Query 004584
Match_columns 744
No_of_seqs 580 out of 4680
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 01:47:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004584.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004584hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0741 AAA+-type ATPase [Post 100.0 8E-127 2E-131 993.9 55.2 699 9-715 5-724 (744)
2 KOG0733 Nuclear AAA ATPase (VC 100.0 7.9E-87 1.7E-91 705.7 42.2 510 212-742 185-770 (802)
3 KOG0730 AAA+-type ATPase [Post 100.0 2.1E-80 4.5E-85 668.4 41.0 627 30-741 29-674 (693)
4 TIGR01243 CDC48 AAA family ATP 100.0 8E-73 1.7E-77 665.6 61.9 675 14-741 3-710 (733)
5 COG1222 RPT1 ATP-dependent 26S 100.0 4E-59 8.6E-64 470.9 28.3 286 174-488 105-394 (406)
6 KOG0736 Peroxisome assembly fa 100.0 6.6E-57 1.4E-61 489.5 40.0 576 128-742 306-933 (953)
7 COG0464 SpoVK ATPases of the A 100.0 1.6E-50 3.6E-55 458.1 42.8 471 238-741 2-483 (494)
8 KOG0735 AAA+-type ATPase [Post 100.0 4.4E-50 9.6E-55 432.1 33.8 429 253-703 430-874 (952)
9 KOG0730 AAA+-type ATPase [Post 100.0 5E-51 1.1E-55 440.9 23.9 254 209-491 426-679 (693)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 4E-50 8.6E-55 426.6 24.9 266 210-491 504-774 (802)
11 KOG0736 Peroxisome assembly fa 100.0 3.1E-48 6.8E-53 422.0 24.1 264 211-491 666-937 (953)
12 KOG0727 26S proteasome regulat 100.0 4.2E-47 9.2E-52 364.0 22.7 297 151-486 96-396 (408)
13 KOG0728 26S proteasome regulat 100.0 2.5E-46 5.4E-51 358.3 20.8 284 175-487 102-389 (404)
14 KOG0726 26S proteasome regulat 100.0 4.7E-46 1E-50 363.6 18.9 283 175-486 140-426 (440)
15 KOG0652 26S proteasome regulat 100.0 1.2E-45 2.5E-50 355.6 20.9 248 211-487 165-413 (424)
16 COG1223 Predicted ATPase (AAA+ 100.0 1.5E-43 3.3E-48 341.3 24.1 310 124-490 49-359 (368)
17 KOG0729 26S proteasome regulat 100.0 7.7E-44 1.7E-48 344.0 17.2 249 211-488 171-420 (435)
18 KOG0734 AAA+-type ATPase conta 100.0 5.6E-43 1.2E-47 366.6 20.3 243 212-486 299-541 (752)
19 KOG0738 AAA+-type ATPase [Post 100.0 1.1E-42 2.5E-47 353.0 20.8 262 210-491 205-474 (491)
20 KOG0735 AAA+-type ATPase [Post 100.0 1E-41 2.2E-46 367.6 22.3 233 212-462 662-894 (952)
21 PTZ00454 26S protease regulato 100.0 2.6E-40 5.6E-45 358.2 28.8 286 174-488 99-388 (398)
22 KOG0732 AAA+-type ATPase conta 100.0 5.9E-40 1.3E-44 374.9 21.4 383 212-610 260-669 (1080)
23 PTZ00361 26 proteosome regulat 100.0 1.9E-38 4.2E-43 345.1 27.1 284 175-487 138-425 (438)
24 PRK03992 proteasome-activating 100.0 3.5E-38 7.6E-43 344.0 28.6 286 177-491 88-377 (389)
25 KOG0731 AAA+-type ATPase conta 100.0 6.7E-39 1.4E-43 358.0 22.2 247 212-487 306-554 (774)
26 KOG0739 AAA+-type ATPase [Post 100.0 4.2E-39 9.1E-44 315.9 14.7 263 209-491 125-421 (439)
27 TIGR01243 CDC48 AAA family ATP 100.0 1.2E-37 2.6E-42 367.3 26.9 264 211-491 447-715 (733)
28 COG0464 SpoVK ATPases of the A 100.0 1.5E-37 3.2E-42 352.3 24.5 253 210-490 235-487 (494)
29 KOG0651 26S proteasome regulat 100.0 9.3E-39 2E-43 316.1 12.2 247 212-487 127-374 (388)
30 KOG0737 AAA+-type ATPase [Post 100.0 1.3E-37 2.8E-42 317.2 18.9 257 213-489 88-362 (386)
31 COG0465 HflB ATP-dependent Zn 100.0 4.3E-37 9.4E-42 338.7 20.7 245 212-486 145-390 (596)
32 CHL00195 ycf46 Ycf46; Provisio 100.0 7.2E-36 1.6E-40 329.9 24.5 248 212-493 223-470 (489)
33 TIGR01242 26Sp45 26S proteasom 100.0 1.4E-34 3E-39 314.8 29.2 249 209-486 114-363 (364)
34 TIGR03689 pup_AAA proteasome A 100.0 4E-35 8.7E-40 322.9 24.6 257 212-485 177-477 (512)
35 COG1222 RPT1 ATP-dependent 26S 100.0 3E-35 6.4E-40 297.9 17.3 236 499-742 150-393 (406)
36 TIGR01241 FtsH_fam ATP-depende 100.0 2.6E-34 5.7E-39 324.5 23.6 247 212-488 50-297 (495)
37 TIGR02639 ClpA ATP-dependent C 100.0 2.2E-32 4.9E-37 321.4 35.0 437 215-710 180-707 (731)
38 CHL00176 ftsH cell division pr 100.0 4.1E-33 8.9E-38 317.4 23.3 245 212-486 178-423 (638)
39 PRK11034 clpA ATP-dependent Cl 100.0 2.6E-31 5.6E-36 307.6 33.4 435 216-709 185-710 (758)
40 CHL00195 ycf46 Ycf46; Provisio 100.0 6.6E-30 1.4E-34 282.6 35.9 369 323-742 82-464 (489)
41 CHL00206 ycf2 Ycf2; Provisiona 100.0 7.8E-32 1.7E-36 319.8 21.4 212 243-488 1619-1879(2281)
42 PRK10733 hflB ATP-dependent me 100.0 4E-31 8.6E-36 305.1 23.9 247 213-489 148-395 (644)
43 PLN00020 ribulose bisphosphate 100.0 2.9E-31 6.2E-36 273.9 19.6 196 247-455 141-353 (413)
44 KOG0740 AAA+-type ATPase [Post 100.0 2.2E-31 4.8E-36 282.2 17.2 261 212-492 148-410 (428)
45 CHL00095 clpC Clp protease ATP 100.0 5.4E-28 1.2E-32 287.4 35.0 449 215-709 177-776 (821)
46 TIGR03345 VI_ClpV1 type VI sec 100.0 9.1E-28 2E-32 283.7 33.8 190 215-439 185-391 (852)
47 TIGR03346 chaperone_ClpB ATP-d 100.0 6.1E-27 1.3E-31 279.1 35.8 450 215-713 171-824 (852)
48 PRK10865 protein disaggregatio 100.0 5.1E-26 1.1E-30 269.8 37.3 189 215-438 176-381 (857)
49 KOG0734 AAA+-type ATPase conta 100.0 8.2E-28 1.8E-32 253.0 15.3 229 504-742 308-542 (752)
50 KOG0727 26S proteasome regulat 100.0 1.6E-27 3.6E-32 229.3 15.8 240 495-742 150-397 (408)
51 COG1223 Predicted ATPase (AAA+ 99.9 5.4E-27 1.2E-31 227.0 17.4 218 513-740 127-354 (368)
52 COG0542 clpA ATP-binding subun 99.9 8.9E-26 1.9E-30 255.2 30.0 441 214-710 167-750 (786)
53 KOG0738 AAA+-type ATPase [Post 99.9 5.1E-27 1.1E-31 239.3 14.9 259 477-741 192-469 (491)
54 KOG0728 26S proteasome regulat 99.9 1.4E-26 3E-31 222.7 13.3 232 503-742 150-389 (404)
55 KOG0729 26S proteasome regulat 99.9 1.5E-26 3.2E-31 224.4 12.7 224 511-742 188-419 (435)
56 KOG0652 26S proteasome regulat 99.9 1.8E-26 3.9E-31 223.1 11.6 219 516-742 187-413 (424)
57 PTZ00454 26S protease regulato 99.9 4.8E-25 1E-29 239.3 20.6 239 495-742 140-387 (398)
58 KOG0731 AAA+-type ATPase conta 99.9 1.5E-24 3.2E-29 243.3 19.0 211 523-742 333-554 (774)
59 PRK03992 proteasome-activating 99.9 4.5E-24 9.7E-29 233.2 20.4 238 497-742 128-373 (389)
60 KOG0726 26S proteasome regulat 99.9 2.1E-25 4.6E-30 219.0 8.3 218 514-742 199-427 (440)
61 PTZ00361 26 proteosome regulat 99.9 3.4E-24 7.4E-29 233.8 17.6 231 503-742 186-425 (438)
62 KOG0739 AAA+-type ATPase [Post 99.9 1.4E-24 3E-29 214.0 11.8 205 489-696 122-332 (439)
63 KOG0737 AAA+-type ATPase [Post 99.9 1.3E-23 2.9E-28 215.0 16.0 243 496-740 88-358 (386)
64 TIGR03689 pup_AAA proteasome A 99.9 3.5E-23 7.6E-28 228.6 20.3 240 496-740 178-477 (512)
65 TIGR01241 FtsH_fam ATP-depende 99.9 4.1E-23 9E-28 233.5 19.7 209 525-742 79-296 (495)
66 PLN00020 ribulose bisphosphate 99.9 8.9E-23 1.9E-27 211.2 17.5 168 529-699 143-332 (413)
67 COG0465 HflB ATP-dependent Zn 99.9 8.5E-23 1.8E-27 225.8 17.9 208 526-742 175-391 (596)
68 CHL00206 ycf2 Ycf2; Provisiona 99.9 1.3E-22 2.8E-27 242.1 19.5 202 528-742 1624-1878(2281)
69 CHL00176 ftsH cell division pr 99.9 1.9E-22 4.1E-27 230.2 19.8 208 525-741 207-423 (638)
70 TIGR01242 26Sp45 26S proteasom 99.9 5.7E-22 1.2E-26 215.9 19.6 232 501-741 123-363 (364)
71 CHL00181 cbbX CbbX; Provisiona 99.9 1.9E-21 4.1E-26 203.1 19.8 235 221-480 25-280 (287)
72 KOG0651 26S proteasome regulat 99.9 1.5E-22 3.2E-27 201.4 9.0 208 523-741 155-373 (388)
73 TIGR02880 cbbX_cfxQ probable R 99.9 6.6E-21 1.4E-25 199.3 19.3 236 221-481 24-280 (284)
74 KOG0744 AAA+-type ATPase [Post 99.9 1.9E-21 4.1E-26 194.3 12.8 215 251-485 174-413 (423)
75 KOG0732 AAA+-type ATPase conta 99.9 9.6E-21 2.1E-25 218.0 17.4 244 496-741 261-525 (1080)
76 KOG0741 AAA+-type ATPase [Post 99.8 1.9E-21 4.1E-26 205.1 10.4 237 504-742 222-491 (744)
77 TIGR02881 spore_V_K stage V sp 99.8 2.5E-20 5.4E-25 193.6 18.7 215 221-460 8-245 (261)
78 PRK10733 hflB ATP-dependent me 99.8 2.2E-20 4.7E-25 216.1 18.6 205 528-741 179-392 (644)
79 KOG0740 AAA+-type ATPase [Post 99.8 6E-21 1.3E-25 203.0 12.6 244 496-742 149-405 (428)
80 KOG0742 AAA+-type ATPase [Post 99.8 2.7E-19 5.9E-24 183.5 17.4 190 252-455 382-594 (630)
81 PF00004 AAA: ATPase family as 99.8 1.6E-19 3.4E-24 167.3 13.9 131 257-398 1-132 (132)
82 PF05496 RuvB_N: Holliday junc 99.8 6.3E-19 1.4E-23 171.8 17.3 183 512-715 29-230 (233)
83 COG2256 MGS1 ATPase related to 99.8 5E-19 1.1E-23 183.4 16.9 176 532-741 46-238 (436)
84 KOG0743 AAA+-type ATPase [Post 99.8 4.9E-19 1.1E-23 186.7 16.6 204 214-443 198-410 (457)
85 PF00004 AAA: ATPase family as 99.8 3E-18 6.4E-23 158.8 12.6 130 537-667 1-132 (132)
86 PF05496 RuvB_N: Holliday junc 99.8 1.2E-17 2.6E-22 162.9 15.3 189 214-449 21-225 (233)
87 TIGR02881 spore_V_K stage V sp 99.7 3.3E-17 7.2E-22 170.2 17.4 203 502-714 8-238 (261)
88 TIGR02880 cbbX_cfxQ probable R 99.7 1.9E-17 4E-22 173.4 15.3 226 502-737 24-281 (284)
89 CHL00181 cbbX CbbX; Provisiona 99.7 5.3E-17 1.2E-21 169.7 16.8 204 502-715 25-255 (287)
90 COG2255 RuvB Holliday junction 99.7 1.3E-16 2.8E-21 158.1 18.1 202 512-741 31-251 (332)
91 KOG0742 AAA+-type ATPase [Post 99.7 2.4E-16 5.2E-21 162.1 16.6 147 529-679 379-526 (630)
92 KOG2028 ATPase related to the 99.7 5.1E-16 1.1E-20 157.7 16.3 182 532-740 160-367 (554)
93 PTZ00112 origin recognition co 99.7 1.9E-15 4.2E-20 170.4 20.3 186 535-741 782-1006(1164)
94 TIGR00763 lon ATP-dependent pr 99.7 2.1E-15 4.6E-20 179.0 20.5 234 220-484 321-584 (775)
95 PRK00080 ruvB Holliday junctio 99.7 3.3E-15 7.1E-20 160.6 19.7 200 514-741 32-250 (328)
96 TIGR00635 ruvB Holliday juncti 99.7 3.7E-15 8E-20 159.0 19.8 211 215-485 2-228 (305)
97 PRK00080 ruvB Holliday junctio 99.7 3.7E-15 8E-20 160.2 19.5 216 214-486 22-250 (328)
98 COG2255 RuvB Holliday junction 99.7 4.1E-15 8.9E-20 147.5 17.9 196 214-456 23-234 (332)
99 TIGR00635 ruvB Holliday juncti 99.6 7.9E-15 1.7E-19 156.4 20.0 183 532-741 28-229 (305)
100 COG2256 MGS1 ATPase related to 99.6 1.9E-14 4.1E-19 149.7 18.2 177 213-436 20-204 (436)
101 PRK14956 DNA polymerase III su 99.6 3E-14 6.4E-19 155.6 20.3 172 534-738 40-243 (484)
102 COG1474 CDC6 Cdc6-related prot 99.6 2.4E-14 5.2E-19 153.9 17.8 193 531-741 39-265 (366)
103 TIGR02928 orc1/cdc6 family rep 99.6 2.8E-14 6E-19 156.3 17.8 196 532-741 38-274 (365)
104 KOG1051 Chaperone HSP104 and r 99.6 3.2E-13 7E-18 155.8 26.2 161 221-414 189-365 (898)
105 PRK14962 DNA polymerase III su 99.6 9.5E-14 2.1E-18 154.4 20.0 174 533-739 35-240 (472)
106 PF05621 TniB: Bacterial TniB 99.6 2.6E-14 5.6E-19 146.1 13.5 219 497-737 28-285 (302)
107 PRK14956 DNA polymerase III su 99.6 9.8E-14 2.1E-18 151.6 18.8 198 213-451 14-228 (484)
108 TIGR02928 orc1/cdc6 family rep 99.6 1.9E-13 4.2E-18 149.7 21.1 230 212-487 10-275 (365)
109 TIGR00763 lon ATP-dependent pr 99.6 6.1E-14 1.3E-18 166.6 18.2 188 514-710 327-550 (775)
110 TIGR02639 ClpA ATP-dependent C 99.6 4.8E-14 1E-18 166.6 16.7 198 533-741 202-429 (731)
111 PRK13342 recombination factor 99.6 1.4E-13 3E-18 152.5 19.2 171 533-740 35-218 (413)
112 KOG0743 AAA+-type ATPase [Post 99.6 4.9E-14 1.1E-18 149.2 14.7 160 512-681 210-383 (457)
113 PRK07003 DNA polymerase III su 99.5 1.9E-13 4.1E-18 154.4 20.1 158 534-713 38-227 (830)
114 PRK00411 cdc6 cell division co 99.5 2.3E-13 5E-18 150.7 19.9 195 532-741 53-282 (394)
115 PF02359 CDC48_N: Cell divisio 99.5 2.6E-14 5.6E-19 121.5 9.3 81 14-98 1-86 (87)
116 PRK14962 DNA polymerase III su 99.5 3.5E-13 7.7E-18 149.8 20.8 191 213-450 10-223 (472)
117 PRK14949 DNA polymerase III su 99.5 2.9E-13 6.3E-18 155.8 20.5 165 534-713 37-227 (944)
118 PRK14960 DNA polymerase III su 99.5 2.5E-13 5.3E-18 152.1 19.3 175 532-739 35-241 (702)
119 KOG0744 AAA+-type ATPase [Post 99.5 7.6E-14 1.6E-18 140.3 13.3 142 535-679 178-338 (423)
120 PRK07003 DNA polymerase III su 99.5 2.7E-13 5.9E-18 153.2 19.0 199 213-452 12-227 (830)
121 PRK14961 DNA polymerase III su 99.5 4.9E-13 1.1E-17 145.4 20.3 181 533-739 37-242 (363)
122 PRK07940 DNA polymerase III su 99.5 4.2E-13 9.2E-18 145.8 18.9 195 216-446 4-215 (394)
123 PRK07994 DNA polymerase III su 99.5 5.5E-13 1.2E-17 151.7 20.5 157 535-713 39-227 (647)
124 COG0466 Lon ATP-dependent Lon 99.5 5.5E-13 1.2E-17 147.6 19.7 162 221-412 325-508 (782)
125 PLN03025 replication factor C 99.5 3.1E-13 6.7E-18 144.7 17.1 157 533-711 33-205 (319)
126 COG3829 RocR Transcriptional r 99.5 8E-14 1.7E-18 150.6 12.3 168 532-714 266-479 (560)
127 PRK12323 DNA polymerase III su 99.5 2.2E-13 4.8E-18 152.1 16.2 198 213-451 12-231 (700)
128 PRK04195 replication factor C 99.5 6.6E-13 1.4E-17 149.9 20.3 176 515-711 22-207 (482)
129 PRK13341 recombination factor 99.5 2.8E-13 6.2E-18 157.2 17.6 179 532-740 50-246 (725)
130 PRK12323 DNA polymerase III su 99.5 4.2E-13 9E-18 150.0 18.1 158 534-713 38-232 (700)
131 PRK00411 cdc6 cell division co 99.5 1.1E-12 2.3E-17 145.4 21.4 231 212-487 25-283 (394)
132 PRK06893 DNA replication initi 99.5 1.4E-13 3.1E-18 139.9 13.0 178 535-739 40-228 (229)
133 TIGR00362 DnaA chromosomal rep 99.5 3.9E-13 8.5E-18 148.9 17.5 223 212-485 105-336 (405)
134 PRK00149 dnaA chromosomal repl 99.5 3.2E-13 6.8E-18 151.4 16.8 224 212-486 117-349 (450)
135 TIGR00390 hslU ATP-dependent p 99.5 2E-13 4.2E-18 145.6 13.7 147 594-742 247-431 (441)
136 PRK14958 DNA polymerase III su 99.5 6.5E-13 1.4E-17 149.3 18.8 173 534-739 38-242 (509)
137 PTZ00112 origin recognition co 99.5 6.1E-13 1.3E-17 150.6 18.1 219 220-486 756-1006(1164)
138 KOG2004 Mitochondrial ATP-depe 99.5 1.7E-13 3.7E-18 150.5 13.1 163 220-412 412-596 (906)
139 PRK06645 DNA polymerase III su 99.5 8E-13 1.7E-17 147.4 18.8 185 532-739 41-254 (507)
140 PRK06645 DNA polymerase III su 99.5 1.3E-12 2.8E-17 145.8 19.7 200 213-453 17-237 (507)
141 PRK14949 DNA polymerase III su 99.5 9.8E-13 2.1E-17 151.6 18.9 197 213-450 12-225 (944)
142 PRK14960 DNA polymerase III su 99.5 1.1E-12 2.4E-17 147.0 18.7 199 213-452 11-226 (702)
143 PRK14961 DNA polymerase III su 99.5 1.8E-12 3.8E-17 141.1 19.9 198 213-451 12-226 (363)
144 KOG0989 Replication factor C, 99.5 8.3E-13 1.8E-17 132.6 15.7 166 532-713 55-237 (346)
145 PRK11034 clpA ATP-dependent Cl 99.5 7E-13 1.5E-17 154.6 17.5 198 533-741 206-433 (758)
146 PRK07994 DNA polymerase III su 99.5 1E-12 2.2E-17 149.6 18.3 198 213-451 12-226 (647)
147 PRK05201 hslU ATP-dependent pr 99.5 4.1E-13 8.9E-18 143.2 14.0 147 594-742 249-433 (443)
148 TIGR00390 hslU ATP-dependent p 99.5 1.5E-12 3.3E-17 138.9 18.1 182 221-408 14-342 (441)
149 COG2204 AtoC Response regulato 99.5 3.2E-13 7E-18 146.6 13.0 168 534-716 164-376 (464)
150 KOG0989 Replication factor C, 99.5 1E-12 2.3E-17 131.9 15.6 197 213-450 32-235 (346)
151 PRK14951 DNA polymerase III su 99.5 1.7E-12 3.7E-17 147.5 19.1 173 534-739 38-247 (618)
152 PRK06893 DNA replication initi 99.5 2.8E-12 6.1E-17 130.4 18.5 162 256-450 41-208 (229)
153 TIGR02902 spore_lonB ATP-depen 99.5 1.2E-12 2.6E-17 148.6 17.5 222 213-484 61-330 (531)
154 PRK14958 DNA polymerase III su 99.5 1.4E-12 3E-17 146.6 17.6 199 213-452 12-227 (509)
155 PRK14964 DNA polymerase III su 99.5 2.2E-12 4.8E-17 142.7 18.9 194 213-453 9-225 (491)
156 PRK08691 DNA polymerase III su 99.5 1.5E-12 3.2E-17 147.4 17.7 182 532-739 36-242 (709)
157 PRK14952 DNA polymerase III su 99.4 3.4E-12 7.4E-17 144.6 20.2 173 534-738 34-241 (584)
158 PRK05201 hslU ATP-dependent pr 99.4 1.7E-12 3.6E-17 138.6 16.5 183 221-409 17-345 (443)
159 PRK14964 DNA polymerase III su 99.4 2.8E-12 6.1E-17 141.9 18.9 175 532-739 33-239 (491)
160 PRK08084 DNA replication initi 99.4 1.2E-12 2.6E-17 133.6 14.7 178 535-739 46-234 (235)
161 TIGR03420 DnaA_homol_Hda DnaA 99.4 2.4E-12 5.2E-17 131.1 16.9 195 212-455 10-211 (226)
162 PRK00149 dnaA chromosomal repl 99.4 1.1E-12 2.4E-17 147.1 15.7 191 532-741 146-349 (450)
163 PRK14959 DNA polymerase III su 99.4 4E-12 8.7E-17 143.4 19.9 172 534-738 38-241 (624)
164 PRK08691 DNA polymerase III su 99.4 2E-12 4.2E-17 146.4 17.1 199 213-452 12-227 (709)
165 PRK14957 DNA polymerase III su 99.4 5.3E-12 1.1E-16 141.7 20.5 173 533-738 37-241 (546)
166 KOG2028 ATPase related to the 99.4 2.2E-12 4.9E-17 131.5 15.5 194 256-487 164-369 (554)
167 TIGR02640 gas_vesic_GvpN gas v 99.4 7.8E-12 1.7E-16 129.8 20.0 186 535-743 22-259 (262)
168 PRK06620 hypothetical protein; 99.4 2.3E-12 5.1E-17 129.1 15.2 163 535-738 45-213 (214)
169 PRK05563 DNA polymerase III su 99.4 6.6E-12 1.4E-16 143.1 20.7 173 533-738 37-241 (559)
170 PRK14963 DNA polymerase III su 99.4 7.4E-12 1.6E-16 140.5 20.5 188 513-739 20-238 (504)
171 TIGR00362 DnaA chromosomal rep 99.4 2.1E-12 4.6E-17 143.0 15.9 171 532-714 134-318 (405)
172 TIGR02902 spore_lonB ATP-depen 99.4 1.7E-12 3.7E-17 147.3 15.3 184 533-739 85-330 (531)
173 COG0466 Lon ATP-dependent Lon 99.4 6.6E-12 1.4E-16 139.2 19.1 182 512-706 328-549 (782)
174 TIGR03420 DnaA_homol_Hda DnaA 99.4 2.7E-12 5.9E-17 130.7 15.0 179 532-738 36-225 (226)
175 PRK12422 chromosomal replicati 99.4 3.7E-12 8.1E-17 141.0 17.1 230 212-486 106-343 (445)
176 PRK04195 replication factor C 99.4 5.5E-12 1.2E-16 142.5 18.7 195 213-451 10-205 (482)
177 PRK08903 DnaA regulatory inact 99.4 4.7E-12 1E-16 129.0 16.4 174 532-739 40-224 (227)
178 PRK10787 DNA-binding ATP-depen 99.4 6.1E-12 1.3E-16 148.0 19.6 228 220-484 323-580 (784)
179 PRK07764 DNA polymerase III su 99.4 6.9E-12 1.5E-16 147.4 19.9 172 535-738 38-243 (824)
180 PRK14951 DNA polymerase III su 99.4 7.5E-12 1.6E-16 142.3 19.4 199 213-452 12-232 (618)
181 PRK14969 DNA polymerase III su 99.4 6.2E-12 1.4E-16 142.3 18.8 173 534-739 38-242 (527)
182 PRK12402 replication factor C 99.4 1.1E-11 2.3E-16 134.3 19.9 179 534-739 36-247 (337)
183 PRK05342 clpX ATP-dependent pr 99.4 8.2E-12 1.8E-16 136.4 18.9 246 221-480 73-399 (412)
184 PRK12402 replication factor C 99.4 1.4E-11 3.1E-16 133.3 20.8 193 213-446 11-227 (337)
185 PRK13342 recombination factor 99.4 7E-12 1.5E-16 138.9 18.4 206 214-485 9-218 (413)
186 PRK14088 dnaA chromosomal repl 99.4 4.3E-12 9.3E-17 140.9 16.7 223 212-486 100-332 (440)
187 PRK08084 DNA replication initi 99.4 1.1E-11 2.5E-16 126.4 18.4 193 212-453 17-217 (235)
188 PRK05563 DNA polymerase III su 99.4 9.8E-12 2.1E-16 141.7 19.7 199 213-452 12-227 (559)
189 PRK05896 DNA polymerase III su 99.4 7.7E-12 1.7E-16 140.4 18.2 198 213-451 12-226 (605)
190 PF00308 Bac_DnaA: Bacterial d 99.4 6.6E-12 1.4E-16 126.5 16.0 204 212-452 3-215 (219)
191 PRK14086 dnaA chromosomal repl 99.4 6.5E-12 1.4E-16 141.0 17.5 225 212-486 283-515 (617)
192 TIGR03345 VI_ClpV1 type VI sec 99.4 4E-12 8.6E-17 151.3 16.5 173 532-713 206-409 (852)
193 TIGR02397 dnaX_nterm DNA polym 99.4 1.3E-11 2.8E-16 134.7 19.3 198 213-451 10-224 (355)
194 COG1474 CDC6 Cdc6-related prot 99.4 3.6E-11 7.8E-16 129.5 22.3 221 221-486 19-265 (366)
195 PRK14965 DNA polymerase III su 99.4 7E-12 1.5E-16 143.6 17.7 200 213-453 12-228 (576)
196 PRK14957 DNA polymerase III su 99.4 1.4E-11 2.9E-16 138.5 19.5 199 213-452 12-227 (546)
197 PRK14963 DNA polymerase III su 99.4 1.5E-11 3.3E-16 137.9 20.0 191 213-450 10-222 (504)
198 PRK07133 DNA polymerase III su 99.4 9.8E-12 2.1E-16 142.2 18.5 199 213-452 14-226 (725)
199 PRK07133 DNA polymerase III su 99.4 1.6E-11 3.5E-16 140.5 20.1 179 533-737 39-239 (725)
200 PRK12422 chromosomal replicati 99.4 6.8E-12 1.5E-16 138.9 16.4 191 532-741 139-343 (445)
201 TIGR02397 dnaX_nterm DNA polym 99.4 1.8E-11 4E-16 133.5 19.3 175 532-739 34-240 (355)
202 PRK05896 DNA polymerase III su 99.4 1.3E-11 2.9E-16 138.5 18.3 172 533-737 37-240 (605)
203 CHL00095 clpC Clp protease ATP 99.4 3.5E-12 7.6E-17 152.5 14.4 173 532-713 198-400 (821)
204 TIGR02903 spore_lon_C ATP-depe 99.4 2.9E-11 6.2E-16 139.5 21.4 194 533-739 174-428 (615)
205 PRK14969 DNA polymerase III su 99.4 8.4E-12 1.8E-16 141.3 16.7 199 213-452 12-227 (527)
206 PRK10787 DNA-binding ATP-depen 99.4 1.2E-11 2.7E-16 145.5 18.3 218 512-739 327-580 (784)
207 PRK14952 DNA polymerase III su 99.4 2E-11 4.3E-16 138.4 19.3 199 213-452 9-226 (584)
208 PRK08451 DNA polymerase III su 99.4 3.1E-11 6.7E-16 134.9 20.3 160 533-714 35-226 (535)
209 PRK14088 dnaA chromosomal repl 99.4 7.1E-12 1.5E-16 139.2 14.9 190 534-741 130-332 (440)
210 PRK08903 DnaA regulatory inact 99.4 2.4E-11 5.3E-16 123.8 17.6 205 212-484 13-224 (227)
211 PRK14965 DNA polymerase III su 99.4 1.8E-11 3.9E-16 140.3 18.5 173 532-737 36-240 (576)
212 PRK13341 recombination factor 99.4 2E-11 4.3E-16 142.0 19.0 192 213-451 24-223 (725)
213 COG3604 FhlA Transcriptional r 99.4 6.1E-12 1.3E-16 134.3 13.4 193 502-714 222-456 (550)
214 PRK05342 clpX ATP-dependent pr 99.4 1.7E-11 3.6E-16 134.1 17.2 181 533-713 107-377 (412)
215 PRK05642 DNA replication initi 99.4 3.2E-11 6.9E-16 123.0 18.1 197 212-454 14-217 (234)
216 PF05673 DUF815: Protein of un 99.4 5E-11 1.1E-15 118.4 18.7 165 212-416 22-211 (249)
217 KOG1514 Origin recognition com 99.4 3E-11 6.5E-16 133.5 18.8 200 532-742 420-656 (767)
218 PRK14959 DNA polymerase III su 99.3 1.8E-11 4E-16 138.1 17.6 190 213-449 12-224 (624)
219 KOG2004 Mitochondrial ATP-depe 99.3 1.6E-11 3.6E-16 135.2 16.5 183 512-707 416-638 (906)
220 PRK08727 hypothetical protein; 99.3 4.5E-11 9.8E-16 121.9 18.8 189 212-451 14-210 (233)
221 PLN03025 replication factor C 99.3 3.2E-11 6.9E-16 129.2 18.6 190 213-447 9-202 (319)
222 PRK14953 DNA polymerase III su 99.3 3.9E-11 8.4E-16 134.3 19.8 180 534-739 38-242 (486)
223 PRK14953 DNA polymerase III su 99.3 2.7E-11 5.8E-16 135.5 18.0 199 213-452 12-227 (486)
224 COG5271 MDN1 AAA ATPase contai 99.3 9.5E-11 2.1E-15 136.8 22.2 150 533-694 887-1060(4600)
225 PRK09111 DNA polymerase III su 99.3 5.5E-11 1.2E-15 135.6 20.2 182 532-739 44-255 (598)
226 TIGR00382 clpX endopeptidase C 99.3 2.8E-11 6.1E-16 131.4 17.0 229 221-457 79-388 (413)
227 PRK07940 DNA polymerase III su 99.3 4.3E-11 9.3E-16 130.2 18.3 174 512-706 10-213 (394)
228 PRK06647 DNA polymerase III su 99.3 5.6E-11 1.2E-15 135.0 19.9 173 533-738 37-241 (563)
229 PRK14955 DNA polymerase III su 99.3 4E-11 8.7E-16 132.0 18.2 178 533-738 37-254 (397)
230 PHA02544 44 clamp loader, smal 99.3 5.9E-11 1.3E-15 127.3 18.9 159 213-414 17-175 (316)
231 PRK06305 DNA polymerase III su 99.3 8.1E-11 1.8E-15 130.9 20.4 173 533-738 38-243 (451)
232 PRK08727 hypothetical protein; 99.3 2.1E-11 4.6E-16 124.2 14.6 177 535-739 42-229 (233)
233 PRK06647 DNA polymerase III su 99.3 6E-11 1.3E-15 134.7 19.0 199 213-452 12-227 (563)
234 PRK00440 rfc replication facto 99.3 1.1E-10 2.3E-15 125.5 20.2 171 535-739 39-224 (319)
235 PRK14970 DNA polymerase III su 99.3 1.1E-10 2.5E-15 127.7 20.7 181 532-738 37-230 (367)
236 COG2812 DnaX DNA polymerase II 99.3 2.4E-11 5.3E-16 134.0 15.0 200 213-453 12-228 (515)
237 PRK07764 DNA polymerase III su 99.3 5.5E-11 1.2E-15 139.9 18.7 197 213-450 11-226 (824)
238 PRK14086 dnaA chromosomal repl 99.3 3.9E-11 8.4E-16 134.9 16.3 167 535-713 315-495 (617)
239 TIGR02640 gas_vesic_GvpN gas v 99.3 3.4E-11 7.3E-16 125.1 14.8 133 254-412 21-198 (262)
240 PHA02544 44 clamp loader, smal 99.3 1.3E-10 2.9E-15 124.6 20.0 161 533-711 42-214 (316)
241 PRK05642 DNA replication initi 99.3 4E-11 8.6E-16 122.3 15.0 178 534-739 45-233 (234)
242 PRK09111 DNA polymerase III su 99.3 8.5E-11 1.8E-15 134.1 19.2 199 213-452 20-240 (598)
243 PRK14087 dnaA chromosomal repl 99.3 5E-11 1.1E-15 132.6 17.0 229 213-486 111-348 (450)
244 PRK14970 DNA polymerase III su 99.3 1.4E-10 3E-15 127.1 20.1 198 213-452 13-216 (367)
245 PRK10865 protein disaggregatio 99.3 2.1E-11 4.5E-16 145.7 14.2 140 532-680 197-353 (857)
246 TIGR02974 phageshock_pspF psp 99.3 3.3E-11 7.2E-16 128.8 14.0 170 533-715 21-234 (329)
247 TIGR03346 chaperone_ClpB ATP-d 99.3 2.4E-11 5.3E-16 145.8 14.4 172 532-713 192-395 (852)
248 PRK14955 DNA polymerase III su 99.3 8.4E-11 1.8E-15 129.5 17.3 200 213-453 12-236 (397)
249 TIGR01650 PD_CobS cobaltochela 99.3 1.5E-11 3.2E-16 128.5 10.7 140 253-414 63-235 (327)
250 PRK06305 DNA polymerase III su 99.3 1.5E-10 3.2E-15 128.8 19.3 197 213-450 13-227 (451)
251 PRK14087 dnaA chromosomal repl 99.3 6.4E-11 1.4E-15 131.7 16.3 192 532-741 139-348 (450)
252 PRK14948 DNA polymerase III su 99.3 1.6E-10 3.4E-15 132.8 19.9 164 534-712 38-228 (620)
253 PRK14954 DNA polymerase III su 99.3 2E-10 4.3E-15 131.3 20.0 185 532-738 36-254 (620)
254 PRK09087 hypothetical protein; 99.3 4.7E-11 1E-15 120.7 13.2 171 534-741 44-222 (226)
255 PRK08451 DNA polymerase III su 99.3 1.4E-10 3.1E-15 129.6 18.2 199 213-453 10-226 (535)
256 PRK14948 DNA polymerase III su 99.3 1.7E-10 3.7E-15 132.5 19.2 196 213-449 12-226 (620)
257 PRK04132 replication factor C 99.3 1E-10 2.2E-15 136.6 17.4 160 532-713 562-738 (846)
258 PRK14971 DNA polymerase III su 99.3 3.3E-10 7E-15 130.3 21.2 159 533-713 38-229 (614)
259 COG2812 DnaX DNA polymerase II 99.3 5.9E-11 1.3E-15 130.9 14.4 180 534-739 38-242 (515)
260 TIGR00382 clpX endopeptidase C 99.3 1.4E-10 3E-15 126.1 17.0 178 534-714 116-384 (413)
261 COG1221 PspF Transcriptional r 99.3 4.2E-11 9.2E-16 128.0 12.7 171 532-715 99-310 (403)
262 TIGR01817 nifA Nif-specific re 99.2 4.2E-11 9.2E-16 137.4 13.7 202 503-735 196-439 (534)
263 PRK15424 propionate catabolism 99.2 8.8E-11 1.9E-15 132.1 15.5 169 534-715 242-466 (538)
264 TIGR02329 propionate_PrpR prop 99.2 1E-10 2.2E-15 131.8 15.7 168 534-714 235-450 (526)
265 PRK06620 hypothetical protein; 99.2 2.3E-10 5.1E-15 114.7 16.7 182 212-453 11-197 (214)
266 PF00308 Bac_DnaA: Bacterial d 99.2 1.4E-10 3.1E-15 116.8 15.2 177 525-713 25-215 (219)
267 COG1220 HslU ATP-dependent pro 99.2 1.7E-10 3.6E-15 117.2 15.4 144 595-741 251-433 (444)
268 COG0593 DnaA ATPase involved i 99.2 1.6E-10 3.5E-15 124.0 16.0 200 523-742 102-314 (408)
269 PRK14954 DNA polymerase III su 99.2 3.1E-10 6.7E-15 129.7 19.0 200 213-453 12-236 (620)
270 TIGR02903 spore_lon_C ATP-depe 99.2 2.8E-10 6.1E-15 131.3 18.8 231 213-485 150-429 (615)
271 PRK14950 DNA polymerase III su 99.2 4.3E-10 9.3E-15 129.6 20.1 181 533-739 37-243 (585)
272 PRK11608 pspF phage shock prot 99.2 1.4E-10 3.1E-15 124.1 14.8 169 534-715 29-241 (326)
273 PRK11388 DNA-binding transcrip 99.2 8.3E-11 1.8E-15 138.0 13.7 169 534-715 348-555 (638)
274 PRK00440 rfc replication facto 99.2 9.3E-10 2E-14 118.2 20.5 209 213-485 13-225 (319)
275 KOG1969 DNA replication checkp 99.2 2.1E-10 4.6E-15 127.0 15.4 164 533-716 325-520 (877)
276 TIGR00678 holB DNA polymerase 99.2 2.1E-10 4.5E-15 113.3 14.1 148 532-702 12-187 (188)
277 PRK13407 bchI magnesium chelat 99.2 3.3E-10 7.1E-15 120.3 16.1 170 212-412 3-216 (334)
278 PRK15429 formate hydrogenlyase 99.2 5.2E-10 1.1E-14 132.1 18.6 170 534-716 399-611 (686)
279 COG0593 DnaA ATPase involved i 99.2 7.6E-10 1.6E-14 118.9 17.8 226 212-489 82-316 (408)
280 PRK10820 DNA-binding transcrip 99.2 3.7E-10 8.1E-15 128.4 15.6 170 534-716 227-439 (520)
281 PRK14950 DNA polymerase III su 99.2 9E-10 1.9E-14 127.0 18.9 197 213-450 12-226 (585)
282 PF05673 DUF815: Protein of un 99.2 7.3E-10 1.6E-14 110.2 15.2 131 531-680 49-206 (249)
283 PRK14971 DNA polymerase III su 99.2 1.3E-09 2.7E-14 125.5 19.4 200 213-453 13-230 (614)
284 TIGR03015 pepcterm_ATPase puta 99.1 1.5E-09 3.3E-14 113.6 17.8 192 534-742 43-267 (269)
285 PRK05022 anaerobic nitric oxid 99.1 5.1E-10 1.1E-14 127.3 15.0 170 534-716 210-422 (509)
286 PRK13407 bchI magnesium chelat 99.1 3.9E-10 8.5E-15 119.7 12.9 130 595-741 129-306 (334)
287 PRK09112 DNA polymerase III su 99.1 1.7E-09 3.7E-14 116.3 17.8 162 533-709 44-243 (351)
288 PRK13531 regulatory ATPase Rav 99.1 8.4E-10 1.8E-14 120.6 15.5 189 534-742 39-284 (498)
289 COG1220 HslU ATP-dependent pro 99.1 1.2E-09 2.7E-14 111.0 15.4 81 325-409 253-346 (444)
290 PRK09087 hypothetical protein; 99.1 5.2E-10 1.1E-14 113.2 12.7 201 212-485 16-221 (226)
291 TIGR00602 rad24 checkpoint pro 99.1 1.1E-09 2.3E-14 125.1 16.0 189 534-737 110-351 (637)
292 TIGR00678 holB DNA polymerase 99.1 1.1E-09 2.5E-14 108.0 14.3 152 254-436 14-183 (188)
293 COG5271 MDN1 AAA ATPase contai 99.1 1.5E-08 3.4E-13 119.0 24.7 136 533-680 1542-1702(4600)
294 TIGR01650 PD_CobS cobaltochela 99.1 1.1E-09 2.3E-14 114.7 13.7 136 534-680 64-232 (327)
295 KOG2227 Pre-initiation complex 99.1 9.4E-10 2E-14 116.7 13.3 221 505-742 152-416 (529)
296 PRK11331 5-methylcytosine-spec 99.1 8.4E-10 1.8E-14 119.6 13.3 124 254-398 194-357 (459)
297 cd00009 AAA The AAA+ (ATPases 99.1 1.7E-09 3.7E-14 101.3 13.5 122 253-397 18-150 (151)
298 PRK05707 DNA polymerase III su 99.1 3E-09 6.4E-14 113.4 16.8 161 531-707 19-204 (328)
299 COG1219 ClpX ATP-dependent pro 99.1 2.1E-09 4.6E-14 108.5 14.5 178 535-712 98-365 (408)
300 PRK09112 DNA polymerase III su 99.1 8.8E-09 1.9E-13 110.8 19.5 193 213-448 19-243 (351)
301 TIGR02030 BchI-ChlI magnesium 99.1 2.4E-09 5.3E-14 114.0 15.0 226 215-486 2-309 (337)
302 CHL00081 chlI Mg-protoporyphyr 99.0 4.4E-09 9.5E-14 112.0 16.6 170 212-412 12-232 (350)
303 cd00009 AAA The AAA+ (ATPases 99.0 2.7E-09 5.8E-14 99.9 13.4 124 533-667 18-151 (151)
304 PHA02244 ATPase-like protein 99.0 3.1E-09 6.8E-14 112.2 14.6 130 254-408 119-269 (383)
305 PRK07471 DNA polymerase III su 99.0 7E-09 1.5E-13 112.1 17.5 161 533-708 40-240 (365)
306 TIGR02030 BchI-ChlI magnesium 99.0 1.4E-09 3E-14 115.8 11.4 130 595-742 132-310 (337)
307 KOG1969 DNA replication checkp 99.0 6.2E-09 1.4E-13 115.6 16.5 175 252-455 324-517 (877)
308 COG2607 Predicted ATPase (AAA+ 99.0 1.4E-08 3E-13 99.1 16.9 165 212-416 55-243 (287)
309 KOG0991 Replication factor C, 99.0 2E-09 4.4E-14 104.0 10.9 160 532-713 46-221 (333)
310 PF07728 AAA_5: AAA domain (dy 99.0 1.9E-10 4E-15 107.7 3.5 109 256-390 1-139 (139)
311 PRK15115 response regulator Gl 99.0 1.3E-09 2.9E-14 122.6 10.8 167 534-715 157-368 (444)
312 PRK05564 DNA polymerase III su 99.0 7.2E-09 1.6E-13 110.8 15.6 180 215-439 2-185 (313)
313 TIGR02915 PEP_resp_reg putativ 99.0 4.3E-09 9.4E-14 118.5 14.0 169 534-716 162-374 (445)
314 COG1224 TIP49 DNA helicase TIP 99.0 2E-08 4.3E-13 103.1 17.2 123 595-739 292-430 (450)
315 PRK07471 DNA polymerase III su 99.0 9.9E-09 2.1E-13 111.0 16.1 180 214-437 16-231 (365)
316 COG3283 TyrR Transcriptional r 99.0 2.9E-09 6.3E-14 109.0 11.0 167 535-716 228-434 (511)
317 PRK10923 glnG nitrogen regulat 99.0 3.6E-09 7.7E-14 120.0 13.1 169 534-715 161-372 (469)
318 COG1224 TIP49 DNA helicase TIP 99.0 5.4E-08 1.2E-12 100.0 20.0 99 368-485 321-431 (450)
319 KOG0745 Putative ATP-dependent 99.0 9.4E-09 2E-13 107.8 14.8 182 535-716 227-510 (564)
320 CHL00081 chlI Mg-protoporyphyr 99.0 2.4E-08 5.1E-13 106.4 18.2 130 595-742 145-323 (350)
321 smart00382 AAA ATPases associa 99.0 4.3E-09 9.4E-14 97.6 10.8 128 534-668 2-147 (148)
322 PRK07399 DNA polymerase III su 99.0 1.7E-08 3.8E-13 107.0 16.5 188 215-447 2-223 (314)
323 smart00382 AAA ATPases associa 98.9 4.9E-09 1.1E-13 97.3 11.0 127 254-399 2-147 (148)
324 TIGR02442 Cob-chelat-sub cobal 98.9 4.4E-09 9.5E-14 122.3 12.8 189 534-742 25-305 (633)
325 TIGR03015 pepcterm_ATPase puta 98.9 1.4E-08 3E-13 106.3 15.4 199 256-487 45-267 (269)
326 PRK05707 DNA polymerase III su 98.9 1E-08 2.3E-13 109.3 14.4 159 252-439 20-198 (328)
327 PHA02244 ATPase-like protein 98.9 1.3E-08 2.8E-13 107.6 14.7 125 534-672 119-265 (383)
328 COG0714 MoxR-like ATPases [Gen 98.9 7.2E-09 1.6E-13 111.5 13.1 139 254-410 43-201 (329)
329 COG0542 clpA ATP-binding subun 98.9 7.8E-09 1.7E-13 118.5 13.4 175 532-713 189-392 (786)
330 PF07724 AAA_2: AAA domain (Cd 98.9 2.9E-09 6.3E-14 102.7 8.5 113 533-648 2-131 (171)
331 PF00158 Sigma54_activat: Sigm 98.9 1.9E-09 4.2E-14 103.6 7.1 112 534-660 22-155 (168)
332 PF07724 AAA_2: AAA domain (Cd 98.9 3.6E-09 7.9E-14 102.0 9.0 119 253-379 2-132 (171)
333 TIGR02442 Cob-chelat-sub cobal 98.9 1.5E-08 3.2E-13 118.0 15.7 164 215-411 2-213 (633)
334 TIGR02031 BchD-ChlD magnesium 98.9 4.6E-09 9.9E-14 120.8 11.2 186 534-742 16-259 (589)
335 TIGR01818 ntrC nitrogen regula 98.9 1.2E-08 2.6E-13 115.5 14.2 169 534-715 157-368 (463)
336 PF07728 AAA_5: AAA domain (dy 98.9 4.7E-10 1E-14 104.9 1.8 112 536-659 1-139 (139)
337 TIGR00764 lon_rel lon-related 98.9 3.5E-08 7.6E-13 113.7 16.8 105 367-486 268-391 (608)
338 COG1219 ClpX ATP-dependent pro 98.9 8E-09 1.7E-13 104.5 9.9 103 255-362 98-203 (408)
339 PRK06964 DNA polymerase III su 98.9 4.9E-08 1.1E-12 104.1 16.1 158 530-706 17-225 (342)
340 PRK08058 DNA polymerase III su 98.9 3.7E-08 8E-13 105.7 15.3 155 221-410 8-180 (329)
341 COG2607 Predicted ATPase (AAA+ 98.9 9.8E-08 2.1E-12 93.3 16.4 156 500-680 57-238 (287)
342 PRK08058 DNA polymerase III su 98.9 4.6E-08 9.9E-13 105.0 15.7 151 532-706 26-204 (329)
343 PRK07993 DNA polymerase III su 98.9 5.2E-08 1.1E-12 104.2 16.0 160 532-707 22-205 (334)
344 PRK13531 regulatory ATPase Rav 98.9 1.7E-08 3.7E-13 110.4 12.4 156 220-411 21-193 (498)
345 PRK11361 acetoacetate metaboli 98.8 1.7E-08 3.6E-13 114.2 12.2 168 534-715 166-377 (457)
346 COG0470 HolB ATPase involved i 98.8 4.8E-08 1E-12 105.2 15.0 153 536-713 26-206 (325)
347 PRK04132 replication factor C 98.8 5E-08 1.1E-12 114.4 16.1 163 258-450 568-736 (846)
348 PRK10365 transcriptional regul 98.8 1.4E-08 3.1E-13 114.2 11.3 168 533-715 161-373 (441)
349 COG0714 MoxR-like ATPases [Gen 98.8 8.4E-09 1.8E-13 111.0 8.6 137 534-680 43-202 (329)
350 COG3284 AcoR Transcriptional a 98.8 9.6E-09 2.1E-13 113.7 9.0 167 535-716 337-542 (606)
351 smart00350 MCM minichromosome 98.8 4.3E-08 9.3E-13 111.4 14.6 136 254-413 236-401 (509)
352 KOG1514 Origin recognition com 98.8 2.5E-07 5.4E-12 103.1 19.6 209 256-487 424-656 (767)
353 COG0470 HolB ATPase involved i 98.8 7.9E-08 1.7E-12 103.4 15.7 129 256-408 26-177 (325)
354 PRK06964 DNA polymerase III su 98.8 4E-08 8.7E-13 104.7 13.0 138 252-411 19-203 (342)
355 PF01078 Mg_chelatase: Magnesi 98.8 3.6E-09 7.7E-14 103.3 4.6 47 215-279 1-47 (206)
356 PRK08769 DNA polymerase III su 98.8 8.9E-08 1.9E-12 101.2 15.4 158 532-706 24-208 (319)
357 PRK07399 DNA polymerase III su 98.8 1.3E-07 2.8E-12 100.4 16.5 163 532-710 24-225 (314)
358 TIGR00602 rad24 checkpoint pro 98.8 1.9E-07 4.1E-12 107.0 18.7 209 213-451 80-326 (637)
359 PF13177 DNA_pol3_delta2: DNA 98.8 7.3E-08 1.6E-12 92.4 13.0 141 223-398 1-160 (162)
360 PRK05564 DNA polymerase III su 98.8 1.1E-07 2.5E-12 101.6 15.8 152 532-704 24-188 (313)
361 PRK06871 DNA polymerase III su 98.8 2.3E-07 5E-12 98.2 17.4 158 533-706 23-203 (325)
362 PF05621 TniB: Bacterial TniB 98.8 1.7E-07 3.7E-12 96.4 15.8 179 254-457 61-273 (302)
363 KOG0745 Putative ATP-dependent 98.8 3.1E-08 6.8E-13 104.0 10.3 102 255-361 227-331 (564)
364 TIGR02974 phageshock_pspF psp 98.8 1.2E-07 2.5E-12 101.6 15.0 179 253-453 21-233 (329)
365 PRK06871 DNA polymerase III su 98.8 2E-07 4.4E-12 98.6 16.5 136 254-411 24-178 (325)
366 PRK11331 5-methylcytosine-spec 98.7 6.9E-08 1.5E-12 104.9 12.7 135 534-679 194-370 (459)
367 PF12775 AAA_7: P-loop contain 98.7 5E-08 1.1E-12 101.4 11.0 150 253-415 32-196 (272)
368 PRK08769 DNA polymerase III su 98.7 2E-07 4.3E-12 98.6 15.5 158 253-441 25-205 (319)
369 PRK11608 pspF phage shock prot 98.7 6.9E-08 1.5E-12 103.5 12.1 199 221-453 8-240 (326)
370 TIGR00764 lon_rel lon-related 98.7 3.5E-07 7.5E-12 105.5 18.7 127 596-740 219-390 (608)
371 KOG0991 Replication factor C, 98.7 1.1E-07 2.4E-12 92.2 12.0 139 213-391 23-165 (333)
372 COG3829 RocR Transcriptional r 98.7 5.1E-08 1.1E-12 106.2 10.9 199 212-451 240-477 (560)
373 TIGR01817 nifA Nif-specific re 98.7 7.7E-08 1.7E-12 110.6 13.0 206 213-453 192-428 (534)
374 TIGR02031 BchD-ChlD magnesium 98.7 1.3E-07 2.8E-12 108.9 14.8 138 255-412 17-174 (589)
375 PF06068 TIP49: TIP49 C-termin 98.7 1.4E-07 3E-12 98.8 13.5 102 595-711 279-396 (398)
376 PRK15429 formate hydrogenlyase 98.7 1.5E-07 3.2E-12 111.4 15.6 198 214-453 373-609 (686)
377 PRK05022 anaerobic nitric oxid 98.7 9E-08 1.9E-12 109.1 13.1 200 221-454 189-421 (509)
378 PRK10820 DNA-binding transcrip 98.7 8.8E-08 1.9E-12 109.1 12.4 206 212-453 199-437 (520)
379 TIGR00368 Mg chelatase-related 98.7 1.2E-07 2.6E-12 106.4 13.2 183 533-739 210-497 (499)
380 smart00350 MCM minichromosome 98.7 8.6E-08 1.9E-12 108.9 11.8 183 535-739 237-502 (509)
381 PF07726 AAA_3: ATPase family 98.7 7E-09 1.5E-13 92.8 2.3 112 536-660 1-130 (131)
382 PF03215 Rad17: Rad17 cell cyc 98.7 4.7E-07 1E-11 101.9 17.1 189 510-712 26-269 (519)
383 PRK07993 DNA polymerase III su 98.7 3.4E-07 7.3E-12 98.0 15.1 158 252-439 22-199 (334)
384 TIGR02329 propionate_PrpR prop 98.7 1.1E-07 2.4E-12 107.4 12.0 200 213-453 208-450 (526)
385 PF07726 AAA_3: ATPase family 98.7 6.2E-09 1.3E-13 93.1 1.4 110 256-391 1-130 (131)
386 PRK08116 hypothetical protein; 98.7 1.1E-07 2.3E-12 98.9 10.7 132 254-411 114-259 (268)
387 PRK15424 propionate catabolism 98.7 1.4E-07 3E-12 106.5 12.0 198 214-452 216-464 (538)
388 KOG2035 Replication factor C, 98.7 1.9E-06 4.1E-11 86.0 18.2 188 532-742 32-259 (351)
389 TIGR00368 Mg chelatase-related 98.6 2.2E-07 4.7E-12 104.3 13.2 47 214-278 189-235 (499)
390 PRK11388 DNA-binding transcrip 98.6 1E-07 2.2E-12 112.1 11.0 204 213-452 321-553 (638)
391 COG1221 PspF Transcriptional r 98.6 1.3E-07 2.7E-12 101.6 10.7 201 214-456 75-312 (403)
392 PRK06090 DNA polymerase III su 98.6 9.7E-07 2.1E-11 93.3 17.1 157 532-707 23-202 (319)
393 PF06068 TIP49: TIP49 C-termin 98.6 5.2E-07 1.1E-11 94.6 14.7 74 323-415 279-364 (398)
394 KOG1942 DNA helicase, TBP-inte 98.6 1.5E-06 3.2E-11 87.1 16.7 124 594-739 296-436 (456)
395 KOG0990 Replication factor C, 98.6 3.6E-07 7.8E-12 93.1 11.9 167 530-715 58-241 (360)
396 PRK09862 putative ATP-dependen 98.6 6.1E-07 1.3E-11 100.2 14.8 183 533-739 209-490 (506)
397 KOG2227 Pre-initiation complex 98.6 1.7E-06 3.7E-11 92.4 16.9 206 220-455 151-381 (529)
398 PF00158 Sigma54_activat: Sigm 98.6 1.1E-07 2.5E-12 91.4 6.7 100 254-377 22-144 (168)
399 PRK06090 DNA polymerase III su 98.6 1.2E-06 2.5E-11 92.7 14.9 136 253-410 24-178 (319)
400 PF13177 DNA_pol3_delta2: DNA 98.6 2.9E-07 6.3E-12 88.3 9.5 119 532-669 17-162 (162)
401 PF01637 Arch_ATPase: Archaeal 98.6 7.5E-07 1.6E-11 90.7 13.2 182 223-438 3-228 (234)
402 PRK09862 putative ATP-dependen 98.5 1.2E-06 2.6E-11 97.9 15.0 123 253-401 209-390 (506)
403 COG1239 ChlI Mg-chelatase subu 98.5 8.2E-07 1.8E-11 94.5 12.5 169 213-413 13-233 (423)
404 PRK08699 DNA polymerase III su 98.5 6.9E-07 1.5E-11 95.3 12.1 137 252-410 19-183 (325)
405 COG2204 AtoC Response regulato 98.5 9.1E-07 2E-11 96.8 12.3 194 221-455 143-376 (464)
406 COG1239 ChlI Mg-chelatase subu 98.5 2.2E-06 4.8E-11 91.2 14.6 75 594-679 144-230 (423)
407 TIGR02655 circ_KaiC circadian 98.5 3.1E-06 6.8E-11 95.8 16.7 83 525-607 254-366 (484)
408 PF14532 Sigma54_activ_2: Sigm 98.5 2.6E-07 5.6E-12 86.2 6.3 109 533-668 20-138 (138)
409 KOG1970 Checkpoint RAD17-RFC c 98.5 8.8E-06 1.9E-10 88.6 18.4 188 510-711 89-320 (634)
410 PRK08699 DNA polymerase III su 98.4 2.3E-06 5E-11 91.3 13.7 134 532-681 19-185 (325)
411 PRK12377 putative replication 98.4 4.9E-07 1.1E-11 92.3 8.2 102 254-377 101-206 (248)
412 COG3604 FhlA Transcriptional r 98.4 1.5E-06 3.3E-11 93.6 11.7 213 220-458 224-460 (550)
413 PF13173 AAA_14: AAA domain 98.4 1.2E-06 2.7E-11 80.5 9.6 120 535-673 3-127 (128)
414 PTZ00111 DNA replication licen 98.4 3.4E-06 7.4E-11 98.7 15.2 167 221-408 452-653 (915)
415 PRK08181 transposase; Validate 98.4 5.7E-07 1.2E-11 93.0 8.0 102 253-377 105-209 (269)
416 PRK06526 transposase; Provisio 98.4 3.4E-07 7.5E-12 94.1 6.2 102 253-377 97-201 (254)
417 PRK07952 DNA replication prote 98.4 6.8E-07 1.5E-11 91.1 7.9 101 255-377 100-205 (244)
418 PF03215 Rad17: Rad17 cell cyc 98.4 1.3E-05 2.9E-10 90.3 17.9 213 214-454 16-269 (519)
419 PTZ00111 DNA replication licen 98.4 2.7E-06 5.8E-11 99.6 12.6 122 534-669 492-645 (915)
420 PF13401 AAA_22: AAA domain; P 98.3 1.6E-06 3.6E-11 79.8 8.6 100 534-645 4-126 (131)
421 KOG1942 DNA helicase, TBP-inte 98.3 1.4E-05 2.9E-10 80.4 15.1 110 322-453 296-418 (456)
422 COG1484 DnaC DNA replication p 98.3 1.7E-06 3.8E-11 89.0 9.0 69 253-334 104-179 (254)
423 TIGR02915 PEP_resp_reg putativ 98.3 1.9E-06 4.2E-11 97.0 10.0 178 254-453 162-372 (445)
424 PRK08939 primosomal protein Dn 98.3 1.1E-06 2.4E-11 92.9 7.4 103 253-377 155-261 (306)
425 PRK09183 transposase/IS protei 98.3 1.3E-06 2.8E-11 90.4 7.7 75 252-335 100-177 (259)
426 PRK06921 hypothetical protein; 98.3 4.4E-06 9.6E-11 86.7 11.4 41 253-293 116-159 (266)
427 PRK08181 transposase; Validate 98.3 1.4E-06 3E-11 90.1 7.4 101 534-647 106-209 (269)
428 PRK08116 hypothetical protein; 98.3 2E-06 4.4E-11 89.4 8.4 144 513-669 94-250 (268)
429 PF01695 IstB_IS21: IstB-like 98.3 6.5E-07 1.4E-11 87.1 4.3 72 253-334 46-120 (178)
430 KOG0990 Replication factor C, 98.3 2E-06 4.4E-11 87.7 7.8 137 256-414 64-205 (360)
431 PF01637 Arch_ATPase: Archaeal 98.3 1.6E-05 3.4E-10 80.8 14.6 166 533-704 19-232 (234)
432 PRK05818 DNA polymerase III su 98.3 1.5E-05 3.2E-10 81.0 13.7 159 532-710 5-194 (261)
433 PRK12377 putative replication 98.3 5.1E-06 1.1E-10 84.9 10.6 120 512-647 83-206 (248)
434 PRK06526 transposase; Provisio 98.3 1.2E-06 2.5E-11 90.3 5.9 101 533-647 97-201 (254)
435 PF13173 AAA_14: AAA domain 98.3 7.5E-06 1.6E-10 75.3 10.7 119 255-403 3-126 (128)
436 PRK06835 DNA replication prote 98.2 2.6E-06 5.7E-11 90.7 8.5 70 255-334 184-258 (329)
437 KOG2035 Replication factor C, 98.2 1.6E-05 3.4E-10 79.6 13.0 160 256-436 36-220 (351)
438 COG0606 Predicted ATPase with 98.2 1.3E-06 2.9E-11 94.1 6.0 48 213-278 175-222 (490)
439 PF13401 AAA_22: AAA domain; P 98.2 5E-06 1.1E-10 76.6 9.0 88 254-360 4-113 (131)
440 PF12774 AAA_6: Hydrolytic ATP 98.2 4.4E-05 9.6E-10 77.3 16.4 164 535-714 33-227 (231)
441 PRK13765 ATP-dependent proteas 98.2 1.3E-05 2.7E-10 92.4 14.0 50 212-279 26-75 (637)
442 KOG2680 DNA helicase TIP49, TB 98.2 4.6E-05 1E-09 76.9 15.7 123 595-739 289-427 (454)
443 COG3267 ExeA Type II secretory 98.2 2.8E-05 6E-10 77.5 14.0 181 257-455 54-255 (269)
444 PRK11361 acetoacetate metaboli 98.2 5.1E-06 1.1E-10 94.0 10.1 176 255-452 167-375 (457)
445 PF14532 Sigma54_activ_2: Sigm 98.2 2.9E-06 6.3E-11 79.1 6.6 88 253-376 20-109 (138)
446 PRK09302 circadian clock prote 98.2 4.5E-05 9.8E-10 87.3 17.4 28 250-277 27-54 (509)
447 PRK09183 transposase/IS protei 98.2 3.7E-06 8E-11 87.0 7.7 103 533-647 101-206 (259)
448 COG5245 DYN1 Dynein, heavy cha 98.2 7.2E-05 1.6E-09 89.0 18.4 186 251-454 1491-1717(3164)
449 PRK13765 ATP-dependent proteas 98.2 2.1E-05 4.5E-10 90.7 14.2 127 595-739 227-398 (637)
450 PRK10923 glnG nitrogen regulat 98.2 1.6E-05 3.4E-10 90.3 13.1 179 253-453 160-371 (469)
451 PRK13406 bchD magnesium chelat 98.2 7.8E-06 1.7E-10 93.4 10.5 190 533-742 24-251 (584)
452 PF05729 NACHT: NACHT domain 98.2 1.4E-05 3E-10 76.6 10.8 141 256-413 2-164 (166)
453 COG1484 DnaC DNA replication p 98.2 7.4E-06 1.6E-10 84.4 9.2 113 514-647 90-209 (254)
454 PF01078 Mg_chelatase: Magnesi 98.1 1.3E-06 2.9E-11 85.4 3.4 24 535-558 23-46 (206)
455 TIGR01818 ntrC nitrogen regula 98.1 1.5E-05 3.2E-10 90.4 11.9 201 221-454 136-368 (463)
456 PRK08939 primosomal protein Dn 98.1 9.4E-06 2E-10 85.8 9.6 72 533-606 155-229 (306)
457 PRK07132 DNA polymerase III su 98.1 8E-05 1.7E-09 78.3 16.4 149 534-706 18-184 (299)
458 KOG1051 Chaperone HSP104 and r 98.1 2.1E-05 4.5E-10 92.1 12.4 128 221-377 564-711 (898)
459 PRK06921 hypothetical protein; 98.1 2E-05 4.2E-10 81.9 10.9 123 514-646 97-224 (266)
460 PRK07952 DNA replication prote 98.1 1E-05 2.2E-10 82.5 8.5 88 514-607 83-175 (244)
461 PRK05917 DNA polymerase III su 98.1 3.3E-05 7.2E-10 80.2 12.2 124 254-399 19-154 (290)
462 PRK15115 response regulator Gl 98.1 3.6E-05 7.7E-10 86.8 13.4 177 254-452 157-366 (444)
463 PF01695 IstB_IS21: IstB-like 98.1 2E-06 4.3E-11 83.8 2.7 102 533-647 46-150 (178)
464 PRK06835 DNA replication prote 98.0 1.3E-05 2.9E-10 85.4 8.6 118 512-646 165-288 (329)
465 COG4650 RtcR Sigma54-dependent 98.0 3.2E-05 6.9E-10 77.7 10.4 84 523-607 197-295 (531)
466 KOG2680 DNA helicase TIP49, TB 98.0 0.00015 3.2E-09 73.4 15.0 91 377-486 339-429 (454)
467 PF12774 AAA_6: Hydrolytic ATP 98.0 3.5E-05 7.7E-10 78.0 11.0 126 254-408 32-176 (231)
468 COG0606 Predicted ATPase with 98.0 2.2E-05 4.8E-10 84.9 9.9 36 697-739 448-483 (490)
469 PRK05818 DNA polymerase III su 98.0 4.6E-05 9.9E-10 77.4 11.1 127 252-399 5-147 (261)
470 smart00763 AAA_PrkA PrkA AAA d 98.0 1.5E-05 3.4E-10 84.6 7.9 79 221-308 53-142 (361)
471 PRK05917 DNA polymerase III su 98.0 7.7E-05 1.7E-09 77.5 12.7 123 532-669 17-155 (290)
472 KOG2228 Origin recognition com 98.0 5.7E-05 1.2E-09 77.8 11.3 166 221-412 26-219 (408)
473 PF00931 NB-ARC: NB-ARC domain 98.0 8.7E-05 1.9E-09 78.3 13.4 138 523-680 9-169 (287)
474 KOG2228 Origin recognition com 98.0 4.5E-05 9.8E-10 78.5 10.5 160 505-680 26-218 (408)
475 PF03969 AFG1_ATPase: AFG1-lik 97.9 2.1E-05 4.5E-10 85.0 8.1 103 251-377 59-168 (362)
476 PF00931 NB-ARC: NB-ARC domain 97.9 0.00015 3.2E-09 76.6 14.6 157 252-438 17-196 (287)
477 PRK06851 hypothetical protein; 97.9 0.00014 3E-09 78.2 14.2 36 534-569 214-252 (367)
478 PRK10365 transcriptional regul 97.9 1.6E-05 3.5E-10 89.5 7.3 178 253-452 161-371 (441)
479 PF02933 CDC48_2: Cell divisio 97.9 3.1E-05 6.7E-10 61.6 6.7 58 123-189 2-59 (64)
480 PRK07276 DNA polymerase III su 97.9 0.00028 6.1E-09 73.6 15.7 155 532-707 22-198 (290)
481 PF00910 RNA_helicase: RNA hel 97.9 2.6E-05 5.6E-10 69.2 6.9 23 257-279 1-23 (107)
482 COG3283 TyrR Transcriptional r 97.9 0.00012 2.7E-09 75.7 12.1 204 212-454 199-433 (511)
483 PRK07132 DNA polymerase III su 97.9 0.00017 3.6E-09 75.9 13.3 135 255-410 19-160 (299)
484 PRK07276 DNA polymerase III su 97.9 0.00023 4.9E-09 74.3 13.6 132 253-409 23-172 (290)
485 PRK13406 bchD magnesium chelat 97.8 7.8E-05 1.7E-09 85.4 10.8 199 255-486 26-250 (584)
486 PF05729 NACHT: NACHT domain 97.8 7.7E-05 1.7E-09 71.4 9.1 140 536-680 2-162 (166)
487 cd01120 RecA-like_NTPases RecA 97.8 0.00017 3.6E-09 68.8 11.4 73 537-609 2-100 (165)
488 KOG1968 Replication factor C, 97.8 4.8E-05 1E-09 89.9 8.9 162 536-710 359-535 (871)
489 KOG2543 Origin recognition com 97.8 0.00066 1.4E-08 71.3 15.9 178 525-712 21-232 (438)
490 COG1618 Predicted nucleotide k 97.8 0.00041 8.9E-09 64.4 12.0 29 252-280 3-31 (179)
491 PHA00729 NTP-binding motif con 97.7 9.2E-05 2E-09 73.9 8.0 25 255-279 18-42 (226)
492 PF00493 MCM: MCM2/3/5 family 97.7 5.8E-05 1.3E-09 81.1 7.1 156 221-414 26-223 (331)
493 cd01120 RecA-like_NTPases RecA 97.7 6.8E-05 1.5E-09 71.5 6.9 23 257-279 2-24 (165)
494 TIGR02237 recomb_radB DNA repa 97.7 0.00012 2.5E-09 73.5 8.5 41 250-290 8-50 (209)
495 COG1373 Predicted ATPase (AAA+ 97.7 0.0006 1.3E-08 75.1 14.5 122 536-675 39-161 (398)
496 COG1618 Predicted nucleotide k 97.7 0.00022 4.8E-09 66.1 9.0 26 533-558 4-29 (179)
497 KOG3595 Dyneins, heavy chain [ 97.7 0.0017 3.6E-08 82.5 19.8 148 255-415 128-289 (1395)
498 PF12775 AAA_7: P-loop contain 97.7 0.00015 3.2E-09 75.5 8.9 135 534-679 33-191 (272)
499 PF03969 AFG1_ATPase: AFG1-lik 97.7 0.00015 3.2E-09 78.5 9.0 111 530-653 58-175 (362)
500 PLN03210 Resistant to P. syrin 97.6 0.00078 1.7E-08 84.7 16.3 185 213-438 180-389 (1153)
No 1
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-127 Score=993.92 Aligned_cols=699 Identities=56% Similarity=0.883 Sum_probs=648.9
Q ss_pred CCCceeEEEeecCCcccccccEEEeChhhhcccCCCCCCceEEEEeCCcEEEEEeeCCCCCCCcEeecHHHHhccCccCC
Q 004584 9 SSGVTTMNVINTPSADLALTNLAYCSPADLLNFRVPNSNLFLASVAGDSFVLSLASHPSVNKGQIALNSVQRRHAKVSTG 88 (744)
Q Consensus 9 ~~~~~~l~v~~~p~~~~a~tn~v~vs~~~~~~l~~~g~~~~~v~i~~~~~v~~~~~~~~~~~~~i~~~~~~r~~~~~~~~ 88 (744)
++..+.++|.+||++++++|||+||||.||.+. .|+.+.+-+|+|+.+.++++++|.|++|..||+|+++++|
T Consensus 5 ~~~~~~~~v~k~ps~e~altn~a~v~~~DF~~~-------~~~~vd~~~~~Fs~~~~~~i~~g~i~fs~~qR~wa~~Sl~ 77 (744)
T KOG0741|consen 5 VSNIKAFQVTKCPSNELALTNCAYVSPSDFRQF-------QVIIVDNFHYVFSTEFTPSIPPGNIGFSLPQRKWAGWSLG 77 (744)
T ss_pred cccceeeeeecCCchhhhccCcceeCccccccc-------eeeEEeeeeEEEEeeccCCCCCceeccchhhhhhhhcccC
Confidence 445778999999999999999999999999753 3545533479999999999999999999999999999999
Q ss_pred CeEEEEEeCCC-CcceeEeEEEEeeeeecCC-cccccCHHHHHHHHHHHhcCCccccCcEEEEEEcC-eEEEEEEEEeee
Q 004584 89 DHVSLNRFIPP-EDFNLALLTVELEFVKKGS-KNEQVDAVLLANQLRKRFINQVMTAGQRVVFEYHG-NNYIFTVNGAAV 165 (744)
Q Consensus 89 ~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~v~~~~~ 165 (744)
|.|.|+|+.++ ...+++.++++++|.+++. +...+|.++++..|+.+|.+|++++||.+.++|.+ ..+.++|.+++.
T Consensus 78 qev~V~~~~~~~~~~~l~~m~le~dF~~k~~~~sep~Dad~ma~qF~~~y~~q~fsvgQ~~~f~f~~~~~l~l~v~~ie~ 157 (744)
T KOG0741|consen 78 QEVEVKPFTFDGSCDYLGSMTLEIDFLNKKNTTSEPFDADEMAKQFKRQYNSQAFSVGQQLVFEFNGNKLLGLKVKDIEA 157 (744)
T ss_pred ceeEEEecccCcccccceeEEEEehhhhcCCCCCCCCCHHHHHHHHHHHhcCcccCCccEEEEEecCceEeeeEEEEEee
Confidence 99999999877 4468999999999998875 56789999999999999999999999999999998 446788888765
Q ss_pred c------Ccc---cccccccceecCCcEEEEEecCCCceeeeccc--cCccccccccCCccccccCcCchHHHHHHHHHH
Q 004584 166 E------GQE---KSNALERGIITNETYFVFEASNDSGIKIVNQR--EGANSNIFRHKEFNLQSLGIGGLSAEFADIFRR 234 (744)
Q Consensus 166 ~------~~~---~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~igGl~~~~~~i~~~ 234 (744)
- +.. ......+|+++++|.|.|.+...+.+++.++. ++....++. |+|+|+++||||||+++..|||+
T Consensus 158 ~D~~~~~~~~a~~~~~~~~~G~l~~nT~i~F~k~~~s~lnL~~~~~~k~~~n~ii~-Pdf~Fe~mGIGGLd~EFs~IFRR 236 (744)
T KOG0741|consen 158 FDPGISEGESAVTKRQKIERGLLLGNTQIVFEKAENSSLNLIGKSKTKPASNSIIN-PDFNFESMGIGGLDKEFSDIFRR 236 (744)
T ss_pred eccccccCCcccccccceeeeEeecCcEEEEEeccCcceEeeccccccchhccccC-CCCChhhcccccchHHHHHHHHH
Confidence 1 111 11345689999999999999999999998774 333444455 99999999999999999999999
Q ss_pred HHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhcccccchHHHHHHHHHHHHhcc
Q 004584 235 AFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQ 314 (744)
Q Consensus 235 ~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~ 314 (744)
+|.++++||++.+++|++|.||+|||||||||||++||.+++.|+++++++|||+++++||+|++|+++|++|+.|++.+
T Consensus 237 AFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~ 316 (744)
T KOG0741|consen 237 AFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQ 316 (744)
T ss_pred HHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEE
Q 004584 315 RTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQV 394 (744)
Q Consensus 315 ~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i 394 (744)
+..|..++.|||++||||++|++|++..+++++++.+++|||+.|||+++.+|++|||+|||.|+||+||+|||||+.++
T Consensus 317 r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqm 396 (744)
T KOG0741|consen 317 RRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQM 396 (744)
T ss_pred HhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHHHHHHHhccccC--CCCCCCccccc
Q 004584 395 EISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMD--DLTKPVDEESI 472 (744)
Q Consensus 395 ~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~--~~~~~~~~~~~ 472 (744)
+|.+||+++|.+||++|+++|..+..+..++|+.+||..|.+||||+|+.+++.|.++|++|++... ....+...+.+
T Consensus 397 EIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~l 476 (744)
T KOG0741|consen 397 EISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENL 476 (744)
T ss_pred EEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhhe
Confidence 9999999999999999999999999999999999999999999999999999999999999998766 33344567889
Q ss_pred eeehhHHHHHHhhhccCCcccccccccccccceeecCcchhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHH
Q 004584 473 KVTMDDFLHALYEIVPAFGASTDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAA 552 (744)
Q Consensus 473 ~it~~df~~al~~~~Ps~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~ 552 (744)
+|+++||..|+++++|+|+.++++++....+|++.|+..+.++++..+.++++++.+.+.+..++||.||||+|||++|.
T Consensus 477 kV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA 556 (744)
T KOG0741|consen 477 KVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAA 556 (744)
T ss_pred eecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCC
Q 004584 553 TAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP 632 (744)
Q Consensus 553 ~~a~~~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~ 632 (744)
.+|..+++|||++.+|+.++|.+|.+++.+++++|++||+++.+||++|+|++|++|+++||||||.++|+|+.++++.|
T Consensus 557 ~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~p 636 (744)
T KOG0741|consen 557 KIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQP 636 (744)
T ss_pred HHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEeCCCCCCCCccccccccceEEEcCCCC-HHHHHHHHHHccCCCHHHHHHHHHhCC----CCcHHHHHHHH
Q 004584 633 PKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLK-TDDAKKVLKQLNVFAEEDVDSASEALN----DMPIKKLYMLI 707 (744)
Q Consensus 633 ~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~~-~~~~~~Il~~~~~~~~~~~~~~~~~~~----~g~ir~l~~~l 707 (744)
+++++++|+|||++.+.|..+.+..+|+..+++|.++ .+++.++++..+.|++.+...+..... ...|+++++++
T Consensus 637 pkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n~fsd~~~~~~~~~~~~~~~~vgIKklL~li 716 (744)
T KOG0741|consen 637 PKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEELNIFSDDEVRAIAEQLLSKKVNVGIKKLLMLI 716 (744)
T ss_pred CCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHccCCCcchhHHHHHHHhccccchhHHHHHHHH
Confidence 9999999999999999999999999999999999999 699999999999999888766554433 67799999999
Q ss_pred HHHHhccc
Q 004584 708 EMAAQGEQ 715 (744)
Q Consensus 708 ~~a~~~a~ 715 (744)
++|.+..+
T Consensus 717 e~a~q~e~ 724 (744)
T KOG0741|consen 717 EMARQDEQ 724 (744)
T ss_pred HHHhccCc
Confidence 99998754
No 2
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-87 Score=705.70 Aligned_cols=510 Identities=26% Similarity=0.395 Sum_probs=430.5
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccch
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l 291 (744)
+++.|++ |||+|+.+.++ .+++.. +.+|+.|..+|+.||+|||||||||||||+||+++|.++ +.+++.++++++
T Consensus 185 snv~f~d--iGG~d~~~~el-~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel-~vPf~~isApei 259 (802)
T KOG0733|consen 185 SNVSFSD--IGGLDKTLAEL-CELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL-GVPFLSISAPEI 259 (802)
T ss_pred CCcchhh--ccChHHHHHHH-HHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc-CCceEeecchhh
Confidence 5778999 99999999999 677766 889999999999999999999999999999999999998 689999999999
Q ss_pred hcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCC----Cc
Q 004584 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESL----NN 367 (744)
Q Consensus 292 ~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~----~~ 367 (744)
++.+.|++|+++|++|+.|.... |||+||||||++.|+|...+ .+..++++.|||+.||++... ..
T Consensus 260 vSGvSGESEkkiRelF~~A~~~a--------PcivFiDeIDAI~pkRe~aq--reMErRiVaQLlt~mD~l~~~~~~g~~ 329 (802)
T KOG0733|consen 260 VSGVSGESEKKIRELFDQAKSNA--------PCIVFIDEIDAITPKREEAQ--REMERRIVAQLLTSMDELSNEKTKGDP 329 (802)
T ss_pred hcccCcccHHHHHHHHHHHhccC--------CeEEEeecccccccchhhHH--HHHHHHHHHHHHHhhhcccccccCCCC
Confidence 99999999999999999999875 88999999999999998754 378899999999999998654 57
Q ss_pred EEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHH
Q 004584 368 VLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAK 447 (744)
Q Consensus 368 v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~ 447 (744)
|+|||+||||+.+||+|+|+|||+++|.+..|++.+|.+||+..++++. +..+.++.+||..|.||+||||.+||.
T Consensus 330 VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lr----l~g~~d~~qlA~lTPGfVGADL~AL~~ 405 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLR----LSGDFDFKQLAKLTPGFVGADLMALCR 405 (802)
T ss_pred eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCC----CCCCcCHHHHHhcCCCccchhHHHHHH
Confidence 9999999999999999999999999999999999999999999999998 678999999999999999999999999
Q ss_pred HHHHHHHHhccccCCC--C-----CC------------------------------------------CccccceeehhH
Q 004584 448 SAVSFALNRQLSMDDL--T-----KP------------------------------------------VDEESIKVTMDD 478 (744)
Q Consensus 448 ~A~~~a~~r~~~~~~~--~-----~~------------------------------------------~~~~~~~it~~d 478 (744)
+|+..|++|.+..... . +. .....+.|+.+|
T Consensus 406 ~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eD 485 (802)
T KOG0733|consen 406 EAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFED 485 (802)
T ss_pred HHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHH
Confidence 9999999997652210 0 00 011235688999
Q ss_pred HHHHHhhhccCCccc----ccccccccccceeecCcchhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHH
Q 004584 479 FLHALYEIVPAFGAS----TDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATA 554 (744)
Q Consensus 479 f~~al~~~~Ps~~~~----~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~ 554 (744)
|..|+..++|++.+. .+++.|..++++..+..++...+.++.++.+.++..+...|.++|||||||||||.+||++
T Consensus 486 F~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAV 565 (802)
T KOG0733|consen 486 FEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAV 565 (802)
T ss_pred HHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHH
Confidence 999999999998764 5678888888888888888888888888899999999999999999999999999999999
Q ss_pred HhhcCCCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhhccCCC-CcchhHHHHHHHHHHhccCCC
Q 004584 555 GIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPI-GPRFSNIISQTMLVLLKRLPP 633 (744)
Q Consensus 555 a~~~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~~~-g~~~~~~~~~~Ll~~l~~~~~ 633 (744)
|++++.+|++|++|++ +.+|.++++.+++.+|.+|+.+.||||||||+|+|.+.|+. +...+.++.++||++|+++ .
T Consensus 566 ANEag~NFisVKGPEL-lNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl-~ 643 (802)
T KOG0733|consen 566 ANEAGANFISVKGPEL-LNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGL-E 643 (802)
T ss_pred hhhccCceEeecCHHH-HHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccc-c
Confidence 9999999999999995 45677777779999999999999999999999999998864 3456789999999999998 4
Q ss_pred CCCcEEEEEeCCCCCCCCccccc-cccceEEEcCCCCHHHHHHHHHHcc------CCCHHHHHHHHHhCC--CCcHHHHH
Q 004584 634 KGKKLLVIGTTSEVSFLDSVGIC-DAFSVTYHVPTLKTDDAKKVLKQLN------VFAEEDVDSASEALN--DMPIKKLY 704 (744)
Q Consensus 634 ~~~~v~vi~~tn~~~~l~~~~l~-~rf~~~i~~p~~~~~~~~~Il~~~~------~~~~~~~~~~~~~~~--~g~ir~l~ 704 (744)
.++.|.||||||+||.+|++.|| +||+..+++++|+.+|+..||+..- .-.+-++.++..... +.+...|-
T Consensus 644 ~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLa 723 (802)
T KOG0733|consen 644 ERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLA 723 (802)
T ss_pred cccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHH
Confidence 56789999999999999999888 9999999999999999999999631 122233444443332 34444444
Q ss_pred HHHHHHHhcccCCcc---------cccccCCCCcchhhHHHHHHHHh
Q 004584 705 MLIEMAAQGEQGGAA---------EAIYSGREKIKISHFYDCLQDMV 742 (744)
Q Consensus 705 ~~l~~a~~~a~~~~~---------~a~~~g~~~It~e~~~~al~~~~ 742 (744)
.+++.|...|-.... -+..+....+|..||++|+..+.
T Consensus 724 aLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~ 770 (802)
T KOG0733|consen 724 ALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIR 770 (802)
T ss_pred HHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcC
Confidence 444443332211000 01111134578889999998763
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-80 Score=668.38 Aligned_cols=627 Identities=26% Similarity=0.369 Sum_probs=512.3
Q ss_pred EEEeChhhhcccCC-CCCCceEEEEeCCc---EEEEEeeCCCCCCCcEeecHHHHhccCccCCCeEEEEEeCCCCcceeE
Q 004584 30 LAYCSPADLLNFRV-PNSNLFLASVAGDS---FVLSLASHPSVNKGQIALNSVQRRHAKVSTGDHVSLNRFIPPEDFNLA 105 (744)
Q Consensus 30 ~v~vs~~~~~~l~~-~g~~~~~v~i~~~~---~v~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~v~~~~~~~~~~~~~~ 105 (744)
-+.+++..+..+.+ +| +.+.|.+ .+.....++. ....+.++...|.++.++.|+.|.+.+ .+.-. ...
T Consensus 29 ~~~~~~~~~~~~~l~~g-----~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~r~~l~~~~~~~~~~~~-~p~v~-~~~ 100 (693)
T KOG0730|consen 29 VVVLSEGAMDKLGLLRG-----VLLDGKKRREPVDAVVQDET-SELIGRQTMVSRSNLRLQLGRLLHSSD-CPSVK-RPA 100 (693)
T ss_pred hheecHHHHhhhcCCcc-----eEEECccccCCccceeccCC-ccccchhhheeccchhhcccceecccC-CCCcc-ccc
Confidence 78888988887776 34 4443432 3333333344 778889999999999999999999998 43311 111
Q ss_pred eEEE-EeeeeecCCcccccCHHHHHHH----HHHHhcCCccccCcEEEEEEcCeEEEEEEEEeeecCcccccccccceec
Q 004584 106 LLTV-ELEFVKKGSKNEQVDAVLLANQ----LRKRFINQVMTAGQRVVFEYHGNNYIFTVNGAAVEGQEKSNALERGIIT 180 (744)
Q Consensus 106 ~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 180 (744)
.+.+ .++.... .+..+.+... +...+.+ ++.|+.+ .......|++.+..+ .. +++
T Consensus 101 ~i~~l~~~~~~~-----~i~~~~~d~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~--------~~--~v~ 160 (693)
T KOG0730|consen 101 RIAVLPVDDTSE-----GIAGELFDVLERPFLLEALRP--LVKGDTF---AGLNPAEFKVLELDP--------SP--QVT 160 (693)
T ss_pred eeeeeehhhccc-----cchhhhhhhhhhhhhhhhhCc--cccccch---hhhhhhhhhcccccc--------ch--hcC
Confidence 1222 2222222 2222333222 2223332 6666654 122234555655544 11 667
Q ss_pred CCcEEEEEecCCCceeeeccccCccccccccCCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEE
Q 004584 181 NETYFVFEASNDSGIKIVNQREGANSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLY 260 (744)
Q Consensus 181 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~ 260 (744)
++|.+.+....... .. .. .+.+. ++ +||+..++..+ ++++++++.+|..+...|+++|+|+|+|
T Consensus 161 ~~t~~~~~~~~~~~---~~-----~~----~~~~~-~~--~gg~~~~~~~i-~e~v~~pl~~~~~~~s~g~~~prg~Ll~ 224 (693)
T KOG0730|consen 161 PDTELSYLGEPAKR---EE-----EE----LPEVG-DD--IGGLKRQLSVI-RELVELPLRHPALFKSIGIKPPRGLLLY 224 (693)
T ss_pred ccchhhhcCCCccc---cc-----cc----ccccc-cc--cchhHHHHHHH-HHHHHhhhcchhhhhhcCCCCCCCcccc
Confidence 77777765432211 10 00 13444 44 99999999999 9999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHhcCCCcEEecccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCC
Q 004584 261 GPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGS 340 (744)
Q Consensus 261 GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~ 340 (744)
||||||||.+++++|++.+ .+++.+++++++++|.|++++++|+.|+.|...+ .|++|||||+|+++|++..
T Consensus 225 gppg~Gkt~l~~aVa~e~~-a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~-------~psii~IdEld~l~p~r~~ 296 (693)
T KOG0730|consen 225 GPPGTGKTFLVRAVANEYG-AFLFLINGPELISKFPGETESNLRKAFAEALKFQ-------VPSIIFIDELDALCPKREG 296 (693)
T ss_pred CCCCCChHHHHHHHHHHhC-ceeEecccHHHHHhcccchHHHHHHHHHHHhccC-------CCeeEeHHhHhhhCCcccc
Confidence 9999999999999999984 6678899999999999999999999999999886 2679999999999999977
Q ss_pred CCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCC
Q 004584 341 TRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSF 420 (744)
Q Consensus 341 ~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~ 420 (744)
..+ +.++++.||++.||+..+..+++||++||+|+.|||+++| |||++.++|..|+..+|.+|++.++++|+
T Consensus 297 ~~~---~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~---- 368 (693)
T KOG0730|consen 297 ADD---VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMN---- 368 (693)
T ss_pred cch---HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcC----
Confidence 543 6889999999999999999999999999999999999999 99999999999999999999999999998
Q ss_pred CCCcccHHHHHHhcCCCChHHHHHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHHhhhccCCcc----cccc
Q 004584 421 LAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPAFGA----STDD 496 (744)
Q Consensus 421 ~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~Ps~~~----~~~~ 496 (744)
..+++++..+|..++||+|+||.++|++|...+.+| ++++|+.|+..++|++.+ +.++
T Consensus 369 ~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~------------------~~~~~~~A~~~i~psa~Re~~ve~p~ 430 (693)
T KOG0730|consen 369 LLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR------------------TLEIFQEALMGIRPSALREILVEMPN 430 (693)
T ss_pred CcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh------------------hHHHHHHHHhcCCchhhhheeccCCC
Confidence 557899999999999999999999999999999875 789999999999998765 4567
Q ss_pred cccccccceeecCcchhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccch
Q 004584 497 LERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHE 576 (744)
Q Consensus 497 l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~ 576 (744)
+.|..++|+.+++..+++.+.|+.++.+.+.+.+.+|+++||||||||||||++||++|++++.+|+++++|+.+ .+|.
T Consensus 431 v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~-sk~v 509 (693)
T KOG0730|consen 431 VSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELF-SKYV 509 (693)
T ss_pred CChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHH-HHhc
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999954 4566
Q ss_pred hhHhhHHHHHHHHHhcCCCeEEEEeccchhhccCC-CCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCcccc
Q 004584 577 STKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVP-IGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGI 655 (744)
Q Consensus 577 ~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~~-~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l 655 (744)
++.+..++++|++|++.+||||||||||++...|+ .+...+++++++||++|+++. ..++|+|||+||+|+.+|++.+
T Consensus 510 GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e-~~k~V~ViAATNRpd~ID~ALl 588 (693)
T KOG0730|consen 510 GESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE-ALKNVLVIAATNRPDMIDPALL 588 (693)
T ss_pred CchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccc-ccCcEEEEeccCChhhcCHHHc
Confidence 66667999999999999999999999999998884 233568999999999999984 4579999999999999999988
Q ss_pred c-cccceEEEcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcc
Q 004584 656 C-DAFSVTYHVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIK 730 (744)
Q Consensus 656 ~-~rf~~~i~~p~~~~~~~~~Il~~~----~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It 730 (744)
+ +|||+.|+||+|+.+.+.+||+.. ..-.+-|+.++.+...+.+.+++..+++.|+..|-.+..+ -..|+
T Consensus 589 RPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~-----a~~i~ 663 (693)
T KOG0730|consen 589 RPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE-----ATEIT 663 (693)
T ss_pred CCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc-----ccccc
Confidence 8 999999999999999999999973 2223347888888888999999999999999887543222 46699
Q ss_pred hhhHHHHHHHH
Q 004584 731 ISHFYDCLQDM 741 (744)
Q Consensus 731 ~e~~~~al~~~ 741 (744)
.+||.+|+..+
T Consensus 664 ~~hf~~al~~~ 674 (693)
T KOG0730|consen 664 WQHFEEALKAV 674 (693)
T ss_pred HHHHHHHHHhh
Confidence 99999999854
No 4
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=8e-73 Score=665.57 Aligned_cols=675 Identities=25% Similarity=0.375 Sum_probs=536.1
Q ss_pred eEEEeecCCcccccccEEEeChhhhcccCC-CCCCceEEEEe-CC-cEEEEEee--CCCCCCCcEeecHHHHhccCccCC
Q 004584 14 TMNVINTPSADLALTNLAYCSPADLLNFRV-PNSNLFLASVA-GD-SFVLSLAS--HPSVNKGQIALNSVQRRHAKVSTG 88 (744)
Q Consensus 14 ~l~v~~~p~~~~a~tn~v~vs~~~~~~l~~-~g~~~~~v~i~-~~-~~v~~~~~--~~~~~~~~i~~~~~~r~~~~~~~~ 88 (744)
.++|.... ...+..+.++++|+.|..|++ +| ++|.+. |+ +.+..+++ .++.+++.|+||+.+|.|+|+++|
T Consensus 3 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (733)
T TIGR01243 3 ELRVAEAY-PRDVGRGIVRIDRQTAARLGVEPG---DFVEIEKGDRSVVAIVWPLRPDDEGRGIIRMDGYLRANAGVTIG 78 (733)
T ss_pred EEEehhhh-ccCCCCCeEeeCHHHHHhcCCCCC---CEEEEecCCCceeEEEEecCccccCCCEEeecHHHHhhcCCCCC
Confidence 46777764 344579999999999999998 46 677876 43 35555554 356788999999999999999999
Q ss_pred CeEEEEEeCCCCcceeEeEEEEeeeeecCCcccccCHHHHHHHHHHHhcCCccccCcEEEEEEcCeEEEEEEEEeeecCc
Q 004584 89 DHVSLNRFIPPEDFNLALLTVELEFVKKGSKNEQVDAVLLANQLRKRFINQVMTAGQRVVFEYHGNNYIFTVNGAAVEGQ 168 (744)
Q Consensus 89 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~ 168 (744)
|.|+|+++..+. +..+.+.- .. . ......+..+++..+.++++..|+.+.+.+.+..+.|+|.++.|
T Consensus 79 ~~~~~~~~~~~~---~~~~~~~~--~~----~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~p--- 145 (733)
T TIGR01243 79 DTVTVERAEVKE---AKKVVLAP--TQ----P-IRFGRDFVDYVKEFLLGKPISKGETVIVPVLEGALPFVVVSTQP--- 145 (733)
T ss_pred CeEEEeecCCCc---cceEeecc--cc----c-cccccchHHHHHHHHcCCCCCCCCEEEecccCcceeEEEEecCC---
Confidence 999999987432 22233321 00 0 01123455678888999999999999988887778899988877
Q ss_pred ccccccccceecCCcEEEEEecCCCceeeeccccCccccccccCCccccccCcCchHHHHHHHHHHHHhccCCChhHHhH
Q 004584 169 EKSNALERGIITNETYFVFEASNDSGIKIVNQREGANSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSK 248 (744)
Q Consensus 169 ~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~ 248 (744)
...+.++..|.+.+........ .. ...++++|++ |||++++++++ ++++..++.+|+++++
T Consensus 146 -----~~~~~~~~~t~~~~~~~~~~~~---------~~--~~~~~~~~~d--i~G~~~~~~~l-~~~i~~~~~~~~~~~~ 206 (733)
T TIGR01243 146 -----AGFVYVTEATEVEIREKPVREE---------IE--RKVPKVTYED--IGGLKEAKEKI-REMVELPMKHPELFEH 206 (733)
T ss_pred -----CCcEEECCCceEEecCCccccc---------cc--cCCCCCCHHH--hcCHHHHHHHH-HHHHHHHhhCHHHHHh
Confidence 3456778888887654322110 00 0126789999 99999999999 9999999999999999
Q ss_pred hCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEE
Q 004584 249 LGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIF 328 (744)
Q Consensus 249 ~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~i 328 (744)
+|+.+++|+|||||||||||++++++|++++ .+++.++++++.++|.|+++..++.+|+.+.... |+||||
T Consensus 207 ~gi~~~~giLL~GppGtGKT~laraia~~~~-~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~--------p~il~i 277 (733)
T TIGR01243 207 LGIEPPKGVLLYGPPGTGKTLLAKAVANEAG-AYFISINGPEIMSKYYGESEERLREIFKEAEENA--------PSIIFI 277 (733)
T ss_pred cCCCCCceEEEECCCCCChHHHHHHHHHHhC-CeEEEEecHHHhcccccHHHHHHHHHHHHHHhcC--------CcEEEe
Confidence 9999999999999999999999999999984 6678899999999999999999999999998764 679999
Q ss_pred cCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHH
Q 004584 329 DEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQIL 408 (744)
Q Consensus 329 DEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il 408 (744)
||+|.++++++...+ +...+++++|+..|+++...+.++||++||+++.+|++++|+|||+..++++.|+.++|.+||
T Consensus 278 DEid~l~~~r~~~~~--~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il 355 (733)
T TIGR01243 278 DEIDAIAPKREEVTG--EVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEIL 355 (733)
T ss_pred ehhhhhcccccCCcc--hHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHH
Confidence 999999988765432 456789999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHHHHHHHhccccCCCC--C-C---CccccceeehhHHHHH
Q 004584 409 QIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLT--K-P---VDEESIKVTMDDFLHA 482 (744)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~--~-~---~~~~~~~it~~df~~a 482 (744)
+.+++.+. +..+.+++.+++.++||+++|+..+|+.|.+.+++|........ . . .......++.+||..|
T Consensus 356 ~~~~~~~~----l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~A 431 (733)
T TIGR01243 356 KVHTRNMP----LAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEA 431 (733)
T ss_pred HHHhcCCC----CccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHH
Confidence 99988776 56788999999999999999999999999999998875422111 0 0 1124467899999999
Q ss_pred HhhhccCCccc----ccccccccccceeecCcchhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhc
Q 004584 483 LYEIVPAFGAS----TDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS 558 (744)
Q Consensus 483 l~~~~Ps~~~~----~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~ 558 (744)
+..++|++... .+.+.|..+.|+...+..+.+.+.+...+.+.+...+..++.++|||||||||||++|+++|+++
T Consensus 432 l~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~ 511 (733)
T TIGR01243 432 LKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES 511 (733)
T ss_pred HhhccccccchhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 99999986442 23455666666666666666666666677777778888899999999999999999999999999
Q ss_pred CCCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhhccCCCC--cchhHHHHHHHHHHhccCCCCCC
Q 004584 559 DFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIG--PRFSNIISQTMLVLLKRLPPKGK 636 (744)
Q Consensus 559 ~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~~~g--~~~~~~~~~~Ll~~l~~~~~~~~ 636 (744)
+.+|+.+.+++ +.+.+.++.++.++++|+.|+...|+||||||||+|++.++.+ ....+.+.+.|+..|+++.. ..
T Consensus 512 ~~~fi~v~~~~-l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~-~~ 589 (733)
T TIGR01243 512 GANFIAVRGPE-ILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQE-LS 589 (733)
T ss_pred CCCEEEEehHH-HhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccC-CC
Confidence 99999998877 4445555666789999999999999999999999998776432 23456788888899988743 45
Q ss_pred cEEEEEeCCCCCCCCccccc-cccceEEEcCCCCHHHHHHHHHHcc----CCCHHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 004584 637 KLLVIGTTSEVSFLDSVGIC-DAFSVTYHVPTLKTDDAKKVLKQLN----VFAEEDVDSASEALNDMPIKKLYMLIEMAA 711 (744)
Q Consensus 637 ~v~vi~~tn~~~~l~~~~l~-~rf~~~i~~p~~~~~~~~~Il~~~~----~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~ 711 (744)
+++||||||+++.+|++.++ +||+..++||+|+.+++.+||+... ...+.++..++....+.+...+.++++.|+
T Consensus 590 ~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~ 669 (733)
T TIGR01243 590 NVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAA 669 (733)
T ss_pred CEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 89999999999999999888 8999999999999999999998631 223345666666666777777777777776
Q ss_pred hcccCCccc-----cc------ccCCCCcchhhHHHHHHHH
Q 004584 712 QGEQGGAAE-----AI------YSGREKIKISHFYDCLQDM 741 (744)
Q Consensus 712 ~~a~~~~~~-----a~------~~g~~~It~e~~~~al~~~ 741 (744)
..+-.+... .. ......|+.+||.+|+..+
T Consensus 670 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~ 710 (733)
T TIGR01243 670 MAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKV 710 (733)
T ss_pred HHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHc
Confidence 544221100 00 0113469999999999865
No 5
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-59 Score=470.86 Aligned_cols=286 Identities=36% Similarity=0.594 Sum_probs=257.3
Q ss_pred cccceecCCcEEEEEecCCCceeeeccccCcc---ccccccCCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhC
Q 004584 174 LERGIITNETYFVFEASNDSGIKIVNQREGAN---SNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLG 250 (744)
Q Consensus 174 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g 250 (744)
.+...+.+..+|.+.....+.+.+.+.+..+. ..+.+.|+++|++ ||||++|+++| ++++++|+.+|++|+++|
T Consensus 105 vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~d--IGGL~~Qi~Ei-rE~VELPL~~PElF~~~G 181 (406)
T COG1222 105 VDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYED--IGGLDEQIQEI-REVVELPLKNPELFEELG 181 (406)
T ss_pred cCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhh--ccCHHHHHHHH-HHHhcccccCHHHHHHcC
Confidence 45667888889988888777777776653322 2334569999999 99999999999 999999999999999999
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcC
Q 004584 251 IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDE 330 (744)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDE 330 (744)
+.||+|||||||||||||++|||+|+..+ ..|+.+.+++++.||.|+..+.+|++|+.|+.+. ||||||||
T Consensus 182 I~PPKGVLLYGPPGTGKTLLAkAVA~~T~-AtFIrvvgSElVqKYiGEGaRlVRelF~lAreka--------PsIIFiDE 252 (406)
T COG1222 182 IDPPKGVLLYGPPGTGKTLLAKAVANQTD-ATFIRVVGSELVQKYIGEGARLVRELFELAREKA--------PSIIFIDE 252 (406)
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccC-ceEEEeccHHHHHHHhccchHHHHHHHHHHhhcC--------CeEEEEec
Confidence 99999999999999999999999999986 4566788999999999999999999999999885 78999999
Q ss_pred cchhcccCCCCCC-CCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHH
Q 004584 331 IDAICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQ 409 (744)
Q Consensus 331 id~l~~~~~~~~~-~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~ 409 (744)
||++..+|.+... +....++.+-+||++|||++++++|-||+|||+++.|||||+||||||+.|+||+||.++|.+||+
T Consensus 253 IDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~ 332 (406)
T COG1222 253 IDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILK 332 (406)
T ss_pred hhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHH
Confidence 9999999866533 334567788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHHhhhcc
Q 004584 410 IHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVP 488 (744)
Q Consensus 410 ~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~P 488 (744)
+|+++|. +.+++|++.||+.++|+|||||.++|.+|.++|++.. ...+|++||..|.+++..
T Consensus 333 IHtrkM~----l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~-------------R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 333 IHTRKMN----LADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER-------------RDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred HHhhhcc----CccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc-------------cCeecHHHHHHHHHHHHh
Confidence 9999999 8899999999999999999999999999999999853 457999999999998743
No 6
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-57 Score=489.50 Aligned_cols=576 Identities=21% Similarity=0.263 Sum_probs=412.5
Q ss_pred HHHHHHHHhc-CCccccCcEEEEEEcCe------------------EEEEEEEEeeecCcccccccccceecCCcEEEEE
Q 004584 128 LANQLRKRFI-NQVMTAGQRVVFEYHGN------------------NYIFTVNGAAVEGQEKSNALERGIITNETYFVFE 188 (744)
Q Consensus 128 ~~~~~~~~~~-~~~~~~g~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 188 (744)
+...++.+|. .++++.|+.|++.++.. .+.|+|.+++|.. ....-+-+..|.++..
T Consensus 306 ~~~~l~~~f~t~ril~~gdvf~i~~~~~~~~~~~~~~l~l~~~~d~~v~~~v~~~ep~~-----~~~~~i~~~~T~lv~~ 380 (953)
T KOG0736|consen 306 IDVVLKKHFKTPRILQSGDVFCIPINSQMANLNGYPELPLWRETDFLVYKKVIEAEPGN-----ESAYIIDTNHTSLVLV 380 (953)
T ss_pred HHHHHHHHhCcceeeecCCEEEEeehhhhcccccchhhHhhhhccceeEEEEeecCCCc-----cceEEEcCCCceEEEc
Confidence 3333444443 47899999999986543 3567888877611 1112233445676665
Q ss_pred ecCCCceeeeccccCccccccccCCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHH
Q 004584 189 ASNDSGIKIVNQREGANSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKT 268 (744)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT 268 (744)
....+.+...+.+. . .-.+|-. .-+.+..+.++ . .+-.|-..|. ..++.-...+||+|+||||||
T Consensus 381 ~~~ss~~~~lps~~----~----~l~n~~~--~~~~~~~~~~l-~-~vl~p~~~~s---~~~~~~~~~vLLhG~~g~GK~ 445 (953)
T KOG0736|consen 381 GATSSRVPLLPSSL----S----TLWNSLS--PPGLEAKVLEL-V-AVLSPQKQPS---GALLTLNPSVLLHGPPGSGKT 445 (953)
T ss_pred cccccCCcCCChhh----H----HHhccCC--CccchHHHHHH-H-HHhCcccCcc---hhccccceEEEEeCCCCCChH
Confidence 54444322222111 1 1112222 55666666644 3 3334444442 233344557999999999999
Q ss_pred HHHHHHHHHhcCCCcEEecccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccH
Q 004584 269 LMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVH 348 (744)
Q Consensus 269 ~lar~la~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~ 348 (744)
++++++|+++ +.+++.++|.++.....+.++.++...|..|+... |+|||+-++|.+..+.+...+ --.
T Consensus 446 t~V~~vas~l-g~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~--------pavifl~~~dvl~id~dgged--~rl 514 (953)
T KOG0736|consen 446 TVVRAVASEL-GLHLLEVDCYELVAESASHTETKLQAIFSRARRCS--------PAVLFLRNLDVLGIDQDGGED--ARL 514 (953)
T ss_pred HHHHHHHHHh-CCceEeccHHHHhhcccchhHHHHHHHHHHHhhcC--------ceEEEEeccceeeecCCCchh--HHH
Confidence 9999999999 68889999999999999999999999999999875 679999999999854433111 112
Q ss_pred HHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHH
Q 004584 349 DSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQ 428 (744)
Q Consensus 349 ~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~ 428 (744)
...+..++..=+...+...++||++|++.+.+++.+++ .|.++|.++.|++++|.+||+.++.... +..++.+.
T Consensus 515 ~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~----~n~~v~~k 588 (953)
T KOG0736|consen 515 LKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLP----LNQDVNLK 588 (953)
T ss_pred HHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccc----cchHHHHH
Confidence 23344444421233356789999999999999999999 7888899999999999999999998776 67889999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHhccccC-------CCCCCCccccceeehhHHHHHHhhhccCCcc-----cccc
Q 004584 429 ELAARTKNYSGAELEGVAKSAVSFALNRQLSMD-------DLTKPVDEESIKVTMDDFLHALYEIVPAFGA-----STDD 496 (744)
Q Consensus 429 ~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~-------~~~~~~~~~~~~it~~df~~al~~~~Ps~~~-----~~~~ 496 (744)
.++.++.||+.+++++++..+...+..|..... .-..........++++||.+++.+.+..+.. ..+.
T Consensus 589 ~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPn 668 (953)
T KOG0736|consen 589 QLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPN 668 (953)
T ss_pred HHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCc
Confidence 999999999999999999887444433322211 0011223445789999999999977655432 3577
Q ss_pred cccccccceeecCcchhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccch
Q 004584 497 LERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHE 576 (744)
Q Consensus 497 l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~ 576 (744)
+.|.+++|+.+.+..+.+.++.+.++.+.+.. +..+..++|||||||||||.+|||+|.++..+|++|++|++ +.+|.
T Consensus 669 V~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPEL-LNMYV 746 (953)
T KOG0736|consen 669 VSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL-LNMYV 746 (953)
T ss_pred cchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHH-HHHHh
Confidence 88888888888887777777777777766543 45556899999999999999999999999999999999994 55677
Q ss_pred hhHhhHHHHHHHHHhcCCCeEEEEeccchhhccCCC-C--cchhHHHHHHHHHHhccCCC-CCCcEEEEEeCCCCCCCCc
Q 004584 577 STKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPI-G--PRFSNIISQTMLVLLKRLPP-KGKKLLVIGTTSEVSFLDS 652 (744)
Q Consensus 577 ~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~~~-g--~~~~~~~~~~Ll~~l~~~~~-~~~~v~vi~~tn~~~~l~~ 652 (744)
+++++++|++|++|+.+.||||||||+|+|++.|+. | +.+.+++...||.+|+++.. ....|+||||||+||+||+
T Consensus 747 GqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDp 826 (953)
T KOG0736|consen 747 GQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDP 826 (953)
T ss_pred cchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccCh
Confidence 777789999999999999999999999999998853 2 35678999999999999975 5678999999999999999
Q ss_pred cccc-cccceEEEcCCCC-HHHHHHHHHHc----cCCCHHHHHHHHHhCC-CCcHHHHHHHHHHHHhcccCCccc-----
Q 004584 653 VGIC-DAFSVTYHVPTLK-TDDAKKVLKQL----NVFAEEDVDSASEALN-DMPIKKLYMLIEMAAQGEQGGAAE----- 720 (744)
Q Consensus 653 ~~l~-~rf~~~i~~p~~~-~~~~~~Il~~~----~~~~~~~~~~~~~~~~-~g~ir~l~~~l~~a~~~a~~~~~~----- 720 (744)
+.+| ||||+.+++.+.+ .+...+||+.. ..-.+-++.+++.... ..+...+..++.-|...|-.+...
T Consensus 827 ALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g 906 (953)
T KOG0736|consen 827 ALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESG 906 (953)
T ss_pred hhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9988 9999999998887 66677777762 1122223344433332 333344444443332222111111
Q ss_pred -----ccccCCCCcchhhHHHHHHHHh
Q 004584 721 -----AIYSGREKIKISHFYDCLQDMV 742 (744)
Q Consensus 721 -----a~~~g~~~It~e~~~~al~~~~ 742 (744)
...+..-+|++|||.++++++.
T Consensus 907 ~~~~~e~~~~~v~V~~eDflks~~~l~ 933 (953)
T KOG0736|consen 907 TISEEEQESSSVRVTMEDFLKSAKRLQ 933 (953)
T ss_pred cccccccCCceEEEEHHHHHHHHHhcC
Confidence 1123345799999999998654
No 7
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-50 Score=458.12 Aligned_cols=471 Identities=33% Similarity=0.467 Sum_probs=411.1
Q ss_pred ccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhcccccchHHHHHHHHHHHHhccccc
Q 004584 238 SRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTR 317 (744)
Q Consensus 238 ~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~ 317 (744)
.++.+++.++.+++.++++++++||||||||+++++++.. ...+ ..+++++..++|.|+++.+++.+|..+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--- 76 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEF-LSINGPEILSKYVGESELRLRELFEEAEKLA--- 76 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcc-cccCcchhhhhhhhHHHHHHHHHHHHHHHhC---
Confidence 4677899999999999999999999999999999999999 5555 8899999999999999999999999999886
Q ss_pred CCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEc
Q 004584 318 GDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEIS 397 (744)
Q Consensus 318 ~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~ 397 (744)
|+++++||+|.+++.+.. ....+.+.++.+++..|+++. ...+.+++.+|++..+++++++++||+.++.+.
T Consensus 77 -----~~ii~~d~~~~~~~~~~~--~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 148 (494)
T COG0464 77 -----PSIIFIDEIDALAPKRSS--DQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVN 148 (494)
T ss_pred -----CCeEeechhhhcccCccc--cccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecC
Confidence 469999999999999887 334678899999999999999 555999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHHHHHHHhccccCCCCCCCccccceeehh
Q 004584 398 LPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMD 477 (744)
Q Consensus 398 ~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~ 477 (744)
.|+...+.+|++.+...+. ...+.+...++..+.||+++++..+|+.+...+..|.. ........++.+
T Consensus 149 ~~~~~~~~ei~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~-------~~~~~~~~~~~~ 217 (494)
T COG0464 149 LPDEAGRLEILQIHTRLMF----LGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI-------DLVGEYIGVTED 217 (494)
T ss_pred CCCHHHHHHHHHHHHhcCC----CcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh-------ccCcccccccHH
Confidence 9999999999999998887 45578999999999999999999999999999998863 122445678999
Q ss_pred HHHHHHhhhccC--CcccccccccccccceeecCcchhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHH
Q 004584 478 DFLHALYEIVPA--FGASTDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAG 555 (744)
Q Consensus 478 df~~al~~~~Ps--~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a 555 (744)
||..+++.+.|+ .....+.+.|...+|+...+..+.+.+.++..+.+.+...+..++.++|||||||||||++|+++|
T Consensus 218 ~~~~~l~~~~~~~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava 297 (494)
T COG0464 218 DFEEALKKVLPSRGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVA 297 (494)
T ss_pred HHHHHHHhcCcccccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHH
Confidence 999999999885 444566788888888888888888888888888888777788899999999999999999999999
Q ss_pred hhcCCCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhhccCCCCcchh-HHHHHHHHHHhccCCCC
Q 004584 556 IDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFS-NIISQTMLVLLKRLPPK 634 (744)
Q Consensus 556 ~~~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~~~g~~~~-~~~~~~Ll~~l~~~~~~ 634 (744)
++++.+|+.++.+ .+.+.+.++++++++++|..|++..||||||||+|+++..++.+...+ .++.+.|+..++++..
T Consensus 298 ~~~~~~fi~v~~~-~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~- 375 (494)
T COG0464 298 LESRSRFISVKGS-ELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEK- 375 (494)
T ss_pred hhCCCeEEEeeCH-HHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCc-
Confidence 9999999999999 688899999999999999999999999999999999999887655544 5899999999998843
Q ss_pred CCcEEEEEeCCCCCCCCccccc-cccceEEEcCCCCHHHHHHHHHHccC------CCHHHHHHHHHhCCCCcHHHHHHHH
Q 004584 635 GKKLLVIGTTSEVSFLDSVGIC-DAFSVTYHVPTLKTDDAKKVLKQLNV------FAEEDVDSASEALNDMPIKKLYMLI 707 (744)
Q Consensus 635 ~~~v~vi~~tn~~~~l~~~~l~-~rf~~~i~~p~~~~~~~~~Il~~~~~------~~~~~~~~~~~~~~~g~ir~l~~~l 707 (744)
...|+||+|||+++.+|++.++ +||+..++||+|+.+++.+|++..-. ..+.++..+.....+.....+..++
T Consensus 376 ~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~ 455 (494)
T COG0464 376 AEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALV 455 (494)
T ss_pred cCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHH
Confidence 4579999999999999998777 89999999999999999999997421 2244555555555577888888888
Q ss_pred HHHHhcccCCcccccccC-CCCcchhhHHHHHHHH
Q 004584 708 EMAAQGEQGGAAEAIYSG-REKIKISHFYDCLQDM 741 (744)
Q Consensus 708 ~~a~~~a~~~~~~a~~~g-~~~It~e~~~~al~~~ 741 (744)
+.|...+..+ . ...||.+||.+|+..+
T Consensus 456 ~ea~~~~~~~-------~~~~~~~~~~~~~a~~~~ 483 (494)
T COG0464 456 REAALEALRE-------ARRREVTLDDFLDALKKI 483 (494)
T ss_pred HHHHHHHHHH-------hccCCccHHHHHHHHHhc
Confidence 8888775432 2 5579999999999864
No 8
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-50 Score=432.12 Aligned_cols=429 Identities=16% Similarity=0.237 Sum_probs=347.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhcCC---CcEEecccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEc
Q 004584 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGM---EPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFD 329 (744)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~la~~l~~~---~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iD 329 (744)
.+.+|||+||+|||||.|++++++++... ++.+++|+.+-.+.+....+.++.+|.++..++ |+||++|
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~--------PSiIvLD 501 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYA--------PSIIVLD 501 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhC--------CcEEEEc
Confidence 45689999999999999999999998532 456789998887777777788999999999986 5699999
Q ss_pred CcchhcccCCCCCCCCccHHHHHHHHHHhc-cC-ccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHH
Q 004584 330 EIDAICKSRGSTRDGTGVHDSIVNQLLTKI-DG-VESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQI 407 (744)
Q Consensus 330 Eid~l~~~~~~~~~~~~~~~~~~~~LL~~~-d~-~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~I 407 (744)
++|.|+...+...+..++....+..+++++ +- ...+..+.|||+.+....++|.|.+|++|..++.++.|+..+|.+|
T Consensus 502 dld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~I 581 (952)
T KOG0735|consen 502 DLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEI 581 (952)
T ss_pred chhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHH
Confidence 999998733332222344445555555443 22 2344457999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHHhhhc
Q 004584 408 LQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIV 487 (744)
Q Consensus 408 l~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ 487 (744)
|+..+++... .....|++-++..|+||...|+..++++|...|+...+. .... .+|.++|.++++.+.
T Consensus 582 L~~~~s~~~~---~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris--------~~~k-lltke~f~ksL~~F~ 649 (952)
T KOG0735|consen 582 LTTIFSKNLS---DITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERIS--------NGPK-LLTKELFEKSLKDFV 649 (952)
T ss_pred HHHHHHhhhh---hhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhc--------cCcc-cchHHHHHHHHHhcC
Confidence 9988876431 123345666999999999999999999999999833221 1222 689999999999999
Q ss_pred cCCcccc-----cccccccccceeecCcchhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCE
Q 004584 488 PAFGAST-----DDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPF 562 (744)
Q Consensus 488 Ps~~~~~-----~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~ 562 (744)
|.+.+.. ..+.|..++|+.+.++.++++++|+.++..-+...+.....++|||||||||||.+|.++|..++++|
T Consensus 650 P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~f 729 (952)
T KOG0735|consen 650 PLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRF 729 (952)
T ss_pred hHHhhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeE
Confidence 9876543 34677777788888888888999999999999999999999999999999999999999999999999
Q ss_pred EEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhhccCCC-CcchhHHHHHHHHHHhccCCCCCCcEEEE
Q 004584 563 VKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPI-GPRFSNIISQTMLVLLKRLPPKGKKLLVI 641 (744)
Q Consensus 563 i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~~~-g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi 641 (744)
|++++|+.+ .+|.+.+++++|++|.+|+...|||+||||+|+++++|+- ..++.+++.+.|++.|++.+ ....|.|+
T Consensus 730 isvKGPElL-~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~E-gl~GV~i~ 807 (952)
T KOG0735|consen 730 ISVKGPELL-SKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAE-GLDGVYIL 807 (952)
T ss_pred EEecCHHHH-HHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccc-ccceEEEE
Confidence 999999954 4566666779999999999999999999999999998853 34678999999999999984 36789999
Q ss_pred EeCCCCCCCCccccc-cccceEEEcCCCCHHHHHHHHHHcc----CCCHHHHHHHHHhCCCCcHHHH
Q 004584 642 GTTSEVSFLDSVGIC-DAFSVTYHVPTLKTDDAKKVLKQLN----VFAEEDVDSASEALNDMPIKKL 703 (744)
Q Consensus 642 ~~tn~~~~l~~~~l~-~rf~~~i~~p~~~~~~~~~Il~~~~----~~~~~~~~~~~~~~~~g~ir~l 703 (744)
|+|++|+++|++.+| ||+|+.++.|.|+..++.+|++.+. .-.+.|+..+.....+.+...+
T Consensus 808 aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADl 874 (952)
T KOG0735|consen 808 AATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADL 874 (952)
T ss_pred EecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhH
Confidence 999999999999888 9999999999999999999999742 2334445555554443333333
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-51 Score=440.92 Aligned_cols=254 Identities=42% Similarity=0.701 Sum_probs=238.9
Q ss_pred cccCCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecc
Q 004584 209 FRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNG 288 (744)
Q Consensus 209 ~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~ 288 (744)
.+.|+++|+| |||+++.+++| ++++..|+.+|+.|.++|+.+|||||||||||||||++||++|++. +.+|+.+.+
T Consensus 426 ve~p~v~W~d--IGGlE~lK~el-q~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~-~~nFlsvkg 501 (693)
T KOG0730|consen 426 VEMPNVSWDD--IGGLEELKREL-QQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA-GMNFLSVKG 501 (693)
T ss_pred ccCCCCChhh--ccCHHHHHHHH-HHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh-cCCeeeccC
Confidence 4558999999 99999999999 9999999999999999999999999999999999999999999997 577889999
Q ss_pred cchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcE
Q 004584 289 PEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNV 368 (744)
Q Consensus 289 ~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v 368 (744)
++++++|+|++|+.++++|+.|+... |||||+||||+++.+|++.. .++.++++++||++|||+....+|
T Consensus 502 pEL~sk~vGeSEr~ir~iF~kAR~~a--------P~IiFfDEiDsi~~~R~g~~--~~v~~RVlsqLLtEmDG~e~~k~V 571 (693)
T KOG0730|consen 502 PELFSKYVGESERAIREVFRKARQVA--------PCIIFFDEIDALAGSRGGSS--SGVTDRVLSQLLTEMDGLEALKNV 571 (693)
T ss_pred HHHHHHhcCchHHHHHHHHHHHhhcC--------CeEEehhhHHhHhhccCCCc--cchHHHHHHHHHHHcccccccCcE
Confidence 99999999999999999999999875 78999999999999998443 388999999999999999999999
Q ss_pred EEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHH
Q 004584 369 LLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKS 448 (744)
Q Consensus 369 ~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~ 448 (744)
+|||+||||+.||+|++||||||+.|++|+||.+.|++||+.++++|+ +.+++|+++||+.|+|||||||..+|++
T Consensus 572 ~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp----~~~~vdl~~La~~T~g~SGAel~~lCq~ 647 (693)
T KOG0730|consen 572 LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMP----FSEDVDLEELAQATEGYSGAEIVAVCQE 647 (693)
T ss_pred EEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCC----CCccccHHHHHHHhccCChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 7889999999999999999999999999
Q ss_pred HHHHHHHhccccCCCCCCCccccceeehhHHHHHHhhhccCCc
Q 004584 449 AVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPAFG 491 (744)
Q Consensus 449 A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~Ps~~ 491 (744)
|+..|+++.+. ...|+.+||++|++..+|+..
T Consensus 648 A~~~a~~e~i~-----------a~~i~~~hf~~al~~~r~s~~ 679 (693)
T KOG0730|consen 648 AALLALRESIE-----------ATEITWQHFEEALKAVRPSLT 679 (693)
T ss_pred HHHHHHHHhcc-----------cccccHHHHHHHHHhhcccCC
Confidence 99999987643 457899999999999988753
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-50 Score=426.61 Aligned_cols=266 Identities=36% Similarity=0.584 Sum_probs=240.8
Q ss_pred ccCCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEeccc
Q 004584 210 RHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGP 289 (744)
Q Consensus 210 ~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~ 289 (744)
..|+++|+| ||||++...++ ..++..|+++|+.|+.+|+..|.|||||||||||||++|+|+|++. +.+|+.|.|+
T Consensus 504 tVPdVtW~d--IGaL~~vR~eL-~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa-g~NFisVKGP 579 (802)
T KOG0733|consen 504 TVPDVTWDD--IGALEEVRLEL-NMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA-GANFISVKGP 579 (802)
T ss_pred ecCCCChhh--cccHHHHHHHH-HHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc-cCceEeecCH
Confidence 358999999 99999999988 9999999999999999999999999999999999999999999997 6788999999
Q ss_pred chhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEE
Q 004584 290 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVL 369 (744)
Q Consensus 290 ~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~ 369 (744)
+++++|+|++|+.+|++|..|+..+ ||||||||+|+|+|+|+... +++..++++|||++|||+..+.+|+
T Consensus 580 ELlNkYVGESErAVR~vFqRAR~sa--------PCVIFFDEiDaL~p~R~~~~--s~~s~RvvNqLLtElDGl~~R~gV~ 649 (802)
T KOG0733|consen 580 ELLNKYVGESERAVRQVFQRARASA--------PCVIFFDEIDALVPRRSDEG--SSVSSRVVNQLLTELDGLEERRGVY 649 (802)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhcCC--------CeEEEecchhhcCcccCCCC--chhHHHHHHHHHHHhcccccccceE
Confidence 9999999999999999999999864 89999999999999998764 4778999999999999999999999
Q ss_pred EEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcC--CCChHHHHHHHH
Q 004584 370 LIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK--NYSGAELEGVAK 447 (744)
Q Consensus 370 vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~--g~sg~dl~~l~~ 447 (744)
|||+||||+.||||++|||||+..+++++|+.++|.+||+.+++. ...++..|+|++++|+.+. ||+||||..||+
T Consensus 650 viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn--~k~pl~~dVdl~eia~~~~c~gftGADLaaLvr 727 (802)
T KOG0733|consen 650 VIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKN--TKPPLSSDVDLDEIARNTKCEGFTGADLAALVR 727 (802)
T ss_pred EEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhcc--CCCCCCcccCHHHHhhcccccCCchhhHHHHHH
Confidence 999999999999999999999999999999999999999999984 2334899999999999887 999999999999
Q ss_pred HHHHHHHHhccccCCCCCCC---ccccceeehhHHHHHHhhhccCCc
Q 004584 448 SAVSFALNRQLSMDDLTKPV---DEESIKVTMDDFLHALYEIVPAFG 491 (744)
Q Consensus 448 ~A~~~a~~r~~~~~~~~~~~---~~~~~~it~~df~~al~~~~Ps~~ 491 (744)
+|...|+++.+...+..... ......+++.||++|++.++|+..
T Consensus 728 eAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~ 774 (802)
T KOG0733|consen 728 EASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVS 774 (802)
T ss_pred HHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCcc
Confidence 99999998876533322221 111456889999999999999864
No 11
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-48 Score=421.98 Aligned_cols=264 Identities=36% Similarity=0.634 Sum_probs=242.9
Q ss_pred cCCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccc
Q 004584 211 HKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE 290 (744)
Q Consensus 211 ~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~ 290 (744)
.|+++|+| ||||++.+.+| .+.+.+|+.||++|.. |++.+.|||||||||||||++|+|+|.+++ ..|..|.|++
T Consensus 666 IPnV~WdD--VGGLeevK~eI-ldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcs-L~FlSVKGPE 740 (953)
T KOG0736|consen 666 IPNVSWDD--VGGLEEVKTEI-LDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECS-LNFLSVKGPE 740 (953)
T ss_pred CCccchhc--ccCHHHHHHHH-HHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhce-eeEEeecCHH
Confidence 48999999 99999999999 8999999999999865 889999999999999999999999999984 7788999999
Q ss_pred hhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCcc--CCCcE
Q 004584 291 VLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE--SLNNV 368 (744)
Q Consensus 291 l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~--~~~~v 368 (744)
++++|+|++|+++|++|+.|+... |||||+||+|+++|+||.++++.++.++++.|||.+|||+. +...|
T Consensus 741 LLNMYVGqSE~NVR~VFerAR~A~--------PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~V 812 (953)
T KOG0736|consen 741 LLNMYVGQSEENVREVFERARSAA--------PCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDV 812 (953)
T ss_pred HHHHHhcchHHHHHHHHHHhhccC--------CeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCce
Confidence 999999999999999999998764 89999999999999999998888999999999999999998 56689
Q ss_pred EEEEEeCCCCccchhhcCCCccceEEEEcCC-CHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcC-CCChHHHHHHH
Q 004584 369 LLIGMTNRKDMLDEALLRPGRLEVQVEISLP-DENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK-NYSGAELEGVA 446 (744)
Q Consensus 369 ~vI~~tn~~~~id~al~r~gRf~~~i~i~~P-d~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~-g~sg~dl~~l~ 446 (744)
+|||||||||.|||+|+||||||..++++++ |.+.+..+|+..++++. +..++++.++|+.++ .|||||+.++|
T Consensus 813 FViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFk----LdedVdL~eiAk~cp~~~TGADlYsLC 888 (953)
T KOG0736|consen 813 FVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFK----LDEDVDLVEIAKKCPPNMTGADLYSLC 888 (953)
T ss_pred EEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHcc----CCCCcCHHHHHhhCCcCCchhHHHHHH
Confidence 9999999999999999999999999999988 46778999999999998 889999999999985 79999999999
Q ss_pred HHHHHHHHHhccccCCCC----CCCccccceeehhHHHHHHhhhccCCc
Q 004584 447 KSAVSFALNRQLSMDDLT----KPVDEESIKVTMDDFLHALYEIVPAFG 491 (744)
Q Consensus 447 ~~A~~~a~~r~~~~~~~~----~~~~~~~~~it~~df~~al~~~~Ps~~ 491 (744)
..|.+.|++|.+...+.. +........|+++||.++.+++.|+.+
T Consensus 889 SdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS 937 (953)
T KOG0736|consen 889 SDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVS 937 (953)
T ss_pred HHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCccc
Confidence 999999999987644332 334567889999999999999999864
No 12
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-47 Score=363.96 Aligned_cols=297 Identities=30% Similarity=0.521 Sum_probs=258.7
Q ss_pred EcCeEEEEEEEEeeecCcccccccccceecCCcEEEEEecCCCceeeeccccCccccc---cccCCccccccCcCchHHH
Q 004584 151 YHGNNYIFTVNGAAVEGQEKSNALERGIITNETYFVFEASNDSGIKIVNQREGANSNI---FRHKEFNLQSLGIGGLSAE 227 (744)
Q Consensus 151 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~igGl~~~ 227 (744)
.-|.+|..+|.++ .++-++.+++++.+.+..+..+.+.+.+..+.-++ -+.|+++|.| |||+|-|
T Consensus 96 ttgsny~vrilst----------idrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~d--iggld~q 163 (408)
T KOG0727|consen 96 TTGSNYYVRILST----------IDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYAD--IGGLDVQ 163 (408)
T ss_pred ccCCceEEeehhh----------hhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccc--cccchhh
Confidence 4455566666554 45677888888888887777777665442222222 1348999999 9999999
Q ss_pred HHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhcccccchHHHHHHHH
Q 004584 228 FADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLF 307 (744)
Q Consensus 228 ~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~~f 307 (744)
++++ ++++++|+.+.++|++.|+.||+|+|||||||||||++++++|+... ..|+.+.|++|+.+|.|+..+.+|++|
T Consensus 164 kqei-reavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~-a~firvvgsefvqkylgegprmvrdvf 241 (408)
T KOG0727|consen 164 KQEI-REAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT-AAFIRVVGSEFVQKYLGEGPRMVRDVF 241 (408)
T ss_pred HHHH-HHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc-hheeeeccHHHHHHHhccCcHHHHHHH
Confidence 9999 99999999999999999999999999999999999999999999874 556778999999999999999999999
Q ss_pred HHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCC-ccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcC
Q 004584 308 ADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGT-GVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLR 386 (744)
Q Consensus 308 ~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~-~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r 386 (744)
..|+++. |+||||||+|+++.+|...+.+. ...++++-.||++|||++...||-||.+||+.+.+||+|+|
T Consensus 242 rlakena--------psiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallr 313 (408)
T KOG0727|consen 242 RLAKENA--------PSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLR 313 (408)
T ss_pred HHHhccC--------CcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcC
Confidence 9999886 56999999999999987654432 34678888999999999999999999999999999999999
Q ss_pred CCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHHHHHHHhccccCCCCCC
Q 004584 387 PGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKP 466 (744)
Q Consensus 387 ~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~ 466 (744)
|||+++.|+||+||..+++-++...+.+|. +.+++|++.+..+-+..+|+||.++|++|.+.|.+.
T Consensus 314 pgrldrkiefplpdrrqkrlvf~titskm~----ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~---------- 379 (408)
T KOG0727|consen 314 PGRLDRKIEFPLPDRRQKRLVFSTITSKMN----LSDEVDLEDLVARPDKISGADINAICQEAGMLAVRE---------- 379 (408)
T ss_pred CccccccccCCCCchhhhhhhHHhhhhccc----CCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHh----------
Confidence 999999999999999999999999999998 889999999999999999999999999999999873
Q ss_pred CccccceeehhHHHHHHhhh
Q 004584 467 VDEESIKVTMDDFLHALYEI 486 (744)
Q Consensus 467 ~~~~~~~it~~df~~al~~~ 486 (744)
....+...||+++....
T Consensus 380 ---nryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 380 ---NRYVVLQKDFEKAYKTV 396 (408)
T ss_pred ---cceeeeHHHHHHHHHhh
Confidence 34678999999998765
No 13
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-46 Score=358.27 Aligned_cols=284 Identities=34% Similarity=0.559 Sum_probs=246.7
Q ss_pred ccceecCCcEEEEEecCCCceeeeccccCccccc---cccCCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCC
Q 004584 175 ERGIITNETYFVFEASNDSGIKIVNQREGANSNI---FRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGI 251 (744)
Q Consensus 175 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~ 251 (744)
+..-+++++++.+.......-++.+..-.+..++ -+.|+-+|+- |||||+|+++| ++.+++|..||++|+.+|+
T Consensus 102 ~i~~~~~~~rVaLR~dsY~lhkiLpnKvDpLVsLMmVeKvPDStYeM--iGgLd~QIkeI-kEVIeLPvKHPELF~aLGI 178 (404)
T KOG0728|consen 102 DISDVTPSSRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEM--IGGLDKQIKEI-KEVIELPVKHPELFEALGI 178 (404)
T ss_pred cHhhcCCcceEEEeccchHHHHhcccccchhhHHHhhhhCCccHHHH--hccHHHHHHHH-HHHHhccccCHHHHHhcCC
Confidence 4455677888887766555545554321111111 2447888887 99999999999 9999999999999999999
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCc
Q 004584 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEI 331 (744)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEi 331 (744)
..|+|+|||||||||||++||++|+.. +..++.+++++++.+|.|+..+.+|++|-.|+++. |+|||+|||
T Consensus 179 aQPKGvlLygppgtGktLlaraVahht-~c~firvsgselvqk~igegsrmvrelfvmareha--------psiifmdei 249 (404)
T KOG0728|consen 179 AQPKGVLLYGPPGTGKTLLARAVAHHT-DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHA--------PSIIFMDEI 249 (404)
T ss_pred CCCcceEEecCCCCchhHHHHHHHhhc-ceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcC--------CceEeeecc
Confidence 999999999999999999999999997 45677899999999999999999999999999986 569999999
Q ss_pred chhcccCCCCCC-CCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHH
Q 004584 332 DAICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQI 410 (744)
Q Consensus 332 d~l~~~~~~~~~-~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~ 410 (744)
|++...|..+.. +.+..++.+-.||+++||++...++-||.+||+.+-+||+|+||||.|+.|+||+|+++.|.+||++
T Consensus 250 dsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilki 329 (404)
T KOG0728|consen 250 DSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKI 329 (404)
T ss_pred cccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHH
Confidence 999988765433 3345667778899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHHhhhc
Q 004584 411 HTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIV 487 (744)
Q Consensus 411 ~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ 487 (744)
|.++|+ +...+++..+|+...|-+|+++..+|.+|.++|++. ....+|++||+-|...+-
T Consensus 330 hsrkmn----l~rgi~l~kiaekm~gasgaevk~vcteagm~alre-------------rrvhvtqedfemav~kvm 389 (404)
T KOG0728|consen 330 HSRKMN----LTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRE-------------RRVHVTQEDFEMAVAKVM 389 (404)
T ss_pred hhhhhc----hhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHH-------------hhccccHHHHHHHHHHHH
Confidence 999998 778899999999999999999999999999999973 245799999999988763
No 14
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-46 Score=363.59 Aligned_cols=283 Identities=32% Similarity=0.548 Sum_probs=246.7
Q ss_pred ccceecCCcEEEEEecCCCceeeeccccCccccc---cccCCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCC
Q 004584 175 ERGIITNETYFVFEASNDSGIKIVNQREGANSNI---FRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGI 251 (744)
Q Consensus 175 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~ 251 (744)
+.-++.+...|.+.....+.+.+...+-.+..++ -+.|.-+|.| ||||+.|+++| .+.+++|+.||++|+.+|+
T Consensus 140 dKdlLepgcsvll~~k~~avvGvL~d~~dpmv~vmK~eKaP~Ety~d--iGGle~QiQEi-KEsvELPLthPE~YeemGi 216 (440)
T KOG0726|consen 140 DKDLLEPGCSVLLNHKVHAVVGVLQDDTDPMVSVMKVEKAPQETYAD--IGGLESQIQEI-KESVELPLTHPEYYEEMGI 216 (440)
T ss_pred cHhhcCCCCeeeeccccceEEEEeccCCCccceeeecccCchhhhcc--cccHHHHHHHH-HHhhcCCCCCHHHHHHcCC
Confidence 3445666777777776666666665442222222 2347788998 99999999999 9999999999999999999
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCc
Q 004584 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEI 331 (744)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEi 331 (744)
+||+||+|||+||||||+||+++|+..++. |..+-+++++.+|.|+..+.+|++|..|..+. |+|+|||||
T Consensus 217 kpPKGVIlyG~PGTGKTLLAKAVANqTSAT-FlRvvGseLiQkylGdGpklvRqlF~vA~e~a--------pSIvFiDEI 287 (440)
T KOG0726|consen 217 KPPKGVILYGEPGTGKTLLAKAVANQTSAT-FLRVVGSELIQKYLGDGPKLVRELFRVAEEHA--------PSIVFIDEI 287 (440)
T ss_pred CCCCeeEEeCCCCCchhHHHHHHhcccchh-hhhhhhHHHHHHHhccchHHHHHHHHHHHhcC--------CceEEeehh
Confidence 999999999999999999999999998655 45567999999999999999999999999886 569999999
Q ss_pred chhcccCCCCCCC-CccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHH
Q 004584 332 DAICKSRGSTRDG-TGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQI 410 (744)
Q Consensus 332 d~l~~~~~~~~~~-~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~ 410 (744)
|++..+|.++.++ ....++.+-.||+++||+++++.|-||.+||+.+.+||+|.||||.|+.|+|+.||+..+..||.+
T Consensus 288 dAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~I 367 (440)
T KOG0726|consen 288 DAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQI 367 (440)
T ss_pred hhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEE
Confidence 9999999776553 334456666899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHHhhh
Q 004584 411 HTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (744)
Q Consensus 411 ~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~ 486 (744)
|+.+|. +..+++++.+...-+.+|||||.++|.+|.+.|++.. .+.++++||..|.+.+
T Consensus 368 HTs~Mt----l~~dVnle~li~~kddlSGAdIkAictEaGllAlRer-------------Rm~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 368 HTSRMT----LAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER-------------RMKVTMEDFKKAKEKV 426 (440)
T ss_pred eecccc----hhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH-------------HhhccHHHHHHHHHHH
Confidence 999998 8899999999999999999999999999999999743 4679999999998876
No 15
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-45 Score=355.57 Aligned_cols=248 Identities=38% Similarity=0.592 Sum_probs=227.5
Q ss_pred cCCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccc
Q 004584 211 HKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE 290 (744)
Q Consensus 211 ~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~ 290 (744)
.|+-+|+| ||||++|++++ .+++.+|+.+++-|+++|++||+|+|+|||||||||++||++|...++.+ .-+.+++
T Consensus 165 kPtE~YsD--iGGldkQIqEL-vEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTF-LKLAgPQ 240 (424)
T KOG0652|consen 165 KPTEQYSD--IGGLDKQIQEL-VEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATF-LKLAGPQ 240 (424)
T ss_pred CCcccccc--cccHHHHHHHH-HHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchH-HHhcchH
Confidence 37888999 99999999999 79999999999999999999999999999999999999999999986554 4578999
Q ss_pred hhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCC-CCccHHHHHHHHHHhccCccCCCcEE
Q 004584 291 VLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNNVL 369 (744)
Q Consensus 291 l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~-~~~~~~~~~~~LL~~~d~~~~~~~v~ 369 (744)
++..|.|+..+.+|+.|..|++.. |+||||||+|++..+|..+.. +....++.+-.||+++||+.+...|-
T Consensus 241 LVQMfIGdGAkLVRDAFaLAKEka--------P~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vK 312 (424)
T KOG0652|consen 241 LVQMFIGDGAKLVRDAFALAKEKA--------PTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVK 312 (424)
T ss_pred HHhhhhcchHHHHHHHHHHhhccC--------CeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceE
Confidence 999999999999999999998875 779999999999998866532 33345667778999999999999999
Q ss_pred EEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHH
Q 004584 370 LIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSA 449 (744)
Q Consensus 370 vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A 449 (744)
||++||+.+-+||+|+|+||+++.|+||.|+++.|.+|+++|.++|. ..+|+++++||+.|++|+|++..++|-+|
T Consensus 313 viAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMn----v~~DvNfeELaRsTddFNGAQcKAVcVEA 388 (424)
T KOG0652|consen 313 VIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMN----VSDDVNFEELARSTDDFNGAQCKAVCVEA 388 (424)
T ss_pred EEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcC----CCCCCCHHHHhhcccccCchhheeeehhh
Confidence 99999999999999999999999999999999999999999999998 78999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCCCCccccceeehhHHHHHHhhhc
Q 004584 450 VSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIV 487 (744)
Q Consensus 450 ~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ 487 (744)
.+.|++|.. ..++.+||..++.+++
T Consensus 389 GMiALRr~a-------------tev~heDfmegI~eVq 413 (424)
T KOG0652|consen 389 GMIALRRGA-------------TEVTHEDFMEGILEVQ 413 (424)
T ss_pred hHHHHhccc-------------ccccHHHHHHHHHHHH
Confidence 999999753 4689999999988874
No 16
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1.5e-43 Score=341.31 Aligned_cols=310 Identities=28% Similarity=0.425 Sum_probs=257.8
Q ss_pred CHHHHHHHHHHHhcCCccccCcEEEEEEcCeEEEEEEEEeeecCcccccccccceecCCcEEEEEecCCCceeeeccccC
Q 004584 124 DAVLLANQLRKRFINQVMTAGQRVVFEYHGNNYIFTVNGAAVEGQEKSNALERGIITNETYFVFEASNDSGIKIVNQREG 203 (744)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 203 (744)
+.+.|..|.+.+|.|.++..|+.+--.-.=..|.|+|.++.|. ..|+ ..+|.+.+..++...
T Consensus 49 n~~~F~~YArdQW~Ge~v~eg~ylFD~~~~pdyAfkvI~~~P~--------~~~i-~~st~i~vl~~~~~~--------- 110 (368)
T COG1223 49 NPEVFNIYARDQWLGEVVREGDYLFDTRMFPDYAFKVIRVVPS--------GGGI-ITSTTIFVLETPREE--------- 110 (368)
T ss_pred CHHHHHHHHHHhhcceeeecCceEeecccccccceeEEEEeCC--------CCce-ecceEEEEecCcchh---------
Confidence 5688999999999999999999762111112479999999982 2344 445555544432211
Q ss_pred ccccccccCCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCc
Q 004584 204 ANSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEP 283 (744)
Q Consensus 204 ~~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~ 283 (744)
...++ ++++|+| +.|.++.++.. +.+...+.+|+.|.+ ..|++||||||||||||++|+++|++. ..++
T Consensus 111 -~~e~~--~~it~dd--ViGqEeAK~kc--rli~~yLenPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~-kvp~ 179 (368)
T COG1223 111 -DREII--SDITLDD--VIGQEEAKRKC--RLIMEYLENPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEA-KVPL 179 (368)
T ss_pred -hhhhh--ccccHhh--hhchHHHHHHH--HHHHHHhhChHHhcc---cCcceeEEECCCCccHHHHHHHHhccc-CCce
Confidence 12222 6899999 99999988877 566667778876655 679999999999999999999999998 5888
Q ss_pred EEecccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCcc
Q 004584 284 KIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE 363 (744)
Q Consensus 284 ~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~ 363 (744)
+.++.++++++|+|+..+.++++|+.|.... |||+||||+|+|+-.|..++ -.+...+++|.||+.|||+.
T Consensus 180 l~vkat~liGehVGdgar~Ihely~rA~~~a--------PcivFiDE~DAiaLdRryQe-lRGDVsEiVNALLTelDgi~ 250 (368)
T COG1223 180 LLVKATELIGEHVGDGARRIHELYERARKAA--------PCIVFIDELDAIALDRRYQE-LRGDVSEIVNALLTELDGIK 250 (368)
T ss_pred EEechHHHHHHHhhhHHHHHHHHHHHHHhcC--------CeEEEehhhhhhhhhhhHHH-hcccHHHHHHHHHHhccCcc
Confidence 9999999999999999999999999999874 89999999999988776542 23456789999999999999
Q ss_pred CCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHH-
Q 004584 364 SLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAEL- 442 (744)
Q Consensus 364 ~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl- 442 (744)
.+.+|+.||+||+|+.+|+++++ ||..+|+|.+|+.++|.+|++.+.++++ +.-+.+++.+++.|.|+||+||
T Consensus 251 eneGVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~P----lpv~~~~~~~~~~t~g~SgRdik 324 (368)
T COG1223 251 ENEGVVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFP----LPVDADLRYLAAKTKGMSGRDIK 324 (368)
T ss_pred cCCceEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCC----CccccCHHHHHHHhCCCCchhHH
Confidence 99999999999999999999999 9999999999999999999999999998 6778889999999999999999
Q ss_pred HHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHHhhhccCC
Q 004584 443 EGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPAF 490 (744)
Q Consensus 443 ~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~Ps~ 490 (744)
+.+++.|...|+.. +...|+.+|++.|+++.++..
T Consensus 325 ekvlK~aLh~Ai~e-------------d~e~v~~edie~al~k~r~~r 359 (368)
T COG1223 325 EKVLKTALHRAIAE-------------DREKVEREDIEKALKKERKRR 359 (368)
T ss_pred HHHHHHHHHHHHHh-------------chhhhhHHHHHHHHHhhcccc
Confidence 56888888888863 345789999999999765543
No 17
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-44 Score=344.00 Aligned_cols=249 Identities=36% Similarity=0.582 Sum_probs=224.7
Q ss_pred cCCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccc
Q 004584 211 HKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE 290 (744)
Q Consensus 211 ~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~ 290 (744)
.|+++|.| |||..+|++.+ |+.++.|+.+|+-|-++|+.||+|||||||||||||++||++|+..+ ..|+.+-+++
T Consensus 171 kpdvty~d--vggckeqiekl-revve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd-acfirvigse 246 (435)
T KOG0729|consen 171 KPDVTYSD--VGGCKEQIEKL-REVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD-ACFIRVIGSE 246 (435)
T ss_pred CCCccccc--ccchHHHHHHH-HHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC-ceEEeehhHH
Confidence 38999999 99999999999 99999999999999999999999999999999999999999999985 4556677999
Q ss_pred hhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCC-CCCccHHHHHHHHHHhccCccCCCcEE
Q 004584 291 VLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTR-DGTGVHDSIVNQLLTKIDGVESLNNVL 369 (744)
Q Consensus 291 l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~-~~~~~~~~~~~~LL~~~d~~~~~~~v~ 369 (744)
++.+|+|+..+.+|++|+.|+... .||||+||||++...|.... ++....++.+-.|++++||+++++|+-
T Consensus 247 lvqkyvgegarmvrelf~martkk--------aciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnik 318 (435)
T KOG0729|consen 247 LVQKYVGEGARMVRELFEMARTKK--------ACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIK 318 (435)
T ss_pred HHHHHhhhhHHHHHHHHHHhcccc--------eEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeE
Confidence 999999999999999999998764 58999999999998875442 222345566777899999999999999
Q ss_pred EEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHH
Q 004584 370 LIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSA 449 (744)
Q Consensus 370 vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A 449 (744)
|+.+||+|+.+||+|+||||+++.++|.+||.++|.+||++|.+.|. +..++-++-+|+.+.+-+|++|.++|.+|
T Consensus 319 vlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksms----verdir~ellarlcpnstgaeirsvctea 394 (435)
T KOG0729|consen 319 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMS----VERDIRFELLARLCPNSTGAEIRSVCTEA 394 (435)
T ss_pred EEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccc----cccchhHHHHHhhCCCCcchHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998 67888999999999999999999999999
Q ss_pred HHHHHHhccccCCCCCCCccccceeehhHHHHHHhhhcc
Q 004584 450 VSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVP 488 (744)
Q Consensus 450 ~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~P 488 (744)
.++|++-. ....|..||..|...+..
T Consensus 395 gmfairar-------------rk~atekdfl~av~kvvk 420 (435)
T KOG0729|consen 395 GMFAIRAR-------------RKVATEKDFLDAVNKVVK 420 (435)
T ss_pred hHHHHHHH-------------hhhhhHHHHHHHHHHHHH
Confidence 99998632 235789999999987743
No 18
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-43 Score=366.57 Aligned_cols=243 Identities=34% Similarity=0.516 Sum_probs=223.0
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccch
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l 291 (744)
.+++|+| +-|+|+.++++ .+.+ ..+..|+-|.+||-+-||||||.||||||||+|||++|-+. +.+|++..|++|
T Consensus 299 ~nv~F~d--VkG~DEAK~EL-eEiV-efLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA-~VPFF~~sGSEF 373 (752)
T KOG0734|consen 299 KNVTFED--VKGVDEAKQEL-EEIV-EFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA-GVPFFYASGSEF 373 (752)
T ss_pred ccccccc--ccChHHHHHHH-HHHH-HHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc-CCCeEeccccch
Confidence 4788999 99999999999 6655 56788999999999999999999999999999999999996 688999999999
Q ss_pred hcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEE
Q 004584 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLI 371 (744)
Q Consensus 292 ~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI 371 (744)
-..|+|...+++|++|..|+... ||||||||||++..+|..... ...+..++|||.+|||+.++.+|+||
T Consensus 374 dEm~VGvGArRVRdLF~aAk~~A--------PcIIFIDEiDavG~kR~~~~~--~y~kqTlNQLLvEmDGF~qNeGiIvi 443 (752)
T KOG0734|consen 374 DEMFVGVGARRVRDLFAAAKARA--------PCIIFIDEIDAVGGKRNPSDQ--HYAKQTLNQLLVEMDGFKQNEGIIVI 443 (752)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--------CeEEEEechhhhcccCCccHH--HHHHHHHHHHHHHhcCcCcCCceEEE
Confidence 99999999999999999999874 899999999999998876432 36788999999999999999999999
Q ss_pred EEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHHH
Q 004584 372 GMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVS 451 (744)
Q Consensus 372 ~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~ 451 (744)
|+||.|+.+|+||.||||||++|.+|.||..+|.+||+.|+++.. ...++|+..+|+-|.||+|+||+++++.|+.
