BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004583
(744 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 742
Score = 413 bits (1062), Expect = e-115, Method: Compositional matrix adjust.
Identities = 246/708 (34%), Positives = 392/708 (55%), Gaps = 42/708 (5%)
Query: 45 LYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFM-LRELVKRWSN 103
LY + N+C+ H S LY + R++ E+++ + +LP + D + L+++ W +
Sbjct: 69 LYQAVENLCS----HKVSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKKINTCWQD 124
Query: 104 HKVMVRWLSRFFHYLDRYFIARRS-LPPLNEVGLTCFRDLVYTE--LNGKVRDAVITLID 160
H + + F +LDR ++ + S LP + ++GL FR + ++ + K D ++ LI+
Sbjct: 125 HCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIE 184
Query: 161 QEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSC 220
+ER GE +DR+LL+++L + + + Y++ FE L++T Y+ + + E
Sbjct: 185 RERSGEAVDRSLLRSLLGM-----LSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREV 239
Query: 221 PDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRD 280
P+Y+ + L+ E DRV YL S++ L+ V+ +LL + +L+K G LL +
Sbjct: 240 PEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQLLGEHLTAILQK---GLDHLLDE 296
Query: 281 DKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQ 340
++V DL++M++LFS++ G + + +++ GTA+V E +
Sbjct: 297 NRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINPE----------------K 340
Query: 341 EQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDN 400
++ V+ +++ DK + CFQ + F +KE+FE F NK + AEL+A D+
Sbjct: 341 DKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINK--RPNKPAELIAKHVDS 398
Query: 401 ILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERS 460
L+ G E +DE +E L+K++ L +I KD+F FY+K LA+RLL KSA+ D E+S
Sbjct: 399 KLRAGNKEA-TDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKS 457
Query: 461 ILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFW 520
+L+KLK +CG FTSK+EGM D+ L+++ F++++ N ++ P IDLTV +LT G+W
Sbjct: 458 MLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSDSGP-IDLTVNILTMGYW 516
Query: 521 PSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTT 580
P+Y +++L EM+K EVF+ FY K RKL W +LG L +F+ E V+
Sbjct: 517 PTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSL 576
Query: 581 YQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDH 640
+Q LL+FN D S+ EI + D ++ R L SL+C K ++L K P K + D
Sbjct: 577 FQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDK 636
Query: 641 FEFNSKFTDKMRRIKIPL----PPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQ 696
F FN +F K+ RIKI R+Y IDA+IVRIMK RK LGH
Sbjct: 637 FIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHN 696
Query: 697 QLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 744
LV E QL KP +KKRIE LI RDY+ERDK NPN + Y+A
Sbjct: 697 LLVSELYNQLKFPVKPG--DLKKRIESLIDRDYMERDKDNPNQYHYVA 742
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 759
Score = 413 bits (1062), Expect = e-115, Method: Compositional matrix adjust.
Identities = 246/708 (34%), Positives = 392/708 (55%), Gaps = 42/708 (5%)
Query: 45 LYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFM-LRELVKRWSN 103
LY + N+C+ H S LY + R++ E+++ + +LP + D + L+++ W +
Sbjct: 86 LYQAVENLCS----HKVSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKKINTCWQD 141
Query: 104 HKVMVRWLSRFFHYLDRYFIARRS-LPPLNEVGLTCFRDLVYTE--LNGKVRDAVITLID 160
H + + F +LDR ++ + S LP + ++GL FR + ++ + K D ++ LI+
Sbjct: 142 HCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIE 201
Query: 161 QEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSC 220
+ER GE +DR+LL+++L + + + Y++ FE L++T Y+ + + E
Sbjct: 202 RERSGEAVDRSLLRSLLGM-----LSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREV 256
Query: 221 PDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRD 280
P+Y+ + L+ E DRV YL S++ L+ V+ +LL + +L+K G LL +
Sbjct: 257 PEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQLLGEHLTAILQK---GLDHLLDE 313
Query: 281 DKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQ 340
++V DL++M++LFS++ G + + +++ GTA+V E +
Sbjct: 314 NRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINPE----------------K 357
Query: 341 EQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDN 400
++ V+ +++ DK + CFQ + F +KE+FE F NK + AEL+A D+
Sbjct: 358 DKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINK--RPNKPAELIAKHVDS 415
Query: 401 ILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERS 460
L+ G E +DE +E L+K++ L +I KD+F FY+K LA+RLL KSA+ D E+S
Sbjct: 416 KLRAGNKEA-TDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKS 474
Query: 461 ILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFW 520
+L+KLK +CG FTSK+EGM D+ L+++ F++++ N ++ P IDLTV +LT G+W
Sbjct: 475 MLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSDSGP-IDLTVNILTMGYW 533
Query: 521 PSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTT 580
P+Y +++L EM+K EVF+ FY K RKL W +LG L +F+ E V+
Sbjct: 534 PTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSL 593
Query: 581 YQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDH 640
+Q LL+FN D S+ EI + D ++ R L SL+C K ++L K P K + D
Sbjct: 594 FQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDK 653
Query: 641 FEFNSKFTDKMRRIKIPL----PPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQ 696
F FN +F K+ RIKI R+Y IDA+IVRIMK RK LGH
Sbjct: 654 FIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHN 713
Query: 697 QLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 744
LV E QL KP +KKRIE LI RDY+ERDK NPN + Y+A
Sbjct: 714 LLVSELYNQLKFPVKPG--DLKKRIESLIDRDYMERDKDNPNQYHYVA 759
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|E Chain E, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 741
Score = 391 bits (1004), Expect = e-109, Method: Compositional matrix adjust.
