEALEIIEVLSHQQNYASELV-ASGIIPSIIKFLDTGTRESRELAIKILCNL 571 (744)
Q Consensus 498 --nk~~iv~~Gai~~Lv~lL~s---~~~e~A~~~L~~Ls~~~~~k~~I~-~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nL 571 (744)
+...+ .-++|.|..++.+ ++...|++++..|+..+..+..++ +.|..+.|+++|.+.+..++..|+..+.|+
T Consensus 235 ~P~w~~i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNI 312 (526)
T COG5064 235 PPDWSNI--SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNI 312 (526)
T ss_pred CCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCe
Confidence 22111 2467777777654 455789999999999877665554 899999999999999999999999999999
Q ss_pred cCCcchHHH-HHhcCCcHhHHHHhcCc--cHHHHHHHHHHHhc--CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHH
Q 004582 572 SSGDNIVYH-ILYLDCTSKLVRLLEDP--ILSSYCIKIIKALC--TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVD 646 (744)
Q Consensus 572 s~~~~n~~~-iv~aG~v~~Lv~lL~~~--~l~~~al~~L~nLa--~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~ 646 (744)
....+.... ++..|+++.+..+|.++ .++.+|||++.|+. +.+..+++++ ...+|.|+++|...+-..+..|+|
T Consensus 313 VTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid-~nliPpLi~lls~ae~k~kKEACW 391 (526)
T COG5064 313 VTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVID-ANLIPPLIHLLSSAEYKIKKEACW 391 (526)
T ss_pred eecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHH
Confidence 988776554 47899999999999774 79999999999999 8899999999 699999999999999999999999
Q ss_pred HHHHHhcC---CHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 004582 647 VLLSLCHE---HTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLD 694 (744)
Q Consensus 647 ~L~~Lc~~---~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~ 694 (744)
++.+..++ -++..+.+...|+|.+|..++.-.+.++-+.|...++.+-
T Consensus 392 AisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniL 442 (526)
T COG5064 392 AISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENIL 442 (526)
T ss_pred HHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHH
Confidence 99999765 3467788899999999999999988888888888887654
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.74 E-value=8.8e-17 Score=186.61 Aligned_cols=224 Identities=23% Similarity=0.340 Sum_probs=193.7
Q ss_pred HHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcccccccchHHHHHhhcchhH---HHHHHHHHHhccChhhhHHH
Q 004582 464 KPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPLFHKDEICTFALFLDSEIM---EEALEIIEVLSHQQNYASEL 540 (744)
Q Consensus 464 ~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~iv~~Gai~~Lv~lL~s~~~---e~A~~~L~~Ls~~~~~k~~I 540 (744)
+.+-.+++. .....+.+..+|+|++.+.+++..|++.|+|+.|+.+|++++. ..+++.|..||...+||..+
T Consensus 253 kk~~~l~~k-----QeqLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m 327 (708)
T PF05804_consen 253 KKLQTLIRK-----QEQLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEM 327 (708)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444455554 3456678999999999999999999999999999999998765 45889999999999999999
Q ss_pred HhcCCchhhhcccccCCHHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcCccHHHHHHHHHHHhc-CHHHHHHH
Q 004582 541 VASGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLEDPILSSYCIKIIKALC-TSEARAAV 619 (744)
Q Consensus 541 ~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~~l~~~al~~L~nLa-~~e~~~~i 619 (744)
++.|+||+|++++.+++.+....|+++|+|||.+++++..|++.|+||.|+.+|.+++....|+.+|++|| .+++|..+
T Consensus 328 ~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f 407 (708)
T PF05804_consen 328 AESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMF 407 (708)
T ss_pred HHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HhhCCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcC
Q 004582 620 AESNPCIDSIAKLLET-GTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLDHCK 697 (744)
Q Consensus 620 ~~~~g~V~~Lv~lL~~-~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~~~~ 697 (744)
..+ ++|+.|+++|-+ +++.+...+++++.+|+.+. .+++.+.+.|+++.|++......+. ...+++++++.++
T Consensus 408 ~~T-dcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~ 481 (708)
T PF05804_consen 408 AYT-DCIPQLMQMLLENSEEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHD 481 (708)
T ss_pred hhc-chHHHHHHHHHhCCCccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcC
Confidence 885 899999998755 45666667788888887654 7778888888999999988765542 2446777777665
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.73 E-value=3.4e-16 Score=181.73 Aligned_cols=272 Identities=17% Similarity=0.136 Sum_probs=226.7
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCC
Q 004582 420 TDLTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDE 499 (744)
Q Consensus 420 ~~~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk 499 (744)
-++-++..|.+.+.+....++..|++|+-. .+|+..|.+.|+|+.|++++.+ .+...+..++.+|+||+.+..+|
T Consensus 291 iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s----~~~~l~~~aLrlL~NLSfd~~~R 365 (708)
T PF05804_consen 291 IVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPS----ENEDLVNVALRLLFNLSFDPELR 365 (708)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcC----CCHHHHHHHHHHHHHhCcCHHHH
Confidence 344577888889999999999999999976 6799999999999999999988 78899999999999999999999
Q ss_pred cccccccchHHHHHhhcchh-HHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccC-CHHHHHHHHHHHHHhcCCcch
Q 004582 500 MPLFHKDEICTFALFLDSEI-MEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTG-TRESRELAIKILCNLSSGDNI 577 (744)
Q Consensus 500 ~~iv~~Gai~~Lv~lL~s~~-~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~-~~~~k~~A~~aL~nLs~~~~n 577 (744)
..|+..|+||.|+.+|..+. ...++.+|++||.++++|..+...+++|.|+++|-++ +.++...++.++.|||.++.|
T Consensus 366 ~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn 445 (708)
T PF05804_consen 366 SQMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRN 445 (708)
T ss_pred HHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHH
Confidence 99999999999999998764 4679999999999999999999899999999987654 455677788889999999999
Q ss_pred HHHHHhcCCcHhHHHHhcC----------------------------------------ccHHHHHHHHHHHhc-C----
Q 004582 578 VYHILYLDCTSKLVRLLED----------------------------------------PILSSYCIKIIKALC-T---- 612 (744)
Q Consensus 578 ~~~iv~aG~v~~Lv~lL~~----------------------------------------~~l~~~al~~L~nLa-~---- 612 (744)
...|.+.|+++.|++.... +++.-+|+++|+||+ .
T Consensus 446 aqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~ 525 (708)
T PF05804_consen 446 AQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDW 525 (708)
T ss_pred HHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCH
Confidence 9888888888887764310 113445666666665 2
Q ss_pred ----------------------------------------HHHHHHHHhhCCcHHHHHHHHcC--CCHHHHHHHHHHHHH
Q 004582 613 ----------------------------------------SEARAAVAESNPCIDSIAKLLET--GTREEQEHIVDVLLS 650 (744)
Q Consensus 613 ----------------------------------------~e~~~~i~~~~g~V~~Lv~lL~~--~s~~~~e~A~~~L~~ 650 (744)
++....+.+ .|+++.|+++|.. .+.+..-..+.+++.
T Consensus 526 ~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~-sgli~~Li~LL~~kqeDdE~VlQil~~f~~ 604 (708)
T PF05804_consen 526 AQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAK-SGLIPTLIELLNAKQEDDEIVLQILYVFYQ 604 (708)
T ss_pred HHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHh-CChHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence 223344455 6899999999964 467778888999999
Q ss_pred HhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcC
Q 004582 651 LCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLDHCK 697 (744)
Q Consensus 651 Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~~~~ 697 (744)
+-.+.......+.+.+++..|++++.+.++.+|+.|-.+|-.+.+.+
T Consensus 605 ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 605 LLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred HHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 98888777677777889999999999999999999999998876543
No 12
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.69 E-value=2.5e-17 Score=134.52 Aligned_cols=63 Identities=46% Similarity=0.824 Sum_probs=60.5
Q ss_pred ccccccccccCCCceecCCCccccHHHHHHHHccCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 004582 264 EFKCSISLRLMYDPVVIASGKTFERVWIQKWFNAGHTTCPKTHMRLDNVSVTPNVAIKELISQW 327 (744)
Q Consensus 264 ~f~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~ 327 (744)
+|.||||+++|+|||+++|||+|||.||.+|+.. +.+||.|++++...+++||..||+.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5899999999999999999999999999999987 67999999999999999999999999998
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.60 E-value=8.2e-14 Score=158.66 Aligned_cols=269 Identities=15% Similarity=0.148 Sum_probs=221.4
Q ss_pred CCcHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhc---C
Q 004582 419 GTDLTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILS---Q 495 (744)
Q Consensus 419 ~~~~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~---~ 495 (744)
...++.+.+|.+.++.+|-.|+..|..++..+.+.|..+.+.|+|+.||.+|.+ .+.++|++|+.+|.||+- .
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~----~~~evq~~acgaLRNLvf~~~~ 308 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDH----RNDEVQRQACGALRNLVFGKST 308 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcC----CcHHHHHHHHHHHHhhhcccCC
Confidence 467899999999999999999999999999999999999999999999999998 789999999999999975 3
Q ss_pred CCCCcccccccchHHHHHhhcc----hhHHHHHHHHHHhccChh------------------------------------
Q 004582 496 SRDEMPLFHKDEICTFALFLDS----EIMEEALEIIEVLSHQQN------------------------------------ 535 (744)
Q Consensus 496 ~~nk~~iv~~Gai~~Lv~lL~s----~~~e~A~~~L~~Ls~~~~------------------------------------ 535 (744)
+.||..|.+.|+|+.++++|.. ++.+...++|+||++++.
T Consensus 309 ~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~ 388 (717)
T KOG1048|consen 309 DSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDS 388 (717)
T ss_pred cccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccc
Confidence 4689999999999999999963 355777788888877633
Q ss_pred -------------------hhHHHHh-cCCchhhhcccccC---------------------------------------
Q 004582 536 -------------------YASELVA-SGIIPSIIKFLDTG--------------------------------------- 556 (744)
Q Consensus 536 -------------------~k~~I~~-~G~Ip~Lv~lL~s~--------------------------------------- 556 (744)
.|..+.+ .|.|..|+..+++.
T Consensus 389 ~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~ 468 (717)
T KOG1048|consen 389 TVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLAN 468 (717)
T ss_pred eeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhc
Confidence 3334443 45566655555421
Q ss_pred ---------------------------------------------------------------CHHHHHHHHHHHHHhcC
Q 004582 557 ---------------------------------------------------------------TRESRELAIKILCNLSS 573 (744)
Q Consensus 557 ---------------------------------------------------------------~~~~k~~A~~aL~nLs~ 573 (744)
+....+++++||-||+.
T Consensus 469 ~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA 548 (717)
T KOG1048|consen 469 IARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTA 548 (717)
T ss_pred ccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhc
Confidence 33455778889999886
Q ss_pred Ccc-----hHHHH-HhcCCcHhHHHHhc--CccHHHHHHHHHHHhc-CHHHHHHHHhhCCcHHHHHHHHcCC------CH
Q 004582 574 GDN-----IVYHI-LYLDCTSKLVRLLE--DPILSSYCIKIIKALC-TSEARAAVAESNPCIDSIAKLLETG------TR 638 (744)
Q Consensus 574 ~~~-----n~~~i-v~aG~v~~Lv~lL~--~~~l~~~al~~L~nLa-~~e~~~~i~~~~g~V~~Lv~lL~~~------s~ 638 (744)
... .+..+ .+..++|+|+++|. +..++..++.+|+||+ +..++..|.. ++++.||+.|..+ +.
T Consensus 549 ~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk--~a~~~lv~~Lp~~~~~~~~se 626 (717)
T KOG1048|consen 549 GLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGK--YAIPDLVRCLPGSGPSTSLSE 626 (717)
T ss_pred cCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhc--chHHHHHHhCcCCCCCcCchH
Confidence 543 33344 56789999999995 4579999999999999 9999999986 8899999999753 35
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcC-CHHHHHHHHHHHHHh
Q 004582 639 EEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNG-NSRGKETAKELIMLL 693 (744)
Q Consensus 639 ~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~-s~~~r~~A~~lL~~L 693 (744)
+....++.+|+++...+..+...+.+.++++.|+.|..+. ++++-+.|..+|..|
T Consensus 627 dtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~l 682 (717)
T KOG1048|consen 627 DTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVL 682 (717)
T ss_pred HHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 7778999999999999999999999999999999998764 568888888888665
No 14
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=7e-13 Score=137.00 Aligned_cols=261 Identities=12% Similarity=0.201 Sum_probs=219.0
Q ss_pred cCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCc--------
Q 004582 429 ASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEM-------- 500 (744)
Q Consensus 429 ~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~-------- 500 (744)
...+.++-...+..++.-+-.++.||..+.+.+++|.+...|... +...+.+.+.+++..+..+++-|.
T Consensus 157 ~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~---gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~h 233 (461)
T KOG4199|consen 157 KVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNRE---GKTRTVRELYDAIRALLTDDDIRVVFGQAHGH 233 (461)
T ss_pred ccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHccc---CccHHHHHHHHHHHHhcCCCceeeecchhhHH
Confidence 344677778888888888888899999999999999999888762 445788999999999988766554
Q ss_pred --ccccccchHHHHHhhc----chhHHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCH----HHHHHHHHHHHH
Q 004582 501 --PLFHKDEICTFALFLD----SEIMEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTR----ESRELAIKILCN 570 (744)
Q Consensus 501 --~iv~~Gai~~Lv~lL~----s~~~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~----~~k~~A~~aL~n 570 (744)
.+++.|++..|++.|. ++....++.+|..|+..++.+..|.+.|++..|+.++.+.+. +.-+.++..|..
T Consensus 234 Ar~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLra 313 (461)
T KOG4199|consen 234 ARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRA 313 (461)
T ss_pred HHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHH
Confidence 3456778888888874 445678899999999999999999999999999999987443 355778999999
Q ss_pred hcCCcchHHHHHhcCCcHhHHHHh----cCccHHHHHHHHHHHhc--CHHHHHHHHhhCCcHHHHHHHHcCC--CHHHHH
Q 004582 571 LSSGDNIVYHILYLDCTSKLVRLL----EDPILSSYCIKIIKALC--TSEARAAVAESNPCIDSIAKLLETG--TREEQE 642 (744)
Q Consensus 571 Ls~~~~n~~~iv~aG~v~~Lv~lL----~~~~l~~~al~~L~nLa--~~e~~~~i~~~~g~V~~Lv~lL~~~--s~~~~e 642 (744)
|+..++++..||+.|+.+.++.++ .+|.+...++.++.-|+ .|++-..+++ .|+-...|+.|+.- ...+|.
T Consensus 314 lAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie-~G~a~~avqAmkahP~~a~vQr 392 (461)
T KOG4199|consen 314 LAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIE-AGAADLAVQAMKAHPVAAQVQR 392 (461)
T ss_pred HhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHh-cchHHHHHHHHHhCcHHHHHHH
Confidence 999999999999999999999987 46789999999999999 8999999999 58888899999743 456899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 004582 643 HIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLD 694 (744)
Q Consensus 643 ~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~ 694 (744)
+|++.+.+|...+.+++..+...| +..|+.......+..+..|..+|+-|.
T Consensus 393 nac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 393 NACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred HHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 999999999999988888888777 467777777777777777877887653
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=1.8e-11 Score=126.66 Aligned_cols=260 Identities=16% Similarity=0.170 Sum_probs=215.9
Q ss_pred cCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhc-CCCCCcccccccc
Q 004582 429 ASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILS-QSRDEMPLFHKDE 507 (744)
Q Consensus 429 ~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~-~~~nk~~iv~~Ga 507 (744)
.+++...-.+++.+|-.+....+ .+..+.+...++++|.... .+.++...++..+..-|. ++.||..+++.++
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~qp----dl~da~g~~vvv~lL~~~~--~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~i 190 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHKQP----DLFDAEAMAVVLKLLALKV--ESEEVTLLTLQWLQKACIMHEVNRQLFMELKI 190 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcCCc----chhccccHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHhHHHHHHHHHhhH
Confidence 34566667788888888876544 3566778889999997643 567777788888887776 6679999999999
Q ss_pred hHHHHHhhcch----hHHHHHHHHHHhccChh----------hhHHHHhcCCchhhhcccccC-CHHHHHHHHHHHHHhc
Q 004582 508 ICTFALFLDSE----IMEEALEIIEVLSHQQN----------YASELVASGIIPSIIKFLDTG-TRESRELAIKILCNLS 572 (744)
Q Consensus 508 i~~Lv~lL~s~----~~e~A~~~L~~Ls~~~~----------~k~~I~~~G~Ip~Lv~lL~s~-~~~~k~~A~~aL~nLs 572 (744)
++.+.+.|..+ ....+.+++..|..+++ +...|+..|++..|++.|+-+ ++.....++.+|..|+
T Consensus 191 l~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lA 270 (461)
T KOG4199|consen 191 LELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALA 270 (461)
T ss_pred HHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHH
Confidence 99999888543 23567777777766653 456677788899999998764 4678888999999999
Q ss_pred CCcchHHHHHhcCCcHhHHHHhcCc------cHHHHHHHHHHHhc-CHHHHHHHHhhCCcHHHHHHHHc--CCCHHHHHH
Q 004582 573 SGDNIVYHILYLDCTSKLVRLLEDP------ILSSYCIKIIKALC-TSEARAAVAESNPCIDSIAKLLE--TGTREEQEH 643 (744)
Q Consensus 573 ~~~~n~~~iv~aG~v~~Lv~lL~~~------~l~~~al~~L~nLa-~~e~~~~i~~~~g~V~~Lv~lL~--~~s~~~~e~ 643 (744)
..++.+..++++|++..|++++.|. .+.+.|+..|+.|| +++++..|++ .|+.+.++.++. .++|.+-+.
T Consensus 271 Vr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~-~gg~~~ii~l~~~h~~~p~Vi~~ 349 (461)
T KOG4199|consen 271 VRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVE-KGGLDKIITLALRHSDDPLVIQE 349 (461)
T ss_pred HHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHH-hcChHHHHHHHHHcCCChHHHHH
Confidence 9999999999999999999999662 36789999999999 9999999999 699999999985 478999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCC--HHHHHHHHHHHHHhhh
Q 004582 644 IVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGN--SRGKETAKELIMLLDH 695 (744)
Q Consensus 644 A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s--~~~r~~A~~lL~~L~~ 695 (744)
++.++.-||-.++++...+++.|+-...++-|+... ..++++|+++++++.-
T Consensus 350 ~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~ 403 (461)
T KOG4199|consen 350 VMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVV 403 (461)
T ss_pred HHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888888887654 4688999999999973
No 16
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.36 E-value=1.4e-11 Score=128.11 Aligned_cols=183 Identities=14% Similarity=0.146 Sum_probs=159.6
Q ss_pred CcHHHHHhhc-CCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCC
Q 004582 420 TDLTSLSKLA-SRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRD 498 (744)
Q Consensus 420 ~~~~ll~~L~-s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~n 498 (744)
.+..++..|. +.++..|..|+.++.+.+.. +.++..|.+.|+++.+..+|.+ +++.+++.|+.+|-|++.+.+|
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~----p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLND----PNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCC----CChHHHHHHHHHHHhcCCChhh
Confidence 4557888887 45899999999999998764 7999999999999999999998 7999999999999999999998
Q ss_pred CcccccccchHHHHHhh-----cchhHHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcC
Q 004582 499 EMPLFHKDEICTFALFL-----DSEIMEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSS 573 (744)
Q Consensus 499 k~~iv~~Gai~~Lv~lL-----~s~~~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~ 573 (744)
+..+- .+++.+.+.. ++..+..++.+|.||+..+++...+. +.+|.++.+|.+|+..+|..++++|.|||.
T Consensus 88 ~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 88 QEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 87653 3566666643 45566789999999999988877774 479999999999999999999999999999
Q ss_pred CcchHHHHHhcCCcHhHHHHhcC---ccHHHHHHHHHHHhc
Q 004582 574 GDNIVYHILYLDCTSKLVRLLED---PILSSYCIKIIKALC 611 (744)
Q Consensus 574 ~~~n~~~iv~aG~v~~Lv~lL~~---~~l~~~al~~L~nLa 611 (744)
++.+...++.+++++.++.++.. .++...++....|+.
T Consensus 164 np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~ 204 (254)
T PF04826_consen 164 NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENIN 204 (254)
T ss_pred CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 99999999999999999999954 467889999999997
No 17
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.36 E-value=5.5e-12 Score=148.61 Aligned_cols=259 Identities=12% Similarity=0.100 Sum_probs=210.8
Q ss_pred HHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccc--------cCCCHHHHHHHHHHHHHHhcCCC-CCcccc-cccc
Q 004582 438 DAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAH--------NLCDAKAQKDGAEVLLAILSQSR-DEMPLF-HKDE 507 (744)
Q Consensus 438 ~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~--------~~~d~~~q~~A~~~L~nLs~~~~-nk~~iv-~~Ga 507 (744)
.|+..|-.+.- +++.|..|.+.|++.++-.||.-++ +..+...++.|..+|-||...+. ||..+- ..|.
T Consensus 317 aA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgf 395 (2195)
T KOG2122|consen 317 AALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGF 395 (2195)
T ss_pred HHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhH
Confidence 56666666554 5889999999999999998874322 11345678999999999987655 565554 3499
Q ss_pred hHHHHHhhcchh---HHHHHHHHHHhccChh--hhHHHHhcCCchhhhcc-cccCCHHHHHHHHHHHHHhcCC-cchHHH
Q 004582 508 ICTFALFLDSEI---MEEALEIIEVLSHQQN--YASELVASGIIPSIIKF-LDTGTRESRELAIKILCNLSSG-DNIVYH 580 (744)
Q Consensus 508 i~~Lv~lL~s~~---~e~A~~~L~~Ls~~~~--~k~~I~~~G~Ip~Lv~l-L~s~~~~~k~~A~~aL~nLs~~-~~n~~~ 580 (744)
++.+|..|.+.. ....+.+|.||+=..+ .|+.+.+.|-+..|+.. |+...+...+..+.|||||+.+ .+||..
T Consensus 396 MeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~ 475 (2195)
T KOG2122|consen 396 MEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAE 475 (2195)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchh
Confidence 999999997653 4668899999996543 37777789988888774 5666667888899999999987 689999
Q ss_pred HHh-cCCcHhHHHHhcC------ccHHHHHHHHHHHhc-----CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHH
Q 004582 581 ILY-LDCTSKLVRLLED------PILSSYCIKIIKALC-----TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVL 648 (744)
Q Consensus 581 iv~-aG~v~~Lv~lL~~------~~l~~~al~~L~nLa-----~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L 648 (744)
|-. -|++..||.+|.- -.+++.+-.+|+|.+ +...|+-+.+ ..|+..|++.|++.+-.+.-|++++|
T Consensus 476 iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~-~NCLq~LLQ~LKS~SLTiVSNaCGTL 554 (2195)
T KOG2122|consen 476 ICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRR-HNCLQTLLQHLKSHSLTIVSNACGTL 554 (2195)
T ss_pred hhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHH-hhHHHHHHHHhhhcceEEeecchhhh
Confidence 965 4999999999942 157899999999987 4566666666 79999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcCC
Q 004582 649 LSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLDHCKE 698 (744)
Q Consensus 649 ~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~~~~~ 698 (744)
|||...+++-.+.+.+.|+++.|..|+.+....+.+-++.+|++|-.++.
T Consensus 555 WNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 555 WNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred hhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999988888888876653
No 18
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.32 E-value=7.2e-11 Score=122.89 Aligned_cols=193 Identities=16% Similarity=0.195 Sum_probs=164.2
Q ss_pred cccccchHHHHHhhcch----hHHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCCcch
Q 004582 502 LFHKDEICTFALFLDSE----IMEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNI 577 (744)
Q Consensus 502 iv~~Gai~~Lv~lL~s~----~~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n 577 (744)
+.+++-+..|+.+|+.. ..+.|+.++.+.+..+.++..|.+.|+++.+..+|.++++.+|+.|+.+|.|++.+.+|
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 36788899999999743 45889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcHhHHHHhc----CccHHHHHHHHHHHhc-CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Q 004582 578 VYHILYLDCTSKLVRLLE----DPILSSYCIKIIKALC-TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLC 652 (744)
Q Consensus 578 ~~~iv~aG~v~~Lv~lL~----~~~l~~~al~~L~nLa-~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc 652 (744)
+..+-. .++.+++.+. +..++..++.+|.||+ .++.+..+.. .++.++.+|.+|+...|.+++.+|++|+
T Consensus 88 ~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~---~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 88 QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN---YIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh---hHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 998732 5777777652 3467889999999999 8777776654 5999999999999999999999999998
Q ss_pred cCCHHHHHHHHhCCcHHHHHHHhhcC-CHHHHHHHHHHHHHhhhcCCCC
Q 004582 653 HEHTKYCQLANTESIIQCVVDISVNG-NSRGKETAKELIMLLDHCKEDN 700 (744)
Q Consensus 653 ~~~~~~~~~v~~~G~i~~Lv~Ll~~~-s~~~r~~A~~lL~~L~~~~~~~ 700 (744)
.+. .....+..+++.+.++.++... +...-..+..++.++.++...+
T Consensus 163 ~np-~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 163 ENP-DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred cCH-HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 665 5567777778999999999876 5677888899888887654443
No 19
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.20 E-value=2.6e-09 Score=122.69 Aligned_cols=266 Identities=16% Similarity=0.177 Sum_probs=211.1
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCccc
Q 004582 423 TSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPL 502 (744)
Q Consensus 423 ~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~i 502 (744)
-+...|.+.++.+|..++..|+.++.++......+.+.+.++.++.+|.+ +|..+.+.|+.+|.+++.+...-..+
T Consensus 81 ~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~----~d~~Va~~A~~~L~~l~~~~~~~~~l 156 (503)
T PF10508_consen 81 FLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD----PDLSVAKAAIKALKKLASHPEGLEQL 156 (503)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC----CcHHHHHHHHHHHHHHhCCchhHHHH
Confidence 35577888999999999999999998877767778889999999999998 89999999999999999988777677
Q ss_pred ccccchHHHHHhhcch---hHHHHHHHHHHhccChh-hhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCCcchH
Q 004582 503 FHKDEICTFALFLDSE---IMEEALEIIEVLSHQQN-YASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIV 578 (744)
Q Consensus 503 v~~Gai~~Lv~lL~s~---~~e~A~~~L~~Ls~~~~-~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~ 578 (744)
+..+.+..|..++..+ ..-.+..++.+++...+ ....+.+.|.++.++.-|++.+.-++.+|+.+|..|+..+.+.
T Consensus 157 ~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~ 236 (503)
T PF10508_consen 157 FDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGL 236 (503)
T ss_pred hCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHH
Confidence 7888899999998762 23567777878876654 4666667999999999999988889999999999999999999
Q ss_pred HHHHhcCCcHhHHHHhcC----c---c-HHHHHHHHHHHhc-C-HHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHH
Q 004582 579 YHILYLDCTSKLVRLLED----P---I-LSSYCIKIIKALC-T-SEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVL 648 (744)
Q Consensus 579 ~~iv~aG~v~~Lv~lL~~----~---~-l~~~al~~L~nLa-~-~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L 648 (744)
..+.+.|+++.|+.++.+ + . +.-..+...++++ . +....... ..++..|.+++.+.++..+..|+.+|
T Consensus 237 ~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~--p~~~~~l~~~~~s~d~~~~~~A~dtl 314 (503)
T PF10508_consen 237 QYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY--PAFLERLFSMLESQDPTIREVAFDTL 314 (503)
T ss_pred HHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH--HHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 999999999999999943 2 1 2233446677777 3 32222111 34666777888899999999999999
Q ss_pred HHHhcCCHHHHHHHHhCC-c----HHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 004582 649 LSLCHEHTKYCQLANTES-I----IQCVVDISVNGNSRGKETAKELIMLLD 694 (744)
Q Consensus 649 ~~Lc~~~~~~~~~v~~~G-~----i~~Lv~Ll~~~s~~~r~~A~~lL~~L~ 694 (744)
..+|+...+...+....| . +...-....+++.+.|..+...|..+-
T Consensus 315 g~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il 365 (503)
T PF10508_consen 315 GQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASIL 365 (503)
T ss_pred HHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 999987765544424443 4 444455566788889999999987774
No 20
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.20 E-value=5.8e-10 Score=127.64 Aligned_cols=243 Identities=14% Similarity=0.087 Sum_probs=188.5
Q ss_pred CCcHHHHHhhcCCCHHHHHHHHHHHHHHhhhcc--hhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCC
Q 004582 419 GTDLTSLSKLASRPWGSQCDAVENIKKLLKDNG--QSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQS 496 (744)
Q Consensus 419 ~~~~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~--~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~ 496 (744)
+.++.++..|.+.+.++|++|+.+||+|.-++. +|+..|.+.++|+.++++|+. ..|.++++..+.+|+||++++
T Consensus 275 ggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~---t~D~ev~e~iTg~LWNLSS~D 351 (717)
T KOG1048|consen 275 GGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRH---TQDDEVRELITGILWNLSSND 351 (717)
T ss_pred ccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHh---hcchHHHHHHHHHHhcccchh
Confidence 578999999999999999999999999996554 499999999999999999996 368999999999999996640
Q ss_pred C-------------------------------------------------------CCcccc-cccchHHHHHhhcc---
Q 004582 497 R-------------------------------------------------------DEMPLF-HKDEICTFALFLDS--- 517 (744)
Q Consensus 497 ~-------------------------------------------------------nk~~iv-~~Gai~~Lv~lL~s--- 517 (744)
. .|..+. ..|.|..|+..+.+
T Consensus 352 ~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~ 431 (717)
T KOG1048|consen 352 ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQ 431 (717)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 0 011122 23666666655431
Q ss_pred ------hhHHHHHHHHHHhc------------------------------------------------------------
Q 004582 518 ------EIMEEALEIIEVLS------------------------------------------------------------ 531 (744)
Q Consensus 518 ------~~~e~A~~~L~~Ls------------------------------------------------------------ 531 (744)
...|+++.+|.||+
T Consensus 432 ~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~ 511 (717)
T KOG1048|consen 432 KSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGS 511 (717)
T ss_pred hccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCc
Confidence 12345555555554
Q ss_pred ------------------------------------cCh-----hhhHHH-HhcCCchhhhcccccCCHHHHHHHHHHHH
Q 004582 532 ------------------------------------HQQ-----NYASEL-VASGIIPSIIKFLDTGTRESRELAIKILC 569 (744)
Q Consensus 532 ------------------------------------~~~-----~~k~~I-~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~ 569 (744)
... ..+..+ ....++|+|+++|+.++..+...++.+|.
T Consensus 512 e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~Lr 591 (717)
T KOG1048|consen 512 EWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALR 591 (717)
T ss_pred eeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHh
Confidence 321 123334 35668899999999999999999999999
Q ss_pred HhcCCcchHHHHHhcCCcHhHHHHhcC--------ccHHHHHHHHHHHhc--CHHHHHHHHhhCCcHHHHHHHHcC-CCH
Q 004582 570 NLSSGDNIVYHILYLDCTSKLVRLLED--------PILSSYCIKIIKALC--TSEARAAVAESNPCIDSIAKLLET-GTR 638 (744)
Q Consensus 570 nLs~~~~n~~~iv~aG~v~~Lv~lL~~--------~~l~~~al~~L~nLa--~~e~~~~i~~~~g~V~~Lv~lL~~-~s~ 638 (744)
||+.+..|+..|. .++|+-|++.|.+ .+++..++.+|.|+. +.++...+.+ .++++.|+-+..+ .++
T Consensus 592 Nls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~-~~g~~kL~~I~~s~~S~ 669 (717)
T KOG1048|consen 592 NLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLE-IKGIPKLRLISKSQHSP 669 (717)
T ss_pred hhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHh-ccChHHHHHHhcccCCH
Confidence 9999999999887 8999999999954 246788999999999 8899999999 4889999999975 588
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 004582 639 EEQEHIVDVLLSLCHEHTKYCQLANTESI 667 (744)
Q Consensus 639 ~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~ 667 (744)
+.-+.|..+|..|.... +........|.
T Consensus 670 k~~kaAs~vL~~lW~y~-eLh~~~kk~g~ 697 (717)
T KOG1048|consen 670 KEFKAASSVLDVLWQYK-ELHFKLKKKGF 697 (717)
T ss_pred HHHHHHHHHHHHHHHHH-HHhhhHhhhhh
Confidence 99999999999987554 33344444553
No 21
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.14 E-value=1.8e-10 Score=136.22 Aligned_cols=274 Identities=12% Similarity=0.068 Sum_probs=212.4
Q ss_pred HHHHHhhcCC---CHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhc----------c-cccC--CCHHHHH-H
Q 004582 422 LTSLSKLASR---PWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLK----------D-AHNL--CDAKAQK-D 484 (744)
Q Consensus 422 ~~ll~~L~s~---~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~----------~-~~~~--~d~~~q~-~ 484 (744)
+-+++.|+-. +.+.+..|-.+|.++....++.+..-.+..+++.|=++.. . .... ....-|. .
T Consensus 238 pLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lca 317 (2195)
T KOG2122|consen 238 PLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCA 317 (2195)
T ss_pred HHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHH
Confidence 3455666543 5678888999999999777765554444344443332211 1 0000 0112233 7
Q ss_pred HHHHHHHHhcCCCCCcccccccchHHHHHhhc--ch-------------hHHHHHHHHHHhccChhh-hHHHHh-cCCch
Q 004582 485 GAEVLLAILSQSRDEMPLFHKDEICTFALFLD--SE-------------IMEEALEIIEVLSHQQNY-ASELVA-SGIIP 547 (744)
Q Consensus 485 A~~~L~nLs~~~~nk~~iv~~Gai~~Lv~lL~--s~-------------~~e~A~~~L~~Ls~~~~~-k~~I~~-~G~Ip 547 (744)
|+.+|..++.+++.|..|-+.|++..+.+||. .. ....|.-+|-||+..+.+ |..+.. .|++.
T Consensus 318 A~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMe 397 (2195)
T KOG2122|consen 318 ALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFME 397 (2195)
T ss_pred HHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHH
Confidence 88899999999999999999999999999863 11 124688999999988765 777774 79999
Q ss_pred hhhcccccCCHHHHHHHHHHHHHhcCC-cch-HHHHHhcCCcHhHHHHh---cCccHHHHHHHHHHHhc--CHHHHHHHH
Q 004582 548 SIIKFLDTGTRESRELAIKILCNLSSG-DNI-VYHILYLDCTSKLVRLL---EDPILSSYCIKIIKALC--TSEARAAVA 620 (744)
Q Consensus 548 ~Lv~lL~s~~~~~k~~A~~aL~nLs~~-~~n-~~~iv~aG~v~~Lv~lL---~~~~l~~~al~~L~nLa--~~e~~~~i~ 620 (744)
.+|..|.+..+++...-+.+|.|||=. +.| +..+-+.|-|..|+..- ..+......+.+||||+ +.+|+.+|.
T Consensus 398 avVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iC 477 (2195)
T KOG2122|consen 398 AVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEIC 477 (2195)
T ss_pred HHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhh
Confidence 999999999999999999999999955 344 44456679999998864 33577899999999999 899999999
Q ss_pred hhCCcHHHHHHHHcC----CCHHHHHHHHHHHHHHhcC---CHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 004582 621 ESNPCIDSIAKLLET----GTREEQEHIVDVLLSLCHE---HTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLL 693 (744)
Q Consensus 621 ~~~g~V~~Lv~lL~~----~s~~~~e~A~~~L~~Lc~~---~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L 693 (744)
...|++..||.+|.- ..-.+.|+|-+||.++.+. .+.+++++.+...+..|+..+++.+-.+--+|+..||+|
T Consensus 478 aVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNL 557 (2195)
T KOG2122|consen 478 AVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNL 557 (2195)
T ss_pred cccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhh
Confidence 989999999999963 3567889999999998743 557889999999999999999999999999999999999
Q ss_pred hh
Q 004582 694 DH 695 (744)
Q Consensus 694 ~~ 695 (744)
..
T Consensus 558 SA 559 (2195)
T KOG2122|consen 558 SA 559 (2195)
T ss_pred hc
Confidence 73
No 22
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.14 E-value=5.2e-10 Score=102.17 Aligned_cols=114 Identities=18% Similarity=0.325 Sum_probs=102.9
Q ss_pred HHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCCcHhHHHHhcC--ccHHHHHHHHHHHhc-C-H
Q 004582 539 ELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSG-DNIVYHILYLDCTSKLVRLLED--PILSSYCIKIIKALC-T-S 613 (744)
Q Consensus 539 ~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~-~~n~~~iv~aG~v~~Lv~lL~~--~~l~~~al~~L~nLa-~-~ 613 (744)
.+.+.|+++.|+++|.+++...+..|+.+|.+++.+ +++...+++.|++|.|+++|.+ +.++..|+++|+||+ . +
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 356889999999999999999999999999999998 7788888999999999999975 478999999999999 4 4
Q ss_pred HHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Q 004582 614 EARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCH 653 (744)
Q Consensus 614 e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~ 653 (744)
..+..+.+ .|+++.|++++..++..+++.|+++|.+||.
T Consensus 82 ~~~~~~~~-~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLE-AGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHH-CCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 66666677 7999999999999999999999999999973
No 23
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.09 E-value=2.4e-09 Score=97.75 Aligned_cols=114 Identities=15% Similarity=0.118 Sum_probs=105.4
Q ss_pred HHHhcCCcHhHHHHhcCc--cHHHHHHHHHHHhc-C-HHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Q 004582 580 HILYLDCTSKLVRLLEDP--ILSSYCIKIIKALC-T-SEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEH 655 (744)
Q Consensus 580 ~iv~aG~v~~Lv~lL~~~--~l~~~al~~L~nLa-~-~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~ 655 (744)
.+++.|+++.|+++|.++ .++..++.+|.+++ . ++.+..+.+ .|+++.|+++|.+.++.++.+|+++|.+|+.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVE-AGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 467899999999999765 78999999999999 4 899999998 699999999999999999999999999999988
Q ss_pred HHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 004582 656 TKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLD 694 (744)
Q Consensus 656 ~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~ 694 (744)
+.....+.+.|+++.|+.++.+++.++++.|.++|..|.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 888888899999999999999999999999999998874
No 24
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=1.2e-08 Score=110.06 Aligned_cols=265 Identities=16% Similarity=0.120 Sum_probs=180.0
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcccc
Q 004582 424 SLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPLF 503 (744)
Q Consensus 424 ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~iv 503 (744)
++..|...+.+.-.-.+.-|+.++-. .+|+..+.+.|.|+.|+++... .++..+...+..|+|++-+..++..|+
T Consensus 309 LVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~----~h~dL~~~tl~LlfNlSFD~glr~KMv 383 (791)
T KOG1222|consen 309 LVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPI----QHPDLRKATLMLLFNLSFDSGLRPKMV 383 (791)
T ss_pred HHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCC----CCHHHHHHHHHHhhhccccccccHHHh
Confidence 55666666777777777788888765 5889999999999999999987 789999999999999999999999999
Q ss_pred cccchHHHHHhhcchhH-HHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHH-----------------------
Q 004582 504 HKDEICTFALFLDSEIM-EEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRE----------------------- 559 (744)
Q Consensus 504 ~~Gai~~Lv~lL~s~~~-e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~----------------------- 559 (744)
..|.+|.|+.+|++... .-|+..|+.+|.++..|..+.-..+|+.+.+.+-++...
T Consensus 384 ~~GllP~l~~ll~~d~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlv 463 (791)
T KOG1222|consen 384 NGGLLPHLASLLDSDTKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLV 463 (791)
T ss_pred hccchHHHHHHhCCcccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEE
Confidence 99999999999988764 568888888888888887777777777777765444211
Q ss_pred ---------------------------------------------------------HHHHHHHHHHHhcCCcchHHHHH
Q 004582 560 ---------------------------------------------------------SRELAIKILCNLSSGDNIVYHIL 582 (744)
Q Consensus 560 ---------------------------------------------------------~k~~A~~aL~nLs~~~~n~~~iv 582 (744)
.-..++++|.||...+-.-..++
T Consensus 464 ceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~il 543 (791)
T KOG1222|consen 464 CEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKIL 543 (791)
T ss_pred ecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHH
Confidence 11122333333333222222222
Q ss_pred h-cCCcHhHHHHhcC----ccHHHHHHHHHHHhcCHHHHHHHHhhCCcHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCC
Q 004582 583 Y-LDCTSKLVRLLED----PILSSYCIKIIKALCTSEARAAVAESNPCIDSIAKLLET--GTREEQEHIVDVLLSLCHEH 655 (744)
Q Consensus 583 ~-aG~v~~Lv~lL~~----~~l~~~al~~L~nLa~~e~~~~i~~~~g~V~~Lv~lL~~--~s~~~~e~A~~~L~~Lc~~~ 655 (744)
+ ...||-+-..|.. .+++-..+.+++.+|..+.+..+..-+|.|+.|+++|.. .+.+..-..+.+++++-.+.
T Consensus 544 q~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He 623 (791)
T KOG1222|consen 544 QSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHE 623 (791)
T ss_pred hhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH
Confidence 1 2333333333321 123333333334444122223333336899999999975 45666677888888888775
Q ss_pred HHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 004582 656 TKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLL 693 (744)
Q Consensus 656 ~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L 693 (744)
....-.+.+...-..|++++.+.+.++|+.+-..|-.+
T Consensus 624 ~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIi 661 (791)
T KOG1222|consen 624 LTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDII 661 (791)
T ss_pred HHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 44444445555777899999999999888766555433
No 25
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.08 E-value=8.2e-11 Score=87.51 Aligned_cols=39 Identities=31% Similarity=0.724 Sum_probs=31.2
Q ss_pred cccccccCCCceecCCCccccHHHHHHHHccCC---CCCCCC
Q 004582 267 CSISLRLMYDPVVIASGKTFERVWIQKWFNAGH---TTCPKT 305 (744)
Q Consensus 267 CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~~~~---~~cP~t 305 (744)
||||+++|+|||+++|||+||+.||++||+... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998643 369876
No 26
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.04 E-value=1.7e-10 Score=112.78 Aligned_cols=61 Identities=28% Similarity=0.549 Sum_probs=53.4
Q ss_pred CCCCCccccccccccCCCceecCCCccccHHHHHHHHcc---------------CCCCCCCCCCCCCCCCCcccHH
Q 004582 259 LEPPEEFKCSISLRLMYDPVVIASGKTFERVWIQKWFNA---------------GHTTCPKTHMRLDNVSVTPNVA 319 (744)
Q Consensus 259 ~~~p~~f~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~~---------------~~~~cP~t~~~l~~~~l~pn~~ 319 (744)
.....+|.||||++.++|||+++|||.||+.||.+|+.. +...||.|+.++....++|.+.
T Consensus 13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 345578999999999999999999999999999999842 2457999999999999999864
No 27
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=4.7e-10 Score=111.86 Aligned_cols=77 Identities=29% Similarity=0.413 Sum_probs=72.3
Q ss_pred CCCCCCccccccccccCCCceecCCCccccHHHHHHHHccCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 004582 258 VLEPPEEFKCSISLRLMYDPVVIASGKTFERVWIQKWFNAGHTTCPKTHMRLDNVSVTPNVAIKELISQWCLKHGIS 334 (744)
Q Consensus 258 ~~~~p~~f~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~~~ 334 (744)
..++|+.++|.|+.+||+|||++++|.||+|..|+++++.-....|+|+.+|...+++||++|+..|..|...|++.
T Consensus 205 ~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~ 281 (284)
T KOG4642|consen 205 KREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWA 281 (284)
T ss_pred cccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhcccc
Confidence 35789999999999999999999999999999999999987778999999999999999999999999999999864
No 28
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.92 E-value=1.2e-09 Score=119.11 Aligned_cols=70 Identities=16% Similarity=0.332 Sum_probs=63.6
Q ss_pred CCCCccccccccccCCCceecCCCccccHHHHHHHHccCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHH
Q 004582 260 EPPEEFKCSISLRLMYDPVVIASGKTFERVWIQKWFNAGHTTCPKTHMRLDNVSVTPNVAIKELISQWCLK 330 (744)
Q Consensus 260 ~~p~~f~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~ 330 (744)
.+...|.||||+++|.+||+++|||+||..||..|+.. ...||.|+.++....+.+|+.|.++|+.|...
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~ 91 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKNL 91 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHHh
Confidence 34577999999999999999999999999999999975 45899999999888999999999999999654
No 29
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=2e-08 Score=108.29 Aligned_cols=195 Identities=16% Similarity=0.252 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcccccccchHHHHHhhcchhH---HHHHHHHHHhccChhhhHHHHhcCCchhhhccccc
Q 004582 479 AKAQKDGAEVLLAILSQSRDEMPLFHKDEICTFALFLDSEIM---EEALEIIEVLSHQQNYASELVASGIIPSIIKFLDT 555 (744)
Q Consensus 479 ~~~q~~A~~~L~nLs~~~~nk~~iv~~Gai~~Lv~lL~s~~~---e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s 555 (744)
.+..+.|+..|+|++.+......|...+.|..||..|+..+. ......|..||...+||..+++.|.+..|+++...
T Consensus 277 eqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~ 356 (791)
T KOG1222|consen 277 EQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPI 356 (791)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCC
Confidence 456678999999999998888888899999999999986654 45667788999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcCccHHHHHHHHHHHhc-CHHHHHHHHhhCCcHHHHHHHHc
Q 004582 556 GTRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLEDPILSSYCIKIIKALC-TSEARAAVAESNPCIDSIAKLLE 634 (744)
Q Consensus 556 ~~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~~l~~~al~~L~nLa-~~e~~~~i~~~~g~V~~Lv~lL~ 634 (744)
..++.+...+..|+|||.+..++..||..|.+|.|+.+|.+..-..-|+.+|..++ +...+..+..+ .||+.+.+.+-
T Consensus 357 ~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~dD~~K~MfayT-dci~~lmk~v~ 435 (791)
T KOG1222|consen 357 QHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLSCDDDAKAMFAYT-DCIKLLMKDVL 435 (791)
T ss_pred CCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhccCcHHHHHHHHH-HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988877788999999999 88888777775 89999998775
Q ss_pred CC-CHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHh
Q 004582 635 TG-TREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDIS 675 (744)
Q Consensus 635 ~~-s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll 675 (744)
.+ ..++-...++.-.+||.+. .+.+.+.+..++..|.+..
T Consensus 436 ~~~~~~vdl~lia~ciNl~lnk-RNaQlvceGqgL~~LM~ra 476 (791)
T KOG1222|consen 436 SGTGSEVDLALIALCINLCLNK-RNAQLVCEGQGLDLLMERA 476 (791)
T ss_pred hcCCceecHHHHHHHHHHHhcc-ccceEEecCcchHHHHHHH
Confidence 43 3333333333336666543 3445555444666665543
No 30
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.83 E-value=1.4e-09 Score=86.23 Aligned_cols=44 Identities=34% Similarity=0.636 Sum_probs=32.1
Q ss_pred CccccccccccCCCceec-CCCccccHHHHHHHHc-cCCCCCCCCC
Q 004582 263 EEFKCSISLRLMYDPVVI-ASGKTFERVWIQKWFN-AGHTTCPKTH 306 (744)
Q Consensus 263 ~~f~CPI~~~~m~dPV~~-~~G~ty~r~~I~~w~~-~~~~~cP~t~ 306 (744)
-.|.||||+..|+|||.. .|||+|||++|.+|+. .+...||++|
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 468999999999999996 8999999999999994 4566799965
No 31
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.77 E-value=3.6e-07 Score=105.11 Aligned_cols=264 Identities=12% Similarity=0.123 Sum_probs=200.4
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCc-cc
Q 004582 424 SLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEM-PL 502 (744)
Q Consensus 424 ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~-~i 502 (744)
++..|.+.+.+.-..++..|..+.+.-.. ..+ ..+..+.|...|.+ .++.++..++..|.++..+..... .+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~--~~l-~~~~~~~L~~gL~h----~~~~Vr~l~l~~l~~~~~~~~~~~~~~ 115 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSP--DSL-LPQYQPFLQRGLTH----PSPKVRRLALKQLGRIARHSEGAAQLL 115 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCH--HHH-HHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHhcCCHHHHHHh
Confidence 44556666777777888888888864321 122 45778888899988 789999999999999988766544 45
Q ss_pred ccccchHHHHHhhcch---hHHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCCcch-H
Q 004582 503 FHKDEICTFALFLDSE---IMEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNI-V 578 (744)
Q Consensus 503 v~~Gai~~Lv~lL~s~---~~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n-~ 578 (744)
.+.+.++.++..|..+ +.+.|+.+|.+|+.++.+-..+.+.+.++.|..++...+..+|-.+..++.+++...+. .
T Consensus 116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence 5789999999999655 45789999999999998888888888999999999988888999999999999877554 4
Q ss_pred HHHHhcCCcHhHHHHhcCcc--HHHHHHHHHHHhc-CHHHHHHHHhhCCcHHHHHHHHcC--CCH---HHH-HHHHHHHH
Q 004582 579 YHILYLDCTSKLVRLLEDPI--LSSYCIKIIKALC-TSEARAAVAESNPCIDSIAKLLET--GTR---EEQ-EHIVDVLL 649 (744)
Q Consensus 579 ~~iv~aG~v~~Lv~lL~~~~--l~~~al~~L~nLa-~~e~~~~i~~~~g~V~~Lv~lL~~--~s~---~~~-e~A~~~L~ 649 (744)
..+...|.++.++..|.+.+ ++..|+.+|..|| ++.|...+.+ .|+++.|+.++.. .+| ... -..+....
T Consensus 196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~-~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g 274 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQ-QGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG 274 (503)
T ss_pred HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHh-CCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence 45567899999999998766 4789999999999 9999999999 6999999999964 334 111 12223444
Q ss_pred HHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 004582 650 SLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLDHC 696 (744)
Q Consensus 650 ~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~~~ 696 (744)
+++..++... .-.-...+..|.+++.+.++..+..|...+-.+...
T Consensus 275 ~la~~~~~~v-~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst 320 (503)
T PF10508_consen 275 NLARVSPQEV-LELYPAFLERLFSMLESQDPTIREVAFDTLGQIGST 320 (503)
T ss_pred HHHhcChHHH-HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCC
Confidence 4544332211 111123566677778888999999999888877643
No 32
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.72 E-value=2.8e-07 Score=99.72 Aligned_cols=218 Identities=18% Similarity=0.160 Sum_probs=163.9
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhh------CCChHHHHHHhcccccCCCHHHHHHHHHHHHHHh
Q 004582 420 TDLTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFL------NSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAIL 493 (744)
Q Consensus 420 ~~~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~------~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs 493 (744)
.+..++..+ +.+.+.....+..|-.+..+++.....+.. ...+.+++++|.+ +|..++..|+.+|..+.
T Consensus 59 ~~l~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~----~D~~i~~~a~~iLt~Ll 133 (312)
T PF03224_consen 59 LFLNLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDR----NDSFIQLKAAFILTSLL 133 (312)
T ss_dssp ---HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-----SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcC----CCHHHHHHHHHHHHHHH
Confidence 445677767 667889999999999999887755544443 2367888888877 79999999999999998
Q ss_pred cCCCCCcccccccchHHHHHhhcc----hh---HHHHHHHHHHhccChhhhHHHHhcCCchhhhccc-----cc--CCHH
Q 004582 494 SQSRDEMPLFHKDEICTFALFLDS----EI---MEEALEIIEVLSHQQNYASELVASGIIPSIIKFL-----DT--GTRE 559 (744)
Q Consensus 494 ~~~~nk~~iv~~Gai~~Lv~lL~s----~~---~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL-----~s--~~~~ 559 (744)
.....+......+.++.++..|.+ +. ...|+.+|.+|...+++|..+.+.|+++.|+.+| .+ .+.+
T Consensus 134 ~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q 213 (312)
T PF03224_consen 134 SQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ 213 (312)
T ss_dssp TSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred HcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence 877666554446788888888764 22 2678999999999999999999999999999999 22 3347
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcC---ccHHHHHHHHHHHhc-CHH--HHHHHHhhCCcHHHHHHHH
Q 004582 560 SRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLED---PILSSYCIKIIKALC-TSE--ARAAVAESNPCIDSIAKLL 633 (744)
Q Consensus 560 ~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~---~~l~~~al~~L~nLa-~~e--~~~~i~~~~g~V~~Lv~lL 633 (744)
.+-.++-++|-||.+++....+...+.||.|++++.+ +.+.+-++++|.||. ... ....|+. .| +..+++.|
T Consensus 214 l~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~-~~-~l~~l~~L 291 (312)
T PF03224_consen 214 LQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVL-CG-LLKTLQNL 291 (312)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHH-H--HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHH-cc-HHHHHHHH
Confidence 8899999999999999999999999999999999954 579999999999999 444 8888888 36 45556666
Q ss_pred cC---CCHHHHHHH
Q 004582 634 ET---GTREEQEHI 644 (744)
Q Consensus 634 ~~---~s~~~~e~A 644 (744)
.. ++++..+.-
T Consensus 292 ~~rk~~Dedl~edl 305 (312)
T PF03224_consen 292 SERKWSDEDLTEDL 305 (312)
T ss_dssp HSS--SSHHHHHHH
T ss_pred hcCCCCCHHHHHHH
Confidence 43 577776643
No 33
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=5.3e-07 Score=103.41 Aligned_cols=250 Identities=14% Similarity=0.164 Sum_probs=195.1
Q ss_pred cHHHHHhhcCC-CHHHHHHHHHHHHHHh-hhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhc-CCC
Q 004582 421 DLTSLSKLASR-PWGSQCDAVENIKKLL-KDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILS-QSR 497 (744)
Q Consensus 421 ~~~ll~~L~s~-~~e~q~~Al~~Lr~La-k~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~-~~~ 497 (744)
.-.+|..|... ++..|.+|+..|+.+. -.+.+.-..+--.-++|.||.+|+.. .+.+++..|+.+|.+|+. .++
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E---~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHE---HNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHhhccc
Confidence 44688888655 8888999999998654 44444444333456899999999984 689999999999999998 466
Q ss_pred CCcccccccchHHHHHhhcc----hhHHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcC
Q 004582 498 DEMPLFHKDEICTFALFLDS----EIMEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSS 573 (744)
Q Consensus 498 nk~~iv~~Gai~~Lv~lL~s----~~~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~ 573 (744)
.-..+++.++||.|++-|-. .+.|.++.+|..++. ..-..|..+|+|-..+..|+-=+..+++.|+.+-.|+|.
T Consensus 246 S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR--~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 246 SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISR--RHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHh--hccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77778899999999988743 356889999999987 334566689999999999988888999999999999986
Q ss_pred C--cchHHHHHhcCCcHhHHHHhc--CccHHHHHHHHHHHhc-----CHHHHHHHHhhCCcHHHHHHHHcCC----CHHH
Q 004582 574 G--DNIVYHILYLDCTSKLVRLLE--DPILSSYCIKIIKALC-----TSEARAAVAESNPCIDSIAKLLETG----TREE 640 (744)
Q Consensus 574 ~--~~n~~~iv~aG~v~~Lv~lL~--~~~l~~~al~~L~nLa-----~~e~~~~i~~~~g~V~~Lv~lL~~~----s~~~ 640 (744)
. ++.-..+ ..++|.|..+|. |...++.++.++..++ .++--+.+.. .|.|....+||... +...
T Consensus 324 si~sd~f~~v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s-~dLi~~~~qLlsvt~t~Ls~~~ 400 (1051)
T KOG0168|consen 324 SIRSDEFHFV--MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCS-HDLITNIQQLLSVTPTILSNGT 400 (1051)
T ss_pred cCCCccchHH--HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhc-hhHHHHHHHHHhcCcccccccc
Confidence 4 3322222 367999999995 4578888888888887 3556667777 79999999999754 2344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcC
Q 004582 641 QEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNG 678 (744)
Q Consensus 641 ~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~ 678 (744)
.--.+..|..+|++++-....+...++...|..++...
T Consensus 401 ~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 401 YTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred hhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 56677888888888888888888999999999888644
No 34
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.71 E-value=7.2e-07 Score=99.00 Aligned_cols=270 Identities=15% Similarity=0.084 Sum_probs=195.8
Q ss_pred cHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCc
Q 004582 421 DLTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEM 500 (744)
Q Consensus 421 ~~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~ 500 (744)
+..|+..|...++-++..|+..|..++..+..+.......-.+.-|...|++. .+...+..|+.+|..+...+..|.
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~---~~~~~~~~~v~~L~~LL~~~~~R~ 179 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNI---TNNDYVQTAARCLQMLLRVDEYRF 179 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhcc---CCcchHHHHHHHHHHHhCCchHHH
Confidence 34677888888899999999999999865543211111111233444555542 346788889999999999999999
Q ss_pred ccccccchHHHHHhhcch---h--HHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCH-HHHHHHHHHHHHhcCC
Q 004582 501 PLFHKDEICTFALFLDSE---I--MEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTR-ESRELAIKILCNLSSG 574 (744)
Q Consensus 501 ~iv~~Gai~~Lv~lL~s~---~--~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~-~~k~~A~~aL~nLs~~ 574 (744)
.+.+.++++.|+.+|+.. . .-+++-+++.||..++........+.||.|+++++.... .+.+.++.+|.||...
T Consensus 180 ~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~ 259 (429)
T cd00256 180 AFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISK 259 (429)
T ss_pred HHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 999999999999999752 2 367999999999988877766678999999999987554 5888999999999874
Q ss_pred c-------chHHHHHhcCCcHhHHHHh----cCccHH---------------------HHHHHHHH-Hhc-C--------
Q 004582 575 D-------NIVYHILYLDCTSKLVRLL----EDPILS---------------------SYCIKIIK-ALC-T-------- 612 (744)
Q Consensus 575 ~-------~n~~~iv~aG~v~~Lv~lL----~~~~l~---------------------~~al~~L~-nLa-~-------- 612 (744)
. .....|+..|+++.+-.+. .|+++. +++..+.. +|. +
T Consensus 260 ~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~F 339 (429)
T cd00256 260 RVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKF 339 (429)
T ss_pred ccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchH
Confidence 3 2345667777755444443 234432 12222211 122 1
Q ss_pred -HHHHHHHHhhC-CcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHH
Q 004582 613 -SEARAAVAESN-PCIDSIAKLLE-TGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKEL 689 (744)
Q Consensus 613 -~e~~~~i~~~~-g~V~~Lv~lL~-~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~l 689 (744)
.||...+-+.+ ..+..|+++|. +.++.+..-|+.=+..++..-+..+..+.+-|+=..+.+++.+.++++|..|..+
T Consensus 340 W~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~a 419 (429)
T cd00256 340 WRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLA 419 (429)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence 24555555433 34578999995 5678888888888899998877777888899999999999999999999999999
Q ss_pred HHHh
Q 004582 690 IMLL 693 (744)
Q Consensus 690 L~~L 693 (744)
++.|
T Consensus 420 vQkl 423 (429)
T cd00256 420 VQKL 423 (429)
T ss_pred HHHH
Confidence 8765
No 35
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.70 E-value=1e-08 Score=75.16 Aligned_cols=38 Identities=34% Similarity=0.729 Sum_probs=33.5
Q ss_pred cccccccCCCc-eecCCCccccHHHHHHHHccCCCCCCCC
Q 004582 267 CSISLRLMYDP-VVIASGKTFERVWIQKWFNAGHTTCPKT 305 (744)
Q Consensus 267 CPI~~~~m~dP-V~~~~G~ty~r~~I~~w~~~~~~~cP~t 305 (744)
||||.+.++|| |+++|||+|++.||++|++. +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 67899999999999999988 6899986
No 36
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.65 E-value=1e-06 Score=94.57 Aligned_cols=267 Identities=14% Similarity=0.138 Sum_probs=186.4
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCH---HHHHHHHHHHH------------
Q 004582 426 SKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDA---KAQKDGAEVLL------------ 490 (744)
Q Consensus 426 ~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~---~~q~~A~~~L~------------ 490 (744)
+...+.+.++-.+...+|.+++.+|.++|..+.+.|+-..++++|+..+...++ +....+...|.
T Consensus 94 q~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq 173 (604)
T KOG4500|consen 94 QTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQ 173 (604)
T ss_pred hCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHH
Confidence 334566778888888889999999999999999988877777777654422111 11111111111
Q ss_pred ----------------------------------------------------------------------------HHhc
Q 004582 491 ----------------------------------------------------------------------------AILS 494 (744)
Q Consensus 491 ----------------------------------------------------------------------------nLs~ 494 (744)
..+.
T Consensus 174 ~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~ae 253 (604)
T KOG4500|consen 174 VADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAE 253 (604)
T ss_pred HHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhc
Confidence 1122
Q ss_pred CCCCCcccccccchHHHHHhhcc-h---hH-------HHHHHHHHHhccChhhhHHHHhcC-CchhhhcccccCCHHHHH
Q 004582 495 QSRDEMPLFHKDEICTFALFLDS-E---IM-------EEALEIIEVLSHQQNYASELVASG-IIPSIIKFLDTGTRESRE 562 (744)
Q Consensus 495 ~~~nk~~iv~~Gai~~Lv~lL~s-~---~~-------e~A~~~L~~Ls~~~~~k~~I~~~G-~Ip~Lv~lL~s~~~~~k~ 562 (744)
++..+..++++|.+.-+++++.. . .. ..++.....|...++.-..+.+.+ .+..++.-+.+.+.....
T Consensus 254 nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t 333 (604)
T KOG4500|consen 254 NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLIT 333 (604)
T ss_pred CcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHH
Confidence 35557777788888888888753 1 11 224444444444455544444444 788888889999999999
Q ss_pred HHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhc-----Cc--cHHHHHHHHHHHhc-CHHHHHHHHhhCCcHHHHHHHHc
Q 004582 563 LAIKILCNLSSGDNIVYHILYLDCTSKLVRLLE-----DP--ILSSYCIKIIKALC-TSEARAAVAESNPCIDSIAKLLE 634 (744)
Q Consensus 563 ~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~-----~~--~l~~~al~~L~nLa-~~e~~~~i~~~~g~V~~Lv~lL~ 634 (744)
.+.-+|.|++..++++..+++.|.+..|++.|. ++ ..+..|+++|+||+ .-.++..+.. +|++..++..++
T Consensus 334 ~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~-aGvteaIL~~lk 412 (604)
T KOG4500|consen 334 MGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAP-AGVTEAILLQLK 412 (604)
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccc-cchHHHHHHHHH
Confidence 999999999999999999999999999999983 23 35788999999999 8889999999 699999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCH-HHHHHHHhCCcHHHHHHHhhcCCHH-HHHHHHHHHHHh
Q 004582 635 TGTREEQEHIVDVLLSLCHEHT-KYCQLANTESIIQCVVDISVNGNSR-GKETAKELIMLL 693 (744)
Q Consensus 635 ~~s~~~~e~A~~~L~~Lc~~~~-~~~~~v~~~G~i~~Lv~Ll~~~s~~-~r~~A~~lL~~L 693 (744)
..+|.++-.-++.|..+--.-+ ..+++..+...+..|++-.++.+-. +.-....+|..|
T Consensus 413 ~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~l 473 (604)
T KOG4500|consen 413 LASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGL 473 (604)
T ss_pred hcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHH
Confidence 9999988888888776643322 2334444555677777777766543 444444444443
No 37
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.64 E-value=5.9e-07 Score=97.28 Aligned_cols=246 Identities=18% Similarity=0.203 Sum_probs=166.1
Q ss_pred HHHHHHHhhhcchhhHHHhh---CCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcccccc-------cchH
Q 004582 440 VENIKKLLKDNGQSRHLAFL---NSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPLFHK-------DEIC 509 (744)
Q Consensus 440 l~~Lr~Lak~~~~~r~~i~~---~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~iv~~-------Gai~ 509 (744)
+..|+.+-+...+.|..+.+ .+....++.+|+.. ..+.++.+..+..+..+...+..+..++.. ..+.
T Consensus 31 ~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~ 108 (312)
T PF03224_consen 31 LSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYS 108 (312)
T ss_dssp HHHHHHHHHHHH-------------------HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HH
T ss_pred HHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHH
Confidence 34445554444455544443 24577788888762 257899999999999999888776655422 2678
Q ss_pred HHHHhhcchh---HHHHHHHHHHhccChhhhHHHHhcCCchhhhccccc----CCHHHHHHHHHHHHHhcCCcchHHHHH
Q 004582 510 TFALFLDSEI---MEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDT----GTRESRELAIKILCNLSSGDNIVYHIL 582 (744)
Q Consensus 510 ~Lv~lL~s~~---~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s----~~~~~k~~A~~aL~nLs~~~~n~~~iv 582 (744)
+++.+++++. ...|+.+|..|......+..-...+.++.+++.|.+ .+.+.+..|+.+|.+|...++.|..+.
T Consensus 109 ~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~ 188 (312)
T PF03224_consen 109 PFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFW 188 (312)
T ss_dssp HHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHH
Confidence 8888887653 467888888887776665554445677888887765 344677999999999999999999999
Q ss_pred hcCCcHhHHHHh------cCc---cHHHHHHHHHHHhc-CHHHHHHHHhhCCcHHHHHHHHcC-CCHHHHHHHHHHHHHH
Q 004582 583 YLDCTSKLVRLL------EDP---ILSSYCIKIIKALC-TSEARAAVAESNPCIDSIAKLLET-GTREEQEHIVDVLLSL 651 (744)
Q Consensus 583 ~aG~v~~Lv~lL------~~~---~l~~~al~~L~nLa-~~e~~~~i~~~~g~V~~Lv~lL~~-~s~~~~e~A~~~L~~L 651 (744)
+.|+++.|+.+| ..+ .+.-+++-+++.|+ +++....+.. .+.|+.|+++++. ...++..-++++|.|+
T Consensus 189 ~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl 267 (312)
T PF03224_consen 189 KSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNK-KYLIPLLADILKDSIKEKVVRVSLAILRNL 267 (312)
T ss_dssp THHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHT-TSHHHHHHHHHHH--SHHHHHHHHHHHHHT
T ss_pred hcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhc-cchHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 999999999999 222 46789999999999 9999999998 5899999999974 5788999999999999
Q ss_pred hcCCHH-HHHHHHhCCcHHHHHHHhhc--CCHHHHHHHHH
Q 004582 652 CHEHTK-YCQLANTESIIQCVVDISVN--GNSRGKETAKE 688 (744)
Q Consensus 652 c~~~~~-~~~~v~~~G~i~~Lv~Ll~~--~s~~~r~~A~~ 688 (744)
...+.. ....+...|+++.+-.|... ++++..+--..
T Consensus 268 ~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~ 307 (312)
T PF03224_consen 268 LSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDLEF 307 (312)
T ss_dssp TSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHH
T ss_pred HhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 877654 67777888887777777653 35555554333
No 38
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.61 E-value=1e-06 Score=94.65 Aligned_cols=255 Identities=13% Similarity=0.112 Sum_probs=189.8
Q ss_pred HHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCC----HHHHHHHHHHHHHHhcCCCCCccccccc-chHHHHHh
Q 004582 440 VENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCD----AKAQKDGAEVLLAILSQSRDEMPLFHKD-EICTFALF 514 (744)
Q Consensus 440 l~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d----~~~q~~A~~~L~nLs~~~~nk~~iv~~G-ai~~Lv~l 514 (744)
+.++-.-+.+|+..+..+++.|.++-++.+++....-.+ ...-+.++....-+...++.-..+...| .+..+++.
T Consensus 244 ~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw 323 (604)
T KOG4500|consen 244 IFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESW 323 (604)
T ss_pred HHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHH
Confidence 333333445678889999999999999999976321111 1222334444444455555544444444 78888888
Q ss_pred hcchhH---HHHHHHHHHhccChhhhHHHHhcCCchhhhccccc-----CCHHHHHHHHHHHHHhcCCcchHHHHHhcCC
Q 004582 515 LDSEIM---EEALEIIEVLSHQQNYASELVASGIIPSIIKFLDT-----GTRESRELAIKILCNLSSGDNIVYHILYLDC 586 (744)
Q Consensus 515 L~s~~~---e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s-----~~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~ 586 (744)
+++.+. ..+.-++.|++..+.+...+++.|.+..|+.+|.. |+.+.+.+++.||.||.....|+..++.+|+
T Consensus 324 ~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGv 403 (604)
T KOG4500|consen 324 FRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGV 403 (604)
T ss_pred hcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccch
Confidence 877643 45777789999999999999999999999998854 6779999999999999999999999999999
Q ss_pred cHhHHHHhc--CccHHHHHHHHHHHhc-CHH-HHHHHHhhCCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCC--HHHH
Q 004582 587 TSKLVRLLE--DPILSSYCIKIIKALC-TSE-ARAAVAESNPCIDSIAKLLETGT-REEQEHIVDVLLSLCHEH--TKYC 659 (744)
Q Consensus 587 v~~Lv~lL~--~~~l~~~al~~L~nLa-~~e-~~~~i~~~~g~V~~Lv~lL~~~s-~~~~e~A~~~L~~Lc~~~--~~~~ 659 (744)
+..++.++. .|.++-.-+.+|+.+- ..+ ..-++.+....+..||+.-++.+ ..+.....+.|..+-.++ ....
T Consensus 404 teaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~ 483 (604)
T KOG4500|consen 404 TEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVI 483 (604)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhH
Confidence 999999984 4778888889998888 444 55566665556677777766543 346677778888888773 3556
Q ss_pred HHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 004582 660 QLANTESIIQCVVDISVNGNSRGKETAKELIMLLD 694 (744)
Q Consensus 660 ~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~ 694 (744)
..+-+.|+|..+|.+.....-..+..|.-+|..+.
T Consensus 484 ~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~ 518 (604)
T KOG4500|consen 484 LTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTE 518 (604)
T ss_pred hhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHH
Confidence 77788999999999998888878877777666554
No 39
>PRK09687 putative lyase; Provisional
Probab=98.57 E-value=3e-06 Score=90.17 Aligned_cols=229 Identities=10% Similarity=0.050 Sum_probs=128.9
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCC
Q 004582 420 TDLTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDE 499 (744)
Q Consensus 420 ~~~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk 499 (744)
....++..|.+.+..+|..|+..|..+-. ..+++.+.+++.+ .|+.++..|+++|..+-.....
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~----~d~~vR~~A~~aLg~lg~~~~~- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSS----KNPIERDIGADILSQLGMAKRC- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhC----CCHHHHHHHHHHHHhcCCCccc-
Confidence 34567788888899999999998887642 3567778888877 7899999999999987442221
Q ss_pred cccccccchHHHHHh-hcch---hHHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCCc
Q 004582 500 MPLFHKDEICTFALF-LDSE---IMEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSGD 575 (744)
Q Consensus 500 ~~iv~~Gai~~Lv~l-L~s~---~~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~ 575 (744)
..-+++.|..+ ++.+ +...|+.+|.++....... ...+++.+...+.+.+..+|..|+.+|..+.
T Consensus 88 ----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~--- 156 (280)
T PRK09687 88 ----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN--- 156 (280)
T ss_pred ----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC---
Confidence 23467777777 3332 3467888887764322110 0112333444455555566666666664332
Q ss_pred chHHHHHhcCCcHhHHHHhcCc--cHHHHHHHHHHHhc-CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Q 004582 576 NIVYHILYLDCTSKLVRLLEDP--ILSSYCIKIIKALC-TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLC 652 (744)
Q Consensus 576 ~n~~~iv~aG~v~~Lv~lL~~~--~l~~~al~~L~nLa-~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc 652 (744)
...+++.|+.+|.++ .++..|+.+|+.+. .. ..+++.|+.+|.+.++.++..|+..|..+-
T Consensus 157 -------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~---------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 157 -------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN---------PDIREAFVAMLQDKNEEIRIEAIIGLALRK 220 (280)
T ss_pred -------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC---------HHHHHHHHHHhcCCChHHHHHHHHHHHccC
Confidence 112445555555432 34555555555543 10 122344444444444555554444443221
Q ss_pred cC------------CH---HHHHHHHhC---CcHHHHHHHhh-cCCHHHHHHHHHHHH
Q 004582 653 HE------------HT---KYCQLANTE---SIIQCVVDISV-NGNSRGKETAKELIM 691 (744)
Q Consensus 653 ~~------------~~---~~~~~v~~~---G~i~~Lv~Ll~-~~s~~~r~~A~~lL~ 691 (744)
.. +. .....+.+- -++|.|..++. +.+.+++.+|.+.|.
T Consensus 221 ~~~av~~Li~~L~~~~~~~~a~~ALg~ig~~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 221 DKRVLSVLIKELKKGTVGDLIIEAAGELGDKTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred ChhHHHHHHHHHcCCchHHHHHHHHHhcCCHhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 00 00 001111111 25788888886 778888888877764
No 40
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.53 E-value=3.9e-08 Score=73.19 Aligned_cols=36 Identities=28% Similarity=0.587 Sum_probs=23.3
Q ss_pred cccccccCCC----ceecCCCccccHHHHHHHHccC---CCCCC
Q 004582 267 CSISLRLMYD----PVVIASGKTFERVWIQKWFNAG---HTTCP 303 (744)
Q Consensus 267 CPI~~~~m~d----PV~~~~G~ty~r~~I~~w~~~~---~~~cP 303 (744)
||||.+ |.+ |++++||||||+.||++|+..+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 9999999999999999999854 34576
No 41
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.46 E-value=1.3e-07 Score=70.06 Aligned_cols=39 Identities=36% Similarity=0.853 Sum_probs=36.4
Q ss_pred cccccccCCCce-ecCCCccccHHHHHHHHc-cCCCCCCCC
Q 004582 267 CSISLRLMYDPV-VIASGKTFERVWIQKWFN-AGHTTCPKT 305 (744)
Q Consensus 267 CPI~~~~m~dPV-~~~~G~ty~r~~I~~w~~-~~~~~cP~t 305 (744)
||||++.+.+|+ +++|||+|++.||.+|++ .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 899999999999999998 667789986
No 42
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.33 E-value=2.3e-07 Score=96.00 Aligned_cols=68 Identities=16% Similarity=0.421 Sum_probs=62.0
Q ss_pred CCCccccccccccCCCceecCCCccccHHHHHHHHccCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q 004582 261 PPEEFKCSISLRLMYDPVVIASGKTFERVWIQKWFNAGHTTCPKTHMRLDNVSVTPNVAIKELISQWCL 329 (744)
Q Consensus 261 ~p~~f~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~ 329 (744)
+..-++|-||.+.|+-||+++||||||.-||.+++.. ++.||.|..+.....|.-|..|-.+|+.+--
T Consensus 20 lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~ 87 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSLNF 87 (442)
T ss_pred hHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHHHH
Confidence 3345899999999999999999999999999999985 7899999999999999999999999998843
No 43
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.30 E-value=4.4e-07 Score=70.38 Aligned_cols=47 Identities=19% Similarity=0.424 Sum_probs=41.1
Q ss_pred CccccccccccCCCceecCCCcc-ccHHHHHHHHccCCCCCCCCCCCCC
Q 004582 263 EEFKCSISLRLMYDPVVIASGKT-FERVWIQKWFNAGHTTCPKTHMRLD 310 (744)
Q Consensus 263 ~~f~CPI~~~~m~dPV~~~~G~t-y~r~~I~~w~~~~~~~cP~t~~~l~ 310 (744)
+++.|+||++-++++++.+|||. ||..|+.+|+. ...+||.|++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 46889999999999999999999 99999999998 5789999998764
No 44
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=3.7e-07 Score=91.05 Aligned_cols=58 Identities=28% Similarity=0.509 Sum_probs=51.8
Q ss_pred CCccccccccccCCCceecCCCccccHHHHHHHHcc--CCCCCCCCCCCCCCCCCcccHH
Q 004582 262 PEEFKCSISLRLMYDPVVIASGKTFERVWIQKWFNA--GHTTCPKTHMRLDNVSVTPNVA 319 (744)
Q Consensus 262 p~~f~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~~--~~~~cP~t~~~l~~~~l~pn~~ 319 (744)
-..|-|-||++.-+|||++.|||=||=.||.+|+.. +...||+|+..+....++|=|.
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 356999999999999999999999999999999973 4566899999999999999663
No 45
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.29 E-value=2.3e-07 Score=73.81 Aligned_cols=58 Identities=21% Similarity=0.426 Sum_probs=33.2
Q ss_pred ccccccccccCCCceec-CCCccccHHHHHHHHccCCCCCCCCCCCCCCCCCcccHHHHHHH
Q 004582 264 EFKCSISLRLMYDPVVI-ASGKTFERVWIQKWFNAGHTTCPKTHMRLDNVSVTPNVAIKELI 324 (744)
Q Consensus 264 ~f~CPI~~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i 324 (744)
-++|++|.++|++||.+ .|.|.||+.||...+.. .||+|+.|--..++.-|..|.++|
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence 36899999999999975 89999999999886643 499999988788999999998876
No 46
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.26 E-value=6.7e-07 Score=91.50 Aligned_cols=48 Identities=21% Similarity=0.476 Sum_probs=41.0
Q ss_pred CCccccccccccCCCc--------eecCCCccccHHHHHHHHccCCCCCCCCCCCCC
Q 004582 262 PEEFKCSISLRLMYDP--------VVIASGKTFERVWIQKWFNAGHTTCPKTHMRLD 310 (744)
Q Consensus 262 p~~f~CPI~~~~m~dP--------V~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~ 310 (744)
..+..||||++.+.+| |+.+|||+||+.||.+|+.. +.+||.|++++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 4567899999988774 66789999999999999974 679999998765
No 47
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.26 E-value=7.6e-05 Score=92.05 Aligned_cols=221 Identities=16% Similarity=0.150 Sum_probs=125.0
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCC
Q 004582 420 TDLTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDE 499 (744)
Q Consensus 420 ~~~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk 499 (744)
..+.++..|.+.++.+|+.|+..|..+.. .++++.|+..|++ .+..++..|+.+|..+.....
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D----~d~~VR~~Aa~aL~~l~~~~~-- 684 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGD----GAAAVRRAAAEGLRELVEVLP-- 684 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcC----CCHHHHHHHHHHHHHHHhccC--
Confidence 34567888899999999999998887642 3578889999977 788899999888877742111
Q ss_pred cccccccchHHHHHhhcchh---HHHHHHHHHHhccC-----------hhh--hHH----HHhcCCchhhhcccccCCHH
Q 004582 500 MPLFHKDEICTFALFLDSEI---MEEALEIIEVLSHQ-----------QNY--ASE----LVASGIIPSIIKFLDTGTRE 559 (744)
Q Consensus 500 ~~iv~~Gai~~Lv~lL~s~~---~e~A~~~L~~Ls~~-----------~~~--k~~----I~~~G~Ip~Lv~lL~s~~~~ 559 (744)
..+.|...|++.. ...|+.+|..+... ++. |.. ++..+..+.|...+.+.+.+
T Consensus 685 -------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~ 757 (897)
T PRK13800 685 -------PAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENRE 757 (897)
T ss_pred -------chHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHH
Confidence 1234555554432 23344444332210 000 111 11112234444455555555
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcCc--cHHHHHHHHHHHhc-CHHHHHHHHhhCCcHHHHHHHHcCC
Q 004582 560 SRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLEDP--ILSSYCIKIIKALC-TSEARAAVAESNPCIDSIAKLLETG 636 (744)
Q Consensus 560 ~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~--~l~~~al~~L~nLa-~~e~~~~i~~~~g~V~~Lv~lL~~~ 636 (744)
+|..++.+|..+.... .+.++.|..++.|+ .++..|+..|.++. .+ ..+..|+..|.+.