T Consensus 444 gATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~----~~~~VD~~iiARGT~GFsGAdLaNlVNqAAl 519 (752)
T KOG0734|consen 444 GATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIP----LDEDVDPKIIARGTPGFSGADLANLVNQAAL 519 (752)
T ss_pred eccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCC----cccCCCHhHhccCCCCCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988 6789999999999999999999999999999
Q ss_pred HHHHhccccCCCCCCCccccceeehhHHHHHHhhh
Q 004584 452 FALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (744)
Q Consensus 452 ~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~ 486 (744)
+|.... ...++|.+++.|-.++
T Consensus 520 kAa~dg-------------a~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 520 KAAVDG-------------AEMVTMKHLEFAKDRI 541 (752)
T ss_pred HHHhcC-------------cccccHHHHhhhhhhe
Confidence 987643 3568899998887765
No 19
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-42 Score=352.97 Aligned_cols=262 Identities=32% Similarity=0.498 Sum_probs=231.8
Q ss_pred ccCCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEeccc
Q 004584 210 RHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGP 289 (744)
Q Consensus 210 ~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~ 289 (744)
..|.+.|+| |.||.+.++-| .+++.+|+.-|++|+.+ .+|.||||++||||||||+||+++|.+++ ..|+.|+.+
T Consensus 205 ~np~ikW~D--Iagl~~AK~lL-~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~-tTFFNVSss 279 (491)
T KOG0738|consen 205 RNPNIKWDD--IAGLHEAKKLL-KEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECG-TTFFNVSSS 279 (491)
T ss_pred cCCCcChHh--hcchHHHHHHH-HHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhc-CeEEEechh
Confidence 348899999 99999988766 99999999999999874 57889999999999999999999999985 677889999
Q ss_pred chhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCC-c-
Q 004584 290 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLN-N- 367 (744)
Q Consensus 290 ~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~-~- 367 (744)
.+.+||-|++|+.+|-+|+.|+... |++|||||||+||.+|+... ..+..+++-+.||-+|||+.... +
T Consensus 280 tltSKwRGeSEKlvRlLFemARfyA--------PStIFiDEIDslcs~RG~s~-EHEaSRRvKsELLvQmDG~~~t~e~~ 350 (491)
T KOG0738|consen 280 TLTSKWRGESEKLVRLLFEMARFYA--------PSTIFIDEIDSLCSQRGGSS-EHEASRRVKSELLVQMDGVQGTLENS 350 (491)
T ss_pred hhhhhhccchHHHHHHHHHHHHHhC--------CceeehhhHHHHHhcCCCcc-chhHHHHHHHHHHHHhhccccccccc
Confidence 9999999999999999999999986 56999999999999998763 45778999999999999986532 3
Q ss_pred --EEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHH
Q 004584 368 --VLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGV 445 (744)
Q Consensus 368 --v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l 445 (744)
|+|+|+||.|++||+||+| ||+..|+||+|+.++|..++++.++... +.++++++.+++.++||+|+||.++
T Consensus 351 k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~----~~~~~~~~~lae~~eGySGaDI~nv 424 (491)
T KOG0738|consen 351 KVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVE----LDDPVNLEDLAERSEGYSGADITNV 424 (491)
T ss_pred eeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhcccc----CCCCccHHHHHHHhcCCChHHHHHH
Confidence 9999999999999999999 9999999999999999999999998887 7889999999999999999999999
Q ss_pred HHHHHHHHHHhccccCCCCC----CCccccceeehhHHHHHHhhhccCCc
Q 004584 446 AKSAVSFALNRQLSMDDLTK----PVDEESIKVTMDDFLHALYEIVPAFG 491 (744)
Q Consensus 446 ~~~A~~~a~~r~~~~~~~~~----~~~~~~~~it~~df~~al~~~~Ps~~ 491 (744)
|++|.+.+++|.+....-.+ ........+++.||+.|+..++|+.+
T Consensus 425 CreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 425 CREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred HHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCC
Confidence 99999999998765322111 11122366999999999999999875
No 20
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-41 Score=367.63 Aligned_cols=233 Identities=39% Similarity=0.650 Sum_probs=217.4
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccch
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l 291 (744)
.++.|+| |||+.++++-+ ++.++.|.++|.+|.+.+++.+.|||||||||||||++|.++|..+ ...++.+.|+++
T Consensus 662 tgi~w~d--igg~~~~k~~l-~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~-~~~fisvKGPEl 737 (952)
T KOG0735|consen 662 TGIRWED--IGGLFEAKKVL-EEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS-NLRFISVKGPEL 737 (952)
T ss_pred CCCCcee--cccHHHHHHHH-HHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC-CeeEEEecCHHH
Confidence 4588888 99999988777 9999999999999999999999999999999999999999999997 467888999999
Q ss_pred hcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEE
Q 004584 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLI 371 (744)
Q Consensus 292 ~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI 371 (744)
++||.|.+|+++|++|..|+... |||||+||+|+++|+||.. ++++.+++++|||++|||.+...+|+|+
T Consensus 738 L~KyIGaSEq~vR~lF~rA~~a~--------PCiLFFDEfdSiAPkRGhD--sTGVTDRVVNQlLTelDG~Egl~GV~i~ 807 (952)
T KOG0735|consen 738 LSKYIGASEQNVRDLFERAQSAK--------PCILFFDEFDSIAPKRGHD--STGVTDRVVNQLLTELDGAEGLDGVYIL 807 (952)
T ss_pred HHHHhcccHHHHHHHHHHhhccC--------CeEEEeccccccCcccCCC--CCCchHHHHHHHHHhhccccccceEEEE
Confidence 99999999999999999998764 8999999999999999864 4689999999999999999999999999
Q ss_pred EEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHHH
Q 004584 372 GMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVS 451 (744)
Q Consensus 372 ~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~ 451 (744)
|+|.||+.|||||+||||+|+.++.++|++.+|.+|++...+... +..++|++.+|..|+||+||||..++-.|.+
T Consensus 808 aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~----~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l 883 (952)
T KOG0735|consen 808 AATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLL----KDTDVDLECLAQKTDGFTGADLQSLLYNAQL 883 (952)
T ss_pred EecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccC----CccccchHHHhhhcCCCchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988776 6789999999999999999999999999999
Q ss_pred HHHHhccccCC
Q 004584 452 FALNRQLSMDD 462 (744)
Q Consensus 452 ~a~~r~~~~~~ 462 (744)
.|..+.+...+
T Consensus 884 ~avh~~l~~~~ 894 (952)
T KOG0735|consen 884 AAVHEILKRED 894 (952)
T ss_pred HHHHHHHHhcC
Confidence 99887665443
No 21
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=2.6e-40 Score=358.22 Aligned_cols=286 Identities=30% Similarity=0.507 Sum_probs=246.8
Q ss_pred cccceecCCcEEEEEecCCCceeeeccccCc---cccccccCCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhC
Q 004584 174 LERGIITNETYFVFEASNDSGIKIVNQREGA---NSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLG 250 (744)
Q Consensus 174 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g 250 (744)
.+...+.+.++|.+.......+.+.+....+ ...+.+.|+++|++ |||++.+++++ +++++.|+.+|++|+++|
T Consensus 99 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~d--igGl~~~k~~l-~~~v~~pl~~~~~~~~~G 175 (398)
T PTZ00454 99 LNRELLKPNASVALHRHSHAVVDILPPEADSSIQLLQMSEKPDVTYSD--IGGLDIQKQEI-REAVELPLTCPELYEQIG 175 (398)
T ss_pred cCHhhCCCCCEEEeeccchhHHHhccccccchhhhhcccCCCCCCHHH--cCCHHHHHHHH-HHHHHHHhcCHHHHHhcC
Confidence 3456677888888877666666555443222 12233558999999 99999999999 999999999999999999
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcC
Q 004584 251 IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDE 330 (744)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDE 330 (744)
+++|+|+|||||||||||++|+++|+.++ ..++.+.++++..+|.|+++..++++|..|.... |+||||||
T Consensus 176 l~~pkgvLL~GppGTGKT~LAkalA~~l~-~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~--------P~ILfIDE 246 (398)
T PTZ00454 176 IDPPRGVLLYGPPGTGKTMLAKAVAHHTT-ATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENA--------PSIIFIDE 246 (398)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHhcC-CCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcC--------CeEEEEEC
Confidence 99999999999999999999999999984 5677788999999999999999999999998764 78999999
Q ss_pred cchhcccCCCCCCC-CccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHH
Q 004584 331 IDAICKSRGSTRDG-TGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQ 409 (744)
Q Consensus 331 id~l~~~~~~~~~~-~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~ 409 (744)
+|.++.++.....+ .....+++.+|+..||++....+++||++||+++.+||+++|||||+..|+|++|+.++|.+||+
T Consensus 247 ID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~ 326 (398)
T PTZ00454 247 VDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQ 326 (398)
T ss_pred HhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHH
Confidence 99999877543222 23456788999999999988889999999999999999999999999999999999999999999
Q ss_pred HHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHHhhhcc
Q 004584 410 IHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVP 488 (744)
Q Consensus 410 ~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~P 488 (744)
.+++++. +..++++..++..|+||+|+||.++|++|.+.|+++. ...++++||..|+..+..
T Consensus 327 ~~~~~~~----l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~-------------~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 327 TITSKMN----LSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN-------------RYVILPKDFEKGYKTVVR 388 (398)
T ss_pred HHHhcCC----CCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-------------CCccCHHHHHHHHHHHHh
Confidence 9998877 6788999999999999999999999999999999753 247999999999998744
No 22
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-40 Score=374.89 Aligned_cols=383 Identities=31% Similarity=0.458 Sum_probs=293.8
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCC----CcEEec
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGM----EPKIVN 287 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~----~~~~v~ 287 (744)
..++|++ ||||+..+.++ .+++..|+.+|+.|..+++.||+|+|||||||||||++||++|..+... .++--.
T Consensus 260 ~~v~fd~--vggl~~~i~~L-KEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrk 336 (1080)
T KOG0732|consen 260 SSVGFDS--VGGLENYINQL-KEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRK 336 (1080)
T ss_pred cccCccc--cccHHHHHHHH-HHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhc
Confidence 5788998 99999999999 9999999999999999999999999999999999999999999988422 234457
Q ss_pred ccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCc
Q 004584 288 GPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNN 367 (744)
Q Consensus 288 ~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~ 367 (744)
+++++++|+|+.++.++.+|++|+..+ |+|||+||||-|+|.|.+.+. ..+..++..||..|||++.++.
T Consensus 337 gaD~lskwvgEaERqlrllFeeA~k~q--------PSIIffdeIdGlapvrSskqE--qih~SIvSTLLaLmdGldsRgq 406 (1080)
T KOG0732|consen 337 GADCLSKWVGEAERQLRLLFEEAQKTQ--------PSIIFFDEIDGLAPVRSSKQE--QIHASIVSTLLALMDGLDSRGQ 406 (1080)
T ss_pred CchhhccccCcHHHHHHHHHHHHhccC--------ceEEeccccccccccccchHH--HhhhhHHHHHHHhccCCCCCCc
Confidence 999999999999999999999999987 569999999999999976554 5678899999999999999999
Q ss_pred EEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHH
Q 004584 368 VLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAK 447 (744)
Q Consensus 368 v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~ 447 (744)
|+|||||||++.+||+++|||||+++++|++|+.+.|.+|+.+|+++... .....-+..+|+.+.||.|+||..+|.
T Consensus 407 VvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~---~i~~~l~~~la~~t~gy~gaDlkaLCT 483 (1080)
T KOG0732|consen 407 VVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEP---PISRELLLWLAEETSGYGGADLKALCT 483 (1080)
T ss_pred eEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCC---CCCHHHHHHHHHhccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988762 334456889999999999999999999
Q ss_pred HHHHHHHHhccccCCC---CCCCccccceeehhHHHHHHhhhccCCcccccccccccc----------------cceeec
Q 004584 448 SAVSFALNRQLSMDDL---TKPVDEESIKVTMDDFLHALYEIVPAFGASTDDLERSRL----------------NGMVDC 508 (744)
Q Consensus 448 ~A~~~a~~r~~~~~~~---~~~~~~~~~~it~~df~~al~~~~Ps~~~~~~~l~~~~~----------------~g~~~~ 508 (744)
+|+..+++|.....-. ..........|...||..|+.+..|+..+.......... .+..++
T Consensus 484 eAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~v 563 (1080)
T KOG0732|consen 484 EAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDV 563 (1080)
T ss_pred HHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceecccchHHHHHHhhcchhH
Confidence 9999999886543211 112234455699999999999998887654222111111 011111
Q ss_pred CcchhhHHHHHHHHHHHHHh---cCCCCceeeeeecCCCCChhHHHHHHHhhc-CCCEEEEcccccccccchhhHhhHHH
Q 004584 509 GDRHKHIYQRAMLLVEQVKV---SKGSPLVTCLLEGPSGSGKTALAATAGIDS-DFPFVKIISAESMIGLHESTKCAQIV 584 (744)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Ll~GppG~GKT~la~~~a~~~-~~~~i~v~~~~~~~g~~~~~~~~~i~ 584 (744)
......+-..+...+..... ...--...+++.|..|.|-+.+..++-+.+ +++......+.++.-......+..|.
T Consensus 564 a~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv 643 (1080)
T KOG0732|consen 564 ASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIV 643 (1080)
T ss_pred HhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhccccccHHHHHH
Confidence 00000000001111111111 111122447889999999999998876554 55544333333332222334556789
Q ss_pred HHHHHHhcCCCeEEEEeccchhhccC
Q 004584 585 KVFEDAYKSPLSIIILDDIERLLEYV 610 (744)
Q Consensus 585 ~if~~a~~~~~~il~iDEid~l~~~~ 610 (744)
.+|.+|++..||||||-++|.+....
T Consensus 644 ~i~~eaR~~~psi~~ip~~d~w~~~~ 669 (1080)
T KOG0732|consen 644 HIFMEARKTTPSIVFIPNVDEWARVI 669 (1080)
T ss_pred HHHHHHhccCCceeeccchhhhhhcC
Confidence 99999999999999999999987543
No 23
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.9e-38 Score=345.13 Aligned_cols=284 Identities=32% Similarity=0.520 Sum_probs=243.3
Q ss_pred ccceecCCcEEEEEecCCCceeeeccccCc---cccccccCCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCC
Q 004584 175 ERGIITNETYFVFEASNDSGIKIVNQREGA---NSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGI 251 (744)
Q Consensus 175 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~ 251 (744)
+...+.+.+.+.+.....+.+.+.+.+..+ ...+-+.|..+|++ |||++++++++ ++++..++.+|++|+.+|+
T Consensus 138 ~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~D--IgGl~~qi~~l-~e~v~lpl~~p~~~~~~gi 214 (438)
T PTZ00361 138 DKEQLEPGCSVLLHNKTHSVVGILLDEVDPLVSVMKVDKAPLESYAD--IGGLEQQIQEI-KEAVELPLTHPELYDDIGI 214 (438)
T ss_pred CHhhCCCCCEEEEcCCCCceEecCccccchhhhhcccccCCCCCHHH--hcCHHHHHHHH-HHHHHhhhhCHHHHHhcCC
Confidence 445677788888777666666655432111 11223447889999 99999999999 9999999999999999999
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCc
Q 004584 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEI 331 (744)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEi 331 (744)
.+|+|+|||||||||||++|+++|++++ .+++.+.++++.++|.|+.+..++.+|..|.... |+|||||||
T Consensus 215 ~~p~gVLL~GPPGTGKT~LAraIA~el~-~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~--------P~ILfIDEI 285 (438)
T PTZ00361 215 KPPKGVILYGPPGTGKTLLAKAVANETS-ATFLRVVGSELIQKYLGDGPKLVRELFRVAEENA--------PSIVFIDEI 285 (438)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhC-CCEEEEecchhhhhhcchHHHHHHHHHHHHHhCC--------CcEEeHHHH
Confidence 9999999999999999999999999985 5567788999999999999999999999988764 679999999
Q ss_pred chhcccCCCCCC-CCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHH
Q 004584 332 DAICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQI 410 (744)
Q Consensus 332 d~l~~~~~~~~~-~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~ 410 (744)
|.++.++..... +.....+.+.+||..+|++....++.||++||+++.+|++++|||||++.|+|+.||.++|.+||+.
T Consensus 286 D~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~ 365 (438)
T PTZ00361 286 DAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEI 365 (438)
T ss_pred HHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHH
Confidence 999987754332 2233456778899999999888899999999999999999999999999999999999999999999
Q ss_pred HHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHHhhhc
Q 004584 411 HTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIV 487 (744)
Q Consensus 411 ~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ 487 (744)
+++++. +..++++..++..++||+|+||.++|++|.+.|+++. ...|+.+||..|++.+.
T Consensus 366 ~~~k~~----l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~-------------r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 366 HTSKMT----LAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER-------------RMKVTQADFRKAKEKVL 425 (438)
T ss_pred HHhcCC----CCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc-------------CCccCHHHHHHHHHHHH
Confidence 999887 6778999999999999999999999999999999754 34699999999999874
No 24
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=3.5e-38 Score=343.98 Aligned_cols=286 Identities=36% Similarity=0.586 Sum_probs=239.5
Q ss_pred ceecCCcEEEEEecCCCceeeeccccCc---cccccccCCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCC
Q 004584 177 GIITNETYFVFEASNDSGIKIVNQREGA---NSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKH 253 (744)
Q Consensus 177 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~ 253 (744)
..+.+...+.+.....+..+..+..... ...+...|++.|++ |||++++++++ ++++..++.+|++|+.+|+.+
T Consensus 88 ~~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~d--i~Gl~~~~~~l-~~~i~~pl~~~~~~~~~g~~~ 164 (389)
T PRK03992 88 EKLKPGARVALNQQSLAIVEVLPSEKDPRVQAMEVIESPNVTYED--IGGLEEQIREV-REAVELPLKKPELFEEVGIEP 164 (389)
T ss_pred hHCCCCCEEEEcCcchhhhhcccccccchhheeeecCCCCCCHHH--hCCcHHHHHHH-HHHHHHHhhCHHHHHhcCCCC
Confidence 3445555565554333333333222111 12233457889998 99999999999 999999999999999999999
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcch
Q 004584 254 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDA 333 (744)
Q Consensus 254 ~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~ 333 (744)
|+|+|||||||||||++|+++|+.++ .+++.++++++.++|.|+++..++.+|..|.... |+||||||+|.
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~~-~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~--------p~IlfiDEiD~ 235 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHETN-ATFIRVVGSELVQKFIGEGARLVRELFELAREKA--------PSIIFIDEIDA 235 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHhC-CCEEEeehHHHhHhhccchHHHHHHHHHHHHhcC--------CeEEEEechhh
Confidence 99999999999999999999999985 5677889999999999999999999999998764 67999999999
Q ss_pred hcccCCCCCCC-CccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHH
Q 004584 334 ICKSRGSTRDG-TGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHT 412 (744)
Q Consensus 334 l~~~~~~~~~~-~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~ 412 (744)
++.++.....+ .....+.+.+++..++++...+++.||++||+++.+|++++|||||+..|+|++|+.++|.+||+.++
T Consensus 236 l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~ 315 (389)
T PRK03992 236 IAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHT 315 (389)
T ss_pred hhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHh
Confidence 99877654322 23345677889999999988889999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHHhhhccCCc
Q 004584 413 NKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPAFG 491 (744)
Q Consensus 413 ~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~Ps~~ 491 (744)
+++. +..+.++..++..|+||+|+||.++|++|.+.|+++. ...|+.+||..|+..++++..
T Consensus 316 ~~~~----~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~-------------~~~i~~~d~~~A~~~~~~~~~ 377 (389)
T PRK03992 316 RKMN----LADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD-------------RTEVTMEDFLKAIEKVMGKEE 377 (389)
T ss_pred ccCC----CCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-------------CCCcCHHHHHHHHHHHhcccc
Confidence 8876 5667899999999999999999999999999998752 235899999999999988653
No 25
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-39 Score=357.97 Aligned_cols=247 Identities=36% Similarity=0.589 Sum_probs=224.7
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccch
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l 291 (744)
..++|.| +.|+|+.+++| .+.+ ..+.+|+.|.++|.+.|||+||+||||||||+||+|+|.+. +.||+.+++++|
T Consensus 306 t~V~FkD--VAG~deAK~El-~E~V-~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-gVPF~svSGSEF 380 (774)
T KOG0731|consen 306 TGVKFKD--VAGVDEAKEEL-MEFV-KFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSVSGSEF 380 (774)
T ss_pred CCCcccc--ccCcHHHHHHH-HHHH-HHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-CCceeeechHHH
Confidence 4589999 99999999999 6654 67889999999999999999999999999999999999996 799999999999
Q ss_pred hcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCC--CCCCCccHHHHHHHHHHhccCccCCCcEE
Q 004584 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGS--TRDGTGVHDSIVNQLLTKIDGVESLNNVL 369 (744)
Q Consensus 292 ~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~--~~~~~~~~~~~~~~LL~~~d~~~~~~~v~ 369 (744)
+..+.|....+++++|..|+... ||||||||||++..+|+. ...++......++|||.+|||+....+|+
T Consensus 381 vE~~~g~~asrvr~lf~~ar~~a--------P~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi 452 (774)
T KOG0731|consen 381 VEMFVGVGASRVRDLFPLARKNA--------PSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVI 452 (774)
T ss_pred HHHhcccchHHHHHHHHHhhccC--------CeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEE
Confidence 99999999999999999999875 789999999999999852 23455677889999999999999999999
Q ss_pred EEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHH
Q 004584 370 LIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSA 449 (744)
Q Consensus 370 vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A 449 (744)
|+++||+++-+|+||+||||||++|.++.||..+|.+|++.|+++.+.. .+++++..+|..|+||+|+||.++|.+|
T Consensus 453 ~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~---~e~~dl~~~a~~t~gf~gadl~n~~nea 529 (774)
T KOG0731|consen 453 VLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD---DEDVDLSKLASLTPGFSGADLANLCNEA 529 (774)
T ss_pred EEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC---cchhhHHHHHhcCCCCcHHHHHhhhhHH
Confidence 9999999999999999999999999999999999999999999987732 4778899999999999999999999999
Q ss_pred HHHHHHhccccCCCCCCCccccceeehhHHHHHHhhhc
Q 004584 450 VSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIV 487 (744)
Q Consensus 450 ~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ 487 (744)
+..|.++. ...|+..||+.|++.+.
T Consensus 530 a~~a~r~~-------------~~~i~~~~~~~a~~Rvi 554 (774)
T KOG0731|consen 530 ALLAARKG-------------LREIGTKDLEYAIERVI 554 (774)
T ss_pred HHHHHHhc-------------cCccchhhHHHHHHHHh
Confidence 99998854 34689999999999653
No 26
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-39 Score=315.91 Aligned_cols=263 Identities=29% Similarity=0.493 Sum_probs=227.4
Q ss_pred cccCCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecc
Q 004584 209 FRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNG 288 (744)
Q Consensus 209 ~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~ 288 (744)
.+.|++.|+| |.||+..++.+ .+++.+|+..|++|.. +-.|.+||||||||||||++||+++|.+.+ ..|+.|+.
T Consensus 125 ~EKPNVkWsD--VAGLE~AKeAL-KEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAn-STFFSvSS 199 (439)
T KOG0739|consen 125 REKPNVKWSD--VAGLEGAKEAL-KEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEAN-STFFSVSS 199 (439)
T ss_pred ccCCCCchhh--hccchhHHHHH-HhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcC-CceEEeeh
Confidence 3559999999 99999999988 9999999999999876 346789999999999999999999999986 66778999
Q ss_pred cchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCC-Cc
Q 004584 289 PEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESL-NN 367 (744)
Q Consensus 289 ~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~-~~ 367 (744)
++++++|.|++++.++++|+.|++.. |+||||||||++|..|+...+ +..+++-..||-+|.|+... .+
T Consensus 200 SDLvSKWmGESEkLVknLFemARe~k--------PSIIFiDEiDslcg~r~enEs--easRRIKTEfLVQMqGVG~d~~g 269 (439)
T KOG0739|consen 200 SDLVSKWMGESEKLVKNLFEMARENK--------PSIIFIDEIDSLCGSRSENES--EASRRIKTEFLVQMQGVGNDNDG 269 (439)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhcC--------CcEEEeehhhhhccCCCCCch--HHHHHHHHHHHHhhhccccCCCc
Confidence 99999999999999999999999886 569999999999998876544 67899999999999998654 47
Q ss_pred EEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHH
Q 004584 368 VLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAK 447 (744)
Q Consensus 368 v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~ 447 (744)
|+|+|+||-|+.+|.+++| ||+..|+||+|+...|..+++.|+...+. ...+.|+.+|++.|+||+|+||.-+++
T Consensus 270 vLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~---~LT~~d~~eL~~kTeGySGsDisivVr 344 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPH---VLTEQDFKELARKTEGYSGSDISIVVR 344 (439)
T ss_pred eEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCcc---ccchhhHHHHHhhcCCCCcCceEEEeh
Confidence 9999999999999999999 99999999999999999999999988764 356789999999999999999999999
Q ss_pred HHHHHHHHhccccCCC---CC---------------C---------------CccccceeehhHHHHHHhhhccCCc
Q 004584 448 SAVSFALNRQLSMDDL---TK---------------P---------------VDEESIKVTMDDFLHALYEIVPAFG 491 (744)
Q Consensus 448 ~A~~~a~~r~~~~~~~---~~---------------~---------------~~~~~~~it~~df~~al~~~~Ps~~ 491 (744)
.|.+...++..+...+ .. + ...-...+|+.||..++...+|...
T Consensus 345 DalmePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn 421 (439)
T KOG0739|consen 345 DALMEPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVN 421 (439)
T ss_pred hhhhhhHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCC
Confidence 9999988764321100 00 0 0112357899999999999999753
No 27
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.2e-37 Score=367.27 Aligned_cols=264 Identities=44% Similarity=0.690 Sum_probs=234.7
Q ss_pred cCCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccc
Q 004584 211 HKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE 290 (744)
Q Consensus 211 ~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~ 290 (744)
.|.++|++ |||++..++++ ++++..++.+|++++++|+++|+|+|||||||||||++|+++|++++ .+++.+++++
T Consensus 447 ~~~~~~~d--i~g~~~~k~~l-~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~-~~fi~v~~~~ 522 (733)
T TIGR01243 447 VPNVRWSD--IGGLEEVKQEL-REAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG-ANFIAVRGPE 522 (733)
T ss_pred ccccchhh--cccHHHHHHHH-HHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC-CCEEEEehHH
Confidence 36778888 99999999998 99999999999999999999999999999999999999999999984 6778899999
Q ss_pred hhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEE
Q 004584 291 VLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLL 370 (744)
Q Consensus 291 l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~v 370 (744)
+.++|+|+++..++++|..|.... ||||||||+|.+++.++.... ....++++++||..||++....+++|
T Consensus 523 l~~~~vGese~~i~~~f~~A~~~~--------p~iifiDEid~l~~~r~~~~~-~~~~~~~~~~lL~~ldg~~~~~~v~v 593 (733)
T TIGR01243 523 ILSKWVGESEKAIREIFRKARQAA--------PAIIFFDEIDAIAPARGARFD-TSVTDRIVNQLLTEMDGIQELSNVVV 593 (733)
T ss_pred HhhcccCcHHHHHHHHHHHHHhcC--------CEEEEEEChhhhhccCCCCCC-ccHHHHHHHHHHHHhhcccCCCCEEE
Confidence 999999999999999999998764 789999999999998875432 35678999999999999988889999
Q ss_pred EEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHH
Q 004584 371 IGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAV 450 (744)
Q Consensus 371 I~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~ 450 (744)
|+|||+|+.||++++|||||+..|++++||.++|.+||+.++++++ +..++++..+|+.|+||+|+||.++|++|+
T Consensus 594 I~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~----~~~~~~l~~la~~t~g~sgadi~~~~~~A~ 669 (733)
T TIGR01243 594 IAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP----LAEDVDLEELAEMTEGYTGADIEAVCREAA 669 (733)
T ss_pred EEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC----CCccCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998876 678899999999999999999999999999
Q ss_pred HHHHHhccccCC---CCC--CCccccceeehhHHHHHHhhhccCCc
Q 004584 451 SFALNRQLSMDD---LTK--PVDEESIKVTMDDFLHALYEIVPAFG 491 (744)
Q Consensus 451 ~~a~~r~~~~~~---~~~--~~~~~~~~it~~df~~al~~~~Ps~~ 491 (744)
..|+++...... ... ........++++||..|++.++|+..
T Consensus 670 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~ 715 (733)
T TIGR01243 670 MAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVS 715 (733)
T ss_pred HHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCCCC
Confidence 999987644221 100 01123457999999999999999863
No 28
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-37 Score=352.31 Aligned_cols=253 Identities=43% Similarity=0.693 Sum_probs=230.8
Q ss_pred ccCCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEeccc
Q 004584 210 RHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGP 289 (744)
Q Consensus 210 ~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~ 289 (744)
..+.+.|++ |||++...+.+ ++++..++.+|+.|.+.|+++++|+|||||||||||++|+++|+++ +.++..+.++
T Consensus 235 ~~~~v~~~d--iggl~~~k~~l-~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~-~~~fi~v~~~ 310 (494)
T COG0464 235 EDEDVTLDD--IGGLEEAKEEL-KEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES-RSRFISVKGS 310 (494)
T ss_pred CCCCcceeh--hhcHHHHHHHH-HHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC-CCeEEEeeCH
Confidence 347788888 99999999988 9999999999999999999999999999999999999999999987 4667788889
Q ss_pred chhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEE
Q 004584 290 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVL 369 (744)
Q Consensus 290 ~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~ 369 (744)
+++++|+|+++++++++|..|.... ||||||||+|++++.++...+ +...+++++||.+|++++...+|+
T Consensus 311 ~l~sk~vGesek~ir~~F~~A~~~~--------p~iiFiDEiDs~~~~r~~~~~--~~~~r~~~~lL~~~d~~e~~~~v~ 380 (494)
T COG0464 311 ELLSKWVGESEKNIRELFEKARKLA--------PSIIFIDEIDSLASGRGPSED--GSGRRVVGQLLTELDGIEKAEGVL 380 (494)
T ss_pred HHhccccchHHHHHHHHHHHHHcCC--------CcEEEEEchhhhhccCCCCCc--hHHHHHHHHHHHHhcCCCccCceE
Confidence 9999999999999999999999664 789999999999999876543 234799999999999999999999
Q ss_pred EEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHH
Q 004584 370 LIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSA 449 (744)
Q Consensus 370 vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A 449 (744)
||++||+|+.+|++++|||||+..+++++||.++|.+||+.|+++.... +..++++..+++.|+||+|+||..+|++|
T Consensus 381 vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~--~~~~~~~~~l~~~t~~~sgadi~~i~~ea 458 (494)
T COG0464 381 VIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPP--LAEDVDLEELAEITEGYSGADIAALVREA 458 (494)
T ss_pred EEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCc--chhhhhHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999865532 46789999999999999999999999999
Q ss_pred HHHHHHhccccCCCCCCCccccceeehhHHHHHHhhhccCC
Q 004584 450 VSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPAF 490 (744)
Q Consensus 450 ~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~Ps~ 490 (744)
.+.++.+.. ...++.+||..|++.++|+.
T Consensus 459 ~~~~~~~~~------------~~~~~~~~~~~a~~~~~p~~ 487 (494)
T COG0464 459 ALEALREAR------------RREVTLDDFLDALKKIKPSV 487 (494)
T ss_pred HHHHHHHhc------------cCCccHHHHHHHHHhcCCCC
Confidence 999998643 34699999999999999875
No 29
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-39 Score=316.06 Aligned_cols=247 Identities=35% Similarity=0.578 Sum_probs=219.3
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccch
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l 291 (744)
-+++|+. +||+-.++.++ ++.++.|+.+|++|.++|+++|++++||||||||||++|+++|+.+. .+++.+..+++
T Consensus 127 ~~~s~~~--~ggl~~qirel-re~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg-~nfl~v~ss~l 202 (388)
T KOG0651|consen 127 RNISFEN--VGGLFYQIREL-REVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMG-VNFLKVVSSAL 202 (388)
T ss_pred cccCHHH--hCChHHHHHHH-HhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcC-CceEEeeHhhh
Confidence 5688998 99999999999 99999999999999999999999999999999999999999999995 55666778999
Q ss_pred hcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCC-CCccHHHHHHHHHHhccCccCCCcEEE
Q 004584 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNNVLL 370 (744)
Q Consensus 292 ~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~-~~~~~~~~~~~LL~~~d~~~~~~~v~v 370 (744)
.++|.|++.+.||+.|..|.... |||||+||||++..++.+... .....++.+-.|+++||+++..++|-+
T Consensus 203 v~kyiGEsaRlIRemf~yA~~~~--------pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ 274 (388)
T KOG0651|consen 203 VDKYIGESARLIRDMFRYAREVI--------PCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKT 274 (388)
T ss_pred hhhhcccHHHHHHHHHHHHhhhC--------ceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccE
Confidence 99999999999999999999986 689999999999988844322 122334555668899999999999999
Q ss_pred EEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHH
Q 004584 371 IGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAV 450 (744)
Q Consensus 371 I~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~ 450 (744)
|+|||+|+.+||+|+||||+++.+++|+|++..|..|++.|...+. ...+.+.+.+.+.++||+|+|+.+.|++|.
T Consensus 275 ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~----~~Geid~eaivK~~d~f~gad~rn~~tEag 350 (388)
T KOG0651|consen 275 IMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPID----FHGEIDDEAILKLVDGFNGADLRNVCTEAG 350 (388)
T ss_pred EEecCCccccchhhcCCccccceeccCCcchhhceeeEeecccccc----ccccccHHHHHHHHhccChHHHhhhccccc
Confidence 9999999999999999999999999999999999999999998887 456677999999999999999999999999
Q ss_pred HHHHHhccccCCCCCCCccccceeehhHHHHHHhhhc
Q 004584 451 SFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIV 487 (744)
Q Consensus 451 ~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ 487 (744)
++++.. +...+.++||..+..++.
T Consensus 351 ~Fa~~~-------------~~~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 351 MFAIPE-------------ERDEVLHEDFMKLVRKQA 374 (388)
T ss_pred ccccch-------------hhHHHhHHHHHHHHHHHH
Confidence 888753 345678899999887653
No 30
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-37 Score=317.24 Aligned_cols=257 Identities=32% Similarity=0.483 Sum_probs=222.9
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhC-CCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccch
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLG-IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g-~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l 291 (744)
+++|+| ||||+..++++ ++.+.+|+..|++|..-+ +++++|||||||||||||++|+++|++. +..++-|..+.+
T Consensus 88 ~v~f~D--IggLe~v~~~L-~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea-ga~fInv~~s~l 163 (386)
T KOG0737|consen 88 GVSFDD--IGGLEEVKDAL-QELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA-GANFINVSVSNL 163 (386)
T ss_pred eeehhh--ccchHHHHHHH-HHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc-CCCcceeecccc
Confidence 567888 99999999999 999999999999997544 4789999999999999999999999997 566788999999
Q ss_pred hcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCc--EE
Q 004584 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNN--VL 369 (744)
Q Consensus 292 ~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~--v~ 369 (744)
.++|+|+.++.++.+|..|...+ |+||||||+|.++..|++ ...+....+-+++...+||+....+ |+
T Consensus 164 t~KWfgE~eKlv~AvFslAsKl~--------P~iIFIDEvds~L~~R~s--~dHEa~a~mK~eFM~~WDGl~s~~~~rVl 233 (386)
T KOG0737|consen 164 TSKWFGEAQKLVKAVFSLASKLQ--------PSIIFIDEVDSFLGQRRS--TDHEATAMMKNEFMALWDGLSSKDSERVL 233 (386)
T ss_pred chhhHHHHHHHHHHHHhhhhhcC--------cceeehhhHHHHHhhccc--chHHHHHHHHHHHHHHhccccCCCCceEE
Confidence 99999999999999999999775 679999999999998843 3457788899999999999987765 99
Q ss_pred EEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHH
Q 004584 370 LIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSA 449 (744)
Q Consensus 370 vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A 449 (744)
|+||||||.++|.|+.| |+.+.+++++|+..+|.+||+..+++-+ +.+++|+.++|..|+||||.||..+|+.|
T Consensus 234 VlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~----~e~~vD~~~iA~~t~GySGSDLkelC~~A 307 (386)
T KOG0737|consen 234 VLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEK----LEDDVDLDEIAQMTEGYSGSDLKELCRLA 307 (386)
T ss_pred EEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccc----cCcccCHHHHHHhcCCCcHHHHHHHHHHH
Confidence 99999999999999999 9999999999999999999999998766 77999999999999999999999999999
Q ss_pred HHHHHHhccccC----CCCCC----C-------ccccceeehhHHHHHHhhhccC
Q 004584 450 VSFALNRQLSMD----DLTKP----V-------DEESIKVTMDDFLHALYEIVPA 489 (744)
Q Consensus 450 ~~~a~~r~~~~~----~~~~~----~-------~~~~~~it~~df~~al~~~~Ps 489 (744)
+...++..+..+ +.... . .-....++++||..+...+.++
T Consensus 308 a~~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~ 362 (386)
T KOG0737|consen 308 ALRPIRELLVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSAS 362 (386)
T ss_pred hHhHHHHHHHhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhH
Confidence 999987766543 11100 0 0114667788888888776554
No 31
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-37 Score=338.69 Aligned_cols=245 Identities=36% Similarity=0.596 Sum_probs=225.7
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccch
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l 291 (744)
..++|.| +.|.|+.++++ .+.+ ..+..|.-|..+|.+.|+|+||+||||||||++||++|.+. +.+++.++++++
T Consensus 145 ~~v~F~D--VAG~dEakeel-~EiV-dfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-~VPFf~iSGS~F 219 (596)
T COG0465 145 VKVTFAD--VAGVDEAKEEL-SELV-DFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-GVPFFSISGSDF 219 (596)
T ss_pred cCcChhh--hcCcHHHHHHH-HHHH-HHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-CCCceeccchhh
Confidence 5688999 99999999999 5544 67788999999999999999999999999999999999997 688999999999
Q ss_pred hcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCC-CCCCccHHHHHHHHHHhccCccCCCcEEE
Q 004584 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGST-RDGTGVHDSIVNQLLTKIDGVESLNNVLL 370 (744)
Q Consensus 292 ~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~-~~~~~~~~~~~~~LL~~~d~~~~~~~v~v 370 (744)
+..|+|-..+.+|++|.+|++.+ ||||||||||++..+|+.. .+++....+.++|||.+|||+..+..|++
T Consensus 220 VemfVGvGAsRVRdLF~qAkk~a--------P~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviv 291 (596)
T COG0465 220 VEMFVGVGASRVRDLFEQAKKNA--------PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIV 291 (596)
T ss_pred hhhhcCCCcHHHHHHHHHhhccC--------CCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEE
Confidence 99999999999999999999875 7899999999999999755 33556677899999999999998889999
Q ss_pred EEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHH
Q 004584 371 IGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAV 450 (744)
Q Consensus 371 I~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~ 450 (744)
|++||||+-+||||+||||||++|.++.||..+|.+|++.|.++.+ +.+++++..+|+.|.||+|+|+.+++.+|+
T Consensus 292 iaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~----l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAa 367 (596)
T COG0465 292 IAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKP----LAEDVDLKKIARGTPGFSGADLANLLNEAA 367 (596)
T ss_pred EecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCC----CCCcCCHHHHhhhCCCcccchHhhhHHHHH
Confidence 9999999999999999999999999999999999999999998877 778999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCCCccccceeehhHHHHHHhhh
Q 004584 451 SFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (744)
Q Consensus 451 ~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~ 486 (744)
..|.++. ...+++.||..|..++
T Consensus 368 l~aar~n-------------~~~i~~~~i~ea~drv 390 (596)
T COG0465 368 LLAARRN-------------KKEITMRDIEEAIDRV 390 (596)
T ss_pred HHHHHhc-------------CeeEeccchHHHHHHH
Confidence 9998864 4579999999999887
No 32
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=7.2e-36 Score=329.91 Aligned_cols=248 Identities=25% Similarity=0.383 Sum_probs=211.5
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccch
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l 291 (744)
++.+|++ |||++..++.+ ++.... .+.....+|+++|+|+|||||||||||++|+++|+++ +.+++.+++..+
T Consensus 223 ~~~~~~d--vgGl~~lK~~l-~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~-~~~~~~l~~~~l 295 (489)
T CHL00195 223 VNEKISD--IGGLDNLKDWL-KKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW-QLPLLRLDVGKL 295 (489)
T ss_pred CCCCHHH--hcCHHHHHHHH-HHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh-CCCEEEEEhHHh
Confidence 5778888 99999988877 432221 1334577899999999999999999999999999998 578888999999
Q ss_pred hcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEE
Q 004584 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLI 371 (744)
Q Consensus 292 ~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI 371 (744)
.++|+|+++.+++++|..|.... ||||||||||.++.++.... ..+...+++.+++..|+. ...+++||
T Consensus 296 ~~~~vGese~~l~~~f~~A~~~~--------P~IL~IDEID~~~~~~~~~~-d~~~~~rvl~~lL~~l~~--~~~~V~vI 364 (489)
T CHL00195 296 FGGIVGESESRMRQMIRIAEALS--------PCILWIDEIDKAFSNSESKG-DSGTTNRVLATFITWLSE--KKSPVFVV 364 (489)
T ss_pred cccccChHHHHHHHHHHHHHhcC--------CcEEEehhhhhhhccccCCC-CchHHHHHHHHHHHHHhc--CCCceEEE
Confidence 99999999999999999988764 78999999999987654332 235678899999999884 44689999
Q ss_pred EEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHHH
Q 004584 372 GMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVS 451 (744)
Q Consensus 372 ~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~ 451 (744)
+|||+++.||++++|+|||+..+++++|+.++|.+||+.|+++.... ...+.+++.+|+.|+||||+||+++|.+|..
T Consensus 365 aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~--~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~ 442 (489)
T CHL00195 365 ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPK--SWKKYDIKKLSKLSNKFSGAEIEQSIIEAMY 442 (489)
T ss_pred EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCC--cccccCHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999886421 2347889999999999999999999999999
Q ss_pred HHHHhccccCCCCCCCccccceeehhHHHHHHhhhccCCccc
Q 004584 452 FALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPAFGAS 493 (744)
Q Consensus 452 ~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~Ps~~~~ 493 (744)
.|..+. ..++.+||..|+..+.|.+...
T Consensus 443 ~A~~~~--------------~~lt~~dl~~a~~~~~Pls~~~ 470 (489)
T CHL00195 443 IAFYEK--------------REFTTDDILLALKQFIPLAQTE 470 (489)
T ss_pred HHHHcC--------------CCcCHHHHHHHHHhcCCCcccC
Confidence 887532 3589999999999999986433
No 33
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=1.4e-34 Score=314.85 Aligned_cols=249 Identities=41% Similarity=0.654 Sum_probs=220.3
Q ss_pred cccCCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecc
Q 004584 209 FRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNG 288 (744)
Q Consensus 209 ~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~ 288 (744)
.+.|.+.|++ |||++++++++ ++++..++.+|+.|..+|+.+|+|+|||||||||||++|+++|+.++ .++..+.+
T Consensus 114 ~~~p~~~~~d--i~Gl~~~~~~l-~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~-~~~~~v~~ 189 (364)
T TIGR01242 114 EERPNVSYED--IGGLEEQIREI-REAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN-ATFIRVVG 189 (364)
T ss_pred ccCCCCCHHH--hCChHHHHHHH-HHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC-CCEEecch
Confidence 3458889998 99999999999 89999999999999999999999999999999999999999999985 55667788
Q ss_pred cchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCC-CCccHHHHHHHHHHhccCccCCCc
Q 004584 289 PEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNN 367 (744)
Q Consensus 289 ~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~-~~~~~~~~~~~LL~~~d~~~~~~~ 367 (744)
.++..+|.|+....++.+|+.+.... |+||||||+|.++.++..... +.....+.+.+++..++++...++
T Consensus 190 ~~l~~~~~g~~~~~i~~~f~~a~~~~--------p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~ 261 (364)
T TIGR01242 190 SELVRKYIGEGARLVREIFELAKEKA--------PSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGN 261 (364)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcC--------CcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 89999999999999999999887654 679999999999877654322 222345677889999999887789
Q ss_pred EEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHH
Q 004584 368 VLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAK 447 (744)
Q Consensus 368 v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~ 447 (744)
+.||++||+++.+|++++|||||+..|+|+.|+.++|.+||+.++.++. +..+.++..+++.+.||+|+||.++|+
T Consensus 262 v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~----l~~~~~~~~la~~t~g~sg~dl~~l~~ 337 (364)
T TIGR01242 262 VKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMK----LAEDVDLEAIAKMTEGASGADLKAICT 337 (364)
T ss_pred EEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCC----CCccCCHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998876 556789999999999999999999999
Q ss_pred HHHHHHHHhccccCCCCCCCccccceeehhHHHHHHhhh
Q 004584 448 SAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (744)
Q Consensus 448 ~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~ 486 (744)
+|.+.|+++. ...|+.+||..|+..+
T Consensus 338 ~A~~~a~~~~-------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 338 EAGMFAIREE-------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHHHHHHHhC-------------CCccCHHHHHHHHHHh
Confidence 9999998753 3469999999998764
No 34
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=4e-35 Score=322.94 Aligned_cols=257 Identities=34% Similarity=0.590 Sum_probs=208.1
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCC---------C
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGM---------E 282 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~---------~ 282 (744)
|+++|++ |||++++++++ ++++..++.+|++|..+|+++|+|+|||||||||||++|+++|+.+... .
T Consensus 177 p~v~~~d--IgGl~~~i~~i-~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 177 PDVTYAD--IGGLDSQIEQI-RDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred CCCCHHH--cCChHHHHHHH-HHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 7889999 99999999999 9999999999999999999999999999999999999999999998422 2
Q ss_pred cEEecccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCc
Q 004584 283 PKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV 362 (744)
Q Consensus 283 ~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~ 362 (744)
++.+.+++++++|.|++++.++.+|..+..... ...|+||||||+|.++.+++... +.+...+++++||..||++
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~----~g~p~IIfIDEiD~L~~~R~~~~-s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKAS----DGRPVIVFFDEMDSIFRTRGSGV-SSDVETTVVPQLLSELDGV 328 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhh----cCCCceEEEehhhhhhcccCCCc-cchHHHHHHHHHHHHhccc
Confidence 345678899999999999999999999876531 12488999999999998876532 2345678899999999999
Q ss_pred cCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhc-ccccCCC-----CCcccHHHHHH----
Q 004584 363 ESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNK-MKENSFL-----APDVNLQELAA---- 432 (744)
Q Consensus 363 ~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~-~~~~~~~-----~~~~~l~~la~---- 432 (744)
...++++||++||+++.|||+++|||||+.+|+|+.|+.++|.+||+.++.. ++....+ ....++..+++
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~ 408 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVD 408 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHH
Confidence 9888999999999999999999999999999999999999999999998764 2210000 01112222222
Q ss_pred -------------------------hcCCCChHHHHHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHHhh
Q 004584 433 -------------------------RTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYE 485 (744)
Q Consensus 433 -------------------------~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~ 485 (744)
.++.+||++|.++|.+|...|+.+.+.. ....++.+|+..|+..
T Consensus 409 ~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~---------~~~~~~~~~l~~a~~~ 477 (512)
T TIGR03689 409 HLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITG---------GQVGLRIEHLLAAVLD 477 (512)
T ss_pred HHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhc---------CCcCcCHHHHHHHHHH
Confidence 1455788888888888888888776531 1246788999888874
No 35
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-35 Score=297.92 Aligned_cols=236 Identities=20% Similarity=0.273 Sum_probs=199.3
Q ss_pred cccccceeecCcchhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhh
Q 004584 499 RSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHEST 578 (744)
Q Consensus 499 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~ 578 (744)
...++|+..-..++.+.++.+....+.+...+..||++||||||||||||++|||+|+..+..|+++.+++ ++-+|.++
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSE-lVqKYiGE 228 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSE-LVQKYIGE 228 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHH-HHHHHhcc
Confidence 34456666655666677777788889999999999999999999999999999999999999999998887 56666667
Q ss_pred HhhHHHHHHHHHhcCCCeEEEEeccchhhccC-CCCcchhHHHHHHHHHHhccCC--CCCCcEEEEEeCCCCCCCCcccc
Q 004584 579 KCAQIVKVFEDAYKSPLSIIILDDIERLLEYV-PIGPRFSNIISQTMLVLLKRLP--PKGKKLLVIGTTSEVSFLDSVGI 655 (744)
Q Consensus 579 ~~~~i~~if~~a~~~~~~il~iDEid~l~~~~-~~g~~~~~~~~~~Ll~~l~~~~--~~~~~v~vi~~tn~~~~l~~~~l 655 (744)
....++++|.-|+...||||||||||++...| +.+....+.+|++++++|.+++ +...+|-||+|||+++.|||+.|
T Consensus 229 GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALL 308 (406)
T COG1222 229 GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALL 308 (406)
T ss_pred chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhc
Confidence 77789999999999999999999999999876 3344456788888888877765 34568999999999999999999
Q ss_pred c-cccceEEEcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcc
Q 004584 656 C-DAFSVTYHVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIK 730 (744)
Q Consensus 656 ~-~rf~~~i~~p~~~~~~~~~Il~~~----~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It 730 (744)
| +|||+.|+||+|+.+.+.+||+-. ....+-++..++....+.+..++.+++..|...| ++.++..||
T Consensus 309 RPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~A-------iR~~R~~Vt 381 (406)
T COG1222 309 RPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFA-------IRERRDEVT 381 (406)
T ss_pred CCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHH-------HHhccCeec
Confidence 8 999999999999999999999942 3344456677777777888888899999998884 456889999
Q ss_pred hhhHHHHHHHHh
Q 004584 731 ISHFYDCLQDMV 742 (744)
Q Consensus 731 ~e~~~~al~~~~ 742 (744)
++||.+|.++++
T Consensus 382 ~~DF~~Av~KV~ 393 (406)
T COG1222 382 MEDFLKAVEKVV 393 (406)
T ss_pred HHHHHHHHHHHH
Confidence 999999999886
No 36
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=2.6e-34 Score=324.53 Aligned_cols=247 Identities=36% Similarity=0.627 Sum_probs=218.9
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccch
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l 291 (744)
+.++|++ |+|+++.++++ ++++.. +.+|+.+.++|.++|+|+|||||||||||++|+++|+++ +.+++.++++++
T Consensus 50 ~~~~~~d--i~g~~~~k~~l-~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~-~~~~~~i~~~~~ 124 (495)
T TIGR01241 50 PKVTFKD--VAGIDEAKEEL-MEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-GVPFFSISGSDF 124 (495)
T ss_pred CCCCHHH--hCCHHHHHHHH-HHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc-CCCeeeccHHHH
Confidence 6889999 99999999998 676664 788999999999999999999999999999999999998 567888999999
Q ss_pred hcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCC-CCccHHHHHHHHHHhccCccCCCcEEE
Q 004584 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNNVLL 370 (744)
Q Consensus 292 ~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~-~~~~~~~~~~~LL~~~d~~~~~~~v~v 370 (744)
.+.|.|.++..++++|+.|.... |+||||||+|.++++++.... ......+++++||..||++....+++|
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~~--------p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~v 196 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNA--------PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIV 196 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhcC--------CCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEE
Confidence 99999999999999999998764 679999999999988765322 234456889999999999988889999
Q ss_pred EEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHH
Q 004584 371 IGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAV 450 (744)
Q Consensus 371 I~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~ 450 (744)
|++||+++.+||+++|||||+..|+++.|+.++|.+||+.+++..+ +..+.++..+++.+.||+|+||.++|++|.
T Consensus 197 I~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~----~~~~~~l~~la~~t~G~sgadl~~l~~eA~ 272 (495)
T TIGR01241 197 IAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKK----LAPDVDLKAVARRTPGFSGADLANLLNEAA 272 (495)
T ss_pred EEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCC----CCcchhHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998765 456788999999999999999999999998
Q ss_pred HHHHHhccccCCCCCCCccccceeehhHHHHHHhhhcc
Q 004584 451 SFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVP 488 (744)
Q Consensus 451 ~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~P 488 (744)
..+.++. ...++.+||..|+..+..
T Consensus 273 ~~a~~~~-------------~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 273 LLAARKN-------------KTEITMNDIEEAIDRVIA 297 (495)
T ss_pred HHHHHcC-------------CCCCCHHHHHHHHHHHhc
Confidence 8876532 235899999999997754
No 37
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=2.2e-32 Score=321.38 Aligned_cols=437 Identities=18% Similarity=0.271 Sum_probs=285.4
Q ss_pred cccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhc---------CCCcEE
Q 004584 215 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---------GMEPKI 285 (744)
Q Consensus 215 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~---------~~~~~~ 285 (744)
.+++ +.|.++++++++ +.+.. +...+++|+||||||||++|+.+|+.+. +..++.
T Consensus 180 ~l~~--~igr~~ei~~~~-~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 180 KIDP--LIGREDELERTI-QVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred CCCc--ccCcHHHHHHHH-HHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 4566 889999998874 33322 2345799999999999999999999871 345667
Q ss_pred ecccchh--cccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCcc
Q 004584 286 VNGPEVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE 363 (744)
Q Consensus 286 v~~~~l~--~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~ 363 (744)
++...++ .+|.|+.++.++++|+++.... ++||||||+|.|++.+....++ ..+.+.|+..+.
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~--------~~ILfiDEih~l~~~g~~~~~~----~~~~~~L~~~l~--- 308 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEP--------NAILFIDEIHTIVGAGATSGGS----MDASNLLKPALS--- 308 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccC--------CeEEEEecHHHHhccCCCCCcc----HHHHHHHHHHHh---
Confidence 7877887 4899999999999999987643 5799999999998765432211 112233444433
Q ss_pred CCCcEEEEEEeCCCC-----ccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCC-CCCcccHHHHHHhcCCC
Q 004584 364 SLNNVLLIGMTNRKD-----MLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSF-LAPDVNLQELAARTKNY 437 (744)
Q Consensus 364 ~~~~v~vI~~tn~~~-----~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~-~~~~~~l~~la~~t~g~ 437 (744)
++.+.+||+||..+ .+|+++.| ||. .|+++.|+.+++.+||+.....+..... ...+..+..++..++.|
T Consensus 309 -~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ry 384 (731)
T TIGR02639 309 -SGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARY 384 (731)
T ss_pred -CCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcc
Confidence 47899999999744 46999999 997 7999999999999999987765432211 23555677888887776
Q ss_pred ChH-----HHHHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHHhhh--ccCCcccccccc------cccccc
Q 004584 438 SGA-----ELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI--VPAFGASTDDLE------RSRLNG 504 (744)
Q Consensus 438 sg~-----dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~--~Ps~~~~~~~l~------~~~~~g 504 (744)
-+. ....++++|+....-+.. ......|+.+|+..++..+ .|.......+.. ......
T Consensus 385 i~~r~~P~kai~lld~a~a~~~~~~~---------~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~ 455 (731)
T TIGR02639 385 INDRFLPDKAIDVIDEAGASFRLRPK---------AKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAK 455 (731)
T ss_pred cccccCCHHHHHHHHHhhhhhhcCcc---------cccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcc
Confidence 543 334566766643321110 0123468999999998876 343222211111 111111
Q ss_pred eeecCcchhhHHHHHHHHHHHHH---hcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccc--------cc
Q 004584 505 MVDCGDRHKHIYQRAMLLVEQVK---VSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM--------IG 573 (744)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~--------~g 573 (744)
+++ ++++++.+...+...+ ..+..|..++||+||||||||++|+++|..++.+++.+++++.. +|
T Consensus 456 v~G----Q~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig 531 (731)
T TIGR02639 456 IFG----QDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIG 531 (731)
T ss_pred eeC----cHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhc
Confidence 221 2233443333333322 22344666799999999999999999999999999999876642 22
Q ss_pred cchhh-HhhHHHHHHHHHhcCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCC---C-----CCCcEEEEEeC
Q 004584 574 LHEST-KCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP---P-----KGKKLLVIGTT 644 (744)
Q Consensus 574 ~~~~~-~~~~i~~if~~a~~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~---~-----~~~~v~vi~~t 644 (744)
...+. .......+.+..+..+.+||+|||||++. ..+++.|+..|+.-. . ..++.+||.||
T Consensus 532 ~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~----------~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Ts 601 (731)
T TIGR02639 532 APPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAH----------PDIYNILLQVMDYATLTDNNGRKADFRNVILIMTS 601 (731)
T ss_pred CCCCCcccchhhHHHHHHHhCCCeEEEEechhhcC----------HHHHHHHHHhhccCeeecCCCcccCCCCCEEEECC
Confidence 21110 00112234445566788999999999975 456777777776531 1 12357788898
Q ss_pred CCCCC-------------------------CCccccccccceEEEcCCCCHHHHHHHHHHcc--------------CCCH
Q 004584 645 SEVSF-------------------------LDSVGICDAFSVTYHVPTLKTDDAKKVLKQLN--------------VFAE 685 (744)
Q Consensus 645 n~~~~-------------------------l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~~--------------~~~~ 685 (744)
|.... +.| .+.+|++.++.|+|++.+++.+|++..- .+++
T Consensus 602 n~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~p-ef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~ 680 (731)
T TIGR02639 602 NAGASEMSKPPIGFGSENVESKSDKAIKKLFSP-EFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTD 680 (731)
T ss_pred CcchhhhhhccCCcchhhhHHHHHHHHHhhcCh-HHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCH
Confidence 86320 111 4558999999999999999999998620 2233
Q ss_pred HHHHHHHHhC-C-CCcHHHHHHHHHHH
Q 004584 686 EDVDSASEAL-N-DMPIKKLYMLIEMA 710 (744)
Q Consensus 686 ~~~~~~~~~~-~-~g~ir~l~~~l~~a 710 (744)
+.+..++... . ..++|.+...++.-
T Consensus 681 ~a~~~La~~~~~~~~GaR~l~r~i~~~ 707 (731)
T TIGR02639 681 DAKKYLAEKGYDEEFGARPLARVIQEE 707 (731)
T ss_pred HHHHHHHHhCCCcccCchHHHHHHHHH
Confidence 3333344332 2 56677776666543
No 38
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=4.1e-33 Score=317.36 Aligned_cols=245 Identities=36% Similarity=0.622 Sum_probs=216.6
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccch
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l 291 (744)
+.++|++ |+|+++.++++ ++.+. .+..|+.|..+|.++|+|+||+||||||||++|+++|.++ +.+++.++++++
T Consensus 178 ~~~~f~d--v~G~~~~k~~l-~eiv~-~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~-~~p~i~is~s~f 252 (638)
T CHL00176 178 TGITFRD--IAGIEEAKEEF-EEVVS-FLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-EVPFFSISGSEF 252 (638)
T ss_pred CCCCHHh--ccChHHHHHHH-HHHHH-HHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh-CCCeeeccHHHH
Confidence 5688999 99999999888 66654 4678889999999999999999999999999999999998 578888999999
Q ss_pred hcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCC-CCCccHHHHHHHHHHhccCccCCCcEEE
Q 004584 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTR-DGTGVHDSIVNQLLTKIDGVESLNNVLL 370 (744)
Q Consensus 292 ~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~-~~~~~~~~~~~~LL~~~d~~~~~~~v~v 370 (744)
...+.|.....++.+|..|.... ||||||||+|.++.+++... .+......++++||..||++....+++|
T Consensus 253 ~~~~~g~~~~~vr~lF~~A~~~~--------P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViV 324 (638)
T CHL00176 253 VEMFVGVGAARVRDLFKKAKENS--------PCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIV 324 (638)
T ss_pred HHHhhhhhHHHHHHHHHHHhcCC--------CcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeE
Confidence 99999998899999999998654 78999999999998776432 2234456789999999999988889999
Q ss_pred EEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHH
Q 004584 371 IGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAV 450 (744)
Q Consensus 371 I~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~ 450 (744)
|++||+++.+|++++|||||+++|.+++|+.++|.+||+.|++... +.++.++..+|+.+.||+|+||.++|++|+
T Consensus 325 IaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~----~~~d~~l~~lA~~t~G~sgaDL~~lvneAa 400 (638)
T CHL00176 325 IAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK----LSPDVSLELIARRTPGFSGADLANLLNEAA 400 (638)
T ss_pred EEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc----cchhHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998744 567889999999999999999999999999
Q ss_pred HHHHHhccccCCCCCCCccccceeehhHHHHHHhhh
Q 004584 451 SFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (744)
Q Consensus 451 ~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~ 486 (744)
..+.++. ...++++||..|+..+
T Consensus 401 l~a~r~~-------------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 401 ILTARRK-------------KATITMKEIDTAIDRV 423 (638)
T ss_pred HHHHHhC-------------CCCcCHHHHHHHHHHH
Confidence 8877643 2358999999999876
No 39
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-31 Score=307.57 Aligned_cols=435 Identities=18% Similarity=0.237 Sum_probs=276.3
Q ss_pred ccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhc---------CCCcEEe
Q 004584 216 LQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---------GMEPKIV 286 (744)
Q Consensus 216 ~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~---------~~~~~~v 286 (744)
++. +-|-++++++++ +.+.. +...++||+||||||||++|+.++..+- ...++.+
T Consensus 185 ~~~--liGR~~ei~~~i-~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l 248 (758)
T PRK11034 185 IDP--LIGREKELERAI-QVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_pred CCc--CcCCCHHHHHHH-HHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec
Confidence 455 889999988883 33322 2235689999999999999999998751 2233344
Q ss_pred cccchh--cccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccC
Q 004584 287 NGPEVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVES 364 (744)
Q Consensus 287 ~~~~l~--~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~ 364 (744)
+...++ .+|.|+.+.+++.+|..+.... ++||||||+|.|+..+....+ ...+.+.|...+ .
T Consensus 249 ~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~--------~~ILfIDEIh~L~g~g~~~~g----~~d~~nlLkp~L----~ 312 (758)
T PRK11034 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDT--------NSILFIDEIHTIIGAGAASGG----QVDAANLIKPLL----S 312 (758)
T ss_pred cHHHHhcccchhhhHHHHHHHHHHHHHhcC--------CCEEEeccHHHHhccCCCCCc----HHHHHHHHHHHH----h
Confidence 445555 4788999999999999887543 469999999999876543211 112222222222 3
Q ss_pred CCcEEEEEEeCCCC-----ccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCC-CCcccHHHHHHhcCCC-
Q 004584 365 LNNVLLIGMTNRKD-----MLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFL-APDVNLQELAARTKNY- 437 (744)
Q Consensus 365 ~~~v~vI~~tn~~~-----~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~-~~~~~l~~la~~t~g~- 437 (744)
++.+.+||+|+.++ ..|++|.| ||. .|.++.|+.+++.+||+.+..++.....+ ..+..+...+..+..|
T Consensus 313 ~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi 389 (758)
T PRK11034 313 SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYI 389 (758)
T ss_pred CCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccc
Confidence 47899999999875 36999999 996 79999999999999999887776643222 2333455555555443
Q ss_pred ----ChHHHHHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHHhhh--ccCCccccccc------ccccccce
Q 004584 438 ----SGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI--VPAFGASTDDL------ERSRLNGM 505 (744)
Q Consensus 438 ----sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~--~Ps~~~~~~~l------~~~~~~g~ 505 (744)
-+.....++.+|+.... .... ......++.+|+...+..+ .|.......+. +......+
T Consensus 390 ~~r~lPdKaidlldea~a~~~--~~~~-------~~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~V 460 (758)
T PRK11034 390 NDRHLPDKAIDVIDEAGARAR--LMPV-------SKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLV 460 (758)
T ss_pred cCccChHHHHHHHHHHHHhhc--cCcc-------cccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceE
Confidence 34467778888875432 1110 0112357888888887765 33332211111 00001111
Q ss_pred eecCcchhhHHHHHHHHHHHHHh---cCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEccccc--------cccc
Q 004584 506 VDCGDRHKHIYQRAMLLVEQVKV---SKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES--------MIGL 574 (744)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~--------~~g~ 574 (744)
++ .+++++.+...+...+. ....|..++||+||||||||.+|+++|...+.+|+.+++.+. ++|.
T Consensus 461 iG----Q~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~ 536 (758)
T PRK11034 461 FG----QDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGA 536 (758)
T ss_pred eC----cHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCC
Confidence 11 23444444444433322 234566789999999999999999999999999999987664 2332
Q ss_pred chhhHh-hHHHHHHHHHhcCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCC---C-----CCCcEEEEEeCC
Q 004584 575 HESTKC-AQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP---P-----KGKKLLVIGTTS 645 (744)
Q Consensus 575 ~~~~~~-~~i~~if~~a~~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~---~-----~~~~v~vi~~tn 645 (744)
..+... ..-..+.+..++.+.+||||||||++. ..+++.|+..|+.-. . .-++++||.|||
T Consensus 537 ~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~----------~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN 606 (758)
T PRK11034 537 PPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH----------PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_pred CCCcccccccchHHHHHHhCCCcEEEeccHhhhh----------HHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCC
Confidence 211000 001123333455678999999999984 557888888887421 1 124678899998
Q ss_pred CCC-------------------------CCCccccccccceEEEcCCCCHHHHHHHHHHc-------------c-CCCHH
Q 004584 646 EVS-------------------------FLDSVGICDAFSVTYHVPTLKTDDAKKVLKQL-------------N-VFAEE 686 (744)
Q Consensus 646 ~~~-------------------------~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~-------------~-~~~~~ 686 (744)
.-. .+.| .+.+|++.++.|++++.+++.+|+... . .++++
T Consensus 607 ~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~p-efl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~ 685 (758)
T PRK11034 607 AGVRETERKSIGLIHQDNSTDAMEEIKKIFTP-EFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQE 685 (758)
T ss_pred cCHHHHhhcccCcccchhhHHHHHHHHHhcCH-HHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHH
Confidence 320 0112 455899999999999999999999852 1 23343
Q ss_pred HHHHHHHhCC--CCcHHHHHHHHHH
Q 004584 687 DVDSASEALN--DMPIKKLYMLIEM 709 (744)
Q Consensus 687 ~~~~~~~~~~--~g~ir~l~~~l~~ 709 (744)
-+..++.... ..++|.+..+++.
T Consensus 686 ~~~~l~~~~~~~~~GAR~l~r~i~~ 710 (758)
T PRK11034 686 ARDWLAEKGYDRAMGARPMARVIQD 710 (758)
T ss_pred HHHHHHHhCCCCCCCCchHHHHHHH
Confidence 3444443322 4566666666554
No 40
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.98 E-value=6.6e-30 Score=282.58 Aligned_cols=369 Identities=14% Similarity=0.146 Sum_probs=254.7
Q ss_pred eeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHH
Q 004584 323 LHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDEN 402 (744)
Q Consensus 323 p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~ 402 (744)
|.|+++.|+|.++.. ..+.+.+ ..+..... .....+|+.+.+ -.+++.|.+ +-..+++|+|+.+
T Consensus 82 ~~~~vl~d~h~~~~~-------~~~~r~l-~~l~~~~~---~~~~~~i~~~~~--~~~p~el~~---~~~~~~~~lP~~~ 145 (489)
T CHL00195 82 PALFLLKDFNRFLND-------ISISRKL-RNLSRILK---TQPKTIIIIASE--LNIPKELKD---LITVLEFPLPTES 145 (489)
T ss_pred CcEEEEecchhhhcc-------hHHHHHH-HHHHHHHH---hCCCEEEEEcCC--CCCCHHHHh---ceeEEeecCcCHH
Confidence 679999999999821 1222333 22332222 233444444432 346777765 4457899999999
Q ss_pred HHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHH
Q 004584 403 GRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHA 482 (744)
Q Consensus 403 ~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~a 482 (744)
++.++++........ ..++.+++.+++.+.|++-.+++.++..+.. +. ..++.++....
T Consensus 146 ei~~~l~~~~~~~~~---~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~----~~--------------~~~~~~~~~~i 204 (489)
T CHL00195 146 EIKKELTRLIKSLNI---KIDSELLENLTRACQGLSLERIRRVLSKIIA----TY--------------KTIDENSIPLI 204 (489)
T ss_pred HHHHHHHHHHHhcCC---CCCHHHHHHHHHHhCCCCHHHHHHHHHHHHH----Hc--------------CCCChhhHHHH
Confidence 999999877654321 2456678999999999999999988877542 11 11233333322
Q ss_pred HhhhccCCcccccccccc-cccceeecCcchhhHHHHHHHHH----HHHHhcCCCCceeeeeecCCCCChhHHHHHHHhh
Q 004584 483 LYEIVPAFGASTDDLERS-RLNGMVDCGDRHKHIYQRAMLLV----EQVKVSKGSPLVTCLLEGPSGSGKTALAATAGID 557 (744)
Q Consensus 483 l~~~~Ps~~~~~~~l~~~-~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~ 557 (744)
+++.+...... ..++.. ....+.++++ ++.+++++.... ......+..+++++||+||||||||++|+++|.+
T Consensus 205 ~~~k~q~~~~~-~~le~~~~~~~~~dvgG-l~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e 282 (489)
T CHL00195 205 LEEKKQIISQT-EILEFYSVNEKISDIGG-LDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND 282 (489)
T ss_pred HHHHHHHHhhh-ccccccCCCCCHHHhcC-HHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 22211111100 001111 0112334443 455555555433 3344567788999999999999999999999999
Q ss_pred cCCCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhhccCCC--CcchhHHHHHHHHHHhccCCCCC
Q 004584 558 SDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPI--GPRFSNIISQTMLVLLKRLPPKG 635 (744)
Q Consensus 558 ~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~~~--g~~~~~~~~~~Ll~~l~~~~~~~ 635 (744)
++.+|+.++... +.+.+.++...+++++|+.|+...||||||||||.++..+.. ....++.++..++..|+. ..
T Consensus 283 ~~~~~~~l~~~~-l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~---~~ 358 (489)
T CHL00195 283 WQLPLLRLDVGK-LFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE---KK 358 (489)
T ss_pred hCCCEEEEEhHH-hcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc---CC
Confidence 999999997765 445556666778999999999999999999999999865321 223466777777777764 34
Q ss_pred CcEEEEEeCCCCCCCCccccc-cccceEEEcCCCCHHHHHHHHHHcc------CCCHHHHHHHHHhCCCCcHHHHHHHHH
Q 004584 636 KKLLVIGTTSEVSFLDSVGIC-DAFSVTYHVPTLKTDDAKKVLKQLN------VFAEEDVDSASEALNDMPIKKLYMLIE 708 (744)
Q Consensus 636 ~~v~vi~~tn~~~~l~~~~l~-~rf~~~i~~p~~~~~~~~~Il~~~~------~~~~~~~~~~~~~~~~g~ir~l~~~l~ 708 (744)
..++||||||+++.+|++.++ +||+..++|+.|+.+++.+|++.+- ...+.++..++....+.+.+++..++.
T Consensus 359 ~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~ 438 (489)
T CHL00195 359 SPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSII 438 (489)
T ss_pred CceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHH
Confidence 579999999999999998776 8999999999999999999999641 123556777777777888888888888
Q ss_pred HHHhcccCCcccccccCCCCcchhhHHHHHHHHh
Q 004584 709 MAAQGEQGGAAEAIYSGREKIKISHFYDCLQDMV 742 (744)
Q Consensus 709 ~a~~~a~~~~~~a~~~g~~~It~e~~~~al~~~~ 742 (744)
.|...+.. ....++.+||.+|+.++.
T Consensus 439 eA~~~A~~--------~~~~lt~~dl~~a~~~~~ 464 (489)
T CHL00195 439 EAMYIAFY--------EKREFTTDDILLALKQFI 464 (489)
T ss_pred HHHHHHHH--------cCCCcCHHHHHHHHHhcC
Confidence 87776543 234599999999998765
No 41
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.98 E-value=7.8e-32 Score=319.80 Aligned_cols=212 Identities=16% Similarity=0.165 Sum_probs=177.3
Q ss_pred hhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhccc----------cc---------------
Q 004584 243 PHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKF----------VG--------------- 297 (744)
Q Consensus 243 ~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~----------~g--------------- 297 (744)
.....++|+++|+||||+||||||||++|+++|.+. +.+++.++++++++++ .|
T Consensus 1619 kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es-~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1619 KPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNS-YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred cCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhc-CCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 446689999999999999999999999999999997 6888999999998754 12
Q ss_pred ----------------chH--HHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhc
Q 004584 298 ----------------ETE--KNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKI 359 (744)
Q Consensus 298 ----------------~~~--~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~ 359 (744)
..+ ..++.+|+.|+..+ ||||||||||+++.+.. ....+++|+..|
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~S--------PCIIFIDEIDaL~~~ds--------~~ltL~qLLneL 1761 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAMS--------PCIIWIPNIHDLNVNES--------NYLSLGLLVNSL 1761 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCC--------CeEEEEEchhhcCCCcc--------ceehHHHHHHHh
Confidence 222 34899999999875 88999999999986521 123488999999
Q ss_pred cCcc---CCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHH--HhcccccCCCCC-cccHHHHHHh
Q 004584 360 DGVE---SLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIH--TNKMKENSFLAP-DVNLQELAAR 433 (744)
Q Consensus 360 d~~~---~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~--~~~~~~~~~~~~-~~~l~~la~~ 433 (744)
|+.. ...+|+||||||+|+.|||||+||||||++|+++.|+..+|.+++..+ ++++. +.. .++++.+|+.
T Consensus 1762 Dg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~----L~~~~vdl~~LA~~ 1837 (2281)
T CHL00206 1762 SRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFH----LEKKMFHTNGFGSI 1837 (2281)
T ss_pred ccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCC----CCcccccHHHHHHh
Confidence 9863 456899999999999999999999999999999999999999998864 34433 332 3579999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHHhhhcc
Q 004584 434 TKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVP 488 (744)
Q Consensus 434 t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~P 488 (744)
|.||+||||.++|++|+..|+.+. ...|+.+++..|+.++..
T Consensus 1838 T~GfSGADLanLvNEAaliAirq~-------------ks~Id~~~I~~Al~Rq~~ 1879 (2281)
T CHL00206 1838 TMGSNARDLVALTNEALSISITQK-------------KSIIDTNTIRSALHRQTW 1879 (2281)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcC-------------CCccCHHHHHHHHHHHHh
Confidence 999999999999999999999864 235889999999987753
No 42
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.97 E-value=4e-31 Score=305.10 Aligned_cols=247 Identities=35% Similarity=0.568 Sum_probs=216.7
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchh
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL 292 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~ 292 (744)
...|++ ++|++..++++ .+.+.. +..|..+..++.+.++|+||+||||||||++++++++++ +.+++.++++++.
T Consensus 148 ~~~~~d--i~g~~~~~~~l-~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~-~~~f~~is~~~~~ 222 (644)
T PRK10733 148 KTTFAD--VAGCDEAKEEV-AELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA-KVPFFTISGSDFV 222 (644)
T ss_pred hCcHHH--HcCHHHHHHHH-HHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc-CCCEEEEehHHhH
Confidence 345777 99999999888 666655 456777888999999999999999999999999999998 5678889999999
Q ss_pred cccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCC-CCCccHHHHHHHHHHhccCccCCCcEEEE
Q 004584 293 SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTR-DGTGVHDSIVNQLLTKIDGVESLNNVLLI 371 (744)
Q Consensus 293 ~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~-~~~~~~~~~~~~LL~~~d~~~~~~~v~vI 371 (744)
..|.|.....++++|..+.... ||||||||+|.++.+++... ++.....+++++||..||++....+++||
T Consensus 223 ~~~~g~~~~~~~~~f~~a~~~~--------P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivI 294 (644)
T PRK10733 223 EMFVGVGASRVRDMFEQAKKAA--------PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVI 294 (644)
T ss_pred HhhhcccHHHHHHHHHHHHhcC--------CcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEE
Confidence 9999999999999999987654 78999999999998876532 22344567999999999999988899999
Q ss_pred EEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHHH
Q 004584 372 GMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVS 451 (744)
Q Consensus 372 ~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~ 451 (744)
++||+|+.||++++|||||+++|++++||.++|.+||+.|+++.+ +..++++..+++.|.||+|+||.++|++|+.
T Consensus 295 aaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~----l~~~~d~~~la~~t~G~sgadl~~l~~eAa~ 370 (644)
T PRK10733 295 AATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP----LAPDIDAAIIARGTPGFSGADLANLVNEAAL 370 (644)
T ss_pred EecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCC----CCCcCCHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998876 6678899999999999999999999999999
Q ss_pred HHHHhccccCCCCCCCccccceeehhHHHHHHhhhccC
Q 004584 452 FALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPA 489 (744)
Q Consensus 452 ~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~Ps 489 (744)
.|.++. ...++.+||..|+..+.+.
T Consensus 371 ~a~r~~-------------~~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 371 FAARGN-------------KRVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred HHHHcC-------------CCcccHHHHHHHHHHHhcc
Confidence 988642 3468999999999877553
No 43
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=2.9e-31 Score=273.85 Aligned_cols=196 Identities=21% Similarity=0.283 Sum_probs=161.9
Q ss_pred hHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEE
Q 004584 247 SKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVI 326 (744)
Q Consensus 247 ~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il 326 (744)
..+|+++|++++||||||||||++|+++|++++ .+++.++++++.++|+|++++++|++|..|...... ...||||
T Consensus 141 ~~~~ik~PlgllL~GPPGcGKTllAraiA~elg-~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~---~~aPcVL 216 (413)
T PLN00020 141 ALPNIKVPLILGIWGGKGQGKSFQCELVFKKMG-IEPIVMSAGELESENAGEPGKLIRQRYREAADIIKK---KGKMSCL 216 (413)
T ss_pred hccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcC-CCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhc---cCCCeEE
Confidence 346899999999999999999999999999994 677889999999999999999999999999864311 1258999
Q ss_pred EEcCcchhcccCCCCCCCCccHHHHH-HHHHHhccCc------------cCCCcEEEEEEeCCCCccchhhcCCCccceE
Q 004584 327 IFDEIDAICKSRGSTRDGTGVHDSIV-NQLLTKIDGV------------ESLNNVLLIGMTNRKDMLDEALLRPGRLEVQ 393 (744)
Q Consensus 327 ~iDEid~l~~~~~~~~~~~~~~~~~~-~~LL~~~d~~------------~~~~~v~vI~~tn~~~~id~al~r~gRf~~~ 393 (744)
||||||+++++++..+ ..+..+++ .+||+.||+. +...+|+||+|||+|+.|||+|+|||||+..
T Consensus 217 FIDEIDA~~g~r~~~~--~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~ 294 (413)
T PLN00020 217 FINDLDAGAGRFGTTQ--YTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKF 294 (413)
T ss_pred EEehhhhcCCCCCCCC--cchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCce
Confidence 9999999999987432 24455565 7999998863 3456799999999999999999999999986
Q ss_pred EEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCC----CChHHHHHHHHHHHHHHHH
Q 004584 394 VEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKN----YSGAELEGVAKSAVSFALN 455 (744)
Q Consensus 394 i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g----~sg~dl~~l~~~A~~~a~~ 455 (744)
+ ..|+.++|.+||+.++++.. + +..++..|+..+.| |.||--..+..++...-+.
T Consensus 295 i--~lPd~e~R~eIL~~~~r~~~----l-~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~ 353 (413)
T PLN00020 295 Y--WAPTREDRIGVVHGIFRDDG----V-SREDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIA 353 (413)
T ss_pred e--CCCCHHHHHHHHHHHhccCC----C-CHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHH
Confidence 4 68999999999999998865 3 35778888888866 5676666666666655544
No 44
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.2e-31 Score=282.23 Aligned_cols=261 Identities=30% Similarity=0.420 Sum_probs=221.9
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccch
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l 291 (744)
+++.|++ |+|++...+.+ .+++..|+..|.+|..+- .+++|+||.||||||||+|++++|.+.. ..+..++++.+
T Consensus 148 ~~v~~~d--i~gl~~~k~~l-~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~-atff~iSassL 222 (428)
T KOG0740|consen 148 RNVGWDD--IAGLEDAKQSL-KEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESG-ATFFNISASSL 222 (428)
T ss_pred CcccccC--CcchhhHHHHh-hhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhc-ceEeeccHHHh
Confidence 5678888 99999988877 889999999999988764 5678999999999999999999999984 55677899999
Q ss_pred hcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccC--CCcEE
Q 004584 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVES--LNNVL 369 (744)
Q Consensus 292 ~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~--~~~v~ 369 (744)
.++|+|+++..++.+|.-|+..+ |+|+||||+|+++.+|... ..+...++..++|-++++... .++|+
T Consensus 223 tsK~~Ge~eK~vralf~vAr~~q--------PsvifidEidslls~Rs~~--e~e~srr~ktefLiq~~~~~s~~~drvl 292 (428)
T KOG0740|consen 223 TSKYVGESEKLVRALFKVARSLQ--------PSVIFIDEIDSLLSKRSDN--EHESSRRLKTEFLLQFDGKNSAPDDRVL 292 (428)
T ss_pred hhhccChHHHHHHHHHHHHHhcC--------CeEEEechhHHHHhhcCCc--ccccchhhhhHHHhhhccccCCCCCeEE
Confidence 99999999999999999999987 5699999999999988433 346677899999999888643 34799
Q ss_pred EEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHH
Q 004584 370 LIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSA 449 (744)
Q Consensus 370 vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A 449 (744)
||||||+|+.+|.+++| ||...++||+||.+.|..+|+..+++.+ ....+.++..+++.|+||+|.||.++|++|
T Consensus 293 vigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~---~~l~~~d~~~l~~~Tegysgsdi~~l~kea 367 (428)
T KOG0740|consen 293 VIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQP---NGLSDLDISLLAKVTEGYSGSDITALCKEA 367 (428)
T ss_pred EEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCC---CCccHHHHHHHHHHhcCcccccHHHHHHHh
Confidence 99999999999999999 9999999999999999999999988763 245677899999999999999999999999
Q ss_pred HHHHHHhccccCCCCCCCccccceeehhHHHHHHhhhccCCcc
Q 004584 450 VSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPAFGA 492 (744)
Q Consensus 450 ~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~Ps~~~ 492 (744)
++.-++......++..........++..||..+++.++|+...
T Consensus 368 ~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~s~ 410 (428)
T KOG0740|consen 368 AMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPSVSL 410 (428)
T ss_pred hcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhccccCc
Confidence 9877665433212222234556778999999999999998643
No 45
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.97 E-value=5.4e-28 Score=287.41 Aligned_cols=449 Identities=18% Similarity=0.220 Sum_probs=273.4
Q ss_pred cccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhc---------CCCcEE
Q 004584 215 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---------GMEPKI 285 (744)
Q Consensus 215 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~---------~~~~~~ 285 (744)
.+++ +.|.+++++++ .+.+. .+...+++|+||||||||++|+.+|..+. +..++.
T Consensus 177 ~~~~--~igr~~ei~~~-~~~L~-------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~ 240 (821)
T CHL00095 177 NLDP--VIGREKEIERV-IQILG-------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT 240 (821)
T ss_pred CCCC--CCCcHHHHHHH-HHHHc-------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 3556 99999999988 34332 23455899999999999999999999873 346777
Q ss_pred ecccchh--cccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCcc
Q 004584 286 VNGPEVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE 363 (744)
Q Consensus 286 v~~~~l~--~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~ 363 (744)
++...++ .+|.|+.+++++++|+.+.... ++||||||+|.|+..++... + . .+.+.|...+
T Consensus 241 l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~--------~~ILfiDEih~l~~~g~~~g-~-~---~~a~lLkp~l---- 303 (821)
T CHL00095 241 LDIGLLLAGTKYRGEFEERLKRIFDEIQENN--------NIILVIDEVHTLIGAGAAEG-A-I---DAANILKPAL---- 303 (821)
T ss_pred eeHHHHhccCCCccHHHHHHHHHHHHHHhcC--------CeEEEEecHHHHhcCCCCCC-c-c---cHHHHhHHHH----
Confidence 8888777 4889999999999999987543 57999999999987654321 1 1 1222233232
Q ss_pred CCCcEEEEEEeCCCC-----ccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCC-CCcccHHHHHHhcCCC
Q 004584 364 SLNNVLLIGMTNRKD-----MLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFL-APDVNLQELAARTKNY 437 (744)
Q Consensus 364 ~~~~v~vI~~tn~~~-----~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~-~~~~~l~~la~~t~g~ 437 (744)
.++.+.+||+|+..+ ..|+++.+ ||. .|.++.|+.++...|++.....+.....+ .++..+..++..+++|
T Consensus 304 ~rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~y 380 (821)
T CHL00095 304 ARGELQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQY 380 (821)
T ss_pred hCCCcEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Confidence 347899999999865 36899999 997 57999999999999998765443221111 3445577888888777
Q ss_pred ChH-----HHHHHHHHHHHHHHHhcccc------------------------CCCCC-----------------------
Q 004584 438 SGA-----ELEGVAKSAVSFALNRQLSM------------------------DDLTK----------------------- 465 (744)
Q Consensus 438 sg~-----dl~~l~~~A~~~a~~r~~~~------------------------~~~~~----------------------- 465 (744)
.+. ....++.+|+.......... .+...
T Consensus 381 i~~r~lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (821)
T CHL00095 381 IADRFLPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKK 460 (821)
T ss_pred CccccCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 542 23345555554321110000 00000
Q ss_pred ---CCccccceeehhHHHHHHhhh--ccCCcccccccccc-cc-cceeecCcchhhHHHHHHHHHHHHH---hcCCCCce
Q 004584 466 ---PVDEESIKVTMDDFLHALYEI--VPAFGASTDDLERS-RL-NGMVDCGDRHKHIYQRAMLLVEQVK---VSKGSPLV 535 (744)
Q Consensus 466 ---~~~~~~~~it~~df~~al~~~--~Ps~~~~~~~l~~~-~~-~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 535 (744)
........|+.+|+...+... .|.......+.+.. .+ ..+...--.+++++..+...+...+ ..+..|..
T Consensus 461 ~~~~~~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~ 540 (821)
T CHL00095 461 TEEEKRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIA 540 (821)
T ss_pred hhhcccccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCce
Confidence 000011346666666666654 23322221111100 00 0000000012333433333332222 23445567
Q ss_pred eeeeecCCCCChhHHHHHHHhhc---CCCEEEEcccccc--------cccchhh-HhhHHHHHHHHHhcCCCeEEEEecc
Q 004584 536 TCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESM--------IGLHEST-KCAQIVKVFEDAYKSPLSIIILDDI 603 (744)
Q Consensus 536 ~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~~--------~g~~~~~-~~~~i~~if~~a~~~~~~il~iDEi 603 (744)
++||+||||||||++|+++|... ..++++++.++.. +|...+. .......+.+..++.+.+||+|||+
T Consensus 541 ~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDei 620 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEI 620 (821)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECCh
Confidence 79999999999999999999875 4578888766531 2211100 0011224556667788899999999
Q ss_pred chhhccCCCCcchhHHHHHHHHHHhccCC---C-----CCCcEEEEEeCCCCCC--------C-------C--c------
Q 004584 604 ERLLEYVPIGPRFSNIISQTMLVLLKRLP---P-----KGKKLLVIGTTSEVSF--------L-------D--S------ 652 (744)
Q Consensus 604 d~l~~~~~~g~~~~~~~~~~Ll~~l~~~~---~-----~~~~v~vi~~tn~~~~--------l-------~--~------ 652 (744)
|++. ..+++.|+..|+.-. . ..++.+||.|||.... + + .
T Consensus 621 eka~----------~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~ 690 (821)
T CHL00095 621 EKAH----------PDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRL 690 (821)
T ss_pred hhCC----------HHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHH
Confidence 9974 456777777776521 1 1246788889885321 0 0 0
Q ss_pred -------------cccccccceEEEcCCCCHHHHHHHHHHc-------------c-CCCHHHHHHHHHhC-C-CCcHHHH
Q 004584 653 -------------VGICDAFSVTYHVPTLKTDDAKKVLKQL-------------N-VFAEEDVDSASEAL-N-DMPIKKL 703 (744)
Q Consensus 653 -------------~~l~~rf~~~i~~p~~~~~~~~~Il~~~-------------~-~~~~~~~~~~~~~~-~-~g~ir~l 703 (744)
..+.+|++.++.|.|++.+++.+|++.. . .++++....++... . ..++|.+
T Consensus 691 ~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l 770 (821)
T CHL00095 691 SNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPL 770 (821)
T ss_pred HHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhH
Confidence 1245899999999999999999998862 1 23333333344432 2 5566766
Q ss_pred HHHHHH
Q 004584 704 YMLIEM 709 (744)
Q Consensus 704 ~~~l~~ 709 (744)
..+++.
T Consensus 771 ~r~i~~ 776 (821)
T CHL00095 771 RRAIMR 776 (821)
T ss_pred HHHHHH
Confidence 666544
No 46
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.96 E-value=9.1e-28 Score=283.66 Aligned_cols=190 Identities=17% Similarity=0.281 Sum_probs=135.9
Q ss_pred cccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcC---------CCcEE
Q 004584 215 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG---------MEPKI 285 (744)
Q Consensus 215 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~---------~~~~~ 285 (744)
.+++ +.|.++++++++. .+.. +...+++|+||||||||++|+.+|+.+.. ..++.
T Consensus 185 ~ld~--~iGr~~ei~~~i~-~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 185 KIDP--VLGRDDEIRQMID-ILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred CCCc--ccCCHHHHHHHHH-HHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 4566 8999998777732 2211 22347899999999999999999998731 22444
Q ss_pred ecccchh--cccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCcc
Q 004584 286 VNGPEVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE 363 (744)
Q Consensus 286 v~~~~l~--~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~ 363 (744)
++...+. .+|.|+.++.++++|+++.... .++||||||+|.+++.++... . . ..-+.|+..+
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~-------~~~ILfIDEih~l~~~g~~~~-~-~---d~~n~Lkp~l---- 312 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASP-------QPIILFIDEAHTLIGAGGQAG-Q-G---DAANLLKPAL---- 312 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcC-------CCeEEEEeChHHhccCCCccc-c-c---cHHHHhhHHh----
Confidence 5555555 3688999999999999986532 257999999999987654321 1 1 1223333333
Q ss_pred CCCcEEEEEEeCCCCc-----cchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccC-CCCCcccHHHHHHhcCCC
Q 004584 364 SLNNVLLIGMTNRKDM-----LDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENS-FLAPDVNLQELAARTKNY 437 (744)
Q Consensus 364 ~~~~v~vI~~tn~~~~-----id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~-~~~~~~~l~~la~~t~g~ 437 (744)
.++.+.+||+|+..+. +|++|.| ||. .|.++.|+.+++.+||+.+.+.+.... ....+..+..++..+++|
T Consensus 313 ~~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 313 ARGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred hCCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 3578999999997543 7999999 996 799999999999999987776654321 223556688888888877
Q ss_pred Ch
Q 004584 438 SG 439 (744)
Q Consensus 438 sg 439 (744)
..
T Consensus 390 i~ 391 (852)
T TIGR03345 390 IP 391 (852)
T ss_pred cc
Confidence 53
No 47
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.96 E-value=6.1e-27 Score=279.13 Aligned_cols=450 Identities=17% Similarity=0.213 Sum_probs=269.5
Q ss_pred cccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhc---------CCCcEE
Q 004584 215 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---------GMEPKI 285 (744)
Q Consensus 215 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~---------~~~~~~ 285 (744)
.+++ +.|.++++++++ +.+.. +...+++|+||||||||++++.+|..+. +..++.
T Consensus 171 ~~~~--~igr~~ei~~~~-~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 171 KLDP--VIGRDEEIRRTI-QVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred CCCc--CCCcHHHHHHHH-HHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 4555 899999888773 33222 2234689999999999999999999872 344566
Q ss_pred ecccchh--cccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCcc
Q 004584 286 VNGPEVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE 363 (744)
Q Consensus 286 v~~~~l~--~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~ 363 (744)
++...++ .+|.|+.+..++.+|+.+.... .++||||||+|.|++.+.... + ....+.|... -
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~-------~~~ILfIDEih~l~~~g~~~~-~----~d~~~~Lk~~----l 298 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSE-------GQIILFIDELHTLVGAGKAEG-A----MDAGNMLKPA----L 298 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcC-------CCeEEEeccHHHhhcCCCCcc-h----hHHHHHhchh----h
Confidence 6666665 4788999999999999886532 267999999999986543221 1 1223333332 3
Q ss_pred CCCcEEEEEEeCCCCc-----cchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCC-CCcccHHHHHHhcCCC
Q 004584 364 SLNNVLLIGMTNRKDM-----LDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFL-APDVNLQELAARTKNY 437 (744)
Q Consensus 364 ~~~~v~vI~~tn~~~~-----id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~-~~~~~l~~la~~t~g~ 437 (744)
.++.+.+||+|+..+. +|+++.| ||. .|.++.|+.+++..||+.+..++.....+ ..+..+...+..+++|
T Consensus 299 ~~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~y 375 (852)
T TIGR03346 299 ARGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRY 375 (852)
T ss_pred hcCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccc
Confidence 4578999999998753 6999999 997 58999999999999999887776643332 2445677777777776
Q ss_pred ChH-----HHHHHHHHHHHHHHHhccccC-C-----------------CCCCCc--------------------------
Q 004584 438 SGA-----ELEGVAKSAVSFALNRQLSMD-D-----------------LTKPVD-------------------------- 468 (744)
Q Consensus 438 sg~-----dl~~l~~~A~~~a~~r~~~~~-~-----------------~~~~~~-------------------------- 468 (744)
... --..++++|+.....+..... . ......
T Consensus 376 i~~r~lPdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (852)
T TIGR03346 376 ITDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEE 455 (852)
T ss_pred ccccCCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 532 233455555533211100000 0 000000
Q ss_pred -------------------------------------------------------------------cccceeehhHHHH
Q 004584 469 -------------------------------------------------------------------EESIKVTMDDFLH 481 (744)
Q Consensus 469 -------------------------------------------------------------------~~~~~it~~df~~ 481 (744)
.....|+.+|+..
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~~ 535 (852)
T TIGR03346 456 QWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAE 535 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHHH
Confidence 0001122222222
Q ss_pred HHhhh--ccCCcccccccc------cccccceeecCcchhhHHHHHHHHHHHHHh---cCCCCceeeeeecCCCCChhHH
Q 004584 482 ALYEI--VPAFGASTDDLE------RSRLNGMVDCGDRHKHIYQRAMLLVEQVKV---SKGSPLVTCLLEGPSGSGKTAL 550 (744)
Q Consensus 482 al~~~--~Ps~~~~~~~l~------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Ll~GppG~GKT~l 550 (744)
.+... .|.......+.+ +.....+++ ...++..+...+..... .+..|...+||+||||||||++
T Consensus 536 v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~G----Q~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~l 611 (852)
T TIGR03346 536 VVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVG----QDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTEL 611 (852)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHhhcccCC----ChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHH
Confidence 22221 111100000000 000000111 11222222222222221 2334567899999999999999
Q ss_pred HHHHHhhc---CCCEEEEcccccc--------cccchhh-HhhHHHHHHHHHhcCCCeEEEEeccchhhccCCCCcchhH
Q 004584 551 AATAGIDS---DFPFVKIISAESM--------IGLHEST-KCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSN 618 (744)
Q Consensus 551 a~~~a~~~---~~~~i~v~~~~~~--------~g~~~~~-~~~~i~~if~~a~~~~~~il~iDEid~l~~~~~~g~~~~~ 618 (744)
|+++|..+ +.+++.+++++.. +|...+- ....-..+....++.+.+||||||||++. .
T Consensus 612 A~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~----------~ 681 (852)
T TIGR03346 612 AKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAH----------P 681 (852)
T ss_pred HHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCC----------H
Confidence 99999765 5678888776531 2211100 00001233444556778999999999974 5
Q ss_pred HHHHHHHHHhccCC---C-----CCCcEEEEEeCCCCCC-C-C----------------------ccccccccceEEEcC
Q 004584 619 IISQTMLVLLKRLP---P-----KGKKLLVIGTTSEVSF-L-D----------------------SVGICDAFSVTYHVP 666 (744)
Q Consensus 619 ~~~~~Ll~~l~~~~---~-----~~~~v~vi~~tn~~~~-l-~----------------------~~~l~~rf~~~i~~p 666 (744)
.+++.|+..|+.-. . .-++.+||+|||.... + + ...+..|++.++.|.
T Consensus 682 ~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~ 761 (852)
T TIGR03346 682 DVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFH 761 (852)
T ss_pred HHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecC
Confidence 56777777775421 1 1245778899987321 0 0 013458999999999
Q ss_pred CCCHHHHHHHHHHc-------------c-CCCHHHHHHHHHhCC--CCcHHHHHHHHHHHHhc
Q 004584 667 TLKTDDAKKVLKQL-------------N-VFAEEDVDSASEALN--DMPIKKLYMLIEMAAQG 713 (744)
Q Consensus 667 ~~~~~~~~~Il~~~-------------~-~~~~~~~~~~~~~~~--~g~ir~l~~~l~~a~~~ 713 (744)
|++.+++.+|+... . .++++.+..++.... .+++|.+..+++.....
T Consensus 762 PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~ 824 (852)
T TIGR03346 762 PLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIEN 824 (852)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHH
Confidence 99999999998862 0 234444455555534 79999999988876543
No 48
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.95 E-value=5.1e-26 Score=269.83 Aligned_cols=189 Identities=19% Similarity=0.302 Sum_probs=132.9
Q ss_pred cccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhc---------CCCcEE
Q 004584 215 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---------GMEPKI 285 (744)
Q Consensus 215 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~---------~~~~~~ 285 (744)
.+++ +.|.++++++++ +.+..+ ...+++|+||||||||++|+.+|..+. +..++.
T Consensus 176 ~l~~--vigr~~ei~~~i-~iL~r~-------------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 176 KLDP--VIGRDEEIRRTI-QVLQRR-------------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred CCCc--CCCCHHHHHHHH-HHHhcC-------------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 4566 999999877773 222222 234689999999999999999999872 345566
Q ss_pred ecccchh--cccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCcc
Q 004584 286 VNGPEVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE 363 (744)
Q Consensus 286 v~~~~l~--~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~ 363 (744)
++...++ .+|.|+.++.++++|..+.... .++||||||+|.|++.+.+. ++ .. ..+.|... -
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~-------~~~ILfIDEih~l~~~~~~~-~~-~d---~~~~lkp~----l 303 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQE-------GNVILFIDELHTMVGAGKAD-GA-MD---AGNMLKPA----L 303 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcC-------CCeEEEEecHHHhccCCCCc-cc-hh---HHHHhcch----h
Confidence 6666666 4688999999999999865432 26799999999998665432 11 11 22223222 2
Q ss_pred CCCcEEEEEEeCCCCc-----cchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCC-CcccHHHHHHhcCCC
Q 004584 364 SLNNVLLIGMTNRKDM-----LDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLA-PDVNLQELAARTKNY 437 (744)
Q Consensus 364 ~~~~v~vI~~tn~~~~-----id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~-~~~~l~~la~~t~g~ 437 (744)
.++.+.+||+|+..+. +|+++.| ||. .|.++.|+.+++..||+.+..++.....+. .+..+...+..+++|
T Consensus 304 ~~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry 380 (857)
T PRK10865 304 ARGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRY 380 (857)
T ss_pred hcCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhcc
Confidence 4578999999999874 7999999 997 588999999999999998776654332222 333444444555544
Q ss_pred C
Q 004584 438 S 438 (744)
Q Consensus 438 s 438 (744)
.
T Consensus 381 ~ 381 (857)
T PRK10865 381 I 381 (857)
T ss_pred c
Confidence 3
No 49
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.2e-28 Score=252.95 Aligned_cols=229 Identities=20% Similarity=0.229 Sum_probs=176.9
Q ss_pred ceeecCcchhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHhhHH
Q 004584 504 GMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQI 583 (744)
Q Consensus 504 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~~~i 583 (744)
|..+-+.+++++++-++ -.+.+.+.++.-|++|||+||||||||++||++|-+.+.||....+++. --.+.+.....+
T Consensus 308 G~DEAK~ELeEiVefLk-dP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEF-dEm~VGvGArRV 385 (752)
T KOG0734|consen 308 GVDEAKQELEEIVEFLK-DPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEF-DEMFVGVGARRV 385 (752)
T ss_pred ChHHHHHHHHHHHHHhc-CcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccch-hhhhhcccHHHH
Confidence 33333334444443332 2345567788999999999999999999999999999999999977763 222233334479
Q ss_pred HHHHHHHhcCCCeEEEEeccchhhccCCCCcc-hhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccc-cccce
Q 004584 584 VKVFEDAYKSPLSIIILDDIERLLEYVPIGPR-FSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGIC-DAFSV 661 (744)
Q Consensus 584 ~~if~~a~~~~~~il~iDEid~l~~~~~~g~~-~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~-~rf~~ 661 (744)
+++|..|++..||||||||||++...|...+. +.+..++.||..|++.. ++..|+|||+||.|+.||++..| +|||+
T Consensus 386 RdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~-qNeGiIvigATNfpe~LD~AL~RPGRFD~ 464 (752)
T KOG0734|consen 386 RDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFK-QNEGIIVIGATNFPEALDKALTRPGRFDR 464 (752)
T ss_pred HHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcC-cCCceEEEeccCChhhhhHHhcCCCccce
Confidence 99999999999999999999999877754333 67888899999999984 45689999999999999999888 99999
Q ss_pred EEEcCCCCHHHHHHHHHHc--cCCCHHHH-HHHHHhC-CCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHH
Q 004584 662 TYHVPTLKTDDAKKVLKQL--NVFAEEDV-DSASEAL-NDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDC 737 (744)
Q Consensus 662 ~i~~p~~~~~~~~~Il~~~--~~~~~~~~-~~~~~~~-~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~a 737 (744)
++.+|.|+..-+.+||+.+ ...-++++ ..++++- .+.+...+-|++..|+..|.. +|.+.||++|++-|
T Consensus 465 ~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~-------dga~~VtM~~LE~a 537 (752)
T KOG0734|consen 465 HVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAV-------DGAEMVTMKHLEFA 537 (752)
T ss_pred eEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHh-------cCcccccHHHHhhh
Confidence 9999999999999999975 22223333 2234443 477888888888888887544 58888999999998
Q ss_pred HHHHh
Q 004584 738 LQDMV 742 (744)
Q Consensus 738 l~~~~ 742 (744)
-++++
T Consensus 538 kDrIl 542 (752)
T KOG0734|consen 538 KDRIL 542 (752)
T ss_pred hhhee
Confidence 87653
No 50
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.6e-27 Score=229.33 Aligned_cols=240 Identities=17% Similarity=0.218 Sum_probs=194.6
Q ss_pred cccccccccceeecCcchhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEccccccccc
Q 004584 495 DDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGL 574 (744)
Q Consensus 495 ~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~ 574 (744)
+++....++|+.--+.++.+.++.+..+.+..++.+..||.++|+|||||||||++|+++|+.....||++.+++ ++-.
T Consensus 150 pdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgse-fvqk 228 (408)
T KOG0727|consen 150 PDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE-FVQK 228 (408)
T ss_pred CCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHH-HHHH
Confidence 345455567776666677777888888888899999999999999999999999999999999999999998887 5555
Q ss_pred chhhHhhHHHHHHHHHhcCCCeEEEEeccchhhccC-CCCcchhHHHHHHHHHHhccCC--CCCCcEEEEEeCCCCCCCC
Q 004584 575 HESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYV-PIGPRFSNIISQTMLVLLKRLP--PKGKKLLVIGTTSEVSFLD 651 (744)
Q Consensus 575 ~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~-~~g~~~~~~~~~~Ll~~l~~~~--~~~~~v~vi~~tn~~~~l~ 651 (744)
+-++.-..++++|+-|+.+.|+||||||||+++.++ +........+++.|+++|+++. +...++-||.+||+.+.+|
T Consensus 229 ylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtld 308 (408)
T KOG0727|consen 229 YLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLD 308 (408)
T ss_pred HhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccC
Confidence 555555689999999999999999999999998765 2222334677777777777664 3456899999999999999
Q ss_pred ccccc-cccceEEEcCCCCHHHHHHHHHH----ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCC
Q 004584 652 SVGIC-DAFSVTYHVPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGR 726 (744)
Q Consensus 652 ~~~l~-~rf~~~i~~p~~~~~~~~~Il~~----~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~ 726 (744)
|+.++ +|.++.|+||.|+..+.+-++.. +....+.|+..++.+-...+...+-.+++.|...|-. ..+
T Consensus 309 pallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr-------~nr 381 (408)
T KOG0727|consen 309 PALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVR-------ENR 381 (408)
T ss_pred HhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHH-------hcc
Confidence 99888 99999999999998887777775 3445566778888777777777888888888887543 366
Q ss_pred CCcchhhHHHHHHHHh
Q 004584 727 EKIKISHFYDCLQDMV 742 (744)
Q Consensus 727 ~~It~e~~~~al~~~~ 742 (744)
-.|...+|+++....+
T Consensus 382 yvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 382 YVVLQKDFEKAYKTVV 397 (408)
T ss_pred eeeeHHHHHHHHHhhc
Confidence 7799999999988654
No 51
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.95 E-value=5.4e-27 Score=226.98 Aligned_cols=218 Identities=18% Similarity=0.288 Sum_probs=169.1
Q ss_pred hhHHHHHHHHHHHHH---hcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHhhHHHHHHHH
Q 004584 513 KHIYQRAMLLVEQVK---VSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFED 589 (744)
Q Consensus 513 ~~~~~~~~~~~~~~~---~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~ 589 (744)
++.+..+....+.+. +.+.=.|+++|||||||||||++|+++|++.+.||+.++.++ ++|.+.+.....|+++|+.
T Consensus 127 EeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~-liGehVGdgar~Ihely~r 205 (368)
T COG1223 127 EEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATE-LIGEHVGDGARRIHELYER 205 (368)
T ss_pred HHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHH-HHHHHhhhHHHHHHHHHHH
Confidence 344554544444443 345557799999999999999999999999999999998776 7899988888899999999
Q ss_pred HhcCCCeEEEEeccchhhccCCCC--cchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCC
Q 004584 590 AYKSPLSIIILDDIERLLEYVPIG--PRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPT 667 (744)
Q Consensus 590 a~~~~~~il~iDEid~l~~~~~~g--~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~ 667 (744)
|++..|||+||||+|++.-.+.-. -+.-..+.++||+.|+++. .+..|+.||+||++++||+ ..++||...|+|..
T Consensus 206 A~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~-eneGVvtIaaTN~p~~LD~-aiRsRFEeEIEF~L 283 (368)
T COG1223 206 ARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK-ENEGVVTIAATNRPELLDP-AIRSRFEEEIEFKL 283 (368)
T ss_pred HHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc-cCCceEEEeecCChhhcCH-HHHhhhhheeeeeC
Confidence 999999999999999987433100 0012567889999999985 6678999999999999999 78999999999999
Q ss_pred CCHHHHHHHHHHc----cCCCHHHHHHHHHhCCCCcHHHHHH-HHHHHHhcccCCcccccccCCCCcchhhHHHHHHH
Q 004584 668 LKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYM-LIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQD 740 (744)
Q Consensus 668 ~~~~~~~~Il~~~----~~~~~~~~~~~~~~~~~g~ir~l~~-~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~~ 740 (744)
|+.+++..|++.+ ..-.+.++..+.+...+.+.|.+.. ++..|... |+.++++.|+.+|+..|+.+
T Consensus 284 P~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~-------Ai~ed~e~v~~edie~al~k 354 (368)
T COG1223 284 PNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHR-------AIAEDREKVEREDIEKALKK 354 (368)
T ss_pred CChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHH-------HHHhchhhhhHHHHHHHHHh
Confidence 9999999999974 2222334455555555555555443 34444443 34468889999999999985
No 52
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.9e-26 Score=255.23 Aligned_cols=441 Identities=18% Similarity=0.232 Sum_probs=273.9
Q ss_pred ccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhc---------CCCcE
Q 004584 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---------GMEPK 284 (744)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~---------~~~~~ 284 (744)
-.++. +.|-++++++++ +.+..+.. .+-+|.|+||+|||.++.-+|...- +..++
T Consensus 167 gklDP--vIGRd~EI~r~i-qIL~RR~K-------------NNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~ 230 (786)
T COG0542 167 GKLDP--VIGRDEEIRRTI-QILSRRTK-------------NNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIY 230 (786)
T ss_pred CCCCC--CcChHHHHHHHH-HHHhccCC-------------CCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEE
Confidence 34555 999999999884 44433322 2458899999999999999998772 22334
Q ss_pred Eecccchhc--ccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCc
Q 004584 285 IVNGPEVLS--KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV 362 (744)
Q Consensus 285 ~v~~~~l~~--~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~ 362 (744)
.++...+.. +|-|+.|++++.+.++..... +.||||||||.+.......++ ......++...|
T Consensus 231 sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~--------~vILFIDEiHtiVGAG~~~G~-a~DAaNiLKPaL------ 295 (786)
T COG0542 231 SLDLGSLVAGAKYRGEFEERLKAVLKEVEKSK--------NVILFIDEIHTIVGAGATEGG-AMDAANLLKPAL------ 295 (786)
T ss_pred EecHHHHhccccccCcHHHHHHHHHHHHhcCC--------CeEEEEechhhhcCCCccccc-ccchhhhhHHHH------
Confidence 445444443 899999999999999998764 469999999999866543221 122223333333
Q ss_pred cCCCcEEEEEEeCCCCc-----cchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCC-CCCcccHHHHHHhcCC
Q 004584 363 ESLNNVLLIGMTNRKDM-----LDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSF-LAPDVNLQELAARTKN 436 (744)
Q Consensus 363 ~~~~~v~vI~~tn~~~~-----id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~-~~~~~~l~~la~~t~g 436 (744)
.++.+.+||+|+.-+. -|+||-| ||. .|.+..|+.++-..||+..-.++..+.. ...|..+...+..++.
T Consensus 296 -ARGeL~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~R 371 (786)
T COG0542 296 -ARGELRCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDR 371 (786)
T ss_pred -hcCCeEEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHh
Confidence 3478999999976543 3999999 998 6899999999999999987766654332 2244455555555544
Q ss_pred CC-----hHHHHHHHHHHHHHHHHhccccCC-----------------------------------CC-----CC-Cccc
Q 004584 437 YS-----GAELEGVAKSAVSFALNRQLSMDD-----------------------------------LT-----KP-VDEE 470 (744)
Q Consensus 437 ~s-----g~dl~~l~~~A~~~a~~r~~~~~~-----------------------------------~~-----~~-~~~~ 470 (744)
|- +.--..++.+|+............ +. .. ....
T Consensus 372 YI~dR~LPDKAIDLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 451 (786)
T COG0542 372 YIPDRFLPDKAIDLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELE 451 (786)
T ss_pred hcccCCCCchHHHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHh
Confidence 42 222233444444322211000000 00 00 0000
Q ss_pred cceeehhHHHHHHhhh--ccCCccccccccccc-----cc-ceeecCcchhhHHHHHH---HHHHHHHhcCCCCceeeee
Q 004584 471 SIKVTMDDFLHALYEI--VPAFGASTDDLERSR-----LN-GMVDCGDRHKHIYQRAM---LLVEQVKVSKGSPLVTCLL 539 (744)
Q Consensus 471 ~~~it~~df~~al~~~--~Ps~~~~~~~l~~~~-----~~-g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~Ll 539 (744)
. .|+++++...+..+ .|.......+.+... +. .+++ +++++.... +........+..|..++||
T Consensus 452 ~-~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViG----Qd~AV~avs~aIrraRaGL~dp~rPigsFlF 526 (786)
T COG0542 452 A-EVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIG----QDEAVEAVSDAIRRARAGLGDPNRPIGSFLF 526 (786)
T ss_pred h-ccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeC----hHHHHHHHHHHHHHHhcCCCCCCCCceEEEe
Confidence 1 26667777776655 333221111111100 01 1111 223333322 2233344567788899999
Q ss_pred ecCCCCChhHHHHHHHhhcC---CCEEEEcccccc---------------cccchhhHhhHHHHHHHHHhcCCCeEEEEe
Q 004584 540 EGPSGSGKTALAATAGIDSD---FPFVKIISAESM---------------IGLHESTKCAQIVKVFEDAYKSPLSIIILD 601 (744)
Q Consensus 540 ~GppG~GKT~la~~~a~~~~---~~~i~v~~~~~~---------------~g~~~~~~~~~i~~if~~a~~~~~~il~iD 601 (744)
.||+|+|||.+|+++|..+. -.++++++++++ +||.++. .+-+..++.|+|||+||
T Consensus 527 ~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG------~LTEaVRr~PySViLlD 600 (786)
T COG0542 527 LGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGG------QLTEAVRRKPYSVILLD 600 (786)
T ss_pred eCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceecccc------chhHhhhcCCCeEEEec
Confidence 99999999999999998875 688999888763 5555542 34455677899999999
Q ss_pred ccchhhccCCCCcchhHHHHHHHHHHhccCC---CCC-----CcEEEEEeCCCCC------CCC----------------
Q 004584 602 DIERLLEYVPIGPRFSNIISQTMLVLLKRLP---PKG-----KKLLVIGTTSEVS------FLD---------------- 651 (744)
Q Consensus 602 Eid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~---~~~-----~~v~vi~~tn~~~------~l~---------------- 651 (744)
|||+.. ..+++.|+..|+.-. ..+ ++.+||.|||--. ..+
T Consensus 601 EIEKAH----------pdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~ 670 (786)
T COG0542 601 EIEKAH----------PDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEE 670 (786)
T ss_pred hhhhcC----------HHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHH
Confidence 999975 456667777776521 222 3578888998531 110
Q ss_pred -----ccccccccceEEEcCCCCHHHHHHHHHHc-------------cCCCHHHHHHHHHhCC---CCcHHHHHHHHHHH
Q 004584 652 -----SVGICDAFSVTYHVPTLKTDDAKKVLKQL-------------NVFAEEDVDSASEALN---DMPIKKLYMLIEMA 710 (744)
Q Consensus 652 -----~~~l~~rf~~~i~~p~~~~~~~~~Il~~~-------------~~~~~~~~~~~~~~~~---~g~ir~l~~~l~~a 710 (744)
+..+.+|++.+|.|.+++.+++.+|++.. ....++++...+.... ..++|-+..+++.-
T Consensus 671 l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~ 750 (786)
T COG0542 671 LKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQE 750 (786)
T ss_pred HHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHH
Confidence 00234899999999999999999999862 1122334444443332 66777777666543
No 53
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.1e-27 Score=239.28 Aligned_cols=259 Identities=15% Similarity=0.177 Sum_probs=187.1
Q ss_pred hHHHHHHhhhccCCcccccccccccccceeecCcchhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHh
Q 004584 477 DDFLHALYEIVPAFGASTDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGI 556 (744)
Q Consensus 477 ~df~~al~~~~Ps~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~ 556 (744)
.++.++++.- .-...+.+.|..+.|+.+.+..+++.+-.+..+.+.+ +..+.|.+++|++||||||||++||++|.
T Consensus 192 ~~Lve~lerd---Il~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F-~GirrPWkgvLm~GPPGTGKTlLAKAvAT 267 (491)
T KOG0738|consen 192 ADLVEALERD---ILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFF-KGIRRPWKGVLMVGPPGTGKTLLAKAVAT 267 (491)
T ss_pred HHHHHHHHHH---HhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHH-hhcccccceeeeeCCCCCcHHHHHHHHHH
Confidence 3555555532 1223445677777777776666666666666655554 45678999999999999999999999999
Q ss_pred hcCCCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhhccCCCCcc--hhHHHHHHHHHHhccCCCC
Q 004584 557 DSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPR--FSNIISQTMLVLLKRLPPK 634 (744)
Q Consensus 557 ~~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~~~g~~--~~~~~~~~Ll~~l~~~~~~ 634 (744)
+++..|..| ++..+..++.+++++.++=+|+-|+...|++|||||||+|...++.... .|.++...||..|+++...
T Consensus 268 Ec~tTFFNV-SsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t 346 (491)
T KOG0738|consen 268 ECGTTFFNV-SSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGT 346 (491)
T ss_pred hhcCeEEEe-chhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccc
Confidence 999999999 4555888888888889999999999999999999999999988765432 4788999999999998654
Q ss_pred CC---cEEEEEeCCCCCCCCccccccccceEEEcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHhCCCCcHHHHHHHH
Q 004584 635 GK---KLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLI 707 (744)
Q Consensus 635 ~~---~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~----~~~~~~~~~~~~~~~~~g~ir~l~~~l 707 (744)
.. .|+|+|+||-|+.+|. .+++||...|++|.|+.+.+..+++.. ....+-.+..+.....+.+...+.++|
T Consensus 347 ~e~~k~VmVLAATN~PWdiDE-AlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvC 425 (491)
T KOG0738|consen 347 LENSKVVMVLAATNFPWDIDE-ALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVC 425 (491)
T ss_pred cccceeEEEEeccCCCcchHH-HHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHH
Confidence 43 4999999999999998 778999999999999999999998863 122222233333333333333334444
Q ss_pred HHHHhcccCCccc----------ccccCCCCcchhhHHHHHHHH
Q 004584 708 EMAAQGEQGGAAE----------AIYSGREKIKISHFYDCLQDM 741 (744)
Q Consensus 708 ~~a~~~a~~~~~~----------a~~~g~~~It~e~~~~al~~~ 741 (744)
+.|..++..+... +..+-..-|+.++|++|+..+
T Consensus 426 reAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v 469 (491)
T KOG0738|consen 426 REASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKV 469 (491)
T ss_pred HHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHc
Confidence 4443333221110 001112449999999999865
No 54
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.4e-26 Score=222.71 Aligned_cols=232 Identities=19% Similarity=0.210 Sum_probs=187.0
Q ss_pred cceeecCcchhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHhhH
Q 004584 503 NGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQ 582 (744)
Q Consensus 503 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~~~ 582 (744)
+|+..--..+.++++.+.++.+.+...+...|+++|||||||+|||.+|+++|....+.||++.+++ ++-.+.++....
T Consensus 150 GgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgse-lvqk~igegsrm 228 (404)
T KOG0728|consen 150 GGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE-LVQKYIGEGSRM 228 (404)
T ss_pred ccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHH-HHHHHhhhhHHH
Confidence 3333333344556666677788888899999999999999999999999999999999999997777 555666666678
Q ss_pred HHHHHHHHhcCCCeEEEEeccchhhccCCCC-cchhHHHHHHHHHHhccCC--CCCCcEEEEEeCCCCCCCCccccc-cc
Q 004584 583 IVKVFEDAYKSPLSIIILDDIERLLEYVPIG-PRFSNIISQTMLVLLKRLP--PKGKKLLVIGTTSEVSFLDSVGIC-DA 658 (744)
Q Consensus 583 i~~if~~a~~~~~~il~iDEid~l~~~~~~g-~~~~~~~~~~Ll~~l~~~~--~~~~~v~vi~~tn~~~~l~~~~l~-~r 658 (744)
++++|--|+...|+|||+||||++...+..+ ......++++++++|++++ +..+++-||.+||+.+.||++.++ +|
T Consensus 229 vrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgr 308 (404)
T KOG0728|consen 229 VRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGR 308 (404)
T ss_pred HHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCc
Confidence 9999999999999999999999998766433 3346788999999988875 335689999999999999999888 99
Q ss_pred cceEEEcCCCCHHHHHHHHHH----ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhH
Q 004584 659 FSVTYHVPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHF 734 (744)
Q Consensus 659 f~~~i~~p~~~~~~~~~Il~~----~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~ 734 (744)
.++.|+||||+.+.+.+||+- .+..-+-++..+.....+.+..++..++..|...|-. +-+-.+|.|||
T Consensus 309 idrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alr-------errvhvtqedf 381 (404)
T KOG0728|consen 309 IDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALR-------ERRVHVTQEDF 381 (404)
T ss_pred ccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHH-------HhhccccHHHH
Confidence 999999999999999999984 2333445666777777777777788888777776533 35567999999
Q ss_pred HHHHHHHh
Q 004584 735 YDCLQDMV 742 (744)
Q Consensus 735 ~~al~~~~ 742 (744)
+-|+.+++
T Consensus 382 emav~kvm 389 (404)
T KOG0728|consen 382 EMAVAKVM 389 (404)
T ss_pred HHHHHHHH
Confidence 99998775
No 55
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.5e-26 Score=224.42 Aligned_cols=224 Identities=19% Similarity=0.217 Sum_probs=179.7
Q ss_pred chhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHhhHHHHHHHHH
Q 004584 511 RHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDA 590 (744)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a 590 (744)
.+.++++....+.+.+...+..||+++|+|||||||||.+|+++|+..+.-||++.+++ ++-.|.++....++++|+-|
T Consensus 188 klrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigse-lvqkyvgegarmvrelf~ma 266 (435)
T KOG0729|consen 188 KLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSE-LVQKYVGEGARMVRELFEMA 266 (435)
T ss_pred HHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHH-HHHHHhhhhHHHHHHHHHHh
Confidence 44556666677778888999999999999999999999999999999999999998887 56677777778999999999
Q ss_pred hcCCCeEEEEeccchhhccC-CCCcchhHHHHHHHHHHhccCC--CCCCcEEEEEeCCCCCCCCccccc-cccceEEEcC
Q 004584 591 YKSPLSIIILDDIERLLEYV-PIGPRFSNIISQTMLVLLKRLP--PKGKKLLVIGTTSEVSFLDSVGIC-DAFSVTYHVP 666 (744)
Q Consensus 591 ~~~~~~il~iDEid~l~~~~-~~g~~~~~~~~~~Ll~~l~~~~--~~~~~v~vi~~tn~~~~l~~~~l~-~rf~~~i~~p 666 (744)
+....|||||||||++.+.+ +.|....|.+++++|+++.++. +...++-|+.+||+|+.||++.++ +|.++.++|.
T Consensus 267 rtkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~ 346 (435)
T KOG0729|consen 267 RTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFG 346 (435)
T ss_pred cccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceecc
Confidence 99899999999999997654 3344457899999999888875 334578899999999999999888 9999999999
Q ss_pred CCCHHHHHHHHHHcc--CCCHHHHH-HHHHhCC-CCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHHHHh
Q 004584 667 TLKTDDAKKVLKQLN--VFAEEDVD-SASEALN-DMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDMV 742 (744)
Q Consensus 667 ~~~~~~~~~Il~~~~--~~~~~~~~-~~~~~~~-~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~~~~ 742 (744)
.|+.+.+..|++-.. ...+.++. +++++++ +....++..++-.|...|- ..-+...|+.+|.+|+++++
T Consensus 347 lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfai-------rarrk~atekdfl~av~kvv 419 (435)
T KOG0729|consen 347 LPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAI-------RARRKVATEKDFLDAVNKVV 419 (435)
T ss_pred CCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHH-------HHHhhhhhHHHHHHHHHHHH
Confidence 999999999988432 23344443 3566666 3444555666666665532 23456789999999999886
No 56
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.8e-26 Score=223.13 Aligned_cols=219 Identities=17% Similarity=0.241 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHhhHHHHHHHHHhcCCC
Q 004584 516 YQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPL 595 (744)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~ 595 (744)
+-..+.+.+.+...+..||+++|+|||||||||.+|++.|...+..|+++-+|+ ++-.+.+...+.+++.|.-|+...|
T Consensus 187 iVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQ-LVQMfIGdGAkLVRDAFaLAKEkaP 265 (424)
T KOG0652|consen 187 IVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQ-LVQMFIGDGAKLVRDAFALAKEKAP 265 (424)
T ss_pred hccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchH-HHhhhhcchHHHHHHHHHHhhccCC
Confidence 334456678889999999999999999999999999999999999999998887 4555556666789999999999999
Q ss_pred eEEEEeccchhhccCCCCc-chhHHHHHHHHHHhccCC--CCCCcEEEEEeCCCCCCCCccccc-cccceEEEcCCCCHH
Q 004584 596 SIIILDDIERLLEYVPIGP-RFSNIISQTMLVLLKRLP--PKGKKLLVIGTTSEVSFLDSVGIC-DAFSVTYHVPTLKTD 671 (744)
Q Consensus 596 ~il~iDEid~l~~~~~~g~-~~~~~~~~~Ll~~l~~~~--~~~~~v~vi~~tn~~~~l~~~~l~-~rf~~~i~~p~~~~~ 671 (744)
+||||||+|.+..++-.+. .....++++++++|+++. ....++-||++||+.+.|||+.++ +|.++.|+||.|+.+
T Consensus 266 ~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~ 345 (424)
T KOG0652|consen 266 TIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEE 345 (424)
T ss_pred eEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChH
Confidence 9999999999976653221 224678888888888775 334589999999999999999888 899999999999999
Q ss_pred HHHHHHHHc----cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHHHHh
Q 004584 672 DAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDMV 742 (744)
Q Consensus 672 ~~~~Il~~~----~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~~~~ 742 (744)
.+..|++-. ....+-...++.....+.+..++..++-.|...|-. .+...|+.++|.+++.++.
T Consensus 346 aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALR-------r~atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 346 ARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALR-------RGATEVTHEDFMEGILEVQ 413 (424)
T ss_pred HHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHh-------cccccccHHHHHHHHHHHH
Confidence 999999842 333344455666666677778887777777666443 4777899999999998764
No 57
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.93 E-value=4.8e-25 Score=239.25 Aligned_cols=239 Identities=17% Similarity=0.194 Sum_probs=184.7
Q ss_pred cccccccccceeecCcchhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEccccccccc
Q 004584 495 DDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGL 574 (744)
Q Consensus 495 ~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~ 574 (744)
+++.|..++|+......+.+.+.......+.+...+..++.++||+||||||||++|+++|++++.+|+.+.+++ +...
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~-l~~k 218 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSE-FVQK 218 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHH-HHHH
Confidence 344556666766666666666666666667777888889999999999999999999999999999999997665 3444
Q ss_pred chhhHhhHHHHHHHHHhcCCCeEEEEeccchhhccCCC-CcchhHH---HHHHHHHHhccCCCCCCcEEEEEeCCCCCCC
Q 004584 575 HESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPI-GPRFSNI---ISQTMLVLLKRLPPKGKKLLVIGTTSEVSFL 650 (744)
Q Consensus 575 ~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~~~-g~~~~~~---~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l 650 (744)
+.++....++++|..|+...|+||||||+|.+...+.. +...... ++..++..+++.. ...+++||+|||+++.+
T Consensus 219 ~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~-~~~~v~VI~aTN~~d~L 297 (398)
T PTZ00454 219 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD-QTTNVKVIMATNRADTL 297 (398)
T ss_pred hcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC-CCCCEEEEEecCCchhC
Confidence 44555668999999999999999999999999865521 1111223 3344445555442 23478999999999999
Q ss_pred Cccccc-cccceEEEcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccC
Q 004584 651 DSVGIC-DAFSVTYHVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSG 725 (744)
Q Consensus 651 ~~~~l~-~rf~~~i~~p~~~~~~~~~Il~~~----~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g 725 (744)
|++.++ +||+..|+||+|+.+++..|++.+ +...+.++..++....+.+.+.+.+++..|+..+-. .+
T Consensus 298 DpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r-------~~ 370 (398)
T PTZ00454 298 DPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVR-------KN 370 (398)
T ss_pred CHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH-------cC
Confidence 998777 899999999999999999999864 233345677777777788899999999999887543 46
Q ss_pred CCCcchhhHHHHHHHHh
Q 004584 726 REKIKISHFYDCLQDMV 742 (744)
Q Consensus 726 ~~~It~e~~~~al~~~~ 742 (744)
+..|+.+||.+|+..++
T Consensus 371 ~~~i~~~df~~A~~~v~ 387 (398)
T PTZ00454 371 RYVILPKDFEKGYKTVV 387 (398)
T ss_pred CCccCHHHHHHHHHHHH
Confidence 77899999999999875
No 58
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.5e-24 Score=243.34 Aligned_cols=211 Identities=19% Similarity=0.239 Sum_probs=170.5
Q ss_pred HHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEec
Q 004584 523 VEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDD 602 (744)
Q Consensus 523 ~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDE 602 (744)
.+++.+.+...|+++||+||||||||.+|||+|.+++.||+.+.+++.+ -...+.....++.+|..|+...|||+|+||
T Consensus 333 P~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv-E~~~g~~asrvr~lf~~ar~~aP~iifide 411 (774)
T KOG0731|consen 333 PEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV-EMFVGVGASRVRDLFPLARKNAPSIIFIDE 411 (774)
T ss_pred HHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH-HHhcccchHHHHHHHHHhhccCCeEEEecc
Confidence 4566677889999999999999999999999999999999999888753 222222244799999999999999999999
Q ss_pred cchhhccCC---C-C-cchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccc-cccceEEEcCCCCHHHHHHH
Q 004584 603 IERLLEYVP---I-G-PRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGIC-DAFSVTYHVPTLKTDDAKKV 676 (744)
Q Consensus 603 id~l~~~~~---~-g-~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~-~rf~~~i~~p~~~~~~~~~I 676 (744)
||.+...+. . | ..-.+..++.|+..||+.... ..|+|+|+||+++.||++.+| +|||+.++++.|+...+.+|
T Consensus 412 ida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~-~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i 490 (774)
T KOG0731|consen 412 IDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS-KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASI 490 (774)
T ss_pred cccccccccccccCCCChHHHHHHHHHHHHhcCCcCC-CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHH
Confidence 999998773 1 1 122456788899999998544 789999999999999999888 99999999999999999999
Q ss_pred HHHc--c-CC--CHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHHHHh
Q 004584 677 LKQL--N-VF--AEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDMV 742 (744)
Q Consensus 677 l~~~--~-~~--~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~~~~ 742 (744)
++.. . .. .+.++..+.....+.....+.+++..|+..|-. .+...|+..||.+|++.+.
T Consensus 491 ~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r-------~~~~~i~~~~~~~a~~Rvi 554 (774)
T KOG0731|consen 491 LKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAAR-------KGLREIGTKDLEYAIERVI 554 (774)
T ss_pred HHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHH-------hccCccchhhHHHHHHHHh
Confidence 9963 1 22 345566644444477777888888888887544 4788899999999999553
No 59
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.92 E-value=4.5e-24 Score=233.18 Aligned_cols=238 Identities=17% Similarity=0.252 Sum_probs=179.3
Q ss_pred cccccccceeecCcchhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccch
Q 004584 497 LERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHE 576 (744)
Q Consensus 497 l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~ 576 (744)
+.|..+.|+......+.+.+.......+.+...+..++.++||+||||||||++|+++|.+++.+|+.+.+.+. ...+.
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l-~~~~~ 206 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL-VQKFI 206 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHH-hHhhc
Confidence 33444555555555555555555666667777888999999999999999999999999999999999977764 44444
Q ss_pred hhHhhHHHHHHHHHhcCCCeEEEEeccchhhccCCCCc-chhHHHHHHHHHHhccCC--CCCCcEEEEEeCCCCCCCCcc
Q 004584 577 STKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGP-RFSNIISQTMLVLLKRLP--PKGKKLLVIGTTSEVSFLDSV 653 (744)
Q Consensus 577 ~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~~~g~-~~~~~~~~~Ll~~l~~~~--~~~~~v~vi~~tn~~~~l~~~ 653 (744)
++....++.+|..|+...|+||||||+|.+...+..+. .....+++.+..++..+. ....+++||+|||+++.+|++
T Consensus 207 g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~a 286 (389)
T PRK03992 207 GEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPA 286 (389)
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHH
Confidence 55566789999999988999999999999986653221 122344445554443332 223479999999999999998
Q ss_pred ccc-cccceEEEcCCCCHHHHHHHHHHcc----CCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCC
Q 004584 654 GIC-DAFSVTYHVPTLKTDDAKKVLKQLN----VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREK 728 (744)
Q Consensus 654 ~l~-~rf~~~i~~p~~~~~~~~~Il~~~~----~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~ 728 (744)
.++ +||+..++||+|+.+++.+||+... ...+.++..+.....+.+.+.+..++..|+..|-. ++...
T Consensus 287 llRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~-------~~~~~ 359 (389)
T PRK03992 287 ILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIR-------DDRTE 359 (389)
T ss_pred HcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH-------cCCCC
Confidence 776 8999999999999999999999741 11234566666666677888888888888877533 46678
Q ss_pred cchhhHHHHHHHHh
Q 004584 729 IKISHFYDCLQDMV 742 (744)
Q Consensus 729 It~e~~~~al~~~~ 742 (744)
|+.+||.+|++.+.
T Consensus 360 i~~~d~~~A~~~~~ 373 (389)
T PRK03992 360 VTMEDFLKAIEKVM 373 (389)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999999874
No 60
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.1e-25 Score=219.02 Aligned_cols=218 Identities=20% Similarity=0.204 Sum_probs=167.2
Q ss_pred hHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHhhHHHHHHHHHhcC
Q 004584 514 HIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKS 593 (744)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~ 593 (744)
+.++.+..+.+.....+..||++|+|||+||||||.+|+++|+.....|+++.++++ +-.+-+.....++++|+-|...
T Consensus 199 EsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseL-iQkylGdGpklvRqlF~vA~e~ 277 (440)
T KOG0726|consen 199 ESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSEL-IQKYLGDGPKLVRELFRVAEEH 277 (440)
T ss_pred HhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHH-HHHHhccchHHHHHHHHHHHhc
Confidence 334444556677788899999999999999999999999999999999999988874 4455555556899999999999
Q ss_pred CCeEEEEeccchhhccCC-CCcchhHHHHHHHHHHhccCC--CCCCcEEEEEeCCCCCCCCccccc-cccceEEEcCCCC
Q 004584 594 PLSIIILDDIERLLEYVP-IGPRFSNIISQTMLVLLKRLP--PKGKKLLVIGTTSEVSFLDSVGIC-DAFSVTYHVPTLK 669 (744)
Q Consensus 594 ~~~il~iDEid~l~~~~~-~g~~~~~~~~~~Ll~~l~~~~--~~~~~v~vi~~tn~~~~l~~~~l~-~rf~~~i~~p~~~ 669 (744)
+|+|+||||||++..++- ..++.-..+++++|++|+++. +....|-||.+||+.+.|||+.+| +|.++.|+||.|+
T Consensus 278 apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pD 357 (440)
T KOG0726|consen 278 APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 357 (440)
T ss_pred CCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCc
Confidence 999999999999987662 233345689999999988876 345689999999999999999888 9999999999999
Q ss_pred HHHHHHHHHHc-c------CCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHHHHh
Q 004584 670 TDDAKKVLKQL-N------VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDMV 742 (744)
Q Consensus 670 ~~~~~~Il~~~-~------~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~~~~ 742 (744)
....+.|++-. . ...-+++...-..+++.+|+ .++..|...|-. .-+-.++.+||.+|.+.+.
T Consensus 358 e~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIk---AictEaGllAlR-------erRm~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 358 EKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIK---AICTEAGLLALR-------ERRMKVTMEDFKKAKEKVL 427 (440)
T ss_pred hhhhceeEEEeecccchhccccHHHHhhcccccccccHH---HHHHHHhHHHHH-------HHHhhccHHHHHHHHHHHH
Confidence 99999998842 1 12222222222333455554 445555555322 2456799999999998774
No 61
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.92 E-value=3.4e-24 Score=233.75 Aligned_cols=231 Identities=18% Similarity=0.203 Sum_probs=173.8
Q ss_pred cceeecCcchhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHhhH
Q 004584 503 NGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQ 582 (744)
Q Consensus 503 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~~~ 582 (744)
.|+......+.+.+.......+.+...+..++.++||+||||||||++|+++|.+++.+|+.+.+.+ +++.+.++....
T Consensus 186 gGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~se-L~~k~~Ge~~~~ 264 (438)
T PTZ00361 186 GGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSE-LIQKYLGDGPKL 264 (438)
T ss_pred cCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecch-hhhhhcchHHHH
Confidence 4443333334444444444455566777889999999999999999999999999999999997765 455555556667
Q ss_pred HHHHHHHHhcCCCeEEEEeccchhhccCCCC-cchhHHHHHHHHHH---hccCCCCCCcEEEEEeCCCCCCCCccccc-c
Q 004584 583 IVKVFEDAYKSPLSIIILDDIERLLEYVPIG-PRFSNIISQTMLVL---LKRLPPKGKKLLVIGTTSEVSFLDSVGIC-D 657 (744)
Q Consensus 583 i~~if~~a~~~~~~il~iDEid~l~~~~~~g-~~~~~~~~~~Ll~~---l~~~~~~~~~v~vi~~tn~~~~l~~~~l~-~ 657 (744)
++++|..|+...|+||||||||.+...+... ......+++.++.+ +++.. ...++.||+|||+++.+|++.++ +
T Consensus 265 vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~-~~~~V~VI~ATNr~d~LDpaLlRpG 343 (438)
T PTZ00361 265 VRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD-SRGDVKVIMATNRIESLDPALIRPG 343 (438)
T ss_pred HHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc-ccCCeEEEEecCChHHhhHHhccCC
Confidence 9999999999999999999999998665321 11223344444444 44432 23478999999999999998776 8
Q ss_pred ccceEEEcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhh
Q 004584 658 AFSVTYHVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISH 733 (744)
Q Consensus 658 rf~~~i~~p~~~~~~~~~Il~~~----~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~ 733 (744)
||+..|+||+|+.+++.+||+.+ ....+.++..++....+.+.+.+.+++..|+..|.. .++..|+.+|
T Consensus 344 Rfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr-------~~r~~Vt~~D 416 (438)
T PTZ00361 344 RIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALR-------ERRMKVTQAD 416 (438)
T ss_pred eeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHH-------hcCCccCHHH
Confidence 99999999999999999999964 122334566777777777888888888888887544 4778899999
Q ss_pred HHHHHHHHh
Q 004584 734 FYDCLQDMV 742 (744)
Q Consensus 734 ~~~al~~~~ 742 (744)
|.+|++++.
T Consensus 417 ~~~A~~~v~ 425 (438)
T PTZ00361 417 FRKAKEKVL 425 (438)
T ss_pred HHHHHHHHH
Confidence 999999874
No 62
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.4e-24 Score=214.02 Aligned_cols=205 Identities=22% Similarity=0.299 Sum_probs=166.4
Q ss_pred CCcccccccccccccceeecCcchhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEccc
Q 004584 489 AFGASTDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISA 568 (744)
Q Consensus 489 s~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~ 568 (744)
+.-...+.+.|...-|+...++.+.+.+-.+..+. ++....+.|.+++||||||||||+.+|+++|.+.+..|.++.++
T Consensus 122 AIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFP-qlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSS 200 (439)
T KOG0739|consen 122 AIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFP-QLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 200 (439)
T ss_pred hhhccCCCCchhhhccchhHHHHHHhheeecccch-hhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehH
Confidence 33445667778777777776655555544444444 34566788999999999999999999999999999999999555
Q ss_pred ccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhhccCCCCc-chhHHHHHHHHHHhccCCCCCCcEEEEEeCCCC
Q 004584 569 ESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGP-RFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEV 647 (744)
Q Consensus 569 ~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~~~g~-~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~ 647 (744)
.++..+-+++++.++++|+-|+...|+||||||||.|.+.++.+. ..+.++...+|..|.++......++|+|+||-|
T Consensus 201 -DLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiP 279 (439)
T KOG0739|consen 201 -DLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIP 279 (439)
T ss_pred -HHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCc
Confidence 478888888888999999999999999999999999988776543 346788889999999998888899999999999
Q ss_pred CCCCccccccccceEEEcCCCCHHHHHHHHHHc-----cCCCHHHHHHHHHhCC
Q 004584 648 SFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQL-----NVFAEEDVDSASEALN 696 (744)
Q Consensus 648 ~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~-----~~~~~~~~~~~~~~~~ 696 (744)
+.||. .+|+||+.+|++|.|....+...++-. ...+++|..++.....
T Consensus 280 w~LDs-AIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTe 332 (439)
T KOG0739|consen 280 WVLDS-AIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTE 332 (439)
T ss_pred hhHHH-HHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcC
Confidence 99998 788999999999999999888888852 2456666666665543
No 63
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.3e-23 Score=215.00 Aligned_cols=243 Identities=19% Similarity=0.265 Sum_probs=182.5
Q ss_pred ccccccccceeecCcchhhHHHHHHHHHHHHHhc-CCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEccccccccc
Q 004584 496 DLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVS-KGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGL 574 (744)
Q Consensus 496 ~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~ 574 (744)
.+.+..++|+..+...+.+.+-.+.+..+.+... -..|+.++||+||||||||++|+++|++++.+|+.+.... +.++
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~-lt~K 166 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSN-LTSK 166 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccc-cchh
Confidence 4556667777777766666666666666766433 3468899999999999999999999999999999996655 5567
Q ss_pred chhhHhhHHHHHHHHHhcCCCeEEEEeccchhhccCCCCcc-hhHHHHHHHHHHhccCCCCC-CcEEEEEeCCCCCCCCc
Q 004584 575 HESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPR-FSNIISQTMLVLLKRLPPKG-KKLLVIGTTSEVSFLDS 652 (744)
Q Consensus 575 ~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~~~g~~-~~~~~~~~Ll~~l~~~~~~~-~~v~vi~~tn~~~~l~~ 652 (744)
+-++..+.++.+|.-|.+-.|+||||||+|+++..|..+++ ....+.+.++.+-+++.... .+|+|+||||+|..+|.
T Consensus 167 WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDe 246 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDE 246 (386)
T ss_pred hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHH
Confidence 77888889999999999999999999999999988754433 24456667777778876444 37999999999999998
Q ss_pred cccccccceEEEcCCCCHHHHHHHHHHc-------------------cCCCHHHHHHHHHhCCCCcHHHHHHHH----HH
Q 004584 653 VGICDAFSVTYHVPTLKTDDAKKVLKQL-------------------NVFAEEDVDSASEALNDMPIKKLYMLI----EM 709 (744)
Q Consensus 653 ~~l~~rf~~~i~~p~~~~~~~~~Il~~~-------------------~~~~~~~~~~~~~~~~~g~ir~l~~~l----~~ 709 (744)
...+|++.+++++.|+.+++.+||+-. +++++.|+.++|...+-.++|+++..- +.
T Consensus 247 -AiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~~d~ 325 (386)
T KOG0737|consen 247 -AIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGLLDL 325 (386)
T ss_pred -HHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccchhh
Confidence 455899999999999999999999852 477788888888877777777776652 00
Q ss_pred HHhcccCCcccccccC--CCCcchhhHHHHHHH
Q 004584 710 AAQGEQGGAAEAIYSG--REKIKISHFYDCLQD 740 (744)
Q Consensus 710 a~~~a~~~~~~a~~~g--~~~It~e~~~~al~~ 740 (744)
=...++....++...+ ...+++++|..+.+.
T Consensus 326 d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~ 358 (386)
T KOG0737|consen 326 DKAIADLKPTQAAASSCLLRPLEQEDFPKAINR 358 (386)
T ss_pred hhhhhhccCCcccccccccCcccHHHHHHHHHh
Confidence 0000110001111111 356899999998874
No 64
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.91 E-value=3.5e-23 Score=228.57 Aligned_cols=240 Identities=16% Similarity=0.239 Sum_probs=174.7
Q ss_pred ccccccccceeecCcchhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCC----------EEEE
Q 004584 496 DLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFP----------FVKI 565 (744)
Q Consensus 496 ~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~----------~i~v 565 (744)
++.|..+.|+......+.+.+.....+.+.+...+..++.++|||||||||||++|+++|++++.+ |+.+
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v 257 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNI 257 (512)
T ss_pred CCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEec
Confidence 344444555555544455555555566677778888899999999999999999999999987543 5555
Q ss_pred cccccccccchhhHhhHHHHHHHHHhc----CCCeEEEEeccchhhccCCCC--cchhHHHHHHHHHHhccCCCCCCcEE
Q 004584 566 ISAESMIGLHESTKCAQIVKVFEDAYK----SPLSIIILDDIERLLEYVPIG--PRFSNIISQTMLVLLKRLPPKGKKLL 639 (744)
Q Consensus 566 ~~~~~~~g~~~~~~~~~i~~if~~a~~----~~~~il~iDEid~l~~~~~~g--~~~~~~~~~~Ll~~l~~~~~~~~~v~ 639 (744)
..++ +++.+.++....++.+|+.|+. ..|+||||||+|.++..++.+ ....+.++..|+..|+++.. ..+++
T Consensus 258 ~~~e-Ll~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~-~~~Vi 335 (512)
T TIGR03689 258 KGPE-LLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES-LDNVI 335 (512)
T ss_pred cchh-hcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc-CCceE
Confidence 5554 4555666677789999998875 368999999999999776543 22345677888898988754 34799
Q ss_pred EEEeCCCCCCCCccccc-cccceEEEcCCCCHHHHHHHHHHc-c-------------CCCHHHHHHHHHhC---------
Q 004584 640 VIGTTSEVSFLDSVGIC-DAFSVTYHVPTLKTDDAKKVLKQL-N-------------VFAEEDVDSASEAL--------- 695 (744)
Q Consensus 640 vi~~tn~~~~l~~~~l~-~rf~~~i~~p~~~~~~~~~Il~~~-~-------------~~~~~~~~~~~~~~--------- 695 (744)
||+|||+++.||++.+| +||+..|+||+|+.+++.+|++.+ . +....++..++.+.
T Consensus 336 VI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~a~~~ 415 (512)
T TIGR03689 336 VIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLYATSE 415 (512)
T ss_pred EEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999998877 899999999999999999999874 1 22333444444331
Q ss_pred -------------------C-CCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHHH
Q 004584 696 -------------------N-DMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQD 740 (744)
Q Consensus 696 -------------------~-~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~~ 740 (744)
. ..+...+.+++++|...|-.+ .+..+...|+.+|+..|+.+
T Consensus 416 ~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~---~~~~~~~~~~~~~l~~a~~~ 477 (512)
T TIGR03689 416 ENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKD---HITGGQVGLRIEHLLAAVLD 477 (512)
T ss_pred ccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHH---HHhcCCcCcCHHHHHHHHHH
Confidence 0 244566777888887665422 22234567999999999985
No 65
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.90 E-value=4.1e-23 Score=233.50 Aligned_cols=209 Identities=19% Similarity=0.269 Sum_probs=163.5
Q ss_pred HHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccc
Q 004584 525 QVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIE 604 (744)
Q Consensus 525 ~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid 604 (744)
.+...+..++.++||+||||||||++|+++|.+++.+|+.+.+.+ +...+.+...+.++++|+.|+...|+||||||||
T Consensus 79 ~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~-~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid 157 (495)
T TIGR01241 79 KFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSD-FVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEID 157 (495)
T ss_pred HHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHH-HHHHHhcccHHHHHHHHHHHHhcCCCEEEEechh
Confidence 445556788899999999999999999999999999999997665 3334444455689999999999999999999999
Q ss_pred hhhccCCCC----cchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccc-cccceEEEcCCCCHHHHHHHHHH
Q 004584 605 RLLEYVPIG----PRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGIC-DAFSVTYHVPTLKTDDAKKVLKQ 679 (744)
Q Consensus 605 ~l~~~~~~g----~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~-~rf~~~i~~p~~~~~~~~~Il~~ 679 (744)
.+...+..+ .......++.|+..|+++.. ...++||||||+++.+|++.++ +||+..++||+|+.+++.+|++.
T Consensus 158 ~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~-~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~ 236 (495)
T TIGR01241 158 AVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT-NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKV 236 (495)
T ss_pred hhhhccccCcCCccHHHHHHHHHHHhhhccccC-CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHH
Confidence 998766432 12234566777788877643 3469999999999999998776 79999999999999999999997
Q ss_pred cc----CCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHHHHh
Q 004584 680 LN----VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDMV 742 (744)
Q Consensus 680 ~~----~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~~~~ 742 (744)
+- ...+.++..+.....+.+.+.+.+++..|+..+.. .+...|+.+||.+|++.+.
T Consensus 237 ~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~-------~~~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 237 HAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAAR-------KNKTEITMNDIEEAIDRVI 296 (495)
T ss_pred HHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHH-------cCCCCCCHHHHHHHHHHHh
Confidence 41 22345666666666677777777888777655322 3556799999999998763
No 66
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.90 E-value=8.9e-23 Score=211.20 Aligned_cols=168 Identities=14% Similarity=0.122 Sum_probs=137.9
Q ss_pred cCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHhhHHHHHHHHHhc-----CCCeEEEEecc
Q 004584 529 SKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYK-----SPLSIIILDDI 603 (744)
Q Consensus 529 ~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~-----~~~~il~iDEi 603 (744)
.+..+|..++||||||||||++|+++|++++.+|+.+..++ +.+.+.++.++.++++|+.|+. ..|||||||||
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~e-L~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEI 221 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGE-LESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDL 221 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHH-hhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehh
Confidence 56789999999999999999999999999999999998887 6667777788899999999864 57999999999
Q ss_pred chhhccCCCCc-chhHHH-HHHHHHHhccCC-----------CCCCcEEEEEeCCCCCCCCccccc-cccceEEEcCCCC
Q 004584 604 ERLLEYVPIGP-RFSNII-SQTMLVLLKRLP-----------PKGKKLLVIGTTSEVSFLDSVGIC-DAFSVTYHVPTLK 669 (744)
Q Consensus 604 d~l~~~~~~g~-~~~~~~-~~~Ll~~l~~~~-----------~~~~~v~vi~~tn~~~~l~~~~l~-~rf~~~i~~p~~~ 669 (744)
|++++.++.+. ...+.+ ..+|+.+++++. ....+|+||+|||+++.||++.+| +||+..+ +.|+
T Consensus 222 DA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd 299 (413)
T PLN00020 222 DAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPT 299 (413)
T ss_pred hhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCC
Confidence 99998775332 233444 478999888631 235679999999999999998887 8999865 5789
Q ss_pred HHHHHHHHHHc---cCCCHHHHHHHHHhCCCCc
Q 004584 670 TDDAKKVLKQL---NVFAEEDVDSASEALNDMP 699 (744)
Q Consensus 670 ~~~~~~Il~~~---~~~~~~~~~~~~~~~~~g~ 699 (744)
.+++.+||+.+ ...+..++..++..+.+.+
T Consensus 300 ~e~R~eIL~~~~r~~~l~~~dv~~Lv~~f~gq~ 332 (413)
T PLN00020 300 REDRIGVVHGIFRDDGVSREDVVKLVDTFPGQP 332 (413)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHcCCCCC
Confidence 99999999963 4666788888888876443
No 67
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=8.5e-23 Score=225.85 Aligned_cols=208 Identities=19% Similarity=0.266 Sum_probs=165.4
Q ss_pred HHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccch
Q 004584 526 VKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIER 605 (744)
Q Consensus 526 ~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~ 605 (744)
+...+..-|+++||+||||||||++|+++|.+.+.||..+.+++ ++-.+.+-....+|++|.+|++..|||+||||||+
T Consensus 175 y~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~-FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDA 253 (596)
T COG0465 175 YQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSD-FVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDA 253 (596)
T ss_pred hHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchh-hhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhh
Confidence 33456678899999999999999999999999999999997766 43333333444799999999999999999999999
Q ss_pred hhccCCCC--cch--hHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccc-cccceEEEcCCCCHHHHHHHHHHc
Q 004584 606 LLEYVPIG--PRF--SNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGIC-DAFSVTYHVPTLKTDDAKKVLKQL 680 (744)
Q Consensus 606 l~~~~~~g--~~~--~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~-~rf~~~i~~p~~~~~~~~~Il~~~ 680 (744)
+...+..| ++. -+..++.||.+|++.. .+..|+||++||+|+.+|++.+| +||++.+.++.|+...+++|++-.
T Consensus 254 vGr~Rg~g~GggnderEQTLNQlLvEmDGF~-~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH 332 (596)
T COG0465 254 VGRQRGAGLGGGNDEREQTLNQLLVEMDGFG-GNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVH 332 (596)
T ss_pred cccccCCCCCCCchHHHHHHHHHHhhhccCC-CCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHH
Confidence 99887543 222 2347788889999885 45689999999999999999888 999999999999999999999942
Q ss_pred ---cC-CCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHHHHh
Q 004584 681 ---NV-FAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDMV 742 (744)
Q Consensus 681 ---~~-~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~~~~ 742 (744)
.. ..+-++..+.....+.....+.+++..|+..+-. .+...|++.||.+|.+.++
T Consensus 333 ~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar-------~n~~~i~~~~i~ea~drv~ 391 (596)
T COG0465 333 AKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAAR-------RNKKEITMRDIEEAIDRVI 391 (596)
T ss_pred hhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHH-------hcCeeEeccchHHHHHHHh
Confidence 11 2233444545555566777788888777777543 4678899999999999875
No 68
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.89 E-value=1.3e-22 Score=242.09 Aligned_cols=202 Identities=18% Similarity=0.128 Sum_probs=157.7
Q ss_pred hcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEccccccccc-------------c-------------------
Q 004584 528 VSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGL-------------H------------------- 575 (744)
Q Consensus 528 ~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~-------------~------------------- 575 (744)
+.+..+++++||+||||||||.+|+++|.++++||+.+.+++.+-++ +
T Consensus 1624 rLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e 1703 (2281)
T CHL00206 1624 RLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLT 1703 (2281)
T ss_pred HcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhh
Confidence 44668899999999999999999999999999999999777654211 1
Q ss_pred ----------hhhHhhHHHHHHHHHhcCCCeEEEEeccchhhccCCCCcchhH-HHHHHHHHHhccCC--CCCCcEEEEE
Q 004584 576 ----------ESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSN-IISQTMLVLLKRLP--PKGKKLLVIG 642 (744)
Q Consensus 576 ----------~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~~~g~~~~~-~~~~~Ll~~l~~~~--~~~~~v~vi~ 642 (744)
++.....++.+|+.|++.+||||||||||.|.... ++ ..+..|+..|++.. .....|+|||
T Consensus 1704 ~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d------s~~ltL~qLLneLDg~~~~~s~~~VIVIA 1777 (2281)
T CHL00206 1704 MMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE------SNYLSLGLLVNSLSRDCERCSTRNILVIA 1777 (2281)
T ss_pred hcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc------cceehHHHHHHHhccccccCCCCCEEEEE
Confidence 11122348899999999999999999999997431 22 23677888888653 2345799999
Q ss_pred eCCCCCCCCccccc-cccceEEEcCCCCHHHHHHHHHH---ccCC-C---HHHHHHHHHhCCCCcHHHHHHHHHHHHhcc
Q 004584 643 TTSEVSFLDSVGIC-DAFSVTYHVPTLKTDDAKKVLKQ---LNVF-A---EEDVDSASEALNDMPIKKLYMLIEMAAQGE 714 (744)
Q Consensus 643 ~tn~~~~l~~~~l~-~rf~~~i~~p~~~~~~~~~Il~~---~~~~-~---~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a 714 (744)
|||+|+.+||+.+| |||++.|+++.|+..++++++.. ..++ . ..++..++....+.+.+.+.+++..|+..|
T Consensus 1778 ATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliA 1857 (2281)
T CHL00206 1778 STHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSIS 1857 (2281)
T ss_pred eCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999888 89999999999997777776652 2211 1 124566666777999999999999999885
Q ss_pred cCCcccccccCCCCcchhhHHHHHHHHh
Q 004584 715 QGGAAEAIYSGREKIKISHFYDCLQDMV 742 (744)
Q Consensus 715 ~~~~~~a~~~g~~~It~e~~~~al~~~~ 742 (744)
-. .+...|+.++++.|++..+
T Consensus 1858 ir-------q~ks~Id~~~I~~Al~Rq~ 1878 (2281)
T CHL00206 1858 IT-------QKKSIIDTNTIRSALHRQT 1878 (2281)
T ss_pred HH-------cCCCccCHHHHHHHHHHHH
Confidence 43 5788899999999998654
No 69
>CHL00176 ftsH cell division protein; Validated
Probab=99.89 E-value=1.9e-22 Score=230.23 Aligned_cols=208 Identities=18% Similarity=0.261 Sum_probs=160.3
Q ss_pred HHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccc
Q 004584 525 QVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIE 604 (744)
Q Consensus 525 ~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid 604 (744)
.+...+...+.++||+||||||||++|+++|.+.+.+|+.+.+.+ +...+.+.....++.+|..|+...||||||||||
T Consensus 207 ~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~-f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID 285 (638)
T CHL00176 207 RFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSE-FVEMFVGVGAARVRDLFKKAKENSPCIVFIDEID 285 (638)
T ss_pred HHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHH-HHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecch
Confidence 344556677899999999999999999999999999999997765 3333334445578999999999999999999999
Q ss_pred hhhccCCCC----cchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccc-cccceEEEcCCCCHHHHHHHHHH
Q 004584 605 RLLEYVPIG----PRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGIC-DAFSVTYHVPTLKTDDAKKVLKQ 679 (744)
Q Consensus 605 ~l~~~~~~g----~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~-~rf~~~i~~p~~~~~~~~~Il~~ 679 (744)
.+...++.+ .......+..|+..+++.. ...+++||++||+++.+|++.++ +||+..++|++|+.+++.+||+.
