BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004584
(744 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 126/381 (33%), Positives = 198/381 (51%), Gaps = 25/381 (6%)
Query: 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG 280
IGG + A I + + P + +G+K +G+LLYGPPGTGKTL+AR + G
Sbjct: 206 IGGCRKQLAQI-KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE-TG 263
Query: 281 MEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGS 340
++NGPE++SK GE+E N+R F +AE + +I DE+DAI R
Sbjct: 264 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA--------IIFIDELDAIAPKREK 315
Query: 341 TRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPD 400
T V IV+QLLT +DG++ +V+++ TNR + +D AL R GR + +V+I +PD
Sbjct: 316 TH--GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 373
Query: 401 ENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSM 460
GRL+ILQIHT MK LA DV+L+++A T + GA+L + A A+ +++ +
Sbjct: 374 ATGRLEILQIHTKNMK----LADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDL 429
Query: 461 DDLT-KPVDEE---SIKVTMDDFLHALYEIVPAFGAST----DDLERSRLNGMVDCGDRH 512
DL + +D E S+ VTMDDF AL + P+ T + + G+ D
Sbjct: 430 IDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKREL 489
Query: 513 KHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMI 572
+ + Q + ++ +P L GP G GKT LA + F+ I E ++
Sbjct: 490 QELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE-LL 548
Query: 573 GLHESTKCAQIVKVFEDAYKS 593
+ A + ++F+ A ++
Sbjct: 549 TMWFGESEANVREIFDKARQA 569
Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 137/239 (57%), Gaps = 25/239 (10%)
Query: 221 IGGLSAEFADIFRRAFASRVFP---PHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKM 277
IGGL D+ R +P P K G+ KG+L YGPPG GKTL+A+ I
Sbjct: 479 IGGLE----DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA-- 532
Query: 278 LNGMEPKIVN--GPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAIC 335
N + ++ GPE+L+ + GE+E N+R++F A Q+ V+ FDE+D+I
Sbjct: 533 -NECQANFISIKGPELLTMWFGESEANVREIFDKAR--------QAAPCVLFFDELDSIA 583
Query: 336 KSRGSTRDGTG-VHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQV 394
K+RG G D ++NQ+LT++DG+ + NV +IG TNR D++D A+LRPGRL+ +
Sbjct: 584 KARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLI 643
Query: 395 EISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFA 453
I LPDE R+ IL+ + K S +A DV+L+ LA T +SGA+L + + A A
Sbjct: 644 YIPLPDEKSRVAILKANLRK----SPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 698
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 125/381 (32%), Positives = 198/381 (51%), Gaps = 25/381 (6%)
Query: 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG 280
+GG + A I + + P + +G+K +G+LLYGPPGTGKTL+AR + G
Sbjct: 206 VGGCRKQLAQI-KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE-TG 263
Query: 281 MEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGS 340
++NGPE++SK GE+E N+R F +AE + +I DE+DAI R
Sbjct: 264 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA--------IIFIDELDAIAPKREK 315
Query: 341 TRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPD 400
T V IV+QLLT +DG++ +V+++ TNR + +D AL R GR + +V+I +PD
Sbjct: 316 TH--GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 373
Query: 401 ENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSM 460
GRL+ILQIHT MK LA DV+L+++A T + GA+L + A A+ +++ +
Sbjct: 374 ATGRLEILQIHTKNMK----LADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDL 429
Query: 461 DDLT-KPVDEE---SIKVTMDDFLHALYEIVPAFGAST----DDLERSRLNGMVDCGDRH 512
DL + +D E S+ VTMDDF AL + P+ T + + G+ D
Sbjct: 430 IDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKREL 489
Query: 513 KHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMI 572
+ + Q + ++ +P L GP G GKT LA + F+ I E ++
Sbjct: 490 QELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE-LL 548
Query: 573 GLHESTKCAQIVKVFEDAYKS 593
+ A + ++F+ A ++
Sbjct: 549 TMWFGESEANVREIFDKARQA 569
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 137/239 (57%), Gaps = 25/239 (10%)
Query: 221 IGGLSAEFADIFRRAFASRVFP---PHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKM 277
IGGL D+ R +P P K G+ KG+L YGPPG GKTL+A+ I
Sbjct: 479 IGGLE----DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA-- 532
Query: 278 LNGMEPKIVN--GPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAIC 335
N + ++ GPE+L+ + GE+E N+R++F A Q+ V+ FDE+D+I
Sbjct: 533 -NECQANFISIKGPELLTMWFGESEANVREIFDKAR--------QAAPCVLFFDELDSIA 583
Query: 336 KSRGSTRDGTG-VHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQV 394
K+RG G D ++NQ+LT++DG+ + NV +IG TNR D++D A+LRPGRL+ +
Sbjct: 584 KARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLI 643
Query: 395 EISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFA 453
I LPDE R+ IL+ + K S +A DV+L+ LA T +SGA+L + + A A
Sbjct: 644 YIPLPDEKSRVAILKANLRK----SPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 698
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 169 bits (428), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/285 (38%), Positives = 164/285 (57%), Gaps = 23/285 (8%)
Query: 212 KEFNLQSLG---IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKT 268
+E +L +G IGG + A I + + P + +G+K +G+LLYGPPGTGKT
Sbjct: 194 EEESLNEVGYDDIGGCRKQLAQI-KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252
Query: 269 LMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIF 328
L+AR + G ++NGPE++SK GE+E N+R F +AE + +I
Sbjct: 253 LIARAVANE-TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA--------IIFI 303
Query: 329 DEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPG 388
DE+DAI R T V IV+QLLT +DG++ +V+++ TNR + +D AL R G
Sbjct: 304 DELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG 361
Query: 389 RLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKS 448
R + +V+I +PD GRL+ILQIHT MK LA DV+L+++A T + GA+L +
Sbjct: 362 RFDREVDIGIPDATGRLEILQIHTKNMK----LADDVDLEQVANETHGHVGADLAALCSE 417
Query: 449 AVSFALNRQLSMDDLT-KPVDEE---SIKVTMDDFLHALYEIVPA 489
A A+ +++ + DL + +D E S+ VTMDDF AL + P+
Sbjct: 418 AALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS 462
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 169 bits (427), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/285 (38%), Positives = 164/285 (57%), Gaps = 23/285 (8%)
Query: 212 KEFNLQSLG---IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKT 268
+E +L +G IGG + A I + + P + +G+K +G+LLYGPPGTGKT
Sbjct: 194 EEESLNEVGYDDIGGCRKQLAQI-KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252
Query: 269 LMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIF 328
L+AR + G ++NGPE++SK GE+E N+R F +AE + +I
Sbjct: 253 LIARAVANE-TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA--------IIFI 303