Identities = 248/729 (34%), Positives = 402/729 (55%), Gaps = 42/729 (5%)
Query: 24 KLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLP 83
KLK +E + + LY + N+C+ K S LY + R+ E++I + +
Sbjct: 47 KLKEAVEAIQNSTSIKYNLEELYQAVENLCSYK----ISANLYKQLRQICEDHIKAQIHQ 102
Query: 84 SIREKHDEFM-LRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRS-LPPLNEVGLTCFRD 141
+ D + L+++ + W NH + + F +LDR ++ + S LP + ++GL FR
Sbjct: 103 FREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRA 162
Query: 142 LVYTE--LNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAM 199
+ ++ + K D ++ LI++ER GE IDR+LL+++L + ++ + Y++ FE
Sbjct: 163 HIISDQKVQNKTIDGILLLIERERNGEAIDRSLLRSLLSMLSDLQI-----YQDSFEQRF 217
Query: 200 LKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELL 259
L++T Y+ + + E P+Y+ + L+ E DR+ YL +++ L+ V+ +LL
Sbjct: 218 LEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKSLIATVEKQLL 277
Query: 260 SVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALV 319
+ +L+K G + LL +++++DLS +++LFS++ G+ + + +++ A G+ +V
Sbjct: 278 GEHLTAILQK---GLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIV 334
Query: 320 KLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEV 379
E +++ V+++++ DK ++ CF + F ++KEAFE
Sbjct: 335 INPE----------------KDKTMVQELLDFKDKVDHIIDICFLKNEKFINAMKEAFET 378
Query: 380 FCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFY 439
F NK + AEL+A + D+ L+ G E +DE +E+ML+K++ + +I KD+F FY
Sbjct: 379 FINK--RPNKPAELIAKYVDSKLRAGNKEA-TDEELEKMLDKIMIIFRFIYGKDVFEAFY 435
Query: 440 RKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLS 499
+K LA+RLL KSA+ D E+S+L+KLK +CG FTSK+EGM D+ L+++ F++Y+
Sbjct: 436 KKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMIQFKQYMQ 495
Query: 500 NNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYS 559
N N I+LTV +LT G+WP+Y +++LP EMVK E+F+ FY K RKL W +
Sbjct: 496 NQ-NVPGNIELTVNILTMGYWPTYVPMEVHLPPEMVKLQEIFKTFYLGKHSGRKLQWQST 554
Query: 560 LGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 619
LG C L +F+ EL V+ +Q LL+FN + S EI + D ++ R L SL+
Sbjct: 555 LGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFSLEEIKQATGIEDGELRRTLQSLA 614
Query: 620 CAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPL----PPXXXXXXXXXXXXXXR 675
C K ++L K P K I D F N F K+ RIKI R
Sbjct: 615 CGKARVLAKNPKGKDIEDGDKFICNDDFKHKLFRIKINQIQMKETVEEQASTTERVFQDR 674
Query: 676 RYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKS 735
+Y IDA+IVRIMK RK L H LV E QL KP +KKRIE LI RDY+ERDK
Sbjct: 675 QYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKP--ADLKKRIESLIDRDYMERDKE 732
Query: 736 NPNMFRYLA 744
NPN + Y+A
Sbjct: 733 NPNQYNYIA 741
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|H Chain H, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 726
Score = 390 bits (1003), Expect = e-108, Method: Compositional matrix adjust.
Identities = 248/729 (34%), Positives = 402/729 (55%), Gaps = 42/729 (5%)
Query: 24 KLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLP 83
KLK +E + + LY + N+C+ K S LY + R+ E++I + +
Sbjct: 32 KLKEAVEAIQNSTSIKYNLEELYQAVENLCSYK----ISANLYKQLRQICEDHIKAQIHQ 87
Query: 84 SIREKHDEFM-LRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRS-LPPLNEVGLTCFRD 141
+ D + L+++ + W NH + + F +LDR ++ + S LP + ++GL FR
Sbjct: 88 FREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRA 147
Query: 142 LVYTE--LNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAM 199
+ ++ + K D ++ LI++ER GE IDR+LL+++L + ++ + Y++ FE
Sbjct: 148 HIISDQKVQNKTIDGILLLIERERNGEAIDRSLLRSLLSMLSDLQI-----YQDSFEQRF 202
Query: 200 LKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELL 259
L++T Y+ + + E P+Y+ + L+ E DR+ YL +++ L+ V+ +LL
Sbjct: 203 LEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKSLIATVEKQLL 262
Query: 260 SVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALV 319
+ +L+K G + LL +++++DLS +++LFS++ G+ + + +++ A G+ +V
Sbjct: 263 GEHLTAILQK---GLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIV 319
Query: 320 KLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEV 379
E +++ V+++++ DK ++ CF + F ++KEAFE
Sbjct: 320 INPE----------------KDKTMVQELLDFKDKVDHIIDICFLKNEKFINAMKEAFET 363
Query: 380 FCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFY 439
F NK + AEL+A + D+ L+ G E +DE +E+ML+K++ + +I KD+F FY
Sbjct: 364 FINK--RPNKPAELIAKYVDSKLRAGNKEA-TDEELEKMLDKIMIIFRFIYGKDVFEAFY 420
Query: 440 RKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLS 499
+K LA+RLL KSA+ D E+S+L+KLK +CG FTSK+EGM D+ L+++ F++Y+
Sbjct: 421 KKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMIQFKQYMQ 480
Query: 500 NNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYS 559
N N I+LTV +LT G+WP+Y +++LP EMVK E+F+ FY K RKL W +
Sbjct: 481 NQ-NVPGNIELTVNILTMGYWPTYVPMEVHLPPEMVKLQEIFKTFYLGKHSGRKLQWQST 539
Query: 560 LGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 619
LG C L +F+ EL V+ +Q LL+FN + S EI + D ++ R L SL+
Sbjct: 540 LGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFSLEEIKQATGIEDGELRRTLQSLA 599
Query: 620 CAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPL----PPXXXXXXXXXXXXXXR 675