T Consensus 758 VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~----------~~~~~l~~aL~d~ 819 (897)
T PRK13800 758 VRIAVAKGLATLGAGG--------APAGDAVRALTGDPDPLVRAAALAALAELGCPP----------DDVAAATAALRAS 819 (897)
T ss_pred HHHHHHHHHHHhcccc--------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc----------hhHHHHHHHhcCC
Confidence 5555555555443321 12356677777553 45566666666654 21 1123455555556
Q ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 004582 637 TREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLL 693 (744)
Q Consensus 637 s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L 693 (744)
++.+|..|+.+|..+.. ...++.|+.++.+.+..+|..|+..|..+
T Consensus 820 d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 820 AWQVRQGAARALAGAAA-----------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred ChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 66666666666654421 12346777777777777777777777554
No 48
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.00014 Score=83.71 Aligned_cols=271 Identities=17% Similarity=0.219 Sum_probs=196.0
Q ss_pred CCcHHHHHhhcCC-CHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCC
Q 004582 419 GTDLTSLSKLASR-PWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSR 497 (744)
Q Consensus 419 ~~~~~ll~~L~s~-~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~ 497 (744)
+.++.+..++.+. -.+.|+.|+..|+.+++ ..|..++. -++++|+..|..+ ..|+++...++.+++++.++++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga-~Gmk~li~vL~~D--~~D~E~ik~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA-QGMKPLIQVLQRD--YMDPEIIKYALDTLLILTSHDD 95 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH-cccHHHHHHHhhc--cCCHHHHHHHHHHHHHHHhcCc
Confidence 3566777777654 46889999999999987 35666665 4589999999874 4799999999999999988663
Q ss_pred ------CCc-----------cc-ccccchHHHHHhhcc---hhHHHHHHHHHHhccCh--hhhHHHH-hcCCchhhhccc
Q 004582 498 ------DEM-----------PL-FHKDEICTFALFLDS---EIMEEALEIIEVLSHQQ--NYASELV-ASGIIPSIIKFL 553 (744)
Q Consensus 498 ------nk~-----------~i-v~~Gai~~Lv~lL~s---~~~e~A~~~L~~Ls~~~--~~k~~I~-~~G~Ip~Lv~lL 553 (744)
+-. .+ -..+-|..|+..++. ++.-.|...+.+|-.+. +.+..+. -.-+|..|+.+|
T Consensus 96 ~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 96 SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 211 11 134667777777654 34456666665554442 4455555 477999999999
Q ss_pred ccCCHHHHHHHHHHHHHhcCCcchHHHHHh-cCCcHhHHHHhcC-----c-cHHHHHHHHHHHhc--CHHHHHHHHhhCC
Q 004582 554 DTGTRESRELAIKILCNLSSGDNIVYHILY-LDCTSKLVRLLED-----P-ILSSYCIKIIKALC--TSEARAAVAESNP 624 (744)
Q Consensus 554 ~s~~~~~k~~A~~aL~nLs~~~~n~~~iv~-aG~v~~Lv~lL~~-----~-~l~~~al~~L~nLa--~~e~~~~i~~~~g 624 (744)
+.....+|-.|+-.|..|+.+..+...+|. .+++..|..++.. + -+++.|+..|-||- +..|..-+.+ .+
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE-~~ 254 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFRE-GS 254 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhc-cc
Confidence 988888999999999999999888888865 6999999999953 2 46899999999999 7788888888 69
Q ss_pred cHHHHHHHHcC---CCH-------H---HHHHHHHHHHHHhcCCH------HHHHHHHhCCcHHHHHHHhhcC--CHHHH
Q 004582 625 CIDSIAKLLET---GTR-------E---EQEHIVDVLLSLCHEHT------KYCQLANTESIIQCVVDISVNG--NSRGK 683 (744)
Q Consensus 625 ~V~~Lv~lL~~---~s~-------~---~~e~A~~~L~~Lc~~~~------~~~~~v~~~G~i~~Lv~Ll~~~--s~~~r 683 (744)
.||.|.++|.. ++. . .-..++.++..+...+. .+.+++...+++..|..++.+. ..+++
T Consensus 255 ~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIl 334 (970)
T KOG0946|consen 255 YIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADIL 334 (970)
T ss_pred cHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHH
Confidence 99999999963 331 1 12244444444443211 2345778888999999987655 34677
Q ss_pred HHHHHHHHHhhhc
Q 004582 684 ETAKELIMLLDHC 696 (744)
Q Consensus 684 ~~A~~lL~~L~~~ 696 (744)
..+...+...-+.
T Consensus 335 tesiitvAevVRg 347 (970)
T KOG0946|consen 335 TESIITVAEVVRG 347 (970)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666555443
No 49
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.4e-06 Score=103.06 Aligned_cols=73 Identities=30% Similarity=0.410 Sum_probs=67.3
Q ss_pred CCCCCCccccccccccCCCceecC-CCccccHHHHHHHHccCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 004582 258 VLEPPEEFKCSISLRLMYDPVVIA-SGKTFERVWIQKWFNAGHTTCPKTHMRLDNVSVTPNVAIKELISQWCLKH 331 (744)
Q Consensus 258 ~~~~p~~f~CPI~~~~m~dPV~~~-~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~ 331 (744)
-..+|++|..||+..+|+|||++| +|+|-||+.|++++-. ..|.|.|+++|....++||..||..|+.|....
T Consensus 864 l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 864 LGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEK 937 (943)
T ss_pred hccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence 356999999999999999999998 9999999999999875 568999999999999999999999999996653
No 50
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=9.8e-07 Score=94.30 Aligned_cols=69 Identities=25% Similarity=0.507 Sum_probs=60.2
Q ss_pred CCCccccccccccCCCceecCCCccccHHHHHHHHccCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 004582 261 PPEEFKCSISLRLMYDPVVIASGKTFERVWIQKWFNAGHTTCPKTHMRLDNVSVTPNVAIKELISQWCLKHG 332 (744)
Q Consensus 261 ~p~~f~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~ 332 (744)
..+++.||||++.|++|++++|||+||+.||..|+. +...||.|+. ....+.||..+.+++......+.
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~--~~~~~~~n~~l~~~~~~~~~~~~ 78 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP--PSRNLRPNVLLANLVERLRQLRL 78 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC--chhccCccHHHHHHHHHHHhcCC
Confidence 347799999999999999999999999999999998 6678999985 22378899999999998887664
No 51
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.16 E-value=9.8e-05 Score=91.08 Aligned_cols=221 Identities=11% Similarity=0.093 Sum_probs=140.6
Q ss_pred cHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCC---
Q 004582 421 DLTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSR--- 497 (744)
Q Consensus 421 ~~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~--- 497 (744)
++.++..|.+.++.+|..|+..|..+...-+ ..+.|...|.+ .|+.++..|+.+|..+...+.
T Consensus 654 ~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----------~~~~L~~~L~~----~d~~VR~~A~~aL~~~~~~~~~~l 719 (897)
T PRK13800 654 GPALVAALGDGAAAVRRAAAEGLRELVEVLP----------PAPALRDHLGS----PDPVVRAAALDVLRALRAGDAALF 719 (897)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----------chHHHHHHhcC----CCHHHHHHHHHHHHhhccCCHHHH
Confidence 4567788888899999999999887743211 12344445544 455555555555544321000
Q ss_pred -------C---Ccc----cccccchHHHHHhhcch---hHHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHH
Q 004582 498 -------D---EMP----LFHKDEICTFALFLDSE---IMEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRES 560 (744)
Q Consensus 498 -------n---k~~----iv~~Gai~~Lv~lL~s~---~~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~ 560 (744)
+ |.. +...+..+.|..+|..+ +...++.+|..+... +.+.++.|..++++.+..+
T Consensus 720 ~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~V 791 (897)
T PRK13800 720 AAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLV 791 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHH
Confidence 0 000 00001122333333322 123344444333220 1234788999999999999
Q ss_pred HHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcCc--cHHHHHHHHHHHhcCHHHHHHHHhhCCcHHHHHHHHcCCCH
Q 004582 561 RELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLEDP--ILSSYCIKIIKALCTSEARAAVAESNPCIDSIAKLLETGTR 638 (744)
Q Consensus 561 k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~--~l~~~al~~L~nLa~~e~~~~i~~~~g~V~~Lv~lL~~~s~ 638 (744)
|..|+.+|.++...+. +++.|+..|.|+ .++..|+.+|..+.. ...++.|+.+|.+.++
T Consensus 792 R~aA~~aLg~~g~~~~---------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~ 852 (897)
T PRK13800 792 RAAALAALAELGCPPD---------DVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHL 852 (897)
T ss_pred HHHHHHHHHhcCCcch---------hHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCH
Confidence 9999999988854321 235577888665 478889999987751 3457999999999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 004582 639 EEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIML 692 (744)
Q Consensus 639 ~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~ 692 (744)
.+|..|+.+|..+- .++ ...+.|...+.+.+..+|+.|..+|..
T Consensus 853 ~VR~~A~~aL~~~~-~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 853 DVRKAAVLALTRWP-GDP---------AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHHHhccC-CCH---------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 99999999998861 222 246788899999999999999999863
No 52
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.16 E-value=1.8e-06 Score=64.43 Aligned_cols=44 Identities=36% Similarity=0.804 Sum_probs=39.5
Q ss_pred ccccccccCCCceecC-CCccccHHHHHHHHccCCCCCCCCCCCC
Q 004582 266 KCSISLRLMYDPVVIA-SGKTFERVWIQKWFNAGHTTCPKTHMRL 309 (744)
Q Consensus 266 ~CPI~~~~m~dPV~~~-~G~ty~r~~I~~w~~~~~~~cP~t~~~l 309 (744)
.||||.+.+.+|+.+. |||+|+..|+..|+..+...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999999999887 9999999999999988788899998753
No 53
>PRK09687 putative lyase; Provisional
Probab=98.15 E-value=3.3e-05 Score=82.17 Aligned_cols=191 Identities=13% Similarity=0.048 Sum_probs=138.6
Q ss_pred CChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcccccccchHHHHHhhcchh---HHHHHHHHHHhccChhhh
Q 004582 461 SYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPLFHKDEICTFALFLDSEI---MEEALEIIEVLSHQQNYA 537 (744)
Q Consensus 461 G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~iv~~Gai~~Lv~lL~s~~---~e~A~~~L~~Ls~~~~~k 537 (744)
-.++.|+.+|.+ .|..++..|+.+|..+- ...+++.+..++.++. ...|+.+|..|-.....
T Consensus 23 ~~~~~L~~~L~d----~d~~vR~~A~~aL~~~~----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~- 87 (280)
T PRK09687 23 LNDDELFRLLDD----HNSLKRISSIRVLQLRG----------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC- 87 (280)
T ss_pred ccHHHHHHHHhC----CCHHHHHHHHHHHHhcC----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-
Confidence 357889999988 78999999999988763 3557788888887654 35788888876542221
Q ss_pred HHHHhcCCchhhhcc-cccCCHHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcC--ccHHHHHHHHHHHhcCHH
Q 004582 538 SELVASGIIPSIIKF-LDTGTRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLED--PILSSYCIKIIKALCTSE 614 (744)
Q Consensus 538 ~~I~~~G~Ip~Lv~l-L~s~~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~--~~l~~~al~~L~nLa~~e 614 (744)
...+++.|..+ +++.+..++..|+.+|.++.....+. ...+++.+...+.| +.++..++.+|..+.+
T Consensus 88 ----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-- 157 (280)
T PRK09687 88 ----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND-- 157 (280)
T ss_pred ----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--
Confidence 12357778877 67788899999999999986543211 11234556666654 4678888888876642
Q ss_pred HHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 004582 615 ARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLL 693 (744)
Q Consensus 615 ~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L 693 (744)
..+++.|+.+|.+.++.++..|+.+|..+...++ .+++.|+.++.+.+..+|..|+..|..+
T Consensus 158 --------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 --------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred --------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 2468999999999999999999999998843332 3567777777888888888887777544
No 54
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=5.8e-06 Score=92.06 Aligned_cols=75 Identities=28% Similarity=0.380 Sum_probs=67.2
Q ss_pred CCCCCCCCccccccccccCCCceecC-CCccccHHHHHHHHccCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 004582 256 SGVLEPPEEFKCSISLRLMYDPVVIA-SGKTFERVWIQKWFNAGHTTCPKTHMRLDNVSVTPNVAIKELISQWCLKH 331 (744)
Q Consensus 256 ~~~~~~p~~f~CPI~~~~m~dPV~~~-~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~ 331 (744)
.+...+|++|+.|++..+|+|||+++ +|.|.||+.|..++-. ..|.|..+.||.-.+++||-.||+.|-.|....
T Consensus 846 ED~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k 921 (929)
T COG5113 846 EDMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFYKCK 921 (929)
T ss_pred hhccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHHHHhcc
Confidence 34678999999999999999999995 7899999999999865 468999999999999999999999999986543
No 55
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=9.2e-05 Score=79.08 Aligned_cols=173 Identities=17% Similarity=0.245 Sum_probs=147.4
Q ss_pred HHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCCcHhHHHHhcC---
Q 004582 521 EEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSG-DNIVYHILYLDCTSKLVRLLED--- 596 (744)
Q Consensus 521 e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~-~~n~~~iv~aG~v~~Lv~lL~~--- 596 (744)
+.|+.-|..+..+-+|...+...|+..+++..|.+.+.++|+.|+++|..++.+ +.....+++.|+.+.|+.+|..
T Consensus 101 e~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~ 180 (342)
T KOG2160|consen 101 EDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDP 180 (342)
T ss_pred HHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCC
Confidence 557777777787788888999999999999999999999999999999998876 6677788999999999999953
Q ss_pred ccHHHHHHHHHHHhc--CHHHHHHHHhhCCcHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHH
Q 004582 597 PILSSYCIKIIKALC--TSEARAAVAESNPCIDSIAKLLET--GTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVV 672 (744)
Q Consensus 597 ~~l~~~al~~L~nLa--~~e~~~~i~~~~g~V~~Lv~lL~~--~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv 672 (744)
...+.+|+-++..|- ++.+...+... ++...|..+|.+ .+...+..++..+..|..........+...|....++
T Consensus 181 ~~~r~kaL~AissLIRn~~~g~~~fl~~-~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~ 259 (342)
T KOG2160|consen 181 NTVRTKALFAISSLIRNNKPGQDEFLKL-NGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLE 259 (342)
T ss_pred chHHHHHHHHHHHHHhcCcHHHHHHHhc-CCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHH
Confidence 246689999999999 78899999885 558999999987 6888999999999999887777777888888888999
Q ss_pred HHhhcCCHHHHHHHHHHH-HHhh
Q 004582 673 DISVNGNSRGKETAKELI-MLLD 694 (744)
Q Consensus 673 ~Ll~~~s~~~r~~A~~lL-~~L~ 694 (744)
.+.......+++.|...+ ..+.
T Consensus 260 ~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 260 NLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHhhccchhhhHHHHHHHHHHHH
Confidence 999999999999887754 4443
No 56
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.07 E-value=1.6e-06 Score=65.26 Aligned_cols=40 Identities=28% Similarity=0.687 Sum_probs=33.9
Q ss_pred ccccccccC---CCceecCCCccccHHHHHHHHccCCCCCCCCC
Q 004582 266 KCSISLRLM---YDPVVIASGKTFERVWIQKWFNAGHTTCPKTH 306 (744)
Q Consensus 266 ~CPI~~~~m---~dPV~~~~G~ty~r~~I~~w~~~~~~~cP~t~ 306 (744)
.||||++-| ..++.++|||+|.+.||.+|++. +.+||.|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 499999999 36777899999999999999987 56999984
No 57
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=6.2e-05 Score=86.92 Aligned_cols=203 Identities=18% Similarity=0.176 Sum_probs=151.5
Q ss_pred HHHHHHhcccccCCCHHHHHHHHHHHHHHhc--CCCCCcccccccchHHHHHhhcch----hHHHHHHHHHHhccC-hhh
Q 004582 464 KPLIKFLKDAHNLCDAKAQKDGAEVLLAILS--QSRDEMPLFHKDEICTFALFLDSE----IMEEALEIIEVLSHQ-QNY 536 (744)
Q Consensus 464 ~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~--~~~nk~~iv~~Gai~~Lv~lL~s~----~~e~A~~~L~~Ls~~-~~~ 536 (744)
..|+.=|.. ..|+..|..|+.=|+.+.. +.+.-..+.-.-.||.|+.+|+.+ .+-.|+.+|.+|+.. +..
T Consensus 170 kkLL~gL~~---~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 170 KKLLQGLQA---ESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHhccc---cCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 334444444 2588888888888887744 333333333456899999999765 346899999888865 455
Q ss_pred hHHHHhcCCchhhhccccc-CCHHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHh--cCccHHHHHHHHHHHhc--
Q 004582 537 ASELVASGIIPSIIKFLDT-GTRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLL--EDPILSSYCIKIIKALC-- 611 (744)
Q Consensus 537 k~~I~~~G~Ip~Lv~lL~s-~~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL--~~~~l~~~al~~L~nLa-- 611 (744)
...+++.++||.|+.-|.. .-.++-+.++.||-.||..+. ..+.++|++...+..| .+-.+++.|+++-+|+|
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cks 324 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKS 324 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6667789999999886654 556899999999999998776 6788999999999998 35678999999999999
Q ss_pred -CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc---CCHHHHHHHHhCCcHHHHHHH
Q 004582 612 -TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCH---EHTKYCQLANTESIIQCVVDI 674 (744)
Q Consensus 612 -~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~---~~~~~~~~v~~~G~i~~Lv~L 674 (744)
.++.-..++++ +|.|-.+|...+....|.++.++..++. ++++..+.+...|.|.-...|
T Consensus 325 i~sd~f~~v~ea---lPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qL 388 (1051)
T KOG0168|consen 325 IRSDEFHFVMEA---LPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQL 388 (1051)
T ss_pred CCCccchHHHHH---HHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHH
Confidence 56777777774 9999999999999999999988888873 344444445455544443333
No 58
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.05 E-value=3.8e-06 Score=60.46 Aligned_cols=39 Identities=46% Similarity=0.949 Sum_probs=36.3
Q ss_pred cccccccCCCceecCCCccccHHHHHHHHccCCCCCCCC
Q 004582 267 CSISLRLMYDPVVIASGKTFERVWIQKWFNAGHTTCPKT 305 (744)
Q Consensus 267 CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~cP~t 305 (744)
||||++..++|++++|||.|+..|+..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998677789976
No 59
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.04 E-value=3.3e-06 Score=85.89 Aligned_cols=68 Identities=15% Similarity=0.225 Sum_probs=61.1
Q ss_pred CCCccccccccccCCCceecCCCccccHHHHHHHHccCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q 004582 261 PPEEFKCSISLRLMYDPVVIASGKTFERVWIQKWFNAGHTTCPKTHMRLDNVSVTPNVAIKELISQWCL 329 (744)
Q Consensus 261 ~p~~f~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~ 329 (744)
+..-++|-||.+-++-|++++||||||.-||.+++.. ++.||.|+.+.+..-+.-+..++..++.+..
T Consensus 22 LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 22 LDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESHAR 89 (391)
T ss_pred chhHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhhhh
Confidence 3456899999999999999999999999999999975 7899999999988888999888888888754
No 60
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=0.00011 Score=78.38 Aligned_cols=141 Identities=17% Similarity=0.134 Sum_probs=124.7
Q ss_pred ccCCHHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcC--ccHHHHHHHHHHHhc--CHHHHHHHHhhCCcHHHH
Q 004582 554 DTGTRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLED--PILSSYCIKIIKALC--TSEARAAVAESNPCIDSI 629 (744)
Q Consensus 554 ~s~~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~--~~l~~~al~~L~nLa--~~e~~~~i~~~~g~V~~L 629 (744)
.+.+.+-++.|+.-|..+..+-+|...++..|+..+|+..+.+ ..+++.|+++|+..+ +|.....+++ .|+...|
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E-~~~L~~L 171 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIE-LGALSKL 171 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH-cccHHHH
Confidence 3456789999999999999999999999999999999998865 478999999999999 8999999999 5899999
Q ss_pred HHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhc--CCHHHHHHHHHHHHHhhh
Q 004582 630 AKLLET-GTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVN--GNSRGKETAKELIMLLDH 695 (744)
Q Consensus 630 v~lL~~-~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~--~s~~~r~~A~~lL~~L~~ 695 (744)
+.++.+ ++..++.+|+.++.+|-++...........++...|...+++ .+.+.+++|..++..+..
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 999975 456677999999999999988877888888889999999998 677899999999988864
No 61
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=3.8e-06 Score=80.32 Aligned_cols=51 Identities=22% Similarity=0.473 Sum_probs=43.8
Q ss_pred cccccccccCCC--ceecCCCccccHHHHHHHHccCCCCCCCCCCCCCCCCCcc
Q 004582 265 FKCSISLRLMYD--PVVIASGKTFERVWIQKWFNAGHTTCPKTHMRLDNVSVTP 316 (744)
Q Consensus 265 f~CPI~~~~m~d--PV~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~~~l~p 316 (744)
|.||||++-++. ||-+.|||.||+.||+..++.+ ..||.|+..+.++++.+
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~-~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNT-NKCPTCRKKITHKQFHR 184 (187)
T ss_pred cCCCceecchhhccccccccchhHHHHHHHHHHHhC-CCCCCcccccchhhhee
Confidence 999999998876 4557899999999999999874 58999999888776654
No 62
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.92 E-value=5.2e-05 Score=69.91 Aligned_cols=143 Identities=13% Similarity=0.122 Sum_probs=110.9
Q ss_pred cccchHHHHHhhc----chhHHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCCcchHH
Q 004582 504 HKDEICTFALFLD----SEIMEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIVY 579 (744)
Q Consensus 504 ~~Gai~~Lv~lL~----s~~~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~ 579 (744)
.-+++..||.-.. .+.++...+-|.|.+-++-|-..+.+..++...+.-|...+...++-+++.|+|+|.++.|+.
T Consensus 14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHH
Confidence 3456666665543 234577888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcHhHHHHhcCc--cHHHHHHHHHHHhc--CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHH
Q 004582 580 HILYLDCTSKLVRLLEDP--ILSSYCIKIIKALC--TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDV 647 (744)
Q Consensus 580 ~iv~aG~v~~Lv~lL~~~--~l~~~al~~L~nLa--~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~ 647 (744)
.|+++|++|..+..++++ ..+..|+..|..|+ ...-|..+.. ..+|..+.+.-.+.+.+.+.-|-..
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~-p~Vv~~v~r~~~s~s~~~rnLa~~f 164 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS-PAVVRTVQRWRESKSHDERNLASAF 164 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc-HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999999885 56788999999999 6677777776 2444443333323333333333333
No 63
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=8.3e-06 Score=83.80 Aligned_cols=57 Identities=23% Similarity=0.400 Sum_probs=48.8
Q ss_pred CCCCCCCccccccccccCCCceecCCCccccHHHHHHHHccCCCCCCCCCCCCCCCCC
Q 004582 257 GVLEPPEEFKCSISLRLMYDPVVIASGKTFERVWIQKWFNAGHTTCPKTHMRLDNVSV 314 (744)
Q Consensus 257 ~~~~~p~~f~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~~~l 314 (744)
.+..++..+.|-||++-+.||--++|||.||=+||..|..+ ...||.|++++.+..+
T Consensus 232 ~~~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 232 LSSIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKV 288 (293)
T ss_pred CccCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcce
Confidence 34455677999999999999999999999999999999976 3459999998876654
No 64
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.90 E-value=0.0012 Score=71.63 Aligned_cols=268 Identities=16% Similarity=0.089 Sum_probs=189.9
Q ss_pred cHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCC-ChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCC
Q 004582 421 DLTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNS-YVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDE 499 (744)
Q Consensus 421 ~~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G-~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk 499 (744)
.+.++..|...++-....+...|..++..+...-.. .+.. ....|-..+.+ +.+......|+.+|.-+...++.|
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~-~e~~~~~~~l~~~l~~---~~~~~~~~~~~rcLQ~ll~~~eyR 191 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMEL-SELDVYKGFLKEQLQS---STNNDYIQFAARCLQTLLRVDEYR 191 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccc-hHHHHHHHHHHHHHhc---cCCCchHHHHHHHHHHHhcCcchh
Confidence 456888888889888888888888888654422111 0101 11222233443 256777888999999999999999
Q ss_pred cccccccchHHHHHhhcch-----hHHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCH-HHHHHHHHHHHHhcC
Q 004582 500 MPLFHKDEICTFALFLDSE-----IMEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTR-ESRELAIKILCNLSS 573 (744)
Q Consensus 500 ~~iv~~Gai~~Lv~lL~s~-----~~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~-~~k~~A~~aL~nLs~ 573 (744)
..++.++++..++..|.+. .+-..+-+++.|+.++.....+...+.|+.|+++++.... .+-+-.+.++.|+..
T Consensus 192 ~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~ 271 (442)
T KOG2759|consen 192 YAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLD 271 (442)
T ss_pred heeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998432 2356888889999988888877678999999999987654 477888999999876
Q ss_pred Cc-------chHHHHHhcCCcHhHHHHhc-----CccHH-------HHHHHHHHHhc-CH--------------------
Q 004582 574 GD-------NIVYHILYLDCTSKLVRLLE-----DPILS-------SYCIKIIKALC-TS-------------------- 613 (744)
Q Consensus 574 ~~-------~n~~~iv~aG~v~~Lv~lL~-----~~~l~-------~~al~~L~nLa-~~-------------------- 613 (744)
-. +....|+..++. +-++.|. |+++. +.--.-...|+ -+
T Consensus 272 k~~~~~~~k~~~~~mv~~~v~-k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e 350 (442)
T KOG2759|consen 272 KGPDRETKKDIASQMVLCKVL-KTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSE 350 (442)
T ss_pred cCchhhHHHHHHHHHHhcCch-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCcccccc
Confidence 65 233445555554 4455552 33432 11111222233 11
Q ss_pred ----HHHHHHHhhC-CcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHH
Q 004582 614 ----EARAAVAESN-PCIDSIAKLLET-GTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAK 687 (744)
Q Consensus 614 ----e~~~~i~~~~-g~V~~Lv~lL~~-~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~ 687 (744)
+|...+-+.. ..+..|+++|.+ .+|....-|+.-+.......++....+.+-|+=..+.+++.+.++++|-.|.
T Consensus 351 ~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~AL 430 (442)
T KOG2759|consen 351 KFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHAL 430 (442)
T ss_pred chHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHH
Confidence 2333443311 367788999975 4588888888888888888888889999999999999999999999999999
Q ss_pred HHHHHh
Q 004582 688 ELIMLL 693 (744)
Q Consensus 688 ~lL~~L 693 (744)
.+++.|
T Consensus 431 lavQ~l 436 (442)
T KOG2759|consen 431 LAVQKL 436 (442)
T ss_pred HHHHHH
Confidence 988765
No 65
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.88 E-value=1.8e-05 Score=83.36 Aligned_cols=63 Identities=16% Similarity=0.348 Sum_probs=48.1
Q ss_pred Ccccccccccc-CCCc----eecCCCccccHHHHHHHHccCCCCCCCCCCCCCCCC----CcccHHHHHHHH
Q 004582 263 EEFKCSISLRL-MYDP----VVIASGKTFERVWIQKWFNAGHTTCPKTHMRLDNVS----VTPNVAIKELIS 325 (744)
Q Consensus 263 ~~f~CPI~~~~-m~dP----V~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~~~----l~pn~~l~~~i~ 325 (744)
++..||+|+.- ...| .+.+|||+||++||.+.|..|...||.|+.++.... +.++..+.+.|.
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~ 73 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEVD 73 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHHH
Confidence 45789999872 3344 233799999999999999888889999999987655 666666655554
No 66
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.83 E-value=0.0017 Score=72.47 Aligned_cols=214 Identities=13% Similarity=0.116 Sum_probs=152.9
Q ss_pred HHHhhc-CCCHHHHHHHHHHHHHHhhhcchhhHHHhh-----CCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCC
Q 004582 424 SLSKLA-SRPWGSQCDAVENIKKLLKDNGQSRHLAFL-----NSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSR 497 (744)
Q Consensus 424 ll~~L~-s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~-----~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~ 497 (744)
++..|. ....+.....+..+..+..+++..-..+.+ .....+++++|.. .|.-++..|+.+|..+.....
T Consensus 58 ~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~----~d~~i~~~a~~iLt~l~~~~~ 133 (429)
T cd00256 58 FVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNR----QDQFIVHMSFSILAKLACFGL 133 (429)
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcC----CchhHHHHHHHHHHHHHhcCc
Confidence 344443 335677778888888888776543333333 3567888889987 688999999999999976543
Q ss_pred CCccccc-ccchHHHHHhhcch----hHHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccC--CHHHHHHHHHHHHH
Q 004582 498 DEMPLFH-KDEICTFALFLDSE----IMEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTG--TRESRELAIKILCN 570 (744)
Q Consensus 498 nk~~iv~-~Gai~~Lv~lL~s~----~~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~--~~~~k~~A~~aL~n 570 (744)
.+..-.. .-.+..|...|.++ ...-|+.+|..|...+++|..+.+.++++.|+.+|+.. +.+.+-.++-++|-
T Consensus 134 ~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWl 213 (429)
T cd00256 134 AKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWL 213 (429)
T ss_pred cccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 3211110 01223344444432 24568889999999999999999988999999999864 45889999999999
Q ss_pred hcCCcchHHHHHhcCCcHhHHHHhcC---ccHHHHHHHHHHHhc-CH-------HHHHHHHhhCCcHHHHHHHHcC---C
Q 004582 571 LSSGDNIVYHILYLDCTSKLVRLLED---PILSSYCIKIIKALC-TS-------EARAAVAESNPCIDSIAKLLET---G 636 (744)
Q Consensus 571 Ls~~~~n~~~iv~aG~v~~Lv~lL~~---~~l~~~al~~L~nLa-~~-------e~~~~i~~~~g~V~~Lv~lL~~---~ 636 (744)
||..++....+.+.|.|+.|++++.. +.+++-++++|.||. .+ .....|++ .| ++.+++.|.. +
T Consensus 214 LSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~-~~-l~~~l~~L~~rk~~ 291 (429)
T cd00256 214 LTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQ-CK-VLKTLQSLEQRKYD 291 (429)
T ss_pred HhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHH-cC-hHHHHHHHhcCCCC
Confidence 99998877777788999999999965 578999999999999 43 12345566 46 5666666653 4
Q ss_pred CHHHHHH
Q 004582 637 TREEQEH 643 (744)
Q Consensus 637 s~~~~e~ 643 (744)
+++..+.
T Consensus 292 DedL~ed 298 (429)
T cd00256 292 DEDLTDD 298 (429)
T ss_pred cHHHHHH
Confidence 6665543
No 67
>PHA02926 zinc finger-like protein; Provisional
Probab=97.83 E-value=1.2e-05 Score=79.70 Aligned_cols=57 Identities=19% Similarity=0.440 Sum_probs=44.7
Q ss_pred CCCCCccccccccccCCC---------ceecCCCccccHHHHHHHHccC-----CCCCCCCCCCCCCCCCccc
Q 004582 259 LEPPEEFKCSISLRLMYD---------PVVIASGKTFERVWIQKWFNAG-----HTTCPKTHMRLDNVSVTPN 317 (744)
Q Consensus 259 ~~~p~~f~CPI~~~~m~d---------PV~~~~G~ty~r~~I~~w~~~~-----~~~cP~t~~~l~~~~l~pn 317 (744)
.....+..|+||++...+ +|+.+|||+||..||.+|.+.. ..+||.|++.+. .++|+
T Consensus 165 ~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~--~I~pS 235 (242)
T PHA02926 165 YRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR--NITMS 235 (242)
T ss_pred HhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee--eeccc
Confidence 345677899999998754 5778999999999999998742 356999999765 44554
No 68
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.81 E-value=0.00064 Score=78.81 Aligned_cols=242 Identities=17% Similarity=0.194 Sum_probs=135.8
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcccc
Q 004582 424 SLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPLF 503 (744)
Q Consensus 424 ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~iv 503 (744)
+...|.+.++..|.-|+..|.++.. ++ +.+ -.++.+.++|.+ .++.+++.|+.++..+.....+- +
T Consensus 84 l~kdl~~~n~~~~~lAL~~l~~i~~--~~----~~~-~l~~~v~~ll~~----~~~~VRk~A~~~l~~i~~~~p~~---~ 149 (526)
T PF01602_consen 84 LQKDLNSPNPYIRGLALRTLSNIRT--PE----MAE-PLIPDVIKLLSD----PSPYVRKKAALALLKIYRKDPDL---V 149 (526)
T ss_dssp HHHHHCSSSHHHHHHHHHHHHHH-S--HH----HHH-HHHHHHHHHHHS----SSHHHHHHHHHHHHHHHHHCHCC---H
T ss_pred HHHhhcCCCHHHHHHHHhhhhhhcc--cc----hhh-HHHHHHHHHhcC----CchHHHHHHHHHHHHHhccCHHH---H
Confidence 4456777788888888888877762 22 222 246677777777 67888888888888887653332 1
Q ss_pred cccchHHHHHhhcch---hHHHHHHHHHHh-ccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCCcchHH
Q 004582 504 HKDEICTFALFLDSE---IMEEALEIIEVL-SHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIVY 579 (744)
Q Consensus 504 ~~Gai~~Lv~lL~s~---~~e~A~~~L~~L-s~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~ 579 (744)
..+.++.+..+|.+. +...|+.++..+ ...+.+. .+ -...+..|.+++...++-.+...+..|..++.......
T Consensus 150 ~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~-~~-~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~ 227 (526)
T PF01602_consen 150 EDELIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK-SL-IPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDA 227 (526)
T ss_dssp HGGHHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT-TH-HHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHH
T ss_pred HHHHHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh-hh-HHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhh
Confidence 111577777777543 345666666666 1111111 11 12233444444456667777777777777665443222
Q ss_pred HHHhcCCcHhHHHHhcC--ccHHHHHHHHHHHhc-CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Q 004582 580 HILYLDCTSKLVRLLED--PILSSYCIKIIKALC-TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHT 656 (744)
Q Consensus 580 ~iv~aG~v~~Lv~lL~~--~~l~~~al~~L~nLa-~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~ 656 (744)
.- ...++.+..++.+ +.+.-.|+.++..+. .+. +.. .+++.|+.+|.+.++.++-.++..|..++....
T Consensus 228 ~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~----~~~--~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~ 299 (526)
T PF01602_consen 228 DK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE----LLQ--KAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP 299 (526)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH----HHH--HHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH
T ss_pred hH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH----HHH--hhHHHHHHHhhcccchhehhHHHHHHHhhcccc
Confidence 10 3455666666643 355666666776666 544 222 456667777776667777777777777765541
Q ss_pred HHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 004582 657 KYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLD 694 (744)
Q Consensus 657 ~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~ 694 (744)
. .+. .....+.-+..+.+..+|..|..+|..+.
T Consensus 300 ~---~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~ 332 (526)
T PF01602_consen 300 P---AVF--NQSLILFFLLYDDDPSIRKKALDLLYKLA 332 (526)
T ss_dssp H---HHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH-
T ss_pred h---hhh--hhhhhhheecCCCChhHHHHHHHHHhhcc
Confidence 1 111 21122222223555566666666665554
No 69
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.79 E-value=0.00043 Score=80.23 Aligned_cols=240 Identities=15% Similarity=0.154 Sum_probs=148.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcc
Q 004582 422 LTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMP 501 (744)
Q Consensus 422 ~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~ 501 (744)
+.+...|.+.++.+|++|+.++..+.+.+++. +... +++.+.++|.+ .|+.++.+|+.++..+-.+++.-.
T Consensus 117 ~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d----~~~~V~~~a~~~l~~i~~~~~~~~- 187 (526)
T PF01602_consen 117 PDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSD----KDPSVVSAALSLLSEIKCNDDSYK- 187 (526)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTH----SSHHHHHHHHHHHHHHHCTHHHHT-
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccC----CcchhHHHHHHHHHHHccCcchhh-
Confidence 34567778899999999999999999876652 2223 78999999987 789999999999999911111100
Q ss_pred cccccchHHHHHhh----cchh---HHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCC
Q 004582 502 LFHKDEICTFALFL----DSEI---MEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSG 574 (744)
Q Consensus 502 iv~~Gai~~Lv~lL----~s~~---~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~ 574 (744)
..++.++..| .... +..++.+|..++........- ...++.+..++++.+..+.-.|+.++..+...
T Consensus 188 ----~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~ 261 (526)
T PF01602_consen 188 ----SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS 261 (526)
T ss_dssp ----THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred ----hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcc
Confidence 3344444443 3322 244555555555433322200 34577777777777777888888888877765
Q ss_pred cchHHHHHhcCCcHhHHHHhcC--ccHHHHHHHHHHHhc-CHHHHHHHHhhCCcHHHHHHHHc-CCCHHHHHHHHHHHHH
Q 004582 575 DNIVYHILYLDCTSKLVRLLED--PILSSYCIKIIKALC-TSEARAAVAESNPCIDSIAKLLE-TGTREEQEHIVDVLLS 650 (744)
Q Consensus 575 ~~n~~~iv~aG~v~~Lv~lL~~--~~l~~~al~~L~nLa-~~e~~~~i~~~~g~V~~Lv~lL~-~~s~~~~e~A~~~L~~ 650 (744)
+. .-..++++|+.+|.+ ++++-.++..|..++ .. ...+.. ....+..+. +.++.++..++.+|..
T Consensus 262 ~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~~----~~~~~~~l~~~~d~~Ir~~~l~lL~~ 330 (526)
T PF01602_consen 262 PE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVFN----QSLILFFLLYDDDPSIRKKALDLLYK 330 (526)
T ss_dssp HH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHGT----HHHHHHHHHCSSSHHHHHHHHHHHHH
T ss_pred hH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhhh----hhhhhheecCCCChhHHHHHHHHHhh
Confidence 54 344667778888854 346777777888887 22 111111 222333444 6777888888888888
Q ss_pred HhcCCHHHHHHHHhCCcHHHHHHHh-hcCCHHHHHHHHHHHHHhh
Q 004582 651 LCHEHTKYCQLANTESIIQCVVDIS-VNGNSRGKETAKELIMLLD 694 (744)
Q Consensus 651 Lc~~~~~~~~~v~~~G~i~~Lv~Ll-~~~s~~~r~~A~~lL~~L~ 694 (744)
++.. .+... +++.|...+ ..++...++.+...+..+.
T Consensus 331 l~~~--~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la 368 (526)
T PF01602_consen 331 LANE--SNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLA 368 (526)
T ss_dssp H--H--HHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred cccc--cchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 7743 22222 456666666 3446667777666666554
No 70
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=4.3e-06 Score=87.76 Aligned_cols=68 Identities=22% Similarity=0.273 Sum_probs=56.6
Q ss_pred CCCCccccccccccCCCceec-CCCccccHHHHHHHHccCCCCCCCCCCCCC-CCCCcccHHHHHHHHHH
Q 004582 260 EPPEEFKCSISLRLMYDPVVI-ASGKTFERVWIQKWFNAGHTTCPKTHMRLD-NVSVTPNVAIKELISQW 327 (744)
Q Consensus 260 ~~p~~f~CPI~~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~-~~~l~pn~~l~~~i~~~ 327 (744)
.+-.+|.||||+.+.+--.++ .|+|.||+.||-+-++.|+.+||.|++.+. ...|.++...-.+|.+.
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i 108 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI 108 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence 345689999999999999988 799999999999999999999999999985 45677665555665443
No 71
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.74 E-value=0.00088 Score=76.16 Aligned_cols=140 Identities=17% Similarity=0.144 Sum_probs=108.0
Q ss_pred CCHHHHHHHHHHHHHhcCCcc-hHHHHHhcCCcHhHHHHhcCc--cHHHHHHHHHHHhc--CHHHHHHHHhhCCcHHHHH
Q 004582 556 GTRESRELAIKILCNLSSGDN-IVYHILYLDCTSKLVRLLEDP--ILSSYCIKIIKALC--TSEARAAVAESNPCIDSIA 630 (744)
Q Consensus 556 ~~~~~k~~A~~aL~nLs~~~~-n~~~iv~aG~v~~Lv~lL~~~--~l~~~al~~L~nLa--~~e~~~~i~~~~g~V~~Lv 630 (744)
.+.....+|+-.+.+++..-. -+...-...++.+|+++|.+| .+...++++|.||. -..-+..+++ .|+|+.|.
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~-~ngId~l~ 467 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLR-NNGIDILE 467 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHH-cCcHHHHH
Confidence 344566666666666653211 122234568899999999776 46788999999999 6778888898 58899999
Q ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCC-cHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 004582 631 KLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTES-IIQCVVDISVNGNSRGKETAKELIMLLDHC 696 (744)
Q Consensus 631 ~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G-~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~~~ 696 (744)
+++.+.++..+.+++++|.++.-++.+..+...-.. ....++.+..+....+++.+-.+|++|...
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999987765444433333 566788899999999999999999999854
No 72
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.74 E-value=0.0012 Score=75.10 Aligned_cols=268 Identities=15% Similarity=0.123 Sum_probs=175.1
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHH-hcC-CCCCc
Q 004582 423 TSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAI-LSQ-SRDEM 500 (744)
Q Consensus 423 ~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nL-s~~-~~nk~ 500 (744)
..+..|...+++...+|+...++++-.+++++..+.+.|++|.|..++.... .....+ ...++++|- ... .....
T Consensus 13 ~~l~~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~--~s~~~k-~~~~~llns~f~~eqd~v~ 89 (678)
T KOG1293|consen 13 DLLYRLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLED--GSTELK-NGFAVLLNSLFLGEQDKVD 89 (678)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccC--Cchhhh-hhHHHHHHhHHhhccchHH
Confidence 4666677788888899999999999999999999999999999999998732 233444 566666665 333 34556
Q ss_pred ccccccchHHHHHhhcchh----HHHHHHHHHHhc--------------------------------------------c
Q 004582 501 PLFHKDEICTFALFLDSEI----MEEALEIIEVLS--------------------------------------------H 532 (744)
Q Consensus 501 ~iv~~Gai~~Lv~lL~s~~----~e~A~~~L~~Ls--------------------------------------------~ 532 (744)
.+.+.+.++.|.++|++.. .+..++.+..+- .
T Consensus 90 svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~ 169 (678)
T KOG1293|consen 90 SVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSS 169 (678)
T ss_pred HHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccc
Confidence 6778889999999886543 122333332222 1
Q ss_pred ChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHH---HhcCCcch-HHHH----HhcCCcH--hHHHHhcCcc----
Q 004582 533 QQNYASELVASGIIPSIIKFLDTGTRESRELAIKILC---NLSSGDNI-VYHI----LYLDCTS--KLVRLLEDPI---- 598 (744)
Q Consensus 533 ~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~---nLs~~~~n-~~~i----v~aG~v~--~Lv~lL~~~~---- 598 (744)
..+++.....+|+...+.-++..-+...|..|+..+. ++..+++- ...+ ...|+.+ .+.+++.++.
T Consensus 170 ~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~ 249 (678)
T KOG1293|consen 170 TKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSER 249 (678)
T ss_pred cchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHH
Confidence 2222323334454444444444445556666666665 44444332 1111 2234444 2333333221
Q ss_pred --------------------------------------------------------------------------------
Q 004582 599 -------------------------------------------------------------------------------- 598 (744)
Q Consensus 599 -------------------------------------------------------------------------------- 598 (744)
T Consensus 250 l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~ 329 (678)
T KOG1293|consen 250 LRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKT 329 (678)
T ss_pred HHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhh
Confidence
Q ss_pred ---------------------------------------------------------------HHHHHHHHHHHhc--CH
Q 004582 599 ---------------------------------------------------------------LSSYCIKIIKALC--TS 613 (744)
Q Consensus 599 ---------------------------------------------------------------l~~~al~~L~nLa--~~ 613 (744)
....|+-++.+++ ..
T Consensus 330 ~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~ 409 (678)
T KOG1293|consen 330 TTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVS 409 (678)
T ss_pred HHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHH
Confidence 1223333333333 12
Q ss_pred HHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 004582 614 EARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLL 693 (744)
Q Consensus 614 e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L 693 (744)
.-+.. .++..++..||+++..++..++..++++|.++.-.-.......++.|+|..|.+++.+..+..|.++.+.|+++
T Consensus 410 aL~tg-~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l 488 (678)
T KOG1293|consen 410 ALRTG-LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHL 488 (678)
T ss_pred HHHcC-CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 22222 23356788999999999999999999999999877667778899999999999999999999999999999988
Q ss_pred h
Q 004582 694 D 694 (744)
Q Consensus 694 ~ 694 (744)
.
T Consensus 489 ~ 489 (678)
T KOG1293|consen 489 M 489 (678)
T ss_pred H
Confidence 6
No 73
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.63 E-value=4.9e-05 Score=56.19 Aligned_cols=40 Identities=28% Similarity=0.398 Sum_probs=37.7
Q ss_pred hhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcC
Q 004582 534 QNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSS 573 (744)
Q Consensus 534 ~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~ 573 (744)
++++..+++.|++|+|+++|++++.++++.|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999999999999999973
No 74
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.63 E-value=0.0077 Score=66.66 Aligned_cols=265 Identities=14% Similarity=0.090 Sum_probs=183.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCccc
Q 004582 423 TSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPL 502 (744)
Q Consensus 423 ~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~i 502 (744)
.+...+-+.+.++|..|...+|.+..+ ...-..+.+.+.--.+++.|..+. .+...+++|+..+..+.....+.. -
T Consensus 29 ~i~~~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~--~~~~ER~QALkliR~~l~~~~~~~-~ 104 (371)
T PF14664_consen 29 RIQCMLLSDSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDN--KNDVEREQALKLIRAFLEIKKGPK-E 104 (371)
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccC--CChHHHHHHHHHHHHHHHhcCCcc-c
Confidence 344455566699999999999988875 555666777777777778887632 567788999999999977643322 2
Q ss_pred ccccchHHHHHhhcchh---HHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCCcchHH
Q 004582 503 FHKDEICTFALFLDSEI---MEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIVY 579 (744)
Q Consensus 503 v~~Gai~~Lv~lL~s~~---~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~ 579 (744)
+-.|.+..+|.+.+... ...|+++|..|+. .+-..+...||+..|++.+..+..+..+..+.++..+-..+..|.
T Consensus 105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l--~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~ 182 (371)
T PF14664_consen 105 IPRGVVRALVAIAEHEDDRLRRICLETLCELAL--LNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRK 182 (371)
T ss_pred CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHh--hCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhh
Confidence 36689999999986543 3678888888887 344556689999999999988888888899999999999998887
Q ss_pred HHHhcCCcHhHHHHhcCc-----------cHHHHHHHHHHHhc-CHHHHHHHHhhC-CcHHHHHHHHcCCCHHHHHHHHH
Q 004582 580 HILYLDCTSKLVRLLEDP-----------ILSSYCIKIIKALC-TSEARAAVAESN-PCIDSIAKLLETGTREEQEHIVD 646 (744)
Q Consensus 580 ~iv~aG~v~~Lv~lL~~~-----------~l~~~al~~L~nLa-~~e~~~~i~~~~-g~V~~Lv~lL~~~s~~~~e~A~~ 646 (744)
.+..---+..++.-+.+. +....+..++..+- +-.|--.+.... .++..||..|....+++|+..+.
T Consensus 183 yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ild 262 (371)
T PF14664_consen 183 YLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILD 262 (371)
T ss_pred hhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHH
Confidence 764433344444444322 12233333443333 444444443322 46788888888888888887777
Q ss_pred HHHHHhc-------------------CCH-----------------------------H----HHHHHHhCCcHHHHHHH
Q 004582 647 VLLSLCH-------------------EHT-----------------------------K----YCQLANTESIIQCVVDI 674 (744)
Q Consensus 647 ~L~~Lc~-------------------~~~-----------------------------~----~~~~v~~~G~i~~Lv~L 674 (744)
+|..+-. +.. . ......+.|.++.|+++
T Consensus 263 ll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~l 342 (371)
T PF14664_consen 263 LLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVEL 342 (371)
T ss_pred HHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 7766540 000 0 12244688999999999
Q ss_pred hhcC-CHHHHHHHHHHHHHh
Q 004582 675 SVNG-NSRGKETAKELIMLL 693 (744)
Q Consensus 675 l~~~-s~~~r~~A~~lL~~L 693 (744)
..+. ++...++|.-||.-+
T Consensus 343 i~~~~d~~l~~KAtlLL~el 362 (371)
T PF14664_consen 343 IESSEDSSLSRKATLLLGEL 362 (371)
T ss_pred HhcCCCchHHHHHHHHHHHH
Confidence 9988 788899999988643
No 75
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.63 E-value=0.00031 Score=64.93 Aligned_cols=145 Identities=15% Similarity=0.135 Sum_probs=116.0
Q ss_pred chhhhcccc-cCCHHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcC--ccHHHHHHHHHHHhc-CHHHHHHHHh
Q 004582 546 IPSIIKFLD-TGTRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLED--PILSSYCIKIIKALC-TSEARAAVAE 621 (744)
Q Consensus 546 Ip~Lv~lL~-s~~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~--~~l~~~al~~L~nLa-~~e~~~~i~~ 621 (744)
+..||.=.. ..+.+.|+....-|.|.+-++-|-..+.+..++...++-|.. ..+++.+++.|+||| .+.+...|.+
T Consensus 18 lq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~e 97 (173)
T KOG4646|consen 18 LQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIRE 97 (173)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHH
Confidence 344444333 357789999999999999999999999999999999999965 468999999999999 9999999999
Q ss_pred hCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHH
Q 004582 622 SNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIM 691 (744)
Q Consensus 622 ~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~ 691 (744)
++++|.++..+++........|+..|..||-.+...+..+....++..+.+...+.+.+-+--|...|.
T Consensus 98 -a~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~ 166 (173)
T KOG4646|consen 98 -ALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLD 166 (173)
T ss_pred -hcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 588999999998888888899999999999887777677766666666555554555555555555443
No 76
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.60 E-value=5.4e-05 Score=56.99 Aligned_cols=41 Identities=20% Similarity=0.407 Sum_probs=35.3
Q ss_pred ccccccccC---CCceecCCCccccHHHHHHHHccCCCCCCCCCC
Q 004582 266 KCSISLRLM---YDPVVIASGKTFERVWIQKWFNAGHTTCPKTHM 307 (744)
Q Consensus 266 ~CPI~~~~m---~dPV~~~~G~ty~r~~I~~w~~~~~~~cP~t~~ 307 (744)
.||+|.+.+ ..|++++|||+||..|+.++. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 388998888 468899999999999999998 45678999974
No 77
>PF05536 Neurochondrin: Neurochondrin
Probab=97.58 E-value=0.00061 Score=79.00 Aligned_cols=183 Identities=14% Similarity=0.164 Sum_probs=124.3
Q ss_pred chHHHHHhhcchhHHH---HHHHHHHhccChh----hhHHHHhcCCchhhhcccccC-------CHHHHHHHHHHHHHhc
Q 004582 507 EICTFALFLDSEIMEE---ALEIIEVLSHQQN----YASELVASGIIPSIIKFLDTG-------TRESRELAIKILCNLS 572 (744)
Q Consensus 507 ai~~Lv~lL~s~~~e~---A~~~L~~Ls~~~~----~k~~I~~~G~Ip~Lv~lL~s~-------~~~~k~~A~~aL~nLs 572 (744)
.+..-+.+|+....+. ++..+-.+....+ .+..|.++=+...|-++|+++ ....+..|+.+|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 3455566776554332 3444444544433 244576766678889999883 3468899999999999
Q ss_pred CCcchHHHHHhcCCcHhHHHHhcC--c-cHHHHHHHHHHHhc-CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHH
Q 004582 573 SGDNIVYHILYLDCTSKLVRLLED--P-ILSSYCIKIIKALC-TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVL 648 (744)
Q Consensus 573 ~~~~n~~~iv~aG~v~~Lv~lL~~--~-~l~~~al~~L~nLa-~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L 648 (744)
..++....=--.+-||.|++.+.. + .+...|+.+|..++ +++|+.++++ .|+|+.|++++.+ .+..++.|+.+|
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~-~g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLE-SGAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHh-cCCHHHHHHHHHh-CcchHHHHHHHH
Confidence 977643222224789999999943 4 68999999999999 9999999999 6999999999987 677899999999
Q ss_pred HHHhcCCHHHHHHHHhC---CcHHHHHHHhhcCCHHHHHHHHHHHH
Q 004582 649 LSLCHEHTKYCQLANTE---SIIQCVVDISVNGNSRGKETAKELIM 691 (744)
Q Consensus 649 ~~Lc~~~~~~~~~v~~~---G~i~~Lv~Ll~~~s~~~r~~A~~lL~ 691 (744)
.++++......-.-... .+++.|-..........+-.+..+|.
T Consensus 164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~ 209 (543)
T PF05536_consen 164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLS 209 (543)
T ss_pred HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 99987644211111111 23444444444444444444445443
No 78
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.56 E-value=4.8e-05 Score=84.57 Aligned_cols=67 Identities=21% Similarity=0.391 Sum_probs=57.6
Q ss_pred CCCccccccccccCCCceec-CCCccccHHHHHHHHccCCCCCCCCCCCCCCCCCcc-cHHHHHHHHHHH
Q 004582 261 PPEEFKCSISLRLMYDPVVI-ASGKTFERVWIQKWFNAGHTTCPKTHMRLDNVSVTP-NVAIKELISQWC 328 (744)
Q Consensus 261 ~p~~f~CPI~~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~~~l~p-n~~l~~~i~~~~ 328 (744)
+.+++.||+|..+++||+.. .|||.||+.||..|+.. +..||.|.+.+......| ...+++.+..|-
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKLP 86 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhcc
Confidence 56779999999999999995 99999999999999988 889999998887666665 456777777763
No 79
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.52 E-value=0.00022 Score=52.64 Aligned_cols=41 Identities=27% Similarity=0.295 Sum_probs=38.2
Q ss_pred CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Q 004582 612 TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCH 653 (744)
Q Consensus 612 ~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~ 653 (744)
+++++..+++ .|+|+.|+++|.++++.++++|+++|.+||.
T Consensus 1 ~~~~~~~i~~-~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVE-AGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHH-TTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHH-cccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 4789999999 6999999999999999999999999999974
No 80
>PTZ00429 beta-adaptin; Provisional
Probab=97.48 E-value=0.011 Score=70.94 Aligned_cols=235 Identities=14% Similarity=0.152 Sum_probs=134.7
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcccc
Q 004582 424 SLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPLF 503 (744)
Q Consensus 424 ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~iv 503 (744)
+...|.+.++-+|..|+.++.++-..+++ .+...|+++.|.++|.+ .|+.++.+|+.+|..+......+.. .
T Consensus 145 lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D----~dp~Vv~nAl~aL~eI~~~~~~~l~-l 216 (746)
T PTZ00429 145 LRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLND----NNPVVASNAAAIVCEVNDYGSEKIE-S 216 (746)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcC----CCccHHHHHHHHHHHHHHhCchhhH-H
Confidence 44556788999999999999999876553 34567899999999987 7999999999999999865544322 2
Q ss_pred cccchHHHHHhhcchhHHHHHHHHHHhccC-hhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCCcc--hHHH
Q 004582 504 HKDEICTFALFLDSEIMEEALEIIEVLSHQ-QNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSGDN--IVYH 580 (744)
Q Consensus 504 ~~Gai~~Lv~lL~s~~~e~A~~~L~~Ls~~-~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~--n~~~ 580 (744)
..+.+..|+..|..-..-.-+.+|..|+.. +..... ....+..+...|++.+..+.-.|++++++++...+ ....
T Consensus 217 ~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~ 294 (746)
T PTZ00429 217 SNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKES--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIER 294 (746)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHH
Confidence 334555565555432211122223223221 111111 12345566666777777777788888887765421 1111
Q ss_pred HHhcCCcHhHHHHhcC-cc------------------------------------HHHHHHHHHHHhcCHHHHHHHHhhC
Q 004582 581 ILYLDCTSKLVRLLED-PI------------------------------------LSSYCIKIIKALCTSEARAAVAESN 623 (744)
Q Consensus 581 iv~aG~v~~Lv~lL~~-~~------------------------------------l~~~al~~L~nLa~~e~~~~i~~~~ 623 (744)
+ -....++|+.++.. ++ ++...+.+|..|++++|...|+
T Consensus 295 ~-~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL--- 370 (746)
T PTZ00429 295 C-TVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEIL--- 370 (746)
T ss_pred H-HHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHH---
Confidence 1 01122344444321 22 3455555555555444443333
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCH
Q 004582 624 PCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNS 680 (744)
Q Consensus 624 g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~ 680 (744)
..|.+.+...+...+..++.++..++..-+.. ...++..|++++.++..
T Consensus 371 ---~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~-----a~~cV~~Ll~ll~~~~~ 419 (746)
T PTZ00429 371 ---KELAEYASGVDMVFVVEVVRAIASLAIKVDSV-----APDCANLLLQIVDRRPE 419 (746)
T ss_pred ---HHHHHHhhcCCHHHHHHHHHHHHHHHHhChHH-----HHHHHHHHHHHhcCCch
Confidence 33444455566777777777777776443221 12345556666654433
No 81
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=7.3e-05 Score=82.59 Aligned_cols=71 Identities=23% Similarity=0.352 Sum_probs=57.4
Q ss_pred CCccccccccccCCCceecCCCccccHHHHHHHHcc----CCCCCCCCCCCCCCCCCcccH----HHHHHHHHHHHHcC
Q 004582 262 PEEFKCSISLRLMYDPVVIASGKTFERVWIQKWFNA----GHTTCPKTHMRLDNVSVTPNV----AIKELISQWCLKHG 332 (744)
Q Consensus 262 p~~f~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~~----~~~~cP~t~~~l~~~~l~pn~----~l~~~i~~~~~~~~ 332 (744)
+.+..||||++-..=|+.+.|||.||=.||-.+|.. +...||.|+..+...+|.|-+ .-+..++..+..||
T Consensus 184 ~t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng 262 (513)
T KOG2164|consen 184 STDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNG 262 (513)
T ss_pred CcCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccC
Confidence 348899999999999999999999999999999864 467899999888776666643 23445666777777
No 82
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.011 Score=62.02 Aligned_cols=263 Identities=14% Similarity=0.187 Sum_probs=174.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHh-hCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCc
Q 004582 422 LTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAF-LNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEM 500 (744)
Q Consensus 422 ~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~-~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~ 500 (744)
.+++..|.+.++.+|..|+.-+-.++.. .-+.... +.-.++.+.+++.. .++ -+.|+++|.|++.+..-+.
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~----~~~--~~~a~~alVnlsq~~~l~~ 77 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKD----LDP--AEPAATALVNLSQKEELRK 77 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccC----ccc--ccHHHHHHHHHHhhHHHHH
Confidence 4678888999999999999888888765 2222222 34568888899876 233 6789999999999888777
Q ss_pred ccccccchHHHHHhhc---chhHHHHHHHHHHhccChhhhHHHHh--c----CCchhhh-cccccCCH--HHHHHHHHHH
Q 004582 501 PLFHKDEICTFALFLD---SEIMEEALEIIEVLSHQQNYASELVA--S----GIIPSII-KFLDTGTR--ESRELAIKIL 568 (744)
Q Consensus 501 ~iv~~Gai~~Lv~lL~---s~~~e~A~~~L~~Ls~~~~~k~~I~~--~----G~Ip~Lv-~lL~s~~~--~~k~~A~~aL 568 (744)
.++.. .+..++..+- ++..+..+..|.||+..+.....+.. . .++..++ ...+.+-. .--..-+-.+
T Consensus 78 ~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf 156 (353)
T KOG2973|consen 78 KLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVF 156 (353)
T ss_pred HHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHH
Confidence 76666 6666666653 33557888899999998877555542 1 2333343 33333222 2234556788
Q ss_pred HHhcCCcchHHHHHhcCCcHh--HHHHhcCcc-H-HHHHHHHHHHhc-CHHHHHHHHhhCC--cHHHH------------
Q 004582 569 CNLSSGDNIVYHILYLDCTSK--LVRLLEDPI-L-SSYCIKIIKALC-TSEARAAVAESNP--CIDSI------------ 629 (744)
Q Consensus 569 ~nLs~~~~n~~~iv~aG~v~~--Lv~lL~~~~-l-~~~al~~L~nLa-~~e~~~~i~~~~g--~V~~L------------ 629 (744)
.||+.....|..+.....+|. |+.+-..++ + +...+++|.|.| .......+++ .+ .+|.|
T Consensus 157 ~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~lLp~iLlPlagpee~sE 235 (353)
T KOG2973|consen 157 ANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLD-ESINLLPAILLPLAGPEELSE 235 (353)
T ss_pred HHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhc-chHHHHHHHHhhcCCccccCH
Confidence 899999888888866554333 222222122 2 245788888988 6555555544 12 12221
Q ss_pred ---------HHHHc-----CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcC-CHHHHHHHHHHHHHhh
Q 004582 630 ---------AKLLE-----TGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNG-NSRGKETAKELIMLLD 694 (744)
Q Consensus 630 ---------v~lL~-----~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~-s~~~r~~A~~lL~~L~ 694 (744)
+++|. ..+|.++..-+.+|+.||.... .+..+...|+.|.|-++=... ++++++..-.+.+.+.
T Consensus 236 Edm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~-GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv 314 (353)
T KOG2973|consen 236 EDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA-GREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLV 314 (353)
T ss_pred HHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH-hHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 23442 2578899999999999998764 457778888888888876654 5677887777887776
Q ss_pred h
Q 004582 695 H 695 (744)
Q Consensus 695 ~ 695 (744)
+
T Consensus 315 ~ 315 (353)
T KOG2973|consen 315 R 315 (353)
T ss_pred h
Confidence 5
No 83
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.0027 Score=66.47 Aligned_cols=202 Identities=17% Similarity=0.220 Sum_probs=140.2
Q ss_pred HHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcccc-cccchHHHHHhhcch-hHHHHHHHHHHhccChhhhHHHH
Q 004582 464 KPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPLF-HKDEICTFALFLDSE-IMEEALEIIEVLSHQQNYASELV 541 (744)
Q Consensus 464 ~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~iv-~~Gai~~Lv~lL~s~-~~e~A~~~L~~Ls~~~~~k~~I~ 541 (744)
..+|.+|.+ .++.++..|+..|+.++.. ..+.... +.-.++.+.+++... -.+.|+.+|.|++..+.-++.+.
T Consensus 6 ~elv~ll~~----~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 6 VELVELLHS----LSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDPAEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHhcc----CChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCcccccHHHHHHHHHHhhHHHHHHHH
Confidence 457889988 7899999999999999776 3332222 234677777887543 25789999999999999888888
Q ss_pred hcCCchhhhcccccCCHHHHHHHHHHHHHhcCCcchHHHHHh--c----CCcHhHHHHhcCcc-----HHHHHHHHHHHh
Q 004582 542 ASGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIVYHILY--L----DCTSKLVRLLEDPI-----LSSYCIKIIKAL 610 (744)
Q Consensus 542 ~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~iv~--a----G~v~~Lv~lL~~~~-----l~~~al~~L~nL 610 (744)
+. .+..++.++.+.....-...+.+|.||+..++....+.. . .++..++..+.+.+ -..+.+-++.||
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 76 777888888877667777888999999999886665532 1 45555555554432 246788899999
Q ss_pred c-CHHHHHHHHhhCCcHH-HHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCC--cHHHHH
Q 004582 611 C-TSEARAAVAESNPCID-SIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTES--IIQCVV 672 (744)
Q Consensus 611 a-~~e~~~~i~~~~g~V~-~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G--~i~~Lv 672 (744)
+ .+.||.-+....-+.. .|+.+-..++..-+...+++|.|.|-....+...+. .+ .+|.|+
T Consensus 160 s~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~lLp~iL 224 (353)
T KOG2973|consen 160 SQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLD-ESINLLPAIL 224 (353)
T ss_pred hhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhc-chHHHHHHHH
Confidence 9 9999998887432222 222222335555677889999998866654434433 44 445443
No 84
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.40 E-value=0.00016 Score=74.02 Aligned_cols=67 Identities=21% Similarity=0.324 Sum_probs=58.6
Q ss_pred cccccccccCCCceec-CCCccccHHHHHHHHccCCCCCCCCCCC-CCCCCCcccHHHHHHHHHHHHHc
Q 004582 265 FKCSISLRLMYDPVVI-ASGKTFERVWIQKWFNAGHTTCPKTHMR-LDNVSVTPNVAIKELISQWCLKH 331 (744)
Q Consensus 265 f~CPI~~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~cP~t~~~-l~~~~l~pn~~l~~~i~~~~~~~ 331 (744)
+.||+|+.|.++|+-+ +|||+||.+||+..+-.....||.|... +--..|+|++..+..|+.+.+++
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq 343 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQ 343 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHH
Confidence 8999999999999998 8999999999999987778899999653 34468999999999999987743
No 85
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00012 Score=80.48 Aligned_cols=73 Identities=26% Similarity=0.454 Sum_probs=60.6
Q ss_pred CCCCCCCccccccccccCCCceecCCCccccHHHHHHHHccCCCCCCCCCCCCCC-----CCCcccHHHHHHHHHHHHH
Q 004582 257 GVLEPPEEFKCSISLRLMYDPVVIASGKTFERVWIQKWFNAGHTTCPKTHMRLDN-----VSVTPNVAIKELISQWCLK 330 (744)
Q Consensus 257 ~~~~~p~~f~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~-----~~l~pn~~l~~~i~~~~~~ 330 (744)
....++.+|.|-||..++.+||+++|||+||+.||.+.++ ....||.|+.++.+ ....+|+.+..+|..|+..
T Consensus 77 ~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 77 GPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred cCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 3456689999999999999999999999999999999887 46789999988763 2344677788888888764
No 86
>PF05536 Neurochondrin: Neurochondrin
Probab=97.31 E-value=0.004 Score=72.37 Aligned_cols=230 Identities=13% Similarity=0.185 Sum_probs=151.5
Q ss_pred ChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCC----CCcccccccchHHHHHhhcchh----------HHHHHHHH
Q 004582 462 YVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSR----DEMPLFHKDEICTFALFLDSEI----------MEEALEII 527 (744)
Q Consensus 462 ~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~----nk~~iv~~Gai~~Lv~lL~s~~----------~e~A~~~L 527 (744)
.++..+++|+. .+..-+-.|+..+-+++.+++ ++..+.++=+++-|-++|.++. ...|+.+|
T Consensus 6 ~l~~c~~lL~~----~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL 81 (543)
T PF05536_consen 6 SLEKCLSLLKS----ADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVL 81 (543)
T ss_pred HHHHHHHHhcc----CCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 45667788887 554555677777777776544 2334567756788888887631 24689999
Q ss_pred HHhccChhhhHHHHhcCCchhhhcccccCCH-HHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcC-ccHHHHHHH
Q 004582 528 EVLSHQQNYASELVASGIIPSIIKFLDTGTR-ESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLED-PILSSYCIK 605 (744)
Q Consensus 528 ~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~-~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~-~~l~~~al~ 605 (744)
..++..++....--=.+-||.|++++.+.+. +....|+.+|..++..++.+..+++.|+|+.|++.+.+ +...+.|+.
T Consensus 82 ~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~~~~E~Al~ 161 (543)
T PF05536_consen 82 AAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQSFQMEIALN 161 (543)
T ss_pred HHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCcchHHHHHH
Confidence 9999977664332224679999999988887 99999999999999999999999999999999999866 467899999
Q ss_pred HHHHhc-CHHHHHHHHhhC----CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH-HHHHHhCC----cHHHHHHHh
Q 004582 606 IIKALC-TSEARAAVAESN----PCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKY-CQLANTES----IIQCVVDIS 675 (744)
Q Consensus 606 ~L~nLa-~~e~~~~i~~~~----g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~-~~~v~~~G----~i~~Lv~Ll 675 (744)
+|.++. ... ...+-+.. ..++.|-..........+-..+..|..+=...+.. ........ +..-|..++
T Consensus 162 lL~~Lls~~~-~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 162 LLLNLLSRLG-QKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHHhcc-hhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 999998 322 11111111 23344444444444444555666666664443211 11122222 344455566
Q ss_pred hcC-CHHHHHHHHHHHHHhhhc
Q 004582 676 VNG-NSRGKETAKELIMLLDHC 696 (744)
Q Consensus 676 ~~~-s~~~r~~A~~lL~~L~~~ 696 (744)
.+. ++..|..|..+...|-+.
T Consensus 241 ~sr~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 241 QSRLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred hcCCCHHHHHHHHHHHHHHHHH
Confidence 554 566666776666666543
No 87
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.30 E-value=0.00011 Score=79.17 Aligned_cols=52 Identities=27% Similarity=0.380 Sum_probs=47.4
Q ss_pred cccccccccCCCceec-CCCccccHHHHHHHHccCCCCCCCCCCCCCCCCCccc
Q 004582 265 FKCSISLRLMYDPVVI-ASGKTFERVWIQKWFNAGHTTCPKTHMRLDNVSVTPN 317 (744)
Q Consensus 265 f~CPI~~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~~~l~pn 317 (744)
+.|.|++++-++||+. -+||.|||.-|++++.+ +.+||+|+++|..++|+|=
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~I 53 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVEI 53 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeeec
Confidence 5799999999999998 49999999999999986 6789999999998888873
No 88
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.28 E-value=0.0065 Score=66.49 Aligned_cols=255 Identities=10% Similarity=0.109 Sum_probs=175.6
Q ss_pred cHHHHHhhcCCCHHH--HHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCC-
Q 004582 421 DLTSLSKLASRPWGS--QCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSR- 497 (744)
Q Consensus 421 ~~~ll~~L~s~~~e~--q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~- 497 (744)
+-.++.++.+++.+. |.+|...|..+.. .+|+..++.-| +..++.+-+. ...++.++..+.+|-++..+..
T Consensus 182 lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~---~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 182 LDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKE---REPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhh---cCcHHHHHHHHHHHHHHhhhhHH
Confidence 334667777776555 8889998888765 57888888766 5555555543 3678889999999999988765
Q ss_pred CCcccccccchHHHHHhhcch---hHHHHHHHHHHhccCh--hhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhc
Q 004582 498 DEMPLFHKDEICTFALFLDSE---IMEEALEIIEVLSHQQ--NYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLS 572 (744)
Q Consensus 498 nk~~iv~~Gai~~Lv~lL~s~---~~e~A~~~L~~Ls~~~--~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs 572 (744)
.-..++++|++..++-..... ...+++-+|.|++.+. ..+..|++..+-+-|.-+-.+.++-.+-.|+-|.+-|+
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vla 335 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLA 335 (832)
T ss_pred HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhh
Confidence 456678999999988776543 3467888898887764 55888888777777777777777779999999999999
Q ss_pred CCcchHHHHHhcCCcH---hHHHHhcCccHHHHHHHHHHHhcCHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHH
Q 004582 573 SGDNIVYHILYLDCTS---KLVRLLEDPILSSYCIKIIKALCTSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLL 649 (744)
Q Consensus 573 ~~~~n~~~iv~aG~v~---~Lv~lL~~~~l~~~al~~L~nLa~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~ 649 (744)
++.+.-..+.+.|.+. +++..+..+...+.+-. ...| ....-+..||.+|++.- .-..++++++
T Consensus 336 t~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd------~aQG-----~~~d~LqRLvPlLdS~R--~EAq~i~AF~ 402 (832)
T KOG3678|consen 336 TNKEVEREVRKSGTLALVEPLVASLDPGRFARDAHD------YAQG-----RGPDDLQRLVPLLDSNR--LEAQCIGAFY 402 (832)
T ss_pred hhhhhhHHHhhccchhhhhhhhhccCcchhhhhhhh------hhcc-----CChHHHHHhhhhhhcch--hhhhhhHHHH
Confidence 9988777777776554 44444433333322110 0111 11345778888887433 3333444433
Q ss_pred HHhcC----C-HHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 004582 650 SLCHE----H-TKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLDH 695 (744)
Q Consensus 650 ~Lc~~----~-~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~~ 695 (744)
+|.. + .....+..+-|+|+.|-++..+.+..+..-|..+|..+.+
T Consensus 403 -l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 403 -LCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred -HHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 3322 1 1233566678999999999997777777889999998864
No 89
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.0076 Score=69.86 Aligned_cols=186 Identities=20% Similarity=0.207 Sum_probs=146.3
Q ss_pred cchHHHHHhhcch----hHHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccC--CHHHHHHHHHHHHHhcCCcc---
Q 004582 506 DEICTFALFLDSE----IMEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTG--TRESRELAIKILCNLSSGDN--- 576 (744)
Q Consensus 506 Gai~~Lv~lL~s~----~~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~--~~~~k~~A~~aL~nLs~~~~--- 576 (744)
..|+.|+..+.+. +...|+..|..+|. .+|..++. .|+++|++.|+.. ++++...++.+++++.++++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 4677777777654 34678888888876 78888765 4589999999864 67899999999999988773
Q ss_pred ---hHH-----------HHH-hcCCcHhHHHHhc--CccHHHHHHHHHHHhc---CHHHHHHHHhhCCcHHHHHHHHcCC
Q 004582 577 ---IVY-----------HIL-YLDCTSKLVRLLE--DPILSSYCIKIIKALC---TSEARAAVAESNPCIDSIAKLLETG 636 (744)
Q Consensus 577 ---n~~-----------~iv-~aG~v~~Lv~lL~--~~~l~~~al~~L~nLa---~~e~~~~i~~~~g~V~~Lv~lL~~~ 636 (744)
+-. .++ ..|.|..|+..+. |-.++.+++..|.+|- .++-+.++....-+|..|+.+|...
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds 178 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS 178 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh
Confidence 211 222 4589999999984 4568999999999887 5789999998889999999999988
Q ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcC--CH--HHHHHHHHHHHHhh
Q 004582 637 TREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNG--NS--RGKETAKELIMLLD 694 (744)
Q Consensus 637 s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~--s~--~~r~~A~~lL~~L~ 694 (744)
-..+|..++..|..|...++...+.+.=+.+...|..++... .+ -+-+-+..+|.+|-
T Consensus 179 rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLL 240 (970)
T KOG0946|consen 179 REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLL 240 (970)
T ss_pred hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Confidence 888999999999999999888888888888889999988632 22 24566666665553
No 90
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.21 E-value=0.00035 Score=58.68 Aligned_cols=39 Identities=31% Similarity=0.627 Sum_probs=31.8
Q ss_pred cccccccCCCc-------------eecCCCccccHHHHHHHHccCCCCCCCCC
Q 004582 267 CSISLRLMYDP-------------VVIASGKTFERVWIQKWFNAGHTTCPKTH 306 (744)
Q Consensus 267 CPI~~~~m~dP-------------V~~~~G~ty~r~~I~~w~~~~~~~cP~t~ 306 (744)
|+||++-|.|| +...|||.|-..||++|+.. +.+||.|+
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 99999999554 44589999999999999976 44999985
No 91
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.021 Score=69.16 Aligned_cols=145 Identities=14% Similarity=0.170 Sum_probs=102.9
Q ss_pred chhhhcccccCCHHHHHHHHHHHHHhcCCcchHHHHHh--cCCcHhHHHHhcCc--cHHHHHHHHHHHhc---CHHHHHH
Q 004582 546 IPSIIKFLDTGTRESRELAIKILCNLSSGDNIVYHILY--LDCTSKLVRLLEDP--ILSSYCIKIIKALC---TSEARAA 618 (744)
Q Consensus 546 Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~iv~--aG~v~~Lv~lL~~~--~l~~~al~~L~nLa---~~e~~~~ 618 (744)
.+.+-.+|.+.+-.-|.+|+.||..++.+.. ..|.. ..+++.++..|.|+ .++..|+.++..++ .++-...
T Consensus 350 ~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~--~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~ 427 (1075)
T KOG2171|consen 350 FEALEAMLQSTEWKERHAALLALSVIAEGCS--DVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK 427 (1075)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcccH--HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence 3445557788888999999999998887644 22222 25566666667775 67889999999999 4565555
Q ss_pred HHhhCCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHH-HHHHHHhCCcHH-HHHHHhhcCCHHHHHHHHHHHHHhhh
Q 004582 619 VAESNPCIDSIAKLLET-GTREEQEHIVDVLLSLCHEHTK-YCQLANTESIIQ-CVVDISVNGNSRGKETAKELIMLLDH 695 (744)
Q Consensus 619 i~~~~g~V~~Lv~lL~~-~s~~~~e~A~~~L~~Lc~~~~~-~~~~v~~~G~i~-~Lv~Ll~~~s~~~r~~A~~lL~~L~~ 695 (744)
-.+ -.++.|+..+++ ++++++.+|+.+|.++...... ...-. =.+.+. .+..+..++++.+++.|+..|-...+
T Consensus 428 ~~e--~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pY-Ld~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~ 504 (1075)
T KOG2171|consen 428 HHE--RLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPY-LDGLMEKKLLLLLQSSKPYVQEQAVTAIASVAD 504 (1075)
T ss_pred HHH--hccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHH-HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 555 567789999975 6889999999999988644322 11111 123344 56667789999999999998876654
No 92
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00012 Score=84.74 Aligned_cols=54 Identities=24% Similarity=0.425 Sum_probs=49.5
Q ss_pred CccccccccccCCCceecCCCccccHHHHHHHHccCCCCCCCCCCCCCCCCCcc
Q 004582 263 EEFKCSISLRLMYDPVVIASGKTFERVWIQKWFNAGHTTCPKTHMRLDNVSVTP 316 (744)
Q Consensus 263 ~~f~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~~~l~p 316 (744)
.-+.||.|..=.+|-|++.|||.||-.||+.-+...+..||.|+.++...++.|
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 447999999999999999999999999999999988999999999998777655
No 93
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0002 Score=72.93 Aligned_cols=50 Identities=18% Similarity=0.329 Sum_probs=44.2
Q ss_pred CCccccccccccCCCceecCCCccccHHHHHH-HHccCCCCCCCCCCCCCC
Q 004582 262 PEEFKCSISLRLMYDPVVIASGKTFERVWIQK-WFNAGHTTCPKTHMRLDN 311 (744)
Q Consensus 262 p~~f~CPI~~~~m~dPV~~~~G~ty~r~~I~~-w~~~~~~~cP~t~~~l~~ 311 (744)
-.+|.|+||++.|.+|+-++|||.||-.||-. |-.+....||.|++....
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 36899999999999999999999999999999 877666779999876543
No 94
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.19 E-value=0.00017 Score=75.75 Aligned_cols=64 Identities=14% Similarity=0.393 Sum_probs=54.1
Q ss_pred CCccccccccccCCCceec-CCCccccHHHHHHHHccCCCCCCCCCCCCCCC----CCcccHHHHHHHHH
Q 004582 262 PEEFKCSISLRLMYDPVVI-ASGKTFERVWIQKWFNAGHTTCPKTHMRLDNV----SVTPNVAIKELISQ 326 (744)
Q Consensus 262 p~~f~CPI~~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~~----~l~pn~~l~~~i~~ 326 (744)
=....|++|...|.|+-++ .|=|||||+||-++|.. ..+||.|+..+..+ .+.++.+|+.++..