Query: 329 DEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPG 388
DE+DAI R T V IV+QLLT +DG++ +V+++ TNR + +D AL R G
Sbjct: 304 DELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG 361
Query: 389 RLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKS 448
R + +V+I +PD GRL+ILQIHT MK LA DV+L+++A T + GA+L +
Sbjct: 362 RFDREVDIGIPDATGRLEILQIHTKNMK----LADDVDLEQVANETHGHVGADLAALCSE 417
Query: 449 AVSFALNRQLSMDDLT-KPVDEE---SIKVTMDDFLHALYEIVPA 489
A A+ +++ + DL + +D E S+ VTMDDF AL + P+
Sbjct: 418 AALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS 462
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 169 bits (427), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 109/285 (38%), Positives = 164/285 (57%), Gaps = 23/285 (8%)
Query: 212 KEFNLQSLG---IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKT 268
+E +L +G IGG + A I + + P + +G+K +G+LLYGPPGTGKT
Sbjct: 194 EEESLNEVGYDDIGGCRKQLAQI-KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252
Query: 269 LMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIF 328
L+AR + G ++NGPE++SK GE+E N+R F +AE + +I
Sbjct: 253 LIARAVANE-TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA--------IIFI 303
Query: 329 DEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPG 388
DE+DAI R T V IV+QLLT +DG++ +V+++ TNR + +D AL R G
Sbjct: 304 DELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG 361
Query: 389 RLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKS 448
R + +V+I +PD GRL+ILQIHT MK LA DV+L+++A T + GA+L +
Sbjct: 362 RFDREVDIGIPDATGRLEILQIHTKNMK----LADDVDLEQVANETHGHVGADLAALCSE 417
Query: 449 AVSFALNRQLSMDDLT-KPVDEE---SIKVTMDDFLHALYEIVPA 489
A A+ +++ + DL + +D E S+ VTMDDF AL + P+
Sbjct: 418 AALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS 462
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/281 (38%), Positives = 162/281 (57%), Gaps = 23/281 (8%)
Query: 212 KEFNLQSLG---IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKT 268
+E +L +G +GG + A I + + P + +G+K +G+LLYGPPGTGKT
Sbjct: 194 EEESLNEVGYDDVGGCRKQLAQI-KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252
Query: 269 LMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIF 328
L+AR + G ++NGPE++SK GE+E N+R F +AE + +I
Sbjct: 253 LIARAVANE-TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA--------IIFI 303
Query: 329 DEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPG 388
DE+DAI R T V IV+QLLT +DG++ +V+++ TNR + +D AL R G
Sbjct: 304 DELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG 361
Query: 389 RLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKS 448
R + +V+I +PD GRL+ILQIHT MK LA DV+L+++A T + GA+L +
Sbjct: 362 RFDREVDIGIPDATGRLEILQIHTKNMK----LADDVDLEQVANETHGHVGADLAALCSE 417
Query: 449 AVSFALNRQLSMDDLT-KPVDEE---SIKVTMDDFLHALYE 485
A A+ +++ + DL + +D E S+ VTMDDF AL +
Sbjct: 418 AALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ 458
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 159 bits (403), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 104/274 (37%), Positives = 151/274 (55%), Gaps = 28/274 (10%)
Query: 215 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQI 274
N++ IGGL + +I R + P + K+GI+ KG+LLYGPPGTGKTL+A+ +
Sbjct: 13 NVRYEDIGGLEKQMQEI-REVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAV 71
Query: 275 GKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAI 334
N ++V G E++ KF+GE ++D+F A+ + +I DEIDAI
Sbjct: 72 ATETNATFIRVV-GSELVKKFIGEGASLVKDIFKLAKEKAPS--------IIFIDEIDAI 122
Query: 335 CKSRGSTRDGTGVH-DSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQ 393
R G + QLL ++DG ++ +V +IG TNR D+LD A+LRPGR +
Sbjct: 123 AAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRI 182
Query: 394 VEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFA 453
+E+ PDE GRL+IL+IHT KM LA DVNL+E+A T+ GAEL+ + A
Sbjct: 183 IEVPAPDEKGRLEILKIHTRKMN----LAEDVNLEEIAKMTEGCVGAELKAICTEA---G 235
Query: 454 LNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIV 487
+N + D VTMDDF A+ +I+
Sbjct: 236 MNAIRELRDY----------VTMDDFRKAVEKIM 259
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAE 569
P LL GP G+GKT LA +++ F++++ +E
Sbjct: 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSE 86
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 127/209 (60%), Gaps = 18/209 (8%)
Query: 248 KLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVN--GPEVLSKFVGETEKNIRD 305
K G+ KG+L YGPPG GKTL+A+ I N + ++ GPE+L+ + GE+E N+R+
Sbjct: 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIA---NECQANFISIKGPELLTMWFGESEANVRE 99
Query: 306 LFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTG-VHDSIVNQLLTKIDGVES 364
+F A Q+ V+ FDE+D+I K+RG G D ++NQ+LT++DG+ +
Sbjct: 100 IFDKAR--------QAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151
Query: 365 LNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPD 424
NV +IG TNR D++D A+LRPGRL+ + I LPDE R+ IL+ + K S +A D
Sbjct: 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK----SPVAKD 207
Query: 425 VNLQELAARTKNYSGAELEGVAKSAVSFA 453
V+L+ LA T +SGA+L + + A A
Sbjct: 208 VDLEFLAKMTNGFSGADLTEICQRACKLA 236
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/240 (39%), Positives = 131/240 (54%), Gaps = 6/240 (2%)
Query: 476 MDDFLHAL-YEIVPAFGASTDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPL 534
M DFL +L +I PAFG + +D +NG++ GD + LLV+Q K S +PL
Sbjct: 4 MGDFLASLEQDIKPAFGTNQEDYASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPL 63
Query: 535 VTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSP 594
V+ LLEGP SGKTALAA +S+FPF+KI S + MIG E+ KC + K+F+DAYKS
Sbjct: 64 VSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQ 123
Query: 595 XXXXXXXXXXXXXXYVPIGPRFSNIISQTMXXXXXXXXXXXXXXXXIGTTSEVSFLDSVG 654
YVPIGPRFSN++ Q + IGTTS L +
Sbjct: 124 LSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEME 183
Query: 655 ICDAFSVTYHVPTLKT-DDAKKVLKQLNVFAEEDVDSASEALND----MPIKKLYMLIEM 709
+ +AFS T HVP + T + + L+ L F +++ + ++ + + IKKL MLIEM
Sbjct: 184 MLNAFSTTIHVPNIATGEQLLEALELLGNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEM 243
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/272 (35%), Positives = 150/272 (55%), Gaps = 36/272 (13%)
Query: 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG 280
+GGL+ + +I + V P + LGI KG++LYGPPGTGKTL+AR + +
Sbjct: 150 VGGLTKQIKEI-KEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC 208
Query: 281 MEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGS 340
+ V+G E++ K++GE + +R+LF A + +I DEID+I GS
Sbjct: 209 KFIR-VSGAELVQKYIGEGSRMVRELFVMAREHAPS--------IIFMDEIDSI----GS 255