C K ++L K P K I D F N F K+ RIKI R
Sbjct: 600 CGKARVLAKNPKGKDIEDGDKFICNDDFKHKLFRIKINQIQMKETVEEQASTTERVFQDR 659
Query: 676 RYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKS 735
+Y IDA+IVRIMK RK L H LV E QL KP +KKRIE LI RDY+ERDK
Sbjct: 660 QYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKP--ADLKKRIESLIDRDYMERDKE 717
Query: 736 NPNMFRYLA 744
NPN + Y+A
Sbjct: 718 NPNQYNYIA 726
>pdb|1U6G|A Chain A, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 776
Score = 357 bits (915), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 243/791 (30%), Positives = 411/791 (51%), Gaps = 80/791 (10%)
Query: 7 KTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQK---------- 56
K I L+Q W+ ++ GI ++ + YM LYT +YN CT
Sbjct: 13 KQIGLDQIWDDLRAGIQQV------YTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAG 66
Query: 57 -PPHDYSQ------------QLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSN 103
PP + +LY + +E + Y+++ +L + DE +L+ ++W +
Sbjct: 67 VPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLTN-LLKDGEDLMDESVLKFYTQQWED 125
Query: 104 HKVMVRWLSRFFHYLDRYFI------ARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVIT 157
++ + L+ YL+R+++ R+ + + + L +RD ++ LN +V +AV+
Sbjct: 126 YRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLNKQVTNAVLK 185
Query: 158 LIDQEREGEQIDRALLKNVLDIFVEIGMGQMD---------YYENDFETAMLKDTAAYYS 208
LI++ER GE I+ L+ V+ +VE+G+ + D Y+ FE+ L DT +Y+
Sbjct: 186 LIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYT 245
Query: 209 RKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLE 268
R+++ ++ ++ +YM KAE L E+ RV YLH S++ +L K + L+ + LE
Sbjct: 246 RESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKH----LE 301
Query: 269 KEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASN 328
H+ LL DK EDL RM+ L S+I GL + + + H+ +G A ++ +AA N
Sbjct: 302 IFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALN 361
Query: 329 KKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGV--- 385
+++V+ V+++H KY A V F N F +L +A F N
Sbjct: 362 DP-----------KMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTK 410
Query: 386 ---AGSSSAELLATFCDNILKKGGSEKLSDEA-IEEMLEKVVKLLAYISDKDLFAEFYRK 441
+ S S ELLA +CD++LKK S K +EA +E+ L +V+ + YI DKD+F +FY K
Sbjct: 411 MAQSSSKSPELLARYCDSLLKK--SSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAK 468
Query: 442 KLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNN 501
LA+RL+ SA+DD E S+++KLKQ CG ++TSK++ M D+ ++++ F+++L+N+
Sbjct: 469 MLAKRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNS 528
Query: 502 PNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLG 561
+ +D ++ VL++G WP +S LP+E+ + + F FY ++ RKLTW+Y L
Sbjct: 529 EPLD--LDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLS 586
Query: 562 TCNLLGK-FESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSC 620
L+ F++R T L +T+Q + LL +N+ D + ++ + D + ++L L
Sbjct: 587 KGELVTNCFKNRYT-LQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLK 645
Query: 621 AKYKIL---NKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPXXXXXXXXXXXXXX--- 674
+K +L N + + P + + +K R+ I +P
Sbjct: 646 SKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEE 705
Query: 675 -RRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERD 733
R+ I A+IVRIMK RKVL HQQL+ E + QL FKP IKK I+ LI ++YLER
Sbjct: 706 DRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERV 765
Query: 734 KSNPNMFRYLA 744
+ + YLA
Sbjct: 766 DGEKDTYSYLA 776
>pdb|1LDJ|A Chain A, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 760
Score = 354 bits (908), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 241/787 (30%), Positives = 409/787 (51%), Gaps = 80/787 (10%)
Query: 11 LEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQK-----------PPH 59
L+Q W+ ++ GI ++ + YM LYT +YN CT PP
Sbjct: 1 LDQIWDDLRAGIQQV------YTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPS 54
Query: 60 DYSQ------------QLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVM 107
+ +LY + +E + Y+++ +L + DE +L+ ++W +++
Sbjct: 55 KSKKGQTPGGAQFVGLELYKRLKEFLKNYLTN-LLKDGEDLMDESVLKFYTQQWEDYRFS 113
Query: 108 VRWLSRFFHYLDRYFI------ARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQ 161
+ L+ YL+R+++ R+ + + + L +RD ++ LN +V +AV+ LI++
Sbjct: 114 SKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLNKQVTNAVLKLIEK 173
Query: 162 EREGEQIDRALLKNVLDIFVEIGMGQMD---------YYENDFETAMLKDTAAYYSRKAS 212
ER GE I+ L+ V+ +VE+G+ + D Y+ FE+ L DT +Y+R+++
Sbjct: 174 ERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTREST 233
Query: 213 NWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHS 272
++ ++ +YM KAE L E+ RV YLH S++ +L K + L+ + LE H+
Sbjct: 234 EFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKH----LEIFHT 289
Query: 273 GCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAE 332
LL DK EDL RM+ L S+I GL + + + H+ +G A ++ +AA N
Sbjct: 290 EFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALN---- 345
Query: 333 KRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGV------A 386
+++V+ V+++H KY A V F N F +L +A F N +
Sbjct: 346 -------DPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMAQS 398