T Consensus 286 ~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~-~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~ 364 (638)
T CHL00176 286 AVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK-GNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKV 364 (638)
T ss_pred hhhhcccCCCCCCcHHHHHHHHHHHhhhcccc-CCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHH
Confidence 998665432 1122345555666666553 34579999999999999998776 89999999999999999999997
Q ss_pred cc---CC-CHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHHHH
Q 004584 680 LN---VF-AEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDM 741 (744)
Q Consensus 680 ~~---~~-~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~~~ 741 (744)
.- .. .+.++..+.....+.+.+++.+++..|+..+.. .+...||.+||.+|++++
T Consensus 365 ~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r-------~~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 365 HARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTAR-------RKKATITMKEIDTAIDRV 423 (638)
T ss_pred HHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH-------hCCCCcCHHHHHHHHHHH
Confidence 42 22 233444444444567889999999888766432 366789999999999876
No 70
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.88 E-value=5.7e-22 Score=215.95 Aligned_cols=232 Identities=18% Similarity=0.246 Sum_probs=168.4
Q ss_pred cccceeecCcchhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHh
Q 004584 501 RLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKC 580 (744)
Q Consensus 501 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~ 580 (744)
.+.|+......+.+.+.......+.+...+..++.++||+||||||||++|+++|...+.+|+.+.+.+ +...+.++..
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~-l~~~~~g~~~ 201 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE-LVRKYIGEGA 201 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHH-HHHHhhhHHH
Confidence 334444443333334444444445566677888999999999999999999999999999999987655 3444445555
Q ss_pred hHHHHHHHHHhcCCCeEEEEeccchhhccCCCCc-chhHHHHHHHHHH---hccCCCCCCcEEEEEeCCCCCCCCccccc
Q 004584 581 AQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGP-RFSNIISQTMLVL---LKRLPPKGKKLLVIGTTSEVSFLDSVGIC 656 (744)
Q Consensus 581 ~~i~~if~~a~~~~~~il~iDEid~l~~~~~~g~-~~~~~~~~~Ll~~---l~~~~~~~~~v~vi~~tn~~~~l~~~~l~ 656 (744)
..++.+|..++...|+||||||+|.+...+.... .....+++.+..+ ++... ...++.||+|||+++.+|++.++
T Consensus 202 ~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~-~~~~v~vI~ttn~~~~ld~al~r 280 (364)
T TIGR01242 202 RLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD-PRGNVKVIAATNRPDILDPALLR 280 (364)
T ss_pred HHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC-CCCCEEEEEecCChhhCChhhcC
Confidence 6789999999888999999999999976543211 1122334444444 44432 23478999999999999998766
Q ss_pred -cccceEEEcCCCCHHHHHHHHHHcc--C--CCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcch
Q 004584 657 -DAFSVTYHVPTLKTDDAKKVLKQLN--V--FAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKI 731 (744)
Q Consensus 657 -~rf~~~i~~p~~~~~~~~~Il~~~~--~--~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~ 731 (744)
+||+..++||+|+.+++.+|++... . ..+.++..+.....+.+.+.+..++..|+..|-. .+...|+.
T Consensus 281 ~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~-------~~~~~i~~ 353 (364)
T TIGR01242 281 PGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIR-------EERDYVTM 353 (364)
T ss_pred cccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH-------hCCCccCH
Confidence 8999999999999999999999742 1 1123455555556677778888888888877533 47788999
Q ss_pred hhHHHHHHHH
Q 004584 732 SHFYDCLQDM 741 (744)
Q Consensus 732 e~~~~al~~~ 741 (744)
+||.+|+.++
T Consensus 354 ~d~~~a~~~~ 363 (364)
T TIGR01242 354 DDFIKAVEKV 363 (364)
T ss_pred HHHHHHHHHh
Confidence 9999999876
No 71
>CHL00181 cbbX CbbX; Provisional
Probab=99.88 E-value=1.9e-21 Score=203.14 Aligned_cols=235 Identities=18% Similarity=0.266 Sum_probs=172.1
Q ss_pred cCchHHHHHHHHHHHHhccCCChhHHhHhCCCCC---ceEEEEcCCCChHHHHHHHHHHHhc------CCCcEEecccch
Q 004584 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHV---KGMLLYGPPGTGKTLMARQIGKMLN------GMEPKIVNGPEV 291 (744)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~---~giLL~GppGtGKT~lar~la~~l~------~~~~~~v~~~~l 291 (744)
++|++++++++ ++.+.. +..+.+.++.|+.++ .++||+||||||||++|+++|+.+. ..+++.+++.++
T Consensus 25 l~Gl~~vK~~i-~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 25 LVGLAPVKTRI-REIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred cCCcHHHHHHH-HHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 99999999988 776655 334577788888664 3589999999999999999999873 234678899999
Q ss_pred hcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEE
Q 004584 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLI 371 (744)
Q Consensus 292 ~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI 371 (744)
.++|.|+++.+++.+|+.+.. .||||||+|.+++.++. ......++..|+..|+. ...+++||
T Consensus 103 ~~~~~g~~~~~~~~~l~~a~g-----------gVLfIDE~~~l~~~~~~----~~~~~e~~~~L~~~me~--~~~~~~vI 165 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKAMG-----------GVLFIDEAYYLYKPDNE----RDYGSEAIEILLQVMEN--QRDDLVVI 165 (287)
T ss_pred HHHHhccchHHHHHHHHHccC-----------CEEEEEccchhccCCCc----cchHHHHHHHHHHHHhc--CCCCEEEE
Confidence 999999998888888887643 39999999999754322 23456788889998874 34578888
Q ss_pred EEeCCCC-----ccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHh------cCCCC-h
Q 004584 372 GMTNRKD-----MLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAAR------TKNYS-G 439 (744)
Q Consensus 372 ~~tn~~~-----~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~------t~g~s-g 439 (744)
++++... .++|++++ ||+..|+|++|+.+++.+|++.++++.... +.++ ....+... ...|. +
T Consensus 166 ~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~--l~~~-~~~~L~~~i~~~~~~~~~GNa 240 (287)
T CHL00181 166 FAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQ--LTPE-AEKALLDYIKKRMEQPLFANA 240 (287)
T ss_pred EeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCC--CChh-HHHHHHHHHHHhCCCCCCccH
Confidence 8886532 23699999 999999999999999999999998765421 3322 23333332 23344 8
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHH
Q 004584 440 AELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFL 480 (744)
Q Consensus 440 ~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~ 480 (744)
+++.++++.|......|....... .....+-..++.+|+.
T Consensus 241 R~vrn~ve~~~~~~~~r~~~~~~~-~~~~~~l~~~~~~d~~ 280 (287)
T CHL00181 241 RSVRNALDRARMRQANRIFESGGR-VLTKADLVTIEAEDIL 280 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCC-CCCHHHHhCCCHHHHh
Confidence 999999999999888887654211 1112334455566654
No 72
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.5e-22 Score=201.42 Aligned_cols=208 Identities=19% Similarity=0.205 Sum_probs=164.4
Q ss_pred HHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEec
Q 004584 523 VEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDD 602 (744)
Q Consensus 523 ~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDE 602 (744)
.+.+.+.+..+|.+++||||||+|||.+|+++|...+.+|+.+.+.+ ++..+.++....|++.|..|+...|||||+||
T Consensus 155 p~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~-lv~kyiGEsaRlIRemf~yA~~~~pciifmde 233 (388)
T KOG0651|consen 155 PELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSA-LVDKYIGESARLIRDMFRYAREVIPCIIFMDE 233 (388)
T ss_pred chhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhh-hhhhhcccHHHHHHHHHHHHhhhCceEEeehh
Confidence 34556678899999999999999999999999999999999996655 67777778888999999999999999999999
Q ss_pred cchhhccCCC-CcchhHHHHHHHHHHhccCC--CCCCcEEEEEeCCCCCCCCccccc-cccceEEEcCCCCHHHHHHHHH
Q 004584 603 IERLLEYVPI-GPRFSNIISQTMLVLLKRLP--PKGKKLLVIGTTSEVSFLDSVGIC-DAFSVTYHVPTLKTDDAKKVLK 678 (744)
Q Consensus 603 id~l~~~~~~-g~~~~~~~~~~Ll~~l~~~~--~~~~~v~vi~~tn~~~~l~~~~l~-~rf~~~i~~p~~~~~~~~~Il~ 678 (744)
||++.+++-. +......++.+|+++++++. +...+|-+|+|||+|+.|+++.+| +|.++.++.|.|....+..|++
T Consensus 234 iDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~K 313 (388)
T KOG0651|consen 234 IDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILK 313 (388)
T ss_pred hhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEe
Confidence 9999876632 22234568889999888875 345689999999999999999888 9999999999999888888877
Q ss_pred H-------ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHHHH
Q 004584 679 Q-------LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDM 741 (744)
Q Consensus 679 ~-------~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~~~ 741 (744)
- ++.+.++.+..+... .+..++.+.+..|...+ +...+..+-.|+|..++.+.
T Consensus 314 ih~~~i~~~Geid~eaivK~~d~---f~gad~rn~~tEag~Fa-------~~~~~~~vl~Ed~~k~vrk~ 373 (388)
T KOG0651|consen 314 IHVQPIDFHGEIDDEAILKLVDG---FNGADLRNVCTEAGMFA-------IPEERDEVLHEDFMKLVRKQ 373 (388)
T ss_pred eccccccccccccHHHHHHHHhc---cChHHHhhhcccccccc-------cchhhHHHhHHHHHHHHHHH
Confidence 4 234444555554444 44444666666666553 33466778889999888754
No 73
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.86 E-value=6.6e-21 Score=199.30 Aligned_cols=236 Identities=17% Similarity=0.227 Sum_probs=174.8
Q ss_pred cCchHHHHHHHHHHHHhccCCChhHHhHhCCCC---CceEEEEcCCCChHHHHHHHHHHHhcC------CCcEEecccch
Q 004584 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKH---VKGMLLYGPPGTGKTLMARQIGKMLNG------MEPKIVNGPEV 291 (744)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~---~~giLL~GppGtGKT~lar~la~~l~~------~~~~~v~~~~l 291 (744)
++|+++.++++ ++.... +..+....++|+++ ..++||+||||||||++|+++|+.+.. .+++.++++++
T Consensus 24 l~Gl~~vk~~i-~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 24 LIGLKPVKTRI-REIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred ccCHHHHHHHH-HHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 89999999998 666655 55667888889875 448999999999999999999988742 25778889999
Q ss_pred hcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEE
Q 004584 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLI 371 (744)
Q Consensus 292 ~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI 371 (744)
++.|.|+++.+++.+|+.+.. ++|||||++.+.+.++. ......+++.|+..|+. ...+++||
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~-----------gvL~iDEi~~L~~~~~~----~~~~~~~~~~Ll~~le~--~~~~~~vI 164 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG-----------GVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMEN--QRDDLVVI 164 (284)
T ss_pred hHhhcccchHHHHHHHHHccC-----------cEEEEechhhhccCCCc----cchHHHHHHHHHHHHhc--CCCCEEEE
Confidence 999999998889999988753 39999999999754322 13456788889998874 34678888
Q ss_pred EEeCCC--Cc---cchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHh-------cCCCCh
Q 004584 372 GMTNRK--DM---LDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAAR-------TKNYSG 439 (744)
Q Consensus 372 ~~tn~~--~~---id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~-------t~g~sg 439 (744)
++++.. +. ++|++++ ||...|+||+++.+++.+|++.++++.... +. +..+..+... ..--++
T Consensus 165 ~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~--l~-~~a~~~L~~~l~~~~~~~~~GN~ 239 (284)
T TIGR02880 165 LAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYR--FS-AEAEEAFADYIALRRTQPHFANA 239 (284)
T ss_pred EeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccc--cC-HHHHHHHHHHHHHhCCCCCCChH
Confidence 887653 22 4899999 999999999999999999999998875421 22 2234444443 122368
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHH
Q 004584 440 AELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLH 481 (744)
Q Consensus 440 ~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~ 481 (744)
+++.++++.+......|....... .....+-..++.+|+..
T Consensus 240 R~lrn~ve~~~~~~~~r~~~~~~~-~~~~~~~~~~~~~d~~~ 280 (284)
T TIGR02880 240 RSIRNAIDRARLRQANRLFCDLDR-VLDKSDLETIDPEDLLA 280 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCC-CCCHHHHhCCCHHHHhh
Confidence 999999999998888886543221 11123344566666543
No 74
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.9e-21 Score=194.34 Aligned_cols=215 Identities=24% Similarity=0.362 Sum_probs=165.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhc--------CCCcEEecccchhcccccchHHHHHHHHHHHHhcccccCCCCC
Q 004584 251 IKHVKGMLLYGPPGTGKTLMARQIGKMLN--------GMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSD 322 (744)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~la~~l~--------~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~ 322 (744)
+...|=+|||||||||||++++++|+.+. ...++.+|+..+++||++++.+.+.++|+...+.... .+.
T Consensus 174 It~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d---~~~ 250 (423)
T KOG0744|consen 174 ITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVED---RGN 250 (423)
T ss_pred eeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhC---CCc
Confidence 34567799999999999999999999984 1235679999999999999999999999998876544 233
Q ss_pred eeEEEEcCcchhcccCCCCCCCC--ccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCC
Q 004584 323 LHVIIFDEIDAICKSRGSTRDGT--GVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPD 400 (744)
Q Consensus 323 p~Il~iDEid~l~~~~~~~~~~~--~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd 400 (744)
...++|||+++|+..|.+..+++ ...-++++.+|++||.++...||++.+|+|-.+.||.|+.. |-|...++++|+
T Consensus 251 lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt 328 (423)
T KOG0744|consen 251 LVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPT 328 (423)
T ss_pred EEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCcc
Confidence 56788999999988775443333 34568999999999999999999999999999999999998 999999999999
Q ss_pred HHHHHHHHHHHHhcccccCCCCCcc--------------cHHHHHHh-cCCCChHHHHHHHHHHHHHHHHhccccCCCCC
Q 004584 401 ENGRLQILQIHTNKMKENSFLAPDV--------------NLQELAAR-TKNYSGAELEGVAKSAVSFALNRQLSMDDLTK 465 (744)
Q Consensus 401 ~~~r~~Il~~~~~~~~~~~~~~~~~--------------~l~~la~~-t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~ 465 (744)
...+.+|++.+...+-..+.+.... ....+... +.|.+|+.|+.|=--|...-
T Consensus 329 ~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~gLSGRtlrkLP~Laha~y------------ 396 (423)
T KOG0744|consen 329 AEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTVGLSGRTLRKLPLLAHAEY------------ 396 (423)
T ss_pred HHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhcCCccchHhhhhHHHHHhc------------
Confidence 9999999998887664333222111 11222332 47888888765443332211
Q ss_pred CCccccceeehhHHHHHHhh
Q 004584 466 PVDEESIKVTMDDFLHALYE 485 (744)
Q Consensus 466 ~~~~~~~~it~~df~~al~~ 485 (744)
.+...++.++|..|+-+
T Consensus 397 ---~~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 397 ---FRTFTVDLSNFLLALLE 413 (423)
T ss_pred ---cCCCccChHHHHHHHHH
Confidence 22357888999888754
No 75
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=9.6e-21 Score=217.99 Aligned_cols=244 Identities=20% Similarity=0.231 Sum_probs=188.8
Q ss_pred ccccccccceeecCcchhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcC-----CCEEEEccccc
Q 004584 496 DLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSD-----FPFVKIISAES 570 (744)
Q Consensus 496 ~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~-----~~~i~v~~~~~ 570 (744)
.+.+..++|+..|..++++.+-.+..+.+.+.....+|+.++||+||||||||.+|+++|..+. ..|..-++++
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD- 339 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD- 339 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch-
Confidence 4556667788888888888888889999999999999999999999999999999999997663 2233333343
Q ss_pred ccccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhhccCCC-CcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCC
Q 004584 571 MIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPI-GPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSF 649 (744)
Q Consensus 571 ~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~~~-g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~ 649 (744)
..+.+.++.+.+++-+|+.|++..|+|||+||||-|++.++. .......+..+|+.+|++++ ....|+||||||+++.
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGld-sRgqVvvigATnRpda 418 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLD-SRGQVVVIGATNRPDA 418 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCC-CCCceEEEcccCCccc
Confidence 456777777779999999999999999999999999988743 33446788999999999995 4568999999999999
Q ss_pred CCccccc-cccceEEEcCCCCHHHHHHHHHHc-----cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccc--
Q 004584 650 LDSVGIC-DAFSVTYHVPTLKTDDAKKVLKQL-----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEA-- 721 (744)
Q Consensus 650 l~~~~l~-~rf~~~i~~p~~~~~~~~~Il~~~-----~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a-- 721 (744)
+|++..| +||++.++||.|+.+++.+|+.-. ......-...+.....++..+.+..++..|+..+-.+.-.-
T Consensus 419 ~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y 498 (1080)
T KOG0732|consen 419 IDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIY 498 (1080)
T ss_pred cchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeee
Confidence 9997665 999999999999999999999853 22333334444455556666778888888887764431111
Q ss_pred -------cccCCCCcchhhHHHHHHHH
Q 004584 722 -------IYSGREKIKISHFYDCLQDM 741 (744)
Q Consensus 722 -------~~~g~~~It~e~~~~al~~~ 741 (744)
+......|..+||..|+.+.
T Consensus 499 ~s~~kl~~d~~~ikV~~~~f~~A~~~i 525 (1080)
T KOG0732|consen 499 SSSDKLLIDVALIKVEVRDFVEAMSRI 525 (1080)
T ss_pred cccccccccchhhhhhhHhhhhhhhcc
Confidence 11222347888888887754
No 76
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.9e-21 Score=205.10 Aligned_cols=237 Identities=20% Similarity=0.237 Sum_probs=173.0
Q ss_pred ceeecCcchhhHHHHHHH----HHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCE-EEEcccccccccchhh
Q 004584 504 GMVDCGDRHKHIYQRAML----LVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPF-VKIISAESMIGLHEST 578 (744)
Q Consensus 504 g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~-i~v~~~~~~~g~~~~~ 578 (744)
|+-+.+.++..+++++-. -.+.+.+.+...-+++|||||||||||.+||.+.+.++..- --+++|+. ..+|.++
T Consensus 222 GIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI-L~KYVGe 300 (744)
T KOG0741|consen 222 GIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI-LNKYVGE 300 (744)
T ss_pred ccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH-HHHhhcc
Confidence 344444555555554321 12445677888889999999999999999999999987642 33567774 4566677
Q ss_pred HhhHHHHHHHHHh--------cCCCeEEEEeccchhhccCCC---CcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCC
Q 004584 579 KCAQIVKVFEDAY--------KSPLSIIILDDIERLLEYVPI---GPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEV 647 (744)
Q Consensus 579 ~~~~i~~if~~a~--------~~~~~il~iDEid~l~~~~~~---g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~ 647 (744)
+++++|++|.+|. .+...||+|||||++...|++ +..+.+.+.+.||.-|+++ +...+++|||.||+.
T Consensus 301 SE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGV-eqLNNILVIGMTNR~ 379 (744)
T KOG0741|consen 301 SEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGV-EQLNNILVIGMTNRK 379 (744)
T ss_pred cHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccH-HhhhcEEEEeccCch
Confidence 7779999999984 245679999999999998754 3457789999999999988 456799999999999
Q ss_pred CCCCccccc-cccceEEEcCCCCHHHHHHHHHHc-------c-CCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCc
Q 004584 648 SFLDSVGIC-DAFSVTYHVPTLKTDDAKKVLKQL-------N-VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGA 718 (744)
Q Consensus 648 ~~l~~~~l~-~rf~~~i~~p~~~~~~~~~Il~~~-------~-~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~ 718 (744)
|++|.+.|| +||...+++..|++..+.+|++-. + .-.+-|+.++.+.....+..++--++..|...|..+.
T Consensus 380 DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~ 459 (744)
T KOG0741|consen 380 DLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRH 459 (744)
T ss_pred hhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhh
Confidence 999999888 999999999999988888888731 1 2223455666665556666666666665544433221
Q ss_pred cc------cc--ccCCCCcchhhHHHHHHHHh
Q 004584 719 AE------AI--YSGREKIKISHFYDCLQDMV 742 (744)
Q Consensus 719 ~~------a~--~~g~~~It~e~~~~al~~~~ 742 (744)
.. +. ..+.-.|+.+||..||+++-
T Consensus 460 vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVk 491 (744)
T KOG0741|consen 460 VKAGGKVEVDPVAIENLKVTRGDFLNALEDVK 491 (744)
T ss_pred hccCcceecCchhhhheeecHHHHHHHHHhcC
Confidence 11 11 12345699999999999764
No 77
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.85 E-value=2.5e-20 Score=193.61 Aligned_cols=215 Identities=19% Similarity=0.273 Sum_probs=157.4
Q ss_pred cCchHHHHHHHHHHHHhccCCChhHHhHhCCCC---CceEEEEcCCCChHHHHHHHHHHHhc------CCCcEEecccch
Q 004584 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKH---VKGMLLYGPPGTGKTLMARQIGKMLN------GMEPKIVNGPEV 291 (744)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~---~~giLL~GppGtGKT~lar~la~~l~------~~~~~~v~~~~l 291 (744)
+.||++.++++ ++.+..+... ....+.|++. ..+++|+||||||||++|+++|+.+. ...+..++++++
T Consensus 8 ~~Gl~~vk~~i-~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l 85 (261)
T TIGR02881 8 MVGLDEVKALI-KEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADL 85 (261)
T ss_pred hcChHHHHHHH-HHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHh
Confidence 89999999988 6665544332 3334456643 45789999999999999999998862 235667889999
Q ss_pred hcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEE
Q 004584 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLI 371 (744)
Q Consensus 292 ~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI 371 (744)
.++|.|+++..++++|+.+.. +||||||+|.|....+ .......++.|+..|+.. ..++++|
T Consensus 86 ~~~~~g~~~~~~~~~~~~a~~-----------~VL~IDE~~~L~~~~~-----~~~~~~~i~~Ll~~~e~~--~~~~~vi 147 (261)
T TIGR02881 86 VGEYIGHTAQKTREVIKKALG-----------GVLFIDEAYSLARGGE-----KDFGKEAIDTLVKGMEDN--RNEFVLI 147 (261)
T ss_pred hhhhccchHHHHHHHHHhccC-----------CEEEEechhhhccCCc-----cchHHHHHHHHHHHHhcc--CCCEEEE
Confidence 999999999999999987742 3999999999963211 123456788888888753 3566777
Q ss_pred EEeCCCC-----ccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHh---------cCCC
Q 004584 372 GMTNRKD-----MLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAAR---------TKNY 437 (744)
Q Consensus 372 ~~tn~~~-----~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~---------t~g~ 437 (744)
++++..+ .++|++++ ||...|.|+.++.+++.+|++.+++.... .+. +..+..++.. ...-
T Consensus 148 la~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~--~l~-~~a~~~l~~~~~~~~~~~~~~~g 222 (261)
T TIGR02881 148 LAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREY--KLT-EEAKWKLREHLYKVDQLSSREFS 222 (261)
T ss_pred ecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCC--ccC-HHHHHHHHHHHHHHHhccCCCCc
Confidence 6665433 26889998 99999999999999999999988876431 132 3334444332 1224
Q ss_pred ChHHHHHHHHHHHHHHHHhcccc
Q 004584 438 SGAELEGVAKSAVSFALNRQLSM 460 (744)
Q Consensus 438 sg~dl~~l~~~A~~~a~~r~~~~ 460 (744)
+++.+.++++.|......|.+..
T Consensus 223 n~R~~~n~~e~a~~~~~~r~~~~ 245 (261)
T TIGR02881 223 NARYVRNIIEKAIRRQAVRLLDK 245 (261)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcc
Confidence 67889999999988888776654
No 78
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.84 E-value=2.2e-20 Score=216.14 Aligned_cols=205 Identities=20% Similarity=0.256 Sum_probs=162.0
Q ss_pred hcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhh
Q 004584 528 VSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLL 607 (744)
Q Consensus 528 ~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~ 607 (744)
..+...+.++||+||||||||++|+++|.+++.+|+.+.+.+ +...+.+.....++++|..|+...|+||||||+|.+.
T Consensus 179 ~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~-~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~ 257 (644)
T PRK10733 179 KLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSD-FVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVG 257 (644)
T ss_pred hcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHH-hHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhh
Confidence 344566788999999999999999999999999999987655 3333334445578999999999999999999999998
Q ss_pred ccCCCC----cchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccc-cccceEEEcCCCCHHHHHHHHHHcc-
Q 004584 608 EYVPIG----PRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGIC-DAFSVTYHVPTLKTDDAKKVLKQLN- 681 (744)
Q Consensus 608 ~~~~~g----~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~-~rf~~~i~~p~~~~~~~~~Il~~~~- 681 (744)
..++.+ ....+..++.|+..|++... ...++||||||+++.+|++.++ +||++.++||.|+.+++.+|++.+-
T Consensus 258 ~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~-~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 258 RQRGAGLGGGHDEREQTLNQMLVEMDGFEG-NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred hccCCCCCCCchHHHHHHHHHHHhhhcccC-CCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 766432 12234567777777887633 4579999999999999998877 8999999999999999999999752
Q ss_pred ---CCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHHHH
Q 004584 682 ---VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDM 741 (744)
Q Consensus 682 ---~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~~~ 741 (744)
...+.++..+.....+.+.+.+.+++..|+..+.. .+...|+.+||.+|++.+
T Consensus 337 ~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r-------~~~~~i~~~d~~~a~~~v 392 (644)
T PRK10733 337 RVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAAR-------GNKRVVSMVEFEKAKDKI 392 (644)
T ss_pred cCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHH-------cCCCcccHHHHHHHHHHH
Confidence 22234455566666688889999999888877543 477889999999998755
No 79
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=6e-21 Score=203.03 Aligned_cols=244 Identities=21% Similarity=0.246 Sum_probs=167.1
Q ss_pred ccccccccceeecCcchhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccc
Q 004584 496 DLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLH 575 (744)
Q Consensus 496 ~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~ 575 (744)
.+.|..+.|+.+....+.+...++...... ...-+.++.++||.||||+|||++++++|.+++..|..+ ++..+.+++
T Consensus 149 ~v~~~di~gl~~~k~~l~e~vi~p~lr~d~-F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~i-SassLtsK~ 226 (428)
T KOG0740|consen 149 NVGWDDIAGLEDAKQSLKEAVILPLLRPDL-FLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNI-SASSLTSKY 226 (428)
T ss_pred cccccCCcchhhHHHHhhhhhhhcccchHh-hhccccccchhheecCCCCchHHHHHHHHhhhcceEeec-cHHHhhhhc
Confidence 344555555555554444444444333333 334557888999999999999999999999999999998 566688899
Q ss_pred hhhHhhHHHHHHHHHhcCCCeEEEEeccchhhccCCCCc-chhHHHHHHHHHHhccC-CCCCCcEEEEEeCCCCCCCCcc
Q 004584 576 ESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGP-RFSNIISQTMLVLLKRL-PPKGKKLLVIGTTSEVSFLDSV 653 (744)
Q Consensus 576 ~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~~~g~-~~~~~~~~~Ll~~l~~~-~~~~~~v~vi~~tn~~~~l~~~ 653 (744)
.++.++.++.+|.-|+...|+|+||||||+++..+.... ..+.++...++..+... .....+|+||||||+|+.+|.+
T Consensus 227 ~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea 306 (428)
T KOG0740|consen 227 VGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEA 306 (428)
T ss_pred cChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHH
Confidence 888899999999999999999999999999998873322 23444444444333333 2334589999999999999997
Q ss_pred ccccccceEEEcCCCCHHHHHHHHHHc-----cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCc-----cc-cc
Q 004584 654 GICDAFSVTYHVPTLKTDDAKKVLKQL-----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGA-----AE-AI 722 (744)
Q Consensus 654 ~l~~rf~~~i~~p~~~~~~~~~Il~~~-----~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~-----~~-a~ 722 (744)
.++ ||..++++|+|+.+.+..+++++ ..+.+.++..++....+.+.-.+-+++.-|+....... .+ ..
T Consensus 307 ~~R-rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~~~~ 385 (428)
T KOG0740|consen 307 ARR-RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLEFID 385 (428)
T ss_pred HHH-HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhhhhcc
Confidence 766 99999999999999999988873 23444454444444433333333333333332211100 00 11
Q ss_pred ccCCCCcchhhHHHHHHHHh
Q 004584 723 YSGREKIKISHFYDCLQDMV 742 (744)
Q Consensus 723 ~~g~~~It~e~~~~al~~~~ 742 (744)
.++...|+..+|..++..+.
T Consensus 386 ~~~~r~i~~~df~~a~~~i~ 405 (428)
T KOG0740|consen 386 ADKIRPITYPDFKNAFKNIK 405 (428)
T ss_pred hhccCCCCcchHHHHHHhhc
Confidence 23445689999999887553
No 80
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.7e-19 Score=183.51 Aligned_cols=190 Identities=29% Similarity=0.451 Sum_probs=147.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCc
Q 004584 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEI 331 (744)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEi 331 (744)
.+-++||||||||||||+.||.+|... +..+-.+.|.++. ..-.+....|.++|..+..... .-+|||||.
T Consensus 382 apfRNilfyGPPGTGKTm~ArelAr~S-GlDYA~mTGGDVA-PlG~qaVTkiH~lFDWakkS~r-------GLllFIDEA 452 (630)
T KOG0742|consen 382 APFRNILFYGPPGTGKTMFARELARHS-GLDYAIMTGGDVA-PLGAQAVTKIHKLFDWAKKSRR-------GLLLFIDEA 452 (630)
T ss_pred chhhheeeeCCCCCCchHHHHHHHhhc-CCceehhcCCCcc-ccchHHHHHHHHHHHHHhhccc-------ceEEEehhh
Confidence 345789999999999999999999985 5666666666653 2233566789999999987653 359999999
Q ss_pred chhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHH
Q 004584 332 DAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIH 411 (744)
Q Consensus 332 d~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~ 411 (744)
|+++..|...- -++..+..+|.||-... +...+++++.+||+|..+|.++-. |++..|+||+|.+++|..+|..+
T Consensus 453 DAFLceRnkty-mSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lY 527 (630)
T KOG0742|consen 453 DAFLCERNKTY-MSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLY 527 (630)
T ss_pred HHHHHHhchhh-hcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHH
Confidence 99988876543 23667888898886644 455689999999999999999988 99999999999999999999998
Q ss_pred HhcccccCCCC-----------------------CcccHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 004584 412 TNKMKENSFLA-----------------------PDVNLQELAARTKNYSGAELEGVAKSAVSFALN 455 (744)
Q Consensus 412 ~~~~~~~~~~~-----------------------~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~ 455 (744)
+.++-...... .+..+.+.|+.|+||+|++|..|+-.....+..
T Consensus 528 lnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQAavYg 594 (630)
T KOG0742|consen 528 LNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQAAVYG 594 (630)
T ss_pred HHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhc
Confidence 87653111000 111356788999999999999988765544443
No 81
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.82 E-value=1.6e-19 Score=167.35 Aligned_cols=131 Identities=37% Similarity=0.649 Sum_probs=115.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcc
Q 004584 257 MLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICK 336 (744)
Q Consensus 257 iLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~ 336 (744)
|||+||||||||++|+.+|+.+ +.+++.+++.++.+.+.++..+.++++|..+.... .|+||||||+|.+++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l-~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------~~~vl~iDe~d~l~~ 72 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL-GFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSA-------KPCVLFIDEIDKLFP 72 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT-TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTS-------TSEEEEEETGGGTSH
T ss_pred CEEECcCCCCeeHHHHHHHhhc-ccccccccccccccccccccccccccccccccccc-------cceeeeeccchhccc
Confidence 6999999999999999999998 57788899999999999999999999999987764 268999999999998
Q ss_pred cCCCCCCCCccHHHHHHHHHHhccCccCC-CcEEEEEEeCCCCccchhhcCCCccceEEEEcC
Q 004584 337 SRGSTRDGTGVHDSIVNQLLTKIDGVESL-NNVLLIGMTNRKDMLDEALLRPGRLEVQVEISL 398 (744)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~LL~~~d~~~~~-~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~ 398 (744)
+.+ .........++++|+..++..... .+++||++||.++.++++++| +||+..|++|+
T Consensus 73 ~~~--~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 73 KSQ--PSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HCS--TSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccc--cccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 872 223466788999999999987765 569999999999999999998 89999999874
No 82
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.81 E-value=6.3e-19 Score=171.81 Aligned_cols=183 Identities=20% Similarity=0.291 Sum_probs=130.4
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHhhHHHHHHHHHh
Q 004584 512 HKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAY 591 (744)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~ 591 (744)
+++++..+..+.+..+. ...+..|+|||||||+|||++|+.+|++++.+|....++.. ++...+..++....
T Consensus 29 Q~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i-------~k~~dl~~il~~l~ 100 (233)
T PF05496_consen 29 QEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAI-------EKAGDLAAILTNLK 100 (233)
T ss_dssp -HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC---------SCHHHHHHHHT--
T ss_pred cHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhh-------hhHHHHHHHHHhcC
Confidence 45667666666665533 33567899999999999999999999999999987766532 12234566666653
Q ss_pred cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCC-----CC----------CCcEEEEEeCCCCCCCCccccc
Q 004584 592 KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP-----PK----------GKKLLVIGTTSEVSFLDSVGIC 656 (744)
Q Consensus 592 ~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~-----~~----------~~~v~vi~~tn~~~~l~~~~l~ 656 (744)
...||||||||++ +..+++.|+..|+... .. ..+..+||||++..++.+ .++
T Consensus 101 --~~~ILFIDEIHRl----------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~-pLr 167 (233)
T PF05496_consen 101 --EGDILFIDEIHRL----------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSS-PLR 167 (233)
T ss_dssp --TT-EEEECTCCC------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSH-CCC
T ss_pred --CCcEEEEechhhc----------cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccch-hHH
Confidence 3579999999997 4778889998888632 01 125789999999988887 889
Q ss_pred cccceEEEcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhccc
Q 004584 657 DAFSVTYHVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQ 715 (744)
Q Consensus 657 ~rf~~~i~~p~~~~~~~~~Il~~~----~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~ 715 (744)
+||....++..|+.+|+.+|+++. +.-.+++....++..+.|+.|-+..+++++...++
T Consensus 168 dRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvrD~a~ 230 (233)
T PF05496_consen 168 DRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLLRRVRDFAQ 230 (233)
T ss_dssp TTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHHCCCCC
T ss_pred hhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999999974 45667888889999999999999999999987764
No 83
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.81 E-value=5e-19 Score=183.36 Aligned_cols=176 Identities=23% Similarity=0.368 Sum_probs=140.0
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHhhHHHHHHHHHhcC----CCeEEEEeccchhh
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKS----PLSIIILDDIERLL 607 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~----~~~il~iDEid~l~ 607 (744)
....+++||||||||||++|+.+|...+.+|..++.... ..+.++++++.|++. ...|||+||||++
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~--------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf- 116 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS--------GVKDLREIIEEARKNRLLGRRTILFLDEIHRF- 116 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc--------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-
Confidence 456889999999999999999999999999999854432 345799999998543 3589999999996
Q ss_pred ccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCC--CCccccccccceEEEcCCCCHHHHHHHHHHc-----
Q 004584 608 EYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSF--LDSVGICDAFSVTYHVPTLKTDDAKKVLKQL----- 680 (744)
Q Consensus 608 ~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~--l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~----- 680 (744)
+...|..||..++. ..+++||||++... +.+ .+++| ++++.|.+++.+++.+++++.
T Consensus 117 ---------nK~QQD~lLp~vE~-----G~iilIGATTENPsF~ln~-ALlSR-~~vf~lk~L~~~di~~~l~ra~~~~~ 180 (436)
T COG2256 117 ---------NKAQQDALLPHVEN-----GTIILIGATTENPSFELNP-ALLSR-ARVFELKPLSSEDIKKLLKRALLDEE 180 (436)
T ss_pred ---------ChhhhhhhhhhhcC-----CeEEEEeccCCCCCeeecH-HHhhh-hheeeeecCCHHHHHHHHHHHHhhhh
Confidence 47788888887765 47888988877553 344 44455 569999999999999999981
Q ss_pred c------CCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHHHH
Q 004584 681 N------VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDM 741 (744)
Q Consensus 681 ~------~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~~~ 741 (744)
. ...+++....+...+.||.|.+++.+|++...++.. . .++.+.+.+++++-
T Consensus 181 rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~--------~-~~~~~~l~~~l~~~ 238 (436)
T COG2256 181 RGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPD--------E-VLILELLEEILQRR 238 (436)
T ss_pred cCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCC--------c-ccCHHHHHHHHhhh
Confidence 1 224678899999999999999999999999987542 2 45588888888763
No 84
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4.9e-19 Score=186.67 Aligned_cols=204 Identities=21% Similarity=0.296 Sum_probs=146.1
Q ss_pred ccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhc
Q 004584 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (744)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~ 293 (744)
-+|+. +.==.+.+++| .+=+...+...+.|++.|....||.|||||||||||+++.|+|+.|+ ..++.++.++..
T Consensus 198 stF~T--laMd~~~K~~I-~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~-ydIydLeLt~v~- 272 (457)
T KOG0743|consen 198 STFET--LAMDPDLKERI-IDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN-YDIYDLELTEVK- 272 (457)
T ss_pred CCccc--cccChhHHHHH-HHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcC-CceEEeeecccc-
Confidence 45665 22222334444 34445666788999999999999999999999999999999999994 556655554432
Q ss_pred ccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCC---CCc--cHHHHHHHHHHhccCccCCC--
Q 004584 294 KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRD---GTG--VHDSIVNQLLTKIDGVESLN-- 366 (744)
Q Consensus 294 ~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~---~~~--~~~~~~~~LL~~~d~~~~~~-- 366 (744)
.... ++.++..+... +||+|+|||.-+.-++.... ..+ ...-.+..||+.+||+-+..
T Consensus 273 ----~n~d-Lr~LL~~t~~k----------SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ 337 (457)
T KOG0743|consen 273 ----LDSD-LRHLLLATPNK----------SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGD 337 (457)
T ss_pred ----CcHH-HHHHHHhCCCC----------cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCC
Confidence 2222 88888776654 49999999986543322211 001 12246788999999987666
Q ss_pred cEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCC--CChHHHH
Q 004584 367 NVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKN--YSGAELE 443 (744)
Q Consensus 367 ~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g--~sg~dl~ 443 (744)
.-+||.|||.++.|||||+||||+|.+|+++..+..+-..+++.++..-. +..-+.++.+..++ .|+||+.
T Consensus 338 ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~------~h~L~~eie~l~~~~~~tPA~V~ 410 (457)
T KOG0743|consen 338 ERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE------DHRLFDEIERLIEETEVTPAQVA 410 (457)
T ss_pred ceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC------CcchhHHHHHHhhcCccCHHHHH
Confidence 68999999999999999999999999999999999999999888875311 12223444444333 4888874
No 85
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.77 E-value=3e-18 Score=158.79 Aligned_cols=130 Identities=28% Similarity=0.449 Sum_probs=111.0
Q ss_pred eeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHhhHHHHHHHHHhcCC-CeEEEEeccchhhccC-CCCc
Q 004584 537 CLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSP-LSIIILDDIERLLEYV-PIGP 614 (744)
Q Consensus 537 ~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~-~~il~iDEid~l~~~~-~~g~ 614 (744)
+||+||||||||++|+.+|+..+.+++.+++++.. +.+.....+.+.++|.++.+.. |+||||||+|.+.... ....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~ 79 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELI-SSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSS 79 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH-TSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccc-cccccccccccccccccccccccceeeeeccchhcccccccccc
Confidence 68999999999999999999999999999888754 6666777789999999998887 9999999999999876 2344
Q ss_pred chhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCC
Q 004584 615 RFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPT 667 (744)
Q Consensus 615 ~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~ 667 (744)
.....+++.|+..+++......+++||++||.++.+++..+++||+..+++|.
T Consensus 80 ~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 80 SFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred cccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 55678899999999998766678999999999999998543399999999983
No 86
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.76 E-value=1.2e-17 Score=162.86 Aligned_cols=189 Identities=22% Similarity=0.347 Sum_probs=121.1
Q ss_pred ccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhc
Q 004584 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (744)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~ 293 (744)
-+|++ +.|+++.+..+ .-++...... -.+..++|||||||+||||+|+.+|++++ ..+...+++.+-
T Consensus 21 ~~L~e--fiGQ~~l~~~l-~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~-~~~~~~sg~~i~- 87 (233)
T PF05496_consen 21 KSLDE--FIGQEHLKGNL-KILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELG-VNFKITSGPAIE- 87 (233)
T ss_dssp SSCCC--S-S-HHHHHHH-HHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT---EEEEECCC---
T ss_pred CCHHH--ccCcHHHHhhh-HHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccC-CCeEeccchhhh-
Confidence 47888 99999998887 3333221111 12335799999999999999999999994 667777775431
Q ss_pred ccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCcc----------
Q 004584 294 KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE---------- 363 (744)
Q Consensus 294 ~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~---------- 363 (744)
+ ...+..++..... ..||||||||.+.+ .....|+..|+...
T Consensus 88 k-----~~dl~~il~~l~~----------~~ILFIDEIHRlnk-------------~~qe~LlpamEd~~idiiiG~g~~ 139 (233)
T PF05496_consen 88 K-----AGDLAAILTNLKE----------GDILFIDEIHRLNK-------------AQQEILLPAMEDGKIDIIIGKGPN 139 (233)
T ss_dssp S-----CHHHHHHHHT--T----------T-EEEECTCCC--H-------------HHHHHHHHHHHCSEEEEEBSSSSS
T ss_pred h-----HHHHHHHHHhcCC----------CcEEEEechhhccH-------------HHHHHHHHHhccCeEEEEeccccc
Confidence 1 2233444444332 24999999999852 33445666665321
Q ss_pred ------CCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCC
Q 004584 364 ------SLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNY 437 (744)
Q Consensus 364 ------~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~ 437 (744)
...++.+||||++...+.+.|+. ||.....+..++.++..+|++...+.+..+ .++....++|.++.|
T Consensus 140 ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~---i~~~~~~~Ia~rsrG- 213 (233)
T PF05496_consen 140 ARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIE---IDEDAAEEIARRSRG- 213 (233)
T ss_dssp -BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-E---E-HHHHHHHHHCTTT-
T ss_pred cceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCC---cCHHHHHHHHHhcCC-
Confidence 12358999999999999999999 999988999999999999999776665421 234457889999987
Q ss_pred ChHHHHHHHHHH
Q 004584 438 SGAELEGVAKSA 449 (744)
Q Consensus 438 sg~dl~~l~~~A 449 (744)
+++-..++++.+
T Consensus 214 tPRiAnrll~rv 225 (233)
T PF05496_consen 214 TPRIANRLLRRV 225 (233)
T ss_dssp SHHHHHHHHHHH
T ss_pred ChHHHHHHHHHH
Confidence 888777777654
No 87
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.74 E-value=3.3e-17 Score=170.22 Aligned_cols=203 Identities=15% Similarity=0.213 Sum_probs=136.4
Q ss_pred ccceeecCcchhhHHHHHHHHHHHHHhc--CCCCceeeeeecCCCCChhHHHHHHHhhc-------CCCEEEEccccccc
Q 004584 502 LNGMVDCGDRHKHIYQRAMLLVEQVKVS--KGSPLVTCLLEGPSGSGKTALAATAGIDS-------DFPFVKIISAESMI 572 (744)
Q Consensus 502 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Ll~GppG~GKT~la~~~a~~~-------~~~~i~v~~~~~~~ 572 (744)
+.|+..++..+.++..+........... ......+++|+||||||||++|+++|+.+ ..+++.+.+.+ ++
T Consensus 8 ~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~-l~ 86 (261)
T TIGR02881 8 MVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD-LV 86 (261)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH-hh
Confidence 4566666666666666654432222211 12345789999999999999999999753 34677775554 66
Q ss_pred ccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCC----
Q 004584 573 GLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVS---- 648 (744)
Q Consensus 573 g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~---- 648 (744)
|.+.++....++++|+.|. .+||||||+|.|... ..+.+....+..|+..|+.. ...+++|+++...+
T Consensus 87 ~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~--~~~~~~~~~i~~Ll~~~e~~---~~~~~vila~~~~~~~~~ 158 (261)
T TIGR02881 87 GEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG--GEKDFGKEAIDTLVKGMEDN---RNEFVLILAGYSDEMDYF 158 (261)
T ss_pred hhhccchHHHHHHHHHhcc---CCEEEEechhhhccC--CccchHHHHHHHHHHHHhcc---CCCEEEEecCCcchhHHH
Confidence 7666666777889998874 379999999999631 12234556777777777653 34556665554322
Q ss_pred -CCCccccccccceEEEcCCCCHHHHHHHHHHc----cC-CCHHHHHHHHH---------hCCCCcHHHHHHHHHHHHhc
Q 004584 649 -FLDSVGICDAFSVTYHVPTLKTDDAKKVLKQL----NV-FAEEDVDSASE---------ALNDMPIKKLYMLIEMAAQG 713 (744)
Q Consensus 649 -~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~----~~-~~~~~~~~~~~---------~~~~g~ir~l~~~l~~a~~~ 713 (744)
.+++ .+++||...++||+|+.+++.+|+++. +. ++++.+..+.. ....|++|.+.++++.|...
T Consensus 159 ~~~~p-~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~ 237 (261)
T TIGR02881 159 LSLNP-GLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRR 237 (261)
T ss_pred HhcCh-HHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHH
Confidence 1333 677999999999999999999999974 22 33433322211 12279999999999998765
Q ss_pred c
Q 004584 714 E 714 (744)
Q Consensus 714 a 714 (744)
.
T Consensus 238 ~ 238 (261)
T TIGR02881 238 Q 238 (261)
T ss_pred H
Confidence 3
No 88
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.74 E-value=1.9e-17 Score=173.36 Aligned_cols=226 Identities=13% Similarity=0.149 Sum_probs=146.6
Q ss_pred ccceeecCcchhhHHHHHHHHHHHHHhcC---CCCceeeeeecCCCCChhHHHHHHHhhc-------CCCEEEEcccccc
Q 004584 502 LNGMVDCGDRHKHIYQRAMLLVEQVKVSK---GSPLVTCLLEGPSGSGKTALAATAGIDS-------DFPFVKIISAESM 571 (744)
Q Consensus 502 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Ll~GppG~GKT~la~~~a~~~-------~~~~i~v~~~~~~ 571 (744)
+.|+.+++..+.++..+.. ..+.....+ ..+..+++|+||||||||++|+++|... ..+|+.+++++ +
T Consensus 24 l~Gl~~vk~~i~e~~~~~~-~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~-l 101 (284)
T TIGR02880 24 LIGLKPVKTRIREIAALLL-VERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDD-L 101 (284)
T ss_pred ccCHHHHHHHHHHHHHHHH-HHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHH-H
Confidence 4566667666666665532 112222222 2345689999999999999998888654 23688887654 4
Q ss_pred cccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCC--CC
Q 004584 572 IGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEV--SF 649 (744)
Q Consensus 572 ~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~--~~ 649 (744)
++.+.+.....+.++|+.|.. ++|||||++.|...+. ...++..+++.|+..|+.. ..+++||++++.. +.
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~-~~~~~~~~~~~Ll~~le~~---~~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDN-ERDYGQEAIEILLQVMENQ---RDDLVVILAGYKDRMDS 174 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCC-ccchHHHHHHHHHHHHhcC---CCCEEEEEeCCcHHHHH
Confidence 444444444567888888743 8999999999863321 2235677888898888753 2467788777643 32
Q ss_pred C---CccccccccceEEEcCCCCHHHHHHHHHHc----c-CCCHHHHHHHHHh-------CCCCcHHHHHHHHHHHHhcc
Q 004584 650 L---DSVGICDAFSVTYHVPTLKTDDAKKVLKQL----N-VFAEEDVDSASEA-------LNDMPIKKLYMLIEMAAQGE 714 (744)
Q Consensus 650 l---~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~----~-~~~~~~~~~~~~~-------~~~g~ir~l~~~l~~a~~~a 714 (744)
+ ++ .+++||...|+||+|+.+|+..|++++ . .+.++.+..+... -+.||+|.+.++++.+....
T Consensus 175 ~~~~np-~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~ 253 (284)
T TIGR02880 175 FFESNP-GFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQ 253 (284)
T ss_pred HHhhCH-HHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHH
Confidence 2 33 677999999999999999999999974 2 2344333333332 24899999999999886654
Q ss_pred cCCcccc-----cccCCCCcchhhHHHH
Q 004584 715 QGGAAEA-----IYSGREKIKISHFYDC 737 (744)
Q Consensus 715 ~~~~~~a-----~~~g~~~It~e~~~~a 737 (744)
..+..+. ..++-..|+.+|+..+
T Consensus 254 ~~r~~~~~~~~~~~~~~~~~~~~d~~~~ 281 (284)
T TIGR02880 254 ANRLFCDLDRVLDKSDLETIDPEDLLAS 281 (284)
T ss_pred HHHHhcCcCCCCCHHHHhCCCHHHHhhc
Confidence 3221111 1122345677776544
No 89
>CHL00181 cbbX CbbX; Provisional
Probab=99.73 E-value=5.3e-17 Score=169.72 Aligned_cols=204 Identities=13% Similarity=0.165 Sum_probs=137.3
Q ss_pred ccceeecCcchhhHHHHHHHHHHHHHhcC---CCCceeeeeecCCCCChhHHHHHHHhhc-------CCCEEEEcccccc
Q 004584 502 LNGMVDCGDRHKHIYQRAMLLVEQVKVSK---GSPLVTCLLEGPSGSGKTALAATAGIDS-------DFPFVKIISAESM 571 (744)
Q Consensus 502 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Ll~GppG~GKT~la~~~a~~~-------~~~~i~v~~~~~~ 571 (744)
+.|+..++.++.++..+... .+.....+ ..+..+++|+||||||||++|+++|..+ ..+++.++..+ +
T Consensus 25 l~Gl~~vK~~i~e~~~~~~~-~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~-l 102 (287)
T CHL00181 25 LVGLAPVKTRIREIAALLLI-DRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD-L 102 (287)
T ss_pred cCCcHHHHHHHHHHHHHHHH-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH-H
Confidence 46676776666666655322 11111222 2345679999999999999999998763 23577776554 5
Q ss_pred cccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCC--
Q 004584 572 IGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSF-- 649 (744)
Q Consensus 572 ~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~-- 649 (744)
++.+.+++...+.++|+.|. .+||||||+|.|...+. ...++..+++.|+.+|+.. ..+++||++++...+
T Consensus 103 ~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~-~~~~~~e~~~~L~~~me~~---~~~~~vI~ag~~~~~~~ 175 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN-ERDYGSEAIEILLQVMENQ---RDDLVVIFAGYKDRMDK 175 (287)
T ss_pred HHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC-ccchHHHHHHHHHHHHhcC---CCCEEEEEeCCcHHHHH
Confidence 55454444456777888764 37999999999864321 2236678888998888753 246778877764321
Q ss_pred ---CCccccccccceEEEcCCCCHHHHHHHHHHc----c-CCCHHHHHHHHH---h----CCCCcHHHHHHHHHHHHhcc
Q 004584 650 ---LDSVGICDAFSVTYHVPTLKTDDAKKVLKQL----N-VFAEEDVDSASE---A----LNDMPIKKLYMLIEMAAQGE 714 (744)
Q Consensus 650 ---l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~----~-~~~~~~~~~~~~---~----~~~g~ir~l~~~l~~a~~~a 714 (744)
++| .+++||+..++||+|+.+++.+|++++ + ..+++....++. + -..|++|.+.++++.|....
T Consensus 176 ~~~~np-~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~ 254 (287)
T CHL00181 176 FYESNP-GLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMRQ 254 (287)
T ss_pred HHhcCH-HHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHH
Confidence 123 678999999999999999999999974 1 334443333332 2 12688999999998886654
Q ss_pred c
Q 004584 715 Q 715 (744)
Q Consensus 715 ~ 715 (744)
.
T Consensus 255 ~ 255 (287)
T CHL00181 255 A 255 (287)
T ss_pred H
Confidence 3
No 90
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.73 E-value=1.3e-16 Score=158.08 Aligned_cols=202 Identities=16% Similarity=0.249 Sum_probs=155.9
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHhhHHHHHHHHHh
Q 004584 512 HKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAY 591 (744)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~ 591 (744)
.+++++++..+++..+. .....-|+|||||||.|||++|..+|++++.++-...+|.. ++...+..++....
T Consensus 31 Q~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l-------eK~gDlaaiLt~Le 102 (332)
T COG2255 31 QEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL-------EKPGDLAAILTNLE 102 (332)
T ss_pred hHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc-------cChhhHHHHHhcCC
Confidence 45677777777766554 34567899999999999999999999999999876656643 23335677777653
Q ss_pred cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCC--------C-------CCCcEEEEEeCCCCCCCCccccc
Q 004584 592 KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP--------P-------KGKKLLVIGTTSEVSFLDSVGIC 656 (744)
Q Consensus 592 ~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--------~-------~~~~v~vi~~tn~~~~l~~~~l~ 656 (744)
+..|+||||||+|. ..+-..|...|+... + ....+.+||||++..++.. .|+
T Consensus 103 --~~DVLFIDEIHrl~----------~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~-PLr 169 (332)
T COG2255 103 --EGDVLFIDEIHRLS----------PAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTN-PLR 169 (332)
T ss_pred --cCCeEEEehhhhcC----------hhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccc-hhH
Confidence 45899999999985 344555556665521 1 1235789999999998876 889
Q ss_pred cccceEEEcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchh
Q 004584 657 DAFSVTYHVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKIS 732 (744)
Q Consensus 657 ~rf~~~i~~p~~~~~~~~~Il~~~----~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e 732 (744)
.||....++..|+.+|+..|+++. +.-.+++-...+++.+.|..|-+..++.+....|+. .+...|+.+
T Consensus 170 dRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDfa~V-------~~~~~I~~~ 242 (332)
T COG2255 170 DRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRVRDFAQV-------KGDGDIDRD 242 (332)
T ss_pred HhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHHHHHHHHHH-------hcCCcccHH
Confidence 999999999999999999999984 444556666677788899999999999999888764 377789988
Q ss_pred hHHHHHHHH
Q 004584 733 HFYDCLQDM 741 (744)
Q Consensus 733 ~~~~al~~~ 741 (744)
...+|+..+
T Consensus 243 ia~~aL~~L 251 (332)
T COG2255 243 IADKALKML 251 (332)
T ss_pred HHHHHHHHh
Confidence 888888744
No 91
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.4e-16 Score=162.10 Aligned_cols=147 Identities=20% Similarity=0.288 Sum_probs=120.1
Q ss_pred cCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCe-EEEEeccchhh
Q 004584 529 SKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLS-IIILDDIERLL 607 (744)
Q Consensus 529 ~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~-il~iDEid~l~ 607 (744)
....|..++|||||||||||++|+-+|..+|+.|--+.+.+.- .-.......|.++|+.+.++..+ +|||||+|.++
T Consensus 379 ~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA--PlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFL 456 (630)
T KOG0742|consen 379 KHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA--PLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFL 456 (630)
T ss_pred cccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc--ccchHHHHHHHHHHHHHhhcccceEEEehhhHHHH
Confidence 3456889999999999999999999999999998777655531 11223445799999999887655 67999999998
Q ss_pred ccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCCCCHHHHHHHHHH
Q 004584 608 EYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQ 679 (744)
Q Consensus 608 ~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~ 679 (744)
..+.. ..+|+..-.+|..+|-+..+..++++++.+||+|..+|. ...+|++..++||.|..+++..+|..
T Consensus 457 ceRnk-tymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDs-AV~DRide~veFpLPGeEERfkll~l 526 (630)
T KOG0742|consen 457 CERNK-TYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDS-AVNDRIDEVVEFPLPGEEERFKLLNL 526 (630)
T ss_pred HHhch-hhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchhH-HHHhhhhheeecCCCChHHHHHHHHH
Confidence 77643 346677777777777777777788999999999999998 66789999999999999999999986
No 92
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.69 E-value=5.1e-16 Score=157.69 Aligned_cols=182 Identities=21% Similarity=0.316 Sum_probs=134.8
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhcCCC---EEEEcccccccccchhhHhhHHHHHHHHHhc-----CCCeEEEEecc
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFP---FVKIISAESMIGLHESTKCAQIVKVFEDAYK-----SPLSIIILDDI 603 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~~~~---~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~-----~~~~il~iDEi 603 (744)
.+..+++||||||||||++|+.++..+.-+ ||.+.... .+.+.++++|+++.. ....|||||||
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~--------a~t~dvR~ife~aq~~~~l~krkTilFiDEi 231 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN--------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEI 231 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc--------cchHHHHHHHHHHHHHHhhhcceeEEEeHHh
Confidence 456789999999999999999999887665 66663222 345679999998853 35589999999
Q ss_pred chhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCcc-ccccccceEEEcCCCCHHHHHHHHHHc--
Q 004584 604 ERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSV-GICDAFSVTYHVPTLKTDDAKKVLKQL-- 680 (744)
Q Consensus 604 d~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~-~l~~rf~~~i~~p~~~~~~~~~Il~~~-- 680 (744)
+++ ....|.++|-.++ ...+++||+|+....+.-. .|.+| +.++.+.++..+.+..||.+-
T Consensus 232 HRF----------NksQQD~fLP~VE-----~G~I~lIGATTENPSFqln~aLlSR-C~VfvLekL~~n~v~~iL~raia 295 (554)
T KOG2028|consen 232 HRF----------NKSQQDTFLPHVE-----NGDITLIGATTENPSFQLNAALLSR-CRVFVLEKLPVNAVVTILMRAIA 295 (554)
T ss_pred hhh----------hhhhhhcccceec-----cCceEEEecccCCCccchhHHHHhc-cceeEeccCCHHHHHHHHHHHHH
Confidence 985 3455556654332 3578999988775533322 34444 458899999999999999971
Q ss_pred ---------------cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHHH
Q 004584 681 ---------------NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQD 740 (744)
Q Consensus 681 ---------------~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~~ 740 (744)
..+.+..+.+.++..+.|+.|.+++.++|+..+...+.+. +.+..++.+|+++.+..
T Consensus 296 ~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~g~---~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 296 SLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRSGQ---SSRVLLSIDDVKEGLQR 367 (554)
T ss_pred hhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCC---cccceecHHHHHHHHhh
Confidence 0245677888899999999999999999997765543211 24567999999999874
No 93
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.67 E-value=1.9e-15 Score=170.42 Aligned_cols=186 Identities=16% Similarity=0.215 Sum_probs=131.6
Q ss_pred eeeeeecCCCCChhHHHHHHHhhc----------CCCEEEEccccc-------------ccccch---hhHhhHHHHHHH
Q 004584 535 VTCLLEGPSGSGKTALAATAGIDS----------DFPFVKIISAES-------------MIGLHE---STKCAQIVKVFE 588 (744)
Q Consensus 535 ~~~Ll~GppG~GKT~la~~~a~~~----------~~~~i~v~~~~~-------------~~g~~~---~~~~~~i~~if~ 588 (744)
..++++|+||||||++++.+..++ .+.++.++|... +.+... ......+..+|.
T Consensus 782 nvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~ 861 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFN 861 (1164)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHh
Confidence 345799999999999999987543 266788888532 111111 112345666776
Q ss_pred HHh--cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCC---CCccccccccce-E
Q 004584 589 DAY--KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSF---LDSVGICDAFSV-T 662 (744)
Q Consensus 589 ~a~--~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~---l~~~~l~~rf~~-~ 662 (744)
... .....||+|||||.|... .+..|+.++++......+++|||++|..+. +++ .+++||.. .
T Consensus 862 ~L~k~~r~v~IIILDEID~L~kK----------~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdP-RLRSRLg~ee 930 (1164)
T PTZ00112 862 QNKKDNRNVSILIIDEIDYLITK----------TQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIP-RCRSRLAFGR 930 (1164)
T ss_pred hhhcccccceEEEeehHhhhCcc----------HHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhh-hhhhcccccc
Confidence 542 234579999999999621 245566666655444568999999997554 333 55577763 4
Q ss_pred EEcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHh---CCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHH
Q 004584 663 YHVPTLKTDDAKKVLKQL----NVFAEEDVDSASEA---LNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFY 735 (744)
Q Consensus 663 i~~p~~~~~~~~~Il~~~----~~~~~~~~~~~~~~---~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~ 735 (744)
+.|+||+.+|+.+||++. ....++++.++|++ ...||+|+++.+|+.|+..+ +...|+.+|+.
T Consensus 931 IvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEik----------egskVT~eHVr 1000 (1164)
T PTZ00112 931 LVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENK----------RGQKIVPRDIT 1000 (1164)
T ss_pred ccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhc----------CCCccCHHHHH
Confidence 899999999999999973 23456677777776 34899999999999999863 23479999999
Q ss_pred HHHHHH
Q 004584 736 DCLQDM 741 (744)
Q Consensus 736 ~al~~~ 741 (744)
+|+..+
T Consensus 1001 kAleei 1006 (1164)
T PTZ00112 1001 EATNQL 1006 (1164)
T ss_pred HHHHHH
Confidence 998754
No 94
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.66 E-value=2.1e-15 Score=178.96 Aligned_cols=234 Identities=25% Similarity=0.271 Sum_probs=149.2
Q ss_pred CcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccch--------
Q 004584 220 GIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV-------- 291 (744)
Q Consensus 220 ~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l-------- 291 (744)
.+.|+++.++++ .+.+..+... +-.....+||+||||||||++|+++|+.++ .++..++...+
T Consensus 321 ~~~G~~~~k~~i-~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~-~~~~~i~~~~~~~~~~i~g 391 (775)
T TIGR00763 321 DHYGLKKVKERI-LEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALN-RKFVRFSLGGVRDEAEIRG 391 (775)
T ss_pred hcCChHHHHHHH-HHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhc-CCeEEEeCCCcccHHHHcC
Confidence 388999998888 5544433211 112234799999999999999999999995 55555543322
Q ss_pred -hcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccC-----cc--
Q 004584 292 -LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDG-----VE-- 363 (744)
Q Consensus 292 -~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~-----~~-- 363 (744)
...|.|.....+.+.|..+.... .||||||||.+.+.... ...+.|+..+|. +.
T Consensus 392 ~~~~~~g~~~g~i~~~l~~~~~~~---------~villDEidk~~~~~~~---------~~~~aLl~~ld~~~~~~f~d~ 453 (775)
T TIGR00763 392 HRRTYVGAMPGRIIQGLKKAKTKN---------PLFLLDEIDKIGSSFRG---------DPASALLEVLDPEQNNAFSDH 453 (775)
T ss_pred CCCceeCCCCchHHHHHHHhCcCC---------CEEEEechhhcCCccCC---------CHHHHHHHhcCHHhcCccccc
Confidence 13677887778888887765432 28999999999853221 123445555552 11
Q ss_pred ------CCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcc-------cccCCCCCcccHHHH
Q 004584 364 ------SLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKM-------KENSFLAPDVNLQEL 430 (744)
Q Consensus 364 ------~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~-------~~~~~~~~~~~l~~l 430 (744)
..+++++|+|||.++.++++|++ ||. .|+|+.|+.+++.+|++.++... .......++..+..+
T Consensus 454 ~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i 530 (775)
T TIGR00763 454 YLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLL 530 (775)
T ss_pred cCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHH
Confidence 12578999999999999999999 996 78999999999999998876211 111111233345555
Q ss_pred HH-hcCCCChHHHHHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHHh
Q 004584 431 AA-RTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALY 484 (744)
Q Consensus 431 a~-~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~ 484 (744)
++ .+..+..++|++.+...+..+..+....... .........++.+++..-+.
T Consensus 531 ~~~~~~e~g~R~l~r~i~~~~~~~~~~~~~~~~~-~~~~~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 531 IKYYTREAGVRNLERQIEKICRKAAVKLVEQGEK-KKSEAESVVITPDNLKKYLG 584 (775)
T ss_pred HHhcChhcCChHHHHHHHHHHHHHHHHHHhccCc-ccCCcccccCCHHHHHHhcC
Confidence 55 3344556777777776666655443321110 00011235677777665543
No 95
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.66 E-value=3.3e-15 Score=160.62 Aligned_cols=200 Identities=18% Similarity=0.236 Sum_probs=140.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHhhHHHHHHHHHhcC
Q 004584 514 HIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKS 593 (744)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~ 593 (744)
+.++.+.......+.. ..++.++||+||||||||++|+++|++.+..+..+.++.. .....+..++... .
T Consensus 32 ~~~~~l~~~l~~~~~~-~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~-------~~~~~l~~~l~~l--~ 101 (328)
T PRK00080 32 KVKENLKIFIEAAKKR-GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPAL-------EKPGDLAAILTNL--E 101 (328)
T ss_pred HHHHHHHHHHHHHHhc-CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccc-------cChHHHHHHHHhc--c
Confidence 3344444444333322 3567899999999999999999999999988776644422 1112355555554 3
Q ss_pred CCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCC---------------CCCCcEEEEEeCCCCCCCCccccccc
Q 004584 594 PLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP---------------PKGKKLLVIGTTSEVSFLDSVGICDA 658 (744)
Q Consensus 594 ~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~---------------~~~~~v~vi~~tn~~~~l~~~~l~~r 658 (744)
.+++|||||||.+. ....+.|...++... .....+.+|++|+++..+++ .+++|
T Consensus 102 ~~~vl~IDEi~~l~----------~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~-~L~sR 170 (328)
T PRK00080 102 EGDVLFIDEIHRLS----------PVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTS-PLRDR 170 (328)
T ss_pred cCCEEEEecHhhcc----------hHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCH-HHHHh
Confidence 46899999999985 223333444443211 01124678999999888876 57899
Q ss_pred cceEEEcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhH
Q 004584 659 FSVTYHVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHF 734 (744)
Q Consensus 659 f~~~i~~p~~~~~~~~~Il~~~----~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~ 734 (744)
|...++|++|+.+++.+|+++. +...+++....+...++|+.|.+..+++.+...+.. .+...|+.+++
T Consensus 171 f~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~-------~~~~~I~~~~v 243 (328)
T PRK00080 171 FGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVRDFAQV-------KGDGVITKEIA 243 (328)
T ss_pred cCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-------cCCCCCCHHHH
Confidence 9999999999999999999974 345566777777888899999999999887665432 24457999999
Q ss_pred HHHHHHH
Q 004584 735 YDCLQDM 741 (744)
Q Consensus 735 ~~al~~~ 741 (744)
.++++.+
T Consensus 244 ~~~l~~~ 250 (328)
T PRK00080 244 DKALDML 250 (328)
T ss_pred HHHHHHh
Confidence 9988764
No 96
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.66 E-value=3.7e-15 Score=158.98 Aligned_cols=211 Identities=21% Similarity=0.297 Sum_probs=142.5
Q ss_pred cccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhcc
Q 004584 215 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSK 294 (744)
Q Consensus 215 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~ 294 (744)
+|++ +.|.+++++++ +.++......+ ..+.+++|+||||||||++|+++|++++ ..+..+.++....
T Consensus 2 ~~~~--~iG~~~~~~~l-~~~l~~~~~~~--------~~~~~~ll~Gp~G~GKT~la~~ia~~~~-~~~~~~~~~~~~~- 68 (305)
T TIGR00635 2 LLAE--FIGQEKVKEQL-QLFIEAAKMRQ--------EALDHLLLYGPPGLGKTTLAHIIANEMG-VNLKITSGPALEK- 68 (305)
T ss_pred CHHH--HcCHHHHHHHH-HHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHhC-CCEEEeccchhcC-
Confidence 4667 99999999988 66654332211 3456799999999999999999999985 3444444432211
Q ss_pred cccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCcc-----------
Q 004584 295 FVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE----------- 363 (744)
Q Consensus 295 ~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~----------- 363 (744)
...+...+.... .+.+|||||+|.+.+.. ...|+..|+...
T Consensus 69 -----~~~l~~~l~~~~----------~~~vl~iDEi~~l~~~~-------------~e~l~~~~~~~~~~~v~~~~~~~ 120 (305)
T TIGR00635 69 -----PGDLAAILTNLE----------EGDVLFIDEIHRLSPAV-------------EELLYPAMEDFRLDIVIGKGPSA 120 (305)
T ss_pred -----chhHHHHHHhcc----------cCCEEEEehHhhhCHHH-------------HHHhhHHHhhhheeeeeccCccc
Confidence 112223332221 24599999999985321 122333332111
Q ss_pred -----CCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCC
Q 004584 364 -----SLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYS 438 (744)
Q Consensus 364 -----~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~s 438 (744)
...++.+|++||++..+++++++ ||...+.+++|+.+++.+|++..++.... ..++..++.+++.+.|..
T Consensus 121 ~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~---~~~~~al~~ia~~~~G~p 195 (305)
T TIGR00635 121 RSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNV---EIEPEAALEIARRSRGTP 195 (305)
T ss_pred cceeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHHhCCCc
Confidence 12348899999999999999998 99888999999999999999988765331 234456788999998844
Q ss_pred hHHHHHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHHhh
Q 004584 439 GAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYE 485 (744)
Q Consensus 439 g~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~ 485 (744)
+.+..+++.+...|.... ...++.+++..++..
T Consensus 196 -R~~~~ll~~~~~~a~~~~-------------~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 196 -RIANRLLRRVRDFAQVRG-------------QKIINRDIALKALEM 228 (305)
T ss_pred -chHHHHHHHHHHHHHHcC-------------CCCcCHHHHHHHHHH
Confidence 777788887765554321 124778888877765
No 97
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.66 E-value=3.7e-15 Score=160.24 Aligned_cols=216 Identities=19% Similarity=0.262 Sum_probs=146.0
Q ss_pred ccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhc
Q 004584 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (744)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~ 293 (744)
.+|++ +.|.++.++++ ..++...... -.++.++|||||||||||++|+++|++++ ..+..++++.+.
T Consensus 22 ~~~~~--~vG~~~~~~~l-~~~l~~~~~~--------~~~~~~~ll~GppG~GKT~la~~ia~~l~-~~~~~~~~~~~~- 88 (328)
T PRK00080 22 KSLDE--FIGQEKVKENL-KIFIEAAKKR--------GEALDHVLLYGPPGLGKTTLANIIANEMG-VNIRITSGPALE- 88 (328)
T ss_pred CCHHH--hcCcHHHHHHH-HHHHHHHHhc--------CCCCCcEEEECCCCccHHHHHHHHHHHhC-CCeEEEeccccc-
Confidence 37888 99999999888 5554321111 13457899999999999999999999985 444445544321
Q ss_pred ccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhc------cC-cc---
Q 004584 294 KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKI------DG-VE--- 363 (744)
Q Consensus 294 ~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~------d~-~~--- 363 (744)
....+..++.... .+++|||||+|.+.+. ....+..++... +. ..
T Consensus 89 -----~~~~l~~~l~~l~----------~~~vl~IDEi~~l~~~----------~~e~l~~~~e~~~~~~~l~~~~~~~~ 143 (328)
T PRK00080 89 -----KPGDLAAILTNLE----------EGDVLFIDEIHRLSPV----------VEEILYPAMEDFRLDIMIGKGPAARS 143 (328)
T ss_pred -----ChHHHHHHHHhcc----------cCCEEEEecHhhcchH----------HHHHHHHHHHhcceeeeeccCccccc
Confidence 1223444444322 2459999999998521 112222222211 10 00
Q ss_pred ---CCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChH
Q 004584 364 ---SLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGA 440 (744)
Q Consensus 364 ---~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~ 440 (744)
...++.+|++||++..+++++++ ||...+.++.|+.+++.+|++........ ..++..+..+++.+.| +++
T Consensus 144 ~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~---~~~~~~~~~ia~~~~G-~pR 217 (328)
T PRK00080 144 IRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGV---EIDEEGALEIARRSRG-TPR 217 (328)
T ss_pred eeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHcCC-Cch
Confidence 12357899999999999999998 99889999999999999999988776432 2344458899999988 557
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHHhhh
Q 004584 441 ELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (744)
Q Consensus 441 dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~ 486 (744)
.+..+++.+...+..+ ....++.++...++..+
T Consensus 218 ~a~~~l~~~~~~a~~~-------------~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 218 IANRLLRRVRDFAQVK-------------GDGVITKEIADKALDML 250 (328)
T ss_pred HHHHHHHHHHHHHHHc-------------CCCCCCHHHHHHHHHHh
Confidence 7888888776666542 12247777887777654
No 98
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.66 E-value=4.1e-15 Score=147.49 Aligned_cols=196 Identities=21% Similarity=0.346 Sum_probs=144.7
Q ss_pred ccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhc
Q 004584 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (744)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~ 293 (744)
-.|++ ..|.++.++++ +-.+....... ...-++|||||||.||||+|+.+|+++ +..+...+++-+
T Consensus 23 ~~l~e--fiGQ~~vk~~L-~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Em-gvn~k~tsGp~l-- 88 (332)
T COG2255 23 KTLDE--FIGQEKVKEQL-QIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANEL-GVNLKITSGPAL-- 88 (332)
T ss_pred ccHHH--hcChHHHHHHH-HHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHh-cCCeEecccccc--
Confidence 45777 99999988888 43333222221 334579999999999999999999999 477787787766
Q ss_pred ccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCc----------c
Q 004584 294 KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV----------E 363 (744)
Q Consensus 294 ~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~----------~ 363 (744)
+....+-.++...+.+ .||||||||++.+. ..++ |...|+.+ .
T Consensus 89 ----eK~gDlaaiLt~Le~~----------DVLFIDEIHrl~~~----------vEE~---LYpaMEDf~lDI~IG~gp~ 141 (332)
T COG2255 89 ----EKPGDLAAILTNLEEG----------DVLFIDEIHRLSPA----------VEEV---LYPAMEDFRLDIIIGKGPA 141 (332)
T ss_pred ----cChhhHHHHHhcCCcC----------CeEEEehhhhcChh----------HHHH---hhhhhhheeEEEEEccCCc
Confidence 3334455555554443 49999999998632 2222 33344322 1
Q ss_pred ------CCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCC
Q 004584 364 ------SLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNY 437 (744)
Q Consensus 364 ------~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~ 437 (744)
...++.+||||.+..++...|+. ||.....+..++.++..+|++...+.+..+ .++....++|+++.|
T Consensus 142 Arsv~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~---i~~~~a~eIA~rSRG- 215 (332)
T COG2255 142 ARSIRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIE---IDEEAALEIARRSRG- 215 (332)
T ss_pred cceEeccCCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCC---CChHHHHHHHHhccC-
Confidence 12468999999999999999998 999999999999999999999887776532 244567889999998
Q ss_pred ChHHHHHHHHHHHHHHHHh
Q 004584 438 SGAELEGVAKSAVSFALNR 456 (744)
Q Consensus 438 sg~dl~~l~~~A~~~a~~r 456 (744)
+++-..+|+++...+|.-+
T Consensus 216 TPRIAnRLLrRVRDfa~V~ 234 (332)
T COG2255 216 TPRIANRLLRRVRDFAQVK 234 (332)
T ss_pred CcHHHHHHHHHHHHHHHHh
Confidence 8888888888887777643
No 99
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.64 E-value=7.9e-15 Score=156.44 Aligned_cols=183 Identities=16% Similarity=0.216 Sum_probs=129.6
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhhccCC
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVP 611 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~~ 611 (744)
.++.+++|+||||||||++|+++|++.+.++..+.++... ....+...+... ..+.+|||||++.+.+
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~-------~~~~l~~~l~~~--~~~~vl~iDEi~~l~~--- 95 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALE-------KPGDLAAILTNL--EEGDVLFIDEIHRLSP--- 95 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhc-------CchhHHHHHHhc--ccCCEEEEehHhhhCH---
Confidence 4567899999999999999999999998876555433210 111233444433 3457999999999852
Q ss_pred CCcchhHHHHHHHHHHhccCC---------------CCCCcEEEEEeCCCCCCCCccccccccceEEEcCCCCHHHHHHH
Q 004584 612 IGPRFSNIISQTMLVLLKRLP---------------PKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKKV 676 (744)
Q Consensus 612 ~g~~~~~~~~~~Ll~~l~~~~---------------~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~I 676 (744)
..+..|...++... .....+.+|++||++..+++ .+++||...+.|++|+.+++.++
T Consensus 96 -------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~-~l~sR~~~~~~l~~l~~~e~~~i 167 (305)
T TIGR00635 96 -------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTS-PLRDRFGIILRLEFYTVEELAEI 167 (305)
T ss_pred -------HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCH-HHHhhcceEEEeCCCCHHHHHHH
Confidence 23344554443211 11124788999999888876 67889998999999999999999
Q ss_pred HHHc----cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHHHH
Q 004584 677 LKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDM 741 (744)
Q Consensus 677 l~~~----~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~~~ 741 (744)
+++. +...+++....+...++|+.|.+..+++.+...+.. .+...|+.+++.+++..+
T Consensus 168 l~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~-------~~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 168 VSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQV-------RGQKIINRDIALKALEML 229 (305)
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHH-------cCCCCcCHHHHHHHHHHh
Confidence 9863 334455566666777899999999999887655432 234669999999998764
No 100
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.61 E-value=1.9e-14 Score=149.65 Aligned_cols=177 Identities=25% Similarity=0.389 Sum_probs=122.9
Q ss_pred CccccccCcCchHHHHHH--HHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccc
Q 004584 213 EFNLQSLGIGGLSAEFAD--IFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE 290 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~--i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~ 290 (744)
+-++++ +.|+++.+.+ +++++++.- +..+++|||||||||||+|+.+|..++ ..|..++..
T Consensus 20 P~~lde--~vGQ~HLlg~~~~lrr~v~~~-------------~l~SmIl~GPPG~GKTTlA~liA~~~~-~~f~~~sAv- 82 (436)
T COG2256 20 PKSLDE--VVGQEHLLGEGKPLRRAVEAG-------------HLHSMILWGPPGTGKTTLARLIAGTTN-AAFEALSAV- 82 (436)
T ss_pred CCCHHH--hcChHhhhCCCchHHHHHhcC-------------CCceeEEECCCCCCHHHHHHHHHHhhC-CceEEeccc-
Confidence 346777 8888876532 346666433 334799999999999999999999985 555655542
Q ss_pred hhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEE
Q 004584 291 VLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLL 370 (744)
Q Consensus 291 l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~v 370 (744)
-.+.+.++++++.|+..... |. -.||||||||.+.+.. ...||..|+ .+.+++
T Consensus 83 ------~~gvkdlr~i~e~a~~~~~~-gr---~tiLflDEIHRfnK~Q-------------QD~lLp~vE----~G~iil 135 (436)
T COG2256 83 ------TSGVKDLREIIEEARKNRLL-GR---RTILFLDEIHRFNKAQ-------------QDALLPHVE----NGTIIL 135 (436)
T ss_pred ------cccHHHHHHHHHHHHHHHhc-CC---ceEEEEehhhhcChhh-------------hhhhhhhhc----CCeEEE
Confidence 24567899999999765432 11 2599999999986432 234677765 367899
Q ss_pred EEEe--CCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhccc----ccCCCCCcccHHHHHHhcCC
Q 004584 371 IGMT--NRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMK----ENSFLAPDVNLQELAARTKN 436 (744)
Q Consensus 371 I~~t--n~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~----~~~~~~~~~~l~~la~~t~g 436 (744)
||+| |+.-.+.++|++ |.. .+++.+.+.++..++++..+.... ......++..++.++..+.|
T Consensus 136 IGATTENPsF~ln~ALlS--R~~-vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G 204 (436)
T COG2256 136 IGATTENPSFELNPALLS--RAR-VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG 204 (436)
T ss_pred EeccCCCCCeeecHHHhh--hhh-eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc
Confidence 9987 445568999999 543 688999999999999987332221 11111244456777777776
No 101
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=3e-14 Score=155.63 Aligned_cols=172 Identities=16% Similarity=0.179 Sum_probs=123.9
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhcCCC------------------------EEEEcccccccccchhhHhhHHHHHHHH
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDSDFP------------------------FVKIISAESMIGLHESTKCAQIVKVFED 589 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~~~~------------------------~i~v~~~~~~~g~~~~~~~~~i~~if~~ 589 (744)
+..+||+||||||||++|+++|+..++. ++.++.. .....+.++++.+.
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaa-------s~~gVd~IReL~e~ 112 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAA-------SNRGIENIRELRDN 112 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechh-------hcccHHHHHHHHHH
Confidence 3458999999999999999999877542 2222111 11123456666555
Q ss_pred Hh----cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEc
Q 004584 590 AY----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHV 665 (744)
Q Consensus 590 a~----~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~ 665 (744)
+. .+...|+||||+|+|. ...+++|+..|+..+ ..+++|.+|+.+..+.+ .+++|+ ..++|
T Consensus 113 l~~~p~~g~~KV~IIDEah~Ls----------~~A~NALLKtLEEPp---~~viFILaTte~~kI~~-TI~SRC-q~~~f 177 (484)
T PRK14956 113 VKFAPMGGKYKVYIIDEVHMLT----------DQSFNALLKTLEEPP---AHIVFILATTEFHKIPE-TILSRC-QDFIF 177 (484)
T ss_pred HHhhhhcCCCEEEEEechhhcC----------HHHHHHHHHHhhcCC---CceEEEeecCChhhccH-HHHhhh-heeee
Confidence 43 3456899999999984 567788888887643 36777778888877766 455665 58999
Q ss_pred CCCCHHHHHHHHHHc----cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHH
Q 004584 666 PTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCL 738 (744)
Q Consensus 666 p~~~~~~~~~Il~~~----~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al 738 (744)
.+++.+++.+.+++. +...+++....++..+.|++|.++++++.+..... ..||.+++.+.+
T Consensus 178 ~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~~-----------~~it~~~V~~~l 243 (484)
T PRK14956 178 KKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTD-----------SKLTGVKIRKMI 243 (484)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhCC-----------CCcCHHHHHHHh
Confidence 999988887777763 45557778888999999999999999998765421 247877776655
No 102
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.4e-14 Score=153.95 Aligned_cols=193 Identities=18% Similarity=0.289 Sum_probs=134.8
Q ss_pred CCCceeeeeecCCCCChhHHHHHHHhhcCC-----CEEEEcccccc------------ccc--ch-hhHhhHHHHHHHHH
Q 004584 531 GSPLVTCLLEGPSGSGKTALAATAGIDSDF-----PFVKIISAESM------------IGL--HE-STKCAQIVKVFEDA 590 (744)
Q Consensus 531 ~~~~~~~Ll~GppG~GKT~la~~~a~~~~~-----~~i~v~~~~~~------------~g~--~~-~~~~~~i~~if~~a 590 (744)
...|.++++|||||||||++++.++.+..- .+++++|...- ++. .. -...+....+++..
T Consensus 39 ~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~ 118 (366)
T COG1474 39 GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNL 118 (366)
T ss_pred CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHH
Confidence 345567999999999999999999976532 37888887641 110 00 11112223333332
Q ss_pred h-cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCC---CCCccccccccc-eEEEc
Q 004584 591 Y-KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVS---FLDSVGICDAFS-VTYHV 665 (744)
Q Consensus 591 ~-~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~---~l~~~~l~~rf~-~~i~~ 665 (744)
. ....-||+|||+|.|..+.. ..|+.+++.......++.+|+.+|..+ .+|+ .+.++|. ..|.|
T Consensus 119 ~~~~~~~IvvLDEid~L~~~~~----------~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~-rv~s~l~~~~I~F 187 (366)
T COG1474 119 SKKGKTVIVILDEVDALVDKDG----------EVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDP-RVKSSLGPSEIVF 187 (366)
T ss_pred HhcCCeEEEEEcchhhhccccc----------hHHHHHHhhccccceeEEEEEEeccHHHHHHhhh-hhhhccCcceeee
Confidence 2 35668999999999985421 445555554433356889999999876 4444 3445543 56899
Q ss_pred CCCCHHHHHHHHHHc------cCCCHHHHHHHHHhCC---CCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHH
Q 004584 666 PTLKTDDAKKVLKQL------NVFAEEDVDSASEALN---DMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYD 736 (744)
Q Consensus 666 p~~~~~~~~~Il~~~------~~~~~~~~~~~~~~~~---~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~ 736 (744)
|||+.+|+.+|++.. ....++++.++|+... +|++|.++.+++.|++.|+. .+.+.|+.+|+++
T Consensus 188 ~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~-------~~~~~v~~~~v~~ 260 (366)
T COG1474 188 PPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAER-------EGSRKVSEDHVRE 260 (366)
T ss_pred CCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHh-------hCCCCcCHHHHHH
Confidence 999999999999973 3555667777776543 88999999999999999875 4889999999999
Q ss_pred HHHHH
Q 004584 737 CLQDM 741 (744)
Q Consensus 737 al~~~ 741 (744)
|..++
T Consensus 261 a~~~~ 265 (366)
T COG1474 261 AQEEI 265 (366)
T ss_pred HHHHh
Confidence 95543
No 103
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.59 E-value=2.8e-14 Score=156.30 Aligned_cols=196 Identities=15% Similarity=0.217 Sum_probs=127.5
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhcC---------CCEEEEcccccc-------------c--ccchh----hHhhHH
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDSD---------FPFVKIISAESM-------------I--GLHES----TKCAQI 583 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~~---------~~~i~v~~~~~~-------------~--g~~~~----~~~~~i 583 (744)
..+.+++++||||||||++++++++... +.++.+++...- . |.... ...+..
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 117 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVF 117 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHH
Confidence 4557899999999999999999986531 467777765421 0 11000 111223
Q ss_pred HHHHHHHh-cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCcc--ccccccc
Q 004584 584 VKVFEDAY-KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSV--GICDAFS 660 (744)
Q Consensus 584 ~~if~~a~-~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~--~l~~rf~ 660 (744)
..+++... ...+.||+|||+|.|... .+.++..|+.+.+.......++.+|+++|.++..+.. .+.+||.
T Consensus 118 ~~l~~~l~~~~~~~vlvIDE~d~L~~~-------~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~ 190 (365)
T TIGR02928 118 RRLYKELNERGDSLIIVLDEIDYLVGD-------DDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLC 190 (365)
T ss_pred HHHHHHHHhcCCeEEEEECchhhhccC-------CcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCC
Confidence 44444443 345689999999999621 1223333333311111223578899999988753321 3446775
Q ss_pred -eEEEcCCCCHHHHHHHHHHc------cCCCHHHHHHHHHh---CCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcc
Q 004584 661 -VTYHVPTLKTDDAKKVLKQL------NVFAEEDVDSASEA---LNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIK 730 (744)
Q Consensus 661 -~~i~~p~~~~~~~~~Il~~~------~~~~~~~~~~~~~~---~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It 730 (744)
..++|+||+.+|+.+|+++. +...++++.+.+.. .+.|++|.++++++.|...+.. .+...||
T Consensus 191 ~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~-------~~~~~it 263 (365)
T TIGR02928 191 EEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAER-------EGAERVT 263 (365)
T ss_pred cceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-------cCCCCCC
Confidence 67999999999999999863 12234455444433 3379999999999999887644 3667899
Q ss_pred hhhHHHHHHHH
Q 004584 731 ISHFYDCLQDM 741 (744)
Q Consensus 731 ~e~~~~al~~~ 741 (744)
.+|+.+|++.+
T Consensus 264 ~~~v~~a~~~~ 274 (365)
T TIGR02928 264 EDHVEKAQEKI 274 (365)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 104
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3.2e-13 Score=155.83 Aligned_cols=161 Identities=20% Similarity=0.289 Sum_probs=107.5
Q ss_pred cCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhc---------CCCcEEecccch
Q 004584 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---------GMEPKIVNGPEV 291 (744)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~---------~~~~~~v~~~~l 291 (744)
||+.+++++.++ +.+... ..++-+|.|.||+|||.++.-+|+... ...++.++...+
T Consensus 189 igr~deeirRvi-~iL~Rr-------------tk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l 254 (898)
T KOG1051|consen 189 IGRHDEEIRRVI-EILSRK-------------TKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSL 254 (898)
T ss_pred cCCchHHHHHHH-HHHhcc-------------CCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhc
Confidence 677788887773 333222 224568999999999999999998873 112333443333
Q ss_pred hc--ccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEE
Q 004584 292 LS--KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVL 369 (744)
Q Consensus 292 ~~--~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~ 369 (744)
.. +|-|+.+.+++.+.+++.... ...||||||++.+...... .+ .-...+.|-.. -.++.+.
T Consensus 255 ~aGa~~rge~E~rlk~l~k~v~~~~-------~gvILfigelh~lvg~g~~--~~---~~d~~nlLkp~----L~rg~l~ 318 (898)
T KOG1051|consen 255 VAGAKRRGEFEERLKELLKEVESGG-------GGVILFLGELHWLVGSGSN--YG---AIDAANLLKPL----LARGGLW 318 (898)
T ss_pred ccCcccchHHHHHHHHHHHHHhcCC-------CcEEEEecceeeeecCCCc--ch---HHHHHHhhHHH----HhcCCeE
Confidence 32 677899999999999887532 2469999999999855433 11 11222222222 2235599
Q ss_pred EEEEeCCCCc-----cchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhc
Q 004584 370 LIGMTNRKDM-----LDEALLRPGRLEVQVEISLPDENGRLQILQIHTNK 414 (744)
Q Consensus 370 vI~~tn~~~~-----id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~ 414 (744)
+||||..-+. -||++-| ||+ .+.++.|+.+....||.....+
T Consensus 319 ~IGatT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 319 CIGATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred EEecccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhh
Confidence 9999874332 3899999 998 5678999988877777765444
No 105
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=9.5e-14 Score=154.35 Aligned_cols=174 Identities=14% Similarity=0.195 Sum_probs=122.9
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhcCC------------------------CEEEEcccccccccchhhHhhHHHHHHH
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDSDF------------------------PFVKIISAESMIGLHESTKCAQIVKVFE 588 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~~~------------------------~~i~v~~~~~~~g~~~~~~~~~i~~if~ 588 (744)
.+.++||+||||||||++|+++|+..+. .++.++.+. ....+.++++.+
T Consensus 35 l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~-------~~gid~iR~i~~ 107 (472)
T PRK14962 35 ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAAS-------NRGIDEIRKIRD 107 (472)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcc-------cCCHHHHHHHHH
Confidence 4456899999999999999999987654 233332211 112345666666
Q ss_pred HHhc----CCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEE
Q 004584 589 DAYK----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYH 664 (744)
Q Consensus 589 ~a~~----~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~ 664 (744)
.+.. +...||||||+|.|. ...++.|+..++..+ ..+++|++|+.+..+.+ .+++|+ ..++
T Consensus 108 ~~~~~p~~~~~kVvIIDE~h~Lt----------~~a~~~LLk~LE~p~---~~vv~Ilattn~~kl~~-~L~SR~-~vv~ 172 (472)
T PRK14962 108 AVGYRPMEGKYKVYIIDEVHMLT----------KEAFNALLKTLEEPP---SHVVFVLATTNLEKVPP-TIISRC-QVIE 172 (472)
T ss_pred HHhhChhcCCeEEEEEEChHHhH----------HHHHHHHHHHHHhCC---CcEEEEEEeCChHhhhH-HHhcCc-EEEE
Confidence 5542 345799999999984 455677887777643 25566666666666655 566776 4899
Q ss_pred cCCCCHHHHHHHHHHc----cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHH
Q 004584 665 VPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 739 (744)
Q Consensus 665 ~p~~~~~~~~~Il~~~----~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~ 739 (744)
|++++.+++..++++. +...+++....+...++|++|.+++.++.+...+. ..||.+++.+++.
T Consensus 173 f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~-----------~~It~e~V~~~l~ 240 (472)
T PRK14962 173 FRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSE-----------GKITLETVHEALG 240 (472)
T ss_pred ECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHHc
Confidence 9999999998888863 34456667777777889999999999998765421 2389999888775
No 106
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.56 E-value=2.6e-14 Score=146.11 Aligned_cols=219 Identities=19% Similarity=0.266 Sum_probs=153.4
Q ss_pred cccccccceeecCcchhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhc---------CCCEEEEcc
Q 004584 497 LERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS---------DFPFVKIIS 567 (744)
Q Consensus 497 l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~---------~~~~i~v~~ 567 (744)
+.......|++|. ...+.+..+.+.+..+...++.++||+|++|.|||++++.++..+ ..|.+.+..
T Consensus 28 I~~i~~~rWIgY~----~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~ 103 (302)
T PF05621_consen 28 IAYIRADRWIGYP----RAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQM 103 (302)
T ss_pred HHHHhcCCeecCH----HHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEec
Confidence 4445556799997 344444555556667788889999999999999999999998654 246777766
Q ss_pred cccc------------cc--c----chhhHhhHHHHHHHHHhcCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhc
Q 004584 568 AESM------------IG--L----HESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLK 629 (744)
Q Consensus 568 ~~~~------------~g--~----~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~ 629 (744)
|..- +| + +.......+..+|+ ...+.+|+|||++.++. | +..-+..++..|+
T Consensus 104 P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr---~~~vrmLIIDE~H~lLa----G---s~~~qr~~Ln~LK 173 (302)
T PF05621_consen 104 PPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLR---RLGVRMLIIDEFHNLLA----G---SYRKQREFLNALK 173 (302)
T ss_pred CCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHH---HcCCcEEEeechHHHhc----c---cHHHHHHHHHHHH
Confidence 5430 12 1 11122223334444 45678999999999862 2 3444666666666
Q ss_pred cCCCCCC-cEEEEEeCCCCCCCC-ccccccccceEEEcCCCC-HHHHHHHHHHcc---------CCCHHHHHHHHHhCCC
Q 004584 630 RLPPKGK-KLLVIGTTSEVSFLD-SVGICDAFSVTYHVPTLK-TDDAKKVLKQLN---------VFAEEDVDSASEALND 697 (744)
Q Consensus 630 ~~~~~~~-~v~vi~~tn~~~~l~-~~~l~~rf~~~i~~p~~~-~~~~~~Il~~~~---------~~~~~~~~~~~~~~~~ 697 (744)
.+.+... .++.+||......+. ...+.+||. .+.+|+|. .++...++..++ ...+.++...+...++
T Consensus 174 ~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~ 252 (302)
T PF05621_consen 174 FLGNELQIPIVGVGTREAYRALRTDPQLASRFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSE 252 (302)
T ss_pred HHhhccCCCeEEeccHHHHHHhccCHHHHhccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcC
Confidence 6644432 455555554444443 347889998 77889999 778888887642 4567888899999999
Q ss_pred CcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHH
Q 004584 698 MPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDC 737 (744)
Q Consensus 698 g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~a 737 (744)
|.+.++..++..|+.. |+.+|.+.||.+++.++
T Consensus 253 G~iG~l~~ll~~aA~~-------AI~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 253 GLIGELSRLLNAAAIA-------AIRSGEERITREILDKI 285 (302)
T ss_pred CchHHHHHHHHHHHHH-------HHhcCCceecHHHHhhC
Confidence 9999999999999988 46689999999998763
No 107
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=9.8e-14 Score=151.60 Aligned_cols=198 Identities=20% Similarity=0.219 Sum_probs=138.2
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE----e--
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI----V-- 286 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~----v-- 286 (744)
.-+|++ +.|.+..++.+ +.++... +.+..+||+||||||||++|+.+|+.+++..... -
T Consensus 14 P~~f~d--vVGQe~iv~~L-~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 14 PQFFRD--VIHQDLAIGAL-QNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred CCCHHH--HhChHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 457888 99999999887 6666433 2234689999999999999999999997642100 0
Q ss_pred -ccc--------chhc--ccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHH
Q 004584 287 -NGP--------EVLS--KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (744)
Q Consensus 287 -~~~--------~l~~--~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~L 355 (744)
+|. +++. .........+|++.+.+... +..+ ...|+||||+|.+. ....+.|
T Consensus 79 ~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~-p~~g---~~KV~IIDEah~Ls-------------~~A~NAL 141 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFA-PMGG---KYKVYIIDEVHMLT-------------DQSFNAL 141 (484)
T ss_pred cHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhh-hhcC---CCEEEEEechhhcC-------------HHHHHHH
Confidence 011 1110 00112234566666655432 2212 24699999999884 3467778
Q ss_pred HHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcC
Q 004584 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (744)
Q Consensus 356 L~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~ 435 (744)
|..|+. +..++++|.+|+.++.|.+++++ |+. .+.|..++.++..+.++..+.... ...++..+..+++.++
T Consensus 142 LKtLEE--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Eg---i~~e~eAL~~Ia~~S~ 213 (484)
T PRK14956 142 LKTLEE--PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIEN---VQYDQEGLFWIAKKGD 213 (484)
T ss_pred HHHhhc--CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcC
Confidence 888873 55689999999999999999999 875 688999998888888887776533 1235556888999988
Q ss_pred CCChHHHHHHHHHHHH
Q 004584 436 NYSGAELEGVAKSAVS 451 (744)
Q Consensus 436 g~sg~dl~~l~~~A~~ 451 (744)
| +.++..++++.+..
T Consensus 214 G-d~RdAL~lLeq~i~ 228 (484)
T PRK14956 214 G-SVRDMLSFMEQAIV 228 (484)
T ss_pred C-hHHHHHHHHHHHHH
Confidence 7 78888888877653
No 108
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.56 E-value=1.9e-13 Score=149.69 Aligned_cols=230 Identities=21% Similarity=0.253 Sum_probs=144.3
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcC--------CCc
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG--------MEP 283 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~--------~~~ 283 (744)
+++..++ +.|.++++++| ..++...+. | ..+.+++++||||||||++++++++.+.. ..+
T Consensus 10 ~~~~p~~--l~gRe~e~~~l-~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~ 77 (365)
T TIGR02928 10 PDYVPDR--IVHRDEQIEEL-AKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVT 77 (365)
T ss_pred CCCCCCC--CCCcHHHHHHH-HHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEE
Confidence 3444455 99999999999 455432211 1 33457999999999999999999987631 234
Q ss_pred EEecccchhcc----------cc--c--------chHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCC
Q 004584 284 KIVNGPEVLSK----------FV--G--------ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRD 343 (744)
Q Consensus 284 ~~v~~~~l~~~----------~~--g--------~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~ 343 (744)
.+++|....+. .. | ...+....+++..... ..+.||+|||+|.+...
T Consensus 78 v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~vlvIDE~d~L~~~------ 144 (365)
T TIGR02928 78 VYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNER-------GDSLIIVLDEIDYLVGD------ 144 (365)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhc-------CCeEEEEECchhhhccC------
Confidence 55676543221 00 0 0112223333333211 23679999999999721
Q ss_pred CCccHHHHHHHHHHhccCcc-CCCcEEEEEEeCCCC---ccchhhcCCCccc-eEEEEcCCCHHHHHHHHHHHHhccccc
Q 004584 344 GTGVHDSIVNQLLTKIDGVE-SLNNVLLIGMTNRKD---MLDEALLRPGRLE-VQVEISLPDENGRLQILQIHTNKMKEN 418 (744)
Q Consensus 344 ~~~~~~~~~~~LL~~~d~~~-~~~~v~vI~~tn~~~---~id~al~r~gRf~-~~i~i~~Pd~~~r~~Il~~~~~~~~~~ 418 (744)
.+.++.+|+...+... ...++.+|+++|.++ .+++.+.+ ||. ..+.|++++.++..+|++.+++.....
T Consensus 145 ----~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~ 218 (365)
T TIGR02928 145 ----DDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYD 218 (365)
T ss_pred ----CcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccC
Confidence 1235556655422111 225799999999886 47888877 664 579999999999999999887632111
Q ss_pred CCCCCcccHHHHH---HhcCCCChHHHHHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHHhhhc
Q 004584 419 SFLAPDVNLQELA---ARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIV 487 (744)
Q Consensus 419 ~~~~~~~~l~~la---~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ 487 (744)
..+ ++..++.++ ..+.| ..+....+|+.|...|..+. ...|+.+|+..|+..+.
T Consensus 219 ~~~-~~~~l~~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~~-------------~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 219 GVL-DDGVIPLCAALAAQEHG-DARKAIDLLRVAGEIAEREG-------------AERVTEDHVEKAQEKIE 275 (365)
T ss_pred CCC-ChhHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC-------------CCCCCHHHHHHHHHHHH
Confidence 112 233334443 34445 45556678888888776542 23589999998887763
No 109
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.56 E-value=6.1e-14 Score=166.55 Aligned_cols=188 Identities=16% Similarity=0.233 Sum_probs=124.1
Q ss_pred hHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEccccc-----ccc---cchhhHhhHHHH
Q 004584 514 HIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES-----MIG---LHESTKCAQIVK 585 (744)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~-----~~g---~~~~~~~~~i~~ 585 (744)
++++.+..+.......+.....++||+||||||||++|+++|..++.+|+++..... +.| .+.+.....+.+
T Consensus 327 ~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~ 406 (775)
T TIGR00763 327 KVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQ 406 (775)
T ss_pred HHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHH
Confidence 444444443332222222334579999999999999999999999999998854321 111 112222335677
Q ss_pred HHHHHhcCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhcc-----C-------CCCCCcEEEEEeCCCCCCCCcc
Q 004584 586 VFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKR-----L-------PPKGKKLLVIGTTSEVSFLDSV 653 (744)
Q Consensus 586 if~~a~~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~-----~-------~~~~~~v~vi~~tn~~~~l~~~ 653 (744)
.|..+....| ||||||||++..... | ...++|+..|+. + +....++++|+|||..+.+++
T Consensus 407 ~l~~~~~~~~-villDEidk~~~~~~-~-----~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~- 478 (775)
T TIGR00763 407 GLKKAKTKNP-LFLLDEIDKIGSSFR-G-----DPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPR- 478 (775)
T ss_pred HHHHhCcCCC-EEEEechhhcCCccC-C-----CHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCH-
Confidence 8888765554 899999999974221 1 123455555542 1 111247899999999998887
Q ss_pred ccccccceEEEcCCCCHHHHHHHHHHc---------c------CCCHHHHHHHHHhCC-CCcHHHHHHHHHHH
Q 004584 654 GICDAFSVTYHVPTLKTDDAKKVLKQL---------N------VFAEEDVDSASEALN-DMPIKKLYMLIEMA 710 (744)
Q Consensus 654 ~l~~rf~~~i~~p~~~~~~~~~Il~~~---------~------~~~~~~~~~~~~~~~-~g~ir~l~~~l~~a 710 (744)
.+++||. .|+|++|+.+++..|++++ + .++++.+..++..++ ..++|.+...++..
T Consensus 479 ~L~~R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~ 550 (775)
T TIGR00763 479 PLLDRME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIEKI 550 (775)
T ss_pred HHhCCee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHHHH
Confidence 5668885 7899999999999999752 1 255667777777666 56777766655443
No 110
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.55 E-value=4.8e-14 Score=166.59 Aligned_cols=198 Identities=19% Similarity=0.222 Sum_probs=135.3
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhc----------CCCEEEEcccccccc-cchhhHhhHHHHHHHHHhcCCCeEEEEe
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDS----------DFPFVKIISAESMIG-LHESTKCAQIVKVFEDAYKSPLSIIILD 601 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~----------~~~~i~v~~~~~~~g-~~~~~~~~~i~~if~~a~~~~~~il~iD 601 (744)
...+++|+||||||||++|+.+|... +..++.++....+.| .+.++.++.++++|+.+....++|||||
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiD 281 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFID 281 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEe
Confidence 45689999999999999999999875 566777766554444 3455667789999999977778999999
Q ss_pred ccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCC-----CCccccccccceEEEcCCCCHHHHHHH
Q 004584 602 DIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSF-----LDSVGICDAFSVTYHVPTLKTDDAKKV 676 (744)
Q Consensus 602 Eid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~-----l~~~~l~~rf~~~i~~p~~~~~~~~~I 676 (744)
|+|.|.+.+..+. .+..+.+.|...|.+ ..+.+||+||..+. .|+ .+.+||. .++|++|+.+++..|
T Consensus 282 Eih~l~~~g~~~~-~~~~~~~~L~~~l~~-----g~i~~IgaTt~~e~~~~~~~d~-al~rRf~-~i~v~~p~~~~~~~i 353 (731)
T TIGR02639 282 EIHTIVGAGATSG-GSMDASNLLKPALSS-----GKLRCIGSTTYEEYKNHFEKDR-ALSRRFQ-KIDVGEPSIEETVKI 353 (731)
T ss_pred cHHHHhccCCCCC-ccHHHHHHHHHHHhC-----CCeEEEEecCHHHHHHHhhhhH-HHHHhCc-eEEeCCCCHHHHHHH
Confidence 9999986542111 122344555555532 47899999997442 344 6677997 799999999999999
Q ss_pred HHHc--------c-CCCHHHHHHHHHhCC-----CCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHHHH
Q 004584 677 LKQL--------N-VFAEEDVDSASEALN-----DMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDM 741 (744)
Q Consensus 677 l~~~--------~-~~~~~~~~~~~~~~~-----~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~~~ 741 (744)
|+.. + .++++.+..++.... ..-..+++.+++.|....... ........|+.+|+.+++...
T Consensus 354 l~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~---~~~~~~~~v~~~~i~~~i~~~ 429 (731)
T TIGR02639 354 LKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLR---PKAKKKANVSVKDIENVVAKM 429 (731)
T ss_pred HHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcC---cccccccccCHHHHHHHHHHH
Confidence 9952 2 244544444433222 233566788888776532210 000123459999999988754
No 111
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.55 E-value=1.4e-13 Score=152.50 Aligned_cols=171 Identities=23% Similarity=0.374 Sum_probs=126.2
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHhhHHHHHHHHHh----cCCCeEEEEeccchhhc
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAY----KSPLSIIILDDIERLLE 608 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~----~~~~~il~iDEid~l~~ 608 (744)
...+++|+||||||||++|+++|+..+.+|+.++.... ....++++++.+. .....+|||||+|++.
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~--------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~- 105 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS--------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN- 105 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC-
Confidence 45689999999999999999999999999998865432 1224566666653 2356899999999974
Q ss_pred cCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCC--CCCCccccccccceEEEcCCCCHHHHHHHHHHc------
Q 004584 609 YVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEV--SFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQL------ 680 (744)
Q Consensus 609 ~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~--~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~------ 680 (744)
...++.|+..++. ..+++|++|+.. ..+++ .+++|+ ..+.|++++.+++..++++.
T Consensus 106 ---------~~~q~~LL~~le~-----~~iilI~att~n~~~~l~~-aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~ 169 (413)
T PRK13342 106 ---------KAQQDALLPHVED-----GTITLIGATTENPSFEVNP-ALLSRA-QVFELKPLSEEDIEQLLKRALEDKER 169 (413)
T ss_pred ---------HHHHHHHHHHhhc-----CcEEEEEeCCCChhhhccH-HHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhc
Confidence 4566777777654 356777776543 24444 566777 68999999999999999873
Q ss_pred cC-CCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHHH
Q 004584 681 NV-FAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQD 740 (744)
Q Consensus 681 ~~-~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~~ 740 (744)
+. ..+++....+...++|++|+++++++.+... ...|+.+++.+++..
T Consensus 170 ~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~------------~~~It~~~v~~~~~~ 218 (413)
T PRK13342 170 GLVELDDEALDALARLANGDARRALNLLELAALG------------VDSITLELLEEALQK 218 (413)
T ss_pred CCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHc------------cCCCCHHHHHHHHhh
Confidence 11 3455666677777899999999999998764 134888888777764
No 112
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=4.9e-14 Score=149.19 Aligned_cols=160 Identities=15% Similarity=0.160 Sum_probs=121.7
Q ss_pred hhhHHHHHHHHHH---HHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHhhHHHHHHH
Q 004584 512 HKHIYQRAMLLVE---QVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFE 588 (744)
Q Consensus 512 ~~~~~~~~~~~~~---~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~ 588 (744)
.+++++.+..+.. ..++.++.-.++-|||||||||||+++.|+|+.+++...-+.-.+. .....+++++.
T Consensus 210 K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v-------~~n~dLr~LL~ 282 (457)
T KOG0743|consen 210 KERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEV-------KLDSDLRHLLL 282 (457)
T ss_pred HHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccc-------cCcHHHHHHHH
Confidence 4556666655553 4566677777899999999999999999999999988766543321 11124788887
Q ss_pred HHhcCCCeEEEEeccchhhccCCCCc--------chhHHHHHHHHHHhccCCCCC--CcEEEEEeCCCCCCCCccccc-c
Q 004584 589 DAYKSPLSIIILDDIERLLEYVPIGP--------RFSNIISQTMLVLLKRLPPKG--KKLLVIGTTSEVSFLDSVGIC-D 657 (744)
Q Consensus 589 ~a~~~~~~il~iDEid~l~~~~~~g~--------~~~~~~~~~Ll~~l~~~~~~~--~~v~vi~~tn~~~~l~~~~l~-~ 657 (744)
.+ ...+||+|.+||+-+..+.... ..+...++.||.+++++.... .++ ||-|||..+.|||+.+| |
T Consensus 283 ~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERI-ivFTTNh~EkLDPALlRpG 359 (457)
T KOG0743|consen 283 AT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERI-IVFTTNHKEKLDPALLRPG 359 (457)
T ss_pred hC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceE-EEEecCChhhcCHhhcCCC
Confidence 75 4568999999999876432111 124567889999999986543 454 55599999999999888 9
Q ss_pred ccceEEEcCCCCHHHHHHHHHHcc
Q 004584 658 AFSVTYHVPTLKTDDAKKVLKQLN 681 (744)
Q Consensus 658 rf~~~i~~p~~~~~~~~~Il~~~~ 681 (744)
|.|.+|++..++.+++..+++++-
T Consensus 360 RmDmhI~mgyCtf~~fK~La~nYL 383 (457)
T KOG0743|consen 360 RMDMHIYMGYCTFEAFKTLASNYL 383 (457)
T ss_pred cceeEEEcCCCCHHHHHHHHHHhc
Confidence 999999999999999999999863
No 113
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.9e-13 Score=154.42 Aligned_cols=158 Identities=16% Similarity=0.227 Sum_probs=115.5
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhcCCC------------------------EEEEcccccccccchhhHhhHHHHHHHH
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDSDFP------------------------FVKIISAESMIGLHESTKCAQIVKVFED 589 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~~~~------------------------~i~v~~~~~~~g~~~~~~~~~i~~if~~ 589 (744)
...+||+||+|||||++|+++|+..++. ++.++.. .....+.++++++.
T Consensus 38 ~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAa-------s~rgVDdIReLIe~ 110 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAA-------SNRGVDEMAALLER 110 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEeccc-------ccccHHHHHHHHHH
Confidence 4456999999999999999999876531 2222111 11234467777776
Q ss_pred Hh----cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEc
Q 004584 590 AY----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHV 665 (744)
Q Consensus 590 a~----~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~ 665 (744)
+. .....|+||||+|.|. ...++.|+..|+..+. .+.||.+||.+..+.+ .+++|+ ..|+|
T Consensus 111 a~~~P~~gr~KVIIIDEah~LT----------~~A~NALLKtLEEPP~---~v~FILaTtd~~KIp~-TIrSRC-q~f~F 175 (830)
T PRK07003 111 AVYAPVDARFKVYMIDEVHMLT----------NHAFNAMLKTLEEPPP---HVKFILATTDPQKIPV-TVLSRC-LQFNL 175 (830)
T ss_pred HHhccccCCceEEEEeChhhCC----------HHHHHHHHHHHHhcCC---CeEEEEEECChhhccc-hhhhhe-EEEec
Confidence 54 2456899999999984 4567778888877533 5667777777776654 455665 69999
Q ss_pred CCCCHHHHHHHHHH----ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhc
Q 004584 666 PTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQG 713 (744)
Q Consensus 666 p~~~~~~~~~Il~~----~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~ 713 (744)
.+++.+++.+.|++ .+...+++....+.+.+.|++|.++++++.+...
T Consensus 176 k~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~ 227 (830)
T PRK07003 176 KQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAY 227 (830)
T ss_pred CCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999888777765 3445677888888999999999999998887755
No 114
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.54 E-value=2.3e-13 Score=150.66 Aligned_cols=195 Identities=21% Similarity=0.248 Sum_probs=129.6
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhc-----CCCEEEEcccccc-------------cccch---h-hHhhHHHHHHHH
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDS-----DFPFVKIISAESM-------------IGLHE---S-TKCAQIVKVFED 589 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~-----~~~~i~v~~~~~~-------------~g~~~---~-~~~~~i~~if~~ 589 (744)
..+.+++++||||||||++++.++... +..++.+++...- .+... + ...+.+..+.+.
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 132 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEY 132 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHH
Confidence 445679999999999999999998754 5678888775420 11000 0 111222333333
Q ss_pred Hh-cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCc--ccccccc-ceEEEc
Q 004584 590 AY-KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDS--VGICDAF-SVTYHV 665 (744)
Q Consensus 590 a~-~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~--~~l~~rf-~~~i~~ 665 (744)
.. ...+.||+|||+|.+.... ....+..|+..+...+ ..++.+|+++|..+..+. ..+.+|| ...++|
T Consensus 133 l~~~~~~~viviDE~d~l~~~~------~~~~l~~l~~~~~~~~--~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f 204 (394)
T PRK00411 133 LDERDRVLIVALDDINYLFEKE------GNDVLYSLLRAHEEYP--GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYF 204 (394)
T ss_pred HHhcCCEEEEEECCHhHhhccC------CchHHHHHHHhhhccC--CCeEEEEEEECCcchhhhcCHHHHhcCCcceeec
Confidence 32 2456899999999986211 1234555555554432 237888888887654332 1344555 367899
Q ss_pred CCCCHHHHHHHHHHc------cCCCHHHHHHHHHhCC---CCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHH
Q 004584 666 PTLKTDDAKKVLKQL------NVFAEEDVDSASEALN---DMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYD 736 (744)
Q Consensus 666 p~~~~~~~~~Il~~~------~~~~~~~~~~~~~~~~---~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~ 736 (744)
+||+.+++.+|++.. ....+++..+.+++.. .|++|.++.++..|...+.. .+...|+.+|+.+
T Consensus 205 ~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~-------~~~~~I~~~~v~~ 277 (394)
T PRK00411 205 PPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER-------EGSRKVTEEDVRK 277 (394)
T ss_pred CCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-------cCCCCcCHHHHHH
Confidence 999999999999863 1233455556665554 89999999999998887654 3677899999999
Q ss_pred HHHHH
Q 004584 737 CLQDM 741 (744)
Q Consensus 737 al~~~ 741 (744)
|++++
T Consensus 278 a~~~~ 282 (394)
T PRK00411 278 AYEKS 282 (394)
T ss_pred HHHHH
Confidence 99865
No 115
>PF02359 CDC48_N: Cell division protein 48 (CDC48), N-terminal domain; InterPro: IPR003338 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The VAT protein of the archaebacterium Thermoplasma acidophilum, like all other members of the Cdc48/p97 family of AAA ATPases, has two ATPase domains and a 185-residue amino-terminal substrate-recognition domain, VAT-N. VAT shows activity in protein folding and unfolding and thus shares the common function of these ATPases in disassembly and/or degradation of protein complexes. VAT-N is composed of two equally sized subdomains. The amino-terminal subdomain VAT-Nn forms a double-psi beta-barrel whose pseudo-twofold symmetry is mirrored by an internal sequence repeat of 42 residues. The carboxy-terminal subdomain VAT-Nc forms a novel six-stranded beta-clam fold []. Together, VAT-Nn and VAT-Nc form a kidney-shaped structure, in close agreement with results from electron microscopy. VAT-Nn is related to numerous proteins including prokaryotic transcription factors, metabolic enzymes, the protease cofactors UFD1 and PrlF, and aspartic proteinases. ; GO: 0005524 ATP binding; PDB: 1CZ4_A 1CZ5_A 3CF3_C 3CF1_A 3CF2_A 1S3S_D 1E32_A 1R7R_A 2PJH_B 1CR5_B ....
Probab=99.54 E-value=2.6e-14 Score=121.52 Aligned_cols=81 Identities=31% Similarity=0.454 Sum_probs=65.8
Q ss_pred eEEEeecCCcccccccEEEeChhhhcccCC-CCCCceEEEEeCCc-E---EEEEeeCCCCCCCcEeecHHHHhccCccCC
Q 004584 14 TMNVINTPSADLALTNLAYCSPADLLNFRV-PNSNLFLASVAGDS-F---VLSLASHPSVNKGQIALNSVQRRHAKVSTG 88 (744)
Q Consensus 14 ~l~v~~~p~~~~a~tn~v~vs~~~~~~l~~-~g~~~~~v~i~~~~-~---v~~~~~~~~~~~~~i~~~~~~r~~~~~~~~ 88 (744)
+|+|.++|+++++++||||+||++|.+|++ +| +++++.|++ + |+...+++. ++|.|+||..+|+|+++++|
T Consensus 1 ~L~V~~~p~~~~~~~n~v~v~~~~m~~l~l~~g---d~v~i~g~~~tv~~v~~~~~~~~-~~g~I~l~~~~R~n~~v~ig 76 (87)
T PF02359_consen 1 RLRVAEAPSDEDAGTNCVRVSPEDMEELGLFPG---DVVLISGKRKTVAFVFPDRPDDS-PPGVIRLSGIQRKNAGVSIG 76 (87)
T ss_dssp EEEEEE-SSSHHHCTTEEEEEHHHHHCTTT-TT---EEEEEETTTEEEEEEEEECCSTT-CTTEEEE-HHHHHHCT--TT
T ss_pred CcEEEeCCChHhCCCCEEEEcHHHHHHcCCCCc---cEEEEeCCceEEEEEEECCCCCC-CCCEEEECHHHHhhCCcCCC
Confidence 599999999999999999999999999998 45 789988765 3 443334333 79999999999999999999
Q ss_pred CeEEEEEeCC
Q 004584 89 DHVSLNRFIP 98 (744)
Q Consensus 89 ~~v~~~~~~~ 98 (744)
|.|+|+++++
T Consensus 77 d~V~V~~~~~ 86 (87)
T PF02359_consen 77 DRVTVRPYDP 86 (87)
T ss_dssp SEEEEEEETT
T ss_pred CEEEEEECCC
Confidence 9999999974
No 116
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=3.5e-13 Score=149.81 Aligned_cols=191 Identities=17% Similarity=0.184 Sum_probs=130.7
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCC----------
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME---------- 282 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~---------- 282 (744)
+-+|++ |.|.++..+.+ +.++... +.+.++|||||||||||++|+++|+.+++..
T Consensus 10 P~~~~d--ivGq~~i~~~L-~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 10 PKTFSE--VVGQDHVKKLI-INALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred CCCHHH--ccCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 457888 99999887666 6665433 2345689999999999999999999986531
Q ss_pred -------------cEEecccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHH
Q 004584 283 -------------PKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHD 349 (744)
Q Consensus 283 -------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~ 349 (744)
+..++++ ....-..+|++.+.+.. .|.. +...||||||+|.+. .
T Consensus 75 ~~c~~i~~g~~~dv~el~aa------~~~gid~iR~i~~~~~~-~p~~---~~~kVvIIDE~h~Lt-------------~ 131 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAA------SNRGIDEIRKIRDAVGY-RPME---GKYKVYIIDEVHMLT-------------K 131 (472)
T ss_pred HHHHHHhcCCCCccEEEeCc------ccCCHHHHHHHHHHHhh-Chhc---CCeEEEEEEChHHhH-------------H
Confidence 1112211 11223456666655543 2221 235699999999884 2
Q ss_pred HHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHH
Q 004584 350 SIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQE 429 (744)
Q Consensus 350 ~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~ 429 (744)
...+.|+..++. ..+.+++|++|+.+..+++++++ |+. .++|.+++.++...+++..++.... ..++..+..
T Consensus 132 ~a~~~LLk~LE~--p~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi---~i~~eal~~ 203 (472)
T PRK14962 132 EAFNALLKTLEE--PPSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGI---EIDREALSF 203 (472)
T ss_pred HHHHHHHHHHHh--CCCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCC---CCCHHHHHH
Confidence 345667777774 34568888888888899999998 775 7999999999999999887754321 234556888
Q ss_pred HHHhcCCCChHHHHHHHHHHH
Q 004584 430 LAARTKNYSGAELEGVAKSAV 450 (744)
Q Consensus 430 la~~t~g~sg~dl~~l~~~A~ 450 (744)
+++.+.| ..+.+.+.++.+.
T Consensus 204 Ia~~s~G-dlR~aln~Le~l~ 223 (472)
T PRK14962 204 IAKRASG-GLRDALTMLEQVW 223 (472)
T ss_pred HHHHhCC-CHHHHHHHHHHHH
Confidence 8888765 5566666665544
No 117
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=2.9e-13 Score=155.84 Aligned_cols=165 Identities=15% Similarity=0.209 Sum_probs=113.9
Q ss_pred cee-eeeecCCCCChhHHHHHHHhhcCCCEE-EE----cc-----------cccc-cccchhhHhhHHHHHHHHHh----
Q 004584 534 LVT-CLLEGPSGSGKTALAATAGIDSDFPFV-KI----IS-----------AESM-IGLHESTKCAQIVKVFEDAY---- 591 (744)
Q Consensus 534 ~~~-~Ll~GppG~GKT~la~~~a~~~~~~~i-~v----~~-----------~~~~-~g~~~~~~~~~i~~if~~a~---- 591 (744)
..| +||+||||||||++|+++|+..++... .. .| +..+ +......+...++++.+.+.
T Consensus 37 l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~ 116 (944)
T PRK14949 37 LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPS 116 (944)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhh
Confidence 345 589999999999999999988765310 00 00 0000 00011123445666666553
Q ss_pred cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCCCCHH
Q 004584 592 KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTD 671 (744)
Q Consensus 592 ~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~~~~ 671 (744)
.+...|+||||+|+|. ...+++|+..|+..+. .+.+|.+|+.+..+-+ .+++| +.+++|.+++.+
T Consensus 117 ~gk~KViIIDEAh~LT----------~eAqNALLKtLEEPP~---~vrFILaTTe~~kLl~-TIlSR-Cq~f~fkpLs~e 181 (944)
T PRK14949 117 RGRFKVYLIDEVHMLS----------RSSFNALLKTLEEPPE---HVKFLLATTDPQKLPV-TVLSR-CLQFNLKSLTQD 181 (944)
T ss_pred cCCcEEEEEechHhcC----------HHHHHHHHHHHhccCC---CeEEEEECCCchhchH-HHHHh-heEEeCCCCCHH
Confidence 3456899999999984 6688889888887543 5556666777766654 44455 478999999999
Q ss_pred HHHHHHHH----ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhc
Q 004584 672 DAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQG 713 (744)
Q Consensus 672 ~~~~Il~~----~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~ 713 (744)
++...|++ .+...+++...++...+.|++|.++++++.+...
T Consensus 182 EI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQala~ 227 (944)
T PRK14949 182 EIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAF 227 (944)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 98888776 3445566777888889999999999999877643
No 118
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=2.5e-13 Score=152.15 Aligned_cols=175 Identities=16% Similarity=0.214 Sum_probs=122.6
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhcCC------------------------CEEEEcccccccccchhhHhhHHHHHH
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDSDF------------------------PFVKIISAESMIGLHESTKCAQIVKVF 587 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~~~------------------------~~i~v~~~~~~~g~~~~~~~~~i~~if 587 (744)
..+..+||+||+|+|||++|+++|+..++ .++.++.++ ..+...++++.
T Consensus 35 rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs-------~~~VddIReli 107 (702)
T PRK14960 35 RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAAS-------RTKVEDTRELL 107 (702)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccc-------cCCHHHHHHHH
Confidence 33467799999999999999999987654 222222211 12345677777
Q ss_pred HHHh----cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEE
Q 004584 588 EDAY----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTY 663 (744)
Q Consensus 588 ~~a~----~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i 663 (744)
+.+. .++..|+||||+|+|. ....++|+..|+..+. .+.+|.+|+.+..+.. .+++|+ .++
T Consensus 108 ~~~~y~P~~gk~KV~IIDEVh~LS----------~~A~NALLKtLEEPP~---~v~FILaTtd~~kIp~-TIlSRC-q~f 172 (702)
T PRK14960 108 DNVPYAPTQGRFKVYLIDEVHMLS----------THSFNALLKTLEEPPE---HVKFLFATTDPQKLPI-TVISRC-LQF 172 (702)
T ss_pred HHHhhhhhcCCcEEEEEechHhcC----------HHHHHHHHHHHhcCCC---CcEEEEEECChHhhhH-HHHHhh-hee
Confidence 7653 2456899999999984 4567788888887542 4455556666665544 344555 699
Q ss_pred EcCCCCHHHHHHHHHH----ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHH
Q 004584 664 HVPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 739 (744)
Q Consensus 664 ~~p~~~~~~~~~Il~~----~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~ 739 (744)
+|.+++.+++.+.+++ .+...+++....+...++|++|.++++++.+... |...||.+++.+.+.
T Consensus 173 eFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIay-----------g~g~IT~edV~~lLG 241 (702)
T PRK14960 173 TLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAY-----------GQGAVHHQDVKEMLG 241 (702)
T ss_pred eccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-----------cCCCcCHHHHHHHhc
Confidence 9999998888777764 3555667777778888999999999999876654 234577777766543
No 119
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=7.6e-14 Score=140.29 Aligned_cols=142 Identities=21% Similarity=0.325 Sum_probs=111.3
Q ss_pred eeeeeecCCCCChhHHHHHHHhhc---------CCCEEEEcccccccccchhhHhhHHHHHHHHHh-----cCCCeEEEE
Q 004584 535 VTCLLEGPSGSGKTALAATAGIDS---------DFPFVKIISAESMIGLHESTKCAQIVKVFEDAY-----KSPLSIIIL 600 (744)
Q Consensus 535 ~~~Ll~GppG~GKT~la~~~a~~~---------~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~-----~~~~~il~i 600 (744)
+-+||+||||||||+++|++|..+ ...++.+++.. ++.++-+++.+.+.++|++.. +...-.++|
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshs-LFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLI 256 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHS-LFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLI 256 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhH-HHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 457999999999999999999764 34568887777 455666666667888888753 223345678
Q ss_pred eccchhhccCC-----CCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCCCCHHHHHH
Q 004584 601 DDIERLLEYVP-----IGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKK 675 (744)
Q Consensus 601 DEid~l~~~~~-----~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~ 675 (744)
||+++|...|. .-|+..-++.+++++.|+++. ...+|++++|+|-.+.+|. .+.+|-|-+.++.+|+.+.+..
T Consensus 257 DEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK-~~~NvliL~TSNl~~siD~-AfVDRADi~~yVG~Pt~~ai~~ 334 (423)
T KOG0744|consen 257 DEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK-RYPNVLILATSNLTDSIDV-AFVDRADIVFYVGPPTAEAIYE 334 (423)
T ss_pred HHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc-cCCCEEEEeccchHHHHHH-HhhhHhhheeecCCccHHHHHH
Confidence 99999987662 223445578899999999884 3458999999999999987 6678999999999999999999
Q ss_pred HHHH
Q 004584 676 VLKQ 679 (744)
Q Consensus 676 Il~~ 679 (744)
|++.
T Consensus 335 Ilks 338 (423)
T KOG0744|consen 335 ILKS 338 (423)
T ss_pred HHHH
Confidence 9986
No 120
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=2.7e-13 Score=153.19 Aligned_cols=199 Identities=17% Similarity=0.189 Sum_probs=137.9
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE-Eec----
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK-IVN---- 287 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~-~v~---- 287 (744)
.-+|++ |.|.++.++.| +.++... +.++.+||+||+|||||++++.+++.+++.... ...
T Consensus 12 PqtFdE--VIGQe~Vv~~L-~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 12 PKDFAS--LVGQEHVVRAL-THALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred CCcHHH--HcCcHHHHHHH-HHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 457888 99999998888 6665422 223468999999999999999999999753210 000
Q ss_pred --ccc--------hhc--ccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHH
Q 004584 288 --GPE--------VLS--KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (744)
Q Consensus 288 --~~~--------l~~--~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~L 355 (744)
|.. ++. .........++++++.+... +..+ ...|+||||+|.|. ....+.|
T Consensus 77 ~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~-P~~g---r~KVIIIDEah~LT-------------~~A~NAL 139 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYA-PVDA---RFKVYMIDEVHMLT-------------NHAFNAM 139 (830)
T ss_pred HHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhc-cccC---CceEEEEeChhhCC-------------HHHHHHH
Confidence 111 110 00112234567777665432 2222 24599999999884 2356778
Q ss_pred HHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcC
Q 004584 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (744)
Q Consensus 356 L~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~ 435 (744)
|+.|+. ...++.+|.+||.++.|.+.+++ |+. .+.|..++.++..+.|+..+++.. ...++..+..|++.+.
T Consensus 140 LKtLEE--PP~~v~FILaTtd~~KIp~TIrS--RCq-~f~Fk~Ls~eeIv~~L~~Il~~Eg---I~id~eAL~lIA~~A~ 211 (830)
T PRK07003 140 LKTLEE--PPPHVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPAGHIVSHLERILGEER---IAFEPQALRLLARAAQ 211 (830)
T ss_pred HHHHHh--cCCCeEEEEEECChhhccchhhh--heE-EEecCCcCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcC
Confidence 888873 44588999999999999999999 874 789999999999998888776432 1234556888889988
Q ss_pred CCChHHHHHHHHHHHHH
Q 004584 436 NYSGAELEGVAKSAVSF 452 (744)
Q Consensus 436 g~sg~dl~~l~~~A~~~ 452 (744)
| +.++..+++..+..+
T Consensus 212 G-smRdALsLLdQAia~ 227 (830)
T PRK07003 212 G-SMRDALSLTDQAIAY 227 (830)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 7 677877777776644
No 121
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=4.9e-13 Score=145.40 Aligned_cols=181 Identities=18% Similarity=0.230 Sum_probs=122.2
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhcCCCEEEEc----------------ccccc-cccchhhHhhHHHHHHHHHhc---
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVKII----------------SAESM-IGLHESTKCAQIVKVFEDAYK--- 592 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~----------------~~~~~-~g~~~~~~~~~i~~if~~a~~--- 592 (744)
.+..+||+||||+|||++|+++|+...+...... .++.+ +......+...++++.+.+..
T Consensus 37 ~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~ 116 (363)
T PRK14961 37 IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPS 116 (363)
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcc
Confidence 3455799999999999999999987653210000 00111 001111234567777776543
Q ss_pred -CCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCCCCHH
Q 004584 593 -SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTD 671 (744)
Q Consensus 593 -~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~~~~ 671 (744)
+...|+||||+|.+. ...+++|+..++..+. .+.+|.+|+.++.+.+ .+++|+ ..++|++++.+
T Consensus 117 ~~~~kviIIDEa~~l~----------~~a~naLLk~lEe~~~---~~~fIl~t~~~~~l~~-tI~SRc-~~~~~~~l~~~ 181 (363)
T PRK14961 117 KSRFKVYLIDEVHMLS----------RHSFNALLKTLEEPPQ---HIKFILATTDVEKIPK-TILSRC-LQFKLKIISEE 181 (363)
T ss_pred cCCceEEEEEChhhcC----------HHHHHHHHHHHhcCCC---CeEEEEEcCChHhhhH-HHHhhc-eEEeCCCCCHH
Confidence 235799999999974 4556778887776532 4555556666665554 456676 58999999999
Q ss_pred HHHHHHHH----ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHH
Q 004584 672 DAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 739 (744)
Q Consensus 672 ~~~~Il~~----~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~ 739 (744)
++.+++++ .+...+++....+...++|++|.+++.++.+... +...||.+++.+++.
T Consensus 182 el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~~-----------~~~~It~~~v~~~l~ 242 (363)
T PRK14961 182 KIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINL-----------GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-----------cCCCCCHHHHHHHHC
Confidence 98888775 3444566667777888899999999999988654 234588888877654
No 122
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.52 E-value=4.2e-13 Score=145.81 Aligned_cols=195 Identities=16% Similarity=0.234 Sum_probs=130.9
Q ss_pred ccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE----------
Q 004584 216 LQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI---------- 285 (744)
Q Consensus 216 ~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~---------- 285 (744)
|++ |.|+++.++.+ ++++.....++ ..++.+.++.+||+||||+|||++|+++|+.+.+.....
T Consensus 4 f~~--IiGq~~~~~~L-~~~i~~~~~~~---~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~ 77 (394)
T PRK07940 4 WDD--LVGQEAVVAEL-RAAARAARADV---AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACR 77 (394)
T ss_pred hhh--ccChHHHHHHH-HHHHHhccccc---cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHH
Confidence 666 99999999988 88887664322 234445677899999999999999999999886532100
Q ss_pred ----ecccchhc--c-cccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHh
Q 004584 286 ----VNGPEVLS--K-FVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTK 358 (744)
Q Consensus 286 ----v~~~~l~~--~-~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~ 358 (744)
-+.+++.- . -..-....+|++++.+... |.. +...|+||||+|.+.+ ...+.||+.
T Consensus 78 ~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~-p~~---~~~kViiIDead~m~~-------------~aanaLLk~ 140 (394)
T PRK07940 78 TVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARR-PST---GRWRIVVIEDADRLTE-------------RAANALLKA 140 (394)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhC-ccc---CCcEEEEEechhhcCH-------------HHHHHHHHH
Confidence 00111100 0 0112234578888877643 222 2356999999999842 234678888
Q ss_pred ccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCC
Q 004584 359 IDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYS 438 (744)
Q Consensus 359 ~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~s 438 (744)
|+. +..++++|.+|+.++.+.|.+++ |+ ..+.|++|+.++..++|.... . + ++.....++..++|..
T Consensus 141 LEe--p~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~----~-~~~~a~~la~~s~G~~ 207 (394)
T PRK07940 141 VEE--PPPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---G----V-DPETARRAARASQGHI 207 (394)
T ss_pred hhc--CCCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---C----C-CHHHHHHHHHHcCCCH
Confidence 874 33455555566668999999999 76 489999999998887776321 1 2 2345678889999987
Q ss_pred hHHHHHHH
Q 004584 439 GAELEGVA 446 (744)
Q Consensus 439 g~dl~~l~ 446 (744)
++.+.-+.
T Consensus 208 ~~A~~l~~ 215 (394)
T PRK07940 208 GRARRLAT 215 (394)
T ss_pred HHHHHHhc
Confidence 76655443
No 123
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=5.5e-13 Score=151.67 Aligned_cols=157 Identities=17% Similarity=0.267 Sum_probs=114.7
Q ss_pred eeeeeecCCCCChhHHHHHHHhhcCCC------------------------EEEEcccccccccchhhHhhHHHHHHHHH
Q 004584 535 VTCLLEGPSGSGKTALAATAGIDSDFP------------------------FVKIISAESMIGLHESTKCAQIVKVFEDA 590 (744)
Q Consensus 535 ~~~Ll~GppG~GKT~la~~~a~~~~~~------------------------~i~v~~~~~~~g~~~~~~~~~i~~if~~a 590 (744)
..+||+||+|+|||++|+++|+..++. ++.++..+ ..+.+.++++.+.+
T Consensus 39 hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas-------~~~VddiR~li~~~ 111 (647)
T PRK07994 39 HAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAAS-------RTKVEDTRELLDNV 111 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccc-------cCCHHHHHHHHHHH
Confidence 446899999999999999999876552 22222111 12345677766654
Q ss_pred h----cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcC
Q 004584 591 Y----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVP 666 (744)
Q Consensus 591 ~----~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p 666 (744)
. .+...|+||||+|+|. ...+++||..|+..+. .+.+|.+|+.+..+-+ .+++| +..++|.
T Consensus 112 ~~~p~~g~~KV~IIDEah~Ls----------~~a~NALLKtLEEPp~---~v~FIL~Tt~~~kLl~-TI~SR-C~~~~f~ 176 (647)
T PRK07994 112 QYAPARGRFKVYLIDEVHMLS----------RHSFNALLKTLEEPPE---HVKFLLATTDPQKLPV-TILSR-CLQFHLK 176 (647)
T ss_pred HhhhhcCCCEEEEEechHhCC----------HHHHHHHHHHHHcCCC---CeEEEEecCCccccch-HHHhh-heEeeCC
Confidence 3 3466899999999984 6678889988887543 5566666777766654 45667 6899999
Q ss_pred CCCHHHHHHHHHHc----cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhc
Q 004584 667 TLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQG 713 (744)
Q Consensus 667 ~~~~~~~~~Il~~~----~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~ 713 (744)
+++.+++...|++. +...+++....+...++|++|.++++++.+...
T Consensus 177 ~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqaia~ 227 (647)
T PRK07994 177 ALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIAS 227 (647)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999988887753 444566667778888999999999999887654
No 124
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=5.5e-13 Score=147.63 Aligned_cols=162 Identities=26% Similarity=0.344 Sum_probs=120.2
Q ss_pred cCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEeccc------chhc-
Q 004584 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGP------EVLS- 293 (744)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~------~l~~- 293 (744)
=-||++.+++|+ +.++-....+. ....-++|+||||+|||+|++.||+.++ +.|+.++.. ++-+
T Consensus 325 HYGLekVKeRIl-EyLAV~~l~~~-------~kGpILcLVGPPGVGKTSLgkSIA~al~-RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 325 HYGLEKVKERIL-EYLAVQKLTKK-------LKGPILCLVGPPGVGKTSLGKSIAKALG-RKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccCchhHHHHHH-HHHHHHHHhcc-------CCCcEEEEECCCCCCchhHHHHHHHHhC-CCEEEEecCccccHHHhccc
Confidence 568888888883 44433322211 1112477999999999999999999995 555554433 2222
Q ss_pred --ccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCcc--------
Q 004584 294 --KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE-------- 363 (744)
Q Consensus 294 --~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~-------- 363 (744)
.|+|..+.++-+-+..|....| ++++||||.+..+-... =-..||+.+|.-.
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP---------v~LLDEIDKm~ss~rGD---------PaSALLEVLDPEQN~~F~DhY 457 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP---------VFLLDEIDKMGSSFRGD---------PASALLEVLDPEQNNTFSDHY 457 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC---------eEEeechhhccCCCCCC---------hHHHHHhhcCHhhcCchhhcc
Confidence 6899999999999999888765 99999999997542211 1234666666321
Q ss_pred -----CCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHH
Q 004584 364 -----SLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHT 412 (744)
Q Consensus 364 -----~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~ 412 (744)
..++|++|+|+|..+.|+..|+. |++ .|+++-+++++..+|.+.|+
T Consensus 458 Lev~yDLS~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 458 LEVPYDLSKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred ccCccchhheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhc
Confidence 23579999999999999999998 988 79999999999999999885
No 125
>PLN03025 replication factor C subunit; Provisional
Probab=99.51 E-value=3.1e-13 Score=144.70 Aligned_cols=157 Identities=13% Similarity=0.074 Sum_probs=106.6
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhcC-----CCEEEEcccccccccchhhHhhHHHHHHHHHh-------cCCCeEEEE
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDSD-----FPFVKIISAESMIGLHESTKCAQIVKVFEDAY-------KSPLSIIIL 600 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~~-----~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~-------~~~~~il~i 600 (744)
...++||+||||||||++|+++|++.. ..++.++.++. .| ...+++..+... ...+.|++|
T Consensus 33 ~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~-~~------~~~vr~~i~~~~~~~~~~~~~~~kviii 105 (319)
T PLN03025 33 NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD-RG------IDVVRNKIKMFAQKKVTLPPGRHKIVIL 105 (319)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc-cc------HHHHHHHHHHHHhccccCCCCCeEEEEE
Confidence 345799999999999999999998752 23455544332 11 112333332211 134689999
Q ss_pred eccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCCCCHHHHHHHHHH-
Q 004584 601 DDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQ- 679 (744)
Q Consensus 601 DEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~- 679 (744)
||+|.+. ...+++|+..++..+. ...+|.++|....+.+ .+++|. ..++|++++.+++...++.
T Consensus 106 DE~d~lt----------~~aq~aL~~~lE~~~~---~t~~il~~n~~~~i~~-~L~SRc-~~i~f~~l~~~~l~~~L~~i 170 (319)
T PLN03025 106 DEADSMT----------SGAQQALRRTMEIYSN---TTRFALACNTSSKIIE-PIQSRC-AIVRFSRLSDQEILGRLMKV 170 (319)
T ss_pred echhhcC----------HHHHHHHHHHHhcccC---CceEEEEeCCccccch-hHHHhh-hcccCCCCCHHHHHHHHHHH
Confidence 9999984 4567888888876432 2234445666555544 456665 5899999999988877775
Q ss_pred ---ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 004584 680 ---LNVFAEEDVDSASEALNDMPIKKLYMLIEMAA 711 (744)
Q Consensus 680 ---~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~ 711 (744)
.+...+++....+...++||+|.+++.++.+.
T Consensus 171 ~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~ 205 (319)
T PLN03025 171 VEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATH 205 (319)
T ss_pred HHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34455566677777788999999999999655
No 126
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.51 E-value=8e-14 Score=150.62 Aligned_cols=168 Identities=20% Similarity=0.240 Sum_probs=122.9
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEccccc--------ccccchhhHhhHHH----HHHHHHhcCCCe
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES--------MIGLHESTKCAQIV----KVFEDAYKSPLS 596 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~--------~~g~~~~~~~~~i~----~if~~a~~~~~~ 596 (744)
....+||+.|++||||..+|+++++.+ +.|||+++|+.. ++|+-.++...+.+ .+|+.|.. +
T Consensus 266 ~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---G 342 (560)
T COG3829 266 KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYEKGAFTGASKGGKPGLFELANG---G 342 (560)
T ss_pred CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcCCccccccccCCCCcceeeccC---C
Confidence 345789999999999999999999887 689999999864 46665544333333 36666654 5
Q ss_pred EEEEeccchhhccCCCCcchhHHHHHHHHHHhccCC--------CCCCcEEEEEeCCCCCCCCccccccccc--------
Q 004584 597 IIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP--------PKGKKLLVIGTTSEVSFLDSVGICDAFS-------- 660 (744)
Q Consensus 597 il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--------~~~~~v~vi~~tn~~~~l~~~~l~~rf~-------- 660 (744)
-||||||..|. -.+|..||..|..-. +...+|.||+|||+. +..+.-.++|.
T Consensus 343 TLFLDEIgemp----------l~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~n--L~~~i~~G~FReDLYYRLN 410 (560)
T COG3829 343 TLFLDEIGEMP----------LPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRN--LEKMIAEGTFREDLYYRLN 410 (560)
T ss_pred eEEehhhccCC----------HHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcC--HHHHHhcCcchhhheeeec
Confidence 69999999874 567777777765522 233479999999986 22222223332
Q ss_pred -eEEEcCCCC--HHHHHHHHHHc------------cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcc
Q 004584 661 -VTYHVPTLK--TDDAKKVLKQL------------NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGE 714 (744)
Q Consensus 661 -~~i~~p~~~--~~~~~~Il~~~------------~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a 714 (744)
..|.+||+. .+|+..+..++ ...+++.+..+.++.|+||+|+|-++++++....
T Consensus 411 V~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v~~~ 479 (560)
T COG3829 411 VIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELENVIERAVNLV 479 (560)
T ss_pred eeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCchHHHHHHHHHHHHhcc
Confidence 347889988 78888777752 2567777788888889999999999999998743
No 127
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=2.2e-13 Score=152.09 Aligned_cols=198 Identities=17% Similarity=0.200 Sum_probs=137.1
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE--------
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK-------- 284 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~-------- 284 (744)
.-+|++ |.|.++.++.| ++++... +.++.+||+||+|||||++|+.+++.+++...-
T Consensus 12 PqtFdd--VIGQe~vv~~L-~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 12 PRDFTT--LVGQEHVVRAL-THALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred CCcHHH--HcCcHHHHHHH-HHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 457888 99999998887 6666533 223468999999999999999999999762110
Q ss_pred -Eeccc-----------chhcc--cccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHH
Q 004584 285 -IVNGP-----------EVLSK--FVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDS 350 (744)
Q Consensus 285 -~v~~~-----------~l~~~--~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~ 350 (744)
.-.|. +++.- ........+|++.+.+... +..+ ...|+||||+|.|. ..
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~-P~~g---r~KViIIDEah~Ls-------------~~ 139 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYA-PTAG---RFKVYMIDEVHMLT-------------NH 139 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhc-hhcC---CceEEEEEChHhcC-------------HH
Confidence 00011 11110 0012245577777665432 2222 24599999999984 34
Q ss_pred HHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHH
Q 004584 351 IVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQEL 430 (744)
Q Consensus 351 ~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~l 430 (744)
..|.||+.|+. ...++++|.+||.++.|.+.+++ |+. .+.|..++.++..+.|+..+..... ..++..+..+
T Consensus 140 AaNALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RCq-~f~f~~ls~eei~~~L~~Il~~Egi---~~d~eAL~~I 211 (700)
T PRK12323 140 AFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPPGHIVSHLDAILGEEGI---AHEVNALRLL 211 (700)
T ss_pred HHHHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HHH-hcccCCCChHHHHHHHHHHHHHcCC---CCCHHHHHHH
Confidence 56789988884 45688999999999999999999 764 7899999999988888877654321 1233446778
Q ss_pred HHhcCCCChHHHHHHHHHHHH
Q 004584 431 AARTKNYSGAELEGVAKSAVS 451 (744)
Q Consensus 431 a~~t~g~sg~dl~~l~~~A~~ 451 (744)
++.++| +.++..+++..+..
T Consensus 212 A~~A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 212 AQAAQG-SMRDALSLTDQAIA 231 (700)
T ss_pred HHHcCC-CHHHHHHHHHHHHH
Confidence 888877 77787777776554
No 128
>PRK04195 replication factor C large subunit; Provisional
Probab=99.51 E-value=6.6e-13 Score=149.95 Aligned_cols=176 Identities=19% Similarity=0.217 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHhhHHHHHHHHHhc--
Q 004584 515 IYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYK-- 592 (744)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~-- 592 (744)
..+.+..+++.+. ...++.++||+||||||||++|+++|++.+++++.++..+.. ....+.++...+..
T Consensus 22 ~~~~l~~~l~~~~--~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r-------~~~~i~~~i~~~~~~~ 92 (482)
T PRK04195 22 AKEQLREWIESWL--KGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR-------TADVIERVAGEAATSG 92 (482)
T ss_pred HHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccc-------cHHHHHHHHHHhhccC
Confidence 3344444444333 234578999999999999999999999999999998765431 11134444433321
Q ss_pred ----CCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCCC
Q 004584 593 ----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTL 668 (744)
Q Consensus 593 ----~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~ 668 (744)
..+.+|+|||+|.|.... ....+++|+..++.. +..+|.++|.+..+....++ +++..++|++|
T Consensus 93 sl~~~~~kvIiIDEaD~L~~~~------d~~~~~aL~~~l~~~-----~~~iIli~n~~~~~~~k~Lr-sr~~~I~f~~~ 160 (482)
T PRK04195 93 SLFGARRKLILLDEVDGIHGNE------DRGGARAILELIKKA-----KQPIILTANDPYDPSLRELR-NACLMIEFKRL 160 (482)
T ss_pred cccCCCCeEEEEecCccccccc------chhHHHHHHHHHHcC-----CCCEEEeccCccccchhhHh-ccceEEEecCC
Confidence 256899999999986321 123456666666632 22345567777655543444 44568999999
Q ss_pred CHHHHHHHHHHc----cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 004584 669 KTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAA 711 (744)
Q Consensus 669 ~~~~~~~Il~~~----~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~ 711 (744)
+.+++..++++. +...+++....+...++|++|.+++.++..+
T Consensus 161 ~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 161 STRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 999888888763 4445667777777888999999999998844
No 129
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.51 E-value=2.8e-13 Score=157.19 Aligned_cols=179 Identities=18% Similarity=0.302 Sum_probs=125.4
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHhhHHHHHHHHHh-----cCCCeEEEEeccchh
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAY-----KSPLSIIILDDIERL 606 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~-----~~~~~il~iDEid~l 606 (744)
....+++|+||||||||++|+++|+..+.+|+.+++... +. +.++++++.+. .....+|||||||.+
T Consensus 50 ~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~--~i------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~L 121 (725)
T PRK13341 50 DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA--GV------KDLRAEVDRAKERLERHGKRTILFIDEVHRF 121 (725)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh--hh------HHHHHHHHHHHHHhhhcCCceEEEEeChhhC
Confidence 345689999999999999999999999988888765421 11 12333333331 134579999999997
Q ss_pred hccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCC--CCCccccccccceEEEcCCCCHHHHHHHHHHc----
Q 004584 607 LEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVS--FLDSVGICDAFSVTYHVPTLKTDDAKKVLKQL---- 680 (744)
Q Consensus 607 ~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~--~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~---- 680 (744)
. ...++.|+..++. ..+++|++|+... .+++ .+.+| +..+.|++++.+++..++++.
T Consensus 122 n----------~~qQdaLL~~lE~-----g~IiLI~aTTenp~~~l~~-aL~SR-~~v~~l~pLs~edi~~IL~~~l~~~ 184 (725)
T PRK13341 122 N----------KAQQDALLPWVEN-----GTITLIGATTENPYFEVNK-ALVSR-SRLFRLKSLSDEDLHQLLKRALQDK 184 (725)
T ss_pred C----------HHHHHHHHHHhcC-----ceEEEEEecCCChHhhhhh-Hhhcc-ccceecCCCCHHHHHHHHHHHHHHH
Confidence 4 4556677776653 3677887776533 3444 45566 457999999999999999863
Q ss_pred -------cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHHH
Q 004584 681 -------NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQD 740 (744)
Q Consensus 681 -------~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~~ 740 (744)
+...+++....+...++||+|+++++++.+...+... ..+...||.+++.+++.+
T Consensus 185 ~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a~~~~~~~-----~~~~i~It~~~~~e~l~~ 246 (725)
T PRK13341 185 ERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAVESTPPD-----EDGLIDITLAIAEESIQQ 246 (725)
T ss_pred HhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccC-----CCCceeccHHHHHHHHHH
Confidence 1234567777777888999999999999987543211 112234888888887765
No 130
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=4.2e-13 Score=149.96 Aligned_cols=158 Identities=14% Similarity=0.215 Sum_probs=113.0
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhcCC-----------------------------CEEEEcccccccccchhhHhhHHH
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDSDF-----------------------------PFVKIISAESMIGLHESTKCAQIV 584 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~~~-----------------------------~~i~v~~~~~~~g~~~~~~~~~i~ 584 (744)
+..+||+||+|+|||++|+.+|+..++ .++.++.. ...+.+.++
T Consensus 38 pHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAa-------s~~gVDdIR 110 (700)
T PRK12323 38 HHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAA-------SNRGVDEMA 110 (700)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEeccc-------ccCCHHHHH
Confidence 345699999999999999999987654 12222111 112345677
Q ss_pred HHHHHHh----cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccc
Q 004584 585 KVFEDAY----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFS 660 (744)
Q Consensus 585 ~if~~a~----~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~ 660 (744)
++.+.+. .+...|+||||+|+|. ....+.||..|+..+ .+++||.+||.++.+.+ .+++|+
T Consensus 111 eLie~~~~~P~~gr~KViIIDEah~Ls----------~~AaNALLKTLEEPP---~~v~FILaTtep~kLlp-TIrSRC- 175 (700)
T PRK12323 111 QLLDKAVYAPTAGRFKVYMIDEVHMLT----------NHAFNAMLKTLEEPP---EHVKFILATTDPQKIPV-TVLSRC- 175 (700)
T ss_pred HHHHHHHhchhcCCceEEEEEChHhcC----------HHHHHHHHHhhccCC---CCceEEEEeCChHhhhh-HHHHHH-
Confidence 7777653 3456899999999984 456777888777643 35667777777776665 455664
Q ss_pred eEEEcCCCCHHHHHHHHHH----ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhc
Q 004584 661 VTYHVPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQG 713 (744)
Q Consensus 661 ~~i~~p~~~~~~~~~Il~~----~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~ 713 (744)
..++|++++.+++.+.|++ .+...+++....+.+.++|++|.++++++.+...
T Consensus 176 q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia~ 232 (700)
T PRK12323 176 LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAY 232 (700)
T ss_pred HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 6899999998888877764 3444556667788888999999999999876654
No 131
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.51 E-value=1.1e-12 Score=145.36 Aligned_cols=231 Identities=16% Similarity=0.205 Sum_probs=146.9
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcC----CCcEEec
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG----MEPKIVN 287 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~----~~~~~v~ 287 (744)
+++..+. +.|-+++++++ ...+...+. | ..+.+++++||||||||++++.+++.+.. ..+..++
T Consensus 25 ~~~~P~~--l~~Re~e~~~l-~~~l~~~~~--------~-~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in 92 (394)
T PRK00411 25 PDYVPEN--LPHREEQIEEL-AFALRPALR--------G-SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN 92 (394)
T ss_pred CCCcCCC--CCCHHHHHHHH-HHHHHHHhC--------C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 3344444 89999999998 444432211 1 23457999999999999999999988732 3355677
Q ss_pred ccchhc----------cccc-------c-hHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHH
Q 004584 288 GPEVLS----------KFVG-------E-TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHD 349 (744)
Q Consensus 288 ~~~l~~----------~~~g-------~-~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~ 349 (744)
+....+ ...+ . ....+..+++..... ..+.||+|||+|.+.... ..
T Consensus 93 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~viviDE~d~l~~~~---------~~ 156 (394)
T PRK00411 93 CQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDER-------DRVLIVALDDINYLFEKE---------GN 156 (394)
T ss_pred CCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhc-------CCEEEEEECCHhHhhccC---------Cc
Confidence 654322 1111 0 112222222222211 236799999999997211 12
Q ss_pred HHHHHHHHhccCccCCCcEEEEEEeCCCC---ccchhhcCCCccc-eEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcc
Q 004584 350 SIVNQLLTKIDGVESLNNVLLIGMTNRKD---MLDEALLRPGRLE-VQVEISLPDENGRLQILQIHTNKMKENSFLAPDV 425 (744)
Q Consensus 350 ~~~~~LL~~~d~~~~~~~v~vI~~tn~~~---~id~al~r~gRf~-~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~ 425 (744)
..+..|+..++.... .++.+|+++|..+ .+++.+.+ ||. ..|.|++++.++..+|++.+++.-.... ..++.
T Consensus 157 ~~l~~l~~~~~~~~~-~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~-~~~~~ 232 (394)
T PRK00411 157 DVLYSLLRAHEEYPG-ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPG-VVDDE 232 (394)
T ss_pred hHHHHHHHhhhccCC-CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccC-CCCHh
Confidence 356666666554332 3788999988764 46777776 553 5789999999999999998875421111 23445
Q ss_pred cHHHHHHhcCCCC--hHHHHHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHHhhhc
Q 004584 426 NLQELAARTKNYS--GAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIV 487 (744)
Q Consensus 426 ~l~~la~~t~g~s--g~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ 487 (744)
.++.+++.+.+.+ .+.+..+|+.|...|..+. ...|+.+|+..|+..+.