Query: 341 TR-DGTGVHDSIVN----QLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVE 395
TR +G+G DS V +LL ++DG E+ N+ +I TNR D+LD ALLRPGR++ ++E
Sbjct: 256 TRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIE 315
Query: 396 ISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALN 455
P R +IL+IH+ KM L +NL+++A + SGA+++GV A +AL
Sbjct: 316 FPPPSVAARAEILRIHSRKMN----LTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALR 371
Query: 456 RQLSMDDLTKPVDEESIKVTMDDFLHALYEIV 487
E I VT +DF A+ +++
Sbjct: 372 -------------ERRIHVTQEDFELAVGKVM 390
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 538 LLEGPSGSGKTALAATAGIDSDFPFVKIISAE 569
+L GP G+GKT LA +D F+++ AE
Sbjct: 186 ILYGPPGTGKTLLARAVAHHTDCKFIRVSGAE 217
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 142 bits (359), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 92/256 (35%), Positives = 145/256 (56%), Gaps = 26/256 (10%)
Query: 220 GIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN 279
GIGGL+ + ++ R + P + ++GIK KG+LLYGPPGTGKTL+A+ + +
Sbjct: 182 GIGGLTEQIREL-REVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG 240
Query: 280 GMEPKIVNGPE--VLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKS 337
+ P ++ K++GE+ + IR++FA A+ + + +I DE+DAI
Sbjct: 241 A---NFIFSPASGIVDKYIGESARIIREMFAYAK--------EHEPCIIFMDEVDAIGGR 289
Query: 338 RGSTRDGTGVHDSI---VNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQV 394
R S +GT I + +LLT++DG ++L +I TNR D LD ALLRPGRL+ +V
Sbjct: 290 RFS--EGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKV 347
Query: 395 EISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFAL 454
EI LP+E GRL+I +IHT K+K+ + + + + ++GA++ A A FA+
Sbjct: 348 EIPLPNEAGRLEIFKIHTAKVKKTG----EFDFEAAVKMSDGFNGADIRNCATEAGFFAI 403
Query: 455 ---NRQLSMDDLTKPV 467
++ DDL K V
Sbjct: 404 RDDRDHINPDDLMKAV 419
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 142 bits (359), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 126/219 (57%), Gaps = 14/219 (6%)
Query: 243 PHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKN 302
P LG+ G+LL GPPG GKTL+A+ + +G+ V GPE+L+ +VGE+E+
Sbjct: 33 PDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANE-SGLNFISVKGPELLNMYVGESERA 91
Query: 303 IRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV 362
+R +F A+N S VI FDE+DA+C R G V +VNQLLT++DG+
Sbjct: 92 VRQVFQRAKN--------SAPCVIFFDEVDALCPRRSDRETGASVR--VVNQLLTEMDGL 141
Query: 363 ESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLA 422
E+ V ++ TNR D++D A+LRPGRL+ + + LP RL IL+ T K L
Sbjct: 142 EARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT-KNGTKPPLD 200
Query: 423 PDVNLQELAA--RTKNYSGAELEGVAKSAVSFALNRQLS 459
DVNL+ +A R Y+GA+L + + A AL ++++
Sbjct: 201 ADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA 239
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 142 bits (358), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 89/230 (38%), Positives = 125/230 (54%), Gaps = 5/230 (2%)
Query: 485 EIVPAFGASTDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSG 544
+I PAFG + +D +NG++ GD + LLV+Q K S +PLV+ LLEGP
Sbjct: 15 DIKPAFGTNQEDYASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPH 74
Query: 545 SGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPXXXXXXXXXX 604
SGKTALAA +S+FPF+KI S + MIG E+ KC + K+F+DAYKS
Sbjct: 75 SGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIE 134
Query: 605 XXXXYVPIGPRFSNIISQTMXXXXXXXXXXXXXXXXIGTTSEVSFLDSVGICDAFSVTYH 664
YVPIGPRFSN++ Q + IGTTS L + + +AFS T H
Sbjct: 135 RLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIH 194
Query: 665 VPTLKT-DDAKKVLKQLNVFAEEDVDSASEALND----MPIKKLYMLIEM 709
VP + T + + L+ L F +++ + ++ + + IKKL MLIEM
Sbjct: 195 VPNIATGEQLLEALELLGNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEM 244
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 129/238 (54%), Gaps = 21/238 (8%)
Query: 221 IGGLSAEFADIFRRAFASRVFPPHVTSK---LGIKHVKGMLLYGPPGTGKTLMARQIGKM 277
+GGL + ++ + V P K +GI+ KG L+YGPPGTGKTL+AR
Sbjct: 183 VGGLDKQIEELVE----AIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ 238
Query: 278 LNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKS 337
N K+ P+++ ++GE K +RD FA A+ T +I DE+DAI
Sbjct: 239 TNATFLKLA-APQLVQMYIGEGAKLVRDAFALAKEKAPT--------IIFIDELDAIGTK 289
Query: 338 R-GSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEI 396
R S + G + +LL ++DG S + V ++ TNR D+LD ALLR GRL+ ++E
Sbjct: 290 RFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEF 349
Query: 397 SLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFAL 454
LP E+ R QILQIH+ KM + D+N QELA T ++GA+L+ V A AL
Sbjct: 350 PLPSEDSRAQILQIHSRKMTTDD----DINWQELARSTDEFNGAQLKAVTVEAGMIAL 403
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 138 bits (348), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 130/237 (54%), Gaps = 29/237 (12%)
Query: 243 PHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI----VNGPEVLSKFVGE 298
P KLG K KG+L+ GPPGTGKTL+A+ I E K+ ++G + + FVG
Sbjct: 34 PSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG-----EAKVPFFTISGSDFVEMFVGV 88
Query: 299 TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHD---SIVNQL 355
+RD+F A+ ++ +I DEIDA+ + RG+ G HD +NQ+
Sbjct: 89 GASRVRDMFEQAK--------KAAPCIIFIDEIDAVGRQRGAGLGGG--HDEREQTLNQM 138
Query: 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKM 415
L ++DG E +++I TNR D+LD ALLRPGR + QV + LPD GR QIL++H ++
Sbjct: 139 LVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV 198
Query: 416 KENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFAL---NRQLSMDDLTKPVDE 469
LAPD++ +A T +SGA+L + A FA R +SM + K D+
Sbjct: 199 P----LAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDK 251
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Query: 494 TDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSK--GSPLVTCLLEGPSGSGKTALA 551
T+D ++ + C + + + + L E + K G L+ GP G+GKT LA
Sbjct: 3 TEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62
Query: 552 ATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKS 593
++ PF IS + + +++ +FE A K+
Sbjct: 63 KAIAGEAKVPFF-TISGSDFVEMFVGVGASRVRDMFEQAKKA 103
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 133/249 (53%), Gaps = 33/249 (13%)
Query: 243 PHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI-VNGPEVLSKFVGETEK 301
P +++G + KG+LL GPPGTGKTL+AR + N P ++G + + FVG
Sbjct: 38 PSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN--VPFFHISGSDFVELFVGVGAA 95
Query: 302 NIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDS---IVNQLLTK 358
+RDLFA A+ ++ DEIDA+ + RG+ G HD +NQLL +
Sbjct: 96 RVRDLFAQAKAHAPC--------IVFIDEIDAVGRHRGAGLGGG--HDEREQTLNQLLVE 145