Query: 387 GSSSAELLATFCDNILKKGGSEKLSDEA-IEEMLEKVVKLLAYISDKDLFAEFYRKKLAR 445
S S ELLA +CD++LKK S K +EA +E+ L +V+ + YI DKD+F +FY K LA+
Sbjct: 399 SSKSPELLARYCDSLLKK--SSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAK 456
Query: 446 RLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNAN 505
RL+ SA+DD E S+++KLKQ CG ++TSK++ M D+ ++++ F+++L+N+ +
Sbjct: 457 RLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLD 516
Query: 506 PGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNL 565
+D ++ VL++G WP +S LP+E+ + + F FY ++ RKLTW+Y L L
Sbjct: 517 --LDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGEL 574
Query: 566 LGK-FESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYK 624
+ F++R T L +T+Q + LL +N+ D + ++ + D + ++L L +K
Sbjct: 575 VTNCFKNRYT-LQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLL 633
Query: 625 IL---NKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPXXXXXXXXXXXXXX----RRY 677
+L N + + P + + +K R+ I +P R+
Sbjct: 634 VLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKL 693
Query: 678 AIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNP 737
I A+IVRIMK RKVL HQQL+ E + QL FKP IKK I+ LI ++YLER
Sbjct: 694 LIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEK 753
Query: 738 NMFRYLA 744
+ + YLA
Sbjct: 754 DTYSYLA 760
>pdb|1LDK|B Chain B, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 366
Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 129/368 (35%), Positives = 208/368 (56%), Gaps = 14/368 (3%)
Query: 386 AGSSSAELLATFCDNILKKGGSEKLSDEA-IEEMLEKVVKLLAYISDKDLFAEFYRKKLA 444
+ S S ELLA +CD++LKK S K +EA +E+ L +V+ + YI DKD+F +FY K LA
Sbjct: 4 SSSKSPELLARYCDSLLKK--SSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLA 61
Query: 445 RRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNA 504
+RL+ SA+DD E S+++KLKQ CG ++TSK++ M D+ ++++ F+++L+N+
Sbjct: 62 KRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPL 121
Query: 505 NPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCN 564
+ +D ++ VL++G WP +S LP+E+ + + F FY ++ RKLTW+Y L
Sbjct: 122 D--LDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGE 179
Query: 565 LLGK-FESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKY 623
L+ F++R T L +T+Q + LL +N+ D + ++ + D + ++L L +K
Sbjct: 180 LVTNCFKNRYT-LQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKL 238
Query: 624 KIL---NKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPXXXXXXXXXXXXXX----RR 676
+L N + + P + + +K R+ I +P R+
Sbjct: 239 LVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRK 298
Query: 677 YAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSN 736
I A+IVRIMK RKVL HQQL+ E + QL FKP IKK I+ LI ++YLER
Sbjct: 299 LLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGE 358
Query: 737 PNMFRYLA 744
+ + YLA
Sbjct: 359 KDTYSYLA 366
>pdb|3RTR|A Chain A, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|C Chain C, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|E Chain E, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|G Chain G, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
Length = 368
Score = 199 bits (507), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 127/368 (34%), Positives = 206/368 (55%), Gaps = 14/368 (3%)
Query: 386 AGSSSAELLATFCDNILKKGGSEKLSDEA-IEEMLEKVVKLLAYISDKDLFAEFYRKKLA 444
+ S S E LA +CD++LKK S K +EA +E+ L +V++ I DKD+F +FY K LA
Sbjct: 6 SSSKSPEELARYCDSLLKK--SSKNPEEAELEDTLNQVMEKFKKIEDKDVFQKFYAKMLA 63
Query: 445 RRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNA 504
+RL+ SA+DD E S+++KLKQ CG ++TSK++ M D+ ++++ F+++L+N+
Sbjct: 64 KRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPL 123
Query: 505 NPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCN 564
+ +D ++ VL++G WP +S LP+E+ + + F FY ++ RKLTW+Y L
Sbjct: 124 D--LDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGE 181
Query: 565 LLGK-FESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKY 623
L+ F++R T L +T+Q + LL +N+ D + ++ + D + ++L L +K
Sbjct: 182 LVTNCFKNRYT-LQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKL 240
Query: 624 KIL---NKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPXXXXXXXXXXXXXX----RR 676
+L N + + P + + +K R+ I +P R+
Sbjct: 241 LVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRK 300
Query: 677 YAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSN 736
I A+IVRIMK RKVL HQQL+ E + QL FKP IKK I+ LI ++YLER
Sbjct: 301 LLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGE 360
Query: 737 PNMFRYLA 744
+ + YLA
Sbjct: 361 KDTYSYLA 368
>pdb|1LDK|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 396
Score = 159 bits (402), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 113/412 (27%), Positives = 202/412 (49%), Gaps = 60/412 (14%)
Query: 9 IDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQK-----------P 57
I L+Q W+ ++ GI ++ + YM LYT +YN CT P
Sbjct: 1 IGLDQIWDDLRAGIQQV------YTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVP 54
Query: 58 PHDYSQ------------QLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHK 105