T Consensus 233 ~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~-------------~~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 233 VLDLIADLTAREHGDARVAIDLLRRAGLIAEREG-------------SRKVTEEDVRKAYEKSE 283 (394)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC-------------CCCcCHHHHHHHHHHHH
Confidence 5777888775433 3455678888887776542 23689999999988763
No 132
>PRK06893 DNA replication initiation factor; Validated
Probab=99.50 E-value=1.4e-13 Score=139.86 Aligned_cols=178 Identities=17% Similarity=0.223 Sum_probs=119.9
Q ss_pred eeeeeecCCCCChhHHHHHHHhhc---CCCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhhccCC
Q 004584 535 VTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVP 611 (744)
Q Consensus 535 ~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~~ 611 (744)
..++||||||||||++++++|++. +.....+..... . ....++++... ...+|+|||++.+.+.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~-----~----~~~~~~~~~~~--~~dlLilDDi~~~~~~-- 106 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS-----Q----YFSPAVLENLE--QQDLVCLDDLQAVIGN-- 106 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh-----h----hhhHHHHhhcc--cCCEEEEeChhhhcCC--
Confidence 468999999999999999999764 223222221110 0 01123333332 3579999999998521
Q ss_pred CCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCc--ccccccc--ceEEEcCCCCHHHHHHHHHH----ccCC
Q 004584 612 IGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDS--VGICDAF--SVTYHVPTLKTDDAKKVLKQ----LNVF 683 (744)
Q Consensus 612 ~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~--~~l~~rf--~~~i~~p~~~~~~~~~Il~~----~~~~ 683 (744)
......|+.+++.....+..++|++++..|..++. ..+++|+ ...+.+++|+.+++.+|+++ .+..
T Consensus 107 ------~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~ 180 (229)
T PRK06893 107 ------EEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIE 180 (229)
T ss_pred ------hHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 22334566666655444445666766666766542 2566654 57889999999999999995 3456
Q ss_pred CHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHH
Q 004584 684 AEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 739 (744)
Q Consensus 684 ~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~ 739 (744)
.++++...+....++++|.++.+++.....+-. .+ ..||...+++++.
T Consensus 181 l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~~~-------~~-~~it~~~v~~~L~ 228 (229)
T PRK06893 181 LSDEVANFLLKRLDRDMHTLFDALDLLDKASLQ-------AQ-RKLTIPFVKEILG 228 (229)
T ss_pred CCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh-------cC-CCCCHHHHHHHhc
Confidence 788889999999999999999999876432211 13 3599999988874
No 133
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.50 E-value=3.9e-13 Score=148.88 Aligned_cols=223 Identities=20% Similarity=0.300 Sum_probs=138.9
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhc----CCCcEEec
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN----GMEPKIVN 287 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~----~~~~~~v~ 287 (744)
+..+|++.-+|.-.........++...+ + ....+++||||||+|||+|++++++++. +..+.+++
T Consensus 105 ~~~tfd~fi~g~~n~~a~~~~~~~~~~~----------~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 105 PKYTFDNFVVGKSNRLAHAAALAVAENP----------G-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCCcccccccCCcHHHHHHHHHHHHhCc----------C-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 6788998645544443333323333221 1 2235699999999999999999999883 34566788
Q ss_pred ccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCc
Q 004584 288 GPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNN 367 (744)
Q Consensus 288 ~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~ 367 (744)
+.++...+.........+-|...... +.+|+|||+|.+..+.. ... .|+..++.....+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~dlLiiDDi~~l~~~~~--------~~~---~l~~~~n~~~~~~~ 233 (405)
T TIGR00362 174 SEKFTNDFVNALRNNKMEEFKEKYRS---------VDLLLIDDIQFLAGKER--------TQE---EFFHTFNALHENGK 233 (405)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHh---------CCEEEEehhhhhcCCHH--------HHH---HHHHHHHHHHHCCC
Confidence 87776654432211111122221111 34999999999863321 112 22232322222334
Q ss_pred EEEEEEeCCCCc---cchhhcCCCccc--eEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHH
Q 004584 368 VLLIGMTNRKDM---LDEALLRPGRLE--VQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAEL 442 (744)
Q Consensus 368 v~vI~~tn~~~~---id~al~r~gRf~--~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl 442 (744)
.+||+++..|+. +++.+++ ||. ..++|++||.++|.+|++..++.... ..++..++.+|+...+ +.++|
T Consensus 234 ~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~---~l~~e~l~~ia~~~~~-~~r~l 307 (405)
T TIGR00362 234 QIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGL---ELPDEVLEFIAKNIRS-NVREL 307 (405)
T ss_pred CEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhcCC-CHHHH
Confidence 456655555554 5688888 875 47999999999999999998876432 2345568889988875 88999
Q ss_pred HHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHHhh
Q 004584 443 EGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYE 485 (744)
Q Consensus 443 ~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~ 485 (744)
+.++.....++.... ..+|.+....++..
T Consensus 308 ~~~l~~l~~~a~~~~--------------~~it~~~~~~~L~~ 336 (405)
T TIGR00362 308 EGALNRLLAYASLTG--------------KPITLELAKEALKD 336 (405)
T ss_pred HHHHHHHHHHHHHhC--------------CCCCHHHHHHHHHH
Confidence 998888776664321 23566666666654
No 134
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.50 E-value=3.2e-13 Score=151.43 Aligned_cols=224 Identities=19% Similarity=0.305 Sum_probs=142.6
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcC----CCcEEec
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG----MEPKIVN 287 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~----~~~~~v~ 287 (744)
+..+|++.-+|.-.+......+++...+ | ....+++||||||||||+|++++++++.. ..+.+++
T Consensus 117 ~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 117 PKYTFDNFVVGKSNRLAHAAALAVAENP----------G-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCcccccccCCCcHHHHHHHHHHHhCc----------C-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 6788998645544442222223332221 1 22356999999999999999999999842 3466778
Q ss_pred ccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCc
Q 004584 288 GPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNN 367 (744)
Q Consensus 288 ~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~ 367 (744)
+.++.+.+..........-|...... +.+|+|||+|.+..+.. ....|+..++.+...+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~dlLiiDDi~~l~~~~~-----------~~~~l~~~~n~l~~~~~ 245 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKYRS---------VDVLLIDDIQFLAGKER-----------TQEEFFHTFNALHEAGK 245 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHhc---------CCEEEEehhhhhcCCHH-----------HHHHHHHHHHHHHHCCC
Confidence 88877665443322212223222221 45999999999863321 11223333332222344
Q ss_pred EEEEEEeCCCCc---cchhhcCCCccc--eEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHH
Q 004584 368 VLLIGMTNRKDM---LDEALLRPGRLE--VQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAEL 442 (744)
Q Consensus 368 v~vI~~tn~~~~---id~al~r~gRf~--~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl 442 (744)
.++|++...|.. +++++++ ||. ..++|..||.++|.+||+..+..... ..++..++.+|+.+.| +.++|
T Consensus 246 ~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~---~l~~e~l~~ia~~~~~-~~R~l 319 (450)
T PRK00149 246 QIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGI---DLPDEVLEFIAKNITS-NVREL 319 (450)
T ss_pred cEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHcCcCC-CHHHH
Confidence 566666666555 6789988 885 57999999999999999998875321 2345568889988876 88999
Q ss_pred HHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHHhhh
Q 004584 443 EGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (744)
Q Consensus 443 ~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~ 486 (744)
+.++.....++... ...+|.+....++..+
T Consensus 320 ~~~l~~l~~~~~~~--------------~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 320 EGALNRLIAYASLT--------------GKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHHHHHHHhh--------------CCCCCHHHHHHHHHHh
Confidence 98888877665432 1246777777777754
No 135
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.49 E-value=2e-13 Score=145.62 Aligned_cols=147 Identities=18% Similarity=0.268 Sum_probs=100.2
Q ss_pred CCeEEEEeccchhhccCC-CCcchh-HHHHHHHHHHhccCC-------CCCCcEEEEEeCC----CCCCCCccccccccc
Q 004584 594 PLSIIILDDIERLLEYVP-IGPRFS-NIISQTMLVLLKRLP-------PKGKKLLVIGTTS----EVSFLDSVGICDAFS 660 (744)
Q Consensus 594 ~~~il~iDEid~l~~~~~-~g~~~~-~~~~~~Ll~~l~~~~-------~~~~~v~vi~~tn----~~~~l~~~~l~~rf~ 660 (744)
..+||||||||+++.... .|...| .-+|+.||.++++-. -...+++|||+.. .|..|-| .+.+||.
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIP-El~GR~P 325 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIP-ELQGRFP 325 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccH-HHhCccc
Confidence 457999999999997652 343444 459999999998732 1234678886653 2333333 5679999
Q ss_pred eEEEcCCCCHHHHHHHHHHc------------------cCCCHHHHHHHHHhC-------CCCcHHHHHHHHHHHHhccc
Q 004584 661 VTYHVPTLKTDDAKKVLKQL------------------NVFAEEDVDSASEAL-------NDMPIKKLYMLIEMAAQGEQ 715 (744)
Q Consensus 661 ~~i~~p~~~~~~~~~Il~~~------------------~~~~~~~~~~~~~~~-------~~g~ir~l~~~l~~a~~~a~ 715 (744)
.++.+.+++.+++..||..- -.|+++.+.+++... .+..+|.|..+++.......
T Consensus 326 i~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~ 405 (441)
T TIGR00390 326 IRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDIS 405 (441)
T ss_pred eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHH
Confidence 99999999999999999641 146666665554433 38899999999998876654
Q ss_pred CCcccccccCCCCcchhhHHHHHHHHh
Q 004584 716 GGAAEAIYSGREKIKISHFYDCLQDMV 742 (744)
Q Consensus 716 ~~~~~a~~~g~~~It~e~~~~al~~~~ 742 (744)
-+... .....-.||.+.+.+.+.+++
T Consensus 406 fe~p~-~~~~~v~I~~~~V~~~l~~~~ 431 (441)
T TIGR00390 406 FEAPD-LSGQNITIDADYVSKKLGALV 431 (441)
T ss_pred hcCCC-CCCCEEEECHHHHHhHHHHHH
Confidence 32111 011234588888888877654
No 136
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=6.5e-13 Score=149.25 Aligned_cols=173 Identities=16% Similarity=0.207 Sum_probs=120.2
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhcCCC------------------------EEEEcccccccccchhhHhhHHHHHHHH
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDSDFP------------------------FVKIISAESMIGLHESTKCAQIVKVFED 589 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~~~~------------------------~i~v~~~~~~~g~~~~~~~~~i~~if~~ 589 (744)
+..+||+||+|+|||++|+++|+..++. ++.++.. ...+.+.++++.+.
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaa-------s~~~v~~iR~l~~~ 110 (509)
T PRK14958 38 HHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAA-------SRTKVEDTRELLDN 110 (509)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEccc-------ccCCHHHHHHHHHH
Confidence 3457999999999999999999876542 2323221 12344567777776
Q ss_pred Hh----cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEc
Q 004584 590 AY----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHV 665 (744)
Q Consensus 590 a~----~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~ 665 (744)
+. .+...|+||||+|.|. ....++|+..|+..++ .+.+|.+|+.+..+-+ .+++|. ..++|
T Consensus 111 ~~~~p~~~~~kV~iIDE~~~ls----------~~a~naLLk~LEepp~---~~~fIlattd~~kl~~-tI~SRc-~~~~f 175 (509)
T PRK14958 111 IPYAPTKGRFKVYLIDEVHMLS----------GHSFNALLKTLEEPPS---HVKFILATTDHHKLPV-TVLSRC-LQFHL 175 (509)
T ss_pred HhhccccCCcEEEEEEChHhcC----------HHHHHHHHHHHhccCC---CeEEEEEECChHhchH-HHHHHh-hhhhc
Confidence 53 2456799999999984 4567788888887643 3455555566655544 355665 58899
Q ss_pred CCCCHHHHHHHHH----HccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHH
Q 004584 666 PTLKTDDAKKVLK----QLNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 739 (744)
Q Consensus 666 p~~~~~~~~~Il~----~~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~ 739 (744)
.+++.+++...++ ..+...+++....+...++|++|.++++++.+... |...||.+++.+.+.
T Consensus 176 ~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~-----------~~~~It~~~V~~~lg 242 (509)
T PRK14958 176 AQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAY-----------GNGKVLIADVKTMLG 242 (509)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhc-----------CCCCcCHHHHHHHHC
Confidence 9999888776544 44554566666777778899999999999887654 234577777776654
No 137
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.49 E-value=6.1e-13 Score=150.57 Aligned_cols=219 Identities=19% Similarity=0.232 Sum_probs=139.1
Q ss_pred CcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhc------C---CCcEEecccc
Q 004584 220 GIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN------G---MEPKIVNGPE 290 (744)
Q Consensus 220 ~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~------~---~~~~~v~~~~ 290 (744)
.+.|-++|+++| ..++...+. |-.+...++++|+||||||++++.+.+++. . ..++.+||..
T Consensus 756 ~LPhREeEIeeL-asfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 756 YLPCREKEIKEV-HGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred cCCChHHHHHHH-HHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 399999999999 555543322 112233356999999999999999998773 1 2345688855
Q ss_pred hhcccc----------------c-chHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHH
Q 004584 291 VLSKFV----------------G-ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVN 353 (744)
Q Consensus 291 l~~~~~----------------g-~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~ 353 (744)
+...+. | .+...+..+|...... .....||+|||||.|..+ .+.++.
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~------~r~v~IIILDEID~L~kK----------~QDVLY 890 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKD------NRNVSILIIDEIDYLITK----------TQKVLF 890 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcc------cccceEEEeehHhhhCcc----------HHHHHH
Confidence 333210 1 1223445555544221 123569999999999743 234555
Q ss_pred HHHHhccCccCCCcEEEEEEeCC---CCccchhhcCCCccce-EEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHH
Q 004584 354 QLLTKIDGVESLNNVLLIGMTNR---KDMLDEALLRPGRLEV-QVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQE 429 (744)
Q Consensus 354 ~LL~~~d~~~~~~~v~vI~~tn~---~~~id~al~r~gRf~~-~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~ 429 (744)
.|+.... .....+.|||++|. ++.++|.+++ ||.. ++.|++++.+++.+||+..+.... . ..++..++.
T Consensus 891 nLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~--g-VLdDdAIEL 963 (1164)
T PTZ00112 891 TLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCK--E-IIDHTAIQL 963 (1164)
T ss_pred HHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCC--C-CCCHHHHHH
Confidence 5555433 23457999999987 4567888887 6553 488999999999999998887542 1 334555777
Q ss_pred HHHhcCCCCh--HHHHHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHHhhh
Q 004584 430 LAARTKNYSG--AELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (744)
Q Consensus 430 la~~t~g~sg--~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~ 486 (744)
+|+.....+| +..-.+|+.|+..+ ....|+.+|+..|+.++
T Consensus 964 IArkVAq~SGDARKALDILRrAgEik----------------egskVT~eHVrkAleei 1006 (1164)
T PTZ00112 964 CARKVANVSGDIRKALQICRKAFENK----------------RGQKIVPRDITEATNQL 1006 (1164)
T ss_pred HHHhhhhcCCHHHHHHHHHHHHHhhc----------------CCCccCHHHHHHHHHHH
Confidence 7775543322 33344555555321 11268889999888765
No 138
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.7e-13 Score=150.54 Aligned_cols=163 Identities=26% Similarity=0.336 Sum_probs=120.6
Q ss_pred CcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecc------cchh-
Q 004584 220 GIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNG------PEVL- 292 (744)
Q Consensus 220 ~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~------~~l~- 292 (744)
+=-|+++.+++| -+.++-... .|-...+-++|+||||+|||+++|.||+.++..+ +.++- +++-
T Consensus 412 DHYgm~dVKeRI-LEfiAV~kL-------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF-fRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 412 DHYGMEDVKERI-LEFIAVGKL-------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF-FRFSVGGMTDVAEIKG 482 (906)
T ss_pred cccchHHHHHHH-HHHHHHHhh-------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce-EEEeccccccHHhhcc
Confidence 357888888888 444433221 1234456688999999999999999999996444 43332 2222
Q ss_pred --cccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCcc-------
Q 004584 293 --SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE------- 363 (744)
Q Consensus 293 --~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~------- 363 (744)
..|+|....++-+-++......| +++|||||.+. ++.+.+ --..||+.+|.-.
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~NP---------liLiDEvDKlG--~g~qGD-------PasALLElLDPEQNanFlDH 544 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTENP---------LILIDEVDKLG--SGHQGD-------PASALLELLDPEQNANFLDH 544 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCCc---------eEEeehhhhhC--CCCCCC-------hHHHHHHhcChhhccchhhh
Confidence 26899999999988888877765 89999999997 222222 1134566665322
Q ss_pred ------CCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHH
Q 004584 364 ------SLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHT 412 (744)
Q Consensus 364 ------~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~ 412 (744)
..++|++|||+|..+.|+++|+. |++ .|+++-+..++...|.+.|+
T Consensus 545 YLdVp~DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 545 YLDVPVDLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred ccccccchhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhh
Confidence 23579999999999999999998 988 68999999999999999886
No 139
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=8e-13 Score=147.45 Aligned_cols=185 Identities=19% Similarity=0.196 Sum_probs=126.7
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhcCCCEEE-----------------Ec---ccccc-cccchhhHhhHHHHHHHHH
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVK-----------------II---SAESM-IGLHESTKCAQIVKVFEDA 590 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~-----------------v~---~~~~~-~g~~~~~~~~~i~~if~~a 590 (744)
..+.++||+||||||||++|+++|+..++..-. +. .++.+ +..........++++++.+
T Consensus 41 ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a 120 (507)
T PRK06645 41 RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESA 120 (507)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHH
Confidence 445789999999999999999999876542100 00 00100 1111123456788888887
Q ss_pred hc----CCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcC
Q 004584 591 YK----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVP 666 (744)
Q Consensus 591 ~~----~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p 666 (744)
.. +...|+||||+|.|. ...+++|+..|+..++ .+++|.+|+.++.+.+ .+.+|. ..++|+
T Consensus 121 ~~~P~~~~~KVvIIDEa~~Ls----------~~a~naLLk~LEepp~---~~vfI~aTte~~kI~~-tI~SRc-~~~ef~ 185 (507)
T PRK06645 121 EYKPLQGKHKIFIIDEVHMLS----------KGAFNALLKTLEEPPP---HIIFIFATTEVQKIPA-TIISRC-QRYDLR 185 (507)
T ss_pred HhccccCCcEEEEEEChhhcC----------HHHHHHHHHHHhhcCC---CEEEEEEeCChHHhhH-HHHhcc-eEEEcc
Confidence 53 346799999999984 4567778777776432 5555556666666655 445565 689999
Q ss_pred CCCHHHHHHHHHH----ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHH
Q 004584 667 TLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 739 (744)
Q Consensus 667 ~~~~~~~~~Il~~----~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~ 739 (744)
+++.+++..++++ .+...+++....+...++|++|.+++.++.+...+.. ....||.+++.+.+.
T Consensus 186 ~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~~~~~--------~~~~It~~~V~~llg 254 (507)
T PRK06645 186 RLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSAK--------SDNIISPQVINQMLG 254 (507)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc--------CCCCcCHHHHHHHHC
Confidence 9999998888775 3444566777778888899999999999998765421 123588888887764
No 140
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=1.3e-12 Score=145.81 Aligned_cols=200 Identities=19% Similarity=0.242 Sum_probs=141.9
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE--------
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK-------- 284 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~-------- 284 (744)
+-+|++ +.|.+..++.+ +.++..- +.+.++||+||||||||++|+++|+.+++....
T Consensus 17 P~~f~d--liGq~~vv~~L-~~ai~~~------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 17 PSNFAE--LQGQEVLVKVL-SYTILND------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 456888 99999998877 5555432 234579999999999999999999999753210
Q ss_pred ---Eecccchhcc----------cccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHH
Q 004584 285 ---IVNGPEVLSK----------FVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSI 351 (744)
Q Consensus 285 ---~v~~~~l~~~----------~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~ 351 (744)
.-+|..+... ........++++++.+... |..+ ...|++|||+|.+. ...
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~-P~~~---~~KVvIIDEa~~Ls-------------~~a 144 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYK-PLQG---KHKIFIIDEVHMLS-------------KGA 144 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhc-cccC---CcEEEEEEChhhcC-------------HHH
Confidence 0011111110 0112456788888777543 3322 34599999999874 235
Q ss_pred HHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHH
Q 004584 352 VNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELA 431 (744)
Q Consensus 352 ~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la 431 (744)
++.|+..++. +...+++|.+|+.++.+++.+++ |+. .++|..++.++...+++..+++... ..++..+..++
T Consensus 145 ~naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc~-~~ef~~ls~~el~~~L~~i~~~egi---~ie~eAL~~Ia 216 (507)
T PRK06645 145 FNALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RCQ-RYDLRRLSFEEIFKLLEYITKQENL---KTDIEALRIIA 216 (507)
T ss_pred HHHHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cce-EEEccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHH
Confidence 6677877773 45578888888889999999998 763 6899999999999999988875431 23445678899
Q ss_pred HhcCCCChHHHHHHHHHHHHHH
Q 004584 432 ARTKNYSGAELEGVAKSAVSFA 453 (744)
Q Consensus 432 ~~t~g~sg~dl~~l~~~A~~~a 453 (744)
+.+.| +.+++.++++.++.++
T Consensus 217 ~~s~G-slR~al~~Ldkai~~~ 237 (507)
T PRK06645 217 YKSEG-SARDAVSILDQAASMS 237 (507)
T ss_pred HHcCC-CHHHHHHHHHHHHHhh
Confidence 98877 8889888888887654
No 141
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=9.8e-13 Score=151.55 Aligned_cols=197 Identities=20% Similarity=0.255 Sum_probs=136.4
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCc------EEe
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEP------KIV 286 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~------~~v 286 (744)
.-+|++ |.|.++.++.+ +.++... +.++.+||+||||||||++||++|+.+++... ...
T Consensus 12 P~tFdd--IIGQe~Iv~~L-knaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 12 PATFEQ--MVGQSHVLHAL-TNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 457888 99999998887 6665432 22345799999999999999999999976421 000
Q ss_pred -cccchhcc-------ccc---chHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHH
Q 004584 287 -NGPEVLSK-------FVG---ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (744)
Q Consensus 287 -~~~~l~~~-------~~g---~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~L 355 (744)
+|-.+... +-+ .....+|++.+.+... +..+ ...|+||||+|.|. ....+.|
T Consensus 77 ~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~-P~~g---k~KViIIDEAh~LT-------------~eAqNAL 139 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYR-PSRG---RFKVYLIDEVHMLS-------------RSSFNAL 139 (944)
T ss_pred hHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhh-hhcC---CcEEEEEechHhcC-------------HHHHHHH
Confidence 01011100 011 1234567766655432 2222 23599999999983 4567888
Q ss_pred HHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcC
Q 004584 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (744)
Q Consensus 356 L~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~ 435 (744)
|..|+ ++..++.+|++|+.+..|.+.+++ |+ ..+.|..++.++..+.|+..+.... ....+..+..+++.+.
T Consensus 140 LKtLE--EPP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~Eg---I~~edeAL~lIA~~S~ 211 (944)
T PRK14949 140 LKTLE--EPPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQ---LPFEAEALTLLAKAAN 211 (944)
T ss_pred HHHHh--ccCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcC
Confidence 98888 345678888889999999999998 76 4789999999999988887765422 1234456788888887
Q ss_pred CCChHHHHHHHHHHH
Q 004584 436 NYSGAELEGVAKSAV 450 (744)
Q Consensus 436 g~sg~dl~~l~~~A~ 450 (744)
| +.+++.+++..+.
T Consensus 212 G-d~R~ALnLLdQal 225 (944)
T PRK14949 212 G-SMRDALSLTDQAI 225 (944)
T ss_pred C-CHHHHHHHHHHHH
Confidence 7 7788888887766
No 142
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1.1e-12 Score=147.02 Aligned_cols=199 Identities=18% Similarity=0.216 Sum_probs=137.1
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE-e-----
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI-V----- 286 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~-v----- 286 (744)
.-+|++ |.|.+..++.+ ..++... +.++.+||+||||||||++|+++|+.+++..... .
T Consensus 11 PktFdd--VIGQe~vv~~L-~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 11 PRNFNE--LVGQNHVSRAL-SSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 357888 99999998887 6666422 2345789999999999999999999997532110 0
Q ss_pred -ccc--------chhccc--ccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHH
Q 004584 287 -NGP--------EVLSKF--VGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (744)
Q Consensus 287 -~~~--------~l~~~~--~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~L 355 (744)
+|. +++.-. .......+|++...+... |..+ ...|+||||+|.|. ....+.|
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~-P~~g---k~KV~IIDEVh~LS-------------~~A~NAL 138 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYA-PTQG---RFKVYLIDEVHMLS-------------THSFNAL 138 (702)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhh-hhcC---CcEEEEEechHhcC-------------HHHHHHH
Confidence 011 111000 012344577776655432 2222 24699999999884 2356678
Q ss_pred HHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcC
Q 004584 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (744)
Q Consensus 356 L~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~ 435 (744)
+..++. ....+.+|.+|+.+..+.+.+++ |+. .++|..++.++..+.++..+++... ..++..+..+++.+.
T Consensus 139 LKtLEE--PP~~v~FILaTtd~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kEgI---~id~eAL~~IA~~S~ 210 (702)
T PRK14960 139 LKTLEE--PPEHVKFLFATTDPQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKEQI---AADQDAIWQIAESAQ 210 (702)
T ss_pred HHHHhc--CCCCcEEEEEECChHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcC
Confidence 888874 34567888888888889888887 764 7899999999999888877765331 234556888898887
Q ss_pred CCChHHHHHHHHHHHHH
Q 004584 436 NYSGAELEGVAKSAVSF 452 (744)
Q Consensus 436 g~sg~dl~~l~~~A~~~ 452 (744)
| +.+++.+++..++.+
T Consensus 211 G-dLRdALnLLDQaIay 226 (702)
T PRK14960 211 G-SLRDALSLTDQAIAY 226 (702)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 6 888888888776643
No 143
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1.8e-12 Score=141.07 Aligned_cols=198 Identities=18% Similarity=0.235 Sum_probs=133.9
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEe------
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIV------ 286 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v------ 286 (744)
+-+|++ |.|.++.++.+ +.++... +.++.+||+||||||||++|+++|+.+.+......
T Consensus 12 P~~~~~--iiGq~~~~~~l-~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 12 PQYFRD--IIGQKHIVTAI-SNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred CCchhh--ccChHHHHHHH-HHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 356888 99999998887 6655432 22446899999999999999999999864321100
Q ss_pred -ccc--------chhc--ccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHH
Q 004584 287 -NGP--------EVLS--KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (744)
Q Consensus 287 -~~~--------~l~~--~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~L 355 (744)
+|. ++.. .........++++.+.+.. .|.. +...|++|||+|.+. ....+.|
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~-~p~~---~~~kviIIDEa~~l~-------------~~a~naL 139 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYY-SPSK---SRFKVYLIDEVHMLS-------------RHSFNAL 139 (363)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhc-Cccc---CCceEEEEEChhhcC-------------HHHHHHH
Confidence 011 1110 0001233456666665542 2221 224599999999873 2345667
Q ss_pred HHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcC
Q 004584 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (744)
Q Consensus 356 L~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~ 435 (744)
|..++. ...++.+|.+|+.++.+.+++++ |+ ..++|++|+.++..++++..+++... ..++..+..++..+.
T Consensus 140 Lk~lEe--~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~---~i~~~al~~ia~~s~ 211 (363)
T PRK14961 140 LKTLEE--PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESI---DTDEYALKLIAYHAH 211 (363)
T ss_pred HHHHhc--CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcC
Confidence 877774 34567778888888889999988 76 47899999999999999887765431 234456778888887
Q ss_pred CCChHHHHHHHHHHHH
Q 004584 436 NYSGAELEGVAKSAVS 451 (744)
Q Consensus 436 g~sg~dl~~l~~~A~~ 451 (744)
| +.+++.++++.+..
T Consensus 212 G-~~R~al~~l~~~~~ 226 (363)
T PRK14961 212 G-SMRDALNLLEHAIN 226 (363)
T ss_pred C-CHHHHHHHHHHHHH
Confidence 6 77888888877654
No 144
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.48 E-value=8.3e-13 Score=132.65 Aligned_cols=166 Identities=17% Similarity=0.223 Sum_probs=116.2
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhcCCC------EEEEcccccccccch-hhHhhHHHHHHHHH-----hcC-CCeEE
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFP------FVKIISAESMIGLHE-STKCAQIVKVFEDA-----YKS-PLSII 598 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~~~~------~i~v~~~~~~~g~~~-~~~~~~i~~if~~a-----~~~-~~~il 598 (744)
.-.+++|||||||||||+.|+++|.+...+ +... +++...|.+. .++.+...++...- +.. ++.|+
T Consensus 55 ~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~l-naSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKii 133 (346)
T KOG0989|consen 55 RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLEL-NASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKII 133 (346)
T ss_pred cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhh-cccccccccchhhhhcCHHHHhhccccccCCCCCcceEE
Confidence 456789999999999999999999887552 2222 2233344332 22222222222211 112 33899
Q ss_pred EEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCCCCHHHHHHHHH
Q 004584 599 ILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLK 678 (744)
Q Consensus 599 ~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~ 678 (744)
+|||.|.|. ...+.+|...|+..+ +.+.+|-.+|..+.+-. .+.+| +..++|+++..+++...|+
T Consensus 134 IlDEcdsmt----------sdaq~aLrr~mE~~s---~~trFiLIcnylsrii~-pi~SR-C~KfrFk~L~d~~iv~rL~ 198 (346)
T KOG0989|consen 134 ILDECDSMT----------SDAQAALRRTMEDFS---RTTRFILICNYLSRIIR-PLVSR-CQKFRFKKLKDEDIVDRLE 198 (346)
T ss_pred EEechhhhh----------HHHHHHHHHHHhccc---cceEEEEEcCChhhCCh-HHHhh-HHHhcCCCcchHHHHHHHH
Confidence 999999984 678888998888743 46677778888876655 34445 4588999999866555555
Q ss_pred H----ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhc
Q 004584 679 Q----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQG 713 (744)
Q Consensus 679 ~----~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~ 713 (744)
. .+.-.+.+....+...++|++|+++.+++.++..
T Consensus 199 ~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~~ 237 (346)
T KOG0989|consen 199 KIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSLL 237 (346)
T ss_pred HHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhcc
Confidence 4 5667788888999999999999999999998874
No 145
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.47 E-value=7e-13 Score=154.64 Aligned_cols=198 Identities=17% Similarity=0.187 Sum_probs=129.8
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhc----------CCCEEEEcccccccc-cchhhHhhHHHHHHHHHhcCCCeEEEEe
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDS----------DFPFVKIISAESMIG-LHESTKCAQIVKVFEDAYKSPLSIIILD 601 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~----------~~~~i~v~~~~~~~g-~~~~~~~~~i~~if~~a~~~~~~il~iD 601 (744)
...++||+||||||||++|+.+|... +..++.++....+.| .+.++..+.++++|+.+.+..++|||||
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfID 285 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFID 285 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEec
Confidence 45678999999999999999999653 344455444444444 2355566688899998887788999999
Q ss_pred ccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCC-----CCccccccccceEEEcCCCCHHHHHHH
Q 004584 602 DIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSF-----LDSVGICDAFSVTYHVPTLKTDDAKKV 676 (744)
Q Consensus 602 Eid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~-----l~~~~l~~rf~~~i~~p~~~~~~~~~I 676 (744)
|||.|.+.+... .....+.+.|..++.+ ..+.+||+|+..+. .|+ .+.+||. .|++++|+.++...|
T Consensus 286 EIh~L~g~g~~~-~g~~d~~nlLkp~L~~-----g~i~vIgATt~~E~~~~~~~D~-AL~rRFq-~I~v~ePs~~~~~~I 357 (758)
T PRK11034 286 EIHTIIGAGAAS-GGQVDAANLIKPLLSS-----GKIRVIGSTTYQEFSNIFEKDR-ALARRFQ-KIDITEPSIEETVQI 357 (758)
T ss_pred cHHHHhccCCCC-CcHHHHHHHHHHHHhC-----CCeEEEecCChHHHHHHhhccH-HHHhhCc-EEEeCCCCHHHHHHH
Confidence 999998654321 1123344445555433 47899999998752 355 5667996 899999999999999
Q ss_pred HHHc--------cCCCHHHHHHHHHhCC------CCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHHHH
Q 004584 677 LKQL--------NVFAEEDVDSASEALN------DMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDM 741 (744)
Q Consensus 677 l~~~--------~~~~~~~~~~~~~~~~------~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~~~ 741 (744)
|+.. +....++....+..++ ..-..+++.+++.|+....-. ........|+.+++.+.+.+.
T Consensus 358 L~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~---~~~~~~~~v~~~~i~~v~~~~ 433 (758)
T PRK11034 358 INGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLM---PVSKRKKTVNVADIESVVARI 433 (758)
T ss_pred HHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhccC---cccccccccChhhHHHHHHHH
Confidence 9953 2333333333333222 223447888888886532110 001123458888888877643
No 146
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=1e-12 Score=149.56 Aligned_cols=198 Identities=20% Similarity=0.240 Sum_probs=136.9
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE-ec---c
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI-VN---G 288 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~-v~---~ 288 (744)
.-+|++ |.|.+..++.+ +.++..- +.+..+||+||+|+|||++|+.+|+.+++..... .. |
T Consensus 12 P~~f~d--ivGQe~vv~~L-~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 12 PQTFAE--VVGQEHVLTAL-ANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 357888 99999998877 6655432 2234589999999999999999999997632100 00 1
Q ss_pred ---c--------chh--cccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHH
Q 004584 289 ---P--------EVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (744)
Q Consensus 289 ---~--------~l~--~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~L 355 (744)
. +++ +.........+|++.+.+... +..+ ...|+||||+|.|. ....+.|
T Consensus 77 ~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~-p~~g---~~KV~IIDEah~Ls-------------~~a~NAL 139 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYA-PARG---RFKVYLIDEVHMLS-------------RHSFNAL 139 (647)
T ss_pred HHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhh-hhcC---CCEEEEEechHhCC-------------HHHHHHH
Confidence 0 111 000011234567776655432 2222 24599999999884 3467788
Q ss_pred HHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcC
Q 004584 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (744)
Q Consensus 356 L~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~ 435 (744)
|+.|+ ++..++.+|.+|+.+..|.+.+++ |+ ..+.|..++.++..+.|+..+.... ...++..+..++..+.
T Consensus 140 LKtLE--EPp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~---i~~e~~aL~~Ia~~s~ 211 (647)
T PRK07994 140 LKTLE--EPPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQ---IPFEPRALQLLARAAD 211 (647)
T ss_pred HHHHH--cCCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcC
Confidence 88888 455678888889999999999998 85 5889999999999888887765432 1234456778888887
Q ss_pred CCChHHHHHHHHHHHH
Q 004584 436 NYSGAELEGVAKSAVS 451 (744)
Q Consensus 436 g~sg~dl~~l~~~A~~ 451 (744)
| +.++...++..+..
T Consensus 212 G-s~R~Al~lldqaia 226 (647)
T PRK07994 212 G-SMRDALSLTDQAIA 226 (647)
T ss_pred C-CHHHHHHHHHHHHH
Confidence 7 77888888876653
No 147
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.47 E-value=4.1e-13 Score=143.25 Aligned_cols=147 Identities=18% Similarity=0.275 Sum_probs=99.9
Q ss_pred CCeEEEEeccchhhccCC-CCcchh-HHHHHHHHHHhccCC-------CCCCcEEEEEeCC----CCCCCCccccccccc
Q 004584 594 PLSIIILDDIERLLEYVP-IGPRFS-NIISQTMLVLLKRLP-------PKGKKLLVIGTTS----EVSFLDSVGICDAFS 660 (744)
Q Consensus 594 ~~~il~iDEid~l~~~~~-~g~~~~-~~~~~~Ll~~l~~~~-------~~~~~v~vi~~tn----~~~~l~~~~l~~rf~ 660 (744)
..+||||||||+|+...+ .|...| .-+|+.||.++++-. -...+++|||+-. .|..|-| .+.+||.
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIP-El~GR~P 327 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIP-ELQGRFP 327 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccH-HHhCccc
Confidence 457999999999997643 233344 459999999998832 1234678886653 2333333 6679999
Q ss_pred eEEEcCCCCHHHHHHHHHHc---------------c---CCCHHHHHHHHHhC-------CCCcHHHHHHHHHHHHhccc
Q 004584 661 VTYHVPTLKTDDAKKVLKQL---------------N---VFAEEDVDSASEAL-------NDMPIKKLYMLIEMAAQGEQ 715 (744)
Q Consensus 661 ~~i~~p~~~~~~~~~Il~~~---------------~---~~~~~~~~~~~~~~-------~~g~ir~l~~~l~~a~~~a~ 715 (744)
.++.+.+++.+++..||..- + .|+++.+.+++... .+.++|.|..+++.......
T Consensus 328 i~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~ 407 (443)
T PRK05201 328 IRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDIS 407 (443)
T ss_pred eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHh
Confidence 99999999999999999641 1 46666655554432 38899999999998876654
Q ss_pred CCcccccccCCCCcchhhHHHHHHHHh
Q 004584 716 GGAAEAIYSGREKIKISHFYDCLQDMV 742 (744)
Q Consensus 716 ~~~~~a~~~g~~~It~e~~~~al~~~~ 742 (744)
-..... ....-.||.+.+...+.+++
T Consensus 408 Fe~p~~-~~~~v~I~~~~V~~~l~~l~ 433 (443)
T PRK05201 408 FEAPDM-SGETVTIDAAYVDEKLGDLV 433 (443)
T ss_pred ccCCCC-CCCEEEECHHHHHHHHHHHH
Confidence 321111 11124588888888877654
No 148
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.47 E-value=1.5e-12 Score=138.88 Aligned_cols=182 Identities=26% Similarity=0.390 Sum_probs=126.6
Q ss_pred cCchHHHHHHHHHHHHhccCCChhHHhHh-CCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhc-cccc-
Q 004584 221 IGGLSAEFADIFRRAFASRVFPPHVTSKL-GIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS-KFVG- 297 (744)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~-g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~-~~~g- 297 (744)
|.|+++.++.+ ..++........+...+ +-.+|+++||+||||||||++|+++|+.+ +.+++.+++..+.. .|+|
T Consensus 14 IiGQ~eAkk~l-svAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l-~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 14 IIGQDNAKKSV-AIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred ccCHHHHHHHH-HHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh-CCeEEEeecceeecCCcccC
Confidence 89999998888 44443321111110111 12356899999999999999999999999 47778889888874 7888
Q ss_pred chHHHHHHHHHHHHh-------------------------------cc--------------------------------
Q 004584 298 ETEKNIRDLFADAEN-------------------------------DQ-------------------------------- 314 (744)
Q Consensus 298 ~~~~~i~~~f~~a~~-------------------------------~~-------------------------------- 314 (744)
+.+..++.+|+.|.. ..
T Consensus 92 dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 171 (441)
T TIGR00390 92 DVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIE 171 (441)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEE
Confidence 678889999888711 00
Q ss_pred --------ccc------C------------------------------------------------------CCCCeeEE
Q 004584 315 --------RTR------G------------------------------------------------------DQSDLHVI 326 (744)
Q Consensus 315 --------~~~------~------------------------------------------------------~~~~p~Il 326 (744)
+.. + ....-.||
T Consensus 172 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIV 251 (441)
T TIGR00390 172 IDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGII 251 (441)
T ss_pred EeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEE
Confidence 000 0 00123499
Q ss_pred EEcCcchhcccCCCCCCCCcc-HHHHHHHHHHhccCcc--------CCCcEEEEEEeC----CCCccchhhcCCCccceE
Q 004584 327 IFDEIDAICKSRGSTRDGTGV-HDSIVNQLLTKIDGVE--------SLNNVLLIGMTN----RKDMLDEALLRPGRLEVQ 393 (744)
Q Consensus 327 ~iDEid~l~~~~~~~~~~~~~-~~~~~~~LL~~~d~~~--------~~~~v~vI~~tn----~~~~id~al~r~gRf~~~ 393 (744)
||||||.|+.+..+.. ..+ ..-+...||..++|-. ...++++|++.- .|+++-|.| -|||...
T Consensus 252 fiDEiDKIa~~~~~~~--~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl--~GR~Pi~ 327 (441)
T TIGR00390 252 FIDEIDKIAKKGESSG--ADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPEL--QGRFPIR 327 (441)
T ss_pred EEEchhhhcccCCCCC--CCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHH--hCccceE
Confidence 9999999997653221 122 2346777899988732 345788888773 466677778 4599999
Q ss_pred EEEcCCCHHHHHHHH
Q 004584 394 VEISLPDENGRLQIL 408 (744)
Q Consensus 394 i~i~~Pd~~~r~~Il 408 (744)
+++..++.++..+||
T Consensus 328 v~L~~L~~edL~rIL 342 (441)
T TIGR00390 328 VELQALTTDDFERIL 342 (441)
T ss_pred EECCCCCHHHHHHHh
Confidence 999999999999998
No 149
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.47 E-value=3.2e-13 Score=146.57 Aligned_cols=168 Identities=21% Similarity=0.297 Sum_probs=124.3
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEccccc--------ccccchhhHhhHHH---HHHHHHhcCCCeEEE
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES--------MIGLHESTKCAQIV---KVFEDAYKSPLSIII 599 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~--------~~g~~~~~~~~~i~---~if~~a~~~~~~il~ 599 (744)
..+||++|++||||..+|++++..+ +.|||.++|+.. ++|+..+....+.. ..|+.|.+ +.||
T Consensus 164 ~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLf 240 (464)
T COG2204 164 DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFEQANG---GTLF 240 (464)
T ss_pred CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccccCcceeEcCC---ceEE
Confidence 4679999999999999999999876 569999999865 35544332222222 25555544 6799
Q ss_pred EeccchhhccCCCCcchhHHHHHHHHHHhccCC--------CCCCcEEEEEeCCCCCCCCccccccccc---------eE
Q 004584 600 LDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP--------PKGKKLLVIGTTSEVSFLDSVGICDAFS---------VT 662 (744)
Q Consensus 600 iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--------~~~~~v~vi~~tn~~~~l~~~~l~~rf~---------~~ 662 (744)
||||..+. -.+|..|+..|..-. .-..+|.||++||+. |....-.++|. ..
T Consensus 241 LDEI~~mp----------l~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~d--L~~~v~~G~FReDLyyRLnV~~ 308 (464)
T COG2204 241 LDEIGEMP----------LELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRD--LEEEVAAGRFREDLYYRLNVVP 308 (464)
T ss_pred eeccccCC----------HHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcC--HHHHHHcCCcHHHHHhhhccce
Confidence 99999874 567777777776422 112368999999986 44333334543 46
Q ss_pred EEcCCCC--HHHHHHHHHHc------------cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccC
Q 004584 663 YHVPTLK--TDDAKKVLKQL------------NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQG 716 (744)
Q Consensus 663 i~~p~~~--~~~~~~Il~~~------------~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~ 716 (744)
|++||+. .+|+.-+++++ ..++++.+..+..+-|+||+|+|.|+++++...++.
T Consensus 309 i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~~~ 376 (464)
T COG2204 309 LRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVILSEG 376 (464)
T ss_pred ecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCc
Confidence 8999998 88888888873 267788888888888999999999999999998764
No 150
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.47 E-value=1e-12 Score=131.94 Aligned_cols=197 Identities=20% Similarity=0.233 Sum_probs=127.3
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE-----Eec
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK-----IVN 287 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~-----~v~ 287 (744)
+-+|++ +.|.+..++-+ ..++.....| ++|||||||||||+.|+++|+++++.... ..+
T Consensus 32 Pkt~de--~~gQe~vV~~L-~~a~~~~~lp-------------~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln 95 (346)
T KOG0989|consen 32 PKTFDE--LAGQEHVVQVL-KNALLRRILP-------------HYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN 95 (346)
T ss_pred CCcHHh--hcchHHHHHHH-HHHHhhcCCc-------------eEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc
Confidence 446888 99999998887 5655543222 69999999999999999999999763221 223
Q ss_pred ccchhcccccchHHHHHHHHHHHHhccc-ccCCC-CCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCC
Q 004584 288 GPEVLSKFVGETEKNIRDLFADAENDQR-TRGDQ-SDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESL 365 (744)
Q Consensus 288 ~~~l~~~~~g~~~~~i~~~f~~a~~~~~-~~~~~-~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~ 365 (744)
.++..+..++ ..++ +-|+......+ ..+.. +.+.|++|||.|.+. ......|...|+.. .
T Consensus 96 aSderGisvv--r~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt-------------sdaq~aLrr~mE~~--s 157 (346)
T KOG0989|consen 96 ASDERGISVV--REKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT-------------SDAQAALRRTMEDF--S 157 (346)
T ss_pred ccccccccch--hhhh-cCHHHHhhccccccCCCCCcceEEEEechhhhh-------------HHHHHHHHHHHhcc--c
Confidence 4433332211 1122 22333332221 11222 233799999999985 34667788888853 4
Q ss_pred CcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHH
Q 004584 366 NNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGV 445 (744)
Q Consensus 366 ~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l 445 (744)
..+.+|..||..+.|.+.+.+ |+. .+.|+....+.....|+..+.+-.. -.++..+..+++.++| +-++....
T Consensus 158 ~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v---~~d~~al~~I~~~S~G-dLR~Ait~ 230 (346)
T KOG0989|consen 158 RTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGV---DIDDDALKLIAKISDG-DLRRAITT 230 (346)
T ss_pred cceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCC-cHHHHHHH
Confidence 568888899999999999988 766 4667777777677777766654331 1234457788888776 44554445
Q ss_pred HHHHH
Q 004584 446 AKSAV 450 (744)
Q Consensus 446 ~~~A~ 450 (744)
++.+.
T Consensus 231 Lqsls 235 (346)
T KOG0989|consen 231 LQSLS 235 (346)
T ss_pred HHHhh
Confidence 55443
No 151
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.7e-12 Score=147.47 Aligned_cols=173 Identities=16% Similarity=0.206 Sum_probs=120.0
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhcCCC-----------------------------EEEEcccccccccchhhHhhHHH
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDSDFP-----------------------------FVKIISAESMIGLHESTKCAQIV 584 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~~~~-----------------------------~i~v~~~~~~~g~~~~~~~~~i~ 584 (744)
+..+||+||+|+|||++|+++|+..++. ++.++.. ...+.+.++
T Consensus 38 ~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaa-------s~~~Vd~iR 110 (618)
T PRK14951 38 HHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAA-------SNRGVDEVQ 110 (618)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCcc-------cccCHHHHH
Confidence 3456999999999999999999876531 1222111 112345678
Q ss_pred HHHHHHhc----CCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccc
Q 004584 585 KVFEDAYK----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFS 660 (744)
Q Consensus 585 ~if~~a~~----~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~ 660 (744)
++.+.+.. +...|++|||+|.|. ...++.|+..|+..+. .+.+|.+|+.+..+.. .+++|.
T Consensus 111 eli~~~~~~p~~g~~KV~IIDEvh~Ls----------~~a~NaLLKtLEEPP~---~~~fIL~Ttd~~kil~-TIlSRc- 175 (618)
T PRK14951 111 QLLEQAVYKPVQGRFKVFMIDEVHMLT----------NTAFNAMLKTLEEPPE---YLKFVLATTDPQKVPV-TVLSRC- 175 (618)
T ss_pred HHHHHHHhCcccCCceEEEEEChhhCC----------HHHHHHHHHhcccCCC---CeEEEEEECCchhhhH-HHHHhc-
Confidence 88777643 336799999999984 5567778877776532 4455555566655544 355554
Q ss_pred eEEEcCCCCHHHHHHHHHH----ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHH
Q 004584 661 VTYHVPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYD 736 (744)
Q Consensus 661 ~~i~~p~~~~~~~~~Il~~----~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~ 736 (744)
..++|.+++.+++...+++ .+...+++....+...++|++|.++++++.+.... ...||.+++.+
T Consensus 176 ~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia~~-----------~~~It~~~V~~ 244 (618)
T PRK14951 176 LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFG-----------SGQLQEAAVRQ 244 (618)
T ss_pred eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------CCCcCHHHHHH
Confidence 7999999998888877765 34555667777788889999999999998766542 23577777766
Q ss_pred HHH
Q 004584 737 CLQ 739 (744)
Q Consensus 737 al~ 739 (744)
.+.
T Consensus 245 ~Lg 247 (618)
T PRK14951 245 MLG 247 (618)
T ss_pred HHc
Confidence 553
No 152
>PRK06893 DNA replication initiation factor; Validated
Probab=99.46 E-value=2.8e-12 Score=130.44 Aligned_cols=162 Identities=11% Similarity=0.120 Sum_probs=103.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhc--CCCcEEecccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcch
Q 004584 256 GMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDA 333 (744)
Q Consensus 256 giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~ 333 (744)
.++||||||||||++++++|+++. +....+++..+. .....++++... ...+|+|||++.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~~~----------~~dlLilDDi~~ 102 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFSPAVLENLE----------QQDLVCLDDLQA 102 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhhHHHHhhcc----------cCCEEEEeChhh
Confidence 589999999999999999999872 233344443211 111112222222 135999999999
Q ss_pred hcccCCCCCCCCccHHHHHHHHHHhccCccCCCc-EEEEEEeCCCCccc---hhhcCCCccceEEEEcCCCHHHHHHHHH
Q 004584 334 ICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNN-VLLIGMTNRKDMLD---EALLRPGRLEVQVEISLPDENGRLQILQ 409 (744)
Q Consensus 334 l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~-v~vI~~tn~~~~id---~al~r~gRf~~~i~i~~Pd~~~r~~Il~ 409 (744)
+..+. .....+..+++. ....+. +++++++..|..++ +.++++.++...+.++.||.++|.+|++
T Consensus 103 ~~~~~--------~~~~~l~~l~n~---~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 103 VIGNE--------EWELAIFDLFNR---IKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred hcCCh--------HHHHHHHHHHHH---HHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 86332 112223333333 222233 45566666676654 8898855556788999999999999999
Q ss_pred HHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHH
Q 004584 410 IHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAV 450 (744)
Q Consensus 410 ~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~ 450 (744)
.++.... ...++..++.|++...| +.+.+..+++...
T Consensus 172 ~~a~~~~---l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~ 208 (229)
T PRK06893 172 RNAYQRG---IELSDEVANFLLKRLDR-DMHTLFDALDLLD 208 (229)
T ss_pred HHHHHcC---CCCCHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 8775432 12355568889988876 7778877777653
No 153
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.46 E-value=1.2e-12 Score=148.59 Aligned_cols=222 Identities=19% Similarity=0.242 Sum_probs=137.5
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhc---------CCCc
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---------GMEP 283 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~---------~~~~ 283 (744)
..+|++ +-|.+..++.+ +.+... +.+.++||+||||||||++||++.+... ..++
T Consensus 61 p~~f~~--iiGqs~~i~~l-~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~f 124 (531)
T TIGR02902 61 PKSFDE--IIGQEEGIKAL-KAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAF 124 (531)
T ss_pred cCCHHH--eeCcHHHHHHH-HHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCE
Confidence 456888 89999998888 443211 2346899999999999999999987542 2356
Q ss_pred EEecccch--hcc-----cccchHHHH---HHHHHHHHhcccccC--CCCCeeEEEEcCcchhcccCCCCCCCCccHHHH
Q 004584 284 KIVNGPEV--LSK-----FVGETEKNI---RDLFADAENDQRTRG--DQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSI 351 (744)
Q Consensus 284 ~~v~~~~l--~~~-----~~g~~~~~i---~~~f~~a~~~~~~~~--~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~ 351 (744)
+.++|... ..+ ..|.....+ ...|..+....+..+ ......+|||||+|.+.+ ..
T Consensus 125 i~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~-------------~~ 191 (531)
T TIGR02902 125 VEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHP-------------VQ 191 (531)
T ss_pred EEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCH-------------HH
Confidence 66776531 110 011000000 000000000000000 011124999999999853 23
Q ss_pred HHHHHHhccCc--------------------------cCCCcEEEEE-EeCCCCccchhhcCCCccceEEEEcCCCHHHH
Q 004584 352 VNQLLTKIDGV--------------------------ESLNNVLLIG-MTNRKDMLDEALLRPGRLEVQVEISLPDENGR 404 (744)
Q Consensus 352 ~~~LL~~~d~~--------------------------~~~~~v~vI~-~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r 404 (744)
.+.||..|+.- ....++.+|+ ||+.++.++|++++ |+. .+.|++++.+++
T Consensus 192 q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei 268 (531)
T TIGR02902 192 MNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEI 268 (531)
T ss_pred HHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHH
Confidence 33344333210 0012345555 55679999999998 875 788999999999
Q ss_pred HHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHHh
Q 004584 405 LQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALY 484 (744)
Q Consensus 405 ~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~ 484 (744)
.+|++..+++... ..++..++.++..+. +++++.++++.|+..|..+. ...|+.+|+..++.
T Consensus 269 ~~Il~~~a~k~~i---~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~~-------------~~~It~~dI~~vl~ 330 (531)
T TIGR02902 269 KEIAKNAAEKIGI---NLEKHALELIVKYAS--NGREAVNIVQLAAGIALGEG-------------RKRILAEDIEWVAE 330 (531)
T ss_pred HHHHHHHHHHcCC---CcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhCC-------------CcEEcHHHHHHHhC
Confidence 9999998877542 123445667776654 79999999999998776532 24699999999886
No 154
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=1.4e-12 Score=146.59 Aligned_cols=199 Identities=18% Similarity=0.205 Sum_probs=135.9
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE-e-----
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI-V----- 286 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~-v----- 286 (744)
+-+|++ |.|.+..++.+ +.++..- +.+..+||+||||||||++|+.+|+.+++..... -
T Consensus 12 P~~f~d--ivGq~~v~~~L-~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 12 PRCFQE--VIGQAPVVRAL-SNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred CCCHHH--hcCCHHHHHHH-HHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 447888 99999999988 6655432 2234689999999999999999999997542110 0
Q ss_pred -ccc--------chhc--ccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHH
Q 004584 287 -NGP--------EVLS--KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (744)
Q Consensus 287 -~~~--------~l~~--~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~L 355 (744)
+|. +++. .........+|++.+.+.. .|..+ ...|+||||+|.+. ....+.|
T Consensus 77 ~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~-~p~~~---~~kV~iIDE~~~ls-------------~~a~naL 139 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPY-APTKG---RFKVYLIDEVHMLS-------------GHSFNAL 139 (509)
T ss_pred HHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhh-ccccC---CcEEEEEEChHhcC-------------HHHHHHH
Confidence 000 0110 0011234456777665543 23322 24599999999984 2356778
Q ss_pred HHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcC
Q 004584 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (744)
Q Consensus 356 L~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~ 435 (744)
|..|+. ...++.+|.+|+.+..+.+.+++ |+. .++|..++.++....++..+++... ..++..+..+++.+.
T Consensus 140 Lk~LEe--pp~~~~fIlattd~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~l~~il~~egi---~~~~~al~~ia~~s~ 211 (509)
T PRK14958 140 LKTLEE--PPSHVKFILATTDHHKLPVTVLS--RCL-QFHLAQLPPLQIAAHCQHLLKEENV---EFENAALDLLARAAN 211 (509)
T ss_pred HHHHhc--cCCCeEEEEEECChHhchHHHHH--Hhh-hhhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcC
Confidence 888884 34568888888888899888988 663 6789988888888887777665431 234456788888887
Q ss_pred CCChHHHHHHHHHHHHH
Q 004584 436 NYSGAELEGVAKSAVSF 452 (744)
Q Consensus 436 g~sg~dl~~l~~~A~~~ 452 (744)
| +.+++.++++.+..+
T Consensus 212 G-slR~al~lLdq~ia~ 227 (509)
T PRK14958 212 G-SVRDALSLLDQSIAY 227 (509)
T ss_pred C-cHHHHHHHHHHHHhc
Confidence 6 888988888877643
No 155
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2.2e-12 Score=142.74 Aligned_cols=194 Identities=19% Similarity=0.229 Sum_probs=140.5
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCC----------
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME---------- 282 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~---------- 282 (744)
+-+|++ +.|.+..++.+ +.++..- +.++++||+||||+|||++|+.+|+.+++..
T Consensus 9 P~~f~d--liGQe~vv~~L-~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 9 PSSFKD--LVGQDVLVRIL-RNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 357888 99999988877 6665432 3345899999999999999999999886421
Q ss_pred -------------cEEecccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHH
Q 004584 283 -------------PKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHD 349 (744)
Q Consensus 283 -------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~ 349 (744)
++.+++++ ..+...+|++.+.+... |.. +...|++|||+|.|. .
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~-P~~---~~~KVvIIDEah~Ls-------------~ 130 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYL-PIS---SKFKVYIIDEVHMLS-------------N 130 (491)
T ss_pred HHHHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhc-ccc---CCceEEEEeChHhCC-------------H
Confidence 11222211 12345678887776543 332 235699999999873 2
Q ss_pred HHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHH
Q 004584 350 SIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQE 429 (744)
Q Consensus 350 ~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~ 429 (744)
...+.||..++. +...+.+|.+|+.++.+.+.+++ |+. .++|..++.++..+.++..+++... ..++..+..
T Consensus 131 ~A~NaLLK~LEe--Pp~~v~fIlatte~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~Egi---~i~~eAL~l 202 (491)
T PRK14964 131 SAFNALLKTLEE--PAPHVKFILATTEVKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKENI---EHDEESLKL 202 (491)
T ss_pred HHHHHHHHHHhC--CCCCeEEEEEeCChHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHcCC---CCCHHHHHH
Confidence 456788888884 44578888888888999999998 764 6899999999999988887765431 234556888
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHH
Q 004584 430 LAARTKNYSGAELEGVAKSAVSFA 453 (744)
Q Consensus 430 la~~t~g~sg~dl~~l~~~A~~~a 453 (744)
+++.+.| +.+++.++++.+..+.
T Consensus 203 Ia~~s~G-slR~alslLdqli~y~ 225 (491)
T PRK14964 203 IAENSSG-SMRNALFLLEQAAIYS 225 (491)
T ss_pred HHHHcCC-CHHHHHHHHHHHHHhc
Confidence 8888876 8888888888876543
No 156
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=1.5e-12 Score=147.38 Aligned_cols=182 Identities=16% Similarity=0.167 Sum_probs=121.5
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhcCCCEE-------E------Ecc---cccc-cccchhhHhhHHHHHHHHHhc--
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFV-------K------IIS---AESM-IGLHESTKCAQIVKVFEDAYK-- 592 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i-------~------v~~---~~~~-~g~~~~~~~~~i~~if~~a~~-- 592 (744)
..+..+||+||+|+|||++|+++|+..++.-. . +.. ++.+ +..........++++++.+..
T Consensus 36 rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P 115 (709)
T PRK08691 36 RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAP 115 (709)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhh
Confidence 34567899999999999999999987543210 0 000 0000 000111233467787776532
Q ss_pred --CCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCCCCH
Q 004584 593 --SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKT 670 (744)
Q Consensus 593 --~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~~~ 670 (744)
....|+||||+|.|. ...++.|+..|+..+. .+.+|.+|+.+..+.. .+++|+ ..++|++++.
T Consensus 116 ~~gk~KVIIIDEad~Ls----------~~A~NALLKtLEEPp~---~v~fILaTtd~~kL~~-TIrSRC-~~f~f~~Ls~ 180 (709)
T PRK08691 116 TAGKYKVYIIDEVHMLS----------KSAFNAMLKTLEEPPE---HVKFILATTDPHKVPV-TVLSRC-LQFVLRNMTA 180 (709)
T ss_pred hhCCcEEEEEECccccC----------HHHHHHHHHHHHhCCC---CcEEEEEeCCccccch-HHHHHH-hhhhcCCCCH
Confidence 345899999999873 4566778888877532 4455556666665554 344665 5789999998
Q ss_pred HHHHHHHHH----ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHH
Q 004584 671 DDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 739 (744)
Q Consensus 671 ~~~~~Il~~----~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~ 739 (744)
+++...|++ .+...+++....+.+.++|++|.++++++.+.... ...|+.+++.+.+.
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g-----------~g~It~e~V~~lLG 242 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALG-----------SGKVAENDVRQMIG 242 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhc-----------CCCcCHHHHHHHHc
Confidence 887777764 45556677778888888999999999998877642 23477777766654
No 157
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=3.4e-12 Score=144.61 Aligned_cols=173 Identities=16% Similarity=0.216 Sum_probs=121.3
Q ss_pred cee-eeeecCCCCChhHHHHHHHhhcCCC--------------------------EEEEcccccccccchhhHhhHHHHH
Q 004584 534 LVT-CLLEGPSGSGKTALAATAGIDSDFP--------------------------FVKIISAESMIGLHESTKCAQIVKV 586 (744)
Q Consensus 534 ~~~-~Ll~GppG~GKT~la~~~a~~~~~~--------------------------~i~v~~~~~~~g~~~~~~~~~i~~i 586 (744)
..| +||+||+|||||++|+++|+...+. ++.++... ......++++
T Consensus 34 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas-------~~gvd~iRel 106 (584)
T PRK14952 34 INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAAS-------HGGVDDTREL 106 (584)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEecccc-------ccCHHHHHHH
Confidence 444 6999999999999999999875431 22221111 1123456666
Q ss_pred HHHHh----cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceE
Q 004584 587 FEDAY----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVT 662 (744)
Q Consensus 587 f~~a~----~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~ 662 (744)
.+.+. .+...|+||||+|.|. ...+++|+..|+..+. .+++|.+|+.++.+.+ .+++| +..
T Consensus 107 ~~~~~~~P~~~~~KVvIIDEah~Lt----------~~A~NALLK~LEEpp~---~~~fIL~tte~~kll~-TI~SR-c~~ 171 (584)
T PRK14952 107 RDRAFYAPAQSRYRIFIVDEAHMVT----------TAGFNALLKIVEEPPE---HLIFIFATTEPEKVLP-TIRSR-THH 171 (584)
T ss_pred HHHHHhhhhcCCceEEEEECCCcCC----------HHHHHHHHHHHhcCCC---CeEEEEEeCChHhhHH-HHHHh-ceE
Confidence 55543 3456899999999984 5578888888887543 5666666677665554 45566 679
Q ss_pred EEcCCCCHHHHHHHHHH----ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHH
Q 004584 663 YHVPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCL 738 (744)
Q Consensus 663 i~~p~~~~~~~~~Il~~----~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al 738 (744)
++|.+++.+++.+.+.+ .+...+++...++...++|++|.++++++.+.... +...||.+++.+.+
T Consensus 172 ~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~~~----------~~~~It~~~v~~ll 241 (584)
T PRK14952 172 YPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGA----------ADTHVTYQRALGLL 241 (584)
T ss_pred EEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcc----------CCCCcCHHHHHHHH
Confidence 99999998887776665 35555677778888899999999999999876542 23457777776654
No 158
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.45 E-value=1.7e-12 Score=138.65 Aligned_cols=183 Identities=27% Similarity=0.380 Sum_probs=127.8
Q ss_pred cCchHHHHHHHHHHHHhccCCChhHHhHhCC-CCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhc-cccc-
Q 004584 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGI-KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS-KFVG- 297 (744)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~-~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~-~~~g- 297 (744)
|.|+++.++.+ ..++........+...+.. ..|+++||+||||||||++|+++|+.+ +.+++.+++.++.. .|.|
T Consensus 17 IiGQe~Akkal-avAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l-~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 17 IIGQDDAKRAV-AIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cCCHHHHHHHH-HHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh-CChheeecchhhccCCcccC
Confidence 99999999888 4444322111111011110 135899999999999999999999999 57788899988886 7999
Q ss_pred chHHHHHHHHHHHHhccc--------------------------------------------------------------
Q 004584 298 ETEKNIRDLFADAENDQR-------------------------------------------------------------- 315 (744)
Q Consensus 298 ~~~~~i~~~f~~a~~~~~-------------------------------------------------------------- 315 (744)
+.+..++++|+.|....+
T Consensus 95 d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 174 (443)
T PRK05201 95 DVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIE 174 (443)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEE
Confidence 668889999998820000
Q ss_pred ----c-cC-----C----------------------------------------------------------CCCeeEEE
Q 004584 316 ----T-RG-----D----------------------------------------------------------QSDLHVII 327 (744)
Q Consensus 316 ----~-~~-----~----------------------------------------------------------~~~p~Il~ 327 (744)
. .+ . ...-.|+|
T Consensus 175 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVf 254 (443)
T PRK05201 175 IEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVF 254 (443)
T ss_pred EEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 0 00 0 01234999
Q ss_pred EcCcchhcccCCCCCCCCcc-HHHHHHHHHHhccCc--------cCCCcEEEEEEe----CCCCccchhhcCCCccceEE
Q 004584 328 FDEIDAICKSRGSTRDGTGV-HDSIVNQLLTKIDGV--------ESLNNVLLIGMT----NRKDMLDEALLRPGRLEVQV 394 (744)
Q Consensus 328 iDEid~l~~~~~~~~~~~~~-~~~~~~~LL~~~d~~--------~~~~~v~vI~~t----n~~~~id~al~r~gRf~~~i 394 (744)
|||||.|+.+.++. +..+ ..-+...||..++|- -...++++||+. ..|+++-|.|. |||...+
T Consensus 255 iDEiDKIa~~~~~~--~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v 330 (443)
T PRK05201 255 IDEIDKIAARGGSS--GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRV 330 (443)
T ss_pred EEcchhhcccCCCC--CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEE
Confidence 99999999775432 1122 234677799999873 234578888876 34666778884 5999999
Q ss_pred EEcCCCHHHHHHHHH
Q 004584 395 EISLPDENGRLQILQ 409 (744)
Q Consensus 395 ~i~~Pd~~~r~~Il~ 409 (744)
.+..++.++..+||.
T Consensus 331 ~L~~L~~~dL~~ILt 345 (443)
T PRK05201 331 ELDALTEEDFVRILT 345 (443)
T ss_pred ECCCCCHHHHHHHhc
Confidence 999999999999983
No 159
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2.8e-12 Score=141.91 Aligned_cols=175 Identities=23% Similarity=0.254 Sum_probs=125.6
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhcCC------------------------CEEEEcccccccccchhhHhhHHHHHH
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDSDF------------------------PFVKIISAESMIGLHESTKCAQIVKVF 587 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~~~------------------------~~i~v~~~~~~~g~~~~~~~~~i~~if 587 (744)
..+.++||+||+|+|||++|+++|+..++ +++.++..+ ....+.++++.
T Consensus 33 ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas-------~~~vddIR~Ii 105 (491)
T PRK14964 33 KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAAS-------NTSVDDIKVIL 105 (491)
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEeccc-------CCCHHHHHHHH
Confidence 34568999999999999999999975422 233333221 12345688888
Q ss_pred HHHhc----CCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEE
Q 004584 588 EDAYK----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTY 663 (744)
Q Consensus 588 ~~a~~----~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i 663 (744)
+.+.. +.+.|++|||+|.|. ...+++|+..|+..++ .+.+|.+|+.++.+.+ .+++|+ ..+
T Consensus 106 e~~~~~P~~~~~KVvIIDEah~Ls----------~~A~NaLLK~LEePp~---~v~fIlatte~~Kl~~-tI~SRc-~~~ 170 (491)
T PRK14964 106 ENSCYLPISSKFKVYIIDEVHMLS----------NSAFNALLKTLEEPAP---HVKFILATTEVKKIPV-TIISRC-QRF 170 (491)
T ss_pred HHHHhccccCCceEEEEeChHhCC----------HHHHHHHHHHHhCCCC---CeEEEEEeCChHHHHH-HHHHhh-eee
Confidence 77643 346799999999984 4567888888887643 4555556666655544 445555 579
Q ss_pred EcCCCCHHHHHHHHHH----ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHH
Q 004584 664 HVPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 739 (744)
Q Consensus 664 ~~p~~~~~~~~~Il~~----~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~ 739 (744)
+|.+++.+++...+++ .+...+++....+...++|++|.+++.++.+.... ...||.+++.+.+.
T Consensus 171 ~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~y~-----------~~~It~e~V~~llg 239 (491)
T PRK14964 171 DLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYS-----------NNKISEKSVRDLLG 239 (491)
T ss_pred ecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------CCCCCHHHHHHHHc
Confidence 9999998888777775 35556677777888888999999999999887652 13588888887653
No 160
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.44 E-value=1.2e-12 Score=133.63 Aligned_cols=178 Identities=17% Similarity=0.213 Sum_probs=115.6
Q ss_pred eeeeeecCCCCChhHHHHHHHhhcC---CCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhhccCC
Q 004584 535 VTCLLEGPSGSGKTALAATAGIDSD---FPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVP 611 (744)
Q Consensus 535 ~~~Ll~GppG~GKT~la~~~a~~~~---~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~~ 611 (744)
.+++|+||||||||++++++++... .....+.... .. ....++++.... ..+|+|||++.+.+.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~-~~--------~~~~~~~~~~~~--~dlliiDdi~~~~~~-- 112 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK-RA--------WFVPEVLEGMEQ--LSLVCIDNIECIAGD-- 112 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH-Hh--------hhhHHHHHHhhh--CCEEEEeChhhhcCC--
Confidence 5899999999999999999987643 2222221111 10 011222222221 368999999998521
Q ss_pred CCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCc--cccccccc--eEEEcCCCCHHHHHHHHHH----ccCC
Q 004584 612 IGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDS--VGICDAFS--VTYHVPTLKTDDAKKVLKQ----LNVF 683 (744)
Q Consensus 612 ~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~--~~l~~rf~--~~i~~p~~~~~~~~~Il~~----~~~~ 683 (744)
......|..+++...+.++.-+++++++.|..+.. ..+++|+. ..+.+++|+.+++.+++++ .+..
T Consensus 113 ------~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~ 186 (235)
T PRK08084 113 ------ELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFE 186 (235)
T ss_pred ------HHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCC
Confidence 22333344444443222322355555555554332 37788885 7899999999999999987 2466
Q ss_pred CHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHH
Q 004584 684 AEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 739 (744)
Q Consensus 684 ~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~ 739 (744)
.++++...+....++++|.++.+++.....+-. ....||.+.+++++.
T Consensus 187 l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~l~--------~~~~it~~~~k~~l~ 234 (235)
T PRK08084 187 LPEDVGRFLLKRLDREMRTLFMTLDQLDRASIT--------AQRKLTIPFVKEILK 234 (235)
T ss_pred CCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh--------cCCCCCHHHHHHHHc
Confidence 788999999999999999999999986533211 224499999988864
No 161
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.44 E-value=2.4e-12 Score=131.07 Aligned_cols=195 Identities=16% Similarity=0.197 Sum_probs=121.6
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEeccc
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGP 289 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~ 289 (744)
...+|++.-.++.+..++++ +++.. ...+.+++|+||||||||++|+++++.+. +..+.++++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l-~~~~~-------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAAL-RQLAA-------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA 75 (226)
T ss_pred CchhhcCcCcCCcHHHHHHH-HHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH
Confidence 35667775335666666666 55432 13456899999999999999999998873 3456677777
Q ss_pred chhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEE
Q 004584 290 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVL 369 (744)
Q Consensus 290 ~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~ 369 (744)
++.... ..++..... ..+|+|||+|.+.... . ....+..++..+ ...+..+
T Consensus 76 ~~~~~~--------~~~~~~~~~----------~~lLvIDdi~~l~~~~-------~-~~~~L~~~l~~~---~~~~~~i 126 (226)
T TIGR03420 76 ELAQAD--------PEVLEGLEQ----------ADLVCLDDVEAIAGQP-------E-WQEALFHLYNRV---REAGGRL 126 (226)
T ss_pred HHHHhH--------HHHHhhccc----------CCEEEEeChhhhcCCh-------H-HHHHHHHHHHHH---HHcCCeE
Confidence 665321 223322211 2499999999874211 0 122222333322 2222334
Q ss_pred EEEEeCCCCcc---chhhcCCCcc--ceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHH
Q 004584 370 LIGMTNRKDML---DEALLRPGRL--EVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEG 444 (744)
Q Consensus 370 vI~~tn~~~~i---d~al~r~gRf--~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~ 444 (744)
|+.++..+..+ ++.+.+ |+ ...+.+++|+.+++..+++.+..+... ..++..+..|++.+. -+.+++.+
T Consensus 127 Iits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~~~~l~~L~~~~~-gn~r~L~~ 200 (226)
T TIGR03420 127 LIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGL---QLPDEVADYLLRHGS-RDMGSLMA 200 (226)
T ss_pred EEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhcc-CCHHHHHH
Confidence 44444344333 267776 55 468999999999999999877654321 234445788888654 48999999
Q ss_pred HHHHHHHHHHH
Q 004584 445 VAKSAVSFALN 455 (744)
Q Consensus 445 l~~~A~~~a~~ 455 (744)
+++.+...+..
T Consensus 201 ~l~~~~~~~~~ 211 (226)
T TIGR03420 201 LLDALDRASLA 211 (226)
T ss_pred HHHHHHHHHHH
Confidence 99987765544
No 162
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.44 E-value=1.1e-12 Score=147.10 Aligned_cols=191 Identities=15% Similarity=0.175 Sum_probs=125.0
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhc-----CCCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccchh
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDS-----DFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERL 606 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~-----~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l 606 (744)
....+++||||||||||+++++++++. +..++.+.+.+. ..............-|....+ .+.+|+|||++.+
T Consensus 146 ~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l 223 (450)
T PRK00149 146 KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF-TNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFL 223 (450)
T ss_pred ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH-HHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhh
Confidence 345679999999999999999999875 445666655442 211111100001122333333 4679999999998
Q ss_pred hccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCc--cccccccc--eEEEcCCCCHHHHHHHHHHc--
Q 004584 607 LEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDS--VGICDAFS--VTYHVPTLKTDDAKKVLKQL-- 680 (744)
Q Consensus 607 ~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~--~~l~~rf~--~~i~~p~~~~~~~~~Il~~~-- 680 (744)
.+. ...++.++..++.+...+ +.+||+++..|..++. ..+++||. ..+.+++|+.+++.+|+++.
T Consensus 224 ~~~--------~~~~~~l~~~~n~l~~~~-~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~ 294 (450)
T PRK00149 224 AGK--------ERTQEEFFHTFNALHEAG-KQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAE 294 (450)
T ss_pred cCC--------HHHHHHHHHHHHHHHHCC-CcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHH
Confidence 622 223445555555443333 3456656555554332 25778986 58999999999999999974
Q ss_pred --cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHHHH
Q 004584 681 --NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDM 741 (744)
Q Consensus 681 --~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~~~ 741 (744)
+...++++...++....+++|.+..++......+.. ....||.+.+.+++.++
T Consensus 295 ~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~--------~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 295 EEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASL--------TGKPITLELAKEALKDL 349 (450)
T ss_pred HcCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHh--------hCCCCCHHHHHHHHHHh
Confidence 355678889999999999999998888877655432 12347777777777754
No 163
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=4e-12 Score=143.38 Aligned_cols=172 Identities=16% Similarity=0.163 Sum_probs=119.0
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhcCCC------------------------EEEEcccccccccchhhHhhHHHHHHHH
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDSDFP------------------------FVKIISAESMIGLHESTKCAQIVKVFED 589 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~~~~------------------------~i~v~~~~~~~g~~~~~~~~~i~~if~~ 589 (744)
+.++||+||+|||||++|+++|+...+. ++.++... ......++++.+.
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~-------~~~Id~iR~L~~~ 110 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGAS-------NRGIDDAKRLKEA 110 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEeccc-------ccCHHHHHHHHHH
Confidence 4688999999999999999999876542 22222111 1122344544333
Q ss_pred H----hcCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEc
Q 004584 590 A----YKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHV 665 (744)
Q Consensus 590 a----~~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~ 665 (744)
+ ..+...||||||+|.|. ...++.|+..|+..+ ..+++|.+|+.+..+.. .+++|+ ..++|
T Consensus 111 ~~~~p~~g~~kVIIIDEad~Lt----------~~a~naLLk~LEEP~---~~~ifILaTt~~~kll~-TI~SRc-q~i~F 175 (624)
T PRK14959 111 IGYAPMEGRYKVFIIDEAHMLT----------REAFNALLKTLEEPP---ARVTFVLATTEPHKFPV-TIVSRC-QHFTF 175 (624)
T ss_pred HHhhhhcCCceEEEEEChHhCC----------HHHHHHHHHHhhccC---CCEEEEEecCChhhhhH-HHHhhh-hcccc
Confidence 3 23456899999999984 456677888877643 35666777777666554 355665 48899
Q ss_pred CCCCHHHHHHHHHH----ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHH
Q 004584 666 PTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCL 738 (744)
Q Consensus 666 p~~~~~~~~~Il~~----~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al 738 (744)
++++.+++..+|+. .+...+++...++...+.|++|.++++++.+... +...||.+++++++
T Consensus 176 ~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll~~-----------g~~~It~d~V~~~l 241 (624)
T PRK14959 176 TRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLAL-----------GESRLTIDGARGVL 241 (624)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-----------cCCCcCHHHHHHHh
Confidence 99999999888875 3444566777788888999999999999876432 33468888766554
No 164
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=2e-12 Score=146.42 Aligned_cols=199 Identities=21% Similarity=0.222 Sum_probs=139.2
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE-eccc--
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI-VNGP-- 289 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~-v~~~-- 289 (744)
.-+|++ |.|.++.++.| +.++... +.++.+||+||+|||||++|+.+|+.+++..... ..|.
T Consensus 12 P~tFdd--IIGQe~vv~~L-~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 12 PKTFAD--LVGQEHVVKAL-QNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred CCCHHH--HcCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 457888 99999999888 6666532 3356799999999999999999999986542110 0010
Q ss_pred ------------chh--cccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHH
Q 004584 290 ------------EVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (744)
Q Consensus 290 ------------~l~--~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~L 355 (744)
+++ +...+.....++++++.+... |..+ ...|+||||+|.+. ....+.|
T Consensus 77 ~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~-P~~g---k~KVIIIDEad~Ls-------------~~A~NAL 139 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYA-PTAG---KYKVYIIDEVHMLS-------------KSAFNAM 139 (709)
T ss_pred HHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhh-hhhC---CcEEEEEECccccC-------------HHHHHHH
Confidence 111 001122345677877765432 2222 24599999999863 2456778
Q ss_pred HHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcC
Q 004584 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (744)
Q Consensus 356 L~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~ 435 (744)
|..|+. ....+.+|.+|+.+..+.+.+++ |+. .+.|..++.++....|+..+++... ..++..+..|++.+.
T Consensus 140 LKtLEE--Pp~~v~fILaTtd~~kL~~TIrS--RC~-~f~f~~Ls~eeI~~~L~~Il~kEgi---~id~eAL~~Ia~~A~ 211 (709)
T PRK08691 140 LKTLEE--PPEHVKFILATTDPHKVPVTVLS--RCL-QFVLRNMTAQQVADHLAHVLDSEKI---AYEPPALQLLGRAAA 211 (709)
T ss_pred HHHHHh--CCCCcEEEEEeCCccccchHHHH--HHh-hhhcCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHhC
Confidence 888874 34567888888999999999987 763 6788899999999999887775431 234456888888887
Q ss_pred CCChHHHHHHHHHHHHH
Q 004584 436 NYSGAELEGVAKSAVSF 452 (744)
Q Consensus 436 g~sg~dl~~l~~~A~~~ 452 (744)
| +.+++.++++.++.+
T Consensus 212 G-slRdAlnLLDqaia~ 227 (709)
T PRK08691 212 G-SMRDALSLLDQAIAL 227 (709)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 6 889999998887754
No 165
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=5.3e-12 Score=141.74 Aligned_cols=173 Identities=17% Similarity=0.218 Sum_probs=118.7
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhcCC------------------------CEEEEcccccccccchhhHhhHHHHHHH
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDSDF------------------------PFVKIISAESMIGLHESTKCAQIVKVFE 588 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~~~------------------------~~i~v~~~~~~~g~~~~~~~~~i~~if~ 588 (744)
.+..+||+||+|+|||++|+.+|+...+ .++.++... ......++++.+
T Consensus 37 l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas-------~~gvd~ir~ii~ 109 (546)
T PRK14957 37 VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAAS-------RTGVEETKEILD 109 (546)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeeccc-------ccCHHHHHHHHH
Confidence 3445899999999999999999986543 222222111 112234566665
Q ss_pred HHh----cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEE
Q 004584 589 DAY----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYH 664 (744)
Q Consensus 589 ~a~----~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~ 664 (744)
.+. .+...|+||||+|++. ...++.|+..|+..+. .+.+|.+|+.+..+-+. +++|. ..++
T Consensus 110 ~~~~~p~~g~~kViIIDEa~~ls----------~~a~naLLK~LEepp~---~v~fIL~Ttd~~kil~t-I~SRc-~~~~ 174 (546)
T PRK14957 110 NIQYMPSQGRYKVYLIDEVHMLS----------KQSFNALLKTLEEPPE---YVKFILATTDYHKIPVT-ILSRC-IQLH 174 (546)
T ss_pred HHHhhhhcCCcEEEEEechhhcc----------HHHHHHHHHHHhcCCC---CceEEEEECChhhhhhh-HHHhe-eeEE
Confidence 543 2456899999999974 5677889888887542 44445455555544443 55565 7999
Q ss_pred cCCCCHHHHHHHHHH----ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHH
Q 004584 665 VPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCL 738 (744)
Q Consensus 665 ~p~~~~~~~~~Il~~----~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al 738 (744)
|.+++.+++...+++ .+...+++....+...++|++|.+++.++.+.... + ..|+.+++++++
T Consensus 175 f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~~~----------~-~~It~~~V~~~l 241 (546)
T PRK14957 175 LKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFC----------G-GELKQAQIKQML 241 (546)
T ss_pred eCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----------c-CCCCHHHHHHHH
Confidence 999998888777765 35556677777888888999999999999877652 1 347777776644
No 166
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.43 E-value=2.2e-12 Score=131.50 Aligned_cols=194 Identities=25% Similarity=0.349 Sum_probs=125.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhc
Q 004584 256 GMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAIC 335 (744)
Q Consensus 256 giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~ 335 (744)
.++||||||||||+|||.+++......+.+|..+. .......+|++|+.+++.....++ -.|||||||+.+.
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSA-----t~a~t~dvR~ife~aq~~~~l~kr---kTilFiDEiHRFN 235 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSA-----TNAKTNDVRDIFEQAQNEKSLTKR---KTILFIDEIHRFN 235 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEec-----cccchHHHHHHHHHHHHHHhhhcc---eeEEEeHHhhhhh
Confidence 69999999999999999999987655444443322 224456789999999877544333 3599999999986
Q ss_pred ccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEe--CCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHh
Q 004584 336 KSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMT--NRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTN 413 (744)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~t--n~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~ 413 (744)
+..+ ..||..++ .+.|.+||+| |+.-.+..+|++ |+. ++.+.....+....||..-..
T Consensus 236 ksQQ-------------D~fLP~VE----~G~I~lIGATTENPSFqln~aLlS--RC~-VfvLekL~~n~v~~iL~raia 295 (554)
T KOG2028|consen 236 KSQQ-------------DTFLPHVE----NGDITLIGATTENPSFQLNAALLS--RCR-VFVLEKLPVNAVVTILMRAIA 295 (554)
T ss_pred hhhh-------------hcccceec----cCceEEEecccCCCccchhHHHHh--ccc-eeEeccCCHHHHHHHHHHHHH
Confidence 4322 23555543 4689999988 344457899998 554 566777778888888876433
Q ss_pred cccccC----CC------CCcccHHHHHHhcCCCChHHHHHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHH
Q 004584 414 KMKENS----FL------APDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHAL 483 (744)
Q Consensus 414 ~~~~~~----~~------~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al 483 (744)
.+.... .+ ..+.-++.++..++|-..+.|..|--.+.+ ...|.-. .....++.+|..+.+
T Consensus 296 ~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m-~~tr~g~---------~~~~~lSidDvke~l 365 (554)
T KOG2028|consen 296 SLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSM-FCTRSGQ---------SSRVLLSIDDVKEGL 365 (554)
T ss_pred hhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHH-HHhhcCC---------cccceecHHHHHHHH
Confidence 221111 01 233457888999988666555443333222 3333211 234567888888888
Q ss_pred hhhc
Q 004584 484 YEIV 487 (744)
Q Consensus 484 ~~~~ 487 (744)
..-.
T Consensus 366 q~s~ 369 (554)
T KOG2028|consen 366 QRSH 369 (554)
T ss_pred hhcc
Confidence 7643
No 167
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.43 E-value=7.8e-12 Score=129.82 Aligned_cols=186 Identities=18% Similarity=0.211 Sum_probs=125.5
Q ss_pred eeeeeecCCCCChhHHHHHHHhhcCCCEEEEccccc-----ccccchhhHhhH-HH-------------------HHHHH
Q 004584 535 VTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES-----MIGLHESTKCAQ-IV-------------------KVFED 589 (744)
Q Consensus 535 ~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~-----~~g~~~~~~~~~-i~-------------------~if~~ 589 (744)
.++||+||||||||++|+++|...+.+|+.+++.+. ++|.+.+..... .. ..+-.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 579999999999999999999999999999976543 344332111000 00 11122
Q ss_pred HhcCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCC----C---------CCCcEEEEEeCCCCC-----CCC
Q 004584 590 AYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP----P---------KGKKLLVIGTTSEVS-----FLD 651 (744)
Q Consensus 590 a~~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~----~---------~~~~v~vi~~tn~~~-----~l~ 651 (744)
|.+ ...+|+||||+++. ..+++.|+.+|+.-. . ....+.||+|+|... .+
T Consensus 102 A~~-~g~~lllDEi~r~~----------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l- 169 (262)
T TIGR02640 102 AVR-EGFTLVYDEFTRSK----------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHET- 169 (262)
T ss_pred HHH-cCCEEEEcchhhCC----------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecc-
Confidence 222 23699999999973 557777877776421 1 112567899999753 22
Q ss_pred ccccccccceEEEcCCCCHHHHHHHHHHccCCCHHHHHHHHH---hC---C---CCcHHHHHHHHHHHHhcccCCccccc
Q 004584 652 SVGICDAFSVTYHVPTLKTDDAKKVLKQLNVFAEEDVDSASE---AL---N---DMPIKKLYMLIEMAAQGEQGGAAEAI 722 (744)
Q Consensus 652 ~~~l~~rf~~~i~~p~~~~~~~~~Il~~~~~~~~~~~~~~~~---~~---~---~g~ir~l~~~l~~a~~~a~~~~~~a~ 722 (744)
+..+..|| ..+.++.|+.++..+|+++.....++.+..++. .+ . .-++|.++.+++.++..+
T Consensus 170 ~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~~~~~~-------- 240 (262)
T TIGR02640 170 QDALLDRL-ITIFMDYPDIDTETAILRAKTDVAEDSAATIVRLVREFRASGDEITSGLRASLMIAEVATQQD-------- 240 (262)
T ss_pred cHHHHhhc-EEEECCCCCHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHHHHHcC--------
Confidence 23566787 578999999888889998754445443333221 11 1 445999999999888873
Q ss_pred ccCCCCcchhhHHHHHHHHhc
Q 004584 723 YSGREKIKISHFYDCLQDMVR 743 (744)
Q Consensus 723 ~~g~~~It~e~~~~al~~~~~ 743 (744)
.+..++.++|.+...++.+
T Consensus 241 --~~~~~~~~~~~~~~~~~~~ 259 (262)
T TIGR02640 241 --IPVDVDDEDFVDLCIDILA 259 (262)
T ss_pred --CCCCCCcHHHHHHHHHHhc
Confidence 4577999999999988763
No 168
>PRK06620 hypothetical protein; Validated
Probab=99.43 E-value=2.3e-12 Score=129.08 Aligned_cols=163 Identities=18% Similarity=0.191 Sum_probs=114.4
Q ss_pred eeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhhccCCCCc
Q 004584 535 VTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGP 614 (744)
Q Consensus 535 ~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~~~g~ 614 (744)
.+++||||||||||++++++++..+..++. +... ..+.+ + ...+|+|||||.+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~----~~~~----------~~~~~----~-~~d~lliDdi~~~~------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK----DIFF----------NEEIL----E-KYNAFIIEDIENWQ------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc----hhhh----------chhHH----h-cCCEEEEeccccch-------
Confidence 779999999999999999999887654322 1100 01111 1 23689999999652
Q ss_pred chhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccc--eEEEcCCCCHHHHHHHHHHc----cCCCHHHH
Q 004584 615 RFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFS--VTYHVPTLKTDDAKKVLKQL----NVFAEEDV 688 (744)
Q Consensus 615 ~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~--~~i~~p~~~~~~~~~Il~~~----~~~~~~~~ 688 (744)
. ..|..+++.+.+.+ +.++|+++..|..+.-..+++|+. ..+.+++|+.+++..++++. +...++++
T Consensus 99 ---~---~~lf~l~N~~~e~g-~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev 171 (214)
T PRK06620 99 ---E---PALLHIFNIINEKQ-KYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQI 171 (214)
T ss_pred ---H---HHHHHHHHHHHhcC-CEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 1 23444444443333 467777777766543346788876 57899999999999999863 45678899
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHH
Q 004584 689 DSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCL 738 (744)
Q Consensus 689 ~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al 738 (744)
...+....++++|.++.+++.....+.. ....||.+.+++++
T Consensus 172 ~~~L~~~~~~d~r~l~~~l~~l~~~~~~--------~~~~it~~~~~~~l 213 (214)
T PRK06620 172 IDFLLVNLPREYSKIIEILENINYFALI--------SKRKITISLVKEVL 213 (214)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHH--------cCCCCCHHHHHHHh
Confidence 9999999999999999999986543221 22459999998876
No 169
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=6.6e-12 Score=143.12 Aligned_cols=173 Identities=16% Similarity=0.204 Sum_probs=121.2
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhcCC------------------------CEEEEcccccccccchhhHhhHHHHHHH
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDSDF------------------------PFVKIISAESMIGLHESTKCAQIVKVFE 588 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~~~------------------------~~i~v~~~~~~~g~~~~~~~~~i~~if~ 588 (744)
.+..+||+||+|||||++|+.+|+...+ +++.++.. .......++++.+
T Consensus 37 ~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaa-------s~~~vd~ir~i~~ 109 (559)
T PRK05563 37 ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAA-------SNNGVDEIRDIRD 109 (559)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeecc-------ccCCHHHHHHHHH
Confidence 3455789999999999999999977532 22333221 1123456778877
Q ss_pred HHh----cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEE
Q 004584 589 DAY----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYH 664 (744)
Q Consensus 589 ~a~----~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~ 664 (744)
.+. .+...|++|||+|.|. ....++|+..|+..+. .+++|.+|+.++.+.+ .+++|+ ..+.
T Consensus 110 ~v~~~p~~~~~kViIIDE~~~Lt----------~~a~naLLKtLEepp~---~~ifIlatt~~~ki~~-tI~SRc-~~~~ 174 (559)
T PRK05563 110 KVKYAPSEAKYKVYIIDEVHMLS----------TGAFNALLKTLEEPPA---HVIFILATTEPHKIPA-TILSRC-QRFD 174 (559)
T ss_pred HHhhCcccCCeEEEEEECcccCC----------HHHHHHHHHHhcCCCC---CeEEEEEeCChhhCcH-HHHhHh-eEEe
Confidence 765 3446899999999984 4567788888877543 4555556666776665 455665 4789
Q ss_pred cCCCCHHHHHHHHHH----ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHH
Q 004584 665 VPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCL 738 (744)
Q Consensus 665 ~p~~~~~~~~~Il~~----~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al 738 (744)
|++++.+++...++. .+...+++....+...++|++|.+++.++.+.... ...||.+++.+++
T Consensus 175 f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~~~~-----------~~~It~~~V~~vl 241 (559)
T PRK05563 175 FKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFG-----------DGKVTYEDALEVT 241 (559)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------cCCCCHHHHHHHh
Confidence 999998888877765 34455667777788888999999999999876652 2347777666554
No 170
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=7.4e-12 Score=140.46 Aligned_cols=188 Identities=18% Similarity=0.213 Sum_probs=125.1
Q ss_pred hhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCC-----------------------EEEEcccc
Q 004584 513 KHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFP-----------------------FVKIISAE 569 (744)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~-----------------------~i~v~~~~ 569 (744)
+++.+.+...+.. ...+..+||+||||||||++|+++|+...+. ++.++..
T Consensus 20 ~~v~~~L~~~i~~-----~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~- 93 (504)
T PRK14963 20 EHVKEVLLAALRQ-----GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAA- 93 (504)
T ss_pred HHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEeccc-
Confidence 3445555444432 1233445999999999999999999776421 2222211
Q ss_pred cccccchhhHhhHHHHHHHHHhc----CCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCC
Q 004584 570 SMIGLHESTKCAQIVKVFEDAYK----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTS 645 (744)
Q Consensus 570 ~~~g~~~~~~~~~i~~if~~a~~----~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn 645 (744)
.......++++.+.+.. ..+.|+||||+|.+. ...++.|+..|+..+ ..+++|.+++
T Consensus 94 ------~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls----------~~a~naLLk~LEep~---~~t~~Il~t~ 154 (504)
T PRK14963 94 ------SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS----------KSAFNALLKTLEEPP---EHVIFILATT 154 (504)
T ss_pred ------ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccC----------HHHHHHHHHHHHhCC---CCEEEEEEcC
Confidence 11223456666555432 356799999999863 456777877777643 2455566677
Q ss_pred CCCCCCccccccccceEEEcCCCCHHHHHHHHHH----ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccc
Q 004584 646 EVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEA 721 (744)
Q Consensus 646 ~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~----~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a 721 (744)
.+..+.+ .+.+|+ ..++|++++.+++...+++ .+...+++....+...++|++|.+++.++.+....
T Consensus 155 ~~~kl~~-~I~SRc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~~------- 225 (504)
T PRK14963 155 EPEKMPP-TILSRT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALG------- 225 (504)
T ss_pred ChhhCCh-HHhcce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-------
Confidence 7766655 344554 5899999999998877775 34455677788888899999999999999875431
Q ss_pred cccCCCCcchhhHHHHHH
Q 004584 722 IYSGREKIKISHFYDCLQ 739 (744)
Q Consensus 722 ~~~g~~~It~e~~~~al~ 739 (744)
..||.+++.+++.
T Consensus 226 -----~~It~~~V~~~l~ 238 (504)
T PRK14963 226 -----TPVTRKQVEEALG 238 (504)
T ss_pred -----CCCCHHHHHHHHC
Confidence 2478877776643
No 171
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.42 E-value=2.1e-12 Score=143.00 Aligned_cols=171 Identities=14% Similarity=0.187 Sum_probs=110.7
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhc-----CCCEEEEcccccccccchhh-HhhHHHHHHHHHhcCCCeEEEEeccch
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDS-----DFPFVKIISAESMIGLHEST-KCAQIVKVFEDAYKSPLSIIILDDIER 605 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~-----~~~~i~v~~~~~~~g~~~~~-~~~~i~~if~~a~~~~~~il~iDEid~ 605 (744)
.....++||||||+|||+++++++++. +..++.+.+.+.+ ...... ....+.. |....+ .+.+|+|||++.
T Consensus 134 ~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~-~~~~~~~~~~~~~~-~~~~~~-~~dlLiiDDi~~ 210 (405)
T TIGR00362 134 KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFT-NDFVNALRNNKMEE-FKEKYR-SVDLLLIDDIQF 210 (405)
T ss_pred ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHH-HHHHHHHHcCCHHH-HHHHHH-hCCEEEEehhhh
Confidence 345678999999999999999999764 4667777554322 111000 0011112 222222 257999999999
Q ss_pred hhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCc--cccccccc--eEEEcCCCCHHHHHHHHHHc-
Q 004584 606 LLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDS--VGICDAFS--VTYHVPTLKTDDAKKVLKQL- 680 (744)
Q Consensus 606 l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~--~~l~~rf~--~~i~~p~~~~~~~~~Il~~~- 680 (744)
+.+. ...+..++..++.+...+ +.+||+++..|..++. ..+++||. ..+++++|+.+++..|+++.
T Consensus 211 l~~~--------~~~~~~l~~~~n~~~~~~-~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~ 281 (405)
T TIGR00362 211 LAGK--------ERTQEEFFHTFNALHENG-KQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKA 281 (405)
T ss_pred hcCC--------HHHHHHHHHHHHHHHHCC-CCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 8632 223444555554442223 3456656655655443 25678986 57999999999999999974
Q ss_pred ---cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcc
Q 004584 681 ---NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGE 714 (744)
Q Consensus 681 ---~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a 714 (744)
+...++++...++....+++|.+..++......+
T Consensus 282 ~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 282 EEEGLELPDEVLEFIAKNIRSNVRELEGALNRLLAYA 318 (405)
T ss_pred HHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4556778888888888999999888776655443
No 172
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.42 E-value=1.7e-12 Score=147.32 Aligned_cols=184 Identities=17% Similarity=0.188 Sum_probs=121.3
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhc----------CCCEEEEccccc----------cccc-----chhhH-------h
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDS----------DFPFVKIISAES----------MIGL-----HESTK-------C 580 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~----------~~~~i~v~~~~~----------~~g~-----~~~~~-------~ 580 (744)
.+.++||+||||||||++|+++++.+ +.+|+.+++... ++|. +.+.. .
T Consensus 85 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~ 164 (531)
T TIGR02902 85 NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIP 164 (531)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcc
Confidence 45789999999999999999998642 367898886531 1110 00000 0
Q ss_pred hHHHHHHHHHhcCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCC-------------------------CCC
Q 004584 581 AQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP-------------------------PKG 635 (744)
Q Consensus 581 ~~i~~if~~a~~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~-------------------------~~~ 635 (744)
+.-...+.+ ...++||||||+.|. ...++.|+..|+.-. ...
T Consensus 165 ~~~~G~l~~---a~gG~L~IdEI~~L~----------~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (531)
T TIGR02902 165 QPKPGAVTR---AHGGVLFIDEIGELH----------PVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLP 231 (531)
T ss_pred cccCchhhc---cCCcEEEEechhhCC----------HHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcc
Confidence 000012222 334899999999984 456677776664310 001
Q ss_pred CcEEEE-EeCCCCCCCCccccccccceEEEcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 004584 636 KKLLVI-GTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMA 710 (744)
Q Consensus 636 ~~v~vi-~~tn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~----~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a 710 (744)
.++.+| +||+.++.+++ .+++|+. .+.|++|+.+|+..|+++. +...+++..+.+..++. +.|++.++++.|
T Consensus 232 ~d~rlI~ATt~~p~~L~p-aLrsR~~-~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~-n~Rel~nll~~A 308 (531)
T TIGR02902 232 ADFRLIGATTRNPEEIPP-ALRSRCV-EIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS-NGREAVNIVQLA 308 (531)
T ss_pred cceEEEEEecCCcccCCh-HHhhhhh-eeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh-hHHHHHHHHHHH
Confidence 134444 55567888877 5667764 7899999999999999974 33334444455555554 789999999999
Q ss_pred HhcccCCcccccccCCCCcchhhHHHHHH
Q 004584 711 AQGEQGGAAEAIYSGREKIKISHFYDCLQ 739 (744)
Q Consensus 711 ~~~a~~~~~~a~~~g~~~It~e~~~~al~ 739 (744)
+..+.. +++..|+.+|+..++.
T Consensus 309 a~~A~~-------~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 309 AGIALG-------EGRKRILAEDIEWVAE 330 (531)
T ss_pred HHHHhh-------CCCcEEcHHHHHHHhC
Confidence 877543 3567899999999886
No 173
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=6.6e-12 Score=139.20 Aligned_cols=182 Identities=18% Similarity=0.266 Sum_probs=127.3
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccc------------cccccchhhH
Q 004584 512 HKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAE------------SMIGLHESTK 579 (744)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~------------~~~g~~~~~~ 579 (744)
+++++++...+....+.......+-++|+||||+|||++++.+|+..+-.|+++.-.- .++|.-++
T Consensus 328 LekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPG-- 405 (782)
T COG0466 328 LEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPG-- 405 (782)
T ss_pred chhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCCh--
Confidence 4455666655555544445555567899999999999999999999999999983221 13444444
Q ss_pred hhHHHHHHHHHhcCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhcc------------CCCCCCcEEEEEeCCCC
Q 004584 580 CAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKR------------LPPKGKKLLVIGTTSEV 647 (744)
Q Consensus 580 ~~~i~~if~~a~~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~------------~~~~~~~v~vi~~tn~~ 647 (744)
.+-+-.++|....| +++|||||++...-. | .--++||+.|+- ++-...+|+||+|.|..
T Consensus 406 --rIiQ~mkka~~~NP-v~LLDEIDKm~ss~r-G-----DPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl 476 (782)
T COG0466 406 --KIIQGMKKAGVKNP-VFLLDEIDKMGSSFR-G-----DPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSL 476 (782)
T ss_pred --HHHHHHHHhCCcCC-eEEeechhhccCCCC-C-----ChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCcc
Confidence 56666777765554 889999999964321 1 122345544432 12234579999999999
Q ss_pred CCCCccccccccceEEEcCCCCHHHHHHHHHHcc---------------CCCHHHHHHHHHhCC-CCcHHHHHHH
Q 004584 648 SFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQLN---------------VFAEEDVDSASEALN-DMPIKKLYML 706 (744)
Q Consensus 648 ~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~~---------------~~~~~~~~~~~~~~~-~g~ir~l~~~ 706 (744)
+.+.. .|.+|.. +|+++.|+.+|-.+|.+++- .+.++.+..++..++ ..++|.|-..
T Consensus 477 ~tIP~-PLlDRME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~ 549 (782)
T COG0466 477 DTIPA-PLLDRME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLERE 549 (782)
T ss_pred ccCCh-HHhccee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHH
Confidence 87765 5567766 89999999999999999741 567888888998887 5666665443
No 174
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.41 E-value=2.7e-12 Score=130.68 Aligned_cols=179 Identities=18% Similarity=0.220 Sum_probs=116.6
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhhc
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLE 608 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~ 608 (744)
....+++|+||+|||||++|++++..+ +.+++.+.+.... . ....++.... ...+|+|||+|.+..
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~-~--------~~~~~~~~~~--~~~lLvIDdi~~l~~ 104 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA-Q--------ADPEVLEGLE--QADLVCLDDVEAIAG 104 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH-H--------hHHHHHhhcc--cCCEEEEeChhhhcC
Confidence 456789999999999999999999765 4567766555431 0 1123333332 246999999999852
Q ss_pred cCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCc--ccccccc--ceEEEcCCCCHHHHHHHHHHc----
Q 004584 609 YVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDS--VGICDAF--SVTYHVPTLKTDDAKKVLKQL---- 680 (744)
Q Consensus 609 ~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~--~~l~~rf--~~~i~~p~~~~~~~~~Il~~~---- 680 (744)
. ...++.|..+++.....+ ..+|++++..+..++. ..+.+|+ ...+.+|+++.+++..++++.
T Consensus 105 ~--------~~~~~~L~~~l~~~~~~~-~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~ 175 (226)
T TIGR03420 105 Q--------PEWQEALFHLYNRVREAG-GRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARR 175 (226)
T ss_pred C--------hHHHHHHHHHHHHHHHcC-CeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHc
Confidence 1 122444555554432222 2345544444433321 2455676 478999999999999998863
Q ss_pred cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHH
Q 004584 681 NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCL 738 (744)
Q Consensus 681 ~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al 738 (744)
+...+++..+.+...++|++|++..+++.+...+.. +...||.+.+.+++
T Consensus 176 ~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~~~~~~--------~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 176 GLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLA--------AKRKITIPFVKEVL 225 (226)
T ss_pred CCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH--------hCCCCCHHHHHHHh
Confidence 344455666666667999999999999887654322 23469998888876
No 175
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.41 E-value=3.7e-12 Score=140.99 Aligned_cols=230 Identities=13% Similarity=0.161 Sum_probs=137.0
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEeccc
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGP 289 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~ 289 (744)
+..+|++.-+|.-.+......+++...+-..+ -.+..+++||||||+|||+|++++++.+. +..+.+++..
T Consensus 106 ~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~-------~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 106 PLMTFANFLVTPENDLPHRILQEFTKVSEQGK-------GFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred ccccccceeeCCcHHHHHHHHHHHHhcccccc-------CCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 78899997555544433233243322221010 12235799999999999999999999873 4556677776
Q ss_pred chhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEE
Q 004584 290 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVL 369 (744)
Q Consensus 290 ~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~ 369 (744)
++...+.......-.+.|..... .+.+|+|||++.+..+.. ....+..+++.+ ...+..+
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~~~---------~~dvLiIDDiq~l~~k~~--------~qeelf~l~N~l---~~~~k~I 238 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQFYR---------NVDALFIEDIEVFSGKGA--------TQEEFFHTFNSL---HTEGKLI 238 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHHcc---------cCCEEEEcchhhhcCChh--------hHHHHHHHHHHH---HHCCCcE
Confidence 66554332211111122332222 245999999999853321 122222232221 1123445
Q ss_pred EEEEeCCCC---ccchhhcCCCccc--eEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHH
Q 004584 370 LIGMTNRKD---MLDEALLRPGRLE--VQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEG 444 (744)
Q Consensus 370 vI~~tn~~~---~id~al~r~gRf~--~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~ 444 (744)
|++++..|. .+++++++ ||. ..+.+++|+.++|..||+..+.... ...++..++.++....+ +.++|++
T Consensus 239 Ilts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~---~~l~~evl~~la~~~~~-dir~L~g 312 (445)
T PRK12422 239 VISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALS---IRIEETALDFLIEALSS-NVKSLLH 312 (445)
T ss_pred EEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhcCC-CHHHHHH
Confidence 555544454 46799998 885 7889999999999999998877643 12344557778887764 6777877
Q ss_pred HHHHHHH-HHHHhccccCCCCCCCccccceeehhHHHHHHhhh
Q 004584 445 VAKSAVS-FALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (744)
Q Consensus 445 l~~~A~~-~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~ 486 (744)
.+...+. .|..+. ....++.++...++..+
T Consensus 313 ~l~~l~~~~a~~~~------------~~~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 313 ALTLLAKRVAYKKL------------SHQLLYVDDIKALLHDV 343 (445)
T ss_pred HHHHHHHHHHHHHh------------hCCCCCHHHHHHHHHHh
Confidence 7666542 233221 12347888888887764
No 176
>PRK04195 replication factor C large subunit; Provisional
Probab=99.41 E-value=5.5e-12 Score=142.48 Aligned_cols=195 Identities=22% Similarity=0.266 Sum_probs=130.8
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchh
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL 292 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~ 292 (744)
+-+|++ +.|.+++++++ +.++..... | .+++++|||||||||||++|+++|+++ +..+..+++++..
T Consensus 10 P~~l~d--lvg~~~~~~~l-~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el-~~~~ielnasd~r 76 (482)
T PRK04195 10 PKTLSD--VVGNEKAKEQL-REWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDY-GWEVIELNASDQR 76 (482)
T ss_pred CCCHHH--hcCCHHHHHHH-HHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHc-CCCEEEEcccccc
Confidence 345778 99999999888 777654321 1 236789999999999999999999998 4566777776542
Q ss_pred cccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEE
Q 004584 293 SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIG 372 (744)
Q Consensus 293 ~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~ 372 (744)
+ ...++.+...+....+..+ ..+.+|+|||+|.+..+.+ ...+..|+..++. .+..+|+
T Consensus 77 ~------~~~i~~~i~~~~~~~sl~~--~~~kvIiIDEaD~L~~~~d---------~~~~~aL~~~l~~----~~~~iIl 135 (482)
T PRK04195 77 T------ADVIERVAGEAATSGSLFG--ARRKLILLDEVDGIHGNED---------RGGARAILELIKK----AKQPIIL 135 (482)
T ss_pred c------HHHHHHHHHHhhccCcccC--CCCeEEEEecCcccccccc---------hhHHHHHHHHHHc----CCCCEEE
Confidence 2 2345555555443322211 1356999999999864211 1233455555542 3445677
Q ss_pred EeCCCCccch-hhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHHH
Q 004584 373 MTNRKDMLDE-ALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVS 451 (744)
Q Consensus 373 ~tn~~~~id~-al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~ 451 (744)
++|.+..+++ .+++ | ...|.|+.|+..++..+++..+..... ..++..+..+++.+.| |+..++.....
T Consensus 136 i~n~~~~~~~k~Lrs--r-~~~I~f~~~~~~~i~~~L~~i~~~egi---~i~~eaL~~Ia~~s~G----DlR~ain~Lq~ 205 (482)
T PRK04195 136 TANDPYDPSLRELRN--A-CLMIEFKRLSTRSIVPVLKRICRKEGI---ECDDEALKEIAERSGG----DLRSAINDLQA 205 (482)
T ss_pred eccCccccchhhHhc--c-ceEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCC----CHHHHHHHHHH
Confidence 7888888877 5665 4 347999999999999999988865432 2344567888887654 66666555443
No 177
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.41 E-value=4.7e-12 Score=129.03 Aligned_cols=174 Identities=16% Similarity=0.200 Sum_probs=116.1
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhhc
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLE 608 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~ 608 (744)
....+++|+||+|||||++|+++++.. +.+++.+.+.+.. ..+.. .....+|+|||+|.+.
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~-------------~~~~~--~~~~~~liiDdi~~l~- 103 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL-------------LAFDF--DPEAELYAVDDVERLD- 103 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH-------------HHHhh--cccCCEEEEeChhhcC-
Confidence 445789999999999999999999764 5566666544321 11111 2235789999999873
Q ss_pred cCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCC--CCcccccccc--ceEEEcCCCCHHHHHHHHHH----c
Q 004584 609 YVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSF--LDSVGICDAF--SVTYHVPTLKTDDAKKVLKQ----L 680 (744)
Q Consensus 609 ~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~--l~~~~l~~rf--~~~i~~p~~~~~~~~~Il~~----~ 680 (744)
...+..|...++.....+..+++++++..+.. +. ..+.+|| ...+++|+|+.++...++++ .
T Consensus 104 ---------~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~-~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~ 173 (227)
T PRK08903 104 ---------DAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLR-EDLRTRLGWGLVYELKPLSDADKIAALKAAAAER 173 (227)
T ss_pred ---------chHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCC-HHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHc
Confidence 22344555556544333333444444433322 22 2455677 57999999998777777776 3
Q ss_pred cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHH
Q 004584 681 NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 739 (744)
Q Consensus 681 ~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~ 739 (744)
+.-.++++...+...++|++|++..+++.....+.. ....||...+.+++.
T Consensus 174 ~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~~~~~~--------~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 174 GLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLE--------QKRPVTLPLLREMLA 224 (227)
T ss_pred CCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH--------hCCCCCHHHHHHHHh
Confidence 455566777777778899999999999886554322 335799999999886
No 178
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.41 E-value=6.1e-12 Score=148.04 Aligned_cols=228 Identities=21% Similarity=0.240 Sum_probs=145.6
Q ss_pred CcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchh-------
Q 004584 220 GIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL------- 292 (744)
Q Consensus 220 ~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~------- 292 (744)
..-|+++.+++| .+++..... .+-.....++|+||||||||++++.+|+.++ .++..++.....
T Consensus 323 ~~~g~~~vK~~i-~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~-~~~~~i~~~~~~d~~~i~g 393 (784)
T PRK10787 323 DHYGLERVKDRI-LEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATG-RKYVRMALGGVRDEAEIRG 393 (784)
T ss_pred hccCHHHHHHHH-HHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhC-CCEEEEEcCCCCCHHHhcc
Confidence 488999998888 444432211 1112344699999999999999999999985 455555433321
Q ss_pred --cccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCc--------
Q 004584 293 --SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV-------- 362 (744)
Q Consensus 293 --~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~-------- 362 (744)
..|.|.....+.+.+..+.... .|++|||+|.+.+.... .....|+..+|.-
T Consensus 394 ~~~~~~g~~~G~~~~~l~~~~~~~---------~villDEidk~~~~~~g---------~~~~aLlevld~~~~~~~~d~ 455 (784)
T PRK10787 394 HRRTYIGSMPGKLIQKMAKVGVKN---------PLFLLDEIDKMSSDMRG---------DPASALLEVLDPEQNVAFSDH 455 (784)
T ss_pred chhccCCCCCcHHHHHHHhcCCCC---------CEEEEEChhhcccccCC---------CHHHHHHHHhccccEEEEecc
Confidence 2466666666666665543221 38999999998754221 1234556555531
Q ss_pred -----cCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHh-c-ccccCC-----CCCcccHHHH
Q 004584 363 -----ESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTN-K-MKENSF-----LAPDVNLQEL 430 (744)
Q Consensus 363 -----~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~-~-~~~~~~-----~~~~~~l~~l 430 (744)
...+++++|+|+|.. .|+|+|++ |+. .|.+..++.++..+|.+.++. + +..++. ...+..+..+
T Consensus 456 ~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~i 531 (784)
T PRK10787 456 YLEVDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGI 531 (784)
T ss_pred cccccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHH
Confidence 133689999999987 59999999 996 689999999999999998874 1 111110 1122234555
Q ss_pred HHh-cCCCChHHHHHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHHh
Q 004584 431 AAR-TKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALY 484 (744)
Q Consensus 431 a~~-t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~ 484 (744)
++. +..+-.+.|+++++..+..++.+.+.... .....++.+++...+.
T Consensus 532 i~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~------~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 532 IRYYTREAGVRSLEREISKLCRKAVKQLLLDKS------LKHIEINGDNLHDYLG 580 (784)
T ss_pred HHhCCcccCCcHHHHHHHHHHHHHHHHHHhcCC------CceeeecHHHHHHHhC
Confidence 542 33444577888777777666665432111 2346788888877665
No 179
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=6.9e-12 Score=147.45 Aligned_cols=172 Identities=19% Similarity=0.194 Sum_probs=118.9
Q ss_pred eeeeeecCCCCChhHHHHHHHhhcCCC--------------------------EEEEcccccccccchhhHhhHHHHHHH
Q 004584 535 VTCLLEGPSGSGKTALAATAGIDSDFP--------------------------FVKIISAESMIGLHESTKCAQIVKVFE 588 (744)
Q Consensus 535 ~~~Ll~GppG~GKT~la~~~a~~~~~~--------------------------~i~v~~~~~~~g~~~~~~~~~i~~if~ 588 (744)
..+||+||+|||||++|+++|+.+.+. ++.++... ......++++.+
T Consensus 38 Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas-------~~~Vd~iR~l~~ 110 (824)
T PRK07764 38 HAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAAS-------HGGVDDARELRE 110 (824)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccc-------cCCHHHHHHHHH
Confidence 447999999999999999999876531 22221111 112345555544
Q ss_pred HH----hcCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEE
Q 004584 589 DA----YKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYH 664 (744)
Q Consensus 589 ~a----~~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~ 664 (744)
.+ ..+...|+||||+|+|. ...++.|+..|+..+. .++||.+|+.++.+-+ .+++| +.+++
T Consensus 111 ~~~~~p~~~~~KV~IIDEad~lt----------~~a~NaLLK~LEEpP~---~~~fIl~tt~~~kLl~-TIrSR-c~~v~ 175 (824)
T PRK07764 111 RAFFAPAESRYKIFIIDEAHMVT----------PQGFNALLKIVEEPPE---HLKFIFATTEPDKVIG-TIRSR-THHYP 175 (824)
T ss_pred HHHhchhcCCceEEEEechhhcC----------HHHHHHHHHHHhCCCC---CeEEEEEeCChhhhhH-HHHhh-eeEEE
Confidence 33 34567899999999984 5678889999888653 5555656666665444 34555 46899
Q ss_pred cCCCCHHHHHHHHHHc----cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHH
Q 004584 665 VPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCL 738 (744)
Q Consensus 665 ~p~~~~~~~~~Il~~~----~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al 738 (744)
|.+++.+++.+.|++. +...+.+...++...++|++|.+++.++...... +...||.+++...+
T Consensus 176 F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia~~----------~~~~IT~e~V~all 243 (824)
T PRK07764 176 FRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAGA----------GPEGVTYERAVALL 243 (824)
T ss_pred eeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhc----------CCCCCCHHHHHHHh
Confidence 9999988888777763 4555667777888888999999999998766432 23447777665543
No 180
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=7.5e-12 Score=142.31 Aligned_cols=199 Identities=17% Similarity=0.233 Sum_probs=136.0
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE-------
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI------- 285 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~------- 285 (744)
.-+|++ |.|.+..++.| +.++... +.+..+||+||+|||||++|+.+|+.+++.....
T Consensus 12 P~~f~d--viGQe~vv~~L-~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 12 PRSFSE--MVGQEHVVQAL-TNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 357888 88899888877 6665433 2234689999999999999999999997531100
Q ss_pred -----eccc--------chhc--ccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHH
Q 004584 286 -----VNGP--------EVLS--KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDS 350 (744)
Q Consensus 286 -----v~~~--------~l~~--~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~ 350 (744)
-+|. +++. .........+|++.+.+.. .|..+ ...|++|||+|.|. ..
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~-~p~~g---~~KV~IIDEvh~Ls-------------~~ 139 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVY-KPVQG---RFKVFMIDEVHMLT-------------NT 139 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHh-CcccC---CceEEEEEChhhCC-------------HH
Confidence 0011 1111 0011223457777766543 23222 24599999999984 23
Q ss_pred HHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHH
Q 004584 351 IVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQEL 430 (744)
Q Consensus 351 ~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~l 430 (744)
..+.||..++. ....+.+|.+|+.+..+.+.+++ |+ ..++|..++.++..+.|+..+++... ..++..+..+
T Consensus 140 a~NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi---~ie~~AL~~L 211 (618)
T PRK14951 140 AFNAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENV---PAEPQALRLL 211 (618)
T ss_pred HHHHHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHH
Confidence 46778888874 44577888888888899988988 65 47899999999998888877654331 2344567888
Q ss_pred HHhcCCCChHHHHHHHHHHHHH
Q 004584 431 AARTKNYSGAELEGVAKSAVSF 452 (744)
Q Consensus 431 a~~t~g~sg~dl~~l~~~A~~~ 452 (744)
++.+.| +.+++.+++..+..+
T Consensus 212 a~~s~G-slR~al~lLdq~ia~ 232 (618)
T PRK14951 212 ARAARG-SMRDALSLTDQAIAF 232 (618)
T ss_pred HHHcCC-CHHHHHHHHHHHHHh
Confidence 888887 888888888766654
No 181
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=6.2e-12 Score=142.33 Aligned_cols=173 Identities=14% Similarity=0.184 Sum_probs=119.9
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhcCCC------------------------EEEEcccccccccchhhHhhHHHHHHHH
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDSDFP------------------------FVKIISAESMIGLHESTKCAQIVKVFED 589 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~~~~------------------------~i~v~~~~~~~g~~~~~~~~~i~~if~~ 589 (744)
+..+||+||||+|||++|+++|+..++. ++.++. ....+...++++.+.
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~-------~~~~~vd~ir~l~~~ 110 (527)
T PRK14969 38 HHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDA-------ASNTQVDAMRELLDN 110 (527)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeec-------cccCCHHHHHHHHHH
Confidence 3456999999999999999999876542 111111 112234567888777
Q ss_pred Hhc----CCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEc
Q 004584 590 AYK----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHV 665 (744)
Q Consensus 590 a~~----~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~ 665 (744)
+.. +...|+||||+|.|. ...+++|+..|+..+. .+.+|.+|+.++.+.+ .+++| +..++|
T Consensus 111 ~~~~p~~~~~kVvIIDEad~ls----------~~a~naLLK~LEepp~---~~~fIL~t~d~~kil~-tI~SR-c~~~~f 175 (527)
T PRK14969 111 AQYAPTRGRFKVYIIDEVHMLS----------KSAFNAMLKTLEEPPE---HVKFILATTDPQKIPV-TVLSR-CLQFNL 175 (527)
T ss_pred HhhCcccCCceEEEEcCcccCC----------HHHHHHHHHHHhCCCC---CEEEEEEeCChhhCch-hHHHH-HHHHhc
Confidence 643 345799999999974 4567788888887542 4555556666665554 25556 478999
Q ss_pred CCCCHHHHHHHHHH----ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHH
Q 004584 666 PTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 739 (744)
Q Consensus 666 p~~~~~~~~~Il~~----~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~ 739 (744)
++++.+++...+.+ .+...+++....+...++|++|.++++++.+.... ...|+.+++.+.+.
T Consensus 176 ~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai~~~-----------~~~I~~~~v~~~~~ 242 (527)
T PRK14969 176 KQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYG-----------GGTVNESEVRAMLG 242 (527)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------CCCcCHHHHHHHHC
Confidence 99998888766654 34445666677788889999999999999876652 34477777666543
No 182
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.41 E-value=1.1e-11 Score=134.34 Aligned_cols=179 Identities=21% Similarity=0.223 Sum_probs=114.4
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhcC-----CCEEEEccccccccc-------------c------hhhHhhHHHHHHHH
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDSD-----FPFVKIISAESMIGL-------------H------ESTKCAQIVKVFED 589 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~~-----~~~i~v~~~~~~~g~-------------~------~~~~~~~i~~if~~ 589 (744)
.+++||+||||||||++|++++++.. .+++.+++.+..-.. . .......++++.+.
T Consensus 36 ~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (337)
T PRK12402 36 LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKE 115 (337)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHH
Confidence 34799999999999999999998753 345666554321000 0 00012233444333
Q ss_pred Hhc-----CCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEE
Q 004584 590 AYK-----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYH 664 (744)
Q Consensus 590 a~~-----~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~ 664 (744)
... ..+.+|||||+|.+. ...++.|...++..+. ...+|+ +++.+..+.+ .+++|+ ..+.
T Consensus 116 ~~~~~~~~~~~~vlilDe~~~l~----------~~~~~~L~~~le~~~~--~~~~Il-~~~~~~~~~~-~L~sr~-~~v~ 180 (337)
T PRK12402 116 YASYRPLSADYKTILLDNAEALR----------EDAQQALRRIMEQYSR--TCRFII-ATRQPSKLIP-PIRSRC-LPLF 180 (337)
T ss_pred HHhcCCCCCCCcEEEEeCcccCC----------HHHHHHHHHHHHhccC--CCeEEE-EeCChhhCch-hhcCCc-eEEE
Confidence 221 345799999999874 3445667777776532 233444 4444443333 455665 5789
Q ss_pred cCCCCHHHHHHHHHHc----cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHH
Q 004584 665 VPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 739 (744)
Q Consensus 665 ~p~~~~~~~~~Il~~~----~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~ 739 (744)
|++++.+++..++++. +...+++..+.+...++|++|++++.++.++.. ...||.+++.+++.
T Consensus 181 ~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~~~------------~~~It~~~v~~~~~ 247 (337)
T PRK12402 181 FRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAALA------------AGEITMEAAYEALG 247 (337)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc------------CCCCCHHHHHHHhC
Confidence 9999999988888863 334455666666667799999999999876632 23588888887765
No 183
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.41 E-value=8.2e-12 Score=136.41 Aligned_cols=246 Identities=20% Similarity=0.255 Sum_probs=147.1
Q ss_pred cCchHHHHHHHHHHHHhcc---CCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhc-ccc
Q 004584 221 IGGLSAEFADIFRRAFASR---VFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS-KFV 296 (744)
Q Consensus 221 igGl~~~~~~i~~~~~~~~---~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~-~~~ 296 (744)
|.|+++.++.+ ..++... +.+......-...+..++||+||||||||++|+++|+.+ ..++..+++..+.. .|+
T Consensus 73 ViGq~~ak~~l-~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l-~~pf~~id~~~l~~~gyv 150 (412)
T PRK05342 73 VIGQERAKKVL-SVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL-DVPFAIADATTLTEAGYV 150 (412)
T ss_pred eeChHHHHHHH-HHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh-CCCceecchhhcccCCcc
Confidence 89999998887 4444221 111000000001245789999999999999999999998 46777888887754 688
Q ss_pred cchHHH-HHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCcc-HHHHHHHHHHhccCcc-----------
Q 004584 297 GETEKN-IRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGV-HDSIVNQLLTKIDGVE----------- 363 (744)
Q Consensus 297 g~~~~~-i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~-~~~~~~~LL~~~d~~~----------- 363 (744)
|+.... +..++..+..... ...++||||||||.+.++++.......+ ...+.+.||..||+-.
T Consensus 151 G~d~e~~l~~l~~~~~~~~~----~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~ 226 (412)
T PRK05342 151 GEDVENILLKLLQAADYDVE----KAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 226 (412)
T ss_pred cchHHHHHHHHHHhccccHH----HcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCc
Confidence 875444 4454443211000 0125699999999998774332111111 2346777888887531
Q ss_pred CCCcEEEEEEeCCCC----------------------------------------------------ccchhhcCCCccc
Q 004584 364 SLNNVLLIGMTNRKD----------------------------------------------------MLDEALLRPGRLE 391 (744)
Q Consensus 364 ~~~~v~vI~~tn~~~----------------------------------------------------~id~al~r~gRf~ 391 (744)
...+.++|.|+|-.. .+.|+|+. |++
T Consensus 227 ~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld 304 (412)
T PRK05342 227 PQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLP 304 (412)
T ss_pred CCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCC
Confidence 111344455544400 02455544 999
Q ss_pred eEEEEcCCCHHHHHHHHHH----HHhcccc---cCCC---CCcccHHHHHHh--cCCCChHHHHHHHHHHHHHHHHhccc
Q 004584 392 VQVEISLPDENGRLQILQI----HTNKMKE---NSFL---APDVNLQELAAR--TKNYSGAELEGVAKSAVSFALNRQLS 459 (744)
Q Consensus 392 ~~i~i~~Pd~~~r~~Il~~----~~~~~~~---~~~~---~~~~~l~~la~~--t~g~sg~dl~~l~~~A~~~a~~r~~~ 459 (744)
..+.|.+.+.++..+|+.. .++.+.. ...+ .++..++.+++. ..++-.+.|+++++......+.+...
T Consensus 305 ~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p~ 384 (412)
T PRK05342 305 VVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELPS 384 (412)
T ss_pred eeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhccc
Confidence 9999999999999999973 3322210 0001 133446777775 44566788999998888777765432
Q ss_pred cCCCCCCCccccceeehhHHH
Q 004584 460 MDDLTKPVDEESIKVTMDDFL 480 (744)
Q Consensus 460 ~~~~~~~~~~~~~~it~~df~ 480 (744)
.. ......|+.+.+.
T Consensus 385 ~~------~~~~v~I~~~~v~ 399 (412)
T PRK05342 385 RE------DVEKVVITKEVVE 399 (412)
T ss_pred cC------CCceEEECHHHhc
Confidence 11 1233556666653
No 184
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.40 E-value=1.4e-11 Score=133.31 Aligned_cols=193 Identities=18% Similarity=0.213 Sum_probs=121.3
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCC----CcEEecc
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGM----EPKIVNG 288 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~----~~~~v~~ 288 (744)
+-+|++ +.|.+..++++ .+++... ...+++|+||||||||++|+++++++.+. .+..+++
T Consensus 11 P~~~~~--~~g~~~~~~~L-~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 11 PALLED--ILGQDEVVERL-SRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred CCcHHH--hcCCHHHHHHH-HHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 345777 78999988887 6655432 12369999999999999999999998543 3456677
Q ss_pred cchhccc-------------ccc-------hHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccH
Q 004584 289 PEVLSKF-------------VGE-------TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVH 348 (744)
Q Consensus 289 ~~l~~~~-------------~g~-------~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~ 348 (744)
.++.... .+. ....++++.+......|.. ..+.+|+|||+|.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~vlilDe~~~l~~------------ 139 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLS---ADYKTILLDNAEALRE------------ 139 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCC---CCCcEEEEeCcccCCH------------
Confidence 6654221 111 1223344443443333221 2245999999998742
Q ss_pred HHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHH
Q 004584 349 DSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQ 428 (744)
Q Consensus 349 ~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~ 428 (744)
...+.|+..++... ....+|.+++.+..+.+.+++ |+ ..+++.+|+.++..++++..+++... -.++..++
T Consensus 140 -~~~~~L~~~le~~~--~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~---~~~~~al~ 210 (337)
T PRK12402 140 -DAQQALRRIMEQYS--RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGV---DYDDDGLE 210 (337)
T ss_pred -HHHHHHHHHHHhcc--CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHH
Confidence 12334445554332 234566667677777788887 65 36899999999999999987765432 13455678
Q ss_pred HHHHhcCCCChHHHHHHH
Q 004584 429 ELAARTKNYSGAELEGVA 446 (744)
Q Consensus 429 ~la~~t~g~sg~dl~~l~ 446 (744)
.++..+.| +.+++...+
T Consensus 211 ~l~~~~~g-dlr~l~~~l 227 (337)
T PRK12402 211 LIAYYAGG-DLRKAILTL 227 (337)
T ss_pred HHHHHcCC-CHHHHHHHH
Confidence 88887743 444443333
No 185
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.40 E-value=7e-12 Score=138.94 Aligned_cols=206 Identities=22% Similarity=0.298 Sum_probs=134.6
Q ss_pred ccccccCcCchHHHHHH--HHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccch
Q 004584 214 FNLQSLGIGGLSAEFAD--IFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (744)
Q Consensus 214 ~~~~~~~igGl~~~~~~--i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l 291 (744)
-+|++ +.|.++.+.. .+++++... ...+++|+||||||||++|+++++.++ ..+..+++..
T Consensus 9 ~~l~d--~vGq~~~v~~~~~L~~~i~~~-------------~~~~ilL~GppGtGKTtLA~~ia~~~~-~~~~~l~a~~- 71 (413)
T PRK13342 9 KTLDE--VVGQEHLLGPGKPLRRMIEAG-------------RLSSMILWGPPGTGKTTLARIIAGATD-APFEALSAVT- 71 (413)
T ss_pred CCHHH--hcCcHHHhCcchHHHHHHHcC-------------CCceEEEECCCCCCHHHHHHHHHHHhC-CCEEEEeccc-
Confidence 35777 8888887655 225555322 234799999999999999999999984 4555555432
Q ss_pred hcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEE
Q 004584 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLI 371 (744)
Q Consensus 292 ~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI 371 (744)
.....++++++.+..... .+...+|||||+|.+.. ...+.|+..++. +.+++|
T Consensus 72 ------~~~~~ir~ii~~~~~~~~----~g~~~vL~IDEi~~l~~-------------~~q~~LL~~le~----~~iilI 124 (413)
T PRK13342 72 ------SGVKDLREVIEEARQRRS----AGRRTILFIDEIHRFNK-------------AQQDALLPHVED----GTITLI 124 (413)
T ss_pred ------ccHHHHHHHHHHHHHhhh----cCCceEEEEechhhhCH-------------HHHHHHHHHhhc----CcEEEE
Confidence 223456777776654221 11246999999998742 223455665552 467777
Q ss_pred EEeC--CCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHH
Q 004584 372 GMTN--RKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSA 449 (744)
Q Consensus 372 ~~tn--~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A 449 (744)
++|+ ....+++++++ |+ ..+.|++++.++...+++..+..........++..+..+++.+.| ..+.+.++++.+
T Consensus 125 ~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~ 200 (413)
T PRK13342 125 GATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELA 200 (413)
T ss_pred EeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 7763 34578999999 87 578999999999999999876553211101234456778888754 666666677665
Q ss_pred HHHHHHhccccCCCCCCCccccceeehhHHHHHHhh
Q 004584 450 VSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYE 485 (744)
Q Consensus 450 ~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~ 485 (744)
... ...++.+++..++..
T Consensus 201 ~~~------------------~~~It~~~v~~~~~~ 218 (413)
T PRK13342 201 ALG------------------VDSITLELLEEALQK 218 (413)
T ss_pred HHc------------------cCCCCHHHHHHHHhh
Confidence 532 113667777666654
No 186
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.40 E-value=4.3e-12 Score=140.91 Aligned_cols=223 Identities=15% Similarity=0.301 Sum_probs=136.5
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhc----CCCcEEec
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN----GMEPKIVN 287 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~----~~~~~~v~ 287 (744)
+.++|++.-+|.-.........++... | | ...+++||||||+|||+|++++++.+. +..+.+++
T Consensus 100 ~~~tFdnFv~g~~n~~a~~~~~~~~~~----~------~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 100 PDYTFENFVVGPGNSFAYHAALEVAKN----P------G--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CCCcccccccCCchHHHHHHHHHHHhC----c------C--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 688999974443333222221322221 1 1 134699999999999999999999873 23466778
Q ss_pred ccchhcccccchHH-HHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCC
Q 004584 288 GPEVLSKFVGETEK-NIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLN 366 (744)
Q Consensus 288 ~~~l~~~~~g~~~~-~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~ 366 (744)
+.+++..+...... .+.+ |...... .+.+|+|||++.+..+.. ....++ ..++.+...+
T Consensus 168 ~~~f~~~~~~~~~~~~~~~-f~~~~~~--------~~dvLlIDDi~~l~~~~~-------~q~elf----~~~n~l~~~~ 227 (440)
T PRK14088 168 SEKFLNDLVDSMKEGKLNE-FREKYRK--------KVDVLLIDDVQFLIGKTG-------VQTELF----HTFNELHDSG 227 (440)
T ss_pred HHHHHHHHHHHHhcccHHH-HHHHHHh--------cCCEEEEechhhhcCcHH-------HHHHHH----HHHHHHHHcC
Confidence 88776655332211 1222 2222111 146999999998863321 112222 2222222334
Q ss_pred cEEEEEEeCCCCc---cchhhcCCCcc--ceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHH
Q 004584 367 NVLLIGMTNRKDM---LDEALLRPGRL--EVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAE 441 (744)
Q Consensus 367 ~v~vI~~tn~~~~---id~al~r~gRf--~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~d 441 (744)
..+||++.+.|.. +++.+++ || ...+.|.+||.+.|..|++..+..... ..++..++.|++...+ +.++
T Consensus 228 k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~---~l~~ev~~~Ia~~~~~-~~R~ 301 (440)
T PRK14088 228 KQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHG---ELPEEVLNFVAENVDD-NLRR 301 (440)
T ss_pred CeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHhcccc-CHHH
Confidence 4566655566655 4677887 65 457899999999999999988764321 2344558888888876 8889
Q ss_pred HHHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHHhhh
Q 004584 442 LEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (744)
Q Consensus 442 l~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~ 486 (744)
|+.++.....++... ...+|.+...++++.+
T Consensus 302 L~g~l~~l~~~~~~~--------------~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 302 LRGAIIKLLVYKETT--------------GEEVDLKEAILLLKDF 332 (440)
T ss_pred HHHHHHHHHHHHHHh--------------CCCCCHHHHHHHHHHH
Confidence 988888766555432 1246777777777654
No 187
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.40 E-value=1.1e-11 Score=126.41 Aligned_cols=193 Identities=15% Similarity=0.118 Sum_probs=117.5
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcC--CCcEEeccc
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG--MEPKIVNGP 289 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~--~~~~~v~~~ 289 (744)
++.+|++.-.|+-...+..+ +++... +...+++||||||||||++++++++.+.. ..+.+++..
T Consensus 17 ~~~~fd~f~~~~n~~a~~~l-~~~~~~-------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 17 DDETFASFYPGDNDSLLAAL-QNALRQ-------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CcCCccccccCccHHHHHHH-HHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 56788886456445555444 554321 12247999999999999999999988742 223344443
Q ss_pred chhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEE
Q 004584 290 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVL 369 (744)
Q Consensus 290 ~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~ 369 (744)
+... ...++.+.... ..+|+|||++.+..+. .....+...+...++ .++..
T Consensus 83 ~~~~--------~~~~~~~~~~~----------~dlliiDdi~~~~~~~-------~~~~~lf~l~n~~~e----~g~~~ 133 (235)
T PRK08084 83 KRAW--------FVPEVLEGMEQ----------LSLVCIDNIECIAGDE-------LWEMAIFDLYNRILE----SGRTR 133 (235)
T ss_pred HHhh--------hhHHHHHHhhh----------CCEEEEeChhhhcCCH-------HHHHHHHHHHHHHHH----cCCCe
Confidence 3211 11122222211 1399999999885321 112222222222222 23433
Q ss_pred EEEEe-CCCCc---cchhhcCCCccc--eEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHH
Q 004584 370 LIGMT-NRKDM---LDEALLRPGRLE--VQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELE 443 (744)
Q Consensus 370 vI~~t-n~~~~---id~al~r~gRf~--~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~ 443 (744)
+|.++ +.|.. +.|.|++ |+. ..+++.+|+.+++.++++.+..... ...++..++.|++...+ +.+.+.
T Consensus 134 li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~---~~l~~~v~~~L~~~~~~-d~r~l~ 207 (235)
T PRK08084 134 LLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRG---FELPEDVGRFLLKRLDR-EMRTLF 207 (235)
T ss_pred EEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhhcC-CHHHHH
Confidence 44444 45544 5799998 775 6899999999999999987665432 12355568889999886 888888
Q ss_pred HHHHHHHHHH
Q 004584 444 GVAKSAVSFA 453 (744)
Q Consensus 444 ~l~~~A~~~a 453 (744)
.+++.....+
T Consensus 208 ~~l~~l~~~~ 217 (235)
T PRK08084 208 MTLDQLDRAS 217 (235)
T ss_pred HHHHHHHHHH
Confidence 8888754333
No 188
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=9.8e-12 Score=141.74 Aligned_cols=199 Identities=20% Similarity=0.259 Sum_probs=138.4
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE-e-----
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI-V----- 286 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~-v----- 286 (744)
+-+|++ +.|.++.++.+ +.++... +.++.+||+||+|||||++|+.+|+.+++..... .
T Consensus 12 P~~f~~--viGq~~v~~~L-~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C 76 (559)
T PRK05563 12 PQTFED--VVGQEHITKTL-KNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC 76 (559)
T ss_pred CCcHHh--ccCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 457888 99999988877 6665432 2345689999999999999999999986532100 0
Q ss_pred -cc--------cchhc--ccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHH
Q 004584 287 -NG--------PEVLS--KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (744)
Q Consensus 287 -~~--------~~l~~--~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~L 355 (744)
+| .+++. ...+.....++++.+.+... |.. +...|+||||+|.|. ....+.|
T Consensus 77 ~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~-p~~---~~~kViIIDE~~~Lt-------------~~a~naL 139 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYA-PSE---AKYKVYIIDEVHMLS-------------TGAFNAL 139 (559)
T ss_pred HHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhC-ccc---CCeEEEEEECcccCC-------------HHHHHHH
Confidence 01 11110 11123455678887776532 322 235699999999873 2356778
Q ss_pred HHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcC
Q 004584 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (744)
Q Consensus 356 L~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~ 435 (744)
|..++. +...+++|.+|+.++.+.+.+++ |+. .++|..|+.++..++++..+++... ..++..+..++..+.
T Consensus 140 LKtLEe--pp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi---~i~~~al~~ia~~s~ 211 (559)
T PRK05563 140 LKTLEE--PPAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGI---EYEDEALRLIARAAE 211 (559)
T ss_pred HHHhcC--CCCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcC
Confidence 888874 34577888888889999999998 765 6889999999999999887765431 123455778888887
Q ss_pred CCChHHHHHHHHHHHHH
Q 004584 436 NYSGAELEGVAKSAVSF 452 (744)
Q Consensus 436 g~sg~dl~~l~~~A~~~ 452 (744)
| +.+++.++++.+..+
T Consensus 212 G-~~R~al~~Ldq~~~~ 227 (559)
T PRK05563 212 G-GMRDALSILDQAISF 227 (559)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 6 788888888776654
No 189
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=7.7e-12 Score=140.40 Aligned_cols=198 Identities=19% Similarity=0.218 Sum_probs=134.3
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEe----cc
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIV----NG 288 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v----~~ 288 (744)
+-+|++ |.|.+..++.+ ..++... +.++.+||+||||+|||++|+++|+.+.|...... .|
T Consensus 12 P~~F~d--IIGQe~iv~~L-~~aI~~~------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 12 PHNFKQ--IIGQELIKKIL-VNAILNN------------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 446888 89999988877 6655322 23457999999999999999999999965321110 11
Q ss_pred -----------cchhc--ccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHH
Q 004584 289 -----------PEVLS--KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (744)
Q Consensus 289 -----------~~l~~--~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~L 355 (744)
+++.. ....-.-..+|++.+.+... |..+ ...|++|||+|.+. ....+.|
T Consensus 77 ~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~-P~~~---~~KVIIIDEad~Lt-------------~~A~NaL 139 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYL-PTTF---KYKVYIIDEAHMLS-------------TSAWNAL 139 (605)
T ss_pred HHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhc-hhhC---CcEEEEEechHhCC-------------HHHHHHH
Confidence 11110 00012234577777666543 2222 23599999999873 2245678
Q ss_pred HHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcC
Q 004584 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (744)
Q Consensus 356 L~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~ 435 (744)
|..|+. +...+++|.+|+.+..+.+.+++ |+. .++|+.|+.++....++..+.+... -.++..+..++..+.
T Consensus 140 LKtLEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi---~Is~eal~~La~lS~ 211 (605)
T PRK05896 140 LKTLEE--PPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKI---KIEDNAIDKIADLAD 211 (605)
T ss_pred HHHHHh--CCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcC
Confidence 888773 44578888888899999999998 765 6899999999999888877654321 123445778888887
Q ss_pred CCChHHHHHHHHHHHH
Q 004584 436 NYSGAELEGVAKSAVS 451 (744)
Q Consensus 436 g~sg~dl~~l~~~A~~ 451 (744)
| +.+++.++++....
T Consensus 212 G-dlR~AlnlLekL~~ 226 (605)
T PRK05896 212 G-SLRDGLSILDQLST 226 (605)
T ss_pred C-cHHHHHHHHHHHHh
Confidence 6 67777777776543
No 190
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.39 E-value=6.6e-12 Score=126.48 Aligned_cols=204 Identities=20% Similarity=0.312 Sum_probs=121.5
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhc----CCCcEEec
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN----GMEPKIVN 287 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~----~~~~~~v~ 287 (744)
|.++|+..-+|.-.+..-...+.....+ + .....++||||+|+|||+|.+++++++. +..+.+++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~----------~-~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENP----------G-ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHST----------T-TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcC----------C-CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 6788998755654554444423333221 1 1234589999999999999999998873 34566778
Q ss_pred ccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCc
Q 004584 288 GPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNN 367 (744)
Q Consensus 288 ~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~ 367 (744)
+.++...+.......-..-|...... ..+|+||+++.+..+ ......|...++.+...++
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~~~~---------~DlL~iDDi~~l~~~-----------~~~q~~lf~l~n~~~~~~k 131 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDRLRS---------ADLLIIDDIQFLAGK-----------QRTQEELFHLFNRLIESGK 131 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHCT---------SSEEEEETGGGGTTH-----------HHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcccchhhhhhhhc---------CCEEEEecchhhcCc-----------hHHHHHHHHHHHHHHhhCC
Confidence 87777665432222111122222222 349999999998532 1223334444444444456
Q ss_pred EEEEEEeCCCCc---cchhhcCCCccce--EEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHH
Q 004584 368 VLLIGMTNRKDM---LDEALLRPGRLEV--QVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAEL 442 (744)
Q Consensus 368 v~vI~~tn~~~~---id~al~r~gRf~~--~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl 442 (744)
.+|+.+...|.. +++.|.+ ||.. .+++..|+.+.|.+|++..+...... .++..++.|++...+ +.++|
T Consensus 132 ~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~---l~~~v~~~l~~~~~~-~~r~L 205 (219)
T PF00308_consen 132 QLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIE---LPEEVIEYLARRFRR-DVREL 205 (219)
T ss_dssp EEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT-----S-HHHHHHHHHHTTS-SHHHH
T ss_pred eEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC---CcHHHHHHHHHhhcC-CHHHH
Confidence 666666666655 4788888 6654 78999999999999999887765432 344457778888764 88888
Q ss_pred HHHHHHHHHH
Q 004584 443 EGVAKSAVSF 452 (744)
Q Consensus 443 ~~l~~~A~~~ 452 (744)
+.++..-..+
T Consensus 206 ~~~l~~l~~~ 215 (219)
T PF00308_consen 206 EGALNRLDAY 215 (219)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887765543
No 191
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.39 E-value=6.5e-12 Score=141.01 Aligned_cols=225 Identities=18% Similarity=0.272 Sum_probs=140.1
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhc----CCCcEEec
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN----GMEPKIVN 287 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~----~~~~~~v~ 287 (744)
+.++|++.-+|.-..........+.+.+ + .....++|||++|||||+|++++++.+. +..+.+++
T Consensus 283 ~~~TFDnFvvG~sN~~A~aaa~avae~~----------~-~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 283 PKYTFDTFVIGASNRFAHAAAVAVAEAP----------A-KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred CCCCHhhhcCCCccHHHHHHHHHHHhCc----------c-ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 6788999755665542322223332211 1 1223599999999999999999999873 34567888
Q ss_pred ccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCc
Q 004584 288 GPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNN 367 (744)
Q Consensus 288 ~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~ 367 (744)
+.+++..+.........+.|...... +.+|+||||+.+..+.. ....+..+++.+ ...+.
T Consensus 352 aeef~~el~~al~~~~~~~f~~~y~~---------~DLLlIDDIq~l~gke~--------tqeeLF~l~N~l---~e~gk 411 (617)
T PRK14086 352 SEEFTNEFINSIRDGKGDSFRRRYRE---------MDILLVDDIQFLEDKES--------TQEEFFHTFNTL---HNANK 411 (617)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHhhc---------CCEEEEehhccccCCHH--------HHHHHHHHHHHH---HhcCC
Confidence 88888776544333222334332221 46999999999864321 122222333332 22233
Q ss_pred EEEEEEeCC-C---CccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHH
Q 004584 368 VLLIGMTNR-K---DMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELE 443 (744)
Q Consensus 368 v~vI~~tn~-~---~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~ 443 (744)
-+|| ++|. | ..+++.|+++......+.|..||.+.|.+||+.++..... ..++..++.|+....+ +.++|+
T Consensus 412 ~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l---~l~~eVi~yLa~r~~r-nvR~Le 486 (617)
T PRK14086 412 QIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQL---NAPPEVLEFIASRISR-NIRELE 486 (617)
T ss_pred CEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHhccC-CHHHHH
Confidence 3444 5555 3 3468999983333566799999999999999988765431 2345558888888765 788998
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHHhhh
Q 004584 444 GVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (744)
Q Consensus 444 ~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~ 486 (744)
.++.....++.... ..++.+.....++.+
T Consensus 487 gaL~rL~a~a~~~~--------------~~itl~la~~vL~~~ 515 (617)
T PRK14086 487 GALIRVTAFASLNR--------------QPVDLGLTEIVLRDL 515 (617)
T ss_pred HHHHHHHHHHHhhC--------------CCCCHHHHHHHHHHh
Confidence 88887765554321 236666666666654
No 192
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.39 E-value=4e-12 Score=151.32 Aligned_cols=173 Identities=16% Similarity=0.182 Sum_probs=113.4
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhc----------CCCEEEEcccccccc-cchhhHhhHHHHHHHHHhc-CCCeEEE
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDS----------DFPFVKIISAESMIG-LHESTKCAQIVKVFEDAYK-SPLSIII 599 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~----------~~~~i~v~~~~~~~g-~~~~~~~~~i~~if~~a~~-~~~~il~ 599 (744)
....+++|+||||||||++|+.+|... +..++.++......| .+.++.+..++++|+.++. ..+.|||
T Consensus 206 ~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILf 285 (852)
T TIGR03345 206 RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILF 285 (852)
T ss_pred CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEE
Confidence 445688999999999999999999764 234555544443323 3445666789999998864 4578999
Q ss_pred EeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCC-----CCccccccccceEEEcCCCCHHHHH
Q 004584 600 LDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSF-----LDSVGICDAFSVTYHVPTLKTDDAK 674 (744)
Q Consensus 600 iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~-----l~~~~l~~rf~~~i~~p~~~~~~~~ 674 (744)
|||||.|.+.+.... ....-+.|+..|. ...+.+||||+..+. .|+ .+.+||. .|.|++|+.++..
T Consensus 286 IDEih~l~~~g~~~~--~~d~~n~Lkp~l~-----~G~l~~IgaTT~~e~~~~~~~d~-AL~rRf~-~i~v~eps~~~~~ 356 (852)
T TIGR03345 286 IDEAHTLIGAGGQAG--QGDAANLLKPALA-----RGELRTIAATTWAEYKKYFEKDP-ALTRRFQ-VVKVEEPDEETAI 356 (852)
T ss_pred EeChHHhccCCCccc--cccHHHHhhHHhh-----CCCeEEEEecCHHHHhhhhhccH-HHHHhCe-EEEeCCCCHHHHH
Confidence 999999986543211 1112233444433 247899999987542 455 6677995 8999999999999
Q ss_pred HHHHHc--------cCCCHHHHHHHHHhCC------CCcHHHHHHHHHHHHhc
Q 004584 675 KVLKQL--------NVFAEEDVDSASEALN------DMPIKKLYMLIEMAAQG 713 (744)
Q Consensus 675 ~Il~~~--------~~~~~~~~~~~~~~~~------~g~ir~l~~~l~~a~~~ 713 (744)
.||+.. +....++....+..++ ..-.-+++++++.|+..
T Consensus 357 ~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~ 409 (852)
T TIGR03345 357 RMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACAR 409 (852)
T ss_pred HHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHH
Confidence 997642 2223334333333333 33345577888776543
No 193
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.39 E-value=1.3e-11 Score=134.74 Aligned_cols=198 Identities=20% Similarity=0.259 Sum_probs=133.1
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE-Eecc---
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK-IVNG--- 288 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~-~v~~--- 288 (744)
+-.|++ |.|.++.++.+ ++++... +.++.+|||||||+|||++|+++++.+.+.... .-.|
T Consensus 10 p~~~~~--iig~~~~~~~l-~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 10 PQTFED--VIGQEHIVQTL-KNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred CCcHhh--ccCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 456788 89999999888 5655432 234578999999999999999999998543110 0000
Q ss_pred -----------cchh--cccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHH
Q 004584 289 -----------PEVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (744)
Q Consensus 289 -----------~~l~--~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~L 355 (744)
.++. +.-.......++++++.+... |..+ ...|++|||+|.+. ....+.|
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-p~~~---~~~vviidea~~l~-------------~~~~~~L 137 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYA-PSSG---KYKVYIIDEVHMLS-------------KSAFNAL 137 (355)
T ss_pred HHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcC-cccC---CceEEEEeChhhcC-------------HHHHHHH
Confidence 0110 000012344577788776543 2222 34599999999873 2345677
Q ss_pred HHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcC
Q 004584 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (744)
Q Consensus 356 L~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~ 435 (744)
+..++. ...++++|.+|+.++.+.+++++ |+. .++|++|+.++..++++..+++... ..++..+..+++.+.
T Consensus 138 l~~le~--~~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~---~i~~~a~~~l~~~~~ 209 (355)
T TIGR02397 138 LKTLEE--PPEHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGI---KIEDEALELIARAAD 209 (355)
T ss_pred HHHHhC--CccceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcC
Confidence 877764 33567888888888888899988 764 7899999999999999988765432 123455777888876
Q ss_pred CCChHHHHHHHHHHHH
Q 004584 436 NYSGAELEGVAKSAVS 451 (744)
Q Consensus 436 g~sg~dl~~l~~~A~~ 451 (744)
| +.+.+.+.++.+..
T Consensus 210 g-~~~~a~~~lekl~~ 224 (355)
T TIGR02397 210 G-SLRDALSLLDQLIS 224 (355)
T ss_pred C-ChHHHHHHHHHHHh
Confidence 5 66666666665554
No 194
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=3.6e-11 Score=129.52 Aligned_cols=221 Identities=20% Similarity=0.271 Sum_probs=147.0
Q ss_pred cCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCC---C-cEEecccchhccc-
Q 004584 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGM---E-PKIVNGPEVLSKF- 295 (744)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~---~-~~~v~~~~l~~~~- 295 (744)
+.+.++|++++ ...+...+. -..|.++++|||||||||.+++.+++++... . +.++||...-+.|
T Consensus 19 l~~Re~ei~~l-~~~l~~~~~---------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 19 LPHREEEINQL-ASFLAPALR---------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred ccccHHHHHHH-HHHHHHHhc---------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 89999999999 444433322 2345579999999999999999999998422 2 5678887655432
Q ss_pred --------------ccchHHH-HHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhcc
Q 004584 296 --------------VGETEKN-IRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKID 360 (744)
Q Consensus 296 --------------~g~~~~~-i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d 360 (744)
.|.+... ...+++.... .....||++||+|.|..+.+ .++..|+...+
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~-------~~~~~IvvLDEid~L~~~~~----------~~LY~L~r~~~ 151 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSK-------KGKTVIVILDEVDALVDKDG----------EVLYSLLRAPG 151 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHh-------cCCeEEEEEcchhhhccccc----------hHHHHHHhhcc
Confidence 1221111 2222222222 12357999999999985432 56677776655
Q ss_pred CccCCCcEEEEEEeCCCC---ccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHH---Hhc
Q 004584 361 GVESLNNVLLIGMTNRKD---MLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELA---ART 434 (744)
Q Consensus 361 ~~~~~~~v~vI~~tn~~~---~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la---~~t 434 (744)
.. ..++.+|+.+|..+ .+||.+.+.-.. .+|.|++++.++..+|++...+.....+.+.+++ ++.+| ...
T Consensus 152 ~~--~~~v~vi~i~n~~~~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~v-l~lia~~~a~~ 227 (366)
T COG1474 152 EN--KVKVSIIAVSNDDKFLDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDV-LKLIAALVAAE 227 (366)
T ss_pred cc--ceeEEEEEEeccHHHHHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccH-HHHHHHHHHHc
Confidence 44 56789999999864 578999873222 3489999999999999998887654444343333 44333 333
Q ss_pred CCCChHHHHHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHHhhh
Q 004584 435 KNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (744)
Q Consensus 435 ~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~ 486 (744)
+| ..+-...+|+.|+..|-++. ...++.++...|..++
T Consensus 228 ~G-DAR~aidilr~A~eiAe~~~-------------~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 228 SG-DARKAIDILRRAGEIAEREG-------------SRKVSEDHVREAQEEI 265 (366)
T ss_pred Cc-cHHHHHHHHHHHHHHHHhhC-------------CCCcCHHHHHHHHHHh
Confidence 44 44445678999999887653 3467888888885544
No 195
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=7e-12 Score=143.61 Aligned_cols=200 Identities=18% Similarity=0.215 Sum_probs=136.7
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE-------
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI------- 285 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~------- 285 (744)
.-+|++ |.|.++.++.+ ..++... +.++.+|||||+|+|||++|+.+|+.+++.....