Query: 359 IDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKEN 418
+DG +S ++++ TNR D+LD ALLRPGR + ++ + PD GR +IL+IHT N
Sbjct: 146 MDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTR----N 201
Query: 419 SFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDD 478
LA DVNL+ +A RT + GA+LE + A A E K+TM D
Sbjct: 202 KPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAR-------------EGRDKITMKD 248
Query: 479 FLHALYEIV 487
F A+ ++
Sbjct: 249 FEEAIDRVI 257
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 538 LLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDA 590
LL GP G+GKT LA +++ PF IS + L A++ +F A
Sbjct: 53 LLVGPPGTGKTLLARAVAGEANVPFFH-ISGSDFVELFVGVGAARVRDLFAQA 104
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 136 bits (342), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 132/249 (53%), Gaps = 33/249 (13%)
Query: 243 PHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI-VNGPEVLSKFVGETEK 301
P +++G + KG+LL GPPGTG TL+AR + N P ++G + + FVG
Sbjct: 38 PSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEAN--VPFFHISGSDFVELFVGVGAA 95
Query: 302 NIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDS---IVNQLLTK 358
+RDLFA A+ ++ DEIDA+ + RG+ G HD +NQLL +
Sbjct: 96 RVRDLFAQAKAHAPC--------IVFIDEIDAVGRHRGAGLGGG--HDEREQTLNQLLVE 145
Query: 359 IDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKEN 418
+DG +S ++++ TNR D+LD ALLRPGR + ++ + PD GR +IL+IHT N
Sbjct: 146 MDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTR----N 201
Query: 419 SFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDD 478
LA DVNL+ +A RT + GA+LE + A A E K+TM D
Sbjct: 202 KPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAR-------------EGRDKITMKD 248
Query: 479 FLHALYEIV 487
F A+ ++
Sbjct: 249 FEEAIDRVI 257
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 119/218 (54%), Gaps = 24/218 (11%)
Query: 243 PHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI----VNGPEVLSKFVGE 298
P + LG K KG+LL GPPGTGKTL+A+ + E + + G + FVG
Sbjct: 33 PERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG-----EAHVPFFSMGGSSFIEMFVGL 87
Query: 299 TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSR--GSTRDGTGVHDSIVNQLL 356
+RDLF A+ + +I DEIDAI KSR G G + +NQLL
Sbjct: 88 GASRVRDLFETAKKQAPS--------IIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLL 139
Query: 357 TKIDGVESLNN-VLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKM 415
++DG S N V+++ TNR ++LD AL+RPGR + QV + PD NGR++IL++H +
Sbjct: 140 AEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGV 199
Query: 416 KENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFA 453
K LA DVNLQE+A T +GA+L + A A
Sbjct: 200 K----LANDVNLQEVAKLTAGLAGADLANIINEAALLA 233
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 527 KVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKV 586
K+ KG LL GP G+GKT LA ++ PF + S I + +++ +
Sbjct: 42 KIPKG-----VLLVGPPGTGKTLLAKAVAGEAHVPFFS-MGGSSFIEMFVGLGASRVRDL 95
Query: 587 FEDAYK 592
FE A K
Sbjct: 96 FETAKK 101
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 131/251 (52%), Gaps = 31/251 (12%)
Query: 243 PHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKN 302
P + LGI KG+LLYGPPGTGKTL AR + + +++ G E++ K+VGE +
Sbjct: 232 PERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVI-GSELVQKYVGEGARM 290
Query: 303 IRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVN---QLLTKI 359
+R+LF A + +I FDEIDA+ +R DG G + + +L+T++
Sbjct: 291 VRELFEMARTKKAC--------IIFFDEIDAVGGARFD--DGAGGDNEVQRTMLELITQL 340
Query: 360 DGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENS 419
DG + N+ ++ TNR + LD ALLRPGR++ +VE SLPD GR I +IH+ M
Sbjct: 341 DGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS--- 397
Query: 420 FLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDF 479
+ + + ++ N +GAEL V A FA+ + + T DF
Sbjct: 398 -VERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKV-------------ATEKDF 443
Query: 480 LHALYEIVPAF 490
L A+ +++ +
Sbjct: 444 LKAVDKVISGY 454
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 496 DLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAG 555
D+ S + G D ++ + + + +L E+ P LL GP G+GKT A
Sbjct: 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVA 264
Query: 556 IDSDFPFVKIISAE 569
+D F+++I +E
Sbjct: 265 NRTDATFIRVIGSE 278
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 121/231 (52%), Gaps = 19/231 (8%)
Query: 243 PHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI-VNGPEVLSKFVGETEK 301
P ++G + KG+LL GPPG GKT +AR + P I +G + + FVG
Sbjct: 62 PSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG--EARVPFITASGSDFVEMFVGVGAA 119
Query: 302 NIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGS-TRDGTGVHDSIVNQLLTKID 360
+RDLF A+ ++ DEIDA+ + RGS G + +NQLL ++D
Sbjct: 120 RVRDLFETAKRHAPC--------IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 171
Query: 361 GVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSF 420
G E ++++ TNR D+LD ALLRPGR + Q+ I PD GR QIL+IH
Sbjct: 172 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR----GKP 227
Query: 421 LAPDVNLQELAARTKNYSGAELEGVAKSAVSFAL---NRQLSMDDLTKPVD 468
LA DV+L LA RT + GA+LE + A A R+++M DL + D
Sbjct: 228 LAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAAD 278
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 121/231 (52%), Gaps = 19/231 (8%)
Query: 243 PHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI-VNGPEVLSKFVGETEK 301
P ++G + KG+LL GPPG GKT +AR + P I +G + + FVG
Sbjct: 53 PSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG--EARVPFITASGSDFVEMFVGVGAA 110
Query: 302 NIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGS-TRDGTGVHDSIVNQLLTKID 360
+RDLF A+ ++ DEIDA+ + RGS G + +NQLL ++D
Sbjct: 111 RVRDLFETAKRHAPC--------IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 162
Query: 361 GVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSF 420
G E ++++ TNR D+LD ALLRPGR + Q+ I PD GR QIL+IH
Sbjct: 163 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR----GKP 218
Query: 421 LAPDVNLQELAARTKNYSGAELEGVAKSAVSFAL---NRQLSMDDLTKPVD 468
LA DV+L LA RT + GA+LE + A A R+++M DL + D
Sbjct: 219 LAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAAD 269
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 107/201 (53%), Gaps = 16/201 (7%)
Query: 243 PHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI-VNGPEVLSKFVGETEK 301
P ++G + KG+LL GPPG GKT +AR + P I +G + + FVG
Sbjct: 62 PSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG--EARVPFITASGSDFVEMFVGVGAA 119
Query: 302 NIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGS-TRDGTGVHDSIVNQLLTKID 360
+RDLF A+ ++ DEIDA+ + RGS G + +NQLL ++D