P + +LY + +E + Y+++ +L + DE +L+ ++W +++
Sbjct: 55 PSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLTN-LLKDGEDLMDESVLKFYTQQWEDYR 113
Query: 106 VMVRWLSRFFHYLDRYFI------ARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLI 159
+ L+ YL+R+++ R+ + + + L +RD ++ LN +V +AV+ LI
Sbjct: 114 FSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLNKQVTNAVLKLI 173
Query: 160 DQEREGEQIDRALLKNVLDIFVEIGMGQMD---------YYENDFETAMLKDTAAYYSRK 210
++ER GE I+ L+ V+ +VE+G+ + D Y+ FE+ L DT +Y+R+
Sbjct: 174 EKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRE 233
Query: 211 ASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKE 270
++ ++ ++ +YM KAE L E+ RV YLH S++ +L K + L+ + LE
Sbjct: 234 STEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKH----LEIF 289
Query: 271 HSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKK 330
H+ LL DK EDL RM+ L S+I GL + + + H+ +G A ++ +AA N
Sbjct: 290 HTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALNDP 349
Query: 331 AEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCN 382
+++V+ V+++H KY A V F N F +L +A F N
Sbjct: 350 -----------KMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFIN 390
>pdb|4AP2|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
Length = 410
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 105/397 (26%), Positives = 195/397 (49%), Gaps = 32/397 (8%)
Query: 1 MTMNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHD 60
MTM+E+ + W+ LKN ++ + S + LY Y M H
Sbjct: 23 MTMDEKYVNSI---WDL-------LKNAIQEIQRKNNSGLSFEELYRNAYTMVL----HK 68
Query: 61 YSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDR 120
+ ++LY RE E++ + V + + L+ L + W++H+ + + Y+DR
Sbjct: 69 HGEKLYTGLREVVTEHLINKVREDVLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDR 128
Query: 121 YFIARRSLPPLNEVGLTCFRDLV--YTELNGKVRDAVITLIDQEREGEQIDRALLKNVLD 178
++ + ++ + +GL FRD V Y + +R ++ +I +ER+GE +DR ++N
Sbjct: 129 VYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQ 188
Query: 179 IFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRV 238
+ + +G+ YE DFE L+ +A ++ ++ ++ E+S Y+ K E + E +RV
Sbjct: 189 MLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERV 248
Query: 239 SHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPR 298
H L S+E +++ V+ EL+S + ++E E+SG +L++ K EDL M++LFS++P
Sbjct: 249 MHCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPN 308
Query: 299 GLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAY 358
GL + ++ +G ALV +E+ + R GL +L ++ +
Sbjct: 309 GLKTMCECMSSYLREQGKALV--SEEGEGKNPVDYRQ--GLD---------DLKSRFDRF 355
Query: 359 VNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLA 395
+ + F N LF +++ FE F N S S E LA
Sbjct: 356 LLESFNNDRLFKQTIAGDFEYFLN---LNSRSPEYLA 389
>pdb|4APF|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 388
Score = 153 bits (386), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 105/397 (26%), Positives = 195/397 (49%), Gaps = 32/397 (8%)
Query: 1 MTMNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHD 60
MTM+E+ + W+ LKN ++ + S + LY Y M H
Sbjct: 1 MTMDEKYVNSI---WDL-------LKNAIQEIQRKNNSGLSFEELYRNAYTMVL----HK 46
Query: 61 YSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDR 120
+ ++LY RE E++ + V + + L+ L + W++H+ + + Y+DR
Sbjct: 47 HGEKLYTGLREVVTEHLINKVREDVLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDR 106
Query: 121 YFIARRSLPPLNEVGLTCFRDLV--YTELNGKVRDAVITLIDQEREGEQIDRALLKNVLD 178
++ + ++ + +GL FRD V Y + +R ++ +I +ER+GE +DR ++N
Sbjct: 107 VYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQ 166
Query: 179 IFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRV 238
+ + +G+ YE DFE L+ +A ++ ++ ++ E+S Y+ K E + E +RV
Sbjct: 167 MLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERV 226
Query: 239 SHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPR 298
H L S+E +++ V+ EL+S + ++E E+SG +L++ K EDL M++LFS++P
Sbjct: 227 MHCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPN 286
Query: 299 GLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAY 358
GL + ++ +G ALV +E+ + R GL +L ++ +
Sbjct: 287 GLKTMCECMSSYLREQGKALV--SEEGEGKNPVDYRQ--GLD---------DLKSRFDRF 333
Query: 359 VNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLA 395
+ + F N LF +++ FE F N S S E LA
Sbjct: 334 LLESFNNDRLFKQTIAGDFEYFLN---LNSRSPEYLA 367
>pdb|4F52|A Chain A, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|C Chain C, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 282
Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 161/279 (57%), Gaps = 10/279 (3%)
Query: 386 AGSSSAELLATFCDNILKKGGSEKLSDEA-IEEMLEKVVKLLAYISDKDLFAEFYRKKLA 444
+ S S E LA +CD++LKK S K +EA +E+ L +V++ I DKD+F +FY K LA
Sbjct: 6 SSSKSPEELARYCDSLLKK--SSKNPEEAELEDTLNQVMEKFKKIEDKDVFQKFYAKMLA 63
Query: 445 RRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNA 504
+RL+ SA+DD E S+++KLKQ CG ++TSK++ M D+ ++++ F+++L+N+
Sbjct: 64 KRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPL 123
Query: 505 NPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCN 564
+ +D ++ VL++G WP +S LP+E+ + + F FY ++ RKLTW+Y L
Sbjct: 124 D--LDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGE 181