T Consensus 12 P~~f~~--iiGq~~v~~~L-~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 12 PQTFSD--LTGQEHVSRTL-QNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred CCCHHH--ccCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 457888 99999988887 6665432 2345689999999999999999999986532100
Q ss_pred ecc--------cchh--cccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHH
Q 004584 286 VNG--------PEVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (744)
Q Consensus 286 v~~--------~~l~--~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~L 355 (744)
-.| .+++ +.........++++.+.+... |..+ ...|++|||+|.+. ....+.|
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~-p~~~---~~KVvIIdev~~Lt-------------~~a~naL 139 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYL-PSRS---RYKIFIIDEVHMLS-------------TNAFNAL 139 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhc-cccC---CceEEEEEChhhCC-------------HHHHHHH
Confidence 000 0110 001112334677777666432 3222 24599999999874 2356788
Q ss_pred HHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcC
Q 004584 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (744)
Q Consensus 356 L~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~ 435 (744)
|..|+. +..++++|.+|+.++.|.+.+++ |+. .++|..++.++....+...+++... -.++..+..+++.+.
T Consensus 140 Lk~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi---~i~~~al~~la~~a~ 211 (576)
T PRK14965 140 LKTLEE--PPPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGI---SISDAALALVARKGD 211 (576)
T ss_pred HHHHHc--CCCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcC
Confidence 888883 45678888889999999999998 664 6889999998888888776654331 234556788888887
Q ss_pred CCChHHHHHHHHHHHHHH
Q 004584 436 NYSGAELEGVAKSAVSFA 453 (744)
Q Consensus 436 g~sg~dl~~l~~~A~~~a 453 (744)
| +.+++.++++.+..+.
T Consensus 212 G-~lr~al~~Ldqliay~ 228 (576)
T PRK14965 212 G-SMRDSLSTLDQVLAFC 228 (576)
T ss_pred C-CHHHHHHHHHHHHHhc
Confidence 6 7777777777665543
No 196
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=1.4e-11 Score=138.49 Aligned_cols=199 Identities=18% Similarity=0.250 Sum_probs=134.6
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE----ecc
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI----VNG 288 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~----v~~ 288 (744)
.-+|++ |.|.+..++.+ ..++... +.+..+||+||||||||++|+.+|+.+++..... -.|
T Consensus 12 P~~f~d--iiGq~~~v~~L-~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (546)
T PRK14957 12 PQSFAE--VAGQQHALNSL-VHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC 76 (546)
T ss_pred cCcHHH--hcCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 357888 99999999887 5665432 2234689999999999999999999986521100 000
Q ss_pred -----------cchhc--ccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHH
Q 004584 289 -----------PEVLS--KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (744)
Q Consensus 289 -----------~~l~~--~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~L 355 (744)
++++. .........++++.+.+... |..+ ...|+||||+|.+. ....+.|
T Consensus 77 ~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~-p~~g---~~kViIIDEa~~ls-------------~~a~naL 139 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYM-PSQG---RYKVYLIDEVHMLS-------------KQSFNAL 139 (546)
T ss_pred HHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhh-hhcC---CcEEEEEechhhcc-------------HHHHHHH
Confidence 11110 00011223566666665432 2222 24599999999874 3456778
Q ss_pred HHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcC
Q 004584 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (744)
Q Consensus 356 L~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~ 435 (744)
|..|+. ....+.+|++|+.+..+.+.+++ |+ ..++|..++.++....++..+++... ..++..+..+++.+.
T Consensus 140 LK~LEe--pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi---~~e~~Al~~Ia~~s~ 211 (546)
T PRK14957 140 LKTLEE--PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENI---NSDEQSLEYIAYHAK 211 (546)
T ss_pred HHHHhc--CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcC
Confidence 888884 44577788888888889888988 76 47899999999988888877665331 234556778888886
Q ss_pred CCChHHHHHHHHHHHHH
Q 004584 436 NYSGAELEGVAKSAVSF 452 (744)
Q Consensus 436 g~sg~dl~~l~~~A~~~ 452 (744)
| +.+++.++++.++.+
T Consensus 212 G-dlR~alnlLek~i~~ 227 (546)
T PRK14957 212 G-SLRDALSLLDQAISF 227 (546)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 5 788888888877644
No 197
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=1.5e-11 Score=137.90 Aligned_cols=191 Identities=19% Similarity=0.211 Sum_probs=132.2
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCC----------
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME---------- 282 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~---------- 282 (744)
..+|++ |.|.++.++.+ +.++... +.+..+|||||||||||++|+++|+.+.+..
T Consensus 10 P~~~~d--vvGq~~v~~~L-~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 10 PITFDE--VVGQEHVKEVL-LAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred CCCHHH--hcChHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 457888 89999988877 6665432 2344579999999999999999999986421
Q ss_pred ------------cEEecccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHH
Q 004584 283 ------------PKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDS 350 (744)
Q Consensus 283 ------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~ 350 (744)
+..+++. .......++++.+.+.. .|.. +.+.|++|||+|.+. ..
T Consensus 75 sc~~i~~~~h~dv~el~~~------~~~~vd~iR~l~~~~~~-~p~~---~~~kVVIIDEad~ls-------------~~ 131 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAA------SNNSVEDVRDLREKVLL-APLR---GGRKVYILDEAHMMS-------------KS 131 (504)
T ss_pred hhHHHhcCCCCceEEeccc------ccCCHHHHHHHHHHHhh-cccc---CCCeEEEEECccccC-------------HH
Confidence 1122221 11223456666554443 2221 235699999999762 34
Q ss_pred HHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHH
Q 004584 351 IVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQEL 430 (744)
Q Consensus 351 ~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~l 430 (744)
.++.|+..++. ...++++|.+|+.+..+.+.+++ |+. .++|..|+.++..+.++..+++... -.++..+..+
T Consensus 132 a~naLLk~LEe--p~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi---~i~~~Al~~i 203 (504)
T PRK14963 132 AFNALLKTLEE--PPEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGR---EAEPEALQLV 203 (504)
T ss_pred HHHHHHHHHHh--CCCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHH
Confidence 56778888774 33467888888989999999988 765 7899999999999999887765431 1244567888
Q ss_pred HHhcCCCChHHHHHHHHHHH
Q 004584 431 AARTKNYSGAELEGVAKSAV 450 (744)
Q Consensus 431 a~~t~g~sg~dl~~l~~~A~ 450 (744)
++.+.| ..+++.++++.+.
T Consensus 204 a~~s~G-dlR~aln~Lekl~ 222 (504)
T PRK14963 204 ARLADG-AMRDAESLLERLL 222 (504)
T ss_pred HHHcCC-CHHHHHHHHHHHH
Confidence 888876 6667777776654
No 198
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=9.8e-12 Score=142.25 Aligned_cols=199 Identities=21% Similarity=0.275 Sum_probs=137.5
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE--Eecccc
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK--IVNGPE 290 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~--~v~~~~ 290 (744)
+-+|++ |.|.+..++.+ +.++... +.++.+|||||+|+|||++|+++|+.+.|.... .-.|..
T Consensus 14 P~~f~d--IiGQe~~v~~L-~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 14 PKTFDD--IVGQDHIVQTL-KNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 457888 99999998887 6666532 234568999999999999999999998653210 001111
Q ss_pred h---hcc----c--cc---chHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHh
Q 004584 291 V---LSK----F--VG---ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTK 358 (744)
Q Consensus 291 l---~~~----~--~g---~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~ 358 (744)
+ .+. + -+ .+...+|++.+.+... |.. +...|++|||+|.+. ....+.||..
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~-P~~---g~~KV~IIDEa~~LT-------------~~A~NALLKt 141 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNL-PTQ---SKYKIYIIDEVHMLS-------------KSAFNALLKT 141 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhc-hhc---CCCEEEEEEChhhCC-------------HHHHHHHHHH
Confidence 1 000 0 01 2245578887766543 222 234599999999874 2356788888
Q ss_pred ccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCC
Q 004584 359 IDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYS 438 (744)
Q Consensus 359 ~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~s 438 (744)
|+. +...+++|.+|+.++.|.+.+++ |+. .++|.+|+.++..++|+..+.+... -.++..+..++..+.| +
T Consensus 142 LEE--PP~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI---~id~eAl~~LA~lS~G-s 212 (725)
T PRK07133 142 LEE--PPKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENI---SYEKNALKLIAKLSSG-S 212 (725)
T ss_pred hhc--CCCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCC-C
Confidence 884 45578888888999999999998 775 7899999999999888876654331 1233447778888876 7
Q ss_pred hHHHHHHHHHHHHH
Q 004584 439 GAELEGVAKSAVSF 452 (744)
Q Consensus 439 g~dl~~l~~~A~~~ 452 (744)
.+++..+++.+..+
T Consensus 213 lR~AlslLekl~~y 226 (725)
T PRK07133 213 LRDALSIAEQVSIF 226 (725)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777765543
No 199
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=1.6e-11 Score=140.55 Aligned_cols=179 Identities=18% Similarity=0.198 Sum_probs=121.4
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhcCCCEEE-------------Ecccccccccc-hhhHhhHHHHHHHHHhc----CC
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVK-------------IISAESMIGLH-ESTKCAQIVKVFEDAYK----SP 594 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~-------------v~~~~~~~g~~-~~~~~~~i~~if~~a~~----~~ 594 (744)
.+..+||+||+|+|||++|+++|....+.--. -..++.+.+.. .......++++.+.+.. +.
T Consensus 39 l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~ 118 (725)
T PRK07133 39 ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSK 118 (725)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCC
Confidence 34556999999999999999999875432100 00011111110 11234567888777653 45
Q ss_pred CeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCCCCHHHHH
Q 004584 595 LSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAK 674 (744)
Q Consensus 595 ~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~ 674 (744)
..|++|||+|.|. ...+++|+..|+..+. .+++|.+|+.++.+.+ .+++|+ .+++|.+++.+++.
T Consensus 119 ~KV~IIDEa~~LT----------~~A~NALLKtLEEPP~---~tifILaTte~~KLl~-TI~SRc-q~ieF~~L~~eeI~ 183 (725)
T PRK07133 119 YKIYIIDEVHMLS----------KSAFNALLKTLEEPPK---HVIFILATTEVHKIPL-TILSRV-QRFNFRRISEDEIV 183 (725)
T ss_pred CEEEEEEChhhCC----------HHHHHHHHHHhhcCCC---ceEEEEEcCChhhhhH-HHHhhc-eeEEccCCCHHHHH
Confidence 6899999999984 4567788888887543 5566666677776655 455666 58999999999988
Q ss_pred HHHHH----ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHH
Q 004584 675 KVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDC 737 (744)
Q Consensus 675 ~Il~~----~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~a 737 (744)
..++. .+...+++....++..++|++|.++.+++.+.... ...|+.+++.+.
T Consensus 184 ~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~~y~-----------~~~It~e~V~el 239 (725)
T PRK07133 184 SRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFG-----------NNKITLKNVEEL 239 (725)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------cCCCCHHHHHHH
Confidence 77765 34445566677888899999999999999876542 223777766654
No 200
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.38 E-value=6.8e-12 Score=138.94 Aligned_cols=191 Identities=19% Similarity=0.225 Sum_probs=121.1
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhhc
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLE 608 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~ 608 (744)
.+..+++||||+|+|||++++++++.. +..++.+.... +...........-...|...+. ...+|+|||++.+.+
T Consensus 139 ~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~-f~~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~~ 216 (445)
T PRK12422 139 FPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSEL-FTEHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFSG 216 (445)
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHH-HHHHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhcC
Confidence 345679999999999999999999754 56677664432 2111110000001123554443 457999999999853
Q ss_pred cCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCc--cccccccc--eEEEcCCCCHHHHHHHHHHc----
Q 004584 609 YVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDS--VGICDAFS--VTYHVPTLKTDDAKKVLKQL---- 680 (744)
Q Consensus 609 ~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~--~~l~~rf~--~~i~~p~~~~~~~~~Il~~~---- 680 (744)
. ...++.+...++.+...+ +.+|++++..|..+.. ..+++||. ..+.+++|+.+++..|+++.
T Consensus 217 k--------~~~qeelf~l~N~l~~~~-k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~ 287 (445)
T PRK12422 217 K--------GATQEEFFHTFNSLHTEG-KLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEAL 287 (445)
T ss_pred C--------hhhHHHHHHHHHHHHHCC-CcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHc
Confidence 2 223444555544432222 4466655555554432 26678985 88999999999999999973
Q ss_pred cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHH---hcccCCcccccccCCCCcchhhHHHHHHHH
Q 004584 681 NVFAEEDVDSASEALNDMPIKKLYMLIEMAA---QGEQGGAAEAIYSGREKIKISHFYDCLQDM 741 (744)
Q Consensus 681 ~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~---~~a~~~~~~a~~~g~~~It~e~~~~al~~~ 741 (744)
+...++++...+.....+++|++...++..+ ..+.- .+ ..||.+.+.+++.++
T Consensus 288 ~~~l~~evl~~la~~~~~dir~L~g~l~~l~~~~a~~~~-------~~-~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 288 SIRIEETALDFLIEALSSNVKSLLHALTLLAKRVAYKKL-------SH-QLLYVDDIKALLHDV 343 (445)
T ss_pred CCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh-------hC-CCCCHHHHHHHHHHh
Confidence 4556778888887778899999999888774 22111 12 336666666666654
No 201
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.37 E-value=1.8e-11 Score=133.51 Aligned_cols=175 Identities=17% Similarity=0.233 Sum_probs=120.7
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhcCCC------------------------EEEEcccccccccchhhHhhHHHHHH
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFP------------------------FVKIISAESMIGLHESTKCAQIVKVF 587 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~~~~------------------------~i~v~~~~~~~g~~~~~~~~~i~~if 587 (744)
..+..+||+||||+|||++|++++...... ++.++.. ...+...+++++
T Consensus 34 ~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~ 106 (355)
T TIGR02397 34 RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAA-------SNNGVDDIREIL 106 (355)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeecc-------ccCCHHHHHHHH
Confidence 345678999999999999999999765321 2222211 112334577788
Q ss_pred HHHhc----CCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEE
Q 004584 588 EDAYK----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTY 663 (744)
Q Consensus 588 ~~a~~----~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i 663 (744)
+.+.. +...|++|||+|.+. ...++.|+..++..+. .+++|.+|+.++.+.+ .+++|+ ..+
T Consensus 107 ~~~~~~p~~~~~~vviidea~~l~----------~~~~~~Ll~~le~~~~---~~~lIl~~~~~~~l~~-~l~sr~-~~~ 171 (355)
T TIGR02397 107 DNVKYAPSSGKYKVYIIDEVHMLS----------KSAFNALLKTLEEPPE---HVVFILATTEPHKIPA-TILSRC-QRF 171 (355)
T ss_pred HHHhcCcccCCceEEEEeChhhcC----------HHHHHHHHHHHhCCcc---ceeEEEEeCCHHHHHH-HHHhhe-eEE
Confidence 77653 234699999999874 3456677777766432 4555656676665444 455676 588
Q ss_pred EcCCCCHHHHHHHHHH----ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHH
Q 004584 664 HVPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 739 (744)
Q Consensus 664 ~~p~~~~~~~~~Il~~----~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~ 739 (744)
+|++|+.+++..+++. .+...+++....+...++|++|.+.+.++.+..... ..||.+++.+++.
T Consensus 172 ~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~-----------~~it~~~v~~~~~ 240 (355)
T TIGR02397 172 DFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGN-----------GNITYEDVNELLG 240 (355)
T ss_pred EcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcC-----------CCCCHHHHHHHhC
Confidence 9999999999888875 344456677777777889999999999988776521 2388887776653
No 202
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=1.3e-11 Score=138.49 Aligned_cols=172 Identities=17% Similarity=0.245 Sum_probs=119.2
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhcCC------------------------CEEEEcccccccccchhhHhhHHHHHHH
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDSDF------------------------PFVKIISAESMIGLHESTKCAQIVKVFE 588 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~~~------------------------~~i~v~~~~~~~g~~~~~~~~~i~~if~ 588 (744)
.+.++||+||+|+|||++|+++|+...+ .++.++... ....+.++++.+
T Consensus 37 l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas-------~igVd~IReIi~ 109 (605)
T PRK05896 37 LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAAS-------NNGVDEIRNIID 109 (605)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEecccc-------ccCHHHHHHHHH
Confidence 3466899999999999999999976532 122221111 123445777777
Q ss_pred HHhc----CCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEE
Q 004584 589 DAYK----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYH 664 (744)
Q Consensus 589 ~a~~----~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~ 664 (744)
.+.. +...|++|||+|.|. ...+++|+..|+..+. .+++|.+|+.+..+.+ .+++|+ ..++
T Consensus 110 ~~~~~P~~~~~KVIIIDEad~Lt----------~~A~NaLLKtLEEPp~---~tvfIL~Tt~~~KLl~-TI~SRc-q~ie 174 (605)
T PRK05896 110 NINYLPTTFKYKVYIIDEAHMLS----------TSAWNALLKTLEEPPK---HVVFIFATTEFQKIPL-TIISRC-QRYN 174 (605)
T ss_pred HHHhchhhCCcEEEEEechHhCC----------HHHHHHHHHHHHhCCC---cEEEEEECCChHhhhH-HHHhhh-hhcc
Confidence 6543 345799999999984 4467788888887543 4566666666766654 455665 4899
Q ss_pred cCCCCHHHHHHHHHH----ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHH
Q 004584 665 VPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDC 737 (744)
Q Consensus 665 ~p~~~~~~~~~Il~~----~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~a 737 (744)
|++++.+++...+++ .+...+++....+...++|++|.+++.++.+.... + ..|+.+++.+.
T Consensus 175 F~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~----------~-~~It~e~V~el 240 (605)
T PRK05896 175 FKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFK----------N-SEIDIEDINKT 240 (605)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhc----------C-CCCCHHHHHHH
Confidence 999999998877775 24345556667778888999999999999876553 2 12777666653
No 203
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.37 E-value=3.5e-12 Score=152.55 Aligned_cols=173 Identities=17% Similarity=0.190 Sum_probs=119.9
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhc----------CCCEEEEcccccccc-cchhhHhhHHHHHHHHHhcCCCeEEEE
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDS----------DFPFVKIISAESMIG-LHESTKCAQIVKVFEDAYKSPLSIIIL 600 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~----------~~~~i~v~~~~~~~g-~~~~~~~~~i~~if~~a~~~~~~il~i 600 (744)
.+..+++|+||||||||++|+.+|... +.+++.++....+.| .+.++.++.++++|+.+....+.||||
T Consensus 198 ~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfi 277 (821)
T CHL00095 198 RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVI 277 (821)
T ss_pred cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEE
Confidence 355689999999999999999999764 367788776665544 345666778999999998778899999
Q ss_pred eccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCC-----CCccccccccceEEEcCCCCHHHHHH
Q 004584 601 DDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSF-----LDSVGICDAFSVTYHVPTLKTDDAKK 675 (744)
Q Consensus 601 DEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~-----l~~~~l~~rf~~~i~~p~~~~~~~~~ 675 (744)
||||.|.+.+.... +..+.+.|...+. ...+.+||+|+..+. .|+ .+.+||. .+.++.|+.++...
T Consensus 278 DEih~l~~~g~~~g--~~~~a~lLkp~l~-----rg~l~~IgaTt~~ey~~~ie~D~-aL~rRf~-~I~v~ep~~~e~~a 348 (821)
T CHL00095 278 DEVHTLIGAGAAEG--AIDAANILKPALA-----RGELQCIGATTLDEYRKHIEKDP-ALERRFQ-PVYVGEPSVEETIE 348 (821)
T ss_pred ecHHHHhcCCCCCC--cccHHHHhHHHHh-----CCCcEEEEeCCHHHHHHHHhcCH-HHHhcce-EEecCCCCHHHHHH
Confidence 99999986543211 1123344444433 247889999997653 333 6678886 67999999999888
Q ss_pred HHHHc--------cCCCHHHHHHHHHhCC------CCcHHHHHHHHHHHHhc
Q 004584 676 VLKQL--------NVFAEEDVDSASEALN------DMPIKKLYMLIEMAAQG 713 (744)
Q Consensus 676 Il~~~--------~~~~~~~~~~~~~~~~------~g~ir~l~~~l~~a~~~ 713 (744)
|++.. +...++++...+..++ ..-..+++.+++.|+..
T Consensus 349 ILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~ 400 (821)
T CHL00095 349 ILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSR 400 (821)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHH
Confidence 88752 2334445554444444 22355677888876653
No 204
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.37 E-value=2.9e-11 Score=139.46 Aligned_cols=194 Identities=18% Similarity=0.221 Sum_probs=119.8
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhc----------CCCEEEEccccc----------ccccchhhHhhHHHHHHHH---
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDS----------DFPFVKIISAES----------MIGLHESTKCAQIVKVFED--- 589 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~----------~~~~i~v~~~~~----------~~g~~~~~~~~~i~~if~~--- 589 (744)
.+.+++|+||||||||++|++++... +.+|+.+++... ++|.......+..++.+..
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl 253 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGV 253 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCC
Confidence 35679999999999999999998554 357888876542 1111100000001111111
Q ss_pred -------HhcCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCC-------------------------CCCCc
Q 004584 590 -------AYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP-------------------------PKGKK 637 (744)
Q Consensus 590 -------a~~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~-------------------------~~~~~ 637 (744)
......++|||||++.|- ...++.|+..|+.-. .....
T Consensus 254 ~~~~~g~v~~asgGvL~LDEi~~Ld----------~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~ 323 (615)
T TIGR02903 254 PEPKTGLVTDAHGGVLFIDEIGELD----------PLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPAD 323 (615)
T ss_pred CchhcCchhhcCCCeEEEeccccCC----------HHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccce
Confidence 011234799999999873 455666666665411 01224
Q ss_pred EEEEEeC-CCCCCCCccccccccceEEEcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHh
Q 004584 638 LLVIGTT-SEVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQ 712 (744)
Q Consensus 638 v~vi~~t-n~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~----~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~ 712 (744)
+++|++| +.++.+++ .+++||. .++|++++.+++..|+++. +...++++..++..++. +.|+++++++.+..
T Consensus 324 ~VLI~aTt~~~~~l~~-aLrSR~~-~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~-~gRraln~L~~~~~ 400 (615)
T TIGR02903 324 FVLIGATTRDPEEINP-ALRSRCA-EVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYTI-EGRKAVNILADVYG 400 (615)
T ss_pred EEEEEeccccccccCH-HHHhcee-EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence 5666655 45666666 5678876 6799999999999999974 33334567777777664 66999998877644
Q ss_pred cccCCccc-ccccCCCCcchhhHHHHHH
Q 004584 713 GEQGGAAE-AIYSGREKIKISHFYDCLQ 739 (744)
Q Consensus 713 ~a~~~~~~-a~~~g~~~It~e~~~~al~ 739 (744)
.+-.+... +...+...|+.+|+.++++
T Consensus 401 ~~~~~~~~~~~~~~~~~I~~edv~~~l~ 428 (615)
T TIGR02903 401 YALYRAAEAGKENDKVTITQDDVYEVIQ 428 (615)
T ss_pred HHHHHHHHhccCCCCeeECHHHHHHHhC
Confidence 32110000 0112345799999999986
No 205
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=8.4e-12 Score=141.28 Aligned_cols=199 Identities=20% Similarity=0.251 Sum_probs=136.7
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE-eccc--
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI-VNGP-- 289 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~-v~~~-- 289 (744)
+-+|++ |.|.++.++.+ ..++... +.++.+||+||||+|||++|+.+|+.+++..... -.|.
T Consensus 12 P~~f~d--ivGq~~v~~~L-~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C 76 (527)
T PRK14969 12 PKSFSE--LVGQEHVVRAL-TNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVC 76 (527)
T ss_pred CCcHHH--hcCcHHHHHHH-HHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 347888 99999998887 6665432 2234689999999999999999999997532110 0010
Q ss_pred ------------chh--cccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHH
Q 004584 290 ------------EVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (744)
Q Consensus 290 ------------~l~--~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~L 355 (744)
+++ ..........+|++.+.+.. .|..+ ...|+||||+|.+. ....+.|
T Consensus 77 ~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~-~p~~~---~~kVvIIDEad~ls-------------~~a~naL 139 (527)
T PRK14969 77 SACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQY-APTRG---RFKVYIIDEVHMLS-------------KSAFNAM 139 (527)
T ss_pred HHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhh-CcccC---CceEEEEcCcccCC-------------HHHHHHH
Confidence 110 00011234567787777643 33322 34699999999874 3456778
Q ss_pred HHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcC
Q 004584 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (744)
Q Consensus 356 L~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~ 435 (744)
|..++. ....+.+|.+|+.++.+.+.+++ |+ ..++|..++.++..+.++..+++.. ...++..+..+++.+.
T Consensus 140 LK~LEe--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~eg---i~~~~~al~~la~~s~ 211 (527)
T PRK14969 140 LKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQEN---IPFDATALQLLARAAA 211 (527)
T ss_pred HHHHhC--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcC
Confidence 888884 44578888888888888888888 76 4789999999988888877765432 1224445778888877
Q ss_pred CCChHHHHHHHHHHHHH
Q 004584 436 NYSGAELEGVAKSAVSF 452 (744)
Q Consensus 436 g~sg~dl~~l~~~A~~~ 452 (744)
| +.+++.++++.+..+
T Consensus 212 G-slr~al~lldqai~~ 227 (527)
T PRK14969 212 G-SMRDALSLLDQAIAY 227 (527)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 5 788888888877654
No 206
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.37 E-value=1.2e-11 Score=145.50 Aligned_cols=218 Identities=11% Similarity=0.143 Sum_probs=132.7
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEccccc-----cccc---chhhHhhHH
Q 004584 512 HKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES-----MIGL---HESTKCAQI 583 (744)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~-----~~g~---~~~~~~~~i 583 (744)
++.+++....+..............++|+||||||||++++.+|...+.+|+++..... +.|. +.+.....+
T Consensus 327 ~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~ 406 (784)
T PRK10787 327 LERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKL 406 (784)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHH
Confidence 33444444444443333333445679999999999999999999999999988753321 1221 112222245
Q ss_pred HHHHHHHhcCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhcc------------CCCCCCcEEEEEeCCCCCCCC
Q 004584 584 VKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKR------------LPPKGKKLLVIGTTSEVSFLD 651 (744)
Q Consensus 584 ~~if~~a~~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~------------~~~~~~~v~vi~~tn~~~~l~ 651 (744)
.+.+..+.... .|++|||||++..... ....++|+..++. .+-...++++|||+|... ++
T Consensus 407 ~~~l~~~~~~~-~villDEidk~~~~~~------g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~-i~ 478 (784)
T PRK10787 407 IQKMAKVGVKN-PLFLLDEIDKMSSDMR------GDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMN-IP 478 (784)
T ss_pred HHHHHhcCCCC-CEEEEEChhhcccccC------CCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCC-CC
Confidence 55555554333 4899999999864221 1235677777663 112235789999998874 65
Q ss_pred ccccccccceEEEcCCCCHHHHHHHHHHcc---------------CCCHHHHHHHHHhCC-CCcHHHHHHHHHHHHhccc
Q 004584 652 SVGICDAFSVTYHVPTLKTDDAKKVLKQLN---------------VFAEEDVDSASEALN-DMPIKKLYMLIEMAAQGEQ 715 (744)
Q Consensus 652 ~~~l~~rf~~~i~~p~~~~~~~~~Il~~~~---------------~~~~~~~~~~~~~~~-~g~ir~l~~~l~~a~~~a~ 715 (744)
+ .+++|+. .+.|++|+.++..+|++++- .++++-+..++..++ ..++|.+-..++......-
T Consensus 479 ~-aLl~R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l 556 (784)
T PRK10787 479 A-PLLDRME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAV 556 (784)
T ss_pred H-HHhccee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHH
Confidence 5 6678985 89999999999999988631 234555555665544 5667776666554433211
Q ss_pred CCcccccccCCCCcchhhHHHHHH
Q 004584 716 GGAAEAIYSGREKIKISHFYDCLQ 739 (744)
Q Consensus 716 ~~~~~a~~~g~~~It~e~~~~al~ 739 (744)
.+....-....-.|+.+++.+.+.
T Consensus 557 ~~~~~~~~~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 557 KQLLLDKSLKHIEINGDNLHDYLG 580 (784)
T ss_pred HHHHhcCCCceeeecHHHHHHHhC
Confidence 100000001224688888877765
No 207
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=2e-11 Score=138.41 Aligned_cols=199 Identities=15% Similarity=0.138 Sum_probs=134.0
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE----e--
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI----V-- 286 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~----v-- 286 (744)
.-+|++ |.|.+..++.+ +.++... +.++.+||+||+|||||++|+++|+.+++..... -
T Consensus 9 P~~f~e--ivGq~~i~~~L-~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 9 PATFAE--VVGQEHVTEPL-SSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred CCcHHH--hcCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 446888 99999998888 6666432 2334589999999999999999999987531000 0
Q ss_pred -ccc----------chhc--ccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHH
Q 004584 287 -NGP----------EVLS--KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVN 353 (744)
Q Consensus 287 -~~~----------~l~~--~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~ 353 (744)
+|- +++. ......-..++++.+.+.. .|..+ ...|+||||+|.+. ....+
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~-~P~~~---~~KVvIIDEah~Lt-------------~~A~N 136 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFY-APAQS---RYRIFIVDEAHMVT-------------TAGFN 136 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHh-hhhcC---CceEEEEECCCcCC-------------HHHHH
Confidence 000 1100 0000123456666555532 22222 23599999999884 23667
Q ss_pred HHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHh
Q 004584 354 QLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAAR 433 (744)
Q Consensus 354 ~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~ 433 (744)
.||..|+. ...++++|.+|+.++.+.+.+++ |. ..++|..++.++..+.++..+++... ..++..+..+++.
T Consensus 137 ALLK~LEE--pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi---~i~~~al~~Ia~~ 208 (584)
T PRK14952 137 ALLKIVEE--PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGV---VVDDAVYPLVIRA 208 (584)
T ss_pred HHHHHHhc--CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHH
Confidence 78888883 45578888888999999999998 74 47899999999988888887765431 1234456667777
Q ss_pred cCCCChHHHHHHHHHHHHH
Q 004584 434 TKNYSGAELEGVAKSAVSF 452 (744)
Q Consensus 434 t~g~sg~dl~~l~~~A~~~ 452 (744)
+.| +.+++.++++..+.+
T Consensus 209 s~G-dlR~aln~Ldql~~~ 226 (584)
T PRK14952 209 GGG-SPRDTLSVLDQLLAG 226 (584)
T ss_pred cCC-CHHHHHHHHHHHHhc
Confidence 655 778888888776543
No 208
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=3.1e-11 Score=134.86 Aligned_cols=160 Identities=18% Similarity=0.165 Sum_probs=112.3
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhcCC------------------------CEEEEcccccccccchhhHhhHHHHHHH
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDSDF------------------------PFVKIISAESMIGLHESTKCAQIVKVFE 588 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~~~------------------------~~i~v~~~~~~~g~~~~~~~~~i~~if~ 588 (744)
.+..+||+||+|+|||++|+++|+.... .++.++... ....+.++++.+
T Consensus 35 l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas-------~~gId~IRelie 107 (535)
T PRK08451 35 LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAAS-------NRGIDDIRELIE 107 (535)
T ss_pred CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecccc-------ccCHHHHHHHHH
Confidence 3445699999999999999999976521 122221111 112456777766
Q ss_pred HHhc----CCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEE
Q 004584 589 DAYK----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYH 664 (744)
Q Consensus 589 ~a~~----~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~ 664 (744)
.+.. +...|++|||+|.|. ...+++|+..|+..+. .+.+|.+|+.+..+.+ .+++| +..++
T Consensus 108 ~~~~~P~~~~~KVvIIDEad~Lt----------~~A~NALLK~LEEpp~---~t~FIL~ttd~~kL~~-tI~SR-c~~~~ 172 (535)
T PRK08451 108 QTKYKPSMARFKIFIIDEVHMLT----------KEAFNALLKTLEEPPS---YVKFILATTDPLKLPA-TILSR-TQHFR 172 (535)
T ss_pred HHhhCcccCCeEEEEEECcccCC----------HHHHHHHHHHHhhcCC---ceEEEEEECChhhCch-HHHhh-ceeEE
Confidence 5432 345799999999984 5678889988888643 3444445555655554 45667 67999
Q ss_pred cCCCCHHHHHHHHHH----ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcc
Q 004584 665 VPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGE 714 (744)
Q Consensus 665 ~p~~~~~~~~~Il~~----~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a 714 (744)
|.+++.+++...+++ .+...+++....+...++|++|.+++.++.+...+
T Consensus 173 F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~~ 226 (535)
T PRK08451 173 FKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYC 226 (535)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhc
Confidence 999998888777764 44555677788888899999999999999877653
No 209
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.36 E-value=7.1e-12 Score=139.20 Aligned_cols=190 Identities=19% Similarity=0.260 Sum_probs=118.7
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhc-----CCCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhhc
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDS-----DFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLE 608 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~-----~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~ 608 (744)
..+++||||||||||++++++++.. +..++.+.+.+.+......-....+.+ |...+...+.+|+|||++.+.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIG 208 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcC
Confidence 4569999999999999999999764 345566644432211101000111222 3333334578999999999863
Q ss_pred cCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCcc--ccccccc--eEEEcCCCCHHHHHHHHHHc----
Q 004584 609 YVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSV--GICDAFS--VTYHVPTLKTDDAKKVLKQL---- 680 (744)
Q Consensus 609 ~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~--~l~~rf~--~~i~~p~~~~~~~~~Il~~~---- 680 (744)
. ...+..++..++.+...+ ..+|+++...|..+... .+++||. ..+.+++|+.+.+..|+++.
T Consensus 209 ~--------~~~q~elf~~~n~l~~~~-k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~ 279 (440)
T PRK14088 209 K--------TGVQTELFHTFNELHDSG-KQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIE 279 (440)
T ss_pred c--------HHHHHHHHHHHHHHHHcC-CeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhc
Confidence 2 123334444444432323 34666555566554332 4667874 67899999999999999974
Q ss_pred cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHHHH
Q 004584 681 NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDM 741 (744)
Q Consensus 681 ~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~~~ 741 (744)
+...++++...++....+++|++..++......+.. ....||.+...++|.++
T Consensus 280 ~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~--------~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 280 HGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKET--------TGEEVDLKEAILLLKDF 332 (440)
T ss_pred CCCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHH--------hCCCCCHHHHHHHHHHH
Confidence 355678889999999999999998888766443321 11235555555555543
No 210
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.36 E-value=2.4e-11 Score=123.76 Aligned_cols=205 Identities=15% Similarity=0.172 Sum_probs=124.9
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHh--cCCCcEEeccc
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGP 289 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l--~~~~~~~v~~~ 289 (744)
+..+|++.-.|+-+..+..+ +.+.. +.....+++|+||||||||++|+++++.+ .+..+.++++.
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l-~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARL-RELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred ChhhhcccccCCcHHHHHHH-HHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 45678886334444444443 55432 22445689999999999999999999986 34456666665
Q ss_pred chhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEE
Q 004584 290 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVL 369 (744)
Q Consensus 290 ~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~ 369 (744)
++... +.... ...+|+|||+|.+.+ ..... |+..++.....+..+
T Consensus 80 ~~~~~------------~~~~~----------~~~~liiDdi~~l~~----------~~~~~---L~~~~~~~~~~~~~~ 124 (227)
T PRK08903 80 SPLLA------------FDFDP----------EAELYAVDDVERLDD----------AQQIA---LFNLFNRVRAHGQGA 124 (227)
T ss_pred HhHHH------------Hhhcc----------cCCEEEEeChhhcCc----------hHHHH---HHHHHHHHHHcCCcE
Confidence 54211 11110 134999999998731 11222 333333323334443
Q ss_pred EEEEeCCCC---ccchhhcCCCcc--ceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHH
Q 004584 370 LIGMTNRKD---MLDEALLRPGRL--EVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEG 444 (744)
Q Consensus 370 vI~~tn~~~---~id~al~r~gRf--~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~ 444 (744)
+|.+++.+. .+.+.+.+ || ...+++++|+.+++..+++.+...... -.++..++.|++...| +.+++..
T Consensus 125 vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v---~l~~~al~~L~~~~~g-n~~~l~~ 198 (227)
T PRK08903 125 LLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGL---QLADEVPDYLLTHFRR-DMPSLMA 198 (227)
T ss_pred EEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhccC-CHHHHHH
Confidence 444444322 24566776 66 468999999999999998876554321 2344567888886655 8889988
Q ss_pred HHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHHh
Q 004584 445 VAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALY 484 (744)
Q Consensus 445 l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~ 484 (744)
+++.-..++.... ..||.....+++.
T Consensus 199 ~l~~l~~~~~~~~--------------~~i~~~~~~~~l~ 224 (227)
T PRK08903 199 LLDALDRYSLEQK--------------RPVTLPLLREMLA 224 (227)
T ss_pred HHHHHHHHHHHhC--------------CCCCHHHHHHHHh
Confidence 8887655554322 3466666666554
No 211
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=1.8e-11 Score=140.27 Aligned_cols=173 Identities=16% Similarity=0.156 Sum_probs=121.1
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhcCCC------------------------EEEEcccccccccchhhHhhHHHHHH
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFP------------------------FVKIISAESMIGLHESTKCAQIVKVF 587 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~~~~------------------------~i~v~~~~~~~g~~~~~~~~~i~~if 587 (744)
..+..+||+||+|+|||++|+++|+...+. ++.+++.+ ....+.++++.
T Consensus 36 ~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s-------~~~v~~ir~l~ 108 (576)
T PRK14965 36 RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGAS-------NTGVDDIRELR 108 (576)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccC-------ccCHHHHHHHH
Confidence 344557999999999999999999875431 22222211 12344677777
Q ss_pred HHHhc----CCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEE
Q 004584 588 EDAYK----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTY 663 (744)
Q Consensus 588 ~~a~~----~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i 663 (744)
+.+.. +...|++|||+|.|. ...+++|+..|+..++ .+++|.+|+.++.+.+ .+++|. ..+
T Consensus 109 ~~~~~~p~~~~~KVvIIdev~~Lt----------~~a~naLLk~LEepp~---~~~fIl~t~~~~kl~~-tI~SRc-~~~ 173 (576)
T PRK14965 109 ENVKYLPSRSRYKIFIIDEVHMLS----------TNAFNALLKTLEEPPP---HVKFIFATTEPHKVPI-TILSRC-QRF 173 (576)
T ss_pred HHHHhccccCCceEEEEEChhhCC----------HHHHHHHHHHHHcCCC---CeEEEEEeCChhhhhH-HHHHhh-hhh
Confidence 76642 345799999999984 4567788888887543 5556666666665554 445564 589
Q ss_pred EcCCCCHHHHHHHHHH----ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHH
Q 004584 664 HVPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDC 737 (744)
Q Consensus 664 ~~p~~~~~~~~~Il~~----~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~a 737 (744)
+|.+++.+++...+.. .+...+++....+...++|++|.+++.++.+.... + +.||.+++.+.
T Consensus 174 ~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqliay~----------g-~~It~edV~~l 240 (576)
T PRK14965 174 DFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFC----------G-DAVGDDDVAEL 240 (576)
T ss_pred hcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----------c-CCCCHHHHHHH
Confidence 9999998887766654 45556777788888889999999999998776552 1 24777777655
No 212
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.36 E-value=2e-11 Score=141.98 Aligned_cols=192 Identities=21% Similarity=0.290 Sum_probs=124.7
Q ss_pred CccccccCcCchHHHHHH--HHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccc
Q 004584 213 EFNLQSLGIGGLSAEFAD--IFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE 290 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~--i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~ 290 (744)
+-+|++ +.|.++.+.+ .+++++... ...+++||||||||||++|+++++.++ ..+..+++..
T Consensus 24 P~tldd--~vGQe~ii~~~~~L~~~i~~~-------------~~~slLL~GPpGtGKTTLA~aIA~~~~-~~f~~lna~~ 87 (725)
T PRK13341 24 PRTLEE--FVGQDHILGEGRLLRRAIKAD-------------RVGSLILYGPPGVGKTTLARIIANHTR-AHFSSLNAVL 87 (725)
T ss_pred CCcHHH--hcCcHHHhhhhHHHHHHHhcC-------------CCceEEEECCCCCCHHHHHHHHHHHhc-Ccceeehhhh
Confidence 356788 8899888753 335555422 224799999999999999999999985 4445555431
Q ss_pred hhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEE
Q 004584 291 VLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLL 370 (744)
Q Consensus 291 l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~v 370 (744)
.....+++.++.+....+.. ....+|||||+|.+.. ...+.|+..++. +.+++
T Consensus 88 -------~~i~dir~~i~~a~~~l~~~---~~~~IL~IDEIh~Ln~-------------~qQdaLL~~lE~----g~IiL 140 (725)
T PRK13341 88 -------AGVKDLRAEVDRAKERLERH---GKRTILFIDEVHRFNK-------------AQQDALLPWVEN----GTITL 140 (725)
T ss_pred -------hhhHHHHHHHHHHHHHhhhc---CCceEEEEeChhhCCH-------------HHHHHHHHHhcC----ceEEE
Confidence 11223455555543221111 1245999999998742 123345555542 46778
Q ss_pred EEEeCC--CCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhccc----ccCCCCCcccHHHHHHhcCCCChHHHHH
Q 004584 371 IGMTNR--KDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMK----ENSFLAPDVNLQELAARTKNYSGAELEG 444 (744)
Q Consensus 371 I~~tn~--~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~----~~~~~~~~~~l~~la~~t~g~sg~dl~~ 444 (744)
|++|+. ...+++++++ |. ..+.|++++.+++..|++..+.... ......++..++.|++.+.| ..+++.+
T Consensus 141 I~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln 216 (725)
T PRK13341 141 IGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLN 216 (725)
T ss_pred EEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHH
Confidence 877643 3468899998 54 3689999999999999998876321 11112344457888888754 7788888
Q ss_pred HHHHHHH
Q 004584 445 VAKSAVS 451 (744)
Q Consensus 445 l~~~A~~ 451 (744)
+++.+..
T Consensus 217 ~Le~a~~ 223 (725)
T PRK13341 217 ALELAVE 223 (725)
T ss_pred HHHHHHH
Confidence 8887663
No 213
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.36 E-value=6.1e-12 Score=134.32 Aligned_cols=193 Identities=21% Similarity=0.241 Sum_probs=130.5
Q ss_pred ccceeecCcchhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEcccccccccchhh
Q 004584 502 LNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIGLHEST 578 (744)
Q Consensus 502 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~~~g~~~~~ 578 (744)
..++++-...+..+++.. +.+- ....+|||.|++||||..+|++|+..+ ..|||+++|+..--+.-|++
T Consensus 222 ~~~iIG~S~am~~ll~~i----~~VA----~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESE 293 (550)
T COG3604 222 VGGIIGRSPAMRQLLKEI----EVVA----KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESE 293 (550)
T ss_pred cccceecCHHHHHHHHHH----HHHh----cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHH
Confidence 456777765544444433 2222 234679999999999999999999876 57999999987633333444
Q ss_pred HhhHHHHHHHHHhcC--------CCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCC-----C---CCCcEEEEE
Q 004584 579 KCAQIVKVFEDAYKS--------PLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP-----P---KGKKLLVIG 642 (744)
Q Consensus 579 ~~~~i~~if~~a~~~--------~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~-----~---~~~~v~vi~ 642 (744)
-....+..|.-|... ..+-||||||..|. -.+|..||..|..-. . ...+|.||+
T Consensus 294 LFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelP----------L~lQaKLLRvLQegEieRvG~~r~ikVDVRiIA 363 (550)
T COG3604 294 LFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELP----------LALQAKLLRVLQEGEIERVGGDRTIKVDVRVIA 363 (550)
T ss_pred HhcccccccccchhccCcceeecCCCeEechhhccCC----------HHHHHHHHHHHhhcceeecCCCceeEEEEEEEe
Confidence 444455555554321 23679999998874 556666776665422 1 123689999
Q ss_pred eCCCCCCCCccccccccc---------eEEEcCCCC--HHHHHHHHHHc--------c----CCCHHHHHHHHHhCCCCc
Q 004584 643 TTSEVSFLDSVGICDAFS---------VTYHVPTLK--TDDAKKVLKQL--------N----VFAEEDVDSASEALNDMP 699 (744)
Q Consensus 643 ~tn~~~~l~~~~l~~rf~---------~~i~~p~~~--~~~~~~Il~~~--------~----~~~~~~~~~~~~~~~~g~ 699 (744)
|||+- |..+...++|. ..+++||+. .+|+.-+..++ + .++++....+..+.++||
T Consensus 364 ATNRD--L~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGN 441 (550)
T COG3604 364 ATNRD--LEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGN 441 (550)
T ss_pred ccchh--HHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCc
Confidence 99985 44333334443 457889988 66666655542 2 456666677777778999
Q ss_pred HHHHHHHHHHHHhcc
Q 004584 700 IKKLYMLIEMAAQGE 714 (744)
Q Consensus 700 ir~l~~~l~~a~~~a 714 (744)
+|++.+++++|+..+
T Consensus 442 VRELen~veRavlla 456 (550)
T COG3604 442 VRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999976
No 214
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.35 E-value=1.7e-11 Score=134.05 Aligned_cols=181 Identities=21% Similarity=0.304 Sum_probs=115.3
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhh-HhhHHHHHHHHH----hcCCCeEEEEeccchhh
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHEST-KCAQIVKVFEDA----YKSPLSIIILDDIERLL 607 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~-~~~~i~~if~~a----~~~~~~il~iDEid~l~ 607 (744)
+..++||+||||||||++|+++|..++.+|+.+++....-..+.+. ....+..++..+ .+..++||||||||++.
T Consensus 107 ~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~ 186 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIA 186 (412)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhc
Confidence 4578999999999999999999999999999997765321111111 112234443322 23567999999999998
Q ss_pred ccCC---CCcch-hHHHHHHHHHHhccC----CCCC------CcEEEEEeCCCCC-------------------------
Q 004584 608 EYVP---IGPRF-SNIISQTMLVLLKRL----PPKG------KKLLVIGTTSEVS------------------------- 648 (744)
Q Consensus 608 ~~~~---~g~~~-~~~~~~~Ll~~l~~~----~~~~------~~v~vi~~tn~~~------------------------- 648 (744)
.... .+..+ +..++++||.+|++. ++.+ ...++|.|+|-.-
T Consensus 187 ~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~ 266 (412)
T PRK05342 187 RKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFG 266 (412)
T ss_pred cccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCc
Confidence 6521 12223 246899999999753 2111 1234555544300
Q ss_pred -----------------CCC---------ccccccccceEEEcCCCCHHHHHHHHHH----c-----------c---CCC
Q 004584 649 -----------------FLD---------SVGICDAFSVTYHVPTLKTDDAKKVLKQ----L-----------N---VFA 684 (744)
Q Consensus 649 -----------------~l~---------~~~l~~rf~~~i~~p~~~~~~~~~Il~~----~-----------~---~~~ 684 (744)
.+. ...+.+|++.++.|.+++.+++.+|+.. . + .++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t 346 (412)
T PRK05342 267 AEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFT 346 (412)
T ss_pred cccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEC
Confidence 000 0134589999999999999999999972 0 0 345
Q ss_pred HHHHHHHHHhC-C-CCcHHHHHHHHHHHHhc
Q 004584 685 EEDVDSASEAL-N-DMPIKKLYMLIEMAAQG 713 (744)
Q Consensus 685 ~~~~~~~~~~~-~-~g~ir~l~~~l~~a~~~ 713 (744)
++-+..++... . ...+|.+..+++.....
T Consensus 347 ~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~ 377 (412)
T PRK05342 347 DEALEAIAKKAIERKTGARGLRSILEEILLD 377 (412)
T ss_pred HHHHHHHHHhCCCCCCCCchHHHHHHHHhHH
Confidence 55555555542 2 67777777776655443
No 215
>PRK05642 DNA replication initiation factor; Validated
Probab=99.35 E-value=3.2e-11 Score=123.01 Aligned_cols=197 Identities=15% Similarity=0.192 Sum_probs=122.9
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEeccc
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGP 289 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~ 289 (744)
+..+|++.-.| -..+..+.++++.+.. +-.+..+++||||+|||||+|++++++++. +..+.+++..
T Consensus 14 ~~~tfdnF~~~-~~~~a~~~~~~~~~~~----------~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~ 82 (234)
T PRK05642 14 DDATFANYYPG-ANAAALGYVERLCEAD----------AGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA 82 (234)
T ss_pred CcccccccCcC-ChHHHHHHHHHHhhcc----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH
Confidence 67788886334 3433333324332211 112235799999999999999999998763 3456667776
Q ss_pred chhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEE
Q 004584 290 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVL 369 (744)
Q Consensus 290 ~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~ 369 (744)
++.... ..+.+.... ..+|+|||++.+..+.. ... .|...++.....+..+
T Consensus 83 ~~~~~~--------~~~~~~~~~----------~d~LiiDDi~~~~~~~~--------~~~---~Lf~l~n~~~~~g~~i 133 (234)
T PRK05642 83 ELLDRG--------PELLDNLEQ----------YELVCLDDLDVIAGKAD--------WEE---ALFHLFNRLRDSGRRL 133 (234)
T ss_pred HHHhhh--------HHHHHhhhh----------CCEEEEechhhhcCChH--------HHH---HHHHHHHHHHhcCCEE
Confidence 665421 122222221 23999999998753211 122 2333333333445667
Q ss_pred EEEEeCCCCcc---chhhcCCCcc--ceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHH
Q 004584 370 LIGMTNRKDML---DEALLRPGRL--EVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEG 444 (744)
Q Consensus 370 vI~~tn~~~~i---d~al~r~gRf--~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~ 444 (744)
+|+++..|..+ .|.+++ || ...+.+..|+.+++.++++..+.... ...++..++.+++...+ +.+.+..
T Consensus 134 lits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~---~~l~~ev~~~L~~~~~~-d~r~l~~ 207 (234)
T PRK05642 134 LLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRG---LHLTDEVGHFILTRGTR-SMSALFD 207 (234)
T ss_pred EEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhcCC-CHHHHHH
Confidence 77777666443 688988 77 46778899999999999996654432 12345567888888875 8888888
Q ss_pred HHHHHHHHHH
Q 004584 445 VAKSAVSFAL 454 (744)
Q Consensus 445 l~~~A~~~a~ 454 (744)
+++.-...++
T Consensus 208 ~l~~l~~~~l 217 (234)
T PRK05642 208 LLERLDQASL 217 (234)
T ss_pred HHHHHHHHHH
Confidence 7776654444
No 216
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.35 E-value=5e-11 Score=118.42 Aligned_cols=165 Identities=16% Similarity=0.298 Sum_probs=114.2
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE--eccc
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI--VNGP 289 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~--v~~~ 289 (744)
+.+.+++ +.|++.|++.+++.. ... +.-.+..++||||++|||||++++++..++....+.. +...
T Consensus 22 ~~~~l~~--L~Gie~Qk~~l~~Nt-~~F---------l~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~ 89 (249)
T PF05673_consen 22 DPIRLDD--LIGIERQKEALIENT-EQF---------LQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKE 89 (249)
T ss_pred CCCCHHH--hcCHHHHHHHHHHHH-HHH---------HcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHH
Confidence 5677888 999999999995433 211 1224678999999999999999999999986544443 3333
Q ss_pred chhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCc--cCCCc
Q 004584 290 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV--ESLNN 367 (744)
Q Consensus 290 ~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~--~~~~~ 367 (744)
++ ..+.++++..... | ...|||+||+.- +..+.-...|-..+||- ....|
T Consensus 90 ~L---------~~l~~l~~~l~~~-~------~kFIlf~DDLsF------------e~~d~~yk~LKs~LeGgle~~P~N 141 (249)
T PF05673_consen 90 DL---------GDLPELLDLLRDR-P------YKFILFCDDLSF------------EEGDTEYKALKSVLEGGLEARPDN 141 (249)
T ss_pred Hh---------ccHHHHHHHHhcC-C------CCEEEEecCCCC------------CCCcHHHHHHHHHhcCccccCCCc
Confidence 32 2344555554432 1 146999998652 12233445666667763 34568
Q ss_pred EEEEEEeCCCCccchhhcC---------------------CCccceEEEEcCCCHHHHHHHHHHHHhccc
Q 004584 368 VLLIGMTNRKDMLDEALLR---------------------PGRLEVQVEISLPDENGRLQILQIHTNKMK 416 (744)
Q Consensus 368 v~vI~~tn~~~~id~al~r---------------------~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~ 416 (744)
|++.+|+|+...+++.+.. ..||...|.|..|+.++-++|++.++++..
T Consensus 142 vliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g 211 (249)
T PF05673_consen 142 VLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYG 211 (249)
T ss_pred EEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcC
Confidence 9999999997655332211 239999999999999999999999987654
No 217
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.35 E-value=3e-11 Score=133.47 Aligned_cols=200 Identities=13% Similarity=0.196 Sum_probs=141.4
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhh----------cCCCEEEEcccccc-------------cccc--hhhHhhHHHHH
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGID----------SDFPFVKIISAESM-------------IGLH--ESTKCAQIVKV 586 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~----------~~~~~i~v~~~~~~-------------~g~~--~~~~~~~i~~i 586 (744)
.....+++.|-||||||+.+..+-.. ..+.|+.+++..+- -|.. .....+.+..-
T Consensus 420 ~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~ 499 (767)
T KOG1514|consen 420 GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFR 499 (767)
T ss_pred CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHh
Confidence 34458999999999999988877652 35788988776531 1111 11123445555
Q ss_pred HHHH-hcCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccc---cccccc-e
Q 004584 587 FEDA-YKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVG---ICDAFS-V 661 (744)
Q Consensus 587 f~~a-~~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~---l~~rf~-~ 661 (744)
|.-. .+..++||+|||.|.|. +.-+..|..++++....+.+++|||..|.+++..... ..+|.. .
T Consensus 500 f~~~k~~~~~~VvLiDElD~Lv----------tr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~t 569 (767)
T KOG1514|consen 500 FTVPKPKRSTTVVLIDELDILV----------TRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLT 569 (767)
T ss_pred hccCCCCCCCEEEEeccHHHHh----------cccHHHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhccce
Confidence 5521 24567999999999997 3346678888899877788999999999988765532 235554 6
Q ss_pred EEEcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHh-CC--CCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhH
Q 004584 662 TYHVPTLKTDDAKKVLKQL----NVFAEEDVDSASEA-LN--DMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHF 734 (744)
Q Consensus 662 ~i~~p~~~~~~~~~Il~~~----~~~~~~~~~~~~~~-~~--~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~ 734 (744)
++.|.||+..|+++|+... ..|. .++.+++++ .+ .|++|++++++++|++.+..+..-........|++-|+
T Consensus 570 Ri~F~pYth~qLq~Ii~~RL~~~~~f~-~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v 648 (767)
T KOG1514|consen 570 RICFQPYTHEQLQEIISARLKGLDAFE-NKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHV 648 (767)
T ss_pred eeecCCCCHHHHHHHHHHhhcchhhcc-hhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHH
Confidence 7999999999999999863 2333 344444443 33 99999999999999999875422122334577999999
Q ss_pred HHHHHHHh
Q 004584 735 YDCLQDMV 742 (744)
Q Consensus 735 ~~al~~~~ 742 (744)
.+|++++.
T Consensus 649 ~~Ai~em~ 656 (767)
T KOG1514|consen 649 MEAINEML 656 (767)
T ss_pred HHHHHHHh
Confidence 99999764
No 218
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=1.8e-11 Score=138.09 Aligned_cols=190 Identities=18% Similarity=0.192 Sum_probs=127.2
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCC----------
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME---------- 282 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~---------- 282 (744)
.-+|++ |.|.+..++.| .+++... +.+..+||+||||||||++|+.+|+.+.+..
T Consensus 12 P~sf~d--IiGQe~v~~~L-~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C 76 (624)
T PRK14959 12 PQTFAE--VAGQETVKAIL-SRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC 76 (624)
T ss_pred CCCHHH--hcCCHHHHHHH-HHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc
Confidence 457888 88998887766 6666532 1234799999999999999999999996531
Q ss_pred -------------cEEecccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHH
Q 004584 283 -------------PKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHD 349 (744)
Q Consensus 283 -------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~ 349 (744)
++.+++.. ...-..++.+.+.+.. .+..+ ...||||||+|.+. .
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~-~p~~g---~~kVIIIDEad~Lt-------------~ 133 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGY-APMEG---RYKVFIIDEAHMLT-------------R 133 (624)
T ss_pred HHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHh-hhhcC---CceEEEEEChHhCC-------------H
Confidence 11121110 1112334544333322 22212 24599999999884 2
Q ss_pred HHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHH
Q 004584 350 SIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQE 429 (744)
Q Consensus 350 ~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~ 429 (744)
...+.|+..|+. ...++++|++|+.++.+.+.+++ |+. .++|+.++.++...+|+..+.+... -.++..++.
T Consensus 134 ~a~naLLk~LEE--P~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi---~id~eal~l 205 (624)
T PRK14959 134 EAFNALLKTLEE--PPARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGV---DYDPAAVRL 205 (624)
T ss_pred HHHHHHHHHhhc--cCCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHH
Confidence 346778888874 33578888899999899989988 764 6899999999999998876654331 134456778
Q ss_pred HHHhcCCCChHHHHHHHHHH
Q 004584 430 LAARTKNYSGAELEGVAKSA 449 (744)
Q Consensus 430 la~~t~g~sg~dl~~l~~~A 449 (744)
+++.+.| +.+++.++++.+
T Consensus 206 IA~~s~G-dlR~Al~lLeql 224 (624)
T PRK14959 206 IARRAAG-SVRDSMSLLGQV 224 (624)
T ss_pred HHHHcCC-CHHHHHHHHHHH
Confidence 8888775 555655555543
No 219
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.6e-11 Score=135.18 Aligned_cols=183 Identities=16% Similarity=0.268 Sum_probs=125.8
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccc------------cccccchhhH
Q 004584 512 HKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAE------------SMIGLHESTK 579 (744)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~------------~~~g~~~~~~ 579 (744)
.+.++++...++..-+-.+....+-++|+||||+|||++++.+|..++-.|.++.-.- .++|.-.+
T Consensus 416 m~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPG-- 493 (906)
T KOG2004|consen 416 MEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPG-- 493 (906)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCCh--
Confidence 3445555555554433344455677899999999999999999999999998873221 13444444
Q ss_pred hhHHHHHHHHHhcCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhcc------------CCCCCCcEEEEEeCCCC
Q 004584 580 CAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKR------------LPPKGKKLLVIGTTSEV 647 (744)
Q Consensus 580 ~~~i~~if~~a~~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~------------~~~~~~~v~vi~~tn~~ 647 (744)
.+-+.++...-.. -+++|||||++.... .|+ --.+||++|+- ++-...+|+||||.|..
T Consensus 494 --kiIq~LK~v~t~N-PliLiDEvDKlG~g~-qGD-----PasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~i 564 (906)
T KOG2004|consen 494 --KIIQCLKKVKTEN-PLILIDEVDKLGSGH-QGD-----PASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVI 564 (906)
T ss_pred --HHHHHHHhhCCCC-ceEEeehhhhhCCCC-CCC-----hHHHHHHhcChhhccchhhhccccccchhheEEEEecccc
Confidence 5666667765444 488999999996221 121 22345555542 22334589999999999
Q ss_pred CCCCccccccccceEEEcCCCCHHHHHHHHHHcc---------------CCCHHHHHHHHHhCC-CCcHHHHHHHH
Q 004584 648 SFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQLN---------------VFAEEDVDSASEALN-DMPIKKLYMLI 707 (744)
Q Consensus 648 ~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~~---------------~~~~~~~~~~~~~~~-~g~ir~l~~~l 707 (744)
+.+.+ .|+.|.. .|+++-|..+|-.+|.+++- ..++..+..++.+++ ..++|.|-.-+
T Consensus 565 dtIP~-pLlDRME-vIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~i 638 (906)
T KOG2004|consen 565 DTIPP-PLLDRME-VIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQI 638 (906)
T ss_pred ccCCh-hhhhhhh-eeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99987 6667776 89999999999999999741 445666778888887 56677664433
No 220
>PRK08727 hypothetical protein; Validated
Probab=99.35 E-value=4.5e-11 Score=121.86 Aligned_cols=189 Identities=17% Similarity=0.231 Sum_probs=114.5
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcC--CCcEEeccc
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG--MEPKIVNGP 289 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~--~~~~~v~~~ 289 (744)
+..+|++. ++|-...+..+ +.... | .....++|+||+|||||++++++++.+.. ....+++..
T Consensus 14 ~~~~f~~f-~~~~~n~~~~~-~~~~~------------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 14 SDQRFDSY-IAAPDGLLAQL-QALAA------------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred CcCChhhc-cCCcHHHHHHH-HHHHh------------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 56788886 56666555544 22111 1 12345999999999999999999888632 233444433
Q ss_pred chhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEE
Q 004584 290 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVL 369 (744)
Q Consensus 290 ~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~ 369 (744)
++. ..+.+.++.... ..+|+|||++.+..+.. ....+..+++.. ... +..
T Consensus 79 ~~~--------~~~~~~~~~l~~----------~dlLiIDDi~~l~~~~~--------~~~~lf~l~n~~---~~~-~~~ 128 (233)
T PRK08727 79 AAA--------GRLRDALEALEG----------RSLVALDGLESIAGQRE--------DEVALFDFHNRA---RAA-GIT 128 (233)
T ss_pred Hhh--------hhHHHHHHHHhc----------CCEEEEeCcccccCChH--------HHHHHHHHHHHH---HHc-CCe
Confidence 322 223344433322 34999999998753221 122223343332 222 333
Q ss_pred EEEEeC-CCCcc---chhhcCCCcc--ceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHH
Q 004584 370 LIGMTN-RKDML---DEALLRPGRL--EVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELE 443 (744)
Q Consensus 370 vI~~tn-~~~~i---d~al~r~gRf--~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~ 443 (744)
+|.++| .|..+ ++.+++ || ...+.++.|+.+++.+|++.++.... ...++..++.|++.+.| ..+.+.
T Consensus 129 vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~---l~l~~e~~~~La~~~~r-d~r~~l 202 (233)
T PRK08727 129 LLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRG---LALDEAAIDWLLTHGER-ELAGLV 202 (233)
T ss_pred EEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhCCC-CHHHHH
Confidence 555554 55544 799998 76 56789999999999999998765422 12455568888888774 555555
Q ss_pred HHHHHHHH
Q 004584 444 GVAKSAVS 451 (744)
Q Consensus 444 ~l~~~A~~ 451 (744)
++++....
T Consensus 203 ~~L~~l~~ 210 (233)
T PRK08727 203 ALLDRLDR 210 (233)
T ss_pred HHHHHHHH
Confidence 55665443
No 221
>PLN03025 replication factor C subunit; Provisional
Probab=99.35 E-value=3.2e-11 Score=129.22 Aligned_cols=190 Identities=17% Similarity=0.141 Sum_probs=120.9
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCC----CcEEecc
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGM----EPKIVNG 288 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~----~~~~v~~ 288 (744)
+-+|++ +.|.++.++.+ +.++... ...++|||||||||||++|+++|+++.+. .+..++.
T Consensus 9 P~~l~~--~~g~~~~~~~L-~~~~~~~-------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 9 PTKLDD--IVGNEDAVSRL-QVIARDG-------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHhcC-------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 446777 88998888877 6554322 12369999999999999999999998443 2334444
Q ss_pred cchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcE
Q 004584 289 PEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNV 368 (744)
Q Consensus 289 ~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v 368 (744)
++..+ ...+++..+........ .....+.|++|||+|.+... ..+.|+..|+.. ....
T Consensus 73 sd~~~------~~~vr~~i~~~~~~~~~-~~~~~~kviiiDE~d~lt~~-------------aq~aL~~~lE~~--~~~t 130 (319)
T PLN03025 73 SDDRG------IDVVRNKIKMFAQKKVT-LPPGRHKIVILDEADSMTSG-------------AQQALRRTMEIY--SNTT 130 (319)
T ss_pred ccccc------HHHHHHHHHHHHhcccc-CCCCCeEEEEEechhhcCHH-------------HHHHHHHHHhcc--cCCc
Confidence 43211 12344433322211100 00123569999999998521 234455555532 2345
Q ss_pred EEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHH
Q 004584 369 LLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAK 447 (744)
Q Consensus 369 ~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~ 447 (744)
.+|.++|.++.+.+++++ |+. .++|+.|+.++....++..+++... ..++..+..++..+.| ..+.+.+.++
T Consensus 131 ~~il~~n~~~~i~~~L~S--Rc~-~i~f~~l~~~~l~~~L~~i~~~egi---~i~~~~l~~i~~~~~g-DlR~aln~Lq 202 (319)
T PLN03025 131 RFALACNTSSKIIEPIQS--RCA-IVRFSRLSDQEILGRLMKVVEAEKV---PYVPEGLEAIIFTADG-DMRQALNNLQ 202 (319)
T ss_pred eEEEEeCCccccchhHHH--hhh-cccCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 577788888899999998 764 7899999999999999887765331 2244567888887765 4455555554
No 222
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=3.9e-11 Score=134.27 Aligned_cols=180 Identities=18% Similarity=0.240 Sum_probs=117.7
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhcCC-------CEEE------Ecc---cccc-cccchhhHhhHHHHHHHHHh----c
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDSDF-------PFVK------IIS---AESM-IGLHESTKCAQIVKVFEDAY----K 592 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~~~-------~~i~------v~~---~~~~-~g~~~~~~~~~i~~if~~a~----~ 592 (744)
+..+||+||+|+|||++|+.+|...++ ++-. +.. ++.+ +..........++.+.+.+. .
T Consensus 38 ~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~ 117 (486)
T PRK14953 38 SHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIK 117 (486)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCccc
Confidence 344689999999999999999987542 1100 000 0110 00001122345666665553 2
Q ss_pred CCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCCCCHHH
Q 004584 593 SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDD 672 (744)
Q Consensus 593 ~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~~~~~ 672 (744)
+.+.|++|||+|.|. ...+++|+..++..++ ..++|++ |+.++.+.+ .+.+|+ ..++|++++.++
T Consensus 118 ~~~KVvIIDEad~Lt----------~~a~naLLk~LEepp~--~~v~Il~-tt~~~kl~~-tI~SRc-~~i~f~~ls~~e 182 (486)
T PRK14953 118 GKYKVYIIDEAHMLT----------KEAFNALLKTLEEPPP--RTIFILC-TTEYDKIPP-TILSRC-QRFIFSKPTKEQ 182 (486)
T ss_pred CCeeEEEEEChhhcC----------HHHHHHHHHHHhcCCC--CeEEEEE-ECCHHHHHH-HHHHhc-eEEEcCCCCHHH
Confidence 456799999999874 4456778888877533 3445554 455554444 345565 489999999998
Q ss_pred HHHHHHH----ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHH
Q 004584 673 AKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 739 (744)
Q Consensus 673 ~~~Il~~----~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~ 739 (744)
+...+++ .+...+++....+...++|++|.+++.++.+...+ ...||.+++.+++.
T Consensus 183 l~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~~~-----------~~~It~~~V~~~lg 242 (486)
T PRK14953 183 IKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYG-----------EGKVTIKVVEEFLG 242 (486)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------CCCcCHHHHHHHhC
Confidence 8887775 34455667777888889999999999999887542 23588888877653
No 223
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=2.7e-11 Score=135.55 Aligned_cols=199 Identities=21% Similarity=0.256 Sum_probs=132.6
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE-------
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI------- 285 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~------- 285 (744)
+-.|++ +.|.+..++.+ +.++... +.++.+|||||+|+|||++|+.+|+.+++.....
T Consensus 12 P~~f~d--iiGq~~i~~~L-~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 12 PKFFKE--VIGQEIVVRIL-KNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred CCcHHH--ccChHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 446888 89999998877 6666432 2234689999999999999999999986421100
Q ss_pred ecccchhc----------ccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHH
Q 004584 286 VNGPEVLS----------KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (744)
Q Consensus 286 v~~~~l~~----------~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~L 355 (744)
.+|..+.. .........++.+.+.+.. .|.. +...|++|||+|.+. ....+.|
T Consensus 77 ~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~-~P~~---~~~KVvIIDEad~Lt-------------~~a~naL 139 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSY-TPIK---GKYKVYIIDEAHMLT-------------KEAFNAL 139 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHh-Cccc---CCeeEEEEEChhhcC-------------HHHHHHH
Confidence 11111111 0011223346666555543 2332 235699999999874 2345667
Q ss_pred HHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcC
Q 004584 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (744)
Q Consensus 356 L~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~ 435 (744)
+..++. +...+++|.+|+.++.+.+++++ |+. .+.|++|+.++...+++.+++.... ..++..+..++..+.
T Consensus 140 Lk~LEe--pp~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi---~id~~al~~La~~s~ 211 (486)
T PRK14953 140 LKTLEE--PPPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKI---EYEEKALDLLAQASE 211 (486)
T ss_pred HHHHhc--CCCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcC
Confidence 777774 34456777777888889999988 665 6899999999999999988775441 123445777888877
Q ss_pred CCChHHHHHHHHHHHHH
Q 004584 436 NYSGAELEGVAKSAVSF 452 (744)
Q Consensus 436 g~sg~dl~~l~~~A~~~ 452 (744)
| +.+++.++++.+..+
T Consensus 212 G-~lr~al~~Ldkl~~~ 227 (486)
T PRK14953 212 G-GMRDAASLLDQASTY 227 (486)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 5 677777777776643
No 224
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.33 E-value=9.5e-11 Score=136.77 Aligned_cols=150 Identities=19% Similarity=0.238 Sum_probs=100.0
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhcCCCEEEEccccc-----ccccchhhH---hhHHHHHHHHHhcCCCeEEEEeccc
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES-----MIGLHESTK---CAQIVKVFEDAYKSPLSIIILDDIE 604 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~-----~~g~~~~~~---~~~i~~if~~a~~~~~~il~iDEid 604 (744)
..-.+|+.||+-+|||++...+|.+.+..||+++..+. ++|.+.... ..--..++-.|-+.. -.|++||..
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELN 965 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELN 965 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccc
Confidence 34568999999999999999999999999999987765 355332110 001112333333333 589999997
Q ss_pred hhhccCCCCcchhHHHHHHHHHHhccC-----CC------CCCcEEEEEeCCCCCCCCc-----cccccccceEEEcCCC
Q 004584 605 RLLEYVPIGPRFSNIISQTMLVLLKRL-----PP------KGKKLLVIGTTSEVSFLDS-----VGICDAFSVTYHVPTL 668 (744)
Q Consensus 605 ~l~~~~~~g~~~~~~~~~~Ll~~l~~~-----~~------~~~~v~vi~~tn~~~~l~~-----~~l~~rf~~~i~~p~~ 668 (744)
-.. ..++.+|..+|+.- |+ .....+++||.|.|....- ..+|.||- .++|...
T Consensus 966 LAp----------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFl-E~hFddi 1034 (4600)
T COG5271 966 LAP----------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFL-EMHFDDI 1034 (4600)
T ss_pred cCc----------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhH-hhhcccC
Confidence 532 45677777777651 11 1235778888898865432 14567776 5788888
Q ss_pred CHHHHHHHHHHccCCCHHHHHHHHHh
Q 004584 669 KTDDAKKVLKQLNVFAEEDVDSASEA 694 (744)
Q Consensus 669 ~~~~~~~Il~~~~~~~~~~~~~~~~~ 694 (744)
..+++..||+......+.-...++.-
T Consensus 1035 pedEle~ILh~rc~iapSyakKiVeV 1060 (4600)
T COG5271 1035 PEDELEEILHGRCEIAPSYAKKIVEV 1060 (4600)
T ss_pred cHHHHHHHHhccCccCHHHHHHHHHH
Confidence 89999999998665555544444433
No 225
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=5.5e-11 Score=135.64 Aligned_cols=182 Identities=15% Similarity=0.172 Sum_probs=124.3
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEc-c--------------------ccccc-ccchhhHhhHHHHHHHH
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKII-S--------------------AESMI-GLHESTKCAQIVKVFED 589 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~-~--------------------~~~~~-g~~~~~~~~~i~~if~~ 589 (744)
..+..+||+||+|+|||++|+++|+...+...... + ++.+. ..........|+++.+.
T Consensus 44 ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~ 123 (598)
T PRK09111 44 RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIES 123 (598)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHH
Confidence 34567999999999999999999987654321110 0 11100 00011234578888877
Q ss_pred Hhc----CCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEc
Q 004584 590 AYK----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHV 665 (744)
Q Consensus 590 a~~----~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~ 665 (744)
+.. +...|+||||+|.|. ....+.|+..|+..++ .+.+|.+|+..+.+-+ .+++|. ..++|
T Consensus 124 ~~~~P~~a~~KVvIIDEad~Ls----------~~a~naLLKtLEePp~---~~~fIl~tte~~kll~-tI~SRc-q~~~f 188 (598)
T PRK09111 124 VRYRPVSARYKVYIIDEVHMLS----------TAAFNALLKTLEEPPP---HVKFIFATTEIRKVPV-TVLSRC-QRFDL 188 (598)
T ss_pred HHhchhcCCcEEEEEEChHhCC----------HHHHHHHHHHHHhCCC---CeEEEEEeCChhhhhH-HHHhhe-eEEEe
Confidence 753 346899999999984 4567788888887643 3444445555554444 355665 68999
Q ss_pred CCCCHHHHHHHHHH----ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHH
Q 004584 666 PTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 739 (744)
Q Consensus 666 p~~~~~~~~~Il~~----~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~ 739 (744)
++++.+++...+++ .+...+++...++...++|++|.+++.++.+.... ...||.+++.+.+.
T Consensus 189 ~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli~~g-----------~g~It~e~V~~llg 255 (598)
T PRK09111 189 RRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHG-----------AGEVTAEAVRDMLG 255 (598)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhc-----------CCCcCHHHHHHHhC
Confidence 99999888877776 34556667777888889999999999998775442 23588888887654
No 226
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.33 E-value=2.8e-11 Score=131.38 Aligned_cols=229 Identities=22% Similarity=0.319 Sum_probs=138.0
Q ss_pred cCchHHHHHHHHHHHHhc---cCCC-hhHHhHhCC-CCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhc-c
Q 004584 221 IGGLSAEFADIFRRAFAS---RVFP-PHVTSKLGI-KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS-K 294 (744)
Q Consensus 221 igGl~~~~~~i~~~~~~~---~~~~-~~~~~~~g~-~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~-~ 294 (744)
|.|+++.++.+ ..++.. .+.. +..-..-++ ....++||+||||||||++|+++|+.++ .++..+++..+.. .
T Consensus 79 ViGQe~A~~~l-~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~-~pf~~~da~~L~~~g 156 (413)
T TIGR00382 79 VIGQEQAKKVL-SVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN-VPFAIADATTLTEAG 156 (413)
T ss_pred ecCHHHHHHHH-HHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC-CCeEEechhhccccc
Confidence 89999999887 444311 1100 000000011 1235899999999999999999999984 6677777777653 5
Q ss_pred cccch-HHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCcc-HHHHHHHHHHhccCcc---------
Q 004584 295 FVGET-EKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGV-HDSIVNQLLTKIDGVE--------- 363 (744)
Q Consensus 295 ~~g~~-~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~-~~~~~~~LL~~~d~~~--------- 363 (744)
|+|+. +..+..++..+.... ....++||||||+|.+.+++...+....+ ...+.+.||..|+|..
T Consensus 157 yvG~d~e~~L~~~~~~~~~~l----~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr 232 (413)
T TIGR00382 157 YVGEDVENILLKLLQAADYDV----EKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGR 232 (413)
T ss_pred cccccHHHHHHHHHHhCcccH----HhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCc
Confidence 78875 333444443221100 01135699999999998765432211111 1246677777776532
Q ss_pred --CCCcEEEEEEeCCC---------------------------C-----------------------ccchhhcCCCccc
Q 004584 364 --SLNNVLLIGMTNRK---------------------------D-----------------------MLDEALLRPGRLE 391 (744)
Q Consensus 364 --~~~~v~vI~~tn~~---------------------------~-----------------------~id~al~r~gRf~ 391 (744)
+..+.++|.|+|-. + .+.|+|+. |++
T Consensus 233 ~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld 310 (413)
T TIGR00382 233 KHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLP 310 (413)
T ss_pred cccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCC
Confidence 12345666666650 0 02466654 999
Q ss_pred eEEEEcCCCHHHHHHHHHHH----Hhcccc----cC-CC-CCcccHHHHHHh--cCCCChHHHHHHHHHHHHHHHHhc
Q 004584 392 VQVEISLPDENGRLQILQIH----TNKMKE----NS-FL-APDVNLQELAAR--TKNYSGAELEGVAKSAVSFALNRQ 457 (744)
Q Consensus 392 ~~i~i~~Pd~~~r~~Il~~~----~~~~~~----~~-~~-~~~~~l~~la~~--t~g~sg~dl~~l~~~A~~~a~~r~ 457 (744)
..+.|.+.+.++..+|+... .+.+.. .+ .+ .++..++.+++. ...+-.+.|.++++......+...
T Consensus 311 ~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~ 388 (413)
T TIGR00382 311 VIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDL 388 (413)
T ss_pred eEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhC
Confidence 99999999999999999763 222211 00 01 133346777775 345667888888888877666544
No 227
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=4.3e-11 Score=130.20 Aligned_cols=174 Identities=15% Similarity=0.199 Sum_probs=112.7
Q ss_pred hhhHHHHHHHHHHHHH----hcCCCCceeeeeecCCCCChhHHHHHHHhhcCCC----------------------EEEE
Q 004584 512 HKHIYQRAMLLVEQVK----VSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFP----------------------FVKI 565 (744)
Q Consensus 512 ~~~~~~~~~~~~~~~~----~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~----------------------~i~v 565 (744)
.+++++.+...+..-+ ..+...+..+||+||||+|||++|+++|....+. -+.+
T Consensus 10 q~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~ 89 (394)
T PRK07940 10 QEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRV 89 (394)
T ss_pred hHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEE
Confidence 3455555555444322 1122356779999999999999999999754332 1111
Q ss_pred cccccccccchhhHhhHHHHHHHHHhc----CCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEE
Q 004584 566 ISAESMIGLHESTKCAQIVKVFEDAYK----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVI 641 (744)
Q Consensus 566 ~~~~~~~g~~~~~~~~~i~~if~~a~~----~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi 641 (744)
..++ | ..-+...++++++.++. +...|+||||+|++. ....++|+..|+..+ ...++|+
T Consensus 90 i~~~---~--~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~----------~~aanaLLk~LEep~--~~~~fIL 152 (394)
T PRK07940 90 VAPE---G--LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT----------ERAANALLKAVEEPP--PRTVWLL 152 (394)
T ss_pred eccc---c--ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC----------HHHHHHHHHHhhcCC--CCCeEEE
Confidence 1221 1 11234568888888754 345799999999984 445677888887753 3356666
Q ss_pred EeCCCCCCCCccccccccceEEEcCCCCHHHHHHHHHHccCCCHHHHHHHHHhCCCCcHHHHHHH
Q 004584 642 GTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQLNVFAEEDVDSASEALNDMPIKKLYML 706 (744)
Q Consensus 642 ~~tn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~~~~~~~~~~~~~~~~~~g~ir~l~~~ 706 (744)
+|++ ++.+.+ .+++|+ ..++|++|+.+++.+.|.+..+..++ ....+...++|+++.++.+
T Consensus 153 ~a~~-~~~llp-TIrSRc-~~i~f~~~~~~~i~~~L~~~~~~~~~-~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 153 CAPS-PEDVLP-TIRSRC-RHVALRTPSVEAVAEVLVRRDGVDPE-TARRAARASQGHIGRARRL 213 (394)
T ss_pred EECC-hHHChH-HHHhhC-eEEECCCCCHHHHHHHHHHhcCCCHH-HHHHHHHHcCCCHHHHHHH
Confidence 6666 666665 455664 69999999999999999754344544 4455677778877766544
No 228
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=5.6e-11 Score=135.01 Aligned_cols=173 Identities=18% Similarity=0.258 Sum_probs=120.7
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhcCCC------------------------EEEEcccccccccchhhHhhHHHHHHH
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDSDFP------------------------FVKIISAESMIGLHESTKCAQIVKVFE 588 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~~~~------------------------~i~v~~~~~~~g~~~~~~~~~i~~if~ 588 (744)
.+..+||+||+|+|||++|+++|+...+. ++.+++.. ....+.++++.+
T Consensus 37 i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas-------~~~vddIr~l~e 109 (563)
T PRK06647 37 IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGAS-------NTSVQDVRQIKE 109 (563)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcc-------cCCHHHHHHHHH
Confidence 44568999999999999999999876431 22221111 123345666665
Q ss_pred HHh----cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEE
Q 004584 589 DAY----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYH 664 (744)
Q Consensus 589 ~a~----~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~ 664 (744)
.+. .+...|++|||+|.|. ...+++|+..++..++ .+++|.+|+.+..+.+ .+++|+. .++
T Consensus 110 ~~~~~p~~~~~KVvIIDEa~~Ls----------~~a~naLLK~LEepp~---~~vfI~~tte~~kL~~-tI~SRc~-~~~ 174 (563)
T PRK06647 110 EIMFPPASSRYRVYIIDEVHMLS----------NSAFNALLKTIEEPPP---YIVFIFATTEVHKLPA-TIKSRCQ-HFN 174 (563)
T ss_pred HHHhchhcCCCEEEEEEChhhcC----------HHHHHHHHHhhccCCC---CEEEEEecCChHHhHH-HHHHhce-EEE
Confidence 443 3566899999999984 5567788888876543 5566666666665554 4556655 789
Q ss_pred cCCCCHHHHHHHHHHc----cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHH
Q 004584 665 VPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCL 738 (744)
Q Consensus 665 ~p~~~~~~~~~Il~~~----~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al 738 (744)
|.+++.+++...+++. +...+++...++...++|++|.+++.++.+..... ..||.+++.+++
T Consensus 175 f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdklis~~~-----------~~It~e~V~~ll 241 (563)
T PRK06647 175 FRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSD-----------SDITLEQIRSKM 241 (563)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcC-----------CCCCHHHHHHHh
Confidence 9999999988777753 44556777777888899999999999987765421 347777776654
No 229
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=4e-11 Score=132.02 Aligned_cols=178 Identities=15% Similarity=0.196 Sum_probs=117.6
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhcCCC--------------------------------EEEEcccccccccchhhHh
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDSDFP--------------------------------FVKIISAESMIGLHESTKC 580 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~~~~--------------------------------~i~v~~~~~~~g~~~~~~~ 580 (744)
.+..+||+||||+|||++|+++|+...+. ++.+++. .....
T Consensus 37 ~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~-------~~~~i 109 (397)
T PRK14955 37 VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAA-------SNNSV 109 (397)
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeeccc-------ccCCH
Confidence 34558999999999999999999876542 1111110 11123
Q ss_pred hHHHHHHHHHh----cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccc
Q 004584 581 AQIVKVFEDAY----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGIC 656 (744)
Q Consensus 581 ~~i~~if~~a~----~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~ 656 (744)
+.++++.+.+. .+...|+||||+|.+. ...++.|+..++..++ ..++|.+|+.+..+-+ .++
T Consensus 110 d~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~----------~~~~~~LLk~LEep~~---~t~~Il~t~~~~kl~~-tl~ 175 (397)
T PRK14955 110 DDIRLLRENVRYGPQKGRYRVYIIDEVHMLS----------IAAFNAFLKTLEEPPP---HAIFIFATTELHKIPA-TIA 175 (397)
T ss_pred HHHHHHHHHHhhchhcCCeEEEEEeChhhCC----------HHHHHHHHHHHhcCCC---CeEEEEEeCChHHhHH-HHH
Confidence 45666665553 2345799999999984 3456677777776533 3344444455444433 344
Q ss_pred cccceEEEcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchh
Q 004584 657 DAFSVTYHVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKIS 732 (744)
Q Consensus 657 ~rf~~~i~~p~~~~~~~~~Il~~~----~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e 732 (744)
+|. ..++|++++.+++...++.. +...+++....+...++|++|.+++.++.+...+... .+...||.+
T Consensus 176 sR~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~~~~~~~------~~~~~It~~ 248 (397)
T PRK14955 176 SRC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFSVES------EGEGSIRYD 248 (397)
T ss_pred HHH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc------CCCCccCHH
Confidence 454 48999999999888777763 4446667777788888999999999999876553210 123568888
Q ss_pred hHHHHH
Q 004584 733 HFYDCL 738 (744)
Q Consensus 733 ~~~~al 738 (744)
++.+.+
T Consensus 249 ~v~~~v 254 (397)
T PRK14955 249 KVAELL 254 (397)
T ss_pred HHHHHH
Confidence 887654
No 230
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.32 E-value=5.9e-11 Score=127.29 Aligned_cols=159 Identities=18% Similarity=0.245 Sum_probs=104.9
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchh
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL 292 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~ 292 (744)
+-+|++ +.|.++..+.+ ..++... ..+..+||+||||+|||++++++++.++ ..+..+++.+
T Consensus 17 P~~~~~--~~~~~~~~~~l-~~~~~~~------------~~~~~lll~G~~G~GKT~la~~l~~~~~-~~~~~i~~~~-- 78 (316)
T PHA02544 17 PSTIDE--CILPAADKETF-KSIVKKG------------RIPNMLLHSPSPGTGKTTVAKALCNEVG-AEVLFVNGSD-- 78 (316)
T ss_pred CCcHHH--hcCcHHHHHHH-HHHHhcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhC-ccceEeccCc--
Confidence 357888 89999888877 5555321 2344567799999999999999999984 5566777765
Q ss_pred cccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEE
Q 004584 293 SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIG 372 (744)
Q Consensus 293 ~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~ 372 (744)
.. . ..+++.........+. ...+.+|+|||+|.+.. ...... |...++.. ..++.+|.
T Consensus 79 ~~-~----~~i~~~l~~~~~~~~~---~~~~~vliiDe~d~l~~---------~~~~~~---L~~~le~~--~~~~~~Il 136 (316)
T PHA02544 79 CR-I----DFVRNRLTRFASTVSL---TGGGKVIIIDEFDRLGL---------ADAQRH---LRSFMEAY--SKNCSFII 136 (316)
T ss_pred cc-H----HHHHHHHHHHHHhhcc---cCCCeEEEEECcccccC---------HHHHHH---HHHHHHhc--CCCceEEE
Confidence 11 1 2222222221111111 12356999999998721 112223 33334432 24678888
Q ss_pred EeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhc
Q 004584 373 MTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNK 414 (744)
Q Consensus 373 ~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~ 414 (744)
++|.++.+++++++ ||. .+.++.|+.+++.++++...+.
T Consensus 137 t~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~ 175 (316)
T PHA02544 137 TANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVR 175 (316)
T ss_pred EcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999998 885 7899999999999888765443
No 231
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=8.1e-11 Score=130.92 Aligned_cols=173 Identities=16% Similarity=0.159 Sum_probs=116.0
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhcCC-------------------------CEEEEcccccccccchhhHhhHHHHHH
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDSDF-------------------------PFVKIISAESMIGLHESTKCAQIVKVF 587 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~~~-------------------------~~i~v~~~~~~~g~~~~~~~~~i~~if 587 (744)
.+..+||+||||+|||++|+++|+.... +++.+++... ...+.++++-
T Consensus 38 i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~~-------~gid~ir~i~ 110 (451)
T PRK06305 38 AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGASH-------RGIEDIRQIN 110 (451)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeecccc-------CCHHHHHHHH
Confidence 4566899999999999999999976532 2333322111 1122344433
Q ss_pred HHH----hcCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEE
Q 004584 588 EDA----YKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTY 663 (744)
Q Consensus 588 ~~a----~~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i 663 (744)
+.+ ..+...|+||||+|.+. ...++.|+..|+..++ .+++|.+|+.+..+.+ .+++|+ ..+
T Consensus 111 ~~l~~~~~~~~~kvvIIdead~lt----------~~~~n~LLk~lEep~~---~~~~Il~t~~~~kl~~-tI~sRc-~~v 175 (451)
T PRK06305 111 ETVLFTPSKSRYKIYIIDEVHMLT----------KEAFNSLLKTLEEPPQ---HVKFFLATTEIHKIPG-TILSRC-QKM 175 (451)
T ss_pred HHHHhhhhcCCCEEEEEecHHhhC----------HHHHHHHHHHhhcCCC---CceEEEEeCChHhcch-HHHHhc-eEE
Confidence 332 23567899999999984 4457788888887532 4455556666655554 455565 479
Q ss_pred EcCCCCHHHHHHHHHH----ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHH
Q 004584 664 HVPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCL 738 (744)
Q Consensus 664 ~~p~~~~~~~~~Il~~----~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al 738 (744)
+|++++.+++...+.. .+...+++....+...++|++|.+++.++...... + ..|+.+++.+++
T Consensus 176 ~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~~~----------~-~~It~~~V~~l~ 243 (451)
T PRK06305 176 HLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLF----------P-KSLDPDSVAKAL 243 (451)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----------c-CCcCHHHHHHHH
Confidence 9999999998887775 34445667777777888999999999999765432 1 227776665543
No 232
>PRK08727 hypothetical protein; Validated
Probab=99.32 E-value=2.1e-11 Score=124.24 Aligned_cols=177 Identities=15% Similarity=0.160 Sum_probs=117.8
Q ss_pred eeeeeecCCCCChhHHHHHHHhhc---CCCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhhccCC
Q 004584 535 VTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVP 611 (744)
Q Consensus 535 ~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~~ 611 (744)
..++|+||+|||||+++.+++... +...+.+...+ ....+.+.++... ...+|+|||++.+...
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~---------~~~~~~~~~~~l~--~~dlLiIDDi~~l~~~-- 108 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA---------AAGRLRDALEALE--GRSLVALDGLESIAGQ-- 108 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH---------hhhhHHHHHHHHh--cCCEEEEeCcccccCC--
Confidence 459999999999999999997553 44334332211 1123444555543 3469999999988632
Q ss_pred CCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCc--ccccccc--ceEEEcCCCCHHHHHHHHHHc----cCC
Q 004584 612 IGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDS--VGICDAF--SVTYHVPTLKTDDAKKVLKQL----NVF 683 (744)
Q Consensus 612 ~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~--~~l~~rf--~~~i~~p~~~~~~~~~Il~~~----~~~ 683 (744)
...+..++.+++.....+ .-+|+.+...|..+.. ..+++|| ...+.|++|+.+++..|+++. +..
T Consensus 109 ------~~~~~~lf~l~n~~~~~~-~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~ 181 (233)
T PRK08727 109 ------REDEVALFDFHNRARAAG-ITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLA 181 (233)
T ss_pred ------hHHHHHHHHHHHHHHHcC-CeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 122344555555442222 2244434445555532 2667887 678999999999999999973 456
Q ss_pred CHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHH
Q 004584 684 AEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 739 (744)
Q Consensus 684 ~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~ 739 (744)
.+++....+....++++|.++++++.....+.. .+ ..||.+.+++++.
T Consensus 182 l~~e~~~~La~~~~rd~r~~l~~L~~l~~~~~~-------~~-~~it~~~~~~~l~ 229 (233)
T PRK08727 182 LDEAAIDWLLTHGERELAGLVALLDRLDRESLA-------AK-RRVTVPFLRRVLE 229 (233)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-------hC-CCCCHHHHHHHHh
Confidence 778888888888899999999999877643221 12 3699999998885
No 233
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=6e-11 Score=134.75 Aligned_cols=199 Identities=20% Similarity=0.244 Sum_probs=135.9
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCc------EE-
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEP------KI- 285 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~------~~- 285 (744)
+-+|++ |.|.+..++.+ +.++... +.++.+|||||||+|||++|+++|+.+.+... -.
T Consensus 12 P~~f~d--iiGqe~iv~~L-~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 12 PRDFNS--LEGQDFVVETL-KHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred CCCHHH--ccCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 456888 99999999988 6666432 22446999999999999999999999965310 00
Q ss_pred ecccchhc-------cccc---chHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHH
Q 004584 286 VNGPEVLS-------KFVG---ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (744)
Q Consensus 286 v~~~~l~~-------~~~g---~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~L 355 (744)
-+|..+.. .+.| ..-..++++.+.+... |.. +...|++|||+|.+. ....+.|
T Consensus 77 ~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~-p~~---~~~KVvIIDEa~~Ls-------------~~a~naL 139 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFP-PAS---SRYRVYIIDEVHMLS-------------NSAFNAL 139 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhc-hhc---CCCEEEEEEChhhcC-------------HHHHHHH
Confidence 00111000 1112 1234566666554432 221 234599999999873 3456778
Q ss_pred HHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcC
Q 004584 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (744)
Q Consensus 356 L~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~ 435 (744)
|..++. +...+++|++|+.+..+.+++++ |+. .++|..++.++..++++..+..... ..++..+..+++.+.
T Consensus 140 LK~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi---~id~eAl~lLa~~s~ 211 (563)
T PRK06647 140 LKTIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQI---KYEDEALKWIAYKST 211 (563)
T ss_pred HHhhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcC
Confidence 888883 45678888888888999999998 765 6899999999999998877755331 234556788888887
Q ss_pred CCChHHHHHHHHHHHHH
Q 004584 436 NYSGAELEGVAKSAVSF 452 (744)
Q Consensus 436 g~sg~dl~~l~~~A~~~ 452 (744)
| +.+++.++++.+..+
T Consensus 212 G-dlR~alslLdklis~ 227 (563)
T PRK06647 212 G-SVRDAYTLFDQVVSF 227 (563)
T ss_pred C-CHHHHHHHHHHHHhh
Confidence 6 778888887766543
No 234
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.31 E-value=1.1e-10 Score=125.45 Aligned_cols=171 Identities=18% Similarity=0.237 Sum_probs=110.8
Q ss_pred eeeeeecCCCCChhHHHHHHHhhcC-----CCEEEEcccccccccchhhHhhHHHHHHHH-Hh-----cCCCeEEEEecc
Q 004584 535 VTCLLEGPSGSGKTALAATAGIDSD-----FPFVKIISAESMIGLHESTKCAQIVKVFED-AY-----KSPLSIIILDDI 603 (744)
Q Consensus 535 ~~~Ll~GppG~GKT~la~~~a~~~~-----~~~i~v~~~~~~~g~~~~~~~~~i~~if~~-a~-----~~~~~il~iDEi 603 (744)
++++|+||||||||+++++++.... .+++.++..+.. + ...+++.+.. +. ...+.+|+|||+
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~-~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~ 111 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER-G------IDVIRNKIKEFARTAPVGGAPFKIIFLDEA 111 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc-c------hHHHHHHHHHHHhcCCCCCCCceEEEEeCc
Confidence 4689999999999999999998752 345555333211 1 1112222211 21 134579999999
Q ss_pred chhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCCCCHHHHHHHHHHc---
Q 004584 604 ERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQL--- 680 (744)
Q Consensus 604 d~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~--- 680 (744)
|.+. ...++.|+..++..+.. . .+|.++|.+..+.+ .+.+|+. .++|++++.+++..++++.
T Consensus 112 ~~l~----------~~~~~~L~~~le~~~~~--~-~lIl~~~~~~~l~~-~l~sr~~-~~~~~~l~~~ei~~~l~~~~~~ 176 (319)
T PRK00440 112 DNLT----------SDAQQALRRTMEMYSQN--T-RFILSCNYSSKIID-PIQSRCA-VFRFSPLKKEAVAERLRYIAEN 176 (319)
T ss_pred ccCC----------HHHHHHHHHHHhcCCCC--C-eEEEEeCCccccch-hHHHHhh-eeeeCCCCHHHHHHHHHHHHHH
Confidence 9984 33456677777765432 2 33334555444433 3556655 6899999999988888763
Q ss_pred -cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHH
Q 004584 681 -NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 739 (744)
Q Consensus 681 -~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~ 739 (744)
+...+++....+...++|++|.+++.++.+.... ..||.+++.+++.
T Consensus 177 ~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~~------------~~it~~~v~~~~~ 224 (319)
T PRK00440 177 EGIEITDDALEAIYYVSEGDMRKAINALQAAAATG------------KEVTEEAVYKITG 224 (319)
T ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcC------------CCCCHHHHHHHhC
Confidence 4434555666667778999999999999877642 3488888777654
No 235
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=1.1e-10 Score=127.67 Aligned_cols=181 Identities=16% Similarity=0.162 Sum_probs=116.5
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEccc----ccc-cccchhhHhhHHHHHHHHHhc----CCCeEEEEec
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISA----ESM-IGLHESTKCAQIVKVFEDAYK----SPLSIIILDD 602 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~----~~~-~g~~~~~~~~~i~~if~~a~~----~~~~il~iDE 602 (744)
..+.++|||||||+|||++|+++|+....+.....+. ..+ ...........++++++.+.. +.+.||+|||
T Consensus 37 ~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE 116 (367)
T PRK14970 37 HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDE 116 (367)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeC
Confidence 4557899999999999999999998754321100000 000 000011223467777777643 3457999999
Q ss_pred cchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCCCCHHHHHHHHHH---
Q 004584 603 IERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQ--- 679 (744)
Q Consensus 603 id~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~--- 679 (744)
+|.+. ...++.|+..++..+. ..++|.+++.+..+.+ .+.+|+ ..++|++++.+++..++..
T Consensus 117 ~~~l~----------~~~~~~ll~~le~~~~---~~~~Il~~~~~~kl~~-~l~sr~-~~v~~~~~~~~~l~~~l~~~~~ 181 (367)
T PRK14970 117 VHMLS----------SAAFNAFLKTLEEPPA---HAIFILATTEKHKIIP-TILSRC-QIFDFKRITIKDIKEHLAGIAV 181 (367)
T ss_pred hhhcC----------HHHHHHHHHHHhCCCC---ceEEEEEeCCcccCCH-HHHhcc-eeEecCCccHHHHHHHHHHHHH
Confidence 99874 3456677777766432 3344445555555554 344555 4789999999888877775
Q ss_pred -ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHH
Q 004584 680 -LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCL 738 (744)
Q Consensus 680 -~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al 738 (744)
.+...+++....+...++|++|.+++.++.....+. .. ||.+++.+++
T Consensus 182 ~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~~----------~~-it~~~v~~~~ 230 (367)
T PRK14970 182 KEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCG----------KN-ITRQAVTENL 230 (367)
T ss_pred HcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC----------CC-CCHHHHHHHh
Confidence 344455677777777889999999999998776532 12 7777666554
No 236
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.31 E-value=2.4e-11 Score=133.96 Aligned_cols=200 Identities=20% Similarity=0.259 Sum_probs=146.3
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCc-EEe-----
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEP-KIV----- 286 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~-~~v----- 286 (744)
+-.|++ +.|.+...+.| +.++..-.. ..+.||.||.|||||++||.+|+.++|... ..-
T Consensus 12 P~~F~e--vvGQe~v~~~L-~nal~~~ri------------~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C 76 (515)
T COG2812 12 PKTFDD--VVGQEHVVKTL-SNALENGRI------------AHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKC 76 (515)
T ss_pred cccHHH--hcccHHHHHHH-HHHHHhCcc------------hhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhh
Confidence 457888 89999988888 777654433 347899999999999999999999987641 111
Q ss_pred -cccchhc----------ccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHH
Q 004584 287 -NGPEVLS----------KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (744)
Q Consensus 287 -~~~~l~~----------~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~L 355 (744)
.|.++.. .....+-..+|++.+.+.. .|..++ +.|++|||+|.|. ...++.|
T Consensus 77 ~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y-~P~~~r---yKVyiIDEvHMLS-------------~~afNAL 139 (515)
T COG2812 77 ISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNY-APSEGR---YKVYIIDEVHMLS-------------KQAFNAL 139 (515)
T ss_pred hhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhcc-CCcccc---ceEEEEecHHhhh-------------HHHHHHH
Confidence 1111111 1112344567888777653 455444 4599999999873 4678899
Q ss_pred HHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcC
Q 004584 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (744)
Q Consensus 356 L~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~ 435 (744)
|..++ ++..+|.+|.+|..+..+++.+++ |+. ++.|..-+.++...-|+..+.+-.- ..++..+..+++..+
T Consensus 140 LKTLE--EPP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I---~~e~~aL~~ia~~a~ 211 (515)
T COG2812 140 LKTLE--EPPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGI---NIEEDALSLIARAAE 211 (515)
T ss_pred hcccc--cCccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCC---ccCHHHHHHHHHHcC
Confidence 99988 566789999999999999999998 654 5678888888887777776654331 234556778888888
Q ss_pred CCChHHHHHHHHHHHHHH
Q 004584 436 NYSGAELEGVAKSAVSFA 453 (744)
Q Consensus 436 g~sg~dl~~l~~~A~~~a 453 (744)
| +.+|...++..|..+.
T Consensus 212 G-s~RDalslLDq~i~~~ 228 (515)
T COG2812 212 G-SLRDALSLLDQAIAFG 228 (515)
T ss_pred C-ChhhHHHHHHHHHHcc
Confidence 7 8899999999887654
No 237
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=5.5e-11 Score=139.93 Aligned_cols=197 Identities=17% Similarity=0.126 Sum_probs=131.3
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE----Eecc
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK----IVNG 288 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~----~v~~ 288 (744)
..+|++ |.|.++.++.| +.++... +.++.+||+||+|||||++|+.+|+.++|..-. .-.|
T Consensus 11 P~~f~e--iiGqe~v~~~L-~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 11 PATFAE--VIGQEHVTEPL-STALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 457888 89999988887 6665432 223468999999999999999999999753210 0011
Q ss_pred cchhc------------cccc---chHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHH
Q 004584 289 PEVLS------------KFVG---ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVN 353 (744)
Q Consensus 289 ~~l~~------------~~~g---~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~ 353 (744)
..+.. .+.+ .....+|++.+.+.. .+.. +...|+||||+|.|. ....+
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~-~p~~---~~~KV~IIDEad~lt-------------~~a~N 138 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFF-APAE---SRYKIFIIDEAHMVT-------------PQGFN 138 (824)
T ss_pred HHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHh-chhc---CCceEEEEechhhcC-------------HHHHH
Confidence 11000 0011 123455665444432 2221 234599999999984 34567
Q ss_pred HHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHh
Q 004584 354 QLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAAR 433 (744)
Q Consensus 354 ~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~ 433 (744)
.||+.|+. ...++++|++|+.++.|.+.+++ |+. +++|..++.++..++|+..+++... -.++..+..+++.
T Consensus 139 aLLK~LEE--pP~~~~fIl~tt~~~kLl~TIrS--Rc~-~v~F~~l~~~~l~~~L~~il~~EGv---~id~eal~lLa~~ 210 (824)
T PRK07764 139 ALLKIVEE--PPEHLKFIFATTEPDKVIGTIRS--RTH-HYPFRLVPPEVMRGYLERICAQEGV---PVEPGVLPLVIRA 210 (824)
T ss_pred HHHHHHhC--CCCCeEEEEEeCChhhhhHHHHh--hee-EEEeeCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHH
Confidence 78888884 34578888888888899999998 653 7899999999999888887765431 1234456777777
Q ss_pred cCCCChHHHHHHHHHHH
Q 004584 434 TKNYSGAELEGVAKSAV 450 (744)
Q Consensus 434 t~g~sg~dl~~l~~~A~ 450 (744)
+.| +.+++.++++..+
T Consensus 211 sgG-dlR~Al~eLEKLi 226 (824)
T PRK07764 211 GGG-SVRDSLSVLDQLL 226 (824)
T ss_pred cCC-CHHHHHHHHHHHH
Confidence 766 7777777777655
No 238
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.30 E-value=3.9e-11 Score=134.86 Aligned_cols=167 Identities=17% Similarity=0.165 Sum_probs=109.4
Q ss_pred eeeeeecCCCCChhHHHHHHHhhc-----CCCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhhcc
Q 004584 535 VTCLLEGPSGSGKTALAATAGIDS-----DFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEY 609 (744)
Q Consensus 535 ~~~Ll~GppG~GKT~la~~~a~~~-----~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~ 609 (744)
..++|||++|||||+|++++++.. +..++++.+.+. +............+.|.+.+. .+.+|+||||+.+.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef-~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gk 392 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEF-TNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDK 392 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH-HHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCC
Confidence 459999999999999999999864 456666655442 211111111111223444443 3589999999998632
Q ss_pred CCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCC-CCCCCc--cccccccc--eEEEcCCCCHHHHHHHHHHc----
Q 004584 610 VPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSE-VSFLDS--VGICDAFS--VTYHVPTLKTDDAKKVLKQL---- 680 (744)
Q Consensus 610 ~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~-~~~l~~--~~l~~rf~--~~i~~p~~~~~~~~~Il~~~---- 680 (744)
...+..|+.+++.+...++. +|| |++. +..+.. ..|++||. ..+.+++|+.+.+.+||++.
T Consensus 393 --------e~tqeeLF~l~N~l~e~gk~-III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r 462 (617)
T PRK14086 393 --------ESTQEEFFHTFNTLHNANKQ-IVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQE 462 (617)
T ss_pred --------HHHHHHHHHHHHHHHhcCCC-EEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhc
Confidence 22344455555554333333 444 4444 443321 26778985 67799999999999999973
Q ss_pred cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhc
Q 004584 681 NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQG 713 (744)
Q Consensus 681 ~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~ 713 (744)
+...++|+...+......++|.|..++......
T Consensus 463 ~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~ 495 (617)
T PRK14086 463 QLNAPPEVLEFIASRISRNIRELEGALIRVTAF 495 (617)
T ss_pred CCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 455678888888888899999998888766443
No 239
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.30 E-value=3.4e-11 Score=125.08 Aligned_cols=133 Identities=26% Similarity=0.362 Sum_probs=89.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhcCCCcEEeccc------chhcccccchHHHHHHHH--------------------
Q 004584 254 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGP------EVLSKFVGETEKNIRDLF-------------------- 307 (744)
Q Consensus 254 ~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~------~l~~~~~g~~~~~i~~~f-------------------- 307 (744)
.+++||+||||||||++|+++|+.+ +.++..+++. ++++.+.+.....+.+-|
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~l-g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKR-DRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh-CCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 3579999999999999999999988 5666666554 444444332222111111
Q ss_pred HHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCc--------------cCCCcEEEEEE
Q 004584 308 ADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV--------------ESLNNVLLIGM 373 (744)
Q Consensus 308 ~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~--------------~~~~~v~vI~~ 373 (744)
-.|.. ...+|+|||++.+.+ .+.+.|+..|+.- ....++.||+|
T Consensus 100 ~~A~~---------~g~~lllDEi~r~~~-------------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaT 157 (262)
T TIGR02640 100 TLAVR---------EGFTLVYDEFTRSKP-------------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFT 157 (262)
T ss_pred HHHHH---------cCCEEEEcchhhCCH-------------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEe
Confidence 11111 124999999998642 2344455544321 12246789999
Q ss_pred eCCCC-----ccchhhcCCCccceEEEEcCCCHHHHHHHHHHHH
Q 004584 374 TNRKD-----MLDEALLRPGRLEVQVEISLPDENGRLQILQIHT 412 (744)
Q Consensus 374 tn~~~-----~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~ 412 (744)
+|... .+++++++ ||. .+.++.|+.++..+|++.++
T Consensus 158 sN~~~~~g~~~l~~aL~~--R~~-~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 158 SNPVEYAGVHETQDALLD--RLI-TIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred eCCccccceecccHHHHh--hcE-EEECCCCCHHHHHHHHHHhh
Confidence 99863 46899998 884 78999999999999999875
No 240
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.30 E-value=1.3e-10 Score=124.55 Aligned_cols=161 Identities=13% Similarity=0.064 Sum_probs=105.9
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHhhHHHHHHHHH-hcCCCeEEEEeccchhhccCC
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDA-YKSPLSIIILDDIERLLEYVP 611 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a-~~~~~~il~iDEid~l~~~~~ 611 (744)
.+..+||+||||+|||++|+++++..+.+++.+++.+ +. .......+.+..... ....+.+|+|||+|.+.
T Consensus 42 ~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~---~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~---- 113 (316)
T PHA02544 42 IPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD---CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG---- 113 (316)
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc---cc-HHHHHHHHHHHHHhhcccCCCeEEEEECccccc----
Confidence 3455566999999999999999999888888886654 11 110001122211111 01357899999999873
Q ss_pred CCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCCCCHHHHHHHHHH-----------c
Q 004584 612 IGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQ-----------L 680 (744)
Q Consensus 612 ~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~-----------~ 680 (744)
....++.|...++..+ .++.+|.++|.+..+.+ .+++||. .+.|+.|+.+++..+++. .
T Consensus 114 -----~~~~~~~L~~~le~~~---~~~~~Ilt~n~~~~l~~-~l~sR~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~ 183 (316)
T PHA02544 114 -----LADAQRHLRSFMEAYS---KNCSFIITANNKNGIIE-PLRSRCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAE 183 (316)
T ss_pred -----CHHHHHHHHHHHHhcC---CCceEEEEcCChhhchH-HHHhhce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 1335566666677643 24567778888877766 5677885 789999998887766543 1
Q ss_pred cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 004584 681 NVFAEEDVDSASEALNDMPIKKLYMLIEMAA 711 (744)
Q Consensus 681 ~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~ 711 (744)
+.-.+++....+.....++.|.+++.++...
T Consensus 184 ~~~i~~~al~~l~~~~~~d~r~~l~~l~~~~ 214 (316)
T PHA02544 184 GVEVDMKVLAALVKKNFPDFRRTINELQRYA 214 (316)
T ss_pred CCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 2233445555566667889999999888654
No 241
>PRK05642 DNA replication initiation factor; Validated
Probab=99.30 E-value=4e-11 Score=122.28 Aligned_cols=178 Identities=17% Similarity=0.256 Sum_probs=122.1
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhhccC
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYV 610 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~ 610 (744)
...++|+||+|+|||+++++++++. +...+.+...+ +... ...+.+.... ..+|+|||++.+.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~-~~~~--------~~~~~~~~~~--~d~LiiDDi~~~~~~- 112 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAE-LLDR--------GPELLDNLEQ--YELVCLDDLDVIAGK- 112 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHH-HHhh--------hHHHHHhhhh--CCEEEEechhhhcCC-
Confidence 4678999999999999999998643 45555554333 2211 1223333322 258999999987521
Q ss_pred CCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCc--cccccccc--eEEEcCCCCHHHHHHHHHH----ccC
Q 004584 611 PIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDS--VGICDAFS--VTYHVPTLKTDDAKKVLKQ----LNV 682 (744)
Q Consensus 611 ~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~--~~l~~rf~--~~i~~p~~~~~~~~~Il~~----~~~ 682 (744)
....+.|..+++.....+ +.++++++..|..+.. ..+++||. ..+.+.+|+.+++..+++. .+.
T Consensus 113 -------~~~~~~Lf~l~n~~~~~g-~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~ 184 (234)
T PRK05642 113 -------ADWEEALFHLFNRLRDSG-RRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGL 184 (234)
T ss_pred -------hHHHHHHHHHHHHHHhcC-CEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC
Confidence 233455666666553333 5577777766654442 37788984 6788899999999999993 345
Q ss_pred CCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHH
Q 004584 683 FAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 739 (744)
Q Consensus 683 ~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~ 739 (744)
..++++...+....++++|.+..+++.....+-. ....||..-++++|.
T Consensus 185 ~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~l~--------~~~~it~~~~~~~L~ 233 (234)
T PRK05642 185 HLTDEVGHFILTRGTRSMSALFDLLERLDQASLQ--------AQRKLTIPFLKETLG 233 (234)
T ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--------cCCcCCHHHHHHHhc
Confidence 5778899999999999999999998877543211 224499988888874
No 242
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=8.5e-11 Score=134.11 Aligned_cols=199 Identities=19% Similarity=0.215 Sum_probs=136.6
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEe------
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIV------ 286 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v------ 286 (744)
.-+|++ +.|.+..++.+ ..++..- +.+..+||+||+|+|||++|+++|+.+++......
T Consensus 20 P~~f~d--liGq~~~v~~L-~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~ 84 (598)
T PRK09111 20 PQTFDD--LIGQEAMVRTL-TNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID 84 (598)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc
Confidence 347888 99999998888 6666432 33568999999999999999999999975421100
Q ss_pred ------ccc--------chhccc--ccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHH
Q 004584 287 ------NGP--------EVLSKF--VGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDS 350 (744)
Q Consensus 287 ------~~~--------~l~~~~--~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~ 350 (744)
+|. +++.-. ....-..+|++.+.+... |.. +...|+||||+|.+. ..
T Consensus 85 ~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~-P~~---a~~KVvIIDEad~Ls-------------~~ 147 (598)
T PRK09111 85 LCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYR-PVS---ARYKVYIIDEVHMLS-------------TA 147 (598)
T ss_pred cCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhc-hhc---CCcEEEEEEChHhCC-------------HH
Confidence 011 111000 011245678887766533 322 234599999999873 23
Q ss_pred HHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHH
Q 004584 351 IVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQEL 430 (744)
Q Consensus 351 ~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~l 430 (744)
..+.||..|+. ....+.+|.+|+.++.+.+.+++ |+. .++|..|+.++...+++..+++... -.++..+..+
T Consensus 148 a~naLLKtLEe--Pp~~~~fIl~tte~~kll~tI~S--Rcq-~~~f~~l~~~el~~~L~~i~~kegi---~i~~eAl~lI 219 (598)
T PRK09111 148 AFNALLKTLEE--PPPHVKFIFATTEIRKVPVTVLS--RCQ-RFDLRRIEADVLAAHLSRIAAKEGV---EVEDEALALI 219 (598)
T ss_pred HHHHHHHHHHh--CCCCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHH
Confidence 56778888774 34567788888888889889988 764 7899999999999999887765431 2344557778
Q ss_pred HHhcCCCChHHHHHHHHHHHHH
Q 004584 431 AARTKNYSGAELEGVAKSAVSF 452 (744)
Q Consensus 431 a~~t~g~sg~dl~~l~~~A~~~ 452 (744)
++.+.| +.+++.++++.+..+
T Consensus 220 a~~a~G-dlr~al~~Ldkli~~ 240 (598)
T PRK09111 220 ARAAEG-SVRDGLSLLDQAIAH 240 (598)
T ss_pred HHHcCC-CHHHHHHHHHHHHhh
Confidence 888876 777887777766543
No 243
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.30 E-value=5e-11 Score=132.56 Aligned_cols=229 Identities=14% Similarity=0.240 Sum_probs=138.3
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhc----CCCcEEecc
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN----GMEPKIVNG 288 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~----~~~~~~v~~ 288 (744)
..+|++.-+|.-.+..-.....+... | | ....+++|||++|+|||+|++++++.+. +..+.++++
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~----~------~-~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~ 179 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKN----P------G-ISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG 179 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhC----c------C-cccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 46888875665443222221222211 1 1 1235699999999999999999999763 245567888
Q ss_pred cchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcE
Q 004584 289 PEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNV 368 (744)
Q Consensus 289 ~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v 368 (744)
.++...+........ +.+........ .+.+|+|||++.+..+. .....+..+++.+ ...+..
T Consensus 180 ~~f~~~~~~~l~~~~-~~~~~~~~~~~------~~dvLiIDDiq~l~~k~--------~~~e~lf~l~N~~---~~~~k~ 241 (450)
T PRK14087 180 DEFARKAVDILQKTH-KEIEQFKNEIC------QNDVLIIDDVQFLSYKE--------KTNEIFFTIFNNF---IENDKQ 241 (450)
T ss_pred HHHHHHHHHHHHHhh-hHHHHHHHHhc------cCCEEEEeccccccCCH--------HHHHHHHHHHHHH---HHcCCc
Confidence 887776544322110 11122211111 14599999999885321 1222333333332 222333
Q ss_pred EEEEEeCCCCc---cchhhcCCCccc--eEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHH
Q 004584 369 LLIGMTNRKDM---LDEALLRPGRLE--VQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELE 443 (744)
Q Consensus 369 ~vI~~tn~~~~---id~al~r~gRf~--~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~ 443 (744)
+|+.+...|.. +++.+++ ||. ..+.+.+|+.++|.+||+.+++...... ..++..++.|+..+.| +.+.+.
T Consensus 242 iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~-~l~~evl~~Ia~~~~g-d~R~L~ 317 (450)
T PRK14087 242 LFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQ-EVTEEAINFISNYYSD-DVRKIK 317 (450)
T ss_pred EEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHccCC-CHHHHH
Confidence 44443333433 5788888 764 6788999999999999999887543111 2345567888888886 889999
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHHhhh
Q 004584 444 GVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (744)
Q Consensus 444 ~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~ 486 (744)
+++......+.... ....++.+....++..+
T Consensus 318 gaL~~l~~~a~~~~------------~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 318 GSVSRLNFWSQQNP------------EEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHHHHHHhccc------------CCCCCCHHHHHHHHhhc
Confidence 99998876655421 01247777777777664
No 244
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=1.4e-10 Score=127.07 Aligned_cols=198 Identities=17% Similarity=0.219 Sum_probs=131.5
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccch-
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV- 291 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l- 291 (744)
+.+|++ +.|.+..++.+ ++.+... +.++++|||||||+|||++|+++++.+.+.... ..+..+
T Consensus 13 P~~~~~--iig~~~~~~~l-~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~-~~~~~~~ 76 (367)
T PRK14970 13 PQTFDD--VVGQSHITNTL-LNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYD-DPNEDFS 76 (367)
T ss_pred CCcHHh--cCCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC-CCCCCCC
Confidence 457888 89999988877 6666432 234589999999999999999999998542110 000000
Q ss_pred -----hcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCC
Q 004584 292 -----LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLN 366 (744)
Q Consensus 292 -----~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~ 366 (744)
++.........++++++.+... |. .+.+.|++|||+|.+. ...++.|+..++. ...
T Consensus 77 ~~~~~l~~~~~~~~~~i~~l~~~~~~~-p~---~~~~kiviIDE~~~l~-------------~~~~~~ll~~le~--~~~ 137 (367)
T PRK14970 77 FNIFELDAASNNSVDDIRNLIDQVRIP-PQ---TGKYKIYIIDEVHMLS-------------SAAFNAFLKTLEE--PPA 137 (367)
T ss_pred cceEEeccccCCCHHHHHHHHHHHhhc-cc---cCCcEEEEEeChhhcC-------------HHHHHHHHHHHhC--CCC
Confidence 0111112345677888776432 22 1235699999999774 1245667777664 334
Q ss_pred cEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHH
Q 004584 367 NVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVA 446 (744)
Q Consensus 367 ~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~ 446 (744)
..++|.+++.+..+.+++++ |+. .++++.|+.++...++...+.+... -.++..++.++..+.| +.+.+.+.+
T Consensus 138 ~~~~Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~---~i~~~al~~l~~~~~g-dlr~~~~~l 210 (367)
T PRK14970 138 HAIFILATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGI---KFEDDALHIIAQKADG-ALRDALSIF 210 (367)
T ss_pred ceEEEEEeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhCCC-CHHHHHHHH
Confidence 56677777788889999988 654 6899999999999888877765431 1344567888887765 666666666
Q ss_pred HHHHHH
Q 004584 447 KSAVSF 452 (744)
Q Consensus 447 ~~A~~~ 452 (744)
+....+
T Consensus 211 ekl~~y 216 (367)
T PRK14970 211 DRVVTF 216 (367)
T ss_pred HHHHHh
Confidence 655544
No 245
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.29 E-value=2.1e-11 Score=145.70 Aligned_cols=140 Identities=16% Similarity=0.181 Sum_probs=102.1
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhc----------CCCEEEEccccccccc-chhhHhhHHHHHHHHHhc-CCCeEEE
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDS----------DFPFVKIISAESMIGL-HESTKCAQIVKVFEDAYK-SPLSIII 599 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~----------~~~~i~v~~~~~~~g~-~~~~~~~~i~~if~~a~~-~~~~il~ 599 (744)
....+++|+||||||||++|+.+|... +.+++.++....+.|. +.++.++.++++|+.+.+ ..+.|||
T Consensus 197 ~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILf 276 (857)
T PRK10865 197 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILF 276 (857)
T ss_pred CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEE
Confidence 345688999999999999999999875 5677777656554443 455666789999988643 5679999
Q ss_pred EeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCC-----CCccccccccceEEEcCCCCHHHHH
Q 004584 600 LDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSF-----LDSVGICDAFSVTYHVPTLKTDDAK 674 (744)
Q Consensus 600 iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~-----l~~~~l~~rf~~~i~~p~~~~~~~~ 674 (744)
|||+|.|.+.+.... +....+.|...+. ...+.+||+|+..+. .|+ .+.+||. .|.++.|+.++..
T Consensus 277 IDEih~l~~~~~~~~--~~d~~~~lkp~l~-----~g~l~~IgaTt~~e~r~~~~~d~-al~rRf~-~i~v~eP~~~~~~ 347 (857)
T PRK10865 277 IDELHTMVGAGKADG--AMDAGNMLKPALA-----RGELHCVGATTLDEYRQYIEKDA-ALERRFQ-KVFVAEPSVEDTI 347 (857)
T ss_pred EecHHHhccCCCCcc--chhHHHHhcchhh-----cCCCeEEEcCCCHHHHHHhhhcH-HHHhhCC-EEEeCCCCHHHHH
Confidence 999999986543211 2233444443332 357899999998774 455 6677997 5789999999999
Q ss_pred HHHHHc
Q 004584 675 KVLKQL 680 (744)
Q Consensus 675 ~Il~~~ 680 (744)
.|++..
T Consensus 348 ~iL~~l 353 (857)
T PRK10865 348 AILRGL 353 (857)
T ss_pred HHHHHH
Confidence 999863
No 246
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.28 E-value=3.3e-11 Score=128.81 Aligned_cols=170 Identities=16% Similarity=0.177 Sum_probs=114.3
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEccccc--------ccccchhhHh---hHHHHHHHHHhcCCCeEE
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES--------MIGLHESTKC---AQIVKVFEDAYKSPLSII 598 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~--------~~g~~~~~~~---~~i~~if~~a~~~~~~il 598 (744)
...+|||+|++||||+++|++++..+ +.+|+.++|... ++|...+... ..-...|..| ..++|
T Consensus 21 ~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL 97 (329)
T TIGR02974 21 LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGTL 97 (329)
T ss_pred CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCEE
Confidence 34779999999999999999998765 479999998753 1221110000 0011234443 34789
Q ss_pred EEeccchhhccCCCCcchhHHHHHHHHHHhccCC--------CCCCcEEEEEeCCCCC--CCCcc----cccccc-ceEE
Q 004584 599 ILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP--------PKGKKLLVIGTTSEVS--FLDSV----GICDAF-SVTY 663 (744)
Q Consensus 599 ~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--------~~~~~v~vi~~tn~~~--~l~~~----~l~~rf-~~~i 663 (744)
|||||+.|. ..++..|+..++.-. ....++.+|++|+..- +.... .|..|+ ...|
T Consensus 98 ~Ldei~~L~----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i 167 (329)
T TIGR02974 98 FLDELATAS----------LLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLAFDVI 167 (329)
T ss_pred EeCChHhCC----------HHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhcchhc
Confidence 999999984 667778888775421 1123578898887641 12211 333566 3579
Q ss_pred EcCCCC--HHHHHHHHHHc--------c-----CCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhccc
Q 004584 664 HVPTLK--TDDAKKVLKQL--------N-----VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQ 715 (744)
Q Consensus 664 ~~p~~~--~~~~~~Il~~~--------~-----~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~ 715 (744)
++||+. .+|+..+++++ + .++++.+..+..+-++||+|+|.++++++...+.
T Consensus 168 ~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~~ 234 (329)
T TIGR02974 168 TLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRHG 234 (329)
T ss_pred CCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhCC
Confidence 999999 78888887762 1 3555556666666679999999999999988753
No 247
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.28 E-value=2.4e-11 Score=145.78 Aligned_cols=172 Identities=19% Similarity=0.200 Sum_probs=115.8
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhc----------CCCEEEEcccccccc-cchhhHhhHHHHHHHHHhc-CCCeEEE
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDS----------DFPFVKIISAESMIG-LHESTKCAQIVKVFEDAYK-SPLSIII 599 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~----------~~~~i~v~~~~~~~g-~~~~~~~~~i~~if~~a~~-~~~~il~ 599 (744)
....+++|+||||||||++++.+|... +.+++.++....+.| .+.++.+..++++|+.+.+ ..+.|||
T Consensus 192 ~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILf 271 (852)
T TIGR03346 192 RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILF 271 (852)
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEE
Confidence 345778999999999999999999764 556666654444434 3455666789999998864 3589999
Q ss_pred EeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCC-----CCccccccccceEEEcCCCCHHHHH
Q 004584 600 LDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSF-----LDSVGICDAFSVTYHVPTLKTDDAK 674 (744)
Q Consensus 600 iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~-----l~~~~l~~rf~~~i~~p~~~~~~~~ 674 (744)
|||||.|.+.+... .+....+.|...+ ....+.+||+|+..+. .|+ .+.+||. .+.++.|+.+++.
T Consensus 272 IDEih~l~~~g~~~--~~~d~~~~Lk~~l-----~~g~i~~IgaTt~~e~r~~~~~d~-al~rRf~-~i~v~~p~~~~~~ 342 (852)
T TIGR03346 272 IDELHTLVGAGKAE--GAMDAGNMLKPAL-----ARGELHCIGATTLDEYRKYIEKDA-ALERRFQ-PVFVDEPTVEDTI 342 (852)
T ss_pred eccHHHhhcCCCCc--chhHHHHHhchhh-----hcCceEEEEeCcHHHHHHHhhcCH-HHHhcCC-EEEeCCCCHHHHH
Confidence 99999998533211 1222334443333 2347899999998753 454 6678996 6899999999999
Q ss_pred HHHHHc--------cC-CCHHHHHHHHHhCC------CCcHHHHHHHHHHHHhc
Q 004584 675 KVLKQL--------NV-FAEEDVDSASEALN------DMPIKKLYMLIEMAAQG 713 (744)
Q Consensus 675 ~Il~~~--------~~-~~~~~~~~~~~~~~------~g~ir~l~~~l~~a~~~ 713 (744)
.|++.. +. ..++.+..++ .++ ..-..+++++++.|+..
T Consensus 343 ~iL~~~~~~~e~~~~v~~~d~~i~~~~-~ls~~yi~~r~lPdkAidlld~a~a~ 395 (852)
T TIGR03346 343 SILRGLKERYEVHHGVRITDPAIVAAA-TLSHRYITDRFLPDKAIDLIDEAAAR 395 (852)
T ss_pred HHHHHHHHHhccccCCCCCHHHHHHHH-HhccccccccCCchHHHHHHHHHHHH
Confidence 999863 22 3444444443 332 22345677888777653
No 248
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=8.4e-11 Score=129.46 Aligned_cols=200 Identities=18% Similarity=0.187 Sum_probs=129.9
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE--------
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK-------- 284 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~-------- 284 (744)
+-+|++ |-|.+..++.+ +.++... +.+..+||+||||+|||++|+++|+.+.+....
T Consensus 12 P~~~~e--iiGq~~~~~~L-~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 12 PKKFAD--ITAQEHITRTI-QNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred CCcHhh--ccChHHHHHHH-HHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 446888 88999888877 6666532 234569999999999999999999999763210
Q ss_pred -Eecccc------hh-------ccccc---chHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCcc
Q 004584 285 -IVNGPE------VL-------SKFVG---ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGV 347 (744)
Q Consensus 285 -~v~~~~------l~-------~~~~g---~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~ 347 (744)
.-.|.. +. ..+.| .....++++.+.+.. .|..+ ...|+||||+|.+.
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~-~p~~~---~~kvvIIdea~~l~------------ 140 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRY-GPQKG---RYRVYIIDEVHMLS------------ 140 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhh-chhcC---CeEEEEEeChhhCC------------
Confidence 000100 00 01112 123456666555532 22222 23599999999874
Q ss_pred HHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccH
Q 004584 348 HDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNL 427 (744)
Q Consensus 348 ~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l 427 (744)
....+.|+..++. .....++|.+|+.+..+.+.+++ |+. .++|..++.++..+.++..++... .-.++..+
T Consensus 141 -~~~~~~LLk~LEe--p~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g---~~i~~~al 211 (397)
T PRK14955 141 -IAAFNAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEG---ISVDADAL 211 (397)
T ss_pred -HHHHHHHHHHHhc--CCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcC---CCCCHHHH
Confidence 1244567777763 33466677777777888888887 665 689999999988888887765432 12345567
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHH
Q 004584 428 QELAARTKNYSGAELEGVAKSAVSFA 453 (744)
Q Consensus 428 ~~la~~t~g~sg~dl~~l~~~A~~~a 453 (744)
+.++..+.| +.+.+.+.++.+..++
T Consensus 212 ~~l~~~s~g-~lr~a~~~L~kl~~~~ 236 (397)
T PRK14955 212 QLIGRKAQG-SMRDAQSILDQVIAFS 236 (397)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHHhc
Confidence 888888876 6677777777665443
No 249
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.28 E-value=1.5e-11 Score=128.49 Aligned_cols=140 Identities=19% Similarity=0.210 Sum_probs=96.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhcc--cccchHHH----------HHHHHHHHHhcccccCCC
Q 004584 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSK--FVGETEKN----------IRDLFADAENDQRTRGDQ 320 (744)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~--~~g~~~~~----------i~~~f~~a~~~~~~~~~~ 320 (744)
..++|||.||||||||++++.+|+.++ .++..+++...+.. ..|...-. ....+..|..
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~-~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-------- 133 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLN-WPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-------- 133 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHC-CCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh--------
Confidence 356899999999999999999999994 66777776655543 34432111 1112233332
Q ss_pred CCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHh-----c----cCccCCCcEEEEEEeCCCC------------c
Q 004584 321 SDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTK-----I----DGVESLNNVLLIGMTNRKD------------M 379 (744)
Q Consensus 321 ~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~-----~----d~~~~~~~v~vI~~tn~~~------------~ 379 (744)
.+++|++||+|..-++ ....++.+|+. + +.+....++.||+|+|..+ .
T Consensus 134 -~g~illlDEin~a~p~----------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~ 202 (327)
T TIGR01650 134 -HNVALCFDEYDAGRPD----------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQ 202 (327)
T ss_pred -CCeEEEechhhccCHH----------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeec
Confidence 2579999999986422 23344445542 1 1123445799999999865 2
Q ss_pred cchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhc
Q 004584 380 LDEALLRPGRLEVQVEISLPDENGRLQILQIHTNK 414 (744)
Q Consensus 380 id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~ 414 (744)
++++++. ||...+.++.|+.+.-.+|+......
T Consensus 203 l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 203 INQAQMD--RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred CCHHHHh--heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 5899998 99988999999999999999876543
No 250
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.27 E-value=1.5e-10 Score=128.82 Aligned_cols=197 Identities=20% Similarity=0.247 Sum_probs=129.1
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE--------
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK-------- 284 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~-------- 284 (744)
+.+|++ |.|.++.++.+ +.++... +.++.+|||||||+|||++|+++|+.+.+....
T Consensus 13 P~~~~d--iiGq~~~v~~L-~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~ 77 (451)
T PRK06305 13 PQTFSE--ILGQDAVVAVL-KNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ 77 (451)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc
Confidence 357888 99999998877 6665432 234579999999999999999999998643110
Q ss_pred Eecccchh-------cccccc---hHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHH
Q 004584 285 IVNGPEVL-------SKFVGE---TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQ 354 (744)
Q Consensus 285 ~v~~~~l~-------~~~~g~---~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~ 354 (744)
..+|..+. -.+.|. .-..++++.+..... +. .+...|++|||+|.+. ....+.
T Consensus 78 c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~-~~---~~~~kvvIIdead~lt-------------~~~~n~ 140 (451)
T PRK06305 78 CASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFT-PS---KSRYKIYIIDEVHMLT-------------KEAFNS 140 (451)
T ss_pred cHHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhh-hh---cCCCEEEEEecHHhhC-------------HHHHHH
Confidence 00011110 011121 123455544333221 11 1234699999999874 234567
Q ss_pred HHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhc
Q 004584 355 LLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAART 434 (744)
Q Consensus 355 LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t 434 (744)
|+..|+. ....+++|++|+.+..+.+.+++ |+. .++|..++.++....++..+++... -.++..+..++..+
T Consensus 141 LLk~lEe--p~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~---~i~~~al~~L~~~s 212 (451)
T PRK06305 141 LLKTLEE--PPQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGI---ETSREALLPIARAA 212 (451)
T ss_pred HHHHhhc--CCCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHc
Confidence 8888885 34577888888888999999998 765 6899999999988888877654331 13445678888888
Q ss_pred CCCChHHHHHHHHHHH
Q 004584 435 KNYSGAELEGVAKSAV 450 (744)
Q Consensus 435 ~g~sg~dl~~l~~~A~ 450 (744)
.| +.+.+.++++...
T Consensus 213 ~g-dlr~a~~~Lekl~ 227 (451)
T PRK06305 213 QG-SLRDAESLYDYVV 227 (451)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 65 6666666666544
No 251
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.27 E-value=6.4e-11 Score=131.69 Aligned_cols=192 Identities=16% Similarity=0.196 Sum_probs=120.6
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhc-----CCCEEEEcccccccccchhhH---hhHHHHHHHHHhcCCCeEEEEecc
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDS-----DFPFVKIISAESMIGLHESTK---CAQIVKVFEDAYKSPLSIIILDDI 603 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~-----~~~~i~v~~~~~~~g~~~~~~---~~~i~~if~~a~~~~~~il~iDEi 603 (744)
....+++|||++|+|||++++++++.. +..++.+.+.+ +........ ...+.+ |...+. ...+|+|||+
T Consensus 139 ~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~-f~~~~~~~l~~~~~~~~~-~~~~~~-~~dvLiIDDi 215 (450)
T PRK14087 139 ISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDE-FARKAVDILQKTHKEIEQ-FKNEIC-QNDVLIIDDV 215 (450)
T ss_pred cccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH-HHHHHHHHHHHhhhHHHH-HHHHhc-cCCEEEEecc
Confidence 345679999999999999999999743 45566664443 322111110 011222 222222 4579999999
Q ss_pred chhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCc--cccccccc--eEEEcCCCCHHHHHHHHHH
Q 004584 604 ERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDS--VGICDAFS--VTYHVPTLKTDDAKKVLKQ 679 (744)
Q Consensus 604 d~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~--~~l~~rf~--~~i~~p~~~~~~~~~Il~~ 679 (744)
+.+.+ ....+..|..+++.....++ .+|+++...|..+.. ..+++||. ..+.+++|+.+++.+|+++
T Consensus 216 q~l~~--------k~~~~e~lf~l~N~~~~~~k-~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 216 QFLSY--------KEKTNEIFFTIFNNFIENDK-QLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred ccccC--------CHHHHHHHHHHHHHHHHcCC-cEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 98852 13344555555555433333 345544444544432 25668885 7788999999999999986
Q ss_pred c----c--CCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHHHH
Q 004584 680 L----N--VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDM 741 (744)
Q Consensus 680 ~----~--~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~~~ 741 (744)
. + ...++++...++...++++|.+..++..+...+... .....||.+.+.+++.++
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~------~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQN------PEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcc------cCCCCCCHHHHHHHHhhc
Confidence 3 2 146678889999999999999999998775443220 001346666666666654
No 252
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=1.6e-10 Score=132.84 Aligned_cols=164 Identities=15% Similarity=0.183 Sum_probs=111.1
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhcCCCEEEE------------------cccccc-cccchhhHhhHHHHHHHHHhc--
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKI------------------ISAESM-IGLHESTKCAQIVKVFEDAYK-- 592 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v------------------~~~~~~-~g~~~~~~~~~i~~if~~a~~-- 592 (744)
..++||+||+|+|||++|+++|+...+..... ..++.+ +......+.+.++++.+.+..
T Consensus 38 ~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p 117 (620)
T PRK14948 38 APAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAP 117 (620)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhCh
Confidence 46799999999999999999998765421000 000100 111112345678888887753
Q ss_pred --CCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCCCCH
Q 004584 593 --SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKT 670 (744)
Q Consensus 593 --~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~~~ 670 (744)
+...|+||||+|.|. ...+++|+..|+..+. .+++|.+|+.++.+-+ .+++|. ..++|++++.
T Consensus 118 ~~~~~KViIIDEad~Lt----------~~a~naLLK~LEePp~---~tvfIL~t~~~~~llp-TIrSRc-~~~~f~~l~~ 182 (620)
T PRK14948 118 VQARWKVYVIDECHMLS----------TAAFNALLKTLEEPPP---RVVFVLATTDPQRVLP-TIISRC-QRFDFRRIPL 182 (620)
T ss_pred hcCCceEEEEECccccC----------HHHHHHHHHHHhcCCc---CeEEEEEeCChhhhhH-HHHhhe-eEEEecCCCH
Confidence 345799999999984 5567888888886432 4566666666655544 355564 6889999998
Q ss_pred HHHHHHHHH----ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHh
Q 004584 671 DDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQ 712 (744)
Q Consensus 671 ~~~~~Il~~----~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~ 712 (744)
+++...+.. .+...+++....+...++|++|.+++.++....
T Consensus 183 ~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLeklsL 228 (620)
T PRK14948 183 EAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSL 228 (620)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 887766654 344445566777888889999999999987544
No 253
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=2e-10 Score=131.26 Aligned_cols=185 Identities=15% Similarity=0.171 Sum_probs=118.7
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhcCCCEE-----------EE-------------ccccc--ccccchhhHhhHHHH
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFV-----------KI-------------ISAES--MIGLHESTKCAQIVK 585 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i-----------~v-------------~~~~~--~~g~~~~~~~~~i~~ 585 (744)
.-+.++||+||+|||||++|+.+|+...+.-- .- ..++. +-|.+ ....+.|++
T Consensus 36 ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s-~~~vd~Ir~ 114 (620)
T PRK14954 36 RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAAS-NNSVDDIRQ 114 (620)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccc-cCCHHHHHH
Confidence 33455899999999999999999987655210 00 00000 01100 112346666
Q ss_pred HHHHHh----cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccce
Q 004584 586 VFEDAY----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSV 661 (744)
Q Consensus 586 if~~a~----~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~ 661 (744)
+.+.+. .+...|++|||+|.+. ...++.|+..|+..+. .+++|.+|+.+..+-+ .+++| +.
T Consensus 115 l~e~~~~~P~~~~~KVvIIdEad~Lt----------~~a~naLLK~LEePp~---~tv~IL~t~~~~kLl~-TI~SR-c~ 179 (620)
T PRK14954 115 LRENVRYGPQKGRYRVYIIDEVHMLS----------TAAFNAFLKTLEEPPP---HAIFIFATTELHKIPA-TIASR-CQ 179 (620)
T ss_pred HHHHHHhhhhcCCCEEEEEeChhhcC----------HHHHHHHHHHHhCCCC---CeEEEEEeCChhhhhH-HHHhh-ce
Confidence 666552 3456899999999984 4557788888887643 3344444454444433 23344 46
Q ss_pred EEEcCCCCHHHHHHHHHH----ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHH
Q 004584 662 TYHVPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDC 737 (744)
Q Consensus 662 ~i~~p~~~~~~~~~Il~~----~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~a 737 (744)
.++|.+++.+++...+++ .+...+++....+...++|++|.+++.++.....+... .+...||.+++.+.
T Consensus 180 ~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeKL~~y~~~~------~~~~~It~~~V~~l 253 (620)
T PRK14954 180 RFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSVGS------EAEKVIAYQGVAEL 253 (620)
T ss_pred EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcccc------ccCCccCHHHHHHH
Confidence 999999998888877665 34445667777788888999999999999766654110 12356888877765
Q ss_pred H
Q 004584 738 L 738 (744)
Q Consensus 738 l 738 (744)
+
T Consensus 254 v 254 (620)
T PRK14954 254 L 254 (620)
T ss_pred H
Confidence 5
No 254
>PRK09087 hypothetical protein; Validated
Probab=99.26 E-value=4.7e-11 Score=120.74 Aligned_cols=171 Identities=15% Similarity=0.134 Sum_probs=118.2
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhhccCCCC
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIG 613 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~~~g 613 (744)
...++|+||+|||||+++++++...+..++... .+ ..+++..... .+|+|||++.+. .
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~---~~-----------~~~~~~~~~~---~~l~iDDi~~~~-----~ 101 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALLIHPN---EI-----------GSDAANAAAE---GPVLIEDIDAGG-----F 101 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEEecHH---Hc-----------chHHHHhhhc---CeEEEECCCCCC-----C
Confidence 345899999999999999999988765544331 11 1112222222 479999999763 1
Q ss_pred cchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCc--cccccccc--eEEEcCCCCHHHHHHHHHHc----cCCCH
Q 004584 614 PRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDS--VGICDAFS--VTYHVPTLKTDDAKKVLKQL----NVFAE 685 (744)
Q Consensus 614 ~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~--~~l~~rf~--~~i~~p~~~~~~~~~Il~~~----~~~~~ 685 (744)
.+..|..+++.....+ +.+||+++..|..+.. ..+++|+. ..+.+++|+.+++..++++. +...+
T Consensus 102 ------~~~~lf~l~n~~~~~g-~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~ 174 (226)
T PRK09087 102 ------DETGLFHLINSVRQAG-TSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVD 174 (226)
T ss_pred ------CHHHHHHHHHHHHhCC-CeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 1233555554443333 5577777766664433 36788885 78999999999999999963 45678
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHHHH
Q 004584 686 EDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDM 741 (744)
Q Consensus 686 ~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~~~ 741 (744)
+|+...+.....+++|.+..++......+.. ....||...++++++++
T Consensus 175 ~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~--------~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 175 PHVVYYLVSRMERSLFAAQTIVDRLDRLALE--------RKSRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH--------hCCCCCHHHHHHHHHhh
Confidence 8888888888899999999877665544321 22459999999999875
No 255
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.26 E-value=1.4e-10 Score=129.56 Aligned_cols=199 Identities=17% Similarity=0.195 Sum_probs=135.1
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE-------
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI------- 285 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~------- 285 (744)
+-+|++ |.|.+..++.+ +.++..- +.++.+|||||+|+|||++|+++++.+.+.....
T Consensus 10 P~~fde--iiGqe~v~~~L-~~~I~~g------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 10 PKHFDE--LIGQESVSKTL-SLALDNN------------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred CCCHHH--ccCcHHHHHHH-HHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 357888 99999988887 6655432 2344679999999999999999999985321100
Q ss_pred ecc--------cchhcccccc---hHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHH
Q 004584 286 VNG--------PEVLSKFVGE---TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQ 354 (744)
Q Consensus 286 v~~--------~~l~~~~~g~---~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~ 354 (744)
-+| .+++.. -+. .-..++++.+.+.. .|.. +...|++|||+|.+. ....+.
T Consensus 75 ~~C~~~~~~~h~dv~el-daas~~gId~IRelie~~~~-~P~~---~~~KVvIIDEad~Lt-------------~~A~NA 136 (535)
T PRK08451 75 IQCQSALENRHIDIIEM-DAASNRGIDDIRELIEQTKY-KPSM---ARFKIFIIDEVHMLT-------------KEAFNA 136 (535)
T ss_pred HHHHHHhhcCCCeEEEe-ccccccCHHHHHHHHHHHhh-Cccc---CCeEEEEEECcccCC-------------HHHHHH
Confidence 000 011100 011 13456666654332 2222 224599999999873 345677
Q ss_pred HHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhc
Q 004584 355 LLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAART 434 (744)
Q Consensus 355 LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t 434 (744)
||..|+.. ...+.+|.+|+.+..+.+++++ |. ..++|..++.++..+.++..+++... ..++..+..+++.+
T Consensus 137 LLK~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi---~i~~~Al~~Ia~~s 208 (535)
T PRK08451 137 LLKTLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGV---SYEPEALEILARSG 208 (535)
T ss_pred HHHHHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHc
Confidence 88888854 4567777778888999999998 74 47899999999888888877665331 23455678888888
Q ss_pred CCCChHHHHHHHHHHHHHH
Q 004584 435 KNYSGAELEGVAKSAVSFA 453 (744)
Q Consensus 435 ~g~sg~dl~~l~~~A~~~a 453 (744)
.| +.+++.++++.+..++
T Consensus 209 ~G-dlR~alnlLdqai~~~ 226 (535)
T PRK08451 209 NG-SLRDTLTLLDQAIIYC 226 (535)
T ss_pred CC-cHHHHHHHHHHHHHhc
Confidence 76 8888888888877654
No 256
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=1.7e-10 Score=132.52 Aligned_cols=196 Identities=20% Similarity=0.236 Sum_probs=131.5
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE---ec--
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI---VN-- 287 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~---v~-- 287 (744)
.-.|++ +.|.++.++.+ ++++.... ...++||+||+|+|||++|+++|+.+.+..... -.
T Consensus 12 P~~f~~--liGq~~i~~~L-~~~l~~~r------------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 12 PQRFDE--LVGQEAIATTL-KNALISNR------------IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred CCcHhh--ccChHHHHHHH-HHHHHcCC------------CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 356788 89999988888 66665321 234799999999999999999999997532110 00
Q ss_pred -c-----------cchh--cccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHH
Q 004584 288 -G-----------PEVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVN 353 (744)
Q Consensus 288 -~-----------~~l~--~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~ 353 (744)
| .+++ ....+.....+|++.+.+... +..+ ...|+||||+|.|. ....+
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~-p~~~---~~KViIIDEad~Lt-------------~~a~n 139 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFA-PVQA---RWKVYVIDECHMLS-------------TAAFN 139 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhC-hhcC---CceEEEEECccccC-------------HHHHH
Confidence 1 1111 111224456788888776532 2222 23599999999873 24567
Q ss_pred HHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHh
Q 004584 354 QLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAAR 433 (744)
Q Consensus 354 ~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~ 433 (744)
.||..|+ +....+++|++|+.++.+.+.+++ |+. .++|..++.++....++..+++... -.++..+..+++.
T Consensus 140 aLLK~LE--ePp~~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi---~is~~al~~La~~ 211 (620)
T PRK14948 140 ALLKTLE--EPPPRVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESI---EIEPEALTLVAQR 211 (620)
T ss_pred HHHHHHh--cCCcCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHH
Confidence 7888888 345578888888888889999988 764 6889989888877777665554321 1233457788888
Q ss_pred cCCCChHHHHHHHHHH
Q 004584 434 TKNYSGAELEGVAKSA 449 (744)
Q Consensus 434 t~g~sg~dl~~l~~~A 449 (744)
+.| ..+++.++++..
T Consensus 212 s~G-~lr~A~~lLekl 226 (620)
T PRK14948 212 SQG-GLRDAESLLDQL 226 (620)
T ss_pred cCC-CHHHHHHHHHHH
Confidence 876 446666666543
No 257
>PRK04132 replication factor C small subunit; Provisional
Probab=99.26 E-value=1e-10 Score=136.58 Aligned_cols=160 Identities=15% Similarity=0.171 Sum_probs=121.0
Q ss_pred CCceeeeeec--CCCCChhHHHHHHHhhc-----CCCEEEEcccccccccchhhHhhHHHHHHHHHhcC------CCeEE
Q 004584 532 SPLVTCLLEG--PSGSGKTALAATAGIDS-----DFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKS------PLSII 598 (744)
Q Consensus 532 ~~~~~~Ll~G--ppG~GKT~la~~~a~~~-----~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~------~~~il 598 (744)
.|.-+-+..| |++.|||++|.++|++. +.+++.++.++. . ..+.++++.+.+... +..|+
T Consensus 562 ~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~-r------gid~IR~iIk~~a~~~~~~~~~~KVv 634 (846)
T PRK04132 562 VPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDE-R------GINVIREKVKEFARTKPIGGASFKII 634 (846)
T ss_pred cCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCc-c------cHHHHHHHHHHHHhcCCcCCCCCEEE
Confidence 3445567789 99999999999999986 567899987763 1 223566666554321 34799
Q ss_pred EEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCCCCHHHHHHHHH
Q 004584 599 ILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLK 678 (744)
Q Consensus 599 ~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~ 678 (744)
||||+|.|. ...+++|+..|+..+ ..+.+|.+||.+..+-+ .+++| +..+.|++++.+++...|+
T Consensus 635 IIDEaD~Lt----------~~AQnALLk~lEep~---~~~~FILi~N~~~kIi~-tIrSR-C~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 635 FLDEADALT----------QDAQQALRRTMEMFS---SNVRFILSCNYSSKIIE-PIQSR-CAIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred EEECcccCC----------HHHHHHHHHHhhCCC---CCeEEEEEeCChhhCch-HHhhh-ceEEeCCCCCHHHHHHHHH
Confidence 999999984 568899999998753 36677888888877665 45566 5799999999888887777
Q ss_pred Hc----cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhc
Q 004584 679 QL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQG 713 (744)
Q Consensus 679 ~~----~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~ 713 (744)
.. +...+++....+...+.|++|.++++++.++..
T Consensus 700 ~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~~~~ 738 (846)
T PRK04132 700 YIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAAL 738 (846)
T ss_pred HHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 52 344466777788889999999999999987754
No 258
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=3.3e-10 Score=130.29 Aligned_cols=159 Identities=17% Similarity=0.181 Sum_probs=111.5
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhcCC-------------------------CEEEEcccccccccchhhHhhHHHHHH
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDSDF-------------------------PFVKIISAESMIGLHESTKCAQIVKVF 587 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~~~-------------------------~~i~v~~~~~~~g~~~~~~~~~i~~if 587 (744)
.+..+|||||+|+|||++|+++|....+ +++.+++. .......++++.
T Consensus 38 l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~-------~~~~vd~Ir~li 110 (614)
T PRK14971 38 LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAA-------SNNSVDDIRNLI 110 (614)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEeccc-------ccCCHHHHHHHH
Confidence 4455899999999999999999986532 22222211 111234677777
Q ss_pred HHHhc----CCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEE
Q 004584 588 EDAYK----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTY 663 (744)
Q Consensus 588 ~~a~~----~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i 663 (744)
+.+.. +...|++|||+|.|. ...+++|+..|+..+. ..++|.+|+.+..+-+ .+++| +..+
T Consensus 111 ~~~~~~P~~~~~KVvIIdea~~Ls----------~~a~naLLK~LEepp~---~tifIL~tt~~~kIl~-tI~SR-c~iv 175 (614)
T PRK14971 111 EQVRIPPQIGKYKIYIIDEVHMLS----------QAAFNAFLKTLEEPPS---YAIFILATTEKHKILP-TILSR-CQIF 175 (614)
T ss_pred HHHhhCcccCCcEEEEEECcccCC----------HHHHHHHHHHHhCCCC---CeEEEEEeCCchhchH-HHHhh-hhee
Confidence 76643 345799999999984 5567889888887643 3344445555554444 34555 4579
Q ss_pred EcCCCCHHHHHHHHHH----ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhc
Q 004584 664 HVPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQG 713 (744)
Q Consensus 664 ~~p~~~~~~~~~Il~~----~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~ 713 (744)
+|++++.+++...+++ .+...+++....+...++|++|.+++.++.....
T Consensus 176 ~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~~y 229 (614)
T PRK14971 176 DFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSF 229 (614)
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999988877764 4555566777788888899999999999887655
No 259
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.25 E-value=5.9e-11 Score=130.94 Aligned_cols=180 Identities=20% Similarity=0.231 Sum_probs=128.5
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhcCCC-------EEEEc-ccccccc------cc---hhhHhhHHHHHHHHHh----c
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDSDFP-------FVKII-SAESMIG------LH---ESTKCAQIVKVFEDAY----K 592 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~~~~-------~i~v~-~~~~~~g------~~---~~~~~~~i~~if~~a~----~ 592 (744)
....||.||.|+|||++||.+|+..++. +.... |-+.-.| +. .....+++|++.+++. +
T Consensus 38 ~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~ 117 (515)
T COG2812 38 AHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSE 117 (515)
T ss_pred hhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCcc
Confidence 3557999999999999999999876543 11110 0111111 01 1124568888888874 4
Q ss_pred CCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCCCCHHH
Q 004584 593 SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDD 672 (744)
Q Consensus 593 ~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~~~~~ 672 (744)
+.+.|.+|||+|.|. ....++||..|+..| ..|.+|-+|..+..+....+ +| ++++.|..++.++
T Consensus 118 ~ryKVyiIDEvHMLS----------~~afNALLKTLEEPP---~hV~FIlATTe~~Kip~TIl-SR-cq~f~fkri~~~~ 182 (515)
T COG2812 118 GRYKVYIIDEVHMLS----------KQAFNALLKTLEEPP---SHVKFILATTEPQKIPNTIL-SR-CQRFDFKRLDLEE 182 (515)
T ss_pred ccceEEEEecHHhhh----------HHHHHHHhcccccCc---cCeEEEEecCCcCcCchhhh-hc-cccccccCCCHHH
Confidence 567899999999984 667777777666654 36777777777777766444 33 5688999999887
Q ss_pred HHHHHHH----ccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHH
Q 004584 673 AKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 739 (744)
Q Consensus 673 ~~~Il~~----~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~ 739 (744)
+...|+. .+...+++...++++.+.|++|..+.+++.|..... ..||.+.+++.+.
T Consensus 183 I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~-----------~~It~~~v~~~lG 242 (515)
T COG2812 183 IAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGE-----------GEITLESVRDMLG 242 (515)
T ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccC-----------CcccHHHHHHHhC
Confidence 7776665 356788899999999999999999999999988743 4477766665543
No 260
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.25 E-value=1.4e-10 Score=126.08 Aligned_cols=178 Identities=21% Similarity=0.266 Sum_probs=115.4
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhcCCCEEEEccccc----ccccchhhHhhHHHHHHHHH----hcCCCeEEEEeccch
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES----MIGLHESTKCAQIVKVFEDA----YKSPLSIIILDDIER 605 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~----~~g~~~~~~~~~i~~if~~a----~~~~~~il~iDEid~ 605 (744)
..++||+||||||||++|+++|..++.+|+.+.+... ++|... ...+..++..+ ....++||||||||+
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~---e~~L~~~~~~~~~~l~~a~~gIV~lDEIdk 192 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDV---ENILLKLLQAADYDVEKAQKGIIYIDEIDK 192 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccH---HHHHHHHHHhCcccHHhcccceEEecccch
Confidence 4689999999999999999999999999988865543 233322 12333443322 234678999999999
Q ss_pred hhccCCC---Ccch-hHHHHHHHHHHhccCC----CC------CCcEEEEEeCCCC------------------------
Q 004584 606 LLEYVPI---GPRF-SNIISQTMLVLLKRLP----PK------GKKLLVIGTTSEV------------------------ 647 (744)
Q Consensus 606 l~~~~~~---g~~~-~~~~~~~Ll~~l~~~~----~~------~~~v~vi~~tn~~------------------------ 647 (744)
+...+.. +... ...+++.||..|++.. +. ....++|.|+|-.