Sbjct: 120 RVRDLFETAKRHAPC--------IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 171
Query: 361 GVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSF 420
G E ++++ TNR D+LD ALLRPGR + Q+ I PD GR QIL+IH
Sbjct: 172 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR----GKP 227
Query: 421 LAPDVNLQELAARTKNYSGAE 441
LA DV+L LA RT + GA+
Sbjct: 228 LAEDVDLALLAKRTPGFVGAD 248
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 122 bits (305), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 107/201 (53%), Gaps = 16/201 (7%)
Query: 243 PHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI-VNGPEVLSKFVGETEK 301
P ++G + KG+LL GPPG GKT +AR + P I +G + + FVG
Sbjct: 38 PSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG--EARVPFITASGSDFVEMFVGVGAA 95
Query: 302 NIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGS-TRDGTGVHDSIVNQLLTKID 360
+RDLF A+ ++ DEIDA+ + RGS G + +NQLL ++D
Sbjct: 96 RVRDLFETAKRHAPC--------IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 147
Query: 361 GVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSF 420
G E ++++ TNR D+LD ALLRPGR + Q+ I PD GR QIL+IH
Sbjct: 148 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR----GKP 203
Query: 421 LAPDVNLQELAARTKNYSGAE 441
LA DV+L LA RT + GA+
Sbjct: 204 LAEDVDLALLAKRTPGFVGAD 224
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 119 bits (297), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 144/268 (53%), Gaps = 19/268 (7%)
Query: 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG 280
IGGL ++ +I + + + P + ++GIK KG++LYG PGTGKTL+A+ + +
Sbjct: 184 IGGLESQIQEI-KESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA 242
Query: 281 MEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSR-G 339
+IV G E++ K++G+ + R +F A + + ++ DEIDAI R
Sbjct: 243 TFLRIV-GSELIQKYLGDGPRLCRQIFKVAGENAPS--------IVFIDEIDAIGTKRYD 293
Query: 340 STRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLP 399
S G + +LL ++DG + +V +I TN+ + LD AL+RPGR++ ++ P
Sbjct: 294 SNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENP 353
Query: 400 DENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNR--- 456
D + + +IL IHT+KM L+ DVNL+ L + SGA+++ + A AL
Sbjct: 354 DLSTKKKILGIHTSKMN----LSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRM 409
Query: 457 QLSMDDLTKPVDEESIKVTMDDFLHALY 484
Q++ +D K E +K +++ L LY
Sbjct: 410 QVTAEDF-KQAKERVMKNKVEENLEGLY 436
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 122/231 (52%), Gaps = 16/231 (6%)
Query: 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG 280
+GGL + +I R A + + ++GI +G+LLYGPPGTGKT++ + +
Sbjct: 174 VGGLDMQKQEI-REAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA 232
Query: 281 MEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGS 340
+ VNG E + K++GE + +RD+F A + + +I DE+D+I R
Sbjct: 233 AFIR-VNGSEFVHKYLGEGPRMVRDVFRLARENAPS--------IIFIDEVDSIATKRFD 283
Query: 341 TRDGTGVH-DSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEI-SL 398
+ G+ I+ +LLT++DG + NV +I TNR D LD ALLRPGRL+ ++E SL
Sbjct: 284 AQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSL 343
Query: 399 PDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSA 449
D R I +KM LAP+ +L L R + SGA + + + A
Sbjct: 344 RDRRERRLIFGTIASKMS----LAPEADLDSLIIRNDSLSGAVIAAIMQEA 390
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 114/226 (50%), Gaps = 21/226 (9%)
Query: 234 RAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI-VNGPEVL 292
R F + P +LG K KG LL GPPG GKTL+A+ + P + + G E +
Sbjct: 19 REFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT--EAQVPFLAMAGAEFV 76
Query: 293 SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDG--TGVHDS 350
G +R LF +A R R ++ DEIDA+ K R +T G +
Sbjct: 77 EVIGGLGAARVRSLFKEA----RARAPC----IVYIDEIDAVGKKRSTTMSGFSNTEEEQ 128
Query: 351 IVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQI 410
+NQLL ++DG+ + ++V+++ TNR D+LD AL+RPGRL+ V I LP R +I +
Sbjct: 129 TLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQ 188
Query: 411 HTNKMK---ENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFA 453
H +K ++F + Q LA T +SGA++ + A A
Sbjct: 189 HLKSLKLTQSSTFYS-----QRLAELTPGFSGADIANICNEAALHA 229
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 527 KVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAE 569
KV KG+ LL GP G GKT LA ++ PF+ + AE
Sbjct: 37 KVPKGA-----LLLGPPGCGKTLLAKAVATEAQVPFLAMAGAE 74
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 128/261 (49%), Gaps = 28/261 (10%)
Query: 255 KGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQ 314
KG+LL+GPPGTGKTL+ + I +G ++ + SK+VGE EK +R LFA A Q
Sbjct: 118 KGILLFGPPGTGKTLIGKCIASQ-SGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQ 176
Query: 315 RTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDS---IVNQLLTKIDG--VESLNNVL 369
VI DEID++ RG G H+S I + L ++DG S + +L
Sbjct: 177 PA--------VIFIDEIDSLLSQRGD-----GEHESSRRIKTEFLVQLDGATTSSEDRIL 223
Query: 370 LIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQE 429
++G TNR +DEA R RL ++ I LP+ + R QI+ N M + + +++
Sbjct: 224 VVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIV---INLMSKEQCCLSEEEIEQ 278
Query: 430 LAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPA 489
+ ++ +SGA++ + + A S R L D+ ++ + DF +A + P+
Sbjct: 279 IVQQSDAFSGADMTQLCREA-SLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPS 337
Query: 490 FGASTDDLE-RSRLNGMVDCG 509
S DLE N CG
Sbjct: 338 --VSPKDLELYENWNKTFGCG 356
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 99.0 bits (245), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 94/297 (31%), Positives = 150/297 (50%), Gaps = 40/297 (13%)
Query: 209 FRHKEFNLQSLGIG-----GLSAEFADIF-----RRAFASRVFPPHVTSKL--GIKH-VK 255
FR+ + NL +L + G + +F DI ++A V P + +L G++ +
Sbjct: 90 FRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPAR 149
Query: 256 GMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQR 315
G+LL+GPPG GKT++A+ + N I + + SK+VGE EK +R LFA A Q
Sbjct: 150 GLLLFGPPGNGKTMLAKAVAAESNATFFNI-SAASLTSKYVGEGEKLVRALFAVARELQP 208
Query: 316 TRGDQSDLHVIIFDEIDA-ICKSRGSTRDGTGVHDS---IVNQLLTKIDGVESL--NNVL 369
+ +I D++D+ +C+ R G HD+ + + L + DGV+S + VL
Sbjct: 209 S--------IIFIDQVDSLLCERR------EGEHDASRRLKTEFLIEFDGVQSAGDDRVL 254
Query: 370 LIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQE 429
++G TNR LDEA+LR R +V +SLP+E RL + K+ S L L +
Sbjct: 255 VMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLL--LLKNLLCKQGSPLT-QKELAQ 309
Query: 430 LAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486
LA T YSG++L +AK A + R+L + + E + + DF +L +I
Sbjct: 310 LARMTDGYSGSDLTALAKDA-ALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKI 365