Query: 565 LLGK-FESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKY 623
L+ F++R T L +T+Q + LL +N+ D + ++ + D + ++L L +K
Sbjct: 182 LVTNCFKNRYT-LQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKL 240
Query: 624 KIL---NKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLP 659
+L N + + P + + +K R+ I +P
Sbjct: 241 LVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVP 279
>pdb|4EOZ|B Chain B, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|D Chain D, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 364
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/360 (25%), Positives = 172/360 (47%), Gaps = 19/360 (5%)
Query: 25 LKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPS 84
LKN ++ + S + LY Y H + ++LY RE E++ + V
Sbjct: 20 LKNAIQEIQRKNNSGLSFEELYRNAYTXVL----HKHGEKLYTGLREVVTEHLINKVRED 75
Query: 85 IREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLV- 143
+ + L+ L + W++H+ + Y DR ++ + ++ + +GL FRD V
Sbjct: 76 VLNSLNNNFLQTLNQAWNDHQTAXVXIRDILXYXDRVYVQQNNVENVYNLGLIIFRDQVV 135
Query: 144 -YTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKD 202
Y + +R ++ I +ER+GE +DR ++N +G+ YE DFE L+
Sbjct: 136 RYGCIRDHLRQTLLDXIARERKGEVVDRGAIRNACQXLXILGLEGRSVYEEDFEAPFLEX 195
Query: 203 TAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVY 262
+A ++ ++ ++ E+S Y+ K E + E +RV H L S+E +++ V+ EL+S +
Sbjct: 196 SAEFFQXESQKFLAENSASVYIKKVEARINEEIERVXHCLDKSTEEPIVKVVERELISKH 255
Query: 263 ANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLA 322
++E E+SG L++ K EDL ++LFS++P GL ++ +G ALV +
Sbjct: 256 XKTIVEXENSGLVHXLKNGKTEDLGCXYKLFSRVPNGLKTXCECXSSYLREQGKALV--S 313
Query: 323 EDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCN 382
E+ + R GL +L ++ ++ + F N LF +++ FE F N
Sbjct: 314 EEGEGKNPVDYRQ--GLD---------DLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLN 362
>pdb|3DPL|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 382
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 117/382 (30%), Positives = 186/382 (48%), Gaps = 28/382 (7%)
Query: 388 SSSAELLATFCDNILKKGG-SEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARR 446
S E LA +CD +L+K S+KL+ E IE L++V+K L Y+ +KD+F +++ L RR
Sbjct: 4 SKCPEELANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRR 63
Query: 447 LLFDKSANDDHERSILTKLKQ-QCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNAN 505
L+ D SA+ + E +++ L++ + +K+ M D+ ++ + +F+E NN A
Sbjct: 64 LILDISADSEIEENMVEWLREVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLAL 123
Query: 506 PGIDLTVTVLTTGFWP--SYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTC 563
P + + +L G W S K F ++LP E+ + EFY+ RKL W + +
Sbjct: 124 PADSVNIKILNAGAWSRSSEKVF-VSLPTELEDLIPEVEEFYKKNHSGRKLHWHHLMSNG 182
Query: 564 NLLGKFESRTTELIVTTYQASALLLFNSSDR--LSYSEIMTQLNLSDDDVVRLLHSLSC- 620
+ K E +L VTT+Q + L +N R +S+ + L D ++ R L SL
Sbjct: 183 IITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAF 242
Query: 621 --AKYKILNKEPNTKTISPTDH-----FEFNSKFT-------DKMRRI----KIPLPPXX 662
K ++L EP SP D F N +F+ K +I ++ L
Sbjct: 243 PKLKRQVLLYEPQVN--SPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTER 300
Query: 663 XXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIE 722
R +I++IMK RK + + QL E VE L MF P K IK++IE
Sbjct: 301 MREEENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIE 360
Query: 723 DLITRDYLERDKSNPNMFRYLA 744
LI Y+ RD+S+ N F Y+A
Sbjct: 361 WLIEHKYIRRDESDINTFIYMA 382
>pdb|3DQV|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|D Chain D, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 382
Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 115/382 (30%), Positives = 181/382 (47%), Gaps = 28/382 (7%)
Query: 388 SSSAELLATFCDNILKKGG-SEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARR 446
S E LA +CD +L+K S+KL+ E IE L++V+K L Y+ +KD+F +++ L RR
Sbjct: 4 SKCPEELANYCDXLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFXRYHKAHLTRR 63
Query: 447 LLFDKSANDDHERSILTKLKQ-QCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNAN 505
L+ D SA+ + E + + L++ + +K+ D+ ++ + +F+E NN A
Sbjct: 64 LILDISADSEIEENXVEWLREVGXPADYVNKLARXFQDIKVSEDLNQAFKEXHKNNKLAL 123
Query: 506 PGIDLTVTVLTTGFWP--SYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTC 563
P + + +L G W S K F ++LP E+ + EFY+ RKL W +
Sbjct: 124 PADSVNIKILNAGAWSRSSEKVF-VSLPTELEDLIPEVEEFYKKNHSGRKLHWHHLXSNG 182
Query: 564 NLLGKFESRTTELIVTTYQASALLLFNSSDR--LSYSEIMTQLNLSDDDVVRLLHSLSC- 620
+ K E +L VTT+Q + L +N R +S+ + L D ++ R L SL
Sbjct: 183 IITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAF 242
Query: 621 --AKYKILNKEPNTKTISPTDH-----FEFNSKFT-------DKMRRI----KIPLPPXX 662
K ++L EP SP D F N +F+ K +I ++ L
Sbjct: 243 PKLKRQVLLYEPQVN--SPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTER 300
Query: 663 XXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIE 722
R +I++I K RK + + QL E VE L F P K IK++IE
Sbjct: 301 XREEENEGIVQLRILRTQEAIIQIXKXRKKISNAQLQTELVEILKNXFLPQKKXIKEQIE 360
Query: 723 DLITRDYLERDKSNPNMFRYLA 744
LI Y+ RD+S+ N F Y A
Sbjct: 361 WLIEHKYIRRDESDINTFIYXA 382