T Consensus 13 n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyK 81 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYK 81 (331)
T ss_pred ccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHH
Confidence 3578899999999999987 79999999999999988 88999998776543 57788888777754
No 95
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.02 Score=67.92 Aligned_cols=133 Identities=19% Similarity=0.193 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHhhhcchhhHHHh----hCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcccccccchHHH
Q 004582 436 QCDAVENIKKLLKDNGQSRHLAF----LNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPLFHKDEICTF 511 (744)
Q Consensus 436 q~~Al~~Lr~Lak~~~~~r~~i~----~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~iv~~Gai~~L 511 (744)
..-++.+|+++.+.+++-..... --|-++.+..+|+.. +++++|.-|+.++..+..+.+....++..|.+..|
T Consensus 1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~---~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCR---KHPKLQILALQVILLATANKECVTDLATCNVLTTL 1818 (2235)
T ss_pred HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHc---CCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHH
Confidence 34589999999998885433222 247788888999873 78999999999999999998888889999999999
Q ss_pred HHhhcch--hHHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccC-CHHHHHHHHHHHHHh
Q 004582 512 ALFLDSE--IMEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTG-TRESRELAIKILCNL 571 (744)
Q Consensus 512 v~lL~s~--~~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~-~~~~k~~A~~aL~nL 571 (744)
+.+|.+- ..+.++.+|+.|++..+.-...++.|++.-+..++-.. ..+.|..|+..|..|
T Consensus 1819 L~lLHS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl 1881 (2235)
T KOG1789|consen 1819 LTLLHSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKL 1881 (2235)
T ss_pred HHHHhcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHh
Confidence 9999764 45789999999999888877777888887777666433 233444443333333
No 96
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.14 E-value=0.005 Score=63.30 Aligned_cols=185 Identities=19% Similarity=0.250 Sum_probs=103.7
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhc--chhhHHHhh--CCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcccc
Q 004582 428 LASRPWGSQCDAVENIKKLLKDN--GQSRHLAFL--NSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPLF 503 (744)
Q Consensus 428 L~s~~~e~q~~Al~~Lr~Lak~~--~~~r~~i~~--~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~iv 503 (744)
-.+.+|+.|..|+..|+.+.+.+ ......+.. ..++..++..+.+ ....+.
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d----~Rs~v~--------------------- 70 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD----LRSKVS--------------------- 70 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H----H---HH---------------------
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh----hHHHHH---------------------
Confidence 35679999999999999999876 111221111 1233333333333 122233
Q ss_pred cccchHHHHHhhcchhHHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCCcchHHHHHh
Q 004582 504 HKDEICTFALFLDSEIMEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIVYHILY 583 (744)
Q Consensus 504 ~~Gai~~Lv~lL~s~~~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~iv~ 583 (744)
..|+.++..|+..-...-.-.....+|.|++.+.+++.-+++.|..+|..+...-.....++
T Consensus 71 -----------------~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~- 132 (228)
T PF12348_consen 71 -----------------KTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL- 132 (228)
T ss_dssp -----------------HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-
T ss_pred -----------------HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-
Confidence 44555555554433332222234578999999999999999999999998887654112211
Q ss_pred cCCcHhHHHHhcC--ccHHHHHHHHHHHhc--CHHHHHHHHh---hCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Q 004582 584 LDCTSKLVRLLED--PILSSYCIKIIKALC--TSEARAAVAE---SNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHT 656 (744)
Q Consensus 584 aG~v~~Lv~lL~~--~~l~~~al~~L~nLa--~~e~~~~i~~---~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~ 656 (744)
++.+...+.+ +.++..++..|..+. .+.....+-. ....++.+...+.++++++|+.|-.+++.+...-+
T Consensus 133 ---~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 133 ---LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp ---HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred ---HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 3344444443 567888888888887 3311111111 02467888889999999999999999999976654
Q ss_pred HH
Q 004582 657 KY 658 (744)
Q Consensus 657 ~~ 658 (744)
+.
T Consensus 210 ~~ 211 (228)
T PF12348_consen 210 ER 211 (228)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 97
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.03 E-value=0.0082 Score=66.44 Aligned_cols=245 Identities=16% Similarity=0.166 Sum_probs=166.6
Q ss_pred HHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcccccccchHHHHHhhcchh--
Q 004582 442 NIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPLFHKDEICTFALFLDSEI-- 519 (744)
Q Consensus 442 ~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~iv~~Gai~~Lv~lL~s~~-- 519 (744)
.|..+.+.++.-|..+.-.-+.+.+..++=+ .+.+++-+|..++..+..+...-..+.+.+.=..++.-|+.+.
T Consensus 6 ~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~----~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~ 81 (371)
T PF14664_consen 6 DLVDLLKRHPTLKYDLVLSFFGERIQCMLLS----DSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKN 81 (371)
T ss_pred HHHHHHHhCchhhhhhhHHHHHHHHHHHHCC----CcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCC
Confidence 3445555666666665555566666654434 3588999999999999888877766666665555556665432
Q ss_pred ---HHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcC
Q 004582 520 ---MEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLED 596 (744)
Q Consensus 520 ---~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~ 596 (744)
.+.|+.....+.....+...+ -.|.+..|+.+..+.++..+..|+.+|+.|+..+. ..++.+|++..|++.+-+
T Consensus 82 ~~ER~QALkliR~~l~~~~~~~~~-~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d 158 (371)
T PF14664_consen 82 DVEREQALKLIRAFLEIKKGPKEI-PRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALID 158 (371)
T ss_pred hHHHHHHHHHHHHHHHhcCCcccC-CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHh
Confidence 256887776665544333333 45677888888888889999999999999998654 466789999999999976
Q ss_pred c--cHHHHHHHHHHHhc-CHHHHHHHHhhCCcHHHHHHHHcCC-------CH--HHHHHHHHHHHHHhcCCHHHHHHHHh
Q 004582 597 P--ILSSYCIKIIKALC-TSEARAAVAESNPCIDSIAKLLETG-------TR--EEQEHIVDVLLSLCHEHTKYCQLANT 664 (744)
Q Consensus 597 ~--~l~~~al~~L~nLa-~~e~~~~i~~~~g~V~~Lv~lL~~~-------s~--~~~e~A~~~L~~Lc~~~~~~~~~v~~ 664 (744)
+ ++.+.++.++-.+- +|..|.-+.. .--+..++.-.... +. +.-.++..++..+=+.-.+......+
T Consensus 159 ~~~~~~~~l~~~lL~lLd~p~tR~yl~~-~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~ 237 (371)
T PF14664_consen 159 GSFSISESLLDTLLYLLDSPRTRKYLRP-GFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMN 237 (371)
T ss_pred ccHhHHHHHHHHHHHHhCCcchhhhhcC-CccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecC
Confidence 5 57788888888888 9999887765 33455555544321 22 22334444444443333333333333
Q ss_pred C-CcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 004582 665 E-SIIQCVVDISVNGNSRGKETAKELIMLLD 694 (744)
Q Consensus 665 ~-G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~ 694 (744)
. .++..|+..+...++++|+....+|.-+=
T Consensus 238 ~~~~lksLv~~L~~p~~~ir~~Ildll~dll 268 (371)
T PF14664_consen 238 DFRGLKSLVDSLRLPNPEIRKAILDLLFDLL 268 (371)
T ss_pred CchHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3 58999999999999999999988875443
No 98
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.043 Score=66.50 Aligned_cols=252 Identities=12% Similarity=0.111 Sum_probs=148.6
Q ss_pred CCCHHHHHHHHHHHHHHhhhcchhhHHHh--hCCChHHHHHHhcccc-----------cCCC-HHHHHHHHHHHHHHhcC
Q 004582 430 SRPWGSQCDAVENIKKLLKDNGQSRHLAF--LNSYVKPLIKFLKDAH-----------NLCD-AKAQKDGAEVLLAILSQ 495 (744)
Q Consensus 430 s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~--~~G~I~~LV~lL~~~~-----------~~~d-~~~q~~A~~~L~nLs~~ 495 (744)
+.+...|..|++.|..+++.-+.-..... ..-.++.++.++-.-. +..+ ..--..|..+|-.++.+
T Consensus 260 ~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~ 339 (1075)
T KOG2171|consen 260 ELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALH 339 (1075)
T ss_pred cccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhc
Confidence 35788999999999999987333222222 2233444444442210 0001 11345566666666654
Q ss_pred CCCCcccccccchHHHHHh----hcchh-H--HHHHHHHHHhccChhhhHHHHh---cCCchhhhcccccCCHHHHHHHH
Q 004582 496 SRDEMPLFHKDEICTFALF----LDSEI-M--EEALEIIEVLSHQQNYASELVA---SGIIPSIIKFLDTGTRESRELAI 565 (744)
Q Consensus 496 ~~nk~~iv~~Gai~~Lv~l----L~s~~-~--e~A~~~L~~Ls~~~~~k~~I~~---~G~Ip~Lv~lL~s~~~~~k~~A~ 565 (744)
-..+. +++++... |.+.. . ..|+-+|..++ ++....+. ...++.++..|.++.+.+|-.|+
T Consensus 340 L~g~~------v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~---EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~ 410 (1075)
T KOG2171|consen 340 LGGKQ------VLPPLFEALEAMLQSTEWKERHAALLALSVIA---EGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAAL 410 (1075)
T ss_pred CChhh------ehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH---cccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 33322 34444444 44543 2 23444444433 44333332 45777778888999999999999
Q ss_pred HHHHHhcCCcc-hHHHHHhcCCcHhHHHHhcCc---cHHHHHHHHHHHhc--CH-HHHHHHHhhCCcHH-HHHHHHcCCC
Q 004582 566 KILCNLSSGDN-IVYHILYLDCTSKLVRLLEDP---ILSSYCIKIIKALC--TS-EARAAVAESNPCID-SIAKLLETGT 637 (744)
Q Consensus 566 ~aL~nLs~~~~-n~~~iv~aG~v~~Lv~lL~~~---~l~~~al~~L~nLa--~~-e~~~~i~~~~g~V~-~Lv~lL~~~s 637 (744)
.||..+|.+=. .-..-...-.+|.|+..+.++ .+...|+.+|-|++ ++ +.-.-..+ +.+. .+..++.+++
T Consensus 411 naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd--~lm~~~l~~L~~~~~ 488 (1075)
T KOG2171|consen 411 NAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD--GLMEKKLLLLLQSSK 488 (1075)
T ss_pred HHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH--HHHHHHHHHHhcCCc
Confidence 99999998733 233333456777888888663 56788888888888 32 22222222 4444 2333446899
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHH-HhCCcHHHHHHHhhcCC-HHHHHHHHHHHHHhh
Q 004582 638 REEQEHIVDVLLSLCHEHTKYCQLA-NTESIIQCVVDISVNGN-SRGKETAKELIMLLD 694 (744)
Q Consensus 638 ~~~~e~A~~~L~~Lc~~~~~~~~~v-~~~G~i~~Lv~Ll~~~s-~~~r~~A~~lL~~L~ 694 (744)
+.+|+.++.+|.+++-.... ..+ .-.-.+|.|...+.+.+ .+.|.-..+.+.+++
T Consensus 489 ~~v~e~vvtaIasvA~AA~~--~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcis 545 (1075)
T KOG2171|consen 489 PYVQEQAVTAIASVADAAQE--KFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLS 545 (1075)
T ss_pred hhHHHHHHHHHHHHHHHHhh--hhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHH
Confidence 99999999999998743221 111 11236899999998877 455554444444443
No 99
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.98 E-value=0.042 Score=61.63 Aligned_cols=207 Identities=14% Similarity=-0.003 Sum_probs=109.0
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCccc
Q 004582 423 TSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPL 502 (744)
Q Consensus 423 ~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~i 502 (744)
.++..|.+.+..++..++..|..+ ...++.+.|+.+|++ .++.++..++.++..
T Consensus 90 ~L~~~L~d~~~~vr~aaa~ALg~i-----------~~~~a~~~L~~~L~~----~~p~vR~aal~al~~----------- 143 (410)
T TIGR02270 90 SVLAVLQAGPEGLCAGIQAALGWL-----------GGRQAEPWLEPLLAA----SEPPGRAIGLAALGA----------- 143 (410)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcC-----------CchHHHHHHHHHhcC----CChHHHHHHHHHHHh-----------
Confidence 344444454555555555544432 123455566666655 456666555544433
Q ss_pred ccccchHHHHHhhcchh---HHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCCcchHH
Q 004582 503 FHKDEICTFALFLDSEI---MEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIVY 579 (744)
Q Consensus 503 v~~Gai~~Lv~lL~s~~---~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~ 579 (744)
......+.++.+|+.+. ...|+.+|..+ ....++|.|...+.+.++.+|..|+.+|..+-.
T Consensus 144 r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l----------~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~------ 207 (410)
T TIGR02270 144 HRHDPGPALEAALTHEDALVRAAALRALGEL----------PRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS------ 207 (410)
T ss_pred hccChHHHHHHHhcCCCHHHHHHHHHHHHhh----------ccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC------
Confidence 11223455555554332 23455555432 234455566666666666666666666643322
Q ss_pred HHHhcCCcHhHHHHhcC-ccHHHHHHHHHHHhcCHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Q 004582 580 HILYLDCTSKLVRLLED-PILSSYCIKIIKALCTSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKY 658 (744)
Q Consensus 580 ~iv~aG~v~~Lv~lL~~-~~l~~~al~~L~nLa~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~ 658 (744)
.++++.+..+... +.-....+.++..+. .....++.|..++... .++..++.+|..+-
T Consensus 208 ----~~A~~~l~~~~~~~g~~~~~~l~~~lal~---------~~~~a~~~L~~ll~d~--~vr~~a~~AlG~lg------ 266 (410)
T TIGR02270 208 ----RLAWGVCRRFQVLEGGPHRQRLLVLLAVA---------GGPDAQAWLRELLQAA--ATRREALRAVGLVG------ 266 (410)
T ss_pred ----HhHHHHHHHHHhccCccHHHHHHHHHHhC---------CchhHHHHHHHHhcCh--hhHHHHHHHHHHcC------
Confidence 1223344443322 222222222222222 1123466667777553 37777777766542
Q ss_pred HHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcCCC
Q 004582 659 CQLANTESIIQCVVDISVNGNSRGKETAKELIMLLDHCKED 699 (744)
Q Consensus 659 ~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~~~~~~ 699 (744)
...+++.|+..+.+.. .++.|...++.+++-+-.
T Consensus 267 -----~p~av~~L~~~l~d~~--~aR~A~eA~~~ItG~~l~ 300 (410)
T TIGR02270 267 -----DVEAAPWCLEAMREPP--WARLAGEAFSLITGMDVA 300 (410)
T ss_pred -----CcchHHHHHHHhcCcH--HHHHHHHHHHHhhCCCcc
Confidence 2347889999887655 999999999999874443
No 100
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.95 E-value=0.014 Score=63.72 Aligned_cols=218 Identities=17% Similarity=0.139 Sum_probs=161.4
Q ss_pred CCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcccccccchHH
Q 004582 431 RPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPLFHKDEICT 510 (744)
Q Consensus 431 ~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~iv~~Gai~~ 510 (744)
.+.+...-|+..|..+.+. ++.|..++..+++..++..|.+ ...+.+.|-..+-+++.|.-++.-...+..-+.|+.
T Consensus 169 ~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s--~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~ 245 (442)
T KOG2759|consen 169 TNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILAS--TKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQD 245 (442)
T ss_pred CCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhc--cCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHH
Confidence 5667777788899999987 6889999989999999999943 137889999999999999887776655566689999
Q ss_pred HHHhhcchhHH----HHHHHHHHhccChh---hhHHH---HhcCCchhhhcccccC---CHHHHH-------HHHHHHHH
Q 004582 511 FALFLDSEIME----EALEIIEVLSHQQN---YASEL---VASGIIPSIIKFLDTG---TRESRE-------LAIKILCN 570 (744)
Q Consensus 511 Lv~lL~s~~~e----~A~~~L~~Ls~~~~---~k~~I---~~~G~Ip~Lv~lL~s~---~~~~k~-------~A~~aL~n 570 (744)
|..+++....| -.++++.|+....+ .++.+ +-.+.++.-++.|... ++++.. .--.-...
T Consensus 246 L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~ 325 (442)
T KOG2759|consen 246 LSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQD 325 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 99999876654 57888899887663 23322 2356677777777653 332221 11222334
Q ss_pred hcCCc------------------------chHHHHHhc--CCcHhHHHHhc---CccHHHHHHHHHHHhc--CHHHHHHH
Q 004582 571 LSSGD------------------------NIVYHILYL--DCTSKLVRLLE---DPILSSYCIKIIKALC--TSEARAAV 619 (744)
Q Consensus 571 Ls~~~------------------------~n~~~iv~a--G~v~~Lv~lL~---~~~l~~~al~~L~nLa--~~e~~~~i 619 (744)
||+.+ +|..++-+. ..+..|+.+|. ||.+..-|+.-+.... .|+|+.-+
T Consensus 326 LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv 405 (442)
T KOG2759|consen 326 LSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVV 405 (442)
T ss_pred hccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHH
Confidence 45443 355555443 57888888883 4667777888888888 89999999
Q ss_pred HhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Q 004582 620 AESNPCIDSIAKLLETGTREEQEHIVDVLLSLC 652 (744)
Q Consensus 620 ~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc 652 (744)
.+ -|+=..++++|.+.+|+++-+|+.++..|-
T Consensus 406 ~k-~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 406 EK-YGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred HH-hchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 88 488999999999999999999999887664
No 101
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.096 Score=57.52 Aligned_cols=231 Identities=14% Similarity=0.174 Sum_probs=165.0
Q ss_pred HHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCC-----CC-----Ccccccccch
Q 004582 439 AVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQS-----RD-----EMPLFHKDEI 508 (744)
Q Consensus 439 Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~-----~n-----k~~iv~~Gai 508 (744)
.+..+..+|.- |+--..+++.++++.|+.+|++ .|..+..+.+..|..|...+ .+ ...+++.+++
T Consensus 104 ~IQ~mhvlAt~-PdLYp~lveln~V~slL~LLgH----eNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vl 178 (536)
T KOG2734|consen 104 IIQEMHVLATM-PDLYPILVELNAVQSLLELLGH----ENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVL 178 (536)
T ss_pred HHHHHHhhhcC-hHHHHHHHHhccHHHHHHHhcC----CCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHH
Confidence 45556666643 6666678899999999999998 78889999999999996522 11 1234577888
Q ss_pred HHHHHhh---cchhH------HHHHHHHHHhccChh-hhHHHHhcCCchhhhcccccC--CHHHHHHHHHHHHHhcCCcc
Q 004582 509 CTFALFL---DSEIM------EEALEIIEVLSHQQN-YASELVASGIIPSIIKFLDTG--TRESRELAIKILCNLSSGDN 576 (744)
Q Consensus 509 ~~Lv~lL---~s~~~------e~A~~~L~~Ls~~~~-~k~~I~~~G~Ip~Lv~lL~s~--~~~~k~~A~~aL~nLs~~~~ 576 (744)
+.|++-+ +..+. ..+++++.|+..... ....+++.|.+.-|+.-+... -..-+..|..+|.-+-.+.+
T Consensus 179 aLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~ 258 (536)
T KOG2734|consen 179 ALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSD 258 (536)
T ss_pred HHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCc
Confidence 8887664 44443 467888888876654 477777888777776644432 23467788888887776654
Q ss_pred -hHHHHHhcCCcHhHHHHh-----cCc------cHHHHHHHHHHHhc-CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHH
Q 004582 577 -IVYHILYLDCTSKLVRLL-----EDP------ILSSYCIKIIKALC-TSEARAAVAESNPCIDSIAKLLETGTREEQEH 643 (744)
Q Consensus 577 -n~~~iv~aG~v~~Lv~lL-----~~~------~l~~~al~~L~nLa-~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~ 643 (744)
|+.......+|..|++-+ .+| .+.++...+|+.+- .++|+..++.. .++.-..=+++. ....+..
T Consensus 259 e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~-EGlqLm~Lmlr~-Kk~sr~S 336 (536)
T KOG2734|consen 259 ENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKG-EGLQLMNLMLRE-KKVSRGS 336 (536)
T ss_pred hhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhcc-ccHHHHHHHHHH-HHHhhhh
Confidence 788888889999999887 232 46778888888888 99999999984 445544444443 5667888
Q ss_pred HHHHHHHHhcCCH--HHHHHHHhCCcHHHHHHHhh
Q 004582 644 IVDVLLSLCHEHT--KYCQLANTESIIQCVVDISV 676 (744)
Q Consensus 644 A~~~L~~Lc~~~~--~~~~~v~~~G~i~~Lv~Ll~ 676 (744)
|+.+|-....+.. .+|....+.++...+..+..
T Consensus 337 alkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 337 ALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 9999988887765 56777777777666666543
No 102
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.78 E-value=0.0017 Score=47.38 Aligned_cols=40 Identities=28% Similarity=0.391 Sum_probs=36.5
Q ss_pred hhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcC
Q 004582 534 QNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSS 573 (744)
Q Consensus 534 ~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~ 573 (744)
++++..+++.|++|+|+++|.+++.++++.|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3578888899999999999999999999999999999973
No 103
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.75 E-value=0.013 Score=66.76 Aligned_cols=261 Identities=14% Similarity=0.093 Sum_probs=162.4
Q ss_pred CCcHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhh-CCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCC
Q 004582 419 GTDLTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFL-NSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSR 497 (744)
Q Consensus 419 ~~~~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~-~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~ 497 (744)
-++|+|++...+.++..|..|+..+-...-...+ ..+.. ..+++.+..+-.+ .++.++++-+.+|..|.....
T Consensus 174 ~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q--al~~~iD~Fle~lFalanD----~~~eVRk~vC~alv~Llevr~ 247 (885)
T KOG2023|consen 174 IMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ--ALYVHIDKFLEILFALAND----EDPEVRKNVCRALVFLLEVRP 247 (885)
T ss_pred HhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH--HHHHHHHHHHHHHHHHccC----CCHHHHHHHHHHHHHHHHhcH
Confidence 4678999999999999999999988877654332 23332 4567777777665 799999999999999977555
Q ss_pred CCcccccccchHHHHHhhcc---hhHHHHHHHHHHhccChhhhHHHHh--cCCchhhhcccccCCH--------------
Q 004582 498 DEMPLFHKDEICTFALFLDS---EIMEEALEIIEVLSHQQNYASELVA--SGIIPSIIKFLDTGTR-------------- 558 (744)
Q Consensus 498 nk~~iv~~Gai~~Lv~lL~s---~~~e~A~~~L~~Ls~~~~~k~~I~~--~G~Ip~Lv~lL~s~~~-------------- 558 (744)
.|..--=.+.|.-++..-.. ++.-+|+.....++..+-.+..+.. ...||.|+.-+...+.
T Consensus 248 dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~v 327 (885)
T KOG2023|consen 248 DKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESV 327 (885)
T ss_pred HhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccC
Confidence 55432223455555555432 3344677777777776655555543 4567776654322110
Q ss_pred ------------------------------------------HHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcC
Q 004582 559 ------------------------------------------ESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLED 596 (744)
Q Consensus 559 ------------------------------------------~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~ 596 (744)
..|+.++.+|--|+ .+.....+|.++.+|++
T Consensus 328 pDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLa-------nvf~~elL~~l~PlLk~ 400 (885)
T KOG2023|consen 328 PDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLA-------NVFGDELLPILLPLLKE 400 (885)
T ss_pred CchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHH-------HhhHHHHHHHHHHHHHH
Confidence 13333333332222 23344566777777643
Q ss_pred ----cc--HHHHHHHHHHHhc--CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCc-
Q 004582 597 ----PI--LSSYCIKIIKALC--TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTESI- 667 (744)
Q Consensus 597 ----~~--l~~~al~~L~nLa--~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~- 667 (744)
++ +++.++-+|+.+| +-.|-..-.- ..||.|+++|.+..|-+|.-.+|+|...+..-.. .-.+.-.
T Consensus 401 ~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lp--eLip~l~~~L~DKkplVRsITCWTLsRys~wv~~---~~~~~~f~ 475 (885)
T KOG2023|consen 401 HLSSEEWKVREAGVLALGAIAEGCMQGFVPHLP--ELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQ---DSRDEYFK 475 (885)
T ss_pred HcCcchhhhhhhhHHHHHHHHHHHhhhcccchH--HHHHHHHHHhccCccceeeeeeeeHhhhhhhHhc---CChHhhhH
Confidence 33 5677777777776 3333221111 3578889999999999999999988776522100 0011223
Q ss_pred --HHHHHHHhhcCCHHHHHHHHHHHHHhhhcC
Q 004582 668 --IQCVVDISVNGNSRGKETAKELIMLLDHCK 697 (744)
Q Consensus 668 --i~~Lv~Ll~~~s~~~r~~A~~lL~~L~~~~ 697 (744)
+..|+..+.+++.++++.|+.++..|.+..
T Consensus 476 pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A 507 (885)
T KOG2023|consen 476 PVLEGLLRRLLDSNKKVQEAACSAFATLEEEA 507 (885)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc
Confidence 344455566899999999999999887543
No 104
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.62 E-value=0.047 Score=62.16 Aligned_cols=235 Identities=14% Similarity=0.172 Sum_probs=158.1
Q ss_pred CCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccC-CCHHHHHHHHHHHHHHhc-CCCCCccccc-cc
Q 004582 430 SRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNL-CDAKAQKDGAEVLLAILS-QSRDEMPLFH-KD 506 (744)
Q Consensus 430 s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~-~d~~~q~~A~~~L~nLs~-~~~nk~~iv~-~G 506 (744)
..++++..+|+..|.++.-.++..|...++.|..+.+++.|+...+. .+.++.--...+|+-++. ....+..+++ .+
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~ 122 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH 122 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence 34788999999999999999999999999999999999999874211 256777777777777754 3444555554 47
Q ss_pred chHHHHHhhcch--------------------hHHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccC---------C
Q 004582 507 EICTFALFLDSE--------------------IMEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTG---------T 557 (744)
Q Consensus 507 ai~~Lv~lL~s~--------------------~~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~---------~ 557 (744)
++..|+..|... ....++.+++|+..+......--..+.++.|+.+|..- .
T Consensus 123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l 202 (446)
T PF10165_consen 123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPL 202 (446)
T ss_pred hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcc
Confidence 888887766321 02468889999988765544312355666666654321 2
Q ss_pred HHHHHHHHHHHHHhcCCcchH--------HHH----HhcCCcHhHHHHhcC-------c---cHHHHHHHHHHHhc--CH
Q 004582 558 RESRELAIKILCNLSSGDNIV--------YHI----LYLDCTSKLVRLLED-------P---ILSSYCIKIIKALC--TS 613 (744)
Q Consensus 558 ~~~k~~A~~aL~nLs~~~~n~--------~~i----v~aG~v~~Lv~lL~~-------~---~l~~~al~~L~nLa--~~ 613 (744)
......++.+|.|+-...... ..+ ....++..|+.+|.. . +...-.+.+|.+++ +.
T Consensus 203 ~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~ 282 (446)
T PF10165_consen 203 DPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAR 282 (446)
T ss_pred hhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcH
Confidence 367788888888883211100 000 122456667777621 1 34556677788888 45
Q ss_pred HHHHHHHh---------------hCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCC
Q 004582 614 EARAAVAE---------------SNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTES 666 (744)
Q Consensus 614 e~~~~i~~---------------~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G 666 (744)
..|..+.. ....-..|++++.+..+.++..+...|+.||..+.. +.+..-|
T Consensus 283 ~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~~--~~v~~~G 348 (446)
T PF10165_consen 283 EVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDAS--RFVKYVG 348 (446)
T ss_pred HHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhHH--HHHHHcC
Confidence 55555443 234556899999888899999999999999977654 5565555
No 105
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.11 Score=55.01 Aligned_cols=266 Identities=16% Similarity=0.138 Sum_probs=171.9
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhhcchhhH----HHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCC
Q 004582 424 SLSKLASRPWGSQCDAVENIKKLLKDNGQSRH----LAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDE 499 (744)
Q Consensus 424 ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~----~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk 499 (744)
+=..|..++..++.-|+..+..+..+.+.|-. .++.+|.++.++..+.. .|.++-++|...+..++.....-
T Consensus 87 LQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg----eddeVAkAAiesikrialfpaal 162 (524)
T KOG4413|consen 87 LQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG----EDDEVAKAAIESIKRIALFPAAL 162 (524)
T ss_pred HHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC----CcHHHHHHHHHHHHHHHhcHHHH
Confidence 33445666778888888888888887664433 35689999999999987 78899999999999998766655
Q ss_pred cccccccchHHHHHh-h--cch--hHHHHHHHH-HHhccChhhhHHHHhcCCchhhhccccc-CCHHHHHHHHHHHHHhc
Q 004582 500 MPLFHKDEICTFALF-L--DSE--IMEEALEII-EVLSHQQNYASELVASGIIPSIIKFLDT-GTRESRELAIKILCNLS 572 (744)
Q Consensus 500 ~~iv~~Gai~~Lv~l-L--~s~--~~e~A~~~L-~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s-~~~~~k~~A~~aL~nLs 572 (744)
..+.+......+-.. | +.. ..-..+..+ ...|..++.....-.+|.+..|..=|+. .+.-++.+++...+.|+
T Consensus 163 eaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLa 242 (524)
T KOG4413|consen 163 EAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELA 242 (524)
T ss_pred HHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHH
Confidence 555555554444222 1 111 112333333 2233334444455567888877776664 55568889999999999
Q ss_pred CCcchHHHHHhcCCcHhHHHHhcC----ccHHH----HHHHHHHHhc-CHHHHHHHHhh-CCcHHHHHHHHcCCCHHHHH
Q 004582 573 SGDNIVYHILYLDCTSKLVRLLED----PILSS----YCIKIIKALC-TSEARAAVAES-NPCIDSIAKLLETGTREEQE 642 (744)
Q Consensus 573 ~~~~n~~~iv~aG~v~~Lv~lL~~----~~l~~----~al~~L~nLa-~~e~~~~i~~~-~g~V~~Lv~lL~~~s~~~~e 642 (744)
.....+..+.+.|.|..+..++.. |--.- -....+.+++ ..-.-+++++. --+|+.-.+++...+|..++
T Consensus 243 eteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaie 322 (524)
T KOG4413|consen 243 ETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIE 322 (524)
T ss_pred HHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHH
Confidence 888888889999999999999832 21111 2233444554 22122222221 12356667788889999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhCC--cHHHHHHHhhcCCHHHH-HHHHHHHHHhh
Q 004582 643 HIVDVLLSLCHEHTKYCQLANTES--IIQCVVDISVNGNSRGK-ETAKELIMLLD 694 (744)
Q Consensus 643 ~A~~~L~~Lc~~~~~~~~~v~~~G--~i~~Lv~Ll~~~s~~~r-~~A~~lL~~L~ 694 (744)
.|+.+|..|.++-+ ..+++...| ....++.-..+.+..++ +.|...|..+.
T Consensus 323 aAiDalGilGSnte-GadlllkTgppaaehllarafdqnahakqeaaihaLaaIa 376 (524)
T KOG4413|consen 323 AAIDALGILGSNTE-GADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIA 376 (524)
T ss_pred HHHHHHHhccCCcc-hhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhh
Confidence 99999999977754 346666666 45555554445554443 45555665554
No 106
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.38 E-value=0.0071 Score=43.98 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=35.2
Q ss_pred chhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHh
Q 004582 451 GQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAIL 493 (744)
Q Consensus 451 ~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs 493 (744)
++++..+.+.|+++.|+++|.+ .+..+++.|+++|.|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~----~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKS----EDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHc
Confidence 3578889999999999999987 78999999999999986
No 107
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=96.37 E-value=0.024 Score=62.24 Aligned_cols=157 Identities=9% Similarity=0.060 Sum_probs=125.7
Q ss_pred hHHHHhcCCchhhhcccccCCHHH--HHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhc---CccHHHHHHHHHHHhc
Q 004582 537 ASELVASGIIPSIIKFLDTGTRES--RELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLE---DPILSSYCIKIIKALC 611 (744)
Q Consensus 537 k~~I~~~G~Ip~Lv~lL~s~~~~~--k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~---~~~l~~~al~~L~nLa 611 (744)
+..|...|++..|++++..++.+. +..|+..|-.+.. .+|+.++++-| +..++.+-. ..++.+..+.+|.++-
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 567778999999999999998864 8889988887754 57888888766 444444443 2478899999999999
Q ss_pred --CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHH
Q 004582 612 --TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHT-KYCQLANTESIIQCVVDISVNGNSRGKETAKE 688 (744)
Q Consensus 612 --~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~-~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~ 688 (744)
+++.+..++. .|+++.++-..+..+|....+|+-+|.+++-+.. +....+++..+-.-|.-|..+.++-.|-.|+-
T Consensus 251 KHSeet~~~Lva-a~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl 329 (832)
T KOG3678|consen 251 KHSEETCQRLVA-AGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL 329 (832)
T ss_pred hhhHHHHHHHHh-hcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence 6788888998 5889999888888999999999999999875543 44556667778888999988888888888988
Q ss_pred HHHHhhhc
Q 004582 689 LIMLLDHC 696 (744)
Q Consensus 689 lL~~L~~~ 696 (744)
+...|...
T Consensus 330 AV~vlat~ 337 (832)
T KOG3678|consen 330 AVAVLATN 337 (832)
T ss_pred HHhhhhhh
Confidence 88877643
No 108
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.36 E-value=0.098 Score=57.03 Aligned_cols=210 Identities=15% Similarity=0.105 Sum_probs=121.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcc
Q 004582 422 LTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMP 501 (744)
Q Consensus 422 ~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~ 501 (744)
..++..+.+.++.+|..|+..+..+.. .-+++.+..+|.+ .++.++..|+.+|..+
T Consensus 46 ~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d----~~~~vr~~a~~aLg~~--------- 101 (335)
T COG1413 46 DELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSD----EDPRVRDAAADALGEL--------- 101 (335)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcC----CCHHHHHHHHHHHHcc---------
Confidence 346666777778888888877554432 2468888888887 6788888888766555
Q ss_pred cccccchHHHHHhhcc-h---hHHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCCcch
Q 004582 502 LFHKDEICTFALFLDS-E---IMEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNI 577 (744)
Q Consensus 502 iv~~Gai~~Lv~lL~s-~---~~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n 577 (744)
-...+++.|+.+|.. + +...|+.+|..+- +..++.+|+.++....... ++.++ .......
T Consensus 102 -~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~----------~~~a~~~l~~~l~~~~~~~---a~~~~--~~~~~~~ 165 (335)
T COG1413 102 -GDPEAVPPLVELLENDENEGVRAAAARALGKLG----------DERALDPLLEALQDEDSGS---AAAAL--DAALLDV 165 (335)
T ss_pred -CChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC----------chhhhHHHHHHhccchhhh---hhhhc--cchHHHH
Confidence 223467777777763 3 2345555555332 2334777777777665444 22221 0000011
Q ss_pred HHHH-------HhcCCcHhHHHHhcCcc--HHHHHHHHHHHhc-CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHH
Q 004582 578 VYHI-------LYLDCTSKLVRLLEDPI--LSSYCIKIIKALC-TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDV 647 (744)
Q Consensus 578 ~~~i-------v~aG~v~~Lv~lL~~~~--l~~~al~~L~nLa-~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~ 647 (744)
+... ...-.++.+..++.+.. ++..|..+|..+. .. ...++.++..+...+..++..++..
T Consensus 166 r~~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~ 236 (335)
T COG1413 166 RAAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLA 236 (335)
T ss_pred HHHHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHH
Confidence 1111 22345666666666665 4555565666555 22 1345666777777777777666665
Q ss_pred HHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHH
Q 004582 648 LLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIM 691 (744)
Q Consensus 648 L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~ 691 (744)
|..+-. .-.++.++..+.+.+...+..+..++.
T Consensus 237 l~~~~~-----------~~~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 237 LGEIGD-----------EEAVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred hcccCc-----------chhHHHHHHHHhccchHHHHHHHHHhc
Confidence 544321 123566777777777766655555543
No 109
>PTZ00429 beta-adaptin; Provisional
Probab=96.35 E-value=0.27 Score=59.20 Aligned_cols=245 Identities=16% Similarity=0.098 Sum_probs=160.8
Q ss_pred cHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCc
Q 004582 421 DLTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEM 500 (744)
Q Consensus 421 ~~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~ 500 (744)
..++-..|.+.+...+..|+..+-.....+.+. ..+++.+++++.+ .|...++-....|.+.+.....-.
T Consensus 34 ~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~S----~d~elKKLvYLYL~~ya~~~pela 103 (746)
T PTZ00429 34 GAELQNDLNGTDSYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAPS----TDLELKKLVYLYVLSTARLQPEKA 103 (746)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhCC----CCHHHHHHHHHHHHHHcccChHHH
Confidence 345667788888877888887555444322221 2356777888877 789999988888888865332211
Q ss_pred ccccccchHHHHHhhcchh---HHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCCcch
Q 004582 501 PLFHKDEICTFALFLDSEI---MEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNI 577 (744)
Q Consensus 501 ~iv~~Gai~~Lv~lL~s~~---~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n 577 (744)
. -++..|.+=+.+.+ ...|+.+|.++-. ..+. .-.++++.+.|.+.++-+|+.|+.++..|-....
T Consensus 104 l----LaINtl~KDl~d~Np~IRaLALRtLs~Ir~-----~~i~-e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p- 172 (746)
T PTZ00429 104 L----LAVNTFLQDTTNSSPVVRALAVRTMMCIRV-----SSVL-EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM- 172 (746)
T ss_pred H----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCc-----HHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-
Confidence 1 13444444444433 3456666665433 1111 2246677888889999999999999999876443
Q ss_pred HHHHHhcCCcHhHHHHhcC--ccHHHHHHHHHHHhc--CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Q 004582 578 VYHILYLDCTSKLVRLLED--PILSSYCIKIIKALC--TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCH 653 (744)
Q Consensus 578 ~~~iv~aG~v~~Lv~lL~~--~~l~~~al~~L~nLa--~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~ 653 (744)
..+.+.|.++.|.++|.| +.++..|+.+|..+. ++. .-.+. .+.+..|+..|...++-.|-..+.+|....-
T Consensus 173 -elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~-~l~l~--~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P 248 (746)
T PTZ00429 173 -QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSE-KIESS--NEWVNRLVYHLPECNEWGQLYILELLAAQRP 248 (746)
T ss_pred -ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCch-hhHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHhcCC
Confidence 234467899999999965 578899999999998 343 22222 2557778888877788888877777654322
Q ss_pred CCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 004582 654 EHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLDH 695 (744)
Q Consensus 654 ~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~~ 695 (744)
.+... ...++..+...+.+.++.+.-.|++++..+..
T Consensus 249 ~~~~e-----~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~ 285 (746)
T PTZ00429 249 SDKES-----AETLLTRVLPRMSHQNPAVVMGAIKVVANLAS 285 (746)
T ss_pred CCcHH-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 22111 12456677777788888888888888777753
No 110
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.26 E-value=0.029 Score=54.04 Aligned_cols=119 Identities=16% Similarity=0.277 Sum_probs=97.3
Q ss_pred HHHHhcCCchhhhcccccCCH------HHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhc----CccHHHHHHHHH
Q 004582 538 SELVASGIIPSIIKFLDTGTR------ESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLE----DPILSSYCIKII 607 (744)
Q Consensus 538 ~~I~~~G~Ip~Lv~lL~s~~~------~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~----~~~l~~~al~~L 607 (744)
..+...||++.|++++.+|+. +....++.++..|..+.-.-...+..-.|..++..+. +.++...|+++|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 345678999999999998873 6778899999999888766777888888888888884 457889999999
Q ss_pred HHhc-CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Q 004582 608 KALC-TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHT 656 (744)
Q Consensus 608 ~nLa-~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~ 656 (744)
.++. +.......+..+=-++.|+..|..+++..|.+|++.+-+|....+
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 9999 655544444436789999999999999999999999999875533
No 111
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.22 E-value=0.0037 Score=65.89 Aligned_cols=53 Identities=15% Similarity=0.306 Sum_probs=42.6
Q ss_pred CCccccccccccCCC--cee--cCCCccccHHHHHHHHccCCCCCCCCCCCCCCCCCcc
Q 004582 262 PEEFKCSISLRLMYD--PVV--IASGKTFERVWIQKWFNAGHTTCPKTHMRLDNVSVTP 316 (744)
Q Consensus 262 p~~f~CPI~~~~m~d--PV~--~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~~~l~p 316 (744)
...|.||||+..|.. +.+ .+|||.|...+|++-- ....||.|++++...+++|
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEE
Confidence 567999999999954 333 3999999999999883 3557999999998776653
No 112
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.46 Score=57.15 Aligned_cols=133 Identities=17% Similarity=0.244 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHhcCC-cchHHHHHh----cCCcHhHHHHhc---CccHHHHHHHHHHHhc-CHHHHHHHHhhCCcHHHHH
Q 004582 560 SRELAIKILCNLSSG-DNIVYHILY----LDCTSKLVRLLE---DPILSSYCIKIIKALC-TSEARAAVAESNPCIDSIA 630 (744)
Q Consensus 560 ~k~~A~~aL~nLs~~-~~n~~~iv~----aG~v~~Lv~lL~---~~~l~~~al~~L~nLa-~~e~~~~i~~~~g~V~~Lv 630 (744)
-...++.||.|+... ++-...+.. -|-++.+..+|. ++.+..-|+.++..+. +.++-..|+. .|.+..|+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~-~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLAT-CNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHh-hhHHHHHH
Confidence 345678899998654 433333321 277788777773 4678999999999999 9999999999 58888888
Q ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHh-hcCCHHHHHHHHHHHHHhhh
Q 004582 631 KLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDIS-VNGNSRGKETAKELIMLLDH 695 (744)
Q Consensus 631 ~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll-~~~s~~~r~~A~~lL~~L~~ 695 (744)
.+|. .-|..|+-++.+|+.|+++. +....+...|++..+.+++ .+.++..|..|+.+|.-|..
T Consensus 1820 ~lLH-S~PS~R~~vL~vLYAL~S~~-~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1820 TLLH-SQPSMRARVLDVLYALSSNG-QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred HHHh-cChHHHHHHHHHHHHHhcCc-HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence 8885 45788999999999998776 5556667777766666655 55667888899999987753
No 113
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.0027 Score=65.93 Aligned_cols=47 Identities=19% Similarity=0.315 Sum_probs=43.2
Q ss_pred ccccccccCCCceecCCCccccHHHHHHHHccCCCCCCCCCCCCCCC
Q 004582 266 KCSISLRLMYDPVVIASGKTFERVWIQKWFNAGHTTCPKTHMRLDNV 312 (744)
Q Consensus 266 ~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~~ 312 (744)
.||||..-|--||.++|+|.||..||+--...+..+||+|++++.+.
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 49999999999999999999999999987777788999999999764
No 114
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.11 E-value=0.0061 Score=52.09 Aligned_cols=50 Identities=22% Similarity=0.327 Sum_probs=37.8
Q ss_pred CCCccccccccccCCC-ceec-CCCccccHHHHHHHHcc--CCCCCCCCCCCCC
Q 004582 261 PPEEFKCSISLRLMYD-PVVI-ASGKTFERVWIQKWFNA--GHTTCPKTHMRLD 310 (744)
Q Consensus 261 ~p~~f~CPI~~~~m~d-PV~~-~~G~ty~r~~I~~w~~~--~~~~cP~t~~~l~ 310 (744)
.+-+-.||.|...=.| |++. .|||.|-..||.+|++. .+.+||.|+++..
T Consensus 29 ~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 29 MPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred cccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 3445556666665555 6555 89999999999999985 4679999999754
No 115
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.29 Score=53.92 Aligned_cols=233 Identities=14% Similarity=0.096 Sum_probs=163.6
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHHhhhcch------h---hHHHhhCCChHHHHHHhccccc--CCCHHHHHHHHHH
Q 004582 420 TDLTSLSKLASRPWGSQCDAVENIKKLLKDNGQ------S---RHLAFLNSYVKPLIKFLKDAHN--LCDAKAQKDGAEV 488 (744)
Q Consensus 420 ~~~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~------~---r~~i~~~G~I~~LV~lL~~~~~--~~d~~~q~~A~~~ 488 (744)
.++.++..|...+.++-...+..|..++..+.. + -..+++.++++.||+-+....+ ........+.+.+
T Consensus 126 ~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~v 205 (536)
T KOG2734|consen 126 AVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLAV 205 (536)
T ss_pred cHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHH
Confidence 345678888888999999999999999854321 1 2356788999999988865321 1223445667777
Q ss_pred HHHHhcCCC-CCcccccccchHHHHHhhcc-----hhHHHHHHHHHHhccC-hhhhHHHHhcCCchhhhcccc---c---
Q 004582 489 LLAILSQSR-DEMPLFHKDEICTFALFLDS-----EIMEEALEIIEVLSHQ-QNYASELVASGIIPSIIKFLD---T--- 555 (744)
Q Consensus 489 L~nLs~~~~-nk~~iv~~Gai~~Lv~lL~s-----~~~e~A~~~L~~Ls~~-~~~k~~I~~~G~Ip~Lv~lL~---s--- 555 (744)
+-|+..-.. --..+++.|.+..|+.-+.. .+...|..+|..+-.+ .+++...+...+|..+++-+. .
T Consensus 206 veNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP 285 (536)
T KOG2734|consen 206 VENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDP 285 (536)
T ss_pred HHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCC
Confidence 777766433 34455677888887775532 2445677777555444 458888888888888887652 1
Q ss_pred --CC-HHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcCcc-HHHHHHHHHHHhc-CH---HHHHHHHhhCCcHH
Q 004582 556 --GT-RESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLEDPI-LSSYCIKIIKALC-TS---EARAAVAESNPCID 627 (744)
Q Consensus 556 --~~-~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~~-l~~~al~~L~nLa-~~---e~~~~i~~~~g~V~ 627 (744)
++ .+.-++-...||.+-..++|+..++...++..+.-+++... ....++.+|-.+. ++ .++..+++ .+++.
T Consensus 286 ~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe-~lGLr 364 (536)
T KOG2734|consen 286 ATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVE-ILGLR 364 (536)
T ss_pred CCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHH-HHhHH
Confidence 22 25788899999999999999999999999988877776643 4567888998888 54 57777888 47777
Q ss_pred HHHHHHc-C--------CC-HHHHHHHHHHHHHHhc
Q 004582 628 SIAKLLE-T--------GT-REEQEHIVDVLLSLCH 653 (744)
Q Consensus 628 ~Lv~lL~-~--------~s-~~~~e~A~~~L~~Lc~ 653 (744)
.+..+.. + ++ ...-|+.+.+|+++-.
T Consensus 365 tiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 365 TIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 7777654 2 22 3456788888888754
No 116
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.05 E-value=0.13 Score=58.91 Aligned_cols=257 Identities=16% Similarity=0.158 Sum_probs=156.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCccc
Q 004582 423 TSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPL 502 (744)
Q Consensus 423 ~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~i 502 (744)
.+.+.+.......|..|...+..+.+++. -....+.+++..|-+.+.+. .+..-++.+..+.-..+.+-. ..
T Consensus 138 ~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~~~~~~~l~~l~~ai~dk---~~~~~re~~~~a~~~~~~~Lg---~~ 209 (569)
T KOG1242|consen 138 LLLELLTSTKIAERAGAAYGLAGLVNGLG--IESLKEFGFLDNLSKAIIDK---KSALNREAALLAFEAAQGNLG---PP 209 (569)
T ss_pred HHHHHhccccHHHHhhhhHHHHHHHcCcH--HhhhhhhhHHHHHHHHhccc---chhhcHHHHHHHHHHHHHhcC---CC
Confidence 34455666778888889999888887542 23455667777777777662 122222222222111111100 11
Q ss_pred ccccchHHHHHhhc------------------------------------------c--hhHHHHHHHHHHhccChhhhH
Q 004582 503 FHKDEICTFALFLD------------------------------------------S--EIMEEALEIIEVLSHQQNYAS 538 (744)
Q Consensus 503 v~~Gai~~Lv~lL~------------------------------------------s--~~~e~A~~~L~~Ls~~~~~k~ 538 (744)
.+.+.++.+-.+|. . .....++..|..++......-
T Consensus 210 ~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qL 289 (569)
T KOG1242|consen 210 FEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQL 289 (569)
T ss_pred CCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHH
Confidence 12222222222221 1 012346666666666555555
Q ss_pred HHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcCcc-HHHHHHHHHHHhc-CHHHH
Q 004582 539 ELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLEDPI-LSSYCIKIIKALC-TSEAR 616 (744)
Q Consensus 539 ~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~~-l~~~al~~L~nLa-~~e~~ 616 (744)
...-...||.|.+.|.+..+++|+.+..+|.++++.-+|.... -.+|.|++-+.++. -...|+..|..-. -.
T Consensus 290 s~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~---~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~--- 363 (569)
T KOG1242|consen 290 SLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQ---KIIPTLLDALADPSCYTPECLDSLGATTFVA--- 363 (569)
T ss_pred HHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHH---HHHHHHHHHhcCcccchHHHHHhhcceeeee---
Confidence 5666889999999999999999999999999999887776622 45788888888876 5566665554433 11
Q ss_pred HHHHhhCCcHHHHHHHHc----CCCHHHHHHHHHHHHHHhcCCHHHHHHH-HhCCcHHHHHHHhhcCCHHHHHHHHHHHH
Q 004582 617 AAVAESNPCIDSIAKLLE----TGTREEQEHIVDVLLSLCHEHTKYCQLA-NTESIIQCVVDISVNGNSRGKETAKELIM 691 (744)
Q Consensus 617 ~~i~~~~g~V~~Lv~lL~----~~s~~~~e~A~~~L~~Lc~~~~~~~~~v-~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~ 691 (744)
.++ +-.+..++.+|. ..+...+..++.+..++|.--++...+. .-.-.+|-|-..+.+..|++|..|+.+|.
T Consensus 364 --~V~-~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~ 440 (569)
T KOG1242|consen 364 --EVD-APSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALG 440 (569)
T ss_pred --eec-chhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHH
Confidence 122 233555566664 3567778999999999996542211221 11225677777777778999999999994
Q ss_pred -Hhhhc
Q 004582 692 -LLDHC 696 (744)
Q Consensus 692 -~L~~~ 696 (744)
++.+.
T Consensus 441 ~l~e~~ 446 (569)
T KOG1242|consen 441 ALLERL 446 (569)
T ss_pred HHHHHH
Confidence 44443
No 117
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.04 E-value=0.026 Score=57.93 Aligned_cols=148 Identities=13% Similarity=0.181 Sum_probs=94.3
Q ss_pred CCchhhhcccccCCHHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcCc--cHHHHHHHHHHHhc-CHHHHHHHH
Q 004582 544 GIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLEDP--ILSSYCIKIIKALC-TSEARAAVA 620 (744)
Q Consensus 544 G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~--~l~~~al~~L~nLa-~~e~~~~i~ 620 (744)
..++.++..+.+....+...|+.+|..|+..-.+.-.-.-...+|.|++.+.++ .+.+.|..+|..+. +-.....+.
T Consensus 53 ~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~ 132 (228)
T PF12348_consen 53 QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL 132 (228)
T ss_dssp ---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH
T ss_pred HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH
Confidence 566778888887778888999999999887655443333456888999988775 46788888888888 322111111
Q ss_pred hhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH----hCCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 004582 621 ESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLAN----TESIIQCVVDISVNGNSRGKETAKELIMLLDHC 696 (744)
Q Consensus 621 ~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~----~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~~~ 696 (744)
++.+...+.+.++.+|..++..|..+....+.....+. -..+++.+...+.++++++|+.|..+++.|...
T Consensus 133 -----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 133 -----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp -----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 34555667788999999999998888755441111111 134788999999999999999999999988643
No 118
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.003 Score=65.43 Aligned_cols=45 Identities=29% Similarity=0.472 Sum_probs=40.1
Q ss_pred cccccccccCCCceecCCCccccHHHHHHHHccCCCCCCCCCCCCC
Q 004582 265 FKCSISLRLMYDPVVIASGKTFERVWIQKWFNAGHTTCPKTHMRLD 310 (744)
Q Consensus 265 f~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~ 310 (744)
|-|-||.+-|.+||++.|||+||..|--+.++. ...|++|++...
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTH 286 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhcccccc-CCcceecccccc
Confidence 889999999999999999999999998888876 468999988653
No 119
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=0.0042 Score=62.50 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=32.2
Q ss_pred CCCCccccccccccCCCceecCCCccccHHHHHHHHc
Q 004582 260 EPPEEFKCSISLRLMYDPVVIASGKTFERVWIQKWFN 296 (744)
Q Consensus 260 ~~p~~f~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~ 296 (744)
.+-+.=+|.+|++.++|||+.+.||.|||+||.+++-
T Consensus 39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 3434448999999999999999999999999999874
No 120
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=95.90 E-value=0.0065 Score=62.01 Aligned_cols=64 Identities=17% Similarity=0.259 Sum_probs=48.4
Q ss_pred CccccccccccCCCceec-CCCccccHHHHHHHHcc-CCCCCCCCCCC----CCCCCCcccHHHHHHHHH
Q 004582 263 EEFKCSISLRLMYDPVVI-ASGKTFERVWIQKWFNA-GHTTCPKTHMR----LDNVSVTPNVAIKELISQ 326 (744)
Q Consensus 263 ~~f~CPI~~~~m~dPV~~-~~G~ty~r~~I~~w~~~-~~~~cP~t~~~----l~~~~l~pn~~l~~~i~~ 326 (744)
-+++|||+......||+. .|||.|+|..|+..+.. -...||+-|-. +....+.+.-.+++-|++
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~~~~~~~~~~l~~d~el~~kIr~ 244 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCENPYYIQPGHLDEDKELQQKIRQ 244 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCCccccccccccCchHHHHHHHHH
Confidence 468999999999999997 79999999999999863 24569996644 234455665556655544
No 121
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=95.87 E-value=0.024 Score=63.30 Aligned_cols=153 Identities=10% Similarity=0.092 Sum_probs=108.6
Q ss_pred HHHHHHHhccChhh-hHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCCcchH--HHHHhcCCcHhHHHHhcCc--
Q 004582 523 ALEIIEVLSHQQNY-ASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIV--YHILYLDCTSKLVRLLEDP-- 597 (744)
Q Consensus 523 A~~~L~~Ls~~~~~-k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~--~~iv~aG~v~~Lv~lL~~~-- 597 (744)
+...+.|+...-.+ +..+.+.|.|..|++++.+.+...++++.|.|+++.-+..+- -+....-++..++++..|+
T Consensus 451 ~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~ 530 (743)
T COG5369 451 DTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCF 530 (743)
T ss_pred chhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCccc
Confidence 44445555544444 666668899999999999988899999999999998876654 3457778899999999887
Q ss_pred cHHHHHHHHHHHhc-C-HHH---HHHHHh---hCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCC-cH
Q 004582 598 ILSSYCIKIIKALC-T-SEA---RAAVAE---SNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTES-II 668 (744)
Q Consensus 598 ~l~~~al~~L~nLa-~-~e~---~~~i~~---~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G-~i 668 (744)
.+...++.+|+|+. + ..| +.-... ..-....|++.++...|-..+..+.+|.+++..++.....+.+.. .+
T Consensus 531 ~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L 610 (743)
T COG5369 531 KVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDML 610 (743)
T ss_pred ccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHH
Confidence 57899999999999 2 222 221111 012345566777777888888889999999888777666655443 44
Q ss_pred HHHHHHh
Q 004582 669 QCVVDIS 675 (744)
Q Consensus 669 ~~Lv~Ll 675 (744)
-.+.+++
T Consensus 611 ~~i~eil 617 (743)
T COG5369 611 DSIFEIL 617 (743)
T ss_pred HHHHHHH
Confidence 4444444
No 122
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.86 E-value=0.073 Score=51.38 Aligned_cols=118 Identities=16% Similarity=0.197 Sum_probs=96.2
Q ss_pred HHHHhcCCcHhHHHHhcCc--------cHHHHHHHHHHHhc-CHHHHHHHHhhCCcHHHHHHHHcCC--CHHHHHHHHHH
Q 004582 579 YHILYLDCTSKLVRLLEDP--------ILSSYCIKIIKALC-TSEARAAVAESNPCIDSIAKLLETG--TREEQEHIVDV 647 (744)
Q Consensus 579 ~~iv~aG~v~~Lv~lL~~~--------~l~~~al~~L~nLa-~~e~~~~i~~~~g~V~~Lv~lL~~~--s~~~~e~A~~~ 647 (744)
..+++.||+..|+.++.++ ++...++.++..|- +.-.--.... ..+|..++.++... ++.+.+.|+++
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~-~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLS-DSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhcc-HHHHHHHHHHHccccccchHHHHHHHH
Confidence 4677889999999999653 35567888888887 5443445566 47889999998753 68899999999
Q ss_pred HHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHh-hhcC
Q 004582 648 LLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLL-DHCK 697 (744)
Q Consensus 648 L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L-~~~~ 697 (744)
|.++..++......+.++=-++.|+..++..+++++-+|..++..| .+.+
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 9999999988788888888999999999999999999999999655 3443
No 123
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.0037 Score=72.87 Aligned_cols=47 Identities=23% Similarity=0.543 Sum_probs=42.2
Q ss_pred CCCccccccccccCCC-----ceecCCCccccHHHHHHHHccCCCCCCCCCCC
Q 004582 261 PPEEFKCSISLRLMYD-----PVVIASGKTFERVWIQKWFNAGHTTCPKTHMR 308 (744)
Q Consensus 261 ~p~~f~CPI~~~~m~d-----PV~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~ 308 (744)
...+-.|+||.+.|.. |=.++|||.|...|+.+|++. ..+||.|+..
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~ 339 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTV 339 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhh
Confidence 3457799999999999 788999999999999999987 7799999873
No 124
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.77 E-value=0.055 Score=48.38 Aligned_cols=66 Identities=17% Similarity=0.204 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhc--CHHHHHHHHhhCCcHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhC
Q 004582 599 LSSYCIKIIKALC--TSEARAAVAESNPCIDSIAKLLE--TGTREEQEHIVDVLLSLCHEHTKYCQLANTE 665 (744)
Q Consensus 599 l~~~al~~L~nLa--~~e~~~~i~~~~g~V~~Lv~lL~--~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~ 665 (744)
++...+.+|+||+ ++..+..+.+ .|+|+.++..-. ..+|-.+|+|+.++.+||.++.++...+.+-
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~-~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRE-LGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4567899999999 8999999999 577999998763 5689999999999999999998877766543
No 125
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.75 E-value=0.0055 Score=59.60 Aligned_cols=44 Identities=23% Similarity=0.408 Sum_probs=38.7
Q ss_pred cccccccccCCCceecCCCccccHHHHHHHHccCCCCCCCCCCCC
Q 004582 265 FKCSISLRLMYDPVVIASGKTFERVWIQKWFNAGHTTCPKTHMRL 309 (744)
Q Consensus 265 f~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l 309 (744)
|.|-||.+=++.||++.|||.||-.|--+-++.| .+|-+|+...
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg-~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQKG-DECGVCGKAT 240 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhccC-Ccceecchhh
Confidence 9999999999999999999999999987777664 6899998653
No 126
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.012 Score=60.36 Aligned_cols=49 Identities=18% Similarity=0.231 Sum_probs=41.4
Q ss_pred CCccccccccccCCCceecC-CCccccHHHHHHHHc-cCCCCCCCCCCCCC
Q 004582 262 PEEFKCSISLRLMYDPVVIA-SGKTFERVWIQKWFN-AGHTTCPKTHMRLD 310 (744)
Q Consensus 262 p~~f~CPI~~~~m~dPV~~~-~G~ty~r~~I~~w~~-~~~~~cP~t~~~l~ 310 (744)
-.+-.||+|++--.-|.++. |||.||.-||..-+. ....+||.|+.+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 46778999999999999985 999999999998754 34679999997654
No 127
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.65 E-value=0.15 Score=59.64 Aligned_cols=257 Identities=14% Similarity=0.091 Sum_probs=143.0
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCC-cc
Q 004582 423 TSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDE-MP 501 (744)
Q Consensus 423 ~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk-~~ 501 (744)
.+...+.+.++.+|..|+..+.++-..+ .......|+++.|..++.+ .++.+..+|+.+|..+.....+. ..
T Consensus 125 Pl~~~l~d~~~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~D----~~p~VVAnAlaaL~eI~e~~~~~~~~ 197 (734)
T KOG1061|consen 125 PLLKCLKDDDPYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLSD----SNPMVVANALAALSEIHESHPSVNLL 197 (734)
T ss_pred HHHHhccCCChhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhcC----CCchHHHHHHHHHHHHHHhCCCCCcc
Confidence 4566678889999999988888875443 4466778999999999997 78999999999999997766541 11
Q ss_pred cccccchHHHHHhhcchhHHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCCcchHHHH
Q 004582 502 LFHKDEICTFALFLDSEIMEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIVYHI 581 (744)
Q Consensus 502 iv~~Gai~~Lv~lL~s~~~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~i 581 (744)
....-.+..++..|..-+.-.-+.+|-.|+..-.... .-....+..+...|.+.+..+.-.+.+++.++.....+....
T Consensus 198 ~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~ 276 (734)
T KOG1061|consen 198 ELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNEL 276 (734)
T ss_pred cccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHH
Confidence 1112233333333332221122333333333211111 000122334444555555555556666666655554443333
Q ss_pred HhcCCcHhHHHHhcCcc-------------------------------------HHHHHHHHHHHhcCHHHHHHHHhhCC
Q 004582 582 LYLDCTSKLVRLLEDPI-------------------------------------LSSYCIKIIKALCTSEARAAVAESNP 624 (744)
Q Consensus 582 v~aG~v~~Lv~lL~~~~-------------------------------------l~~~al~~L~nLa~~e~~~~i~~~~g 624 (744)
+-...-++|+.++..+. ++..=+.++..|++.++...+
T Consensus 277 ~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qv----- 351 (734)
T KOG1061|consen 277 LFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQV----- 351 (734)
T ss_pred HHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHH-----
Confidence 33445555555554332 223333344444433332222
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHh-hhcCCC
Q 004582 625 CIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLL-DHCKED 699 (744)
Q Consensus 625 ~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L-~~~~~~ 699 (744)
+..|.+.-..-+...-..+++++..++..-.+ .++.+..|++++...-+-+...+...++.+ +..++.
T Consensus 352 -l~El~eYatevD~~fvrkaIraig~~aik~e~------~~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~ 420 (734)
T KOG1061|consen 352 -LAELKEYATEVDVDFVRKAVRAIGRLAIKAEQ------SNDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK 420 (734)
T ss_pred -HHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhh------hhhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc
Confidence 22222333344666677788887777644322 177888888888877776666666666544 454444
No 128
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.0088 Score=62.81 Aligned_cols=54 Identities=26% Similarity=0.421 Sum_probs=45.2
Q ss_pred CCCCCCCCccccccccccCCCceecC-CCccccHHHHHHHHccCCCCCCCCCCCCC
Q 004582 256 SGVLEPPEEFKCSISLRLMYDPVVIA-SGKTFERVWIQKWFNAGHTTCPKTHMRLD 310 (744)
Q Consensus 256 ~~~~~~p~~f~CPI~~~~m~dPV~~~-~G~ty~r~~I~~w~~~~~~~cP~t~~~l~ 310 (744)
..+..+|+.=.||+|++=-.+|-++. +|..||-.||-.+.. .+..||+|+-|..
T Consensus 292 e~e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 292 ESELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPAS 346 (357)
T ss_pred ccccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcch
Confidence 34456677889999999888887775 599999999999998 4789999998764
No 129
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.52 E-value=0.0059 Score=67.36 Aligned_cols=49 Identities=22% Similarity=0.434 Sum_probs=42.3
Q ss_pred CccccccccccCCCceecCCCccccHHHHHHHHc----cCCCCCCCCCCCCCC
Q 004582 263 EEFKCSISLRLMYDPVVIASGKTFERVWIQKWFN----AGHTTCPKTHMRLDN 311 (744)
Q Consensus 263 ~~f~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~----~~~~~cP~t~~~l~~ 311 (744)
.+..|-+|.+.-.||+..+|.|+|||-||.+|.. ..+-|||.|..+|.-
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 4578999999999999999999999999998864 235789999887754
No 130
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.46 E-value=0.22 Score=56.29 Aligned_cols=222 Identities=13% Similarity=0.140 Sum_probs=150.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHH-hhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCc
Q 004582 422 LTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLA-FLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEM 500 (744)
Q Consensus 422 ~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i-~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~ 500 (744)
..++..|.+.+.++|..+=-.|..+..+ -.+.... --...++.++.-+.+ .++.+|..|++.+..+..-..+..
T Consensus 211 dGLf~~LsD~s~eVr~~~~t~l~~fL~e-I~s~P~s~d~~~~i~vlv~~l~s----s~~~iq~~al~Wi~efV~i~g~~~ 285 (675)
T KOG0212|consen 211 DGLFNMLSDSSDEVRTLTDTLLSEFLAE-IRSSPSSMDYDDMINVLVPHLQS----SEPEIQLKALTWIQEFVKIPGRDL 285 (675)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHH-HhcCccccCcccchhhccccccC----CcHHHHHHHHHHHHHHhcCCCcch
Confidence 4677888888888886544444443322 1111111 224567778888877 789999999999999988666655
Q ss_pred ccccccchHHHHHhhcch-h---HHHHHH---HHHHhccChhhhHHHHhc-CCchhhhcccccCCHHHHHHHHHHHHHhc
Q 004582 501 PLFHKDEICTFALFLDSE-I---MEEALE---IIEVLSHQQNYASELVAS-GIIPSIIKFLDTGTRESRELAIKILCNLS 572 (744)
Q Consensus 501 ~iv~~Gai~~Lv~lL~s~-~---~e~A~~---~L~~Ls~~~~~k~~I~~~-G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs 572 (744)
...-.|.+..++..+.+. . .+.|.. -|..+...+..+..| +- ..+..|.+.+.+...+.|..++.-+..|-
T Consensus 286 l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~i-d~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~ 364 (675)
T KOG0212|consen 286 LLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEI-DYGSIIEVLTKYLSDDREETRIAVLNWIILLY 364 (675)
T ss_pred hhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhcccc-chHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 555667777777776432 1 222221 133333333333333 43 36777888888899999999999999988
Q ss_pred CCcchHHHHHhcCCcHhHHHHhcCc--cHHHHHHHHHHHhc-CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHH
Q 004582 573 SGDNIVYHILYLDCTSKLVRLLEDP--ILSSYCIKIIKALC-TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLL 649 (744)
Q Consensus 573 ~~~~n~~~iv~aG~v~~Lv~lL~~~--~l~~~al~~L~nLa-~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~ 649 (744)
....|..........+.|+.-|.|+ .++..++.+|+++| +++...- . .++..|+++......-....+.-++.
T Consensus 365 ~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~-~---~fl~sLL~~f~e~~~~l~~Rg~lIIR 440 (675)
T KOG0212|consen 365 HKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL-R---KFLLSLLEMFKEDTKLLEVRGNLIIR 440 (675)
T ss_pred hhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH-H---HHHHHHHHHHhhhhHHHHhhhhHHHH
Confidence 8877777667778999999999764 68999999999999 6554421 1 24566666666666666777888888
Q ss_pred HHhc
Q 004582 650 SLCH 653 (744)
Q Consensus 650 ~Lc~ 653 (744)
.||.
T Consensus 441 qlC~ 444 (675)
T KOG0212|consen 441 QLCL 444 (675)
T ss_pred HHHH
Confidence 8884
No 131
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.43 E-value=0.87 Score=55.08 Aligned_cols=226 Identities=15% Similarity=0.093 Sum_probs=158.2
Q ss_pred ChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCC-CcccccccchHHHHHhhcchhHHH--HHHHH--HHhccChhh
Q 004582 462 YVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRD-EMPLFHKDEICTFALFLDSEIMEE--ALEII--EVLSHQQNY 536 (744)
Q Consensus 462 ~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~n-k~~iv~~Gai~~Lv~lL~s~~~e~--A~~~L--~~Ls~~~~~ 536 (744)
-+|.++++|=+ ..-+..|+.+|..+..-..- ......-|.+|-.+++|.+...|. .+..+ .-|+.++..
T Consensus 473 QLPiVLQVLLS------QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SC 546 (1387)
T KOG1517|consen 473 QLPIVLQVLLS------QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSC 546 (1387)
T ss_pred hcchHHHHHHH------HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchh
Confidence 35666666644 22334555555555554433 333446799999999999887653 33333 457888888
Q ss_pred hHHHHhcCCchhhhccccc-C--CHHHHHHHHHHHHHhcCC-cchHHHHHhcCCcHhHHHHhcCc--c-HHHHHHHHHHH
Q 004582 537 ASELVASGIIPSIIKFLDT-G--TRESRELAIKILCNLSSG-DNIVYHILYLDCTSKLVRLLEDP--I-LSSYCIKIIKA 609 (744)
Q Consensus 537 k~~I~~~G~Ip~Lv~lL~s-~--~~~~k~~A~~aL~nLs~~-~~n~~~iv~aG~v~~Lv~lL~~~--~-l~~~al~~L~n 609 (744)
+..++..++-.-.+.+|.. + +.+-|..|+-+|..+..+ +-......+.+.|..-+..|.++ . ++.=++-+|..
T Consensus 547 Q~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~ 626 (1387)
T KOG1517|consen 547 QADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGR 626 (1387)
T ss_pred HHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 9999988888888888876 2 347888899999988776 33455667888999888899774 2 45566777888
Q ss_pred hc--CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC----HHHHHHH-----------HhCCcH----
Q 004582 610 LC--TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEH----TKYCQLA-----------NTESII---- 668 (744)
Q Consensus 610 La--~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~----~~~~~~v-----------~~~G~i---- 668 (744)
|= .++.|-.=++ .++...|+.+|+...|++|..|+.+|..+-.+. ++....+ .-+..+
T Consensus 627 LW~d~~~Arw~G~r-~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~ 705 (1387)
T KOG1517|consen 627 LWEDYDEARWSGRR-DNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGL 705 (1387)
T ss_pred Hhhhcchhhhcccc-ccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhH
Confidence 87 5666665566 689999999999999999999999999987652 2221211 111222
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhh
Q 004582 669 QCVVDISVNGNSRGKETAKELIMLLD 694 (744)
Q Consensus 669 ~~Lv~Ll~~~s~~~r~~A~~lL~~L~ 694 (744)
-.++.+...+++-++..-+..|..+.
T Consensus 706 ~~ll~~vsdgsplvr~ev~v~ls~~~ 731 (1387)
T KOG1517|consen 706 MSLLALVSDGSPLVRTEVVVALSHFV 731 (1387)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHH
Confidence 37888889999999877776776553
No 132
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=0.011 Score=59.54 Aligned_cols=53 Identities=13% Similarity=0.291 Sum_probs=46.5
Q ss_pred CccccccccccCCCce----ecCCCccccHHHHHHHHccCCCCCCCCCCCCCCCCCcc
Q 004582 263 EEFKCSISLRLMYDPV----VIASGKTFERVWIQKWFNAGHTTCPKTHMRLDNVSVTP 316 (744)
Q Consensus 263 ~~f~CPI~~~~m~dPV----~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~~~l~p 316 (744)
..|.||+|.+.+.+-+ +-+|||.++..|.++.+. +...||+|+.++...++++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcccceEe
Confidence 5699999999988854 449999999999999886 4779999999999988887
No 133
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.38 E-value=0.38 Score=56.61 Aligned_cols=233 Identities=11% Similarity=0.068 Sum_probs=156.3
Q ss_pred chhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcccccccchHHHHHhhcchh----HHHHHHH
Q 004582 451 GQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPLFHKDEICTFALFLDSEI----MEEALEI 526 (744)
Q Consensus 451 ~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~iv~~Gai~~Lv~lL~s~~----~e~A~~~ 526 (744)
...|...++.|+.+.|+++..- ..+.+..++..+|..-.....++ ....++++...+.+.. .-.++.+
T Consensus 494 K~~~~~~Ik~~~~~aLlrl~~~----q~e~akl~~~~aL~~~i~f~~~~----~~~v~~~~~s~~~~d~~~~en~E~L~a 565 (748)
T KOG4151|consen 494 KYERAKKIKPGGYEALLRLGQQ----QFEEAKLKWYHALAGKIDFPGER----SYEVVKPLDSALHNDEKGLENFEALEA 565 (748)
T ss_pred HHhcCccccccHHHHHHHHHHH----hchHHHHHHHHHHhhhcCCCCCc----hhhhhhhhcchhhhhHHHHHHHHHHHH
Confidence 4456677889999999999876 56777777777777211111111 1235555555554332 1368889
Q ss_pred HHHhccChhh-hHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCCcchHHHH-Hh-cCCcHhHHHHhcC--ccHHH
Q 004582 527 IEVLSHQQNY-ASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIVYHI-LY-LDCTSKLVRLLED--PILSS 601 (744)
Q Consensus 527 L~~Ls~~~~~-k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~i-v~-aG~v~~Lv~lL~~--~~l~~ 601 (744)
+.||+..++. |..|...-+++.+-..+...++-.+..++..+.||...+.--.+. ++ ...++.....+.. .....
T Consensus 566 ltnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~l 645 (748)
T KOG4151|consen 566 LTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFEL 645 (748)
T ss_pred hhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhh
Confidence 9999988766 777877667777666777788899999999999999887644433 44 3455555554432 34556
Q ss_pred HHHHHHHHhc-CHHHHHH-HHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCC
Q 004582 602 YCIKIIKALC-TSEARAA-VAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGN 679 (744)
Q Consensus 602 ~al~~L~nLa-~~e~~~~-i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s 679 (744)
.+++++..++ ..++.-. +......-..++.++.+++..+|...+.+.+++...+.+....+...-.++.+..+....-
T Consensus 646 A~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~ 725 (748)
T KOG4151|consen 646 AGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNR 725 (748)
T ss_pred hccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 6666777555 3333333 4443456788999999999999999999998887666666677777777777777666543
Q ss_pred HHHHHHHHHHHH
Q 004582 680 SRGKETAKELIM 691 (744)
Q Consensus 680 ~~~r~~A~~lL~ 691 (744)
...++.|..-|.
T Consensus 726 a~~~~~~~~~l~ 737 (748)
T KOG4151|consen 726 APKREDAAPCLS 737 (748)
T ss_pred hhhhhhhhhHHH
Confidence 444455544443
No 134
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.29 E-value=0.095 Score=60.11 Aligned_cols=258 Identities=10% Similarity=0.043 Sum_probs=160.2
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhh----CCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcC
Q 004582 420 TDLTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFL----NSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQ 495 (744)
Q Consensus 420 ~~~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~----~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~ 495 (744)
..+.+...|.+.+...+..|..+|..+++++++--..=+. .-.+|.++++.++ .+++++..|+..+-.+
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h----~spkiRs~A~~cvNq~--- 201 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKH----PSPKIRSHAVGCVNQF--- 201 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhC----CChhHHHHHHhhhhhe---
Confidence 4566777788888888999999999999987764332111 2468889999988 7899999988775333
Q ss_pred CCCCcccccccc----hHHHHHhh----cc---hhHHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHH
Q 004582 496 SRDEMPLFHKDE----ICTFALFL----DS---EIMEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELA 564 (744)
Q Consensus 496 ~~nk~~iv~~Ga----i~~Lv~lL----~s---~~~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A 564 (744)
.++...+ +..+++.| +. ++..+.+.+|..|......|-.=-=.+.+.-+++.-+..++++.-.|
T Consensus 202 -----i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEA 276 (885)
T KOG2023|consen 202 -----IIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEA 276 (885)
T ss_pred -----eecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHH
Confidence 2222221 22222222 11 23455666665444322222111114566666777777888888899
Q ss_pred HHHHHHhcCCcchHHHHHh--cCCcHhHHHHh----------c-C-c---------------------------------
Q 004582 565 IKILCNLSSGDNIVYHILY--LDCTSKLVRLL----------E-D-P--------------------------------- 597 (744)
Q Consensus 565 ~~aL~nLs~~~~n~~~iv~--aG~v~~Lv~lL----------~-~-~--------------------------------- 597 (744)
+.....++..+--+..+.. ...||.|+.=+ . + +
T Consensus 277 CEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdd 356 (885)
T KOG2023|consen 277 CEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDD 356 (885)
T ss_pred HHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccc
Confidence 9999999988843333332 26677776543 1 0 0
Q ss_pred -------------cHHHHHHHHHHHhcCHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh
Q 004582 598 -------------ILSSYCIKIIKALCTSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANT 664 (744)
Q Consensus 598 -------------~l~~~al~~L~nLa~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~ 664 (744)
++++.++++|-.|++- -+..+.. -.+|.|=+.|.+..-.+||.++-+|.+++-+.-. -+..
T Consensus 357 dDe~DDdD~~~dWNLRkCSAAaLDVLanv-f~~elL~--~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~---g~~p 430 (885)
T KOG2023|consen 357 DDEDDDDDAFSDWNLRKCSAAALDVLANV-FGDELLP--ILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQ---GFVP 430 (885)
T ss_pred ccccccccccccccHhhccHHHHHHHHHh-hHHHHHH--HHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhh---hccc
Confidence 0344455555555511 1112222 2344555555567778999999999999844321 1221
Q ss_pred C--CcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 004582 665 E--SIIQCVVDISVNGNSRGKETAKELIMLLDH 695 (744)
Q Consensus 665 ~--G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~~ 695 (744)
. -.+|.|+.++.+..+-+|..++|.|..++.
T Consensus 431 ~LpeLip~l~~~L~DKkplVRsITCWTLsRys~ 463 (885)
T KOG2023|consen 431 HLPELIPFLLSLLDDKKPLVRSITCWTLSRYSK 463 (885)
T ss_pred chHHHHHHHHHHhccCccceeeeeeeeHhhhhh
Confidence 1 268999999999999999999999987764
No 135
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.22 E-value=0.22 Score=59.87 Aligned_cols=155 Identities=11% Similarity=0.093 Sum_probs=127.2
Q ss_pred hcCCchhhhcccccCCHHHHHHHHHHHHH-hcCCcchHHHHHhcCCcHhHHHHhcC-c----cHHHHHHHHHHHhc--CH
Q 004582 542 ASGIIPSIIKFLDTGTRESRELAIKILCN-LSSGDNIVYHILYLDCTSKLVRLLED-P----ILSSYCIKIIKALC--TS 613 (744)
Q Consensus 542 ~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~n-Ls~~~~n~~~iv~aG~v~~Lv~lL~~-~----~l~~~al~~L~nLa--~~ 613 (744)
.-|..|-++++|++...+.|-.-+-+=.. |+.++.-...+++.++-...+..|.+ + +-+.-|+-+|+.++ .+
T Consensus 510 sVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~ 589 (1387)
T KOG1517|consen 510 SVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFK 589 (1387)
T ss_pred ccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccc
Confidence 57999999999999988888654443333 56666667788999888888888866 2 44566777899999 67
Q ss_pred HHHHHHHhhCCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 004582 614 EARAAVAESNPCIDSIAKLLETG-TREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIML 692 (744)
Q Consensus 614 e~~~~i~~~~g~V~~Lv~lL~~~-s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~ 692 (744)
-|..+..+ .+.|..-++.|..+ .+-.++.++-+|..|..+....+=.-.+.++...|+.++.+..+++|..|..+|-.