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 111/197 (56%), Gaps = 16/197 (8%)
Query: 255 KGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQ 314
+G+LL+GPPGTGK+ +A+ + N ++ +++SK++GE+EK +++LF A ++
Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 227
Query: 315 RTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNN-VLLIGM 373
+ +I DEID++C SR + + + I + L ++ GV N+ +L++G
Sbjct: 228 PS--------IIFIDEIDSLCGSR--SENESEAARRIKTEFLVQMQGVGVDNDGILVLGA 277
Query: 374 TNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAAR 433
TN +LD A+ R R E ++ I LP+ + R + ++H +NS D QEL +
Sbjct: 278 TNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGST-QNSLTEAD--FQELGRK 332
Query: 434 TKNYSGAELEGVAKSAV 450
T YSGA++ + + A+
Sbjct: 333 TDGYSGADISIIVRDAL 349
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 95.9 bits (237), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 111/197 (56%), Gaps = 16/197 (8%)
Query: 255 KGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQ 314
+G+LL+GPPGTGK+ +A+ + N ++ +++SK++GE+EK +++LF A ++
Sbjct: 46 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 105
Query: 315 RTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNN-VLLIGM 373
+ +I DEID++C SR + + + I + L ++ GV N+ +L++G
Sbjct: 106 PS--------IIFIDEIDSLCGSR--SENESEAARRIKTEFLVQMQGVGVDNDGILVLGA 155
Query: 374 TNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAAR 433
TN +LD A+ R R E ++ I LP+ + R + ++H +NS D +EL +
Sbjct: 156 TNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLG-TTQNSLTEAD--FRELGRK 210
Query: 434 TKNYSGAELEGVAKSAV 450
T YSGA++ + + A+
Sbjct: 211 TDGYSGADISIIVRDAL 227
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 147/282 (52%), Gaps = 40/282 (14%)
Query: 222 GGLSAEFADIF-----RRAFASRVFPPHVTSKL--GIKH-VKGMLLYGPPGTGKTLMARQ 273
GG E+ DI ++A V P V +L G++ KG+LL+GPPG GKTL+AR
Sbjct: 14 GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARA 73
Query: 274 IGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDA 333
+ + I + + SK+VG+ EK +R LFA A + Q + +I DE+D+
Sbjct: 74 VATECSATFLNI-SAASLTSKYVGDGEKLVRALFAVARHMQPS--------IIFIDEVDS 124
Query: 334 ICKSRGSTRDGTGVHDS---IVNQLLTKIDGVES---LNNVLLIGMTNRKDMLDEALLRP 387
+ R S+ H++ + + L + DG+ + ++++ TNR LDEA LR
Sbjct: 125 LLSERSSS-----EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR- 178
Query: 388 GRLEVQVEISLPDENGRLQILQIHTNKM--KENSFLAPDVNLQELAARTKNYSGAELEGV 445
R +V +SLPDE R ++ N++ K+ S L + L+ LA T YSG++L +
Sbjct: 179 -RFTKRVYVSLPDEQTR----ELLLNRLLQKQGSPLDTEA-LRRLAKITDGYSGSDLTAL 232
Query: 446 AKSAVSFALNRQLSMDDLTKPVDEESIK-VTMDDFLHALYEI 486
AK A + R+L+++ + K +D +++ +T DF +L I
Sbjct: 233 AKDA-ALEPIRELNVEQV-KCLDISAMRAITEQDFHSSLKRI 272
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 110/209 (52%), Gaps = 18/209 (8%)
Query: 243 PHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKN 302
PH+ K K G+LLYGPPGTGK+ +A+ + N V+ +++SK++GE+EK
Sbjct: 50 PHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFS-VSSSDLVSKWMGESEKL 107
Query: 303 IRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV 362
++ LFA A ++ + +I DE+DA+ +RG + I +LL +++GV
Sbjct: 108 VKQLFAMARENKPS--------IIFIDEVDALTGTRGEGE--SEASRRIKTELLVQMNGV 157
Query: 363 -ESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFL 421
VL++G TN LD A+ R R E ++ I LPD R + +I+ + +
Sbjct: 158 GNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVG---DTPCV 212
Query: 422 APDVNLQELAARTKNYSGAELEGVAKSAV 450
+ + L A T+ YSG+++ V K A+
Sbjct: 213 LTKEDYRTLGAMTEGYSGSDIAVVVKDAL 241
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 133/264 (50%), Gaps = 19/264 (7%)
Query: 188 EASNDSGIKIVNQREGANSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTS 247
E D+G + + GA S+ ++ N++ + GL + + A V PH+
Sbjct: 20 EEGEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGA-KEALKEAVILPVKFPHLF- 77
Query: 248 KLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLF 307
K K G+LLYGPPGTGK+ +A+ + N V+ +++SK++GE+EK ++ LF
Sbjct: 78 KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFS-VSSSDLVSKWMGESEKLVKQLF 136
Query: 308 ADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV-ESLN 366
A A ++ + +I D++DA+ +RG + I +LL +++GV
Sbjct: 137 AMARENKPS--------IIFIDQVDALTGTRGEGE--SEASRRIKTELLVQMNGVGNDSQ 186
Query: 367 NVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVN 426
VL++G TN LD A+ R R E ++ I LPD R + +I+ S L + +
Sbjct: 187 GVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTP--SVLTKE-D 241
Query: 427 LQELAARTKNYSGAELEGVAKSAV 450
+ L A T+ YSG+++ V K A+
Sbjct: 242 YRTLGAMTEGYSGSDIAVVVKDAL 265
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 131/260 (50%), Gaps = 19/260 (7%)
Query: 192 DSGIKIVNQREGANSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGI 251
D+G + + GA S+ ++ N++ + GL + + A V PH+ K
Sbjct: 9 DNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGA-KEALKEAVILPVKFPHLF-KGNR 66
Query: 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAE 311
K G+LLYGPPGTGK+ +A+ + N V+ +++SK++GE+EK ++ LFA A
Sbjct: 67 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFS-VSSSDLVSKWMGESEKLVKQLFAMAR 125
Query: 312 NDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV-ESLNNVLL 370
++ + +I D++DA+ +RG + I +LL +++GV VL+
Sbjct: 126 ENKPS--------IIFIDQVDALTGTRGEGE--SEASRRIKTELLVQMNGVGNDSQGVLV 175
Query: 371 IGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQEL 430
+G TN LD A+ R R E ++ I LPD R + +I+ + + + + L
Sbjct: 176 LGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVG---DTPCVLTKEDYRTL 230
Query: 431 AARTKNYSGAELEGVAKSAV 450
A T+ YSG+++ V K A+
Sbjct: 231 GAMTEGYSGSDIAVVVKDAL 250
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 110/209 (52%), Gaps = 18/209 (8%)
Query: 243 PHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKN 302
PH+ K K G+LLYGPPGTGK+ +A+ + N V+ +++SK++GE+EK
Sbjct: 41 PHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFS-VSSSDLVSKWMGESEKL 98
Query: 303 IRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV 362
++ LFA A ++ + +I D++DA+ +RG + I +LL +++GV
Sbjct: 99 VKQLFAMARENKPS--------IIFIDQVDALTGTRGEGE--SEASRRIKTELLVQMNGV 148
Query: 363 -ESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFL 421
VL++G TN LD A+ R R E ++ I LPD R + +I+ + +
Sbjct: 149 GNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVG---DTPCV 203
Query: 422 APDVNLQELAARTKNYSGAELEGVAKSAV 450
+ + L A T+ YSG+++ V K A+
Sbjct: 204 LTKEDYRTLGAMTEGYSGSDIAVVVKDAL 232
>pdb|1QDN|A Chain A, Amino Terminal Domain Of The N-Ethylmaleimide Sensitive
Fusion Protein (Nsf)
pdb|1QDN|B Chain B, Amino Terminal Domain Of The N-Ethylmaleimide Sensitive
Fusion Protein (Nsf)
pdb|1QDN|C Chain C, Amino Terminal Domain Of The N-Ethylmaleimide Sensitive