>pdb|4A64|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
pdb|4A64|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
pdb|4A64|C Chain C, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
pdb|4A64|D Chain D, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
Length = 354
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 188/364 (51%), Gaps = 32/364 (8%)
Query: 24 KLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLP 83
KLK +E + + LY + N+C+ K S LY + R+ E++I + +
Sbjct: 16 KLKEAVEAIQNSTSIKYNLEELYQAVENLCSYK----ISANLYKQLRQICEDHIKAQIHQ 71
Query: 84 SIREKHDEFM-LRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRS-LPPLNEVGLTCFRD 141
+ D + L+++ + W NH + + F +LDR ++ + S LP + ++GL FR
Sbjct: 72 FREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRA 131
Query: 142 LVYTE--LNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAM 199
+ ++ + K D ++ LI++ER GE IDR+LL+++L + ++ + Y++ FE
Sbjct: 132 HIISDQKVQNKTIDGILLLIERERNGEAIDRSLLRSLLSMLSDLQI-----YQDSFEQRF 186
Query: 200 LKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELL 259
L++T Y+ + + E P+Y+ + L+ E DR+ YL +++ L+ V+ +LL
Sbjct: 187 LEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKSLIATVEKQLL 246
Query: 260 SVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALV 319
+ +L+K G + LL +++++DLS +++LFS++ G+ + + +++ A G+ +V
Sbjct: 247 GEHLTAILQK---GLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIV 303
Query: 320 KLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEV 379
E +++ +++ + DK ++ CF + F ++KEAFE
Sbjct: 304 INPE----------------KDKTMRQELDDFKDKVDHIIDICFLKNEKFINAMKEAFET 347
Query: 380 FCNK 383
F NK
Sbjct: 348 FINK 351
>pdb|2WZK|A Chain A, Structure Of The Cul5 N-Terminal Domain At 2.05a
Resolution
Length = 391
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 76/395 (19%), Positives = 174/395 (44%), Gaps = 32/395 (8%)
Query: 3 MNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYS 62
+ + ++ E W+FM + KL L + + + + L++ ++ +C S
Sbjct: 7 LKNKGSLQFEDKWDFMHPIVLKL------LRQESVTKQQWFDLFSDVHAVCLWDDKG--S 58
Query: 63 QQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYF 122
+++ +E E+I + + D +L+ + W L + F L+
Sbjct: 59 SKIHQALKEDILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEVTL 118
Query: 123 IARRSLPP--------LNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLK 174
+ ++S + ++ L + + +++ + +++D+ + L+ ER GE D L+
Sbjct: 119 LGKQSSNKKSNMEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVI 178
Query: 175 NVLDIFVEIGMG---QMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECL 231
V + +V + ++ Y ++FE A L T +Y +A +++ ++ +YM A+ L
Sbjct: 179 GVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKL 238
Query: 232 KREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFR 291
K E+ R YL + E +E + ++ E + C +++ ++ E L MF
Sbjct: 239 KEEEKRALRYLETRRECNSVEALMECCVNALVTSFKETILAECQGMIKRNETEKLHLMFS 298
Query: 292 LFSKIPRGLDPVSNIFKQHVTAEGTA-LVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIE 350
L K+P G++P+ ++H+ + G A +V AE ++ +EK + ++
Sbjct: 299 LMDKVPNGIEPMLKDLEEHIISAGLADMVAAAETITTD--SEK----------YREQLDT 346
Query: 351 LHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGV 385
L +++ V + FQ+ F + +A++ N
Sbjct: 347 LFNRFSKLVKEAFQDDPRFLTARDKAYKAVVNDAT 381
>pdb|2DO7|A Chain A, Solution Structure Of The Winged Helix-Turn-Helix Motif Of
Human Cul-4b
Length = 101
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Query: 675 RRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 734
R+Y IDA+IVRIMK RK L H LV E QL KP +KKRIE LI RDY+ERDK
Sbjct: 28 RQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKP--ADLKKRIESLIDRDYMERDK 85
Query: 735 SNPNMFRYLA 744
NPN + Y+A
Sbjct: 86 ENPNQYNYIA 95
>pdb|3TDU|C Chain C, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDU|D Chain D, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDZ|C Chain C, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
pdb|3TDZ|D Chain D, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
Length = 77
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 45/70 (64%)
Query: 675 RRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 734
R+ I A+IVRIMK RKVL HQQL+ E + QL FKP IKK I+ LI ++YLER
Sbjct: 8 RKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVD 67
Query: 735 SNPNMFRYLA 744
+ + YLA
Sbjct: 68 GEKDTYSYLA 77
>pdb|1IUY|A Chain A, Solution Structure Of The Cullin-3 Homologue
Length = 92
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 45/70 (64%)
Query: 675 RRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 734
R++ I+A+IVRIMKSRK + H LV E +QL F P IKKRIE LI R+YL R
Sbjct: 23 RKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTP 82
Query: 735 SNPNMFRYLA 744
+ ++ Y+A
Sbjct: 83 EDRKVYTYVA 92
>pdb|3O6B|B Chain B, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|D Chain D, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|F Chain F, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|H Chain H, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|J Chain J, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
Length = 76