T Consensus 193 l~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~g 272 (413)
T TIGR00382 193 ISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIG 272 (413)
T ss_pred hchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhcccc
Confidence 9864321 1111 2368888998886532 11 1245666666651
Q ss_pred ---C----------CCC------------ccccccccceEEEcCCCCHHHHHHHHHHc---------------c---CCC
Q 004584 648 ---S----------FLD------------SVGICDAFSVTYHVPTLKTDDAKKVLKQL---------------N---VFA 684 (744)
Q Consensus 648 ---~----------~l~------------~~~l~~rf~~~i~~p~~~~~~~~~Il~~~---------------~---~~~ 684 (744)
+ .+. ...+.+|++.++.|.+++.+++.+|+... + .++
T Consensus 273 f~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t 352 (413)
T TIGR00382 273 FGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFE 352 (413)
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEC
Confidence 0 000 01244899999999999999999998741 0 244
Q ss_pred HHHHHHHHHhCC--CCcHHHHHHHHHHHHhcc
Q 004584 685 EEDVDSASEALN--DMPIKKLYMLIEMAAQGE 714 (744)
Q Consensus 685 ~~~~~~~~~~~~--~g~ir~l~~~l~~a~~~a 714 (744)
++-+..++.... ..++|.+..+++......
T Consensus 353 ~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~ 384 (413)
T TIGR00382 353 EEALKAIAKKALERKTGARGLRSIVEGLLLDV 384 (413)
T ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHhhHHH
Confidence 555555555432 677888888887765543
No 261
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.25 E-value=4.2e-11 Score=127.97 Aligned_cols=171 Identities=20% Similarity=0.225 Sum_probs=120.1
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhh----cCCCEEEEccccc--------ccccchhh---HhhHHHHHHHHHhcCCCe
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGID----SDFPFVKIISAES--------MIGLHEST---KCAQIVKVFEDAYKSPLS 596 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~----~~~~~i~v~~~~~--------~~g~~~~~---~~~~i~~if~~a~~~~~~ 596 (744)
....+||++|++||||+.+|+.++.. .+.|||+++|+.. ++|+-.+. ....-..+|+.|.. +
T Consensus 99 p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---G 175 (403)
T COG1221 99 PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---G 175 (403)
T ss_pred CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeecccCCcCchheecCC---C
Confidence 34478999999999999999999854 3679999999875 23322221 11122346666654 6
Q ss_pred EEEEeccchhhccCCCCcchhHHHHHHHHHHhccCC--------CCCCcEEEEEeCCCC--CCCCc--cccccccceEEE
Q 004584 597 IIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP--------PKGKKLLVIGTTSEV--SFLDS--VGICDAFSVTYH 664 (744)
Q Consensus 597 il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--------~~~~~v~vi~~tn~~--~~l~~--~~l~~rf~~~i~ 664 (744)
.||+|||+.|. -..+..|+..|+.-. +...+|.+|+||+.. +.+-. ...+.++...|.
T Consensus 176 tLfLDEI~~LP----------~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~ 245 (403)
T COG1221 176 TLFLDEIHRLP----------PEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNILTIT 245 (403)
T ss_pred EEehhhhhhCC----------HhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhhhcCceec
Confidence 89999999985 567778888887732 123478999999864 22222 233357888999
Q ss_pred cCCCC--HHHHHHHHHHc------------cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhccc
Q 004584 665 VPTLK--TDDAKKVLKQL------------NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQ 715 (744)
Q Consensus 665 ~p~~~--~~~~~~Il~~~------------~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~ 715 (744)
+||+. .+|+..+++++ ....++-+..+.++.++||+|++.+.++++...+.
T Consensus 246 LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 246 LPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred CCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 99999 67777777652 13334556666777779999999999999988764
No 262
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.25 E-value=4.2e-11 Score=137.36 Aligned_cols=202 Identities=19% Similarity=0.223 Sum_probs=127.5
Q ss_pred cceeecCcchhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEcccccc--------
Q 004584 503 NGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESM-------- 571 (744)
Q Consensus 503 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~~-------- 571 (744)
.++++....+.++.+.+.... ....+|||+|++|||||++|++++..+ +.+|+.++|...-
T Consensus 196 ~~liG~s~~~~~~~~~~~~~a--------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~l 267 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVVA--------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESEL 267 (534)
T ss_pred CceEECCHHHHHHHHHHHHHh--------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHH
Confidence 456666554544444443332 235679999999999999999999875 5699999987641
Q ss_pred cccchhhHhhHH---HHHHHHHhcCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCC--C-C-----CCcEEE
Q 004584 572 IGLHESTKCAQI---VKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP--P-K-----GKKLLV 640 (744)
Q Consensus 572 ~g~~~~~~~~~i---~~if~~a~~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--~-~-----~~~v~v 640 (744)
+|...+...... ...|..| ..++||||||+.|. ..++..|+..++.-. . . ..++.+
T Consensus 268 fg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~----------~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~ri 334 (534)
T TIGR01817 268 FGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEIS----------PAFQAKLLRVLQEGEFERVGGNRTLKVDVRL 334 (534)
T ss_pred cCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCC----------HHHHHHHHHHHhcCcEEECCCCceEeecEEE
Confidence 121110000000 0112222 34789999999984 567777887775421 0 0 125788
Q ss_pred EEeCCCCC--CCCcc----cccccc-ceEEEcCCCC--HHHHHHHHHHc-----------cCCCHHHHHHHHHhCCCCcH
Q 004584 641 IGTTSEVS--FLDSV----GICDAF-SVTYHVPTLK--TDDAKKVLKQL-----------NVFAEEDVDSASEALNDMPI 700 (744)
Q Consensus 641 i~~tn~~~--~l~~~----~l~~rf-~~~i~~p~~~--~~~~~~Il~~~-----------~~~~~~~~~~~~~~~~~g~i 700 (744)
|++|+..- .+... .+..|+ ...|.+||+. .+|+..+++++ ..++++.+..+..+-++||+
T Consensus 335 I~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNv 414 (534)
T TIGR01817 335 VAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNV 414 (534)
T ss_pred EEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChH
Confidence 88887641 11111 122344 3578999998 78888887763 13556566666666679999
Q ss_pred HHHHHHHHHHHhcccCCcccccccCCCCcchhhHH
Q 004584 701 KKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFY 735 (744)
Q Consensus 701 r~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~ 735 (744)
|+|.++++.|...+.. ..|+.+|+.
T Consensus 415 rEL~~v~~~a~~~~~~----------~~I~~~~l~ 439 (534)
T TIGR01817 415 RELENCLERTATLSRS----------GTITRSDFS 439 (534)
T ss_pred HHHHHHHHHHHHhCCC----------CcccHHHCc
Confidence 9999999999877532 346666653
No 263
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.24 E-value=8.8e-11 Score=132.15 Aligned_cols=169 Identities=18% Similarity=0.187 Sum_probs=111.2
Q ss_pred ceeeeeecCCCCChhHHHHHHHhh-----------cCCCEEEEccccc--------ccccchhhHhhH----HHHHHHHH
Q 004584 534 LVTCLLEGPSGSGKTALAATAGID-----------SDFPFVKIISAES--------MIGLHESTKCAQ----IVKVFEDA 590 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~-----------~~~~~i~v~~~~~--------~~g~~~~~~~~~----i~~if~~a 590 (744)
..+|||+|++||||+++|++++.. .+.||+.++|... ++|+.++..... -..+|+.|
T Consensus 242 ~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A 321 (538)
T PRK15424 242 SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 321 (538)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCccccccCccccccCCchhcc
Confidence 468999999999999999999877 4679999998853 244332211111 11355555
Q ss_pred hcCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCC--------CCCCcEEEEEeCCCCC--CCCccccc----
Q 004584 591 YKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP--------PKGKKLLVIGTTSEVS--FLDSVGIC---- 656 (744)
Q Consensus 591 ~~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--------~~~~~v~vi~~tn~~~--~l~~~~l~---- 656 (744)
. .+.||||||+.|. ..+|..|+..|+.-. ....++.+|++|+..- ......++
T Consensus 322 ~---gGTLfLdeI~~Lp----------~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~ 388 (538)
T PRK15424 322 H---GGTLFLDEIGEMP----------LPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLF 388 (538)
T ss_pred C---CCEEEEcChHhCC----------HHHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHH
Confidence 3 3679999999984 667778888776521 1123568999987751 12211122
Q ss_pred ccc-ceEEEcCCCC--HHHHHHHHHHc--------c-CCCHHHH-------HHHHHhCCCCcHHHHHHHHHHHHhccc
Q 004584 657 DAF-SVTYHVPTLK--TDDAKKVLKQL--------N-VFAEEDV-------DSASEALNDMPIKKLYMLIEMAAQGEQ 715 (744)
Q Consensus 657 ~rf-~~~i~~p~~~--~~~~~~Il~~~--------~-~~~~~~~-------~~~~~~~~~g~ir~l~~~l~~a~~~a~ 715 (744)
.|+ ...|++||+. .+|+..+++++ + .++++.+ ..+..+-++||+|+|.+++++++....
T Consensus 389 yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~ 466 (538)
T PRK15424 389 YRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLS 466 (538)
T ss_pred HHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcC
Confidence 222 2678999999 67888887753 1 2333322 344455579999999999999887543
No 264
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.24 E-value=1e-10 Score=131.85 Aligned_cols=168 Identities=21% Similarity=0.217 Sum_probs=113.1
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEccccc--------ccccchhhHhh----HHHHHHHHHhcCCCeEE
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES--------MIGLHESTKCA----QIVKVFEDAYKSPLSII 598 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~--------~~g~~~~~~~~----~i~~if~~a~~~~~~il 598 (744)
..+|||+|++||||+++|++++..+ +.||+.++|... ++|+.++.... .-..+|+.|. .+.|
T Consensus 235 ~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTL 311 (526)
T TIGR02329 235 DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTL 311 (526)
T ss_pred CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhcC---CceE
Confidence 4689999999999999999999764 579999998753 23432221110 1123455543 3679
Q ss_pred EEeccchhhccCCCCcchhHHHHHHHHHHhccCC--------CCCCcEEEEEeCCCCC--CCCccccc----ccc-ceEE
Q 004584 599 ILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP--------PKGKKLLVIGTTSEVS--FLDSVGIC----DAF-SVTY 663 (744)
Q Consensus 599 ~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--------~~~~~v~vi~~tn~~~--~l~~~~l~----~rf-~~~i 663 (744)
|||||+.|. ..++..|+..|+.-. ....++.+|++|+..- ......++ .|+ ...|
T Consensus 312 fLdeI~~Lp----------~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I 381 (526)
T TIGR02329 312 FLDEIGEMP----------LPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRI 381 (526)
T ss_pred EecChHhCC----------HHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEE
Confidence 999999984 667777887776421 1112467888887752 22222222 344 3678
Q ss_pred EcCCCC--HHHHHHHHHHc--------c-CCCHHHHHH-------HHHhCCCCcHHHHHHHHHHHHhcc
Q 004584 664 HVPTLK--TDDAKKVLKQL--------N-VFAEEDVDS-------ASEALNDMPIKKLYMLIEMAAQGE 714 (744)
Q Consensus 664 ~~p~~~--~~~~~~Il~~~--------~-~~~~~~~~~-------~~~~~~~g~ir~l~~~l~~a~~~a 714 (744)
++||+. .+|+..+++++ + .++++.+.. +..+-++||+|+|.++++++....
T Consensus 382 ~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 382 ALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALEL 450 (526)
T ss_pred eCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 999999 67888887763 1 355554444 556667999999999999988753
No 265
>PRK06620 hypothetical protein; Validated
Probab=99.24 E-value=2.3e-10 Score=114.67 Aligned_cols=182 Identities=13% Similarity=0.230 Sum_probs=115.1
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCC-CceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccc
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKH-VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE 290 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~-~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~ 290 (744)
+.++|++.-+|.-.+..-..++++... ++..+ .+.++||||||||||++++++++..+. .++....
T Consensus 11 ~~~tfd~Fvvg~~N~~a~~~~~~~~~~----------~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~---~~~~~~~ 77 (214)
T PRK06620 11 SKYHPDEFIVSSSNDQAYNIIKNWQCG----------FGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNA---YIIKDIF 77 (214)
T ss_pred CCCCchhhEecccHHHHHHHHHHHHHc----------cccCCCcceEEEECCCCCCHHHHHHHHHhccCC---EEcchhh
Confidence 677899886777455444443554321 12222 267999999999999999999887631 2222111
Q ss_pred hhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEE
Q 004584 291 VLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLL 370 (744)
Q Consensus 291 l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~v 370 (744)
. ..+.+. . ..+|+|||||.+. +..+..+++.+ ...+..++
T Consensus 78 ~-----------~~~~~~----~---------~d~lliDdi~~~~-------------~~~lf~l~N~~---~e~g~~il 117 (214)
T PRK06620 78 F-----------NEEILE----K---------YNAFIIEDIENWQ-------------EPALLHIFNII---NEKQKYLL 117 (214)
T ss_pred h-----------chhHHh----c---------CCEEEEeccccch-------------HHHHHHHHHHH---HhcCCEEE
Confidence 0 011111 1 2499999999541 11222333332 23456778
Q ss_pred EEEeCCCCc--cchhhcCCCccc--eEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHH
Q 004584 371 IGMTNRKDM--LDEALLRPGRLE--VQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVA 446 (744)
Q Consensus 371 I~~tn~~~~--id~al~r~gRf~--~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~ 446 (744)
|+++..|.. + |+|++ |+. ..+++..||.+.+..+++.++.... ...++..++.|+....+ +.+.+.+++
T Consensus 118 its~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~---l~l~~ev~~~L~~~~~~-d~r~l~~~l 190 (214)
T PRK06620 118 LTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISS---VTISRQIIDFLLVNLPR-EYSKIIEIL 190 (214)
T ss_pred EEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHccC-CHHHHHHHH
Confidence 887766655 5 78888 765 3589999999999999988876432 12345568888888876 888888888
Q ss_pred HHHHHHH
Q 004584 447 KSAVSFA 453 (744)
Q Consensus 447 ~~A~~~a 453 (744)
+.....+
T Consensus 191 ~~l~~~~ 197 (214)
T PRK06620 191 ENINYFA 197 (214)
T ss_pred HHHHHHH
Confidence 7754333
No 266
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.24 E-value=1.4e-10 Score=116.79 Aligned_cols=177 Identities=20% Similarity=0.275 Sum_probs=111.6
Q ss_pred HHHhcCCCCceeeeeecCCCCChhHHHHHHHhhc-----CCCEEEEcccccccccc-hhhHhhHHHHHHHHHhcCCCeEE
Q 004584 525 QVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS-----DFPFVKIISAESMIGLH-ESTKCAQIVKVFEDAYKSPLSII 598 (744)
Q Consensus 525 ~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~-----~~~~i~v~~~~~~~g~~-~~~~~~~i~~if~~a~~~~~~il 598 (744)
.+...+......++||||+|+|||++.++++++. +..++.+...+ +.... ..-....+.+ |..... ...+|
T Consensus 25 ~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~-f~~~~~~~~~~~~~~~-~~~~~~-~~DlL 101 (219)
T PF00308_consen 25 AIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEE-FIREFADALRDGEIEE-FKDRLR-SADLL 101 (219)
T ss_dssp HHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHH-HHHHHHHHHHTTSHHH-HHHHHC-TSSEE
T ss_pred HHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHH-HHHHHHHHHHcccchh-hhhhhh-cCCEE
Confidence 3333344455668999999999999999998653 45566664433 22111 1101112223 323333 45899
Q ss_pred EEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCc--cccccccc--eEEEcCCCCHHHHH
Q 004584 599 ILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDS--VGICDAFS--VTYHVPTLKTDDAK 674 (744)
Q Consensus 599 ~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~--~~l~~rf~--~~i~~p~~~~~~~~ 674 (744)
+||+++.+.+ ....+..|..+++.....++ -+|+++...|..+.. ..+++||. ..+.+.+|+.+++.
T Consensus 102 ~iDDi~~l~~--------~~~~q~~lf~l~n~~~~~~k-~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~ 172 (219)
T PF00308_consen 102 IIDDIQFLAG--------KQRTQEELFHLFNRLIESGK-QLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRR 172 (219)
T ss_dssp EEETGGGGTT--------HHHHHHHHHHHHHHHHHTTS-EEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHH
T ss_pred EEecchhhcC--------chHHHHHHHHHHHHHHhhCC-eEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHH
Confidence 9999999862 24466777777777644444 456656566665542 25678876 58899999999999
Q ss_pred HHHHHc----cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhc
Q 004584 675 KVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQG 713 (744)
Q Consensus 675 ~Il~~~----~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~ 713 (744)
+|+++. +...++++...+....+.++|.+..++......
T Consensus 173 ~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l~~~ 215 (219)
T PF00308_consen 173 RILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALNRLDAY 215 (219)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 999973 566788899988888899999999988876544
No 267
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.7e-10 Score=117.23 Aligned_cols=144 Identities=17% Similarity=0.266 Sum_probs=99.8
Q ss_pred CeEEEEeccchhhccCCCCc-chhH-HHHHHHHHHhccCC-------CCCCcEEEEEeC----CCCCCCCccccccccce
Q 004584 595 LSIIILDDIERLLEYVPIGP-RFSN-IISQTMLVLLKRLP-------PKGKKLLVIGTT----SEVSFLDSVGICDAFSV 661 (744)
Q Consensus 595 ~~il~iDEid~l~~~~~~g~-~~~~-~~~~~Ll~~l~~~~-------~~~~~v~vi~~t----n~~~~l~~~~l~~rf~~ 661 (744)
.+|+||||||+++...+.|+ ..|. -+|+-||.++++-. -....++|||+. +.|..|-| .|.+||.-
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiP-ELQGRfPI 329 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIP-ELQGRFPI 329 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcCh-hhcCCCce
Confidence 57999999999998776554 4554 57888888887742 223468888665 34545555 67799999
Q ss_pred EEEcCCCCHHHHHHHHHHc------------------cCCCHHHHHHHHHhC-------CCCcHHHHHHHHHHHHhcccC
Q 004584 662 TYHVPTLKTDDAKKVLKQL------------------NVFAEEDVDSASEAL-------NDMPIKKLYMLIEMAAQGEQG 716 (744)
Q Consensus 662 ~i~~p~~~~~~~~~Il~~~------------------~~~~~~~~~~~~~~~-------~~g~ir~l~~~l~~a~~~a~~ 716 (744)
++++.+++.+++..||... -.|+++.+.+++... .+.++|+|..+++...+.-+-
T Consensus 330 RVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlLediSF 409 (444)
T COG1220 330 RVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLLEDISF 409 (444)
T ss_pred EEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhCc
Confidence 9999999999999999852 157777666554332 289999999999887664321
Q ss_pred CcccccccC-CCCcchhhHHHHHHHH
Q 004584 717 GAAEAIYSG-REKIKISHFYDCLQDM 741 (744)
Q Consensus 717 ~~~~a~~~g-~~~It~e~~~~al~~~ 741 (744)
. +....| .-.|+.+-+.+-+.++
T Consensus 410 e--A~d~~g~~v~Id~~yV~~~l~~l 433 (444)
T COG1220 410 E--APDMSGQKVTIDAEYVEEKLGDL 433 (444)
T ss_pred c--CCcCCCCeEEEcHHHHHHHHHHH
Confidence 1 011122 2357887777777654
No 268
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.23 E-value=1.6e-10 Score=123.95 Aligned_cols=200 Identities=16% Similarity=0.203 Sum_probs=136.4
Q ss_pred HHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcC-----CCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeE
Q 004584 523 VEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSD-----FPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSI 597 (744)
Q Consensus 523 ~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~-----~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~i 597 (744)
...+...+..+...++||||+|+|||+|++++++... ..++.+ .++.+......+....-.+-|++-| ...+
T Consensus 102 ~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~-~se~f~~~~v~a~~~~~~~~Fk~~y--~~dl 178 (408)
T COG0593 102 AKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL-TSEDFTNDFVKALRDNEMEKFKEKY--SLDL 178 (408)
T ss_pred HHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEec-cHHHHHHHHHHHHHhhhHHHHHHhh--ccCe
Confidence 3344444545678899999999999999999997652 234444 3333322222211112234566666 4579
Q ss_pred EEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCc--cccccccc--eEEEcCCCCHHHH
Q 004584 598 IILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDS--VGICDAFS--VTYHVPTLKTDDA 673 (744)
Q Consensus 598 l~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~--~~l~~rf~--~~i~~p~~~~~~~ 673 (744)
++||+|+.+.+. +..+..+...++.+...++ -+|+.+...|..+.. ..+++||. ..+.+.+|+.+.+
T Consensus 179 llIDDiq~l~gk--------~~~qeefFh~FN~l~~~~k-qIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r 249 (408)
T COG0593 179 LLIDDIQFLAGK--------ERTQEEFFHTFNALLENGK-QIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETR 249 (408)
T ss_pred eeechHhHhcCC--------hhHHHHHHHHHHHHHhcCC-EEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHH
Confidence 999999999732 3446666666666655554 345544444554442 26778886 6789999999999
Q ss_pred HHHHHHc----cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHHHHh
Q 004584 674 KKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDMV 742 (744)
Q Consensus 674 ~~Il~~~----~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~~~~ 742 (744)
..||++. +...++|+...++..-..++|++..+++.....+.. ....||.+.+.++|.+..
T Consensus 250 ~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~--------~~~~iTi~~v~e~L~~~~ 314 (408)
T COG0593 250 LAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALF--------TKRAITIDLVKEILKDLL 314 (408)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh--------cCccCcHHHHHHHHHHhh
Confidence 9999973 577788999999988899999999998877666543 223688888888887764
No 269
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=3.1e-10 Score=129.69 Aligned_cols=200 Identities=17% Similarity=0.197 Sum_probs=131.8
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE-------
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI------- 285 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~------- 285 (744)
.-+|++ |.|.+..++.+ ++++... +.+..+||+||+|||||++|+.+|+.+.+.....
T Consensus 12 P~~f~e--ivGQe~i~~~L-~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 12 PSKFAD--ITAQEHITHTI-QNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 456888 89999988877 6666432 2344699999999999999999999997632100
Q ss_pred --ec---ccc---hh-------cccccc---hHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCcc
Q 004584 286 --VN---GPE---VL-------SKFVGE---TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGV 347 (744)
Q Consensus 286 --v~---~~~---l~-------~~~~g~---~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~ 347 (744)
-. |.. +. ..+.|. ....++++.+.+.. .|..+ ...|++|||+|.+.
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~-~P~~~---~~KVvIIdEad~Lt------------ 140 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRY-GPQKG---RYRVYIIDEVHMLS------------ 140 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHh-hhhcC---CCEEEEEeChhhcC------------
Confidence 00 100 00 011121 23456666555532 22222 23599999999874
Q ss_pred HHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccH
Q 004584 348 HDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNL 427 (744)
Q Consensus 348 ~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l 427 (744)
....+.||..|+. ....+++|.+|+.+..|.+.+++ |.. .++|..++.++....++..+++... -.++..+
T Consensus 141 -~~a~naLLK~LEe--Pp~~tv~IL~t~~~~kLl~TI~S--Rc~-~vef~~l~~~ei~~~L~~i~~~egi---~I~~eal 211 (620)
T PRK14954 141 -TAAFNAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLDEIQSQLQMICRAEGI---QIDADAL 211 (620)
T ss_pred -HHHHHHHHHHHhC--CCCCeEEEEEeCChhhhhHHHHh--hce-EEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHH
Confidence 2345678888874 33456777777778889899988 553 7899999999888888776654331 1345567
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHH
Q 004584 428 QELAARTKNYSGAELEGVAKSAVSFA 453 (744)
Q Consensus 428 ~~la~~t~g~sg~dl~~l~~~A~~~a 453 (744)
+.++..+.| +.+++.+.++....++
T Consensus 212 ~~La~~s~G-dlr~al~eLeKL~~y~ 236 (620)
T PRK14954 212 QLIARKAQG-SMRDAQSILDQVIAFS 236 (620)
T ss_pred HHHHHHhCC-CHHHHHHHHHHHHHhc
Confidence 888888876 6666666666655444
No 270
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.23 E-value=2.8e-10 Score=131.30 Aligned_cols=231 Identities=21% Similarity=0.270 Sum_probs=134.1
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhc---------CCCc
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---------GMEP 283 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~---------~~~~ 283 (744)
.-+|++ |.|.+..++.+. +.+.. ..+.+++|+||||||||++|+++++... ..++
T Consensus 150 p~~~~~--iiGqs~~~~~l~-~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~f 213 (615)
T TIGR02903 150 PRAFSE--IVGQERAIKALL-AKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPF 213 (615)
T ss_pred cCcHHh--ceeCcHHHHHHH-HHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCe
Confidence 346777 899999988873 33322 2245799999999999999999987662 2356
Q ss_pred EEecccchh-------cccccchHHH----HHHHHHHHHhcccccC--CCCCeeEEEEcCcchhcccCCCCCCCCccHHH
Q 004584 284 KIVNGPEVL-------SKFVGETEKN----IRDLFADAENDQRTRG--DQSDLHVIIFDEIDAICKSRGSTRDGTGVHDS 350 (744)
Q Consensus 284 ~~v~~~~l~-------~~~~g~~~~~----i~~~f~~a~~~~~~~~--~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~ 350 (744)
..++|..+- ..++|..... .+..++......+..+ ......+|||||++.|-+.
T Consensus 214 v~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~------------- 280 (615)
T TIGR02903 214 VEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL------------- 280 (615)
T ss_pred EEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH-------------
Confidence 677776541 1111211110 0111110000000000 0001239999999987421
Q ss_pred HHHHHHHhccCc--------------------------cCCCcEEEEEEe-CCCCccchhhcCCCccceEEEEcCCCHHH
Q 004584 351 IVNQLLTKIDGV--------------------------ESLNNVLLIGMT-NRKDMLDEALLRPGRLEVQVEISLPDENG 403 (744)
Q Consensus 351 ~~~~LL~~~d~~--------------------------~~~~~v~vI~~t-n~~~~id~al~r~gRf~~~i~i~~Pd~~~ 403 (744)
....|+..++.- ....++++|++| +.++.+++++++ ||. .+.+++++.++
T Consensus 281 ~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~ed 357 (615)
T TIGR02903 281 LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPED 357 (615)
T ss_pred HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHH
Confidence 222333333210 012246666655 557889999988 887 57899999999
Q ss_pred HHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHH
Q 004584 404 RLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHAL 483 (744)
Q Consensus 404 r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al 483 (744)
..+|++..+.+... .+ ++..++.+++.+. .++...+++..+...+..+.... ........|+.+|+.+++
T Consensus 358 i~~Il~~~a~~~~v--~l-s~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~-----~~~~~~~~I~~edv~~~l 427 (615)
T TIGR02903 358 IALIVLNAAEKINV--HL-AAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEA-----GKENDKVTITQDDVYEVI 427 (615)
T ss_pred HHHHHHHHHHHcCC--CC-CHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHh-----ccCCCCeeECHHHHHHHh
Confidence 99999998876431 12 3344566666553 56666666666665554433200 001224679999999988
Q ss_pred hh
Q 004584 484 YE 485 (744)
Q Consensus 484 ~~ 485 (744)
..
T Consensus 428 ~~ 429 (615)
T TIGR02903 428 QI 429 (615)
T ss_pred CC
Confidence 74
No 271
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=4.3e-10 Score=129.64 Aligned_cols=181 Identities=17% Similarity=0.200 Sum_probs=115.5
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhcCCCEEEE-----------------cccccc-cccchhhHhhHHHHHHHHHh---
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVKI-----------------ISAESM-IGLHESTKCAQIVKVFEDAY--- 591 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v-----------------~~~~~~-~g~~~~~~~~~i~~if~~a~--- 591 (744)
.+..+||+||+|+|||++|+.+|+...+..-.- ..++.+ +......+.+.++++.+.+.
T Consensus 37 i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p 116 (585)
T PRK14950 37 VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRP 116 (585)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCc
Confidence 345579999999999999999997754211000 000100 00001122345666655443
Q ss_pred -cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCCCCH
Q 004584 592 -KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKT 670 (744)
Q Consensus 592 -~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~~~ 670 (744)
.....|+||||+|.|. ...++.|+..|+..+. ..+||.+++..+.+.+ .+++|+ ..++|++++.
T Consensus 117 ~~~~~kVvIIDEa~~L~----------~~a~naLLk~LEepp~---~tv~Il~t~~~~kll~-tI~SR~-~~i~f~~l~~ 181 (585)
T PRK14950 117 ALARYKVYIIDEVHMLS----------TAAFNALLKTLEEPPP---HAIFILATTEVHKVPA-TILSRC-QRFDFHRHSV 181 (585)
T ss_pred ccCCeEEEEEeChHhCC----------HHHHHHHHHHHhcCCC---CeEEEEEeCChhhhhH-HHHhcc-ceeeCCCCCH
Confidence 2446799999999884 4566778888877542 3444445555544433 344554 5789999998
Q ss_pred HHHHHHHHHc----cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHH
Q 004584 671 DDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 739 (744)
Q Consensus 671 ~~~~~Il~~~----~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~ 739 (744)
.++..+++.. +...+++....+...++|++|.+++.++..... +...||.+++.+++.
T Consensus 182 ~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~y-----------~~~~It~e~V~~ll~ 243 (585)
T PRK14950 182 ADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATT-----------YGGEISLSQVQSLLG 243 (585)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-----------cCCCCCHHHHHHHhc
Confidence 8888777753 444566777778888899999999999976543 123588888766543
No 272
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.22 E-value=1.4e-10 Score=124.08 Aligned_cols=169 Identities=16% Similarity=0.185 Sum_probs=113.2
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEcccccc--------cccchhhH---hhHHHHHHHHHhcCCCeEEE
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESM--------IGLHESTK---CAQIVKVFEDAYKSPLSIII 599 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~~--------~g~~~~~~---~~~i~~if~~a~~~~~~il~ 599 (744)
..+|||+|++||||+++|++++..+ +.+|+.++|...- +|...+.. .......|..| ..+.||
T Consensus 29 ~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~ 105 (326)
T PRK11608 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLF 105 (326)
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhcc---CCCeEE
Confidence 4679999999999999999998765 4689999988631 12110000 00001233333 347899
Q ss_pred EeccchhhccCCCCcchhHHHHHHHHHHhccCC--C------CCCcEEEEEeCCCC-C-CCCc----ccccccc-ceEEE
Q 004584 600 LDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP--P------KGKKLLVIGTTSEV-S-FLDS----VGICDAF-SVTYH 664 (744)
Q Consensus 600 iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--~------~~~~v~vi~~tn~~-~-~l~~----~~l~~rf-~~~i~ 664 (744)
||||+.|. ..+++.|+.+++.-. . ...++.||++|+.. . +... ..+..|| ...|.
T Consensus 106 l~~i~~L~----------~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~ 175 (326)
T PRK11608 106 LDELATAP----------MLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQ 175 (326)
T ss_pred eCChhhCC----------HHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEE
Confidence 99999984 567778888776521 1 11257888888763 1 1111 1334566 46899
Q ss_pred cCCCC--HHHHHHHHHHc-------------cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhccc
Q 004584 665 VPTLK--TDDAKKVLKQL-------------NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQ 715 (744)
Q Consensus 665 ~p~~~--~~~~~~Il~~~-------------~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~ 715 (744)
+||+. .+|+..+++++ ..++++.+..+..+-++||+|+|.++++.|...+.
T Consensus 176 lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~~~ 241 (326)
T PRK11608 176 LPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 (326)
T ss_pred CCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC
Confidence 99999 67888887752 13556666666677779999999999999987543
No 273
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.21 E-value=8.3e-11 Score=137.95 Aligned_cols=169 Identities=19% Similarity=0.207 Sum_probs=110.5
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEccccc--------ccccchhhHhhHHHHHHHHHhcCCCeEEEEec
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES--------MIGLHESTKCAQIVKVFEDAYKSPLSIIILDD 602 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~--------~~g~~~~~~~~~i~~if~~a~~~~~~il~iDE 602 (744)
..++||+|++||||+++|++++..+ +.+|+.++|... ++|+..+.....-...|+.| ..+.|||||
T Consensus 348 ~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~lde 424 (638)
T PRK11388 348 SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEK 424 (638)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcC
Confidence 4569999999999999999999875 469999998764 22321110000001123333 347899999
Q ss_pred cchhhccCCCCcchhHHHHHHHHHHhccCC--C-C-----CCcEEEEEeCCCCC--CCCccc----ccccc-ceEEEcCC
Q 004584 603 IERLLEYVPIGPRFSNIISQTMLVLLKRLP--P-K-----GKKLLVIGTTSEVS--FLDSVG----ICDAF-SVTYHVPT 667 (744)
Q Consensus 603 id~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--~-~-----~~~v~vi~~tn~~~--~l~~~~----l~~rf-~~~i~~p~ 667 (744)
|+.|. ..++..|+..++.-. . . ..++.+|++|+..- +..... +..|+ ...|.+||
T Consensus 425 i~~l~----------~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPp 494 (638)
T PRK11388 425 VEYLS----------PELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPP 494 (638)
T ss_pred hhhCC----------HHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCC
Confidence 99984 567777887775421 0 1 12577898888641 111111 11222 46789999
Q ss_pred CC--HHHHHHHHHHc--------c---CCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhccc
Q 004584 668 LK--TDDAKKVLKQL--------N---VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQ 715 (744)
Q Consensus 668 ~~--~~~~~~Il~~~--------~---~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~ 715 (744)
+. .+|+..+++++ + .++++.+..+..+-++||+|+|.++++.|...++
T Consensus 495 LreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~~~ 555 (638)
T PRK11388 495 LRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSSD 555 (638)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHhCC
Confidence 99 57888877763 1 3455555555666679999999999999887654
No 274
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.20 E-value=9.3e-10 Score=118.18 Aligned_cols=209 Identities=16% Similarity=0.174 Sum_probs=130.2
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCC----cEEecc
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME----PKIVNG 288 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~----~~~v~~ 288 (744)
+.+|++ +.|.++.++.+ +.++... ...+++|+||||||||++++++++.+.+.. +..+++
T Consensus 13 P~~~~~--~~g~~~~~~~l-~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~ 76 (319)
T PRK00440 13 PRTLDE--IVGQEEIVERL-KSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNA 76 (319)
T ss_pred CCcHHH--hcCcHHHHHHH-HHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecc
Confidence 356788 88999988887 6555321 122589999999999999999999984321 222322
Q ss_pred cchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcE
Q 004584 289 PEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNV 368 (744)
Q Consensus 289 ~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v 368 (744)
++. .....+++.+.......|.. ...+.+|+|||+|.+.. ...+.|+..++.... +.
T Consensus 77 ~~~------~~~~~~~~~i~~~~~~~~~~--~~~~~vviiDe~~~l~~-------------~~~~~L~~~le~~~~--~~ 133 (319)
T PRK00440 77 SDE------RGIDVIRNKIKEFARTAPVG--GAPFKIIFLDEADNLTS-------------DAQQALRRTMEMYSQ--NT 133 (319)
T ss_pred ccc------cchHHHHHHHHHHHhcCCCC--CCCceEEEEeCcccCCH-------------HHHHHHHHHHhcCCC--CC
Confidence 211 11122333333333322221 12356999999998742 123445555554333 45
Q ss_pred EEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHH
Q 004584 369 LLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKS 448 (744)
Q Consensus 369 ~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~ 448 (744)
.+|.++|.+..+.+++.+ |+. .++|++++.++...+++.++++... ..++..+..+++.+.| +.+.+.+.++.
T Consensus 134 ~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~---~i~~~al~~l~~~~~g-d~r~~~~~l~~ 206 (319)
T PRK00440 134 RFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGI---EITDDALEAIYYVSEG-DMRKAINALQA 206 (319)
T ss_pred eEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 566677877778788887 765 5899999999999999988875432 1344568888888765 55555555554
Q ss_pred HHHHHHHhccccCCCCCCCccccceeehhHHHHHHhh
Q 004584 449 AVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYE 485 (744)
Q Consensus 449 A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~ 485 (744)
++.. ...||.+++..+...
T Consensus 207 ~~~~------------------~~~it~~~v~~~~~~ 225 (319)
T PRK00440 207 AAAT------------------GKEVTEEAVYKITGT 225 (319)
T ss_pred HHHc------------------CCCCCHHHHHHHhCC
Confidence 4321 124777777766544
No 275
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.20 E-value=2.1e-10 Score=127.01 Aligned_cols=164 Identities=18% Similarity=0.243 Sum_probs=116.0
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHhhHHHHHHHHH--------hcCCCeEEEEeccc
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDA--------YKSPLSIIILDDIE 604 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a--------~~~~~~il~iDEid 604 (744)
+.+-+||+||||.|||++|+.+|+.+|+..+.++.++.-.+ ..+++....| ..+.|.+|++||||
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~-------~~v~~kI~~avq~~s~l~adsrP~CLViDEID 397 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTA-------PMVKEKIENAVQNHSVLDADSRPVCLVIDEID 397 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccH-------HHHHHHHHHHHhhccccccCCCcceEEEeccc
Confidence 34667899999999999999999999999999988875322 2333333332 13678999999999
Q ss_pred hhhccCCCCcchhHHHHHHHHHHhccCC-----CCCC-------------cEEEEEeCCCCCCCCccccc--cccceEEE
Q 004584 605 RLLEYVPIGPRFSNIISQTMLVLLKRLP-----PKGK-------------KLLVIGTTSEVSFLDSVGIC--DAFSVTYH 664 (744)
Q Consensus 605 ~l~~~~~~g~~~~~~~~~~Ll~~l~~~~-----~~~~-------------~v~vi~~tn~~~~l~~~~l~--~rf~~~i~ 664 (744)
--. .....+++.+++.-. .+.. .--|||.+|.. ..| .|+ .-|..+++
T Consensus 398 Ga~----------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaP-aLR~Lr~~A~ii~ 464 (877)
T KOG1969|consen 398 GAP----------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAP-ALRPLRPFAEIIA 464 (877)
T ss_pred CCc----------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cch-hhhhcccceEEEE
Confidence 732 445556666655210 1110 12478888876 334 222 45788899
Q ss_pred cCCCC----HHHHHHHHHHccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccC
Q 004584 665 VPTLK----TDDAKKVLKQLNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQG 716 (744)
Q Consensus 665 ~p~~~----~~~~~~Il~~~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~ 716 (744)
|++|+ .+-+..|+.+.+...+.-....+..++.+|||..++.++..+...+.
T Consensus 465 f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~DIRsCINtLQfLa~~~~r 520 (877)
T KOG1969|consen 465 FVPPSQSRLVERLNEICHRENMRADSKALNALCELTQNDIRSCINTLQFLASNVDR 520 (877)
T ss_pred ecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcchHHHHHHHHHHHHHhccc
Confidence 99888 45566666666777777777888888999999999999998877654
No 276
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.20 E-value=2.1e-10 Score=113.26 Aligned_cols=148 Identities=23% Similarity=0.251 Sum_probs=100.0
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhcCCC------------------------EEEEcccccccccchhhHhhHHHHHH
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFP------------------------FVKIISAESMIGLHESTKCAQIVKVF 587 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~~~~------------------------~i~v~~~~~~~g~~~~~~~~~i~~if 587 (744)
..+..+||+||+|+|||++|+.++...... +..+. +. + ..-+.+.++++.
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~-~~---~--~~~~~~~i~~i~ 85 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLE-PE---G--QSIKVDQVRELV 85 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEec-cc---c--CcCCHHHHHHHH
Confidence 345679999999999999999998764321 11111 10 0 011234666667
Q ss_pred HHHhc----CCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEE
Q 004584 588 EDAYK----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTY 663 (744)
Q Consensus 588 ~~a~~----~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i 663 (744)
+.+.. +...|++|||+|.+. ...++.|+..|+..++ ..++|.+|+.+..+.+ .+++|. ..+
T Consensus 86 ~~~~~~~~~~~~kviiide~~~l~----------~~~~~~Ll~~le~~~~---~~~~il~~~~~~~l~~-~i~sr~-~~~ 150 (188)
T TIGR00678 86 EFLSRTPQESGRRVVIIEDAERMN----------EAAANALLKTLEEPPP---NTLFILITPSPEKLLP-TIRSRC-QVL 150 (188)
T ss_pred HHHccCcccCCeEEEEEechhhhC----------HHHHHHHHHHhcCCCC---CeEEEEEECChHhChH-HHHhhc-EEe
Confidence 66643 456799999999984 4566778888887432 3344445555566655 455665 589
Q ss_pred EcCCCCHHHHHHHHHHccCCCHHHHHHHHHhCCCCcHHH
Q 004584 664 HVPTLKTDDAKKVLKQLNVFAEEDVDSASEALNDMPIKK 702 (744)
Q Consensus 664 ~~p~~~~~~~~~Il~~~~~~~~~~~~~~~~~~~~g~ir~ 702 (744)
+|++++.+++.+++++.+ .+ ++....+...++|++|+
T Consensus 151 ~~~~~~~~~~~~~l~~~g-i~-~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQG-IS-EEAAELLLALAGGSPGA 187 (188)
T ss_pred eCCCCCHHHHHHHHHHcC-CC-HHHHHHHHHHcCCCccc
Confidence 999999999999999874 44 45566677777787765
No 277
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.20 E-value=3.3e-10 Score=120.35 Aligned_cols=170 Identities=23% Similarity=0.344 Sum_probs=100.6
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE------E
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK------I 285 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~------~ 285 (744)
..+.|++ |.|.++.++.++..++. + ...|+||+||||||||++||++++.+.+.... .
T Consensus 3 ~~~~f~~--i~Gq~~~~~~l~~~~~~-~-------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~ 66 (334)
T PRK13407 3 KPFPFSA--IVGQEEMKQAMVLTAID-P-------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNS 66 (334)
T ss_pred CCCCHHH--hCCHHHHHHHHHHHHhc-c-------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhccccccc
Confidence 4677888 99999998877332221 0 11479999999999999999999998421110 0
Q ss_pred --ec-ccch--------hc-------ccccchHHHHH--HHHHHHH-hcc--cccCC--CCCeeEEEEcCcchhcccCCC
Q 004584 286 --VN-GPEV--------LS-------KFVGETEKNIR--DLFADAE-NDQ--RTRGD--QSDLHVIIFDEIDAICKSRGS 340 (744)
Q Consensus 286 --v~-~~~l--------~~-------~~~g~~~~~i~--~~f~~a~-~~~--~~~~~--~~~p~Il~iDEid~l~~~~~~ 340 (744)
+. ++++ .. .-.+.++..+- ..++.+. .+. ...|. .....+||+||++.+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~----- 141 (334)
T PRK13407 67 ARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE----- 141 (334)
T ss_pred CcccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC-----
Confidence 00 0001 00 00000111000 0111110 000 00010 0111399999999874
Q ss_pred CCCCCccHHHHHHHHHHhccCc-----------cCCCcEEEEEEeCCCC-ccchhhcCCCccceEEEEcCCCH-HHHHHH
Q 004584 341 TRDGTGVHDSIVNQLLTKIDGV-----------ESLNNVLLIGMTNRKD-MLDEALLRPGRLEVQVEISLPDE-NGRLQI 407 (744)
Q Consensus 341 ~~~~~~~~~~~~~~LL~~~d~~-----------~~~~~v~vI~~tn~~~-~id~al~r~gRf~~~i~i~~Pd~-~~r~~I 407 (744)
..+...|+..|+.- ....++++|+++|..+ .+++++.. ||...+.++.|.. ++|.+|
T Consensus 142 --------~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~i 211 (334)
T PRK13407 142 --------DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEV 211 (334)
T ss_pred --------HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHH
Confidence 34555566655421 1234689999998755 48999998 9999999998876 899999
Q ss_pred HHHHH
Q 004584 408 LQIHT 412 (744)
Q Consensus 408 l~~~~ 412 (744)
++...
T Consensus 212 l~~~~ 216 (334)
T PRK13407 212 IRRRD 216 (334)
T ss_pred HHHhh
Confidence 98753
No 278
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.18 E-value=5.2e-10 Score=132.08 Aligned_cols=170 Identities=21% Similarity=0.241 Sum_probs=114.3
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEccccc--------ccccchhhH---hhHHHHHHHHHhcCCCeEEE
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES--------MIGLHESTK---CAQIVKVFEDAYKSPLSIII 599 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~--------~~g~~~~~~---~~~i~~if~~a~~~~~~il~ 599 (744)
..+|||+|++|||||++|++++..+ +.+|+.++|... ++|...+.. ...-...|..| ..++||
T Consensus 399 ~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~ 475 (686)
T PRK15429 399 DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELA---DKSSLF 475 (686)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcccccccccccchhhHHHhc---CCCeEE
Confidence 4689999999999999999999765 579999998764 122111100 00112234443 347899
Q ss_pred EeccchhhccCCCCcchhHHHHHHHHHHhccCC--------CCCCcEEEEEeCCCCC--CCCccccc----cccc-eEEE
Q 004584 600 LDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP--------PKGKKLLVIGTTSEVS--FLDSVGIC----DAFS-VTYH 664 (744)
Q Consensus 600 iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--------~~~~~v~vi~~tn~~~--~l~~~~l~----~rf~-~~i~ 664 (744)
||||+.|. ..++..|+..++.-. ....++.+|++|+..- +.....++ .|+. ..|.
T Consensus 476 Ldei~~L~----------~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~ 545 (686)
T PRK15429 476 LDEVGDMP----------LELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIH 545 (686)
T ss_pred EechhhCC----------HHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEe
Confidence 99999984 567777877775421 1124678998887752 22222222 2332 5689
Q ss_pred cCCCC--HHHHHHHHHHc--------c----CCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccC
Q 004584 665 VPTLK--TDDAKKVLKQL--------N----VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQG 716 (744)
Q Consensus 665 ~p~~~--~~~~~~Il~~~--------~----~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~ 716 (744)
+||+. .+|+..+++++ + .++++.+..+..+-++||+|+|.+++++|...+..
T Consensus 546 lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~~~~ 611 (686)
T PRK15429 546 LPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRG 611 (686)
T ss_pred CCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCC
Confidence 99999 67888777752 1 35666666677777899999999999999876543
No 279
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.18 E-value=7.6e-10 Score=118.85 Aligned_cols=226 Identities=22% Similarity=0.282 Sum_probs=146.9
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCC----CcEEec
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGM----EPKIVN 287 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~----~~~~v~ 287 (744)
+.++|++.-+|.-......+...+.+.+- .+...++||||+|.|||+|++++++..... .++.++
T Consensus 82 ~~ytFdnFv~g~~N~~A~aa~~~va~~~g-----------~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~ 150 (408)
T COG0593 82 PKYTFDNFVVGPSNRLAYAAAKAVAENPG-----------GAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT 150 (408)
T ss_pred CCCchhheeeCCchHHHHHHHHHHHhccC-----------CcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc
Confidence 78899998677666665555444443331 123469999999999999999999988432 245566
Q ss_pred ccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCc
Q 004584 288 GPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNN 367 (744)
Q Consensus 288 ~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~ 367 (744)
...++..++-....+--+-|+.-. . -.+++||||+.+..+.... +..-.+++.+ ...++
T Consensus 151 se~f~~~~v~a~~~~~~~~Fk~~y-~---------~dlllIDDiq~l~gk~~~q----eefFh~FN~l-------~~~~k 209 (408)
T COG0593 151 SEDFTNDFVKALRDNEMEKFKEKY-S---------LDLLLIDDIQFLAGKERTQ----EEFFHTFNAL-------LENGK 209 (408)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhh-c---------cCeeeechHhHhcCChhHH----HHHHHHHHHH-------HhcCC
Confidence 666666655443333233344333 2 2499999999997543210 1112222222 33345
Q ss_pred EEEEEEeCCCCcc---chhhcCCCccc--eEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHH
Q 004584 368 VLLIGMTNRKDML---DEALLRPGRLE--VQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAEL 442 (744)
Q Consensus 368 v~vI~~tn~~~~i---d~al~r~gRf~--~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl 442 (744)
-+|+.+-..|..+ .|.|++ ||. ..+.+.+||.+.|..||+........ ..++..+..++..... +.+++
T Consensus 210 qIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~---~i~~ev~~~la~~~~~-nvReL 283 (408)
T COG0593 210 QIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGI---EIPDEVLEFLAKRLDR-NVREL 283 (408)
T ss_pred EEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHhhc-cHHHH
Confidence 5566555566554 689988 665 45789999999999999986654432 2345557788888764 88999
Q ss_pred HHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHHhhhccC
Q 004584 443 EGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPA 489 (744)
Q Consensus 443 ~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~Ps 489 (744)
+..+.....++.... ..+|.+...++++....+
T Consensus 284 egaL~~l~~~a~~~~--------------~~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 284 EGALNRLDAFALFTK--------------RAITIDLVKEILKDLLRA 316 (408)
T ss_pred HHHHHHHHHHHHhcC--------------ccCcHHHHHHHHHHhhcc
Confidence 998888877776432 257777777777766443
No 280
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.16 E-value=3.7e-10 Score=128.44 Aligned_cols=170 Identities=19% Similarity=0.205 Sum_probs=111.4
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEccccc--------ccccchhhHh---hHHHHHHHHHhcCCCeEEE
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES--------MIGLHESTKC---AQIVKVFEDAYKSPLSIII 599 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~--------~~g~~~~~~~---~~i~~if~~a~~~~~~il~ 599 (744)
..++||+|++||||+++|++++..+ +.+|+.++|... ++|+..+... +.-..+|+.|. .+.||
T Consensus 227 ~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~ 303 (520)
T PRK10820 227 DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVL 303 (520)
T ss_pred CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEE
Confidence 4569999999999999999998665 468999998764 2332211000 00123455543 37899
Q ss_pred EeccchhhccCCCCcchhHHHHHHHHHHhccCC--------CCCCcEEEEEeCCCCC--CCCcc----cccccc-ceEEE
Q 004584 600 LDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP--------PKGKKLLVIGTTSEVS--FLDSV----GICDAF-SVTYH 664 (744)
Q Consensus 600 iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--------~~~~~v~vi~~tn~~~--~l~~~----~l~~rf-~~~i~ 664 (744)
||||+.|. ..++..|+.+++.-. ....++.||++|+..- +.... .+..|+ ...|+
T Consensus 304 LdeI~~L~----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~ 373 (520)
T PRK10820 304 LDEIGEMS----------PRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLN 373 (520)
T ss_pred EeChhhCC----------HHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEe
Confidence 99999984 567777877776521 1123578888887642 22211 233454 36789
Q ss_pred cCCCC--HHHHHHHHHHc--------c----CCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccC
Q 004584 665 VPTLK--TDDAKKVLKQL--------N----VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQG 716 (744)
Q Consensus 665 ~p~~~--~~~~~~Il~~~--------~----~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~ 716 (744)
+||+. .+|+..+++++ + .++++-+..+..+-++||+|+|.+++++|...++.
T Consensus 374 lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~~~~ 439 (520)
T PRK10820 374 LPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQLEG 439 (520)
T ss_pred CCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCC
Confidence 99999 56777766542 1 34555555555555899999999999999876544
No 281
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=9e-10 Score=127.00 Aligned_cols=197 Identities=17% Similarity=0.200 Sum_probs=129.1
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE--Eec---
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK--IVN--- 287 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~--~v~--- 287 (744)
.-+|++ |.|.++.++.+ +.++... +.++.+|||||||+|||++|+.+|+.+.+.... ...
T Consensus 12 P~~~~e--iiGq~~~~~~L-~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 12 SQTFAE--LVGQEHVVQTL-RNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred CCCHHH--hcCCHHHHHHH-HHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 456888 99999998887 6655432 223468999999999999999999998643210 000
Q ss_pred c-----------cchhc--ccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHH
Q 004584 288 G-----------PEVLS--KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQ 354 (744)
Q Consensus 288 ~-----------~~l~~--~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~ 354 (744)
| .+++. .........++++.+.+.. .+.. +...|+||||+|.|. ....+.
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~-~p~~---~~~kVvIIDEa~~L~-------------~~a~na 139 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQF-RPAL---ARYKVYIIDEVHMLS-------------TAAFNA 139 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhh-Cccc---CCeEEEEEeChHhCC-------------HHHHHH
Confidence 0 11110 0001223446666554433 2222 234699999999874 234667
Q ss_pred HHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhc
Q 004584 355 LLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAART 434 (744)
Q Consensus 355 LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t 434 (744)
||..++.. ..++++|.+++..+.+.+.+++ |+. .++|..++..+...+++..++.... ..++..+..++..+
T Consensus 140 LLk~LEep--p~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl---~i~~eal~~La~~s 211 (585)
T PRK14950 140 LLKTLEEP--PPHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGI---NLEPGALEAIARAA 211 (585)
T ss_pred HHHHHhcC--CCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHc
Confidence 78877743 3467777777888888888887 654 6889999999888888877655331 12344577888888
Q ss_pred CCCChHHHHHHHHHHH
Q 004584 435 KNYSGAELEGVAKSAV 450 (744)
Q Consensus 435 ~g~sg~dl~~l~~~A~ 450 (744)
.| +.+++.+.++...
T Consensus 212 ~G-dlr~al~~LekL~ 226 (585)
T PRK14950 212 TG-SMRDAENLLQQLA 226 (585)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 76 7777777766543
No 282
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.16 E-value=7.3e-10 Score=110.19 Aligned_cols=131 Identities=14% Similarity=0.242 Sum_probs=95.2
Q ss_pred CCCceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEcccccccccchhhHhhHHHHHHHHHh-cCCCeEEEEeccchh
Q 004584 531 GSPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIGLHESTKCAQIVKVFEDAY-KSPLSIIILDDIERL 606 (744)
Q Consensus 531 ~~~~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~-~~~~~il~iDEid~l 606 (744)
..|..++||+|++|||||++++++..+. ++.+|.+...+. ..+.++++..+ ...+-|||+|++--
T Consensus 49 G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L----------~~l~~l~~~l~~~~~kFIlf~DDLsF- 117 (249)
T PF05673_consen 49 GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL----------GDLPELLDLLRDRPYKFILFCDDLSF- 117 (249)
T ss_pred CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh----------ccHHHHHHHHhcCCCCEEEEecCCCC-
Confidence 3578999999999999999999998764 667777743332 24666666655 33567999998642
Q ss_pred hccCCCCcchhHHHHHHHHHHhccC-CCCCCcEEEEEeCCCCCCCCcc----------------------ccccccceEE
Q 004584 607 LEYVPIGPRFSNIISQTMLVLLKRL-PPKGKKLLVIGTTSEVSFLDSV----------------------GICDAFSVTY 663 (744)
Q Consensus 607 ~~~~~~g~~~~~~~~~~Ll~~l~~~-~~~~~~v~vi~~tn~~~~l~~~----------------------~l~~rf~~~i 663 (744)
+ ..+.-...|..+|++- .....+|+|.+|+|+..++... .|..||..+|
T Consensus 118 -e-------~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l 189 (249)
T PF05673_consen 118 -E-------EGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWL 189 (249)
T ss_pred -C-------CCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEE
Confidence 1 1233445666777763 3445689999999986644221 2458999999
Q ss_pred EcCCCCHHHHHHHHHHc
Q 004584 664 HVPTLKTDDAKKVLKQL 680 (744)
Q Consensus 664 ~~p~~~~~~~~~Il~~~ 680 (744)
.|.+++.++..+|++++
T Consensus 190 ~F~~~~q~~YL~IV~~~ 206 (249)
T PF05673_consen 190 SFYPPDQEEYLAIVRHY 206 (249)
T ss_pred EecCCCHHHHHHHHHHH
Confidence 99999999999999975
No 283
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=1.3e-09 Score=125.51 Aligned_cols=200 Identities=20% Similarity=0.260 Sum_probs=133.8
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE-------
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI------- 285 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~------- 285 (744)
.-+|++ |.|.++.++.+ ..++... ..++.+|||||+|+|||++|+.+|+.+.|.....
T Consensus 13 P~~f~~--viGq~~~~~~L-~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~ 77 (614)
T PRK14971 13 PSTFES--VVGQEALTTTL-KNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNE 77 (614)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCc
Confidence 457888 89999998888 6665432 2344689999999999999999999986432110
Q ss_pred -ecccchhc-------cccc---chHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHH
Q 004584 286 -VNGPEVLS-------KFVG---ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQ 354 (744)
Q Consensus 286 -v~~~~l~~-------~~~g---~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~ 354 (744)
-+|..+.. .+-+ .....++++.+.+... |..+ ...|++|||+|.+. ....+.
T Consensus 78 C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~-P~~~---~~KVvIIdea~~Ls-------------~~a~na 140 (614)
T PRK14971 78 CESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIP-PQIG---KYKIYIIDEVHMLS-------------QAAFNA 140 (614)
T ss_pred chHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhC-cccC---CcEEEEEECcccCC-------------HHHHHH
Confidence 00000000 0111 1234577777666432 3222 24599999999873 235677
Q ss_pred HHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhc
Q 004584 355 LLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAART 434 (744)
Q Consensus 355 LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t 434 (744)
|+..|+. .....++|.+|+.+..|-+.+++ |+. .++|..++.++....++..+.+... -.++..+..++..+
T Consensus 141 LLK~LEe--pp~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi---~i~~~al~~La~~s 212 (614)
T PRK14971 141 FLKTLEE--PPSYAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGI---TAEPEALNVIAQKA 212 (614)
T ss_pred HHHHHhC--CCCCeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHc
Confidence 8888884 33467777788788899999998 754 6899999999988888877665431 12334578888888
Q ss_pred CCCChHHHHHHHHHHHHHH
Q 004584 435 KNYSGAELEGVAKSAVSFA 453 (744)
Q Consensus 435 ~g~sg~dl~~l~~~A~~~a 453 (744)
.| +.+++.++++....++
T Consensus 213 ~g-dlr~al~~Lekl~~y~ 230 (614)
T PRK14971 213 DG-GMRDALSIFDQVVSFT 230 (614)
T ss_pred CC-CHHHHHHHHHHHHHhc
Confidence 65 7777777776655443
No 284
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.14 E-value=1.5e-09 Score=113.56 Aligned_cols=192 Identities=14% Similarity=0.181 Sum_probs=115.4
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhcC-CCEEE--Eccccc--------c---cccch--hhHh---hHHHHHH-HHHhcC
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDSD-FPFVK--IISAES--------M---IGLHE--STKC---AQIVKVF-EDAYKS 593 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~~-~~~i~--v~~~~~--------~---~g~~~--~~~~---~~i~~if-~~a~~~ 593 (744)
...++|+||+|+|||++++.++.... ..++. +..+.. + .|... ..+. ..+...+ ......
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 45689999999999999999998764 22221 111110 0 12111 0011 1222222 223355
Q ss_pred CCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcE--EEEEeCCCCCCCCcc---ccccccceEEEcCCC
Q 004584 594 PLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKL--LVIGTTSEVSFLDSV---GICDAFSVTYHVPTL 668 (744)
Q Consensus 594 ~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v--~vi~~tn~~~~l~~~---~l~~rf~~~i~~p~~ 668 (744)
.+.+|+|||++.+. ......|..+.+........+ +++|.+...+.+... .+.+|+...++++++
T Consensus 123 ~~~vliiDe~~~l~----------~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 123 KRALLVVDEAQNLT----------PELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred CCeEEEEECcccCC----------HHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCC
Confidence 67899999999874 222333333332222222222 222322222223221 355788889999999
Q ss_pred CHHHHHHHHHHc----c----CCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHHH
Q 004584 669 KTDDAKKVLKQL----N----VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQD 740 (744)
Q Consensus 669 ~~~~~~~Il~~~----~----~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~~ 740 (744)
+.+|+..++.+. + ...+++..+.+.+.++|..|.+..++..+...+.. .+...|+.+++.+++.+
T Consensus 193 ~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~-------~~~~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 193 DREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFL-------EEKREIGGEEVREVIAE 265 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHH-------cCCCCCCHHHHHHHHHH
Confidence 999999988752 1 12345677778888899899988888888666432 36678999999999987
Q ss_pred Hh
Q 004584 741 MV 742 (744)
Q Consensus 741 ~~ 742 (744)
+.
T Consensus 266 ~~ 267 (269)
T TIGR03015 266 ID 267 (269)
T ss_pred hh
Confidence 63
No 285
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.13 E-value=5.1e-10 Score=127.33 Aligned_cols=170 Identities=20% Similarity=0.172 Sum_probs=113.7
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEccccc--------ccccchhhHh---hHHHHHHHHHhcCCCeEEE
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES--------MIGLHESTKC---AQIVKVFEDAYKSPLSIII 599 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~--------~~g~~~~~~~---~~i~~if~~a~~~~~~il~ 599 (744)
..+|||+|++|||||++|++++..+ +.+|+.++|... ++|...+... ..-...|..| ..+.||
T Consensus 210 ~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ 286 (509)
T PRK05022 210 DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELA---DGGTLF 286 (509)
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCccccccCCCcccCCcchhhc---CCCEEE
Confidence 4689999999999999999999875 479999998764 1221111000 0001134444 347899
Q ss_pred EeccchhhccCCCCcchhHHHHHHHHHHhccCC--------CCCCcEEEEEeCCCCC--CCCcccc----ccccc-eEEE
Q 004584 600 LDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP--------PKGKKLLVIGTTSEVS--FLDSVGI----CDAFS-VTYH 664 (744)
Q Consensus 600 iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--------~~~~~v~vi~~tn~~~--~l~~~~l----~~rf~-~~i~ 664 (744)
||||+.|. ..++..|+..++.-. ....++.+|++|+..- ......+ ..|+. ..|+
T Consensus 287 ldeI~~L~----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~ 356 (509)
T PRK05022 287 LDEIGELP----------LALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLS 356 (509)
T ss_pred ecChhhCC----------HHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHhcccccEee
Confidence 99999984 567777877775421 1123678999998752 1111122 23333 5689
Q ss_pred cCCCC--HHHHHHHHHHc--------c----CCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccC
Q 004584 665 VPTLK--TDDAKKVLKQL--------N----VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQG 716 (744)
Q Consensus 665 ~p~~~--~~~~~~Il~~~--------~----~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~ 716 (744)
+||+. .+|+..+++++ + .++++.+..+..+-++||+|+|.++++.|+..+..
T Consensus 357 lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 357 VPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLARA 422 (509)
T ss_pred CCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhcCC
Confidence 99999 67888877752 1 35666666677777899999999999999876543
No 286
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.13 E-value=3.9e-10 Score=119.74 Aligned_cols=130 Identities=15% Similarity=0.207 Sum_probs=84.8
Q ss_pred CeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCC----------CCCCcEEEEEeCCCCCCCCccccccccceEEE
Q 004584 595 LSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP----------PKGKKLLVIGTTSEVSFLDSVGICDAFSVTYH 664 (744)
Q Consensus 595 ~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~----------~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~ 664 (744)
.++||+|||+.+. ..+++.|+..|+.-. ....++++++++|..+.--+..+..||...+.
T Consensus 129 ~GiL~lDEInrl~----------~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~ 198 (334)
T PRK13407 129 RGYLYIDEVNLLE----------DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVE 198 (334)
T ss_pred CCeEEecChHhCC----------HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEE
Confidence 3689999999974 677888888886421 12347889998886543223367799999999
Q ss_pred cCCCCH-HHHHHHHHHccCC-----------------CHHHHHHHH----------------H----hCCCCcHHHHHHH
Q 004584 665 VPTLKT-DDAKKVLKQLNVF-----------------AEEDVDSAS----------------E----ALNDMPIKKLYML 706 (744)
Q Consensus 665 ~p~~~~-~~~~~Il~~~~~~-----------------~~~~~~~~~----------------~----~~~~g~ir~l~~~ 706 (744)
++++.. ++..+|+++.... ..+++..+- . .....+.|..+.+
T Consensus 199 v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l 278 (334)
T PRK13407 199 VRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTL 278 (334)
T ss_pred cCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHH
Confidence 998884 7878888762111 112222221 1 1112345555566
Q ss_pred HHHHHhcccCCcccccccCCCCcchhhHHHHHHHH
Q 004584 707 IEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDM 741 (744)
Q Consensus 707 l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~~~ 741 (744)
+..|... |..+|++.|+.+|+.++..-+
T Consensus 279 ~~aA~a~-------A~l~Gr~~V~~~Di~~~~~~v 306 (334)
T PRK13407 279 LRAARAL-------AAFEGAEAVGRSHLRSVATMA 306 (334)
T ss_pred HHHHHHH-------HHHcCCCeeCHHHHHHHHHHh
Confidence 6666665 455799999999998887644
No 287
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.13 E-value=1.7e-09 Score=116.25 Aligned_cols=162 Identities=20% Similarity=0.215 Sum_probs=105.8
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhcCC-------CEEEE----c-----------ccccc-cccc--hh-------hHh
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDSDF-------PFVKI----I-----------SAESM-IGLH--ES-------TKC 580 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~~~-------~~i~v----~-----------~~~~~-~g~~--~~-------~~~ 580 (744)
.+..+||+||+|+|||++|+.+|..... +.... . .|+.+ +... +. -+.
T Consensus 44 l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~v 123 (351)
T PRK09112 44 LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITV 123 (351)
T ss_pred CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCH
Confidence 3456999999999999999999976533 11000 0 01111 1100 10 113
Q ss_pred hHHHHHHHHHh----cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccc
Q 004584 581 AQIVKVFEDAY----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGIC 656 (744)
Q Consensus 581 ~~i~~if~~a~----~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~ 656 (744)
+.++++-+... .+...|++|||+|.|. ....++|+..|+..+. +.++|..|+.++.+.+ .++
T Consensus 124 d~iR~l~~~l~~~~~~g~~rVviIDeAd~l~----------~~aanaLLk~LEEpp~---~~~fiLit~~~~~llp-tIr 189 (351)
T PRK09112 124 DEIRRVGHFLSQTSGDGNWRIVIIDPADDMN----------RNAANAILKTLEEPPA---RALFILISHSSGRLLP-TIR 189 (351)
T ss_pred HHHHHHHHHhhhccccCCceEEEEEchhhcC----------HHHHHHHHHHHhcCCC---CceEEEEECChhhccH-HHH
Confidence 45555544432 4567899999999984 5567778888887432 3344444566666654 566
Q ss_pred cccceEEEcCCCCHHHHHHHHHHccCC--CHHHHHHHHHhCCCCcHHHHHHHHHH
Q 004584 657 DAFSVTYHVPTLKTDDAKKVLKQLNVF--AEEDVDSASEALNDMPIKKLYMLIEM 709 (744)
Q Consensus 657 ~rf~~~i~~p~~~~~~~~~Il~~~~~~--~~~~~~~~~~~~~~g~ir~l~~~l~~ 709 (744)
+|+ ..++|++|+.+++.++|++.+.. .+++....+...++|+.|.++++++.
T Consensus 190 SRc-~~i~l~pl~~~~~~~~L~~~~~~~~~~~~~~~~i~~~s~G~pr~Al~ll~~ 243 (351)
T PRK09112 190 SRC-QPISLKPLDDDELKKALSHLGSSQGSDGEITEALLQRSKGSVRKALLLLNY 243 (351)
T ss_pred hhc-cEEEecCCCHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 776 69999999999999999985322 22445566777889999999988854
No 288
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.13 E-value=8.4e-10 Score=120.55 Aligned_cols=189 Identities=17% Similarity=0.229 Sum_probs=110.8
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhcCC--CEE--EE--cccccccccc-hhhHhhHHHHHHHHHhcC---CCeEEEEecc
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDSDF--PFV--KI--ISAESMIGLH-ESTKCAQIVKVFEDAYKS---PLSIIILDDI 603 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~~~--~~i--~v--~~~~~~~g~~-~~~~~~~i~~if~~a~~~---~~~il~iDEi 603 (744)
..++||+||||||||++|+++|...+. +|. .+ ..+..++|.. ..... -..-|....+. ...+||+|||
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~--~~g~f~r~~~G~L~~A~lLfLDEI 116 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALK--DEGRYQRLTSGYLPEAEIVFLDEI 116 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhh--hcCchhhhcCCccccccEEeeccc
Confidence 478999999999999999999986532 333 22 2455566632 11000 01122222211 2348999999
Q ss_pred chhhccCCCCcchhHHHHHHHHHHhccCC--C-----CCCcEEEEEeCCCCCCCCc--cccccccceEEEcCCCC-HHHH
Q 004584 604 ERLLEYVPIGPRFSNIISQTMLVLLKRLP--P-----KGKKLLVIGTTSEVSFLDS--VGICDAFSVTYHVPTLK-TDDA 673 (744)
Q Consensus 604 d~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--~-----~~~~v~vi~~tn~~~~l~~--~~l~~rf~~~i~~p~~~-~~~~ 673 (744)
.++ +..+++.|+..|+.-. . .....++++|||....-+. ..+..||...+.+|+++ .++.
T Consensus 117 ~ra----------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~DRFliri~vp~l~~~~~e 186 (498)
T PRK13531 117 WKA----------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYDRMLIRLWLDKVQDKANF 186 (498)
T ss_pred ccC----------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHhhEEEEEECCCCCchHHH
Confidence 876 4678888888884321 0 0112344555675422110 14568998899999998 5666
Q ss_pred HHHHHHcc-----------CCCHHHHHHHHHhCC----C----------------------CcHHHHHHHHHHHHhcccC
Q 004584 674 KKVLKQLN-----------VFAEEDVDSASEALN----D----------------------MPIKKLYMLIEMAAQGEQG 716 (744)
Q Consensus 674 ~~Il~~~~-----------~~~~~~~~~~~~~~~----~----------------------g~ir~l~~~l~~a~~~a~~ 716 (744)
.+++.... ..+.+|+..+..... + .+.|..+.++..|...
T Consensus 187 ~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~--- 263 (498)
T PRK13531 187 RSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQAS--- 263 (498)
T ss_pred HHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHH---
Confidence 88886421 244555554443332 1 2334444433333333
Q ss_pred CcccccccCCCCcchhhHHHHHHHHh
Q 004584 717 GAAEAIYSGREKIKISHFYDCLQDMV 742 (744)
Q Consensus 717 ~~~~a~~~g~~~It~e~~~~al~~~~ 742 (744)
|...|+..|+++|+. .+..+.
T Consensus 264 ----A~l~GR~~V~p~Dv~-ll~~vL 284 (498)
T PRK13531 264 ----AFFSGRDAIAPIDLI-LLKDCL 284 (498)
T ss_pred ----HHHCCCCCCCHHHHH-HhHHHh
Confidence 345799999999999 666554
No 289
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.2e-09 Score=110.96 Aligned_cols=81 Identities=27% Similarity=0.449 Sum_probs=62.3
Q ss_pred EEEEcCcchhcccCCCCCCCCcc-HHHHHHHHHHhccCc--------cCCCcEEEEEEe----CCCCccchhhcCCCccc
Q 004584 325 VIIFDEIDAICKSRGSTRDGTGV-HDSIVNQLLTKIDGV--------ESLNNVLLIGMT----NRKDMLDEALLRPGRLE 391 (744)
Q Consensus 325 Il~iDEid~l~~~~~~~~~~~~~-~~~~~~~LL~~~d~~--------~~~~~v~vI~~t----n~~~~id~al~r~gRf~ 391 (744)
|+||||||.++.+.+.... ++ ..-+...||..++|. -..+.+++||+. ..|+++-|.| -|||.
T Consensus 253 IvFIDEIDKIa~~~~~g~~--dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPEL--QGRfP 328 (444)
T COG1220 253 IVFIDEIDKIAKRGGSGGP--DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPEL--QGRFP 328 (444)
T ss_pred eEEEehhhHHHhcCCCCCC--CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhh--cCCCc
Confidence 9999999999987763321 22 334666788888763 234578999886 5688888888 56999
Q ss_pred eEEEEcCCCHHHHHHHHH
Q 004584 392 VQVEISLPDENGRLQILQ 409 (744)
Q Consensus 392 ~~i~i~~Pd~~~r~~Il~ 409 (744)
..+++...+.++-..||.
T Consensus 329 IRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 329 IRVELDALTKEDFERILT 346 (444)
T ss_pred eEEEcccCCHHHHHHHHc
Confidence 999999999999988884
No 290
>PRK09087 hypothetical protein; Validated
Probab=99.12 E-value=5.2e-10 Score=113.18 Aligned_cols=201 Identities=19% Similarity=0.156 Sum_probs=121.4
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccch
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l 291 (744)
+..+|++.-+|+-+...-.+++++. + .+.+.++|+||+|+|||+|++++++..+ ..+++..++
T Consensus 16 ~~~~~~~Fi~~~~N~~a~~~l~~~~-------------~-~~~~~l~l~G~~GsGKThLl~~~~~~~~---~~~i~~~~~ 78 (226)
T PRK09087 16 PAYGRDDLLVTESNRAAVSLVDHWP-------------N-WPSPVVVLAGPVGSGKTHLASIWREKSD---ALLIHPNEI 78 (226)
T ss_pred CCCChhceeecCchHHHHHHHHhcc-------------c-CCCCeEEEECCCCCCHHHHHHHHHHhcC---CEEecHHHc
Confidence 5678888755565554333323211 0 1234599999999999999999998752 234443322
Q ss_pred hcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEE
Q 004584 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLI 371 (744)
Q Consensus 292 ~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI 371 (744)
.. +.+..... .+|+|||++.+.. .... |...++.+...+..+||
T Consensus 79 ~~-----------~~~~~~~~-----------~~l~iDDi~~~~~----------~~~~----lf~l~n~~~~~g~~ili 122 (226)
T PRK09087 79 GS-----------DAANAAAE-----------GPVLIEDIDAGGF----------DETG----LFHLINSVRQAGTSLLM 122 (226)
T ss_pred ch-----------HHHHhhhc-----------CeEEEECCCCCCC----------CHHH----HHHHHHHHHhCCCeEEE
Confidence 11 11111111 1889999997621 0111 22333333333556677
Q ss_pred EEeCCCCc---cchhhcCCCccc--eEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHH
Q 004584 372 GMTNRKDM---LDEALLRPGRLE--VQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVA 446 (744)
Q Consensus 372 ~~tn~~~~---id~al~r~gRf~--~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~ 446 (744)
+++..|.. ..+.+++ |+. ..+++..|+.+.|.+|++.+++... ...++..++.|++...+ +.+.+..++
T Consensus 123 ts~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~---~~l~~ev~~~La~~~~r-~~~~l~~~l 196 (226)
T PRK09087 123 TSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQ---LYVDPHVVYYLVSRMER-SLFAAQTIV 196 (226)
T ss_pred ECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHhhh-hHHHHHHHH
Confidence 66655543 3688888 764 6899999999999999999887642 12455568888988875 666666655
Q ss_pred HHHHHHHHHhccccCCCCCCCccccceeehhHHHHHHhh
Q 004584 447 KSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYE 485 (744)
Q Consensus 447 ~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~ 485 (744)
......+... ...+|...+.++++.
T Consensus 197 ~~L~~~~~~~--------------~~~it~~~~~~~l~~ 221 (226)
T PRK09087 197 DRLDRLALER--------------KSRITRALAAEVLNE 221 (226)
T ss_pred HHHHHHHHHh--------------CCCCCHHHHHHHHHh
Confidence 5554444332 124666666666654
No 291
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.11 E-value=1.1e-09 Score=125.11 Aligned_cols=189 Identities=12% Similarity=0.092 Sum_probs=103.0
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhcCCCEEE-Eccc------ccc---------cccchhhHhhHHHHHHHHHh------
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVK-IISA------ESM---------IGLHESTKCAQIVKVFEDAY------ 591 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~-v~~~------~~~---------~g~~~~~~~~~i~~if~~a~------ 591 (744)
..-++|+||||||||++++.+|.+.+..++. .+.. ... ++.. ....+.+.+++..+.
T Consensus 110 ~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~~~~~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~ 188 (637)
T TIGR00602 110 KRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDHKVTLSLESCFSNF-QSQIEVFSEFLLRATNKLQML 188 (637)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccccccccchhhhhccccc-cchHHHHHHHHHHHHhhhccc
Confidence 3458999999999999999999887765433 1100 000 0111 122334555555553
Q ss_pred ----cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHH-HhccCCCCCCcEEEEEeCCC-CC-------C-------CC
Q 004584 592 ----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLV-LLKRLPPKGKKLLVIGTTSE-VS-------F-------LD 651 (744)
Q Consensus 592 ----~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~-~l~~~~~~~~~v~vi~~tn~-~~-------~-------l~ 651 (744)
.....||||||++.+.. +... .++.++. .... .+ ++.+|++++. +. . +.
T Consensus 189 g~~~~~~~~IILIDEiPn~~~------r~~~-~lq~lLr~~~~e---~~-~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~ 257 (637)
T TIGR00602 189 GDDLMTDKKIILVEDLPNQFY------RDTR-ALHEILRWKYVS---IG-RCPLVFIITESLEGDNNQRRLLFPAETIMN 257 (637)
T ss_pred ccccCCceeEEEeecchhhch------hhHH-HHHHHHHHHhhc---CC-CceEEEEecCCccccccccccccchhcccC
Confidence 23567999999998762 1223 3444433 2211 22 3333333332 11 0 11
Q ss_pred ccccccccceEEEcCCCCHHHHHHHHHH----cc-------CCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCccc
Q 004584 652 SVGICDAFSVTYHVPTLKTDDAKKVLKQ----LN-------VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAE 720 (744)
Q Consensus 652 ~~~l~~rf~~~i~~p~~~~~~~~~Il~~----~~-------~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~ 720 (744)
+..+......+|.|+|++..++.+.|++ .. ...+.+....+...+.||+|.+++.|+.+.... . .-
T Consensus 258 ~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDiRsAIn~LQf~~~~~-g--~~ 334 (637)
T TIGR00602 258 KEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDIRSAINSLQFSSSKS-G--SL 334 (637)
T ss_pred HhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCChHHHHHHHHHHHHhcC-C--cc
Confidence 2222222335799999999885554443 21 122345555555678999999999999985432 0 00
Q ss_pred ccccCCCCcchhhHHHH
Q 004584 721 AIYSGREKIKISHFYDC 737 (744)
Q Consensus 721 a~~~g~~~It~e~~~~a 737 (744)
+...+...++..|+..+
T Consensus 335 a~~~~~~~vs~~hv~~a 351 (637)
T TIGR00602 335 PIKKRMSTKSDAHASKS 351 (637)
T ss_pred ccccccccccHHHhhhc
Confidence 11234445665555444
No 292
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.11 E-value=1.1e-09 Score=107.96 Aligned_cols=152 Identities=21% Similarity=0.269 Sum_probs=100.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhcCCCcE-------Eecc--------cchh--cccc-cchHHHHHHHHHHHHhccc
Q 004584 254 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPK-------IVNG--------PEVL--SKFV-GETEKNIRDLFADAENDQR 315 (744)
Q Consensus 254 ~~giLL~GppGtGKT~lar~la~~l~~~~~~-------~v~~--------~~l~--~~~~-g~~~~~i~~~f~~a~~~~~ 315 (744)
+..+|||||+|+|||++|+.+++.+.+.... ..+| +++. .... .-....++++.+.+....
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~- 92 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTP- 92 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCc-
Confidence 4579999999999999999999998543100 0000 0110 0000 012356666666655432
Q ss_pred ccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEE
Q 004584 316 TRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVE 395 (744)
Q Consensus 316 ~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~ 395 (744)
. .+...|++|||+|.+. ....+.||..|+.. ..+..+|.+|+.+..+.+++++ |+. .++
T Consensus 93 ~---~~~~kviiide~~~l~-------------~~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~~-~~~ 151 (188)
T TIGR00678 93 Q---ESGRRVVIIEDAERMN-------------EAAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RCQ-VLP 151 (188)
T ss_pred c---cCCeEEEEEechhhhC-------------HHHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hcE-Eee
Confidence 1 1235699999999874 23456688888753 3456677778888899999998 664 799
Q ss_pred EcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCC
Q 004584 396 ISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKN 436 (744)
Q Consensus 396 i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g 436 (744)
|++|+.++..++++.+ . + ++..+..++..+.|
T Consensus 152 ~~~~~~~~~~~~l~~~--g------i-~~~~~~~i~~~~~g 183 (188)
T TIGR00678 152 FPPLSEEALLQWLIRQ--G------I-SEEAAELLLALAGG 183 (188)
T ss_pred CCCCCHHHHHHHHHHc--C------C-CHHHHHHHHHHcCC
Confidence 9999999999998765 1 2 23446777777665
No 293
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.10 E-value=1.5e-08 Score=119.03 Aligned_cols=136 Identities=19% Similarity=0.214 Sum_probs=91.4
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhcCCCEEEEccccc-----ccccch-h---hHhhHHHHHHHHHhcCCCeEEEEecc
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES-----MIGLHE-S---TKCAQIVKVFEDAYKSPLSIIILDDI 603 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~-----~~g~~~-~---~~~~~i~~if~~a~~~~~~il~iDEi 603 (744)
-.+++||.|.||.|||++..++|+..|..+++++-++. ++|... . ....-...=|-.|-+. ...+++||+
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~-G~WVlLDEi 1620 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD-GGWVLLDEI 1620 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc-CCEEEeehh
Confidence 34678999999999999999999999999999987654 355321 1 1111111223333332 379999999
Q ss_pred chhhccCCCCcchhHHHHHHHHHHhccCC-----------CCCCcEEEEEeCCCCCC-----CCccccccccceEEEcCC
Q 004584 604 ERLLEYVPIGPRFSNIISQTMLVLLKRLP-----------PKGKKLLVIGTTSEVSF-----LDSVGICDAFSVTYHVPT 667 (744)
Q Consensus 604 d~l~~~~~~g~~~~~~~~~~Ll~~l~~~~-----------~~~~~v~vi~~tn~~~~-----l~~~~l~~rf~~~i~~p~ 667 (744)
.-. +..++..|...|+... ....+..|+||-|.-+. .-|..+..||. ++.+..
T Consensus 1621 NLa----------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFs-vV~~d~ 1689 (4600)
T COG5271 1621 NLA----------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFS-VVKMDG 1689 (4600)
T ss_pred hhh----------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhh-eEEecc
Confidence 754 3456666665555421 12346788988887542 22334558888 778999
Q ss_pred CCHHHHHHHHHHc
Q 004584 668 LKTDDAKKVLKQL 680 (744)
Q Consensus 668 ~~~~~~~~Il~~~ 680 (744)
++.+++..|+.+.
T Consensus 1690 lt~dDi~~Ia~~~ 1702 (4600)
T COG5271 1690 LTTDDITHIANKM 1702 (4600)
T ss_pred cccchHHHHHHhh
Confidence 9999999999985
No 294
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.09 E-value=1.1e-09 Score=114.73 Aligned_cols=136 Identities=13% Similarity=0.174 Sum_probs=93.4
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhcCCCEEEEccccc-----ccccch-----hhH-hhHHHHHHHHHhcCCCeEEEEec
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES-----MIGLHE-----STK-CAQIVKVFEDAYKSPLSIIILDD 602 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~-----~~g~~~-----~~~-~~~i~~if~~a~~~~~~il~iDE 602 (744)
..++||.||||||||++++.+|..++.+++++++... ++|... +.. .......+..|.+ .+.++++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 4679999999999999999999999999999976554 455321 110 1112234445544 458899999
Q ss_pred cchhhccCCCCcchhHHHHHHHHHHhcc-----CCC------CCCcEEEEEeCCCCCCCCc-----------cccccccc
Q 004584 603 IERLLEYVPIGPRFSNIISQTMLVLLKR-----LPP------KGKKLLVIGTTSEVSFLDS-----------VGICDAFS 660 (744)
Q Consensus 603 id~l~~~~~~g~~~~~~~~~~Ll~~l~~-----~~~------~~~~v~vi~~tn~~~~l~~-----------~~l~~rf~ 660 (744)
+|+.- ..++..|..+|+. ++. ....+.||+|.|..+.-|. ..+.+||.
T Consensus 143 in~a~----------p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~ 212 (327)
T TIGR01650 143 YDAGR----------PDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWS 212 (327)
T ss_pred hhccC----------HHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhhee
Confidence 99863 3455555555552 111 1225789999998764332 24558999
Q ss_pred eEEEcCCCCHHHHHHHHHHc
Q 004584 661 VTYHVPTLKTDDAKKVLKQL 680 (744)
Q Consensus 661 ~~i~~p~~~~~~~~~Il~~~ 680 (744)
..+.+..|+.++-.+|+...
T Consensus 213 i~~~~~Yp~~e~E~~Il~~~ 232 (327)
T TIGR01650 213 IVTTLNYLEHDNEAAIVLAK 232 (327)
T ss_pred eEeeCCCCCHHHHHHHHHhh
Confidence 88999999988878888753
No 295
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=9.4e-10 Score=116.73 Aligned_cols=221 Identities=14% Similarity=0.170 Sum_probs=136.0
Q ss_pred eeecCcchhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhh----cC-CCEEEEccccc------c--
Q 004584 505 MVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGID----SD-FPFVKIISAES------M-- 571 (744)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~----~~-~~~i~v~~~~~------~-- 571 (744)
+.+...++..+.++...+.+ ...++++++.|-||+|||.+...+-.. +. ...++++|.+. |
T Consensus 152 l~gRe~e~~~v~~F~~~hle------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 152 LKGRELEMDIVREFFSLHLE------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred ccchHHHHHHHHHHHHhhhh------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 33333334444444444443 367789999999999999988755422 22 24477777652 1
Q ss_pred -ccc------chhhHhhHHHHHHHHH-hcC-CCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEE
Q 004584 572 -IGL------HESTKCAQIVKVFEDA-YKS-PLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIG 642 (744)
Q Consensus 572 -~g~------~~~~~~~~i~~if~~a-~~~-~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~ 642 (744)
.+. +.+ ...+..+.|..- .+. .+-++++||+|.|... -++.|++++.+..-.+.++++||
T Consensus 226 I~~~~~q~~~s~~-~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr----------~~~vLy~lFewp~lp~sr~iLiG 294 (529)
T KOG2227|consen 226 IFSSLLQDLVSPG-TGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITR----------SQTVLYTLFEWPKLPNSRIILIG 294 (529)
T ss_pred HHHHHHHHhcCCc-hhHHHHHHHHHHHhcccceEEEEechhhHHhhc----------ccceeeeehhcccCCcceeeeee
Confidence 110 111 112333444432 222 4779999999999722 23445555555544567899999
Q ss_pred eCCCCCCCCccccc-----cccceEEEcCCCCHHHHHHHHHHc------cCCCHHHHHHHHHhCC--CCcHHHHHHHHHH
Q 004584 643 TTSEVSFLDSVGIC-----DAFSVTYHVPTLKTDDAKKVLKQL------NVFAEEDVDSASEALN--DMPIKKLYMLIEM 709 (744)
Q Consensus 643 ~tn~~~~l~~~~l~-----~rf~~~i~~p~~~~~~~~~Il~~~------~~~~~~~~~~~~~~~~--~g~ir~l~~~l~~ 709 (744)
..|..|+-|....+ ..-...+.||||+.+|+.+||+.. ..+-+..+.-++.+.+ .||+|+++.+++.
T Consensus 295 iANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ 374 (529)
T KOG2227|consen 295 IANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRR 374 (529)
T ss_pred ehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 99999877765332 344588999999999999999973 1223333333344444 9999999999999
Q ss_pred HHhcccCC--cc--c-----ccccCCCCcchhhHHHHHHHHh
Q 004584 710 AAQGEQGG--AA--E-----AIYSGREKIKISHFYDCLQDMV 742 (744)
Q Consensus 710 a~~~a~~~--~~--~-----a~~~g~~~It~e~~~~al~~~~ 742 (744)
|.+.++.. .. . ....+...|-.+|+..++.++.
T Consensus 375 aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~ 416 (529)
T KOG2227|consen 375 AIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVD 416 (529)
T ss_pred HHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhc
Confidence 88876532 00 0 0011224566788888877653
No 296
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.09 E-value=8.4e-10 Score=119.63 Aligned_cols=124 Identities=27% Similarity=0.483 Sum_probs=77.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhcCCC-c-----EEe----cccchhccc----ccch--HHHHHHHHHHHHhccccc
Q 004584 254 VKGMLLYGPPGTGKTLMARQIGKMLNGME-P-----KIV----NGPEVLSKF----VGET--EKNIRDLFADAENDQRTR 317 (744)
Q Consensus 254 ~~giLL~GppGtGKT~lar~la~~l~~~~-~-----~~v----~~~~l~~~~----~g~~--~~~i~~~f~~a~~~~~~~ 317 (744)
.++++|+||||||||++|+.+|..+.+.. + ..+ +..+++..+ .|.. .....+++..|....
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p--- 270 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQP--- 270 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcc---
Confidence 46899999999999999999999885321 1 111 122333222 1110 112334445554321
Q ss_pred CCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhcc--------------------CccCCCcEEEEEEeCCC
Q 004584 318 GDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKID--------------------GVESLNNVLLIGMTNRK 377 (744)
Q Consensus 318 ~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d--------------------~~~~~~~v~vI~~tn~~ 377 (744)
..|++||||||++.-. .++...++..|+ .+.-..++.+|||+|..
T Consensus 271 ---~~~~vliIDEINRani------------~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~ 335 (459)
T PRK11331 271 ---EKKYVFIIDEINRANL------------SKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTA 335 (459)
T ss_pred ---cCCcEEEEehhhccCH------------HHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCcc
Confidence 1368999999998532 223333333222 23445689999999998
Q ss_pred C----ccchhhcCCCccceEEEEcC
Q 004584 378 D----MLDEALLRPGRLEVQVEISL 398 (744)
Q Consensus 378 ~----~id~al~r~gRf~~~i~i~~ 398 (744)
+ .+|.||+| ||. .|++.+
T Consensus 336 Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 336 DRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred ccchhhccHHHHh--hhh-eEEecC
Confidence 8 68999999 986 466654
No 297
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.08 E-value=1.7e-09 Score=101.27 Aligned_cols=122 Identities=39% Similarity=0.556 Sum_probs=75.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEecccchhcccccchHHH---HHHHHHHHHhcccccCCCCCeeEEE
Q 004584 253 HVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGETEKN---IRDLFADAENDQRTRGDQSDLHVII 327 (744)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~~~g~~~~~---i~~~f~~a~~~~~~~~~~~~p~Il~ 327 (744)
..++++++||||||||++++.+++.+. ...+..+++.+............ ....+.... ...+.+|+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~li 89 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAE--------KAKPGVLF 89 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhc--------cCCCeEEE
Confidence 356899999999999999999999872 24556666665544332211111 001111111 12357999
Q ss_pred EcCcchhcccCCCCCCCCccHHHHHHHHHHhccCcc----CCCcEEEEEEeCCCC--ccchhhcCCCccceEEEEc
Q 004584 328 FDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE----SLNNVLLIGMTNRKD--MLDEALLRPGRLEVQVEIS 397 (744)
Q Consensus 328 iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~----~~~~v~vI~~tn~~~--~id~al~r~gRf~~~i~i~ 397 (744)
+||++.+.+ .....++..+.... ...++.+|+++|... .+++.+.+ ||+.++.++
T Consensus 90 lDe~~~~~~-------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 90 IDEIDSLSR-------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred EeChhhhhH-------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 999998721 11222333333222 236789999999877 67788877 988777765
No 298
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=3e-09 Score=113.40 Aligned_cols=161 Identities=16% Similarity=0.118 Sum_probs=105.8
Q ss_pred CCCceeeeeecCCCCChhHHHHHHHhhcCCCE----------------EEEcccccc-c---ccchhhHhhHHHHHHHHH
Q 004584 531 GSPLVTCLLEGPSGSGKTALAATAGIDSDFPF----------------VKIISAESM-I---GLHESTKCAQIVKVFEDA 590 (744)
Q Consensus 531 ~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~----------------i~v~~~~~~-~---g~~~~~~~~~i~~if~~a 590 (744)
...+..+||+||+|+|||++|+++|....+.- ..-+.|+.+ + +....-+.+.++++.+.+
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~ 98 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFV 98 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHH
Confidence 34556789999999999999999997643210 000111111 1 001112456788877766
Q ss_pred h----cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcC
Q 004584 591 Y----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVP 666 (744)
Q Consensus 591 ~----~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p 666 (744)
. .+...|++||++|++. ....++|+..|+..+ .++++|-+|+.++.+.+ -+++|.. .++|+
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~----------~~aaNaLLK~LEEPp---~~~~fiL~t~~~~~ll~-TI~SRc~-~~~~~ 163 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMN----------RNAANALLKSLEEPS---GDTVLLLISHQPSRLLP-TIKSRCQ-QQACP 163 (328)
T ss_pred hhccccCCCeEEEECChhhCC----------HHHHHHHHHHHhCCC---CCeEEEEEECChhhCcH-HHHhhce-eeeCC
Confidence 4 3457899999999984 677888988888854 25566677877777666 5556654 69999
Q ss_pred CCCHHHHHHHHHHcc-CCCHHHHHHHHHhCCCCcHHHHHHHH
Q 004584 667 TLKTDDAKKVLKQLN-VFAEEDVDSASEALNDMPIKKLYMLI 707 (744)
Q Consensus 667 ~~~~~~~~~Il~~~~-~~~~~~~~~~~~~~~~g~ir~l~~~l 707 (744)
+++.++..+.|.+.. ...+++... +...+.|+...++.++
T Consensus 164 ~~~~~~~~~~L~~~~~~~~~~~~~~-~l~la~Gsp~~A~~l~ 204 (328)
T PRK05707 164 LPSNEESLQWLQQALPESDERERIE-LLTLAGGSPLRALQLH 204 (328)
T ss_pred CcCHHHHHHHHHHhcccCChHHHHH-HHHHcCCCHHHHHHHH
Confidence 999999998888643 344444443 3456667666655443
No 299
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.1e-09 Score=108.54 Aligned_cols=178 Identities=22% Similarity=0.297 Sum_probs=114.5
Q ss_pred eeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHh-hHHHHHHHHH----hcCCCeEEEEeccchhhcc
Q 004584 535 VTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKC-AQIVKVFEDA----YKSPLSIIILDDIERLLEY 609 (744)
Q Consensus 535 ~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~-~~i~~if~~a----~~~~~~il~iDEid~l~~~ 609 (744)
.++||.||+|||||.+|+.+|+.++.||.--+...+--.-|.++.. .-+-+++..| .+...+||+|||||+++..
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIark 177 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARK 177 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence 6899999999999999999999999999766554432112233322 2334444443 2445689999999999976
Q ss_pred CC--CCcc-h-hHHHHHHHHHHhccC----CCCC--------------CcEEEEEeCC----------------------
Q 004584 610 VP--IGPR-F-SNIISQTMLVLLKRL----PPKG--------------KKLLVIGTTS---------------------- 645 (744)
Q Consensus 610 ~~--~g~~-~-~~~~~~~Ll~~l~~~----~~~~--------------~~v~vi~~tn---------------------- 645 (744)
.. +..| + .+-+||+||..+++. |+++ .++++|+...
T Consensus 178 SeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~ 257 (408)
T COG1219 178 SENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAE 257 (408)
T ss_pred CCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCccccccc
Confidence 52 2222 2 467999999999883 3322 2455553211
Q ss_pred -CC-C-------C---CCcc---------ccccccceEEEcCCCCHHHHHHHHHHc------------------cCCCHH
Q 004584 646 -EV-S-------F---LDSV---------GICDAFSVTYHVPTLKTDDAKKVLKQL------------------NVFAEE 686 (744)
Q Consensus 646 -~~-~-------~---l~~~---------~l~~rf~~~i~~p~~~~~~~~~Il~~~------------------~~~~~~ 686 (744)
.. + . +.+. .+.+|+..+-.+.+++.+++.+||..- -.|.++
T Consensus 258 ~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~ 337 (408)
T COG1219 258 VKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEE 337 (408)
T ss_pred ccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHH
Confidence 00 0 0 1111 134888988999999999999999851 145566
Q ss_pred HHHHHHHhCC--CCcHHHHHHHHHHHHh
Q 004584 687 DVDSASEALN--DMPIKKLYMLIEMAAQ 712 (744)
Q Consensus 687 ~~~~~~~~~~--~g~ir~l~~~l~~a~~ 712 (744)
.+..+....- .-.+|-|..++|..-.
T Consensus 338 AL~~IA~~A~~rkTGARGLRsI~E~~ll 365 (408)
T COG1219 338 ALKAIAKKAIERKTGARGLRSIIEELLL 365 (408)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 5555554432 5567777777765543
No 300
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=8.8e-09 Score=110.76 Aligned_cols=193 Identities=17% Similarity=0.204 Sum_probs=121.2
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCC-----cEE-e
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME-----PKI-V 286 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~-----~~~-v 286 (744)
+-.|++ +-|.++..+.+ ..++..- +.+..+||+||+|+|||++|+.+|+.+.+.. ... .
T Consensus 19 P~~~~~--l~Gh~~a~~~L-~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~ 83 (351)
T PRK09112 19 PSENTR--LFGHEEAEAFL-AQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA 83 (351)
T ss_pred CCchhh--ccCcHHHHHHH-HHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC
Confidence 345666 89999998888 6655433 2244799999999999999999999996521 100 0
Q ss_pred ----cc-----------cchh---ccc-c-------cchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCC
Q 004584 287 ----NG-----------PEVL---SKF-V-------GETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGS 340 (744)
Q Consensus 287 ----~~-----------~~l~---~~~-~-------g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~ 340 (744)
.| +++. ... . .-+...+|++-+..... +. .+...|++|||+|.+.
T Consensus 84 ~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~-~~---~g~~rVviIDeAd~l~----- 154 (351)
T PRK09112 84 DPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQT-SG---DGNWRIVIIDPADDMN----- 154 (351)
T ss_pred CCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhc-cc---cCCceEEEEEchhhcC-----
Confidence 01 1111 000 0 00123445444333321 11 2234599999999884
Q ss_pred CCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCC
Q 004584 341 TRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSF 420 (744)
Q Consensus 341 ~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~ 420 (744)
....+.||..++. +..+.++|..|+.++.+.|.+++ |+ ..+.|++|+.++..++|+.......
T Consensus 155 --------~~aanaLLk~LEE--pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~---- 217 (351)
T PRK09112 155 --------RNAANAILKTLEE--PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQG---- 217 (351)
T ss_pred --------HHHHHHHHHHHhc--CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccC----
Confidence 2345668888875 33456666667888899999998 77 4899999999999999986321110
Q ss_pred CCCcccHHHHHHhcCCCChHHHHHHHHH
Q 004584 421 LAPDVNLQELAARTKNYSGAELEGVAKS 448 (744)
Q Consensus 421 ~~~~~~l~~la~~t~g~sg~dl~~l~~~ 448 (744)
.++..+..+++.+.| +++....++..
T Consensus 218 -~~~~~~~~i~~~s~G-~pr~Al~ll~~ 243 (351)
T PRK09112 218 -SDGEITEALLQRSKG-SVRKALLLLNY 243 (351)
T ss_pred -CCHHHHHHHHHHcCC-CHHHHHHHHhc
Confidence 123346677777776 44444444433
No 301
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.06 E-value=2.4e-09 Score=113.99 Aligned_cols=226 Identities=18% Similarity=0.237 Sum_probs=125.0
Q ss_pred cccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcC------CCcE----
Q 004584 215 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG------MEPK---- 284 (744)
Q Consensus 215 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~------~~~~---- 284 (744)
.|.. |.|.++.+..++-.++. | ...+++|.|+||+|||+++|+++..+.. .++.
T Consensus 2 pf~~--ivgq~~~~~al~~~~~~-----~---------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~ 65 (337)
T TIGR02030 2 PFTA--IVGQDEMKLALLLNVID-----P---------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPS 65 (337)
T ss_pred Cccc--cccHHHHHHHHHHHhcC-----C---------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCC
Confidence 4666 99999998877443331 1 1247999999999999999999988731 0000
Q ss_pred -----Eeccc-------------------chhc-----ccccchHHHHHHHHHHHHh-cccccCCCCCeeEEEEcCcchh
Q 004584 285 -----IVNGP-------------------EVLS-----KFVGETEKNIRDLFADAEN-DQRTRGDQSDLHVIIFDEIDAI 334 (744)
Q Consensus 285 -----~v~~~-------------------~l~~-----~~~g~~~~~i~~~f~~a~~-~~~~~~~~~~p~Il~iDEid~l 334 (744)
.-+|. ++-. ...|.. .+...++.... ..+..-......+||+||++.+
T Consensus 66 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~--d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L 143 (337)
T TIGR02030 66 DPEMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTL--DIERALTEGVKAFEPGLLARANRGILYIDEVNLL 143 (337)
T ss_pred CccccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecch--hHhhHhhcCCEEeecCcceeccCCEEEecChHhC
Confidence 00000 0000 111211 01111100000 0000000111249999999987
Q ss_pred cccCCCCCCCCccHHHHHHHHHHhccC---------c--cCCCcEEEEEEeCCCC-ccchhhcCCCccceEEEEcCCCH-
Q 004584 335 CKSRGSTRDGTGVHDSIVNQLLTKIDG---------V--ESLNNVLLIGMTNRKD-MLDEALLRPGRLEVQVEISLPDE- 401 (744)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~LL~~~d~---------~--~~~~~v~vI~~tn~~~-~id~al~r~gRf~~~i~i~~Pd~- 401 (744)
. ..+...|+..|+. . ....++++|+++|..+ .+++++.. ||...+.++.|+.
T Consensus 144 ~-------------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~ 208 (337)
T TIGR02030 144 E-------------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDV 208 (337)
T ss_pred C-------------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCH
Confidence 4 2344445555532 1 1124688888888765 58999999 9999999999976
Q ss_pred HHHHHHHHHHHhcccccCC----C----------------------CCccc---HHHHHHhcCCCChHHHHHHHHHHHHH
Q 004584 402 NGRLQILQIHTNKMKENSF----L----------------------APDVN---LQELAARTKNYSGAELEGVAKSAVSF 452 (744)
Q Consensus 402 ~~r~~Il~~~~~~~~~~~~----~----------------------~~~~~---l~~la~~t~g~sg~dl~~l~~~A~~~ 452 (744)
++|.+|++........... . .++.. +..++..+..-+.+.-..+++.|...
T Consensus 209 eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~ 288 (337)
T TIGR02030 209 ELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKAL 288 (337)
T ss_pred HHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
Confidence 8899999874322100000 0 01111 12233333333445555667777666
Q ss_pred HHHhccccCCCCCCCccccceeehhHHHHHHhhh
Q 004584 453 ALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (744)
Q Consensus 453 a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~ 486 (744)
|.-+. ...|+.+|+..+..-+
T Consensus 289 Aal~G-------------R~~V~~dDv~~~a~~v 309 (337)
T TIGR02030 289 AAFEG-------------RTEVTVDDIRRVAVLA 309 (337)
T ss_pred HHHcC-------------CCCCCHHHHHHHHHHH
Confidence 66533 3568999998877644
No 302
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.05 E-value=4.4e-09 Score=111.97 Aligned_cols=170 Identities=22% Similarity=0.356 Sum_probs=102.4
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEe-----
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIV----- 286 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v----- 286 (744)
+.+.|++ |.|+++.+..++..++ .| ...|+||.||+|||||++||++++.+....+..-
T Consensus 12 ~~~pf~~--ivGq~~~k~al~~~~~-----~p---------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~ 75 (350)
T CHL00081 12 PVFPFTA--IVGQEEMKLALILNVI-----DP---------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNS 75 (350)
T ss_pred CCCCHHH--HhChHHHHHHHHHhcc-----CC---------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCC
Confidence 5778998 9999998877743322 22 1258999999999999999999988853221100
Q ss_pred --cccc-----hhccc-------------------ccchHHH------HHHHHHHHHhc-ccccCCCCCeeEEEEcCcch
Q 004584 287 --NGPE-----VLSKF-------------------VGETEKN------IRDLFADAEND-QRTRGDQSDLHVIIFDEIDA 333 (744)
Q Consensus 287 --~~~~-----l~~~~-------------------~g~~~~~------i~~~f~~a~~~-~~~~~~~~~p~Il~iDEid~ 333 (744)
+.++ +.... .|.++.. +...|...... .+..-......+||+||++.
T Consensus 76 ~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInr 155 (350)
T CHL00081 76 HPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNL 155 (350)
T ss_pred CCCChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHh
Confidence 0001 00000 1112221 11122211100 00000011123999999998
Q ss_pred hcccCCCCCCCCccHHHHHHHHHHhccC---------c--cCCCcEEEEEEeCCCC-ccchhhcCCCccceEEEEcCCC-
Q 004584 334 ICKSRGSTRDGTGVHDSIVNQLLTKIDG---------V--ESLNNVLLIGMTNRKD-MLDEALLRPGRLEVQVEISLPD- 400 (744)
Q Consensus 334 l~~~~~~~~~~~~~~~~~~~~LL~~~d~---------~--~~~~~v~vI~~tn~~~-~id~al~r~gRf~~~i~i~~Pd- 400 (744)
+.+ .+...|+..|+. . ....++++|++.|..+ .+.+++.. ||...+.+..|+
T Consensus 156 L~~-------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~ 220 (350)
T CHL00081 156 LDD-------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKD 220 (350)
T ss_pred CCH-------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCC
Confidence 853 334445555532 1 1234688888888765 58999998 999999999997
Q ss_pred HHHHHHHHHHHH
Q 004584 401 ENGRLQILQIHT 412 (744)
Q Consensus 401 ~~~r~~Il~~~~ 412 (744)
.+.+.+|++...
T Consensus 221 ~~~e~~il~~~~ 232 (350)
T CHL00081 221 PELRVKIVEQRT 232 (350)
T ss_pred hHHHHHHHHhhh
Confidence 599999998753
No 303
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.05 E-value=2.7e-09 Score=99.90 Aligned_cols=124 Identities=27% Similarity=0.421 Sum_probs=78.2
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEcccccccccchhhHhhH--HHHHHHHHhcCCCeEEEEeccchhh
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIGLHESTKCAQ--IVKVFEDAYKSPLSIIILDDIERLL 607 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~~~g~~~~~~~~~--i~~if~~a~~~~~~il~iDEid~l~ 607 (744)
...+++++||||||||++++.++... +.+++.+...+............. ....+..+....+.+|+|||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 45789999999999999999999887 777887766553321111100000 1112233345567999999999873
Q ss_pred ccCCCCcchhHHHHHHHHHHhccCCCC---CCcEEEEEeCCCCCC--CCccccccccceEEEcCC
Q 004584 608 EYVPIGPRFSNIISQTMLVLLKRLPPK---GKKLLVIGTTSEVSF--LDSVGICDAFSVTYHVPT 667 (744)
Q Consensus 608 ~~~~~g~~~~~~~~~~Ll~~l~~~~~~---~~~v~vi~~tn~~~~--l~~~~l~~rf~~~i~~p~ 667 (744)
......++..+...... ..++.+|++++.... +++ .+.+||+.++.+|+
T Consensus 98 ----------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~-~~~~r~~~~i~~~~ 151 (151)
T cd00009 98 ----------RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDR-ALYDRLDIRIVIPL 151 (151)
T ss_pred ----------HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcCh-hHHhhhccEeecCC
Confidence 22233444444443221 346788888887663 333 56689988888875
No 304
>PHA02244 ATPase-like protein
Probab=99.04 E-value=3.1e-09 Score=112.25 Aligned_cols=130 Identities=25% Similarity=0.296 Sum_probs=78.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhcCCCcEEeccc----chhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEc
Q 004584 254 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGP----EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFD 329 (744)
Q Consensus 254 ~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~----~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iD 329 (744)
..+|||+||||||||++|+++|..+ +.+++.++.- ++.+ +..........-|-.|... ..+|+||
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~l-g~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~~~---------GgvLiLD 187 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEAL-DLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAFKK---------GGLFFID 187 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh-CCCEEEEecChHHHhhcc-cccccccccchHHHHHhhc---------CCEEEEe
Confidence 4579999999999999999999998 4666666532 1111 1111111010112222221 3499999
Q ss_pred CcchhcccCCCCCCCCccHHHHHHHHHH-----hccC-ccCCCcEEEEEEeCCC-----------CccchhhcCCCccce
Q 004584 330 EIDAICKSRGSTRDGTGVHDSIVNQLLT-----KIDG-VESLNNVLLIGMTNRK-----------DMLDEALLRPGRLEV 392 (744)
Q Consensus 330 Eid~l~~~~~~~~~~~~~~~~~~~~LL~-----~~d~-~~~~~~v~vI~~tn~~-----------~~id~al~r~gRf~~ 392 (744)
|++.+.+. ....++.++. ..++ +....++.+|+|+|.+ ..++++++. ||.
T Consensus 188 EId~a~p~----------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv- 254 (383)
T PHA02244 188 EIDASIPE----------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA- 254 (383)
T ss_pred CcCcCCHH----------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-
Confidence 99987422 1222333332 1111 2234689999999983 467999999 996
Q ss_pred EEEEcCCCHHHHHHHH
Q 004584 393 QVEISLPDENGRLQIL 408 (744)
Q Consensus 393 ~i~i~~Pd~~~r~~Il 408 (744)
.|+++.|++ ....|.
T Consensus 255 ~I~~dyp~~-~E~~i~ 269 (383)
T PHA02244 255 PIEFDYDEK-IEHLIS 269 (383)
T ss_pred EeeCCCCcH-HHHHHh
Confidence 689999984 333444
No 305
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=7e-09 Score=112.13 Aligned_cols=161 Identities=16% Similarity=0.162 Sum_probs=106.3
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhcCCC-------E------EEE-------------cccccc-ccc--chh------
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDSDFP-------F------VKI-------------ISAESM-IGL--HES------ 577 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~~~~-------~------i~v-------------~~~~~~-~g~--~~~------ 577 (744)
.+..+||+||+|+||+++|.++|+..-+. + ..+ .-|+.+ +.. .+.
T Consensus 40 l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~ 119 (365)
T PRK07471 40 LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRT 119 (365)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEecccccccccccc
Confidence 34568999999999999999998654210 0 000 001111 100 011
Q ss_pred -hHhhHHHHHHHHHh----cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCc
Q 004584 578 -TKCAQIVKVFEDAY----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDS 652 (744)
Q Consensus 578 -~~~~~i~~if~~a~----~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~ 652 (744)
-+.+.|+++-+.+. .+.+.|++|||+|.+. ....++|+..++..+. ..++|.+|+.++.+.+
T Consensus 120 ~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~----------~~aanaLLK~LEepp~---~~~~IL~t~~~~~llp 186 (365)
T PRK07471 120 VITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN----------ANAANALLKVLEEPPA---RSLFLLVSHAPARLLP 186 (365)
T ss_pred cccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC----------HHHHHHHHHHHhcCCC---CeEEEEEECCchhchH
Confidence 13456777666543 4567899999999873 5677788888887532 4455557777766654
Q ss_pred cccccccceEEEcCCCCHHHHHHHHHHccCCCHHHHHHHHHhCCCCcHHHHHHHHH
Q 004584 653 VGICDAFSVTYHVPTLKTDDAKKVLKQLNVFAEEDVDSASEALNDMPIKKLYMLIE 708 (744)
Q Consensus 653 ~~l~~rf~~~i~~p~~~~~~~~~Il~~~~~~~~~~~~~~~~~~~~g~ir~l~~~l~ 708 (744)
.+++| +..+.|++++.+++.+++.+.....+++....+...++|+.+.++.+++
T Consensus 187 -ti~SR-c~~i~l~~l~~~~i~~~L~~~~~~~~~~~~~~l~~~s~Gsp~~Al~ll~ 240 (365)
T PRK07471 187 -TIRSR-CRKLRLRPLAPEDVIDALAAAGPDLPDDPRAALAALAEGSVGRALRLAG 240 (365)
T ss_pred -Hhhcc-ceEEECCCCCHHHHHHHHHHhcccCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 34455 5699999999999999999865433333335677888999998887764
No 306
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.02 E-value=1.4e-09 Score=115.85 Aligned_cols=130 Identities=12% Similarity=0.163 Sum_probs=86.8
Q ss_pred CeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCC----------CCCCcEEEEEeCCCCC-CCCccccccccceEE
Q 004584 595 LSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP----------PKGKKLLVIGTTSEVS-FLDSVGICDAFSVTY 663 (744)
Q Consensus 595 ~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~----------~~~~~v~vi~~tn~~~-~l~~~~l~~rf~~~i 663 (744)
..+||||||+++. ..+++.|+..|+.-. ....++++|+++|..+ .+.+ .+..||...+
T Consensus 132 ~GvL~lDEi~~L~----------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~-~LldRf~l~i 200 (337)
T TIGR02030 132 RGILYIDEVNLLE----------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRP-QLLDRFGLHA 200 (337)
T ss_pred CCEEEecChHhCC----------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCH-HHHhhcceEE
Confidence 4799999999974 567788888775421 1124688888887554 3333 6679999999
Q ss_pred EcCCCCH-HHHHHHHHHccC---------------------------------CCHHHHHHHH----HhCCCCcHHHHHH
Q 004584 664 HVPTLKT-DDAKKVLKQLNV---------------------------------FAEEDVDSAS----EALNDMPIKKLYM 705 (744)
Q Consensus 664 ~~p~~~~-~~~~~Il~~~~~---------------------------------~~~~~~~~~~----~~~~~g~ir~l~~ 705 (744)
.+++++. +++.+|+++... ..++++.+.+ .....-+.|..+.
T Consensus 201 ~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~ 280 (337)
T TIGR02030 201 EIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELT 280 (337)
T ss_pred ECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHH
Confidence 9999884 777777776211 1122222222 2222224677777
Q ss_pred HHHHHHhcccCCcccccccCCCCcchhhHHHHHHHHh
Q 004584 706 LIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDMV 742 (744)
Q Consensus 706 ~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~~~~ 742 (744)
+++.|...| ...|+..|+.+|+..+..-+.
T Consensus 281 l~raArA~A-------al~GR~~V~~dDv~~~a~~vL 310 (337)
T TIGR02030 281 LNRAAKALA-------AFEGRTEVTVDDIRRVAVLAL 310 (337)
T ss_pred HHHHHHHHH-------HHcCCCCCCHHHHHHHHHHHH
Confidence 777777664 446999999999999887664
No 307
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.02 E-value=6.2e-09 Score=115.61 Aligned_cols=175 Identities=21% Similarity=0.267 Sum_probs=116.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCc
Q 004584 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEI 331 (744)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEi 331 (744)
++.|-+||+||||-||||||+.+|+.. +..+..+|+++- .+...++.....|-......+..+.|..|+||||
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa-GYsVvEINASDe------Rt~~~v~~kI~~avq~~s~l~adsrP~CLViDEI 396 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA-GYSVVEINASDE------RTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEI 396 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc-CceEEEeccccc------ccHHHHHHHHHHHHhhccccccCCCcceEEEecc
Confidence 445668899999999999999999997 688888998864 3455666666666666656556677999999999
Q ss_pred chhcccCCCCCCCCccHHHHHHHHHHhcc-------CccCC------------CcEEEEEEeCCCCccchhhcCCCccce
Q 004584 332 DAICKSRGSTRDGTGVHDSIVNQLLTKID-------GVESL------------NNVLLIGMTNRKDMLDEALLRPGRLEV 392 (744)
Q Consensus 332 d~l~~~~~~~~~~~~~~~~~~~~LL~~~d-------~~~~~------------~~v~vI~~tn~~~~id~al~r~gRf~~ 392 (744)
|-- ....++.++..+. |-... -.-.|||.+|.. .-|+|+.---|..
T Consensus 397 DGa-------------~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ 461 (877)
T KOG1969|consen 397 DGA-------------PRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAE 461 (877)
T ss_pred cCC-------------cHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceE
Confidence 942 2344454544443 11110 014678888865 4688875446888
Q ss_pred EEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 004584 393 QVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALN 455 (744)
Q Consensus 393 ~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~ 455 (744)
.|.|.+|...-..+=|+..+.+-.. -.+...+..|++.+. .||+..++.-...+.+
T Consensus 462 ii~f~~p~~s~Lv~RL~~IC~rE~m---r~d~~aL~~L~el~~----~DIRsCINtLQfLa~~ 517 (877)
T KOG1969|consen 462 IIAFVPPSQSRLVERLNEICHRENM---RADSKALNALCELTQ----NDIRSCINTLQFLASN 517 (877)
T ss_pred EEEecCCChhHHHHHHHHHHhhhcC---CCCHHHHHHHHHHhc----chHHHHHHHHHHHHHh
Confidence 8999999887766666655543221 112223445555544 4888877776666654
No 308
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.01 E-value=1.4e-08 Score=99.07 Aligned_cols=165 Identities=19% Similarity=0.281 Sum_probs=115.6
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCC--CcEEeccc
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGM--EPKIVNGP 289 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~--~~~~v~~~ 289 (744)
+.+...+ |.|+|.|.+.+++..-... .-.+..+|||+|..|||||++++|+.+++.+. .++.|+..
T Consensus 55 ~~i~L~~--l~Gvd~qk~~L~~NT~~F~----------~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~ 122 (287)
T COG2607 55 DPIDLAD--LVGVDRQKEALVRNTEQFA----------EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKE 122 (287)
T ss_pred CCcCHHH--HhCchHHHHHHHHHHHHHH----------cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHH
Confidence 4577777 9999999998865433211 12345689999999999999999999998544 34555555
Q ss_pred chhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccC-cc-CCCc
Q 004584 290 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDG-VE-SLNN 367 (744)
Q Consensus 290 ~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~-~~-~~~~ 367 (744)
++. .+-.+++..+... ...|||+|++.- +..+.-...|-..+|| +. ...|
T Consensus 123 dl~---------~Lp~l~~~Lr~~~-------~kFIlFcDDLSF------------e~gd~~yK~LKs~LeG~ve~rP~N 174 (287)
T COG2607 123 DLA---------TLPDLVELLRARP-------EKFILFCDDLSF------------EEGDDAYKALKSALEGGVEGRPAN 174 (287)
T ss_pred HHh---------hHHHHHHHHhcCC-------ceEEEEecCCCC------------CCCchHHHHHHHHhcCCcccCCCe
Confidence 442 3445555555432 246999998753 2233445556666776 33 3458
Q ss_pred EEEEEEeCCCCccch--------------------hhcCCCccceEEEEcCCCHHHHHHHHHHHHhccc
Q 004584 368 VLLIGMTNRKDMLDE--------------------ALLRPGRLEVQVEISLPDENGRLQILQIHTNKMK 416 (744)
Q Consensus 368 v~vI~~tn~~~~id~--------------------al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~ 416 (744)
|++.+|+|+...|++ .+.-+.||...+.|++++.++-..|+..+.++..
T Consensus 175 Vl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~ 243 (287)
T COG2607 175 VLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFG 243 (287)
T ss_pred EEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcC
Confidence 999999999766532 1222349999999999999999999999998776
No 309
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.01 E-value=2e-09 Score=103.98 Aligned_cols=160 Identities=14% Similarity=0.111 Sum_probs=104.0
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhcCCC-----EEEEcccccccccchhhHhhHHH---HHHHHHh----cCCCeEEE
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFP-----FVKIISAESMIGLHESTKCAQIV---KVFEDAY----KSPLSIII 599 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~~~~-----~i~v~~~~~~~g~~~~~~~~~i~---~if~~a~----~~~~~il~ 599 (744)
...++++|.||||||||+.+.++|.++=.+ ++.++.++. .....++ +.|.+-+ ...-.||+
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde-------RGIDvVRn~IK~FAQ~kv~lp~grhKIiI 118 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE-------RGIDVVRNKIKMFAQKKVTLPPGRHKIII 118 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc-------cccHHHHHHHHHHHHhhccCCCCceeEEE
Confidence 456899999999999999999999875322 233333322 1112222 3444432 13346999
Q ss_pred EeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCCCCHHHHHHHHH-
Q 004584 600 LDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLK- 678 (744)
Q Consensus 600 iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~- 678 (744)
|||+|++. ...+|+|...|+-... ...+.-++|..+.+-. .+.+| +..++|..+++.++..=|.
T Consensus 119 LDEADSMT----------~gAQQAlRRtMEiyS~---ttRFalaCN~s~KIiE-PIQSR-CAiLRysklsd~qiL~Rl~~ 183 (333)
T KOG0991|consen 119 LDEADSMT----------AGAQQALRRTMEIYSN---TTRFALACNQSEKIIE-PIQSR-CAILRYSKLSDQQILKRLLE 183 (333)
T ss_pred eeccchhh----------hHHHHHHHHHHHHHcc---cchhhhhhcchhhhhh-hHHhh-hHhhhhcccCHHHHHHHHHH
Confidence 99999975 5678888877765433 2345556777664433 22334 4578888888766544333
Q ss_pred ---HccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhc
Q 004584 679 ---QLNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQG 713 (744)
Q Consensus 679 ---~~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~ 713 (744)
.......+|-.+++-..+.|+.|+.++.++.....
T Consensus 184 v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g 221 (333)
T KOG0991|consen 184 VAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNG 221 (333)
T ss_pred HHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhcc
Confidence 33455566777777778899999999999876543
No 310
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.00 E-value=1.9e-10 Score=107.66 Aligned_cols=109 Identities=29% Similarity=0.437 Sum_probs=66.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccch------hcccccc---hHHHHHHHHHHHHhcccccCCCCCeeEE
Q 004584 256 GMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV------LSKFVGE---TEKNIRDLFADAENDQRTRGDQSDLHVI 326 (744)
Q Consensus 256 giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l------~~~~~g~---~~~~i~~~f~~a~~~~~~~~~~~~p~Il 326 (744)
+|||+||||||||++|+.+|+.+ +.++..++++.. ...|.-. ... ....+..+ ...++|+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~-~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~-~~~~l~~a---------~~~~~il 69 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL-GRPVIRINCSSDTTEEDLIGSYDPSNGQFEF-KDGPLVRA---------MRKGGIL 69 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH-TCEEEEEE-TTTSTHHHHHCEEET-TTTTCE-EE-CCCTT---------HHEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-hcceEEEEeccccccccceeeeeeccccccc-cccccccc---------ccceeEE
Confidence 58999999999999999999999 566666655443 2222210 000 00000000 1136799
Q ss_pred EEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCc-----------cCCC------cEEEEEEeCCCC----ccchhhc
Q 004584 327 IFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV-----------ESLN------NVLLIGMTNRKD----MLDEALL 385 (744)
Q Consensus 327 ~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~-----------~~~~------~v~vI~~tn~~~----~id~al~ 385 (744)
+|||++..- ..++..|+..++.- .... ++.+|+|+|+.+ .++++++
T Consensus 70 ~lDEin~a~-------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~ 136 (139)
T PF07728_consen 70 VLDEINRAP-------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALL 136 (139)
T ss_dssp EESSCGG---------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHH
T ss_pred EECCcccCC-------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHH
Confidence 999999752 34555555555421 0111 489999999998 8999999
Q ss_pred CCCcc
Q 004584 386 RPGRL 390 (744)
Q Consensus 386 r~gRf 390 (744)
+ ||
T Consensus 137 ~--Rf 139 (139)
T PF07728_consen 137 D--RF 139 (139)
T ss_dssp T--T-
T ss_pred h--hC
Confidence 9 86
No 311
>PRK15115 response regulator GlrR; Provisional
Probab=99.00 E-value=1.3e-09 Score=122.59 Aligned_cols=167 Identities=21% Similarity=0.281 Sum_probs=110.2
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEccccc--------ccccchhhHh---hHHHHHHHHHhcCCCeEEE
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES--------MIGLHESTKC---AQIVKVFEDAYKSPLSIII 599 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~--------~~g~~~~~~~---~~i~~if~~a~~~~~~il~ 599 (744)
...++++|++|||||++|++++..+ +.+|+.++|... ++|...+... ..-...|.. ...+.||
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ 233 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQA---AEGGTLF 233 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEE---CCCCEEE
Confidence 3568999999999999999998775 478999988753 1111100000 000012222 2347899
Q ss_pred EeccchhhccCCCCcchhHHHHHHHHHHhccCCC--------CCCcEEEEEeCCCCCCCCcccccccc---------ceE
Q 004584 600 LDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPP--------KGKKLLVIGTTSEVSFLDSVGICDAF---------SVT 662 (744)
Q Consensus 600 iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~--------~~~~v~vi~~tn~~~~l~~~~l~~rf---------~~~ 662 (744)
|||||.|. ...+..|+..++.-.. ...++.+|++|+.. +......++| ...
T Consensus 234 l~~i~~l~----------~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~~~~f~~~l~~~l~~~~ 301 (444)
T PRK15115 234 LDEIGDMP----------APLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMARGEFREDLYYRLNVVS 301 (444)
T ss_pred EEccccCC----------HHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHHcCCccHHHHHhhceee
Confidence 99999984 5677778877764210 11267888888864 3333333455 467
Q ss_pred EEcCCCC--HHHHHHHHHHc--------c----CCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhccc
Q 004584 663 YHVPTLK--TDDAKKVLKQL--------N----VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQ 715 (744)
Q Consensus 663 i~~p~~~--~~~~~~Il~~~--------~----~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~ 715 (744)
|.+||+. .+|+..+++++ + .++++.+..+..+-++||+|+|.++++.|...+.
T Consensus 302 i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~~ 368 (444)
T PRK15115 302 LKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTS 368 (444)
T ss_pred ecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 8899998 57777776652 1 2556666666666679999999999999887654
No 312
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=7.2e-09 Score=110.80 Aligned_cols=180 Identities=15% Similarity=0.267 Sum_probs=118.8
Q ss_pred cccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhc-
Q 004584 215 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS- 293 (744)
Q Consensus 215 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~- 293 (744)
+|++ |.|.++.++.+ +.++... +.++.+||+||+|+|||++|+++|+.+.+.... -+.+++..
T Consensus 2 ~~~~--i~g~~~~~~~l-~~~~~~~------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~-~~h~D~~~~ 65 (313)
T PRK05564 2 SFHT--IIGHENIKNRI-KNSIIKN------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQ-REYVDIIEF 65 (313)
T ss_pred Chhh--ccCcHHHHHHH-HHHHHcC------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCC-CCCCCeEEe
Confidence 4677 88999998888 6655332 234578999999999999999999988543211 01112211
Q ss_pred -cccc--chHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEE
Q 004584 294 -KFVG--ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLL 370 (744)
Q Consensus 294 -~~~g--~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~v 370 (744)
.+.| -.-..++++.+.+.. .|..+ ...|++||++|.+. ....+.||..++. +..++++
T Consensus 66 ~~~~~~~i~v~~ir~~~~~~~~-~p~~~---~~kv~iI~~ad~m~-------------~~a~naLLK~LEe--pp~~t~~ 126 (313)
T PRK05564 66 KPINKKSIGVDDIRNIIEEVNK-KPYEG---DKKVIIIYNSEKMT-------------EQAQNAFLKTIEE--PPKGVFI 126 (313)
T ss_pred ccccCCCCCHHHHHHHHHHHhc-CcccC---CceEEEEechhhcC-------------HHHHHHHHHHhcC--CCCCeEE
Confidence 1011 123456776665433 23222 34599999998873 3456788888884 4566777
Q ss_pred EEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCCh
Q 004584 371 IGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSG 439 (744)
Q Consensus 371 I~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg 439 (744)
|.+|+.++.+.|.+++ |+. .++|+.|+.++....++...... ++..+..++..+.|-.+
T Consensus 127 il~~~~~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 127 ILLCENLEQILDTIKS--RCQ-IYKLNRLSKEEIEKFISYKYNDI-------KEEEKKSAIAFSDGIPG 185 (313)
T ss_pred EEEeCChHhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHHhcCC-------CHHHHHHHHHHcCCCHH
Confidence 7777889999999998 664 88999999998888776554321 23345667777766433
No 313
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.98 E-value=4.3e-09 Score=118.51 Aligned_cols=169 Identities=20% Similarity=0.224 Sum_probs=110.9
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEcccccc--------cccchhhHh---hHHHHHHHHHhcCCCeEEE
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESM--------IGLHESTKC---AQIVKVFEDAYKSPLSIII 599 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~~--------~g~~~~~~~---~~i~~if~~a~~~~~~il~ 599 (744)
..+++++|++||||+++|++++..+ +.+|+.++|...- +|...+... ......|.. ...++||
T Consensus 162 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ 238 (445)
T TIGR02915 162 DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEY---AHGGTLF 238 (445)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeE---CCCCEEE
Confidence 4678999999999999999998765 4689999887641 121100000 000111222 3357899
Q ss_pred EeccchhhccCCCCcchhHHHHHHHHHHhccCC--------CCCCcEEEEEeCCCCC-------CCCcccccccc-ceEE
Q 004584 600 LDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP--------PKGKKLLVIGTTSEVS-------FLDSVGICDAF-SVTY 663 (744)
Q Consensus 600 iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--------~~~~~v~vi~~tn~~~-------~l~~~~l~~rf-~~~i 663 (744)
||||+.|. ..+++.|+..++.-. ....++.+|++|+..- .+.+ .|..|+ ...|
T Consensus 239 l~~i~~l~----------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~-~L~~~l~~~~i 307 (445)
T TIGR02915 239 LDEIGDLP----------LNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFRE-DLFYRIAEISI 307 (445)
T ss_pred EechhhCC----------HHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccH-HHHHHhcccee
Confidence 99999984 567777777775421 0112578888887641 1111 122333 3678
Q ss_pred EcCCCC--HHHHHHHHHHc--------c----CCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccC
Q 004584 664 HVPTLK--TDDAKKVLKQL--------N----VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQG 716 (744)
Q Consensus 664 ~~p~~~--~~~~~~Il~~~--------~----~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~ 716 (744)
++||+. .+|+..+++++ + .++++.+..+.++-++||+|+|.++++.|...+..
T Consensus 308 ~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~~~ 374 (445)
T TIGR02915 308 TIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAEG 374 (445)
T ss_pred cCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCC
Confidence 999999 67877777752 1 35666666666777799999999999999876553
No 314
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.98 E-value=2e-08 Score=103.15 Aligned_cols=123 Identities=9% Similarity=0.152 Sum_probs=80.9
Q ss_pred CeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCC-------CCCCccc----cccccceEE
Q 004584 595 LSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEV-------SFLDSVG----ICDAFSVTY 663 (744)
Q Consensus 595 ~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~-------~~l~~~~----l~~rf~~~i 663 (744)
|+||||||+|.|- =.....|...|+. .... ++|.+||+- +...|.+ +.+|. .++
T Consensus 292 pGVLFIDEvHmLD----------IE~FsFlnrAlEs---e~aP-Iii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl-lII 356 (450)
T COG1224 292 PGVLFIDEVHMLD----------IECFSFLNRALES---ELAP-IIILATNRGMTKIRGTDIESPHGIPLDLLDRL-LII 356 (450)
T ss_pred cceEEEechhhhh----------HHHHHHHHHHhhc---ccCc-EEEEEcCCceeeecccCCcCCCCCCHhhhhhe-eEE
Confidence 7899999999872 2233334333332 2223 555577762 2233333 23443 367
Q ss_pred EcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHhCC-CCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHH
Q 004584 664 HVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALN-DMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCL 738 (744)
Q Consensus 664 ~~p~~~~~~~~~Il~~~----~~~~~~~~~~~~~~~~-~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al 738 (744)
..-||+.++++.|++.. +...+++....+.... .-++|.+++++.-|...|+.+ |+..|..+|+++|.
T Consensus 357 ~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r-------g~~~V~~~dVe~a~ 429 (450)
T COG1224 357 STRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR-------GSKRVEVEDVERAK 429 (450)
T ss_pred ecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh-------CCCeeehhHHHHHH
Confidence 78899999999999963 3334445455454444 889999999999888877653 77889999999887
Q ss_pred H
Q 004584 739 Q 739 (744)
Q Consensus 739 ~ 739 (744)
.
T Consensus 430 ~ 430 (450)
T COG1224 430 E 430 (450)
T ss_pred H
Confidence 6
No 315
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=9.9e-09 Score=110.96 Aligned_cols=180 Identities=19% Similarity=0.231 Sum_probs=117.9
Q ss_pred ccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE--------
Q 004584 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI-------- 285 (744)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~-------- 285 (744)
-.+++ |.|.++.++.+ .+++..- +.+..+||+||+|+||+++|.++|+.+.+.....
T Consensus 16 ~~~~~--iiGq~~~~~~L-~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~ 80 (365)
T PRK07471 16 RETTA--LFGHAAAEAAL-LDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP 80 (365)
T ss_pred Cchhh--ccChHHHHHHH-HHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 35666 88999988887 5555432 2345799999999999999999999985432100
Q ss_pred ----e--cc-----------cchhcccc---cc--------hHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhccc
Q 004584 286 ----V--NG-----------PEVLSKFV---GE--------TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKS 337 (744)
Q Consensus 286 ----v--~~-----------~~l~~~~~---g~--------~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~ 337 (744)
+ .| +++..-.. +. ....+|++-+.+... ...+.+.|++|||+|.+.
T Consensus 81 ~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~----~~~~~~kVviIDead~m~-- 154 (365)
T PRK07471 81 TSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLT----AAEGGWRVVIVDTADEMN-- 154 (365)
T ss_pred ccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcC----cccCCCEEEEEechHhcC--
Confidence 0 00 11110000 10 123456555544322 223457799999999873
Q ss_pred CCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccc
Q 004584 338 RGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKE 417 (744)
Q Consensus 338 ~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~ 417 (744)
....+.||..++. ...+.++|.+|+.++.+.|.+++ |+. .+.|++|+.++..++|......
T Consensus 155 -----------~~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~~~--- 215 (365)
T PRK07471 155 -----------ANAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAGPD--- 215 (365)
T ss_pred -----------HHHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhccc---
Confidence 3456778888873 44567888899999999999988 754 7899999999999998765321
Q ss_pred cCCCCCcccHHHHHHhcCCC
Q 004584 418 NSFLAPDVNLQELAARTKNY 437 (744)
Q Consensus 418 ~~~~~~~~~l~~la~~t~g~ 437 (744)
..+..+..++..+.|-
T Consensus 216 ----~~~~~~~~l~~~s~Gs 231 (365)
T PRK07471 216 ----LPDDPRAALAALAEGS 231 (365)
T ss_pred ----CCHHHHHHHHHHcCCC
Confidence 1222235677777663
No 316
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.97 E-value=2.9e-09 Score=108.96 Aligned_cols=167 Identities=20% Similarity=0.248 Sum_probs=115.2
Q ss_pred eeeeeecCCCCChhHHHHHHHhhc---CCCEEEEccccc--------ccccchhhHhhHHHHHHHHHhcCCCeEEEEecc
Q 004584 535 VTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES--------MIGLHESTKCAQIVKVFEDAYKSPLSIIILDDI 603 (744)
Q Consensus 535 ~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~--------~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEi 603 (744)
..+|+.|.+||||..+|++.+..+ ..||+.++|+.. ++|+.++.. --..+|+.|.+ +-+|+|||
T Consensus 228 APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~~--gk~GffE~Ang---GTVlLDeI 302 (511)
T COG3283 228 APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGDE--GKKGFFEQANG---GTVLLDEI 302 (511)
T ss_pred CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCCC--CccchhhhccC---CeEEeehh
Confidence 458999999999999999988665 679999999865 466655422 23468888876 45999999
Q ss_pred chhhccCCCCcchhHHHHHHHHHHhccCC-----C---CCCcEEEEEeCCCC--CCCCccccc----cccc-eEEEcCCC
Q 004584 604 ERLLEYVPIGPRFSNIISQTMLVLLKRLP-----P---KGKKLLVIGTTSEV--SFLDSVGIC----DAFS-VTYHVPTL 668 (744)
Q Consensus 604 d~l~~~~~~g~~~~~~~~~~Ll~~l~~~~-----~---~~~~v~vi~~tn~~--~~l~~~~l~----~rf~-~~i~~p~~ 668 (744)
..+ |..++..|+.+++.-. + ...+|.|||||..+ ++.+.-.++ -|.. ..+++||+
T Consensus 303 gEm----------Sp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpL 372 (511)
T COG3283 303 GEM----------SPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPL 372 (511)
T ss_pred hhc----------CHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCcc
Confidence 886 4678888888886521 1 12368999999765 122221222 2222 45789998
Q ss_pred C--HHHHHHHHHHc------------cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccC
Q 004584 669 K--TDDAKKVLKQL------------NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQG 716 (744)
Q Consensus 669 ~--~~~~~~Il~~~------------~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~ 716 (744)
. .+++.-+.+.+ ..++++-...+..+-|+|++|++.|.+.+|....+.
T Consensus 373 Rer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~Eg 434 (511)
T COG3283 373 RERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALTLLEG 434 (511)
T ss_pred ccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHHHHHHHHhcc
Confidence 8 55666555542 244444444455556799999999999999887654
No 317
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.97 E-value=3.6e-09 Score=120.01 Aligned_cols=169 Identities=17% Similarity=0.233 Sum_probs=112.4
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEcccccc--------cccchhhHh---hHHHHHHHHHhcCCCeEEE
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESM--------IGLHESTKC---AQIVKVFEDAYKSPLSIII 599 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~~--------~g~~~~~~~---~~i~~if~~a~~~~~~il~ 599 (744)
...+++.|++|||||++|++++..+ +.+|+.++|...- +|...+... ......|..+ ..+.||
T Consensus 161 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~ 237 (469)
T PRK10923 161 SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQA---DGGTLF 237 (469)
T ss_pred CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEE
Confidence 4679999999999999999999876 4689999987641 121110000 0000112222 346899
Q ss_pred EeccchhhccCCCCcchhHHHHHHHHHHhccCC--------CCCCcEEEEEeCCCCC--CCCc----ccccccc-ceEEE
Q 004584 600 LDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP--------PKGKKLLVIGTTSEVS--FLDS----VGICDAF-SVTYH 664 (744)
Q Consensus 600 iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--------~~~~~v~vi~~tn~~~--~l~~----~~l~~rf-~~~i~ 664 (744)
||||+.|. ...+..|+..++.-. ....++.+|+||+..- .... ..+..|| ...|.
T Consensus 238 l~~i~~l~----------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~ 307 (469)
T PRK10923 238 LDEIGDMP----------LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVH 307 (469)
T ss_pred EeccccCC----------HHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeec
Confidence 99999984 567777777776531 1123568888887641 1111 1233455 47899
Q ss_pred cCCCC--HHHHHHHHHHc--------c----CCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhccc
Q 004584 665 VPTLK--TDDAKKVLKQL--------N----VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQ 715 (744)
Q Consensus 665 ~p~~~--~~~~~~Il~~~--------~----~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~ 715 (744)
+||+. .+|+..+++++ + .++++.+..+..+-++||+|+|.++++.+...+.
T Consensus 308 ~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~~ 372 (469)
T PRK10923 308 LPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAA 372 (469)
T ss_pred CCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 99999 77888877763 1 3566666666777779999999999999988754
No 318
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.97 E-value=5.4e-08 Score=100.04 Aligned_cols=99 Identities=21% Similarity=0.114 Sum_probs=71.3
Q ss_pred EEEEEEeCC------------CCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcC
Q 004584 368 VLLIGMTNR------------KDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (744)
Q Consensus 368 v~vI~~tn~------------~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~ 435 (744)
-++|.+||+ |..|+..|+. |+- .|.-.+++.++.++|+++.++.... ..++..++.|+....
T Consensus 321 PIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rll-II~t~py~~~EireIi~iRa~ee~i---~l~~~Ale~L~~ig~ 394 (450)
T COG1224 321 PIIILATNRGMTKIRGTDIESPHGIPLDLLD--RLL-IISTRPYSREEIREIIRIRAKEEDI---ELSDDALEYLTDIGE 394 (450)
T ss_pred cEEEEEcCCceeeecccCCcCCCCCCHhhhh--hee-EEecCCCCHHHHHHHHHHhhhhhcc---ccCHHHHHHHHhhch
Confidence 366777887 5567777776 654 5677788999999999988765432 335556888888877
Q ss_pred CCChHHHHHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHHhh
Q 004584 436 NYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYE 485 (744)
Q Consensus 436 g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~ 485 (744)
--+-+.-.+|+.-|...|..|. ...|..+|.+.|.+-
T Consensus 395 etSLRYa~qLL~pa~iiA~~rg-------------~~~V~~~dVe~a~~l 431 (450)
T COG1224 395 ETSLRYAVQLLTPASIIAKRRG-------------SKRVEVEDVERAKEL 431 (450)
T ss_pred hhhHHHHHHhccHHHHHHHHhC-------------CCeeehhHHHHHHHH
Confidence 7777777888888888887763 235777787776553
No 319
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=9.4e-09 Score=107.81 Aligned_cols=182 Identities=25% Similarity=0.324 Sum_probs=121.6
Q ss_pred eeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccc-cccchhhHhhHHHHHHHHH----hcCCCeEEEEeccchhhcc
Q 004584 535 VTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM-IGLHESTKCAQIVKVFEDA----YKSPLSIIILDDIERLLEY 609 (744)
Q Consensus 535 ~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~-~g~~~~~~~~~i~~if~~a----~~~~~~il~iDEid~l~~~ 609 (744)
.++||.||+|+|||.+|+.+|+..+.||.-.+|..+- .||-...-+.-|.+++..| .+....|+||||+|+|...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 6899999999999999999999999999888777653 3332222233566777665 2456689999999999854
Q ss_pred CC-CC-cc--hhHHHHHHHHHHhccC----CCC--------------CCcEEEEEeC--CCCC-----------------
Q 004584 610 VP-IG-PR--FSNIISQTMLVLLKRL----PPK--------------GKKLLVIGTT--SEVS----------------- 648 (744)
Q Consensus 610 ~~-~g-~~--~~~~~~~~Ll~~l~~~----~~~--------------~~~v~vi~~t--n~~~----------------- 648 (744)
.+ ++ .| ..+-+||+||.++++. +.+ ..++++|+.- +..+
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~ 386 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAP 386 (564)
T ss_pred CccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCC
Confidence 42 11 11 2467999999999872 111 1245555321 1000
Q ss_pred ------------------------CCC---cc---------ccccccceEEEcCCCCHHHHHHHHHHc------------
Q 004584 649 ------------------------FLD---SV---------GICDAFSVTYHVPTLKTDDAKKVLKQL------------ 680 (744)
Q Consensus 649 ------------------------~l~---~~---------~l~~rf~~~i~~p~~~~~~~~~Il~~~------------ 680 (744)
+|+ +. .+.+||...+.|..++.+++..||..-
T Consensus 387 s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~lf 466 (564)
T KOG0745|consen 387 SSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKKLF 466 (564)
T ss_pred CCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHHHHHHHHh
Confidence 000 00 134999999999999999999999851
Q ss_pred ------cCCCHHHHHHHHHhCC--CCcHHHHHHHHHHHHhcccC
Q 004584 681 ------NVFAEEDVDSASEALN--DMPIKKLYMLIEMAAQGEQG 716 (744)
Q Consensus 681 ------~~~~~~~~~~~~~~~~--~g~ir~l~~~l~~a~~~a~~ 716 (744)
-.|++..+..+.+..- .-.+|-|..++|.+...+.-
T Consensus 467 ~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamf 510 (564)
T KOG0745|consen 467 GMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMF 510 (564)
T ss_pred ccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhcc
Confidence 1355555444433221 67789999999988777653
No 320
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.97 E-value=2.4e-08 Score=106.40 Aligned_cols=130 Identities=15% Similarity=0.207 Sum_probs=85.3
Q ss_pred CeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCC----------CCCCcEEEEEeCCCCC-CCCccccccccceEE
Q 004584 595 LSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP----------PKGKKLLVIGTTSEVS-FLDSVGICDAFSVTY 663 (744)
Q Consensus 595 ~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~----------~~~~~v~vi~~tn~~~-~l~~~~l~~rf~~~i 663 (744)
.++||+|||+++. ..+++.|+..|+.-. ....++++|+|.|..+ .+.+ .+..||...+
T Consensus 145 ~GiL~lDEInrL~----------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~-~LldRf~l~i 213 (350)
T CHL00081 145 RGILYVDEVNLLD----------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRP-QLLDRFGMHA 213 (350)
T ss_pred CCEEEecChHhCC----------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCH-HHHHHhCcee
Confidence 4799999999984 567777887775410 1124688888888655 3333 6679999999
Q ss_pred EcCCCC-HHHHHHHHHHccCC-----------------CHHHHHHHHHhC--------------------CCCcHHHHHH
Q 004584 664 HVPTLK-TDDAKKVLKQLNVF-----------------AEEDVDSASEAL--------------------NDMPIKKLYM 705 (744)
Q Consensus 664 ~~p~~~-~~~~~~Il~~~~~~-----------------~~~~~~~~~~~~--------------------~~g~ir~l~~ 705 (744)
.+..++ .++..+|+++...+ ..+++..+-..+ ..-+.|..+.
T Consensus 214 ~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~ 293 (350)
T CHL00081 214 EIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIV 293 (350)
T ss_pred ecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHH
Confidence 999888 57888888763111 112222222111 1234666666
Q ss_pred HHHHHHhcccCCcccccccCCCCcchhhHHHHHHHHh
Q 004584 706 LIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDMV 742 (744)
Q Consensus 706 ~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~~~~ 742 (744)
+++.|... |...|+..|+.+|+..+..-+.
T Consensus 294 l~raArA~-------Aal~GR~~V~pdDv~~~a~~vL 323 (350)
T CHL00081 294 TNRAAKAL-------AAFEGRTEVTPKDIFKVITLCL 323 (350)
T ss_pred HHHHHHHH-------HHHcCCCCCCHHHHHHHHHHHH
Confidence 66666555 3457999999999999987664
No 321
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.95 E-value=4.3e-09 Score=97.63 Aligned_cols=128 Identities=23% Similarity=0.210 Sum_probs=78.7
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhcCCC---EEEEcccccccc-------------cchhhHhhHHHHHHHHHhcCCCeE
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDSDFP---FVKIISAESMIG-------------LHESTKCAQIVKVFEDAYKSPLSI 597 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~~~~---~i~v~~~~~~~g-------------~~~~~~~~~i~~if~~a~~~~~~i 597 (744)
..+++|+||||||||++++.+|...... ++.+.+...... ............++..++...+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4679999999999999999999888765 666644432111 111233446778888888877899
Q ss_pred EEEeccchhhccCCCCcchhHHHHHHH--HHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCCC
Q 004584 598 IILDDIERLLEYVPIGPRFSNIISQTM--LVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTL 668 (744)
Q Consensus 598 l~iDEid~l~~~~~~g~~~~~~~~~~L--l~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~ 668 (744)
||+||++.+.... ......... ...... .......+|+++|......+..+..|++..+.++.+
T Consensus 82 iiiDei~~~~~~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAE-----QEALLLLLEELRLLLLL--KSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHH-----HHHHHHhhhhhHHHHHH--HhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 9999999986321 011110000 000001 112356788888863333444555688888877654
No 322
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=1.7e-08 Score=106.99 Aligned_cols=188 Identities=17% Similarity=0.194 Sum_probs=122.1
Q ss_pred cccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCc---------EE
Q 004584 215 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEP---------KI 285 (744)
Q Consensus 215 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~---------~~ 285 (744)
.|++ |-|.++.++.+ ++++..--. +..+||+||+|+||+++|.++|+.+.+... ..
T Consensus 2 ~f~~--iiGq~~~~~~L-~~~i~~~rl------------~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~ 66 (314)
T PRK07399 2 LFAN--LIGQPLAIELL-TAAIKQNRI------------APAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEE 66 (314)
T ss_pred cHHH--hCCHHHHHHHH-HHHHHhCCC------------CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhccccc
Confidence 4677 99999998887 666644322 347999999999999999999999854320 01
Q ss_pred ecccchhccc-----ccc--------------------hHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCC
Q 004584 286 VNGPEVLSKF-----VGE--------------------TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGS 340 (744)
Q Consensus 286 v~~~~l~~~~-----~g~--------------------~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~ 340 (744)
.+.+++.--+ .|. .-..+|++.+.+... |.. +...|++||++|.+.
T Consensus 67 ~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~-p~~---~~~kVvII~~ae~m~----- 137 (314)
T PRK07399 67 GNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRP-PLE---APRKVVVIEDAETMN----- 137 (314)
T ss_pred CCCCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccC-ccc---CCceEEEEEchhhcC-----
Confidence 1222222000 011 112456665554432 222 234699999999873
Q ss_pred CCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCC
Q 004584 341 TRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSF 420 (744)
Q Consensus 341 ~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~ 420 (744)
....+.||+.++... +.++|..|+.++.+-|.+++ |+. .+.|+.|+.++..++|+.....-
T Consensus 138 --------~~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rcq-~i~f~~l~~~~~~~~L~~~~~~~----- 198 (314)
T PRK07399 138 --------EAAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RCQ-IIPFYRLSDEQLEQVLKRLGDEE----- 198 (314)
T ss_pred --------HHHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hce-EEecCCCCHHHHHHHHHHhhccc-----
Confidence 345677888888543 44677788899999999999 754 78999999999999998653210
Q ss_pred CCCcccHHHHHHhcCCCChHHHHHHHH
Q 004584 421 LAPDVNLQELAARTKNYSGAELEGVAK 447 (744)
Q Consensus 421 ~~~~~~l~~la~~t~g~sg~dl~~l~~ 447 (744)
..+.+...++..+.| +++....+++
T Consensus 199 -~~~~~~~~l~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 199 -ILNINFPELLALAQG-SPGAAIANIE 223 (314)
T ss_pred -cchhHHHHHHHHcCC-CHHHHHHHHH
Confidence 112235678888877 4444433333
No 323
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.95 E-value=4.9e-09 Score=97.26 Aligned_cols=127 Identities=28% Similarity=0.389 Sum_probs=80.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhcCC--CcEEecccchhcc--------------cccchHHHHHHHHHHHHhccccc
Q 004584 254 VKGMLLYGPPGTGKTLMARQIGKMLNGM--EPKIVNGPEVLSK--------------FVGETEKNIRDLFADAENDQRTR 317 (744)
Q Consensus 254 ~~giLL~GppGtGKT~lar~la~~l~~~--~~~~v~~~~l~~~--------------~~g~~~~~i~~~f~~a~~~~~~~ 317 (744)
+..++|+||||||||++++.++..+... .++.+++...... .........+.+++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 78 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLK--- 78 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcC---
Confidence 3579999999999999999999999655 3666766654332 12344556777787777653
Q ss_pred CCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHH--HHhccCccCCCcEEEEEEeCC-CCccchhhcCCCccceEE
Q 004584 318 GDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL--LTKIDGVESLNNVLLIGMTNR-KDMLDEALLRPGRLEVQV 394 (744)
Q Consensus 318 ~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~L--L~~~d~~~~~~~v~vI~~tn~-~~~id~al~r~gRf~~~i 394 (744)
+.+|+|||++.+...... ...... ...........+..+|+++|. ....+..+.+ |++..+
T Consensus 79 -----~~viiiDei~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~ 142 (148)
T smart00382 79 -----PDVLILDEITSLLDAEQE---------ALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRI 142 (148)
T ss_pred -----CCEEEEECCcccCCHHHH---------HHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEE
Confidence 459999999998633211 111000 000111123356888999886 3344555555 888888
Q ss_pred EEcCC
Q 004584 395 EISLP 399 (744)
Q Consensus 395 ~i~~P 399 (744)
.++.+
T Consensus 143 ~~~~~ 147 (148)
T smart00382 143 VLLLI 147 (148)
T ss_pred EecCC
Confidence 77654
No 324
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.95 E-value=4.4e-09 Score=122.32 Aligned_cols=189 Identities=13% Similarity=0.183 Sum_probs=116.3
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhc-----------------------------------CCCEEEEcccc---cccccc
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDS-----------------------------------DFPFVKIISAE---SMIGLH 575 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~-----------------------------------~~~~i~v~~~~---~~~g~~ 575 (744)
..++||.|++|||||++|++++..+ ..+|+.+.... .++|..
T Consensus 25 ~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~ 104 (633)
T TIGR02442 25 IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSL 104 (633)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcc
Confidence 3679999999999999999999876 24555542221 133321
Q ss_pred hhhHh------hHHHHHHHHHhcCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCC----------CCCCcEE
Q 004584 576 ESTKC------AQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP----------PKGKKLL 639 (744)
Q Consensus 576 ~~~~~------~~i~~if~~a~~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~----------~~~~~v~ 639 (744)
.-... ..-..++.. ...++||||||+.+. ..+++.|+..|+.-. ....++.
T Consensus 105 d~~~~l~~g~~~~~~G~L~~---A~~GiL~lDEi~~l~----------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~ 171 (633)
T TIGR02442 105 DIERALREGEKAFQPGLLAE---AHRGILYIDEVNLLD----------DHLVDVLLDAAAMGVNRVEREGLSVSHPARFV 171 (633)
T ss_pred cHHHHhhcCCeeecCcceee---cCCCeEEeChhhhCC----------HHHHHHHHHHHhcCCEEEEECCceeeecCCeE
Confidence 10000 000111112 233699999999984 677888888886421 1123689
Q ss_pred EEEeCCCCCCCCccccccccceEEEcCCCC-HHHHHHHHHHcc---------------------------------CCCH
Q 004584 640 VIGTTSEVSFLDSVGICDAFSVTYHVPTLK-TDDAKKVLKQLN---------------------------------VFAE 685 (744)
Q Consensus 640 vi~~tn~~~~l~~~~l~~rf~~~i~~p~~~-~~~~~~Il~~~~---------------------------------~~~~ 685 (744)
+|+|+|..+..-+..+..||+..+.++.+. .++..+++++.. ...+
T Consensus 172 lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is 251 (633)
T TIGR02442 172 LIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRIS 251 (633)
T ss_pred EEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCC
Confidence 999988543222236779999999999876 455555555310 1112
Q ss_pred HHHHHHHHhCC---CC-cHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHHHHh
Q 004584 686 EDVDSASEALN---DM-PIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDMV 742 (744)
Q Consensus 686 ~~~~~~~~~~~---~g-~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~~~~ 742 (744)
+++...+..++ +. +.|..+.+++.|...|. ..|+..|+.+|+.+|+.-++
T Consensus 252 ~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~Aa-------L~gr~~V~~~Dv~~A~~lvL 305 (633)
T TIGR02442 252 DSLIRFISELCIEFGVDGHRADIVMARAARALAA-------LDGRRRVTAEDVREAAELVL 305 (633)
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHH-------HcCCCcCCHHHHHHHHHHHh
Confidence 22222222222 33 47777777777766643 46899999999999998765
No 325
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.95 E-value=1.4e-08 Score=106.28 Aligned_cols=199 Identities=13% Similarity=0.132 Sum_probs=114.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhcCCCcEE---ecc----cchhc---cccc-----ch-HHHHHHHHHHHHhcccccCC
Q 004584 256 GMLLYGPPGTGKTLMARQIGKMLNGMEPKI---VNG----PEVLS---KFVG-----ET-EKNIRDLFADAENDQRTRGD 319 (744)
Q Consensus 256 giLL~GppGtGKT~lar~la~~l~~~~~~~---v~~----~~l~~---~~~g-----~~-~~~i~~~f~~a~~~~~~~~~ 319 (744)
-++|+||+|+|||++++.+++.+....+.. ++. .+++. ...| .. ....+.+........ .