Fusion Protein (Nsf)
Length = 204
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 96/201 (47%), Gaps = 21/201 (10%)
Query: 14 TMNVINTPSADLALTNLAYCSPADLLNFRVPNSNLFLASVAGDSFVLSLASHPSVNKGQI 73
+M P+ +L+L+N A S D + ++ + + ++ +L +HPSV G +
Sbjct: 6 SMQAARCPTDELSLSNCAVVSEKDYQS----GQHVIVRTSPNHKYIFTLRTHPSVVPGSV 61
Query: 74 ALNSVQRRHAKVSTGD--HVSLNRFIPPEDFNLALLTVELEFV-KKGSKNEQVDAVLLAN 130
A + QR+ A +S G V+L F + + +T+E++F+ KK + D +A
Sbjct: 62 AFSLPQRKWAGLSIGQEIEVALYSFDKAKQC-IGTMTIEIDFLQKKNIDSNPYDTDKMAA 120
Query: 131 QLRKRFINQVMTAGQRVVFEYHGNNYIFTVNGAAVEGQE-----------KSNALERGII 179
+ ++F NQ + GQ++VF + N+ +F + +E + K +E G++
Sbjct: 121 EFIQQFNNQAFSVGQQLVFSF--NDKLFGLLVKDIEAMDPSILKGEPASGKRQKIEVGLV 178
Query: 180 TNETYFVFEASNDSGIKIVNQ 200
+ FE + +S + ++ +
Sbjct: 179 VGNSQVAFEKAENSSLNLIGK 199
>pdb|1QCS|A Chain A, N-Terminal Domain Of N-Ethylmaleimide Sensitive Factor
(Nsf)
Length = 211
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 96/209 (45%), Gaps = 21/209 (10%)
Query: 6 GSQSSGVTTMNVINTPSADLALTNLAYCSPADLLNFRVPNSNLFLASVAGDSFVLSLASH 65
GS + + P+ +L+L+N A S D + ++ + + ++ +L +H
Sbjct: 1 GSHNXAGRSXQAARCPTDELSLSNCAVVSEKDYQS----GQHVIVRTSPNHKYIFTLRTH 56
Query: 66 PSVNKGQIALNSVQRRHAKVSTGD--HVSLNRFIPPEDFNLALLTVELEFV-KKGSKNEQ 122
PSV G +A + QR+ A +S G V+L F + + T+E++F+ KK +
Sbjct: 57 PSVVPGSVAFSLPQRKWAGLSIGQEIEVALYSFDKAKQC-IGTXTIEIDFLQKKNIDSNP 115
Query: 123 VDAVLLANQLRKRFINQVMTAGQRVVFEYHGNNYIFTVNGAAVEGQE-----------KS 171
D A + ++F NQ + GQ++VF + N+ +F + +E + K
Sbjct: 116 YDTDKXAAEFIQQFNNQAFSVGQQLVFSF--NDKLFGLLVKDIEAXDPSILKGEPASGKR 173
Query: 172 NALERGIITNETYFVFEASNDSGIKIVNQ 200
+E G++ + FE + +S + ++ +
Sbjct: 174 QKIEVGLVVGNSQVAFEKAENSSLNLIGK 202
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 17/89 (19%)
Query: 399 PDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQL 458
P+E RL IL+IH+ KM L +NL+++A SGAE++GV A +AL
Sbjct: 11 PNEEARLDILKIHSRKMN----LTRGINLRKIAELMPGASGAEVKGVCTEAGMYALR--- 63
Query: 459 SMDDLTKPVDEESIKVTMDDFLHALYEIV 487
E + VT +DF A+ +++
Sbjct: 64 ----------ERRVHVTQEDFEMAVAKVM 82
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 18/119 (15%)
Query: 257 MLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSK--FVGETEKNI--RDLFADAEN 312
+LL GP G+GKTLMA+ + K L+ P ++ L++ +VGE +NI R L A N
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDI--PIAISDATSLTEAGYVGEDVENILTRLLQASDWN 132
Query: 313 DQRTRGDQSDLHVIIFDEIDAICK---SRGSTRDGTGVHDSIVNQLLTKIDGVESLNNV 368
Q+ + ++ DEID I + +R TRD +G + + LL ++G SL N+
Sbjct: 133 VQKAQKG-----IVFIDEIDKISRLSENRSITRDVSG--EGVQQALLKIVEG--SLVNI 182
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 17/88 (19%)
Query: 399 PDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQL 458
P+E RL IL+IH+ K L +NL+++A SGAE++GV A +AL
Sbjct: 3 PNEEARLDILKIHSRKXN----LTRGINLRKIAELXPGASGAEVKGVCTEAGXYALR--- 55
Query: 459 SMDDLTKPVDEESIKVTMDDFLHALYEI 486
E + VT +DF A+ ++
Sbjct: 56 ----------ERRVHVTQEDFEXAVAKV 73
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 16/76 (21%)
Query: 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHV----------------KGMLLYGPPG 264
+ LS +F+D + A+R+ P ++ +G +H+ M+L+GPPG
Sbjct: 1 MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPG 60
Query: 265 TGKTLMARQIGKMLNG 280
TGKT +A I + N
Sbjct: 61 TGKTTLAEVIARYANA 76
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 255 KGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVG-ETEKNIRDLFADAEND 313
K +L+ GP G GKT +AR++ K+ N K+ +VG E + IRDL D+
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL-TDSAGG 109
Query: 314 QRTRGDQSDLHVIIFDEIDAICK 336
+Q+ ++ DEID ICK
Sbjct: 110 AIDAVEQNG--IVFIDEIDKICK 130
>pdb|1CR5|A Chain A, N-Terminal Domain Of Sec18p
pdb|1CR5|B Chain B, N-Terminal Domain Of Sec18p
pdb|1CR5|C Chain C, N-Terminal Domain Of Sec18p
Length = 189
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 16/174 (9%)
Query: 15 MNVINTPSADLALTNLAYCSPADLLNFRVPNSNLFLASVAGDSFVLSLASHPSVNKGQIA 74
+ V N P+ AL N+A SP D N N+++ + + FV + + G I
Sbjct: 8 LKVSNCPNNSYALANVAAVSPNDFPN------NIYI--IIDNLFVFTTRHSNDIPPGTIG 59
Query: 75 LNSVQRRHAKVSTGDHVSLNRF----IPPEDFNLALLTVELEFVKKGSKNEQV-DAVLLA 129
N QR S V F + L + +++ F +G V D LA
Sbjct: 60 FNGNQRTWGGWSLNQDVQAKAFDLFKYSGKQSYLGSIDIDISFRARGKAVSTVFDQDELA 119
Query: 130 NQLRKRFINQVMTAGQRVVFEYHGNNY---IFTVNGAAVEGQEKSNALERGIIT 180
Q + + +Q+ + Q ++ E+ G+ + I V + E ++A+ GI T
Sbjct: 120 KQFVRCYESQIFSPTQYLIMEFQGHFFDLKIRNVQAIDLGDIEPTSAVATGIET 173
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 42/99 (42%), Gaps = 14/99 (14%)
Query: 255 KGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSK-FVGETEKNIRD------LF 307
+ +LYGPPG GKT A + + L G + N +V SK + KN D F
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQEL-GYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYF 136
Query: 308 ADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTG 346
E Q G VII DE+D + G R G G
Sbjct: 137 KHNEEAQNLNGKH---FVIIMDEVDGMS---GGDRGGVG 169
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 14/111 (12%)
Query: 257 MLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSK--FVGETEKN-IRDLFADAEND 313
+LL GP G+GKTL+A + ++L+ P + L++ +VGE +N I+ L + D
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLD--VPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYD 111
Query: 314 QRTRGDQSDLHVIIFDEIDAICKSRGS---TRDGTGVHDSIVNQLLTKIDG 361
+ ++ ++ D+ID I + + TRD +G + + LL I+G
Sbjct: 112 VQ----KAQRGIVYIDQIDKISRKSDNPSITRDVSG--EGVQQALLKLIEG 156
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 538 LLEGPSGSGKTALAATAGIDSDFPF 562
LL GP+GSGKT LA T D PF
Sbjct: 55 LLIGPTGSGKTLLAETLARLLDVPF 79
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 14/111 (12%)
Query: 257 MLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSK--FVGETEKN-IRDLFADAEND 313
+LL GP G+GKTL+A + ++L+ P + L++ +VGE +N I+ L + D
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLD--VPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYD 111
Query: 314 QRTRGDQSDLHVIIFDEIDAICKSRGS---TRDGTGVHDSIVNQLLTKIDG 361
+ ++ ++ D+ID I + + TRD +G + + LL I+G
Sbjct: 112 VQ----KAQRGIVYIDQIDKISRKSDNPSITRDVSG--EGVQQALLKLIEG 156
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 538 LLEGPSGSGKTALAATAGIDSDFPF 562
LL GP+GSGKT LA T D PF
Sbjct: 55 LLIGPTGSGKTLLAETLARLLDVPF 79
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 34.3 bits (77), Expect = 0.29, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 397 SLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFAL-- 454
SLPD GR I +IH+ M + + + ++ N +GAEL V A FA+
Sbjct: 6 SLPDLEGRANIFRIHSKSMS----VERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRA 61