T Consensus 590 lGQ~acl~-~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgt 668 (1387)
T KOG1517|consen 590 LGQKACLN-GNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGT 668 (1387)
T ss_pred hhHHHhcc-ccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 88888888 79999999999886 68999999999999998876665666788899999999999999999999999987
Q ss_pred hhhcC
Q 004582 693 LDHCK 697 (744)
Q Consensus 693 L~~~~ 697 (744)
|-+..
T Consensus 669 fl~~~ 673 (1387)
T KOG1517|consen 669 FLSNG 673 (1387)
T ss_pred Hhccc
Confidence 76543
No 136
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.016 Score=62.42 Aligned_cols=46 Identities=20% Similarity=0.399 Sum_probs=39.5
Q ss_pred cccccccccCCCc---eecCCCccccHHHHHHHHccCCCCCCCCCCCCC
Q 004582 265 FKCSISLRLMYDP---VVIASGKTFERVWIQKWFNAGHTTCPKTHMRLD 310 (744)
Q Consensus 265 f~CPI~~~~m~dP---V~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~ 310 (744)
+.|-||+|-+++= ++++|+|.|-..||-.|+......||+|++...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 7999999988753 567999999999999999887778999988543
No 137
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.84 E-value=1.3 Score=52.00 Aligned_cols=261 Identities=10% Similarity=0.078 Sum_probs=156.7
Q ss_pred HHHhhcCCCH-HHHHHHHHHHHHHhhhcchhhHHHh-hCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhc-------
Q 004582 424 SLSKLASRPW-GSQCDAVENIKKLLKDNGQSRHLAF-LNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILS------- 494 (744)
Q Consensus 424 ll~~L~s~~~-e~q~~Al~~Lr~Lak~~~~~r~~i~-~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~------- 494 (744)
++......+. .++..++++|.-++.+=+.- .... ...++-.++.-.+. ..++..++-+|+.+|+|-..
T Consensus 134 lv~nv~~~~~~~~k~~slealGyice~i~pe-vl~~~sN~iLtaIv~gmrk--~e~s~~vRLaa~~aL~nsLef~~~nF~ 210 (859)
T KOG1241|consen 134 LVSNVGEEQASMVKESSLEALGYICEDIDPE-VLEQQSNDILTAIVQGMRK--EETSAAVRLAALNALYNSLEFTKANFN 210 (859)
T ss_pred HHHhcccccchHHHHHHHHHHHHHHccCCHH-HHHHHHhHHHHHHHhhccc--cCCchhHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444444 47888999999998753222 2222 24455566654443 24678899999999998743
Q ss_pred CCCCCcccccccchHHHHHhhcch---hHHHHHHHHHHhcc-ChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHH
Q 004582 495 QSRDEMPLFHKDEICTFALFLDSE---IMEEALEIIEVLSH-QQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCN 570 (744)
Q Consensus 495 ~~~nk~~iv~~Gai~~Lv~lL~s~---~~e~A~~~L~~Ls~-~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~n 570 (744)
++.+|.-+++ ...+.-.++ +...|..+|-.+.. ..+.-..-+.....+.-+.-+++.++++.-.|+..=.+
T Consensus 211 ~E~ern~iMq-----vvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWst 285 (859)
T KOG1241|consen 211 NEMERNYIMQ-----VVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWST 285 (859)
T ss_pred cHhhhceeee-----eeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 2223322221 111111222 23345555533332 22333333344445555666778888888777776665
Q ss_pred hcCCc-----------------chHHHHHh--cCCcHhHHHHhcC--c-------cHHHHHHHHHHHhc-CHHHHHHHHh
Q 004582 571 LSSGD-----------------NIVYHILY--LDCTSKLVRLLED--P-------ILSSYCIKIIKALC-TSEARAAVAE 621 (744)
Q Consensus 571 Ls~~~-----------------~n~~~iv~--aG~v~~Lv~lL~~--~-------~l~~~al~~L~nLa-~~e~~~~i~~ 621 (744)
++... .++..... .+++|.|+++|.. + +....|-.+|..++ +- ...|+.
T Consensus 286 iceEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~--~D~Iv~ 363 (859)
T KOG1241|consen 286 ICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV--GDDIVP 363 (859)
T ss_pred HHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh--cccchh
Confidence 55311 12222222 2788889998832 1 24555555666665 21 122333
Q ss_pred hCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 004582 622 SNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLDHC 696 (744)
Q Consensus 622 ~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~~~ 696 (744)
-++|-+=+-+++.+-+.++.|+.++.++-.+....+..-+..+++|.++.++.+.+--+++.|++.|-.+.+.
T Consensus 364 --~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~ 436 (859)
T KOG1241|consen 364 --HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADF 436 (859)
T ss_pred --hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhh
Confidence 3344444456678899999999999998777666667777889999999999999999999999998776653
No 138
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=94.83 E-value=0.09 Score=45.02 Aligned_cols=83 Identities=17% Similarity=0.261 Sum_probs=63.2
Q ss_pred cHhHHHHh-cCc--cHHHHHHHHHHHhcCHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 004582 587 TSKLVRLL-EDP--ILSSYCIKIIKALCTSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLAN 663 (744)
Q Consensus 587 v~~Lv~lL-~~~--~l~~~al~~L~nLa~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~ 663 (744)
||.|++.| .++ .++..++.+|..+..+ .+++.|++++.+.++.+|..|+.+|..+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDP----------EAIPALIELLKDEDPMVRRAAARALGRIG----------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHH----------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCH----------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------
Confidence 57889988 543 5778888888866411 34899999999999999999999988772
Q ss_pred hCCcHHHHHHHhhcCC-HHHHHHHHHHH
Q 004582 664 TESIIQCVVDISVNGN-SRGKETAKELI 690 (744)
Q Consensus 664 ~~G~i~~Lv~Ll~~~s-~~~r~~A~~lL 690 (744)
...+++.|.+++.+.+ ..+|..|...|
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 2337899999888765 45688888776
No 139
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=94.79 E-value=0.071 Score=45.66 Aligned_cols=83 Identities=23% Similarity=0.305 Sum_probs=62.4
Q ss_pred hHHHHHHh-cccccCCCHHHHHHHHHHHHHHhcCCCCCcccccccchHHHHHhhcchh---HHHHHHHHHHhccChhhhH
Q 004582 463 VKPLIKFL-KDAHNLCDAKAQKDGAEVLLAILSQSRDEMPLFHKDEICTFALFLDSEI---MEEALEIIEVLSHQQNYAS 538 (744)
Q Consensus 463 I~~LV~lL-~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~iv~~Gai~~Lv~lL~s~~---~e~A~~~L~~Ls~~~~~k~ 538 (744)
||.|++.| ++ .++.++..++.+|..+ -...+++.|+.+++++. ...|+.+|..+
T Consensus 1 i~~L~~~l~~~----~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i-------- 58 (88)
T PF13646_consen 1 IPALLQLLQND----PDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRI-------- 58 (88)
T ss_dssp HHHHHHHHHTS----SSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCC--------
T ss_pred CHHHHHHHhcC----CCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh--------
Confidence 68899999 55 7999999999998833 23468999999997654 35677777654
Q ss_pred HHHhcCCchhhhcccccCC-HHHHHHHHHHHH
Q 004582 539 ELVASGIIPSIIKFLDTGT-RESRELAIKILC 569 (744)
Q Consensus 539 ~I~~~G~Ip~Lv~lL~s~~-~~~k~~A~~aL~ 569 (744)
+...+++.|.+++.+.+ ..++..|+.+|.
T Consensus 59 --~~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 59 --GDPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 34558999999998754 456888888873
No 140
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.71 E-value=1.8 Score=50.66 Aligned_cols=246 Identities=13% Similarity=0.195 Sum_probs=128.6
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCC
Q 004582 420 TDLTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDE 499 (744)
Q Consensus 420 ~~~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk 499 (744)
.+|++..+|.++++.++..|+..|+.||+.|++|... .-|.+.++|-.. .|-=+...-+.+..+|+.-+..
T Consensus 182 ~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~-----LAP~ffkllttS---sNNWmLIKiiKLF~aLtplEPR- 252 (877)
T KOG1059|consen 182 CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ-----LAPLFYKLLVTS---SNNWVLIKLLKLFAALTPLEPR- 252 (877)
T ss_pred hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc-----ccHHHHHHHhcc---CCCeehHHHHHHHhhccccCch-
Confidence 4556666666666666666666666666666665432 234455555432 1211222222333333221110
Q ss_pred cccccccchHHHHHhhcchhH----HHHHHHH--HHhccC-hhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhc
Q 004582 500 MPLFHKDEICTFALFLDSEIM----EEALEII--EVLSHQ-QNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLS 572 (744)
Q Consensus 500 ~~iv~~Gai~~Lv~lL~s~~~----e~A~~~L--~~Ls~~-~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs 572 (744)
.....+++|.+++.+.+. -++..++ .+++.. .++-..| .=++..|-.++.+.+...|-.++-|+..+.
T Consensus 253 ---LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ 327 (877)
T KOG1059|consen 253 ---LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKIL 327 (877)
T ss_pred ---hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHh
Confidence 122355666666654321 1222222 122222 1222222 113555666677778888888888888877
Q ss_pred CCcchHHHHHhcCCcHhHHHHhcC--ccHHHHHHHHHHHhcCHHHHHHHHhhCCcHHHHHHHHc-CCCHHHHHHHHHHHH
Q 004582 573 SGDNIVYHILYLDCTSKLVRLLED--PILSSYCIKIIKALCTSEARAAVAESNPCIDSIAKLLE-TGTREEQEHIVDVLL 649 (744)
Q Consensus 573 ~~~~n~~~iv~aG~v~~Lv~lL~~--~~l~~~al~~L~nLa~~e~~~~i~~~~g~V~~Lv~lL~-~~s~~~~e~A~~~L~ 649 (744)
..+. ..|++ --..+++.|.| ++++-.|+..|.-+.+.+|-.+|+. .|+..+. .....-+..-+.-+.
T Consensus 328 ktHp---~~Vqa-~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk------~LM~~~~~ae~t~yrdell~~II 397 (877)
T KOG1059|consen 328 KTHP---KAVQA-HKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVK------TLMKHVEKAEGTNYRDELLTRII 397 (877)
T ss_pred hhCH---HHHHH-hHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHH------HHHHHHHhccchhHHHHHHHHHH
Confidence 5543 22221 11344666754 6789999999999998888777766 3444443 233356667777777
Q ss_pred HHhcCCHHHHHHHHhCC-cHHHHHHHhh-cCCHHHHHHHHHHHH
Q 004582 650 SLCHEHTKYCQLANTES-IIQCVVDISV-NGNSRGKETAKELIM 691 (744)
Q Consensus 650 ~Lc~~~~~~~~~v~~~G-~i~~Lv~Ll~-~~s~~~r~~A~~lL~ 691 (744)
.+|+.+.- +.+.+.- -+..|++|.. .|+..+..-|..++-
T Consensus 398 ~iCS~snY--~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~D 439 (877)
T KOG1059|consen 398 SICSQSNY--QYITDFEWYLSVLVELARLEGTRHGSLIAEQIID 439 (877)
T ss_pred HHhhhhhh--hhhhhHHHHHHHHHHHHhccccchhhHHHHHHHH
Confidence 88876532 2222222 4566666654 334444444444443
No 141
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=94.71 E-value=1.5 Score=47.78 Aligned_cols=158 Identities=17% Similarity=0.163 Sum_probs=105.1
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCC
Q 004582 420 TDLTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDE 499 (744)
Q Consensus 420 ~~~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk 499 (744)
.++.+...|.+.++.+|..|+..|..+- ....++.|+.+|..+ .+..++..+..+|..+-
T Consensus 75 av~~l~~~l~d~~~~vr~~a~~aLg~~~-----------~~~a~~~li~~l~~d---~~~~vR~~aa~aL~~~~------ 134 (335)
T COG1413 75 AVPLLRELLSDEDPRVRDAAADALGELG-----------DPEAVPPLVELLEND---ENEGVRAAAARALGKLG------ 134 (335)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHccC-----------ChhHHHHHHHHHHcC---CcHhHHHHHHHHHHhcC------
Confidence 3455667778888888888888555442 235789999999842 68899999999998873
Q ss_pred cccccccchHHHHHhhcchhHHHHHHHHHHhccChhhh-------HHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhc
Q 004582 500 MPLFHKDEICTFALFLDSEIMEEALEIIEVLSHQQNYA-------SELVASGIIPSIIKFLDTGTRESRELAIKILCNLS 572 (744)
Q Consensus 500 ~~iv~~Gai~~Lv~lL~s~~~e~A~~~L~~Ls~~~~~k-------~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs 572 (744)
...++.+++..+.......++..+ .......+ ..+.+.-+++.+...+...+..++..|+.+|..+.
T Consensus 135 ----~~~a~~~l~~~l~~~~~~~a~~~~--~~~~~~~r~~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~ 208 (335)
T COG1413 135 ----DERALDPLLEALQDEDSGSAAAAL--DAALLDVRAAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLG 208 (335)
T ss_pred ----chhhhHHHHHHhccchhhhhhhhc--cchHHHHHHHHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhh
Confidence 234578888888665421122222 00000111 12234558899999999999999999999999888
Q ss_pred CCcchHHHHHhcCCcHhHHHHhcCcc--HHHHHHHHHHHhc
Q 004582 573 SGDNIVYHILYLDCTSKLVRLLEDPI--LSSYCIKIIKALC 611 (744)
Q Consensus 573 ~~~~n~~~iv~aG~v~~Lv~lL~~~~--l~~~al~~L~nLa 611 (744)
... ..+++.+...+.+++ +...++..|..+-
T Consensus 209 ~~~--------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 209 SEN--------VEAADLLVKALSDESLEVRKAALLALGEIG 241 (335)
T ss_pred cch--------hhHHHHHHHHhcCCCHHHHHHHHHHhcccC
Confidence 765 345566777776654 4455555555554
No 142
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.60 E-value=0.024 Score=57.39 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=42.1
Q ss_pred CccccccccccCCCce----ecCCCccccHHHHHHHHccCCCCCCCCCCCCCCCCCc
Q 004582 263 EEFKCSISLRLMYDPV----VIASGKTFERVWIQKWFNAGHTTCPKTHMRLDNVSVT 315 (744)
Q Consensus 263 ~~f~CPI~~~~m~dPV----~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~~~l~ 315 (744)
..|+|||++-.|.+-. +-+|||.|.-.++++.- ..+||+|++++...+.+
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVI 163 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeE
Confidence 5699999999999864 44999999999988774 57999999999876543
No 143
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.50 E-value=0.37 Score=48.33 Aligned_cols=123 Identities=15% Similarity=0.173 Sum_probs=91.5
Q ss_pred ccCCHHHHHHHHHHHHHhcCCcchHHHHHhc----------------CCcHhHHHHhcC--------ccHHHHHHHHHHH
Q 004582 554 DTGTRESRELAIKILCNLSSGDNIVYHILYL----------------DCTSKLVRLLED--------PILSSYCIKIIKA 609 (744)
Q Consensus 554 ~s~~~~~k~~A~~aL~nLs~~~~n~~~iv~a----------------G~v~~Lv~lL~~--------~~l~~~al~~L~n 609 (744)
.+.+......++..|.||+..++.+..++.. ..+..|++.+.. .+-.++.+.+|.|
T Consensus 5 ~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 5 TDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred cCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 3344456677889999999998888766432 356777777744 1346889999999
Q ss_pred hc-CHHHHHHHHhhC-Cc--HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhC--CcHHHHHHHhh
Q 004582 610 LC-TSEARAAVAESN-PC--IDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTE--SIIQCVVDISV 676 (744)
Q Consensus 610 La-~~e~~~~i~~~~-g~--V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~--G~i~~Lv~Ll~ 676 (744)
++ .++||..+.+.. +. +..|+.++.+.+..-|.-++++|-|+|-....+..++... +++|.|+--+.
T Consensus 85 lS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 85 LSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred hcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 99 999999998743 33 6777777777888899999999999987766654555433 57777777665
No 144
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=94.49 E-value=0.026 Score=63.07 Aligned_cols=258 Identities=11% Similarity=0.102 Sum_probs=160.1
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCC--Ccc
Q 004582 424 SLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRD--EMP 501 (744)
Q Consensus 424 ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~n--k~~ 501 (744)
++..|..++.-+.--+...++++.-.=..-+..+.+.|+|..|++++.+ .|...|.+..|+|..+.-+.++ +..
T Consensus 436 Li~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s----KDdaLqans~wvlrHlmyncq~~ekf~ 511 (743)
T COG5369 436 LIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS----KDDALQANSEWVLRHLMYNCQKNEKFK 511 (743)
T ss_pred HHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc----chhhhhhcchhhhhhhhhcCcchhhhh
Confidence 4455655444444446667777664434456778899999999999987 6889999999999999887665 445
Q ss_pred cccccchHHHHHhhcch---hHHHHHHHHHHhccChhh----hHHHHhcC----CchhhhcccccCCHHHHHHHHHHHHH
Q 004582 502 LFHKDEICTFALFLDSE---IMEEALEIIEVLSHQQNY----ASELVASG----IIPSIIKFLDTGTRESRELAIKILCN 570 (744)
Q Consensus 502 iv~~Gai~~Lv~lL~s~---~~e~A~~~L~~Ls~~~~~----k~~I~~~G----~Ip~Lv~lL~s~~~~~k~~A~~aL~n 570 (744)
....-++..++++.+.+ +++..+.+|.|++.+..- +.-..... ....|++.+...++-.....+-.|.+
T Consensus 512 ~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~ 591 (743)
T COG5369 512 FLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVR 591 (743)
T ss_pred hHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHH
Confidence 56667788889988664 678999999999884322 21111111 23346666677777655666888999
Q ss_pred hcCCcchHHHHHh--cCCcHhHHHHhcC---------ccHHHH----HHHHHHHhcCHHHHHHHHhhCCcHHHHHH----
Q 004582 571 LSSGDNIVYHILY--LDCTSKLVRLLED---------PILSSY----CIKIIKALCTSEARAAVAESNPCIDSIAK---- 631 (744)
Q Consensus 571 Ls~~~~n~~~iv~--aG~v~~Lv~lL~~---------~~l~~~----al~~L~nLa~~e~~~~i~~~~g~V~~Lv~---- 631 (744)
++..+++...+|. ...+..+-.+|.+ +..-+. -.-+..++. +++|....++.
T Consensus 592 ~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~---------e~~d~f~r~~~~~p~ 662 (743)
T COG5369 592 NAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLS---------ENSDKFKRLVLTTPH 662 (743)
T ss_pred HHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeeccc---------ccccccccceecCCC
Confidence 9988888888764 3555555554411 110000 001111222 00111121111
Q ss_pred --HHcC----CCHHHHHHHHHHHHHHh---cC------CHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 004582 632 --LLET----GTREEQEHIVDVLLSLC---HE------HTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLD 694 (744)
Q Consensus 632 --lL~~----~s~~~~e~A~~~L~~Lc---~~------~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~ 694 (744)
.... ...+.--...|+..++. .+ ..++++.+.+.|.-..|+.+..+.++.+|+++..+|.+++
T Consensus 663 ~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 663 LDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENLR 740 (743)
T ss_pred ccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhhh
Confidence 1111 11222223333333321 11 2257778888999999999999999999999999998875
No 145
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.43 E-value=0.069 Score=41.80 Aligned_cols=55 Identities=9% Similarity=0.022 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 004582 638 REEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLL 693 (744)
Q Consensus 638 ~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L 693 (744)
|.+|..|+.+|.+++......... ....++|.|+.++.+.++.+|..|++.|..|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 578999999999988776654443 5567899999999999999999999988643
No 146
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.026 Score=60.06 Aligned_cols=48 Identities=19% Similarity=0.516 Sum_probs=39.5
Q ss_pred CCccccccccccCCCc-------------eecCCCccccHHHHHHHHccCCCCCCCCCCCCC
Q 004582 262 PEEFKCSISLRLMYDP-------------VVIASGKTFERVWIQKWFNAGHTTCPKTHMRLD 310 (744)
Q Consensus 262 p~~f~CPI~~~~m~dP-------------V~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~ 310 (744)
-.|=.|-||++-|-.| =-++|||.+--.|++.|.++ ..|||.|+.|+-
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCccc
Confidence 3567789998875433 68899999999999999986 679999999853
No 147
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=94.42 E-value=0.62 Score=55.72 Aligned_cols=258 Identities=17% Similarity=0.185 Sum_probs=148.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCccc
Q 004582 423 TSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPL 502 (744)
Q Consensus 423 ~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~i 502 (744)
.++.+..+.+.+.|.-|...|-.-...+.-+-..=.+...+..|+++|.+ .+.++|.-|+.+|.-+++.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D----~ngEVQnlAVKClg~lvsK------- 77 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLED----KNGEVQNLAVKCLGPLVSK------- 77 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhc----cCcHHHHHHHHHHHHHHhh-------
Confidence 57777888888888888777665443332221122345678889999988 7899999999999998742
Q ss_pred ccccchHHHHHhhcchh-----H---HHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCC------HHHHHHHHHHH
Q 004582 503 FHKDEICTFALFLDSEI-----M---EEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGT------RESRELAIKIL 568 (744)
Q Consensus 503 v~~Gai~~Lv~lL~s~~-----~---e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~------~~~k~~A~~aL 568 (744)
+...-+..+++-|.++. + -.+.+.....+..+............+.+...|..+. ..++-.++..|
T Consensus 78 vke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil 157 (1233)
T KOG1824|consen 78 VKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDIL 157 (1233)
T ss_pred chHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHH
Confidence 22233444555443331 1 1233333323322222222223334444444443322 23555555555
Q ss_pred HHhcCC-cchHHHHHhcCCcHhHHHHhcCc--cHHHHHHHHHHHhcCHHHHHHHHhhCCcHHHHHHHHcC-CCHHHHHHH
Q 004582 569 CNLSSG-DNIVYHILYLDCTSKLVRLLEDP--ILSSYCIKIIKALCTSEARAAVAESNPCIDSIAKLLET-GTREEQEHI 644 (744)
Q Consensus 569 ~nLs~~-~~n~~~iv~aG~v~~Lv~lL~~~--~l~~~al~~L~nLa~~e~~~~i~~~~g~V~~Lv~lL~~-~s~~~~e~A 644 (744)
..+-+. .+--.. ...+....++.-|..+ .++..|+.+|+.|+..-++.... +.+..|++=|.. ..+....--
T Consensus 158 ~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~---~li~~Ll~~L~~~~q~~~~rt~ 233 (1233)
T KOG1824|consen 158 ADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYV---ELIEHLLKGLSNRTQMSATRTY 233 (1233)
T ss_pred HHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHH---HHHHHHHhccCCCCchHHHHHH
Confidence 543221 111111 2345555666666554 47899999999999222222222 345666666643 456666666
Q ss_pred HHHHHHHhcCCHHHHHHHHhCCcHHHHHHHh---hcCCHHHHHHHHHHHHHhhhc
Q 004582 645 VDVLLSLCHEHTKYCQLANTESIIQCVVDIS---VNGNSRGKETAKELIMLLDHC 696 (744)
Q Consensus 645 ~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll---~~~s~~~r~~A~~lL~~L~~~ 696 (744)
+.+|..+|...+.. .--.-..++|.+.+.. +...++.|++...+|..|-..
T Consensus 234 Iq~l~~i~r~ag~r-~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r 287 (1233)
T KOG1824|consen 234 IQCLAAICRQAGHR-FGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR 287 (1233)
T ss_pred HHHHHHHHHHhcch-hhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh
Confidence 77788888665431 1111233789999988 788899999999999877533
No 148
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=94.26 E-value=1.2 Score=50.04 Aligned_cols=174 Identities=12% Similarity=0.007 Sum_probs=105.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcc
Q 004582 422 LTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMP 501 (744)
Q Consensus 422 ~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~ 501 (744)
..++..|.+.++.+|..++..+...- ....+.|+.+|++ .++.++..|+.+|..+-
T Consensus 120 ~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d----~d~~Vra~A~raLG~l~-------- 175 (410)
T TIGR02270 120 PWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTH----EDALVRAAALRALGELP-------- 175 (410)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcC----CCHHHHHHHHHHHHhhc--------
Confidence 45778888888888887775554411 2346789999987 79999999999998873
Q ss_pred cccccchHHHHHhhcchh---HHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCCcchH
Q 004582 502 LFHKDEICTFALFLDSEI---MEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIV 578 (744)
Q Consensus 502 iv~~Gai~~Lv~lL~s~~---~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~ 578 (744)
...+++.|...+.+.+ ...|+.+|..+- ..+++++++.+...........++ ++..+...
T Consensus 176 --~~~a~~~L~~al~d~~~~VR~aA~~al~~lG----------~~~A~~~l~~~~~~~g~~~~~~l~-~~lal~~~---- 238 (410)
T TIGR02270 176 --RRLSESTLRLYLRDSDPEVRFAALEAGLLAG----------SRLAWGVCRRFQVLEGGPHRQRLL-VLLAVAGG---- 238 (410)
T ss_pred --cccchHHHHHHHcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHhccCccHHHHHH-HHHHhCCc----
Confidence 3456777877776543 355666664332 223344555433322222222222 22222211
Q ss_pred HHHHhcCCcHhHHHHhcCccHHHHHHHHHHHhcCHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Q 004582 579 YHILYLDCTSKLVRLLEDPILSSYCIKIIKALCTSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCH 653 (744)
Q Consensus 579 ~~iv~aG~v~~Lv~lL~~~~l~~~al~~L~nLa~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~ 653 (744)
..+++.|..++.++.+...++.+|..+- . ...++.|++.+... ..+..|-.++..|+.
T Consensus 239 -----~~a~~~L~~ll~d~~vr~~a~~AlG~lg---------~-p~av~~L~~~l~d~--~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 239 -----PDAQAWLRELLQAAATRREALRAVGLVG---------D-VEAAPWCLEAMREP--PWARLAGEAFSLITG 296 (410)
T ss_pred -----hhHHHHHHHHhcChhhHHHHHHHHHHcC---------C-cchHHHHHHHhcCc--HHHHHHHHHHHHhhC
Confidence 1566777777777777777777776653 1 35567777766533 266666666666653
No 149
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.23 E-value=0.092 Score=41.06 Aligned_cols=52 Identities=12% Similarity=0.035 Sum_probs=42.4
Q ss_pred cHHHHHHHHHHHhc--CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 004582 598 ILSSYCIKIIKALC--TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSL 651 (744)
Q Consensus 598 ~l~~~al~~L~nLa--~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~L 651 (744)
.++..|+++|++++ .++....... .+++.|+.+|.+.++.+|.+|+++|.+|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~--~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLP--ELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHH--HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46788999999999 4555454444 6899999999999999999999998764
No 150
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.22 E-value=1.5 Score=51.28 Aligned_cols=209 Identities=15% Similarity=0.160 Sum_probs=143.4
Q ss_pred cHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhc-CCCCC
Q 004582 421 DLTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILS-QSRDE 499 (744)
Q Consensus 421 ~~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~-~~~nk 499 (744)
..+++..|.+.-+-+|.+|+..+..+.-.-++.- ...+|.|+.=|.+ +|+.+|-+|+.+++.|+. ++.|-
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl-----r~~FprL~EkLeD----pDp~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL-----RPCFPRLVEKLED----PDPSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH-----hhhHHHHHHhccC----CCchHHHHHHHHHHHHHhhCCccc
Confidence 3468888888888999999999988775444321 1357889999988 899999999999999987 55665
Q ss_pred cccccccchHHHHHhhcch-h---HHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHH-HHHHHHHHHH--Hhc
Q 004582 500 MPLFHKDEICTFALFLDSE-I---MEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRE-SRELAIKILC--NLS 572 (744)
Q Consensus 500 ~~iv~~Gai~~Lv~lL~s~-~---~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~-~k~~A~~aL~--nLs 572 (744)
..+ -|.+..+|-+. + ....+....+|+..+.- + ....+|+|.+++.+.... +.-.++.++. |++
T Consensus 217 L~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPR---L-gKKLieplt~li~sT~AmSLlYECvNTVVa~s~s 287 (877)
T KOG1059|consen 217 LQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR---L-GKKLIEPITELMESTVAMSLLYECVNTVVAVSMS 287 (877)
T ss_pred ccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCch---h-hhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhc
Confidence 543 35666676433 2 24555556666655432 2 234689999999876432 2222333222 455
Q ss_pred CCcchHHHHHhcCCcHhHHHHh--cCccHHHHHHHHHHHhc--CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHH
Q 004582 573 SGDNIVYHILYLDCTSKLVRLL--EDPILSSYCIKIIKALC--TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVL 648 (744)
Q Consensus 573 ~~~~n~~~iv~aG~v~~Lv~lL--~~~~l~~~al~~L~nLa--~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L 648 (744)
....++...++ =+|..|-.++ .|++++--.+-++..++ ++...++- -+.++..|+..++.+|-.|+..|
T Consensus 288 ~g~~d~~asiq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~------kdlIlrcL~DkD~SIRlrALdLl 360 (877)
T KOG1059|consen 288 SGMSDHSASIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH------KDLILRCLDDKDESIRLRALDLL 360 (877)
T ss_pred cCCCCcHHHHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh------HHHHHHHhccCCchhHHHHHHHH
Confidence 55444444443 2566676677 45789999999999998 66544321 36678889999999999999999
Q ss_pred HHHhcC
Q 004582 649 LSLCHE 654 (744)
Q Consensus 649 ~~Lc~~ 654 (744)
+.+.+.
T Consensus 361 ~gmVsk 366 (877)
T KOG1059|consen 361 YGMVSK 366 (877)
T ss_pred HHHhhh
Confidence 998754
No 151
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.15 E-value=1.1 Score=50.93 Aligned_cols=271 Identities=12% Similarity=0.123 Sum_probs=168.9
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhH-HHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCC
Q 004582 420 TDLTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRH-LAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRD 498 (744)
Q Consensus 420 ~~~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~-~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~n 498 (744)
.+.+.+.++..++....+.+++.|-.+.++-.--+. .. -++.++.+|+......++.++..-+..|..+-+.+.-
T Consensus 125 ~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tF----sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~ 200 (675)
T KOG0212|consen 125 EIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTF----SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDL 200 (675)
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHHhcccccccc----CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcH
Confidence 345677777766555556677777777765222121 11 2555555555433336888888888888777554433
Q ss_pred CcccccccchHHHHHhhcchh---HHHHHHHHHHhccChhhhHHHHh-cCCchhhhcccccCCHHHHHHHHHHHHHhcCC
Q 004582 499 EMPLFHKDEICTFALFLDSEI---MEEALEIIEVLSHQQNYASELVA-SGIIPSIIKFLDTGTRESRELAIKILCNLSSG 574 (744)
Q Consensus 499 k~~iv~~Gai~~Lv~lL~s~~---~e~A~~~L~~Ls~~~~~k~~I~~-~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~ 574 (744)
...-.-...++-|..+|..+. ...+-.+|.++-..=.++...++ ...++.++.-+.+..+.++..|+.-|.....-
T Consensus 201 ~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i 280 (675)
T KOG0212|consen 201 EMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKI 280 (675)
T ss_pred HHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcC
Confidence 322112234555556665432 22222223222111112222223 34788999999999999999999999888777
Q ss_pred cchHHHHHhcCCcHhHHHHhcCcc---HHHHHHH---HHHHhc-CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHH
Q 004582 575 DNIVYHILYLDCTSKLVRLLEDPI---LSSYCIK---IIKALC-TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDV 647 (744)
Q Consensus 575 ~~n~~~iv~aG~v~~Lv~lL~~~~---l~~~al~---~L~nLa-~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~ 647 (744)
..+.....-+|++..+++.+.+.+ +.+.+.. .|..+. .+....++ +-...+..|...+.+...+.|-.++.-
T Consensus 281 ~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~i-d~~~ii~vl~~~l~~~~~~tri~~L~W 359 (675)
T KOG0212|consen 281 PGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEI-DYGSIIEVLTKYLSDDREETRIAVLNW 359 (675)
T ss_pred CCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhcccc-chHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 665555566788888888886532 3333322 234444 45555443 323567888888888888888888887
Q ss_pred HHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 004582 648 LLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLDHC 696 (744)
Q Consensus 648 L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~~~ 696 (744)
+..|-...+. .-.+....+.+.|..-+.+.++.+-..+..++..+...
T Consensus 360 i~~l~~~~p~-ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 360 IILLYHKAPG-QLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS 407 (675)
T ss_pred HHHHHhhCcc-hhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC
Confidence 7777655433 23444555889999999999999999999988877643
No 152
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=94.13 E-value=0.019 Score=62.06 Aligned_cols=33 Identities=15% Similarity=0.459 Sum_probs=29.7
Q ss_pred CccccccccccCCCceecCCCccccHHHHHHHH
Q 004582 263 EEFKCSISLRLMYDPVVIASGKTFERVWIQKWF 295 (744)
Q Consensus 263 ~~f~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~ 295 (744)
+++.||||...++||+|++|||+.||.|-..-+
T Consensus 3 eelkc~vc~~f~~epiil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 3 EELKCPVCGSFYREPIILPCSHNLCQACARNIL 35 (699)
T ss_pred ccccCceehhhccCceEeecccHHHHHHHHhhc
Confidence 679999999999999999999999999976443
No 153
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.96 E-value=1.4 Score=51.71 Aligned_cols=215 Identities=12% Similarity=0.122 Sum_probs=139.4
Q ss_pred CCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcC------------CC
Q 004582 430 SRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQ------------SR 497 (744)
Q Consensus 430 s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~------------~~ 497 (744)
+.+.++|..|+..|..+..-..+.-..-.....+..-+.-.++ .+.++...|+..-.++|.. +.
T Consensus 228 ~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks----~~deValQaiEFWsticeEEiD~~~e~~e~~d~ 303 (859)
T KOG1241|consen 228 SPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKS----DNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQ 303 (859)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4578889999999999886554443332333344444555565 6788888888887777642 11
Q ss_pred CCcc----cc---cccchHHHHHhhcch---------hHH-HHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHH
Q 004582 498 DEMP----LF---HKDEICTFALFLDSE---------IME-EALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRES 560 (744)
Q Consensus 498 nk~~----iv---~~Gai~~Lv~lL~s~---------~~e-~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~ 560 (744)
+... +. -.+++|.|+++|... +.. .|-.+|..++. -.+..|+. -.+|.+=+-+++++-+-
T Consensus 304 ~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~--~~~D~Iv~-~Vl~Fiee~i~~pdwr~ 380 (859)
T KOG1241|consen 304 GLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ--CVGDDIVP-HVLPFIEENIQNPDWRN 380 (859)
T ss_pred CCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH--Hhcccchh-hhHHHHHHhcCCcchhh
Confidence 2211 11 237888899988431 122 34444554443 12333332 34555555677888899
Q ss_pred HHHHHHHHHHhcCCcch-HHHHHhcCCcHhHHHHhcCcc--HHHHHHHHHHHhc--CHHHHHHHHhhCCcHHHHHHHHcC
Q 004582 561 RELAIKILCNLSSGDNI-VYHILYLDCTSKLVRLLEDPI--LSSYCIKIIKALC--TSEARAAVAESNPCIDSIAKLLET 635 (744)
Q Consensus 561 k~~A~~aL~nLs~~~~n-~~~iv~aG~v~~Lv~lL~~~~--l~~~al~~L~nLa--~~e~~~~i~~~~g~V~~Lv~lL~~ 635 (744)
++.|+.|+..+-..++- +..-+..+++|.++.++.|+. +++.+.|+|+.++ .++.+..-..-.+.+..+++-| +
T Consensus 381 reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL-~ 459 (859)
T KOG1241|consen 381 REAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL-N 459 (859)
T ss_pred hhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh-h
Confidence 99999999998887663 444467799999999999875 4688999999999 5544332222124445554444 3
Q ss_pred CCHHHHHHHHHHHHHHh
Q 004582 636 GTREEQEHIVDVLLSLC 652 (744)
Q Consensus 636 ~s~~~~e~A~~~L~~Lc 652 (744)
..|.+-.+++|++.+|+
T Consensus 460 DePrva~N~CWAf~~La 476 (859)
T KOG1241|consen 460 DEPRVASNVCWAFISLA 476 (859)
T ss_pred hCchHHHHHHHHHHHHH
Confidence 67899999999999998
No 154
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.84 E-value=0.16 Score=50.45 Aligned_cols=75 Identities=24% Similarity=0.349 Sum_probs=63.3
Q ss_pred HHHHHhcCCcHhHHHHhcC-----------ccHHHHHHHHHHHhc-CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHH
Q 004582 578 VYHILYLDCTSKLVRLLED-----------PILSSYCIKIIKALC-TSEARAAVAESNPCIDSIAKLLETGTREEQEHIV 645 (744)
Q Consensus 578 ~~~iv~aG~v~~Lv~lL~~-----------~~l~~~al~~L~nLa-~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~ 645 (744)
...+++.||+..|+.+|.. ......++.+|..|. +..|...++...+++..|+..|.+.++.++..++
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l 179 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL 179 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence 3456678999999998831 146788999999999 9999999999899999999999999999999999
Q ss_pred HHHHHHh
Q 004582 646 DVLLSLC 652 (744)
Q Consensus 646 ~~L~~Lc 652 (744)
.+|..+|
T Consensus 180 eiL~~lc 186 (187)
T PF06371_consen 180 EILAALC 186 (187)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999998
No 155
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=93.76 E-value=0.4 Score=54.98 Aligned_cols=168 Identities=18% Similarity=0.205 Sum_probs=115.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCc-
Q 004582 422 LTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEM- 500 (744)
Q Consensus 422 ~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~- 500 (744)
+.++..+.+..|..+..+++.|..++...+. .....-..+||.+.+.|.+ ..++++++|..+|.++++-.+|..
T Consensus 257 psll~~l~~~kWrtK~aslellg~m~~~ap~-qLs~~lp~iiP~lsevl~D----T~~evr~a~~~~l~~~~svidN~dI 331 (569)
T KOG1242|consen 257 PSLLGSLLEAKWRTKMASLELLGAMADCAPK-QLSLCLPDLIPVLSEVLWD----TKPEVRKAGIETLLKFGSVIDNPDI 331 (569)
T ss_pred hhhHHHHHHHhhhhHHHHHHHHHHHHHhchH-HHHHHHhHhhHHHHHHHcc----CCHHHHHHHHHHHHHHHHhhccHHH
Confidence 4455555555899999999999988876443 3445557899999999998 789999999999999966322211
Q ss_pred -------------------------------ccccccchHHHHHhhcchh-------HHHHHHHHHHhccChhhhHHHHh
Q 004582 501 -------------------------------PLFHKDEICTFALFLDSEI-------MEEALEIIEVLSHQQNYASELVA 542 (744)
Q Consensus 501 -------------------------------~iv~~Gai~~Lv~lL~s~~-------~e~A~~~L~~Ls~~~~~k~~I~~ 542 (744)
..+++-.+..++.+|.++. ...++.+..|++..-++...+..
T Consensus 332 ~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lap 411 (569)
T KOG1242|consen 332 QKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAP 411 (569)
T ss_pred HHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhh
Confidence 1223344555555554432 23577778888876655544432
Q ss_pred --cCCchhhhcccccCCHHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcCc
Q 004582 543 --SGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLEDP 597 (744)
Q Consensus 543 --~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~ 597 (744)
...+|.|=+.+.+..+++|..|+.||..+-....+... .+.+|-+.+.+++.
T Consensus 412 fl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f---~d~~p~l~e~~~~~ 465 (569)
T KOG1242|consen 412 FLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF---DDLIPELSETLTSE 465 (569)
T ss_pred hHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc---cccccHHHHhhccc
Confidence 34566666666777889999999999877665544333 57778888777654
No 156
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=93.74 E-value=1.2 Score=42.78 Aligned_cols=89 Identities=15% Similarity=0.174 Sum_probs=63.6
Q ss_pred ccchhhhHHhHHHHHHHHHHHHhhhhhHHhhCCCCCcc-hhhhhhHHHHHHHHHHHHHHhhccCeeeehhhhhHHHHHHH
Q 004582 14 YCTVKVHRLMCLELKTLINKISHIHSDIESARPGCTSG-IHVLCSFHVAVDKSKLLIQYCSESSKLYLAITADRIQMKFE 92 (744)
Q Consensus 14 ~~~~~~~~~~c~~l~~~~~ri~~l~~~lee~r~~~~~~-~~~l~~L~~~l~~ak~Ll~~c~~~Sklyl~~~~~~i~~~~~ 92 (744)
...+..++..+.+|...+.+|.+++-.++.+....+.. ..-+..|...|++|+.|++.|+..+ -|=++.--....+++
T Consensus 26 ~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~-r~n~~kk~~y~~Ki~ 104 (147)
T PF05659_consen 26 SKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVR-RWNLYKKPRYARKIE 104 (147)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhcccc-HHHHHhhHhHHHHHH
Confidence 34445667777776666666655544444433322333 7888889999999999999999875 456678888899999
Q ss_pred HHHHHHHHHHH
Q 004582 93 RVRNTLELCLS 103 (744)
Q Consensus 93 ~~~~~l~~~L~ 103 (744)
++-.+|...++
T Consensus 105 ~le~~l~~f~~ 115 (147)
T PF05659_consen 105 ELEESLRRFIQ 115 (147)
T ss_pred HHHHHHHHHhc
Confidence 98888888664
No 157
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=0.056 Score=56.27 Aligned_cols=47 Identities=19% Similarity=0.450 Sum_probs=38.0
Q ss_pred cccccccccCC--Cc-eecCCCccccHHHHHHHHccCCCCCCCCCCCCCC
Q 004582 265 FKCSISLRLMY--DP-VVIASGKTFERVWIQKWFNAGHTTCPKTHMRLDN 311 (744)
Q Consensus 265 f~CPI~~~~m~--dP-V~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~ 311 (744)
.-|-||+.=|. |- +++||.|.|-+.||.+|+..-...||+|+.++++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 57999976552 33 4569999999999999998666789999988764
No 158
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.48 E-value=0.5 Score=53.41 Aligned_cols=151 Identities=21% Similarity=0.179 Sum_probs=112.5
Q ss_pred hhhcccccCCHHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcCcc------HHHHHHHHHHHhc-CHHHHHHHH
Q 004582 548 SIIKFLDTGTRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLEDPI------LSSYCIKIIKALC-TSEARAAVA 620 (744)
Q Consensus 548 ~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~~------l~~~al~~L~nLa-~~e~~~~i~ 620 (744)
.+.+++.+|+...+..|++.|..+|.+..-...+++..++..|..++.|++ +...++.++..|- +.--.-..+
T Consensus 87 ~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~~ 166 (713)
T KOG2999|consen 87 RIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWESV 166 (713)
T ss_pred HHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeeec
Confidence 356778899999999999999999999999999999999999999998764 3444444444443 211111112
Q ss_pred hhCCcHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhh-hcC
Q 004582 621 ESNPCIDSIAKLLE--TGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLD-HCK 697 (744)
Q Consensus 621 ~~~g~V~~Lv~lL~--~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~-~~~ 697 (744)
. ..+|...+.+.. .-+..+-..|+.+|.++..++....+.+.++--+..|+..++.++.+++.+|..++..|- ++.
T Consensus 167 ~-~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a~ 245 (713)
T KOG2999|consen 167 S-NDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKAP 245 (713)
T ss_pred c-cHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhCC
Confidence 2 234444444442 235567789999999999998888899999999999999999999999999999996554 554
Q ss_pred CC
Q 004582 698 ED 699 (744)
Q Consensus 698 ~~ 699 (744)
.+
T Consensus 246 ~~ 247 (713)
T KOG2999|consen 246 DD 247 (713)
T ss_pred hH
Confidence 44
No 159
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.44 E-value=0.51 Score=41.93 Aligned_cols=91 Identities=10% Similarity=0.122 Sum_probs=67.2
Q ss_pred HHHHHHHHHhc--CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh-CCcHHHHHHHhhc
Q 004582 601 SYCIKIIKALC--TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANT-ESIIQCVVDISVN 677 (744)
Q Consensus 601 ~~al~~L~nLa--~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~-~G~i~~Lv~Ll~~ 677 (744)
.-++..|+..+ -+..-....+ ..++.++..+.+.+.++|..|+.+|++++..... ..+.. ..+...|..++.+
T Consensus 4 ~ggli~Laa~ai~l~~~~~~~l~--~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~--~~l~~f~~IF~~L~kl~~D 79 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKDISKYLD--EILPPVLKCFDDQDSRVRYYACEALYNISKVARG--EILPYFNEIFDALCKLSAD 79 (97)
T ss_pred hHHHHHHHHHHHHchHhHHHHHH--HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcC
Confidence 34566666666 3333333444 5788888999999999999999999999865433 22222 4488999999999
Q ss_pred CCHHHHHHHHHHHHHhhh
Q 004582 678 GNSRGKETAKELIMLLDH 695 (744)
Q Consensus 678 ~s~~~r~~A~~lL~~L~~ 695 (744)
.++++|..|..+-++|.+
T Consensus 80 ~d~~Vr~~a~~Ld~llkd 97 (97)
T PF12755_consen 80 PDENVRSAAELLDRLLKD 97 (97)
T ss_pred CchhHHHHHHHHHHHhcC
Confidence 999999999877777753
No 160
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.34 E-value=1.8 Score=44.58 Aligned_cols=141 Identities=15% Similarity=0.128 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcC-------ccHHHHHHHHHHHhc---CHHHHHHHHhhCCcHHH
Q 004582 559 ESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLED-------PILSSYCIKIIKALC---TSEARAAVAESNPCIDS 628 (744)
Q Consensus 559 ~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~-------~~l~~~al~~L~nLa---~~e~~~~i~~~~g~V~~ 628 (744)
.-.-+|+..|..++++++.+..++++.+--.|..+|.- +-++-.++++++.|. ..+....+.. .++||.
T Consensus 94 nRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~-TeIVPl 172 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLT-TEIVPL 172 (293)
T ss_pred chHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHH-hhhHHH
Confidence 34467888888999999999999999988888888832 246788999999999 3444445556 599999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCHH---HHHHHHhCCcH-----HHHHHHhhcCCHHHHHHHHHHHHHhhhcCCCC
Q 004582 629 IAKLLETGTREEQEHIVDVLLSLCHEHTK---YCQLANTESII-----QCVVDISVNGNSRGKETAKELIMLLDHCKEDN 700 (744)
Q Consensus 629 Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~---~~~~v~~~G~i-----~~Lv~Ll~~~s~~~r~~A~~lL~~L~~~~~~~ 700 (744)
.++.++.|+...|.-|..++.-+-.++.+ .|+...+--+| ..+..+...++.+.-+.+......|++.....
T Consensus 173 CLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar 252 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRAR 252 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999998877655543 23333333222 23445667888899888888888887654433
No 161
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.30 E-value=6.5 Score=42.15 Aligned_cols=254 Identities=14% Similarity=0.097 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcccccccchHHHHH
Q 004582 434 GSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPLFHKDEICTFAL 513 (744)
Q Consensus 434 e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~iv~~Gai~~Lv~ 513 (744)
-.|.+.++.|-.+..-++..-....+.|.+..|..-|+. ..|.-+.-+.+.....|......+.-+.+.|.|..+..
T Consensus 186 iaRvRVleLIieifSiSpesaneckkSGLldlLeaElkG---teDtLVianciElvteLaeteHgreflaQeglIdlicn 262 (524)
T KOG4413|consen 186 IARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKG---TEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICN 262 (524)
T ss_pred HHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcC---CcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHH
Confidence 345556666666666666666677788988888887765 26777788888888888888888888889999999988
Q ss_pred hhc---chhHH--HHHH----HHHHhccChhhhHHHHh--cCCchhhhcccccCCHHHHHHHHHHHHHhcCCcchHHHHH
Q 004582 514 FLD---SEIME--EALE----IIEVLSHQQNYASELVA--SGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIVYHIL 582 (744)
Q Consensus 514 lL~---s~~~e--~A~~----~L~~Ls~~~~~k~~I~~--~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~iv 582 (744)
+.. ++-.+ .++- .+.+++..+-.-..+++ .-+|...++++...++...+.|+.+|..|-++.+.+..+.
T Consensus 263 IIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlll 342 (524)
T KOG4413|consen 263 IISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLL 342 (524)
T ss_pred HhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHh
Confidence 874 33222 1222 22233322222233333 2356666778888999999999999999999999887777
Q ss_pred hcCC--cHhHHHHhcC---ccHHHHHHHHHHHhc-C----H----HHHH------HHHhhC------CcHHHHHHHHcCC
Q 004582 583 YLDC--TSKLVRLLED---PILSSYCIKIIKALC-T----S----EARA------AVAESN------PCIDSIAKLLETG 636 (744)
Q Consensus 583 ~aG~--v~~Lv~lL~~---~~l~~~al~~L~nLa-~----~----e~~~------~i~~~~------g~V~~Lv~lL~~~ 636 (744)
+.|- ...++.-..+ ..-++.++.+|.+++ . + +|+. .+.++. .-......++...
T Consensus 343 kTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp 422 (524)
T KOG4413|consen 343 KTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP 422 (524)
T ss_pred ccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC
Confidence 7663 3333332223 234677788888887 2 1 2222 122210 1233455666778
Q ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCC---HHHHHHHHHHH
Q 004582 637 TREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGN---SRGKETAKELI 690 (744)
Q Consensus 637 s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s---~~~r~~A~~lL 690 (744)
.|+++-.+..++..++...=........+|.+...++-..... .++|-..+++|
T Consensus 423 fpEihcAalktfTAiaaqPWalkeifakeefieiVtDastEhaKaakdAkYeccKAi 479 (524)
T KOG4413|consen 423 FPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAI 479 (524)
T ss_pred ChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHH
Confidence 8999999999999998776555556667777766665443332 23444445544
No 162
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.17 E-value=1.5 Score=45.15 Aligned_cols=227 Identities=19% Similarity=0.216 Sum_probs=136.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHh-hCCChHHHHHH-------hcccc-cCCCHHHHHHHHHHHHHH
Q 004582 422 LTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAF-LNSYVKPLIKF-------LKDAH-NLCDAKAQKDGAEVLLAI 492 (744)
Q Consensus 422 ~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~-~~G~I~~LV~l-------L~~~~-~~~d~~~q~~A~~~L~nL 492 (744)
..++..|.++. .+..|+..|..--+..++--..+. .-|.+..|+.= |+-.. ......-..+|+..|.-+
T Consensus 29 ~~~i~~l~~~p--~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcv 106 (293)
T KOG3036|consen 29 YQLILSLVSPP--TREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCV 106 (293)
T ss_pred hhHHHHhhCCc--hHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHH
Confidence 34444454443 345566666655443333333332 34544444432 11110 011223446788888888
Q ss_pred hcCCCCCcccccccchHHHHHhhcchh--------HHHHHHHHHHhccChhh--hHHHHhcCCchhhhcccccCCHHHHH
Q 004582 493 LSQSRDEMPLFHKDEICTFALFLDSEI--------MEEALEIIEVLSHQQNY--ASELVASGIIPSIIKFLDTGTRESRE 562 (744)
Q Consensus 493 s~~~~nk~~iv~~Gai~~Lv~lL~s~~--------~e~A~~~L~~Ls~~~~~--k~~I~~~G~Ip~Lv~lL~s~~~~~k~ 562 (744)
+++.+.|..++++-.=--|-.+|+.+. .-.+++++..|...++. -..+...+.||..++++..|++..|.
T Consensus 107 ASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKt 186 (293)
T KOG3036|consen 107 ASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKT 186 (293)
T ss_pred hcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHH
Confidence 999999999888754444444554321 13588888888766543 44445789999999999999999999
Q ss_pred HHHHHHHHhcCCcchHHHHHh--------cCCcHhHHHHh---cCccHHHHHHHHHHHhc-CHHHHHHHHhhCCcHHHH-
Q 004582 563 LAIKILCNLSSGDNIVYHILY--------LDCTSKLVRLL---EDPILSSYCIKIIKALC-TSEARAAVAESNPCIDSI- 629 (744)
Q Consensus 563 ~A~~aL~nLs~~~~n~~~iv~--------aG~v~~Lv~lL---~~~~l~~~al~~L~nLa-~~e~~~~i~~~~g~V~~L- 629 (744)
.|+.++..+-.++..-..+-+ .-.+..++.-| .++.+...++.+..+|+ ++..|.++... .|..
T Consensus 187 vA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~c---lPd~L 263 (293)
T KOG3036|consen 187 VATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRSC---LPDQL 263 (293)
T ss_pred HHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhh---Ccchh
Confidence 999999998888765444421 12233333333 23467899999999999 99999877652 2221
Q ss_pred ----HHHHcCCCHHHHHHHHHHHHHHhc
Q 004582 630 ----AKLLETGTREEQEHIVDVLLSLCH 653 (744)
Q Consensus 630 ----v~lL~~~s~~~~e~A~~~L~~Lc~ 653 (744)
...+-..++..+..-...+.++|.
T Consensus 264 rd~tfs~~l~~D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 264 RDGTFSLLLKDDPETKQWLQQLLKNLCT 291 (293)
T ss_pred ccchHHHHHhcChhHHHHHHHHHHHhcc
Confidence 112223455556555555555553
No 163
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.70 E-value=0.068 Score=57.85 Aligned_cols=66 Identities=20% Similarity=0.351 Sum_probs=50.1
Q ss_pred cccccccccCCCc-----eecCCCccccHHHHHHHHcc-CCCCCCCCCCCCCCCCCcccHHHHHHH---HHHHHH
Q 004582 265 FKCSISLRLMYDP-----VVIASGKTFERVWIQKWFNA-GHTTCPKTHMRLDNVSVTPNVAIKELI---SQWCLK 330 (744)
Q Consensus 265 f~CPI~~~~m~dP-----V~~~~G~ty~r~~I~~w~~~-~~~~cP~t~~~l~~~~l~pn~~l~~~i---~~~~~~ 330 (744)
-.||||++-..=| |++.|||-|--.||++|+-+ -...||.|.-.-...++.|-+++|..- +.||..
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa~dt~~~~rl 79 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQAMDTENEQRL 79 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 5799999887777 56799999999999999942 134699997766667888888877654 345543
No 164
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=92.47 E-value=0.28 Score=57.06 Aligned_cols=147 Identities=13% Similarity=0.150 Sum_probs=99.9
Q ss_pred chhhhcccccCCHHHHHHHHHHHHHhcCCcchHH---HHHhcCCcHhHHHHhcC--ccHHHHHHHHHHHhcCHHHHHHH-
Q 004582 546 IPSIIKFLDTGTRESRELAIKILCNLSSGDNIVY---HILYLDCTSKLVRLLED--PILSSYCIKIIKALCTSEARAAV- 619 (744)
Q Consensus 546 Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~---~iv~aG~v~~Lv~lL~~--~~l~~~al~~L~nLa~~e~~~~i- 619 (744)
+..+++.|++.+..+|..|+..+..|+..-.++. .|...|+| |.+-|.. +++.-..+.+|..+.+--|-..+
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence 4456778899999999999999988876554443 33344543 5556633 56665555555555511111111
Q ss_pred HhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 004582 620 AESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLD 694 (744)
Q Consensus 620 ~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~ 694 (744)
--..+.+|.|..+|++...+++++++..+..+|-.++++...-.=.-+-=-|++++...+..+|+.|...+-.++
T Consensus 879 pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Ia 953 (1172)
T KOG0213|consen 879 PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIA 953 (1172)
T ss_pred CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 011378999999999999999999999999999877664322221223345788899999999999988776654
No 165
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=92.41 E-value=4.2 Score=46.52 Aligned_cols=254 Identities=14% Similarity=0.107 Sum_probs=118.7
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcccccc
Q 004582 426 SKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPLFHK 505 (744)
Q Consensus 426 ~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~iv~~ 505 (744)
.+|.+.-.-++.+++..+..++..|... ... ..++..|-.+|++ .....|-.|+.+|-.++.....+.... +
T Consensus 271 ~wls~k~emV~lE~Ar~v~~~~~~nv~~--~~~-~~~vs~L~~fL~s----~rv~~rFsA~Riln~lam~~P~kv~vc-N 342 (898)
T COG5240 271 SWLSDKFEMVFLEAARAVCALSEENVGS--QFV-DQTVSSLRTFLKS----TRVVLRFSAMRILNQLAMKYPQKVSVC-N 342 (898)
T ss_pred HHhcCcchhhhHHHHHHHHHHHHhccCH--HHH-HHHHHHHHHHHhc----chHHHHHHHHHHHHHHHhhCCceeeec-C
Confidence 4555555678888999999888765111 111 1234444555655 677888899999999876544443321 1
Q ss_pred cchHHHHHhhcchhHHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCCcchHHH-----
Q 004582 506 DEICTFALFLDSEIMEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIVYH----- 580 (744)
Q Consensus 506 Gai~~Lv~lL~s~~~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~----- 580 (744)
--++.|+.=-+......|..+|.. +..+++-..++. .||..++=+ +...|.-++.||..||..-+.+..
T Consensus 343 ~evEsLIsd~Nr~IstyAITtLLK-TGt~e~idrLv~--~I~sfvhD~---SD~FKiI~ida~rsLsl~Fp~k~~s~l~F 416 (898)
T COG5240 343 KEVESLISDENRTISTYAITTLLK-TGTEETIDRLVN--LIPSFVHDM---SDGFKIIAIDALRSLSLLFPSKKLSYLDF 416 (898)
T ss_pred hhHHHHhhcccccchHHHHHHHHH-cCchhhHHHHHH--HHHHHHHhh---ccCceEEeHHHHHHHHhhCcHHHHHHHHH
Confidence 122222222222222344444431 222333333321 222222222 222333333344444332221111
Q ss_pred ----HHhcCCc-------HhHHHHh-cCccHHHHHHHHHHHhc--CHHHHH--HHH---hhCC--------cHHHHHHHH
Q 004582 581 ----ILYLDCT-------SKLVRLL-EDPILSSYCIKIIKALC--TSEARA--AVA---ESNP--------CIDSIAKLL 633 (744)
Q Consensus 581 ----iv~aG~v-------~~Lv~lL-~~~~l~~~al~~L~nLa--~~e~~~--~i~---~~~g--------~V~~Lv~lL 633 (744)
+.+.|+. .++.+++ .+|+.++.|+..|+..- +.-+.. .|. ..+| .|..+..-+
T Consensus 417 L~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~ 496 (898)
T COG5240 417 LGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRL 496 (898)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHH
Confidence 1122322 2233333 22445555444444333 111111 000 0000 122222222
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 004582 634 ETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLDHC 696 (744)
Q Consensus 634 ~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~~~ 696 (744)
--.+.-+|-.|+.+|...+-+-. ..+....+...|-..+.+.++++|+.|..+|+.|+..
T Consensus 497 iLEN~ivRsaAv~aLskf~ln~~---d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~ 556 (898)
T COG5240 497 ILENNIVRSAAVQALSKFALNIS---DVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLS 556 (898)
T ss_pred HHhhhHHHHHHHHHHHHhccCcc---ccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhh
Confidence 22334566677777755543321 1122334556677888899999999999999999843
No 166
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=92.33 E-value=2 Score=44.89 Aligned_cols=138 Identities=14% Similarity=0.121 Sum_probs=98.2
Q ss_pred CCHHHHHHHHHHHHHhc-CCcchHHHHHh-cCCcHhHHHHh-------cCcc-------HHHHHHHHHHHhc-CHHHHHH
Q 004582 556 GTRESRELAIKILCNLS-SGDNIVYHILY-LDCTSKLVRLL-------EDPI-------LSSYCIKIIKALC-TSEARAA 618 (744)
Q Consensus 556 ~~~~~k~~A~~aL~nLs-~~~~n~~~iv~-aG~v~~Lv~lL-------~~~~-------l~~~al~~L~nLa-~~e~~~~ 618 (744)
-+++.|+.|+.-|..-- ..++-...+.. -|.+..|+.=+ ..+. -+-+|++.|.-+| +++.|..
T Consensus 7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~ 86 (262)
T PF04078_consen 7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMP 86 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHH
T ss_pred cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence 35677887776666443 33444444544 48888876644 2222 2567888899999 9999999
Q ss_pred HHhhCCcHHHHHHHHcCCC-----HHHHHHHHHHHHHHhcC-CHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 004582 619 VAESNPCIDSIAKLLETGT-----REEQEHIVDVLLSLCHE-HTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIML 692 (744)
Q Consensus 619 i~~~~g~V~~Lv~lL~~~s-----~~~~e~A~~~L~~Lc~~-~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~ 692 (744)
+++ +...--|..+|.+++ .-.|-.+++++..|... +.+....+.+..++|..+..++.|+.-.|..|..+++.
T Consensus 87 Fl~-a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 87 FLK-AHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHH-TTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHH-cCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999 576667777886543 34577889999999865 44677788899999999999999999999999999976
Q ss_pred hh
Q 004582 693 LD 694 (744)
Q Consensus 693 L~ 694 (744)
+=
T Consensus 166 IL 167 (262)
T PF04078_consen 166 IL 167 (262)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 167
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=92.28 E-value=1.6 Score=45.71 Aligned_cols=93 Identities=12% Similarity=0.221 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhc--CHHHHHHHHhhCCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHh
Q 004582 599 LSSYCIKIIKALC--TSEARAAVAESNPCIDSIAKLLE-TGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDIS 675 (744)
Q Consensus 599 l~~~al~~L~nLa--~~e~~~~i~~~~g~V~~Lv~lL~-~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll 675 (744)
....|+.+|.-++ +|..+..+.+ ...+..|+++|+ ...+.++-.++.+|..+...++.+.....+.+++..++.++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r-~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHR-EQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhh-hhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 3567889999999 9999998888 688999999995 56899999999999999999999999999999999999999
Q ss_pred hcC--CHHHHHHHHHHHHH
Q 004582 676 VNG--NSRGKETAKELIML 692 (744)
Q Consensus 676 ~~~--s~~~r~~A~~lL~~ 692 (744)
++. +.++|-+...-|..
T Consensus 186 k~~~~~~~~r~K~~EFL~f 204 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYF 204 (257)
T ss_pred ccccccHHHhHHHHHHHHH
Confidence 865 46788777776543
No 168
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.24 E-value=0.095 Score=56.89 Aligned_cols=43 Identities=19% Similarity=0.429 Sum_probs=38.3
Q ss_pred ccccccccccCCC---ceecCCCccccHHHHHHHHccCC--CCCCCCC
Q 004582 264 EFKCSISLRLMYD---PVVIASGKTFERVWIQKWFNAGH--TTCPKTH 306 (744)
Q Consensus 264 ~f~CPI~~~~m~d---PV~~~~G~ty~r~~I~~w~~~~~--~~cP~t~ 306 (744)
-|.|||..+-=.| |+.++|||..++.+|.+-...|. ..||.|-
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP 381 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCP 381 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCC
Confidence 3899999998877 99999999999999999998887 6699983
No 169
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.92 E-value=0.1 Score=55.99 Aligned_cols=53 Identities=28% Similarity=0.460 Sum_probs=48.2
Q ss_pred ccccccccccCCCceecCCCccccHHHHHHHHccCCCCCCCCCCCCCCCCCccc
Q 004582 264 EFKCSISLRLMYDPVVIASGKTFERVWIQKWFNAGHTTCPKTHMRLDNVSVTPN 317 (744)
Q Consensus 264 ~f~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~~~l~pn 317 (744)
.-.|.+++..|.|||-+..|..||-..|--|++. +.+=|.||+++...+|++=
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dLIkL 92 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDLIKL 92 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCccccccceee
Confidence 4579999999999999999999999999999986 6788999999998888773
No 170
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.86 E-value=0.093 Score=57.57 Aligned_cols=42 Identities=21% Similarity=0.525 Sum_probs=35.8
Q ss_pred cccccccccCCCce----ecCCCccccHHHHHHHHccCCCCCCCCCCCC
Q 004582 265 FKCSISLRLMYDPV----VIASGKTFERVWIQKWFNAGHTTCPKTHMRL 309 (744)
Q Consensus 265 f~CPI~~~~m~dPV----~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l 309 (744)
-.||+|++=|-+-| ++.|.|+|--.|+.+|++ .+||+|+-..
T Consensus 176 PTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q 221 (493)
T KOG0804|consen 176 PTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQ 221 (493)
T ss_pred CCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhc
Confidence 38999999998887 568999999999999975 5899997543
No 171
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=91.71 E-value=0.31 Score=48.88 Aligned_cols=91 Identities=10% Similarity=-0.028 Sum_probs=71.5
Q ss_pred cccchHHHHHhhcch---------hHHHHHHHHHHhccChhhhHHHHhc--CC--chhhhcccccCCHHHHHHHHHHHHH
Q 004582 504 HKDEICTFALFLDSE---------IMEEALEIIEVLSHQQNYASELVAS--GI--IPSIIKFLDTGTRESRELAIKILCN 570 (744)
Q Consensus 504 ~~Gai~~Lv~lL~s~---------~~e~A~~~L~~Ls~~~~~k~~I~~~--G~--Ip~Lv~lL~s~~~~~k~~A~~aL~n 570 (744)
+..++..|+..+..| .....+.++.|+|..++.|..+.+. +. +..|+-.+.+.+..-|.-++.+|.|
T Consensus 50 ~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrN 129 (192)
T PF04063_consen 50 SGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRN 129 (192)
T ss_pred hHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 445788888887542 1267899999999999999999963 34 6677777787888888999999999
Q ss_pred hcCCcchHHHHHhc---CCcHhHHHHh
Q 004582 571 LSSGDNIVYHILYL---DCTSKLVRLL 594 (744)
Q Consensus 571 Ls~~~~n~~~iv~a---G~v~~Lv~lL 594 (744)
+|.+.+.+..+... +++|.|+--|
T Consensus 130 ccFd~~~H~~LL~~~~~~iLp~LLlPL 156 (192)
T PF04063_consen 130 CCFDTDSHEWLLSDDEVDILPYLLLPL 156 (192)
T ss_pred hhccHhHHHHhcCchhhhhHHHHHhhc
Confidence 99999999988763 5666655544
No 172
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=91.48 E-value=0.9 Score=51.80 Aligned_cols=111 Identities=14% Similarity=0.086 Sum_probs=86.1
Q ss_pred HHHHHHHhcCCcchHHHHHhcCCcHhHHHHh---------c---CccHHHHHHHHHHHhc--CHHHHHHHHhhCCcHHHH
Q 004582 564 AIKILCNLSSGDNIVYHILYLDCTSKLVRLL---------E---DPILSSYCIKIIKALC--TSEARAAVAESNPCIDSI 629 (744)
Q Consensus 564 A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL---------~---~~~l~~~al~~L~nLa--~~e~~~~i~~~~g~V~~L 629 (744)
|+.+|.-|+.++.+...++...++..|+.+- . +..+..+|+.+|+|+- ++..|..+.+ .|+.+.+
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~-~~~~~~l 79 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVD-LGLAEKL 79 (446)
T ss_pred CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHH-cCcHHHH
Confidence 4567778888888878887777777777765 1 2467899999999999 8999988888 6889999
Q ss_pred HHHHcCC-----CHHHHHHHHHHHHHHhcCCHHHH-HHHHhCCcHHHHHHHh
Q 004582 630 AKLLETG-----TREEQEHIVDVLLSLCHEHTKYC-QLANTESIIQCVVDIS 675 (744)
Q Consensus 630 v~lL~~~-----s~~~~e~A~~~L~~Lc~~~~~~~-~~v~~~G~i~~Lv~Ll 675 (744)
++.|+.. +.++.=...++|.-++....... +++.+.+++..|+..+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L 131 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEAL 131 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHH
Confidence 9999876 67888888898888887666555 4555557777777655
No 173
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.44 E-value=5.8 Score=47.15 Aligned_cols=142 Identities=17% Similarity=0.224 Sum_probs=85.3
Q ss_pred hhhcccccCCHHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHh--cCccHHHHHHHHHHHhc---CHHHHHHH---
Q 004582 548 SIIKFLDTGTRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLL--EDPILSSYCIKIIKALC---TSEARAAV--- 619 (744)
Q Consensus 548 ~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL--~~~~l~~~al~~L~nLa---~~e~~~~i--- 619 (744)
.+++.|++.+..+|+.|+..++.|... .|...|+ ..|+.+| .+++.+..++.-+..++ .|+.+..|
T Consensus 354 tIleCL~DpD~SIkrralELs~~lvn~-~Nv~~mv-----~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtm 427 (866)
T KOG1062|consen 354 TILECLKDPDVSIKRRALELSYALVNE-SNVRVMV-----KELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTM 427 (866)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhcc-ccHHHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHH
Confidence 356667777778888888888777643 3444443 4567777 45678888888888888 45554322
Q ss_pred ---Hhh------CCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC------------------HHHHHHHHh--------
Q 004582 620 ---AES------NPCIDSIAKLLETGTREEQEHIVDVLLSLCHEH------------------TKYCQLANT-------- 664 (744)
Q Consensus 620 ---~~~------~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~------------------~~~~~~v~~-------- 664 (744)
... ..++..++.++.++.++..+.+..-|+.-...+ +++...+..
T Consensus 428 l~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~ 507 (866)
T KOG1062|consen 428 LKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPI 507 (866)
T ss_pred HHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCC
Confidence 221 357788899998876666666655555433222 112222222
Q ss_pred ----CCcHHHHHHHhhcC--CHHHHHHHHHHHHHhhh
Q 004582 665 ----ESIIQCVVDISVNG--NSRGKETAKELIMLLDH 695 (744)
Q Consensus 665 ----~G~i~~Lv~Ll~~~--s~~~r~~A~~lL~~L~~ 695 (744)
..++..|.+++.+. +...+..|..+|.-|+.
T Consensus 508 ~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSs 544 (866)
T KOG1062|consen 508 KVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSS 544 (866)
T ss_pred cCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 22466666666543 45666777777766653
No 174
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=90.88 E-value=0.22 Score=38.47 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=24.8
Q ss_pred ccccccccccCCCceec-CCCc--cccHHHHHHH-HccCCCCCCCCCCC
Q 004582 264 EFKCSISLRLMYDPVVI-ASGK--TFERVWIQKW-FNAGHTTCPKTHMR 308 (744)
Q Consensus 264 ~f~CPI~~~~m~dPV~~-~~G~--ty~r~~I~~w-~~~~~~~cP~t~~~ 308 (744)
.+.||||...|+-||-- .|-| .||-...-.. ...+.-.||.|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 36899999999999986 5665 4887554444 33455679999874
No 175
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=90.53 E-value=7.8 Score=47.13 Aligned_cols=235 Identities=16% Similarity=0.139 Sum_probs=137.7
Q ss_pred HhhCCChHHHHHHhccccc-CCCHHHHHHHHHHHHHHhcCCCCCcccccccchHHHHHhhc----c-------hhHHHHH
Q 004582 457 AFLNSYVKPLIKFLKDAHN-LCDAKAQKDGAEVLLAILSQSRDEMPLFHKDEICTFALFLD----S-------EIMEEAL 524 (744)
Q Consensus 457 i~~~G~I~~LV~lL~~~~~-~~d~~~q~~A~~~L~nLs~~~~nk~~iv~~Gai~~Lv~lL~----s-------~~~e~A~ 524 (744)
+.+.|++..++++|.+-.+ ..+.......+.+|...+.-..||..+++.|+++.|++.|. . ...+.-+
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 5568999999999976321 12344555566666666778889999999999999999874 2 1234555
Q ss_pred HHHHHhccChhhhHHHH-----hcC--------CchhhhcccccC----CHHHHHHHHHHHHHhcCCcchHHHHHhcCCc
Q 004582 525 EIIEVLSHQQNYASELV-----ASG--------IIPSIIKFLDTG----TRESRELAIKILCNLSSGDNIVYHILYLDCT 587 (744)
Q Consensus 525 ~~L~~Ls~~~~~k~~I~-----~~G--------~Ip~Lv~lL~s~----~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v 587 (744)
.++..|......-..-. ... -+..|++.+.+. +..+...-+.+|-+|+...+.+...+-.-.-
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~ 272 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFK 272 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHH
Confidence 55544433222111100 111 255566666543 4677888888888998887755544221111
Q ss_pred HhHHHHh-cC----cc---HHHHHHHHHHHhc-C---HHHHHHHHhhCCcHHHHHHHHcC--------CCHHHH------
Q 004582 588 SKLVRLL-ED----PI---LSSYCIKIIKALC-T---SEARAAVAESNPCIDSIAKLLET--------GTREEQ------ 641 (744)
Q Consensus 588 ~~Lv~lL-~~----~~---l~~~al~~L~nLa-~---~e~~~~i~~~~g~V~~Lv~lL~~--------~s~~~~------ 641 (744)
| .+++= .| ++ ..+..+.+..++- + ..-|..|++ .|++...++.|.. ++++-+
T Consensus 273 p-~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~-~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p 350 (802)
T PF13764_consen 273 P-YLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILE-SGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP 350 (802)
T ss_pred H-hcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-hhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence 1 11211 01 11 1233333444443 2 355778888 6999999998853 344443
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcC-CHHHHHHHHHHHHHhh
Q 004582 642 --EHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNG-NSRGKETAKELIMLLD 694 (744)
Q Consensus 642 --e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~-s~~~r~~A~~lL~~L~ 694 (744)
..++.+|..||.+.... +.....+++|.+..|-+-. +.++-..|-.+|..|.
T Consensus 351 sLp~iL~lL~GLa~gh~~t-Q~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~ 405 (802)
T PF13764_consen 351 SLPYILRLLRGLARGHEPT-QLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALA 405 (802)
T ss_pred cHHHHHHHHHHHHhcCHHH-HHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHh
Confidence 37899999999886544 4445666777776665433 3344445555554443
No 176
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=90.16 E-value=0.79 Score=41.03 Aligned_cols=61 Identities=18% Similarity=0.162 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhh--cCCHHHHHHHHHHHHHhhhcCCCCC
Q 004582 641 QEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISV--NGNSRGKETAKELIMLLDHCKEDNA 701 (744)
Q Consensus 641 ~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~--~~s~~~r~~A~~lL~~L~~~~~~~~ 701 (744)
|...+.+|.+||..+......+.+.|++|.++.... ..+|-+++.|...+++|-+....++
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ 65 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQ 65 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHH
Confidence 567889999999999999999999999999999764 6689999999999999986544443
No 177
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=90.15 E-value=0.49 Score=48.52 Aligned_cols=88 Identities=11% Similarity=0.172 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHhh------CCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHHH-HHHHhCCcHH
Q 004582 599 LSSYCIKIIKALC-TSEARAAVAES------NPCIDSIAKLLE-TGTREEQEHIVDVLLSLCHEHTKYC-QLANTESIIQ 669 (744)
Q Consensus 599 l~~~al~~L~nLa-~~e~~~~i~~~------~g~V~~Lv~lL~-~~s~~~~e~A~~~L~~Lc~~~~~~~-~~v~~~G~i~ 669 (744)
-++.|+.+|..|+ .+.|..-|..+ +..+..|+++|. .+++..||-|+.+|.+||..+...+ ....+.+.|.
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~ 219 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS 219 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence 3677888888888 66665554443 135666777774 5789999999999999999988766 5667888999
Q ss_pred HHHHHhhcCCHHHHHHH
Q 004582 670 CVVDISVNGNSRGKETA 686 (744)
Q Consensus 670 ~Lv~Ll~~~s~~~r~~A 686 (744)
.|+..+......++..+
T Consensus 220 ~Li~FiE~a~~~~~~~~ 236 (257)
T PF12031_consen 220 HLIAFIEDAEQNAHQVA 236 (257)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999988766555443
No 178
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=89.92 E-value=4.7 Score=43.10 Aligned_cols=227 Identities=14% Similarity=0.083 Sum_probs=142.6
Q ss_pred HHHHHhhc-CCCHHHHHHHHHHHHHHhhhcchhhHHH-hhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCC
Q 004582 422 LTSLSKLA-SRPWGSQCDAVENIKKLLKDNGQSRHLA-FLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDE 499 (744)
Q Consensus 422 ~~ll~~L~-s~~~e~q~~Al~~Lr~Lak~~~~~r~~i-~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk 499 (744)
.+++.+|. ..+.-.+.-|+..+..++-. ++.|..+ ++...-..++..|++.. ++.+.|-+.+-+++.++-+..-.
T Consensus 151 leyLgkl~Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~v--g~~qlQY~SL~~iw~lTf~~~~a 227 (432)
T COG5231 151 LEYLGKLSQLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYV--GVKQLQYNSLIIIWILTFSKECA 227 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhh--hhhhhHHHHHHHHHHHhcCHHHH
Confidence 34444443 23444677788888888764 5555544 45556677888888754 67899999999999987654433
Q ss_pred ccccc-ccchHHHHHhhcchhH----HHHHHHHHHhccCh--hhhHHHHhcCCchhhhcccccC---CHHHHHHHH---H
Q 004582 500 MPLFH-KDEICTFALFLDSEIM----EEALEIIEVLSHQQ--NYASELVASGIIPSIIKFLDTG---TRESRELAI---K 566 (744)
Q Consensus 500 ~~iv~-~Gai~~Lv~lL~s~~~----e~A~~~L~~Ls~~~--~~k~~I~~~G~Ip~Lv~lL~s~---~~~~k~~A~---~ 566 (744)
..+-+ -+.+..|+.+.+.... ..+++++.|+.... ..-....-.|-+.+-+++|..+ +++.+..-- .
T Consensus 228 qdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s 307 (432)
T COG5231 228 QDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRS 307 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 11111 2456666666665543 46888998887622 2222333345455566666442 222221110 0
Q ss_pred HH----HHhcC------------------------CcchHHHHHhc--CCcHhHHHHhcC--cc-HHHHHHHHHHHhc--
Q 004582 567 IL----CNLSS------------------------GDNIVYHILYL--DCTSKLVRLLED--PI-LSSYCIKIIKALC-- 611 (744)
Q Consensus 567 aL----~nLs~------------------------~~~n~~~iv~a--G~v~~Lv~lL~~--~~-l~~~al~~L~nLa-- 611 (744)
.| ..|+. .+.|..++.+- .++..|..+|+. ++ ...-|+.-+..+.
T Consensus 308 ~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~ 387 (432)
T COG5231 308 RLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRA 387 (432)
T ss_pred HHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHh
Confidence 00 01111 12355666543 577788888843 33 5566777777777
Q ss_pred CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Q 004582 612 TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLC 652 (744)
Q Consensus 612 ~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc 652 (744)
.||++.-+... |+=..+++++.+.+++++=+|+.++..+-
T Consensus 388 ~PE~~~vl~Ky-g~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 388 SPEINAVLSKY-GVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred CchHHHHHHHh-hhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 89999999995 88999999999999999999999987653
No 179
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.76 E-value=1.1 Score=51.78 Aligned_cols=239 Identities=15% Similarity=0.139 Sum_probs=116.5
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCC------
Q 004582 424 SLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSR------ 497 (744)
Q Consensus 424 ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~------ 497 (744)
++..-.+.+..+|.+|++.|-.|... -.-- .-.....+++|++ .+..++.+|+.++.-...--.