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~----~ 120 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQF----A 120 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH----h
Confidence 478999999999999999999885332221 111 11110 0011 11 111222222111100 0
Q ss_pred CCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCC---cc----chhhcCCCccce
Q 004584 320 QSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKD---ML----DEALLRPGRLEV 392 (744)
Q Consensus 320 ~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~---~i----d~al~r~gRf~~ 392 (744)
...+.+|+|||++.+.+. ....+..+..... .....+.|+.+ ..++ .+ ...+.+ |+..
T Consensus 121 ~~~~~vliiDe~~~l~~~----------~~~~l~~l~~~~~--~~~~~~~vvl~-g~~~~~~~l~~~~~~~l~~--r~~~ 185 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPE----------LLEELRMLSNFQT--DNAKLLQIFLV-GQPEFRETLQSPQLQQLRQ--RIIA 185 (269)
T ss_pred CCCCeEEEEECcccCCHH----------HHHHHHHHhCccc--CCCCeEEEEEc-CCHHHHHHHcCchhHHHHh--heee
Confidence 112569999999987411 1122223322211 12222333333 2322 11 123445 7777
Q ss_pred EEEEcCCCHHHHHHHHHHHHhccccc-CCCCCcccHHHHHHhcCCCChHHHHHHHHHHHHHHHHhccccCCCCCCCcccc
Q 004584 393 QVEISLPDENGRLQILQIHTNKMKEN-SFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEES 471 (744)
Q Consensus 393 ~i~i~~Pd~~~r~~Il~~~~~~~~~~-~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~ 471 (744)
.+++++.+.++..+++...++..... .....+..++.+++.+.|.. +.+..+|..+...|..+. .
T Consensus 186 ~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~-------------~ 251 (269)
T TIGR03015 186 SCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEE-------------K 251 (269)
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcC-------------C
Confidence 89999999999999999887654321 11234457889999999965 559999999998887643 2
Q ss_pred ceeehhHHHHHHhhhc
Q 004584 472 IKVTMDDFLHALYEIV 487 (744)
Q Consensus 472 ~~it~~df~~al~~~~ 487 (744)
..|+.+++..++.++.
T Consensus 252 ~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 252 REIGGEEVREVIAEID 267 (269)
T ss_pred CCCCHHHHHHHHHHhh
Confidence 3589999998887653
No 326
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=1e-08 Score=109.25 Aligned_cols=159 Identities=19% Similarity=0.258 Sum_probs=107.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE---------------ecccchhcc---cc--cchHHHHHHHHHHHH
Q 004584 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI---------------VNGPEVLSK---FV--GETEKNIRDLFADAE 311 (744)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~---------------v~~~~l~~~---~~--g~~~~~i~~~f~~a~ 311 (744)
+.+..+||+||+|+|||++|+++|+.+.+..... -+-+++..- .. .-.-..+|++.+.+.
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~ 99 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVV 99 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHh
Confidence 3456899999999999999999999996532110 011121110 00 113456777766655
Q ss_pred hcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccc
Q 004584 312 NDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLE 391 (744)
Q Consensus 312 ~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~ 391 (744)
... .. +...|++||++|.+. ....+.||+.++. +..++++|.+|+.++.+.|.+++ |+.
T Consensus 100 ~~~-~~---~~~kv~iI~~a~~m~-------------~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc~ 158 (328)
T PRK05707 100 QTA-QL---GGRKVVLIEPAEAMN-------------RNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RCQ 158 (328)
T ss_pred hcc-cc---CCCeEEEECChhhCC-------------HHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hce
Confidence 432 22 234599999999874 3567888988884 45688999999999999999999 776
Q ss_pred eEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCCh
Q 004584 392 VQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSG 439 (744)
Q Consensus 392 ~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg 439 (744)
.+.|++|+.++..+.|+..... ..+.+...++..+.|-.+
T Consensus 159 -~~~~~~~~~~~~~~~L~~~~~~-------~~~~~~~~~l~la~Gsp~ 198 (328)
T PRK05707 159 -QQACPLPSNEESLQWLQQALPE-------SDERERIELLTLAGGSPL 198 (328)
T ss_pred -eeeCCCcCHHHHHHHHHHhccc-------CChHHHHHHHHHcCCCHH
Confidence 5899999999888888754311 123345566777776433
No 327
>PHA02244 ATPase-like protein
Probab=98.94 E-value=1.3e-08 Score=107.61 Aligned_cols=125 Identities=16% Similarity=0.212 Sum_probs=79.4
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccc---cccccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhhccC
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAE---SMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYV 610 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~---~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~ 610 (744)
..++||+||||||||++|+++|...+.+|+.++... .+.|...... .....-|-.|.+ ..++|+|||++.+.
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g-~~~dgpLl~A~~-~GgvLiLDEId~a~--- 193 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANG-KFHETPFYEAFK-KGGLFFIDEIDASI--- 193 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccc-cccchHHHHHhh-cCCEEEEeCcCcCC---
Confidence 357999999999999999999999999999886321 1233211100 011112333322 35899999999874
Q ss_pred CCCcchhHHHHHHHHHHhccCC--------CCCCcEEEEEeCCCCC-----------CCCccccccccceEEEcCCCCHH
Q 004584 611 PIGPRFSNIISQTMLVLLKRLP--------PKGKKLLVIGTTSEVS-----------FLDSVGICDAFSVTYHVPTLKTD 671 (744)
Q Consensus 611 ~~g~~~~~~~~~~Ll~~l~~~~--------~~~~~v~vi~~tn~~~-----------~l~~~~l~~rf~~~i~~p~~~~~ 671 (744)
..++..|..+++... ....++.+|+|+|.+. .+++ .+.+||. .++|..++..
T Consensus 194 -------p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~-AllDRFv-~I~~dyp~~~ 264 (383)
T PHA02244 194 -------PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDG-ATLDRFA-PIEFDYDEKI 264 (383)
T ss_pred -------HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCH-HHHhhcE-EeeCCCCcHH
Confidence 444555555554211 1124678999999742 2222 5568996 6899988744
Q ss_pred H
Q 004584 672 D 672 (744)
Q Consensus 672 ~ 672 (744)
|
T Consensus 265 E 265 (383)
T PHA02244 265 E 265 (383)
T ss_pred H
Confidence 4
No 328
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.94 E-value=7.2e-09 Score=111.54 Aligned_cols=139 Identities=25% Similarity=0.338 Sum_probs=86.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhcc--cccchHHHHHHHHHHHHhcccccCCCCCe--eEEEEc
Q 004584 254 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSK--FVGETEKNIRDLFADAENDQRTRGDQSDL--HVIIFD 329 (744)
Q Consensus 254 ~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~--~~g~~~~~i~~~f~~a~~~~~~~~~~~~p--~Il~iD 329 (744)
.+++||.||||||||++|+.+|+.++ .++..+.+...+.. ..|...-..+.. .-....-..+.--.. +|+++|
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~-~~~~~i~~t~~l~p~d~~G~~~~~~~~~--~~~~~~~~~gpl~~~~~~ill~D 119 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALG-LPFVRIQCTPDLLPSDLLGTYAYAALLL--EPGEFRFVPGPLFAAVRVILLLD 119 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhC-CCeEEEecCCCCCHHHhcCchhHhhhhc--cCCeEEEecCCcccccceEEEEe
Confidence 45799999999999999999999995 66777766544331 122211111000 000000001111111 399999
Q ss_pred CcchhcccCCCCCCCCccHHHHHHHHHHhccC----------ccCCCcEEEEEEeCC-----CCccchhhcCCCccceEE
Q 004584 330 EIDAICKSRGSTRDGTGVHDSIVNQLLTKIDG----------VESLNNVLLIGMTNR-----KDMLDEALLRPGRLEVQV 394 (744)
Q Consensus 330 Eid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~----------~~~~~~v~vI~~tn~-----~~~id~al~r~gRf~~~i 394 (744)
||+... ..+.+.||..|+. +.-...++||+|+|. ...+++++++ ||...+
T Consensus 120 EInra~-------------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~ 184 (329)
T COG0714 120 EINRAP-------------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRI 184 (329)
T ss_pred ccccCC-------------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEE
Confidence 999853 3455566666653 334467889999894 4457999999 998899
Q ss_pred EEcCCCHHH-HHHHHHH
Q 004584 395 EISLPDENG-RLQILQI 410 (744)
Q Consensus 395 ~i~~Pd~~~-r~~Il~~ 410 (744)
.++.|+.++ ...++..
T Consensus 185 ~v~yp~~~~e~~~i~~~ 201 (329)
T COG0714 185 YVDYPDSEEEERIILAR 201 (329)
T ss_pred ecCCCCchHHHHHHHHh
Confidence 999995444 4444443
No 329
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=7.8e-09 Score=118.55 Aligned_cols=175 Identities=18% Similarity=0.193 Sum_probs=117.2
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhh----------cCCCEEEEcccccccc-cchhhHhhHHHHHHHHHhcCCCeEEEE
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGID----------SDFPFVKIISAESMIG-LHESTKCAQIVKVFEDAYKSPLSIIIL 600 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~----------~~~~~i~v~~~~~~~g-~~~~~~~~~i~~if~~a~~~~~~il~i 600 (744)
....+-+|.|+||+|||+++.-+|.. .+...+.++......| .+.++.++.++.+.+...++++.||||
T Consensus 189 R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFI 268 (786)
T COG0542 189 RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFI 268 (786)
T ss_pred cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEE
Confidence 33455689999999999999888854 2455667766666666 456677789999999999888999999
Q ss_pred eccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCC---CCC-ccccccccceEEEcCCCCHHHHHHH
Q 004584 601 DDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVS---FLD-SVGICDAFSVTYHVPTLKTDDAKKV 676 (744)
Q Consensus 601 DEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~---~l~-~~~l~~rf~~~i~~p~~~~~~~~~I 676 (744)
||||.+.+.+...+. +-..-+.|.-.|-+ ..+-+||+|+..+ .+. .+.|.+||. .+.+..|+.++-..|
T Consensus 269 DEiHtiVGAG~~~G~-a~DAaNiLKPaLAR-----GeL~~IGATT~~EYRk~iEKD~AL~RRFQ-~V~V~EPs~e~ti~I 341 (786)
T COG0542 269 DEIHTIVGAGATEGG-AMDAANLLKPALAR-----GELRCIGATTLDEYRKYIEKDAALERRFQ-KVLVDEPSVEDTIAI 341 (786)
T ss_pred echhhhcCCCccccc-ccchhhhhHHHHhc-----CCeEEEEeccHHHHHHHhhhchHHHhcCc-eeeCCCCCHHHHHHH
Confidence 999999976643212 22233334433332 3678898887643 333 336667776 889999999999999
Q ss_pred HHHc--------cCCCHHHHHHHHHhCC------CCcHHHHHHHHHHHHhc
Q 004584 677 LKQL--------NVFAEEDVDSASEALN------DMPIKKLYMLIEMAAQG 713 (744)
Q Consensus 677 l~~~--------~~~~~~~~~~~~~~~~------~g~ir~l~~~l~~a~~~ 713 (744)
|+-+ ++...++....+..++ ..=.-+++++++.|+..
T Consensus 342 LrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~ 392 (786)
T COG0542 342 LRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGAR 392 (786)
T ss_pred HHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHH
Confidence 9852 3344444444443333 22223466777766554
No 330
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.92 E-value=2.9e-09 Score=102.71 Aligned_cols=113 Identities=23% Similarity=0.271 Sum_probs=73.3
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhcCC----CEEEEcccccccccchhhHhhHHHHHHHHH----hcCCCeEEEEeccc
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDSDF----PFVKIISAESMIGLHESTKCAQIVKVFEDA----YKSPLSIIILDDIE 604 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~~~----~~i~v~~~~~~~g~~~~~~~~~i~~if~~a----~~~~~~il~iDEid 604 (744)
|..++||.||+|||||.+|+++|..... +++.+++.+.--+.. ....+.+++..+ ......||||||||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~---~~~~~~~l~~~~~~~v~~~~~gVVllDEid 78 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDD---VESSVSKLLGSPPGYVGAEEGGVVLLDEID 78 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHH---CSCHCHHHHHHTTCHHHHHHHTEEEEETGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccch---HHhhhhhhhhcccceeeccchhhhhhHHHh
Confidence 5688999999999999999999998885 899998776432110 011122222211 01122499999999
Q ss_pred hhhccCCCCcch-hHHHHHHHHHHhccCC---CC-----CCcEEEEEeCCCCC
Q 004584 605 RLLEYVPIGPRF-SNIISQTMLVLLKRLP---PK-----GKKLLVIGTTSEVS 648 (744)
Q Consensus 605 ~l~~~~~~g~~~-~~~~~~~Ll~~l~~~~---~~-----~~~v~vi~~tn~~~ 648 (744)
++....+.+... ...+++.|+.+|+.-. .. -.++++|+|+|--.
T Consensus 79 Ka~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 79 KAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp GCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred hccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 998653333323 3478899999887631 11 24689999998754
No 331
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.92 E-value=1.9e-09 Score=103.62 Aligned_cols=112 Identities=23% Similarity=0.325 Sum_probs=72.6
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEccccc--------ccccchhh---HhhHHHHHHHHHhcCCCeEEE
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES--------MIGLHEST---KCAQIVKVFEDAYKSPLSIII 599 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~--------~~g~~~~~---~~~~i~~if~~a~~~~~~il~ 599 (744)
+.+|||+|++||||+.+|+++++.+ +.||+.++|... ++|...+. ....-..+|..|.. ++||
T Consensus 22 ~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~---GtL~ 98 (168)
T PF00158_consen 22 DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANG---GTLF 98 (168)
T ss_dssp TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTT---SEEE
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccc---eEEe
Confidence 3889999999999999999999876 479999999764 34432210 00011256677654 7899
Q ss_pred EeccchhhccCCCCcchhHHHHHHHHHHhccCC-----C---CCCcEEEEEeCCCCCCCCccccccccc
Q 004584 600 LDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP-----P---KGKKLLVIGTTSEVSFLDSVGICDAFS 660 (744)
Q Consensus 600 iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~-----~---~~~~v~vi~~tn~~~~l~~~~l~~rf~ 660 (744)
||||+.|. ..+|..|+..|+.-. . ...++.||++|+.. +....-.++|.
T Consensus 99 Ld~I~~L~----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~--l~~~v~~g~fr 155 (168)
T PF00158_consen 99 LDEIEDLP----------PELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD--LEELVEQGRFR 155 (168)
T ss_dssp EETGGGS-----------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS---HHHHHHTTSS-
T ss_pred ecchhhhH----------HHHHHHHHHHHhhchhccccccccccccceEEeecCcC--HHHHHHcCCCh
Confidence 99999984 667888888876421 1 12378999999875 33333335554
No 332
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.92 E-value=3.6e-09 Score=102.04 Aligned_cols=119 Identities=22% Similarity=0.295 Sum_probs=73.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhcC---CCcEEecccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEc
Q 004584 253 HVKGMLLYGPPGTGKTLMARQIGKMLNG---MEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFD 329 (744)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~la~~l~~---~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iD 329 (744)
|...+||.||+|||||.+|+++|+.+.. .++..++++++... ++.+..+..++..+....... ...|||||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~----~~gVVllD 75 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAE----EGGVVLLD 75 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHH----HHTEEEEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeecc----chhhhhhH
Confidence 4457899999999999999999999962 36778888887661 111112222222111000000 01299999
Q ss_pred CcchhcccCCCCCCCCccHHHHHHHHHHhccCc---------cCCCcEEEEEEeCCCCc
Q 004584 330 EIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV---------ESLNNVLLIGMTNRKDM 379 (744)
Q Consensus 330 Eid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~---------~~~~~v~vI~~tn~~~~ 379 (744)
|||++.++..... ......+.+.||..+|+- -...++++|+|+|--..
T Consensus 76 EidKa~~~~~~~~--~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 76 EIDKAHPSNSGGA--DVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp TGGGCSHTTTTCS--HHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred HHhhccccccccc--hhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 9999987622211 122346777888887642 12357999999998654
No 333
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.92 E-value=1.5e-08 Score=117.97 Aligned_cols=164 Identities=21% Similarity=0.286 Sum_probs=94.7
Q ss_pred cccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcC--------------
Q 004584 215 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG-------------- 280 (744)
Q Consensus 215 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~-------------- 280 (744)
.|.+ |.|.+..+..+.. +...+ ...||||+|+||||||++||++++.+..
T Consensus 2 pf~~--ivGq~~~~~al~~-~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~ 65 (633)
T TIGR02442 2 PFTA--IVGQEDLKLALLL-NAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPD 65 (633)
T ss_pred Ccch--hcChHHHHHHHHH-HhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCC
Confidence 4666 9999988776632 22211 1247999999999999999999998731
Q ss_pred --------------------CCcEEecccchhcccccchHHHHHHHHHHHHh-cccccCCCCCeeEEEEcCcchhcccCC
Q 004584 281 --------------------MEPKIVNGPEVLSKFVGETEKNIRDLFADAEN-DQRTRGDQSDLHVIIFDEIDAICKSRG 339 (744)
Q Consensus 281 --------------------~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~-~~~~~~~~~~p~Il~iDEid~l~~~~~ 339 (744)
.++..+.+.......+|.. .+...+..... ..+..-......+|||||++.+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~--d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~---- 139 (633)
T TIGR02442 66 DPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSL--DIERALREGEKAFQPGLLAEAHRGILYIDEVNLLD---- 139 (633)
T ss_pred CccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcc--cHHHHhhcCCeeecCcceeecCCCeEEeChhhhCC----
Confidence 1222222211111111211 01111110000 00000000112399999999874
Q ss_pred CCCCCCccHHHHHHHHHHhccCc-----------cCCCcEEEEEEeCCCC-ccchhhcCCCccceEEEEcCCC-HHHHHH
Q 004584 340 STRDGTGVHDSIVNQLLTKIDGV-----------ESLNNVLLIGMTNRKD-MLDEALLRPGRLEVQVEISLPD-ENGRLQ 406 (744)
Q Consensus 340 ~~~~~~~~~~~~~~~LL~~~d~~-----------~~~~~v~vI~~tn~~~-~id~al~r~gRf~~~i~i~~Pd-~~~r~~ 406 (744)
..+.+.|+..|+.- ....++.+|+++|..+ .+.++|.. ||...|.++.|. .+++.+
T Consensus 140 ---------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~ 208 (633)
T TIGR02442 140 ---------DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVE 208 (633)
T ss_pred ---------HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHH
Confidence 34555666666421 1124689999998643 57889998 999989888774 577788
Q ss_pred HHHHH
Q 004584 407 ILQIH 411 (744)
Q Consensus 407 Il~~~ 411 (744)
|++..
T Consensus 209 il~~~ 213 (633)
T TIGR02442 209 IIRRR 213 (633)
T ss_pred HHHHH
Confidence 88653
No 334
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.91 E-value=4.6e-09 Score=120.77 Aligned_cols=186 Identities=16% Similarity=0.191 Sum_probs=117.6
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhcCC--CEEEEcc---cccccccchhhHhhHHH--------HHHHHHhcCCCeEEEE
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDSDF--PFVKIIS---AESMIGLHESTKCAQIV--------KVFEDAYKSPLSIIIL 600 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~~~--~~i~v~~---~~~~~g~~~~~~~~~i~--------~if~~a~~~~~~il~i 600 (744)
..++||.|+||||||++|++++..+.. +|+.+.. ++.++|...-. ..+. .++.+ ...++|||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~--~~~~~g~~~~~~G~L~~---A~~GvL~l 90 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVE--ESLAGGQRVTQPGLLDE---APRGVLYV 90 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhh--hhhhcCcccCCCCCeee---CCCCcEec
Confidence 579999999999999999999988753 5887752 33344432100 0000 01111 23369999
Q ss_pred eccchhhccCCCCcchhHHHHHHHHHHhccCC----------CCCCcEEEEEeCCCCC---CCCccccccccceEEEcCC
Q 004584 601 DDIERLLEYVPIGPRFSNIISQTMLVLLKRLP----------PKGKKLLVIGTTSEVS---FLDSVGICDAFSVTYHVPT 667 (744)
Q Consensus 601 DEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~----------~~~~~v~vi~~tn~~~---~l~~~~l~~rf~~~i~~p~ 667 (744)
|||+.+. ..+++.|+..|+.-. .....+.||||+|..+ .+.+ .+..||...+.+..
T Consensus 91 DEi~rl~----------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~-~LldRf~l~v~~~~ 159 (589)
T TIGR02031 91 DMANLLD----------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPD-HLLDRLALHVSLED 159 (589)
T ss_pred cchhhCC----------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCH-HHHHhccCeeecCC
Confidence 9999984 677888888886421 0113678899888764 2322 56689998887765
Q ss_pred CC-HHHHHHHHHHc---------------------------cCCCHHHHHH-HHHhCC--CC-cHHHHHHHHHHHHhccc
Q 004584 668 LK-TDDAKKVLKQL---------------------------NVFAEEDVDS-ASEALN--DM-PIKKLYMLIEMAAQGEQ 715 (744)
Q Consensus 668 ~~-~~~~~~Il~~~---------------------------~~~~~~~~~~-~~~~~~--~g-~ir~l~~~l~~a~~~a~ 715 (744)
+. .+++.+|+++. ....++++.. ++.... +. +.|..+.+++.|...|
T Consensus 160 ~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~A- 238 (589)
T TIGR02031 160 VASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHA- 238 (589)
T ss_pred CCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH-
Confidence 54 55556666541 1122222222 222211 32 3677777777776664
Q ss_pred CCcccccccCCCCcchhhHHHHHHHHh
Q 004584 716 GGAAEAIYSGREKIKISHFYDCLQDMV 742 (744)
Q Consensus 716 ~~~~~a~~~g~~~It~e~~~~al~~~~ 742 (744)
...|+..|+.+|+..|+.-+.
T Consensus 239 ------al~gr~~V~~~Dv~~a~~lvl 259 (589)
T TIGR02031 239 ------ALHGRTEVTEEDLKLAVELVL 259 (589)
T ss_pred ------HHhCCCCCCHHHHHHHHHHHh
Confidence 346999999999999988664
No 335
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.91 E-value=1.2e-08 Score=115.49 Aligned_cols=169 Identities=17% Similarity=0.260 Sum_probs=111.7
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEccccc--------ccccchhhHhhHH---HHHHHHHhcCCCeEEE
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES--------MIGLHESTKCAQI---VKVFEDAYKSPLSIII 599 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~--------~~g~~~~~~~~~i---~~if~~a~~~~~~il~ 599 (744)
...+++.|++||||+++|++++..+ +.+|+.++|... ++|...+...... ...|. ....+.||
T Consensus 157 ~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~ 233 (463)
T TIGR01818 157 DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFE---QADGGTLF 233 (463)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEE---ECCCCeEE
Confidence 4578999999999999999998764 568999988754 1221110000000 01122 23357899
Q ss_pred EeccchhhccCCCCcchhHHHHHHHHHHhccCC--------CCCCcEEEEEeCCCCC--CCCcc----ccccccc-eEEE
Q 004584 600 LDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP--------PKGKKLLVIGTTSEVS--FLDSV----GICDAFS-VTYH 664 (744)
Q Consensus 600 iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--------~~~~~v~vi~~tn~~~--~l~~~----~l~~rf~-~~i~ 664 (744)
||||+.|. ..++..|+.+++.-. ....++.||++|+..- ++... .+..|+. ..|+
T Consensus 234 l~ei~~l~----------~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~ 303 (463)
T TIGR01818 234 LDEIGDMP----------LDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIH 303 (463)
T ss_pred EEchhhCC----------HHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcceec
Confidence 99999984 556777877776421 1112567888887541 11211 2223443 5899
Q ss_pred cCCCC--HHHHHHHHHHc------------cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhccc
Q 004584 665 VPTLK--TDDAKKVLKQL------------NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQ 715 (744)
Q Consensus 665 ~p~~~--~~~~~~Il~~~------------~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~ 715 (744)
+||+. .+|+..+++++ ..++++.+..+..+-++||+|+|.++++.|...+.
T Consensus 304 lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~ 368 (463)
T TIGR01818 304 LPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMAS 368 (463)
T ss_pred CCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 99999 78888888752 14566666667777779999999999999988764
No 336
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.89 E-value=4.7e-10 Score=104.94 Aligned_cols=112 Identities=25% Similarity=0.353 Sum_probs=70.3
Q ss_pred eeeeecCCCCChhHHHHHHHhhcCCCEEEEccccc-----ccccchhh--HhhHHHHHHHHHhcCCCeEEEEeccchhhc
Q 004584 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES-----MIGLHEST--KCAQIVKVFEDAYKSPLSIIILDDIERLLE 608 (744)
Q Consensus 536 ~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~-----~~g~~~~~--~~~~i~~if~~a~~~~~~il~iDEid~l~~ 608 (744)
+|||+||||||||++|+.+|...+.+++.+.+... ++|.+... ........+..+.+ .+.++||||+++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a~- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRAP- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccCC-
Confidence 58999999999999999999999999988866553 34433211 00000011111111 46899999999863
Q ss_pred cCCCCcchhHHHHHHHHHHhccCC----CC------CC------cEEEEEeCCCCC----CCCcccccccc
Q 004584 609 YVPIGPRFSNIISQTMLVLLKRLP----PK------GK------KLLVIGTTSEVS----FLDSVGICDAF 659 (744)
Q Consensus 609 ~~~~g~~~~~~~~~~Ll~~l~~~~----~~------~~------~v~vi~~tn~~~----~l~~~~l~~rf 659 (744)
..+++.|+.+++.-. .. .. .+.+|+|+|..+ .+++ .+.+||
T Consensus 79 ---------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~-al~~Rf 139 (139)
T PF07728_consen 79 ---------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSP-ALLDRF 139 (139)
T ss_dssp ---------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCH-HHHTT-
T ss_pred ---------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCH-HHHhhC
Confidence 677778888776621 10 11 389999999887 4444 455666
No 337
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.88 E-value=3.5e-08 Score=113.70 Aligned_cols=105 Identities=20% Similarity=0.273 Sum_probs=64.6
Q ss_pred cEEEEEEeCCC--CccchhhcCCCccc---eEEEEcC--C-CHHHHHHHHHHHHhcccccCCC--CCcccHHHHHH----
Q 004584 367 NVLLIGMTNRK--DMLDEALLRPGRLE---VQVEISL--P-DENGRLQILQIHTNKMKENSFL--APDVNLQELAA---- 432 (744)
Q Consensus 367 ~v~vI~~tn~~--~~id~al~r~gRf~---~~i~i~~--P-d~~~r~~Il~~~~~~~~~~~~~--~~~~~l~~la~---- 432 (744)
++.+|+++|+. ..++|.|+. ||+ ..+.|+. | +.+.|.++.+...+.+..++.+ .++..+.++.+
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 68899999875 568999998 888 6666643 4 4555656655444333322111 12222333332
Q ss_pred hcC-----CCChHHHHHHHHHHHHHHHHhccccCCCCCCCccccceeehhHHHHHHhhh
Q 004584 433 RTK-----NYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (744)
Q Consensus 433 ~t~-----g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~ 486 (744)
.+. ..+.++|.++++.|...|..+ ....|+.+|+.+|++..
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~-------------~~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSS-------------GKVYVTAEHVLKAKKLA 391 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhc-------------CCceecHHHHHHHHHHH
Confidence 111 134689999999996655432 23569999999988754
No 338
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=8e-09 Score=104.47 Aligned_cols=103 Identities=30% Similarity=0.504 Sum_probs=72.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhc-ccccchHHH-HHHHHHHHHhcccccCCCCCeeEEEEcCcc
Q 004584 255 KGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS-KFVGETEKN-IRDLFADAENDQRTRGDQSDLHVIIFDEID 332 (744)
Q Consensus 255 ~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~-~~~g~~~~~-i~~~f~~a~~~~~~~~~~~~p~Il~iDEid 332 (744)
.+|||.||+|||||+||+.+|+.+ ..||.+.++..+.. .|+|+..++ +.+++..|...-.... ..||+|||||
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~L-nVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAe----rGIIyIDEID 172 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKIL-NVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAE----RGIIYIDEID 172 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHh-CCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHh----CCeEEEechh
Confidence 479999999999999999999999 47888778887775 789987666 4555554432221111 1399999999
Q ss_pred hhcccCCCCCCCCcc-HHHHHHHHHHhccCc
Q 004584 333 AICKSRGSTRDGTGV-HDSIVNQLLTKIDGV 362 (744)
Q Consensus 333 ~l~~~~~~~~~~~~~-~~~~~~~LL~~~d~~ 362 (744)
.+..+....+-..++ ..-+...||..++|.
T Consensus 173 KIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 173 KIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred hhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 999776443221111 234667788998874
No 339
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=4.9e-08 Score=104.10 Aligned_cols=158 Identities=17% Similarity=0.171 Sum_probs=103.3
Q ss_pred CCCCceeeeeecCCCCChhHHHHHHHhhcCCCE------------------------EEEccccccc-------------
Q 004584 530 KGSPLVTCLLEGPSGSGKTALAATAGIDSDFPF------------------------VKIISAESMI------------- 572 (744)
Q Consensus 530 ~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~------------------------i~v~~~~~~~------------- 572 (744)
....+..+||+||+|+||+++|+++|....+.. +....|+...
T Consensus 17 ~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~ 96 (342)
T PRK06964 17 RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEA 96 (342)
T ss_pred cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccc
Confidence 345667889999999999999999996542211 1111111000
Q ss_pred -----cc-----chhhHhhHHHHHHHHHh----cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcE
Q 004584 573 -----GL-----HESTKCAQIVKVFEDAY----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKL 638 (744)
Q Consensus 573 -----g~-----~~~~~~~~i~~if~~a~----~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v 638 (744)
|. +..-+.+.++++.+.+. .+...|++||++|++. ....++||..|+..++ ++
T Consensus 97 ~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~----------~~AaNaLLKtLEEPp~---~t 163 (342)
T PRK06964 97 DADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN----------VAAANALLKTLEEPPP---GT 163 (342)
T ss_pred hhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC----------HHHHHHHHHHhcCCCc---Cc
Confidence 00 00123456777776653 3456799999999984 6677888888887543 56
Q ss_pred EEEEeCCCCCCCCccccccccceEEEcCCCCHHHHHHHHHHccCCCHHHHHHHHHhCCCCcHHHHHHH
Q 004584 639 LVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQLNVFAEEDVDSASEALNDMPIKKLYML 706 (744)
Q Consensus 639 ~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~~~~~~~~~~~~~~~~~~g~ir~l~~~ 706 (744)
++|.+|++++.+.+ -+++|. ..++|++++.+++.+.|...+ ..+.+. +...++|+...++.+
T Consensus 164 ~fiL~t~~~~~LLp-TI~SRc-q~i~~~~~~~~~~~~~L~~~~-~~~~~~---~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 164 VFLLVSARIDRLLP-TILSRC-RQFPMTVPAPEAAAAWLAAQG-VADADA---LLAEAGGAPLAALAL 225 (342)
T ss_pred EEEEEECChhhCcH-HHHhcC-EEEEecCCCHHHHHHHHHHcC-CChHHH---HHHHcCCCHHHHHHH
Confidence 77778888887777 455655 699999999999999998764 333221 233456666555444
No 340
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=3.7e-08 Score=105.70 Aligned_cols=155 Identities=23% Similarity=0.230 Sum_probs=103.0
Q ss_pred cCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE---------------
Q 004584 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI--------------- 285 (744)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~--------------- 285 (744)
+||.+..++.+ ..++..- +.+..+||+||+|+|||++|+++|+.+.+.....
T Consensus 8 ~~~q~~~~~~L-~~~~~~~------------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~ 74 (329)
T PRK08058 8 TALQPVVVKML-QNSIAKN------------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDS 74 (329)
T ss_pred HhhHHHHHHHH-HHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhc
Confidence 45588777777 6655432 2344689999999999999999999985432100
Q ss_pred ecccchhc-ccccc--hHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCc
Q 004584 286 VNGPEVLS-KFVGE--TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV 362 (744)
Q Consensus 286 v~~~~l~~-~~~g~--~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~ 362 (744)
-+-+++.- ...|. .-..++++.+.+... +.. +...|++|||+|.+. ....+.||+.++.
T Consensus 75 ~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~-~~~---~~~kvviI~~a~~~~-------------~~a~NaLLK~LEE- 136 (329)
T PRK08058 75 GNHPDVHLVAPDGQSIKKDQIRYLKEEFSKS-GVE---SNKKVYIIEHADKMT-------------ASAANSLLKFLEE- 136 (329)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHhhC-Ccc---cCceEEEeehHhhhC-------------HHHHHHHHHHhcC-
Confidence 00111110 00111 234566666554432 221 224599999999873 3466789999884
Q ss_pred cCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHH
Q 004584 363 ESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQI 410 (744)
Q Consensus 363 ~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~ 410 (744)
+..++++|.+|+.++.+.|.+++ |.. .++|+.|+.++..++|+.
T Consensus 137 -Pp~~~~~Il~t~~~~~ll~TIrS--Rc~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 -PSGGTTAILLTENKHQILPTILS--RCQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred -CCCCceEEEEeCChHhCcHHHHh--hce-eeeCCCCCHHHHHHHHHH
Confidence 55678888899899999999999 654 789999999988777753
No 341
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.86 E-value=9.8e-08 Score=93.26 Aligned_cols=156 Identities=16% Similarity=0.203 Sum_probs=106.3
Q ss_pred ccccceeecCcchhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEcccccccccch
Q 004584 500 SRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIGLHE 576 (744)
Q Consensus 500 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~~~g~~~ 576 (744)
..+..+.++..+.+.+.+...+++ .+.|..+|||+|..|||||+++|++.++. +..+|.|...+.
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~------~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl------ 124 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFA------EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL------ 124 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHH------cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH------
Confidence 344455666555555555544444 34678999999999999999999998765 566777744432
Q ss_pred hhHhhHHHHHHHHHhcC-CCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccC-CCCCCcEEEEEeCCCCCCCCcc-
Q 004584 577 STKCAQIVKVFEDAYKS-PLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRL-PPKGKKLLVIGTTSEVSFLDSV- 653 (744)
Q Consensus 577 ~~~~~~i~~if~~a~~~-~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~-~~~~~~v~vi~~tn~~~~l~~~- 653 (744)
..+..+++..+.. ..-|||.|+.--= . .+.....|...|++- .....+|+|.+|+|+..+|...
T Consensus 125 ----~~Lp~l~~~Lr~~~~kFIlFcDDLSFe-----~----gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~ 191 (287)
T COG2607 125 ----ATLPDLVELLRARPEKFILFCDDLSFE-----E----GDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDM 191 (287)
T ss_pred ----hhHHHHHHHHhcCCceEEEEecCCCCC-----C----CchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhh
Confidence 2455666665543 3468899987431 1 133445566666653 3334589999999997765411
Q ss_pred --------------------ccccccceEEEcCCCCHHHHHHHHHHc
Q 004584 654 --------------------GICDAFSVTYHVPTLKTDDAKKVLKQL 680 (744)
Q Consensus 654 --------------------~l~~rf~~~i~~p~~~~~~~~~Il~~~ 680 (744)
.+..||...+.|++++.++..+|++++
T Consensus 192 ~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~ 238 (287)
T COG2607 192 KDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHY 238 (287)
T ss_pred hhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHH
Confidence 245899999999999999999999974
No 342
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=4.6e-08 Score=104.99 Aligned_cols=151 Identities=17% Similarity=0.156 Sum_probs=95.8
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhcCCC------------------------EEEEcccccccccchhhHhhHHHHHH
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFP------------------------FVKIISAESMIGLHESTKCAQIVKVF 587 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~~~~------------------------~i~v~~~~~~~g~~~~~~~~~i~~if 587 (744)
..+..+||+||+|+|||++|+++|...-.. +..+ .++ | ..-+.+.++++.
T Consensus 26 ~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i-~~~---~--~~i~id~ir~l~ 99 (329)
T PRK08058 26 RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLV-APD---G--QSIKKDQIRYLK 99 (329)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEe-ccc---c--ccCCHHHHHHHH
Confidence 344556999999999999999998764211 1111 111 1 112334677766
Q ss_pred HHHh----cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEE
Q 004584 588 EDAY----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTY 663 (744)
Q Consensus 588 ~~a~----~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i 663 (744)
+.+. .+...|++|||+|.+. ....++|+..|+..++ .+++|.+|+.+..+-+ .+++| +..+
T Consensus 100 ~~~~~~~~~~~~kvviI~~a~~~~----------~~a~NaLLK~LEEPp~---~~~~Il~t~~~~~ll~-TIrSR-c~~i 164 (329)
T PRK08058 100 EEFSKSGVESNKKVYIIEHADKMT----------ASAANSLLKFLEEPSG---GTTAILLTENKHQILP-TILSR-CQVV 164 (329)
T ss_pred HHHhhCCcccCceEEEeehHhhhC----------HHHHHHHHHHhcCCCC---CceEEEEeCChHhCcH-HHHhh-ceee
Confidence 6553 3456799999999974 6678889999888543 3444446655555555 34455 4589
Q ss_pred EcCCCCHHHHHHHHHHccCCCHHHHHHHHHhCCCCcHHHHHHH
Q 004584 664 HVPTLKTDDAKKVLKQLNVFAEEDVDSASEALNDMPIKKLYML 706 (744)
Q Consensus 664 ~~p~~~~~~~~~Il~~~~~~~~~~~~~~~~~~~~g~ir~l~~~ 706 (744)
+|++++.+++...|+..+ ...++ ..++.... |++.+++.+
T Consensus 165 ~~~~~~~~~~~~~L~~~g-i~~~~-~~~l~~~~-g~~~~A~~l 204 (329)
T PRK08058 165 EFRPLPPESLIQRLQEEG-ISESL-ATLLAGLT-NSVEEALAL 204 (329)
T ss_pred eCCCCCHHHHHHHHHHcC-CChHH-HHHHHHHc-CCHHHHHHH
Confidence 999999999999998764 33333 33333333 455555444
No 343
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=5.2e-08 Score=104.22 Aligned_cols=160 Identities=14% Similarity=0.019 Sum_probs=105.3
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhcCCC-------E---------EEEcccccccccch----hhHhhHHHHHHHHH-
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFP-------F---------VKIISAESMIGLHE----STKCAQIVKVFEDA- 590 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~~~~-------~---------i~v~~~~~~~g~~~----~~~~~~i~~if~~a- 590 (744)
..+..+||+||+|+||+++|.++|...-+. + ..-+-|+...=..+ .-+.+.++++-+.+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 445677899999999999999998653210 0 00011111100001 12345677766655
Q ss_pred ---hcCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCC
Q 004584 591 ---YKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPT 667 (744)
Q Consensus 591 ---~~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~ 667 (744)
..+...|++||++|+|. ....++||..|+..++ +.++|-+|+.++.+-+ -+++|.. .+.|++
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~----------~~AaNaLLKtLEEPp~---~t~fiL~t~~~~~lLp-TIrSRCq-~~~~~~ 166 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLT----------DAAANALLKTLEEPPE---NTWFFLACREPARLLA-TLRSRCR-LHYLAP 166 (334)
T ss_pred hccccCCceEEEEcchHhhC----------HHHHHHHHHHhcCCCC---CeEEEEEECChhhChH-HHHhccc-cccCCC
Confidence 34567899999999984 6678889988888543 5566667777776665 4555654 789999
Q ss_pred CCHHHHHHHHHHccCCCHHHHHHHHHhCCCCcHHHHHHHH
Q 004584 668 LKTDDAKKVLKQLNVFAEEDVDSASEALNDMPIKKLYMLI 707 (744)
Q Consensus 668 ~~~~~~~~Il~~~~~~~~~~~~~~~~~~~~g~ir~l~~~l 707 (744)
++.++..+.|.+.....+++ ...+..+++|+...++.++
T Consensus 167 ~~~~~~~~~L~~~~~~~~~~-a~~~~~la~G~~~~Al~l~ 205 (334)
T PRK07993 167 PPEQYALTWLSREVTMSQDA-LLAALRLSAGAPGAALALL 205 (334)
T ss_pred CCHHHHHHHHHHccCCCHHH-HHHHHHHcCCCHHHHHHHh
Confidence 99999998887654455555 4455667788777766654
No 344
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.85 E-value=1.7e-08 Score=110.45 Aligned_cols=156 Identities=20% Similarity=0.238 Sum_probs=87.0
Q ss_pred CcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCC-CcEEecccc-hhccccc
Q 004584 220 GIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGM-EPKIVNGPE-VLSKFVG 297 (744)
Q Consensus 220 ~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~-~~~~v~~~~-l~~~~~g 297 (744)
+|.|.++.++.++.- . ....++||+||||||||++|++++..+... ++....+.. .....+|
T Consensus 21 ~i~gre~vI~lll~a-a---------------lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG 84 (498)
T PRK13531 21 GLYERSHAIRLCLLA-A---------------LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 84 (498)
T ss_pred hccCcHHHHHHHHHH-H---------------ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcC
Confidence 377777777766322 1 234579999999999999999999987432 233222210 0111122
Q ss_pred ch-HHHH--HHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccC-c-------cCCC
Q 004584 298 ET-EKNI--RDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDG-V-------ESLN 366 (744)
Q Consensus 298 ~~-~~~i--~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~-~-------~~~~ 366 (744)
.. -... ..-|.... .|.-....+||+|||..+. ....+.||..|.. . ....
T Consensus 85 ~l~i~~~~~~g~f~r~~-----~G~L~~A~lLfLDEI~ras-------------p~~QsaLLeam~Er~~t~g~~~~~lp 146 (498)
T PRK13531 85 PLSIQALKDEGRYQRLT-----SGYLPEAEIVFLDEIWKAG-------------PAILNTLLTAINERRFRNGAHEEKIP 146 (498)
T ss_pred cHHHhhhhhcCchhhhc-----CCccccccEEeecccccCC-------------HHHHHHHHHHHHhCeEecCCeEEeCC
Confidence 11 0000 01111111 1111012399999998653 3466677777732 1 1112
Q ss_pred cEEEEEEeCCCCc---cchhhcCCCccceEEEEcCCC-HHHHHHHHHHH
Q 004584 367 NVLLIGMTNRKDM---LDEALLRPGRLEVQVEISLPD-ENGRLQILQIH 411 (744)
Q Consensus 367 ~v~vI~~tn~~~~---id~al~r~gRf~~~i~i~~Pd-~~~r~~Il~~~ 411 (744)
..++++|||.... ..+++.. ||...+.+|+|+ .++-.+|+...
T Consensus 147 ~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 147 MRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcc
Confidence 2455556664321 2348877 998889999997 45567888754
No 345
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.84 E-value=1.7e-08 Score=114.22 Aligned_cols=168 Identities=18% Similarity=0.242 Sum_probs=108.2
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEccccc--------ccccchhhHh---hHHHHHHHHHhcCCCeEEE
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES--------MIGLHESTKC---AQIVKVFEDAYKSPLSIII 599 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~--------~~g~~~~~~~---~~i~~if~~a~~~~~~il~ 599 (744)
..+++++|++||||+++|++++..+ +.+|+.++|... ++|...+... ..-...|..| ..++||
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ 242 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERA---NEGTLL 242 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEE
Confidence 3679999999999999999998764 578999988764 1221100000 0001122222 347899
Q ss_pred EeccchhhccCCCCcchhHHHHHHHHHHhccCC-----C---CCCcEEEEEeCCCCC-------CCCcccccccc-ceEE
Q 004584 600 LDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP-----P---KGKKLLVIGTTSEVS-------FLDSVGICDAF-SVTY 663 (744)
Q Consensus 600 iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~-----~---~~~~v~vi~~tn~~~-------~l~~~~l~~rf-~~~i 663 (744)
||||+.|. ..++..|+..++.-. . ...++.+|++|+..- .+.+ .+..|+ ...|
T Consensus 243 ld~i~~l~----------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~-~l~~~l~~~~i 311 (457)
T PRK11361 243 LDEIGEMP----------LVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFRE-DLFYRLNVIHL 311 (457)
T ss_pred EechhhCC----------HHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchH-HHHHHhcccee
Confidence 99999984 556777777776421 0 112578898887641 1111 122222 4668
Q ss_pred EcCCCC--HHHHHHHHHHc------------cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhccc
Q 004584 664 HVPTLK--TDDAKKVLKQL------------NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQ 715 (744)
Q Consensus 664 ~~p~~~--~~~~~~Il~~~------------~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~ 715 (744)
.+||+. .+|+..+++++ ..++++.+..+..+-++||+|++.++++.|...+.
T Consensus 312 ~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~~ 377 (457)
T PRK11361 312 ILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNS 377 (457)
T ss_pred cCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCC
Confidence 899988 67777766542 13566556666666679999999999999987654
No 346
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.83 E-value=4.8e-08 Score=105.17 Aligned_cols=153 Identities=16% Similarity=0.139 Sum_probs=99.2
Q ss_pred eeeeecCCCCChhHHHHHHHhhcC------------------------CCEEEEcccccccccchhhHhhHHHHHHHHHh
Q 004584 536 TCLLEGPSGSGKTALAATAGIDSD------------------------FPFVKIISAESMIGLHESTKCAQIVKVFEDAY 591 (744)
Q Consensus 536 ~~Ll~GppG~GKT~la~~~a~~~~------------------------~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~ 591 (744)
.+||+||||+|||++|.++|+... .+++.++.... .+.. -....++++-+...
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~-~~~~--i~~~~vr~~~~~~~ 102 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDL-RKID--IIVEQVRELAEFLS 102 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccccc-CCCc--chHHHHHHHHHHhc
Confidence 499999999999999999998765 34555533322 1111 12334555555443
Q ss_pred c----CCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCC
Q 004584 592 K----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPT 667 (744)
Q Consensus 592 ~----~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~ 667 (744)
. ++..|++|||+|.|. ....++++..++..+ .+..+|.+||.+..+-+ .+++| +..++|++
T Consensus 103 ~~~~~~~~kviiidead~mt----------~~A~nallk~lEep~---~~~~~il~~n~~~~il~-tI~SR-c~~i~f~~ 167 (325)
T COG0470 103 ESPLEGGYKVVIIDEADKLT----------EDAANALLKTLEEPP---KNTRFILITNDPSKILP-TIRSR-CQRIRFKP 167 (325)
T ss_pred cCCCCCCceEEEeCcHHHHh----------HHHHHHHHHHhccCC---CCeEEEEEcCChhhccc-hhhhc-ceeeecCC
Confidence 2 457899999999985 456777877776543 35677778887776655 44444 56889988
Q ss_pred CCHHHHHHHHHHccCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhc
Q 004584 668 LKTDDAKKVLKQLNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQG 713 (744)
Q Consensus 668 ~~~~~~~~Il~~~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~ 713 (744)
++... .|.... ++....+...+.|++|..++.++..+..
T Consensus 168 ~~~~~--~i~~~e-----~~~l~~i~~~~~gd~r~~i~~lq~~~~~ 206 (325)
T COG0470 168 PSRLE--AIAWLE-----DQGLEEIAAVAEGDARKAINPLQALAAL 206 (325)
T ss_pred chHHH--HHHHhh-----ccchhHHHHHHHHHHHcCCCHHHHHHHh
Confidence 55333 333332 3444445556678888888888777665
No 347
>PRK04132 replication factor C small subunit; Provisional
Probab=98.83 E-value=5e-08 Score=114.36 Aligned_cols=163 Identities=15% Similarity=0.137 Sum_probs=117.9
Q ss_pred EEEc--CCCChHHHHHHHHHHHhc----CCCcEEecccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCc
Q 004584 258 LLYG--PPGTGKTLMARQIGKMLN----GMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEI 331 (744)
Q Consensus 258 LL~G--ppGtGKT~lar~la~~l~----~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEi 331 (744)
+..| |++.||||+|+++|+++- +..+..+|+++..+ -..++++.+.+....+..+ ....|+||||+
T Consensus 568 ~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~--~~~KVvIIDEa 639 (846)
T PRK04132 568 FIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGG--ASFKIIFLDEA 639 (846)
T ss_pred hhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCC--CCCEEEEEECc
Confidence 4558 999999999999999982 34578888886422 3467777766654443321 12469999999
Q ss_pred chhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHH
Q 004584 332 DAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIH 411 (744)
Q Consensus 332 d~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~ 411 (744)
|.|. ....+.|+..|+. +..++.+|++||.++.+.+++++ |+. .+.|++|+.++....|+..
T Consensus 640 D~Lt-------------~~AQnALLk~lEe--p~~~~~FILi~N~~~kIi~tIrS--RC~-~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 640 DALT-------------QDAQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred ccCC-------------HHHHHHHHHHhhC--CCCCeEEEEEeCChhhCchHHhh--hce-EEeCCCCCHHHHHHHHHHH
Confidence 9984 2345678888884 34678999999999999999998 764 7899999999888888876
Q ss_pred HhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHH
Q 004584 412 TNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAV 450 (744)
Q Consensus 412 ~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~ 450 (744)
+.+.. ...++..+..++..++| +.+...++++.++
T Consensus 702 ~~~Eg---i~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~ 736 (846)
T PRK04132 702 AENEG---LELTEEGLQAILYIAEG-DMRRAINILQAAA 736 (846)
T ss_pred HHhcC---CCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 65422 11245578889988887 5555555666544
No 348
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.83 E-value=1.4e-08 Score=114.24 Aligned_cols=168 Identities=19% Similarity=0.197 Sum_probs=108.4
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEcccccc--------cccchhhHh---hHHHHHHHHHhcCCCeEE
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESM--------IGLHESTKC---AQIVKVFEDAYKSPLSII 598 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~~--------~g~~~~~~~---~~i~~if~~a~~~~~~il 598 (744)
....++++|++|+||+++|++++..+ +.+|+.++|...- +|...+... ......|. ....++|
T Consensus 161 ~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl 237 (441)
T PRK10365 161 SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFV---EADGGTL 237 (441)
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCcee---ECCCCEE
Confidence 34679999999999999999998665 4789999988641 111100000 00001122 2345789
Q ss_pred EEeccchhhccCCCCcchhHHHHHHHHHHhccCCC--------CCCcEEEEEeCCCCCCCCcccccccc---------ce
Q 004584 599 ILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPP--------KGKKLLVIGTTSEVSFLDSVGICDAF---------SV 661 (744)
Q Consensus 599 ~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~--------~~~~v~vi~~tn~~~~l~~~~l~~rf---------~~ 661 (744)
|||||+.|. ...+..|+..++.-.. ...++.+|++|+..- ......++| ..
T Consensus 238 ~ldei~~l~----------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~--~~~~~~~~~~~~l~~~l~~~ 305 (441)
T PRK10365 238 FLDEIGDIS----------PMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL--AAEVNAGRFRQDLYYRLNVV 305 (441)
T ss_pred EEeccccCC----------HHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCH--HHHHHcCCchHHHHHHhccc
Confidence 999999985 4567777777765310 012467888887642 111112333 36
Q ss_pred EEEcCCCC--HHHHHHHHHHc--------c----CCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhccc
Q 004584 662 TYHVPTLK--TDDAKKVLKQL--------N----VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQ 715 (744)
Q Consensus 662 ~i~~p~~~--~~~~~~Il~~~--------~----~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~ 715 (744)
.+.+||+. .+|+..+++++ + .++++.+..++.+-++||+|+|.++++.|...+.
T Consensus 306 ~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~~ 373 (441)
T PRK10365 306 AIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLT 373 (441)
T ss_pred eecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC
Confidence 78899998 56777776652 1 3566666666666679999999999999887654
No 349
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.82 E-value=8.4e-09 Score=111.03 Aligned_cols=137 Identities=23% Similarity=0.298 Sum_probs=89.1
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccc-----cccchhhHhhHHHHHHHHHh-cCCC---eEEEEeccc
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM-----IGLHESTKCAQIVKVFEDAY-KSPL---SIIILDDIE 604 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~-----~g~~~~~~~~~i~~if~~a~-~~~~---~il~iDEid 604 (744)
..++||.||||||||++|+.+|...+.+|+.+.+...+ +|.+.......-...|.... .-.. +++++|||+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEIn 122 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEIN 122 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccc
Confidence 47899999999999999999999999999999776553 45433211000001011000 0011 499999999
Q ss_pred hhhccCCCCcchhHHHHHHHHHHhccC----CCCC-----CcEEEEEeCCCCCCCC----ccccccccceEEEcCCC-CH
Q 004584 605 RLLEYVPIGPRFSNIISQTMLVLLKRL----PPKG-----KKLLVIGTTSEVSFLD----SVGICDAFSVTYHVPTL-KT 670 (744)
Q Consensus 605 ~l~~~~~~g~~~~~~~~~~Ll~~l~~~----~~~~-----~~v~vi~~tn~~~~l~----~~~l~~rf~~~i~~p~~-~~ 670 (744)
+.. ..++++|+..|+.. +... ..++||+|+|..+.-. +..+.+||...++++.| +.
T Consensus 123 ra~----------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~ 192 (329)
T COG0714 123 RAP----------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSE 192 (329)
T ss_pred cCC----------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCch
Confidence 963 56677777777662 2222 4678888889544222 22566999889999988 45
Q ss_pred HHHHHHHHHc
Q 004584 671 DDAKKVLKQL 680 (744)
Q Consensus 671 ~~~~~Il~~~ 680 (744)
++...++.+.
T Consensus 193 ~e~~~i~~~~ 202 (329)
T COG0714 193 EEERIILARV 202 (329)
T ss_pred HHHHHHHHhC
Confidence 5555555553
No 350
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.82 E-value=9.6e-09 Score=113.75 Aligned_cols=167 Identities=22% Similarity=0.254 Sum_probs=114.5
Q ss_pred eeeeeecCCCCChhHHHHHHHhhc--CCCEEEEccccc--------ccccchhhHhhH----HHHHHHHHhcCCCeEEEE
Q 004584 535 VTCLLEGPSGSGKTALAATAGIDS--DFPFVKIISAES--------MIGLHESTKCAQ----IVKVFEDAYKSPLSIIIL 600 (744)
Q Consensus 535 ~~~Ll~GppG~GKT~la~~~a~~~--~~~~i~v~~~~~--------~~g~~~~~~~~~----i~~if~~a~~~~~~il~i 600 (744)
.++|+.|.||+||-.+|+++...+ ..||+.++|... ++||-.+..... -+..+..| .-+.+|+
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A---~gGtlFl 413 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQA---DGGTLFL 413 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceec---CCCccHH
Confidence 569999999999999999999765 468999998754 455544432211 11222333 3367999
Q ss_pred eccchhhccCCCCcchhHHHHHHHHHHhccCC-------CCCCcEEEEEeCCCCCCCCccccccccc---------eEEE
Q 004584 601 DDIERLLEYVPIGPRFSNIISQTMLVLLKRLP-------PKGKKLLVIGTTSEVSFLDSVGICDAFS---------VTYH 664 (744)
Q Consensus 601 DEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~-------~~~~~v~vi~~tn~~~~l~~~~l~~rf~---------~~i~ 664 (744)
|||..|. -.+|..||..|..-. ....+|-||+||++. |....-.++|. ..|.
T Consensus 414 deIgd~p----------~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~d--l~~lv~~g~fredLyyrL~~~~i~ 481 (606)
T COG3284 414 DEIGDMP----------LALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRD--LAQLVEQGRFREDLYYRLNAFVIT 481 (606)
T ss_pred HHhhhch----------HHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcC--HHHHHHcCCchHHHHHHhcCeeec
Confidence 9998874 567777877776521 122368899999875 33222225553 6788
Q ss_pred cCCCC-----HHHHHHHHHHcc----CCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccC
Q 004584 665 VPTLK-----TDDAKKVLKQLN----VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQG 716 (744)
Q Consensus 665 ~p~~~-----~~~~~~Il~~~~----~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~ 716 (744)
+||+. ...+..++.+.. ..+++-+..++++.++||+|++.++++.++..++.
T Consensus 482 lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~~ 542 (606)
T COG3284 482 LPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALSDG 542 (606)
T ss_pred cCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCC
Confidence 99988 233444444432 34556667778888899999999999999998765
No 351
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.82 E-value=4.3e-08 Score=111.38 Aligned_cols=136 Identities=16% Similarity=0.149 Sum_probs=80.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhcCCCcEE---ecccchhcccccchHHHHHHHHHHHHh--cccccCCCCCeeEEEE
Q 004584 254 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI---VNGPEVLSKFVGETEKNIRDLFADAEN--DQRTRGDQSDLHVIIF 328 (744)
Q Consensus 254 ~~giLL~GppGtGKT~lar~la~~l~~~~~~~---v~~~~l~~~~~g~~~~~i~~~f~~a~~--~~~~~~~~~~p~Il~i 328 (744)
..+|||+|+||||||++||++++......+.. .++..+.... +++-+..... ..+.. .....+++|
T Consensus 236 ~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~-------~~~~~~g~~~~~~G~l~--~A~~Gil~i 306 (509)
T smart00350 236 DINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAV-------TRDPETREFTLEGGALV--LADNGVCCI 306 (509)
T ss_pred cceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccc-------eEccCcceEEecCccEE--ecCCCEEEE
Confidence 34799999999999999999999874332111 0111121100 0000000000 00000 001239999
Q ss_pred cCcchhcccCCCCCCCCccHHHHHHHHHHhccCcc-----------CCCcEEEEEEeCCCC-------------ccchhh
Q 004584 329 DEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE-----------SLNNVLLIGMTNRKD-------------MLDEAL 384 (744)
Q Consensus 329 DEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~-----------~~~~v~vI~~tn~~~-------------~id~al 384 (744)
||+|.+-+ .....|++.|+.-. -..++.|||++|+.+ .+++++
T Consensus 307 DEi~~l~~-------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~l 373 (509)
T smart00350 307 DEFDKMDD-------------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPI 373 (509)
T ss_pred echhhCCH-------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHH
Confidence 99998742 23344455553211 124689999999863 489999
Q ss_pred cCCCccceEE-EEcCCCHHHHHHHHHHHHh
Q 004584 385 LRPGRLEVQV-EISLPDENGRLQILQIHTN 413 (744)
Q Consensus 385 ~r~gRf~~~i-~i~~Pd~~~r~~Il~~~~~ 413 (744)
++ |||..+ ..+.|+.+...+|++..++
T Consensus 374 Ls--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 374 LS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred hC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 99 998764 5578999999898887543
No 352
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.81 E-value=2.5e-07 Score=103.06 Aligned_cols=209 Identities=17% Similarity=0.228 Sum_probs=128.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhc---------CCCcEEecccchhc----------ccccchHHHHHHHHHHHHhcccc
Q 004584 256 GMLLYGPPGTGKTLMARQIGKMLN---------GMEPKIVNGPEVLS----------KFVGETEKNIRDLFADAENDQRT 316 (744)
Q Consensus 256 giLL~GppGtGKT~lar~la~~l~---------~~~~~~v~~~~l~~----------~~~g~~~~~i~~~f~~a~~~~~~ 316 (744)
.+.+.|-||||||..++.+.+.|. ...++.+|+-.+.+ .+.|+....... .+........
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~a-l~~L~~~f~~ 502 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAA-LEALNFRFTV 502 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHH-HHHHHHhhcc
Confidence 577889999999999999998773 12345577765544 223332211111 1111111111
Q ss_pred cCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcC--CCccc-eE
Q 004584 317 RGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLR--PGRLE-VQ 393 (744)
Q Consensus 317 ~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r--~gRf~-~~ 393 (744)
.+....++||+|||+|.|+.+. +.++..+.++.- ....+++||+..|..+....-|-. ..|++ ..
T Consensus 503 ~k~~~~~~VvLiDElD~Lvtr~----------QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tR 570 (767)
T KOG1514|consen 503 PKPKRSTTVVLIDELDILVTRS----------QDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTR 570 (767)
T ss_pred CCCCCCCEEEEeccHHHHhccc----------HHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhhhcccee
Confidence 2233458999999999998443 345555544422 344578899988887653222210 11433 25
Q ss_pred EEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCCh--HHHHHHHHHHHHHHHHhccccCCCCCCCcccc
Q 004584 394 VEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSG--AELEGVAKSAVSFALNRQLSMDDLTKPVDEES 471 (744)
Q Consensus 394 i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg--~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~ 471 (744)
|.|.+++.++..+|+...++... ......++-+|+.....+| +....+|++|...|-.+.... .....
T Consensus 571 i~F~pYth~qLq~Ii~~RL~~~~----~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~------k~~~~ 640 (767)
T KOG1514|consen 571 ICFQPYTHEQLQEIISARLKGLD----AFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKG------KLAVS 640 (767)
T ss_pred eecCCCCHHHHHHHHHHhhcchh----hcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccc------ccccc
Confidence 89999999999999999887763 1223334455555554555 334568999998887765411 22344
Q ss_pred ceeehhHHHHHHhhhc
Q 004584 472 IKVTMDDFLHALYEIV 487 (744)
Q Consensus 472 ~~it~~df~~al~~~~ 487 (744)
..+++.|+.+|+.++.
T Consensus 641 q~v~~~~v~~Ai~em~ 656 (767)
T KOG1514|consen 641 QLVGILHVMEAINEML 656 (767)
T ss_pred ceeehHHHHHHHHHHh
Confidence 5789999999998864
No 353
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.81 E-value=7.9e-08 Score=103.44 Aligned_cols=129 Identities=24% Similarity=0.342 Sum_probs=85.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhcCC-----------------------CcEEecccchhcccccchHHHHHHHHHHHHh
Q 004584 256 GMLLYGPPGTGKTLMARQIGKMLNGM-----------------------EPKIVNGPEVLSKFVGETEKNIRDLFADAEN 312 (744)
Q Consensus 256 giLL~GppGtGKT~lar~la~~l~~~-----------------------~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~ 312 (744)
.+||+||||+|||++|.++|+.+.+. .++.++.++.... .-....++++-+....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~--~i~~~~vr~~~~~~~~ 103 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKI--DIIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCC--cchHHHHHHHHHHhcc
Confidence 69999999999999999999999632 2333444332211 0123334444333322
Q ss_pred cccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccce
Q 004584 313 DQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEV 392 (744)
Q Consensus 313 ~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~ 392 (744)
. +..+...|++|||+|.+.. ...+.++..++ .+..+..+|.+||.++.+-+.+++ |+.
T Consensus 104 ~----~~~~~~kviiidead~mt~-------------~A~nallk~lE--ep~~~~~~il~~n~~~~il~tI~S--Rc~- 161 (325)
T COG0470 104 S----PLEGGYKVVIIDEADKLTE-------------DAANALLKTLE--EPPKNTRFILITNDPSKILPTIRS--RCQ- 161 (325)
T ss_pred C----CCCCCceEEEeCcHHHHhH-------------HHHHHHHHHhc--cCCCCeEEEEEcCChhhccchhhh--cce-
Confidence 2 2223456999999999853 45567777777 455688999999999999999998 654
Q ss_pred EEEEcCCCHHHHHHHH
Q 004584 393 QVEISLPDENGRLQIL 408 (744)
Q Consensus 393 ~i~i~~Pd~~~r~~Il 408 (744)
.+.|++|+........
T Consensus 162 ~i~f~~~~~~~~i~~~ 177 (325)
T COG0470 162 RIRFKPPSRLEAIAWL 177 (325)
T ss_pred eeecCCchHHHHHHHh
Confidence 6778776555444333
No 354
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.81 E-value=4e-08 Score=104.74 Aligned_cols=138 Identities=21% Similarity=0.273 Sum_probs=97.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE--Eecc--------------cchhccc--------------------
Q 004584 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK--IVNG--------------PEVLSKF-------------------- 295 (744)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~la~~l~~~~~~--~v~~--------------~~l~~~~-------------------- 295 (744)
+.+..+||+||+|+||+++|+++|+.+.+.... ...| +++.--.
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 556789999999999999999999999654311 0001 1111000
Q ss_pred --cc---------chHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccC
Q 004584 296 --VG---------ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVES 364 (744)
Q Consensus 296 --~g---------~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~ 364 (744)
.| -.-..+|++.+.+... +..+ ...|++||++|.+. ....|.||+.++ ++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~-~~~~---~~kV~iI~~ae~m~-------------~~AaNaLLKtLE--EP 159 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVG-THRG---GARVVVLYPAEALN-------------VAAANALLKTLE--EP 159 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccC-CccC---CceEEEEechhhcC-------------HHHHHHHHHHhc--CC
Confidence 00 1224566666554432 2222 34599999999874 456788999998 56
Q ss_pred CCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHH
Q 004584 365 LNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIH 411 (744)
Q Consensus 365 ~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~ 411 (744)
..++++|.+|++++.+.|.+++ |+ ..+.|++|+.++..+.|...
T Consensus 160 p~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 160 PPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 7789999999999999999999 87 47999999999998888653
No 355
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.81 E-value=3.6e-09 Score=103.27 Aligned_cols=47 Identities=38% Similarity=0.588 Sum_probs=34.0
Q ss_pred cccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhc
Q 004584 215 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN 279 (744)
Q Consensus 215 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~ 279 (744)
+|++ |.|++..++.+. -+.. | ..++||+||||||||++|+.+...+.
T Consensus 1 Df~d--I~GQe~aKrAL~-iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 1 DFSD--IVGQEEAKRALE-IAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp -TCC--SSSTHHHHHHHH-HHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred Chhh--hcCcHHHHHHHH-HHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 3667 999999988872 2221 2 25899999999999999999998874
No 356
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=8.9e-08 Score=101.21 Aligned_cols=158 Identities=13% Similarity=0.048 Sum_probs=100.0
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhcCCC-------------EEEEcccccc-cc-cc--------hhhHhhHHHHHHH
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFP-------------FVKIISAESM-IG-LH--------ESTKCAQIVKVFE 588 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~~~~-------------~i~v~~~~~~-~g-~~--------~~~~~~~i~~if~ 588 (744)
.-+..+||+||+|+||+++|.++|...-+. +..-+-|+.. +. .. ..-+.+.|+++.+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 344568999999999999999998643211 0000111211 10 00 0113567787777
Q ss_pred HHhc----CCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEE
Q 004584 589 DAYK----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYH 664 (744)
Q Consensus 589 ~a~~----~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~ 664 (744)
.+.. +...|++||++|.|. ....++|+..|+..++ +++||-+|+.++.+-+ -+++|. ..+.
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~----------~~AaNaLLKtLEEPp~---~~~fiL~~~~~~~lLp-TIrSRC-q~i~ 168 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAIN----------RAACNALLKTLEEPSP---GRYLWLISAQPARLPA-TIRSRC-QRLE 168 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhC----------HHHHHHHHHHhhCCCC---CCeEEEEECChhhCch-HHHhhh-eEee
Confidence 6643 345799999999984 6678889888888543 4455556666666655 455664 5889
Q ss_pred cCCCCHHHHHHHHHHccCCCHHHHHHHHHhCCCCcHHHHHHH
Q 004584 665 VPTLKTDDAKKVLKQLNVFAEEDVDSASEALNDMPIKKLYML 706 (744)
Q Consensus 665 ~p~~~~~~~~~Il~~~~~~~~~~~~~~~~~~~~g~ir~l~~~ 706 (744)
|++|+.++..+.|... +....+...+ ...++|....++..
T Consensus 169 ~~~~~~~~~~~~L~~~-~~~~~~a~~~-~~l~~G~p~~A~~~ 208 (319)
T PRK08769 169 FKLPPAHEALAWLLAQ-GVSERAAQEA-LDAARGHPGLAAQW 208 (319)
T ss_pred CCCcCHHHHHHHHHHc-CCChHHHHHH-HHHcCCCHHHHHHH
Confidence 9999999999988865 4455544333 45555655444443
No 357
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=1.3e-07 Score=100.43 Aligned_cols=163 Identities=16% Similarity=0.106 Sum_probs=106.5
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhcCCC----------EEEEcccccc--------cccch----------------h
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFP----------FVKIISAESM--------IGLHE----------------S 577 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~~~~----------~i~v~~~~~~--------~g~~~----------------~ 577 (744)
.-+...||+||+|+||+++|.++|...-.. +...+.|+.+ -|... .
T Consensus 24 rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (314)
T PRK07399 24 RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQ 103 (314)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhcccccccccc
Confidence 345789999999999999999998653211 1111222211 01100 0
Q ss_pred hHhhHHHHHHHHHh----cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCcc
Q 004584 578 TKCAQIVKVFEDAY----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSV 653 (744)
Q Consensus 578 ~~~~~i~~if~~a~----~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~ 653 (744)
-+.+.++++.+.+. .+...|++||++|.+. ....++|+..|+..+ . .++|+ .|+.++.+-+
T Consensus 104 I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~----------~~aaNaLLK~LEEPp--~-~~fIL-i~~~~~~Ll~- 168 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN----------EAAANALLKTLEEPG--N-GTLIL-IAPSPESLLP- 168 (314)
T ss_pred CcHHHHHHHHHHHccCcccCCceEEEEEchhhcC----------HHHHHHHHHHHhCCC--C-CeEEE-EECChHhCcH-
Confidence 12345677766654 3567899999999974 567888999998864 2 34444 5556665555
Q ss_pred ccccccceEEEcCCCCHHHHHHHHHHccCCCHHHH-HHHHHhCCCCcHHHHHHHHHHH
Q 004584 654 GICDAFSVTYHVPTLKTDDAKKVLKQLNVFAEEDV-DSASEALNDMPIKKLYMLIEMA 710 (744)
Q Consensus 654 ~l~~rf~~~i~~p~~~~~~~~~Il~~~~~~~~~~~-~~~~~~~~~g~ir~l~~~l~~a 710 (744)
.+++| +..++|++++.+++.++|++.......+. ...+...+.|+.+.++..++..
T Consensus 169 TI~SR-cq~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~l~~~a~Gs~~~al~~l~~~ 225 (314)
T PRK07399 169 TIVSR-CQIIPFYRLSDEQLEQVLKRLGDEEILNINFPELLALAQGSPGAAIANIEQL 225 (314)
T ss_pred HHHhh-ceEEecCCCCHHHHHHHHHHhhccccchhHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34555 57999999999999999998643222111 2455667899999998887654
No 358
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.79 E-value=1.9e-07 Score=106.96 Aligned_cols=209 Identities=12% Similarity=0.170 Sum_probs=114.4
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecc---c
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNG---P 289 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~---~ 289 (744)
+..+++ +.|.++.++++ +.++..... +..+.+-++|+||||||||++++.+|+.++.......+. .
T Consensus 80 P~~lde--l~~~~~ki~~l-~~~l~~~~~--------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~ 148 (637)
T TIGR00602 80 PETQHE--LAVHKKKIEEV-ETWLKAQVL--------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPD 148 (637)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHhccc--------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhc
Confidence 456777 99999999988 777654322 223445589999999999999999999884211110111 1
Q ss_pred ch-------------hcccccchHHHHHHHHHHHHhcccccC--CCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHH
Q 004584 290 EV-------------LSKFVGETEKNIRDLFADAENDQRTRG--DQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQ 354 (744)
Q Consensus 290 ~l-------------~~~~~g~~~~~i~~~f~~a~~~~~~~~--~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~ 354 (744)
.. +..+ ....+..+.++..+.......+ ......||||||++.++.. + .+.+..
T Consensus 149 ~~~~~~~~~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~---------~~~lq~ 217 (637)
T TIGR00602 149 FQKNDHKVTLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D---------TRALHE 217 (637)
T ss_pred ccccccccchhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h---------HHHHHH
Confidence 00 0111 1223344555555542211110 1123569999999987632 1 112333
Q ss_pred HHH-hccCccCCCcEEEEEEeCC-CC--------------ccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccc-
Q 004584 355 LLT-KIDGVESLNNVLLIGMTNR-KD--------------MLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKE- 417 (744)
Q Consensus 355 LL~-~~d~~~~~~~v~vI~~tn~-~~--------------~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~- 417 (744)
+|. ... ..+.+.+|++++. +. .+.+++++..|.. +|.|.+.........|+..+.....
T Consensus 218 lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~~E~~~ 293 (637)
T TIGR00602 218 ILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIVTIEAKK 293 (637)
T ss_pred HHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHHHhhhhc
Confidence 333 211 1234555555442 21 0236777533443 6899999999977777766654211
Q ss_pred ---cCCCCCcccHHHHHHhcCCCChHHHHHHHHHHHH
Q 004584 418 ---NSFLAPDVNLQELAARTKNYSGAELEGVAKSAVS 451 (744)
Q Consensus 418 ---~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~ 451 (744)
...+..+..+..++....| |++..+..-..
T Consensus 294 ~~~~~~~p~~~~l~~I~~~s~G----DiRsAIn~LQf 326 (637)
T TIGR00602 294 NGEKIKVPKKTSVELLCQGCSG----DIRSAINSLQF 326 (637)
T ss_pred cccccccCCHHHHHHHHHhCCC----hHHHHHHHHHH
Confidence 1111223356677775544 77665554433
No 359
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.79 E-value=7.3e-08 Score=92.38 Aligned_cols=141 Identities=21% Similarity=0.307 Sum_probs=86.8
Q ss_pred chHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE--------------ecc
Q 004584 223 GLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI--------------VNG 288 (744)
Q Consensus 223 Gl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~--------------v~~ 288 (744)
|.++.++.+ ..++..- +.|..+||+||+|+||+++|+++|+.+.+..... -..
T Consensus 1 gq~~~~~~L-~~~~~~~------------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~ 67 (162)
T PF13177_consen 1 GQEEIIELL-KNLIKSG------------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNH 67 (162)
T ss_dssp S-HHHHHHH-HHHHHCT------------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-C
T ss_pred CcHHHHHHH-HHHHHcC------------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccC
Confidence 556666666 4444332 3345799999999999999999999985433210 001
Q ss_pred cchhccc-c----cchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCcc
Q 004584 289 PEVLSKF-V----GETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE 363 (744)
Q Consensus 289 ~~l~~~~-~----g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~ 363 (744)
+++.--. . .-....++++.+.+.... . .+...|++|||+|.+. ....+.||..|+ +
T Consensus 68 ~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~-~---~~~~KviiI~~ad~l~-------------~~a~NaLLK~LE--e 128 (162)
T PF13177_consen 68 PDFIIIKPDKKKKSIKIDQIREIIEFLSLSP-S---EGKYKVIIIDEADKLT-------------EEAQNALLKTLE--E 128 (162)
T ss_dssp TTEEEEETTTSSSSBSHHHHHHHHHHCTSS--T---TSSSEEEEEETGGGS--------------HHHHHHHHHHHH--S
T ss_pred cceEEEecccccchhhHHHHHHHHHHHHHHH-h---cCCceEEEeehHhhhh-------------HHHHHHHHHHhc--C
Confidence 1111000 0 012356666665543322 1 2345699999999874 457788999998 5
Q ss_pred CCCcEEEEEEeCCCCccchhhcCCCccceEEEEcC
Q 004584 364 SLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISL 398 (744)
Q Consensus 364 ~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~ 398 (744)
+..++.+|.+|+.++.|-|.+++ |+. .+.|+.
T Consensus 129 pp~~~~fiL~t~~~~~il~TI~S--Rc~-~i~~~~ 160 (162)
T PF13177_consen 129 PPENTYFILITNNPSKILPTIRS--RCQ-VIRFRP 160 (162)
T ss_dssp TTTTEEEEEEES-GGGS-HHHHT--TSE-EEEE--
T ss_pred CCCCEEEEEEECChHHChHHHHh--hce-EEecCC
Confidence 56789999999999999999999 754 455554
No 360
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.78 E-value=1.1e-07 Score=101.55 Aligned_cols=152 Identities=17% Similarity=0.213 Sum_probs=96.8
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhcCC--------CEEEEcccccccccchhhHhhHHHHHHHHHh----cCCCeEEE
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDSDF--------PFVKIISAESMIGLHESTKCAQIVKVFEDAY----KSPLSIII 599 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~~~--------~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~----~~~~~il~ 599 (744)
..+...||+||+|+|||++|+++|....+ .+..+... -| ..-+.+.++++.+.+. .+...|++
T Consensus 24 ~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~---~~--~~i~v~~ir~~~~~~~~~p~~~~~kv~i 98 (313)
T PRK05564 24 RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI---NK--KSIGVDDIRNIIEEVNKKPYEGDKKVII 98 (313)
T ss_pred CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc---cC--CCCCHHHHHHHHHHHhcCcccCCceEEE
Confidence 33456699999999999999999985422 22222110 11 1123345777766543 34567999
Q ss_pred EeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCCCCHHHHHHHHHH
Q 004584 600 LDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQ 679 (744)
Q Consensus 600 iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~ 679 (744)
||++|.+. ....++|+..|+..++ ..++|+ +|+.++.+-+ .+++|. ..++|++++.+++...+++
T Consensus 99 I~~ad~m~----------~~a~naLLK~LEepp~--~t~~il-~~~~~~~ll~-TI~SRc-~~~~~~~~~~~~~~~~l~~ 163 (313)
T PRK05564 99 IYNSEKMT----------EQAQNAFLKTIEEPPK--GVFIIL-LCENLEQILD-TIKSRC-QIYKLNRLSKEEIEKFISY 163 (313)
T ss_pred EechhhcC----------HHHHHHHHHHhcCCCC--CeEEEE-EeCChHhCcH-HHHhhc-eeeeCCCcCHHHHHHHHHH
Confidence 99999873 5678889998887543 234444 4455665554 344554 6999999999999988876
Q ss_pred c-cCCCHHHHHHHHHhCCCCcHHHHH
Q 004584 680 L-NVFAEEDVDSASEALNDMPIKKLY 704 (744)
Q Consensus 680 ~-~~~~~~~~~~~~~~~~~g~ir~l~ 704 (744)
. ...+++++..+ ..+++|+...+.
T Consensus 164 ~~~~~~~~~~~~l-~~~~~g~~~~a~ 188 (313)
T PRK05564 164 KYNDIKEEEKKSA-IAFSDGIPGKVE 188 (313)
T ss_pred HhcCCCHHHHHHH-HHHcCCCHHHHH
Confidence 4 34555555444 345555554443
No 361
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=2.3e-07 Score=98.22 Aligned_cols=158 Identities=12% Similarity=0.044 Sum_probs=100.3
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhcCCC-------E---------EEEcccccc-ccc--chhhHhhHHHHHHHHHh--
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDSDFP-------F---------VKIISAESM-IGL--HESTKCAQIVKVFEDAY-- 591 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~~~~-------~---------i~v~~~~~~-~g~--~~~~~~~~i~~if~~a~-- 591 (744)
.+...||+||+|+||+++|+++|...-+. + -.-+.|+.. +.. ...-+.+.+|++.+.+.
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~ 102 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQH 102 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhc
Confidence 34567899999999999999998653220 0 000111111 100 01124557777666653
Q ss_pred --cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCCCC
Q 004584 592 --KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLK 669 (744)
Q Consensus 592 --~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~~ 669 (744)
.+...|++||++|+|. ....++||..|+..++ .+++|-+|+.++.+-+ -+++| +..+.|++++
T Consensus 103 ~~~g~~KV~iI~~a~~m~----------~~AaNaLLKtLEEPp~---~~~fiL~t~~~~~llp-TI~SR-C~~~~~~~~~ 167 (325)
T PRK06871 103 AQQGGNKVVYIQGAERLT----------EAAANALLKTLEEPRP---NTYFLLQADLSAALLP-TIYSR-CQTWLIHPPE 167 (325)
T ss_pred cccCCceEEEEechhhhC----------HHHHHHHHHHhcCCCC---CeEEEEEECChHhCch-HHHhh-ceEEeCCCCC
Confidence 4556899999999984 6778889988888543 4566667776766655 34455 5688999999
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHhCCCCcHHHHHHH
Q 004584 670 TDDAKKVLKQLNVFAEEDVDSASEALNDMPIKKLYML 706 (744)
Q Consensus 670 ~~~~~~Il~~~~~~~~~~~~~~~~~~~~g~ir~l~~~ 706 (744)
.+++.+.|.......+.+ ...+..+++|....++.+
T Consensus 168 ~~~~~~~L~~~~~~~~~~-~~~~~~l~~g~p~~A~~~ 203 (325)
T PRK06871 168 EQQALDWLQAQSSAEISE-ILTALRINYGRPLLALTF 203 (325)
T ss_pred HHHHHHHHHHHhccChHH-HHHHHHHcCCCHHHHHHH
Confidence 999998888754433333 333445566655554444
No 362
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.77 E-value=1.7e-07 Score=96.42 Aligned_cols=179 Identities=18% Similarity=0.256 Sum_probs=100.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhcC--------CCcEEecccc------hhc--------cc-----ccchHHHHHHH
Q 004584 254 VKGMLLYGPPGTGKTLMARQIGKMLNG--------MEPKIVNGPE------VLS--------KF-----VGETEKNIRDL 306 (744)
Q Consensus 254 ~~giLL~GppGtGKT~lar~la~~l~~--------~~~~~v~~~~------l~~--------~~-----~g~~~~~i~~~ 306 (744)
..++||+|++|.|||++++.+.+.... .+++.+..+. +.. .| ....+..+..+
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~l 140 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRL 140 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHH
Confidence 457999999999999999999976521 1333333221 111 11 11112223333
Q ss_pred HHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCc--EEEEEEeCCCCc--cch
Q 004584 307 FADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNN--VLLIGMTNRKDM--LDE 382 (744)
Q Consensus 307 f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~--v~vI~~tn~~~~--id~ 382 (744)
++.. + +.+|+|||++.++.... ...+.+++ +|+.+ .+.-+ ++.+|+..-.+. -|+
T Consensus 141 lr~~---~--------vrmLIIDE~H~lLaGs~------~~qr~~Ln-~LK~L---~NeL~ipiV~vGt~~A~~al~~D~ 199 (302)
T PF05621_consen 141 LRRL---G--------VRMLIIDEFHNLLAGSY------RKQREFLN-ALKFL---GNELQIPIVGVGTREAYRALRTDP 199 (302)
T ss_pred HHHc---C--------CcEEEeechHHHhcccH------HHHHHHHH-HHHHH---hhccCCCeEEeccHHHHHHhccCH
Confidence 3332 2 34999999999863221 11223333 33333 22223 444443322222 278
Q ss_pred hhcCCCccceEEEEcCCC-HHHHHHHHHHHHhccccc--CCCCCcccHHHHHHhcCCCChHHHHHHHHHHHHHHHHhc
Q 004584 383 ALLRPGRLEVQVEISLPD-ENGRLQILQIHTNKMKEN--SFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQ 457 (744)
Q Consensus 383 al~r~gRf~~~i~i~~Pd-~~~r~~Il~~~~~~~~~~--~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~ 457 (744)
.+.+ ||+. +.+|... .++-..++...-+.++.. ..+....-...+-..+.|..| ++..++..|+..|++..
T Consensus 200 QLa~--RF~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~sG 273 (302)
T PF05621_consen 200 QLAS--RFEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRSG 273 (302)
T ss_pred HHHh--ccCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhcC
Confidence 8887 9984 4555443 344556776666655522 123333334677788888665 78899999999998743
No 363
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=3.1e-08 Score=103.99 Aligned_cols=102 Identities=29% Similarity=0.536 Sum_probs=74.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhc-ccccch-HHHHHHHHHHHHhcccccCCCCCeeEEEEcCcc
Q 004584 255 KGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS-KFVGET-EKNIRDLFADAENDQRTRGDQSDLHVIIFDEID 332 (744)
Q Consensus 255 ~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~-~~~g~~-~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid 332 (744)
.+|||.||+|+|||+||+.+|+.+ ..++.+.+|..+.. .|+|+. +.-|.+++..|...-... .-.|+||||+|
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~l-dVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekA----QqGIVflDEvD 301 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVL-DVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKA----QQGIVFLDEVD 301 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHh-CCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHH----hcCeEEEehhh
Confidence 479999999999999999999999 58888999998886 788875 556778887776442211 11399999999
Q ss_pred hhcccCCCCCCCCcc-HHHHHHHHHHhccC
Q 004584 333 AICKSRGSTRDGTGV-HDSIVNQLLTKIDG 361 (744)
Q Consensus 333 ~l~~~~~~~~~~~~~-~~~~~~~LL~~~d~ 361 (744)
.|..+..+.....++ ..-+...||..++|
T Consensus 302 Ki~~~~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 302 KITKKAESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred hhcccCccccccccccchhHHHHHHHHhcc
Confidence 998554433222122 23456668888775
No 364
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.76 E-value=1.2e-07 Score=101.65 Aligned_cols=179 Identities=21% Similarity=0.175 Sum_probs=98.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEecccchhcccccchHHHHHHHHHHHH-------hcccccCCCCCe
Q 004584 253 HVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGETEKNIRDLFADAE-------NDQRTRGDQSDL 323 (744)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~-------~~~~~~~~~~~p 323 (744)
...+|||+|++||||+++|+++..... ..+++.+||..+.... .-..+|.... ...+..-.....
T Consensus 21 ~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~------l~~~lfG~~~g~~~ga~~~~~G~~~~a~g 94 (329)
T TIGR02974 21 LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENL------LDSELFGHEAGAFTGAQKRHQGRFERADG 94 (329)
T ss_pred CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHH------HHHHHhccccccccCcccccCCchhhCCC
Confidence 345799999999999999999987653 3578889997653211 0112221110 000000001112
Q ss_pred eEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCcc---------CCCcEEEEEEeCCCC-------ccchhhcCC
Q 004584 324 HVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE---------SLNNVLLIGMTNRKD-------MLDEALLRP 387 (744)
Q Consensus 324 ~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~---------~~~~v~vI~~tn~~~-------~id~al~r~ 387 (744)
.+||||||+.|.. .+...|+..++.-. ...++.+|++|+..- .+.+.|..
T Consensus 95 GtL~Ldei~~L~~-------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~- 160 (329)
T TIGR02974 95 GTLFLDELATASL-------------LVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD- 160 (329)
T ss_pred CEEEeCChHhCCH-------------HHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH-
Confidence 3999999998842 23334444443211 124689999997641 23344444
Q ss_pred CccceEEEEcCCCHHHHH----HHHHHHHhcccc----cC-CCCCcccHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 004584 388 GRLEVQVEISLPDENGRL----QILQIHTNKMKE----NS-FLAPDVNLQELAARTKNYSGAELEGVAKSAVSFA 453 (744)
Q Consensus 388 gRf~~~i~i~~Pd~~~r~----~Il~~~~~~~~~----~~-~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a 453 (744)
|+. .+.|.+|...+|. .+++.++..+.. .. .-..+..+..|....-.-+-++|+++++.++..+
T Consensus 161 -rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 161 -RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred -Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 553 2455566655554 344444443321 11 1123334555655554446799999999887654
No 365
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=2e-07 Score=98.64 Aligned_cols=136 Identities=18% Similarity=0.251 Sum_probs=96.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhcCCCcEE---------------ecccchhccc--cc--chHHHHHHHHHHHHhcc
Q 004584 254 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI---------------VNGPEVLSKF--VG--ETEKNIRDLFADAENDQ 314 (744)
Q Consensus 254 ~~giLL~GppGtGKT~lar~la~~l~~~~~~~---------------v~~~~l~~~~--~g--~~~~~i~~~f~~a~~~~ 314 (744)
+..+||+||+|+||+++|+++|+.+.+..... -+-+++..-. .| -....+|++-+.+...
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~- 102 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQH- 102 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhc-
Confidence 45799999999999999999999996532110 0112221100 11 1345677766555433
Q ss_pred cccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEE
Q 004584 315 RTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQV 394 (744)
Q Consensus 315 ~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i 394 (744)
|..+ ...|++||++|.+. ....|.||+.++ ++..++++|.+|+.++.+.|.+++ |+. .+
T Consensus 103 ~~~g---~~KV~iI~~a~~m~-------------~~AaNaLLKtLE--EPp~~~~fiL~t~~~~~llpTI~S--RC~-~~ 161 (325)
T PRK06871 103 AQQG---GNKVVYIQGAERLT-------------EAAANALLKTLE--EPRPNTYFLLQADLSAALLPTIYS--RCQ-TW 161 (325)
T ss_pred cccC---CceEEEEechhhhC-------------HHHHHHHHHHhc--CCCCCeEEEEEECChHhCchHHHh--hce-EE
Confidence 2222 24599999999874 456688999998 566788999999999999999999 765 68
Q ss_pred EEcCCCHHHHHHHHHHH
Q 004584 395 EISLPDENGRLQILQIH 411 (744)
Q Consensus 395 ~i~~Pd~~~r~~Il~~~ 411 (744)
.|++|+.++..+.|...
T Consensus 162 ~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQ 178 (325)
T ss_pred eCCCCCHHHHHHHHHHH
Confidence 89999999888887754
No 366
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.75 E-value=6.9e-08 Score=104.92 Aligned_cols=135 Identities=19% Similarity=0.273 Sum_probs=79.6
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhcCCC-------EEEEcc---ccccc-ccchhh-H----hhHHHHHHHHHhcC--CC
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDSDFP-------FVKIIS---AESMI-GLHEST-K----CAQIVKVFEDAYKS--PL 595 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~~~~-------~i~v~~---~~~~~-g~~~~~-~----~~~i~~if~~a~~~--~~ 595 (744)
..+++|+||||||||++|+.+|...... ++.+.. .+.++ |..... . ...+.++...|... .+
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 4689999999999999999999765321 222211 11122 221110 0 01234455666543 47
Q ss_pred eEEEEeccchhhccCCCCcchhHHHHHHHHHHhccC--------C-----------CCCCcEEEEEeCCCCC----CCCc
Q 004584 596 SIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRL--------P-----------PKGKKLLVIGTTSEVS----FLDS 652 (744)
Q Consensus 596 ~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~--------~-----------~~~~~v~vi~~tn~~~----~l~~ 652 (744)
.+||||||++.. ...+...++.+|+.- + .-..++.||||+|..+ .+|.
T Consensus 274 ~vliIDEINRan---------i~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~ 344 (459)
T PRK11331 274 YVFIIDEINRAN---------LSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDY 344 (459)
T ss_pred cEEEEehhhccC---------HHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhccH
Confidence 999999999853 122333333433310 0 1124799999999987 5665
Q ss_pred cccccccceEEEcCC-CCHHHHHHHHHH
Q 004584 653 VGICDAFSVTYHVPT-LKTDDAKKVLKQ 679 (744)
Q Consensus 653 ~~l~~rf~~~i~~p~-~~~~~~~~Il~~ 679 (744)
.+++||. .+++.| ++..++.+.+..
T Consensus 345 -AlrRRF~-fi~i~p~~~~~~~~~~l~~ 370 (459)
T PRK11331 345 -ALRRRFS-FIDIEPGFDTPQFRNFLLN 370 (459)
T ss_pred -HHHhhhh-eEEecCCCChHHHHHHHHh
Confidence 6778897 455554 665556555543
No 367
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.74 E-value=5e-08 Score=101.43 Aligned_cols=150 Identities=17% Similarity=0.233 Sum_probs=87.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhcCCCcE--EecccchhcccccchHHHHHHHHHHHHhccc---ccCCCCCeeEEE
Q 004584 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK--IVNGPEVLSKFVGETEKNIRDLFADAENDQR---TRGDQSDLHVII 327 (744)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~la~~l~~~~~~--~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~---~~~~~~~p~Il~ 327 (744)
..+++||+||+|||||++++.+-+.+...... .++.+.. .+...+.++.+....... .....+..+|+|
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 45689999999999999999988776543322 2222211 233344444332221110 001223457999
Q ss_pred EcCcchhcccCCCCCCCCccHHHHHHHHHHhccCc-------cCCCcEEEEEEeCCCC---ccchhhcCCCccceEEEEc
Q 004584 328 FDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV-------ESLNNVLLIGMTNRKD---MLDEALLRPGRLEVQVEIS 397 (744)
Q Consensus 328 iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~-------~~~~~v~vI~~tn~~~---~id~al~r~gRf~~~i~i~ 397 (744)
|||++.-.+..... ...-+++.|+++.-... ..-.++.+||++++.. .+++++.| .|. .+.++
T Consensus 106 iDDlN~p~~d~ygt----q~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f~-i~~~~ 178 (272)
T PF12775_consen 106 IDDLNMPQPDKYGT----QPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HFN-ILNIP 178 (272)
T ss_dssp EETTT-S---TTS------HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TEE-EEE--
T ss_pred ecccCCCCCCCCCC----cCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--heE-EEEec
Confidence 99999766554332 22346667776552211 1224688999988643 48899998 665 78999
Q ss_pred CCCHHHHHHHHHHHHhcc
Q 004584 398 LPDENGRLQILQIHTNKM 415 (744)
Q Consensus 398 ~Pd~~~r~~Il~~~~~~~ 415 (744)
.|+.+....|+...+...
T Consensus 179 ~p~~~sl~~If~~il~~~ 196 (272)
T PF12775_consen 179 YPSDESLNTIFSSILQSH 196 (272)
T ss_dssp --TCCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhhh
Confidence 999999999998877654
No 368
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=2e-07 Score=98.57 Aligned_cols=158 Identities=22% Similarity=0.291 Sum_probs=104.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE------------ecccchhcc-----ccc------chHHHHHHHHHH
Q 004584 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI------------VNGPEVLSK-----FVG------ETEKNIRDLFAD 309 (744)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~la~~l~~~~~~~------------v~~~~l~~~-----~~g------~~~~~i~~~f~~ 309 (744)
-+..+||+||+|+||+++|.++|+.+.+..... -+-+++.-- ..| -.-..+|++.+.
T Consensus 25 l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~ 104 (319)
T PRK08769 25 LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQK 104 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHH
Confidence 345799999999999999999999885432110 011122100 011 124456666655
Q ss_pred HHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCc
Q 004584 310 AENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGR 389 (744)
Q Consensus 310 a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gR 389 (744)
+... |..+ ...|++||++|.+. ....|.||+.++ ++..++++|.+|+.++.|.|.+++ |
T Consensus 105 ~~~~-p~~g---~~kV~iI~~ae~m~-------------~~AaNaLLKtLE--EPp~~~~fiL~~~~~~~lLpTIrS--R 163 (319)
T PRK08769 105 LALT-PQYG---IAQVVIVDPADAIN-------------RAACNALLKTLE--EPSPGRYLWLISAQPARLPATIRS--R 163 (319)
T ss_pred HhhC-cccC---CcEEEEeccHhhhC-------------HHHHHHHHHHhh--CCCCCCeEEEEECChhhCchHHHh--h
Confidence 5433 2222 23599999999884 346678888888 455688888889999999999999 7
Q ss_pred cceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHH
Q 004584 390 LEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAE 441 (744)
Q Consensus 390 f~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~d 441 (744)
+. .+.|+.|+.++..+.|... . .+..+...++..+.|-.+..
T Consensus 164 Cq-~i~~~~~~~~~~~~~L~~~----~-----~~~~~a~~~~~l~~G~p~~A 205 (319)
T PRK08769 164 CQ-RLEFKLPPAHEALAWLLAQ----G-----VSERAAQEALDAARGHPGLA 205 (319)
T ss_pred he-EeeCCCcCHHHHHHHHHHc----C-----CChHHHHHHHHHcCCCHHHH
Confidence 65 6889999998887777632 1 12233456677777755543
No 369
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.73 E-value=6.9e-08 Score=103.49 Aligned_cols=199 Identities=20% Similarity=0.165 Sum_probs=107.9
Q ss_pred cCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEecccchhcccccc
Q 004584 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGE 298 (744)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~~~g~ 298 (744)
+-|-+..++++++++-... +...+|||+|++||||+++|+++..... ..+++.++|..+-..
T Consensus 8 liG~S~~~~~~~~~i~~~a------------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~---- 71 (326)
T PRK11608 8 LLGEANSFLEVLEQVSRLA------------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN---- 71 (326)
T ss_pred cEECCHHHHHHHHHHHHHh------------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHH----
Confidence 6677777777744332211 3345799999999999999999987653 457888999875211
Q ss_pred hHHHHHHHHHHHHhc-------ccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCc--cC-----
Q 004584 299 TEKNIRDLFADAEND-------QRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV--ES----- 364 (744)
Q Consensus 299 ~~~~i~~~f~~a~~~-------~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~--~~----- 364 (744)
..-..+|...... ....-.......|||||+|.+.+ .+...|+..++.- ..
T Consensus 72 --~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~-------------~~Q~~L~~~l~~~~~~~~g~~~ 136 (326)
T PRK11608 72 --LLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM-------------LVQEKLLRVIEYGELERVGGSQ 136 (326)
T ss_pred --HHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCH-------------HHHHHHHHHHhcCcEEeCCCCc
Confidence 0011122111000 00000001123899999999852 2333444444321 11
Q ss_pred --CCcEEEEEEeCCC-------CccchhhcCCCccceEEEEcCCCHHHHH----HHHHHHHhcccccC--C---CCCccc
Q 004584 365 --LNNVLLIGMTNRK-------DMLDEALLRPGRLEVQVEISLPDENGRL----QILQIHTNKMKENS--F---LAPDVN 426 (744)
Q Consensus 365 --~~~v~vI~~tn~~-------~~id~al~r~gRf~~~i~i~~Pd~~~r~----~Il~~~~~~~~~~~--~---~~~~~~ 426 (744)
..++.+|++|+.. ..+.+.|.. ||. .+.|.+|...+|. .++..++..+.... . -.+...
T Consensus 137 ~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~a 213 (326)
T PRK11608 137 PLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERA 213 (326)
T ss_pred eeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 1258899988764 223455554 553 2345556555553 34444443332110 0 112233
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHH
Q 004584 427 LQELAARTKNYSGAELEGVAKSAVSFA 453 (744)
Q Consensus 427 l~~la~~t~g~sg~dl~~l~~~A~~~a 453 (744)
+..|....---+-++|+++++.|+..+
T Consensus 214 l~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 214 RETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 455555544446689999999887543
No 370
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.73 E-value=3.5e-07 Score=105.52 Aligned_cols=127 Identities=12% Similarity=0.200 Sum_probs=83.7
Q ss_pred eEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCC------------------CCCCcEEEEEeCCCC--CCCCcccc
Q 004584 596 SIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP------------------PKGKKLLVIGTTSEV--SFLDSVGI 655 (744)
Q Consensus 596 ~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~------------------~~~~~v~vi~~tn~~--~~l~~~~l 655 (744)
++|||||++.|. ...++.|+..|+.-. +...++.||+++|.. ..+++ .+
T Consensus 219 GtL~Ldei~~L~----------~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~-~l 287 (608)
T TIGR00764 219 GVLYIDEIKTMP----------LEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHP-AL 287 (608)
T ss_pred CEEEEEChHhCC----------HHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCH-HH
Confidence 567777777763 456777777774321 112367889999864 34565 66
Q ss_pred ccccc---eEEEcCCC---CHHHHHHHHHH-------c---cCCCHHHHHHHHHhCC---------CCcHHHHHHHHHHH
Q 004584 656 CDAFS---VTYHVPTL---KTDDAKKVLKQ-------L---NVFAEEDVDSASEALN---------DMPIKKLYMLIEMA 710 (744)
Q Consensus 656 ~~rf~---~~i~~p~~---~~~~~~~Il~~-------~---~~~~~~~~~~~~~~~~---------~g~ir~l~~~l~~a 710 (744)
+.||+ ..+.|+.. +.+.+.++++. . ..++++.+.+++..++ +...|++-++++.|
T Consensus 288 ~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A 367 (608)
T TIGR00764 288 RSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAA 367 (608)
T ss_pred HHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence 78998 66776542 35555444443 1 2466777766664332 57789999999999
Q ss_pred HhcccCCcccccccCCCCcchhhHHHHHHH
Q 004584 711 AQGEQGGAAEAIYSGREKIKISHFYDCLQD 740 (744)
Q Consensus 711 ~~~a~~~~~~a~~~g~~~It~e~~~~al~~ 740 (744)
...|.. ++...|+.+|+.+|++.
T Consensus 368 ~~iA~~-------~~~~~I~~ehV~~Ai~~ 390 (608)
T TIGR00764 368 GDIAKS-------SGKVYVTAEHVLKAKKL 390 (608)
T ss_pred HHHHHh-------cCCceecHHHHHHHHHH
Confidence 766543 36678999999999873
No 371
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.73 E-value=1.1e-07 Score=92.18 Aligned_cols=139 Identities=23% Similarity=0.311 Sum_probs=86.0
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCC----cEEecc
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME----PKIVNG 288 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~----~~~v~~ 288 (744)
+..+.| |.|-++.++.+ . .+ .+-|- ..++++.||||||||+-+.++|+++-+.. +..+|.
T Consensus 23 P~~l~d--IVGNe~tv~rl-~-vi----------a~~gn--mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNA 86 (333)
T KOG0991|consen 23 PSVLQD--IVGNEDTVERL-S-VI----------AKEGN--MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNA 86 (333)
T ss_pred chHHHH--hhCCHHHHHHH-H-HH----------HHcCC--CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccC
Confidence 445667 99999998887 2 22 22221 22699999999999999999999985432 344565
Q ss_pred cchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcE
Q 004584 289 PEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNV 368 (744)
Q Consensus 289 ~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v 368 (744)
++-.+- +..++--+.|.+-+-.-|. +. -.|+++||.|++.. + .+ ..|-..|+-.. +..
T Consensus 87 SdeRGI---DvVRn~IK~FAQ~kv~lp~-gr---hKIiILDEADSMT~---------g-AQ---QAlRRtMEiyS--~tt 144 (333)
T KOG0991|consen 87 SDERGI---DVVRNKIKMFAQKKVTLPP-GR---HKIIILDEADSMTA---------G-AQ---QALRRTMEIYS--NTT 144 (333)
T ss_pred cccccc---HHHHHHHHHHHHhhccCCC-Cc---eeEEEeeccchhhh---------H-HH---HHHHHHHHHHc--ccc
Confidence 543221 3344445566655444332 11 24999999999851 1 12 22333333222 345
Q ss_pred EEEEEeCCCCccchhhcCCCccc
Q 004584 369 LLIGMTNRKDMLDEALLRPGRLE 391 (744)
Q Consensus 369 ~vI~~tn~~~~id~al~r~gRf~ 391 (744)
.+..++|..+.|-+.+.+ |+.
T Consensus 145 RFalaCN~s~KIiEPIQS--RCA 165 (333)
T KOG0991|consen 145 RFALACNQSEKIIEPIQS--RCA 165 (333)
T ss_pred hhhhhhcchhhhhhhHHh--hhH
Confidence 677788998888777777 654
No 372
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.73 E-value=5.1e-08 Score=106.25 Aligned_cols=199 Identities=24% Similarity=0.286 Sum_probs=116.5
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEeccc
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGP 289 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~ 289 (744)
...+|++ |.|-..++.++++.+- ...+.+..||+.|.+||||.++||++.+... ..+|+.+||.
T Consensus 240 a~y~f~~--Iig~S~~m~~~~~~ak------------r~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCa 305 (560)
T COG3829 240 AKYTFDD--IIGESPAMLRVLELAK------------RIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCA 305 (560)
T ss_pred cccchhh--hccCCHHHHHHHHHHH------------hhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecc
Confidence 4566777 7777777776633321 1234566899999999999999999998763 3578889997
Q ss_pred chhc-------------ccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHH
Q 004584 290 EVLS-------------KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLL 356 (744)
Q Consensus 290 ~l~~-------------~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL 356 (744)
.+-. .|.|....--.-+|+.|..+ -||+|||..+. -.+...||
T Consensus 306 AiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG-----------TLFLDEIgemp-------------l~LQaKLL 361 (560)
T COG3829 306 AIPETLLESELFGYEKGAFTGASKGGKPGLFELANGG-----------TLFLDEIGEMP-------------LPLQAKLL 361 (560)
T ss_pred cCCHHHHHHHHhCcCCccccccccCCCCcceeeccCC-----------eEEehhhccCC-------------HHHHHHHH
Confidence 5543 12222221122345544433 89999999874 23444455
Q ss_pred HhccC-----c---c-CCCcEEEEEEeCCCCccchhhcCCCccce-------EEEEcCCCHHHHHH--------HHHHHH
Q 004584 357 TKIDG-----V---E-SLNNVLLIGMTNRKDMLDEALLRPGRLEV-------QVEISLPDENGRLQ--------ILQIHT 412 (744)
Q Consensus 357 ~~~d~-----~---~-~~~~v~vI~~tn~~~~id~al~r~gRf~~-------~i~i~~Pd~~~r~~--------Il~~~~ 412 (744)
..++. + . ..-+|.||+|||+. +-. +...|+|.. .+.+..|...+|.+ +++.+.
T Consensus 362 RVLQEkei~rvG~t~~~~vDVRIIAATN~n--L~~-~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s 438 (560)
T COG3829 362 RVLQEKEIERVGGTKPIPVDVRIIAATNRN--LEK-MIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFS 438 (560)
T ss_pred HHHhhceEEecCCCCceeeEEEEEeccCcC--HHH-HHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHH
Confidence 55442 1 1 12369999999984 111 112233321 35667777666653 233333
Q ss_pred hcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHHH
Q 004584 413 NKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVS 451 (744)
Q Consensus 413 ~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~ 451 (744)
++++.+..-..+..+..|.+..---+-++|+++++++..
T Consensus 439 ~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 439 RRYGRNVKGLSPDALALLLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred HHcCCCcccCCHHHHHHHHhCCCCchHHHHHHHHHHHHh
Confidence 344333221122234444444333366999999998875
No 373
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.72 E-value=7.7e-08 Score=110.58 Aligned_cols=206 Identities=19% Similarity=0.212 Sum_probs=112.7
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEecccc
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPE 290 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~ 290 (744)
...|+. +.|-+..++++++++-... ....+|||+|++||||+++|+++..... ..+++.+||..
T Consensus 192 ~~~~~~--liG~s~~~~~~~~~~~~~a------------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~ 257 (534)
T TIGR01817 192 SGKEDG--IIGKSPAMRQVVDQARVVA------------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAA 257 (534)
T ss_pred cCccCc--eEECCHHHHHHHHHHHHHh------------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCC
Confidence 345666 8888888888844332211 3345799999999999999999998763 45788899987
Q ss_pred hhcccccchHHHHHHHHHHHHh-------cccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCc-
Q 004584 291 VLSKFVGETEKNIRDLFADAEN-------DQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV- 362 (744)
Q Consensus 291 l~~~~~g~~~~~i~~~f~~a~~-------~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~- 362 (744)
+.... .-..+|..... ..+..-......+||||||+.+.+ .+...|+..++.-
T Consensus 258 ~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~-------------~~Q~~Ll~~l~~~~ 318 (534)
T TIGR01817 258 LSETL------LESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISP-------------AFQAKLLRVLQEGE 318 (534)
T ss_pred CCHHH------HHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCH-------------HHHHHHHHHHhcCc
Confidence 63211 01122221100 000000011234999999999852 2333444444321
Q ss_pred -cC-------CCcEEEEEEeCCCC-------ccchhhcCCCccc-eEEEEcCCC--HHHHHHHHHHHHhcccccC---CC
Q 004584 363 -ES-------LNNVLLIGMTNRKD-------MLDEALLRPGRLE-VQVEISLPD--ENGRLQILQIHTNKMKENS---FL 421 (744)
Q Consensus 363 -~~-------~~~v~vI~~tn~~~-------~id~al~r~gRf~-~~i~i~~Pd--~~~r~~Il~~~~~~~~~~~---~~ 421 (744)
.. ..++.+|++|+..- .+.+.|.. |+. ..|.+|+.. .++...|++.++....... .-
T Consensus 319 ~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~ 396 (534)
T TIGR01817 319 FERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLT 396 (534)
T ss_pred EEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCC
Confidence 11 12588999987641 11222222 332 234444333 2334455555555432111 11
Q ss_pred CCcccHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 004584 422 APDVNLQELAARTKNYSGAELEGVAKSAVSFA 453 (744)
Q Consensus 422 ~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a 453 (744)
..+..+..|....-.-+-++|+++++.|+..+
T Consensus 397 ~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 397 ITPSAIRVLMSCKWPGNVRELENCLERTATLS 428 (534)
T ss_pred CCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 23334556666554447799999999887543
No 374
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.72 E-value=1.3e-07 Score=108.87 Aligned_cols=138 Identities=23% Similarity=0.341 Sum_probs=87.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhcCC-CcEEecccchhcccccchHHHHHHHHHHHHhccc--ccC--CCCCeeEEEEc
Q 004584 255 KGMLLYGPPGTGKTLMARQIGKMLNGM-EPKIVNGPEVLSKFVGETEKNIRDLFADAENDQR--TRG--DQSDLHVIIFD 329 (744)
Q Consensus 255 ~giLL~GppGtGKT~lar~la~~l~~~-~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~--~~~--~~~~p~Il~iD 329 (744)
.||||.|+||||||++|+++++.+... ++..+.........+|.. +++........ ..| ......+||+|
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i-----dl~~~~~~g~~~~~~G~L~~A~~GvL~lD 91 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI-----DVEESLAGGQRVTQPGLLDEAPRGVLYVD 91 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch-----hhhhhhhcCcccCCCCCeeeCCCCcEecc
Confidence 589999999999999999999987542 455555322222333331 11111111100 000 00111399999
Q ss_pred CcchhcccCCCCCCCCccHHHHHHHHHHhccCcc-----------CCCcEEEEEEeCCCC---ccchhhcCCCccceEEE
Q 004584 330 EIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE-----------SLNNVLLIGMTNRKD---MLDEALLRPGRLEVQVE 395 (744)
Q Consensus 330 Eid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~-----------~~~~v~vI~~tn~~~---~id~al~r~gRf~~~i~ 395 (744)
||+.+. ..+.+.|+..|+.-. ...++.||+++|..+ .+.++|.. ||..++.
T Consensus 92 Ei~rl~-------------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~ 156 (589)
T TIGR02031 92 MANLLD-------------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVS 156 (589)
T ss_pred chhhCC-------------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeee
Confidence 999874 345555666664211 124689999998875 68899998 9999887
Q ss_pred Ec-CCCHHHHHHHHHHHH
Q 004584 396 IS-LPDENGRLQILQIHT 412 (744)
Q Consensus 396 i~-~Pd~~~r~~Il~~~~ 412 (744)
+. +|+.++|.+|++...
T Consensus 157 ~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 157 LEDVASQDLRVEIVRRER 174 (589)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 76 457778999998765
No 375
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.72 E-value=1.4e-07 Score=98.81 Aligned_cols=102 Identities=15% Similarity=0.154 Sum_probs=57.7
Q ss_pred CeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCC-------CCCcc----ccccccceEE
Q 004584 595 LSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVS-------FLDSV----GICDAFSVTY 663 (744)
Q Consensus 595 ~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~-------~l~~~----~l~~rf~~~i 663 (744)
|+||||||+|.|- -.-...|...|+. .. ..+||-+||+-- ...|. .+.+|+- ++
T Consensus 279 pGVLFIDEvHmLD----------iEcFsfLnralEs---~~-sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRll-II 343 (398)
T PF06068_consen 279 PGVLFIDEVHMLD----------IECFSFLNRALES---EL-SPIIILATNRGITKIRGTDIISPHGIPLDLLDRLL-II 343 (398)
T ss_dssp E-EEEEESGGGSB----------HHHHHHHHHHHTS---TT---EEEEEES-SEEE-BTTS-EEETT--HHHHTTEE-EE
T ss_pred cceEEecchhhcc----------HHHHHHHHHHhcC---CC-CcEEEEecCceeeeccCccCcCCCCCCcchHhhcE-EE
Confidence 7899999999873 3344455555543 22 335566777532 22222 3345543 77
Q ss_pred EcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHhCC-CCcHHHHHHHHHHHH
Q 004584 664 HVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALN-DMPIKKLYMLIEMAA 711 (744)
Q Consensus 664 ~~p~~~~~~~~~Il~~~----~~~~~~~~~~~~~~~~-~g~ir~l~~~l~~a~ 711 (744)
...||+.+|+.+|++-. +...+++....+.... ..++|.++.++..|.
T Consensus 344 ~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a~ 396 (398)
T PF06068_consen 344 RTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPAS 396 (398)
T ss_dssp EE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHHH
T ss_pred ECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhhh
Confidence 88999999999999953 3444555555555544 788999999887764
No 376
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.72 E-value=1.5e-07 Score=111.41 Aligned_cols=198 Identities=24% Similarity=0.291 Sum_probs=113.6
Q ss_pred ccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEecccch
Q 004584 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEV 291 (744)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l 291 (744)
..|++ +.|.+..++++++++-... ....+|||+|++|||||++|+++..... +.+++.++|..+
T Consensus 373 ~~~~~--liG~S~~~~~~~~~~~~~a------------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~ 438 (686)
T PRK15429 373 SEFGE--IIGRSEAMYSVLKQVEMVA------------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAM 438 (686)
T ss_pred ccccc--eeecCHHHHHHHHHHHHHh------------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccC
Confidence 45665 7888887777744332211 2345799999999999999999998753 457888888765
Q ss_pred hcc-----ccc--------chHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHh
Q 004584 292 LSK-----FVG--------ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTK 358 (744)
Q Consensus 292 ~~~-----~~g--------~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~ 358 (744)
... .+| ..... ...|+.+.. .+||||||+.+.. .+...|+..
T Consensus 439 ~~~~~~~~lfg~~~~~~~g~~~~~-~g~le~a~~-----------GtL~Ldei~~L~~-------------~~Q~~L~~~ 493 (686)
T PRK15429 439 PAGLLESDLFGHERGAFTGASAQR-IGRFELADK-----------SSLFLDEVGDMPL-------------ELQPKLLRV 493 (686)
T ss_pred ChhHhhhhhcCcccccccccccch-hhHHHhcCC-----------CeEEEechhhCCH-------------HHHHHHHHH
Confidence 321 111 11111 122333322 3999999998742 233444444
Q ss_pred ccCcc---------CCCcEEEEEEeCCCC--cc-----chhhcCCCccceEEEEcCCCHHHHHH----HHHHHHhccc--
Q 004584 359 IDGVE---------SLNNVLLIGMTNRKD--ML-----DEALLRPGRLEVQVEISLPDENGRLQ----ILQIHTNKMK-- 416 (744)
Q Consensus 359 ~d~~~---------~~~~v~vI~~tn~~~--~i-----d~al~r~gRf~~~i~i~~Pd~~~r~~----Il~~~~~~~~-- 416 (744)
++.-. ...++.+|++|+..- .+ .+.|.. |+. .+.|.+|...+|.+ +++.++.++.
T Consensus 494 l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~ 570 (686)
T PRK15429 494 LQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY--RLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARR 570 (686)
T ss_pred HHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHH
Confidence 43211 124688999998752 11 111211 222 35667777666654 4444444332
Q ss_pred --ccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 004584 417 --ENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFA 453 (744)
Q Consensus 417 --~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a 453 (744)
....-.+...+..|....---+-++|+++++.|+..+
T Consensus 571 ~~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 571 MGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred cCCCCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 1111123334566665554457799999999998644
No 377
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.72 E-value=9e-08 Score=109.06 Aligned_cols=200 Identities=21% Similarity=0.194 Sum_probs=111.2
Q ss_pred cCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEecccchhcccccc
Q 004584 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGE 298 (744)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~~~g~ 298 (744)
+.|.+..++++++++- .. ...+.+|||+|++||||+++|+++..... ..+++.+||..+-....
T Consensus 189 iig~s~~~~~~~~~i~-~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~-- 254 (509)
T PRK05022 189 MIGQSPAMQQLKKEIE-VV-----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA-- 254 (509)
T ss_pred eeecCHHHHHHHHHHH-HH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH--
Confidence 8888888888843322 11 13345899999999999999999998753 35788899987632110
Q ss_pred hHHHHHHHHHHHHhc-------ccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCcc--------
Q 004584 299 TEKNIRDLFADAEND-------QRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE-------- 363 (744)
Q Consensus 299 ~~~~i~~~f~~a~~~-------~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~-------- 363 (744)
-..+|...... .+..-.......|||||||.|.+ .+...|+..++.-.
T Consensus 255 ----e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~-------------~~Q~~Ll~~l~~~~~~~~g~~~ 317 (509)
T PRK05022 255 ----ESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPL-------------ALQAKLLRVLQYGEIQRVGSDR 317 (509)
T ss_pred ----HHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCH-------------HHHHHHHHHHhcCCEeeCCCCc
Confidence 01122211000 00000001123899999999852 23334444443211
Q ss_pred -CCCcEEEEEEeCCCC-------ccchhhcCCCccceEEEEcCCCHHHHHH----HHHHHHhcccc----cCCCCCcccH
Q 004584 364 -SLNNVLLIGMTNRKD-------MLDEALLRPGRLEVQVEISLPDENGRLQ----ILQIHTNKMKE----NSFLAPDVNL 427 (744)
Q Consensus 364 -~~~~v~vI~~tn~~~-------~id~al~r~gRf~~~i~i~~Pd~~~r~~----Il~~~~~~~~~----~~~~~~~~~l 427 (744)
...++.+|++|+..- .+.+.|.. |+. .+.|.+|...+|.+ +++.++++... ...-..+..+
T Consensus 318 ~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~ 394 (509)
T PRK05022 318 SLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQ 394 (509)
T ss_pred ceecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 123689999998752 12233322 333 34566676666543 33344433321 1111233345
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHH
Q 004584 428 QELAARTKNYSGAELEGVAKSAVSFAL 454 (744)
Q Consensus 428 ~~la~~t~g~sg~dl~~l~~~A~~~a~ 454 (744)
..|....---+-++|+++++.|+..+.
T Consensus 395 ~~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 395 AALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 556655544577999999999987654
No 378
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.70 E-value=8.8e-08 Score=109.15 Aligned_cols=206 Identities=17% Similarity=0.173 Sum_probs=111.2
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEeccc
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGP 289 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~ 289 (744)
....|++ +.|-+..++++++++-... ....+|||+|++||||+++|+++..... ..++..++|.
T Consensus 199 ~~~~f~~--~ig~s~~~~~~~~~~~~~A------------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca 264 (520)
T PRK10820 199 DDSAFSQ--IVAVSPKMRQVVEQARKLA------------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCA 264 (520)
T ss_pred ccccccc--eeECCHHHHHHHHHHHHHh------------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccc
Confidence 4567888 8888887777755443211 1234699999999999999999876643 3577889998
Q ss_pred chhcccccchHHHHHHHHHHHHhccc-----ccC--CCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccC-
Q 004584 290 EVLSKFVGETEKNIRDLFADAENDQR-----TRG--DQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDG- 361 (744)
Q Consensus 290 ~l~~~~~g~~~~~i~~~f~~a~~~~~-----~~~--~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~- 361 (744)
.+-... .-..+|..+....+ ..| .......||||||+.+.+. +...|+..++.
T Consensus 265 ~~~~~~------~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~-------------~Q~~Ll~~l~~~ 325 (520)
T PRK10820 265 SIPDDV------VESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPR-------------MQAKLLRFLNDG 325 (520)
T ss_pred cCCHHH------HHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHH-------------HHHHHHHHHhcC
Confidence 763211 01122221110000 000 0011238999999998522 22334443322
Q ss_pred -cc-------CCCcEEEEEEeCCCC-------ccchhhcCCCccceEEEEcCCCHHHHHH----HHHHHHhcc----ccc
Q 004584 362 -VE-------SLNNVLLIGMTNRKD-------MLDEALLRPGRLEVQVEISLPDENGRLQ----ILQIHTNKM----KEN 418 (744)
Q Consensus 362 -~~-------~~~~v~vI~~tn~~~-------~id~al~r~gRf~~~i~i~~Pd~~~r~~----Il~~~~~~~----~~~ 418 (744)
+. ...++.+|++|+.+- .+.+.|.. |+. .+.+.+|...+|.+ ++..++... ...
T Consensus 326 ~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~ 402 (520)
T PRK10820 326 TFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVP 402 (520)
T ss_pred CcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCC
Confidence 11 123678999887742 12333443 544 25666666665552 333333332 211
Q ss_pred CCCCCcccHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 004584 419 SFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFA 453 (744)
Q Consensus 419 ~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a 453 (744)
..-..+..+..|....-.-+-++|++++..|+..+
T Consensus 403 ~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~~ 437 (520)
T PRK10820 403 RPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQL 437 (520)
T ss_pred CCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC
Confidence 11112223445544433336689999998887643
No 379
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.70 E-value=1.2e-07 Score=106.41 Aligned_cols=183 Identities=15% Similarity=0.165 Sum_probs=108.6
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhcC----------------------------CCEEEEcccc---cccccchhhHhh
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDSD----------------------------FPFVKIISAE---SMIGLHESTKCA 581 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~~----------------------------~~~i~v~~~~---~~~g~~~~~~~~ 581 (744)
...+++|.||||||||++|+.++.... .||....... .++|... .
T Consensus 210 ~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~----~ 285 (499)
T TIGR00368 210 GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGP----I 285 (499)
T ss_pred CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhhCCcc----c
Confidence 346899999999999999999986431 1111110000 0111000 0
Q ss_pred HHHHHHHHHhcCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCC----C------CCCcEEEEEeCCCCC--C
Q 004584 582 QIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP----P------KGKKLLVIGTTSEVS--F 649 (744)
Q Consensus 582 ~i~~if~~a~~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~----~------~~~~v~vi~~tn~~~--~ 649 (744)
.-...+..| ..++|||||++.+ +..+++.|+..|+.-. . ...++.+|+++|.-. .
T Consensus 286 ~~pG~i~lA---~~GvLfLDEi~e~----------~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~ 352 (499)
T TIGR00368 286 PLPGEISLA---HNGVLFLDELPEF----------KRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGH 352 (499)
T ss_pred cchhhhhcc---CCCeEecCChhhC----------CHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCc
Confidence 001123333 3479999999986 3677788887775421 0 123688999998631 1
Q ss_pred CC--------------------ccccccccceEEEcCCCCHHHHH-------------HHHHH-------ccC-----C-
Q 004584 650 LD--------------------SVGICDAFSVTYHVPTLKTDDAK-------------KVLKQ-------LNV-----F- 683 (744)
Q Consensus 650 l~--------------------~~~l~~rf~~~i~~p~~~~~~~~-------------~Il~~-------~~~-----~- 683 (744)
++ +..+.+||+..+.+++++.+++. .+.+. +.. .
T Consensus 353 ~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N 432 (499)
T TIGR00368 353 YGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKN 432 (499)
T ss_pred CCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCccc
Confidence 11 11456999999999998755442 12111 111 1
Q ss_pred ---C----------HHHHHHHHHhC---CCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHH
Q 004584 684 ---A----------EEDVDSASEAL---NDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 739 (744)
Q Consensus 684 ---~----------~~~~~~~~~~~---~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~ 739 (744)
+ +++...++... ...+.|....++..|...|+- .|.+.|+.+|+.+|+.
T Consensus 433 ~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArTiAdL-------~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 433 ADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVARTIADL-------KEEKNISREHLAEAIE 497 (499)
T ss_pred ccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh-------cCCCCCCHHHHHHHHh
Confidence 1 12222222211 257888888888888888654 4889999999999985
No 380
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.69 E-value=8.6e-08 Score=108.94 Aligned_cols=183 Identities=10% Similarity=0.168 Sum_probs=109.3
Q ss_pred eeeeeecCCCCChhHHHHHHHhhcCC-CEEEEcccccccccchh---h--Hhh-HH-HHHHHHHhcCCCeEEEEeccchh
Q 004584 535 VTCLLEGPSGSGKTALAATAGIDSDF-PFVKIISAESMIGLHES---T--KCA-QI-VKVFEDAYKSPLSIIILDDIERL 606 (744)
Q Consensus 535 ~~~Ll~GppG~GKT~la~~~a~~~~~-~~i~v~~~~~~~g~~~~---~--~~~-~i-~~if~~a~~~~~~il~iDEid~l 606 (744)
.++||+|+||+|||++|++++..+.. .|+....+. ..|.... . ..+ .+ ...+. ....++++|||++.+
T Consensus 237 ~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~-~~~l~~~~~~~~~~g~~~~~~G~l~---~A~~Gil~iDEi~~l 312 (509)
T smart00350 237 INILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSS-AVGLTAAVTRDPETREFTLEGGALV---LADNGVCCIDEFDKM 312 (509)
T ss_pred ceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCC-cCCccccceEccCcceEEecCccEE---ecCCCEEEEechhhC
Confidence 58999999999999999999987643 233211111 1111000 0 000 00 00111 123479999999997
Q ss_pred hccCCCCcchhHHHHHHHHHHhccCC----C------CCCcEEEEEeCCCCCC-------------CCccccccccceEE
Q 004584 607 LEYVPIGPRFSNIISQTMLVLLKRLP----P------KGKKLLVIGTTSEVSF-------------LDSVGICDAFSVTY 663 (744)
Q Consensus 607 ~~~~~~g~~~~~~~~~~Ll~~l~~~~----~------~~~~v~vi~~tn~~~~-------------l~~~~l~~rf~~~i 663 (744)
. ...++.|++.|++-. . -..++.||||+|..+- +.+ .+.+||+..+
T Consensus 313 ~----------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~-~lLsRFdLi~ 381 (509)
T smart00350 313 D----------DSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPA-PILSRFDLLF 381 (509)
T ss_pred C----------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCCh-HHhCceeeEE
Confidence 4 567788888886521 0 1236789999997532 222 4569998765
Q ss_pred Ec-CCCCHHHHHHHHHHc--------------------------------c---CCCHHHHHHHHHhC------------
Q 004584 664 HV-PTLKTDDAKKVLKQL--------------------------------N---VFAEEDVDSASEAL------------ 695 (744)
Q Consensus 664 ~~-p~~~~~~~~~Il~~~--------------------------------~---~~~~~~~~~~~~~~------------ 695 (744)
.+ .+++.+.-..|+++. . ...++++.+.+..+
T Consensus 382 ~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~ 461 (509)
T smart00350 382 VVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSE 461 (509)
T ss_pred EecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccc
Confidence 55 556655555555541 0 01122222222111
Q ss_pred ----CCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHH
Q 004584 696 ----NDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 739 (744)
Q Consensus 696 ----~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~ 739 (744)
.+.++|.+..+++.|...|.- .++..|+.+|+.+|+.
T Consensus 462 ~~~~~~~t~R~l~sliRla~A~A~l-------~~r~~V~~~Dv~~ai~ 502 (509)
T smart00350 462 ARSSIPITVRQLESIIRLSEAHAKM-------RLSDVVEEADVEEAIR 502 (509)
T ss_pred cccccCcCHHHHHHHHHHHHHHHHH-------cCCCccCHHHHHHHHH
Confidence 134788899988888777543 5889999999999976
No 381
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.69 E-value=7e-09 Score=92.79 Aligned_cols=112 Identities=24% Similarity=0.287 Sum_probs=60.5
Q ss_pred eeeeecCCCCChhHHHHHHHhhcCCCEEEEccc-cc----ccccchhhHhhHHHHHHHHHh-cCCCeEEEEeccchhhcc
Q 004584 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKIISA-ES----MIGLHESTKCAQIVKVFEDAY-KSPLSIIILDDIERLLEY 609 (744)
Q Consensus 536 ~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~-~~----~~g~~~~~~~~~i~~if~~a~-~~~~~il~iDEid~l~~~ 609 (744)
|+||+|+||+|||++|+++|...+..|.+|... +. +.|........ ..|+-.+ ---..|+++|||.+..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~~~GPif~~ill~DEiNrap-- 75 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEFRPGPIFTNILLADEINRAP-- 75 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEEEE-TT-SSEEEEETGGGS---
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEeecChhhhceeeecccccCC--
Confidence 689999999999999999999999999988553 33 34532111000 0010000 0112599999999864
Q ss_pred CCCCcchhHHHHHHHHHHhccCC--------CCCCcEEEEEeCCCCCCCC----ccccccccc
Q 004584 610 VPIGPRFSNIISQTMLVLLKRLP--------PKGKKLLVIGTTSEVSFLD----SVGICDAFS 660 (744)
Q Consensus 610 ~~~g~~~~~~~~~~Ll~~l~~~~--------~~~~~v~vi~~tn~~~~l~----~~~l~~rf~ 660 (744)
...|++|++.|.... .-....+||||-|..+.-. +..+.+||-
T Consensus 76 --------pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 76 --------PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp --------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred --------HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 667888888876531 1123578999999865322 123446663
No 382
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.68 E-value=4.7e-07 Score=101.88 Aligned_cols=189 Identities=15% Similarity=0.156 Sum_probs=106.3
Q ss_pred cchhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccc----------cccch---
Q 004584 510 DRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM----------IGLHE--- 576 (744)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~----------~g~~~--- 576 (744)
..++++..|+.... .+..+..-+||+||||||||++++.+|+++++.+..-..|..+ .+...
T Consensus 26 kKv~eV~~wl~~~~-----~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~ 100 (519)
T PF03215_consen 26 KKVEEVRSWLEEMF-----SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFD 100 (519)
T ss_pred HHHHHHHHHHHHHh-----ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccc
Confidence 34556666665432 1223345688899999999999999999999887765444321 11000
Q ss_pred --hhHhhHHHHH-HHHHh-----------cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCC-cEEEE
Q 004584 577 --STKCAQIVKV-FEDAY-----------KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGK-KLLVI 641 (744)
Q Consensus 577 --~~~~~~i~~i-f~~a~-----------~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~-~v~vi 641 (744)
.......... ++.++ ...+.||+|+|+=.+... -...+...|...+..- .. .++||
T Consensus 101 ~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~------~~~~f~~~L~~~l~~~---~~~PlV~i 171 (519)
T PF03215_consen 101 EFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR------DTSRFREALRQYLRSS---RCLPLVFI 171 (519)
T ss_pred cccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch------hHHHHHHHHHHHHHcC---CCCCEEEE
Confidence 0011111111 11111 134689999999765421 1244555555555432 12 55555
Q ss_pred EeCCC-------CC--------CCCccccccccceEEEcCCCCHHHHHHHHHH----c-----c--CCC-HHHHHHHHHh
Q 004584 642 GTTSE-------VS--------FLDSVGICDAFSVTYHVPTLKTDDAKKVLKQ----L-----N--VFA-EEDVDSASEA 694 (744)
Q Consensus 642 ~~tn~-------~~--------~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~----~-----~--~~~-~~~~~~~~~~ 694 (744)
.+-.. .. ++.+..+....-..|.|.|....-+.+.|++ . + ... ..++...+..
T Consensus 172 iSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~ 251 (519)
T PF03215_consen 172 ISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAE 251 (519)
T ss_pred EecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHH
Confidence 45110 00 2222223333457899999996555554443 2 1 122 2445566666
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 004584 695 LNDMPIKKLYMLIEMAAQ 712 (744)
Q Consensus 695 ~~~g~ir~l~~~l~~a~~ 712 (744)
.+.||||.+++.+++.+.
T Consensus 252 ~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 252 SSNGDIRSAINNLQFWCL 269 (519)
T ss_pred hcCchHHHHHHHHHHHhc
Confidence 778999999999999887
No 383
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=3.4e-07 Score=98.00 Aligned_cols=158 Identities=15% Similarity=0.182 Sum_probs=106.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE---------------ecccchhcccc-----cchHHHHHHHHHHHH
Q 004584 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI---------------VNGPEVLSKFV-----GETEKNIRDLFADAE 311 (744)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~---------------v~~~~l~~~~~-----g~~~~~i~~~f~~a~ 311 (744)
+.+..+||+||+|+||+++|+++|+.+.+..... -+-+++.--.. .-....+|++-+.+.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 3355899999999999999999999996532110 01122211100 012446677666554
Q ss_pred hcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccc
Q 004584 312 NDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLE 391 (744)
Q Consensus 312 ~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~ 391 (744)
... .. +...|++||++|.+. ....|.||+.++ ++..+.++|..|+.++.+.|.+++ |..
T Consensus 102 ~~~-~~---g~~kV~iI~~ae~m~-------------~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTIrS--RCq 160 (334)
T PRK07993 102 EHA-RL---GGAKVVWLPDAALLT-------------DAAANALLKTLE--EPPENTWFFLACREPARLLATLRS--RCR 160 (334)
T ss_pred hcc-cc---CCceEEEEcchHhhC-------------HHHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--ccc
Confidence 432 22 234599999999874 456788999998 566789999999999999999999 776
Q ss_pred eEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCCh
Q 004584 392 VQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSG 439 (744)
Q Consensus 392 ~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg 439 (744)
.+.|++|+.++..+.|.... . . +......++..+.|-.+
T Consensus 161 -~~~~~~~~~~~~~~~L~~~~---~----~-~~~~a~~~~~la~G~~~ 199 (334)
T PRK07993 161 -LHYLAPPPEQYALTWLSREV---T----M-SQDALLAALRLSAGAPG 199 (334)
T ss_pred -cccCCCCCHHHHHHHHHHcc---C----C-CHHHHHHHHHHcCCCHH
Confidence 57999999888777775321 1 1 22235566777776443
No 384
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.67 E-value=1.1e-07 Score=107.43 Aligned_cols=200 Identities=19% Similarity=0.191 Sum_probs=109.8
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHh--cCCCcEEecccc
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPE 290 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l--~~~~~~~v~~~~ 290 (744)
...|++ +.|.+..++++.+.+-... +...+|||+|++||||+++|+++.+.. ...+++.+||..
T Consensus 208 ~~~f~~--iiG~S~~m~~~~~~i~~~A------------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~ 273 (526)
T TIGR02329 208 RYRLDD--LLGASAPMEQVRALVRLYA------------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGA 273 (526)
T ss_pred ccchhh--eeeCCHHHHHHHHHHHHHh------------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEecccc
Confidence 456777 8888888888833322111 234579999999999999999999765 345788899986
Q ss_pred hhccc-----ccchH--------HHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHH
Q 004584 291 VLSKF-----VGETE--------KNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLT 357 (744)
Q Consensus 291 l~~~~-----~g~~~--------~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~ 357 (744)
+-... +|..+ ..-..+|+.|. ...||||||+.|.+ .+...|+.
T Consensus 274 l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~-----------gGTLfLdeI~~Lp~-------------~~Q~~Ll~ 329 (526)
T TIGR02329 274 IAESLLEAELFGYEEGAFTGARRGGRTGLIEAAH-----------RGTLFLDEIGEMPL-------------PLQTRLLR 329 (526)
T ss_pred CChhHHHHHhcCCcccccccccccccccchhhcC-----------CceEEecChHhCCH-------------HHHHHHHH
Confidence 63211 11000 00011222222 23899999999852 23334444
Q ss_pred hccCc-----c----CCCcEEEEEEeCCCC--ccc-----hhhcCCCccceEEEEcCCCHHHHH----HHHHHHHhcccc
Q 004584 358 KIDGV-----E----SLNNVLLIGMTNRKD--MLD-----EALLRPGRLEVQVEISLPDENGRL----QILQIHTNKMKE 417 (744)
Q Consensus 358 ~~d~~-----~----~~~~v~vI~~tn~~~--~id-----~al~r~gRf~~~i~i~~Pd~~~r~----~Il~~~~~~~~~ 417 (744)
.++.- . ...++.+|++|+..- .+. +.|.. |+. .+.+.+|...+|. .++..+++....
T Consensus 330 ~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~ 406 (526)
T TIGR02329 330 VLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLS-ILRIALPPLRERPGDILPLAAEYLVQAAA 406 (526)
T ss_pred HHhcCcEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcC-CcEEeCCCchhchhHHHHHHHHHHHHHHH
Confidence 44321 1 112568999998752 121 12211 332 2456666655554 344455544322
Q ss_pred cCCCC-CcccHHH-------HHHhcCCCChHHHHHHHHHHHHHH
Q 004584 418 NSFLA-PDVNLQE-------LAARTKNYSGAELEGVAKSAVSFA 453 (744)
Q Consensus 418 ~~~~~-~~~~l~~-------la~~t~g~sg~dl~~l~~~A~~~a 453 (744)
...+. .+..+.. |.+..---+-++|++++++++..+
T Consensus 407 ~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 407 ALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALEL 450 (526)
T ss_pred HcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 11111 1111222 434433335689999999887543
No 385
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.67 E-value=6.2e-09 Score=93.13 Aligned_cols=110 Identities=25% Similarity=0.306 Sum_probs=55.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhcCCCcEEeccc-c-----hhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEc
Q 004584 256 GMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGP-E-----VLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFD 329 (744)
Q Consensus 256 giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~-~-----l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iD 329 (744)
|+||+|+||+|||++|+++|+.++ ..+..|.+. + +.+-.+-+.+. ..|+- ...|.. -.|+++|
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~-~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~--~~GPif-----~~ill~D 69 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLG-LSFKRIQFTPDLLPSDILGFPVYDQET---GEFEF--RPGPIF-----TNILLAD 69 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT---EEEEE--TT--HHHHHEEEEEETTT---TEEEE--EE-TT------SSEEEEE
T ss_pred CEeeECCCccHHHHHHHHHHHHcC-CceeEEEecCCCCcccceeeeeeccCC---CeeEe--ecChhh-----hceeeec
Confidence 589999999999999999999985 445545432 2 22211111000 00000 001110 1299999
Q ss_pred CcchhcccCCCCCCCCccHHHHHHHHHHhccC---------ccCCCcEEEEEEeCCCC-----ccchhhcCCCccc
Q 004584 330 EIDAICKSRGSTRDGTGVHDSIVNQLLTKIDG---------VESLNNVLLIGMTNRKD-----MLDEALLRPGRLE 391 (744)
Q Consensus 330 Eid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~---------~~~~~~v~vI~~tn~~~-----~id~al~r~gRf~ 391 (744)
||++..+ ++.+.||+.|.. ..-..+++||||.|+.+ .++++++. ||-
T Consensus 70 EiNrapp-------------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF~ 130 (131)
T PF07726_consen 70 EINRAPP-------------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RFM 130 (131)
T ss_dssp TGGGS-H-------------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TSS
T ss_pred ccccCCH-------------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--ccc
Confidence 9998653 344556666542 12234689999999876 47888877 763
No 386
>PRK08116 hypothetical protein; Validated
Probab=98.66 E-value=1.1e-07 Score=98.86 Aligned_cols=132 Identities=24% Similarity=0.303 Sum_probs=75.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEecccchhcccccc----hHHHHHHHHHHHHhcccccCCCCCeeEEE
Q 004584 254 VKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGE----TEKNIRDLFADAENDQRTRGDQSDLHVII 327 (744)
Q Consensus 254 ~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~~~g~----~~~~i~~~f~~a~~~~~~~~~~~~p~Il~ 327 (744)
..|++|+|+||||||+||.++++.+. +..+.+++.++++..+... ......++++.... ..+|+
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~----------~dlLv 183 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVN----------ADLLI 183 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcC----------CCEEE
Confidence 46899999999999999999999983 4566777877776643211 11112223322221 24999
Q ss_pred EcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCC-Cc----cchhhcCCCcc---ceEEEEcCC
Q 004584 328 FDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRK-DM----LDEALLRPGRL---EVQVEISLP 399 (744)
Q Consensus 328 iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~-~~----id~al~r~gRf---~~~i~i~~P 399 (744)
|||+...- .++.. ...|...++.... .+..+|.|||.+ +. ++.++.+ |+ ...|.+..|
T Consensus 184 iDDlg~e~--------~t~~~---~~~l~~iin~r~~-~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~ 249 (268)
T PRK08116 184 LDDLGAER--------DTEWA---REKVYNIIDSRYR-KGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGK 249 (268)
T ss_pred EecccCCC--------CCHHH---HHHHHHHHHHHHH-CCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCc
Confidence 99996421 11222 2334444443222 234577778775 23 3556665 53 334556555
Q ss_pred CHHHHHHHHHHH
Q 004584 400 DENGRLQILQIH 411 (744)
Q Consensus 400 d~~~r~~Il~~~ 411 (744)
| -|..+.+..
T Consensus 250 d--~R~~~~~ek 259 (268)
T PRK08116 250 S--YRKEIAKEK 259 (268)
T ss_pred C--hhHHHHHHH
Confidence 5 355555433
No 387
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.65 E-value=1.4e-07 Score=106.54 Aligned_cols=198 Identities=19% Similarity=0.225 Sum_probs=109.1
Q ss_pred ccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHH--------h--cCCCc
Q 004584 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKM--------L--NGMEP 283 (744)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~--------l--~~~~~ 283 (744)
..|++ |.|.+..++++. +.+...- +...+|||+|++||||+++|+++.+. . ...++
T Consensus 216 ~~f~~--iiG~S~~m~~~~-~~i~~~A-----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pf 281 (538)
T PRK15424 216 YVLGD--LLGQSPQMEQVR-QTILLYA-----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPF 281 (538)
T ss_pred cchhh--eeeCCHHHHHHH-HHHHHHh-----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCe
Confidence 45777 888888888883 3332111 23457999999999999999999987 2 24578
Q ss_pred EEecccchhccc-----ccchH--------HHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHH
Q 004584 284 KIVNGPEVLSKF-----VGETE--------KNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDS 350 (744)
Q Consensus 284 ~~v~~~~l~~~~-----~g~~~--------~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~ 350 (744)
+.+||..+-... +|..+ ..-..+|+.|. ...||||||+.|.+ .
T Consensus 282 v~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~-----------gGTLfLdeI~~Lp~-------------~ 337 (538)
T PRK15424 282 VAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH-----------GGTLFLDEIGEMPL-------------P 337 (538)
T ss_pred EEeecccCChhhHHHHhcCCccccccCccccccCCchhccC-----------CCEEEEcChHhCCH-------------H
Confidence 889998763211 11000 00011233222 23999999998852 2
Q ss_pred HHHHHHHhccCcc---------CCCcEEEEEEeCCCCccchhhcCCCccce-------EEEEcCCCHHHHHH----HHHH
Q 004584 351 IVNQLLTKIDGVE---------SLNNVLLIGMTNRKDMLDEALLRPGRLEV-------QVEISLPDENGRLQ----ILQI 410 (744)
Q Consensus 351 ~~~~LL~~~d~~~---------~~~~v~vI~~tn~~~~id~al~r~gRf~~-------~i~i~~Pd~~~r~~----Il~~ 410 (744)
+...|+..++.-. -..++.+|++||..- . .+...|+|.. .+.+.+|...+|.+ +++.
T Consensus 338 ~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L--~-~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~ 414 (538)
T PRK15424 338 LQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDL--E-EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAES 414 (538)
T ss_pred HHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCH--H-HHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHH
Confidence 3344444443210 123578999998752 1 1112233321 35666776666543 4444
Q ss_pred HHhcccc--cCCCCCccc------HHHHHHhcCCCChHHHHHHHHHHHHH
Q 004584 411 HTNKMKE--NSFLAPDVN------LQELAARTKNYSGAELEGVAKSAVSF 452 (744)
Q Consensus 411 ~~~~~~~--~~~~~~~~~------l~~la~~t~g~sg~dl~~l~~~A~~~ 452 (744)
++++... +..+.++.- +..|....---+-++|++++++++..
T Consensus 415 fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 415 FLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred HHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 4444211 111221110 12233333333669999999998764
No 388
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.65 E-value=1.9e-06 Score=86.03 Aligned_cols=188 Identities=12% Similarity=0.219 Sum_probs=121.6
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhc-CCC--EEEE-----cccc------------c-c------cccchhhHhhHHH
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDS-DFP--FVKI-----ISAE------------S-M------IGLHESTKCAQIV 584 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~-~~~--~i~v-----~~~~------------~-~------~g~~~~~~~~~i~ 584 (744)
...+|+++|||+|+||-|.+.++-++. |.. =+++ .+|. . + .|.+... -+.
T Consensus 32 ~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRv---ViQ 108 (351)
T KOG2035|consen 32 GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRV---VIQ 108 (351)
T ss_pred CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHH---HHH
Confidence 446899999999999999888876553 211 1111 1111 0 0 3444332 244
Q ss_pred HHHHHHh---------cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCcccc
Q 004584 585 KVFEDAY---------KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGI 655 (744)
Q Consensus 585 ~if~~a~---------~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l 655 (744)
+++++.. +....+++|-|+|.|. ...|.+|...|+.... .+.+|-..|....+-+ .+
T Consensus 109 ellKevAQt~qie~~~qr~fKvvvi~ead~LT----------~dAQ~aLRRTMEkYs~---~~RlIl~cns~SriIe-pI 174 (351)
T KOG2035|consen 109 ELLKEVAQTQQIETQGQRPFKVVVINEADELT----------RDAQHALRRTMEKYSS---NCRLILVCNSTSRIIE-PI 174 (351)
T ss_pred HHHHHHHhhcchhhccccceEEEEEechHhhh----------HHHHHHHHHHHHHHhc---CceEEEEecCcccchh-HH
Confidence 4555443 2356899999999985 6678888888887643 3334444454443433 34
Q ss_pred ccccceEEEcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcch
Q 004584 656 CDAFSVTYHVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKI 731 (744)
Q Consensus 656 ~~rf~~~i~~p~~~~~~~~~Il~~~----~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~ 731 (744)
++| +..+++|.|+++|+-.++... +...+.++..-++.-+++++|+++.++|.+...... .......|..
T Consensus 175 rSR-Cl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~-----~~a~~~~i~~ 248 (351)
T KOG2035|consen 175 RSR-CLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNNEP-----FTANSQVIPK 248 (351)
T ss_pred hhh-eeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhcccc-----ccccCCCCCC
Confidence 444 457899999999998888863 455667888888888999999999999988766321 1112255666
Q ss_pred hhHHHHHHHHh
Q 004584 732 SHFYDCLQDMV 742 (744)
Q Consensus 732 e~~~~al~~~~ 742 (744)
-||...+.++.
T Consensus 249 ~dWe~~i~e~a 259 (351)
T KOG2035|consen 249 PDWEIYIQEIA 259 (351)
T ss_pred ccHHHHHHHHH
Confidence 67777766543
No 389
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.65 E-value=2.2e-07 Score=104.32 Aligned_cols=47 Identities=32% Similarity=0.601 Sum_probs=35.6
Q ss_pred ccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 004584 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKML 278 (744)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l 278 (744)
.+|++ |-|.+..++.+ ..++ ....+++|+||||||||++++.++..+
T Consensus 189 ~d~~d--v~Gq~~~~~al-~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 189 LDLKD--IKGQQHAKRAL-EIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CCHHH--hcCcHHHHhhh-hhhc---------------cCCCEEEEEecCCCCHHHHHHHHhccc
Confidence 46777 88888776655 2221 233579999999999999999999765
No 390
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.65 E-value=1e-07 Score=112.10 Aligned_cols=204 Identities=15% Similarity=0.175 Sum_probs=112.8
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEecccc
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPE 290 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~ 290 (744)
...|++ +.|-+..++++++++.... +...+|||+|++||||+++|+++.+... ..+++.+||..
T Consensus 321 ~~~~~~--l~g~s~~~~~~~~~~~~~a------------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~ 386 (638)
T PRK11388 321 SHTFDH--MPQDSPQMRRLIHFGRQAA------------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQL 386 (638)
T ss_pred cccccc--eEECCHHHHHHHHHHHHHh------------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCC
Confidence 446777 7788888877754433221 2345799999999999999999998763 35788899876
Q ss_pred hhcccccchHHHHHHHHHHHHh----cccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccC--cc-
Q 004584 291 VLSKFVGETEKNIRDLFADAEN----DQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDG--VE- 363 (744)
Q Consensus 291 l~~~~~g~~~~~i~~~f~~a~~----~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~--~~- 363 (744)
+-.. ..-.++|..... ..+..-.......||||||+.+.. .+...|+..++. +.
T Consensus 387 ~~~~------~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~-------------~~Q~~Ll~~l~~~~~~~ 447 (638)
T PRK11388 387 YPDE------ALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSP-------------ELQSALLQVLKTGVITR 447 (638)
T ss_pred CChH------HHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCH-------------HHHHHHHHHHhcCcEEe
Confidence 5321 011123321100 000000011234899999999852 223334444332 11
Q ss_pred --C----CCcEEEEEEeCCCCccchhhcCCCccce-------EEEEcCCCHHHHH----HHHHHHHhccccc---CCCCC
Q 004584 364 --S----LNNVLLIGMTNRKDMLDEALLRPGRLEV-------QVEISLPDENGRL----QILQIHTNKMKEN---SFLAP 423 (744)
Q Consensus 364 --~----~~~v~vI~~tn~~~~id~al~r~gRf~~-------~i~i~~Pd~~~r~----~Il~~~~~~~~~~---~~~~~ 423 (744)
. ..++.+|++|+..- ..+...|+|.. .+.+.+|...+|. .+++.++..+... ..-..
T Consensus 448 ~~~~~~~~~~~riI~~t~~~l---~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s 524 (638)
T PRK11388 448 LDSRRLIPVDVRVIATTTADL---AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKID 524 (638)
T ss_pred CCCCceEEeeEEEEEeccCCH---HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcC
Confidence 1 12578999998742 12222233311 3566667666664 3444444433211 01123
Q ss_pred cccHHHHHHhcCCCChHHHHHHHHHHHHH
Q 004584 424 DVNLQELAARTKNYSGAELEGVAKSAVSF 452 (744)
Q Consensus 424 ~~~l~~la~~t~g~sg~dl~~l~~~A~~~ 452 (744)
+..+..|.+..-.-+-++|+++++.|+..
T Consensus 525 ~~a~~~L~~y~WPGNvreL~~~l~~~~~~ 553 (638)
T PRK11388 525 DDALARLVSYRWPGNDFELRSVIENLALS 553 (638)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHHHh
Confidence 33455666655444779999999987753
No 391
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.64 E-value=1.3e-07 Score=101.59 Aligned_cols=201 Identities=22% Similarity=0.208 Sum_probs=113.8
Q ss_pred ccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhc---CCCcEEecccc
Q 004584 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---GMEPKIVNGPE 290 (744)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~---~~~~~~v~~~~ 290 (744)
..+++ +.|-+...+++.+++-. ++ +...+||++|++||||+++|+++..... ..+++.+||..
T Consensus 75 ~~~~~--LIG~~~~~~~~~eqik~---~a---------p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~ 140 (403)
T COG1221 75 EALDD--LIGESPSLQELREQIKA---YA---------PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAA 140 (403)
T ss_pred hhhhh--hhccCHHHHHHHHHHHh---hC---------CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHH
Confidence 34555 77777777777444332 12 3456899999999999999999985442 34788899987
Q ss_pred hhcc-------------cccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHH
Q 004584 291 VLSK-------------FVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLT 357 (744)
Q Consensus 291 l~~~-------------~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~ 357 (744)
+... |.| ....-.-+|+.|..+ +||+|||..+.+. ....|+.
T Consensus 141 ~~en~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG-----------tLfLDEI~~LP~~-------------~Q~kLl~ 195 (403)
T COG1221 141 YSENLQEAELFGHEKGAFTG-AQGGKAGLFEQANGG-----------TLFLDEIHRLPPE-------------GQEKLLR 195 (403)
T ss_pred hCcCHHHHHHhccccceeec-ccCCcCchheecCCC-----------EEehhhhhhCCHh-------------HHHHHHH
Confidence 7542 222 111223345544433 9999999998532 2334555
Q ss_pred hccC-----cc----CCCcEEEEEEeCCC--Cccch--hhcCCCccceEEEEcCCCHHHHH----HHHHHHHhcc----c
Q 004584 358 KIDG-----VE----SLNNVLLIGMTNRK--DMLDE--ALLRPGRLEVQVEISLPDENGRL----QILQIHTNKM----K 416 (744)
Q Consensus 358 ~~d~-----~~----~~~~v~vI~~tn~~--~~id~--al~r~gRf~~~i~i~~Pd~~~r~----~Il~~~~~~~----~ 416 (744)
.||. +. ...+|.+|+||+.. +.+-. .+.+ -|+... |.+|...+|. .+++..++.+ .
T Consensus 196 ~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~-rl~~~~--I~LPpLrER~~Di~~L~e~Fl~~~~~~l~ 272 (403)
T COG1221 196 VLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTR-RLNILT--ITLPPLRERKEDILLLAEHFLKSEARRLG 272 (403)
T ss_pred HHHcCceEecCCCCCcCCCceeeeccccCHHHHHHhhcchhh-hhcCce--ecCCChhhchhhHHHHHHHHHHHHHHHcC
Confidence 5543 11 22469999998753 22222 2222 044444 4455554443 3344444333 3
Q ss_pred ccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Q 004584 417 ENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNR 456 (744)
Q Consensus 417 ~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r 456 (744)
..........+..|-...---+-++|+++++.++..+...
T Consensus 273 ~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~~~~ 312 (403)
T COG1221 273 LPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQASGE 312 (403)
T ss_pred CCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHhccc
Confidence 2211111112333333332236699999999999877543
No 392
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=9.7e-07 Score=93.31 Aligned_cols=157 Identities=17% Similarity=0.067 Sum_probs=98.9
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhcCCCE---------------EEEcccccc-ccc---chhhHhhHHHHHHHHHh-
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFPF---------------VKIISAESM-IGL---HESTKCAQIVKVFEDAY- 591 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~---------------i~v~~~~~~-~g~---~~~~~~~~i~~if~~a~- 591 (744)
+.+..+||+||.|+||+++|+++|...-+.- -.-+.|+.. +.. ...-+.+.|+++-+.+.