Query: 455 NRQLSMD-DLTKPVDE 469
R+++ + D K VD+
Sbjct: 62 RRKVATEKDFLKAVDK 77
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 255 KGMLLYGPPGTGKTLMARQIGKMLNGMEPKI-VNGPEVLSKFVGETE 300
+ +LL GPPGTGKT +A I + L P + G EV S + +TE
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTE 110
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Query: 470 ESIKVTMDDFLHALYEIVPAFGASTDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVS 529
E +K T A + V G L + +G+V ++ + ++VE +K S
Sbjct: 4 EEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVG----QENAREACGVIVELIK-S 58
Query: 530 KGSPLVTCLLEGPSGSGKTALAATAG--IDSDFPFVKIISAE 569
K LL GP G+GKTALA + S PF ++ +E
Sbjct: 59 KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSE 100
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 255 KGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVN-GPEVLSKFVGETE 300
+ +LL GPPGTGKT +A I + L P G EV S + +TE
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTE 124
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 470 ESIKVTMDDFLHALYEIVPAFGASTDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVS 529
E +K T A + V G L + +G+V ++ + ++VE +K S
Sbjct: 18 EEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVG----QENAREACGVIVELIK-S 72
Query: 530 KGSPLVTCLLEGPSGSGKTALAATAG--IDSDFPFVKIISAE 569
K LL GP G+GKTALA + S PF + +E
Sbjct: 73 KKXAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSE 114
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 255 KGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVG-ETEKNIRDL 306
K +L+ GP G GKT +AR++ K+ N K+ +VG E + IRDL
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 257 MLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291
+LL+GPPG GKT +A I L G+ ++ +GP +
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHEL-GVNLRVTSGPAI 74
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 26/157 (16%)
Query: 235 AFASRVFPPHVTSKLGIKHVKGMLLYGP-PGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293
AF F +TSK I H+ +L+ P PGTGKT +A+ + +N + VNG +
Sbjct: 32 AFDKETFKS-ITSKGKIPHI---ILHSPSPGTGKTTVAKALCHDVNA-DMMFVNGSDCKI 86
Query: 294 KFVGETEKNIRDLFADAEN-DQRTRGDQSDLHVIIFDEID--AICKSRGSTRDGTGVHDS 350
FV N FA A + D R + VI+ DE D + +S+ R + S
Sbjct: 87 DFVRGPLTN----FASAASFDGRQK-------VIVIDEFDRSGLAESQRHLRSFMEAYSS 135
Query: 351 IVNQLLT--KIDGV----ESLNNVLLIGMTNRKDMLD 381
+ ++T IDG+ +S V+ G +D ++
Sbjct: 136 NCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIE 172
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 255 KGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVG-ETEKNIRDL 306
K +L+ GP G GKT +AR++ K+ N K+ +VG E + IRDL
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 102
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 255 KGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVG-ETEKNIRDL 306
K +L+ GP G GKT +AR++ K+ N K+ +VG E + IRDL
Sbjct: 57 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 109
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 255 KGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVG-ETEKNIRDL 306
K +L+ GP G GKT +AR++ K+ N K+ +VG E + IRDL
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 257 MLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291
+LL+GPPG GKT +A I L G+ ++ +GP +
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHEL-GVNLRVTSGPAI 74
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 77/335 (22%), Positives = 129/335 (38%), Gaps = 87/335 (25%)
Query: 258 LLYGPPGTGKTLMARQIGKMLNGMEPKIVNG--PEVL----------------SKFVGET 299
LL G G GKT +A G+ +IV G PEV+ +K+ G+
Sbjct: 211 LLVGESGVGKTAIA-------EGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF 263
Query: 300 EKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKI 359
EK + L E D + ++ DEI I + G+ G +++ LL
Sbjct: 264 EKRFKALLKQLEQDTNS--------ILFIDEIHTIIGA-GAASGGQVDAANLIKPLL--- 311
Query: 360 DGVESLNNVLLIGMTNRKDM-----LDEALLRPGRLEVQVEISLPDENGRLQILQIHTNK 414
S + +IG T ++ D AL R R + +++I+ P +QI+ N
Sbjct: 312 ----SSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQII----NG 360
Query: 415 MKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQL---SMDDLTK------ 465
+K DV Y+ + + AV + +R L ++D + +
Sbjct: 361 LKPKYEAHHDV----------RYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARAR 410
Query: 466 --PVDEESIKVTMDDFLHALYEIVPAFGASTDDLERSRLNGMVDCGDRHKHIY---QRAM 520
PV + V + D + I S +R L + GDR K + +A+
Sbjct: 411 LMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNL---GDRLKMLVFGQDKAI 467
Query: 521 -LLVEQVKVSKG------SPLVTCLLEGPSGSGKT 548
L E +K+++ P+ + L GP+G GKT
Sbjct: 468 EALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKT 502
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 257 MLLYGPPGTGKTLMARQIGKMLNG 280
ML YGPPGTGKT + K L G
Sbjct: 61 MLFYGPPGTGKTSTILALTKELYG 84
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 255 KGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVG-ETEKNIRDL 306
K +L GP G GKT +AR++ K+ N K+ +VG E + IRDL
Sbjct: 51 KNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 257 MLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291
+LL+GPPG GKT +A I L G+ ++ +GP +
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHEL-GVNLRVTSGPAI 74
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 252 KHVKG--MLLYGPPGTGKTLMARQIGKMLN 279
K +KG + L GPPG GKT +A+ I K L
Sbjct: 104 KSLKGPILCLAGPPGVGKTSLAKSIAKSLG 133
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 533 PLVTCLLEGPSGSGK-TALAATAGIDSDFPFVKIISAESMIG-LHESTKC 580
P L+ GP+GSGK T LAA ++ + I++ E I +HES KC
Sbjct: 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKC 171
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 255 KGMLLYGPPGTGKTLMARQIGKMLNGMEP-KIVNGPEVLSKFVGETEKNIRDLFADAEND 313
+ +L+ G PGTGKT +A + L P + G E+ S +TE + F +
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEA-LTQAFRRSIGV 144
Query: 314 QRTRGDQSDLHVIIFDEIDAI 334
+ G +H + EID I
Sbjct: 145 RIKEGPPGVVHTVSLHEIDVI 165
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 257 MLLYGPPGTGKTLMARQIGKMLNGME 282
+L+ G PGTGKT MA I L+G +
Sbjct: 13 ILITGTPGTGKTSMAEMIAAELDGFQ 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,152,439
Number of Sequences: 62578
Number of extensions: 753134
Number of successful extensions: 2567
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2314
Number of HSP's gapped (non-prelim): 139
length of query: 744
length of database: 14,973,337
effective HSP length: 106
effective length of query: 638
effective length of database: 8,340,069
effective search space: 5320964022
effective search space used: 5320964022
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)