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg-~kL~-----~~~Y~~A~~~lsD----~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEG-FKLS-----KACYSRAVKHLSD----DYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhccc-cccc-----HHHHHHHHHHhcc----hHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 33334566888899999998888652 2111 1234567888988 678899999887777644210
Q ss_pred -CCcccccccchHHHHHhhcch---hHHHHHHHH---HHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHH-
Q 004582 498 -DEMPLFHKDEICTFALFLDSE---IMEEALEII---EVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILC- 569 (744)
Q Consensus 498 -nk~~iv~~Gai~~Lv~lL~s~---~~e~A~~~L---~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~- 569 (744)
+... ....++..+.+.++.. +.-.|+.+| .+.|..- -.+-.+.. +..-|+. ........+.|+
T Consensus 273 ~~e~k-l~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~--i~QTLdKK----lms~lRR--kr~ahkrpk~l~s 343 (823)
T KOG2259|consen 273 SEEEK-LKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEI--IQQTLDKK----LMSRLRR--KRTAHKRPKALYS 343 (823)
T ss_pred hhhhh-hHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHH--HHHHHHHH----Hhhhhhh--hhhcccchHHHHh
Confidence 1111 1123444444444332 122233333 2222210 00000000 0000000 000000111111
Q ss_pred Hh--cC------------CcchHHHHHhcCCcHhHHHHhcCc--cHHHHHHHHHHHhc-CHHHHHHHHhhCCcHHHHHHH
Q 004582 570 NL--SS------------GDNIVYHILYLDCTSKLVRLLEDP--ILSSYCIKIIKALC-TSEARAAVAESNPCIDSIAKL 632 (744)
Q Consensus 570 nL--s~------------~~~n~~~iv~aG~v~~Lv~lL~~~--~l~~~al~~L~nLa-~~e~~~~i~~~~g~V~~Lv~l 632 (744)
+. |+ .++.-..|+..|+--+++.-|.|+ ++++.|+..+..|+ +.-+-. ..+++-||++
T Consensus 344 ~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA-----~~aldfLvDM 418 (823)
T KOG2259|consen 344 SGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA-----VRALDFLVDM 418 (823)
T ss_pred cCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHH
Confidence 11 00 122233456666666666666664 56677777777777 321111 1246667777
Q ss_pred HcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 004582 633 LETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIML 692 (744)
Q Consensus 633 L~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~ 692 (744)
+......+|..|+.+|..|+.+ ..+++.-++.+.+-+.+.+.++|+.+-.+|.+
T Consensus 419 fNDE~~~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 419 FNDEIEVVRLKAIFALTMISVH------LAIREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred hccHHHHHHHHHHHHHHHHHHH------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 7666667777777777766543 23334445555555666666666655555543
No 180
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=89.72 E-value=3.5 Score=44.67 Aligned_cols=146 Identities=19% Similarity=0.240 Sum_probs=83.3
Q ss_pred CchhhhcccccCCHHHHHHHHHHHHHhcCC---cchHHHHHhcCCcHhHHHHhcCc----cHHHHHHHHHHHhc-----C
Q 004582 545 IIPSIIKFLDTGTRESRELAIKILCNLSSG---DNIVYHILYLDCTSKLVRLLEDP----ILSSYCIKIIKALC-----T 612 (744)
Q Consensus 545 ~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~---~~n~~~iv~aG~v~~Lv~lL~~~----~l~~~al~~L~nLa-----~ 612 (744)
.++.+.+.++.|+.+-+..|+.++.-|+.. .+....++ ....|.|..++.++ .++..|+.+|+.++ .
T Consensus 87 L~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~-~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d 165 (309)
T PF05004_consen 87 LLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF-EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSD 165 (309)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH-HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCC
Confidence 466777778888776667777766665544 23334443 36788888888764 23455565666665 2
Q ss_pred HHHHHHHHhhCCcHHHHHH--HHcC-C---------CHHHHHHHHHHHHHHhcC-CHHHHHHHHhCCcHHHHHHHhhcCC
Q 004582 613 SEARAAVAESNPCIDSIAK--LLET-G---------TREEQEHIVDVLLSLCHE-HTKYCQLANTESIIQCVVDISVNGN 679 (744)
Q Consensus 613 ~e~~~~i~~~~g~V~~Lv~--lL~~-~---------s~~~~e~A~~~L~~Lc~~-~~~~~~~v~~~G~i~~Lv~Ll~~~s 679 (744)
.+.....++. +..+.. .++. + ++.+.-.|+..-.-|... +..... -.-...+|.|+.++.+.+
T Consensus 166 ~~~~~~~~~~---le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~-~~~~~~~~~l~~lL~s~d 241 (309)
T PF05004_consen 166 EEETEELMES---LESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLE-DLLEEALPALSELLDSDD 241 (309)
T ss_pred hhHHHHHHHH---HHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHhcCCC
Confidence 2333322221 232211 1221 1 234555444433323222 222122 222446899999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 004582 680 SRGKETAKELIMLLDH 695 (744)
Q Consensus 680 ~~~r~~A~~lL~~L~~ 695 (744)
..+|..|...|-+|-+
T Consensus 242 ~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 242 VDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987754
No 181
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=89.71 E-value=0.38 Score=37.04 Aligned_cols=40 Identities=28% Similarity=0.537 Sum_probs=31.4
Q ss_pred cccccc--cCCCceecCCC-----ccccHHHHHHHHcc-CCCCCCCCC
Q 004582 267 CSISLR--LMYDPVVIASG-----KTFERVWIQKWFNA-GHTTCPKTH 306 (744)
Q Consensus 267 CPI~~~--~m~dPV~~~~G-----~ty~r~~I~~w~~~-~~~~cP~t~ 306 (744)
|-||++ --.+|.+.||. +-+=+.|+.+|+.. +..+||.|+
T Consensus 2 CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 2 CRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred ccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 667764 45778888875 67899999999975 467899985
No 182
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.57 E-value=0.17 Score=55.96 Aligned_cols=35 Identities=17% Similarity=0.405 Sum_probs=29.7
Q ss_pred ceecCCCccccHHHHHHHHccCCCCCCCCCCCCCC
Q 004582 277 PVVIASGKTFERVWIQKWFNAGHTTCPKTHMRLDN 311 (744)
Q Consensus 277 PV~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~ 311 (744)
=.++||.|.|-|.|+++|.+.-.-.||.|+.+|+.
T Consensus 601 Ym~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 601 YMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 44569999999999999998545689999999864
No 183
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.51 E-value=7.6 Score=48.08 Aligned_cols=206 Identities=15% Similarity=0.163 Sum_probs=120.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCcccccccchHHHHHhhcch-------hHHHHHHHH---HHhccChhhhHHHHhcCCc
Q 004582 477 CDAKAQKDGAEVLLAILSQSRDEMPLFHKDEICTFALFLDSE-------IMEEALEII---EVLSHQQNYASELVASGII 546 (744)
Q Consensus 477 ~d~~~q~~A~~~L~nLs~~~~nk~~iv~~Gai~~Lv~lL~s~-------~~e~A~~~L---~~Ls~~~~~k~~I~~~G~I 546 (744)
.+..+|+.+-.+|..++..+.... .++ .-+..+-+.|..+ ....++.+| ..+.. .+....+. ..|
T Consensus 666 ~~~~vQkK~yrlL~~l~~~~s~~~-~~~-q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~-~e~~~~i~--k~I 740 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSSPSGEG-LVE-QRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS-AEHCDLIP--KLI 740 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcCCchhh-HHH-HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc-HHHHHHHH--HHH
Confidence 478899999999999988622211 111 1112222222111 222334443 33333 23334442 345
Q ss_pred hhhhcccccCCHHHHHHHHHHHHHhcCCcchHHHHHhcC------CcHhHHHHhcCc---c-HHHHH--HHHHHHhc-CH
Q 004582 547 PSIIKFLDTGTRESRELAIKILCNLSSGDNIVYHILYLD------CTSKLVRLLEDP---I-LSSYC--IKIIKALC-TS 613 (744)
Q Consensus 547 p~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~iv~aG------~v~~Lv~lL~~~---~-l~~~a--l~~L~nLa-~~ 613 (744)
|-++-.++..+...+++|..+|+.+.. .....+.| .|...+.++..+ + ....| +-++..+. ..
T Consensus 741 ~EvIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~ 816 (1176)
T KOG1248|consen 741 PEVILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEF 816 (1176)
T ss_pred HHHHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 555555588888999999999998873 11112222 444555555332 2 22122 33333333 11
Q ss_pred HH--HHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHH
Q 004582 614 EA--RAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIM 691 (744)
Q Consensus 614 e~--~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~ 691 (744)
.+ -...+ .+.+..+...|..+++.+...|++.+-.++..-+..+-.-..+-++|.+..++.+.+..++.+...+|.
T Consensus 817 ~~~ld~~~l--~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Lle 894 (1176)
T KOG1248|consen 817 KNILDDETL--EKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLE 894 (1176)
T ss_pred hccccHHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 11 11112 244555555667899999999999999999887765555555568999999999999999988888886
Q ss_pred Hh
Q 004582 692 LL 693 (744)
Q Consensus 692 ~L 693 (744)
.|
T Consensus 895 kL 896 (1176)
T KOG1248|consen 895 KL 896 (1176)
T ss_pred HH
Confidence 65
No 184
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=89.30 E-value=3.3 Score=45.84 Aligned_cols=238 Identities=18% Similarity=0.182 Sum_probs=129.4
Q ss_pred HHHHHhhcC-CCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCc
Q 004582 422 LTSLSKLAS-RPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEM 500 (744)
Q Consensus 422 ~~ll~~L~s-~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~ 500 (744)
..++..|.. .+...|+.++..|..-+.+ ++-|..+...|.+..+++.+.+.. .++..--.++.+++-++.+..+-.
T Consensus 24 ~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~--~d~~~~l~~a~i~~~l~~d~~~~~ 100 (361)
T PF07814_consen 24 EYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAP--DDDILALATAAILYVLSRDGLNMH 100 (361)
T ss_pred HHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhcccc--chHHHHHHHHHHHHHHccCCcchh
Confidence 346666763 3568899999988888774 677888899999999999996631 233333344444444444444444
Q ss_pred ccccccchHHHHHhhcch----hHHHHH-HHHHHhccChhh----hHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHh
Q 004582 501 PLFHKDEICTFALFLDSE----IMEEAL-EIIEVLSHQQNY----ASELVASGIIPSIIKFLDTGTRESRELAIKILCNL 571 (744)
Q Consensus 501 ~iv~~Gai~~Lv~lL~s~----~~e~A~-~~L~~Ls~~~~~----k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nL 571 (744)
.+...+.+..++.++... .....- .-=.+++...+. ...+...+..-.-. ......-+..|+.+|-.+
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~---~~~~lsp~~lall~le~l 177 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSP---KPPELSPQTLALLALESL 177 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhcccccccc---CCcccccccHHHHHHHHH
Confidence 444566777778887611 000000 000111111110 01111111100000 011122334444444444
Q ss_pred c---------------CCcchHHHHHhcCCcHhHHHHhcC----c--------------cHHHHHHHHHHHhc--CHHHH
Q 004582 572 S---------------SGDNIVYHILYLDCTSKLVRLLED----P--------------ILSSYCIKIIKALC--TSEAR 616 (744)
Q Consensus 572 s---------------~~~~n~~~iv~aG~v~~Lv~lL~~----~--------------~l~~~al~~L~nLa--~~e~~ 616 (744)
+ ..+.-|..+.+.|++..+++++.+ . .....|+.+|-+.+ +.++.
T Consensus 178 ~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq 257 (361)
T PF07814_consen 178 VRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQ 257 (361)
T ss_pred HHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccch
Confidence 2 112235667778999999999841 1 13578999999998 66776
Q ss_pred HHHHhhC-CcHHHHHHH-HcC---CCHHHHHHHHHHHHHHhcCCHHHHHHHHhC
Q 004582 617 AAVAESN-PCIDSIAKL-LET---GTREEQEHIVDVLLSLCHEHTKYCQLANTE 665 (744)
Q Consensus 617 ~~i~~~~-g~V~~Lv~l-L~~---~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~ 665 (744)
....... +.++.+... +.. ..+.....++++|.|++.+++..+......
T Consensus 258 ~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~ 311 (361)
T PF07814_consen 258 SYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASP 311 (361)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhh
Confidence 6665432 233333332 222 233446789999999998886555444433
No 185
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=88.99 E-value=2.7 Score=49.32 Aligned_cols=252 Identities=12% Similarity=0.101 Sum_probs=150.6
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHHhhhcch---hhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCC
Q 004582 420 TDLTSLSKLASRPWGSQCDAVENIKKLLKDNGQ---SRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQS 496 (744)
Q Consensus 420 ~~~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~---~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~ 496 (744)
.+|.+...|.+....+|...+..+..++..+++ .|..|.- -=.|+.+|++ .+..++++|+..+..++.-
T Consensus 884 llPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRI---cfeLlelLka----hkK~iRRaa~nTfG~Iaka- 955 (1172)
T KOG0213|consen 884 LLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRI---CFELLELLKA----HKKEIRRAAVNTFGYIAKA- 955 (1172)
T ss_pred hcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHH---HHHHHHHHHH----HHHHHHHHHHhhhhHHHHh-
Confidence 455666777888889999999999999987765 3444432 1246788887 6889999999998888651
Q ss_pred CCCcccccccchHHHHHhhcchhH-HHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCCc
Q 004582 497 RDEMPLFHKDEICTFALFLDSEIM-EEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSGD 575 (744)
Q Consensus 497 ~nk~~iv~~Gai~~Lv~lL~s~~~-e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~ 575 (744)
+--.+++..|+.-|+.... ...+.++. ++...+...- -..+|.|..=-..+...++.-.+++|+.+-..-
T Consensus 956 -----IGPqdVLatLlnnLkvqeRq~RvcTtva-IaIVaE~c~p---FtVLPalmneYrtPe~nVQnGVLkalsf~Feyi 1026 (1172)
T KOG0213|consen 956 -----IGPQDVLATLLNNLKVQERQNRVCTTVA-IAIVAETCGP---FTVLPALMNEYRTPEANVQNGVLKALSFMFEYI 1026 (1172)
T ss_pred -----cCHHHHHHHHHhcchHHHHHhchhhhhh-hhhhhhhcCc---hhhhHHHHhhccCchhHHHHhHHHHHHHHHHHH
Confidence 1111233333333333322 22333332 2222222211 135677776666677778888888887776443
Q ss_pred chHHHHHhcCCcHhHHHHhcCccH--HHHHHHHHHHhc-CHHHHHHHHhhCCcHHHHHHHHc-------CCCHHHHHHHH
Q 004582 576 NIVYHILYLDCTSKLVRLLEDPIL--SSYCIKIIKALC-TSEARAAVAESNPCIDSIAKLLE-------TGTREEQEHIV 645 (744)
Q Consensus 576 ~n~~~iv~aG~v~~Lv~lL~~~~l--~~~al~~L~nLa-~~e~~~~i~~~~g~V~~Lv~lL~-------~~s~~~~e~A~ 645 (744)
.+...=.-.-+.|.|-+.|.|.+. +.-|+.++.+|+ +..| -|+.+.+++||. ..+|.+++.-.
T Consensus 1027 gemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g-------~g~eda~iHLLN~iWpNIle~sPhviqa~~ 1099 (1172)
T KOG0213|consen 1027 GEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPG-------TGCEDALIHLLNLIWPNILETSPHVIQAFD 1099 (1172)
T ss_pred HHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCC-------cCcHHHHHHHHHHhhhhhcCCChHHHHHHH
Confidence 222111112344555555655443 678889999999 6433 478888888886 36777777665
Q ss_pred HHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcCCCCCc
Q 004582 646 DVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLDHCKEDNAS 702 (744)
Q Consensus 646 ~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~~~~~~~~~ 702 (744)
.++..+... +.-...+..+++=+.+.+..+|+.=..++..+--..++...
T Consensus 1100 e~~eg~r~~-------Lg~~~~~~Y~~QGLFHParkVR~~yw~vyn~my~~~~dalv 1149 (1172)
T KOG0213|consen 1100 EAMEGLRVA-------LGPQAMLKYCLQGLFHPARKVRKRYWTVYNSMYHGSQDALV 1149 (1172)
T ss_pred HHHHHHHHH-------hchHHHHHHHHHhccCcHHHHHHHHHHHHHhHhhcccchhh
Confidence 555544311 11111345555566778888888777777777655555443
No 186
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=88.87 E-value=5.1 Score=42.83 Aligned_cols=218 Identities=13% Similarity=0.124 Sum_probs=142.2
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCcc-cccccchHHHHHhhcchh-----HHHHHHHHHHhccChhhhHHHHh-cCCchhh
Q 004582 477 CDAKAQKDGAEVLLAILSQSRDEMP-LFHKDEICTFALFLDSEI-----MEEALEIIEVLSHQQNYASELVA-SGIIPSI 549 (744)
Q Consensus 477 ~d~~~q~~A~~~L~nLs~~~~nk~~-iv~~Gai~~Lv~lL~s~~-----~e~A~~~L~~Ls~~~~~k~~I~~-~G~Ip~L 549 (744)
-++-++--|+.+|.++....+.|.. .++.-.-..+++++.+.. +-+.+-+++.|+...+....|-. ...|-.|
T Consensus 161 i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dl 240 (432)
T COG5231 161 IDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 3556777888888888776554433 334455667777776532 35788888888887777644432 4567778
Q ss_pred hcccccCCH-HHHHHHHHHHHHhcCCc--chHHHHHhcCCcHhHHHHhcC-----ccHHH---HHHHHH----HH-----
Q 004582 550 IKFLDTGTR-ESRELAIKILCNLSSGD--NIVYHILYLDCTSKLVRLLED-----PILSS---YCIKII----KA----- 609 (744)
Q Consensus 550 v~lL~s~~~-~~k~~A~~aL~nLs~~~--~n~~~iv~aG~v~~Lv~lL~~-----~~l~~---~al~~L----~n----- 609 (744)
+.+.+.... .+-+.+++++.|+..-. +....+.-.|-+.+-+++|.. ++++. .--..| ..
T Consensus 241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD 320 (432)
T COG5231 241 IAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFD 320 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 888876543 47788899999988622 444455666767777777733 23211 111111 11
Q ss_pred ----------hc-CH---------HHHHHHHhhC-CcHHHHHHHHcCCCHH-HHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 004582 610 ----------LC-TS---------EARAAVAESN-PCIDSIAKLLETGTRE-EQEHIVDVLLSLCHEHTKYCQLANTESI 667 (744)
Q Consensus 610 ----------La-~~---------e~~~~i~~~~-g~V~~Lv~lL~~~s~~-~~e~A~~~L~~Lc~~~~~~~~~v~~~G~ 667 (744)
|+ +| .|...+.+.+ ..+..|.++|....+. .-.-|+.-+.++....++...++...|+
T Consensus 321 ~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~ 400 (432)
T COG5231 321 NYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGV 400 (432)
T ss_pred HHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhh
Confidence 11 11 2333343321 3566778888755444 3445666667777777888899999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 004582 668 IQCVVDISVNGNSRGKETAKELIMLLD 694 (744)
Q Consensus 668 i~~Lv~Ll~~~s~~~r~~A~~lL~~L~ 694 (744)
=..+.+++.+.++++|=.|.++++.+-
T Consensus 401 k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 401 KEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 999999999999999999999987653
No 187
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=88.83 E-value=6 Score=41.40 Aligned_cols=139 Identities=14% Similarity=0.080 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcC-------ccHHHHHHHHHHHhc---CHHHHHHHHhhCCcHHHH
Q 004582 560 SRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLED-------PILSSYCIKIIKALC---TSEARAAVAESNPCIDSI 629 (744)
Q Consensus 560 ~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~-------~~l~~~al~~L~nLa---~~e~~~~i~~~~g~V~~L 629 (744)
-.-+|+..|..++++++.+..++++.+.-.|..+|.. +.++-.++++++.|. +++...-+.+ .+.||..
T Consensus 66 RVcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~-tEiiplc 144 (262)
T PF04078_consen 66 RVCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQ-TEIIPLC 144 (262)
T ss_dssp HHHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHC-TTHHHHH
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHh-hchHHHH
Confidence 4457788888999999999999999999999999943 246778899999999 4566666777 5999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH--------HHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcCCC
Q 004582 630 AKLLETGTREEQEHIVDVLLSLCHEHTKYCQ--------LANTESIIQCVVDISVNGNSRGKETAKELIMLLDHCKED 699 (744)
Q Consensus 630 v~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~--------~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~~~~~~ 699 (744)
++.|+.|+...|--|..++..+-.++.+..- ..+....-..+..+....++|.-+.....-..|++....
T Consensus 145 Lr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpra 222 (262)
T PF04078_consen 145 LRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRA 222 (262)
T ss_dssp HHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHH
Confidence 9999999999999999998877655432110 011111122333456677888888888777777755443
No 188
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=88.33 E-value=13 Score=43.15 Aligned_cols=252 Identities=15% Similarity=0.097 Sum_probs=139.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcc--hhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCC-CC
Q 004582 423 TSLSKLASRPWGSQCDAVENIKKLLKDNG--QSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSR-DE 499 (744)
Q Consensus 423 ~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~--~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~-nk 499 (744)
.++..|.+.++++|.+|+.....+++-=. .--..+...|.| |..-|.. .++++.-.-+.++..+.+..+ .+
T Consensus 608 tiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge----~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 608 TILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGE----DYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCc----ccHHHHHHHHHHHHHHhhhhcccc
Confidence 57788899999999999998888875311 111233444432 3444544 577777666666666654332 33
Q ss_pred cccccccchHHHHHhhcch---hHHHHHHHHHHhccChhhhHHHHh-cCCchhhhcccccCCHHHHHHHHHHHHHhcCCc
Q 004582 500 MPLFHKDEICTFALFLDSE---IMEEALEIIEVLSHQQNYASELVA-SGIIPSIIKFLDTGTRESRELAIKILCNLSSGD 575 (744)
Q Consensus 500 ~~iv~~Gai~~Lv~lL~s~---~~e~A~~~L~~Ls~~~~~k~~I~~-~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~ 575 (744)
.+---.|.+|.|.-+|.+. +.++..+.+.-++.......-..+ -..--.|+++|++.+.++|.+|..++..+|..-
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai 761 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI 761 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence 4444568899999999764 334555555544443322111111 112335888999999999999999988777432
Q ss_pred chHHHHHhcCCcHhHHHHhcCccHHHHHHHHHHHhcCHHHHHHHHhhCCcHHHHHHHH---cCCCHHHHHHHHHHHHHHh
Q 004582 576 NIVYHILYLDCTSKLVRLLEDPILSSYCIKIIKALCTSEARAAVAESNPCIDSIAKLL---ETGTREEQEHIVDVLLSLC 652 (744)
Q Consensus 576 ~n~~~iv~aG~v~~Lv~lL~~~~l~~~al~~L~nLa~~e~~~~i~~~~g~V~~Lv~lL---~~~s~~~~e~A~~~L~~Lc 652 (744)
|--..|.-+|.+-.+.+.-..+-..++ ..-+.+..|-...|=.++ .+....+|.-.+.++..+-
T Consensus 762 ---------GPqdvL~~LlnnLkvqeRq~Rvctsva----I~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmF 828 (975)
T COG5181 762 ---------GPQDVLDILLNNLKVQERQQRVCTSVA----ISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMF 828 (975)
T ss_pred ---------CHHHHHHHHHhcchHHHHHhhhhhhhh----hhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHH
Confidence 222233333433222222111111111 111223344333333344 3455556665555444432
Q ss_pred cCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 004582 653 HEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLD 694 (744)
Q Consensus 653 ~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~ 694 (744)
..- .+...-.-..+.|.|-+-+.+.++-.|.-|..++++|.
T Consensus 829 eyi-g~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~ 869 (975)
T COG5181 829 EYI-GQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLV 869 (975)
T ss_pred HHH-HHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHh
Confidence 110 11111112235677777888888888999999999887
No 189
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=87.86 E-value=0.33 Score=50.63 Aligned_cols=30 Identities=20% Similarity=0.485 Sum_probs=28.3
Q ss_pred CCCccccHHHHHHHHccCCCCCCCCCCCCC
Q 004582 281 ASGKTFERVWIQKWFNAGHTTCPKTHMRLD 310 (744)
Q Consensus 281 ~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~ 310 (744)
+|||+-|-+|.-+-|..|...||.|+.+|-
T Consensus 22 ~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred cccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 899999999999999999999999998874
No 190
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.81 E-value=24 Score=41.72 Aligned_cols=71 Identities=6% Similarity=0.133 Sum_probs=40.2
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhh-cCCHHHHHHHHHHHHHhhhcCC
Q 004582 625 CIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISV-NGNSRGKETAKELIMLLDHCKE 698 (744)
Q Consensus 625 ~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~-~~s~~~r~~A~~lL~~L~~~~~ 698 (744)
++..|-++|.+..+.+|--|+.-+..||+.... ...+... ...++..++ ..+..+|++|..||..|.+..+
T Consensus 330 ~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s-~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~N 401 (938)
T KOG1077|consen 330 AVNQLGQFLSHRETNIRYLALESMCKLASSEFS-IDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSN 401 (938)
T ss_pred HHHHHHHHhhcccccchhhhHHHHHHHHhccch-HHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhh
Confidence 366666666666666666666666666655322 2222222 444455554 4455666677777766665443
No 191
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=87.78 E-value=0.99 Score=41.52 Aligned_cols=70 Identities=9% Similarity=0.050 Sum_probs=58.3
Q ss_pred CcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 004582 624 PCIDSIAKLLE-TGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLL 693 (744)
Q Consensus 624 g~V~~Lv~lL~-~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L 693 (744)
..+..|+++|. +.++.+..-|+.-|..++..-+..+..+.+.|+-..+.+|+.+.++++|..|..+++.|
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 36778999994 45778888888889999988777788889999999999999999999999999998765
No 192
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=87.60 E-value=0.49 Score=54.07 Aligned_cols=149 Identities=16% Similarity=0.178 Sum_probs=97.1
Q ss_pred CchhhhcccccCCHHHHHHHHHHHHHhcCCcchHH---HHHhcCCcHhHHHHhc--CccHHHHHHHHHHHhc-CHHHHHH
Q 004582 545 IIPSIIKFLDTGTRESRELAIKILCNLSSGDNIVY---HILYLDCTSKLVRLLE--DPILSSYCIKIIKALC-TSEARAA 618 (744)
Q Consensus 545 ~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~---~iv~aG~v~~Lv~lL~--~~~l~~~al~~L~nLa-~~e~~~~ 618 (744)
.+..++++|++..+.+|..|+.....|+..-.++. .+...|.| |.+-|. .+++.-..+.++..+. ...-+..
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 34456778899999999999888777764433322 23334433 344442 2455554444444444 1111110
Q ss_pred HHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 004582 619 VAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLDH 695 (744)
Q Consensus 619 i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~~ 695 (744)
---..|.+|.|..+|++...+++++.+..+..+|.+++++...-.=..+-=-|++++.+.+.++|+.|...+-++++
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 00114889999999999999999999999999998877643222212233458889999999999999988777654
No 193
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=87.58 E-value=1.1 Score=39.94 Aligned_cols=66 Identities=24% Similarity=0.303 Sum_probs=49.6
Q ss_pred cCCchhhhcccccCCHHHHHHHHHHHHHhcCCcchHHHHHh--cCCcHhHHHHhcCcc-HHHHHHHHHHHh
Q 004582 543 SGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIVYHILY--LDCTSKLVRLLEDPI-LSSYCIKIIKAL 610 (744)
Q Consensus 543 ~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~iv~--aG~v~~Lv~lL~~~~-l~~~al~~L~nL 610 (744)
.-.+|+++..+.+.+.++|..|+.+|+|++.... ..++. ..+++.|.+++.|++ -++.++..|-+|
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~l 94 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADPDENVRSAAELLDRL 94 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Confidence 3468999999999999999999999999986543 33332 477888888887753 355666666554
No 194
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=87.43 E-value=0.17 Score=42.16 Aligned_cols=47 Identities=28% Similarity=0.654 Sum_probs=23.0
Q ss_pred ccccccccccCC-C---ceec----CCCccccHHHHHHHHcc--CC--------CCCCCCCCCCC
Q 004582 264 EFKCSISLRLMY-D---PVVI----ASGKTFERVWIQKWFNA--GH--------TTCPKTHMRLD 310 (744)
Q Consensus 264 ~f~CPI~~~~m~-d---PV~~----~~G~ty~r~~I~~w~~~--~~--------~~cP~t~~~l~ 310 (744)
+..|+||....- + |+++ .||++|=..|+.+||.. +. .+||.|++++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 467999987654 2 5555 68999999999999963 21 35999988764
No 195
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=87.14 E-value=32 Score=39.70 Aligned_cols=252 Identities=10% Similarity=0.121 Sum_probs=145.3
Q ss_pred CHHHHHHHHHHHHHHhhhcchhhHHHhhCCC-hHHHH-HHhcccccCCCHHHHHHHHHHHHHHhc-------CCCCCccc
Q 004582 432 PWGSQCDAVENIKKLLKDNGQSRHLAFLNSY-VKPLI-KFLKDAHNLCDAKAQKDGAEVLLAILS-------QSRDEMPL 502 (744)
Q Consensus 432 ~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~-I~~LV-~lL~~~~~~~d~~~q~~A~~~L~nLs~-------~~~nk~~i 502 (744)
....+++++..+...+..-+. ...+...+. +-.+| .-++. ..+..++-+|+.+|.+-+. .+.+|.-+
T Consensus 147 p~~~k~~sl~~~gy~ces~~P-e~li~~sN~il~aiv~ga~k~---et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~ 222 (858)
T COG5215 147 PVSGKCESLGICGYHCESEAP-EDLIQMSNVILFAIVMGALKN---ETTSAVRLAALKALMDSLMFVQGNFCYEEERNYF 222 (858)
T ss_pred chHhHHHHHHHHHHHhhccCH-HHHHHHhhHHHHHHHHhhccc---CchHHHHHHHHHHHHHHHHHHHHhhcchhhhchh
Confidence 457788999999888754222 223332222 22222 34444 3678889999999988322 22222211
Q ss_pred ccccchHHHHHhhcc---hhHHHHHHHHHHhcc-ChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCCc---
Q 004582 503 FHKDEICTFALFLDS---EIMEEALEIIEVLSH-QQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSGD--- 575 (744)
Q Consensus 503 v~~Gai~~Lv~lL~s---~~~e~A~~~L~~Ls~-~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~--- 575 (744)
+. ..++.-.. +.+..|.++|-.+-. ....-..+++..........+++.+.++...|...-..++...
T Consensus 223 mq-----vvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~ 297 (858)
T COG5215 223 MQ-----VVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDG 297 (858)
T ss_pred he-----eeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhh
Confidence 10 11111111 123345555533322 2222334444444445566777888877777765443333211
Q ss_pred ------------chHHHH--HhcCCcHhHHHHhcC--c-------cHHHHHHHHHHHhc-CHHHHHHHHhhCCcHHHHHH
Q 004582 576 ------------NIVYHI--LYLDCTSKLVRLLED--P-------ILSSYCIKIIKALC-TSEARAAVAESNPCIDSIAK 631 (744)
Q Consensus 576 ------------~n~~~i--v~aG~v~~Lv~lL~~--~-------~l~~~al~~L~nLa-~~e~~~~i~~~~g~V~~Lv~ 631 (744)
.|.... .-++++|.|+.+|.. + +....|..+|...+ .. ...|++ .++.-+-+
T Consensus 298 ~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~--gd~i~~--pVl~FvEq 373 (858)
T COG5215 298 EMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK--GDKIMR--PVLGFVEQ 373 (858)
T ss_pred HHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh--hhHhHH--HHHHHHHH
Confidence 122222 224689999999943 1 24455555555555 21 112333 12222223
Q ss_pred HHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 004582 632 LLETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLDHC 696 (744)
Q Consensus 632 lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~~~ 696 (744)
-+++.+-..+|.|+.++.++-.+....+..-.-..++|.+..++.+..--++..+++.+-.+.++
T Consensus 374 ni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 374 NIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred hccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 45678889999999999999877666666666778899999999988889999999999888765
No 196
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=87.14 E-value=0.58 Score=47.23 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=46.4
Q ss_pred ccccccccccCCCceec-CCCccccHHHHHHHHc-cCCCCCCC--CCCCCCCCCCcccHHH
Q 004582 264 EFKCSISLRLMYDPVVI-ASGKTFERVWIQKWFN-AGHTTCPK--THMRLDNVSVTPNVAI 320 (744)
Q Consensus 264 ~f~CPI~~~~m~dPV~~-~~G~ty~r~~I~~w~~-~~~~~cP~--t~~~l~~~~l~pn~~l 320 (744)
+.+|||+++-..-|++. .|.|.|||..|.+.++ .....||. |.|.+....++-++.|
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~Il 249 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHIL 249 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHH
Confidence 46899999999999886 7999999999999997 34567997 7677766666666655
No 197
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.04 E-value=2.9 Score=48.57 Aligned_cols=202 Identities=14% Similarity=0.167 Sum_probs=121.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcch------hhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCC
Q 004582 423 TSLSKLASRPWGSQCDAVENIKKLLKDNGQ------SRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQS 496 (744)
Q Consensus 423 ~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~------~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~ 496 (744)
.....+.+...++|..|+..+..+.+..+. +...+. ..++..+.+.+++ .+..++..|+.+|..+-.-.
T Consensus 238 ~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~-D~aF~~vC~~v~D----~sl~VRV~AaK~lG~~~~vS 312 (823)
T KOG2259|consen 238 RAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLK-DAAFSSVCRAVRD----RSLSVRVEAAKALGEFEQVS 312 (823)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhH-HHHHHHHHHHHhc----CceeeeehHHHHhchHHHhH
Confidence 455666777788898998888888765421 111111 2345555556655 45555555655554442100
Q ss_pred CCCcccccccchHHHHHhhcchh----------HHHHHHHHHHh--c------------cChhhhHHHHhcCCchhhhcc
Q 004582 497 RDEMPLFHKDEICTFALFLDSEI----------MEEALEIIEVL--S------------HQQNYASELVASGIIPSIIKF 552 (744)
Q Consensus 497 ~nk~~iv~~Gai~~Lv~lL~s~~----------~e~A~~~L~~L--s------------~~~~~k~~I~~~G~Ip~Lv~l 552 (744)
+ ..+-+.|+... .+.....+.+. | ..++.-..|..+|+...+|+-
T Consensus 313 e-----------e~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhG 381 (823)
T KOG2259|consen 313 E-----------EIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHG 381 (823)
T ss_pred H-----------HHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeee
Confidence 0 01111222110 01111112222 0 022345567789999999999
Q ss_pred cccCCHHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcCc--cHHHHHHHHHHHhc-CHHHHHHHHhhCCcHHHH
Q 004582 553 LDTGTRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLEDP--ILSSYCIKIIKALC-TSEARAAVAESNPCIDSI 629 (744)
Q Consensus 553 L~s~~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~--~l~~~al~~L~nLa-~~e~~~~i~~~~g~V~~L 629 (744)
|...-.++|++|...++.|+..... ....++..|++++.|+ .++..|+.+|..++ +-. |.+ .-++.+
T Consensus 382 lEDEf~EVR~AAV~Sl~~La~ssP~----FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~----i~e--eql~~i 451 (823)
T KOG2259|consen 382 LEDEFYEVRRAAVASLCSLATSSPG----FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA----IRE--EQLRQI 451 (823)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCC----cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe----ecH--HHHHHH
Confidence 9888889999999999999875431 0124567899999875 67889999999888 522 222 335667
Q ss_pred HHHHcCCCHHHHHHHHHHHHH
Q 004582 630 AKLLETGTREEQEHIVDVLLS 650 (744)
Q Consensus 630 v~lL~~~s~~~~e~A~~~L~~ 650 (744)
.+-|...++++|+..-..|.+
T Consensus 452 l~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 452 LESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHhcCHHHHHHHHHHHHh
Confidence 777888888888766555444
No 198
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.91 E-value=33 Score=40.62 Aligned_cols=233 Identities=12% Similarity=0.154 Sum_probs=132.6
Q ss_pred hhcCCC--HHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCccccc
Q 004582 427 KLASRP--WGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPLFH 504 (744)
Q Consensus 427 ~L~s~~--~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~iv~ 504 (744)
.|.+++ .-++.+|+-.|-.+-+.+++ .+-..+.+..++.+|.+ .+-.+..+++..+-.+++....- -
T Consensus 154 lLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL~D----~~~gv~ta~~sLi~~lvk~~p~~----y 222 (938)
T KOG1077|consen 154 LLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLLDD----QHMGVVTAATSLIEALVKKNPES----Y 222 (938)
T ss_pred HHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHhCc----cccceeeehHHHHHHHHHcCCHH----H
Confidence 344543 34566666666666666554 23345788899999987 45566666666666666643221 1
Q ss_pred ccchHHHHHhhcc-------h-------------hHHHHHHHHHHhccChhh--hHHHHhcCCchhhhccccc----CCH
Q 004582 505 KDEICTFALFLDS-------E-------------IMEEALEIIEVLSHQQNY--ASELVASGIIPSIIKFLDT----GTR 558 (744)
Q Consensus 505 ~Gai~~Lv~lL~s-------~-------------~~e~A~~~L~~Ls~~~~~--k~~I~~~G~Ip~Lv~lL~s----~~~ 558 (744)
.+++++-|..|.. . ..-..+.+|.++-..++. |..+. ..+..++...+. .+.
T Consensus 223 k~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~v 300 (938)
T KOG1077|consen 223 KTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKKV 300 (938)
T ss_pred hhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccch
Confidence 1334443333321 1 013466666655333332 33332 233334433331 121
Q ss_pred ---HHHHHHHHHHHHhcCC-cchHHHHHhcCCcHhHHHHhcC--ccHHHHHHHHHHHhc-CHHHHHHHHhhCCcHHHHHH
Q 004582 559 ---ESRELAIKILCNLSSG-DNIVYHILYLDCTSKLVRLLED--PILSSYCIKIIKALC-TSEARAAVAESNPCIDSIAK 631 (744)
Q Consensus 559 ---~~k~~A~~aL~nLs~~-~~n~~~iv~aG~v~~Lv~lL~~--~~l~~~al~~L~nLa-~~e~~~~i~~~~g~V~~Lv~ 631 (744)
.++-..+--..+|..+ ++....++ .++..|-.+|.+ .+++--|+..+..|+ +.....++-. . .+.++.
T Consensus 301 q~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~-h--~d~Ii~ 375 (938)
T KOG1077|consen 301 QHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKK-H--QDTIIN 375 (938)
T ss_pred HhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHH-H--HHHHHH
Confidence 1222222222344444 33333333 456777888854 578889999999999 7666666655 2 788888
Q ss_pred HHc-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHH
Q 004582 632 LLE-TGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKE 684 (744)
Q Consensus 632 lL~-~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~ 684 (744)
.|+ ..+..+++.|+..|+.+|-.+ +.+.+ +.-|++.+.+.+..+|+
T Consensus 376 sLkterDvSirrravDLLY~mcD~~--Nak~I-----V~elLqYL~tAd~sire 422 (938)
T KOG1077|consen 376 SLKTERDVSIRRRAVDLLYAMCDVS--NAKQI-----VAELLQYLETADYSIRE 422 (938)
T ss_pred HhccccchHHHHHHHHHHHHHhchh--hHHHH-----HHHHHHHHhhcchHHHH
Confidence 898 478899999999999999443 33333 34466666666665554
No 199
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.54 E-value=0.19 Score=51.60 Aligned_cols=55 Identities=20% Similarity=0.415 Sum_probs=42.5
Q ss_pred CccccccccccCCCce----------ecCCCccccHHHHHHHHccC-CCCCCCCCCCCCCCCCccc
Q 004582 263 EEFKCSISLRLMYDPV----------VIASGKTFERVWIQKWFNAG-HTTCPKTHMRLDNVSVTPN 317 (744)
Q Consensus 263 ~~f~CPI~~~~m~dPV----------~~~~G~ty~r~~I~~w~~~~-~~~cP~t~~~l~~~~l~pn 317 (744)
++=.|-+|++-+-+-| .++|+|.|---||.-|---| ..|||.|++......+..|
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 4567999987776666 78999999999999997644 5799999987665444444
No 200
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=86.49 E-value=2.7 Score=41.57 Aligned_cols=95 Identities=18% Similarity=0.249 Sum_probs=72.3
Q ss_pred ccHHHHHHHHHHHhc--CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCC-cHHHHHH
Q 004582 597 PILSSYCIKIIKALC--TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTES-IIQCVVD 673 (744)
Q Consensus 597 ~~l~~~al~~L~nLa--~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G-~i~~Lv~ 673 (744)
+.++.+++.+|+-|+ .+ .+++ ..++.+...|.+.++.+|..|+.+|..|-..+- +.-.| .+..++.
T Consensus 2 ~~vR~n~i~~l~DL~~r~~----~~ve--~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~ 70 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYP----NLVE--PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILK 70 (178)
T ss_pred HHHHHHHHHHHHHHHHhCc----HHHH--hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHH
Confidence 456778888888888 33 2334 568899999999999999999999999976542 22234 3477778
Q ss_pred HhhcCCHHHHHHHHHHHHHhhhcCCCCCc
Q 004582 674 ISVNGNSRGKETAKELIMLLDHCKEDNAS 702 (744)
Q Consensus 674 Ll~~~s~~~r~~A~~lL~~L~~~~~~~~~ 702 (744)
++.+.+++++..|...+..+....+.+..
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i 99 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKKRNPNII 99 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhccchHH
Confidence 88999999999999999888766555444
No 201
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=86.14 E-value=0.45 Score=49.97 Aligned_cols=43 Identities=23% Similarity=0.448 Sum_probs=37.3
Q ss_pred CccccccccccCCC---ceecCCCccccHHHHHHHHccCC--CCCCCC
Q 004582 263 EEFKCSISLRLMYD---PVVIASGKTFERVWIQKWFNAGH--TTCPKT 305 (744)
Q Consensus 263 ~~f~CPI~~~~m~d---PV~~~~G~ty~r~~I~~w~~~~~--~~cP~t 305 (744)
.-|.||+..+.-.| ||.++|||..-+.+...--+.|. ..||.|
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 45999999998876 99999999999999998887774 459988
No 202
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.35 E-value=28 Score=41.70 Aligned_cols=240 Identities=11% Similarity=0.190 Sum_probs=134.9
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcccc--
Q 004582 426 SKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPLF-- 503 (744)
Q Consensus 426 ~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~iv-- 503 (744)
.-|.+.+.-++.-|+-+|..++.. + ++ ....|.+.++|+. .++-+++.|+.++..+-....+-..+.
T Consensus 114 nDL~s~nq~vVglAL~alg~i~s~--E----ma-rdlapeVe~Ll~~----~~~~irKKA~Lca~r~irK~P~l~e~f~~ 182 (866)
T KOG1062|consen 114 NDLNSSNQYVVGLALCALGNICSP--E----MA-RDLAPEVERLLQH----RDPYIRKKAALCAVRFIRKVPDLVEHFVI 182 (866)
T ss_pred hhccCCCeeehHHHHHHhhccCCH--H----Hh-HHhhHHHHHHHhC----CCHHHHHHHHHHHHHHHHcCchHHHHhhH
Confidence 446777777888888888888643 2 11 1456777788887 688999999888888744322211110
Q ss_pred ---------ccc----chHHHHHhhcch---------hHHHHHHHHHHhccChhhhHHHHh-cCCch--------hhhcc
Q 004582 504 ---------HKD----EICTFALFLDSE---------IMEEALEIIEVLSHQQNYASELVA-SGIIP--------SIIKF 552 (744)
Q Consensus 504 ---------~~G----ai~~Lv~lL~s~---------~~e~A~~~L~~Ls~~~~~k~~I~~-~G~Ip--------~Lv~l 552 (744)
..| ++..+.++...+ ....-+.+|.++....-... .+ +|.-. .++++
T Consensus 183 ~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspe--ydv~gi~dPFLQi~iLrlLri 260 (866)
T KOG1062|consen 183 AFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPE--YDVHGISDPFLQIRILRLLRI 260 (866)
T ss_pred HHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--cCccCCCchHHHHHHHHHHHH
Confidence 112 333333333221 01233444444443210000 01 12111 24555
Q ss_pred cccCCHHHHHHHHHHHHHhcCCcc---hHHHHHhcCCcHhHHHHhcCccHHHHHHHHHHHhc-CHHHHHHHHh-------
Q 004582 553 LDTGTRESRELAIKILCNLSSGDN---IVYHILYLDCTSKLVRLLEDPILSSYCIKIIKALC-TSEARAAVAE------- 621 (744)
Q Consensus 553 L~s~~~~~k~~A~~aL~nLs~~~~---n~~~iv~aG~v~~Lv~lL~~~~l~~~al~~L~nLa-~~e~~~~i~~------- 621 (744)
|..++.+..+.-...|..++.+.+ |....+=-.+|..++.+..++.++..|+.+|+..- ++++-..-+.
T Consensus 261 LGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~ 340 (866)
T KOG1062|consen 261 LGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRV 340 (866)
T ss_pred hcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhh
Confidence 677777777777777887777654 44444444677778887788888899998888877 5432211110
Q ss_pred ---hCCc----HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHH
Q 004582 622 ---SNPC----IDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKET 685 (744)
Q Consensus 622 ---~~g~----V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~ 685 (744)
...+ =..+++-|++.++.+|..|+..++.|...+ +...+ +.-|++.+...++..+..
T Consensus 341 V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~--Nv~~m-----v~eLl~fL~~~d~~~k~~ 404 (866)
T KOG1062|consen 341 VQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNES--NVRVM-----VKELLEFLESSDEDFKAD 404 (866)
T ss_pred hcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc--cHHHH-----HHHHHHHHHhccHHHHHH
Confidence 0001 134556667777777777777777775332 22222 345666666666666644
No 203
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=85.02 E-value=0.74 Score=35.16 Aligned_cols=43 Identities=14% Similarity=0.223 Sum_probs=22.4
Q ss_pred cccccccC--CCceec--CCCccccHHHHHHHHccCCCCCCCCCCCC
Q 004582 267 CSISLRLM--YDPVVI--ASGKTFERVWIQKWFNAGHTTCPKTHMRL 309 (744)
Q Consensus 267 CPI~~~~m--~dPV~~--~~G~ty~r~~I~~w~~~~~~~cP~t~~~l 309 (744)
||+|.+-| +|=-.. +||+..||.|..+-...++..||-|++++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78887777 222222 78999999998888877788999999875
No 204
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=84.91 E-value=29 Score=38.00 Aligned_cols=195 Identities=14% Similarity=0.146 Sum_probs=134.5
Q ss_pred HHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCC-CCc-ccc-----c-ccchHHHHHhhcchh-HHHHHHH
Q 004582 456 LAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSR-DEM-PLF-----H-KDEICTFALFLDSEI-MEEALEI 526 (744)
Q Consensus 456 ~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~-nk~-~iv-----~-~Gai~~Lv~lL~s~~-~e~A~~~ 526 (744)
.+...|.+..|+..|.. -+-++++.++.+..++..... ++. ..+ . ...+..|+.--+... .-.+-.+
T Consensus 71 Ei~~~dll~~Li~~L~~----L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~m 146 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPK----LDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDM 146 (335)
T ss_dssp HHHHHTHHHHHHHTGGG----S-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhh----CCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHH
Confidence 35567999999999987 689999999999999976432 222 111 1 223333333333332 3456666
Q ss_pred HHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCC-cchHHHHHhc---CCcHhHHHHhcCcc--HH
Q 004582 527 IEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSG-DNIVYHILYL---DCTSKLVRLLEDPI--LS 600 (744)
Q Consensus 527 L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~-~~n~~~iv~a---G~v~~Lv~lL~~~~--l~ 600 (744)
|..+..++.-...|.....+-.+.+.+..++-++...|..++..|-.. ..-....... ..+.....+|.+++ ++
T Consensus 147 lRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 147 LRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 788888887777777888899999999999999999999999986554 4333444433 45666777787765 57
Q ss_pred HHHHHHHHHhc-CHHHHHHHH---hhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Q 004582 601 SYCIKIIKALC-TSEARAAVA---ESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHE 654 (744)
Q Consensus 601 ~~al~~L~nLa-~~e~~~~i~---~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~ 654 (744)
+.++..|+.|- ++.+...|. .+..-+..++.+|++.+..+|-.|..++--...+
T Consensus 227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 99999999999 887766543 3345677888889999999999998887665544
No 205
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=84.42 E-value=0.25 Score=58.78 Aligned_cols=46 Identities=17% Similarity=0.301 Sum_probs=38.9
Q ss_pred cccccccccCCCceecCCCccccHHHHHHHHccC-CCCCCCCCCCCCC
Q 004582 265 FKCSISLRLMYDPVVIASGKTFERVWIQKWFNAG-HTTCPKTHMRLDN 311 (744)
Q Consensus 265 f~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~~~-~~~cP~t~~~l~~ 311 (744)
+.|+||.+ -.+||++.|||-||++|+.+.++.- ...||.|+..+.+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 89999999 8999999999999999999987643 3469999765543
No 206
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.20 E-value=0.5 Score=50.93 Aligned_cols=50 Identities=22% Similarity=0.298 Sum_probs=43.0
Q ss_pred ccccccccccCCC---ceecCCCccccHHHHHHHHccCCCCCCCCCCCCCCCC
Q 004582 264 EFKCSISLRLMYD---PVVIASGKTFERVWIQKWFNAGHTTCPKTHMRLDNVS 313 (744)
Q Consensus 264 ~f~CPI~~~~m~d---PV~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~~~ 313 (744)
.+.|.|++++|-| |++.+.|++|-..+|+.|=...+-.||.++..+..+.
T Consensus 330 ~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~~ 382 (389)
T KOG0396|consen 330 RLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYSE 382 (389)
T ss_pred HHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHHH
Confidence 3789999999987 9999999999999999997654588999998876543
No 207
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=84.10 E-value=1.8 Score=29.60 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=25.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhc
Q 004582 626 IDSIAKLLETGTREEQEHIVDVLLSLCH 653 (744)
Q Consensus 626 V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~ 653 (744)
+|.+++++.+.++++|..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999874
No 208
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=83.62 E-value=2.3 Score=43.77 Aligned_cols=80 Identities=29% Similarity=0.436 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHhcCCc-------HhHHHHhcC---ccHHHHHHHHHHHhc--CHHHHHHHHhhCCc
Q 004582 558 RESRELAIKILCNLSSGDNIVYHILYLDCT-------SKLVRLLED---PILSSYCIKIIKALC--TSEARAAVAESNPC 625 (744)
Q Consensus 558 ~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v-------~~Lv~lL~~---~~l~~~al~~L~nLa--~~e~~~~i~~~~g~ 625 (744)
..-+..|+.+|+.|+..+.|...+...|-. ..|+++|.. +-.++-|+.+|.+|| .......+....++
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 457899999999999999999888765443 344444533 457899999999999 44444456555799
Q ss_pred HHHHHHHHcCCC
Q 004582 626 IDSIAKLLETGT 637 (744)
Q Consensus 626 V~~Lv~lL~~~s 637 (744)
|..|+.+++...
T Consensus 218 i~~Li~FiE~a~ 229 (257)
T PF12031_consen 218 ISHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHHH
Confidence 999999997543
No 209
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.53 E-value=0.73 Score=49.81 Aligned_cols=49 Identities=18% Similarity=0.458 Sum_probs=33.4
Q ss_pred CccccccccccCCC---ce-ecCCCccccHHHHHHHHccC--CCCCCCCCCCCCC
Q 004582 263 EEFKCSISLRLMYD---PV-VIASGKTFERVWIQKWFNAG--HTTCPKTHMRLDN 311 (744)
Q Consensus 263 ~~f~CPI~~~~m~d---PV-~~~~G~ty~r~~I~~w~~~~--~~~cP~t~~~l~~ 311 (744)
-.-.|.||-+.+-. =- |-.|||+|.-.|+..||... +.+||+|+-.++.
T Consensus 3 i~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~ 57 (465)
T KOG0827|consen 3 IMAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE 57 (465)
T ss_pred ccceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence 34468888544311 11 23599999999999999854 4589999844543
No 210
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.32 E-value=0.83 Score=49.74 Aligned_cols=49 Identities=20% Similarity=0.408 Sum_probs=40.5
Q ss_pred CCccccccccccCCCce-----e---cCCCccccHHHHHHHHccC------CCCCCCCCCCCC
Q 004582 262 PEEFKCSISLRLMYDPV-----V---IASGKTFERVWIQKWFNAG------HTTCPKTHMRLD 310 (744)
Q Consensus 262 p~~f~CPI~~~~m~dPV-----~---~~~G~ty~r~~I~~w~~~~------~~~cP~t~~~l~ 310 (744)
-.+..|=||++.-.+++ . ..|-|+||-.||.+|=... .+.||.|+.+..
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 46799999999999999 4 5699999999999996432 367999987643
No 211
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=81.93 E-value=12 Score=36.20 Aligned_cols=140 Identities=16% Similarity=0.210 Sum_probs=87.1
Q ss_pred chhhhccccc--CCHHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcC--ccHHHHHHHHHHHhc--CHHHHHHH
Q 004582 546 IPSIIKFLDT--GTRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLED--PILSSYCIKIIKALC--TSEARAAV 619 (744)
Q Consensus 546 Ip~Lv~lL~s--~~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~--~~l~~~al~~L~nLa--~~e~~~~i 619 (744)
+..++..|.. .+.++|..|+-++..+- +..+... ..-+-+.+-.++.+ .+-...++.+|..|- .++-...+
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~-~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEF-KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 4445554443 45568888887877772 2222222 11122222233333 245567777777777 78888888
Q ss_pred HhhCCcHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCC-HH-HHHHHHHHH
Q 004582 620 AESNPCIDSIAKLLE--TGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGN-SR-GKETAKELI 690 (744)
Q Consensus 620 ~~~~g~V~~Lv~lL~--~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s-~~-~r~~A~~lL 690 (744)
...+|+++.++.++. ..+...+..++.+|..=| .+.. ++..+...+++.|-++...+. +. +|..|+-.|
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc-~d~~-~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAAC-IDKS-CRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT-TSHH-HHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH-ccHH-HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHH
Confidence 877899999999998 677777878877766644 4434 444555556899999996554 44 566665544
No 212
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=81.91 E-value=60 Score=40.82 Aligned_cols=251 Identities=13% Similarity=0.103 Sum_probs=131.6
Q ss_pred CHHHHHHHHHHHHHHhhhc-chhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCC----CCccccccc
Q 004582 432 PWGSQCDAVENIKKLLKDN-GQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSR----DEMPLFHKD 506 (744)
Q Consensus 432 ~~e~q~~Al~~Lr~Lak~~-~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~----nk~~iv~~G 506 (744)
..+.+..|++.|..++..- ++++ -..++|-+|.++.+ ..+.+|..|+.+|..+....+ +-..+.-.-
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~----LDRVlPY~v~l~~D----s~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY 507 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVK----LDRVLPYFVHLLMD----SEADVRATALETLTELLALVRDIPPSDANIFPEY 507 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHH----HhhhHHHHHHHhcC----chHHHHHHHHHHHHHHHhhccCCCcccchhhHhh
Confidence 4678899999999998642 2222 24678999999998 689999999999999876433 333344556
Q ss_pred chHHHHHhhcchh----HHHHHHHHHHhccCh----hhhHHHHhcCCchhhhc-cc--ccCCH---HHHHHHHHHHHHhc
Q 004582 507 EICTFALFLDSEI----MEEALEIIEVLSHQQ----NYASELVASGIIPSIIK-FL--DTGTR---ESRELAIKILCNLS 572 (744)
Q Consensus 507 ai~~Lv~lL~s~~----~e~A~~~L~~Ls~~~----~~k~~I~~~G~Ip~Lv~-lL--~s~~~---~~k~~A~~aL~nLs 572 (744)
.+|.|-.++.... .-.-+..|..|+... +.-..+...|....... -. .+.+. ............|.
T Consensus 508 lfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLl 587 (1431)
T KOG1240|consen 508 LFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLL 587 (1431)
T ss_pred hhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHH
Confidence 7777878875421 111111122222110 11111112332222221 00 01111 11122222233344
Q ss_pred CCcc--hHHHHHhcCCcHhHHHHh-----------------cCccHH--HHHHHHHHHhcCHHHHHHHHhhCCcHHHHHH
Q 004582 573 SGDN--IVYHILYLDCTSKLVRLL-----------------EDPILS--SYCIKIIKALCTSEARAAVAESNPCIDSIAK 631 (744)
Q Consensus 573 ~~~~--n~~~iv~aG~v~~Lv~lL-----------------~~~~l~--~~al~~L~nLa~~e~~~~i~~~~g~V~~Lv~ 631 (744)
++++ .|..+++. |-+|..++ .|.+.. ..=..-+.-+|---|... ++ ++.+|.|.+
T Consensus 588 sd~~~~Vkr~Lle~--i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs-~s-eyllPLl~Q 663 (1431)
T KOG1240|consen 588 SDSPPIVKRALLES--IIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRS-VS-EYLLPLLQQ 663 (1431)
T ss_pred cCCchHHHHHHHHH--HHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeee-HH-HHHHHHHHH
Confidence 4433 23333333 33333333 332211 111111111110001111 12 467788888
Q ss_pred HHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 004582 632 LLETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLDHC 696 (744)
Q Consensus 632 lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~~~ 696 (744)
-|.++.+-+...|+..|..||..+--....+. .++.....++-+.+.=+|+.++..|....++
T Consensus 664 ~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 664 GLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred hccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 88889999999999999999966432222221 2344455567788888999998888665543
No 213
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=81.71 E-value=0.34 Score=56.42 Aligned_cols=47 Identities=19% Similarity=0.360 Sum_probs=39.4
Q ss_pred ccccccccccCCCceec---CCCccccHHHHHHHHccCCCCCCCCCCCCCC
Q 004582 264 EFKCSISLRLMYDPVVI---ASGKTFERVWIQKWFNAGHTTCPKTHMRLDN 311 (744)
Q Consensus 264 ~f~CPI~~~~m~dPV~~---~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~ 311 (744)
.-.||+|..-+.|-.+. .|||-||..||..|-+- ..|||.|+..+..
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhe
Confidence 35799999999998876 79999999999999864 5799999876653
No 214
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=81.40 E-value=0.72 Score=49.88 Aligned_cols=45 Identities=18% Similarity=0.338 Sum_probs=39.1
Q ss_pred ccccccccCCCceecCCCccccHHHHHHHHcc-CCCCCCCCCCCCC
Q 004582 266 KCSISLRLMYDPVVIASGKTFERVWIQKWFNA-GHTTCPKTHMRLD 310 (744)
Q Consensus 266 ~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~~-~~~~cP~t~~~l~ 310 (744)
+|-||-+==+|=-|=+|||-.|-.|+-.|... +..+||.|+-.+.
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 79999999899888899999999999999864 4789999985543
No 215
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=81.12 E-value=49 Score=32.53 Aligned_cols=59 Identities=19% Similarity=0.133 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCC
Q 004582 432 PWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDE 499 (744)
Q Consensus 432 ~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk 499 (744)
++.+|..++..+..++..-+ .+++ ..+|.+...|++ +++.++++|+.+|..|...+--|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~----~~ve-~~~~~l~~~L~D----~~~~VR~~al~~Ls~Li~~d~ik 59 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP----NLVE-PYLPNLYKCLRD----EDPLVRKTALLVLSHLILEDMIK 59 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc----HHHH-hHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHcCcee
Confidence 46788999999998886533 2333 467888889988 79999999999988886654433
No 216
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=80.59 E-value=21 Score=40.28 Aligned_cols=124 Identities=14% Similarity=0.184 Sum_probs=93.0
Q ss_pred hhcccccCCHHHHHHHHHHHHHhcCCcc----hHHHHHhcCCcHhHHHHhcCc-------c--HHHHHHHHHHHhc-CHH
Q 004582 549 IIKFLDTGTRESRELAIKILCNLSSGDN----IVYHILYLDCTSKLVRLLEDP-------I--LSSYCIKIIKALC-TSE 614 (744)
Q Consensus 549 Lv~lL~s~~~~~k~~A~~aL~nLs~~~~----n~~~iv~aG~v~~Lv~lL~~~-------~--l~~~al~~L~nLa-~~e 614 (744)
+..++...+.+-|-+|+-....+..+++ ||..+.++=+.+-+=++|... + ...-++.+|+-.| .+|
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 5566666777777778777778877665 788889998889999998432 2 3566788888888 765
Q ss_pred --HHHHHHhhCCcHHHHHHHHcCC-CHH------HHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhh
Q 004582 615 --ARAAVAESNPCIDSIAKLLETG-TRE------EQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISV 676 (744)
Q Consensus 615 --~~~~i~~~~g~V~~Lv~lL~~~-s~~------~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~ 676 (744)
....|++. ||.|.+++..+ ++. ..+.+..+|..++..... ...++..|+++.+.++-.
T Consensus 96 lAsh~~~v~~---IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 96 LASHEEMVSR---IPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYE 162 (698)
T ss_pred hccCHHHHHh---hhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHh
Confidence 34567764 99999999753 333 678899999999888544 467788999999987654
No 217
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=80.54 E-value=52 Score=35.66 Aligned_cols=53 Identities=11% Similarity=0.159 Sum_probs=35.5
Q ss_pred cHHHHHHHHHHHhc--CHH-HHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Q 004582 598 ILSSYCIKIIKALC--TSE-ARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLC 652 (744)
Q Consensus 598 ~l~~~al~~L~nLa--~~e-~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc 652 (744)
.+...|+..-+-|. .+. ......+ ..++.|+.+|.+.+..+|-.|-.+|.-|.
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~--~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLLE--EALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 45666666555555 232 2234444 56999999999999999987766665553
No 218
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.35 E-value=0.87 Score=52.15 Aligned_cols=59 Identities=24% Similarity=0.398 Sum_probs=41.8
Q ss_pred CccccccccccC----CCceecCCCccccHHHHHHHHccCCCCCC--CCCCC--CCCCCCcccHHHHHHH
Q 004582 263 EEFKCSISLRLM----YDPVVIASGKTFERVWIQKWFNAGHTTCP--KTHMR--LDNVSVTPNVAIKELI 324 (744)
Q Consensus 263 ~~f~CPI~~~~m----~dPV~~~~G~ty~r~~I~~w~~~~~~~cP--~t~~~--l~~~~l~pn~~l~~~i 324 (744)
+-++|+||...| ..||.+-||||.|+.|.+.-.+ .+|| .-.-. ....+.--|++|-+.+
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp~~~De~~~~~~~~e~p~n~alL~~~ 76 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCPTKRDEDSSLMQLKEEPRNYALLRRE 76 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCCCCccccchhcChhhcchhHHHHHhh
Confidence 457899997666 5799999999999999998874 4777 21111 1234556677776665
No 219
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=80.23 E-value=6.7 Score=32.93 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcC---ccHHHHHHHHHHHhc-CHHHHHHHHh
Q 004582 561 RELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLED---PILSSYCIKIIKALC-TSEARAAVAE 621 (744)
Q Consensus 561 k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~---~~l~~~al~~L~nLa-~~e~~~~i~~ 621 (744)
.+.|++|+.++++.+.....+-+.++|+.++++... -.++--|.-+|..++ +.+|...+.+
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~ 68 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDE 68 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 578999999999988777777778999999999854 367899999999999 9999887766
No 220
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=80.21 E-value=19 Score=43.44 Aligned_cols=67 Identities=16% Similarity=0.159 Sum_probs=35.8
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 004582 625 CIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLD 694 (744)
Q Consensus 625 ~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~ 694 (744)
.++.+.+++.++++.+|..|+-++..+-.-+. ....+.|.+..+..++.+.+|.+.++|...|..+.
T Consensus 128 ~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 128 IIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 34555555555555555555555555543332 23344455555555555555555555555555444
No 221
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=79.46 E-value=4.5 Score=37.26 Aligned_cols=68 Identities=9% Similarity=0.113 Sum_probs=55.4
Q ss_pred HHHHhh-cCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhc
Q 004582 423 TSLSKL-ASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILS 494 (744)
Q Consensus 423 ~ll~~L-~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~ 494 (744)
.++..| .+.++....-|+..|..+++..+..|..+-+.|+=+.+.+++.+ .|++++..|+.++..+..
T Consensus 47 ~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h----~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 47 KLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNH----EDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-----SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcC----CCHHHHHHHHHHHHHHHH
Confidence 345555 34467777889999999999999988888889999999999998 799999999999887754
No 222
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=79.23 E-value=3.3 Score=28.30 Aligned_cols=29 Identities=7% Similarity=0.190 Sum_probs=24.9
Q ss_pred cHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 004582 667 IIQCVVDISVNGNSRGKETAKELIMLLDH 695 (744)
Q Consensus 667 ~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~~ 695 (744)
++|.+++++.+.++++|..|+..|..|.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 47999999999999999999999987754
No 223
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.09 E-value=0.54 Score=36.48 Aligned_cols=44 Identities=20% Similarity=0.307 Sum_probs=36.0
Q ss_pred ccccccccCCCceecCCCc-cccHHHHHHHHccCCCCCCCCCCCC
Q 004582 266 KCSISLRLMYDPVVIASGK-TFERVWIQKWFNAGHTTCPKTHMRL 309 (744)
Q Consensus 266 ~CPI~~~~m~dPV~~~~G~-ty~r~~I~~w~~~~~~~cP~t~~~l 309 (744)
.|-||.+---|-|+-.||| -.|..|=.+-+..++.+||.|+.|+
T Consensus 9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 4899999888999999998 4577776666666889999998765
No 224
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=79.03 E-value=1.3 Score=34.81 Aligned_cols=44 Identities=11% Similarity=0.110 Sum_probs=33.2
Q ss_pred ccccccccCCCceecCCCccccHHHHHHHHccCCCCCCCCCCCCCCC
Q 004582 266 KCSISLRLMYDPVVIASGKTFERVWIQKWFNAGHTTCPKTHMRLDNV 312 (744)
Q Consensus 266 ~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~~ 312 (744)
.|=.+...=...++++|||-.++.|.- -+...-||.|+.++...
T Consensus 9 ~~~~~~~~~~~~~~~pCgH~I~~~~f~---~~rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 9 PCVFCGFVGTKGTVLPCGHLICDNCFP---GERYNGCPFCGTPFEFD 52 (55)
T ss_pred eEEEccccccccccccccceeeccccC---hhhccCCCCCCCcccCC
Confidence 355566666778999999999998832 23467899999998654
No 225
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=78.93 E-value=25 Score=40.39 Aligned_cols=149 Identities=14% Similarity=0.171 Sum_probs=104.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCccc
Q 004582 423 TSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPL 502 (744)
Q Consensus 423 ~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~i 502 (744)
.+...+.+++...|..|+..|..+..+-...+. +....++..|.++..+...-.........+.++..+..+.-.-...
T Consensus 87 ~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~e-fi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~ 165 (713)
T KOG2999|consen 87 RIMEILTEGNNISKMEALKELDSLSLDPTFAEE-FIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWES 165 (713)
T ss_pred HHHHHHhCCCcHHHHHHHHHHhhccccHHHHHH-HHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeee
Confidence 577788899999999999999888876444444 4455678899999987422123455566666666665555544555
Q ss_pred ccccchHHHHHhhc-----chhHHHHHHHHHHhccChhh-hHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhc
Q 004582 503 FHKDEICTFALFLD-----SEIMEEALEIIEVLSHQQNY-ASELVASGIIPSIIKFLDTGTRESRELAIKILCNLS 572 (744)
Q Consensus 503 v~~Gai~~Lv~lL~-----s~~~e~A~~~L~~Ls~~~~~-k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs 572 (744)
+...+|...+.+.+ ......|+..|.++....+. +..+.+.--+..|+..|+..+..++..|+..|-.+-
T Consensus 166 ~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 166 VSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred cccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 56666666666653 22346799999888887775 555556778999999999999988888776666554
No 226
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=78.19 E-value=16 Score=44.61 Aligned_cols=123 Identities=14% Similarity=0.182 Sum_probs=85.5
Q ss_pred HhcCCchhhhccccc-----CCHHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhc----C------ccHHHHHHH
Q 004582 541 VASGIIPSIIKFLDT-----GTRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLE----D------PILSSYCIK 605 (744)
Q Consensus 541 ~~~G~Ip~Lv~lL~s-----~~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~----~------~~l~~~al~ 605 (744)
.+.|++..|+.+|.+ +..+.-...++.|..++....|+..+++.|+++.|++.|. + ..+.+.-+.
T Consensus 114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 357788888777765 3345666678888888999999999999999999999882 2 357777777
Q ss_pred HHHHhcCHHHHHHH------HhhC-------CcHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 004582 606 IIKALCTSEARAAV------AESN-------PCIDSIAKLLET----GTREEQEHIVDVLLSLCHEHTKYCQLAN 663 (744)
Q Consensus 606 ~L~nLa~~e~~~~i------~~~~-------g~V~~Lv~lL~~----~s~~~~e~A~~~L~~Lc~~~~~~~~~v~ 663 (744)
++.-|....+...+ .... .-|..|++.+.+ .++.+.+..+++|-.|+.++.+..+.++
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv 268 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALV 268 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHH
Confidence 77777621111111 1111 125666666654 3688899999999999988876555443
No 227
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=77.49 E-value=48 Score=36.35 Aligned_cols=155 Identities=16% Similarity=0.131 Sum_probs=116.5
Q ss_pred HHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCCcc-hHH-----HHHh--cCCcHhHHHHhcCccHHHHHHHHHHH
Q 004582 538 SELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSGDN-IVY-----HILY--LDCTSKLVRLLEDPILSSYCIKIIKA 609 (744)
Q Consensus 538 ~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~-n~~-----~iv~--aG~v~~Lv~lL~~~~l~~~al~~L~n 609 (744)
..+...+.++.|+..|..-+-+.|+.++.+..++..... ++. .+.. ..++..|+.--.++++.-.|-.+|+.
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHH
Confidence 345567899999999999999999999999988876532 221 2222 23444444444678899999999999
Q ss_pred hc-CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCC---cHHHHHHHhhcCCHHHHHH
Q 004582 610 LC-TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTES---IIQCVVDISVNGNSRGKET 685 (744)
Q Consensus 610 La-~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G---~i~~Lv~Ll~~~s~~~r~~ 685 (744)
.. .+.-...|.. ...+..+.+.+..++=++.-.|..++-.+-.............. .+.....|+.+++=-+|+.
T Consensus 150 c~k~e~l~~~iL~-~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq 228 (335)
T PF08569_consen 150 CIKHESLAKIILY-SECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ 228 (335)
T ss_dssp HTTSHHHHHHHHT-SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred HHhhHHHHHHHhC-cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence 99 8888888888 58899999999999999999999999886555555444444443 5778888999999999999
Q ss_pred HHHHHHHh
Q 004582 686 AKELIMLL 693 (744)
Q Consensus 686 A~~lL~~L 693 (744)
+.+||.-|
T Consensus 229 slkLL~el 236 (335)
T PF08569_consen 229 SLKLLGEL 236 (335)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 99999644
No 228
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=77.33 E-value=70 Score=39.27 Aligned_cols=256 Identities=14% Similarity=0.124 Sum_probs=138.7
Q ss_pred cHHHHHhhcCC--CHHHHHHHHHHHHHHhh-hcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCC
Q 004582 421 DLTSLSKLASR--PWGSQCDAVENIKKLLK-DNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSR 497 (744)
Q Consensus 421 ~~~ll~~L~s~--~~e~q~~Al~~Lr~Lak-~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~ 497 (744)
+|.++..|.+- ....+..|+.-|..+.. ++++.-.-.. .-..++++....+ .-.++.-.|+.+...++..-+
T Consensus 478 vpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~-~~Ls~~v~~aV~d----~fyKisaEAL~v~~~lvkvir 552 (1233)
T KOG1824|consen 478 VPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHL-SALSPPVVAAVGD----PFYKISAEALLVCQQLVKVIR 552 (1233)
T ss_pred chhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccch-hhhhhHHHHHhcC----chHhhhHHHHHHHHHHHHHhc
Confidence 44555555433 34556667777776543 3333221111 1223333333433 456777788888888765322
Q ss_pred CCcc--ccc-ccchHHH----HHhhc-----chhHHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHH
Q 004582 498 DEMP--LFH-KDEICTF----ALFLD-----SEIMEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAI 565 (744)
Q Consensus 498 nk~~--iv~-~Gai~~L----v~lL~-----s~~~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~ 565 (744)
-... ..+ .-.+..+ .+.|. .++.+.|..++..+-.+-...-..--...+|.+++-| +++-.|-.|+
T Consensus 553 pl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl--~nEiTRl~Av 630 (1233)
T KOG1824|consen 553 PLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERL--GNEITRLTAV 630 (1233)
T ss_pred ccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH--hchhHHHHHH
Confidence 2211 111 1122222 23332 2355777777654333211111111123444455444 5566788899
Q ss_pred HHHHHhcCCcchHHHH-HhcCCcHhHHHHhcC--ccHHHHHHHHHHHhc-C--HHHHHHHHhhCCcHHHHHHHHcCCCHH
Q 004582 566 KILCNLSSGDNIVYHI-LYLDCTSKLVRLLED--PILSSYCIKIIKALC-T--SEARAAVAESNPCIDSIAKLLETGTRE 639 (744)
Q Consensus 566 ~aL~nLs~~~~n~~~i-v~aG~v~~Lv~lL~~--~~l~~~al~~L~nLa-~--~e~~~~i~~~~g~V~~Lv~lL~~~s~~ 639 (744)
+||..++..+-.-... +-..+++.|+..++. ..++-.++.++-.|. + ..+.....+ .++..+-.++...+-.
T Consensus 631 kAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e--~vL~el~~Lisesdlh 708 (1233)
T KOG1824|consen 631 KALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLE--AVLVELPPLISESDLH 708 (1233)
T ss_pred HHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH--HHHHHhhhhhhHHHHH
Confidence 9999887664322211 223566777777743 244555566665555 2 233334444 3455566666777888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHH
Q 004582 640 EQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETA 686 (744)
Q Consensus 640 ~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A 686 (744)
+.++|+.+|..+....+.. .....+-+++.++.++.+..-.+..-.
T Consensus 709 vt~~a~~~L~tl~~~~ps~-l~~~~~~iL~~ii~ll~Spllqg~al~ 754 (1233)
T KOG1824|consen 709 VTQLAVAFLTTLAIIQPSS-LLKISNPILDEIIRLLRSPLLQGGALS 754 (1233)
T ss_pred HHHHHHHHHHHHHhcccHH-HHHHhhhhHHHHHHHhhCccccchHHH
Confidence 9999999999998776542 344455589999999988876655433
No 229
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=77.08 E-value=12 Score=31.38 Aligned_cols=65 Identities=11% Similarity=0.069 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhc-CHHHHHHHHhhCCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCC
Q 004582 600 SSYCIKIIKALC-TSEARAAVAESNPCIDSIAKLLE-TGTREEQEHIVDVLLSLCHEHTKYCQLANTES 666 (744)
Q Consensus 600 ~~~al~~L~nLa-~~e~~~~i~~~~g~V~~Lv~lL~-~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G 666 (744)
.+.|++++++++ ++.|..-+-+ .+.|+.++++.. +....+|--|..+|.-+++.. +-+..+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~-~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~-~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDE-SDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE-EGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhh-cCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH-HHHHHHHHcC
Confidence 468999999999 8888887776 699999999997 467889999999999887664 3344444443
No 230
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=76.98 E-value=23 Score=40.03 Aligned_cols=115 Identities=12% Similarity=0.148 Sum_probs=86.3
Q ss_pred hhhHHHHhcCCchhhhcccccCC-------HHHHHHHHHHHHHhcCCcch--HHHHHhcCCcHhHHHHhc---Ccc----
Q 004582 535 NYASELVASGIIPSIIKFLDTGT-------RESRELAIKILCNLSSGDNI--VYHILYLDCTSKLVRLLE---DPI---- 598 (744)
Q Consensus 535 ~~k~~I~~~G~Ip~Lv~lL~s~~-------~~~k~~A~~aL~nLs~~~~n--~~~iv~aG~v~~Lv~lL~---~~~---- 598 (744)
-+|+.+.++=+.+.+=++|.+++ .-.+.-++..|...+..++- +..|+ ..||.|+.++. |++
T Consensus 47 ~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~ 124 (698)
T KOG2611|consen 47 LNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEMV--SRIPLLLEVMSKGIDTDYEDN 124 (698)
T ss_pred hhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHHH--HhhhHHHHHHHhcCCCchhhh
Confidence 45778888888999989887643 24777888899999988763 33443 57999999994 233
Q ss_pred --HHHHHHHHHHHhc-CHHHHHHHHhhCCcHHHHHHHHcC-CCHHHHHHHHHHHHHHh
Q 004582 599 --LSSYCIKIIKALC-TSEARAAVAESNPCIDSIAKLLET-GTREEQEHIVDVLLSLC 652 (744)
Q Consensus 599 --l~~~al~~L~nLa-~~e~~~~i~~~~g~V~~Lv~lL~~-~s~~~~e~A~~~L~~Lc 652 (744)
+.+.|-.+|...| ++.|...++. .|+++.+.++-.- +..-.++-|+.+++-+.
T Consensus 125 ~~m~~d~Y~cL~~Va~~e~G~~~Lia-~G~~~~~~Q~y~~~~~~~d~alal~Vlll~~ 181 (698)
T KOG2611|consen 125 LIMLEDCYECLYLVATAEAGLMTLIA-SGGLRVIAQMYELPDGSHDMALALKVLLLLV 181 (698)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHh-cCchHHHHHHHhCCCCchhHHHHHHHHHHHH
Confidence 7899999999999 9999999999 5999999977642 33344555666655544
No 231
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.78 E-value=32 Score=42.30 Aligned_cols=243 Identities=15% Similarity=0.158 Sum_probs=144.4
Q ss_pred HHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcccccccchHHHHHhhcchhH
Q 004582 441 ENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPLFHKDEICTFALFLDSEIM 520 (744)
Q Consensus 441 ~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~iv~~Gai~~Lv~lL~s~~~ 520 (744)
..|-.+.|.+.+|.....++.++..++.+|-+ .+-+..-+.++..|...+... ++...+-.+|..|.+|..