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 675 RRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 734
R+ ++A IVRIMK+++ L H LV EC+ Q + F +K+ I+ LI + YL+R
Sbjct: 8 RQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGD 67
Query: 735 SNPNMFRYLA 744
+ + YLA
Sbjct: 68 DGES-YAYLA 76
>pdb|3O2P|E Chain E, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb)
Length = 88
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 675 RRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 734
R+ ++A IVRIMK+++ L H LV EC+ Q + F +K+ I+ LI + YL+R
Sbjct: 20 RQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGD 79
Query: 735 SNPNMFRYLA 744
+ + YLA
Sbjct: 80 DGES-YAYLA 88
>pdb|3CJM|A Chain A, Crystal Structure Of Putative Beta-Lactamase (Np_815223.1)
From Enterococcus Faecalis V583 At 1.50 A Resolution
Length = 282
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 32 LPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRES 72
+ EPQFSSED +++ +Y KP DY Q +YD ++S
Sbjct: 171 IEEPQFSSEDALVILQKLYTEKATKP--DY-QAIYDSXKQS 208
>pdb|2QJ3|A Chain A, Mycobacterium Tuberculosis Fabd
pdb|2QJ3|B Chain B, Mycobacterium Tuberculosis Fabd
Length = 322
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 19/96 (19%)
Query: 270 EHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEG--TALVKLAEDAAS 327
E +G A+L D+ E LSR+ +L L P + + A G TAL KLAED +
Sbjct: 147 EPTGMSAVLGGDETEVLSRLEQLD------LVPANRNAAGQIVAAGRLTALEKLAEDPPA 200
Query: 328 NKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCF 363
+ V G H +++A D F
Sbjct: 201 KARVRALGVAG-----------AFHTEFMAPALDGF 225
>pdb|3CW1|A Chain A, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|H Chain H, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|I Chain I, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|J Chain J, Crystal Structure Of Human Spliceosomal U1 Snrnp
Length = 174
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 688 KSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNP 737
KS K+L H + C+ Q GR+F FKA K + +LI D E K P
Sbjct: 5 KSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHM-NLILCDCDEFRKIKP 53
>pdb|2QC3|A Chain A, Crystal Structure Of Mcat From Mycobacterium Tuberculosis
Length = 303
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 19/96 (19%)
Query: 270 EHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEG--TALVKLAEDAAS 327
E +G A+L D+ E LSR+ +L L P + + A G TAL KLAED +
Sbjct: 128 EPTGMSAVLGGDETEVLSRLEQL------DLVPANRNAAGQIVAAGRLTALEKLAEDPPA 181
Query: 328 NKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCF 363
+ V G H +++A D F
Sbjct: 182 KARVRALGVAG-----------AFHTEFMAPALDGF 206
>pdb|3PGW|B Chain B, Crystal Structure Of Human U1 Snrnp
pdb|3PGW|Q Chain Q, Crystal Structure Of Human U1 Snrnp
Length = 231
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 688 KSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNP 737
KS K+L H + C+ Q GR+F FKA K + +LI D E K P
Sbjct: 5 KSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHM-NLILCDCDEFRKIKP 53
>pdb|1GGZ|A Chain A, Crystal Structure Of The Calmodulin-Like Protein (Hclp)
From Human Epithelial Cells
Length = 148
Score = 29.3 bits (64), Expect = 8.7, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 6/49 (12%)
Query: 371 KSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEML 419
+ ++EAF VF G S+AEL +++ + G EKLSDE ++EM+
Sbjct: 83 EEIREAFRVFDKDGNGFVSAAEL-----RHVMTRLG-EKLSDEEVDEMI 125
>pdb|1QS7|A Chain A, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
pdb|1QS7|C Chain C, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 145
Score = 29.3 bits (64), Expect = 9.3, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 371 KSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEK 421
+ LKEAF VF G S+AEL +++ G EKL+DE ++EM+ +
Sbjct: 80 EELKEAFRVFDKDGNGFISAAEL-----RHVMTNLG-EKLTDEEVDEMIRE 124
>pdb|1QTX|A Chain A, The 1.65 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 28.9 bits (63), Expect = 9.5, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 371 KSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEK 421
+ LKEAF VF G S+AEL +++ G EKL+DE ++EM+ +
Sbjct: 83 EELKEAFRVFDKDGNGFISAAEL-----RHVMTNLG-EKLTDEEVDEMIRE 127
>pdb|1VRK|A Chain A, The 1.9 Angstrom Structure Of E84k-Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 28.9 bits (63), Expect = 9.7, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 371 KSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEK 421
+ LKEAF VF G S+AEL +++ G EKL+DE ++EM+ +
Sbjct: 83 EKLKEAFRVFDKDGNGFISAAEL-----RHVMTNLG-EKLTDEEVDEMIRE 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,948,178
Number of Sequences: 62578
Number of extensions: 857485
Number of successful extensions: 2816
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2702
Number of HSP's gapped (non-prelim): 43
length of query: 744
length of database: 14,973,337
effective HSP length: 106
effective length of query: 638
effective length of database: 8,340,069
effective search space: 5320964022
effective search space used: 5320964022
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)