T Consensus 664 DcLisllKnnteNqklFreanGvklilpflin------dehRSslLrivscLitvdpkq---vhhqelmalVdtLksgmv 734 (2799)
T KOG1788|consen 664 DCLISLLKNNTENQKLFREANGVKLILPFLIN------DEHRSSLLRIVSCLITVDPKQ---VHHQELMALVDTLKSGMV 734 (2799)
T ss_pred HHHHHHHhccchhhHHHHhhcCceEEEEeeec------hHHHHHHHHHHHHHhccCccc---ccHHHHHHHHHHHHhcce
Confidence 45667788899999999999988888888844 233333344444443333222 344567778888877521
Q ss_pred ---------------HHHHHHHHHhccCh-hhhHHHHhcCCchhhhccccc----------CCHHHHHHHHHHHHHh---
Q 004582 521 ---------------EEALEIIEVLSHQQ-NYASELVASGIIPSIIKFLDT----------GTRESRELAIKILCNL--- 571 (744)
Q Consensus 521 ---------------e~A~~~L~~Ls~~~-~~k~~I~~~G~Ip~Lv~lL~s----------~~~~~k~~A~~aL~nL--- 571 (744)
...+++++..-... ..+..++++|+...|...|.. ++...-..-...|+.+
T Consensus 735 t~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTl 814 (2799)
T KOG1788|consen 735 TRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTL 814 (2799)
T ss_pred eccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHH
Confidence 23556666555433 346666788888877766632 1222222223344433
Q ss_pred --cCCcchHHHH-------------HhcC---------CcHhHHHHh----cCccHHH--HHHHHHHHhc-C------H-
Q 004582 572 --SSGDNIVYHI-------------LYLD---------CTSKLVRLL----EDPILSS--YCIKIIKALC-T------S- 613 (744)
Q Consensus 572 --s~~~~n~~~i-------------v~aG---------~v~~Lv~lL----~~~~l~~--~al~~L~nLa-~------~- 613 (744)
+.++.|+..+ .+.| .|..|.++- ..+.+.. .|+..+..+- + |
T Consensus 815 avcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPs 894 (2799)
T KOG1788|consen 815 AVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPS 894 (2799)
T ss_pred HHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCC
Confidence 3455565543 1223 122222211 1122221 2222232222 1 1
Q ss_pred ----HHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhh---cCCHHHHHHH
Q 004582 614 ----EARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISV---NGNSRGKETA 686 (744)
Q Consensus 614 ----e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~---~~s~~~r~~A 686 (744)
..++.|.. +|++..|+..+-...|+.|-.-+..|.++++-++.+....-..|.+..|+++.. +|+.-.-..|
T Consensus 895 Gqfnpdk~~iyn-agavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLsha 973 (2799)
T KOG1788|consen 895 GQFNPDKQKIYN-AGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHA 973 (2799)
T ss_pred CCcCchHhhhcc-cchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhcc
Confidence 23556777 699999999998889999999999999999888877788888898888888764 5555555555
Q ss_pred HHHHHHh
Q 004582 687 KELIMLL 693 (744)
Q Consensus 687 ~~lL~~L 693 (744)
.+++..|
T Consensus 974 lkIvemL 980 (2799)
T KOG1788|consen 974 LKIVEML 980 (2799)
T ss_pred HHHHHHH
Confidence 5555544
No 232
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=76.72 E-value=22 Score=34.96 Aligned_cols=105 Identities=10% Similarity=0.078 Sum_probs=70.3
Q ss_pred HhHHHHhcCccHHHHHHHHHHHhc--C-HHHHHHHHhhCCcHHHHHHHHcC---------CCHHHHHHHHHHHHHHhcCC
Q 004582 588 SKLVRLLEDPILSSYCIKIIKALC--T-SEARAAVAESNPCIDSIAKLLET---------GTREEQEHIVDVLLSLCHEH 655 (744)
Q Consensus 588 ~~Lv~lL~~~~l~~~al~~L~nLa--~-~e~~~~i~~~~g~V~~Lv~lL~~---------~s~~~~e~A~~~L~~Lc~~~ 655 (744)
..+++.|.++......+.-|...- . ..=...+++ .||+..|+++|.. .+......++.+|..|+.+.
T Consensus 69 ~~~i~~L~~~~~~~~~L~~L~v~Lrt~~~~Wv~~Fl~-~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~ 147 (187)
T PF06371_consen 69 EWYIKKLKSRPSTSKILKSLRVSLRTNPISWVQEFLE-LGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTK 147 (187)
T ss_dssp HHHHHHHTTT--HHHHHHHHHHHHHHS-HHHHHHH-H-HHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSH
T ss_pred HHHHHHHHccCccHHHHHHHHHHhccCCchHHHHhcc-CCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccH
Confidence 334555555443333333333222 2 122445666 4889999998852 24567888999999998777
Q ss_pred HHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 004582 656 TKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLL 693 (744)
Q Consensus 656 ~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L 693 (744)
.+...++...+++..|+..+.+.+.+++..|..+|..+
T Consensus 148 ~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 148 YGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAAL 185 (187)
T ss_dssp HHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 77777777888999999999999999999999998765
No 233
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=75.60 E-value=29 Score=41.45 Aligned_cols=192 Identities=12% Similarity=0.093 Sum_probs=120.3
Q ss_pred hcCCCCCcccccccchHHHHHhhcchhHHHHHHHHHHhccChhhhHHHH---hcCCchhhhcccccCCH-HHHHHHHHHH
Q 004582 493 LSQSRDEMPLFHKDEICTFALFLDSEIMEEALEIIEVLSHQQNYASELV---ASGIIPSIIKFLDTGTR-ESRELAIKIL 568 (744)
Q Consensus 493 s~~~~nk~~iv~~Gai~~Lv~lL~s~~~e~A~~~L~~Ls~~~~~k~~I~---~~G~Ip~Lv~lL~s~~~-~~k~~A~~aL 568 (744)
+.....+...++.|+...|..+......+.....-..|+. ...+- ....++++.+.+.+... ...-.++.+|
T Consensus 491 A~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~----~i~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~al 566 (748)
T KOG4151|consen 491 AKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAG----KIDFPGERSYEVVKPLDSALHNDEKGLENFEALEAL 566 (748)
T ss_pred hhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhh----hcCCCCCchhhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence 4455567778899999999999754433322222222221 11110 13355566666554322 2445678899
Q ss_pred HHhcCCcc-hHHHHHhcCCcHhHHHHhcC--ccHHHHHHHHHHHhc-CHHHHH-HHHhhCCcHHHHHHHHcCCCHHHHHH
Q 004582 569 CNLSSGDN-IVYHILYLDCTSKLVRLLED--PILSSYCIKIIKALC-TSEARA-AVAESNPCIDSIAKLLETGTREEQEH 643 (744)
Q Consensus 569 ~nLs~~~~-n~~~iv~aG~v~~Lv~lL~~--~~l~~~al~~L~nLa-~~e~~~-~i~~~~g~V~~Lv~lL~~~s~~~~e~ 643 (744)
.||++..+ .+.++++.-+++.+-.++.+ +-++..++..+.||. ++.--. .+++....++.....+........-.
T Consensus 567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA 646 (748)
T KOG4151|consen 567 TNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELA 646 (748)
T ss_pred hcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhh
Confidence 99988755 57778877666665555533 457888999999999 765443 44553455677777776666666667
Q ss_pred HHHHHHHHhcCCHHHHH-HHHhCCcHHHHHHHhhcCCHHHHHHHHH
Q 004582 644 IVDVLLSLCHEHTKYCQ-LANTESIIQCVVDISVNGNSRGKETAKE 688 (744)
Q Consensus 644 A~~~L~~Lc~~~~~~~~-~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~ 688 (744)
+++++..+.+....++. ...-...-..++.+..+++..++.....
T Consensus 647 ~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~ 692 (748)
T KOG4151|consen 647 GAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLV 692 (748)
T ss_pred ccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhh
Confidence 77777777777666665 3333346677888888888877754333
No 234
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=75.50 E-value=1.8 Score=46.03 Aligned_cols=49 Identities=16% Similarity=0.338 Sum_probs=35.6
Q ss_pred CccccccccccCC--Ccee--cCCCccccHHHHHHHHccCCCCCCCCCCCCCCC
Q 004582 263 EEFKCSISLRLMY--DPVV--IASGKTFERVWIQKWFNAGHTTCPKTHMRLDNV 312 (744)
Q Consensus 263 ~~f~CPI~~~~m~--dPV~--~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~~ 312 (744)
+|+ ||+|.+-|- |-=. -+||...||-|....-+.-+..||.|+..+..+
T Consensus 14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 445 999999884 2222 378999999997665444577899999877654
No 235
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.87 E-value=1.8 Score=46.82 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=36.1
Q ss_pred CCCCCccccccccccCCCceecCCCccccHHHHHHHHccCCCCCCCCCCCC
Q 004582 259 LEPPEEFKCSISLRLMYDPVVIASGKTFERVWIQKWFNAGHTTCPKTHMRL 309 (744)
Q Consensus 259 ~~~p~~f~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l 309 (744)
.+.|..-.|-||.+=.++-|.++|||+.| |+.-.. ..++||+|++.+
T Consensus 300 ~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~--~l~~CPvCR~rI 346 (355)
T KOG1571|consen 300 RELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK--HLPQCPVCRQRI 346 (355)
T ss_pred cccCCCCceEEecCCccceeeecCCcEEE--chHHHh--hCCCCchhHHHH
Confidence 34455667999999999999999999988 554432 346799998754
No 236
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.61 E-value=48 Score=40.93 Aligned_cols=205 Identities=14% Similarity=0.144 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccc------cCCCHHHHHHHHHHHHHH-----hcCCCCCccccc
Q 004582 436 QCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAH------NLCDAKAQKDGAEVLLAI-----LSQSRDEMPLFH 504 (744)
Q Consensus 436 q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~------~~~d~~~q~~A~~~L~nL-----s~~~~nk~~iv~ 504 (744)
.+.-+.++|.+..-|...+....++|++-.|...|-... +..|.-+...-...|..+ +.+..|++.+-.
T Consensus 749 lcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavcenasNrmklht 828 (2799)
T KOG1788|consen 749 LCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVCENASNRMKLHT 828 (2799)
T ss_pred HHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHhhcchhhhheee
Confidence 444566777777777777778888888888877763221 223333333334444443 334455543221
Q ss_pred ccchHHHHHhhcchhHHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcC-----------
Q 004582 505 KDEICTFALFLDSEIMEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSS----------- 573 (744)
Q Consensus 505 ~Gai~~Lv~lL~s~~~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~----------- 573 (744)
.=.-..+-++|. +..|-..+..|..|.- ..+.-.+.|.......-..|+..++.+-.
T Consensus 829 vITsqtftsLLr----------esgllcvnler~viql--llElalevlvppfLtSEsaAcaeVfelednifavntPsGq 896 (2799)
T KOG1788|consen 829 VITSQTFTSLLR----------ESGLLCVNLERHVIQL--LLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQ 896 (2799)
T ss_pred eeeHHHHHHHHH----------HhccceecchHHHHHH--HHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCC
Confidence 111111122221 0011111122221110 01111122222222333445555555422
Q ss_pred CcchHHHHHhcCCcHhHHHHh--cCccHHHHHHHHHHHhc--CHHHHHHHHhhCCcHHHHHHHHc---CCCHHHHHHHHH
Q 004582 574 GDNIVYHILYLDCTSKLVRLL--EDPILSSYCIKIIKALC--TSEARAAVAESNPCIDSIAKLLE---TGTREEQEHIVD 646 (744)
Q Consensus 574 ~~~n~~~iv~aG~v~~Lv~lL--~~~~l~~~al~~L~nLa--~~e~~~~i~~~~g~V~~Lv~lL~---~~s~~~~e~A~~ 646 (744)
....+.+|..+|++..|++.+ ..+.+.-+-+..|..++ ++.|....-. .|||..|++++. +|+....-++..
T Consensus 897 fnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS-~gcvellleIiypflsgsspfLshalk 975 (2799)
T KOG1788|consen 897 FNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTS-AGCVELLLEIIYPFLSGSSPFLSHALK 975 (2799)
T ss_pred cCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhc-ccHHHHHHHHhhhhhcCCchHhhccHH
Confidence 123577889999999999876 45788888899999999 7777665555 799999999985 577777888888
Q ss_pred HHHHHhc
Q 004582 647 VLLSLCH 653 (744)
Q Consensus 647 ~L~~Lc~ 653 (744)
++..||.
T Consensus 976 IvemLga 982 (2799)
T KOG1788|consen 976 IVEMLGA 982 (2799)
T ss_pred HHHHHhh
Confidence 8888873
No 237
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=74.23 E-value=1.7e+02 Score=36.52 Aligned_cols=246 Identities=13% Similarity=0.041 Sum_probs=140.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCccc
Q 004582 423 TSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPL 502 (744)
Q Consensus 423 ~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~i 502 (744)
.++..|.+.+..+|..|+..+..++...+. .++ ..+|...++++.- .++..+=..|+.+|..++...--....
T Consensus 345 ~Lls~l~d~dt~VrWSaAKg~grvt~rlp~---~La-d~vi~svid~~~p---~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 345 HLLSALSDTDTVVRWSAAKGLGRVTSRLPP---ELA-DQVIGSVIDLFNP---AEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHhccCCcchhhHHHHHHHHHHHccCcH---HHH-HHHHHHHHHhcCc---CCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 466777888999999999999999988772 222 2466777776653 145777789999999886633221111
Q ss_pred ccccchHHHHHhhcc---------h--hHHHHHHHHHHhccChhhh--HHHHhcCCchhhhcccccCCHHHHHHHHHHHH
Q 004582 503 FHKDEICTFALFLDS---------E--IMEEALEIIEVLSHQQNYA--SELVASGIIPSIIKFLDTGTRESRELAIKILC 569 (744)
Q Consensus 503 v~~Gai~~Lv~lL~s---------~--~~e~A~~~L~~Ls~~~~~k--~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~ 569 (744)
-..+++.++.-|.- | +.+.|+-+.+.++...+-. +-+...=+--.|+..+.+....+|.+|..||.
T Consensus 418 -l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlq 496 (1133)
T KOG1943|consen 418 -LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQ 496 (1133)
T ss_pred -HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHH
Confidence 11355555554421 1 3356666666666532221 11111111122344556667789999999986
Q ss_pred HhcCCcchHHHHHhcCCcHhHHHHhcCcc-----HHHHHHHHHHHhcCHHHHHHHHhhCCcHHHHHHH-----HcCCCHH
Q 004582 570 NLSSGDNIVYHILYLDCTSKLVRLLEDPI-----LSSYCIKIIKALCTSEARAAVAESNPCIDSIAKL-----LETGTRE 639 (744)
Q Consensus 570 nLs~~~~n~~~iv~aG~v~~Lv~lL~~~~-----l~~~al~~L~nLa~~e~~~~i~~~~g~V~~Lv~l-----L~~~s~~ 639 (744)
.... +.|-+|-=++++...+ .+.+|-..| ...|.+..|....+++- +.+-++.
T Consensus 497 E~VG---------R~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l--------~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~ 559 (1133)
T KOG1943|consen 497 ENVG---------RQGNFPHGISLISTIDYFSVTNRSNCYLDL--------CVSIAEFSGYREPVFNHLLTKKVCHWDVK 559 (1133)
T ss_pred HHhc---------cCCCCCCchhhhhhcchhhhhhhhhHHHHH--------hHHHHhhhhHHHHHHHHHHhcccccccHH
Confidence 4433 3344443334442211 122222111 22222223334444443 3456899
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHH----HHHHHHHhhhcC
Q 004582 640 EQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKET----AKELIMLLDHCK 697 (744)
Q Consensus 640 ~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~----A~~lL~~L~~~~ 697 (744)
+|+.+..+|..|....++ -...+.+|+|++....++...+.- +..++..++...
T Consensus 560 irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~ 617 (1133)
T KOG1943|consen 560 IRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLE 617 (1133)
T ss_pred HHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhh
Confidence 999999999998765544 244568899999888887766654 444444554443
No 238
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.87 E-value=86 Score=37.70 Aligned_cols=250 Identities=13% Similarity=0.100 Sum_probs=122.4
Q ss_pred HHH-HhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcc
Q 004582 423 TSL-SKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMP 501 (744)
Q Consensus 423 ~ll-~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~ 501 (744)
.++ ..|.+-..-+..+|+.++..+...++. .+. .++..|--+|++ ..+..|-+|+.+|-.++.....+..
T Consensus 248 ~fl~s~l~~K~emV~~EaArai~~l~~~~~r---~l~--pavs~Lq~flss----p~~~lRfaAvRtLnkvAm~~P~~v~ 318 (865)
T KOG1078|consen 248 PFLESCLRHKSEMVIYEAARAIVSLPNTNSR---ELA--PAVSVLQLFLSS----PKVALRFAAVRTLNKVAMKHPQAVT 318 (865)
T ss_pred HHHHHHHhchhHHHHHHHHHHHhhccccCHh---hcc--hHHHHHHHHhcC----cHHHHHHHHHHHHHHHHHhCCcccc
Confidence 444 445566777888999999888755432 111 156666666766 6788889999999988764333221
Q ss_pred cccccchHHHHHhhcchhHHHHHHHHHHhccChhhhHHHHh--------------------------------cCCchhh
Q 004582 502 LFHKDEICTFALFLDSEIMEEALEIIEVLSHQQNYASELVA--------------------------------SGIIPSI 549 (744)
Q Consensus 502 iv~~Gai~~Lv~lL~s~~~e~A~~~L~~Ls~~~~~k~~I~~--------------------------------~G~Ip~L 549 (744)
.- +--++.||.-.+......|..+|. =+..+.+...++. .+.++.|
T Consensus 319 ~c-N~elE~lItd~NrsIat~AITtLL-KTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL 396 (865)
T KOG1078|consen 319 VC-NLDLESLITDSNRSIATLAITTLL-KTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFL 396 (865)
T ss_pred cc-chhHHhhhcccccchhHHHHHHHH-HhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHH
Confidence 11 111222222222222222222221 1222222222221 1223333
Q ss_pred hccccc-CCHHHHHHHHHHHHHhcC-CcchHHHHHhcCCcHhHHHHhcCccHHHHHHHHHHHhcCHHHHHHHHhhCCcHH
Q 004582 550 IKFLDT-GTRESRELAIKILCNLSS-GDNIVYHILYLDCTSKLVRLLEDPILSSYCIKIIKALCTSEARAAVAESNPCID 627 (744)
Q Consensus 550 v~lL~s-~~~~~k~~A~~aL~nLs~-~~~n~~~iv~aG~v~~Lv~lL~~~~l~~~al~~L~nLa~~e~~~~i~~~~g~V~ 627 (744)
.++|+. |.-+.+.....++..+.. +++.|. -++..|..++.|-....-+..+|..|- .||-.+... ...|.
T Consensus 397 ~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce~~~i~~rILhlLG-~EgP~a~~P-skyir 469 (865)
T KOG1078|consen 397 SNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCEFTQIAVRILHLLG-KEGPKAPNP-SKYIR 469 (865)
T ss_pred HHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhccchHHHHHHHHHHh-ccCCCCCCc-chhhH
Confidence 333332 223444444444443332 222222 123334444444444444444444443 001011111 11222
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 004582 628 SIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLDH 695 (744)
Q Consensus 628 ~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~~ 695 (744)
.+...+--.+..++..|+.+|..+..+++. ....+.-.|...+.+.++.+|+.|...|..+.+
T Consensus 470 ~iyNRviLEn~ivRaaAv~alaKfg~~~~~-----l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 470 FIYNRVILENAIVRAAAVSALAKFGAQDVV-----LLPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred HHhhhhhhhhhhhHHHHHHHHHHHhcCCCC-----ccccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 222222234556777888888877633322 233445566677788999999999999999984
No 239
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=73.01 E-value=19 Score=36.83 Aligned_cols=136 Identities=14% Similarity=0.232 Sum_probs=93.0
Q ss_pred HHHHHHHHHhccChhhhHHHHhcCCchhh---hcccccCCH--HHHHHHHHHHHHhcCCcc--hHHHHHhcCCcHhHHHH
Q 004582 521 EEALEIIEVLSHQQNYASELVASGIIPSI---IKFLDTGTR--ESRELAIKILCNLSSGDN--IVYHILYLDCTSKLVRL 593 (744)
Q Consensus 521 e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~L---v~lL~s~~~--~~k~~A~~aL~nLs~~~~--n~~~iv~aG~v~~Lv~l 593 (744)
.+|+.+|.-++++++.|..+.++..--.| +....+.+. -.|-.+++++..|..+++ ....+....+||.++++
T Consensus 118 cnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI 197 (315)
T COG5209 118 CNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI 197 (315)
T ss_pred HHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence 57889999999999999998876533223 333333322 488889999999998765 45556778999999999
Q ss_pred hcCcc-H-HHHHHHHHHHhc-CHHHHHHHHhhC-------CcHHHHHH-HHcCCCHHHHHHHHHHHHHHhcCCH
Q 004582 594 LEDPI-L-SSYCIKIIKALC-TSEARAAVAESN-------PCIDSIAK-LLETGTREEQEHIVDVLLSLCHEHT 656 (744)
Q Consensus 594 L~~~~-l-~~~al~~L~nLa-~~e~~~~i~~~~-------g~V~~Lv~-lL~~~s~~~~e~A~~~L~~Lc~~~~ 656 (744)
+..++ + +.-|+-++..+- ++.|-+-|.++- ..+..++. +.+.++.+...+++++-..||....
T Consensus 198 me~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~ 271 (315)
T COG5209 198 MELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPH 271 (315)
T ss_pred HHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHh
Confidence 97653 2 344555666666 666665554431 22333333 3356888899999999999986543
No 240
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=72.36 E-value=38 Score=35.64 Aligned_cols=94 Identities=18% Similarity=0.218 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhcCC-cchHHHHHhcCCcHhHHHHhc---CccHHHHHHHHHHHhc--CHHHHHHHHhhCCcHHHHHHHH
Q 004582 560 SRELAIKILCNLSSG-DNIVYHILYLDCTSKLVRLLE---DPILSSYCIKIIKALC--TSEARAAVAESNPCIDSIAKLL 633 (744)
Q Consensus 560 ~k~~A~~aL~nLs~~-~~n~~~iv~aG~v~~Lv~lL~---~~~l~~~al~~L~nLa--~~e~~~~i~~~~g~V~~Lv~lL 633 (744)
....|+.+|..++.. +..+..+.+..++..|+++|. .+.+...++.+|..+- ++.|...+-+ .+++..++.++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~-~~Gl~~v~~ll 185 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEE-LNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHH-hCCHHHHHHHH
Confidence 466788999988754 556666788999999999993 3567777888777666 8888888877 58899999999
Q ss_pred cC--CCHHHHHHHHHHHHHHhcC
Q 004582 634 ET--GTREEQEHIVDVLLSLCHE 654 (744)
Q Consensus 634 ~~--~s~~~~e~A~~~L~~Lc~~ 654 (744)
++ .+.+++-.++..|+-....
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHcc
Confidence 75 5678888888888877644
No 241
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.01 E-value=2.3 Score=45.43 Aligned_cols=47 Identities=13% Similarity=0.059 Sum_probs=39.7
Q ss_pred CccccccccccCCCceecCCCccccHHHHHHHHccCCCCCCCCCCCCC
Q 004582 263 EEFKCSISLRLMYDPVVIASGKTFERVWIQKWFNAGHTTCPKTHMRLD 310 (744)
Q Consensus 263 ~~f~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~ 310 (744)
+|=.||||-.---..|..||||.-|..||.+++-. .+.|=.|+....
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~ 467 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVI 467 (489)
T ss_pred ccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEecceee
Confidence 67899999888888899999999999999999864 567888866544
No 242
>PF04641 Rtf2: Rtf2 RING-finger
Probab=71.95 E-value=4 Score=43.04 Aligned_cols=36 Identities=19% Similarity=0.373 Sum_probs=31.7
Q ss_pred CccccccccccCCCceec-CCCccccHHHHHHHHccC
Q 004582 263 EEFKCSISLRLMYDPVVI-ASGKTFERVWIQKWFNAG 298 (744)
Q Consensus 263 ~~f~CPI~~~~m~dPV~~-~~G~ty~r~~I~~w~~~~ 298 (744)
.-+.|+||++.+++||+. .-|+-|.+.+|-.|+-..
T Consensus 33 ~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~ 69 (260)
T PF04641_consen 33 RWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDK 69 (260)
T ss_pred CcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhc
Confidence 357899999999999976 689999999999998653
No 243
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=71.72 E-value=1.3e+02 Score=33.50 Aligned_cols=160 Identities=14% Similarity=0.176 Sum_probs=99.8
Q ss_pred HHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccc----c------------------CCC----HHHHHHHHHHHHHH
Q 004582 439 AVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAH----N------------------LCD----AKAQKDGAEVLLAI 492 (744)
Q Consensus 439 Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~----~------------------~~d----~~~q~~A~~~L~nL 492 (744)
|+..|..+.......-......|++..+++.|...+ . ..+ +--|...++.|+++
T Consensus 4 av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk~ 83 (379)
T PF06025_consen 4 AVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLKF 83 (379)
T ss_pred HHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHHH
Confidence 455555555554444555566677777766654321 0 001 11244555555555
Q ss_pred ----hc-CCCC--Ccc-ccc-ccchHHHHHhhcch------hHHHHHHHHHHhccChhh-hHHHHhcCCchhhhcccc-c
Q 004582 493 ----LS-QSRD--EMP-LFH-KDEICTFALFLDSE------IMEEALEIIEVLSHQQNY-ASELVASGIIPSIIKFLD-T 555 (744)
Q Consensus 493 ----s~-~~~n--k~~-iv~-~Gai~~Lv~lL~s~------~~e~A~~~L~~Ls~~~~~-k~~I~~~G~Ip~Lv~lL~-s 555 (744)
.. .... +.. +++ ......|..++... +-..|+.++..+-.++.. -..+.++|.++.+++.+. .
T Consensus 84 l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~ 163 (379)
T PF06025_consen 84 LSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAK 163 (379)
T ss_pred HHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhcc
Confidence 33 2222 111 334 23344444555432 235688888777666655 555668999999999887 4
Q ss_pred C---CHHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcCcc
Q 004582 556 G---TRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLEDPI 598 (744)
Q Consensus 556 ~---~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~~ 598 (744)
+ +.++...--.+|..||.+......+.+.+.++.+++++.+++
T Consensus 164 ~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 164 GILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred CCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHH
Confidence 3 456776677788899999999999999999999999997763
No 244
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.51 E-value=1.2e+02 Score=36.64 Aligned_cols=206 Identities=17% Similarity=0.162 Sum_probs=129.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcc
Q 004582 422 LTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMP 501 (744)
Q Consensus 422 ~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~ 501 (744)
.++.++|.+.....++.|+..|-.+...+.+ -...+|.+|+-..+ .|.++++---.-|+..+....+-..
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~d------vS~~Fp~VVKNVas----kn~EVKkLVyvYLlrYAEeqpdLAL 107 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKD------VSLLFPAVVKNVAS----KNIEVKKLVYVYLLRYAEEQPDLAL 107 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHhhc----cCHHHHHHHHHHHHHHhhcCCCcee
Confidence 4688889888888888998877766544333 13568899998887 7899999888888888777666433
Q ss_pred cccccchHHHHHhhcchhHHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCCc-chHHH
Q 004582 502 LFHKDEICTFALFLDSEIMEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSGD-NIVYH 580 (744)
Q Consensus 502 iv~~Gai~~Lv~lL~s~~~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~-~n~~~ 580 (744)
+ -|..+-+-|..+++.-=+.+|..|+. .|..+...=++-.+-+.....++.+|+.|+.||-.|-+-+ +.+.+
T Consensus 108 L----SIntfQk~L~DpN~LiRasALRvlSs---IRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~q 180 (968)
T KOG1060|consen 108 L----SINTFQKALKDPNQLIRASALRVLSS---IRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQ 180 (968)
T ss_pred e----eHHHHHhhhcCCcHHHHHHHHHHHHh---cchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHH
Confidence 2 24444555666666555555665654 2333322222223334456677889999999999886554 44444
Q ss_pred HHhcCCcHhHHHHhcC--ccHHHHHHHHHHHhcCHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Q 004582 581 ILYLDCTSKLVRLLED--PILSSYCIKIIKALCTSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCH 653 (744)
Q Consensus 581 iv~aG~v~~Lv~lL~~--~~l~~~al~~L~nLa~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~ 653 (744)
++ ..+-.||.| +-++-.|+.+...+| |+.-.-|.. --..|-.+|..-+.-.|-..+..|..-|+
T Consensus 181 L~-----e~I~~LLaD~splVvgsAv~AF~evC-PerldLIHk---nyrklC~ll~dvdeWgQvvlI~mL~RYAR 246 (968)
T KOG1060|consen 181 LE-----EVIKKLLADRSPLVVGSAVMAFEEVC-PERLDLIHK---NYRKLCRLLPDVDEWGQVVLINMLTRYAR 246 (968)
T ss_pred HH-----HHHHHHhcCCCCcchhHHHHHHHHhc-hhHHHHhhH---HHHHHHhhccchhhhhHHHHHHHHHHHHH
Confidence 32 334445655 456666666666665 444444433 24666777766666667777777766663
No 245
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=71.24 E-value=70 Score=36.11 Aligned_cols=199 Identities=14% Similarity=0.175 Sum_probs=110.2
Q ss_pred ChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcccccccchHHHHHhh-cc---hhHHHHHHHHHHhccChhhh
Q 004582 462 YVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPLFHKDEICTFALFL-DS---EIMEEALEIIEVLSHQQNYA 537 (744)
Q Consensus 462 ~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~iv~~Gai~~Lv~lL-~s---~~~e~A~~~L~~Ls~~~~~k 537 (744)
.+..++.+..+. .++..+..++..|..+...-.... .-...+..+...+ .. .....+..++..++ |
T Consensus 190 ll~~l~~~~~~~---~~~~~~~~~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~-----K 259 (415)
T PF12460_consen 190 LLQSLLNLALSS---EDEFSRLAALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWIT-----K 259 (415)
T ss_pred HHHHHHHHHHcC---CChHHHHHHHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHH-----H
Confidence 455566655442 456677777777776654311111 0012223232222 11 11234444443332 2
Q ss_pred HHHHh-----cCCchhhhcccccCCHHHHHHHHHHHHHhcCC-c--------chHHHHHhc----CCcHhHHHHhcC--c
Q 004582 538 SELVA-----SGIIPSIIKFLDTGTRESRELAIKILCNLSSG-D--------NIVYHILYL----DCTSKLVRLLED--P 597 (744)
Q Consensus 538 ~~I~~-----~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~-~--------~n~~~iv~a----G~v~~Lv~lL~~--~ 597 (744)
..++. ...+..|+++|.+ .+....|+.++.-|..+ + .|.+.+.+. -.+|.|++-..+ +
T Consensus 260 aLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~ 337 (415)
T PF12460_consen 260 ALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD 337 (415)
T ss_pred HHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh
Confidence 33332 2245667777766 56677788888877766 2 233334443 556666666644 2
Q ss_pred cHHHHHHHHHHHhc--CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHH
Q 004582 598 ILSSYCIKIIKALC--TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDI 674 (744)
Q Consensus 598 ~l~~~al~~L~nLa--~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~L 674 (744)
..+...+.+|.++- .|...- +-+-...+|.|++-|+..++.++..++.+|..+....++.... .-...||.|+.+
T Consensus 338 ~~k~~yL~ALs~ll~~vP~~vl-~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~-hl~sLI~~LL~l 414 (415)
T PF12460_consen 338 EIKSNYLTALSHLLKNVPKSVL-LPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISE-HLSSLIPRLLKL 414 (415)
T ss_pred hhHHHHHHHHHHHHhhCCHHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHH-HHHHHHHHHHhc
Confidence 36777888888888 342221 1122357888889898899999999999999998776442222 111355555543
No 246
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=70.47 E-value=28 Score=41.98 Aligned_cols=137 Identities=12% Similarity=0.025 Sum_probs=85.5
Q ss_pred cHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCc
Q 004582 421 DLTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEM 500 (744)
Q Consensus 421 ~~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~ 500 (744)
++++++...+.+.+.++--=.-|...++.+++- ++. ++..+.+=|.+ .|+.+|-.|+.++..+ +.
T Consensus 57 f~dViK~~~trd~ElKrL~ylYl~~yak~~P~~--~lL---avNti~kDl~d----~N~~iR~~AlR~ls~l------~~ 121 (757)
T COG5096 57 FPDVIKNVATRDVELKRLLYLYLERYAKLKPEL--ALL---AVNTIQKDLQD----PNEEIRGFALRTLSLL------RV 121 (757)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH--HHH---HHHHHHhhccC----CCHHHHHHHHHHHHhc------Ch
Confidence 345666666777777777777777777766521 111 23344444555 6888888888877665 11
Q ss_pred ccccccchHHHHHhhcchh---HHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCC
Q 004582 501 PLFHKDEICTFALFLDSEI---MEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSG 574 (744)
Q Consensus 501 ~iv~~Gai~~Lv~lL~s~~---~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~ 574 (744)
.-+-..+++++.+++..+. ...|+-++..+=. -.+....+.|.+..+..++.+.++.+..+|+.+|+.+--.
T Consensus 122 ~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 122 KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 1122346677777776553 3455555544432 3344555677888888888888888888888888877543
No 247
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=69.93 E-value=32 Score=38.42 Aligned_cols=84 Identities=11% Similarity=0.085 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhc-ccccCCCHHHHHHHHHHHHHHhcCCCCCcccccccchHHHH
Q 004582 434 GSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLK-DAHNLCDAKAQKDGAEVLLAILSQSRDEMPLFHKDEICTFA 512 (744)
Q Consensus 434 e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~-~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~iv~~Gai~~Lv 512 (744)
.+=..|+..+..+...++..-..+.+.|.++.+++.+. ... -.+.++...--.+|..+|.+.+....+.+.++++.++
T Consensus 124 ~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i-~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f 202 (379)
T PF06025_consen 124 SVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGI-LPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLF 202 (379)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCC-CCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHH
Confidence 33445788888888888888888999999999999887 432 2456777777788888899999988888999999999
Q ss_pred Hhhcch
Q 004582 513 LFLDSE 518 (744)
Q Consensus 513 ~lL~s~ 518 (744)
+++.+.
T Consensus 203 ~if~s~ 208 (379)
T PF06025_consen 203 EIFTSP 208 (379)
T ss_pred HHhCCH
Confidence 998654
No 248
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=68.68 E-value=9.5 Score=29.78 Aligned_cols=33 Identities=15% Similarity=0.388 Sum_probs=22.5
Q ss_pred CccccccccccCCCceecCCCccccHHHHHHHHcc------CCCCCCCCCC
Q 004582 263 EEFKCSISLRLMYDPVVIASGKTFERVWIQKWFNA------GHTTCPKTHM 307 (744)
Q Consensus 263 ~~f~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~~------~~~~cP~t~~ 307 (744)
+.|.||.|++ .|+...+.+.+.. ..-.||+|..
T Consensus 1 ~~f~CP~C~~------------~~~~~~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGK------------GFSESSLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCC------------ccCHHHHHHHHHhHCcCCCCCccCCCchh
Confidence 3689999876 5666667766542 2346999964
No 249
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=67.28 E-value=4.3 Score=34.23 Aligned_cols=43 Identities=23% Similarity=0.444 Sum_probs=31.7
Q ss_pred ccccccccCC----Cceec-CCCccccHHHHHHHHccCCCCCCCCCCCC
Q 004582 266 KCSISLRLMY----DPVVI-ASGKTFERVWIQKWFNAGHTTCPKTHMRL 309 (744)
Q Consensus 266 ~CPI~~~~m~----dPV~~-~~G~ty~r~~I~~w~~~~~~~cP~t~~~l 309 (744)
.||-|+-=|. =||+- -|.|.|---||.+|++. ...||.++|+.
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w 80 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTW 80 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCcee
Confidence 4555555441 13444 68999999999999987 67899999875
No 250
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.97 E-value=59 Score=40.73 Aligned_cols=213 Identities=16% Similarity=0.155 Sum_probs=114.5
Q ss_pred CCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcccccccchHH
Q 004582 431 RPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPLFHKDEICT 510 (744)
Q Consensus 431 ~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~iv~~Gai~~ 510 (744)
.+..+|.++-..|..+... +....... .-+..+-+.|.+.....+..+|..++.+|..+.....+-....-.-.|+-
T Consensus 666 ~~~~vQkK~yrlL~~l~~~-~s~~~~~~--q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~E 742 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSS-PSGEGLVE--QRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPE 742 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcC-CchhhHHH--HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3678889999999888765 22211111 12333334443322235667777777777777543221110000112222
Q ss_pred HHHhhcch---hHHHHHHHHHHhccChhhhHHHHhcC------CchhhhcccccC--CHHHHHHH--HHHHHHhcCCcch
Q 004582 511 FALFLDSE---IMEEALEIIEVLSHQQNYASELVASG------IIPSIIKFLDTG--TRESRELA--IKILCNLSSGDNI 577 (744)
Q Consensus 511 Lv~lL~s~---~~e~A~~~L~~Ls~~~~~k~~I~~~G------~Ip~Lv~lL~s~--~~~~k~~A--~~aL~nLs~~~~n 577 (744)
++-.++.. ...+|..+|.++.. -....+.| .|...+.++.-| ....+..| +-++..+.. +
T Consensus 743 vIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~---e 815 (1176)
T KOG1248|consen 743 VILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ---E 815 (1176)
T ss_pred HHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH---H
Confidence 22223221 23567777776663 11111222 455555555444 22222222 333333332 2
Q ss_pred HHHHHhcCCcHhHHHHh------cCccHHHHHHHHHHHhc--CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHH
Q 004582 578 VYHILYLDCTSKLVRLL------EDPILSSYCIKIIKALC--TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLL 649 (744)
Q Consensus 578 ~~~iv~aG~v~~Lv~lL------~~~~l~~~al~~L~nLa--~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~ 649 (744)
-..+...+.++.+++.+ ..++++..|+..+..+. .|+-...-.. +..++.+..++......++...-..|-
T Consensus 816 ~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~-~~LL~sll~ls~d~k~~~r~Kvr~Lle 894 (1176)
T KOG1248|consen 816 FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL-EELLPSLLALSHDHKIKVRKKVRLLLE 894 (1176)
T ss_pred HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH-HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 23344445556665554 23678999999999999 5655554444 357888888888878888888877777
Q ss_pred HHhcC
Q 004582 650 SLCHE 654 (744)
Q Consensus 650 ~Lc~~ 654 (744)
-|+..
T Consensus 895 kLirk 899 (1176)
T KOG1248|consen 895 KLIRK 899 (1176)
T ss_pred HHHHH
Confidence 77744
No 251
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=66.37 E-value=34 Score=35.05 Aligned_cols=136 Identities=15% Similarity=0.130 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhc--C-----ccHHHHHHHHHHHhc---CHHHHHHHHhhCCcHHH
Q 004582 559 ESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLE--D-----PILSSYCIKIIKALC---TSEARAAVAESNPCIDS 628 (744)
Q Consensus 559 ~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~-----~~l~~~al~~L~nLa---~~e~~~~i~~~~g~V~~ 628 (744)
.-.-+|+..|..++++++.+..++++.+--.|..+|. + +-++-.++++++.|. +++....+.. ...||.
T Consensus 115 nRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLlt-TeivPL 193 (315)
T COG5209 115 NRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLT-TEIVPL 193 (315)
T ss_pred hHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHh-hhHHHH
Confidence 3445788888999999999999999887666777762 1 236778999999999 3556666666 489999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCHH---HHHHHHhCCcH----HHHHH-HhhcCCHHHHHHHHHHHHHhhh
Q 004582 629 IAKLLETGTREEQEHIVDVLLSLCHEHTK---YCQLANTESII----QCVVD-ISVNGNSRGKETAKELIMLLDH 695 (744)
Q Consensus 629 Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~---~~~~v~~~G~i----~~Lv~-Ll~~~s~~~r~~A~~lL~~L~~ 695 (744)
++++++.|+..-+.-|+.++.-+-.++.+ .++...+--++ ..++. +...++-|.-+.|...--.|++
T Consensus 194 cLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd 268 (315)
T COG5209 194 CLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD 268 (315)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC
Confidence 99999999999999999988777655543 23333333332 22222 3445666666666655444443
No 252
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=66.03 E-value=66 Score=39.12 Aligned_cols=256 Identities=12% Similarity=0.055 Sum_probs=126.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhh-cchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCc
Q 004582 422 LTSLSKLASRPWGSQCDAVENIKKLLKD-NGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEM 500 (744)
Q Consensus 422 ~~ll~~L~s~~~e~q~~Al~~Lr~Lak~-~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~ 500 (744)
+.+...+....++.+..++.....++.. +...+..+.....+|.+-.+..+ .+..++...+.....+..--.
T Consensus 358 ~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d----~~~~vr~a~a~~~~~~~p~~~--- 430 (759)
T KOG0211|consen 358 PPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLD----NALHVRSALASVITGLSPILP--- 430 (759)
T ss_pred hhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhc----ccchHHHHHhccccccCccCC---
Confidence 3444555555677777777766666643 33445566666667877777766 566777666666666543221
Q ss_pred ccccccc----hHHHHHhhcchhHHHHHHHHHHhccChh----hhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhc
Q 004582 501 PLFHKDE----ICTFALFLDSEIMEEALEIIEVLSHQQN----YASELVASGIIPSIIKFLDTGTRESRELAIKILCNLS 572 (744)
Q Consensus 501 ~iv~~Ga----i~~Lv~lL~s~~~e~A~~~L~~Ls~~~~----~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs 572 (744)
.... .+.++..++....+.-..+...++..+. .-..+.....+|.++.+-.....+++......+..++
T Consensus 431 ---k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la 507 (759)
T KOG0211|consen 431 ---KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLA 507 (759)
T ss_pred ---cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHH
Confidence 1222 3333334443322222222211111111 1222233445666666655555667777777777766
Q ss_pred CCcchHHHHHhcCCcHhHHHHhcC--ccHHHHHHHHHHHhcCHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004582 573 SGDNIVYHILYLDCTSKLVRLLED--PILSSYCIKIIKALCTSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLS 650 (744)
Q Consensus 573 ~~~~n~~~iv~aG~v~~Lv~lL~~--~~l~~~al~~L~nLa~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~ 650 (744)
.... ..+...-.-+.+..-+.+ -.+.+.|+..|..++-.-|...-.. -.++.++.+...++-..|...+..+..
T Consensus 508 ~q~~--~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~--~~i~k~L~~~~q~~y~~R~t~l~si~~ 583 (759)
T KOG0211|consen 508 LQLG--VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARL--EEIPKLLAMDLQDNYLVRMTTLFSIHE 583 (759)
T ss_pred Hhhh--hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHH--HhhHHHHHHhcCcccchhhHHHHHHHH
Confidence 5544 222211111111112222 2466777777777761111111111 235555555554433333333333332
Q ss_pred HhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 004582 651 LCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLD 694 (744)
Q Consensus 651 Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~ 694 (744)
|+. ...+.+...-.+|.+..+..+..+.+|-++++.|..+.
T Consensus 584 la~---v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~ 624 (759)
T KOG0211|consen 584 LAE---VLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKIL 624 (759)
T ss_pred HHH---HhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHH
Confidence 221 11122333445677777888888888888777776553
No 253
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=65.66 E-value=2.6 Score=35.21 Aligned_cols=49 Identities=24% Similarity=0.329 Sum_probs=32.9
Q ss_pred CCCccccccccccCCC-ceec-CCCccccHHHHHHHHcc--CCCCCCCCCCCC
Q 004582 261 PPEEFKCSISLRLMYD-PVVI-ASGKTFERVWIQKWFNA--GHTTCPKTHMRL 309 (744)
Q Consensus 261 ~p~~f~CPI~~~~m~d-PV~~-~~G~ty~r~~I~~w~~~--~~~~cP~t~~~l 309 (744)
.|.+=.||-|.-.=-| |.+. -|-|.|-+-||.+|+.. ....||.|+|..
T Consensus 28 m~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 28 MPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred cccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 4444455555433222 3344 68899999999999974 346799999864
No 254
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=65.57 E-value=1.7e+02 Score=34.08 Aligned_cols=215 Identities=9% Similarity=0.013 Sum_probs=127.6
Q ss_pred CCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCC-------------
Q 004582 430 SRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQS------------- 496 (744)
Q Consensus 430 s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~------------- 496 (744)
..+.++|..|...|..+..-...--....+.-......+..++ .+.++...|+..-.-+|...
T Consensus 232 ~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks----~nd~va~qavEfWsticeEeid~~~e~~~~pe~ 307 (858)
T COG5215 232 GNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKS----QNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEV 307 (858)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cchHHHHHHHHHHHHHHHHHhhhHHHHhhcccC
Confidence 4577889999999988876544443444554444555667777 67777777777665554311
Q ss_pred ----CCCcccccccchHHHHHhhcch----------hHHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHH
Q 004582 497 ----RDEMPLFHKDEICTFALFLDSE----------IMEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRE 562 (744)
Q Consensus 497 ----~nk~~iv~~Gai~~Lv~lL~s~----------~~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~ 562 (744)
.+-....-++++|.|+.+|... ....|..+|...+.. ....|++. .+..+=.-+++++-.-++
T Consensus 308 p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~--~gd~i~~p-Vl~FvEqni~~~~w~nre 384 (858)
T COG5215 308 PAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL--KGDKIMRP-VLGFVEQNIRSESWANRE 384 (858)
T ss_pred chhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH--hhhHhHHH-HHHHHHHhccCchhhhHH
Confidence 0111112346889999999541 123456666655542 23344432 333333445667777889
Q ss_pred HHHHHHHHhcCCcc-hHHHHHhcCCcHhHHHHhcCcc--HHHHHHHHHHHhc-CHHHHHHHHhhCCcHHHHHHHHc---C
Q 004582 563 LAIKILCNLSSGDN-IVYHILYLDCTSKLVRLLEDPI--LSSYCIKIIKALC-TSEARAAVAESNPCIDSIAKLLE---T 635 (744)
Q Consensus 563 ~A~~aL~nLs~~~~-n~~~iv~aG~v~~Lv~lL~~~~--l~~~al~~L~nLa-~~e~~~~i~~~~g~V~~Lv~lL~---~ 635 (744)
.|+.|+..+...+. .+..-+-..++|.+..++.|+- +++.++|+++.++ +- ..++.-.|-++..|.-.. .
T Consensus 385 aavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v---a~~i~p~~Hl~~~vsa~liGl~ 461 (858)
T COG5215 385 AAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV---AMIISPCGHLVLEVSASLIGLM 461 (858)
T ss_pred HHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH---HHhcCccccccHHHHHHHhhhh
Confidence 99999988876654 2222244578898888888764 5788899999888 31 111221233333222221 2
Q ss_pred CCHHHHHHHHHHHHHHhcC
Q 004582 636 GTREEQEHIVDVLLSLCHE 654 (744)
Q Consensus 636 ~s~~~~e~A~~~L~~Lc~~ 654 (744)
+.|..-.++.+...++..+
T Consensus 462 D~p~~~~ncsw~~~nlv~h 480 (858)
T COG5215 462 DCPFRSINCSWRKENLVDH 480 (858)
T ss_pred ccchHHhhhHHHHHhHHHh
Confidence 4566777777777777644
No 255
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=64.54 E-value=37 Score=39.69 Aligned_cols=116 Identities=20% Similarity=0.324 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHHhcCC-cchHHHHHhcCCcHhHHHHhcCc--cHHHHHHHHHHHhc--CHHHHHHHHhhCCcHHHHH
Q 004582 556 GTRESRELAIKILCNLSSG-DNIVYHILYLDCTSKLVRLLEDP--ILSSYCIKIIKALC--TSEARAAVAESNPCIDSIA 630 (744)
Q Consensus 556 ~~~~~k~~A~~aL~nLs~~-~~n~~~iv~aG~v~~Lv~lL~~~--~l~~~al~~L~nLa--~~e~~~~i~~~~g~V~~Lv 630 (744)
|+...|..|+..|.....+ ++- +.-+|.++++|..|. .++..|+..|-.+| +++.... +++.|+
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l-----~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k------vaDvL~ 102 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDL-----QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK------VADVLV 102 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGG-----HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH------HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhh-----HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH------HHHHHH
Confidence 5667777777777655443 332 224556677777554 46778888888888 3444443 356788
Q ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhh---cCCHHHHHHHHHHH
Q 004582 631 KLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISV---NGNSRGKETAKELI 690 (744)
Q Consensus 631 ~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~---~~s~~~r~~A~~lL 690 (744)
+||.+.++.....+-.+|..|-..++. +.+..|..-+. ++++.+|+++..-|
T Consensus 103 QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl 157 (556)
T PF05918_consen 103 QLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFL 157 (556)
T ss_dssp HHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHH
Confidence 888888888777777777777655543 22333333333 56677777776654
No 256
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=63.81 E-value=2 Score=53.37 Aligned_cols=43 Identities=21% Similarity=0.415 Sum_probs=38.4
Q ss_pred CccccccccccCC-CceecCCCccccHHHHHHHHccCCCCCCCCC
Q 004582 263 EEFKCSISLRLMY-DPVVIASGKTFERVWIQKWFNAGHTTCPKTH 306 (744)
Q Consensus 263 ~~f~CPI~~~~m~-dPV~~~~G~ty~r~~I~~w~~~~~~~cP~t~ 306 (744)
..|.|+||+++|+ -=-+.-|||-||-.|++-|+.. +..||.|+
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~k 1195 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICK 1195 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchh
Confidence 4569999999999 7778899999999999999985 67899996
No 257
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=63.79 E-value=2e+02 Score=30.40 Aligned_cols=62 Identities=15% Similarity=0.184 Sum_probs=47.5
Q ss_pred CCcHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 004582 623 NPCIDSIAKLLE--TGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLDH 695 (744)
Q Consensus 623 ~g~V~~Lv~lL~--~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~~ 695 (744)
.-.|+.|.+.|. +..|-+|..|+.+|..++.. .+++.|.+.+.+..+-+++.+..+|..+.-
T Consensus 217 ~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e-----------~~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 217 PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE-----------DCVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-----------HHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 345788888885 35788888888888887522 246778899999999999999888877653
No 258
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=63.40 E-value=31 Score=38.93 Aligned_cols=111 Identities=13% Similarity=0.142 Sum_probs=84.5
Q ss_pred CCcHhHHHHhcCccHHHHHHHHHHHhc-C-HHH-------------HHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHH
Q 004582 585 DCTSKLVRLLEDPILSSYCIKIIKALC-T-SEA-------------RAAVAESNPCIDSIAKLLETGTREEQEHIVDVLL 649 (744)
Q Consensus 585 G~v~~Lv~lL~~~~l~~~al~~L~nLa-~-~e~-------------~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~ 649 (744)
..+..|+.+|.++++...++..+..|. . ++. |+.+.. ..+|.|++-.+..+...+.+.+.+|.
T Consensus 271 ~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~--~~~p~L~~~~~~~~~~~k~~yL~ALs 348 (415)
T PF12460_consen 271 ELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT--QVLPKLLEGFKEADDEIKSNYLTALS 348 (415)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH--HHHHHHHHHHhhcChhhHHHHHHHHH
Confidence 456778888988888888998888888 5 432 455555 46888888888877778999999999
Q ss_pred HHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcC
Q 004582 650 SLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLDHCK 697 (744)
Q Consensus 650 ~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~~~~ 697 (744)
.+..+-+...-.-.-...+|.|++-+...+..++..+...|..+-+..
T Consensus 349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 349 HLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 998776543222222348999999999999999999999988776443
No 259
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=62.76 E-value=21 Score=43.39 Aligned_cols=208 Identities=12% Similarity=0.106 Sum_probs=123.9
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCcccccccchHHHHHhhcchhH-HHHHHHHHHhccChh--------------hhHHHHh
Q 004582 478 DAKAQKDGAEVLLAILSQSRDEMPLFHKDEICTFALFLDSEIM-EEALEIIEVLSHQQN--------------YASELVA 542 (744)
Q Consensus 478 d~~~q~~A~~~L~nLs~~~~nk~~iv~~Gai~~Lv~lL~s~~~-e~A~~~L~~Ls~~~~--------------~k~~I~~ 542 (744)
+...++.|...|..+.+.---|..--..-....|+++|+.+.. ..|+.++..+..+.. +|..+.
T Consensus 787 s~dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF- 865 (1030)
T KOG1967|consen 787 SLDLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSGPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF- 865 (1030)
T ss_pred CcchhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCCccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-
Confidence 4455666666666663311001111112244567777766433 344444444443321 122221
Q ss_pred cCCchhhhcccccCCHHHHHHHHHHHHHhcCCcchHHHHHh--cCCcHhHHHHhc--CccHHHHHHHHHHHhc--CHHHH
Q 004582 543 SGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIVYHILY--LDCTSKLVRLLE--DPILSSYCIKIIKALC--TSEAR 616 (744)
Q Consensus 543 ~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~iv~--aG~v~~Lv~lL~--~~~l~~~al~~L~nLa--~~e~~ 616 (744)
...+|.|+....+.+...|-+=+.+|.++-.+-.- ..+.. ....|.|++-|. |..++-.++.++..+. .+.-.
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 45788888888877777888888999988775442 22221 255666666664 4455667777776665 33222
Q ss_pred HHHHhhCCcHHHHHHHHcCCC---HHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHH
Q 004582 617 AAVAESNPCIDSIAKLLETGT---REEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKEL 689 (744)
Q Consensus 617 ~~i~~~~g~V~~Lv~lL~~~s---~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~l 689 (744)
..=+. ..||.++.+=++.+ ..+|+.|+..|..|...-+...-.-.+..++..|...+.+...-+|+.|+..
T Consensus 945 t~~~~--Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 945 TEHLS--TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred hHHHh--HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 22233 46777777665433 6799999999999987433333334455678888888888888888888764
No 260
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=61.98 E-value=46 Score=34.92 Aligned_cols=133 Identities=20% Similarity=0.177 Sum_probs=87.8
Q ss_pred CCHHHHHHHHHHHHHhcCCcchHHHHHhc-C-CcHhHHHHh-c-----CccHHHHHHHHHHHhc--CHHHH-HHHHhhCC
Q 004582 556 GTRESRELAIKILCNLSSGDNIVYHILYL-D-CTSKLVRLL-E-----DPILSSYCIKIIKALC--TSEAR-AAVAESNP 624 (744)
Q Consensus 556 ~~~~~k~~A~~aL~nLs~~~~n~~~iv~a-G-~v~~Lv~lL-~-----~~~l~~~al~~L~nLa--~~e~~-~~i~~~~g 624 (744)
.....+..++++|+|+-.+...+..+.+. + .|...+..+ . +..++..++.++.|+| ....+ ..-.. ..
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~-~~ 200 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQ-SE 200 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHH-HH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHH-HH
Confidence 56678889999999999998888888654 3 333333333 2 2356777888888998 22222 10011 12
Q ss_pred cHHHHHHHHc-C-CCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHh-hcCCHHHHHHHHHH
Q 004582 625 CIDSIAKLLE-T-GTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDIS-VNGNSRGKETAKEL 689 (744)
Q Consensus 625 ~V~~Lv~lL~-~-~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll-~~~s~~~r~~A~~l 689 (744)
.+..+++.+. . .+++..-.++.+|.+|+..+..........|+-..+-... ....+++++.+..+
T Consensus 201 ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 201 LLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 4566666433 2 6899999999999999988777666666566665555554 45578888887654
No 261
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.26 E-value=1.1e+02 Score=39.66 Aligned_cols=230 Identities=12% Similarity=0.177 Sum_probs=112.1
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcchh--hHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCc
Q 004582 423 TSLSKLASRPWGSQCDAVENIKKLLKDNGQS--RHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEM 500 (744)
Q Consensus 423 ~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~--r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~ 500 (744)
+++..|.+..|.+|..++-+|..|....+.. ...+- ..+..+.+...+ ....++++|-.+...+++
T Consensus 1043 eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvmDD----IKEsVR~aa~~~~~~lsK------ 1110 (1702)
T KOG0915|consen 1043 ELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVMDD----IKESVREAADKAARALSK------ 1110 (1702)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH------
Confidence 4666677778999999999999998653322 22222 345555565544 344555555444333322
Q ss_pred ccccccchHHHHHhhcchhHHHHHHHHHHhccChhhhHHHHhcCCchhhhc--ccccCCHHHHHHHHHHHHHhcCCcchH
Q 004582 501 PLFHKDEICTFALFLDSEIMEEALEIIEVLSHQQNYASELVASGIIPSIIK--FLDTGTRESRELAIKILCNLSSGDNIV 578 (744)
Q Consensus 501 ~iv~~Gai~~Lv~lL~s~~~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~--lL~s~~~~~k~~A~~aL~nLs~~~~n~ 578 (744)
..|.+.+. .+..+..-+-..++|.|+. ++ +.-.++|..++++|..|+....-.
T Consensus 1111 ---------l~vr~~d~---------------~~~~~~~~~l~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~ 1165 (1702)
T KOG0915|consen 1111 ---------LCVRICDV---------------TNGAKGKEALDIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKE 1165 (1702)
T ss_pred ---------HHhhhccc---------------CCcccHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhh
Confidence 00000000 0001111111334555543 44 556789999999999998765421
Q ss_pred HHHHhcCCcHhHHHHhcC--ccH-----------HHHHHHHHHH-hc--CH--HH--------HHHHHhhCCcHHHHHHH
Q 004582 579 YHILYLDCTSKLVRLLED--PIL-----------SSYCIKIIKA-LC--TS--EA--------RAAVAESNPCIDSIAKL 632 (744)
Q Consensus 579 ~~iv~aG~v~~Lv~lL~~--~~l-----------~~~al~~L~n-La--~~--e~--------~~~i~~~~g~V~~Lv~l 632 (744)
..-.-...||.|++.... +.+ ..+|+..++. .+ .| +. -..+.+ ..+|.+.++
T Consensus 1166 lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLe--elip~l~el 1243 (1702)
T KOG0915|consen 1166 LKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLE--ELIPRLTEL 1243 (1702)
T ss_pred hcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHH--HHHHHHHHH
Confidence 111223556666666533 221 2233333332 11 11 00 112222 456777777
Q ss_pred HcCC-CHHHHHHHHHHHHHHhcC-CHHHHHHHHhCC-cHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 004582 633 LETG-TREEQEHIVDVLLSLCHE-HTKYCQLANTES-IIQCVVDISVNGNSRGKETAKELIMLLD 694 (744)
Q Consensus 633 L~~~-s~~~~e~A~~~L~~Lc~~-~~~~~~~v~~~G-~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~ 694 (744)
++.+ .-..|--++.++..|... +.+. -=-.| .+..++....+-++.+++.-+.+.-.|-
T Consensus 1244 ~R~sVgl~Tkvg~A~fI~~L~~r~~~em---tP~sgKll~al~~g~~dRNesv~kafAsAmG~L~ 1305 (1702)
T KOG0915|consen 1244 VRGSVGLGTKVGCASFISLLVQRLGSEM---TPYSGKLLRALFPGAKDRNESVRKAFASAMGYLA 1305 (1702)
T ss_pred HhccCCCCcchhHHHHHHHHHHHhcccc---CcchhHHHHHHhhccccccHHHHHHHHHHHHHHH
Confidence 7653 122233333333333311 1000 00112 4667777777888888876555554444
No 262
>PLN02189 cellulose synthase
Probab=60.14 E-value=6.4 Score=48.57 Aligned_cols=46 Identities=22% Similarity=0.241 Sum_probs=37.7
Q ss_pred cccccccc-----cCCCceec--CCCccccHHHHHHHHccCCCCCCCCCCCCC
Q 004582 265 FKCSISLR-----LMYDPVVI--ASGKTFERVWIQKWFNAGHTTCPKTHMRLD 310 (744)
Q Consensus 265 f~CPI~~~-----~m~dPV~~--~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~ 310 (744)
-.|+||++ .+-+|.+. .||.-.||.|.+-=-++|+..||.|+.++.
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 37999976 45677765 588889999997667789999999998876
No 263
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=59.87 E-value=43 Score=40.73 Aligned_cols=150 Identities=15% Similarity=0.158 Sum_probs=105.8
Q ss_pred cCCchhhhcccccCCHHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHh----cCccHHHHHHHHHHHhc-CHHHHH
Q 004582 543 SGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLL----EDPILSSYCIKIIKALC-TSEARA 617 (744)
Q Consensus 543 ~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL----~~~~l~~~al~~L~nLa-~~e~~~ 617 (744)
.+.+..|.++....+.++...-+.+|+..+..+.......++-+.|..+.+. .||-+...+-.++..|+ ...+..
T Consensus 529 p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g 608 (1005)
T KOG2274|consen 529 PMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYG 608 (1005)
T ss_pred hHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhc
Confidence 4556667777766777888888999999998888777888888888888876 45767777888888888 666666
Q ss_pred HHHhhCCcHHHHHHHHcCCC----HHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhh-cCCHHHHHHHHHHHHH
Q 004582 618 AVAESNPCIDSIAKLLETGT----REEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISV-NGNSRGKETAKELIML 692 (744)
Q Consensus 618 ~i~~~~g~V~~Lv~lL~~~s----~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~-~~s~~~r~~A~~lL~~ 692 (744)
.+.+ -+||.|+.+|.... +....-|+.+|..+-++.+.-..-..-.-+.|++.+..- +++...-..|...|+.
T Consensus 609 ~m~e--~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra 686 (1005)
T KOG2274|consen 609 PMQE--RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRA 686 (1005)
T ss_pred chHH--HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHH
Confidence 6665 57999999997543 556667777777665553321122222336777777654 4455566788888876
Q ss_pred hh
Q 004582 693 LD 694 (744)
Q Consensus 693 L~ 694 (744)
+-
T Consensus 687 ~I 688 (1005)
T KOG2274|consen 687 LI 688 (1005)
T ss_pred HH
Confidence 64
No 264
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=59.73 E-value=5.8 Score=47.75 Aligned_cols=47 Identities=19% Similarity=0.511 Sum_probs=34.2
Q ss_pred CccccccccccCC--Ccee-----cCCCccccHHHHHHHHcc-CCCCCCCCCCCC
Q 004582 263 EEFKCSISLRLMY--DPVV-----IASGKTFERVWIQKWFNA-GHTTCPKTHMRL 309 (744)
Q Consensus 263 ~~f~CPI~~~~m~--dPV~-----~~~G~ty~r~~I~~w~~~-~~~~cP~t~~~l 309 (744)
..=.|+||--+.. |--. -.|.|.|--+|+.+||+. |+.+||.|+..+
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence 3346999976653 3211 146789999999999985 678999998654
No 265
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=59.66 E-value=55 Score=40.09 Aligned_cols=181 Identities=13% Similarity=0.159 Sum_probs=105.8
Q ss_pred cHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCc
Q 004582 421 DLTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEM 500 (744)
Q Consensus 421 ~~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~ 500 (744)
.+.+...+.+.+|..|.+|++.+....+... -.......|.+..+++....+ .+..+...|+..|-.++..-+...
T Consensus 255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kD---aN~~v~~~aa~~l~~ia~~lr~~~ 330 (815)
T KOG1820|consen 255 TKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKD---ANINVVMLAAQILELIAKKLRPLF 330 (815)
T ss_pred ChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccC---cchhHHHHHHHHHHHHHHhcchhh
Confidence 4457777888999999999999998887533 111112234444444444332 567777788888887776444333
Q ss_pred ccccccchHHHHHhhcc---hhHHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCC-c-
Q 004582 501 PLFHKDEICTFALFLDS---EIMEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSG-D- 575 (744)
Q Consensus 501 ~iv~~Gai~~Lv~lL~s---~~~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~-~- 575 (744)
.-...++++.|+.-+.. ...+.+..++-.... .-.-...++.+..+++++++..+..+...+-..... +
T Consensus 331 ~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 331 RKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred HHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 22334566667666642 234444444422211 111234567788899999999888876666544332 2
Q ss_pred chHHHHHhcCCcHhHHHHhcC--ccHHHHHHHHHHHhc
Q 004582 576 NIVYHILYLDCTSKLVRLLED--PILSSYCIKIIKALC 611 (744)
Q Consensus 576 ~n~~~iv~aG~v~~Lv~lL~~--~~l~~~al~~L~nLa 611 (744)
.+...-.-.+.+|.++....| .+++..|..++..+-
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 111221223666777776655 467777776666554
No 266
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=59.42 E-value=40 Score=42.30 Aligned_cols=223 Identities=15% Similarity=0.108 Sum_probs=125.1
Q ss_pred CCcHHHHHhhcCCCHHHHHHHHHHHHHHhh---hcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhc-
Q 004582 419 GTDLTSLSKLASRPWGSQCDAVENIKKLLK---DNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILS- 494 (744)
Q Consensus 419 ~~~~~ll~~L~s~~~e~q~~Al~~Lr~Lak---~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~- 494 (744)
+..|-++..+.+...++|..|+.+|..+.. +=+..-..|.-.=.+|.|-.++.+. ....++.+=+..|..|+.
T Consensus 462 RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~---~~~~vRiayAsnla~LA~t 538 (1431)
T KOG1240|consen 462 RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDS---SAQIVRIAYASNLAQLAKT 538 (1431)
T ss_pred hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccC---ccceehhhHHhhHHHHHHH
Confidence 345667788888899999999999987762 2222223344445677777777652 112222222222222211
Q ss_pred -----------------CCCCCccccc------ccch----HHH-HHhhc-ch-hHHHH-HHHHHHhccChhhhHHHHhc
Q 004582 495 -----------------QSRDEMPLFH------KDEI----CTF-ALFLD-SE-IMEEA-LEIIEVLSHQQNYASELVAS 543 (744)
Q Consensus 495 -----------------~~~nk~~iv~------~Gai----~~L-v~lL~-s~-~~e~A-~~~L~~Ls~~~~~k~~I~~~ 543 (744)
++.|-....+ .+++ ... +.+|. +. ....| +..+.-|+ .-++..
T Consensus 539 A~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC------~FFGk~ 612 (1431)
T KOG1240|consen 539 AYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLC------VFFGKE 612 (1431)
T ss_pred HHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH------HHhhhc
Confidence 2222211111 1111 111 12221 11 11111 11122222 223322
Q ss_pred ----CCchhhhcccccCCHHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcCc--cHHHHHHHHHHHhc-CHHHH
Q 004582 544 ----GIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLEDP--ILSSYCIKIIKALC-TSEAR 616 (744)
Q Consensus 544 ----G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~--~l~~~al~~L~nLa-~~e~~ 616 (744)
=.++.|+..|...+...|-+-...|..+|..-. .+-++.+.+|.|..-|.|+ .+...|+.+|.-|+ ..--+
T Consensus 613 ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG--~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~ 690 (1431)
T KOG1240|consen 613 KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG--WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLR 690 (1431)
T ss_pred ccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe--eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccc
Confidence 256777888888877777766666666655433 3335778899999999874 57889999999888 44333
Q ss_pred HHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Q 004582 617 AAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHE 654 (744)
Q Consensus 617 ~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~ 654 (744)
...+. ..+....-+|-+.+.-+|..++.++..+...
T Consensus 691 K~~v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 691 KPAVK--DILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred hHHHH--HHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 32222 2355566677788899999999999988744
No 267
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=59.34 E-value=45 Score=31.18 Aligned_cols=72 Identities=21% Similarity=0.231 Sum_probs=57.1
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH-HHHHHHhCCcHHHHHHHhhc---CCHHHHHHHHHHHHHhhh
Q 004582 624 PCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTK-YCQLANTESIIQCVVDISVN---GNSRGKETAKELIMLLDH 695 (744)
Q Consensus 624 g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~-~~~~v~~~G~i~~Lv~Ll~~---~s~~~r~~A~~lL~~L~~ 695 (744)
.++..|-+-|.+++|.++-.|+.+|-.+..+.+. ....+.....+..|+.++.+ ..+.++.++..++.....
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3566777778889999999999999998877655 55566665677779999875 467899999999987764
No 268
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.16 E-value=7.6 Score=41.63 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=41.6
Q ss_pred ceecCCCccccHHHHHHHHccCCCCCCCCCCCC--C---CCCCcccHHHHHHHHHH
Q 004582 277 PVVIASGKTFERVWIQKWFNAGHTTCPKTHMRL--D---NVSVTPNVAIKELISQW 327 (744)
Q Consensus 277 PV~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l--~---~~~l~pn~~l~~~i~~~ 327 (744)
|-++.||||+|-.|+.+-+..+...||.|+.+. . ...|..|+++-..|+..
T Consensus 22 p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 22 PRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 445559999999999998888888899999883 2 34688888888888776
No 269
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=59.10 E-value=3.8 Score=48.19 Aligned_cols=64 Identities=17% Similarity=0.415 Sum_probs=47.9
Q ss_pred CccccccccccCCCceecCCCccccHHHHHHHHc--cCCCCCCCCCCCCCCCCCcccHHHHHHHHH
Q 004582 263 EEFKCSISLRLMYDPVVIASGKTFERVWIQKWFN--AGHTTCPKTHMRLDNVSVTPNVAIKELISQ 326 (744)
Q Consensus 263 ~~f~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~--~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~ 326 (744)
.+..||||.+...+|+.+.|-|.||+.|+..-|. .+...||+|+..+....+..-..-.+++++
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe 85 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKE 85 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHH
Confidence 3567999999999999999999999999998654 456789999865554444444444555553
No 270
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=58.55 E-value=70 Score=37.76 Aligned_cols=163 Identities=15% Similarity=0.106 Sum_probs=94.8
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHh---hCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCc
Q 004582 424 SLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAF---LNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEM 500 (744)
Q Consensus 424 ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~---~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~ 500 (744)
.+..+..-+++.+--|+..||.++++...+-..+- ...++..++..+. .++.-+..++++|.|+..+..++.
T Consensus 549 ~l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-----~~~an~ll~vR~L~N~f~~~~g~~ 623 (745)
T KOG0301|consen 549 ALAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-----ADPANQLLVVRCLANLFSNPAGRE 623 (745)
T ss_pred HHHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-----cchhHHHHHHHHHHHhccCHHHHH
Confidence 44555556788889999999999987665544333 2345666666654 367888999999999999876665
Q ss_pred ccccc--cchHHHHHh--hcchhHHHHHHHH-HHhccC--hhhhHHHHhcCCchhhhccccc-----CCHHHHHHHHHHH
Q 004582 501 PLFHK--DEICTFALF--LDSEIMEEALEII-EVLSHQ--QNYASELVASGIIPSIIKFLDT-----GTRESRELAIKIL 568 (744)
Q Consensus 501 ~iv~~--Gai~~Lv~l--L~s~~~e~A~~~L-~~Ls~~--~~~k~~I~~~G~Ip~Lv~lL~s-----~~~~~k~~A~~aL 568 (744)
.+... -.+.++++. +++.+...|.+++ .|++.. ..+- +.|+.+.|...+.. .+.++.-.++.||
T Consensus 624 ~~~s~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~Al 699 (745)
T KOG0301|consen 624 LFMSRLESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVAL 699 (745)
T ss_pred HHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHH
Confidence 54432 111111111 1111223344444 333321 1111 13444444443332 2235666678888
Q ss_pred HHhcCCcchHHHHHhcCCcHhHHHHhc
Q 004582 569 CNLSSGDNIVYHILYLDCTSKLVRLLE 595 (744)
Q Consensus 569 ~nLs~~~~n~~~iv~aG~v~~Lv~lL~ 595 (744)
.+|...+.+..++.+.=-|..++.-+.
T Consensus 700 gtL~t~~~~~~~~A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 700 GTLMTVDASVIQLAKNRSVDSIAKKLK 726 (745)
T ss_pred HhhccccHHHHHHHHhcCHHHHHHHHH
Confidence 888888888777776666666666653
No 271
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=58.14 E-value=12 Score=33.73 Aligned_cols=52 Identities=17% Similarity=0.423 Sum_probs=31.0
Q ss_pred CCCCC-ccccccccccCCCceecCC--C----ccccHHHHHHHHccCCCCCCCCCCCCCC
Q 004582 259 LEPPE-EFKCSISLRLMYDPVVIAS--G----KTFERVWIQKWFNAGHTTCPKTHMRLDN 311 (744)
Q Consensus 259 ~~~p~-~f~CPI~~~~m~dPV~~~~--G----~ty~r~~I~~w~~~~~~~cP~t~~~l~~ 311 (744)
+.-|+ .+.|||++++-..=|.+.. | .-||..++.+-...|. .=|.+++|+..
T Consensus 34 f~C~ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~~-~HPLSREpit~ 92 (113)
T PF06416_consen 34 FQCPEEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREGA-PHPLSREPITP 92 (113)
T ss_dssp CTS-CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT----TTT-----T
T ss_pred ccCCHHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcCC-CCCCccCCCCh
Confidence 33454 4899999999999999832 2 3699999999988754 33788877754
No 272
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=56.92 E-value=39 Score=35.42 Aligned_cols=180 Identities=16% Similarity=0.076 Sum_probs=90.5
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhh-CC-ChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcccc
Q 004582 426 SKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFL-NS-YVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPLF 503 (744)
Q Consensus 426 ~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~-~G-~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~iv 503 (744)
..+..-+.+.+-=++..+|.++-+...+. .... .+ ....+..++........+..+..++++
T Consensus 70 ~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~--------------- 133 (268)
T PF08324_consen 70 KILLSWPPESRFPALDLLRLAALHPPASD-LLASEDSGIADLLSTLISSGSSSSPPANQMLALRL--------------- 133 (268)
T ss_dssp HHHCCS-CCC-HHHHHHHHHHCCCHCHHH-HHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHH---------------
T ss_pred HHHHhCCCccchhHHhHHHHHHhCccHHH-HHhccccchHHHHHHHHHhccCCCcHHHHHHHHHH---------------
Confidence 44444444556667777777776533322 3322 22 244445555442222334444444444
Q ss_pred cccchHHHHHhhcchhHHHHHHHHHHhccChhhhHHHHhc-C-CchhhhcccccC----CHHHHHHHHHHHHHhcCCcch
Q 004582 504 HKDEICTFALFLDSEIMEEALEIIEVLSHQQNYASELVAS-G-IIPSIIKFLDTG----TRESRELAIKILCNLSSGDNI 577 (744)
Q Consensus 504 ~~Gai~~Lv~lL~s~~~e~A~~~L~~Ls~~~~~k~~I~~~-G-~Ip~Lv~lL~s~----~~~~k~~A~~aL~nLs~~~~n 577 (744)
+.|+-.+..++..+.+. + .+...+.-+... +..++..+++.++|+|..--.
T Consensus 134 -----------------------l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~ 190 (268)
T PF08324_consen 134 -----------------------LANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHK 190 (268)
T ss_dssp -----------------------HHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHh
Confidence 44554444454444432 1 233333333332 567888888899998753211
Q ss_pred HH--HHHhcCCcHhHHHHh----cCccHHHHHHHHHHHhc-CHHHHHHHHhhCCcHHHHHHHH-cCCCHHHHHHH
Q 004582 578 VY--HILYLDCTSKLVRLL----EDPILSSYCIKIIKALC-TSEARAAVAESNPCIDSIAKLL-ETGTREEQEHI 644 (744)
Q Consensus 578 ~~--~iv~aG~v~~Lv~lL----~~~~l~~~al~~L~nLa-~~e~~~~i~~~~g~V~~Lv~lL-~~~s~~~~e~A 644 (744)
.. .-.+...+..+++.+ .+++..-.++.+|++|. .+.........-|+-..+-..- ....+++++.+
T Consensus 191 ~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~ 265 (268)
T PF08324_consen 191 NRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVA 265 (268)
T ss_dssp CTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHh
Confidence 11 001112344555533 45678889999999999 6666666655334333333332 23456666554
No 273
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=56.63 E-value=9.2 Score=30.03 Aligned_cols=28 Identities=21% Similarity=0.447 Sum_probs=24.4
Q ss_pred cccccccccC--CCceec--CCCccccHHHHH
Q 004582 265 FKCSISLRLM--YDPVVI--ASGKTFERVWIQ 292 (744)
Q Consensus 265 f~CPI~~~~m--~dPV~~--~~G~ty~r~~I~ 292 (744)
-.||+|++-+ .|.+++ .||-.|=|.|.+
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 4699999999 889887 799999999943
No 274
>PRK10869 recombination and repair protein; Provisional
Probab=56.51 E-value=4e+02 Score=31.44 Aligned_cols=145 Identities=10% Similarity=0.040 Sum_probs=70.3
Q ss_pred HHHHHhhhhhHHhhCC--CCCcchhhhhhHHHHHHHHHHHHHHhhccCeeeehhhh---hHHHHHHHHHHHHHHHHHHhh
Q 004582 31 INKISHIHSDIESARP--GCTSGIHVLCSFHVAVDKSKLLIQYCSESSKLYLAITA---DRIQMKFERVRNTLELCLSQI 105 (744)
Q Consensus 31 ~~ri~~l~~~lee~r~--~~~~~~~~l~~L~~~l~~ak~Ll~~c~~~Sklyl~~~~---~~i~~~~~~~~~~l~~~L~~i 105 (744)
.+++..+--.++|+.. ..+.-...|..-+.-|..+..+.+.+...- -++.. ..+...+..+.+.++..-.--
T Consensus 184 ~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~n~e~i~~~~~~~~---~~L~~~~~~~~~~~l~~~~~~l~~~~~~d 260 (553)
T PRK10869 184 AARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLANSGQLLTTSQNAL---QLLADGEEVNILSQLYSAKQLLSELIGMD 260 (553)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCCcccHHHHHHHHHHHHHHHhhhC
Confidence 3444445444555542 123345556666666666666666655431 11222 134444444444444321111
Q ss_pred hhhc-----hHhHHHHHHHHHHHHhhccccCCcchhHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHhccCCCCHHHHH
Q 004582 106 QNIV-----PSLLAAKVSDIIHDIRNAKFPLEPSEDEAGKVLLALLHRGISASSFINQLELEALQLAALRLNITSPLALL 180 (744)
Q Consensus 106 ~~~~-----~~~l~~~v~~~~~~l~~~~~~~d~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~l~l~~~~~~~ 180 (744)
|.+- -.++..+++++..+++.....++.+.+++ +.|. +.+..|.++.+|-| .+..++.
T Consensus 261 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l-~~ie---------------~Rl~~l~~L~rKyg-~~~~~~~ 323 (553)
T PRK10869 261 SKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRL-AELE---------------QRLSKQISLARKHH-VSPEELP 323 (553)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHH-HHHH---------------HHHHHHHHHHHHhC-CCHHHHH
Confidence 1000 01233355666666654433333333332 2222 13446677788888 4677777
Q ss_pred HHHHHHHHHHHHhcc
Q 004582 181 IEKRSIKRLLQKICD 195 (744)
Q Consensus 181 ~E~~~l~~~~~~~~~ 195 (744)
.-...+++.++....
T Consensus 324 ~~~~~l~~eL~~L~~ 338 (553)
T PRK10869 324 QHHQQLLEEQQQLDD 338 (553)
T ss_pred HHHHHHHHHHHHhhC
Confidence 777777766666553
No 275
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.46 E-value=4.4e+02 Score=31.99 Aligned_cols=88 Identities=15% Similarity=0.197 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhcCC-cchHHHHHhcCCcHhHHHHhcCcc--HHHHHHHHHHHhc--CHHHHHHHHhhCCcHHHHHHHH
Q 004582 559 ESRELAIKILCNLSSG-DNIVYHILYLDCTSKLVRLLEDPI--LSSYCIKIIKALC--TSEARAAVAESNPCIDSIAKLL 633 (744)
Q Consensus 559 ~~k~~A~~aL~nLs~~-~~n~~~iv~aG~v~~Lv~lL~~~~--l~~~al~~L~nLa--~~e~~~~i~~~~g~V~~Lv~lL 633 (744)
..|..-+.+|+..+.. ++ +.+.+|+.|++++.|.+ .....+..++..- .|.-|..|++ .|++-+
T Consensus 374 ~yRqlLiktih~cav~Fp~-----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~------~l~~~~ 442 (948)
T KOG1058|consen 374 KYRQLLIKTIHACAVKFPE-----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASIIE------KLLETF 442 (948)
T ss_pred HHHHHHHHHHHHHhhcChH-----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHH------HHHHhh
Confidence 4567777788777654 33 34567899999997643 3333344444433 4555655554 333333
Q ss_pred cC-CCHHHHHHHHHHHHHHhcCCHH
Q 004582 634 ET-GTREEQEHIVDVLLSLCHEHTK 657 (744)
Q Consensus 634 ~~-~s~~~~e~A~~~L~~Lc~~~~~ 657 (744)
.. .+.++-+.|+|++..-|....+
T Consensus 443 ~~irS~ki~rgalwi~GeYce~~~~ 467 (948)
T KOG1058|consen 443 PQIRSSKICRGALWILGEYCEGLSE 467 (948)
T ss_pred hhhcccccchhHHHHHHHHHhhhHH
Confidence 22 5667888999999998877653
No 276
>PLN02195 cellulose synthase A
Probab=55.84 E-value=9.1 Score=46.99 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=37.8
Q ss_pred ccccccc-----cCCCceec--CCCccccHHHHHHHHccCCCCCCCCCCCCCC
Q 004582 266 KCSISLR-----LMYDPVVI--ASGKTFERVWIQKWFNAGHTTCPKTHMRLDN 311 (744)
Q Consensus 266 ~CPI~~~-----~m~dPV~~--~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~ 311 (744)
.|.||++ .+-+|.+. .||.-.||.|.+-=-++|+..||.|+.++..
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDA 60 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCcccc
Confidence 4888876 66788776 7899999999965566899999999999873
No 277
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=55.79 E-value=53 Score=41.14 Aligned_cols=135 Identities=15% Similarity=0.127 Sum_probs=100.1
Q ss_pred Cchhhhccccc----CCHHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhc---CccHHHHHHHHHHHhc-CHHHH
Q 004582 545 IIPSIIKFLDT----GTRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLE---DPILSSYCIKIIKALC-TSEAR 616 (744)
Q Consensus 545 ~Ip~Lv~lL~s----~~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~---~~~l~~~al~~L~nLa-~~e~~ 616 (744)
..|.++++.++ ++++++.+|.-||+.+..-..+ .-+-.+|.|+..|. ++.++.+++..|+-|+ .-.+-
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~----fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnl 995 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE----FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL 995 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccc
Confidence 56777777744 5788999999999887644321 11245678888884 3567888898999888 32222
Q ss_pred HHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 004582 617 AAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLL 693 (744)
Q Consensus 617 ~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L 693 (744)
++ -.-+.|...|...++.+|+.|+-+|..|-.+ ..+.--|.++-+...+.+++++++..|..-.+-|
T Consensus 996 ---ie--~~T~~Ly~rL~D~~~~vRkta~lvlshLILn-----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 996 ---IE--PWTEHLYRRLRDESPSVRKTALLVLSHLILN-----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred ---cc--hhhHHHHHHhcCccHHHHHHHHHHHHHHHHh-----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 22 3346778888999999999999999999755 4566779999999999999999999999443333
No 278
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=54.69 E-value=45 Score=41.28 Aligned_cols=147 Identities=12% Similarity=0.014 Sum_probs=93.7
Q ss_pred cCCchhhhcccccCCHHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHh---cCccHHHHHHHHHHHhc-CHHHHHH
Q 004582 543 SGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLL---EDPILSSYCIKIIKALC-TSEARAA 618 (744)
Q Consensus 543 ~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL---~~~~l~~~al~~L~nLa-~~e~~~~ 618 (744)
.+++..|+..|++.+..++..|++-+..+..... ..++ -.+|...++++ .++..-..++-+|+.|| -.--...
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 4678899999999999999999999999988765 2222 24455555544 33445567888899998 3211111
Q ss_pred HHhhCCcHHHHHHHHc--------CCCHHHHHHHHHHHHHHhcCCHHH-HHHHHhCCcHHHHHHHhhcCCHHHHHHHHHH
Q 004582 619 VAESNPCIDSIAKLLE--------TGTREEQEHIVDVLLSLCHEHTKY-CQLANTESIIQCVVDISVNGNSRGKETAKEL 689 (744)
Q Consensus 619 i~~~~g~V~~Lv~lL~--------~~s~~~~e~A~~~L~~Lc~~~~~~-~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~l 689 (744)
..+ .++|.++.-|. .....+|+.|+.+.|++++..... ..-+.+.=+--.|..-+.+..-..|+.|..+
T Consensus 417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAA 494 (1133)
T KOG1943|consen 417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAA 494 (1133)
T ss_pred HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHH
Confidence 122 34566665553 134578999999999998664321 1222222222233344557778899999888
Q ss_pred HHHhh
Q 004582 690 IMLLD 694 (744)
Q Consensus 690 L~~L~ 694 (744)
|+-.-
T Consensus 495 lqE~V 499 (1133)
T KOG1943|consen 495 LQENV 499 (1133)
T ss_pred HHHHh
Confidence 86554
No 279
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.52 E-value=1.2e+02 Score=36.43 Aligned_cols=205 Identities=14% Similarity=0.125 Sum_probs=117.9
Q ss_pred CCcHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCC
Q 004582 419 GTDLTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRD 498 (744)
Q Consensus 419 ~~~~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~n 498 (744)
+.+|.+.+.|.....-+|++|+-++..+-+... .+. .++=+.+-.+|... .|+...++|...|...-.
T Consensus 134 pl~p~IracleHrhsYVRrNAilaifsIyk~~~----~L~-pDapeLi~~fL~~e---~DpsCkRNAFi~L~~~D~---- 201 (948)
T KOG1058|consen 134 PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE----HLI-PDAPELIESFLLTE---QDPSCKRNAFLMLFTTDP---- 201 (948)
T ss_pred hhHHHHHHHHhCcchhhhhhhheeehhHHhhhh----hhc-CChHHHHHHHHHhc---cCchhHHHHHHHHHhcCH----
Confidence 345667777888889999999998888866422 222 23334444666653 689999999887765521
Q ss_pred CcccccccchHHHHHhhcc-h-----hHHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhc
Q 004582 499 EMPLFHKDEICTFALFLDS-E-----IMEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLS 572 (744)
Q Consensus 499 k~~iv~~Gai~~Lv~lL~s-~-----~~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs 572 (744)
+.++.-|....+. + .+-..+..+..-+..... .....|..+..+|.+.+..++-.|+++|.+||
T Consensus 202 ------ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~----~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS 271 (948)
T KOG1058|consen 202 ------ERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPA----EKARYIRCIYNLLSSTSSAVIFEAAGTLVTLS 271 (948)
T ss_pred ------HHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHH----HhhHHHHHHHHHHhcCCchhhhhhcceEEEcc
Confidence 1122222222111 0 000111111111111111 12335677888888888888888888888888
Q ss_pred CCcchHHHHHhcCCcHhHHHHh---cCccHHHHHHHHHHHhcCHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHH
Q 004582 573 SGDNIVYHILYLDCTSKLVRLL---EDPILSSYCIKIIKALCTSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLL 649 (744)
Q Consensus 573 ~~~~n~~~iv~aG~v~~Lv~lL---~~~~l~~~al~~L~nLa~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~ 649 (744)
.++..-... ...+++++ .|.+++--.+--|..+ ..+...|.+ |.+-.++.+|+..+-+++..++.+.+
T Consensus 272 ~~p~alk~A-----a~~~i~l~~kesdnnvklIvldrl~~l--~~~~~~il~--~l~mDvLrvLss~dldvr~Ktldi~l 342 (948)
T KOG1058|consen 272 NDPTALKAA-----ASTYIDLLVKESDNNVKLIVLDRLSEL--KALHEKILQ--GLIMDVLRVLSSPDLDVRSKTLDIAL 342 (948)
T ss_pred CCHHHHHHH-----HHHHHHHHHhccCcchhhhhHHHHHHH--hhhhHHHHH--HHHHHHHHHcCcccccHHHHHHHHHH
Confidence 876533332 23444554 2233332222222222 233444555 67778888999999999999999988
Q ss_pred HHhcC
Q 004582 650 SLCHE 654 (744)
Q Consensus 650 ~Lc~~ 654 (744)
-|.+.
T Consensus 343 dLvss 347 (948)
T KOG1058|consen 343 DLVSS 347 (948)
T ss_pred hhhhh
Confidence 88744
No 280
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=54.47 E-value=57 Score=31.06 Aligned_cols=72 Identities=15% Similarity=0.112 Sum_probs=58.6
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHhCCcHHHHHHHhh-cCCHHHHHHHHHHHHHhhh
Q 004582 624 PCIDSIAKLLETGTREEQEHIVDVLLSLCHE-HTKYCQLANTESIIQCVVDISV-NGNSRGKETAKELIMLLDH 695 (744)
Q Consensus 624 g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~-~~~~~~~v~~~G~i~~Lv~Ll~-~~s~~~r~~A~~lL~~L~~ 695 (744)
.++..|.+-|.++++.++-.|+.+|-.+..+ +......+...+.+..|+.++. ...+++++++..++..-..
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 4567777788889999999999999888876 4456677778889999999987 4567899999999987764
No 281
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=54.28 E-value=13 Score=34.73 Aligned_cols=51 Identities=12% Similarity=0.297 Sum_probs=41.8
Q ss_pred CCccccccccccCCCceec----CCCccccHHHHHHHHc--cCCCCCCCCCCCCCCC
Q 004582 262 PEEFKCSISLRLMYDPVVI----ASGKTFERVWIQKWFN--AGHTTCPKTHMRLDNV 312 (744)
Q Consensus 262 p~~f~CPI~~~~m~dPV~~----~~G~ty~r~~I~~w~~--~~~~~cP~t~~~l~~~ 312 (744)
|.-+.|-||++.-.|+-.+ .||...|-.|--.-|. .-++.||.|+..+...
T Consensus 78 ~~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 78 PKLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CCceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 3567899999999999888 6999999999887554 3478999998877543
No 282
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=54.05 E-value=45 Score=31.75 Aligned_cols=70 Identities=13% Similarity=0.073 Sum_probs=58.6
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhc-chhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcC
Q 004582 423 TSLSKLASRPWGSQCDAVENIKKLLKDN-GQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQ 495 (744)
Q Consensus 423 ~ll~~L~s~~~e~q~~Al~~Lr~Lak~~-~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~ 495 (744)
.+-.+|.++++.+|..|+..|..+++.. ..-...+...+++..|++++.. ..++.++...+.++...+..
T Consensus 45 al~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~---~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 45 ALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT---TKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc---cCCHHHHHHHHHHHHHHHHH
Confidence 3557788999999999999999999874 4556678889999999999975 36889999999998888653
No 283
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=53.83 E-value=58 Score=31.08 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=59.8
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHhCCcHHHHHHHhhc-CCHHHHHHHHHHHHHhhhc
Q 004582 624 PCIDSIAKLLETGTREEQEHIVDVLLSLCHEHT-KYCQLANTESIIQCVVDISVN-GNSRGKETAKELIMLLDHC 696 (744)
Q Consensus 624 g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~-~~~~~v~~~G~i~~Lv~Ll~~-~s~~~r~~A~~lL~~L~~~ 696 (744)
.++..|..-|.++++.++-.|+.+|-.+..+.+ .....+.....+..|+.++.. ....++.++..+++.....
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 356677777888999999999999999886655 455677777899999999988 7889999999999877643
No 284
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=51.99 E-value=67 Score=40.30 Aligned_cols=179 Identities=16% Similarity=0.201 Sum_probs=112.7
Q ss_pred CChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcccccccchHHHHHhhc-chh---HHHHHHHHHHhccChhh
Q 004582 461 SYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPLFHKDEICTFALFLD-SEI---MEEALEIIEVLSHQQNY 536 (744)
Q Consensus 461 G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~iv~~Gai~~Lv~lL~-s~~---~e~A~~~L~~Ls~~~~~ 536 (744)
.+.|.++...++...-.||..|.+|.-+|..++.-+.. ...-.++.|+..+. ++. ..+++.++.-|+....|
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~----fces~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE----FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 36677777776655557899999999999998542111 12234666777765 322 35666666655543332
Q ss_pred hHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcCc--cHHHHHHHHHHHhcCHH
Q 004582 537 ASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLEDP--ILSSYCIKIIKALCTSE 614 (744)
Q Consensus 537 k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~--~l~~~al~~L~nLa~~e 614 (744)
-. .---+.|...|+..+..+|+.|+.+|.+|-.++ .|--.|.++-+...|.|+ .+.+-|=.....|++..
T Consensus 995 li----e~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 995 LI----EPWTEHLYRRLRDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred cc----chhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc
Confidence 11 012345667778899999999999999998753 333469999999999886 45555555666666211
Q ss_pred HHHHHHhhCCcHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCH
Q 004582 615 ARAAVAESNPCIDSIAKLLETGT--REEQEHIVDVLLSLCHEHT 656 (744)
Q Consensus 615 ~~~~i~~~~g~V~~Lv~lL~~~s--~~~~e~A~~~L~~Lc~~~~ 656 (744)
..|. ..+|-++.-|+++. .+--.....-|..+-..++
T Consensus 1067 --n~iy---nlLPdil~~Ls~~~l~~~~~~~vm~~li~~ikkde 1105 (1251)
T KOG0414|consen 1067 --NTIY---NLLPDILSRLSNGNLEEESYKTVMEFLIGLIKKDE 1105 (1251)
T ss_pred --cchh---hhchHHHHhhccCcccchhhHHHHHHHHHHhcccc
Confidence 2333 35788888887762 2223345555555555554
No 285
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=51.70 E-value=2.1e+02 Score=32.13 Aligned_cols=103 Identities=9% Similarity=0.083 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCC-HHHHHHHHHHHHHHhc-CCCCCcc-cccccchH
Q 004582 433 WGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCD-AKAQKDGAEVLLAILS-QSRDEMP-LFHKDEIC 509 (744)
Q Consensus 433 ~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d-~~~q~~A~~~L~nLs~-~~~nk~~-iv~~Gai~ 509 (744)
.++-.+|+..|+++.-.+...|....+......+.+.+....++.- ..++.-=+..|.-+.. ....|.+ +++.++++
T Consensus 111 ~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~ 190 (532)
T KOG4464|consen 111 MHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLE 190 (532)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccH
Confidence 4566778888888888888888877777777777766543221111 1222233333333322 2233333 45668888
Q ss_pred HHHHhhcch---------------h---HHHHHHHHHHhccChh
Q 004582 510 TFALFLDSE---------------I---MEEALEIIEVLSHQQN 535 (744)
Q Consensus 510 ~Lv~lL~s~---------------~---~e~A~~~L~~Ls~~~~ 535 (744)
.+-..|+.. . ..+|+.+++|++.+..
T Consensus 191 ~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~ 234 (532)
T KOG4464|consen 191 LLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSD 234 (532)
T ss_pred HHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccc
Confidence 887777421 0 1357778899887643
No 286
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=51.23 E-value=74 Score=37.77 Aligned_cols=250 Identities=14% Similarity=0.094 Sum_probs=143.2
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcccc
Q 004582 424 SLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPLF 503 (744)
Q Consensus 424 ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~iv 503 (744)
++..|.--+.+.+.+=...|..... .--..++..-.++.|+..+.- ++ +-...+..|+.+...-.... .
T Consensus 259 fLeel~lks~~eK~~Ff~~L~~~l~---~~pe~i~~~kvlp~Ll~~~~~----g~--a~~~~ltpl~k~~k~ld~~e--y 327 (690)
T KOG1243|consen 259 FLEELRLKSVEEKQKFFSGLIDRLD---NFPEEIIASKVLPILLAALEF----GD--AASDFLTPLFKLGKDLDEEE--Y 327 (690)
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHhhc----cc--cchhhhhHHHHhhhhccccc--c
Confidence 4444544566666655544444221 112234455566666666654 33 22333444444433222111 5
Q ss_pred cccchHHHHHhhcchhHHHHHHHHHHhccChhh-hHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCCcchHHHHH
Q 004582 504 HKDEICTFALFLDSEIMEEALEIIEVLSHQQNY-ASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIVYHIL 582 (744)
Q Consensus 504 ~~Gai~~Lv~lL~s~~~e~A~~~L~~Ls~~~~~-k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~iv 582 (744)
..+.++.|+.++.+....-=...|.++-..-+. -..+.+.-.+|.+..-+.+.+..+|+.++.++..|+.--.-+ .+
T Consensus 328 q~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~L 405 (690)
T KOG1243|consen 328 QVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NL 405 (690)
T ss_pred ccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hh
Confidence 668899999998776543223333333222222 345567788999999999999999999999988776432211 11
Q ss_pred hcCCcHhHHHHhc--CccHHHHHHHHHHHhc-C--HHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH
Q 004582 583 YLDCTSKLVRLLE--DPILSSYCIKIIKALC-T--SEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTK 657 (744)
Q Consensus 583 ~aG~v~~Lv~lL~--~~~l~~~al~~L~nLa-~--~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~ 657 (744)
....+..|-++-. ++.++.+..-+|..++ . +.-|..+. +.+...-+++.-+..|..++.+|+..+..-.
T Consensus 406 n~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL-----~~aftralkdpf~paR~a~v~~l~at~~~~~- 479 (690)
T KOG1243|consen 406 NGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVL-----ASAFTRALKDPFVPARKAGVLALAATQEYFD- 479 (690)
T ss_pred cHHHHHHHHhhCccccCcccccceeeecccccccchhhhcccc-----chhhhhhhcCCCCCchhhhhHHHhhcccccc-
Confidence 1122222323222 2467777777777777 3 33333222 2333445666666778888888777654432
Q ss_pred HHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 004582 658 YCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLD 694 (744)
Q Consensus 658 ~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~ 694 (744)
..-....++|.++-+..+.+..+|..|-.+++.+-
T Consensus 480 --~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 480 --QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred --hhhhhhhccccccccccCcccchhhHHHHHHHHHH
Confidence 22234557888888888888888888888876553
No 287
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=50.98 E-value=75 Score=36.62 Aligned_cols=111 Identities=15% Similarity=0.215 Sum_probs=73.2
Q ss_pred cCCcHhHHHHhcCccHHHHHHHHHHHhc-CH---HHHHHHHhhCCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCC---
Q 004582 584 LDCTSKLVRLLEDPILSSYCIKIIKALC-TS---EARAAVAESNPCIDSIAKLLE-TGTREEQEHIVDVLLSLCHEH--- 655 (744)
Q Consensus 584 aG~v~~Lv~lL~~~~l~~~al~~L~nLa-~~---e~~~~i~~~~g~V~~Lv~lL~-~~s~~~~e~A~~~L~~Lc~~~--- 655 (744)
.+.|+.+++.+..+.+.+--+.++. + .+ .+....+...+.|+.|+++|. ..++..+.+|..+|..|..-+
T Consensus 20 ~~~v~~llkHI~~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~ 97 (475)
T PF04499_consen 20 PNFVDNLLKHIDTPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNA 97 (475)
T ss_pred ccHHHHHHHhcCCcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 4788888888877777777666666 3 33 333344444799999999996 467889999998877774221
Q ss_pred ----------HHHHHHHHhCCcHHHHHHHhhc-CCHHHHHHHH-HHHHHhhhc
Q 004582 656 ----------TKYCQLANTESIIQCVVDISVN-GNSRGKETAK-ELIMLLDHC 696 (744)
Q Consensus 656 ----------~~~~~~v~~~G~i~~Lv~Ll~~-~s~~~r~~A~-~lL~~L~~~ 696 (744)
......+...-.+..|+..+-. ....+-..++ -++.++++.
T Consensus 98 ~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 98 PQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred ccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 2334455566678888887763 2233334444 456777655
No 288
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.88 E-value=15 Score=40.62 Aligned_cols=58 Identities=21% Similarity=0.516 Sum_probs=38.9
Q ss_pred CccccccccccCCC---ceecCCCccccHHHHHHHHc----cCCC---CCCCCCCCCCCCCCcccHHHHHHH
Q 004582 263 EEFKCSISLRLMYD---PVVIASGKTFERVWIQKWFN----AGHT---TCPKTHMRLDNVSVTPNVAIKELI 324 (744)
Q Consensus 263 ~~f~CPI~~~~m~d---PV~~~~G~ty~r~~I~~w~~----~~~~---~cP~t~~~l~~~~l~pn~~l~~~i 324 (744)
.-|.|.||.+-..- =+.++|+|.||++|...||. +|.. .||.++- .....|+ .+++++
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C---~~~a~~g-~vKelv 250 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC---GSVAPPG-QVKELV 250 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC---cccCCch-HHHHHH
Confidence 45789999776543 45679999999999999986 3433 3665432 2333444 677766
No 289
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=50.27 E-value=11 Score=41.36 Aligned_cols=36 Identities=22% Similarity=0.536 Sum_probs=26.6
Q ss_pred ceecCCCccccH-----HHHHHHHcc------------CCCCCCCCCCCCCCC
Q 004582 277 PVVIASGKTFER-----VWIQKWFNA------------GHTTCPKTHMRLDNV 312 (744)
Q Consensus 277 PV~~~~G~ty~r-----~~I~~w~~~------------~~~~cP~t~~~l~~~ 312 (744)
|..-+|++-||| +|+-+||.. |..+||.|+.+++-.
T Consensus 301 ~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 301 PNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL 353 (358)
T ss_pred ccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence 445577888866 699999963 346799999987643
No 290
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.37 E-value=33 Score=36.79 Aligned_cols=135 Identities=17% Similarity=0.266 Sum_probs=87.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcc
Q 004582 422 LTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMP 501 (744)
Q Consensus 422 ~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~ 501 (744)
...+..|.+.+|+..+.++..|+.|+...++....+.. -.|-.+++-+++ ....+-+.|+.++..+.+.-.+.+.
T Consensus 91 ~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKN----lRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 91 KQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKN----LRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcC----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778899999999999999999999876655544443 356777888877 5677889999999988776555543
Q ss_pred cccccchHHHHHhh-cch------hHHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHh
Q 004582 502 LFHKDEICTFALFL-DSE------IMEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNL 571 (744)
Q Consensus 502 iv~~Gai~~Lv~lL-~s~------~~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nL 571 (744)
- .+..++..| ... +.+.|..+|..+..+-. -.-+++.|+..+++.+..++..++....+.
T Consensus 166 ~----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vt------p~~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 166 Q----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVT------PQKLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred H----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccC------hHHHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 2 334444333 111 23556666644433211 122455666667777777777666554443
No 291
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.21 E-value=1.6e+02 Score=35.45 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=16.0
Q ss_pred CCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Q 004582 623 NPCIDSIAKLLETGTREEQEHIVDVLLSLC 652 (744)
Q Consensus 623 ~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc 652 (744)
.|.++.|-.++.+.+|.+..+|+++|..+.
T Consensus 159 ~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~ 188 (734)
T KOG1061|consen 159 SGLVDALKDLLSDSNPMVVANALAALSEIH 188 (734)
T ss_pred cchhHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 455555555555555555555555555543
No 292
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=49.19 E-value=5.4e+02 Score=31.91 Aligned_cols=148 Identities=14% Similarity=0.126 Sum_probs=88.5
Q ss_pred hCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcccccccchHHHHHhhc--ch---hHHHHHHHHHHhccC
Q 004582 459 LNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPLFHKDEICTFALFLD--SE---IMEEALEIIEVLSHQ 533 (744)
Q Consensus 459 ~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~iv~~Gai~~Lv~lL~--s~---~~e~A~~~L~~Ls~~ 533 (744)
..++++.|..+... .+.++...-..+|...++.+.......++-..|.++.+.- ++ +...+--++..|+..
T Consensus 528 ~p~ild~L~qlas~----~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~ 603 (1005)
T KOG2274|consen 528 QPMILDGLLQLASK----SSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI 603 (1005)
T ss_pred chHHHHHHHHHccc----ccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 36777777777765 4566666677778888887777777777778888887752 22 234555555656554
Q ss_pred hhhhHHHHhcCCchhhhcccccCC----HHHHHHHHHHHHHhcCCcch-HHHHHhcCCcHhHHHHh---cCccHHHHHHH
Q 004582 534 QNYASELVASGIIPSIIKFLDTGT----RESRELAIKILCNLSSGDNI-VYHILYLDCTSKLVRLL---EDPILSSYCIK 605 (744)
Q Consensus 534 ~~~k~~I~~~G~Ip~Lv~lL~s~~----~~~k~~A~~aL~nLs~~~~n-~~~iv~aG~v~~Lv~lL---~~~~l~~~al~ 605 (744)
..+...+ ..-.||.|+.+|.... .....-|+..|.-+..+.++ -....-.=++|++.+.. .|......+-.
T Consensus 604 ~~~~g~m-~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~E 682 (1005)
T KOG2274|consen 604 AANYGPM-QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATE 682 (1005)
T ss_pred HHhhcch-HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHH
Confidence 4443333 3457999999998765 34555566666545444321 22222234556666654 23345555555
Q ss_pred HHHHhc
Q 004582 606 IIKALC 611 (744)
Q Consensus 606 ~L~nLa 611 (744)
+|+.+-
T Consensus 683 cLra~I 688 (1005)
T KOG2274|consen 683 CLRALI 688 (1005)
T ss_pred HHHHHH
Confidence 555544
No 293
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=49.18 E-value=86 Score=29.78 Aligned_cols=72 Identities=10% Similarity=0.128 Sum_probs=58.0
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCcHHHHHHHhhc------CCHHHHHHHHHHHHHhhh
Q 004582 624 PCIDSIAKLLETGTREEQEHIVDVLLSLCHEH-TKYCQLANTESIIQCVVDISVN------GNSRGKETAKELIMLLDH 695 (744)
Q Consensus 624 g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~-~~~~~~v~~~G~i~~Lv~Ll~~------~s~~~r~~A~~lL~~L~~ 695 (744)
.++..|..-|.++++.++-.|+.+|-.+..+. ......+.....+..|+.++.. ....++.+...+++.-++
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 35677788888999999999999999988654 4566777778889999999963 467899999999977764
No 294
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=48.46 E-value=82 Score=29.45 Aligned_cols=72 Identities=19% Similarity=0.174 Sum_probs=57.9
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcch-hhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcC
Q 004582 423 TSLSKLASRPWGSQCDAVENIKKLLKDNGQ-SRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQ 495 (744)
Q Consensus 423 ~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~-~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~ 495 (744)
.+-.+|.++++.+|..|+..|..+.+.... -...+....++..|++++... ...+..++..++..+......
T Consensus 41 aL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~-~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 41 AIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNS-PKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHH
Confidence 355778899999999999999999987655 556677778888899999763 236889999999998888653
No 295
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=48.36 E-value=2.7e+02 Score=31.33 Aligned_cols=185 Identities=15% Similarity=0.110 Sum_probs=103.8
Q ss_pred ccccchHHHHHhhcchhHHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCC-HHHHHHHHHHHHHhcCCcchHHHH
Q 004582 503 FHKDEICTFALFLDSEIMEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGT-RESRELAIKILCNLSSGDNIVYHI 581 (744)
Q Consensus 503 v~~Gai~~Lv~lL~s~~~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~-~~~k~~A~~aL~nLs~~~~n~~~i 581 (744)
+++|--..+-++|++-+..+|+..-+.-+. .+++..+++ .++++|.+|- ...+..++.++.-||.+...-.-+
T Consensus 10 v~age~~~I~e~l~~~n~k~aa~~kFd~a~-~d~r~eL~e-----~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~ 83 (532)
T KOG4464|consen 10 VEAGEADKIEEFLRKYNFKHAAVFKFDSAN-SDDRKELGE-----RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPL 83 (532)
T ss_pred HhcCCchhHHHHHHHhhhhhhhhhcccccc-hhhHHHHHH-----HHHHHHhcCCCchhhhhHHHHHHHHhccccccccc
Confidence 344444555556665555565544443332 334666643 4666666665 345566677777777654422222
Q ss_pred HhcCCcHhHHHHh------------cCccHHHHHHHHHHHhc--CHHHHHHHHhhCCcHHHHHHHHcCC-----CHHHHH
Q 004582 582 LYLDCTSKLVRLL------------EDPILSSYCIKIIKALC--TSEARAAVAESNPCIDSIAKLLETG-----TREEQE 642 (744)
Q Consensus 582 v~aG~v~~Lv~lL------------~~~~l~~~al~~L~nLa--~~e~~~~i~~~~g~V~~Lv~lL~~~-----s~~~~e 642 (744)
...--+..|+.+- .+-.+..+++.+|.|+. ++..+....+ ...+..+.+.+... -...+-
T Consensus 84 ~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~Sq~~q~~~~~-~~~~~~ll~~v~~~~er~~~~~~~~ 162 (532)
T KOG4464|consen 84 TNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHSQRAQDLFLE-NPLTGKLLQRVLGEFERNFPKDSSI 162 (532)
T ss_pred cchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhccHHHHHHHHh-hhhHHHHHHHHHHHHHhcCCccchh
Confidence 1111222222222 11246789999999999 6777777777 46677777766421 112223
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHhCCcHHHHHHHhhcC---------CH---HHHHHHHHHHHHhh
Q 004582 643 HIVDVLLSLCHEH-TKYCQLANTESIIQCVVDISVNG---------NS---RGKETAKELIMLLD 694 (744)
Q Consensus 643 ~A~~~L~~Lc~~~-~~~~~~v~~~G~i~~Lv~Ll~~~---------s~---~~r~~A~~lL~~L~ 694 (744)
.=++.|.-|..-. ....+.+...++++.+-..+.+. .+ .--..|..+|..|=
T Consensus 163 ~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~F 227 (532)
T KOG4464|consen 163 FDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFF 227 (532)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHh
Confidence 3344444443332 34567777888999888887632 22 44567777777663
No 296
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=47.82 E-value=3.4e+02 Score=28.06 Aligned_cols=125 Identities=13% Similarity=0.071 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcCc--------------------cHHHHHHHHHHHhc-CHHHH
Q 004582 558 RESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLEDP--------------------ILSSYCIKIIKALC-TSEAR 616 (744)
Q Consensus 558 ~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~--------------------~l~~~al~~L~nLa-~~e~~ 616 (744)
......++..+..|...++....+...+.++.+.+.|..- .+...=...|+.|+ ++.|.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 3444556666667766666555556667777777766210 12344467889999 99998
Q ss_pred HHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 004582 617 AAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLL 693 (744)
Q Consensus 617 ~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L 693 (744)
..+-+ .+....+..+....+. .....-+|.+|=.+-....+ ..|-..+.+++..+|-.|...|+.+
T Consensus 158 ~lLe~-~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~~~~R--------~iLsKaLt~~s~~iRl~aT~~L~~l 223 (226)
T PF14666_consen 158 KLLER-WNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVDGHPR--------IILSKALTSGSESIRLYATKHLRVL 223 (226)
T ss_pred HHHHH-CCHHHHHHHHHccCch--HHHHHHHHhhCCCCCccHHH--------HHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 87777 6999999999876533 22222233333222112222 2356678899999999999988765
No 297
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=47.03 E-value=1.7e+02 Score=35.75 Aligned_cols=262 Identities=14% Similarity=0.092 Sum_probs=144.4
Q ss_pred HHHHhhc-CCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcc
Q 004582 423 TSLSKLA-SRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMP 501 (744)
Q Consensus 423 ~ll~~L~-s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~ 501 (744)
.....|. ..++.+|.-+...+..+++.-.. .....+.++.++.++.+ ....++.+|...+.++...-....
T Consensus 240 ~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~D----dqdsVr~~a~~~~~~l~~l~~~~~- 311 (759)
T KOG0211|consen 240 PIVQSLCQDDTPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRD----DQDSVREAAVESLVSLLDLLDDDD- 311 (759)
T ss_pred HHHHhhccccchhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhc----chhhHHHHHHHHHHHHHHhcCCch-
Confidence 3444443 44678888888888888765332 66778999999999988 456788888888877754221111
Q ss_pred cccccchHHHHHhhcchhH---HHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcC--Ccc
Q 004582 502 LFHKDEICTFALFLDSEIM---EEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSS--GDN 576 (744)
Q Consensus 502 iv~~Gai~~Lv~lL~s~~~---e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~--~~~ 576 (744)
=...-..+.++...+.+.- .........|+..-. ........+++...+++....+.+...+.-..-+.. +.+
T Consensus 312 d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~--~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~ 389 (759)
T KOG0211|consen 312 DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVG--PSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNAS 389 (759)
T ss_pred hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhc--cccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcc
Confidence 1122345555555554421 222222222221000 011122345556666655544555554444433333 233
Q ss_pred hHHHHHhcCCcHhHHHHhcCc--cHHHHHHHHHHHhc--CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Q 004582 577 IVYHILYLDCTSKLVRLLEDP--ILSSYCIKIIKALC--TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLC 652 (744)
Q Consensus 577 n~~~iv~aG~v~~Lv~lL~~~--~l~~~al~~L~nLa--~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc 652 (744)
....+....++|.+-.+..+. .+....+....+++ .+ +..-+ .-..|.+...+....+.++.+....+..+=
T Consensus 390 ~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~ti--~~llp~~~~~l~de~~~V~lnli~~ls~~~ 465 (759)
T KOG0211|consen 390 CYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KERTI--SELLPLLIGNLKDEDPIVRLNLIDKLSLLE 465 (759)
T ss_pred cccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcCc--cccChhhhhhcchhhHHHHHhhHHHHHHHH
Confidence 445555666677777777554 34444455555555 22 11111 234566666677777888888776554332
Q ss_pred cCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcCC
Q 004582 653 HEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLDHCKE 698 (744)
Q Consensus 653 ~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~~~~~ 698 (744)
............+..+|.++++.....-+++....+-+..+..+..
T Consensus 466 ~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~ 511 (759)
T KOG0211|consen 466 EVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG 511 (759)
T ss_pred hccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh
Confidence 2222222334445567888888877777777777777766664433
No 298
>PLN02436 cellulose synthase A
Probab=46.61 E-value=16 Score=45.31 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=37.7
Q ss_pred cccccccc-----cCCCceec--CCCccccHHHHHHHHccCCCCCCCCCCCCC
Q 004582 265 FKCSISLR-----LMYDPVVI--ASGKTFERVWIQKWFNAGHTTCPKTHMRLD 310 (744)
Q Consensus 265 f~CPI~~~-----~m~dPV~~--~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~ 310 (744)
-.|.||++ ..-||.+. .||.-.||.|.+-=-++|+..||.|+.++.
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 37999975 45667766 689999999997667789999999998876
No 299
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=46.46 E-value=1.4e+02 Score=27.48 Aligned_cols=138 Identities=14% Similarity=0.178 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHhhhc-chhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCC-CcccccccchHHH
Q 004582 434 GSQCDAVENIKKLLKDN-GQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRD-EMPLFHKDEICTF 511 (744)
Q Consensus 434 e~q~~Al~~Lr~Lak~~-~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~n-k~~iv~~Gai~~L 511 (744)
-++.+.+..+..+++.+ ++.+ ..+++.++.+++. ++......+.+|..+...-.+ +.......--
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~W-----p~~l~~l~~~~~~-----~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~--- 69 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQW-----PDFLEDLLQLLQS-----SPQHLELVLRILRILPEEITDFRRSSLSQERR--- 69 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTS-----TTHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHH---
T ss_pred hHHHHHHHHHHHHHHHHChhhC-----chHHHHHHHHhcc-----chhHHHHHHHHHHHHHHHHHhhhchhhhHHHH---
Confidence 35666777777777654 3333 3577888888875 466666777776666442111 0000000000
Q ss_pred HHhhcchhHHHHHHHHHHhccChhhhHHHHh--cCCchhhhcccccCC----HHHHHHHHHHHHHhcCCcchHHHHHhcC
Q 004582 512 ALFLDSEIMEEALEIIEVLSHQQNYASELVA--SGIIPSIIKFLDTGT----RESRELAIKILCNLSSGDNIVYHILYLD 585 (744)
Q Consensus 512 v~lL~s~~~e~A~~~L~~Ls~~~~~k~~I~~--~G~Ip~Lv~lL~s~~----~~~k~~A~~aL~nLs~~~~n~~~iv~aG 585 (744)
.+-+..+.+ ...+..+.++|.... .+....++.++......-+ -..+...+
T Consensus 70 ----------------------~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~-~~~i~~~~ 126 (148)
T PF08389_consen 70 ----------------------RELKDALRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP-IELIINSN 126 (148)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS--HHHHHSSS
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC-HHHhccHH
Confidence 000111111 122333444444332 6788889999988777433 45566778
Q ss_pred CcHhHHHHhcCccHHHHHHHHH
Q 004582 586 CTSKLVRLLEDPILSSYCIKII 607 (744)
Q Consensus 586 ~v~~Lv~lL~~~~l~~~al~~L 607 (744)
.++.+..+|.++.+.+.|+.+|
T Consensus 127 ~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 127 LLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHhC
Confidence 9999999999999999988876
No 300
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=46.33 E-value=1e+02 Score=29.94 Aligned_cols=103 Identities=16% Similarity=0.166 Sum_probs=67.9
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhh--CCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCc
Q 004582 423 TSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFL--NSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEM 500 (744)
Q Consensus 423 ~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~--~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~ 500 (744)
++...|.+.+.+.|..++..++..+..++ ++.+.+ .-.+..|+.+|+.. .++.+.+.++.+|..+...-+.+.
T Consensus 29 ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~---~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 29 RINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKP---DPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhcCCC
Confidence 56677788889999999999999987653 334433 34688899999873 567888999999999876555544
Q ss_pred ccccc-------cchHHHHHhhcc-hhHHHHHHHHHHh
Q 004582 501 PLFHK-------DEICTFALFLDS-EIMEEALEIIEVL 530 (744)
Q Consensus 501 ~iv~~-------Gai~~Lv~lL~s-~~~e~A~~~L~~L 530 (744)
.+.+. +.+..++.+++. ...+.++.+|..|
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~l 141 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATL 141 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 44332 233444444442 3345555555443
No 301
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=46.31 E-value=73 Score=29.83 Aligned_cols=71 Identities=11% Similarity=0.031 Sum_probs=56.1
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhc-chhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcC
Q 004582 423 TSLSKLASRPWGSQCDAVENIKKLLKDN-GQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQ 495 (744)
Q Consensus 423 ~ll~~L~s~~~e~q~~Al~~Lr~Lak~~-~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~ 495 (744)
.+-.+|.+.++.++..|+..|-.+.+.. ..-...+...+++..|+++++... ..+.++...+..+......
T Consensus 41 ~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~--~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 41 LLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKY--PLPLVKKRILELIQEWADA 112 (133)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCC--CcHHHHHHHHHHHHHHHHH
Confidence 3557789999999999999999999874 455667888899999999998732 2334888888888877653
No 302
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=46.18 E-value=4.3e+02 Score=32.69 Aligned_cols=166 Identities=15% Similarity=0.246 Sum_probs=96.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCcccccccchHHHHHhhc--chh--HHHHHHHHHHhccChhhhHHHH--hcCCchhhh
Q 004582 477 CDAKAQKDGAEVLLAILSQSRDEMPLFHKDEICTFALFLD--SEI--MEEALEIIEVLSHQQNYASELV--ASGIIPSII 550 (744)
Q Consensus 477 ~d~~~q~~A~~~L~nLs~~~~nk~~iv~~Gai~~Lv~lL~--s~~--~e~A~~~L~~Ls~~~~~k~~I~--~~G~Ip~Lv 550 (744)
.+-.-+..|+..+.....+..-.......|.+..++.... ... ...|+.+|..++.. .+.... ..+..|.|+
T Consensus 265 ~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~--lr~~~~~~~~~v~p~ll 342 (815)
T KOG1820|consen 265 KKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK--LRPLFRKYAKNVFPSLL 342 (815)
T ss_pred cchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh--cchhhHHHHHhhcchHH
Confidence 5777788888888887776651111112244444444432 222 24566666655542 222222 356888999
Q ss_pred cccccCCHHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcC--ccHHHHHHHHHHHhc--CH---HHHHHHHhhC
Q 004582 551 KFLDTGTRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLED--PILSSYCIKIIKALC--TS---EARAAVAESN 623 (744)
Q Consensus 551 ~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~--~~l~~~al~~L~nLa--~~---e~~~~i~~~~ 623 (744)
+-+......++..+..++-..+... .-...++.++.++.+ +.+...+...+.... .+ ..+.++ .
T Consensus 343 d~lkekk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~---~ 413 (815)
T KOG1820|consen 343 DRLKEKKSELRDALLKALDAILNST------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETV---K 413 (815)
T ss_pred HHhhhccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhH---H
Confidence 9888777777766666554433311 112344556666755 456666665555444 22 222222 2
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Q 004582 624 PCIDSIAKLLETGTREEQEHIVDVLLSLCH 653 (744)
Q Consensus 624 g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~ 653 (744)
++++.++....+.+..+|..|..++..+-.
T Consensus 414 ~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 414 TLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred HHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 568888888888899999999888877653
No 303
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=46.09 E-value=15 Score=33.19 Aligned_cols=49 Identities=29% Similarity=0.504 Sum_probs=39.4
Q ss_pred hhcchhH-HHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHH
Q 004582 514 FLDSEIM-EEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRE 562 (744)
Q Consensus 514 lL~s~~~-e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~ 562 (744)
+++|+.. ..+...|..|+..++.-..+++.|+++.|+.+|.+.|.++..
T Consensus 56 FmdSE~dLd~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 56 FMDSEVDLDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHhHHHHHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 4455543 567888889999999888999999999999999998876543
No 304
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=45.71 E-value=16 Score=41.29 Aligned_cols=149 Identities=11% Similarity=0.032 Sum_probs=85.4
Q ss_pred hCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcC----CCCCccccc-c-c-chHHHHHhh------cchhHHHHHH
Q 004582 459 LNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQ----SRDEMPLFH-K-D-EICTFALFL------DSEIMEEALE 525 (744)
Q Consensus 459 ~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~----~~nk~~iv~-~-G-ai~~Lv~lL------~s~~~e~A~~ 525 (744)
-.++...+...|.+ ..-..|..+.+++.|++.- -.+.....+ . | .+..++..- +..+..+|..
T Consensus 431 v~~aa~~il~sl~d----~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navr 506 (728)
T KOG4535|consen 431 VADAANAILMSLED----KSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVR 506 (728)
T ss_pred HHHHHHHHHHHhhh----HhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 34556667777765 4567889999999999642 112111110 0 1 112222221 1123467888
Q ss_pred HHHHhccChh-----hhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCCcchHHHH--HhcCCcHhHHHHhcC--
Q 004582 526 IIEVLSHQQN-----YASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIVYHI--LYLDCTSKLVRLLED-- 596 (744)
Q Consensus 526 ~L~~Ls~~~~-----~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~i--v~aG~v~~Lv~lL~~-- 596 (744)
+|.|+...-+ .-..+.+...+..+-..+-.+...+|.+|+-+|.||-+++.-+-+= ...-+++.|..++.+
T Consensus 507 aLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~ 586 (728)
T KOG4535|consen 507 ALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCK 586 (728)
T ss_pred HHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhc
Confidence 8887765432 1122222222222223444567789999999999999987643222 123467778887754
Q ss_pred -ccHHHHHHHHHHHhc
Q 004582 597 -PILSSYCIKIIKALC 611 (744)
Q Consensus 597 -~~l~~~al~~L~nLa 611 (744)
-.++.+|+++|..-+
T Consensus 587 NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 587 NFKVRIRAAAALSVPG 602 (728)
T ss_pred cceEeehhhhhhcCCC
Confidence 367788888887777
No 305
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.51 E-value=5.6e+02 Score=31.33 Aligned_cols=195 Identities=15% Similarity=0.177 Sum_probs=112.0
Q ss_pred HHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcccccccchHHHHHhhcchhHH---HHHHHHHHhccChhhhHHHH
Q 004582 465 PLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPLFHKDEICTFALFLDSEIME---EALEIIEVLSHQQNYASELV 541 (744)
Q Consensus 465 ~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~iv~~Gai~~Lv~lL~s~~~e---~A~~~L~~Ls~~~~~k~~I~ 541 (744)
.|..+|.+ .....+..|+.-+..+.-.+.+. ...++..|....+.+.| ..---|..-+..+++-..+
T Consensus 39 dL~~lLdS----nkd~~KleAmKRIia~iA~G~dv-----S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL- 108 (968)
T KOG1060|consen 39 DLKQLLDS----NKDSLKLEAMKRIIALIAKGKDV-----SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL- 108 (968)
T ss_pred HHHHHHhc----cccHHHHHHHHHHHHHHhcCCcH-----HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee-
Confidence 45667766 34555666666666665544441 23455555555443322 1111122222222211111
Q ss_pred hcCCchhhhcccccCCHHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHH----HhcCc--cHHHHHHHHHHHhc--CH
Q 004582 542 ASGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVR----LLEDP--ILSSYCIKIIKALC--TS 613 (744)
Q Consensus 542 ~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~----lL~~~--~l~~~al~~L~nLa--~~ 613 (744)
-|..+-+-|+..|..+|.-|+.+|..+=. -+ ++|.++- ...|+ -++..|+-++-.|- .+
T Consensus 109 ---SIntfQk~L~DpN~LiRasALRvlSsIRv------p~----IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~ 175 (968)
T KOG1060|consen 109 ---SINTFQKALKDPNQLIRASALRVLSSIRV------PM----IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP 175 (968)
T ss_pred ---eHHHHHhhhcCCcHHHHHHHHHHHHhcch------hh----HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh
Confidence 34556677888999999888888865432 11 1122222 22443 46777777777776 77
Q ss_pred HHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 004582 614 EARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLL 693 (744)
Q Consensus 614 e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L 693 (744)
+.+.++.+ .+=.||...+|.+.-.|+.+.-.+|-+.- .++ .+-...|..++.+-+.=.|-.....|-.-
T Consensus 176 e~k~qL~e------~I~~LLaD~splVvgsAv~AF~evCPerl---dLI--HknyrklC~ll~dvdeWgQvvlI~mL~RY 244 (968)
T KOG1060|consen 176 EQKDQLEE------VIKKLLADRSPLVVGSAVMAFEEVCPERL---DLI--HKNYRKLCRLLPDVDEWGQVVLINMLTRY 244 (968)
T ss_pred hhHHHHHH------HHHHHhcCCCCcchhHHHHHHHHhchhHH---HHh--hHHHHHHHhhccchhhhhHHHHHHHHHHH
Confidence 77775544 34457788999999999999999985432 222 33456677777777776666666655333
No 306
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=45.47 E-value=49 Score=29.03 Aligned_cols=70 Identities=16% Similarity=0.147 Sum_probs=52.9
Q ss_pred cHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCC
Q 004582 421 DLTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQS 496 (744)
Q Consensus 421 ~~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~ 496 (744)
+.+.+..|.++.+-+|-+++..|+.+.+... ...+...+++..+...|++ .|+=+--+|+..|..|+...
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d----~DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKD----EDSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCC----CCchHHHHHHHHHHHHHHHC
Confidence 3467778888888899999999999998755 1222234666777777877 68888889999988887643
No 307
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=45.44 E-value=15 Score=45.67 Aligned_cols=45 Identities=18% Similarity=0.284 Sum_probs=37.0
Q ss_pred ccccccc-----cCCCceec--CCCccccHHHHHHHHccCCCCCCCCCCCCC
Q 004582 266 KCSISLR-----LMYDPVVI--ASGKTFERVWIQKWFNAGHTTCPKTHMRLD 310 (744)
Q Consensus 266 ~CPI~~~-----~m~dPV~~--~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~ 310 (744)
.|.||++ .+-||.+. .||.-.||.|.|-=-++|+..||.|+.++.
T Consensus 19 iCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 19 VCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred eeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 7999975 35667765 789999999997667789999999998776
No 308
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=45.18 E-value=11 Score=39.94 Aligned_cols=27 Identities=7% Similarity=0.340 Sum_probs=20.8
Q ss_pred ccccccccccCC---CceecCCCccccHHH
Q 004582 264 EFKCSISLRLMY---DPVVIASGKTFERVW 290 (744)
Q Consensus 264 ~f~CPI~~~~m~---dPV~~~~G~ty~r~~ 290 (744)
.|.||+|+.-|. ....-+.||+||..-
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~a~ 31 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDCAK 31 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCcccc
Confidence 489999999985 335557899998863
No 309
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=44.38 E-value=57 Score=38.66 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=67.9
Q ss_pred HhHHHHhcCcc--HHHHHHHHHHHhc-CHHHHHHHHh----h-CCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH
Q 004582 588 SKLVRLLEDPI--LSSYCIKIIKALC-TSEARAAVAE----S-NPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYC 659 (744)
Q Consensus 588 ~~Lv~lL~~~~--l~~~al~~L~nLa-~~e~~~~i~~----~-~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~ 659 (744)
..++.+|.+.+ ++...+.+++|+. +-....++++ . +..|..|++-+...+|-+|..|+.++..+|-.+..+
T Consensus 302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~- 380 (1128)
T COG5098 302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT- 380 (1128)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc-
Confidence 45667776654 3444566677776 3221112322 1 123444444555789999999999999998554321
Q ss_pred HHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHh-hhcCCC
Q 004582 660 QLANTESIIQCVVDISVNGNSRGKETAKELIMLL-DHCKED 699 (744)
Q Consensus 660 ~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L-~~~~~~ 699 (744)
.-.++.++...+.-+++.+..+|++|.+++.-| .+++..
T Consensus 381 -~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF~ 420 (1128)
T COG5098 381 -VGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPFA 420 (1128)
T ss_pred -cchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCChh
Confidence 112233566677788899999999999998644 344433
No 310
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=44.26 E-value=12 Score=35.72 Aligned_cols=38 Identities=18% Similarity=0.435 Sum_probs=24.2
Q ss_pred CCccccccccccCCCceecCCCccccHHHHHHHHc-cCCCCCCCCCCCCCC
Q 004582 262 PEEFKCSISLRLMYDPVVIASGKTFERVWIQKWFN-AGHTTCPKTHMRLDN 311 (744)
Q Consensus 262 p~~f~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~-~~~~~cP~t~~~l~~ 311 (744)
...|.||- ||++|.-.-.....+ .|..+||.||.+|..
T Consensus 97 ~~~Y~Cp~------------C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 97 NAYYKCPN------------CQSKYTFLEANQLLDMDGTFTCPRCGEELEE 135 (147)
T ss_pred CcEEECcC------------CCCEeeHHHHHHhcCCCCcEECCCCCCEEEE
Confidence 46899995 555666433333322 345789999998753
No 311
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=43.78 E-value=6.1e+02 Score=30.36 Aligned_cols=161 Identities=16% Similarity=0.185 Sum_probs=82.9
Q ss_pred HHHHHHHhccChhhhHHHHh----cCCchhhhcccccCCHHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHh----
Q 004582 523 ALEIIEVLSHQQNYASELVA----SGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLL---- 594 (744)
Q Consensus 523 A~~~L~~Ls~~~~~k~~I~~----~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL---- 594 (744)
|+-+|..+..+...-..+.. +..+..++..+. +++.-+..++++|.|+-.++.++.-+... ...++..+
T Consensus 564 alDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~--~~~i~~~~~~~~ 640 (745)
T KOG0301|consen 564 ALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR--LESILDPVIEAS 640 (745)
T ss_pred HHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH--HHHHhhhhhhhh
Confidence 55555555554433333221 234555555555 66778888999999999998777766443 22222222
Q ss_pred --cCccHHHHHHHHHHHhc---CHHHHHHHHhhCCcHHHHHHHHcCC-----CHHHHHHHHHHHHHHhcCCHHHHHHHHh
Q 004582 595 --EDPILSSYCIKIIKALC---TSEARAAVAESNPCIDSIAKLLETG-----TREEQEHIVDVLLSLCHEHTKYCQLANT 664 (744)
Q Consensus 595 --~~~~l~~~al~~L~nLa---~~e~~~~i~~~~g~V~~Lv~lL~~~-----s~~~~e~A~~~L~~Lc~~~~~~~~~v~~ 664 (744)
.+..+.........|++ ...+-+ .|..+.|...+.+. +-+..-.++.+|.+|+..+....+.+..
T Consensus 641 s~~~knl~ia~atlaln~sv~l~~~~~~-----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A~~ 715 (745)
T KOG0301|consen 641 SLSNKNLQIALATLALNYSVLLIQDNEQ-----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLAKN 715 (745)
T ss_pred cccchhHHHHHHHHHHHHHHHHHhcccc-----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHHHh
Confidence 11233333333333454 121111 24445555555431 2223445566777777777666666655
Q ss_pred CCcHHHHHHHh-hc-CCHHHHHHHHHHHHH
Q 004582 665 ESIIQCVVDIS-VN-GNSRGKETAKELIML 692 (744)
Q Consensus 665 ~G~i~~Lv~Ll-~~-~s~~~r~~A~~lL~~ 692 (744)
-++ ..+..-+ .. .++..+..|..+|+.
T Consensus 716 ~~v-~sia~~~~~~~~~~~~k~~a~~il~~ 744 (745)
T KOG0301|consen 716 RSV-DSIAKKLKEAVSNPSGKNIARDILSL 744 (745)
T ss_pred cCH-HHHHHHHHHhccCchhhHHHHHHHhc
Confidence 554 3344433 32 234555556555554
No 312
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=43.49 E-value=5.6e+02 Score=29.39 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=46.2
Q ss_pred HHHHhhcCC-CHHHHHHHHHHHHHHhhhc-chhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCC
Q 004582 423 TSLSKLASR-PWGSQCDAVENIKKLLKDN-GQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDE 499 (744)
Q Consensus 423 ~ll~~L~s~-~~e~q~~Al~~Lr~Lak~~-~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk 499 (744)
.++..+... ..+.+..|+..|-.+..++ -..|..-.. ..+..++..|++. .+...++.|+.+|..++.+...+
T Consensus 290 ~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~-~iL~~l~EvL~d~---~~~~~k~laLrvL~~ml~~Q~~~ 364 (516)
T KOG2956|consen 290 DLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFA-EILLLLLEVLSDS---EDEIIKKLALRVLREMLTNQPAR 364 (516)
T ss_pred HHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHH-HHHHHHHHHHccc---hhhHHHHHHHHHHHHHHHhchHh
Confidence 344444444 5677888888777766544 334443222 3456777888763 57778888888888877655443
No 313
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.07 E-value=1e+02 Score=33.14 Aligned_cols=130 Identities=15% Similarity=0.177 Sum_probs=79.9
Q ss_pred hhcccccCCHHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcCc--cHHHHHHHHHHHhc-CH-HHHHHHHhhCC
Q 004582 549 IIKFLDTGTRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLEDP--ILSSYCIKIIKALC-TS-EARAAVAESNP 624 (744)
Q Consensus 549 Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~--~l~~~al~~L~nLa-~~-e~~~~i~~~~g 624 (744)
.+..|.+.+-+.+..++..|..|+..+..-..=.=..+|..+++-+.+. .+.+.|+.++..+. .- ......
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~----- 167 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE----- 167 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 3445556666677777778888877665111111124566666666664 56788888888888 32 222222
Q ss_pred cHHHHHH-HHcC---CCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHH
Q 004582 625 CIDSIAK-LLET---GTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIM 691 (744)
Q Consensus 625 ~V~~Lv~-lL~~---~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~ 691 (744)
.+.++. ||.. +..-+++.|-.+|..+..+-.. .-+++.|...+.+.+++++.+|+..+.
T Consensus 168 -ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~ 230 (334)
T KOG2933|consen 168 -LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFS 230 (334)
T ss_pred -HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhcccc
Confidence 233333 3333 3445788998888888654321 225677788888899999988876654
No 314
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=42.98 E-value=6.2e+02 Score=29.79 Aligned_cols=144 Identities=11% Similarity=0.123 Sum_probs=65.1
Q ss_pred HHHHHhhhhhHHhhCCC--CCcchhhhhhHHHHHHHHHHHHHHhhccCeeeehhhhh------HHHHHHHHHHHHHHHHH
Q 004582 31 INKISHIHSDIESARPG--CTSGIHVLCSFHVAVDKSKLLIQYCSESSKLYLAITAD------RIQMKFERVRNTLELCL 102 (744)
Q Consensus 31 ~~ri~~l~~~lee~r~~--~~~~~~~l~~L~~~l~~ak~Ll~~c~~~Sklyl~~~~~------~i~~~~~~~~~~l~~~L 102 (744)
-+++..+--.++|+... .+.-...|..-+..|..+..+.+.+... |-++..+ .+...+..+.+.+...+
T Consensus 188 ~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~e~i~~~~~~~---~~~L~~~~~~~~~~~~~~l~~~~~~l~~~~ 264 (563)
T TIGR00634 188 AQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLEKLRELSQNA---LAALRGDVDVQEGSLLEGLGEAQLALASVI 264 (563)
T ss_pred HHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCHHHHHHHHHHH---HHHHhCCccccccCHHHHHHHHHHHHHHhh
Confidence 34444444445555321 2344556666666666666666655544 1222222 35555555555554431
Q ss_pred Hh-hhhhc--hHhHHHHHHHHHHHHhhccccCCcchhHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHhccCCCCHHHH
Q 004582 103 SQ-IQNIV--PSLLAAKVSDIIHDIRNAKFPLEPSEDEAGKVLLALLHRGISASSFINQLELEALQLAALRLNITSPLAL 179 (744)
Q Consensus 103 ~~-i~~~~--~~~l~~~v~~~~~~l~~~~~~~d~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~l~l~~~~~~ 179 (744)
+. +..+. -.++..+++++..++++..-.++...+++.+ +. ..+..+..+.++.| .+..++
T Consensus 265 d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~e-le---------------~RL~~l~~LkrKyg-~s~e~l 327 (563)
T TIGR00634 265 DGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNE-IE---------------ERLAQIKRLKRKYG-ASVEEV 327 (563)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH-HH---------------HHHHHHHHHHHHhC-CCHHHH
Confidence 10 00000 0123345566666666543333333322222 22 12334455556666 355666
Q ss_pred HHHHHHHHHHHHHhc
Q 004582 180 LIEKRSIKRLLQKIC 194 (744)
Q Consensus 180 ~~E~~~l~~~~~~~~ 194 (744)
......+++.++...
T Consensus 328 ~~~~~~l~~eL~~l~ 342 (563)
T TIGR00634 328 LEYAEKIKEELDQLD 342 (563)
T ss_pred HHHHHHHHHHHHHHh
Confidence 655555555554433
No 315
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=42.63 E-value=5.7e+02 Score=29.28 Aligned_cols=253 Identities=15% Similarity=0.111 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhccccc-CCCHHHHHHHHHHHHHHhcCCCCCcccccccchHHH
Q 004582 433 WGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHN-LCDAKAQKDGAEVLLAILSQSRDEMPLFHKDEICTF 511 (744)
Q Consensus 433 ~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~-~~d~~~q~~A~~~L~nLs~~~~nk~~iv~~Gai~~L 511 (744)
...|.+|+..|+...+.-+ ...|+.+...-++-.+ ....++++.|...|..+......+....+.-.+..+
T Consensus 4 l~~R~~a~~~l~~~i~~~~--------~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I 75 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYP--------LSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDI 75 (464)
T ss_pred HHHHHHHHHHHHHHHHhCC--------chHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHH
Confidence 4556777777776654321 1334444443332221 235678888888888887766654433333333333
Q ss_pred HHhhcchhHHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCCcchHHHH--HhcCCcHh
Q 004582 512 ALFLDSEIMEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIVYHI--LYLDCTSK 589 (744)
Q Consensus 512 v~lL~s~~~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~i--v~aG~v~~ 589 (744)
..--..+....-+.+|..|+.+..+-.. .+.+..|.|..-|..--..++. +-.....-+..+...... .+.+.+..
T Consensus 76 ~~~~~~~d~~~~l~aL~~LT~~Grdi~~-~~~~i~~~L~~wl~~~~~~~~~-~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (464)
T PF11864_consen 76 SDPSNDDDFDLRLEALIALTDNGRDIDF-FEYEIGPFLLSWLEPSYQAARS-ARRKAKKSSSSKSKGLSNLDNEESNLSD 153 (464)
T ss_pred hcCCCchhHHHHHHHHHHHHcCCcCchh-cccchHHHHHHHHHHHHHHHHH-HHHHhhccccccccccccccchhhhHHH
Confidence 1111122335677788888875544422 3677777777766432211111 000000001111111111 13344445
Q ss_pred HHHHhcC----------ccHHHHHHHHHHHhc----CHHH---H----HHHHhh----CCcHHHHHHHHcC--CCHHHHH
Q 004582 590 LVRLLED----------PILSSYCIKIIKALC----TSEA---R----AAVAES----NPCIDSIAKLLET--GTREEQE 642 (744)
Q Consensus 590 Lv~lL~~----------~~l~~~al~~L~nLa----~~e~---~----~~i~~~----~g~V~~Lv~lL~~--~s~~~~e 642 (744)
|+.++.+ ++.....+.-+..+| .++. . .+++.. .+.++.++..|-+ +.....+
T Consensus 154 ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~ 233 (464)
T PF11864_consen 154 LLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCK 233 (464)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccch
Confidence 5555421 122222222233333 1111 1 122221 1234445555532 3446667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhc------CCHHHHHHHHHHHHHhh-hcCCCCCc
Q 004582 643 HIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVN------GNSRGKETAKELIMLLD-HCKEDNAS 702 (744)
Q Consensus 643 ~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~------~s~~~r~~A~~lL~~L~-~~~~~~~~ 702 (744)
.+..++.+||.....+ -++..|..++.+ .+..+-+-|...|+.+- +.++...+
T Consensus 234 ~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~ 293 (464)
T PF11864_consen 234 PSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYP 293 (464)
T ss_pred hHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcc
Confidence 7777888887543221 245677777732 23455677888887665 44444444
No 316
>PF14353 CpXC: CpXC protein
Probab=42.02 E-value=16 Score=33.99 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=33.7
Q ss_pred ccccccccccCCCceecCCCccccHHHHHHHHccC--CCCCCCCCCCC
Q 004582 264 EFKCSISLRLMYDPVVIASGKTFERVWIQKWFNAG--HTTCPKTHMRL 309 (744)
Q Consensus 264 ~f~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~~~--~~~cP~t~~~l 309 (744)
+..||-|+..+.=.|-..---+-+....++-++.. ..+||.||...
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~ 48 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKF 48 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCce
Confidence 35799999988888777666667777777777432 45799998764
No 317
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=41.97 E-value=18 Score=44.81 Aligned_cols=46 Identities=17% Similarity=0.249 Sum_probs=37.5
Q ss_pred cccccccc-----cCCCceec--CCCccccHHHHHHHHccCCCCCCCCCCCCC
Q 004582 265 FKCSISLR-----LMYDPVVI--ASGKTFERVWIQKWFNAGHTTCPKTHMRLD 310 (744)
Q Consensus 265 f~CPI~~~-----~m~dPV~~--~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~ 310 (744)
-.|.||++ ..-||.+. .||.-.||.|.+-=-++|+..||.|+.++.
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 45888865 46678776 789999999997667789999999998876
No 318
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=41.60 E-value=2.2e+02 Score=30.44 Aligned_cols=152 Identities=14% Similarity=0.166 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCCcchHHH---------HHhcCCcHh
Q 004582 519 IMEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIVYH---------ILYLDCTSK 589 (744)
Q Consensus 519 ~~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~---------iv~aG~v~~ 589 (744)
+.+.|+.+|...+..+.. + ....++.+.+.+..++.+++..|+.+|+.+....+-... .-....+..
T Consensus 43 vR~~al~cLGl~~Lld~~---~-a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~ 118 (298)
T PF12719_consen 43 VRELALKCLGLCCLLDKE---L-AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKI 118 (298)
T ss_pred HHHHHHHHHHHHHHhChH---H-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHH
Confidence 346677777655554431 1 122366777777778889999999999988764431111 111245555
Q ss_pred HHHHhc--CccHHHHHHHHHHHhc-CHHHHHHHHhhCCcHHHHHHHH-c---CCCHHHHHHHHHHHHHHhcCCHHHHHHH
Q 004582 590 LVRLLE--DPILSSYCIKIIKALC-TSEARAAVAESNPCIDSIAKLL-E---TGTREEQEHIVDVLLSLCHEHTKYCQLA 662 (744)
Q Consensus 590 Lv~lL~--~~~l~~~al~~L~nLa-~~e~~~~i~~~~g~V~~Lv~lL-~---~~s~~~~e~A~~~L~~Lc~~~~~~~~~v 662 (744)
+.+.|. +++++..|+..++.|- +..... . ...+..|+-+- . ..++..++.-...+-..|..+..+ +..
T Consensus 119 l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~-~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~-Q~~ 193 (298)
T PF12719_consen 119 LTKFLDSENPELQAIAVEGLCKLLLSGRISD---P-PKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPEN-QER 193 (298)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---H-HHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHH-HHH
Confidence 666664 3567778888888776 322111 0 12233333222 1 234667776666777777766554 566
Q ss_pred HhCCcHHHHHHHhhcCC
Q 004582 663 NTESIIQCVVDISVNGN 679 (744)
Q Consensus 663 ~~~G~i~~Lv~Ll~~~s 679 (744)
...+.+|.+..+.....
T Consensus 194 l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 194 LAEAFLPTLRTLSNAPD 210 (298)
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 77888898888877544
No 319
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.11 E-value=2.9e+02 Score=33.92 Aligned_cols=68 Identities=12% Similarity=0.123 Sum_probs=51.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhc
Q 004582 422 LTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILS 494 (744)
Q Consensus 422 ~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~ 494 (744)
.+.+..+.++...+|-.|+..|+.+.+.- .....+...+++...+..|++ .|+-+--+|+..+.-||.
T Consensus 730 qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~Lkd----edsyvyLnaI~gv~~Lce 797 (982)
T KOG4653|consen 730 QEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKD----EDSYVYLNAIRGVVSLCE 797 (982)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcc----cCceeeHHHHHHHHHHHH
Confidence 35667778888889999999999999753 445556778999999999998 676666676665555554
No 320
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=40.52 E-value=2.3e+02 Score=34.49 Aligned_cols=187 Identities=17% Similarity=0.100 Sum_probs=112.0
Q ss_pred HHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcccccccchH--HHHHhhcc--
Q 004582 442 NIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPLFHKDEIC--TFALFLDS-- 517 (744)
Q Consensus 442 ~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~iv~~Gai~--~Lv~lL~s-- 517 (744)
.|+.....++++...+.+.|++..+.+.++.. .+...+..++..+.|++...+++........+. .+-.++..
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f---~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~ 570 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF---DNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWD 570 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc---cchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc
Confidence 88999999999999999999999999999974 567899999999999988665544322211111 22222221
Q ss_pred --hhHHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHH-hcCCcchHHHHHhcCCcHh-HHHH
Q 004582 518 --EIMEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCN-LSSGDNIVYHILYLDCTSK-LVRL 593 (744)
Q Consensus 518 --~~~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~n-Ls~~~~n~~~iv~aG~v~~-Lv~l 593 (744)
+....|+++|..+..+.+. ......+..+...+.. .........+++...-+.+ +..+
T Consensus 571 ~~ersY~~~siLa~ll~~~~~------------------~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~i 632 (699)
T KOG3665|consen 571 SIERSYNAASILALLLSDSEK------------------TTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRI 632 (699)
T ss_pred hhhHHHHHHHHHHHHHhCCCc------------------CccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHH
Confidence 2234566666655543322 0111122222222222 2222333333333333333 4444
Q ss_pred h---cCccHHHHHHHHHHHhc--CHHHHHHHHhhCCcHHHHHHHHcC-CCHHHHHHHHHHHHH
Q 004582 594 L---EDPILSSYCIKIIKALC--TSEARAAVAESNPCIDSIAKLLET-GTREEQEHIVDVLLS 650 (744)
Q Consensus 594 L---~~~~l~~~al~~L~nLa--~~e~~~~i~~~~g~V~~Lv~lL~~-~s~~~~e~A~~~L~~ 650 (744)
+ ..+...--|++++.++. .+++...+.+ .|+++.+.++-.. .....++.+..++..
T Consensus 633 l~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 694 (699)
T KOG3665|consen 633 LRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRE-SNGFELIENIRVLSEVVDVKEEAVLVIES 694 (699)
T ss_pred hcccCCCchHHHHHHHHHHHHHcChhhhhhhHh-ccchhhhhhcchhHHHHHHHHHHHHHhhc
Confidence 4 44677888999999999 7787777777 5777877766532 244555555555443
No 321
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=40.41 E-value=18 Score=36.38 Aligned_cols=46 Identities=15% Similarity=0.323 Sum_probs=37.3
Q ss_pred cccccccccCCCceec-CCCccccHHHHHHHHccCCCCCCCCCCCCCC
Q 004582 265 FKCSISLRLMYDPVVI-ASGKTFERVWIQKWFNAGHTTCPKTHMRLDN 311 (744)
Q Consensus 265 f~CPI~~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~ 311 (744)
-.|.+|..+.-.-+-- +||..|-+.||++++.+ .+.||.|+--.++
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~h 228 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWTH 228 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccCc
Confidence 5799999987666554 78899999999999987 7899999754443
No 322
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=40.05 E-value=2e+02 Score=34.45 Aligned_cols=137 Identities=16% Similarity=0.173 Sum_probs=95.2
Q ss_pred cCCchhhhcccccCCHHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcC---ccHHHHHHHHHHHhcCHHHHHHH
Q 004582 543 SGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLED---PILSSYCIKIIKALCTSEARAAV 619 (744)
Q Consensus 543 ~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~---~~l~~~al~~L~nLa~~e~~~~i 619 (744)
..++|.|..-+++.+..+++.++..+-.++..-+ ...++.-++|.|..+-.. ..++.+|+.+++.+...-.+.++
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v 465 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAV 465 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 4457888888888899999999999999887666 566777888888887532 35677888888888722233334
Q ss_pred HhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHH
Q 004582 620 AESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKET 685 (744)
Q Consensus 620 ~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~ 685 (744)
++. +..+.+-....+|.+.--.+.+...+....... +.+..+.++|.++-+...+.-.....
T Consensus 466 ~d~---~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L~~~Qy 527 (700)
T KOG2137|consen 466 LDE---LLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSLNGEQY 527 (700)
T ss_pred HHH---HHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccccHHHH
Confidence 442 444555556678888877777766665433221 55667789999999998887554443
No 323
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=39.70 E-value=91 Score=28.96 Aligned_cols=69 Identities=17% Similarity=0.316 Sum_probs=49.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHhC-CcHHHHHHHhh-----cC---CHHHHHHHHHHHHHhh
Q 004582 626 IDSIAKLLETGTREEQEHIVDVLLSLCHEHT-KYCQLANTE-SIIQCVVDISV-----NG---NSRGKETAKELIMLLD 694 (744)
Q Consensus 626 V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~-~~~~~v~~~-G~i~~Lv~Ll~-----~~---s~~~r~~A~~lL~~L~ 694 (744)
+..|.+-|.+.++-++-.|+.+|-.||..+. .+...+.+. .+|..+.+.-. .| ...+|..|..++..+-
T Consensus 40 ~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 40 LEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 4566777778889999999999999996654 444444433 36666666554 22 3478999999998775
No 324
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=39.64 E-value=12 Score=33.22 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=28.1
Q ss_pred CCCCCccccccccccCCCceec--CCCccccHHHHH
Q 004582 259 LEPPEEFKCSISLRLMYDPVVI--ASGKTFERVWIQ 292 (744)
Q Consensus 259 ~~~p~~f~CPI~~~~m~dPV~~--~~G~ty~r~~I~ 292 (744)
..+.++-.|++|++-+.+++.. |+||.|-..|+.
T Consensus 73 v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 73 VVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 4566677799999999988776 999999988875
No 325
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=39.63 E-value=1.1e+02 Score=28.78 Aligned_cols=71 Identities=13% Similarity=0.087 Sum_probs=55.9
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCcHHHHHHHhhcCC--HHHHHHHHHHHHHhhh
Q 004582 625 CIDSIAKLLETGTREEQEHIVDVLLSLCHEH-TKYCQLANTESIIQCVVDISVNGN--SRGKETAKELIMLLDH 695 (744)
Q Consensus 625 ~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~-~~~~~~v~~~G~i~~Lv~Ll~~~s--~~~r~~A~~lL~~L~~ 695 (744)
++..|-+-|.+++|.++-.|+.+|-.+..+. ......+...+.+..|+.++.... +.+++++..++.....
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 4666777788899999999999999988774 456677777788999999887643 3489999998876654
No 326
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.42 E-value=30 Score=28.68 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=30.7
Q ss_pred CceecCCCccccHHHHHHHHccCCCCCCCCCCCCCCCCCcccHHH
Q 004582 276 DPVVIASGKTFERVWIQKWFNAGHTTCPKTHMRLDNVSVTPNVAI 320 (744)
Q Consensus 276 dPV~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~~~l~pn~~l 320 (744)
|..|-.--+|||..|-+.-| +..||.||-.|...-..|--.|
T Consensus 21 dA~ICtfEcTFCadCae~~l---~g~CPnCGGelv~RP~RPaa~L 62 (84)
T COG3813 21 DARICTFECTFCADCAENRL---HGLCPNCGGELVARPIRPAAKL 62 (84)
T ss_pred ceeEEEEeeehhHhHHHHhh---cCcCCCCCchhhcCcCChHHHH
Confidence 33344446799999999877 4689999988877777775433
No 327
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=39.21 E-value=5e+02 Score=27.58 Aligned_cols=87 Identities=20% Similarity=0.266 Sum_probs=63.9
Q ss_pred CchhhhcccccCCHHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcC----ccHHHHHHHHHHHhcCHHHHHHHH
Q 004582 545 IIPSIIKFLDTGTRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLED----PILSSYCIKIIKALCTSEARAAVA 620 (744)
Q Consensus 545 ~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~----~~l~~~al~~L~nLa~~e~~~~i~ 620 (744)
+|-.|++-+..++.-.|..++.++..|-+ .-+||.|.+.|.+ +-++..|+.+|+.++++
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e------- 250 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE------- 250 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-------
Confidence 45566666666777788888877765543 3567888888854 45788999999988743
Q ss_pred hhCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 004582 621 ESNPCIDSIAKLLETGTREEQEHIVDVLLSL 651 (744)
Q Consensus 621 ~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~L 651 (744)
.+++.|.+.+...++-+++.|..+|-.+
T Consensus 251 ---~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 251 ---DCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred ---HHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 4567777788888888999888887654
No 328
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.82 E-value=1.1e+02 Score=37.30 Aligned_cols=164 Identities=13% Similarity=0.077 Sum_probs=89.1
Q ss_pred HHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHh-cC----
Q 004582 522 EALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLL-ED---- 596 (744)
Q Consensus 522 ~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL-~~---- 596 (744)
.++..|..+......+..+...+.+...+..|++.++-+--+|+..+..||.- ....++|-|.+.= ..
T Consensus 746 ~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e~Y~s~k~k~ 818 (982)
T KOG4653|consen 746 YGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSEEYLSEKKKL 818 (982)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHHHHHHhcccCC
Confidence 45555665555444455566677888888888888776666677655555532 2335666666632 11
Q ss_pred -ccHHHHHHHHHHHhc--CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHH
Q 004582 597 -PILSSYCIKIIKALC--TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVD 673 (744)
Q Consensus 597 -~~l~~~al~~L~nLa--~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~ 673 (744)
.+.+-..-.++.+++ -.+-.....+ -.+...+..++..+..-|-.++++|.+||.-......-...+ ++..++.
T Consensus 819 ~~d~~lkVGEai~k~~qa~Gel~~~y~~--~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e-v~~~Il~ 895 (982)
T KOG4653|consen 819 QTDYRLKVGEAILKVAQALGELVFKYKA--VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHE-VLQLILS 895 (982)
T ss_pred CccceehHHHHHHHHHHHhccHHHHHHH--HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH-HHHHHHH
Confidence 122222334444444 1111111111 223444555555555558899999999984432111111111 2333333
Q ss_pred H-hhcCCHHHHHHHHHHHHHhhh
Q 004582 674 I-SVNGNSRGKETAKELIMLLDH 695 (744)
Q Consensus 674 L-l~~~s~~~r~~A~~lL~~L~~ 695 (744)
+ ..+|+.-+||.|+.++..+-.
T Consensus 896 l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 896 LETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHccCCchhhHHHHHHHHHHHHh
Confidence 3 347788899999999876643
No 329
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=38.50 E-value=21 Score=31.69 Aligned_cols=27 Identities=19% Similarity=0.566 Sum_probs=23.5
Q ss_pred CCCccccHHHHHHHHccCCCCCCCCCCC
Q 004582 281 ASGKTFERVWIQKWFNAGHTTCPKTHMR 308 (744)
Q Consensus 281 ~~G~ty~r~~I~~w~~~~~~~cP~t~~~ 308 (744)
.|.|.|---||.+|+.. ...||.+++.
T Consensus 80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT-RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence 68899999999999986 5689999765
No 330
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=38.38 E-value=87 Score=29.52 Aligned_cols=71 Identities=15% Similarity=0.190 Sum_probs=55.4
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHhCCcHHHHHHHhhcC-CHH---HHHHHHHHHHHhhh
Q 004582 625 CIDSIAKLLETGTREEQEHIVDVLLSLCHEHT-KYCQLANTESIIQCVVDISVNG-NSR---GKETAKELIMLLDH 695 (744)
Q Consensus 625 ~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~-~~~~~v~~~G~i~~Lv~Ll~~~-s~~---~r~~A~~lL~~L~~ 695 (744)
++..|-.-|.+++|.++-.|+.+|-.+..+.+ .....+.....+..|+.++.+. +.. +++++..+|.....
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 46677778889999999999999999887764 4555666666889999987754 333 89999999877663
No 331
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=36.60 E-value=17 Score=37.38 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=29.6
Q ss_pred CCce-ecCCCccccHHHHHHHHccCCCCCCCCCCCCCCCCCccc
Q 004582 275 YDPV-VIASGKTFERVWIQKWFNAGHTTCPKTHMRLDNVSVTPN 317 (744)
Q Consensus 275 ~dPV-~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~~~l~pn 317 (744)
.||. +++|+|.||-.|...-. ...||.|++++.-..+.+|
T Consensus 15 ~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir~i~l~~s 55 (233)
T KOG4739|consen 15 QDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIRIIQLNRS 55 (233)
T ss_pred CCceeeeechhhhhhhhcccCC---ccccccccceeeeeecccc
Confidence 4554 45999999998854332 2389999999877777777
No 332
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=36.17 E-value=19 Score=40.66 Aligned_cols=170 Identities=12% Similarity=0.057 Sum_probs=86.4
Q ss_pred HHHHHHHHhccChhhhHHHH-hcCCchhhhcccccCCHHHHHHHHHHHHHhcCC----cch-HHHH--HhcCCcHhHHHH
Q 004582 522 EALEIIEVLSHQQNYASELV-ASGIIPSIIKFLDTGTRESRELAIKILCNLSSG----DNI-VYHI--LYLDCTSKLVRL 593 (744)
Q Consensus 522 ~A~~~L~~Ls~~~~~k~~I~-~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~----~~n-~~~i--v~aG~v~~Lv~l 593 (744)
.|..++..+..|+..+.... -..+...++..|.+..-..|+.|++++.|++.. -.+ +..- +..-.+..++..
T Consensus 410 aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~ 489 (728)
T KOG4535|consen 410 AASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRS 489 (728)
T ss_pred HHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHH
Confidence 34444444444444433222 233444455555555556777777777777531 111 1111 011112222222
Q ss_pred h--c---CccHHHHHHHHHHHhc-CHH-----HHHHHHhhCCcHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCHHHHHH
Q 004582 594 L--E---DPILSSYCIKIIKALC-TSE-----ARAAVAESNPCIDSIAKLL-ETGTREEQEHIVDVLLSLCHEHTKYCQL 661 (744)
Q Consensus 594 L--~---~~~l~~~al~~L~nLa-~~e-----~~~~i~~~~g~V~~Lv~lL-~~~s~~~~e~A~~~L~~Lc~~~~~~~~~ 661 (744)
- . ...+..++...|.|+. .-+ +-..+.+ |.+..+..-. -.+.-.+|=||+.++.||-++..-.-+.
T Consensus 490 A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~--~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~ 567 (728)
T KOG4535|consen 490 AIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIE--ESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQT 567 (728)
T ss_pred HHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHH--HHHHhcccceecccccccchHHHHHHHHhhcCccccccC
Confidence 1 1 1356778888888887 211 1122222 2222222211 1355678899999999998775421222
Q ss_pred HHhC-CcHHHHHHHhhcC-CHHHHHHHHHHHHHh
Q 004582 662 ANTE-SIIQCVVDISVNG-NSRGKETAKELIMLL 693 (744)
Q Consensus 662 v~~~-G~i~~Lv~Ll~~~-s~~~r~~A~~lL~~L 693 (744)
..=+ .+.+.|..|+.+. +-++|-.|+.+|..-
T Consensus 568 ~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp 601 (728)
T KOG4535|consen 568 APWASQAFNALTSLVTSCKNFKVRIRAAAALSVP 601 (728)
T ss_pred CCchHHHHHHHHHHHHHhccceEeehhhhhhcCC
Confidence 2222 3678888877654 568888888777544
No 333
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=35.95 E-value=1.4e+02 Score=28.33 Aligned_cols=72 Identities=14% Similarity=0.070 Sum_probs=56.5
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhc-chhhHHHhhCCChHHHHHHhcccc--cCCCHHHHHHHHHHHHHHhc
Q 004582 423 TSLSKLASRPWGSQCDAVENIKKLLKDN-GQSRHLAFLNSYVKPLIKFLKDAH--NLCDAKAQKDGAEVLLAILS 494 (744)
Q Consensus 423 ~ll~~L~s~~~e~q~~Al~~Lr~Lak~~-~~~r~~i~~~G~I~~LV~lL~~~~--~~~d~~~q~~A~~~L~nLs~ 494 (744)
.+..+|.+.++.++..|+..|..+++.. ..-+..+...+++..|++++.... ...+..++...+..+.....
T Consensus 42 ai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 42 LLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999854 455677888999999999996310 12578888888888777754
No 334
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=35.72 E-value=40 Score=40.20 Aligned_cols=48 Identities=8% Similarity=-0.128 Sum_probs=36.5
Q ss_pred CCCCCCccccccccccCCCceec----C---CCccccHHHHHHHHcc-----CCCCCCCC
Q 004582 258 VLEPPEEFKCSISLRLMYDPVVI----A---SGKTFERVWIQKWFNA-----GHTTCPKT 305 (744)
Q Consensus 258 ~~~~p~~f~CPI~~~~m~dPV~~----~---~G~ty~r~~I~~w~~~-----~~~~cP~t 305 (744)
....|+.-.|++|..-+.+||-- + +|+.+|-.||..|.+. .+.+|++|
T Consensus 90 DeK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC 149 (1134)
T KOG0825|consen 90 DEKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFC 149 (1134)
T ss_pred CcccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccH
Confidence 34556778899999999996632 3 8999999999999863 24556666
No 335
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.97 E-value=7.8 Score=40.68 Aligned_cols=38 Identities=21% Similarity=0.349 Sum_probs=29.6
Q ss_pred ccccccccccCCCceecCCCccc-cHHHHHHHHccCC--CCCCCCCCC
Q 004582 264 EFKCSISLRLMYDPVVIASGKTF-ERVWIQKWFNAGH--TTCPKTHMR 308 (744)
Q Consensus 264 ~f~CPI~~~~m~dPV~~~~G~ty-~r~~I~~w~~~~~--~~cP~t~~~ 308 (744)
+.+|-||++.-+|=|.++|||-. |-.| |. ..||+|++.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~C-------Gkrm~eCPICRqy 340 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKC-------GKRMNECPICRQY 340 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhh-------ccccccCchHHHH
Confidence 78999999999999999999953 3333 32 368888764
No 336
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=34.94 E-value=40 Score=32.61 Aligned_cols=46 Identities=13% Similarity=0.212 Sum_probs=31.9
Q ss_pred ccccccccccCCCceecCCCc-----cccHHHHHHHHcc-CCCCCCCCCCCCC
Q 004582 264 EFKCSISLRLMYDPVVIASGK-----TFERVWIQKWFNA-GHTTCPKTHMRLD 310 (744)
Q Consensus 264 ~f~CPI~~~~m~dPV~~~~G~-----ty~r~~I~~w~~~-~~~~cP~t~~~l~ 310 (744)
+-.|=||.+--. +..-||.. .--++|+++|++. +...||.|++++.
T Consensus 8 ~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 8 DKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 345777776533 34455543 2368999999975 5778999998875
No 337
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.87 E-value=27 Score=38.99 Aligned_cols=41 Identities=17% Similarity=0.365 Sum_probs=28.6
Q ss_pred cccccccc-ccCCCc---eecCCCccccHHHHHHHHcc-----CCCCCCC
Q 004582 264 EFKCSISL-RLMYDP---VVIASGKTFERVWIQKWFNA-----GHTTCPK 304 (744)
Q Consensus 264 ~f~CPI~~-~~m~dP---V~~~~G~ty~r~~I~~w~~~-----~~~~cP~ 304 (744)
...|+||. +.+... -+..|||-||..|+.+++.. ....||.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~ 195 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPH 195 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCC
Confidence 46799998 332221 15679999999999999862 2356776
No 338
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=34.47 E-value=21 Score=24.93 Aligned_cols=11 Identities=18% Similarity=0.299 Sum_probs=8.2
Q ss_pred CCCCCCCCCCC
Q 004582 298 GHTTCPKTHMR 308 (744)
Q Consensus 298 ~~~~cP~t~~~ 308 (744)
....||.|+.+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 45689999874
No 339
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=34.47 E-value=32 Score=36.49 Aligned_cols=43 Identities=26% Similarity=0.470 Sum_probs=33.3
Q ss_pred cccccccccc----CCCceecCCCccccHHHHHHHHccCCCCCCCCCC
Q 004582 264 EFKCSISLRL----MYDPVVIASGKTFERVWIQKWFNAGHTTCPKTHM 307 (744)
Q Consensus 264 ~f~CPI~~~~----m~dPV~~~~G~ty~r~~I~~w~~~~~~~cP~t~~ 307 (744)
++.|||+.+- +.+|...+|||+--..|.++....+ -+||.|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 4569999765 4678888999998766666666666 89999955
No 340
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=34.44 E-value=4.2e+02 Score=30.32 Aligned_cols=140 Identities=15% Similarity=0.167 Sum_probs=81.0
Q ss_pred chhhhccccc-CCHHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcC--ccHHHHHHH-HHHHhc--CHHHHHHH
Q 004582 546 IPSIIKFLDT-GTRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLED--PILSSYCIK-IIKALC--TSEARAAV 619 (744)
Q Consensus 546 Ip~Lv~lL~s-~~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~--~~l~~~al~-~L~nLa--~~e~~~~i 619 (744)
+..++++|.. .+...|+.|+..|..++.+...+-.=-..=+|..+++.-.+ +.+...|.. ++..++ .|..
T Consensus 331 L~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~---- 406 (516)
T KOG2956|consen 331 LLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ---- 406 (516)
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh----
Confidence 4567888877 66779999999999988876532221222445555555444 233333332 233444 2322
Q ss_pred HhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 004582 620 AESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLD 694 (744)
Q Consensus 620 ~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~ 694 (744)
+|..+..++-+.+...--.++..+..|+..=....-.-.-..+.|.+++--.+.+..+|+.|+-.|=.+.
T Consensus 407 -----~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 407 -----CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred -----HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 2334444444444333344555566666432221122233458899999999999999999998775554
No 341
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=34.25 E-value=1.5e+02 Score=28.35 Aligned_cols=71 Identities=13% Similarity=0.151 Sum_probs=58.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcch-hhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCC
Q 004582 423 TSLSKLASRPWGSQCDAVENIKKLLKDNGQ-SRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQS 496 (744)
Q Consensus 423 ~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~-~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~ 496 (744)
.+..+|.+.++.++..|+..|..+++.... -...+...+++..|++++... .++.++...+..+...+..-
T Consensus 41 al~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~---~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 41 AIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR---VHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc---CCHHHHHHHHHHHHHHHHHh
Confidence 355778899999999999999999987554 455788889999999999873 68899999988888886533
No 342
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=34.22 E-value=1e+02 Score=30.69 Aligned_cols=65 Identities=12% Similarity=0.147 Sum_probs=50.2
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCC-cHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 004582 625 CIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTES-IIQCVVDISVNGNSRGKETAKELIMLLDH 695 (744)
Q Consensus 625 ~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G-~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~~ 695 (744)
.++.++++.-+.+..++..|+.++..+-..+- .+.. .+|.|+.|..+.++.++..|..++..+.+
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGL------vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGL------VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCC------CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 46777777778888889888888776643321 1112 68999999999999999999999988864
No 343
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=34.11 E-value=56 Score=31.58 Aligned_cols=94 Identities=15% Similarity=0.218 Sum_probs=66.3
Q ss_pred ccCCHHHHHHHHHHHHHhcCC-cchHHHHH-hcCCcHhHHHHhc--C--ccHHHHHHHHHHHhc-CHHHHHHHHhhCCcH
Q 004582 554 DTGTRESRELAIKILCNLSSG-DNIVYHIL-YLDCTSKLVRLLE--D--PILSSYCIKIIKALC-TSEARAAVAESNPCI 626 (744)
Q Consensus 554 ~s~~~~~k~~A~~aL~nLs~~-~~n~~~iv-~aG~v~~Lv~lL~--~--~~l~~~al~~L~nLa-~~e~~~~i~~~~g~V 626 (744)
..+..+....+..+|..|--. ++....+. ..|.++.++.++. . ..+...++.+|..-| +...|..|.+ .++
T Consensus 53 ~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~--~~~ 130 (157)
T PF11701_consen 53 DEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK--NYV 130 (157)
T ss_dssp CCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH--HCH
T ss_pred ccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH--HHH
Confidence 334444666777777776544 45566664 6799999999886 2 356778888888888 8899998888 458
Q ss_pred HHHHHHHcCC-CHH-HHHHHHHHHH
Q 004582 627 DSIAKLLETG-TRE-EQEHIVDVLL 649 (744)
Q Consensus 627 ~~Lv~lL~~~-s~~-~~e~A~~~L~ 649 (744)
+.|-+++..+ +.. +|..|+-+|.
T Consensus 131 ~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 131 SWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHHHHHccccchHHHHHHHHHHHh
Confidence 9999999654 444 5777666554
No 344
>PRK14707 hypothetical protein; Provisional
Probab=34.03 E-value=9.6e+02 Score=33.01 Aligned_cols=249 Identities=12% Similarity=0.052 Sum_probs=127.3
Q ss_pred CHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcccccccchHHH
Q 004582 432 PWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPLFHKDEICTF 511 (744)
Q Consensus 432 ~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~iv~~Gai~~L 511 (744)
+.+.+..+......++.+ +..+..+ ..-+|..+++-++.=. +++..+..+..+-..++..++-+.. ++.-.|-..
T Consensus 178 ~~~c~~aa~~la~~~~~~-d~~~~~~-~~q~ia~~lNa~sKWp--~~~~c~~aa~~la~~l~~~~~l~~~-~~~q~va~~ 252 (2710)
T PRK14707 178 NPDCQAVAPRFAALVASD-DRLRSAM-DAQGVATVLNALCKWP--DTPDCGNAVSALAERLADESRLRNE-LKPQELGNA 252 (2710)
T ss_pred CchHHHHHHHHHHHhcCC-hhhhccc-chHHHHHHHHHHhcCC--CChhHHHHHHHHHHHHcCcHHHHHh-CChHHHHHH
Confidence 445555555544555544 3444444 3445566666555321 3455555444444445554433333 343333333
Q ss_pred HHhh----cchhHHHHHHHH-HHhccChhhhHHHHhcCCchhhhccc-ccCCHH-HHHHHHHHHHHhcCCcchHHHHHhc
Q 004582 512 ALFL----DSEIMEEALEII-EVLSHQQNYASELVASGIIPSIIKFL-DTGTRE-SRELAIKILCNLSSGDNIVYHILYL 584 (744)
Q Consensus 512 v~lL----~s~~~e~A~~~L-~~Ls~~~~~k~~I~~~G~Ip~Lv~lL-~s~~~~-~k~~A~~aL~nLs~~~~n~~~iv~a 584 (744)
+.-| +...+..|+..| ..|+.+..-+..+-. -.+.-.++-| +-.+.. ++..|...-..|..+++-+..+ ..
T Consensus 253 lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~-q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~ 330 (2710)
T PRK14707 253 LNALSKWADTPVCAAAASALAERLVDDPGLRKALDP-INVTQALNALSKWADLPVCAEAAIALAERLADDPELCKAL-NA 330 (2710)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCH-HHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhcc-ch
Confidence 3333 344556666555 445544444444422 2222233333 334444 4444444444566655544333 33
Q ss_pred CCcHhHHHHhc---Cc-cHHHHHHHHHHHhc-CHHHHHHHHhhCCcHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCHH
Q 004582 585 DCTSKLVRLLE---DP-ILSSYCIKIIKALC-TSEARAAVAESNPCIDSIAKLLET--GTREEQEHIVDVLLSLCHEHTK 657 (744)
Q Consensus 585 G~v~~Lv~lL~---~~-~l~~~al~~L~nLa-~~e~~~~i~~~~g~V~~Lv~lL~~--~s~~~~e~A~~~L~~Lc~~~~~ 657 (744)
-.+...+.-|+ +. .....|..+-..|+ .++-+..+-. .+|...+.-|+. +++..+. |+..|..=-.++.+
T Consensus 331 ~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~--q~~a~~lNalsKWp~~~~c~~-aa~~LA~~l~~d~~ 407 (2710)
T PRK14707 331 RGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEP--QGVSSVLNALSKWPDTPVCAA-AASALAEHVVDDLE 407 (2710)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccch--hHHHHHHhhhhcCCCchHHHH-HHHHHHHHhccChh
Confidence 33444445553 22 33444444445677 8888887754 347777777765 3444444 44444433346667
Q ss_pred HHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHH
Q 004582 658 YCQLANTESIIQCVVDISVNGNSRGKETAKELI 690 (744)
Q Consensus 658 ~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL 690 (744)
..+.+-..|+-..|-.+.+=....+-..|+..|
T Consensus 408 l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~l 440 (2710)
T PRK14707 408 LRKGLDPQGVSNALNALAKWPDLPICGQAVSAL 440 (2710)
T ss_pred hhhhcchhhHHHHHHHhhcCCcchhHHHHHHHH
Confidence 777777777777777777766666666666555
No 345
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.99 E-value=19 Score=40.58 Aligned_cols=70 Identities=19% Similarity=0.327 Sum_probs=52.9
Q ss_pred CCCCCCccccccc-cccCCCceec--CCCccccHHHHHHHHcc-CCCCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q 004582 258 VLEPPEEFKCSIS-LRLMYDPVVI--ASGKTFERVWIQKWFNA-GHTTCPKTHMRLDNVSVTPNVAIKELISQWCL 329 (744)
Q Consensus 258 ~~~~p~~f~CPI~-~~~m~dPV~~--~~G~ty~r~~I~~w~~~-~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~ 329 (744)
....|++..||+| .+.|.|-+++ .|+.+||-.||+..+-. +-..|+.|.. ..-.+.|+..+|..+..--.
T Consensus 213 v~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~~~~~c~~~~~--~~~~~~~p~~~r~~~n~~~a 286 (448)
T KOG0314|consen 213 VGELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISKSMCVCGASNV--LADDLLPPKTLRDTINRILA 286 (448)
T ss_pred hccCCccccCceecchhhHHHHHhhhhhcccCCccccccccccccCCcchhhcc--cccccCCchhhHHHHHHHHh
Confidence 3568999999999 9999999998 79999999999998754 3344555533 23467777778777766533
No 346
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.89 E-value=28 Score=31.24 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=18.1
Q ss_pred cccccccc----cCCCceecC-CCccccHHHHH
Q 004582 265 FKCSISLR----LMYDPVVIA-SGKTFERVWIQ 292 (744)
Q Consensus 265 f~CPI~~~----~m~dPV~~~-~G~ty~r~~I~ 292 (744)
-+||-|+. +=+||++.| ||.+|-|+..+
T Consensus 10 ridPetg~KFYDLNrdPiVsPytG~s~P~s~fe 42 (129)
T COG4530 10 RIDPETGKKFYDLNRDPIVSPYTGKSYPRSYFE 42 (129)
T ss_pred ccCccccchhhccCCCccccCcccccchHHHHH
Confidence 45676654 446787775 77888776544
No 347
>PHA02862 5L protein; Provisional
Probab=33.87 E-value=29 Score=32.94 Aligned_cols=25 Identities=16% Similarity=0.371 Sum_probs=20.6
Q ss_pred ccHHHHHHHHcc-CCCCCCCCCCCCC
Q 004582 286 FERVWIQKWFNA-GHTTCPKTHMRLD 310 (744)
Q Consensus 286 y~r~~I~~w~~~-~~~~cP~t~~~l~ 310 (744)
--++|+++|+.. +..+||.|+.++.
T Consensus 28 VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 28 VHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred HHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 457899999974 5678999999875
No 348
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=33.84 E-value=5.9e+02 Score=26.87 Aligned_cols=144 Identities=10% Similarity=0.137 Sum_probs=81.2
Q ss_pred HHHHHHHHHhccChh--------hhHHHHhcCCchhhhcccccCC----HHHHHHHHHHHHHhcCCcchHHHHHhcCCcH
Q 004582 521 EEALEIIEVLSHQQN--------YASELVASGIIPSIIKFLDTGT----RESRELAIKILCNLSSGDNIVYHILYLDCTS 588 (744)
Q Consensus 521 e~A~~~L~~Ls~~~~--------~k~~I~~~G~Ip~Lv~lL~s~~----~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~ 588 (744)
+.++.+|..|+...+ +|-.+.-.+.+|.+++-+.+++ ......++..|..++.... .+.+.
T Consensus 80 e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~-------~~~La 152 (262)
T PF14225_consen 80 ELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG-------LPNLA 152 (262)
T ss_pred HHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC-------CccHH
Confidence 455555555544422 2322323456777777777766 1334456677777773221 12333
Q ss_pred hHHHHhcCc------cHHHHHHHHHHHhcCHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Q 004582 589 KLVRLLEDP------ILSSYCIKIIKALCTSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLA 662 (744)
Q Consensus 589 ~Lv~lL~~~------~l~~~al~~L~nLa~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v 662 (744)
.++.....+ +....++..|+.-..|+.- ...+.-|+++|.++.+..|...+.+|..+-..-.-...
T Consensus 153 ~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~~------~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-- 224 (262)
T PF14225_consen 153 RILSSYAKGRFRDKDDFLSQVVSYLREAFFPDHE------FQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-- 224 (262)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchhH------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--
Confidence 333333222 3455555555543322221 13466789999999999999999999988654322111
Q ss_pred HhCCcHHHHHHHhhcCC
Q 004582 663 NTESIIQCVVDISVNGN 679 (744)
Q Consensus 663 ~~~G~i~~Lv~Ll~~~s 679 (744)
.....+.+|.+++++.-
T Consensus 225 ~~~dlispllrlL~t~~ 241 (262)
T PF14225_consen 225 HGADLISPLLRLLQTDL 241 (262)
T ss_pred cchHHHHHHHHHhCCcc
Confidence 33447889999887653
No 349
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=33.47 E-value=20 Score=34.31 Aligned_cols=33 Identities=30% Similarity=0.704 Sum_probs=22.1
Q ss_pred CCCccccHHHHHHHHcc----------CCCCCCCCCCCC-CCCCCcccH
Q 004582 281 ASGKTFERVWIQKWFNA----------GHTTCPKTHMRL-DNVSVTPNV 318 (744)
Q Consensus 281 ~~G~ty~r~~I~~w~~~----------~~~~cP~t~~~l-~~~~l~pn~ 318 (744)
.+||+||- ||.. |.-+||+||..- ...-.-|++
T Consensus 9 ~~gH~FEg-----WF~ss~~fd~Q~~~glv~CP~Cgs~~V~K~lmAP~v 52 (148)
T PF06676_consen 9 ENGHEFEG-----WFRSSAAFDRQQARGLVSCPVCGSTEVSKALMAPAV 52 (148)
T ss_pred CCCCccce-----ecCCHHHHHHHHHcCCccCCCCCCCeEeeecCCCee
Confidence 57899974 8753 567899998653 333445653
No 350
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=33.15 E-value=6.6 Score=32.53 Aligned_cols=41 Identities=15% Similarity=0.250 Sum_probs=21.9
Q ss_pred ccccccccccCCCceecCCCccccHHHHHHHHccCCCCCCCCCCCCC
Q 004582 264 EFKCSISLRLMYDPVVIASGKTFERVWIQKWFNAGHTTCPKTHMRLD 310 (744)
Q Consensus 264 ~f~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~ 310 (744)
+..||.|... +.-..|+.+|-.|-..+.. ...||.|+++|.
T Consensus 1 e~~CP~C~~~----L~~~~~~~~C~~C~~~~~~--~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQE----LEWQGGHYHCEACQKDYKK--EAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SB----EEEETTEEEETTT--EEEE--EEE-TTT-SB-E
T ss_pred CCcCCCCCCc----cEEeCCEEECcccccccee--cccCCCcccHHH
Confidence 4579999875 3444578888887554432 357999998874
No 351
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=33.11 E-value=42 Score=36.15 Aligned_cols=60 Identities=12% Similarity=0.253 Sum_probs=44.7
Q ss_pred CCCccccccccccCCCceec-CCCccccHHHHHHHHccCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 004582 261 PPEEFKCSISLRLMYDPVVI-ASGKTFERVWIQKWFNAGHTTCPKTHMRLDNVSVTPNVAIKELISQW 327 (744)
Q Consensus 261 ~p~~f~CPI~~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~ 327 (744)
..+-|-||+|.+-|.-|+.= ..||.-|-+|=. +-...||.|+.++.+ +-++++-+.++.-
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~----~~~~~CP~Cr~~~g~---~R~~amEkV~e~~ 105 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRT----KVSNKCPTCRLPIGN---IRCRAMEKVAEAV 105 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhh----hhcccCCcccccccc---HHHHHHHHHHHhc
Confidence 34558999999999999775 579999988843 235679999998874 3556666666543
No 352
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=33.09 E-value=89 Score=36.58 Aligned_cols=61 Identities=13% Similarity=0.248 Sum_probs=38.3
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHH
Q 004582 625 CIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELI 690 (744)
Q Consensus 625 ~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL 690 (744)
++..+++|.+..+..+|..|+..|..+|...++...- ++..|++|+.+.++.-....-..|
T Consensus 60 Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-----vaDvL~QlL~tdd~~E~~~v~~sL 120 (556)
T PF05918_consen 60 AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-----VADVLVQLLQTDDPVELDAVKNSL 120 (556)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH-----HHHHHHHHTT---HHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH-----HHHHHHHHHhcccHHHHHHHHHHH
Confidence 4567778888888899999999999999887654443 357888898887765555555444
No 353
>PF07278 DUF1441: Protein of unknown function (DUF1441); InterPro: IPR009901 This entry is represented by Bacteriophage VT1-Sakai, H0025. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown.
Probab=32.99 E-value=1.8e+02 Score=28.13 Aligned_cols=46 Identities=20% Similarity=0.386 Sum_probs=36.7
Q ss_pred ehhhhhHHHHHHHHHHHHHHHHHHhhhhhch------HhHHHHHHHHHHHHh
Q 004582 80 LAITADRIQMKFERVRNTLELCLSQIQNIVP------SLLAAKVSDIIHDIR 125 (744)
Q Consensus 80 l~~~~~~i~~~~~~~~~~l~~~L~~i~~~~~------~~l~~~v~~~~~~l~ 125 (744)
-++..+.|...|..+.+.+.+.|..+|+.+. .+-...|..+++++|
T Consensus 88 ~Lipa~eV~~~~s~~~Kav~q~LetlPD~LERd~gL~p~~v~~vQ~~iD~lR 139 (152)
T PF07278_consen 88 QLIPAEEVRREMSEMAKAVVQVLETLPDILERDAGLPPEQVARVQSVIDDLR 139 (152)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999998643 344456677777777
No 354
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.87 E-value=27 Score=37.97 Aligned_cols=45 Identities=18% Similarity=0.272 Sum_probs=35.8
Q ss_pred cccccccccCCCceecCCCcc-ccHHHHHHHHccCCCCCCCCCCCCC
Q 004582 265 FKCSISLRLMYDPVVIASGKT-FERVWIQKWFNAGHTTCPKTHMRLD 310 (744)
Q Consensus 265 f~CPI~~~~m~dPV~~~~G~t-y~r~~I~~w~~~~~~~cP~t~~~l~ 310 (744)
-.|=||+.=-+|=|++||-|. -|..|-+.- +-.+..||+|++++.
T Consensus 291 keCVIClse~rdt~vLPCRHLCLCs~Ca~~L-r~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 291 KECVICLSESRDTVVLPCRHLCLCSGCAKSL-RYQTNNCPICRQPIE 336 (349)
T ss_pred CeeEEEecCCcceEEecchhhehhHhHHHHH-HHhhcCCCccccchH
Confidence 569999999999999999986 577775543 333567999999874
No 355
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=32.48 E-value=28 Score=31.42 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=15.6
Q ss_pred CceecC--CCccccHHHHHHHHc
Q 004582 276 DPVVIA--SGKTFERVWIQKWFN 296 (744)
Q Consensus 276 dPV~~~--~G~ty~r~~I~~w~~ 296 (744)
.||.++ ---|.||.|+++|-.
T Consensus 64 HPVFiAQHATatCCRgCL~KWH~ 86 (111)
T PF13811_consen 64 HPVFIAQHATATCCRGCLEKWHG 86 (111)
T ss_pred CCeeeecCCCccchHHHHHHHhC
Confidence 577773 123889999999964
No 356
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.20 E-value=26 Score=42.23 Aligned_cols=40 Identities=23% Similarity=0.368 Sum_probs=33.9
Q ss_pred ccccccccccCCCceec-CCCccccHHHHHHHHccCCCCCCCCCC
Q 004582 264 EFKCSISLRLMYDPVVI-ASGKTFERVWIQKWFNAGHTTCPKTHM 307 (744)
Q Consensus 264 ~f~CPI~~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~cP~t~~ 307 (744)
.-.|..|.-.+.=|++- -|||.|-+.|.+ .+...||.|.-
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 35788888888889885 999999999988 56788999954
No 357
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=32.13 E-value=64 Score=31.45 Aligned_cols=67 Identities=18% Similarity=0.209 Sum_probs=42.4
Q ss_pred CchhhhcccccCCH-HHHHHHHHHHHHhcCC----cchHHHHHh---cCCcHhHHHHhcCccHHHHHHHHHHHhc
Q 004582 545 IIPSIIKFLDTGTR-ESRELAIKILCNLSSG----DNIVYHILY---LDCTSKLVRLLEDPILSSYCIKIIKALC 611 (744)
Q Consensus 545 ~Ip~Lv~lL~s~~~-~~k~~A~~aL~nLs~~----~~n~~~iv~---aG~v~~Lv~lL~~~~l~~~al~~L~nLa 611 (744)
-+..|+.+|+..++ .+++.|+.+|..|... ++-.+++.- .+.++.++.++.++...+.++.+|..|-
T Consensus 68 W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 68 WLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLL 142 (165)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 67778888877544 5788888887776543 333333322 1455556666655566777777777665
No 358
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.59 E-value=8.6e+02 Score=28.10 Aligned_cols=151 Identities=13% Similarity=0.101 Sum_probs=82.1
Q ss_pred hCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcccccccchHHHHHhh----cchhHHHHHHHHHHhccCh
Q 004582 459 LNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPLFHKDEICTFALFL----DSEIMEEALEIIEVLSHQQ 534 (744)
Q Consensus 459 ~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~iv~~Gai~~Lv~lL----~s~~~e~A~~~L~~Ls~~~ 534 (744)
+.|.+..++..|......++...+..|+..|.|..+.-..+..-...-.+..++.-| +.++.-.|..+|..+...-
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 456677666666432223677888999999999988744433322233444444444 3344444555554333222
Q ss_pred hhhHHHHhcCCch---hhhcccccCCHHHHHHHHHHHHHhcCCcchHHHH--Hh--cCCcHhHHHHhcCccH-HHHHHHH
Q 004582 535 NYASELVASGIIP---SIIKFLDTGTRESRELAIKILCNLSSGDNIVYHI--LY--LDCTSKLVRLLEDPIL-SSYCIKI 606 (744)
Q Consensus 535 ~~k~~I~~~G~Ip---~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~i--v~--aG~v~~Lv~lL~~~~l-~~~al~~ 606 (744)
.++.. ..+.++ .+..+..+.+++.+.+|..+...|+....-..++ .+ .|...+++-.|.++.. ...|+..
T Consensus 332 ~~~~l--~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~ 409 (533)
T KOG2032|consen 332 SNDDL--ESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRS 409 (533)
T ss_pred hhcch--hhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHH
Confidence 22111 233333 3455677888999999988877777654433333 32 2444455555666543 3344444
Q ss_pred HHHhc
Q 004582 607 IKALC 611 (744)
Q Consensus 607 L~nLa 611 (744)
....+
T Consensus 410 ~~~~c 414 (533)
T KOG2032|consen 410 ELRTC 414 (533)
T ss_pred HHHhc
Confidence 44443
No 359
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=31.48 E-value=40 Score=28.48 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=21.9
Q ss_pred cccccccc-----CCCceec--CCCccccHHHHHHHHccCCCCCCCCCCCCCC
Q 004582 266 KCSISLRL-----MYDPVVI--ASGKTFERVWIQKWFNAGHTTCPKTHMRLDN 311 (744)
Q Consensus 266 ~CPI~~~~-----m~dPV~~--~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~ 311 (744)
.|.||++= =-+|.+. .||.-.||.|.+-=.++|+..||.|+.++..
T Consensus 11 iCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 11 ICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred ccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 57777542 2344444 5788889999998888999999999977654
No 360
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=31.27 E-value=5.4e+02 Score=31.10 Aligned_cols=66 Identities=15% Similarity=0.127 Sum_probs=47.5
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhc
Q 004582 424 SLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILS 494 (744)
Q Consensus 424 ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~ 494 (744)
+++...+.+..+|.+.+..|..+...+.+ +..-+-.+..+.+..=|.+ ..+.++..|+.+|..+=.
T Consensus 90 lLRg~Eskdk~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~D----rep~VRiqAv~aLsrlQ~ 155 (892)
T KOG2025|consen 90 LLRGTESKDKKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLKD----REPNVRIQAVLALSRLQG 155 (892)
T ss_pred HHhcccCcchhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhc----cCchHHHHHHHHHHHHhc
Confidence 45556677889999999999999874333 3334445666666666655 468899999999988853
No 361
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=31.23 E-value=1.4e+02 Score=28.16 Aligned_cols=68 Identities=15% Similarity=0.107 Sum_probs=54.2
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhhc-chhhHHHhhCCChHHHHHHhcccccCCCHH---HHHHHHHHHHHHhc
Q 004582 424 SLSKLASRPWGSQCDAVENIKKLLKDN-GQSRHLAFLNSYVKPLIKFLKDAHNLCDAK---AQKDGAEVLLAILS 494 (744)
Q Consensus 424 ll~~L~s~~~e~q~~Al~~Lr~Lak~~-~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~---~q~~A~~~L~nLs~ 494 (744)
+-.+|.++++.+|..|+..|-.+++.. +.-+..+....++..|++++.+. .... +++.++..|.....
T Consensus 47 l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~---~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 47 LRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSK---KTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHT---TTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccC---CCCchhHHHHHHHHHHHHHHH
Confidence 457789999999999999999999875 45667788888999999998763 2333 78888888777754
No 362
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=30.98 E-value=9.4e+02 Score=28.35 Aligned_cols=76 Identities=11% Similarity=0.008 Sum_probs=38.7
Q ss_pred hHHhHHHHHHHHHHHHhhhhhHHhhCCCCCcchhhhhhHHHHHHHHHHHHHHhhccCeeeehhhhh----HHHHHHHHHH
Q 004582 20 HRLMCLELKTLINKISHIHSDIESARPGCTSGIHVLCSFHVAVDKSKLLIQYCSESSKLYLAITAD----RIQMKFERVR 95 (744)
Q Consensus 20 ~~~~c~~l~~~~~ri~~l~~~lee~r~~~~~~~~~l~~L~~~l~~ak~Ll~~c~~~Sklyl~~~~~----~i~~~~~~~~ 95 (744)
|+..-++.....+++.-=+-.|+++.|. +.-...|..-+.-|..+..|.+.|.+. |-++.++ .+...+....
T Consensus 176 ~~~~~~e~~~~~d~L~fq~~Ele~~~l~-~gE~e~L~~e~~rLsn~ekl~~~~~~a---~~~L~ge~~~~~~~~~l~~a~ 251 (557)
T COG0497 176 LQEKERERAQRADLLQFQLEELEELNLQ-PGEDEELEEERKRLSNSEKLAEAIQNA---LELLSGEDDTVSALSLLGRAL 251 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHhhHHHHHHHHHHH---HHHHhCCCCchhHHHHHHHHH
Confidence 4444445434444444443333333332 234666666777777777777776433 4555443 3555555544
Q ss_pred HHHH
Q 004582 96 NTLE 99 (744)
Q Consensus 96 ~~l~ 99 (744)
..|.
T Consensus 252 ~~l~ 255 (557)
T COG0497 252 EALE 255 (557)
T ss_pred HHHH
Confidence 4443
No 363
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=30.27 E-value=1.3e+02 Score=27.05 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhhhhchHhHHHHHHHHHHHHh
Q 004582 93 RVRNTLELCLSQIQNIVPSLLAAKVSDIIHDIR 125 (744)
Q Consensus 93 ~~~~~l~~~L~~i~~~~~~~l~~~v~~~~~~l~ 125 (744)
.|-.+|+|+.|.+-..+.-.+++||+-+..|.+
T Consensus 45 aIDNKIeQAMDLVKtHLmfAVREEVe~Lk~qI~ 77 (123)
T KOG4797|consen 45 AIDNKIEQAMDLVKTHLMFAVREEVEVLKEQIR 77 (123)
T ss_pred eechHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999988876777789999998888887
No 364
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=30.16 E-value=7e+02 Score=26.56 Aligned_cols=162 Identities=13% Similarity=0.043 Sum_probs=91.1
Q ss_pred HHH-HhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCC-CC-
Q 004582 423 TSL-SKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSR-DE- 499 (744)
Q Consensus 423 ~ll-~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~-nk- 499 (744)
.++ ..+.+.+..+|..|+..|...+--+.+ ++. ..++.+...+.. ++..++..|+.++..+..... ..
T Consensus 30 ~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~----~a~-~~l~l~~~~~~~----~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 30 SLILPAVQSSDPAVRELALKCLGLCCLLDKE----LAK-EHLPLFLQALQK----DDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhChH----HHH-HHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHHcCchhc
Confidence 444 667788999999999999988754432 111 246677777755 689999999999999865211 11
Q ss_pred -------cccccccchHHHHHhhcchhH---HHHHHHHHHhccChhhhHHHHhcCCchhhhccccc----CCHHHHHHHH
Q 004582 500 -------MPLFHKDEICTFALFLDSEIM---EEALEIIEVLSHQQNYASELVASGIIPSIIKFLDT----GTRESRELAI 565 (744)
Q Consensus 500 -------~~iv~~Gai~~Lv~lL~s~~~---e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s----~~~~~k~~A~ 565 (744)
........+..+.+.|++... ..|+..+.-|-....... ....+..|+-+.-+ .+...+..-.
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 111223566677777766542 233333322222111110 01222233333322 2334444334
Q ss_pred HHHHHhcCCcchHHHHHhcCCcHhHHHHhcC
Q 004582 566 KILCNLSSGDNIVYHILYLDCTSKLVRLLED 596 (744)
Q Consensus 566 ~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~ 596 (744)
..+-..+.........+..+.+|.+-.+...
T Consensus 178 ~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 178 VFFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 4444556555555666777888888777743
No 365
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=30.14 E-value=2.4e+02 Score=27.31 Aligned_cols=140 Identities=9% Similarity=0.138 Sum_probs=76.3
Q ss_pred CchhhhcccccC-CHHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcCccHHHHHHHHHHHhcCHHHHHHHHhhC
Q 004582 545 IIPSIIKFLDTG-TRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLEDPILSSYCIKIIKALCTSEARAAVAESN 623 (744)
Q Consensus 545 ~Ip~Lv~lL~s~-~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~~l~~~al~~L~nLa~~e~~~~i~~~~ 623 (744)
.++.|+++|+++ +..+|..++++|..|-.-+..+-+.+..+.= .-...-.........+ ...+. .+.+- +..- .
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~-~~~~~~~~~~~~~~~l-~~~~~-~~~~e-e~y~-~ 85 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD-SKSSENSNDESTDISL-PMMGI-SPSSE-EYYP-T 85 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC-ccccccccccchhhHH-hhccC-CCchH-HHHH-H
Confidence 456677788776 4679999999999998777766664332111 0000000011112111 11112 11111 1112 1
Q ss_pred CcHHHHHHHHcCCCH-HHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHH
Q 004582 624 PCIDSIAKLLETGTR-EEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELI 690 (744)
Q Consensus 624 g~V~~Lv~lL~~~s~-~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL 690 (744)
.++..|+.+|+..+- .-...++.++..+....+..+ .-.=.-++|.++..+.+.++..++.--.-|
T Consensus 86 vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL 152 (160)
T PF11865_consen 86 VVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQL 152 (160)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHH
Confidence 457888888876543 334467777777764332222 222344799999999988887777644433
No 366
>PLN02400 cellulose synthase
Probab=29.83 E-value=29 Score=43.24 Aligned_cols=46 Identities=20% Similarity=0.170 Sum_probs=36.9
Q ss_pred cccccccc-----cCCCceec--CCCccccHHHHHHHHccCCCCCCCCCCCCC
Q 004582 265 FKCSISLR-----LMYDPVVI--ASGKTFERVWIQKWFNAGHTTCPKTHMRLD 310 (744)
Q Consensus 265 f~CPI~~~-----~m~dPV~~--~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~ 310 (744)
=.|.||++ ..-||.+. .||.-.||.|.|-=-++|+..||.|+.++.
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 37999965 45567765 788999999996556689999999998876
No 367
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=29.77 E-value=8e+02 Score=29.74 Aligned_cols=112 Identities=13% Similarity=0.123 Sum_probs=64.8
Q ss_pred CChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCCCcccccccchHHHHH-hhcch--hHHHHHHHHHHhccChhhh
Q 004582 461 SYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPLFHKDEICTFAL-FLDSE--IMEEALEIIEVLSHQQNYA 537 (744)
Q Consensus 461 G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~nk~~iv~~Gai~~Lv~-lL~s~--~~e~A~~~L~~Ls~~~~~k 537 (744)
|.+..|++...+ .+..++...+.+|..++........-+-.+....+.. +.+.+ +.-.|+-+|..+-.++.+-
T Consensus 85 ~~f~hlLRg~Es----kdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 85 GTFYHLLRGTES----KDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred HHHHHHHhcccC----cchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 445555555544 7889999999988888774333332233333333333 33433 4467888887776433220
Q ss_pred HHHHhcCCchhhhccccc-CCHHHHHHHHHHHHHhcCCcchHHHHHh
Q 004582 538 SELVASGIIPSIIKFLDT-GTRESRELAIKILCNLSSGDNIVYHILY 583 (744)
Q Consensus 538 ~~I~~~G~Ip~Lv~lL~s-~~~~~k~~A~~aL~nLs~~~~n~~~iv~ 583 (744)
+..++..++.++++ +++++|..| |.|++.++...+.|++
T Consensus 161 ----e~~v~n~l~~liqnDpS~EVRRaa---LsnI~vdnsTlp~Ive 200 (892)
T KOG2025|consen 161 ----ECPVVNLLKDLIQNDPSDEVRRAA---LSNISVDNSTLPCIVE 200 (892)
T ss_pred ----cccHHHHHHHHHhcCCcHHHHHHH---HHhhccCcccchhHHH
Confidence 11234456666665 566888764 5677777766666653
No 368
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=29.22 E-value=4.6e+02 Score=28.54 Aligned_cols=191 Identities=15% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhh-hcchhhHHHhh--CCChHHHHHHhcccccCCCH---------HHHHHHHHHHHH
Q 004582 424 SLSKLASRPWGSQCDAVENIKKLLK-DNGQSRHLAFL--NSYVKPLIKFLKDAHNLCDA---------KAQKDGAEVLLA 491 (744)
Q Consensus 424 ll~~L~s~~~e~q~~Al~~Lr~Lak-~~~~~r~~i~~--~G~I~~LV~lL~~~~~~~d~---------~~q~~A~~~L~n 491 (744)
+-..|.+........++..|..++. ++......+.. .=-.+.+.+++......... .++.+.+..++.
T Consensus 61 lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Ls 140 (330)
T PF11707_consen 61 LYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLS 140 (330)
T ss_pred HHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHHHH
Q ss_pred HhcCCCC---CcccccccchHHHHHhhcchhHHHHHHHHHHhccC--------hhhhHHHHhcCCchhhhcccccCCH--
Q 004582 492 ILSQSRD---EMPLFHKDEICTFALFLDSEIMEEALEIIEVLSHQ--------QNYASELVASGIIPSIIKFLDTGTR-- 558 (744)
Q Consensus 492 Ls~~~~n---k~~iv~~Gai~~Lv~lL~s~~~e~A~~~L~~Ls~~--------~~~k~~I~~~G~Ip~Lv~lL~s~~~-- 558 (744)
+...... +..+...+.+..+..-|.....+....+|..|-.+ ...|..+.....+..|+.+-...+.
T Consensus 141 fl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~~~~ 220 (330)
T PF11707_consen 141 FLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDGEDE 220 (330)
T ss_pred HHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccCCcc
Q ss_pred --HHHHHHHHHHHHhcCCcchHHHHHhc------------------------CCcHhHHHHhcCccHHHHHHHHHHHhc-
Q 004582 559 --ESRELAIKILCNLSSGDNIVYHILYL------------------------DCTSKLVRLLEDPILSSYCIKIIKALC- 611 (744)
Q Consensus 559 --~~k~~A~~aL~nLs~~~~n~~~iv~a------------------------G~v~~Lv~lL~~~~l~~~al~~L~nLa- 611 (744)
.+.+.+-..|..++.++.+....-.. +.+-.++..|...+-....--++..+.
T Consensus 221 ~~~~~~~vh~fL~~lcT~p~~Gv~f~d~~~~~~~~~~~~~~~~~~~~~~~~Nk~L~~ll~~lkp~e~~~q~~Lvl~Il~~ 300 (330)
T PF11707_consen 221 KSSVADLVHEFLLALCTDPKHGVCFPDNGWYPRESDSGVPVTINNKSFKINNKLLLNLLKKLKPWEDDRQQELVLKILKA 300 (330)
T ss_pred cchHHHHHHHHHHHHhcCCCcccccCCCCcCcCcccccccccccCCCCCcccHHHHHHHHHCCCCccHHHHHHHHHHHHH
Q ss_pred CHH
Q 004582 612 TSE 614 (744)
Q Consensus 612 ~~e 614 (744)
+||
T Consensus 301 ~Pe 303 (330)
T PF11707_consen 301 CPE 303 (330)
T ss_pred ChH
No 369
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=29.11 E-value=37 Score=33.24 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=17.5
Q ss_pred ccccccccccCCCceecCCCccccHHHHHHHHccCCCCCCCCCCC
Q 004582 264 EFKCSISLRLMYDPVVIASGKTFERVWIQKWFNAGHTTCPKTHMR 308 (744)
Q Consensus 264 ~f~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~ 308 (744)
-+.||+|+-++.+. ....||.|+.|
T Consensus 134 ~~vC~vCGy~~~ge--------------------~P~~CPiCga~ 158 (166)
T COG1592 134 VWVCPVCGYTHEGE--------------------APEVCPICGAP 158 (166)
T ss_pred EEEcCCCCCcccCC--------------------CCCcCCCCCCh
Confidence 78899985544432 35679999876
No 370
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=28.81 E-value=42 Score=42.14 Aligned_cols=39 Identities=23% Similarity=0.476 Sum_probs=27.1
Q ss_pred CCCCcccccccc--ccCCCceecCCCccccHHHHHHHHccCCCCCCCCCCCCC
Q 004582 260 EPPEEFKCSISL--RLMYDPVVIASGKTFERVWIQKWFNAGHTTCPKTHMRLD 310 (744)
Q Consensus 260 ~~p~~f~CPI~~--~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~ 310 (744)
..|++++||=|+ +...|+ +.|-=||- -.++||+||.||.
T Consensus 910 PL~PHY~Cp~Cky~Ef~~d~---svgsGfDL---------pdK~CPkCg~pl~ 950 (1444)
T COG2176 910 PLPPHYLCPECKYSEFIDDG---SVGSGFDL---------PDKDCPKCGTPLK 950 (1444)
T ss_pred CCCccccCCCCceeeeecCC---CcCCCCCC---------CCCCCCcCCCccc
Confidence 468899999996 455555 22333433 4689999999985
No 371
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=28.61 E-value=40 Score=32.74 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=22.7
Q ss_pred CCccccccccccCCCceecCCCccccHHHHHHHHccCCCCCCCCCCCCCC
Q 004582 262 PEEFKCSISLRLMYDPVVIASGKTFERVWIQKWFNAGHTTCPKTHMRLDN 311 (744)
Q Consensus 262 p~~f~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~ 311 (744)
+..|.||-|.. .|.-.-- ++ ...+||.||.+|.+
T Consensus 107 ~~~Y~Cp~c~~------------r~tf~eA---~~-~~F~Cp~Cg~~L~~ 140 (158)
T TIGR00373 107 NMFFICPNMCV------------RFTFNEA---ME-LNFTCPRCGAMLDY 140 (158)
T ss_pred CCeEECCCCCc------------EeeHHHH---HH-cCCcCCCCCCEeee
Confidence 57899998763 4433222 22 36899999998865
No 372
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=28.33 E-value=18 Score=36.92 Aligned_cols=45 Identities=16% Similarity=0.420 Sum_probs=33.6
Q ss_pred Ccccccccc-ccCCCc--eec---CCCccccHHHHHHHHccCCCCCC--CCCC
Q 004582 263 EEFKCSISL-RLMYDP--VVI---ASGKTFERVWIQKWFNAGHTTCP--KTHM 307 (744)
Q Consensus 263 ~~f~CPI~~-~~m~dP--V~~---~~G~ty~r~~I~~w~~~~~~~cP--~t~~ 307 (744)
.|-.||+|. +..-.| +++ .|=|..|-+|+-+.|..|...|| -|+.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 356799995 333444 222 48899999999999999999999 4554
No 373
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=28.12 E-value=3.9e+02 Score=34.94 Aligned_cols=126 Identities=14% Similarity=0.214 Sum_probs=79.8
Q ss_pred HHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhcCCcchH--HHHHhcCCcHhHHHHhcCccH
Q 004582 522 EALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIV--YHILYLDCTSKLVRLLEDPIL 599 (744)
Q Consensus 522 ~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~--~~iv~aG~v~~Lv~lL~~~~l 599 (744)
.|..+...|+...+.-..+ .+.+..++.+|......+|..|+++|.++...+... ...|+.|+...+.+ ....+
T Consensus 796 ~a~li~~~la~~r~f~~sf--D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~D--ssasV 871 (1692)
T KOG1020|consen 796 DAKLIVFYLAHARSFSQSF--DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLND--SSASV 871 (1692)
T ss_pred hHHHHHHHHHhhhHHHHhh--HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhcc--chhHH
Confidence 4555555554432222111 346667788888888899999999999998776531 22245555444332 22467
Q ss_pred HHHHHHHHHHhc--CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH
Q 004582 600 SSYCIKIIKALC--TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTK 657 (744)
Q Consensus 600 ~~~al~~L~nLa--~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~ 657 (744)
++.|+..++... .++-.....+ .+.+-+..++..+|..++.+|.-+|-..+.
T Consensus 872 REAaldLvGrfvl~~~e~~~qyY~------~i~erIlDtgvsVRKRvIKIlrdic~e~pd 925 (1692)
T KOG1020|consen 872 REAALDLVGRFVLSIPELIFQYYD------QIIERILDTGVSVRKRVIKILRDICEETPD 925 (1692)
T ss_pred HHHHHHHHhhhhhccHHHHHHHHH------HHHhhcCCCchhHHHHHHHHHHHHHHhCCC
Confidence 889998888554 5554443332 334444566788999999999999966543
No 374
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=27.60 E-value=43 Score=23.60 Aligned_cols=10 Identities=20% Similarity=0.414 Sum_probs=7.7
Q ss_pred CCCCCCCCCC
Q 004582 299 HTTCPKTHMR 308 (744)
Q Consensus 299 ~~~cP~t~~~ 308 (744)
...||.|+.+
T Consensus 18 p~~CP~Cg~~ 27 (34)
T cd00729 18 PEKCPICGAP 27 (34)
T ss_pred CCcCcCCCCc
Confidence 3589999875
No 375
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=27.51 E-value=28 Score=27.00 Aligned_cols=13 Identities=15% Similarity=0.652 Sum_probs=11.2
Q ss_pred CCCCccccccccc
Q 004582 260 EPPEEFKCSISLR 272 (744)
Q Consensus 260 ~~p~~f~CPI~~~ 272 (744)
.+|++|.||+|+.
T Consensus 30 ~Lp~~w~CP~C~a 42 (50)
T cd00730 30 DLPDDWVCPVCGA 42 (50)
T ss_pred HCCCCCCCCCCCC
Confidence 4799999999974
No 376
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=27.27 E-value=75 Score=23.66 Aligned_cols=38 Identities=11% Similarity=0.244 Sum_probs=19.6
Q ss_pred ccccccCCCceecC---CCccccHHHHHHHHccCC-CCCCCC
Q 004582 268 SISLRLMYDPVVIA---SGKTFERVWIQKWFNAGH-TTCPKT 305 (744)
Q Consensus 268 PI~~~~m~dPV~~~---~G~ty~r~~I~~w~~~~~-~~cP~t 305 (744)
-+|.+|..-=+.=+ |+..+=..|+++||+... ..||.|
T Consensus 2 ~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 2 EACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred cccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 34444444444333 777889999999998643 369986
No 377
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=27.26 E-value=81 Score=28.62 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcCc
Q 004582 561 RELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLEDP 597 (744)
Q Consensus 561 k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~ 597 (744)
...++..|..|+..++--..+++.|+++.|+.||..+
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~He 99 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHE 99 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCC
Confidence 3556778889999999888999999999999999654
No 378
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=26.81 E-value=3.7e+02 Score=24.03 Aligned_cols=70 Identities=14% Similarity=0.163 Sum_probs=49.1
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHhCCcHHHHHHH-----h-hcCCHHHHHHHHHHHHHhh
Q 004582 625 CIDSIAKLLETGTREEQEHIVDVLLSLCHEHT-KYCQLANTESIIQCVVDI-----S-VNGNSRGKETAKELIMLLD 694 (744)
Q Consensus 625 ~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~-~~~~~v~~~G~i~~Lv~L-----l-~~~s~~~r~~A~~lL~~L~ 694 (744)
++..|.+-|.+.++.++-.|+.+|-.+..+.+ .+...+.....+.-++.+ . ...+..+|+++..++...+
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 45666677778899999999999999987654 455556565555555442 1 1236789999999887653
No 379
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.17 E-value=3.7e+02 Score=35.18 Aligned_cols=108 Identities=14% Similarity=0.072 Sum_probs=65.2
Q ss_pred CCcHhHHHHhcCccH-HHHHHHHHHHhc--CH-HHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Q 004582 585 DCTSKLVRLLEDPIL-SSYCIKIIKALC--TS-EARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQ 660 (744)
Q Consensus 585 G~v~~Lv~lL~~~~l-~~~al~~L~nLa--~~-e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~ 660 (744)
-.||.|.+.=.||+. +..|+.-++|.- .+ ........ ...+.|+.-|.+..-++||.++-+|..|-.+.+. .+
T Consensus 998 kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n--eIl~eLL~~lt~kewRVReasclAL~dLl~g~~~-~~ 1074 (1702)
T KOG0915|consen 998 KLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN--EILDELLVNLTSKEWRVREASCLALADLLQGRPF-DQ 1074 (1702)
T ss_pred HhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH--HHHHHHHHhccchhHHHHHHHHHHHHHHHcCCCh-HH
Confidence 567777777678764 567777777766 32 23333333 4556666666677789999999999999766432 11
Q ss_pred HHHh-CCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 004582 661 LANT-ESIIQCVVDISVNGNSRGKETAKELIMLLDH 695 (744)
Q Consensus 661 ~v~~-~G~i~~Lv~Ll~~~s~~~r~~A~~lL~~L~~ 695 (744)
.... ...-..+...+.+-.+.+|+.|-.+.+.+++
T Consensus 1075 ~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsK 1110 (1702)
T KOG0915|consen 1075 VKEKLPELWEAAFRVMDDIKESVREAADKAARALSK 1110 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1233344444555556666666666665553
No 380
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.07 E-value=5.8e+02 Score=31.33 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=26.9
Q ss_pred cchHHHHHhhcchh--H-HHHHHHH-HHhccChhhhHHHHhcCCchh
Q 004582 506 DEICTFALFLDSEI--M-EEALEII-EVLSHQQNYASELVASGIIPS 548 (744)
Q Consensus 506 Gai~~Lv~lL~s~~--~-e~A~~~L-~~Ls~~~~~k~~I~~~G~Ip~ 548 (744)
..+|.++.+|.++. . ..|+.++ ..|+..+.+...|..++-+++
T Consensus 498 ~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap 544 (960)
T KOG1992|consen 498 ALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAP 544 (960)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcch
Confidence 35777888887653 2 4566666 555655555677776665554
No 381
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=25.01 E-value=7.6e+02 Score=25.34 Aligned_cols=133 Identities=16% Similarity=0.184 Sum_probs=74.1
Q ss_pred hhhhc-ccccCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCCcHhHHHHhcCccHHH--HHHHHHHHhcCHHHHHHHHhh
Q 004582 547 PSIIK-FLDTGTRESRELAIKILCNLSSGD-NIVYHILYLDCTSKLVRLLEDPILSS--YCIKIIKALCTSEARAAVAES 622 (744)
Q Consensus 547 p~Lv~-lL~s~~~~~k~~A~~aL~nLs~~~-~n~~~iv~aG~v~~Lv~lL~~~~l~~--~al~~L~nLa~~e~~~~i~~~ 622 (744)
|.|+. .-+..+++.+...+.+|..++.++ .+...+ +..|..+...+...- -+...+..+-..+.|.-
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence 44444 445567789999999999999887 444333 233444444443332 34444444442222220
Q ss_pred CCcHHHHHHH-----Hc--CCCHHHHH---HHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHh-hcCCHHHHHHHHHHHH
Q 004582 623 NPCIDSIAKL-----LE--TGTREEQE---HIVDVLLSLCHEHTKYCQLANTESIIQCVVDIS-VNGNSRGKETAKELIM 691 (744)
Q Consensus 623 ~g~V~~Lv~l-----L~--~~s~~~~e---~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll-~~~s~~~r~~A~~lL~ 691 (744)
+.+..++.. .. .+.....+ .....+..+|...+... .-.++.+..++ ...++.++..|...|.
T Consensus 74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~l~ 147 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEALA 147 (234)
T ss_pred -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 223333333 11 11222222 33346777787766511 11578888888 7888888888888887
Q ss_pred Hhh
Q 004582 692 LLD 694 (744)
Q Consensus 692 ~L~ 694 (744)
.|-
T Consensus 148 ~Lc 150 (234)
T PF12530_consen 148 PLC 150 (234)
T ss_pred HHH
Confidence 765
No 382
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=24.86 E-value=2.5e+02 Score=33.02 Aligned_cols=81 Identities=6% Similarity=0.094 Sum_probs=63.1
Q ss_pred CHHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCHHHHHHHHHHHH
Q 004582 612 TSEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIM 691 (744)
Q Consensus 612 ~~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~A~~lL~ 691 (744)
.|+| ..++. |.+..++.-+.+.+..+|..++.+|..+.-+- .......-.|.+..|.+-+-+-.+-+|..|...|.
T Consensus 82 dpeg-~~~V~--~~~~h~lRg~eskdk~VR~r~lqila~~~d~v-~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~ 157 (885)
T COG5218 82 DPEG-EELVA--GTFYHLLRGTESKDKKVRKRSLQILALLSDVV-REIDEVLANGLLEKLSERLFDREKAVRREAVKVLC 157 (885)
T ss_pred Chhh-hHHHH--HHHHHHHhcccCcchhHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 5777 55666 77888888888889999999999998886432 22345566778888888888889999999999998
Q ss_pred Hhhhc
Q 004582 692 LLDHC 696 (744)
Q Consensus 692 ~L~~~ 696 (744)
.+.+.
T Consensus 158 ~~Qe~ 162 (885)
T COG5218 158 YYQEM 162 (885)
T ss_pred HHHhc
Confidence 88743
No 383
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.85 E-value=24 Score=31.38 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=17.7
Q ss_pred CCCCCCCCCCCCCCCCCcccHHH
Q 004582 298 GHTTCPKTHMRLDNVSVTPNVAI 320 (744)
Q Consensus 298 ~~~~cP~t~~~l~~~~l~pn~~l 320 (744)
|...||.||.++....+.-|.+|
T Consensus 48 G~t~CP~Cg~~~e~~fvva~~aL 70 (115)
T COG1885 48 GSTSCPKCGEPFESAFVVANTAL 70 (115)
T ss_pred ccccCCCCCCccceeEEEeccee
Confidence 67789999999887666766544
No 384
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=24.57 E-value=32 Score=26.32 Aligned_cols=13 Identities=15% Similarity=0.652 Sum_probs=8.2
Q ss_pred CCCCccccccccc
Q 004582 260 EPPEEFKCSISLR 272 (744)
Q Consensus 260 ~~p~~f~CPI~~~ 272 (744)
.+|+++.||+|..
T Consensus 30 ~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 30 DLPDDWVCPVCGA 42 (47)
T ss_dssp GS-TT-B-TTTSS
T ss_pred HCCCCCcCcCCCC
Confidence 5799999999964
No 385
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=24.56 E-value=7.3e+02 Score=30.28 Aligned_cols=106 Identities=13% Similarity=0.096 Sum_probs=73.7
Q ss_pred hhhcccccCCHHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcC--ccHHHHHHHHHHHhc--CHHHHHHHHhhC
Q 004582 548 SIIKFLDTGTRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLED--PILSSYCIKIIKALC--TSEARAAVAESN 623 (744)
Q Consensus 548 ~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~--~~l~~~al~~L~nLa--~~e~~~~i~~~~ 623 (744)
.+...+.+++...-...+.++.++..-..-...- ...-+++-..-..+ +.+.+....+|..++ .++.-..+....
T Consensus 445 ~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~d~ 523 (727)
T PF12726_consen 445 ALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELLSDP 523 (727)
T ss_pred HHHHhhcCCChHHHHHHHHHHHHhccccccCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHcCc
Confidence 3455566677777777777887776543211110 11112222222211 356788899999999 889989898878
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Q 004582 624 PCIDSIAKLLETGTREEQEHIVDVLLSLCHE 654 (744)
Q Consensus 624 g~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~ 654 (744)
++...++.++=+++.++.+.|..+|......
T Consensus 524 ~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~ 554 (727)
T PF12726_consen 524 DAAQAIWSLLFSPDDDLYQAAQDLLKQAFDV 554 (727)
T ss_pred chhhHHHhheeCCChHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999998744
No 386
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=24.37 E-value=2.1e+02 Score=34.41 Aligned_cols=94 Identities=15% Similarity=0.160 Sum_probs=59.5
Q ss_pred cCCchhhhcc-cccCCHHHHHHHHHHHHHhcCCcchHHHHHhcCCcHhHHHHhcC---ccHHHHHHHHHHHhc-CHHHHH
Q 004582 543 SGIIPSIIKF-LDTGTRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLED---PILSSYCIKIIKALC-TSEARA 617 (744)
Q Consensus 543 ~G~Ip~Lv~l-L~s~~~~~k~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~---~~l~~~al~~L~nLa-~~e~~~ 617 (744)
.++|..|+++ ....+.++|..|.-+|.-++..+. ..+|..|.+|.+ +.++--++-+|..-| ..-.+.
T Consensus 553 nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp--------~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e 624 (929)
T KOG2062|consen 553 NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP--------EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE 624 (929)
T ss_pred hhhHHHhhcccccccchHHHHHHHHHheeeEecCh--------hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH
Confidence 4567777777 667888999999999887665543 345666778843 567777777777777 433333
Q ss_pred HHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 004582 618 AVAESNPCIDSIAKLLETGTREEQEHIVDVLLSL 651 (744)
Q Consensus 618 ~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~L 651 (744)
+ +..|-.|......-+|+-|+-++..+
T Consensus 625 A-------i~lLepl~~D~~~fVRQgAlIa~amI 651 (929)
T KOG2062|consen 625 A-------INLLEPLTSDPVDFVRQGALIALAMI 651 (929)
T ss_pred H-------HHHHhhhhcChHHHHHHHHHHHHHHH
Confidence 2 22333344444555677776666544
No 387
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=24.06 E-value=1.2e+02 Score=36.27 Aligned_cols=127 Identities=9% Similarity=0.081 Sum_probs=74.6
Q ss_pred cHHHHHhh-cCCCHHHHHHHHHHHHHHhhhcchhhHHHhhCCChHHHHHH-hcccccCCCHHHHHHHHHHHHHHhcCCCC
Q 004582 421 DLTSLSKL-ASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKF-LKDAHNLCDAKAQKDGAEVLLAILSQSRD 498 (744)
Q Consensus 421 ~~~ll~~L-~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~LV~l-L~~~~~~~d~~~q~~A~~~L~nLs~~~~n 498 (744)
...++..| .+.++-.|...+..+..- ..+.. ..++|..|+.+ .++ .|..++++|+.+|.-++..+.+
T Consensus 520 Ad~lI~el~~dkdpilR~~Gm~t~alA-y~GTg------nnkair~lLh~aVsD----~nDDVrRaAVialGFVl~~dp~ 588 (929)
T KOG2062|consen 520 ADPLIKELLRDKDPILRYGGMYTLALA-YVGTG------NNKAIRRLLHVAVSD----VNDDVRRAAVIALGFVLFRDPE 588 (929)
T ss_pred hHHHHHHHhcCCchhhhhhhHHHHHHH-HhccC------chhhHHHhhcccccc----cchHHHHHHHHHheeeEecChh
Confidence 34566554 566788888777766543 32222 24667777766 344 6889999999999888876655
Q ss_pred CcccccccchHHHHHhhcc----hhHHHHHHHHHHhccChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHhc
Q 004582 499 EMPLFHKDEICTFALFLDS----EIMEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLS 572 (744)
Q Consensus 499 k~~iv~~Gai~~Lv~lL~s----~~~e~A~~~L~~Ls~~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs 572 (744)
. ++..|++|.. .+..-|+-+|.-.+....++..| ..+.+|+ .....-+|+.|+-++.-+.
T Consensus 589 ~--------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi---~lLepl~---~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 589 Q--------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAI---NLLEPLT---SDPVDFVRQGALIALAMIM 652 (929)
T ss_pred h--------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHH---HHHhhhh---cChHHHHHHHHHHHHHHHH
Confidence 3 4456666643 23445666666555545555555 2233333 2333347777766665543
No 388
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=23.64 E-value=1.9e+02 Score=26.32 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=28.0
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Q 004582 625 CIDSIAKLLETGTREEQEHIVDVLLSLCHEH 655 (744)
Q Consensus 625 ~V~~Lv~lL~~~s~~~~e~A~~~L~~Lc~~~ 655 (744)
+|+.||.-|.+.++++...|+.+|...|...
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch
Confidence 5788999999999999999999999999776
No 389
>PRK03922 hypothetical protein; Provisional
Probab=23.59 E-value=26 Score=31.50 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=16.8
Q ss_pred CCCCCCCCCCCCCCCCCcccHHH
Q 004582 298 GHTTCPKTHMRLDNVSVTPNVAI 320 (744)
Q Consensus 298 ~~~~cP~t~~~l~~~~l~pn~~l 320 (744)
|..+||.|+.++....+.-|.+|
T Consensus 48 G~~~cP~cge~~~~afvvA~taL 70 (113)
T PRK03922 48 GLTICPKCGEPFDSAFVVADTAL 70 (113)
T ss_pred CcccCCCCCCcCCcEEEEeccce
Confidence 56789999999887666666433
No 390
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=23.22 E-value=3.1e+02 Score=29.16 Aligned_cols=68 Identities=21% Similarity=0.115 Sum_probs=48.4
Q ss_pred CCchhhhcccccCCHHHHHHHHHHHHHhcCCcchHH--HHHhcCCcHhHHHHhc------------Cc--cHHHHHHHHH
Q 004582 544 GIIPSIIKFLDTGTRESRELAIKILCNLSSGDNIVY--HILYLDCTSKLVRLLE------------DP--ILSSYCIKII 607 (744)
Q Consensus 544 G~Ip~Lv~lL~s~~~~~k~~A~~aL~nLs~~~~n~~--~iv~aG~v~~Lv~lL~------------~~--~l~~~al~~L 607 (744)
=.+|+++.++++.+.+.|..++.+|..+...-.... .+.+.|..+.+-+.|. +. .+...+..+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 379999999999999999999999999987544332 2456676665555441 11 3566777777
Q ss_pred HHhc
Q 004582 608 KALC 611 (744)
Q Consensus 608 ~nLa 611 (744)
..|+
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 7774
No 391
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=23.21 E-value=3.7e+02 Score=26.02 Aligned_cols=70 Identities=19% Similarity=0.210 Sum_probs=43.8
Q ss_pred HHHhcCCcHhHHHHhcCccHH---HHHHHHHHHhc-C-HHHHHHHHhhCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 004582 580 HILYLDCTSKLVRLLEDPILS---SYCIKIIKALC-T-SEARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSL 651 (744)
Q Consensus 580 ~iv~aG~v~~Lv~lL~~~~l~---~~al~~L~nLa-~-~e~~~~i~~~~g~V~~Lv~lL~~~s~~~~e~A~~~L~~L 651 (744)
...-..++..|+.+|.|+.+. ..++.++.++- . ...+..... -+||.++..+++.++..+|.-..-|..|
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~--~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP--QVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH--HHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344456788999999887543 34444444444 1 122233344 5789999999987778888765555444
No 392
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=22.96 E-value=43 Score=27.39 Aligned_cols=13 Identities=31% Similarity=0.774 Sum_probs=9.4
Q ss_pred cccHHHHHHHHcc
Q 004582 285 TFERVWIQKWFNA 297 (744)
Q Consensus 285 ty~r~~I~~w~~~ 297 (744)
-|||.|+-+|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999974
No 393
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.95 E-value=2.7e+02 Score=32.03 Aligned_cols=145 Identities=13% Similarity=0.113 Sum_probs=82.8
Q ss_pred cCCchhhhccc----ccCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCCcHhHHHHhcC---ccHHHHHHHHHHHhc-CH
Q 004582 543 SGIIPSIIKFL----DTGTRESRELAIKILCNLSSG-DNIVYHILYLDCTSKLVRLLED---PILSSYCIKIIKALC-TS 613 (744)
Q Consensus 543 ~G~Ip~Lv~lL----~s~~~~~k~~A~~aL~nLs~~-~~n~~~iv~aG~v~~Lv~lL~~---~~l~~~al~~L~nLa-~~ 613 (744)
.|.+..++..| .+++...+..|+..|.|.++. ++-+... ..-.+..++.-|.| .++.-+++.+|..+. .-
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th-~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH-KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 34444444333 445668999999999999988 4433333 33344445555544 456777777777666 33
Q ss_pred HHHHHHHhhCCcH---HHHHHHHcCCCHHHHHHHHHHHHHHh---cCCHH--HHHHHHhCCcHHHHHHHhhcCCHHHHHH
Q 004582 614 EARAAVAESNPCI---DSIAKLLETGTREEQEHIVDVLLSLC---HEHTK--YCQLANTESIIQCVVDISVNGNSRGKET 685 (744)
Q Consensus 614 e~~~~i~~~~g~V---~~Lv~lL~~~s~~~~e~A~~~L~~Lc---~~~~~--~~~~v~~~G~i~~Lv~Ll~~~s~~~r~~ 685 (744)
.+.. +. .+.+ -.+..+.++.+++.+-+|...+..|+ .+.-+ ....+.. ...+|+--+.+.++.+.+.
T Consensus 332 ~~~~--l~-~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k--~~~~lllhl~d~~p~va~A 406 (533)
T KOG2032|consen 332 SNDD--LE-SYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKK--RLAPLLLHLQDPNPYVARA 406 (533)
T ss_pred hhcc--hh-hhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHh--ccccceeeeCCCChHHHHH
Confidence 3333 11 1333 34555667788899998887777665 22211 2222222 2234555567777777666
Q ss_pred HHHHHHHh
Q 004582 686 AKELIMLL 693 (744)
Q Consensus 686 A~~lL~~L 693 (744)
....++.+
T Consensus 407 Cr~~~~~c 414 (533)
T KOG2032|consen 407 CRSELRTC 414 (533)
T ss_pred HHHHHHhc
Confidence 66665543
No 394
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.58 E-value=44 Score=35.19 Aligned_cols=26 Identities=19% Similarity=0.424 Sum_probs=20.9
Q ss_pred cccHHHHHHHHcc------------CCCCCCCCCCCCC
Q 004582 285 TFERVWIQKWFNA------------GHTTCPKTHMRLD 310 (744)
Q Consensus 285 ty~r~~I~~w~~~------------~~~~cP~t~~~l~ 310 (744)
-+||+|+-+||.. |..+||.|+..++
T Consensus 328 ~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 328 LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 5788999999842 5678999998765
No 395
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=22.42 E-value=69 Score=31.76 Aligned_cols=55 Identities=18% Similarity=0.114 Sum_probs=32.8
Q ss_pred CCccccccccccCCCceecCCCccccHHHHHHHHccCCCCCCCCCCCCCCCCC-cccHHHHHHHHHHHHHcC
Q 004582 262 PEEFKCSISLRLMYDPVVIASGKTFERVWIQKWFNAGHTTCPKTHMRLDNVSV-TPNVAIKELISQWCLKHG 332 (744)
Q Consensus 262 p~~f~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~~~l-~pn~~l~~~i~~~~~~~~ 332 (744)
+..|.||-|..- .||+- + ++ ...+||.||.+|.+.+= .--..|++.|...-+.-+
T Consensus 115 ~~~Y~Cp~C~~r----------ytf~e-A----~~-~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~~~ 170 (178)
T PRK06266 115 NMFFFCPNCHIR----------FTFDE-A----ME-YGFRCPQCGEMLEEYDNSELIKELKEQIKELEEELK 170 (178)
T ss_pred CCEEECCCCCcE----------EeHHH-H----hh-cCCcCCCCCCCCeecccHHHHHHHHHHHHHHHHHhc
Confidence 578999987641 23332 2 22 46899999999865321 112356777766655444
No 396
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=22.38 E-value=1.7e+02 Score=35.93 Aligned_cols=141 Identities=15% Similarity=0.175 Sum_probs=86.5
Q ss_pred cHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchhhHHHh--hCCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCCC
Q 004582 421 DLTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAF--LNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRD 498 (744)
Q Consensus 421 ~~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~--~~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~n 498 (744)
.|.+++.....+-.++..-+..|-++.+.-|. ..+. -...+|.|++.|+- .|..+|..+..++--+......
T Consensus 869 vP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~----~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 869 VPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSM----PDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCC----CccchhhhHhhhhhHHHHhccc
Confidence 35566666655667788888888888774333 2222 25678888888877 6888888887777666543322
Q ss_pred CcccccccchHHHHHhhcch------hHHHHHHHHHHhcc-ChhhhHHHHhcCCchhhhcccccCCHHHHHHHHHH
Q 004582 499 EMPLFHKDEICTFALFLDSE------IMEEALEIIEVLSH-QQNYASELVASGIIPSIIKFLDTGTRESRELAIKI 567 (744)
Q Consensus 499 k~~iv~~Gai~~Lv~lL~s~------~~e~A~~~L~~Ls~-~~~~k~~I~~~G~Ip~Lv~lL~s~~~~~k~~A~~a 567 (744)
-..---.-.||.+..+-.+. +.+.|+..|..|.. .+...-.-.....|..|++.|++...-+|+.|+.+
T Consensus 943 L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 943 LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 21111112344444443221 23678888888877 44333333345567788888887777788887765
No 397
>PF04475 DUF555: Protein of unknown function (DUF555); InterPro: IPR007564 This is a family of uncharacterised, hypothetical archaeal proteins.
Probab=22.15 E-value=31 Score=30.52 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=15.2
Q ss_pred CCCCCCCCCCCCCCCCCcccHH
Q 004582 298 GHTTCPKTHMRLDNVSVTPNVA 319 (744)
Q Consensus 298 ~~~~cP~t~~~l~~~~l~pn~~ 319 (744)
|...||.|++++....+.-|.+
T Consensus 46 G~~~cP~Cge~~~~a~vva~ta 67 (102)
T PF04475_consen 46 GDTICPKCGEELDSAFVVADTA 67 (102)
T ss_pred CcccCCCCCCccCceEEEeccc
Confidence 5667888888887665555543
No 398
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=22.03 E-value=3e+02 Score=33.05 Aligned_cols=51 Identities=25% Similarity=0.355 Sum_probs=31.6
Q ss_pred CCCCCCCCccccccccccCCCceecCCCccc-------cHHHHHHHHc---cCCCCCCCCCCC
Q 004582 256 SGVLEPPEEFKCSISLRLMYDPVVIASGKTF-------ERVWIQKWFN---AGHTTCPKTHMR 308 (744)
Q Consensus 256 ~~~~~~p~~f~CPI~~~~m~dPV~~~~G~ty-------~r~~I~~w~~---~~~~~cP~t~~~ 308 (744)
.+....|.+..||-|.. +=||-+++|.-. |..|-..-.. ..+.+||.|..+
T Consensus 1123 cg~~i~~~~~~c~ec~~--kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~y~~CPLCHs~ 1183 (1189)
T KOG2041|consen 1123 CGAKIDPYDLQCSECQT--KFPVCIASGRPITDNIFWLCPRCKHRAHQHEISKYNCCPLCHSM 1183 (1189)
T ss_pred cCCcCCccCCCChhhcC--cCceeeccCCccccceEEEccccccccccccccccccCccccCh
Confidence 34456788999999987 668888888532 3333222211 235678888554
No 399
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=21.32 E-value=68 Score=24.33 Aligned_cols=29 Identities=17% Similarity=0.558 Sum_probs=17.7
Q ss_pred ceecCCCc-----cccHHHHHHHHc-cCCCCCCCC
Q 004582 277 PVVIASGK-----TFERVWIQKWFN-AGHTTCPKT 305 (744)
Q Consensus 277 PV~~~~G~-----ty~r~~I~~w~~-~~~~~cP~t 305 (744)
|.+.||+- -.=++|+++|+. .++.+|+.|
T Consensus 13 ~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 13 PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp -EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 67777653 335789999997 467779876
No 400
>PHA00733 hypothetical protein
Probab=21.21 E-value=1.9e+02 Score=26.96 Aligned_cols=52 Identities=19% Similarity=0.449 Sum_probs=31.7
Q ss_pred ccccccccccCCCceecCCCccccHHHHHHHHc--cCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 004582 264 EFKCSISLRLMYDPVVIASGKTFERVWIQKWFN--AGHTTCPKTHMRLDNVSVTPNVAIKELISQWCLKHGIS 334 (744)
Q Consensus 264 ~f~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~--~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~~~ 334 (744)
.|.|+.|+..|..+.. +..+.. .....|+.|+..+... ..+...+++.|+|-
T Consensus 73 Py~C~~Cgk~Fss~s~-----------L~~H~r~h~~~~~C~~CgK~F~~~--------~sL~~H~~~~h~~~ 126 (128)
T PHA00733 73 PYVCPLCLMPFSSSVS-----------LKQHIRYTEHSKVCPVCGKEFRNT--------DSTLDHVCKKHNIC 126 (128)
T ss_pred CccCCCCCCcCCCHHH-----------HHHHHhcCCcCccCCCCCCccCCH--------HHHHHHHHHhcCcc
Confidence 4789997776655533 334433 2356899998766432 23345677788763
No 401
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=20.87 E-value=64 Score=31.92 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=32.1
Q ss_pred CCccccccccccCCCceecCCCccccHHHHHHHHccCCCCCCCCCCCCCCCCCcc-cHHHHHHHHHHHH
Q 004582 262 PEEFKCSISLRLMYDPVVIASGKTFERVWIQKWFNAGHTTCPKTHMRLDNVSVTP-NVAIKELISQWCL 329 (744)
Q Consensus 262 p~~f~CPI~~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~cP~t~~~l~~~~l~p-n~~l~~~i~~~~~ 329 (744)
+..|.||.|.-= .||+.. +.. ..+||.||..|...+-.+ .-.+.+.|...-.
T Consensus 111 ~~~y~C~~~~~r----------~sfdeA-----~~~-~F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~~ 163 (176)
T COG1675 111 NNYYVCPNCHVK----------YSFDEA-----MEL-GFTCPKCGEDLEEYDSSEEIEELESELDELEE 163 (176)
T ss_pred CCceeCCCCCCc----------ccHHHH-----HHh-CCCCCCCCchhhhccchHHHHHHHHHHHHHHH
Confidence 567899988642 244444 333 379999999987544433 3345666655543
No 402
>TIGR03847 conserved hypothetical protein. The conserved hypothetical protein described here occurs as part of the trio of uncharacterized proteins common in the Actinobacteria.
Probab=20.78 E-value=92 Score=30.59 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=16.9
Q ss_pred HccCCCCCCCCCCCCCC-CCCcc
Q 004582 295 FNAGHTTCPKTHMRLDN-VSVTP 316 (744)
Q Consensus 295 ~~~~~~~cP~t~~~l~~-~~l~p 316 (744)
...|.+.||.|++|+.. -++.|
T Consensus 152 VaAGRP~CPlCg~PldP~GH~Cp 174 (177)
T TIGR03847 152 VAAGRPPCPLCGRPIDPDGHICP 174 (177)
T ss_pred HhCCCCCCCCCCCCCCCCCccCC
Confidence 45799999999999964 35554
No 403
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.53 E-value=22 Score=29.98 Aligned_cols=12 Identities=17% Similarity=0.152 Sum_probs=8.6
Q ss_pred cccccccccCCC
Q 004582 265 FKCSISLRLMYD 276 (744)
Q Consensus 265 f~CPI~~~~m~d 276 (744)
+.||||.--|.-
T Consensus 2 llCP~C~v~l~~ 13 (88)
T COG3809 2 LLCPICGVELVM 13 (88)
T ss_pred cccCcCCceeee
Confidence 479999876543
No 404
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=20.11 E-value=35 Score=21.14 Aligned_cols=13 Identities=23% Similarity=0.516 Sum_probs=8.1
Q ss_pred cccccccccCCCc
Q 004582 265 FKCSISLRLMYDP 277 (744)
Q Consensus 265 f~CPI~~~~m~dP 277 (744)
|.||+|...|.++
T Consensus 1 y~C~~C~~~f~~~ 13 (23)
T PF00096_consen 1 YKCPICGKSFSSK 13 (23)
T ss_dssp EEETTTTEEESSH
T ss_pred CCCCCCCCccCCH
Confidence 4577776666554
Done!