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~ 102 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQE 102 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhh
Confidence 4456789999999999999999986532100 000111211 110 01123456777666553
Q ss_pred ---cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCCC
Q 004584 592 ---KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTL 668 (744)
Q Consensus 592 ---~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~ 668 (744)
.+...|++||++|++. ....++|+..|+..++ ++++|-.|+.++.+-+ -+++| +..+.|++|
T Consensus 103 ~~~~~~~kV~iI~~ae~m~----------~~AaNaLLKtLEEPp~---~t~fiL~t~~~~~lLp-TI~SR-Cq~~~~~~~ 167 (319)
T PRK06090 103 SSQLNGYRLFVIEPADAMN----------ESASNALLKTLEEPAP---NCLFLLVTHNQKRLLP-TIVSR-CQQWVVTPP 167 (319)
T ss_pred CcccCCceEEEecchhhhC----------HHHHHHHHHHhcCCCC---CeEEEEEECChhhChH-HHHhc-ceeEeCCCC
Confidence 3456899999999984 6678889988888643 4566666666665555 35555 458999999
Q ss_pred CHHHHHHHHHHccCCCHHHHHHHHHhCCCCcHHHHHHHH
Q 004584 669 KTDDAKKVLKQLNVFAEEDVDSASEALNDMPIKKLYMLI 707 (744)
Q Consensus 669 ~~~~~~~Il~~~~~~~~~~~~~~~~~~~~g~ir~l~~~l 707 (744)
+.+++.+.|...+.- . ...+..+++|+...++.++
T Consensus 168 ~~~~~~~~L~~~~~~-~---~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 168 STAQAMQWLKGQGIT-V---PAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred CHHHHHHHHHHcCCc-h---HHHHHHHcCCCHHHHHHHh
Confidence 999999999875322 1 1233445556555554443
No 393
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.64 E-value=5.2e-07 Score=94.63 Aligned_cols=74 Identities=23% Similarity=0.208 Sum_probs=43.4
Q ss_pred eeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCC------------CCccchhhcCCCcc
Q 004584 323 LHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNR------------KDMLDEALLRPGRL 390 (744)
Q Consensus 323 p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~------------~~~id~al~r~gRf 390 (744)
|.||||||+|.|- -+.+.-|-..|+. .-.-+||.+||+ |..||..|+. |+
T Consensus 279 pGVLFIDEvHmLD-------------iEcFsfLnralEs---~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLD--Rl 340 (398)
T PF06068_consen 279 PGVLFIDEVHMLD-------------IECFSFLNRALES---ELSPIIILATNRGITKIRGTDIISPHGIPLDLLD--RL 340 (398)
T ss_dssp E-EEEEESGGGSB-------------HHHHHHHHHHHTS---TT--EEEEEES-SEEE-BTTS-EEETT--HHHHT--TE
T ss_pred cceEEecchhhcc-------------HHHHHHHHHHhcC---CCCcEEEEecCceeeeccCccCcCCCCCCcchHh--hc
Confidence 5699999999872 1233333333331 123467777886 4457788887 76
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHhcc
Q 004584 391 EVQVEISLPDENGRLQILQIHTNKM 415 (744)
Q Consensus 391 ~~~i~i~~Pd~~~r~~Il~~~~~~~ 415 (744)
- .|...+++.++..+|++..++.-
T Consensus 341 l-II~t~py~~~ei~~Il~iR~~~E 364 (398)
T PF06068_consen 341 L-IIRTKPYSEEEIKQILKIRAKEE 364 (398)
T ss_dssp E-EEEE----HHHHHHHHHHHHHHC
T ss_pred E-EEECCCCCHHHHHHHHHhhhhhh
Confidence 4 67888999999999999988753
No 394
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.62 E-value=1.5e-06 Score=87.14 Aligned_cols=124 Identities=13% Similarity=0.187 Sum_probs=78.3
Q ss_pred CCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCC--------CCCCccc----cccccce
Q 004584 594 PLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEV--------SFLDSVG----ICDAFSV 661 (744)
Q Consensus 594 ~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~--------~~l~~~~----l~~rf~~ 661 (744)
-|++|||||++.|- -.-...|...|+. .-.. +||-+||+- +.+.|.+ +..|. .
T Consensus 296 vPGVLFIDEVhMLD----------iEcFTyL~kalES---~iaP-ivifAsNrG~~~irGt~d~~sPhGip~dllDRl-~ 360 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLD----------IECFTYLHKALES---PIAP-IVIFASNRGMCTIRGTEDILSPHGIPPDLLDRL-L 360 (456)
T ss_pred cCcceEeeehhhhh----------hHHHHHHHHHhcC---CCCc-eEEEecCCcceeecCCcCCCCCCCCCHHHhhhe-e
Confidence 38899999999873 2233333333332 2233 445566652 2333433 33444 3
Q ss_pred EEEcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHhC-CCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHH
Q 004584 662 TYHVPTLKTDDAKKVLKQL----NVFAEEDVDSASEAL-NDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYD 736 (744)
Q Consensus 662 ~i~~p~~~~~~~~~Il~~~----~~~~~~~~~~~~~~~-~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~ 736 (744)
+|..-+|+.+++++|++.. +...+++...++... +.-++|..+.++--|...++. .|+..|..+|+++
T Consensus 361 Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~-------~g~~~i~v~dvee 433 (456)
T KOG1942|consen 361 IIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKT-------NGRKEISVEDVEE 433 (456)
T ss_pred EEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHH-------cCCceeecccHHH
Confidence 6777889999999999973 233344444444444 488899999998877666554 4788899999988
Q ss_pred HHH
Q 004584 737 CLQ 739 (744)
Q Consensus 737 al~ 739 (744)
+-.
T Consensus 434 ~~~ 436 (456)
T KOG1942|consen 434 VTE 436 (456)
T ss_pred HHH
Confidence 765
No 395
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.60 E-value=3.6e-07 Score=93.08 Aligned_cols=167 Identities=12% Similarity=0.167 Sum_probs=107.0
Q ss_pred CCCCceeeeeecCCCCChhHHHHHHHhhcCCC--EE----EEcccccccccchhhHhhHHHHHHHHHh-------cCCCe
Q 004584 530 KGSPLVTCLLEGPSGSGKTALAATAGIDSDFP--FV----KIISAESMIGLHESTKCAQIVKVFEDAY-------KSPLS 596 (744)
Q Consensus 530 ~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~--~i----~v~~~~~~~g~~~~~~~~~i~~if~~a~-------~~~~~ 596 (744)
+....+|+|+|||||+|||....+.|...-.+ +- .++..+. .|.. ....-...|..++ ..++.
T Consensus 58 ~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~-rgid---~vr~qi~~fast~~~~~fst~~~fK 133 (360)
T KOG0990|consen 58 GMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDD-RGID---PVRQQIHLFASTQQPTTYSTHAAFK 133 (360)
T ss_pred cCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCc-cCCc---chHHHHHHHHhhccceeccccCcee
Confidence 33445599999999999999888888765442 11 1111110 0100 1111223444443 23788
Q ss_pred EEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCCCCHHHHHHH
Q 004584 597 IIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKKV 676 (744)
Q Consensus 597 il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~I 676 (744)
.+++||+|.+. ...|++|...++... .+..|+-..|.+..+.+ .+++||. .++|.+++..+....
T Consensus 134 lvILDEADaMT----------~~AQnALRRviek~t---~n~rF~ii~n~~~ki~p-a~qsRct-rfrf~pl~~~~~~~r 198 (360)
T KOG0990|consen 134 LVILDEADAMT----------RDAQNALRRVIEKYT---ANTRFATISNPPQKIHP-AQQSRCT-RFRFAPLTMAQQTER 198 (360)
T ss_pred EEEecchhHhh----------HHHHHHHHHHHHHhc---cceEEEEeccChhhcCc-hhhcccc-cCCCCCCChhhhhhH
Confidence 99999999974 667777777665542 34555566788888887 4456665 788999986665555
Q ss_pred HHHc----cCCCHHHHHHHHHhCCCCcHHHHHHHHHHHHhccc
Q 004584 677 LKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQ 715 (744)
Q Consensus 677 l~~~----~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a~~~a~ 715 (744)
+.+. ......+........+.|+.|.+++.++.....-.
T Consensus 199 ~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~~ 241 (360)
T KOG0990|consen 199 QSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKVM 241 (360)
T ss_pred HHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhC
Confidence 5553 33444455555777789999999999997765533
No 396
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.59 E-value=6.1e-07 Score=100.24 Aligned_cols=183 Identities=15% Similarity=0.149 Sum_probs=109.2
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhcCC----CEEEEcc------c----------c-----------cccccchhhHhh
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDSDF----PFVKIIS------A----------E-----------SMIGLHESTKCA 581 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~~~----~~i~v~~------~----------~-----------~~~g~~~~~~~~ 581 (744)
...+++|.||||||||++++.++....- ..+.+.. . . .++|... .
T Consensus 209 ~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~----~ 284 (506)
T PRK09862 209 GGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGA----I 284 (506)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCc----e
Confidence 4468999999999999999999864321 0111100 0 0 0111100 0
Q ss_pred HHHHHHHHHhcCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCC----C------CCCcEEEEEeCCCCC--C
Q 004584 582 QIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP----P------KGKKLLVIGTTSEVS--F 649 (744)
Q Consensus 582 ~i~~if~~a~~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~----~------~~~~v~vi~~tn~~~--~ 649 (744)
.-...+..|.. .+|||||++.+ +..+++.|+..|+.-. . ...++.+|+|+|... .
T Consensus 285 ~~pG~l~~A~g---GvLfLDEi~e~----------~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~ 351 (506)
T PRK09862 285 PGPGEISLAHN---GVLFLDELPEF----------ERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGH 351 (506)
T ss_pred ehhhHhhhccC---CEEecCCchhC----------CHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCcccee
Confidence 01134444443 79999999875 4677888888775422 1 123689999999753 1
Q ss_pred CC------------------ccccccccceEEEcCCCCHHHHHH----------HHHH---------------ccCCCHH
Q 004584 650 LD------------------SVGICDAFSVTYHVPTLKTDDAKK----------VLKQ---------------LNVFAEE 686 (744)
Q Consensus 650 l~------------------~~~l~~rf~~~i~~p~~~~~~~~~----------Il~~---------------~~~~~~~ 686 (744)
.+ +..+.+||+..+.+++++.+++.. |-++ .......
T Consensus 352 ~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~ 431 (506)
T PRK09862 352 YQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSP 431 (506)
T ss_pred cCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHH
Confidence 11 114558999999999885332211 1111 0111222
Q ss_pred HHHHHH----------Hh---CCCCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHH
Q 004584 687 DVDSAS----------EA---LNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 739 (744)
Q Consensus 687 ~~~~~~----------~~---~~~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~ 739 (744)
++.+.| .. ..+.+.|....+++.|...|.- +|++.|+.+|+.+|+.
T Consensus 432 ~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL-------~g~~~V~~~hv~eAl~ 490 (506)
T PRK09862 432 EIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADI-------DQSDIITRQHLQEAVS 490 (506)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-------cCCCCCCHHHHHHHHH
Confidence 222221 11 1166788888888888887653 5899999999999986
No 397
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.59 E-value=1.7e-06 Score=92.44 Aligned_cols=206 Identities=18% Similarity=0.243 Sum_probs=130.1
Q ss_pred CcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhc----CCCcEEecccchhc--
Q 004584 220 GIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN----GMEPKIVNGPEVLS-- 293 (744)
Q Consensus 220 ~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~----~~~~~~v~~~~l~~-- 293 (744)
++.|-+.+...+ ++++...+ ..+.+..+.+.|.||||||.+...+...+. .....++||.++..
T Consensus 151 ~l~gRe~e~~~v-~~F~~~hl---------e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 151 TLKGRELEMDIV-REFFSLHL---------ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CccchHHHHHHH-HHHHHhhh---------hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 488888888777 66664333 346677899999999999999887765552 11335677765322
Q ss_pred --------cc----c-cchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhcc
Q 004584 294 --------KF----V-GETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKID 360 (744)
Q Consensus 294 --------~~----~-g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d 360 (744)
.+ . +-++......|..-.... ..+-++++||+|.|+.+... ++..|.. +.
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~------k~~~llVlDEmD~L~tr~~~----------vLy~lFe-wp 283 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQS------KFMLLLVLDEMDHLITRSQT----------VLYTLFE-WP 283 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcc------cceEEEEechhhHHhhcccc----------eeeeehh-cc
Confidence 11 1 111222333443332221 13679999999999844321 2222211 12
Q ss_pred CccCCCcEEEEEEeCCCCccchhhcC----CCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCC
Q 004584 361 GVESLNNVLLIGMTNRKDMLDEALLR----PGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKN 436 (744)
Q Consensus 361 ~~~~~~~v~vI~~tn~~~~id~al~r----~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g 436 (744)
. ....++++||.+|..++-|..|-| .+--...+.|++++.++..+||+..+...... ...+..++..|+...+
T Consensus 284 ~-lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~--~~~~~Aie~~ArKvaa 360 (529)
T KOG2227|consen 284 K-LPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTS--IFLNAAIELCARKVAA 360 (529)
T ss_pred c-CCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccccc--ccchHHHHHHHHHhcc
Confidence 1 234579999999999876654432 23344578999999999999999888776532 1223457788888888
Q ss_pred CCh--HHHHHHHHHHHHHHHH
Q 004584 437 YSG--AELEGVAKSAVSFALN 455 (744)
Q Consensus 437 ~sg--~dl~~l~~~A~~~a~~ 455 (744)
-+| +.+-.+|+.|...+-.
T Consensus 361 ~SGDlRkaLdv~R~aiEI~E~ 381 (529)
T KOG2227|consen 361 PSGDLRKALDVCRRAIEIAEI 381 (529)
T ss_pred CchhHHHHHHHHHHHHHHHHH
Confidence 777 3344578888776654
No 398
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.56 E-value=1.1e-07 Score=91.41 Aligned_cols=100 Identities=24% Similarity=0.346 Sum_probs=60.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEecccchhcc-----cccchH-------HHHHHHHHHHHhcccccCC
Q 004584 254 VKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSK-----FVGETE-------KNIRDLFADAENDQRTRGD 319 (744)
Q Consensus 254 ~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~-----~~g~~~-------~~i~~~f~~a~~~~~~~~~ 319 (744)
+.+|||+|++||||+++|+++.+... ..+++.+||..+-.. .+|... ..-..+|+.|...
T Consensus 22 ~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~G------ 95 (168)
T PF00158_consen 22 DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGG------ 95 (168)
T ss_dssp TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTS------
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccce------
Confidence 46899999999999999999998653 357888999766322 112110 0112355555443
Q ss_pred CCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccC-----ccC----CCcEEEEEEeCCC
Q 004584 320 QSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDG-----VES----LNNVLLIGMTNRK 377 (744)
Q Consensus 320 ~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~-----~~~----~~~v~vI~~tn~~ 377 (744)
+||||||+.|.+ .+...|+..++. +.. ..++.+|++|+..
T Consensus 96 -----tL~Ld~I~~L~~-------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 96 -----TLFLDEIEDLPP-------------ELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp -----EEEEETGGGS-H-------------HHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred -----EEeecchhhhHH-------------HHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 999999999853 233334444331 111 2379999999874
No 399
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=1.2e-06 Score=92.72 Aligned_cols=136 Identities=21% Similarity=0.246 Sum_probs=94.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEe--------------cccchhcccc---c--chHHHHHHHHHHHHhc
Q 004584 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIV--------------NGPEVLSKFV---G--ETEKNIRDLFADAEND 313 (744)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v--------------~~~~l~~~~~---g--~~~~~i~~~f~~a~~~ 313 (744)
.+..+||+||.|+||+++|+++|+.+.+...... +-+++..-.. | -....+|++-+.+...
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~ 103 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQES 103 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhC
Confidence 3457999999999999999999999854321100 1122211111 1 1234566665444332
Q ss_pred ccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceE
Q 004584 314 QRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQ 393 (744)
Q Consensus 314 ~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~ 393 (744)
+.. ++..|++||++|.+. ....|.||+.++ ++..++++|..|+.++.+-|.+++ |+. .
T Consensus 104 -~~~---~~~kV~iI~~ae~m~-------------~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTI~S--RCq-~ 161 (319)
T PRK06090 104 -SQL---NGYRLFVIEPADAMN-------------ESASNALLKTLE--EPAPNCLFLLVTHNQKRLLPTIVS--RCQ-Q 161 (319)
T ss_pred -ccc---CCceEEEecchhhhC-------------HHHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--cce-e
Confidence 221 224599999999884 356688999998 466789999999999999999999 765 7
Q ss_pred EEEcCCCHHHHHHHHHH
Q 004584 394 VEISLPDENGRLQILQI 410 (744)
Q Consensus 394 i~i~~Pd~~~r~~Il~~ 410 (744)
+.|+.|+.++..+.|..
T Consensus 162 ~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 162 WVVTPPSTAQAMQWLKG 178 (319)
T ss_pred EeCCCCCHHHHHHHHHH
Confidence 89999999988887753
No 400
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.56 E-value=2.9e-07 Score=88.27 Aligned_cols=119 Identities=24% Similarity=0.268 Sum_probs=73.1
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhcCC-----------------------CEEEEcccccccccchhhHhhHHHHHHH
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDSDF-----------------------PFVKIISAESMIGLHESTKCAQIVKVFE 588 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~~~-----------------------~~i~v~~~~~~~g~~~~~~~~~i~~if~ 588 (744)
.-+..+||+||+|+||+++|.++|...-. ++..+..... ...-+.+.++++.+
T Consensus 17 ~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~----~~~i~i~~ir~i~~ 92 (162)
T PF13177_consen 17 RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK----KKSIKIDQIREIIE 92 (162)
T ss_dssp C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS----SSSBSHHHHHHHHH
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc----cchhhHHHHHHHHH
Confidence 33455899999999999999999965321 1222211110 00113456777777
Q ss_pred HHh----cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEE
Q 004584 589 DAY----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYH 664 (744)
Q Consensus 589 ~a~----~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~ 664 (744)
.+. .+...|++|||+|.|. ...+++|+..|+..+. .+.+|-+|+.++.+-+ .+++| +..++
T Consensus 93 ~~~~~~~~~~~KviiI~~ad~l~----------~~a~NaLLK~LEepp~---~~~fiL~t~~~~~il~-TI~SR-c~~i~ 157 (162)
T PF13177_consen 93 FLSLSPSEGKYKVIIIDEADKLT----------EEAQNALLKTLEEPPE---NTYFILITNNPSKILP-TIRSR-CQVIR 157 (162)
T ss_dssp HCTSS-TTSSSEEEEEETGGGS-----------HHHHHHHHHHHHSTTT---TEEEEEEES-GGGS-H-HHHTT-SEEEE
T ss_pred HHHHHHhcCCceEEEeehHhhhh----------HHHHHHHHHHhcCCCC---CEEEEEEECChHHChH-HHHhh-ceEEe
Confidence 764 3457899999999984 7889999999998653 5566666666665555 34445 45788
Q ss_pred cCCCC
Q 004584 665 VPTLK 669 (744)
Q Consensus 665 ~p~~~ 669 (744)
|++++
T Consensus 158 ~~~ls 162 (162)
T PF13177_consen 158 FRPLS 162 (162)
T ss_dssp E----
T ss_pred cCCCC
Confidence 88764
No 401
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.55 E-value=7.5e-07 Score=90.66 Aligned_cols=182 Identities=18% Similarity=0.268 Sum_probs=97.5
Q ss_pred chHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCC---CcEEecccchhc----c-
Q 004584 223 GLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGM---EPKIVNGPEVLS----K- 294 (744)
Q Consensus 223 Gl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~---~~~~v~~~~l~~----~- 294 (744)
|-++++++| .+.+.. .+...++|+||.|+|||++++.+.+.+... .++......... .
T Consensus 3 gR~~el~~l-~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 3 GREKELEKL-KELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp S-HHHHHHH-HHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CHHHHHHHH-HHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 567777777 443321 234579999999999999999999988421 111111000000 0
Q ss_pred -----------------------------cccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhc-ccCCCCCCC
Q 004584 295 -----------------------------FVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAIC-KSRGSTRDG 344 (744)
Q Consensus 295 -----------------------------~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~-~~~~~~~~~ 344 (744)
........+..+++....... ..||+|||++.+. ...
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-------~~iiviDe~~~~~~~~~------ 135 (234)
T PF01637_consen 69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGK-------KVIIVIDEFQYLAIASE------ 135 (234)
T ss_dssp HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHC-------CEEEEEETGGGGGBCTT------
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCC-------cEEEEEecHHHHhhccc------
Confidence 001223445556655554432 2699999999997 211
Q ss_pred CccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccc------hhhcCCCccceEEEEcCCCHHHHHHHHHHHHhccccc
Q 004584 345 TGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLD------EALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKEN 418 (744)
Q Consensus 345 ~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id------~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~ 418 (744)
....++..|...++......++.+|.++....... ..+ -+|+.. +.+++.+.++..++++...+.. .+
T Consensus 136 --~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~--~~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~ 209 (234)
T PF01637_consen 136 --EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPL--FGRFSH-IELKPLSKEEAREFLKELFKEL-IK 209 (234)
T ss_dssp --TTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTT--TT---E-EEE----HHHHHHHHHHHHHCC---
T ss_pred --chHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCcc--ccccce-EEEeeCCHHHHHHHHHHHHHHh-hc
Confidence 12455666666666544455666665555432221 222 347776 9999999999999999887765 21
Q ss_pred CCCCCcccHHHHHHhcCCCC
Q 004584 419 SFLAPDVNLQELAARTKNYS 438 (744)
Q Consensus 419 ~~~~~~~~l~~la~~t~g~s 438 (744)
. ..++.+++.+...+.|..
T Consensus 210 ~-~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 210 L-PFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp -----HHHHHHHHHHHTT-H
T ss_pred c-cCCHHHHHHHHHHhCCCH
Confidence 1 136677889999998843
No 402
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.53 E-value=1.2e-06 Score=97.90 Aligned_cols=123 Identities=25% Similarity=0.387 Sum_probs=73.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhcCCCc-EEecccchh------------------cccccchHHH--------HHH
Q 004584 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEP-KIVNGPEVL------------------SKFVGETEKN--------IRD 305 (744)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~la~~l~~~~~-~~v~~~~l~------------------~~~~g~~~~~--------i~~ 305 (744)
...+++|+||||||||++++.++..+..... ..+.+..+. +.....+... -..
T Consensus 209 ~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG 288 (506)
T PRK09862 209 GGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPG 288 (506)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhh
Confidence 3467999999999999999999976631110 011111111 1111111110 011
Q ss_pred HHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCc-----------cCCCcEEEEEEe
Q 004584 306 LFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV-----------ESLNNVLLIGMT 374 (744)
Q Consensus 306 ~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~-----------~~~~~v~vI~~t 374 (744)
.+..|.. .+||+||++.+- ..++..|+..|+.- ....++.+|+++
T Consensus 289 ~l~~A~g-----------GvLfLDEi~e~~-------------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~ 344 (506)
T PRK09862 289 EISLAHN-----------GVLFLDELPEFE-------------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAM 344 (506)
T ss_pred HhhhccC-----------CEEecCCchhCC-------------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEee
Confidence 2333332 299999998753 34555566555321 123478999999
Q ss_pred CCCC---------------------ccchhhcCCCccceEEEEcCCCH
Q 004584 375 NRKD---------------------MLDEALLRPGRLEVQVEISLPDE 401 (744)
Q Consensus 375 n~~~---------------------~id~al~r~gRf~~~i~i~~Pd~ 401 (744)
|... .++.+++. ||+.+++++.|+.
T Consensus 345 NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~ 390 (506)
T PRK09862 345 NPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPP 390 (506)
T ss_pred cCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCH
Confidence 9853 36778888 9999999998854
No 403
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.52 E-value=8.2e-07 Score=94.47 Aligned_cols=169 Identities=25% Similarity=0.371 Sum_probs=106.1
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecc----
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNG---- 288 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~---- 288 (744)
.+.|.- |.|.|.....+...++ .| .-.|+|+-|+.|||||+++|+++..|....+.. .|
T Consensus 13 ~~pf~a--ivGqd~lk~aL~l~av-----~P---------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~-gc~f~c 75 (423)
T COG1239 13 NLPFTA--IVGQDPLKLALGLNAV-----DP---------QIGGALIAGEKGTAKSTLARALADLLPEIEVVI-GCPFNC 75 (423)
T ss_pred ccchhh--hcCchHHHHHHhhhhc-----cc---------ccceeEEecCCCccHHHHHHHHHHhCCccceec-CCCCCC
Confidence 566777 9999987665543322 22 236899999999999999999999985332221 11
Q ss_pred ---------cchhcc-------------------cccchHHH------HHHHHHH-HHhcccccCCCCCeeEEEEcCcch
Q 004584 289 ---------PEVLSK-------------------FVGETEKN------IRDLFAD-AENDQRTRGDQSDLHVIIFDEIDA 333 (744)
Q Consensus 289 ---------~~l~~~-------------------~~g~~~~~------i~~~f~~-a~~~~~~~~~~~~p~Il~iDEid~ 333 (744)
.++..+ =.|.++.+ +.+..+. -+..+|..-.....-|++|||+..
T Consensus 76 dP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnl 155 (423)
T COG1239 76 DPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNL 155 (423)
T ss_pred CCCChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccc
Confidence 111111 12333331 1111111 001111111111223999999998
Q ss_pred hcccCCCCCCCCccHHHHHHHHHHhccC-----------ccCCCcEEEEEEeCCCC-ccchhhcCCCccceEEEEcCC-C
Q 004584 334 ICKSRGSTRDGTGVHDSIVNQLLTKIDG-----------VESLNNVLLIGMTNRKD-MLDEALLRPGRLEVQVEISLP-D 400 (744)
Q Consensus 334 l~~~~~~~~~~~~~~~~~~~~LL~~~d~-----------~~~~~~v~vI~~tn~~~-~id~al~r~gRf~~~i~i~~P-d 400 (744)
|. +.+++.||+.+.. +....++++|||+|+-+ .|-|.|+. ||...+.+..| +
T Consensus 156 L~-------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~ 220 (423)
T COG1239 156 LD-------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLD 220 (423)
T ss_pred cc-------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCC
Confidence 73 5677777776642 23345799999999964 47888888 99999999877 5
Q ss_pred HHHHHHHHHHHHh
Q 004584 401 ENGRLQILQIHTN 413 (744)
Q Consensus 401 ~~~r~~Il~~~~~ 413 (744)
.++|.+|.+..+.
T Consensus 221 ~~~rv~Ii~r~~~ 233 (423)
T COG1239 221 LEERVEIIRRRLA 233 (423)
T ss_pred HHHHHHHHHHHHH
Confidence 7889999987654
No 404
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=6.9e-07 Score=95.26 Aligned_cols=137 Identities=20% Similarity=0.288 Sum_probs=92.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE--ecc--------------cchhccc-------cc-----chHHHH
Q 004584 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI--VNG--------------PEVLSKF-------VG-----ETEKNI 303 (744)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~--v~~--------------~~l~~~~-------~g-----~~~~~i 303 (744)
+.+..+||+||+|+|||++|+.+|+.+.+..... ..| +++..-. .| -.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 4566899999999999999999999986432100 001 2221100 01 134567
Q ss_pred HHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchh
Q 004584 304 RDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEA 383 (744)
Q Consensus 304 ~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~a 383 (744)
|++.+.+... |..+ ...|++||+++.+- ....+.|++.++... .++.+|.+|+.++.+.+.
T Consensus 99 R~l~~~~~~~-p~~~---~~kV~iiEp~~~Ld-------------~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~t 159 (325)
T PRK08699 99 REIIDNVYLT-SVRG---GLRVILIHPAESMN-------------LQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPT 159 (325)
T ss_pred HHHHHHHhhC-cccC---CceEEEEechhhCC-------------HHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHH
Confidence 8877666543 2222 24599999999874 345566777777543 356677799999999999
Q ss_pred hcCCCccceEEEEcCCCHHHHHHHHHH
Q 004584 384 LLRPGRLEVQVEISLPDENGRLQILQI 410 (744)
Q Consensus 384 l~r~gRf~~~i~i~~Pd~~~r~~Il~~ 410 (744)
+++ |+. .+.|++|+.++..+.|+.
T Consensus 160 i~S--Rc~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 160 IKS--RCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHH--Hhh-hhcCCCCCHHHHHHHHHh
Confidence 998 654 688999999988777753
No 405
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.49 E-value=9.1e-07 Score=96.78 Aligned_cols=194 Identities=25% Similarity=0.320 Sum_probs=111.4
Q ss_pred cCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEecccchhcc----
Q 004584 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSK---- 294 (744)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~---- 294 (744)
+.|-....+++ ++.+...- +..-+||++|++||||-++||+|.+... ..+|+.+||..+-..
T Consensus 143 liG~S~am~~l-~~~i~kvA-----------~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ES 210 (464)
T COG2204 143 LVGESPAMQQL-RRLIAKVA-----------PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLES 210 (464)
T ss_pred ceecCHHHHHH-HHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHH
Confidence 88888888888 44332211 2345799999999999999999998763 348888998765432
Q ss_pred -ccc--------chHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhcc-----
Q 004584 295 -FVG--------ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKID----- 360 (744)
Q Consensus 295 -~~g--------~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d----- 360 (744)
.+| ...+ -.-.|+.|.. ..||+|||..+.. .+...||..++
T Consensus 211 ELFGhekGAFTGA~~~-r~G~fE~A~G-----------GTLfLDEI~~mpl-------------~~Q~kLLRvLqe~~~~ 265 (464)
T COG2204 211 ELFGHEKGAFTGAITR-RIGRFEQANG-----------GTLFLDEIGEMPL-------------ELQVKLLRVLQEREFE 265 (464)
T ss_pred HhhcccccCcCCcccc-cCcceeEcCC-----------ceEEeeccccCCH-------------HHHHHHHHHHHcCeeE
Confidence 111 1111 1123444433 2999999998742 23333444443
Q ss_pred CccC----CCcEEEEEEeCCCCccchhhcCCC--------ccceEEEEcCCCHHHHHH----HHHHHHhcccccC-CCCC
Q 004584 361 GVES----LNNVLLIGMTNRKDMLDEALLRPG--------RLEVQVEISLPDENGRLQ----ILQIHTNKMKENS-FLAP 423 (744)
Q Consensus 361 ~~~~----~~~v~vI~~tn~~~~id~al~r~g--------Rf~~~i~i~~Pd~~~r~~----Il~~~~~~~~~~~-~~~~ 423 (744)
.+-. .-+|.||++||+. +.... ..| |+. ++.+..|...+|.+ +++.+++++.... .-..
T Consensus 266 rvG~~~~i~vdvRiIaaT~~d--L~~~v-~~G~FReDLyyRLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~ 341 (464)
T COG2204 266 RVGGNKPIKVDVRIIAATNRD--LEEEV-AAGRFREDLYYRLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPK 341 (464)
T ss_pred ecCCCcccceeeEEEeecCcC--HHHHH-HcCCcHHHHHhhhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCCCC
Confidence 1211 2269999999984 21111 123 333 46777787766654 3344444432211 1122
Q ss_pred cccHHHHHHhc-CCC--ChHHHHHHHHHHHHHHHH
Q 004584 424 DVNLQELAART-KNY--SGAELEGVAKSAVSFALN 455 (744)
Q Consensus 424 ~~~l~~la~~t-~g~--sg~dl~~l~~~A~~~a~~ 455 (744)
...-+.+.... +.| +-++|+++++.++..+-.
T Consensus 342 ~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~~~ 376 (464)
T COG2204 342 GFSPEALAALLAYDWPGNVRELENVVERAVILSEG 376 (464)
T ss_pred CCCHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCc
Confidence 33333333322 234 558999999998865543
No 406
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.48 E-value=2.2e-06 Score=91.24 Aligned_cols=75 Identities=15% Similarity=0.248 Sum_probs=54.4
Q ss_pred CCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccC----C------CCCCcEEEEEeCCCCC-CCCccccccccceE
Q 004584 594 PLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRL----P------PKGKKLLVIGTTSEVS-FLDSVGICDAFSVT 662 (744)
Q Consensus 594 ~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~----~------~~~~~v~vi~~tn~~~-~l~~~~l~~rf~~~ 662 (744)
..+|+++||+..|. +.++..||..+..- . ...-++++|||+|..+ -|-+ .|..||...
T Consensus 144 nRGIlYvDEvnlL~----------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrp-qLlDRfg~~ 212 (423)
T COG1239 144 NRGILYVDEVNLLD----------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRP-QLLDRFGLE 212 (423)
T ss_pred cCCEEEEecccccc----------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccch-hhHhhhcce
Confidence 34899999999885 55667777665441 1 1234789999999764 4444 677999999
Q ss_pred EEcCCCC-HHHHHHHHHH
Q 004584 663 YHVPTLK-TDDAKKVLKQ 679 (744)
Q Consensus 663 i~~p~~~-~~~~~~Il~~ 679 (744)
+.+-.+. .+++..|.++
T Consensus 213 v~~~~~~~~~~rv~Ii~r 230 (423)
T COG1239 213 VDTHYPLDLEERVEIIRR 230 (423)
T ss_pred eeccCCCCHHHHHHHHHH
Confidence 9887766 7777777776
No 407
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.48 E-value=3.1e-06 Score=95.75 Aligned_cols=83 Identities=16% Similarity=0.085 Sum_probs=53.3
Q ss_pred HHHhcCCCCceeeeeecCCCCChhHHHHHHHhh---cCCCEEEEccccc---c------cccch----------------
Q 004584 525 QVKVSKGSPLVTCLLEGPSGSGKTALAATAGID---SDFPFVKIISAES---M------IGLHE---------------- 576 (744)
Q Consensus 525 ~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~---~~~~~i~v~~~~~---~------~g~~~---------------- 576 (744)
.+...+..+...+|+.||||+|||+++..++.. .+-+.+.+..-+. + +|...
T Consensus 254 ~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p 333 (484)
T TIGR02655 254 EMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYP 333 (484)
T ss_pred HHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEccc
Confidence 334456677788999999999999999887753 2445555432221 1 12110
Q ss_pred --hhHhhHHHHHHHHHhcCCCeEEEEeccchhh
Q 004584 577 --STKCAQIVKVFEDAYKSPLSIIILDDIERLL 607 (744)
Q Consensus 577 --~~~~~~i~~if~~a~~~~~~il~iDEid~l~ 607 (744)
......+..+.+......+.+|+||-+..+.
T Consensus 334 ~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 334 ESAGLEDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred ccCChHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 0113355666667766778999999998775
No 408
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.46 E-value=2.6e-07 Score=86.23 Aligned_cols=109 Identities=27% Similarity=0.370 Sum_probs=66.2
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhcCC---CEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhhcc
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDSDF---PFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEY 609 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~~~---~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~ 609 (744)
...+|||+|++||||+++|++++..++. +|+.+++...- .++++.+ ..+.|||+|+|.|.
T Consensus 20 ~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~------------~~~l~~a---~~gtL~l~~i~~L~-- 82 (138)
T PF14532_consen 20 SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP------------AELLEQA---KGGTLYLKNIDRLS-- 82 (138)
T ss_dssp SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC------------HHHHHHC---TTSEEEEECGCCS---
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc------------HHHHHHc---CCCEEEECChHHCC--
Confidence 3467999999999999999999987653 45544444321 3455554 45789999999984
Q ss_pred CCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCC--CCCCccc----cccccc-eEEEcCCC
Q 004584 610 VPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEV--SFLDSVG----ICDAFS-VTYHVPTL 668 (744)
Q Consensus 610 ~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~--~~l~~~~----l~~rf~-~~i~~p~~ 668 (744)
...+..|+..++..+. .++.+|++++.+ +.+.... +..++. ..|++||+
T Consensus 83 --------~~~Q~~L~~~l~~~~~--~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i~lPpL 138 (138)
T PF14532_consen 83 --------PEAQRRLLDLLKRQER--SNVRLIASSSQDLEELVEEGRFSPDLYYRLSQLEIHLPPL 138 (138)
T ss_dssp --------HHHHHHHHHHHHHCTT--TTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTCEEEE---
T ss_pred --------HHHHHHHHHHHHhcCC--CCeEEEEEeCCCHHHHhhccchhHHHHHHhCCCEEeCCCC
Confidence 6778888888876543 344555555432 2222211 223333 67888875
No 409
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.46 E-value=8.8e-06 Score=88.60 Aligned_cols=188 Identities=13% Similarity=0.112 Sum_probs=100.4
Q ss_pred cchhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEccccc------c------cccchh
Q 004584 510 DRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES------M------IGLHES 577 (744)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~------~------~g~~~~ 577 (744)
..+.++.+|++. +..+ .+.....-+||+||+||||||..+.++++.+..++.-..|-. + .+....
T Consensus 89 kKI~eVk~WL~~-~~~~--~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~ 165 (634)
T KOG1970|consen 89 KKISEVKQWLKQ-VAEF--TPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQ 165 (634)
T ss_pred HhHHHHHHHHHH-HHHh--ccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchh
Confidence 345666777762 2222 122334568999999999999999999999887766543321 1 111111
Q ss_pred hHhhHHHHHHHHHh------------cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCC
Q 004584 578 TKCAQIVKVFEDAY------------KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTS 645 (744)
Q Consensus 578 ~~~~~i~~if~~a~------------~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn 645 (744)
............+. ...+.+|++||+=..+... ....++.+|.++-... ... +||+.|+
T Consensus 166 s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d------~~~~f~evL~~y~s~g--~~P-lIf~iTd 236 (634)
T KOG1970|consen 166 SQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD------DSETFREVLRLYVSIG--RCP-LIFIITD 236 (634)
T ss_pred hHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh------hHHHHHHHHHHHHhcC--CCc-EEEEEec
Confidence 11111111222221 2345689999996655211 2233333333333221 122 4444443
Q ss_pred C--CCCCCccc-------cccccceEEEcCCCCHHHHHHHHHHc----c-CCC------HHHHHHHHHhCCCCcHHHHHH
Q 004584 646 E--VSFLDSVG-------ICDAFSVTYHVPTLKTDDAKKVLKQL----N-VFA------EEDVDSASEALNDMPIKKLYM 705 (744)
Q Consensus 646 ~--~~~l~~~~-------l~~rf~~~i~~p~~~~~~~~~Il~~~----~-~~~------~~~~~~~~~~~~~g~ir~l~~ 705 (744)
. ++..++.. ..-|. ..|.|.|....-+++.|++. . ... ..++.. +...++||||.+++
T Consensus 237 ~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~-i~~~s~GDIRsAIn 314 (634)
T KOG1970|consen 237 SLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVEL-ICQGSGGDIRSAIN 314 (634)
T ss_pred cccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHH-HHHhcCccHHHHHh
Confidence 2 22222211 11233 47899999966666666652 1 122 334444 44457999999999
Q ss_pred HHHHHH
Q 004584 706 LIEMAA 711 (744)
Q Consensus 706 ~l~~a~ 711 (744)
.|++-.
T Consensus 315 sLQlss 320 (634)
T KOG1970|consen 315 SLQLSS 320 (634)
T ss_pred Hhhhhc
Confidence 999984
No 410
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=2.3e-06 Score=91.25 Aligned_cols=134 Identities=19% Similarity=0.254 Sum_probs=89.0
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhcCC-------------------------CEEEEccccc---ccccc-hhhHhhH
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDSDF-------------------------PFVKIISAES---MIGLH-ESTKCAQ 582 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~~~-------------------------~~i~v~~~~~---~~g~~-~~~~~~~ 582 (744)
..+..+||+||+|+|||++|+.+|....+ .|+.+ .|+. --|.. ..-+.+.
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~-~p~~~~~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEI-TPLSDEPENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEE-ecccccccccccCCCcCHHH
Confidence 55567899999999999999999976421 12222 1110 00100 0124567
Q ss_pred HHHHHHHHhc----CCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccc
Q 004584 583 IVKVFEDAYK----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDA 658 (744)
Q Consensus 583 i~~if~~a~~----~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~r 658 (744)
|+++.+.+.. +...|+++|+++.|- ....+.|+..|+..+. ...+|.+|..++.+.+ .++ +
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld----------~~a~naLLk~LEep~~---~~~~Ilvth~~~~ll~-ti~-S 162 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMN----------LQAANSLLKVLEEPPP---QVVFLLVSHAADKVLP-TIK-S 162 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCC----------HHHHHHHHHHHHhCcC---CCEEEEEeCChHhChH-HHH-H
Confidence 8888777753 456799999999984 5677778888887642 2445557777665555 333 4
Q ss_pred cceEEEcCCCCHHHHHHHHHHcc
Q 004584 659 FSVTYHVPTLKTDDAKKVLKQLN 681 (744)
Q Consensus 659 f~~~i~~p~~~~~~~~~Il~~~~ 681 (744)
++..+.|++++.++....|.+.+
T Consensus 163 Rc~~~~~~~~~~~~~~~~L~~~~ 185 (325)
T PRK08699 163 RCRKMVLPAPSHEEALAYLRERG 185 (325)
T ss_pred HhhhhcCCCCCHHHHHHHHHhcC
Confidence 45689999999999988887653
No 411
>PRK12377 putative replication protein; Provisional
Probab=98.44 E-value=4.9e-07 Score=92.29 Aligned_cols=102 Identities=23% Similarity=0.365 Sum_probs=61.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEecccchhcccccch--HHHHHHHHHHHHhcccccCCCCCeeEEEEc
Q 004584 254 VKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGET--EKNIRDLFADAENDQRTRGDQSDLHVIIFD 329 (744)
Q Consensus 254 ~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~~~g~~--~~~i~~~f~~a~~~~~~~~~~~~p~Il~iD 329 (744)
..+++|+||||||||+||.++++.+. +..+.+++.++++....... .....++++... ...+|+||
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~----------~~dLLiID 170 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELC----------KVDLLVLD 170 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhc----------CCCEEEEc
Confidence 36899999999999999999999983 44566677777665332110 001112232222 24599999
Q ss_pred CcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCC
Q 004584 330 EIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRK 377 (744)
Q Consensus 330 Eid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~ 377 (744)
|+..... +.....++.++++. .......+|.+||..
T Consensus 171 Dlg~~~~--------s~~~~~~l~~ii~~----R~~~~~ptiitSNl~ 206 (248)
T PRK12377 171 EIGIQRE--------TKNEQVVLNQIIDR----RTASMRSVGMLTNLN 206 (248)
T ss_pred CCCCCCC--------CHHHHHHHHHHHHH----HHhcCCCEEEEcCCC
Confidence 9976531 12344555555544 222334567788874
No 412
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.42 E-value=1.5e-06 Score=93.64 Aligned_cols=213 Identities=24% Similarity=0.291 Sum_probs=118.2
Q ss_pred CcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEecccchhccccc
Q 004584 220 GIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVG 297 (744)
Q Consensus 220 ~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~~~g 297 (744)
||-|......+++. .++..- +....|||.|.+||||-.+||+|.+... ..+++.+||+.+-....
T Consensus 224 ~iIG~S~am~~ll~-~i~~VA-----------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLl- 290 (550)
T COG3604 224 GIIGRSPAMRQLLK-EIEVVA-----------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLL- 290 (550)
T ss_pred cceecCHHHHHHHH-HHHHHh-----------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHH-
Confidence 58999988888843 332221 3345799999999999999999998763 45888899986654211
Q ss_pred chH--HHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHh-ccCccCC----CcEEE
Q 004584 298 ETE--KNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTK-IDGVESL----NNVLL 370 (744)
Q Consensus 298 ~~~--~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~-~d~~~~~----~~v~v 370 (744)
++| ...+-.|.-|....+.+.......-||+|||-.|.. .....++..|.+. ++.+-.. -+|.|
T Consensus 291 ESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL---------~lQaKLLRvLQegEieRvG~~r~ikVDVRi 361 (550)
T COG3604 291 ESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPL---------ALQAKLLRVLQEGEIERVGGDRTIKVDVRV 361 (550)
T ss_pred HHHHhcccccccccchhccCcceeecCCCeEechhhccCCH---------HHHHHHHHHHhhcceeecCCCceeEEEEEE
Confidence 111 011223333332222211111223999999988742 2223333333221 2222221 26999
Q ss_pred EEEeCCCCccchhhcCCCccce-------EEEEcCCCHHHHHH----HHHHHHhcccccCCC----CCcccHHHHHHhcC
Q 004584 371 IGMTNRKDMLDEALLRPGRLEV-------QVEISLPDENGRLQ----ILQIHTNKMKENSFL----APDVNLQELAARTK 435 (744)
Q Consensus 371 I~~tn~~~~id~al~r~gRf~~-------~i~i~~Pd~~~r~~----Il~~~~~~~~~~~~~----~~~~~l~~la~~t~ 435 (744)
|++||+- +..+.+ .|+|.. .+-+.+|...+|.+ +.+.++.++...... .+...++.|.+..-
T Consensus 362 IAATNRD--L~~~V~-~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~w 438 (550)
T COG3604 362 IAATNRD--LEEMVR-DGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEW 438 (550)
T ss_pred Eeccchh--HHHHHH-cCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCC
Confidence 9999983 333332 344331 24455565555532 223334433221111 12234556666554
Q ss_pred CCChHHHHHHHHHHHHHHHHhcc
Q 004584 436 NYSGAELEGVAKSAVSFALNRQL 458 (744)
Q Consensus 436 g~sg~dl~~l~~~A~~~a~~r~~ 458 (744)
--+-++|++++++|+..| .+.+
T Consensus 439 PGNVRELen~veRavlla-~~~~ 460 (550)
T COG3604 439 PGNVRELENVVERAVLLA-GRLT 460 (550)
T ss_pred CCcHHHHHHHHHHHHHHh-cccC
Confidence 446799999999999988 5443
No 413
>PF13173 AAA_14: AAA domain
Probab=98.42 E-value=1.2e-06 Score=80.51 Aligned_cols=120 Identities=19% Similarity=0.179 Sum_probs=70.3
Q ss_pred eeeeeecCCCCChhHHHHHHHhhcC--CCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhhccCCC
Q 004584 535 VTCLLEGPSGSGKTALAATAGIDSD--FPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPI 612 (744)
Q Consensus 535 ~~~Ll~GppG~GKT~la~~~a~~~~--~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~~~ 612 (744)
+.++|+||.|||||++++.++.... .+++.++..+...-... .. .+.+.+.+.......+||||||+.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~i~iDEiq~~~----- 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA--DP-DLLEYFLELIKPGKKYIFIDEIQYLP----- 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh--hh-hhHHHHHHhhccCCcEEEEehhhhhc-----
Confidence 4589999999999999999997765 55565644432110000 00 03334443332356899999999974
Q ss_pred CcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCC-C--ccccccccceEEEcCCCCHHHH
Q 004584 613 GPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFL-D--SVGICDAFSVTYHVPTLKTDDA 673 (744)
Q Consensus 613 g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l-~--~~~l~~rf~~~i~~p~~~~~~~ 673 (744)
.+...+..+.+.. .++-|+.|++....+ . ...+.+|.. .+++.|++-.|+
T Consensus 75 ------~~~~~lk~l~d~~----~~~~ii~tgS~~~~l~~~~~~~l~gr~~-~~~l~Plsf~E~ 127 (128)
T PF13173_consen 75 ------DWEDALKFLVDNG----PNIKIILTGSSSSLLSKDIAESLAGRVI-EIELYPLSFREF 127 (128)
T ss_pred ------cHHHHHHHHHHhc----cCceEEEEccchHHHhhcccccCCCeEE-EEEECCCCHHHh
Confidence 2334444444432 233444444443333 2 125667766 789999987664
No 414
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.42 E-value=3.4e-06 Score=98.72 Aligned_cols=167 Identities=14% Similarity=0.119 Sum_probs=86.1
Q ss_pred cCchHHHHHHHHHHHHhccCCChh-------HHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhc
Q 004584 221 IGGLSAEFADIFRRAFASRVFPPH-------VTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (744)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~-------~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~ 293 (744)
|-|.+..++.|+-..|.-.-.... .+....++..-+|||+|+||||||.+|+++++... +.. +.++.....
T Consensus 452 I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lsp-R~~-ytsG~~~s~ 529 (915)
T PTZ00111 452 IKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSP-RSI-YTSGKSSSS 529 (915)
T ss_pred EECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCC-ccc-cCCCCCCcc
Confidence 777777777665544432211100 00001234455899999999999999999998643 111 111111111
Q ss_pred ccccchHHHH-HHHHH--HHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCc--------
Q 004584 294 KFVGETEKNI-RDLFA--DAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV-------- 362 (744)
Q Consensus 294 ~~~g~~~~~i-~~~f~--~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~-------- 362 (744)
+|-+.... +.-.. .......... ....+++|||+|.+.+ .....|+..|+.-
T Consensus 530 --vgLTa~~~~~d~~tG~~~le~GaLvl--AdgGtL~IDEidkms~-------------~~Q~aLlEaMEqqtIsI~KaG 592 (915)
T PTZ00111 530 --VGLTASIKFNESDNGRAMIQPGAVVL--ANGGVCCIDELDKCHN-------------ESRLSLYEVMEQQTVTIAKAG 592 (915)
T ss_pred --ccccchhhhcccccCcccccCCcEEE--cCCCeEEecchhhCCH-------------HHHHHHHHHHhCCEEEEecCC
Confidence 11111000 00000 0000000000 0113999999998742 2233444444321
Q ss_pred ---cCCCcEEEEEEeCCCC-------------ccchhhcCCCccceE-EEEcCCCHHHHHHHH
Q 004584 363 ---ESLNNVLLIGMTNRKD-------------MLDEALLRPGRLEVQ-VEISLPDENGRLQIL 408 (744)
Q Consensus 363 ---~~~~~v~vI~~tn~~~-------------~id~al~r~gRf~~~-i~i~~Pd~~~r~~Il 408 (744)
.-..++.|||++|+.. .+++++++ |||.. +.++.|+++.=..|.
T Consensus 593 i~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA 653 (915)
T PTZ00111 593 IVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLIS 653 (915)
T ss_pred cceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHH
Confidence 1124789999999852 25899999 99866 456677765444443
No 415
>PRK08181 transposase; Validated
Probab=98.41 E-value=5.7e-07 Score=92.97 Aligned_cols=102 Identities=23% Similarity=0.408 Sum_probs=62.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh--cCCCcEEecccchhcccccc-hHHHHHHHHHHHHhcccccCCCCCeeEEEEc
Q 004584 253 HVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPEVLSKFVGE-TEKNIRDLFADAENDQRTRGDQSDLHVIIFD 329 (744)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~la~~l--~~~~~~~v~~~~l~~~~~g~-~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iD 329 (744)
...+++|+||||||||+|+.++++.+ .+..+.+++.++++..+... ......+.++.... +.+|+||
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~----------~dLLIID 174 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDK----------FDLLILD 174 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhc----------CCEEEEe
Confidence 34689999999999999999999876 34556777777777654211 11122233333322 4599999
Q ss_pred CcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCC
Q 004584 330 EIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRK 377 (744)
Q Consensus 330 Eid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~ 377 (744)
|++.+... ......+.++++... .. -.+|.+||.+
T Consensus 175 Dlg~~~~~--------~~~~~~Lf~lin~R~---~~--~s~IiTSN~~ 209 (269)
T PRK08181 175 DLAYVTKD--------QAETSVLFELISARY---ER--RSILITANQP 209 (269)
T ss_pred ccccccCC--------HHHHHHHHHHHHHHH---hC--CCEEEEcCCC
Confidence 99876422 122334445554422 11 2477778775
No 416
>PRK06526 transposase; Provisional
Probab=98.41 E-value=3.4e-07 Score=94.11 Aligned_cols=102 Identities=20% Similarity=0.283 Sum_probs=59.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh--cCCCcEEecccchhcccccch-HHHHHHHHHHHHhcccccCCCCCeeEEEEc
Q 004584 253 HVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPEVLSKFVGET-EKNIRDLFADAENDQRTRGDQSDLHVIIFD 329 (744)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~la~~l--~~~~~~~v~~~~l~~~~~g~~-~~~i~~~f~~a~~~~~~~~~~~~p~Il~iD 329 (744)
...+++|+||||||||+++.+++.++ .+..+.+++.++++....... ...+...+.... .+.+|+||
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~----------~~dlLIID 166 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLG----------RYPLLIVD 166 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhc----------cCCEEEEc
Confidence 35689999999999999999999876 234455556666555432110 011112222211 24599999
Q ss_pred CcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCC
Q 004584 330 EIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRK 377 (744)
Q Consensus 330 Eid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~ 377 (744)
|++.+... .....++.+++.... .. -.+|.+||.+
T Consensus 167 D~g~~~~~--------~~~~~~L~~li~~r~---~~--~s~IitSn~~ 201 (254)
T PRK06526 167 EVGYIPFE--------PEAANLFFQLVSSRY---ER--ASLIVTSNKP 201 (254)
T ss_pred ccccCCCC--------HHHHHHHHHHHHHHH---hc--CCEEEEcCCC
Confidence 99976421 122344555554322 11 2377788876
No 417
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.40 E-value=6.8e-07 Score=91.05 Aligned_cols=101 Identities=24% Similarity=0.369 Sum_probs=64.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEecccchhcccccch---HHHHHHHHHHHHhcccccCCCCCeeEEEEc
Q 004584 255 KGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGET---EKNIRDLFADAENDQRTRGDQSDLHVIIFD 329 (744)
Q Consensus 255 ~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~~~g~~---~~~i~~~f~~a~~~~~~~~~~~~p~Il~iD 329 (744)
.+++|+|+||||||+++.++++.+. +..+.+++.++++....... .....++++... ...+|+||
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~----------~~dlLvID 169 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS----------NVDLLVID 169 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc----------cCCEEEEe
Confidence 4899999999999999999999983 45666777777765432211 111223333322 13599999
Q ss_pred CcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCC
Q 004584 330 EIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRK 377 (744)
Q Consensus 330 Eid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~ 377 (744)
|++.... +.....++.++++. ....+..+|.+||..
T Consensus 170 Dig~~~~--------s~~~~~~l~~Ii~~----Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 170 EIGVQTE--------SRYEKVIINQIVDR----RSSSKRPTGMLTNSN 205 (244)
T ss_pred CCCCCCC--------CHHHHHHHHHHHHH----HHhCCCCEEEeCCCC
Confidence 9987531 13344566666554 222345677788874
No 418
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.36 E-value=1.3e-05 Score=90.27 Aligned_cols=213 Identities=15% Similarity=0.220 Sum_probs=110.7
Q ss_pred ccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE-Eecccchh
Q 004584 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK-IVNGPEVL 292 (744)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~-~v~~~~l~ 292 (744)
-+.++ +.-..+.++++ +.++...+. +....+-+||+||||||||++++.+|++++ ..+. ..+...+.
T Consensus 16 ~~~~e--LavhkkKv~eV-~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg-~~v~Ew~np~~~~ 83 (519)
T PF03215_consen 16 KTLDE--LAVHKKKVEEV-RSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELG-FEVQEWINPVSFR 83 (519)
T ss_pred CCHHH--hhccHHHHHHH-HHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhC-CeeEEecCCCCcc
Confidence 34555 66677778888 888765432 223345678899999999999999999994 2222 22222210
Q ss_pred ------cccccchH------HHHHHHHHHH----Hhcccc--c--CCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHH
Q 004584 293 ------SKFVGETE------KNIRDLFADA----ENDQRT--R--GDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIV 352 (744)
Q Consensus 293 ------~~~~g~~~------~~i~~~f~~a----~~~~~~--~--~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~ 352 (744)
..|.+... .. ...|..- ...... . .....+.||+|||+-.++... ..++.
T Consensus 84 ~~~~~~~d~~s~~~~~~~f~sq-~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~---------~~~f~ 153 (519)
T PF03215_consen 84 ESDNQEDDFESDFNKFDEFLSQ-SDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD---------TSRFR 153 (519)
T ss_pred ccccccccccccccccccccch-hhhhccccccccccccccccCCCcCCCceEEEeeccccccchh---------HHHHH
Confidence 11111100 11 1123222 111000 0 112357799999987654221 13333
Q ss_pred HHHHHhccCccCCCcEEEEEE-e------CCC--------CccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcc--
Q 004584 353 NQLLTKIDGVESLNNVLLIGM-T------NRK--------DMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKM-- 415 (744)
Q Consensus 353 ~~LL~~~d~~~~~~~v~vI~~-t------n~~--------~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~-- 415 (744)
..|...+..-... ++++|.+ + |.. ..+++.++...+.. .|.|.+-...-...-|+..+...
T Consensus 154 ~~L~~~l~~~~~~-PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~-~I~FNpIa~T~mkKaL~rI~~~E~~ 231 (519)
T PF03215_consen 154 EALRQYLRSSRCL-PLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGIT-RIKFNPIAPTFMKKALKRILKKEAR 231 (519)
T ss_pred HHHHHHHHcCCCC-CEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCce-EEEecCCCHHHHHHHHHHHHHHHhh
Confidence 3333333321111 6666666 1 111 13466666544443 68888877766666555544432
Q ss_pred --cccCCCCCcc-cHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 004584 416 --KENSFLAPDV-NLQELAARTKNYSGAELEGVAKSAVSFAL 454 (744)
Q Consensus 416 --~~~~~~~~~~-~l~~la~~t~g~sg~dl~~l~~~A~~~a~ 454 (744)
.......... .++.++..+. +||+..+..-...+.
T Consensus 232 ~~~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 232 SSSGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred hhcCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 1111111212 2667776654 499888877666665
No 419
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.36 E-value=2.7e-06 Score=99.60 Aligned_cols=122 Identities=12% Similarity=0.194 Sum_probs=71.0
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhcC-------CCEEEEcccccccccchhhHhhHH--HHHHHHHhcCCCeEEEEeccc
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDSD-------FPFVKIISAESMIGLHESTKCAQI--VKVFEDAYKSPLSIIILDDIE 604 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~~-------~~~i~v~~~~~~~g~~~~~~~~~i--~~if~~a~~~~~~il~iDEid 604 (744)
..++||.|+||||||.+|++++..+. .++..+....... .....+.... ...+. .+..++++|||++
T Consensus 492 dihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~-~~d~~tG~~~le~GaLv---lAdgGtL~IDEid 567 (915)
T PTZ00111 492 IINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIK-FNESDNGRAMIQPGAVV---LANGGVCCIDELD 567 (915)
T ss_pred CceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhh-hcccccCcccccCCcEE---EcCCCeEEecchh
Confidence 46899999999999999999998653 2333322111100 0000000000 00111 1234799999999
Q ss_pred hhhccCCCCcchhHHHHHHHHHHhccCC----C------CCCcEEEEEeCCCCC-CCC-----------ccccccccceE
Q 004584 605 RLLEYVPIGPRFSNIISQTMLVLLKRLP----P------KGKKLLVIGTTSEVS-FLD-----------SVGICDAFSVT 662 (744)
Q Consensus 605 ~l~~~~~~g~~~~~~~~~~Ll~~l~~~~----~------~~~~v~vi~~tn~~~-~l~-----------~~~l~~rf~~~ 662 (744)
++. ...+..|++.|++-. . -..++.||||+|... ..| +..+.+|||.+
T Consensus 568 kms----------~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLI 637 (915)
T PTZ00111 568 KCH----------NESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLI 637 (915)
T ss_pred hCC----------HHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEE
Confidence 974 667788888886532 0 124789999999742 111 12456999866
Q ss_pred EE-cCCCC
Q 004584 663 YH-VPTLK 669 (744)
Q Consensus 663 i~-~p~~~ 669 (744)
+- ++.++
T Consensus 638 f~l~D~~d 645 (915)
T PTZ00111 638 YLVLDHID 645 (915)
T ss_pred EEecCCCC
Confidence 43 34455
No 420
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.35 E-value=1.6e-06 Score=79.80 Aligned_cols=100 Identities=20% Similarity=0.320 Sum_probs=58.7
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhc--------CCCEEEEcccccc------------cccc--h-hhHhhHHHHHHHHH
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDS--------DFPFVKIISAESM------------IGLH--E-STKCAQIVKVFEDA 590 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~--------~~~~i~v~~~~~~------------~g~~--~-~~~~~~i~~if~~a 590 (744)
...++++||||+|||++++.++... ..+++.+..+... ++.. . .........+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4678999999999999999999875 5667777555331 1111 1 11122223333334
Q ss_pred hcCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCC
Q 004584 591 YKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTS 645 (744)
Q Consensus 591 ~~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn 645 (744)
......+|+|||+|.|. +...+..|..+++ ...-.++++|+.+
T Consensus 84 ~~~~~~~lviDe~~~l~---------~~~~l~~l~~l~~---~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF---------SDEFLEFLRSLLN---ESNIKVVLVGTPE 126 (131)
T ss_dssp HHCTEEEEEEETTHHHH---------THHHHHHHHHHTC---SCBEEEEEEESST
T ss_pred HhcCCeEEEEeChHhcC---------CHHHHHHHHHHHh---CCCCeEEEEEChh
Confidence 44444699999999974 2556666666655 2334666776664
No 421
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.34 E-value=1.4e-05 Score=80.35 Aligned_cols=110 Identities=21% Similarity=0.130 Sum_probs=66.7
Q ss_pred CeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCC-------------CCccchhhcCCC
Q 004584 322 DLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNR-------------KDMLDEALLRPG 388 (744)
Q Consensus 322 ~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~-------------~~~id~al~r~g 388 (744)
-|.+|||||++.|- -+.+..|-..++ +.-.-+||.++|+ |..+++.|+.
T Consensus 296 vPGVLFIDEVhMLD-------------iEcFTyL~kalE---S~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD-- 357 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLD-------------IECFTYLHKALE---SPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD-- 357 (456)
T ss_pred cCcceEeeehhhhh-------------hHHHHHHHHHhc---CCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh--
Confidence 36799999999872 233444444444 2223467777777 3456777776
Q ss_pred ccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 004584 389 RLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFA 453 (744)
Q Consensus 389 Rf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a 453 (744)
|+- .|..-++++++.++|++...+.-. ...++..+..++.....-+-+-..+|+.-|...|
T Consensus 358 Rl~-Iirt~~y~~~e~r~Ii~~Ra~~E~---l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~a 418 (456)
T KOG1942|consen 358 RLL-IIRTLPYDEEEIRQIIKIRAQVEG---LQVEEEALDLLAEIGTSTSLRYAVQLLTPASILA 418 (456)
T ss_pred hee-EEeeccCCHHHHHHHHHHHHhhhc---ceecHHHHHHHHhhccchhHHHHHHhcCHHHHHH
Confidence 654 455567788889999988765432 1234555777777655545555555555444433
No 422
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.33 E-value=1.7e-06 Score=89.02 Aligned_cols=69 Identities=30% Similarity=0.563 Sum_probs=49.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEecccchhccccc-----chHHHHHHHHHHHHhcccccCCCCCeeE
Q 004584 253 HVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVG-----ETEKNIRDLFADAENDQRTRGDQSDLHV 325 (744)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~~~g-----~~~~~i~~~f~~a~~~~~~~~~~~~p~I 325 (744)
.+.+++|+||||||||+||-|+++++. +..+.+++.++++..... ..+..+...+ . ...+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l---~----------~~dl 170 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL---K----------KVDL 170 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh---h----------cCCE
Confidence 567999999999999999999999984 456677888888764322 2222222211 1 1349
Q ss_pred EEEcCcchh
Q 004584 326 IIFDEIDAI 334 (744)
Q Consensus 326 l~iDEid~l 334 (744)
|+|||+-..
T Consensus 171 LIiDDlG~~ 179 (254)
T COG1484 171 LIIDDIGYE 179 (254)
T ss_pred EEEecccCc
Confidence 999998875
No 423
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.32 E-value=1.9e-06 Score=97.01 Aligned_cols=178 Identities=21% Similarity=0.256 Sum_probs=98.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEecccchhcccccchHHHHHHHHHHHHh-------cccccCCCCCee
Q 004584 254 VKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGETEKNIRDLFADAEN-------DQRTRGDQSDLH 324 (744)
Q Consensus 254 ~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~-------~~~~~~~~~~p~ 324 (744)
..+++++|++||||+++|+++..... ..+++.++|..+.... .-..+|..... ..+..-......
T Consensus 162 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 235 (445)
T TIGR02915 162 DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENL------LESELFGYEKGAFTGAVKQTLGKIEYAHGG 235 (445)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHH------HHHHhcCCCCCCcCCCccCCCCceeECCCC
Confidence 35799999999999999999987753 3467888888663211 11122221110 000000011234
Q ss_pred EEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCc--c-------CCCcEEEEEEeCCCC-------ccchhhcCCC
Q 004584 325 VIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV--E-------SLNNVLLIGMTNRKD-------MLDEALLRPG 388 (744)
Q Consensus 325 Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~--~-------~~~~v~vI~~tn~~~-------~id~al~r~g 388 (744)
+|||||++.|.+ .+...|+..++.- . ...++.+|++|+..- .+.+.|..
T Consensus 236 tl~l~~i~~l~~-------------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~-- 300 (445)
T TIGR02915 236 TLFLDEIGDLPL-------------NLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY-- 300 (445)
T ss_pred EEEEechhhCCH-------------HHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--
Confidence 999999999852 2333344433311 1 112688999987752 22333322
Q ss_pred ccceEEEEcCCCHHHHHH----HHHHHHhcccc----cCCCCCcccHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 004584 389 RLEVQVEISLPDENGRLQ----ILQIHTNKMKE----NSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFA 453 (744)
Q Consensus 389 Rf~~~i~i~~Pd~~~r~~----Il~~~~~~~~~----~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a 453 (744)
|+. .+.+.+|...+|.+ +++.+++.+.. ...-..+..+..|....-.-+.++|+++++.|+..+
T Consensus 301 ~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 301 RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA 372 (445)
T ss_pred Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 333 35566777666654 44444443321 111123334556666554457799999999988644
No 424
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.31 E-value=1.1e-06 Score=92.90 Aligned_cols=103 Identities=22% Similarity=0.403 Sum_probs=63.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEecccchhcccccchH-HHHHHHHHHHHhcccccCCCCCeeEEEEc
Q 004584 253 HVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGETE-KNIRDLFADAENDQRTRGDQSDLHVIIFD 329 (744)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~~~g~~~-~~i~~~f~~a~~~~~~~~~~~~p~Il~iD 329 (744)
..+|++|+||+|||||+|+.++|+++. +..+.++..++++........ ....+.++.... ..+|+||
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~----------~dlLiID 224 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKE----------APVLMLD 224 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcC----------CCEEEEe
Confidence 468999999999999999999999983 445666777777654322110 112233333222 3599999
Q ss_pred CcchhcccCCCCCCCCccHHHHHHHHHHh-ccCccCCCcEEEEEEeCCC
Q 004584 330 EIDAICKSRGSTRDGTGVHDSIVNQLLTK-IDGVESLNNVLLIGMTNRK 377 (744)
Q Consensus 330 Eid~l~~~~~~~~~~~~~~~~~~~~LL~~-~d~~~~~~~v~vI~~tn~~ 377 (744)
|+..-... .-..+.++..++.. +. .+..+|.|||.+
T Consensus 225 DiG~e~~s-------~~~~~~ll~~Il~~R~~-----~~~~ti~TSNl~ 261 (306)
T PRK08939 225 DIGAEQMS-------SWVRDEVLGVILQYRMQ-----EELPTFFTSNFD 261 (306)
T ss_pred cCCCcccc-------HHHHHHHHHHHHHHHHH-----CCCeEEEECCCC
Confidence 99764211 01223455555432 22 345688888875
No 425
>PRK09183 transposase/IS protein; Provisional
Probab=98.31 E-value=1.3e-06 Score=90.43 Aligned_cols=75 Identities=20% Similarity=0.382 Sum_probs=48.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh--cCCCcEEecccchhcccccc-hHHHHHHHHHHHHhcccccCCCCCeeEEEE
Q 004584 252 KHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPEVLSKFVGE-TEKNIRDLFADAENDQRTRGDQSDLHVIIF 328 (744)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~la~~l--~~~~~~~v~~~~l~~~~~g~-~~~~i~~~f~~a~~~~~~~~~~~~p~Il~i 328 (744)
....+++|+||||||||+++.+++... .+..+.+++..++...+... ....+..++..... .+.+++|
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~---------~~dlLii 170 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVM---------APRLLII 170 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhc---------CCCEEEE
Confidence 345689999999999999999998775 34456666777666443211 11123344443221 2469999
Q ss_pred cCcchhc
Q 004584 329 DEIDAIC 335 (744)
Q Consensus 329 DEid~l~ 335 (744)
||++.+.
T Consensus 171 Ddlg~~~ 177 (259)
T PRK09183 171 DEIGYLP 177 (259)
T ss_pred cccccCC
Confidence 9998753
No 426
>PRK06921 hypothetical protein; Provisional
Probab=98.30 E-value=4.4e-06 Score=86.70 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=31.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhc---CCCcEEecccchhc
Q 004584 253 HVKGMLLYGPPGTGKTLMARQIGKMLN---GMEPKIVNGPEVLS 293 (744)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~la~~l~---~~~~~~v~~~~l~~ 293 (744)
...+++|+||||||||+|+.++|+++. +..+.+++..+++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~ 159 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG 159 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH
Confidence 356899999999999999999999884 34455555555444
No 427
>PRK08181 transposase; Validated
Probab=98.29 E-value=1.4e-06 Score=90.11 Aligned_cols=101 Identities=19% Similarity=0.306 Sum_probs=59.9
Q ss_pred ceeeeeecCCCCChhHHHHHHHhh---cCCCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhhccC
Q 004584 534 LVTCLLEGPSGSGKTALAATAGID---SDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYV 610 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~---~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~ 610 (744)
..+++|+||||||||++|.++++. .+..++.+..++.+.-...........+.++... .+.+|+|||++.+..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~-- 181 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTK-- 181 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccC--
Confidence 467999999999999999999864 3556666655443211111111122334555443 457999999987641
Q ss_pred CCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCC
Q 004584 611 PIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEV 647 (744)
Q Consensus 611 ~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~ 647 (744)
+....+.|..+++..... +- +|-|||.+
T Consensus 182 ------~~~~~~~Lf~lin~R~~~--~s-~IiTSN~~ 209 (269)
T PRK08181 182 ------DQAETSVLFELISARYER--RS-ILITANQP 209 (269)
T ss_pred ------CHHHHHHHHHHHHHHHhC--CC-EEEEcCCC
Confidence 234455666666654222 22 34467654
No 428
>PRK08116 hypothetical protein; Validated
Probab=98.28 E-value=2e-06 Score=89.39 Aligned_cols=144 Identities=20% Similarity=0.179 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEcccccccccc---hhhHhhHHHHH
Q 004584 513 KHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIGLH---ESTKCAQIVKV 586 (744)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~~~g~~---~~~~~~~i~~i 586 (744)
..++..+..+.+.+.... ....+++|+|+||||||++|.++|+.. +.+++.++.++.+.... .........++
T Consensus 94 ~~a~~~a~~y~~~~~~~~-~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~ 172 (268)
T PRK08116 94 EKAYKIARKYVKKFEEMK-KENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEI 172 (268)
T ss_pred HHHHHHHHHHHHHHHhhc-cCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHH
Confidence 345556666666554322 233579999999999999999999863 66776665554321100 00000112233
Q ss_pred HHHHhcCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCC-CCCCc---ccccccc---
Q 004584 587 FEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEV-SFLDS---VGICDAF--- 659 (744)
Q Consensus 587 f~~a~~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~-~~l~~---~~l~~rf--- 659 (744)
++... ...+|+|||+.... .++..+..|..+++..-..+ . .+|.|||.+ +.|.. ..+.+|+
T Consensus 173 ~~~l~--~~dlLviDDlg~e~--------~t~~~~~~l~~iin~r~~~~-~-~~IiTsN~~~~eL~~~~~~ri~sRl~e~ 240 (268)
T PRK08116 173 IRSLV--NADLLILDDLGAER--------DTEWAREKVYNIIDSRYRKG-L-PTIVTTNLSLEELKNQYGKRIYDRILEM 240 (268)
T ss_pred HHHhc--CCCEEEEecccCCC--------CCHHHHHHHHHHHHHHHHCC-C-CEEEECCCCHHHHHHHHhHHHHHHHHHc
Confidence 33332 34699999996521 13445566666666542222 2 355577754 22211 1233553
Q ss_pred ceEEEcCCCC
Q 004584 660 SVTYHVPTLK 669 (744)
Q Consensus 660 ~~~i~~p~~~ 669 (744)
...+.++.++
T Consensus 241 ~~~v~~~g~d 250 (268)
T PRK08116 241 CTPVENEGKS 250 (268)
T ss_pred CEEEEeeCcC
Confidence 4556666555
No 429
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.27 E-value=6.5e-07 Score=87.12 Aligned_cols=72 Identities=24% Similarity=0.512 Sum_probs=46.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh--cCCCcEEecccchhcccccch-HHHHHHHHHHHHhcccccCCCCCeeEEEEc
Q 004584 253 HVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPEVLSKFVGET-EKNIRDLFADAENDQRTRGDQSDLHVIIFD 329 (744)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~la~~l--~~~~~~~v~~~~l~~~~~g~~-~~~i~~~f~~a~~~~~~~~~~~~p~Il~iD 329 (744)
...+++|+||||||||++|.++++++ .+..+.+++.++++....... .....+.++.... ..+|+||
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~----------~dlLilD 115 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR----------VDLLILD 115 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT----------SSCEEEE
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc----------ccEeccc
Confidence 45799999999999999999999877 456677888888876432210 1112233333332 2499999
Q ss_pred Ccchh
Q 004584 330 EIDAI 334 (744)
Q Consensus 330 Eid~l 334 (744)
|+...
T Consensus 116 DlG~~ 120 (178)
T PF01695_consen 116 DLGYE 120 (178)
T ss_dssp TCTSS
T ss_pred cccee
Confidence 98643
No 430
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.27 E-value=2e-06 Score=87.71 Aligned_cols=137 Identities=19% Similarity=0.245 Sum_probs=87.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhcCC-CcE----EecccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcC
Q 004584 256 GMLLYGPPGTGKTLMARQIGKMLNGM-EPK----IVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDE 330 (744)
Q Consensus 256 giLL~GppGtGKT~lar~la~~l~~~-~~~----~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDE 330 (744)
++|+|||||||||+...+.|..+.+. ++- ..+.++-.+. +..+.-...|..+...+-. +...++..+++||
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgi---d~vr~qi~~fast~~~~~f-st~~~fKlvILDE 139 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGI---DPVRQQIHLFASTQQPTTY-STHAAFKLVILDE 139 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCC---cchHHHHHHHHhhccceec-cccCceeEEEecc
Confidence 79999999999999999999999652 221 1222221111 2233444566665532111 1123577999999
Q ss_pred cchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHH
Q 004584 331 IDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQI 410 (744)
Q Consensus 331 id~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~ 410 (744)
.|++. ....++|-..++.+. .++.++..+|.+..+.|++++ ||.+ +.|.+.+.......+..
T Consensus 140 ADaMT-------------~~AQnALRRviek~t--~n~rF~ii~n~~~ki~pa~qs--Rctr-frf~pl~~~~~~~r~sh 201 (360)
T KOG0990|consen 140 ADAMT-------------RDAQNALRRVIEKYT--ANTRFATISNPPQKIHPAQQS--RCTR-FRFAPLTMAQQTERQSH 201 (360)
T ss_pred hhHhh-------------HHHHHHHHHHHHHhc--cceEEEEeccChhhcCchhhc--cccc-CCCCCCChhhhhhHHHH
Confidence 99975 233444555555333 356666778999999999998 7764 45666676666677776
Q ss_pred HHhc
Q 004584 411 HTNK 414 (744)
Q Consensus 411 ~~~~ 414 (744)
++..
T Consensus 202 i~e~ 205 (360)
T KOG0990|consen 202 IRES 205 (360)
T ss_pred HHhc
Confidence 6643
No 431
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.27 E-value=1.6e-05 Score=80.85 Aligned_cols=166 Identities=25% Similarity=0.331 Sum_probs=84.1
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhcCCC---EEEEccccc--------c-------------ccc-------------c
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDSDFP---FVKIISAES--------M-------------IGL-------------H 575 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~~~~---~i~v~~~~~--------~-------------~g~-------------~ 575 (744)
+...++++||.|+|||++++.+....... .+.+..... + .+. .
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDL 98 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcc
Confidence 46789999999999999999999876321 111111000 0 000 0
Q ss_pred hhhHhhHHHHHHHHHhcC-CCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCC---CCCC
Q 004584 576 ESTKCAQIVKVFEDAYKS-PLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEV---SFLD 651 (744)
Q Consensus 576 ~~~~~~~i~~if~~a~~~-~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~---~~l~ 651 (744)
.......+.++++...+. ...||+|||++.+. .. ..........|...++.........+|+++++.. +..+
T Consensus 99 ~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~-~~---~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~ 174 (234)
T PF01637_consen 99 SEDSFSALERLLEKLKKKGKKVIIVIDEFQYLA-IA---SEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLD 174 (234)
T ss_dssp -GG-G--HHHHHHHHHHCHCCEEEEEETGGGGG-BC---TTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHh-hc---ccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhc
Confidence 011234556666665443 23899999999997 11 1112455555666666543333344555555421 1122
Q ss_pred c-cccccccceEEEcCCCCHHHHHHHHHHc----cC--CCHHHHHHHHHhCCCCcHHHHH
Q 004584 652 S-VGICDAFSVTYHVPTLKTDDAKKVLKQL----NV--FAEEDVDSASEALNDMPIKKLY 704 (744)
Q Consensus 652 ~-~~l~~rf~~~i~~p~~~~~~~~~Il~~~----~~--~~~~~~~~~~~~~~~g~ir~l~ 704 (744)
. ..+.+|+.. +.+++++.++..++++.. .. .+++++ ..+...++|..+.+.
T Consensus 175 ~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 175 DKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDI-EEIYSLTGGNPRYLQ 232 (234)
T ss_dssp TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHH-HHHHHHHTT-HHHHH
T ss_pred ccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHH-HHHHHHhCCCHHHHh
Confidence 2 244578887 999999999999999983 12 245555 444445566666553
No 432
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.26 E-value=1.5e-05 Score=80.96 Aligned_cols=159 Identities=18% Similarity=0.121 Sum_probs=98.6
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhcCCC--------------EEEEcccccccccch--hhHhhHHHHHHHHHh----
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFP--------------FVKIISAESMIGLHE--STKCAQIVKVFEDAY---- 591 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~~~~--------------~i~v~~~~~~~g~~~--~~~~~~i~~if~~a~---- 591 (744)
.++...||+||+|+||..+|.++|...-+. +-.-.-|+...-..+ .-+.+.++++-+...
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 456778999999999999999988543110 000011111110001 112345666555432
Q ss_pred -cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCCC--
Q 004584 592 -KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTL-- 668 (744)
Q Consensus 592 -~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~-- 668 (744)
.+...|++||++|++. ....++||..|+..++ ++++|-.|+.++.+-+ -+++| +..+.||++
T Consensus 85 e~~~~KV~II~~ae~m~----------~~AaNaLLK~LEEPp~---~t~fiLit~~~~~lLp-TI~SR-Cq~~~~~~~~~ 149 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN----------KQSANSLLKLIEEPPK---NTYGIFTTRNENNILN-TILSR-CVQYVVLSKEK 149 (261)
T ss_pred hcCCCEEEEeccHhhhC----------HHHHHHHHHhhcCCCC---CeEEEEEECChHhCch-Hhhhh-eeeeecCChhh
Confidence 2346899999999984 6677889888888543 4555556666665555 44555 456788887
Q ss_pred --------CHHHHHHHHHHccCCCHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 004584 669 --------KTDDAKKVLKQLNVFAEEDVDSASEALNDMPIKKLYMLIEMA 710 (744)
Q Consensus 669 --------~~~~~~~Il~~~~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a 710 (744)
+..++.+.+..... +.+.++..+.|+..+++.+++..
T Consensus 150 ~~~~~~~~~~~~i~~~L~~~~~-----~d~~i~~~a~g~~~~a~~l~~~l 194 (261)
T PRK05818 150 KVPFKVESNDRYFQYILLSFYS-----VDEQLQAYNNGSFSKLKNIIETL 194 (261)
T ss_pred hcccccccChHHHHHHHHHccC-----ccHHHHHHcCCCHHHHHHHHHHH
Confidence 45566666655333 22256667789999998888743
No 433
>PRK12377 putative replication protein; Provisional
Probab=98.26 E-value=5.1e-06 Score=84.88 Aligned_cols=120 Identities=17% Similarity=0.203 Sum_probs=67.6
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEcccccccccchh-hHhhHHHHHH
Q 004584 512 HKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIGLHES-TKCAQIVKVF 587 (744)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~~~g~~~~-~~~~~i~~if 587 (744)
...++..+..+.+.+.. ...+++|+||||||||++|.++|+.. +..++.+..++.+...... .......+++
T Consensus 83 ~~~a~~~a~~~a~~~~~----~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l 158 (248)
T PRK12377 83 QRYALSQAKSIADELMT----GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFL 158 (248)
T ss_pred HHHHHHHHHHHHHHHHh----cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHH
Confidence 33455566666655543 23689999999999999999999765 4555555444432111000 0000122344
Q ss_pred HHHhcCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCC
Q 004584 588 EDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEV 647 (744)
Q Consensus 588 ~~a~~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~ 647 (744)
+.. ....+|+|||++... .++..+..|..+++..-..... . |-|||..
T Consensus 159 ~~l--~~~dLLiIDDlg~~~--------~s~~~~~~l~~ii~~R~~~~~p-t-iitSNl~ 206 (248)
T PRK12377 159 QEL--CKVDLLVLDEIGIQR--------ETKNEQVVLNQIIDRRTASMRS-V-GMLTNLN 206 (248)
T ss_pred HHh--cCCCEEEEcCCCCCC--------CCHHHHHHHHHHHHHHHhcCCC-E-EEEcCCC
Confidence 443 345799999997642 2344555666666654222222 3 3467753
No 434
>PRK06526 transposase; Provisional
Probab=98.26 E-value=1.2e-06 Score=90.25 Aligned_cols=101 Identities=17% Similarity=0.263 Sum_probs=55.3
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEcccccccccc-hhhHhhHHHHHHHHHhcCCCeEEEEeccchhhc
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIGLH-ESTKCAQIVKVFEDAYKSPLSIIILDDIERLLE 608 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~~~g~~-~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~ 608 (744)
...+++|+||||||||++|.+++.+. +.....+..++ ++... .......+.+.+... ..+.+|+|||++.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~-l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~- 172 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQ-WVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP- 172 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHH-HHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC-
Confidence 34689999999999999999998653 44433332222 21111 000111223333333 346899999999864
Q ss_pred cCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCC
Q 004584 609 YVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEV 647 (744)
Q Consensus 609 ~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~ 647 (744)
.+....+.|..+++..... . -+|.|||.+
T Consensus 173 -------~~~~~~~~L~~li~~r~~~--~-s~IitSn~~ 201 (254)
T PRK06526 173 -------FEPEAANLFFQLVSSRYER--A-SLIVTSNKP 201 (254)
T ss_pred -------CCHHHHHHHHHHHHHHHhc--C-CEEEEcCCC
Confidence 1233334455555443222 2 245577765
No 435
>PF13173 AAA_14: AAA domain
Probab=98.25 E-value=7.5e-06 Score=75.27 Aligned_cols=119 Identities=22% Similarity=0.292 Sum_probs=67.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhc-CCCcEEecccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcch
Q 004584 255 KGMLLYGPPGTGKTLMARQIGKMLN-GMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDA 333 (744)
Q Consensus 255 ~giLL~GppGtGKT~lar~la~~l~-~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~ 333 (744)
+-++|+||.|+|||++++.+++.+. ...+..++..+.......... +.+.+...... ...+|||||++.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~--------~~~~i~iDEiq~ 72 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKP--------GKKYIFIDEIQY 72 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhcc--------CCcEEEEehhhh
Confidence 4689999999999999999998874 245566666554332111110 22223222111 245999999998
Q ss_pred hcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCcc----chhhcCCCccceEEEEcCCCHHH
Q 004584 334 ICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDML----DEALLRPGRLEVQVEISLPDENG 403 (744)
Q Consensus 334 l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~i----d~al~r~gRf~~~i~i~~Pd~~~ 403 (744)
+. .....+..+... ..++.+|.|++....+ ...+ .||.. .+++.+.+-.|
T Consensus 73 ~~-----------~~~~~lk~l~d~------~~~~~ii~tgS~~~~l~~~~~~~l--~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 73 LP-----------DWEDALKFLVDN------GPNIKIILTGSSSSLLSKDIAESL--AGRVI-EIELYPLSFRE 126 (128)
T ss_pred hc-----------cHHHHHHHHHHh------ccCceEEEEccchHHHhhcccccC--CCeEE-EEEECCCCHHH
Confidence 72 123344444442 1345555555544333 2333 55765 56777776553
No 436
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.24 E-value=2.6e-06 Score=90.70 Aligned_cols=70 Identities=24% Similarity=0.446 Sum_probs=46.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--cCCCcEEecccchhcccccc---hHHHHHHHHHHHHhcccccCCCCCeeEEEEc
Q 004584 255 KGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPEVLSKFVGE---TEKNIRDLFADAENDQRTRGDQSDLHVIIFD 329 (744)
Q Consensus 255 ~giLL~GppGtGKT~lar~la~~l--~~~~~~~v~~~~l~~~~~g~---~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iD 329 (744)
.+++|+||||||||+|+.++|+++ .+..+.+++.++++...... ........++.... ..+|+||
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~----------~DLLIID 253 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLIN----------CDLLIID 253 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhcc----------CCEEEEe
Confidence 789999999999999999999988 34566777777776643211 00011111222221 3499999
Q ss_pred Ccchh
Q 004584 330 EIDAI 334 (744)
Q Consensus 330 Eid~l 334 (744)
|+...
T Consensus 254 DlG~e 258 (329)
T PRK06835 254 DLGTE 258 (329)
T ss_pred ccCCC
Confidence 99875
No 437
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.24 E-value=1.6e-05 Score=79.56 Aligned_cols=160 Identities=21% Similarity=0.331 Sum_probs=105.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhcCCCc---EE-----ecc-------cchhccc--------ccc-hHHHHHHHHHHHH
Q 004584 256 GMLLYGPPGTGKTLMARQIGKMLNGMEP---KI-----VNG-------PEVLSKF--------VGE-TEKNIRDLFADAE 311 (744)
Q Consensus 256 giLL~GppGtGKT~lar~la~~l~~~~~---~~-----v~~-------~~l~~~~--------~g~-~~~~i~~~f~~a~ 311 (744)
++|+|||+|+||.|.+-++.+++-+..+ .+ ..+ +-+-+.| .|. ..--+.++.++..
T Consensus 36 Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevA 115 (351)
T KOG2035|consen 36 HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVA 115 (351)
T ss_pred eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHH
Confidence 6999999999999999999998854211 00 000 0011111 232 2334666776655
Q ss_pred hcccc-cCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCcc
Q 004584 312 NDQRT-RGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRL 390 (744)
Q Consensus 312 ~~~~~-~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf 390 (744)
+.++- ........+++|-|.|.|.. .....|-.-|+.. .+++.+|..+|....|-+++++ |.
T Consensus 116 Qt~qie~~~qr~fKvvvi~ead~LT~-------------dAQ~aLRRTMEkY--s~~~RlIl~cns~SriIepIrS--RC 178 (351)
T KOG2035|consen 116 QTQQIETQGQRPFKVVVINEADELTR-------------DAQHALRRTMEKY--SSNCRLILVCNSTSRIIEPIRS--RC 178 (351)
T ss_pred hhcchhhccccceEEEEEechHhhhH-------------HHHHHHHHHHHHH--hcCceEEEEecCcccchhHHhh--he
Confidence 44432 22334567999999999852 2334455555533 3578888889999999999998 75
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCC
Q 004584 391 EVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKN 436 (744)
Q Consensus 391 ~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g 436 (744)
- .|.+|.|+.++...++...+++-.. ..++.-+..+|+.+.|
T Consensus 179 l-~iRvpaps~eeI~~vl~~v~~kE~l---~lp~~~l~rIa~kS~~ 220 (351)
T KOG2035|consen 179 L-FIRVPAPSDEEITSVLSKVLKKEGL---QLPKELLKRIAEKSNR 220 (351)
T ss_pred e-EEeCCCCCHHHHHHHHHHHHHHhcc---cCcHHHHHHHHHHhcc
Confidence 4 5899999999999999888766442 2344556777777665
No 438
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.3e-06 Score=94.15 Aligned_cols=48 Identities=29% Similarity=0.495 Sum_probs=37.3
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKML 278 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l 278 (744)
..+|.| |.|++..++.+ ..+. --.+++||+||||||||++|+.+...|
T Consensus 175 ~~D~~D--V~GQ~~AKrAl-eiAA---------------AGgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKD--VKGQEQAKRAL-EIAA---------------AGGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred Ccchhh--hcCcHHHHHHH-HHHH---------------hcCCcEEEecCCCCchHHhhhhhcccC
Confidence 346777 99999998877 3222 123589999999999999999988766
No 439
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.23 E-value=5e-06 Score=76.57 Aligned_cols=88 Identities=26% Similarity=0.505 Sum_probs=49.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhc-------CCCcEEecccchhc--------------cccc-chHHHHHHHHHHHH
Q 004584 254 VKGMLLYGPPGTGKTLMARQIGKMLN-------GMEPKIVNGPEVLS--------------KFVG-ETEKNIRDLFADAE 311 (744)
Q Consensus 254 ~~giLL~GppGtGKT~lar~la~~l~-------~~~~~~v~~~~l~~--------------~~~g-~~~~~i~~~f~~a~ 311 (744)
.+.++++||||+|||++++.+++.+. ...+..++++...+ .... .+...+.+.+....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 45789999999999999999999874 33444554443321 0011 12223333333333
Q ss_pred hcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhcc
Q 004584 312 NDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKID 360 (744)
Q Consensus 312 ~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d 360 (744)
.... ..+|+|||+|.+. ....++.|...++
T Consensus 84 ~~~~-------~~~lviDe~~~l~------------~~~~l~~l~~l~~ 113 (131)
T PF13401_consen 84 DRRR-------VVLLVIDEADHLF------------SDEFLEFLRSLLN 113 (131)
T ss_dssp HHCT-------EEEEEEETTHHHH------------THHHHHHHHHHTC
T ss_pred HhcC-------CeEEEEeChHhcC------------CHHHHHHHHHHHh
Confidence 3221 2499999999974 1456666666655
No 440
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.22 E-value=4.4e-05 Score=77.26 Aligned_cols=164 Identities=17% Similarity=0.168 Sum_probs=93.2
Q ss_pred eeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhhccCCCCc
Q 004584 535 VTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGP 614 (744)
Q Consensus 535 ~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~~~g~ 614 (744)
.+..++||+|||||+.++.+|...|.+++.+++.+.+ ..+.+.++|.-+.... +++.|||+++|-..
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~-------~~~~l~ril~G~~~~G-aW~cfdefnrl~~~----- 99 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQM-------DYQSLSRILKGLAQSG-AWLCFDEFNRLSEE----- 99 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS--------HHHHHHHHHHHHHHT--EEEEETCCCSSHH-----
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccc-------cHHHHHHHHHHHhhcC-chhhhhhhhhhhHH-----
Confidence 4557899999999999999999999999999888754 2335788888876654 89999999998421
Q ss_pred chhHHHHH---HHHHHhccCCC----------CCCcEEEEEeCCCCC----CCCccccccccceEEEcCCCCHHHHHHHH
Q 004584 615 RFSNIISQ---TMLVLLKRLPP----------KGKKLLVIGTTSEVS----FLDSVGICDAFSVTYHVPTLKTDDAKKVL 677 (744)
Q Consensus 615 ~~~~~~~~---~Ll~~l~~~~~----------~~~~v~vi~~tn~~~----~l~~~~l~~rf~~~i~~p~~~~~~~~~Il 677 (744)
.-..+.+ .+...+..-.. -....-++.|.|... .+.+ .+ ..+-+.+.+-.|+...+.+++
T Consensus 100 -vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~-nL-k~lFRpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 100 -VLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPE-NL-KALFRPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp -HHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-H-HH-CTTEEEEE--S--HHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCH-hH-HHHhheeEEeCCCHHHHHHHH
Confidence 1122222 22222222110 011233444555322 1222 23 234468888889988888777
Q ss_pred HHccCCCHH-HHH-------HHHHhCC------CCcHHHHHHHHHHHHhcc
Q 004584 678 KQLNVFAEE-DVD-------SASEALN------DMPIKKLYMLIEMAAQGE 714 (744)
Q Consensus 678 ~~~~~~~~~-~~~-------~~~~~~~------~g~ir~l~~~l~~a~~~a 714 (744)
-...+|.+. .+. +++...- +.++|.+..++.+|....
T Consensus 177 L~s~GF~~a~~La~kl~~l~~l~~~~lS~q~hydfgLRalk~vl~~a~~~k 227 (231)
T PF12774_consen 177 LLSQGFKDAKSLAKKLVSLFQLCKEQLSKQDHYDFGLRALKSVLRMAGSLK 227 (231)
T ss_dssp HHCCCTSSHHHHHHHHHHHHHHHHHCS-SSTT---SHHHHHHHHHHHHHHH
T ss_pred HHHcCchhHHHHHHHHHHHHHHHHHhhccCccccccHHHHHHHHHHHHHHh
Confidence 765555543 322 2222221 688999999998888764
No 441
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.22 E-value=1.3e-05 Score=92.44 Aligned_cols=50 Identities=24% Similarity=0.478 Sum_probs=40.1
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhc
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN 279 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~ 279 (744)
|+..|++ |.|.++.++.+ ..++.. .++++|+||||||||++++++++.+.
T Consensus 26 ~~~~~~~--vigq~~a~~~L-~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 26 PERLIDQ--VIGQEHAVEVI-KKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred CcccHHH--cCChHHHHHHH-HHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 5567777 99999988877 554432 24799999999999999999998885
No 442
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.21 E-value=4.6e-05 Score=76.89 Aligned_cols=123 Identities=13% Similarity=0.137 Sum_probs=75.6
Q ss_pred CeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCC-------CCCccc----cccccceEE
Q 004584 595 LSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVS-------FLDSVG----ICDAFSVTY 663 (744)
Q Consensus 595 ~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~-------~l~~~~----l~~rf~~~i 663 (744)
|+||||||++.|- -.-...|...++. .... +++.+||+-- .-.|.+ +..|. .+|
T Consensus 289 pGVLFIDEvHMLD----------IEcFsFlNrAlE~---d~~P-iiimaTNrgit~iRGTn~~SphGiP~D~lDR~-lII 353 (454)
T KOG2680|consen 289 PGVLFIDEVHMLD----------IECFSFLNRALEN---DMAP-IIIMATNRGITRIRGTNYRSPHGIPIDLLDRM-LII 353 (454)
T ss_pred cceEEEeeehhhh----------hHHHHHHHHHhhh---ccCc-EEEEEcCCceEEeecCCCCCCCCCcHHHhhhh-hee
Confidence 7899999999873 1122223333322 1223 4455666521 112222 23443 367
Q ss_pred EcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHhCC-CCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHH
Q 004584 664 HVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALN-DMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCL 738 (744)
Q Consensus 664 ~~p~~~~~~~~~Il~~~----~~~~~~~~~~~~~~~~-~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al 738 (744)
.-.||+.+++.+||+.. +..-.++...++.... .-++|..++++..|...+..+ ....+..+|+..+.
T Consensus 354 ~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~kr-------k~~~v~~~di~r~y 426 (454)
T KOG2680|consen 354 STQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKR-------KGKVVEVDDIERVY 426 (454)
T ss_pred ecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHh-------cCceeehhHHHHHH
Confidence 88899999999999963 2334455555555554 788999999988887776543 44568888888776
Q ss_pred H
Q 004584 739 Q 739 (744)
Q Consensus 739 ~ 739 (744)
.
T Consensus 427 ~ 427 (454)
T KOG2680|consen 427 R 427 (454)
T ss_pred H
Confidence 6
No 443
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.21 E-value=2.8e-05 Score=77.53 Aligned_cols=181 Identities=19% Similarity=0.215 Sum_probs=110.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhcCCCcE--Eeccc-----chhcccc----cc--------hHHHHHHHHHHHHhccccc
Q 004584 257 MLLYGPPGTGKTLMARQIGKMLNGMEPK--IVNGP-----EVLSKFV----GE--------TEKNIRDLFADAENDQRTR 317 (744)
Q Consensus 257 iLL~GppGtGKT~lar~la~~l~~~~~~--~v~~~-----~l~~~~~----g~--------~~~~i~~~f~~a~~~~~~~ 317 (744)
+.++|+-|+|||+++|++...+++.... +++.+ .+...++ ++ .+..-+.+.+...+.
T Consensus 54 ~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g---- 129 (269)
T COG3267 54 LAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKG---- 129 (269)
T ss_pred EEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhC----
Confidence 5689999999999999888777543322 22222 1111111 11 111222233333222
Q ss_pred CCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCc-cchhhcC-CCccceEEE
Q 004584 318 GDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDM-LDEALLR-PGRLEVQVE 395 (744)
Q Consensus 318 ~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~-id~al~r-~gRf~~~i~ 395 (744)
+.|.++++||.+.+... ..+.+..|.+.-++....-.++.||-..-... --+.++. .-|++..|+
T Consensus 130 ---~r~v~l~vdEah~L~~~----------~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~ 196 (269)
T COG3267 130 ---KRPVVLMVDEAHDLNDS----------ALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIE 196 (269)
T ss_pred ---CCCeEEeehhHhhhChh----------HHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEe
Confidence 23689999999988521 22333333333333333335677764422111 1122221 118887789
Q ss_pred EcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 004584 396 ISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALN 455 (744)
Q Consensus 396 i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~ 455 (744)
+++.+.++-...++.+++.-.....+..+..+..+...+.| .++-+..+|..|...|..
T Consensus 197 l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~ 255 (269)
T COG3267 197 LPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYS 255 (269)
T ss_pred cCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHH
Confidence 99999998999999999887766667777788889999998 666788888888777764
No 444
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.20 E-value=5.1e-06 Score=94.00 Aligned_cols=176 Identities=21% Similarity=0.247 Sum_probs=95.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEecccchhcccccchHHHHHHHHHHHHhc-------ccccCCCCCeeE
Q 004584 255 KGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGETEKNIRDLFADAEND-------QRTRGDQSDLHV 325 (744)
Q Consensus 255 ~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~-------~~~~~~~~~p~I 325 (744)
.++|++|++||||+++|+++..... +.+++.++|..+.... .-..+|...... .+.........+
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 240 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESL------LESELFGHEKGAFTGAQTLRQGLFERANEGT 240 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHH------HHHHhcCCCCCCCCCCCCCCCCceEECCCCE
Confidence 4799999999999999999987653 3467788887653211 111222211000 000000011239
Q ss_pred EEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCc--c-------CCCcEEEEEEeCCCCccchhhcCCCccce----
Q 004584 326 IIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV--E-------SLNNVLLIGMTNRKDMLDEALLRPGRLEV---- 392 (744)
Q Consensus 326 l~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~--~-------~~~~v~vI~~tn~~~~id~al~r~gRf~~---- 392 (744)
|||||+|.+.+. +...|+..++.- . ...++.+|++|+..- ..+.+.|+|..
T Consensus 241 l~ld~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l---~~~~~~g~~~~~l~~ 304 (457)
T PRK11361 241 LLLDEIGEMPLV-------------LQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDL---QAMVKEGTFREDLFY 304 (457)
T ss_pred EEEechhhCCHH-------------HHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCH---HHHHHcCCchHHHHH
Confidence 999999998532 233344444321 1 113588999998642 12222333332
Q ss_pred ---EEEEcCCCHHHHHH----HHHHHHhccccc----CCCCCcccHHHHHHhcCCCChHHHHHHHHHHHHH
Q 004584 393 ---QVEISLPDENGRLQ----ILQIHTNKMKEN----SFLAPDVNLQELAARTKNYSGAELEGVAKSAVSF 452 (744)
Q Consensus 393 ---~i~i~~Pd~~~r~~----Il~~~~~~~~~~----~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~ 452 (744)
.+.+..|...+|.+ ++..++.+.... ..-..+..+..|....-.-+-++|+++++.|+..
T Consensus 305 ~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~ 375 (457)
T PRK11361 305 RLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVM 375 (457)
T ss_pred HhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHh
Confidence 35677777666643 334444433221 0112233345555555445779999999988754
No 445
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.19 E-value=2.9e-06 Score=79.12 Aligned_cols=88 Identities=24% Similarity=0.377 Sum_probs=53.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhcC--CCcEEecccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcC
Q 004584 253 HVKGMLLYGPPGTGKTLMARQIGKMLNG--MEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDE 330 (744)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~la~~l~~--~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDE 330 (744)
...+|||+|+|||||+++|+++...... .++..+++..+. .++++.+.. ..|||+|
T Consensus 20 ~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a~~-----------gtL~l~~ 77 (138)
T PF14532_consen 20 SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQAKG-----------GTLYLKN 77 (138)
T ss_dssp SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHCTT-----------SEEEEEC
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHcCC-----------CEEEECC
Confidence 3457999999999999999999987642 233444554322 345555422 3999999
Q ss_pred cchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCC
Q 004584 331 IDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNR 376 (744)
Q Consensus 331 id~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~ 376 (744)
+|.+.+ ..+..+..++... . ..++.+|+++..
T Consensus 78 i~~L~~----------~~Q~~L~~~l~~~---~-~~~~RlI~ss~~ 109 (138)
T PF14532_consen 78 IDRLSP----------EAQRRLLDLLKRQ---E-RSNVRLIASSSQ 109 (138)
T ss_dssp GCCS-H----------HHHHHHHHHHHHC---T-TTTSEEEEEECC
T ss_pred hHHCCH----------HHHHHHHHHHHhc---C-CCCeEEEEEeCC
Confidence 999852 1233333344332 2 345677777655
No 446
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.18 E-value=4.5e-05 Score=87.27 Aligned_cols=28 Identities=39% Similarity=0.478 Sum_probs=24.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHH
Q 004584 250 GIKHVKGMLLYGPPGTGKTLMARQIGKM 277 (744)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~la~~ 277 (744)
|++...-+|++|+||+|||+++..++..
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~ 54 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVN 54 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 5677788999999999999999987754
No 447
>PRK09183 transposase/IS protein; Provisional
Probab=98.18 E-value=3.7e-06 Score=87.02 Aligned_cols=103 Identities=21% Similarity=0.281 Sum_probs=58.9
Q ss_pred CceeeeeecCCCCChhHHHHHHHhh---cCCCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhhcc
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGID---SDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEY 609 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~---~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~ 609 (744)
...+++|+||||||||++|.+++.. .+.....+..++.+...........+..++.... ..+.+++|||++.+.
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~-~~~dlLiiDdlg~~~-- 177 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGV-MAPRLLIIDEIGYLP-- 177 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHh-cCCCEEEEcccccCC--
Confidence 3468999999999999999999754 3555555544443212111111123445565542 356799999998753
Q ss_pred CCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCC
Q 004584 610 VPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEV 647 (744)
Q Consensus 610 ~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~ 647 (744)
++....+.|+.+++..-.. .. +|.|||.+
T Consensus 178 ------~~~~~~~~lf~li~~r~~~-~s--~iiTsn~~ 206 (259)
T PRK09183 178 ------FSQEEANLFFQVIAKRYEK-GS--MILTSNLP 206 (259)
T ss_pred ------CChHHHHHHHHHHHHHHhc-Cc--EEEecCCC
Confidence 1223334455555443222 22 34477764
No 448
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=98.17 E-value=7.2e-05 Score=88.96 Aligned_cols=186 Identities=16% Similarity=0.182 Sum_probs=100.2
Q ss_pred CCCCceEEEEcCCCChHHHHH-HHHHHHhcCCCcEEecccchhcccccchHHHHHHHHHHHHhcccccCC-------CCC
Q 004584 251 IKHVKGMLLYGPPGTGKTLMA-RQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGD-------QSD 322 (744)
Q Consensus 251 ~~~~~giLL~GppGtGKT~la-r~la~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~-------~~~ 322 (744)
+...++++++||||+|||++. -++-+++ ...++.+|-+.. .+...+-..++.-...+|..|. .-.
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~-~~ev~~~Nfs~~------t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK 1563 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSEL-ITEVKYFNFSTC------TMTPSKLSVLERETEYYPNTGVVRLYPKPVVK 1563 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhh-heeeeEEeeccc------cCCHHHHHHHHhhceeeccCCeEEEccCcchh
Confidence 355689999999999999863 3444443 234444443211 2222233334444444443221 111
Q ss_pred eeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCc--------cCCCcEEEEEEeCCCCcc-----chhhcCCCc
Q 004584 323 LHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV--------ESLNNVLLIGMTNRKDML-----DEALLRPGR 389 (744)
Q Consensus 323 p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~--------~~~~~v~vI~~tn~~~~i-----d~al~r~gR 389 (744)
--|||.|||+ + |....-.. +..--.+.+|+.. +|+ ....++++.|++|++.+. +..+.| |
T Consensus 1564 ~lVLFcDeIn-L-p~~~~y~~--~~vI~FlR~l~e~-QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r--~ 1636 (3164)
T COG5245 1564 DLVLFCDEIN-L-PYGFEYYP--PTVIVFLRPLVER-QGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIR--K 1636 (3164)
T ss_pred heEEEeeccC-C-ccccccCC--CceEEeeHHHHHh-cccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhc--C
Confidence 2399999999 3 33222111 1001112233332 121 233579999999998764 345554 2
Q ss_pred cceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcc------------c-HHH-------HHHhcCCCChHHHHHHHHHH
Q 004584 390 LEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDV------------N-LQE-------LAARTKNYSGAELEGVAKSA 449 (744)
Q Consensus 390 f~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~------------~-l~~-------la~~t~g~sg~dl~~l~~~A 449 (744)
...+....|......+|.+.++.+.-. +.++. . ... -.+..-+|+|+||.++++..
T Consensus 1637 -~v~vf~~ype~~SL~~Iyea~l~~s~l---~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i 1712 (3164)
T COG5245 1637 -PVFVFCCYPELASLRNIYEAVLMGSYL---CFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAI 1712 (3164)
T ss_pred -ceEEEecCcchhhHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHH
Confidence 446888999999999999887654321 11010 0 000 01112579999999988876
Q ss_pred HHHHH
Q 004584 450 VSFAL 454 (744)
Q Consensus 450 ~~~a~ 454 (744)
..+|-
T Consensus 1713 ~~yae 1717 (3164)
T COG5245 1713 FGYAE 1717 (3164)
T ss_pred HhHHh
Confidence 55543
No 449
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.16 E-value=2.1e-05 Score=90.65 Aligned_cols=127 Identities=12% Similarity=0.222 Sum_probs=81.6
Q ss_pred CeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCC------------------CCCCcEEEEEeCCCC--CCCCccc
Q 004584 595 LSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP------------------PKGKKLLVIGTTSEV--SFLDSVG 654 (744)
Q Consensus 595 ~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~------------------~~~~~v~vi~~tn~~--~~l~~~~ 654 (744)
.++|||||++.|. ...++.|+..|+.-. +...++.||+++|.. ..+++ .
T Consensus 227 GGtL~LDei~~L~----------~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dp-d 295 (637)
T PRK13765 227 KGVLFIDEINTLD----------LESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHP-A 295 (637)
T ss_pred CcEEEEeChHhCC----------HHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhH-H
Confidence 3678888888873 456777777764311 112357888888874 24454 5
Q ss_pred cccccc---eEEEcCCCC---HHHHHHHHHHc----------cCCCHHHHHHHHHhCC---------CCcHHHHHHHHHH
Q 004584 655 ICDAFS---VTYHVPTLK---TDDAKKVLKQL----------NVFAEEDVDSASEALN---------DMPIKKLYMLIEM 709 (744)
Q Consensus 655 l~~rf~---~~i~~p~~~---~~~~~~Il~~~----------~~~~~~~~~~~~~~~~---------~g~ir~l~~~l~~ 709 (744)
+..||. ..++|..-. .+.+..+++.. ..++.+.+..++.+++ ....|++..+++.
T Consensus 296 L~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~ 375 (637)
T PRK13765 296 LRSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRV 375 (637)
T ss_pred HHHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHH
Confidence 667776 566666422 44444444421 2567777777776554 2447888899998
Q ss_pred HHhcccCCcccccccCCCCcchhhHHHHHH
Q 004584 710 AAQGEQGGAAEAIYSGREKIKISHFYDCLQ 739 (744)
Q Consensus 710 a~~~a~~~~~~a~~~g~~~It~e~~~~al~ 739 (744)
|...|.. .+...|+.+|+.+|+.
T Consensus 376 a~~~a~~-------~~~~~i~~~~v~~a~~ 398 (637)
T PRK13765 376 AGDIARS-------EGAELTTAEHVLEAKK 398 (637)
T ss_pred HHHHHHh-------hccceecHHHHHHHHH
Confidence 8877654 3667789999888765
No 450
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.16 E-value=1.6e-05 Score=90.30 Aligned_cols=179 Identities=19% Similarity=0.203 Sum_probs=99.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEecccchhcccccchHHHHHHHHHHHHhcc-------cccCCCCCe
Q 004584 253 HVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQ-------RTRGDQSDL 323 (744)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~-------~~~~~~~~p 323 (744)
...++++.|++|||||++|+++..... ..+++.++|..+... ..-..+|....... ...-.....
T Consensus 160 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~------~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~ 233 (469)
T PRK10923 160 SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKD------LIESELFGHEKGAFTGANTIRQGRFEQADG 233 (469)
T ss_pred cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHH------HHHHHhcCCCCCCCCCCCcCCCCCeeECCC
Confidence 345799999999999999999998763 357788999776321 11122222111000 000001112
Q ss_pred eEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCcc---------CCCcEEEEEEeCCCC-------ccchhhcCC
Q 004584 324 HVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE---------SLNNVLLIGMTNRKD-------MLDEALLRP 387 (744)
Q Consensus 324 ~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~---------~~~~v~vI~~tn~~~-------~id~al~r~ 387 (744)
..|||||+|.+.+ .+...|+..++.-. ...++.+|++|+..- .+.+.|..
T Consensus 234 Gtl~l~~i~~l~~-------------~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~- 299 (469)
T PRK10923 234 GTLFLDEIGDMPL-------------DVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH- 299 (469)
T ss_pred CEEEEeccccCCH-------------HHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH-
Confidence 3899999998852 23334444443211 123578999987641 23344444
Q ss_pred CccceEEEEcCCCHHHHH----HHHHHHHhccccc----CCCCCcccHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 004584 388 GRLEVQVEISLPDENGRL----QILQIHTNKMKEN----SFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFA 453 (744)
Q Consensus 388 gRf~~~i~i~~Pd~~~r~----~Il~~~~~~~~~~----~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a 453 (744)
|+. .+.+.+|...+|. .++..+++..... ..-..+..+..|.+..-.-+-++|+++++.++..+
T Consensus 300 -~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 300 -RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred -Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 553 2455556544444 3555554443211 11123334666666655557799999999987654
No 451
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.16 E-value=7.8e-06 Score=93.43 Aligned_cols=190 Identities=12% Similarity=0.132 Sum_probs=119.2
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhcCC--CEEEEcc---cccccccchhhH-h---h--HHHHHHHHHhcCCCeEEEEe
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDSDF--PFVKIIS---AESMIGLHESTK-C---A--QIVKVFEDAYKSPLSIIILD 601 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~~~--~~i~v~~---~~~~~g~~~~~~-~---~--~i~~if~~a~~~~~~il~iD 601 (744)
...+++|.|+.|++||++++.++..+.. ||+.+-- .+-++|-..-+. . . .-..++..| ..+|||||
T Consensus 24 ~~gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~A---h~GvL~lD 100 (584)
T PRK13406 24 GLGGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEA---DGGVLVLA 100 (584)
T ss_pred ccceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeec---cCCEEEec
Confidence 3478999999999999999999988654 7766521 122455321000 0 0 001122222 23799999
Q ss_pred ccchhhccCCCCcchhHHHHHHHHHHhccCC----------CCCCcEEEEEeCCCCCCC--CccccccccceEEEcCCCC
Q 004584 602 DIERLLEYVPIGPRFSNIISQTMLVLLKRLP----------PKGKKLLVIGTTSEVSFL--DSVGICDAFSVTYHVPTLK 669 (744)
Q Consensus 602 Eid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~----------~~~~~v~vi~~tn~~~~l--~~~~l~~rf~~~i~~p~~~ 669 (744)
|+..+ ...+++.|++-|+.-. ....++++||+.|..+.. -+..+..||+..+.++.++
T Consensus 101 e~n~~----------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~ 170 (584)
T PRK13406 101 MAERL----------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLA 170 (584)
T ss_pred CcccC----------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCC
Confidence 99886 4678888888876521 112367888874322111 1225679999999999888
Q ss_pred HHHHH-------HHHHH---c-c-CCCHHHHHHHHHhCC--CC-cHHHHHHHHHHHHhcccCCcccccccCCCCcchhhH
Q 004584 670 TDDAK-------KVLKQ---L-N-VFAEEDVDSASEALN--DM-PIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHF 734 (744)
Q Consensus 670 ~~~~~-------~Il~~---~-~-~~~~~~~~~~~~~~~--~g-~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~ 734 (744)
..+.. .|... + + ..+++.+..++.... +. +.|..+.+++.|...|. ..|+..|+.+|+
T Consensus 171 ~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~Aa-------L~Gr~~V~~~dv 243 (584)
T PRK13406 171 LRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAA-------LAGRTAVEEEDL 243 (584)
T ss_pred hHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHH-------HcCCCCCCHHHH
Confidence 54432 22222 1 1 233444444443322 43 67888888888888754 358999999999
Q ss_pred HHHHHHHh
Q 004584 735 YDCLQDMV 742 (744)
Q Consensus 735 ~~al~~~~ 742 (744)
.+|+.-++
T Consensus 244 ~~Aa~lvL 251 (584)
T PRK13406 244 ALAARLVL 251 (584)
T ss_pred HHHHHHHH
Confidence 99998664
No 452
>PF05729 NACHT: NACHT domain
Probab=98.16 E-value=1.4e-05 Score=76.60 Aligned_cols=141 Identities=20% Similarity=0.254 Sum_probs=73.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhcCCC--------cEEecccchhcc------------cccchHHHHHHHHHHHHhccc
Q 004584 256 GMLLYGPPGTGKTLMARQIGKMLNGME--------PKIVNGPEVLSK------------FVGETEKNIRDLFADAENDQR 315 (744)
Q Consensus 256 giLL~GppGtGKT~lar~la~~l~~~~--------~~~v~~~~l~~~------------~~g~~~~~i~~~f~~a~~~~~ 315 (744)
-++++|+||+|||++++.++..+.... ++.....+.... ........+...+......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-- 79 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEK-- 79 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHc--
Confidence 478999999999999999998884221 112222221110 0111111111212222211
Q ss_pred ccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCc--cchhhcCCCccceE
Q 004584 316 TRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDM--LDEALLRPGRLEVQ 393 (744)
Q Consensus 316 ~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~--id~al~r~gRf~~~ 393 (744)
....+|+||.+|.+....... ........+..++.. ....++.+|.++..... +...+.. ...
T Consensus 80 -----~~~~llilDglDE~~~~~~~~--~~~~~~~~l~~l~~~----~~~~~~~liit~r~~~~~~~~~~~~~----~~~ 144 (166)
T PF05729_consen 80 -----NKRVLLILDGLDELEEQDQSQ--ERQRLLDLLSQLLPQ----ALPPGVKLIITSRPRAFPDLRRRLKQ----AQI 144 (166)
T ss_pred -----CCceEEEEechHhcccchhhh--HHHHHHHHHHHHhhh----ccCCCCeEEEEEcCChHHHHHHhcCC----CcE
Confidence 235699999999987533220 001122233333332 11234445444443222 2222222 146
Q ss_pred EEEcCCCHHHHHHHHHHHHh
Q 004584 394 VEISLPDENGRLQILQIHTN 413 (744)
Q Consensus 394 i~i~~Pd~~~r~~Il~~~~~ 413 (744)
++++..++++..++++.+++
T Consensus 145 ~~l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 145 LELEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred EEECCCCHHHHHHHHHHHhh
Confidence 89999999999999988765
No 453
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.15 E-value=7.4e-06 Score=84.39 Aligned_cols=113 Identities=21% Similarity=0.262 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEcccccccc----cchhhHhhHHHHH
Q 004584 514 HIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIG----LHESTKCAQIVKV 586 (744)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~~~g----~~~~~~~~~i~~i 586 (744)
..+..+..+.+.+. ...+++|+||||+|||++|.+++++. |...+.+..++.+.- ...+.... ++
T Consensus 90 ~~l~~~~~~~~~~~-----~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~---~l 161 (254)
T COG1484 90 KALEDLASLVEFFE-----RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEE---KL 161 (254)
T ss_pred HHHHHHHHHHHHhc-----cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHH---HH
Confidence 34444444444443 56899999999999999999998764 666777766665411 11111111 12
Q ss_pred HHHHhcCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCC
Q 004584 587 FEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEV 647 (744)
Q Consensus 587 f~~a~~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~ 647 (744)
.+.. ....+|+|||+.... .+....+.+.+.+...... +.. |-|+|.+
T Consensus 162 ~~~l--~~~dlLIiDDlG~~~----~~~~~~~~~~q~I~~r~~~-----~~~--~~tsN~~ 209 (254)
T COG1484 162 LREL--KKVDLLIIDDIGYEP----FSQEEADLLFQLISRRYES-----RSL--IITSNLS 209 (254)
T ss_pred HHHh--hcCCEEEEecccCcc----CCHHHHHHHHHHHHHHHhh-----ccc--eeecCCC
Confidence 2222 235799999998753 2222234455544444332 122 5577765
No 454
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.14 E-value=1.3e-06 Score=85.38 Aligned_cols=24 Identities=42% Similarity=0.427 Sum_probs=19.3
Q ss_pred eeeeeecCCCCChhHHHHHHHhhc
Q 004584 535 VTCLLEGPSGSGKTALAATAGIDS 558 (744)
Q Consensus 535 ~~~Ll~GppG~GKT~la~~~a~~~ 558 (744)
.++||+||||||||++|+.+...+
T Consensus 23 h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 23 HHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp --EEEES-CCCTHHHHHHHHHHCS
T ss_pred CCeEEECCCCCCHHHHHHHHHHhC
Confidence 699999999999999999998653
No 455
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.13 E-value=1.5e-05 Score=90.39 Aligned_cols=201 Identities=17% Similarity=0.198 Sum_probs=105.6
Q ss_pred cCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEecccchhcccccc
Q 004584 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGE 298 (744)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~~~g~ 298 (744)
+.|......++++.+... .....++++.|.+||||+++|+++..... ..+++.++|..+.....
T Consensus 136 lig~s~~~~~v~~~i~~~------------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~-- 201 (463)
T TIGR01818 136 LIGEAPAMQEVFRAIGRL------------SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLI-- 201 (463)
T ss_pred eeecCHHHHHHHHHHHHH------------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHH--
Confidence 556666666664333221 12345799999999999999999988753 45778888876632111
Q ss_pred hHHHHHHHHHHHH-------hcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCc-----c---
Q 004584 299 TEKNIRDLFADAE-------NDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV-----E--- 363 (744)
Q Consensus 299 ~~~~i~~~f~~a~-------~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~-----~--- 363 (744)
-..+|.... ......-.......||||||+.+... +...|+..++.- .
T Consensus 202 ----~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~-------------~q~~ll~~l~~~~~~~~~~~~ 264 (463)
T TIGR01818 202 ----ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLD-------------AQTRLLRVLADGEFYRVGGRT 264 (463)
T ss_pred ----HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHH-------------HHHHHHHHHhcCcEEECCCCc
Confidence 111221100 00000000112348999999998522 223344333311 1
Q ss_pred -CCCcEEEEEEeCCCC-------ccchhhcCCCccc-eEEEEcCCC--HHHHHHHHHHHHhcccccC----CCCCcccHH
Q 004584 364 -SLNNVLLIGMTNRKD-------MLDEALLRPGRLE-VQVEISLPD--ENGRLQILQIHTNKMKENS----FLAPDVNLQ 428 (744)
Q Consensus 364 -~~~~v~vI~~tn~~~-------~id~al~r~gRf~-~~i~i~~Pd--~~~r~~Il~~~~~~~~~~~----~~~~~~~l~ 428 (744)
...++.+|++|+..- .+.+.|.. |+. ..|.+|+.. .++...++..+++...... ...++..+.
T Consensus 265 ~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~ 342 (463)
T TIGR01818 265 PIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALE 342 (463)
T ss_pred eeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHH
Confidence 112678899887642 12233333 333 244544443 3444555555554432211 112333455
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHH
Q 004584 429 ELAARTKNYSGAELEGVAKSAVSFAL 454 (744)
Q Consensus 429 ~la~~t~g~sg~dl~~l~~~A~~~a~ 454 (744)
.|....---+-++|+++++.|+..+.
T Consensus 343 ~L~~~~wpgNvreL~~~~~~~~~~~~ 368 (463)
T TIGR01818 343 RLKQLRWPGNVRQLENLCRWLTVMAS 368 (463)
T ss_pred HHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 55555433356999999999886553
No 456
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.13 E-value=9.4e-06 Score=85.84 Aligned_cols=72 Identities=19% Similarity=0.189 Sum_probs=46.0
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccchh
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERL 606 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l 606 (744)
...+++|+||+|||||++|.++|+++ +.+...+..++.+.-....-......+.++... ...+|+|||+..-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc
Confidence 45789999999999999999999875 566665655553311111000112334444443 3579999999764
No 457
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=8e-05 Score=78.31 Aligned_cols=149 Identities=12% Similarity=0.091 Sum_probs=93.8
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhcCC-------------CEEEEcccccccccchhhHhhHHHHHHHHHh-----cCCC
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDSDF-------------PFVKIISAESMIGLHESTKCAQIVKVFEDAY-----KSPL 595 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~~~-------------~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~-----~~~~ 595 (744)
....||+|+.|.||+.+|+.++...-+ +++.+. + .| ..-+.+.++++.+... .+..
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~---~g--~~i~vd~Ir~l~~~~~~~~~~~~~~ 91 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-I---FD--KDLSKSEFLSAINKLYFSSFVQSQK 91 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-c---CC--CcCCHHHHHHHHHHhccCCcccCCc
Confidence 345579999999999999999876411 122221 0 01 1122345666666552 1477
Q ss_pred eEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCCCCHHHHHH
Q 004584 596 SIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKK 675 (744)
Q Consensus 596 ~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~ 675 (744)
.|++||++|.+. ....++|+..|+.+|+ .+++|-+|+.++.+-+ .+++ .+..++|++++.+++..
T Consensus 92 KvvII~~~e~m~----------~~a~NaLLK~LEEPp~---~t~~il~~~~~~kll~-TI~S-Rc~~~~f~~l~~~~l~~ 156 (299)
T PRK07132 92 KILIIKNIEKTS----------NSLLNALLKTIEEPPK---DTYFLLTTKNINKVLP-TIVS-RCQVFNVKEPDQQKILA 156 (299)
T ss_pred eEEEEecccccC----------HHHHHHHHHHhhCCCC---CeEEEEEeCChHhChH-HHHh-CeEEEECCCCCHHHHHH
Confidence 899999998873 5677789999988643 3344444445544444 2333 45689999999999998
Q ss_pred HHHHccCCCHHHHHHHHHhCCCCcHHHHHHH
Q 004584 676 VLKQLNVFAEEDVDSASEALNDMPIKKLYML 706 (744)
Q Consensus 676 Il~~~~~~~~~~~~~~~~~~~~g~ir~l~~~ 706 (744)
.|...+ .+++...+++..+++ ..+++.+
T Consensus 157 ~l~~~~--~~~~~a~~~a~~~~~-~~~a~~~ 184 (299)
T PRK07132 157 KLLSKN--KEKEYNWFYAYIFSN-FEQAEKY 184 (299)
T ss_pred HHHHcC--CChhHHHHHHHHcCC-HHHHHHH
Confidence 888753 344445566666553 5544443
No 458
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=2.1e-05 Score=92.12 Aligned_cols=128 Identities=24% Similarity=0.356 Sum_probs=84.3
Q ss_pred cCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcC--CCcEEecccchh------
Q 004584 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG--MEPKIVNGPEVL------ 292 (744)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~--~~~~~v~~~~l~------ 292 (744)
|.|+++.+..| -+++..... .+... ++.-.+||.||.|+|||-+|+++|..+-+ ..++.++.+++.
T Consensus 564 V~gQ~eAv~aI-a~AI~~sr~--gl~~~---~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskli 637 (898)
T KOG1051|consen 564 VIGQDEAVAAI-AAAIRRSRA--GLKDP---NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLI 637 (898)
T ss_pred ccchHHHHHHH-HHHHHhhhc--ccCCC---CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhcc
Confidence 88999998888 455533321 11011 46677999999999999999999999843 345667777532
Q ss_pred c---ccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCcc------
Q 004584 293 S---KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE------ 363 (744)
Q Consensus 293 ~---~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~------ 363 (744)
+ .|.|..+- .++. ++-...| .+||+|||||.- +..+++.|+..+|..+
T Consensus 638 gsp~gyvG~e~g--g~Lt-eavrrrP-------~sVVLfdeIEkA-------------h~~v~n~llq~lD~GrltDs~G 694 (898)
T KOG1051|consen 638 GSPPGYVGKEEG--GQLT-EAVKRRP-------YSVVLFEEIEKA-------------HPDVLNILLQLLDRGRLTDSHG 694 (898)
T ss_pred CCCcccccchhH--HHHH-HHHhcCC-------ceEEEEechhhc-------------CHHHHHHHHHHHhcCccccCCC
Confidence 2 35665542 2344 4444443 579999999963 3456676666666422
Q ss_pred ---CCCcEEEEEEeCCC
Q 004584 364 ---SLNNVLLIGMTNRK 377 (744)
Q Consensus 364 ---~~~~v~vI~~tn~~ 377 (744)
+..|++||.|+|.-
T Consensus 695 r~Vd~kN~I~IMTsn~~ 711 (898)
T KOG1051|consen 695 REVDFKNAIFIMTSNVG 711 (898)
T ss_pred cEeeccceEEEEecccc
Confidence 23478999998874
No 459
>PRK06921 hypothetical protein; Provisional
Probab=98.09 E-value=2e-05 Score=81.90 Aligned_cols=123 Identities=20% Similarity=0.244 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhc----CCCEEEEcccccccccchhhHhhHHHHHHHH
Q 004584 514 HIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS----DFPFVKIISAESMIGLHESTKCAQIVKVFED 589 (744)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~----~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~ 589 (744)
.+......+++.+.........+++|+||||+|||+++.++|++. +...+.+...+.+ ..... ......+.++.
T Consensus 97 ~~~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~-~~l~~-~~~~~~~~~~~ 174 (266)
T PRK06921 97 DAYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGF-GDLKD-DFDLLEAKLNR 174 (266)
T ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHH-HHHHH-HHHHHHHHHHH
Confidence 444455556665544333446789999999999999999999764 4555555433321 11100 00112222333
Q ss_pred HhcCCCeEEEEeccch-hhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCC
Q 004584 590 AYKSPLSIIILDDIER-LLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSE 646 (744)
Q Consensus 590 a~~~~~~il~iDEid~-l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~ 646 (744)
. ....+|+|||++. +.+. ...++.....|..+++..-..+.. +|| |||.
T Consensus 175 ~--~~~dlLiIDDl~~~~~g~----e~~t~~~~~~lf~iin~R~~~~k~-tIi-tsn~ 224 (266)
T PRK06921 175 M--KKVEVLFIDDLFKPVNGK----PRATEWQIEQMYSVLNYRYLNHKP-ILI-SSEL 224 (266)
T ss_pred h--cCCCEEEEeccccccCCC----ccCCHHHHHHHHHHHHHHHHCCCC-EEE-ECCC
Confidence 2 2357999999954 2111 112333344555555543222222 444 6664
No 460
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.08 E-value=1e-05 Score=82.46 Aligned_cols=88 Identities=19% Similarity=0.314 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEcccccccccch--hhHhhHHHHHHH
Q 004584 514 HIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIGLHE--STKCAQIVKVFE 588 (744)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~~~g~~~--~~~~~~i~~if~ 588 (744)
.++..+..+.+... ....+++|+|+||||||+++.++|+.. +..++.+..++.+..... ........++++
T Consensus 83 ~al~~a~~~~~~~~----~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~ 158 (244)
T PRK07952 83 NALSKARQYVEEFD----GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLN 158 (244)
T ss_pred HHHHHHHHHHHhhc----cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHH
Confidence 45555555554432 123589999999999999999999765 555555544443211000 000112234454
Q ss_pred HHhcCCCeEEEEeccchhh
Q 004584 589 DAYKSPLSIIILDDIERLL 607 (744)
Q Consensus 589 ~a~~~~~~il~iDEid~l~ 607 (744)
... ...+|+|||++...
T Consensus 159 ~l~--~~dlLvIDDig~~~ 175 (244)
T PRK07952 159 DLS--NVDLLVIDEIGVQT 175 (244)
T ss_pred Hhc--cCCEEEEeCCCCCC
Confidence 443 46899999998863
No 461
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.08 E-value=3.3e-05 Score=80.19 Aligned_cols=124 Identities=12% Similarity=0.147 Sum_probs=83.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhcCCCcE-------Eecccchhccc-cc----chHHHHHHHHHHHHhcccccCCCC
Q 004584 254 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPK-------IVNGPEVLSKF-VG----ETEKNIRDLFADAENDQRTRGDQS 321 (744)
Q Consensus 254 ~~giLL~GppGtGKT~lar~la~~l~~~~~~-------~v~~~~l~~~~-~g----~~~~~i~~~f~~a~~~~~~~~~~~ 321 (744)
+..+||+||+|+||+.+|.++|+.+.|..-- .-+-+++.--+ .| -.-..+|++.+.+... |.. +
T Consensus 19 ~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~-p~e---~ 94 (290)
T PRK05917 19 PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIH-PYE---S 94 (290)
T ss_pred CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhC-ccC---C
Confidence 4579999999999999999999998653100 00112221100 11 1244566666555433 222 2
Q ss_pred CeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCC
Q 004584 322 DLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLP 399 (744)
Q Consensus 322 ~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~P 399 (744)
...|++||++|.+. ....+.||+.++ ++..++++|..|+.++.+.|.+++ |+. .+.|+++
T Consensus 95 ~~kv~ii~~ad~mt-------------~~AaNaLLK~LE--EPp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 95 PYKIYIIHEADRMT-------------LDAISAFLKVLE--DPPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred CceEEEEechhhcC-------------HHHHHHHHHHhh--cCCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 34599999999874 346678999988 466789999999999999999998 755 4566554
No 462
>PRK15115 response regulator GlrR; Provisional
Probab=98.06 E-value=3.6e-05 Score=86.75 Aligned_cols=177 Identities=18% Similarity=0.205 Sum_probs=99.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEecccchhcccccchHHHHHHHHHHHHhc-------ccccCCCCCee
Q 004584 254 VKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGETEKNIRDLFADAEND-------QRTRGDQSDLH 324 (744)
Q Consensus 254 ~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~-------~~~~~~~~~p~ 324 (744)
...++++|++|||||++|+++.+... ..+++.++|..+.... .-..+|..+... ...........
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 230 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQL------LESELFGHARGAFTGAVSNREGLFQAAEGG 230 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHH------HHHHhcCCCcCCCCCCccCCCCcEEECCCC
Confidence 34699999999999999999988763 3577888887653211 111233221110 00000011123
Q ss_pred EEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCcc---------CCCcEEEEEEeCCCCccchhhcCCCccc----
Q 004584 325 VIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE---------SLNNVLLIGMTNRKDMLDEALLRPGRLE---- 391 (744)
Q Consensus 325 Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~---------~~~~v~vI~~tn~~~~id~al~r~gRf~---- 391 (744)
.|||||+|.|.+. ....|+..++.-. ...++.+|++|+.. ++..+. .|+|.
T Consensus 231 tl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~-~~~f~~~l~ 294 (444)
T PRK15115 231 TLFLDEIGDMPAP-------------LQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMA-RGEFREDLY 294 (444)
T ss_pred EEEEEccccCCHH-------------HHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHH-cCCccHHHH
Confidence 9999999998532 2333444443211 11268999998863 333332 34441
Q ss_pred ---eEEEEcCCCHHHHHH----HHHHHHhcccc----cCCCCCcccHHHHHHhcCCCChHHHHHHHHHHHHH
Q 004584 392 ---VQVEISLPDENGRLQ----ILQIHTNKMKE----NSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSF 452 (744)
Q Consensus 392 ---~~i~i~~Pd~~~r~~----Il~~~~~~~~~----~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~ 452 (744)
..+.|.+|...+|.+ +++.+++.+.. ...-.++..+..|....-.-+.++|+++++.|+..
T Consensus 295 ~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred HhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 135666777766643 34444444321 11112344566677666455789999999998754
No 463
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.06 E-value=2e-06 Score=83.77 Aligned_cols=102 Identities=20% Similarity=0.298 Sum_probs=54.8
Q ss_pred CceeeeeecCCCCChhHHHHHHHhh---cCCCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhhcc
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGID---SDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEY 609 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~---~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~ 609 (744)
...+++|+||||+|||++|.+++++ .+.....+..++.+.............+.++.... ..+|+|||+....
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~--~dlLilDDlG~~~-- 121 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR--VDLLILDDLGYEP-- 121 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT--SSCEEEETCTSS---
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc--ccEecccccceee--
Confidence 4578999999999999999999864 46666666666543111100001112334444432 4789999997532
Q ss_pred CCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCC
Q 004584 610 VPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEV 647 (744)
Q Consensus 610 ~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~ 647 (744)
.++...+.|..+++..-. ++-.|| |||..
T Consensus 122 ------~~~~~~~~l~~ii~~R~~--~~~tIi-TSN~~ 150 (178)
T PF01695_consen 122 ------LSEWEAELLFEIIDERYE--RKPTII-TSNLS 150 (178)
T ss_dssp --------HHHHHCTHHHHHHHHH--T-EEEE-EESS-
T ss_pred ------ecccccccchhhhhHhhc--ccCeEe-eCCCc
Confidence 233444455555554322 233444 77753
No 464
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.03 E-value=1.3e-05 Score=85.36 Aligned_cols=118 Identities=15% Similarity=0.241 Sum_probs=65.9
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEcccccccccchhh---HhhHHHH
Q 004584 512 HKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIGLHEST---KCAQIVK 585 (744)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~~~g~~~~~---~~~~i~~ 585 (744)
...+.+.+..+++.+.. ...+++|+||||+|||++|.++|++. +..++.+..++.+ ...... .......
T Consensus 165 ~~~~~~~~~~f~~~f~~----~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~-~~l~~~~~~~~~~~~~ 239 (329)
T PRK06835 165 MEKILEKCKNFIENFDK----NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELI-EILREIRFNNDKELEE 239 (329)
T ss_pred HHHHHHHHHHHHHHHhc----cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHH-HHHHHHHhccchhHHH
Confidence 33455556666665543 22789999999999999999999764 5566666554432 111000 0001111
Q ss_pred HHHHHhcCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCC
Q 004584 586 VFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSE 646 (744)
Q Consensus 586 if~~a~~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~ 646 (744)
.++... ...+|+|||+.... ......+.|..+++..-..+ +-+|| |||.
T Consensus 240 ~~~~l~--~~DLLIIDDlG~e~--------~t~~~~~~Lf~iin~R~~~~-k~tIi-TSNl 288 (329)
T PRK06835 240 VYDLLI--NCDLLIIDDLGTEK--------ITEFSKSELFNLINKRLLRQ-KKMII-STNL 288 (329)
T ss_pred HHHHhc--cCCEEEEeccCCCC--------CCHHHHHHHHHHHHHHHHCC-CCEEE-ECCC
Confidence 233332 34799999997753 12344455666665542222 22444 6664
No 465
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.02 E-value=3.2e-05 Score=77.69 Aligned_cols=84 Identities=26% Similarity=0.302 Sum_probs=54.0
Q ss_pred HHHHHhcCCCCceeeeeecCCCCChhHHHHHHH------hhcCCCEEEEcccccccccch-hhHhhHHHHHHHHHh----
Q 004584 523 VEQVKVSKGSPLVTCLLEGPSGSGKTALAATAG------IDSDFPFVKIISAESMIGLHE-STKCAQIVKVFEDAY---- 591 (744)
Q Consensus 523 ~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a------~~~~~~~i~v~~~~~~~g~~~-~~~~~~i~~if~~a~---- 591 (744)
++++.+........+||.||+|.||+.+|+.+- +....+|+.++|+.+ .|... +.....++..|..|+
T Consensus 197 ieqierva~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatl-rgd~amsalfghvkgaftga~~~r~ 275 (531)
T COG4650 197 IEQIERVAIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATL-RGDTAMSALFGHVKGAFTGARESRE 275 (531)
T ss_pred HHHHHHHHhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeee-cCchHHHHHHhhhccccccchhhhh
Confidence 334444334445669999999999999999875 345779999999874 33221 112223334443332
Q ss_pred ----cCCCeEEEEeccchhh
Q 004584 592 ----KSPLSIIILDDIERLL 607 (744)
Q Consensus 592 ----~~~~~il~iDEid~l~ 607 (744)
....+++|+|||..|.
T Consensus 276 gllrsadggmlfldeigelg 295 (531)
T COG4650 276 GLLRSADGGMLFLDEIGELG 295 (531)
T ss_pred hhhccCCCceEehHhhhhcC
Confidence 2345799999999874
No 466
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.02 E-value=0.00015 Score=73.39 Aligned_cols=91 Identities=18% Similarity=0.072 Sum_probs=60.7
Q ss_pred CCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Q 004584 377 KDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNR 456 (744)
Q Consensus 377 ~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r 456 (744)
|..||-.|+. |.- .|.-.+++.++..+||++.+..-.. ...+..++.|......-+-+--..|+..|...|.+|
T Consensus 339 phGiP~D~lD--R~l-II~t~py~~~d~~~IL~iRc~EEdv---~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~kr 412 (454)
T KOG2680|consen 339 PHGIPIDLLD--RML-IISTQPYTEEDIKKILRIRCQEEDV---EMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKR 412 (454)
T ss_pred CCCCcHHHhh--hhh-eeecccCcHHHHHHHHHhhhhhhcc---ccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 4556777776 643 5677788999999999998764321 122334566666666556677777888888888876
Q ss_pred ccccCCCCCCCccccceeehhHHHHHHhhh
Q 004584 457 QLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (744)
Q Consensus 457 ~~~~~~~~~~~~~~~~~it~~df~~al~~~ 486 (744)
. ...+..+|+..+..-+
T Consensus 413 k-------------~~~v~~~di~r~y~LF 429 (454)
T KOG2680|consen 413 K-------------GKVVEVDDIERVYRLF 429 (454)
T ss_pred c-------------CceeehhHHHHHHHHH
Confidence 4 2356677777766543
No 467
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.02 E-value=3.5e-05 Score=77.95 Aligned_cols=126 Identities=25% Similarity=0.328 Sum_probs=73.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhcccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcch
Q 004584 254 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDA 333 (744)
Q Consensus 254 ~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~ 333 (744)
..+-.++||+|||||.+++.+|+.+ +.+++..+|.+-++ ...+.++|.-+.... +++++||++.
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~l-G~~~~vfnc~~~~~------~~~l~ril~G~~~~G---------aW~cfdefnr 95 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARAL-GRFVVVFNCSEQMD------YQSLSRILKGLAQSG---------AWLCFDEFNR 95 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCT-T--EEEEETTSSS-------HHHHHHHHHHHHHHT----------EEEEETCCC
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHh-CCeEEEeccccccc------HHHHHHHHHHHhhcC---------chhhhhhhhh
Confidence 3567899999999999999999999 68888889886543 356777776665542 5999999998
Q ss_pred hcccCCCCCCCCccHHHHHHHHHHhc-cCcc--------------CCCcEEEEEEeCC----CCccchhhcCCCccceEE
Q 004584 334 ICKSRGSTRDGTGVHDSIVNQLLTKI-DGVE--------------SLNNVLLIGMTNR----KDMLDEALLRPGRLEVQV 394 (744)
Q Consensus 334 l~~~~~~~~~~~~~~~~~~~~LL~~~-d~~~--------------~~~~v~vI~~tn~----~~~id~al~r~gRf~~~i 394 (744)
|-. ++. +++.+.+..+ +.+. -..+.-+..+.|. ...+|+.++. +-+-+
T Consensus 96 l~~---------~vL-S~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~---lFRpv 162 (231)
T PF12774_consen 96 LSE---------EVL-SVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA---LFRPV 162 (231)
T ss_dssp SSH---------HHH-HHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT---TEEEE
T ss_pred hhH---------HHH-HHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH---Hhhee
Confidence 842 122 2222222222 1111 1123445556663 3468888886 33478
Q ss_pred EEcCCCHHHHHHHH
Q 004584 395 EISLPDENGRLQIL 408 (744)
Q Consensus 395 ~i~~Pd~~~r~~Il 408 (744)
.+..||.....+++
T Consensus 163 am~~PD~~~I~ei~ 176 (231)
T PF12774_consen 163 AMMVPDLSLIAEIL 176 (231)
T ss_dssp E--S--HHHHHHHH
T ss_pred EEeCCCHHHHHHHH
Confidence 89999987555554
No 468
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=2.2e-05 Score=84.93 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=28.1
Q ss_pred CCcHHHHHHHHHHHHhcccCCcccccccCCCCcchhhHHHHHH
Q 004584 697 DMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 739 (744)
Q Consensus 697 ~g~ir~l~~~l~~a~~~a~~~~~~a~~~g~~~It~e~~~~al~ 739 (744)
..++|..-.++..|...|+- +|...|...|+.+|+.
T Consensus 448 ~lS~R~~~rILKvarTiADL-------~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 448 GLSARAYHRILKVARTIADL-------EGSEQIERSHLAEAIS 483 (490)
T ss_pred chhHHHHHHHHHHHhhhhcc-------cCcchhhHHHHHHHHh
Confidence 56677777777777777654 4788899999999986
No 469
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.99 E-value=4.6e-05 Score=77.44 Aligned_cols=127 Identities=13% Similarity=0.080 Sum_probs=83.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE-------------Eecccchhcccc---cchHHHHHHHHHHHHhccc
Q 004584 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK-------------IVNGPEVLSKFV---GETEKNIRDLFADAENDQR 315 (744)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~la~~l~~~~~~-------------~v~~~~l~~~~~---g~~~~~i~~~f~~a~~~~~ 315 (744)
..+..+||+||+|+||..+|.++|+.+-+..-. .-+-+++.--+. .-....+|++-+.......
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 346689999999999999999999988543210 001122211110 1123445555544432211
Q ss_pred ccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEE
Q 004584 316 TRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVE 395 (744)
Q Consensus 316 ~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~ 395 (744)
.. ++..|++|+++|.+. ....+.||..++ ++..++++|..|+.++.+.|.+++ |.. .+.
T Consensus 85 e~---~~~KV~II~~ae~m~-------------~~AaNaLLK~LE--EPp~~t~fiLit~~~~~lLpTI~S--RCq-~~~ 143 (261)
T PRK05818 85 ES---NGKKIYIIYGIEKLN-------------KQSANSLLKLIE--EPPKNTYGIFTTRNENNILNTILS--RCV-QYV 143 (261)
T ss_pred hc---CCCEEEEeccHhhhC-------------HHHHHHHHHhhc--CCCCCeEEEEEECChHhCchHhhh--hee-eee
Confidence 11 123599999999874 456788999998 566789999999999999999999 864 355
Q ss_pred EcCC
Q 004584 396 ISLP 399 (744)
Q Consensus 396 i~~P 399 (744)
++.+
T Consensus 144 ~~~~ 147 (261)
T PRK05818 144 VLSK 147 (261)
T ss_pred cCCh
Confidence 6555
No 470
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.99 E-value=1.5e-05 Score=84.63 Aligned_cols=79 Identities=15% Similarity=0.225 Sum_probs=54.3
Q ss_pred cCchHHHHHHHHHHHHhccCCChhHHhHhCCC-CCceEEEEcCCCChHHHHHHHHHHHhcCC------CcEEecc----c
Q 004584 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIK-HVKGMLLYGPPGTGKTLMARQIGKMLNGM------EPKIVNG----P 289 (744)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~-~~~giLL~GppGtGKT~lar~la~~l~~~------~~~~v~~----~ 289 (744)
+-|+++.+.+++. .+.... .|.. ..+.++|+||||||||++|+++++.++.. +++.+.+ +
T Consensus 53 ~~G~~~~i~~lv~-~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~s 123 (361)
T smart00763 53 FFGMEEAIERFVN-YFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEES 123 (361)
T ss_pred ccCcHHHHHHHHH-HHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCC
Confidence 9999999999853 332221 1222 34678999999999999999999999643 6666766 4
Q ss_pred chhcccccchHHHHHHHHH
Q 004584 290 EVLSKFVGETEKNIRDLFA 308 (744)
Q Consensus 290 ~l~~~~~g~~~~~i~~~f~ 308 (744)
.+....++-.....|..|.
T Consensus 124 p~~e~Pl~l~p~~~r~~~~ 142 (361)
T smart00763 124 PMHEDPLHLFPDELREDLE 142 (361)
T ss_pred CCccCCcccCCHHHHHHHH
Confidence 4444444545555666653
No 471
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=7.7e-05 Score=77.51 Aligned_cols=123 Identities=18% Similarity=0.146 Sum_probs=76.6
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhcCCCE--------EEEccccccc----ccchhhHhhHHHHHHHHHh----cCCC
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFPF--------VKIISAESMI----GLHESTKCAQIVKVFEDAY----KSPL 595 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~--------i~v~~~~~~~----g~~~~~~~~~i~~if~~a~----~~~~ 595 (744)
.-+...||+||+|+||+.+|.++|...-+.- -.-.-|+... |....-+.+.++++.+.+. .++.
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 3445678999999999999999986542210 0001122211 1110113456777666654 3556
Q ss_pred eEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCCCC
Q 004584 596 SIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLK 669 (744)
Q Consensus 596 ~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~~ 669 (744)
.|++||++|.+. ....++|+..|+..++ ++++|-.|+.++.+-+ -+++| +..++|+++.
T Consensus 97 kv~ii~~ad~mt----------~~AaNaLLK~LEEPp~---~~~fiL~~~~~~~ll~-TI~SR-cq~~~~~~~~ 155 (290)
T PRK05917 97 KIYIIHEADRMT----------LDAISAFLKVLEDPPQ---HGVIILTSAKPQRLPP-TIRSR-SLSIHIPMEE 155 (290)
T ss_pred eEEEEechhhcC----------HHHHHHHHHHhhcCCC---CeEEEEEeCChhhCcH-HHHhc-ceEEEccchh
Confidence 899999999984 6678889999888543 4555556666665555 34444 4577888653
No 472
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.97 E-value=5.7e-05 Score=77.80 Aligned_cols=166 Identities=18% Similarity=0.303 Sum_probs=99.6
Q ss_pred cCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHh--cCCCcEEe--cccchh----
Q 004584 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIV--NGPEVL---- 292 (744)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l--~~~~~~~v--~~~~l~---- 292 (744)
+-|+.++-+.+ .+++.....+ .....+++.||.|+|||++.-...... .+..++.+ ||.-..
T Consensus 26 l~g~~~~~~~l-~~~lkqt~~~---------gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 26 LFGVQDEQKHL-SELLKQTILH---------GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred eeehHHHHHHH-HHHHHHHHHh---------cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 55665555555 4444322222 234579999999999998776554431 23334332 332111
Q ss_pred ---------------cccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHH
Q 004584 293 ---------------SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLT 357 (744)
Q Consensus 293 ---------------~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~ 357 (744)
.+-.|....++..+........ ...+.+.|.++||+|.+++. ..+.++..|..
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~---~~t~~~ViFIldEfDlf~~h---------~rQtllYnlfD 163 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGD---ETTSGKVIFILDEFDLFAPH---------SRQTLLYNLFD 163 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCC---CCCCceEEEEeehhhccccc---------hhhHHHHHHHH
Confidence 1334555556666666555422 22344667778899998743 23445666665
Q ss_pred hccCccCCCcEEEEEEeCCCCc---cchhhcCCCccceE-EEEcCC-CHHHHHHHHHHHH
Q 004584 358 KIDGVESLNNVLLIGMTNRKDM---LDEALLRPGRLEVQ-VEISLP-DENGRLQILQIHT 412 (744)
Q Consensus 358 ~~d~~~~~~~v~vI~~tn~~~~---id~al~r~gRf~~~-i~i~~P-d~~~r~~Il~~~~ 412 (744)
.-+ ..+.++.|||.|.+.+- +.....+ ||... |.++++ ...+-.++++..+
T Consensus 164 isq--s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 164 ISQ--SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHh--hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 544 34568999999998765 4677777 99877 665544 4566777777665
No 473
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.97 E-value=8.7e-05 Score=78.31 Aligned_cols=138 Identities=18% Similarity=0.154 Sum_probs=71.9
Q ss_pred HHHHHhcCCCCceeeeeecCCCCChhHHHHHHHhh--c--CCCE---EEEcccccc----------cccc------hhhH
Q 004584 523 VEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGID--S--DFPF---VKIISAESM----------IGLH------ESTK 579 (744)
Q Consensus 523 ~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~--~--~~~~---i~v~~~~~~----------~g~~------~~~~ 579 (744)
.+.+.... .....+.|+|++|+|||++|+.++.. . .+.. +.+...... ++.. ....
T Consensus 9 ~~~L~~~~-~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 87 (287)
T PF00931_consen 9 KDWLLDNS-NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDI 87 (287)
T ss_dssp HHHHHTTT-TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSH
T ss_pred HHHhhCCC-CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 33444333 66788999999999999999999966 2 2332 222211110 1111 1112
Q ss_pred hhHHHHHHHHHhcCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCcccccccc
Q 004584 580 CAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAF 659 (744)
Q Consensus 580 ~~~i~~if~~a~~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf 659 (744)
......+.+ .-+..+++|+||+++... ..+.+...+.. ...+.-||.||......... +.-
T Consensus 88 ~~~~~~l~~-~L~~~~~LlVlDdv~~~~------------~~~~l~~~~~~---~~~~~kilvTTR~~~v~~~~---~~~ 148 (287)
T PF00931_consen 88 EELQDQLRE-LLKDKRCLLVLDDVWDEE------------DLEELREPLPS---FSSGSKILVTTRDRSVAGSL---GGT 148 (287)
T ss_dssp HHHHHHHHH-HHCCTSEEEEEEEE-SHH------------HH-------HC---HHSS-EEEEEESCGGGGTTH---HSC
T ss_pred ccccccchh-hhccccceeeeeeecccc------------ccccccccccc---cccccccccccccccccccc---ccc
Confidence 222333333 334458999999998753 22222222221 11233455577654333221 112
Q ss_pred ceEEEcCCCCHHHHHHHHHHc
Q 004584 660 SVTYHVPTLKTDDAKKVLKQL 680 (744)
Q Consensus 660 ~~~i~~p~~~~~~~~~Il~~~ 680 (744)
...+++++++.++-.+++.+.
T Consensus 149 ~~~~~l~~L~~~ea~~L~~~~ 169 (287)
T PF00931_consen 149 DKVIELEPLSEEEALELFKKR 169 (287)
T ss_dssp EEEEECSS--HHHHHHHHHHH
T ss_pred ccccccccccccccccccccc
Confidence 578999999999999999975
No 474
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.97 E-value=4.5e-05 Score=78.52 Aligned_cols=160 Identities=21% Similarity=0.259 Sum_probs=95.4
Q ss_pred eeecCcchhhHHHHHHHHHHHHHhcCCCCceeeeeecCCCCChhHHHHH-HH--hhcCCCEEEE--cccccc--------
Q 004584 505 MVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAAT-AG--IDSDFPFVKI--ISAESM-------- 571 (744)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~-~a--~~~~~~~i~v--~~~~~~-------- 571 (744)
+.++.++..++-+++++-+.. +-..++++.||.|+|||.+... ++ .+.+-+|+-+ ++--..
T Consensus 26 l~g~~~~~~~l~~~lkqt~~~------gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTILH------GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred eeehHHHHHHHHHHHHHHHHh------cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHH
Confidence 444555555555555544433 3457899999999999976433 33 3556565444 221110
Q ss_pred ----------cccchhhHhhHHHHHHHHHhc-----CCCeEEEEeccchhhccCCCCcchhHHHHHH-HHHHhccCCCCC
Q 004584 572 ----------IGLHESTKCAQIVKVFEDAYK-----SPLSIIILDDIERLLEYVPIGPRFSNIISQT-MLVLLKRLPPKG 635 (744)
Q Consensus 572 ----------~g~~~~~~~~~i~~if~~a~~-----~~~~il~iDEid~l~~~~~~g~~~~~~~~~~-Ll~~l~~~~~~~ 635 (744)
.+.+.+...+++.+++....+ +.+-|.++||||-.++. ..|+ |..+++-.....
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h----------~rQtllYnlfDisqs~r 169 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPH----------SRQTLLYNLFDISQSAR 169 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccc----------hhhHHHHHHHHHHhhcC
Confidence 123333344455555554432 22234556899987632 2233 345555444456
Q ss_pred CcEEEEEeCCCCCCCCccccc--cccceE-EEcCC-CCHHHHHHHHHHc
Q 004584 636 KKLLVIGTTSEVSFLDSVGIC--DAFSVT-YHVPT-LKTDDAKKVLKQL 680 (744)
Q Consensus 636 ~~v~vi~~tn~~~~l~~~~l~--~rf~~~-i~~p~-~~~~~~~~Il~~~ 680 (744)
..+.|||-|.+.+.++....| +||... |++++ ...++..++++..
T Consensus 170 ~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~l 218 (408)
T KOG2228|consen 170 APICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKL 218 (408)
T ss_pred CCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHH
Confidence 689999999999988766444 999855 55554 4589999999975
No 475
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.95 E-value=2.1e-05 Score=85.00 Aligned_cols=103 Identities=21% Similarity=0.357 Sum_probs=59.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhcccccc------hHHHHHHHHHHHHhcccccCCCCCee
Q 004584 251 IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGE------TEKNIRDLFADAENDQRTRGDQSDLH 324 (744)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~------~~~~i~~~f~~a~~~~~~~~~~~~p~ 324 (744)
..+|+|+.||||+|+|||+|.-.+.+.+....-..+.-.+++...... ....+..+.+..... ..
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~---------~~ 129 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKE---------SR 129 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhc---------CC
Confidence 467999999999999999999999988753222222222333211110 011122333222222 23
Q ss_pred EEEEcCcchhcccCCCCCCCCccHH-HHHHHHHHhccCccCCCcEEEEEEeCCC
Q 004584 325 VIIFDEIDAICKSRGSTRDGTGVHD-SIVNQLLTKIDGVESLNNVLLIGMTNRK 377 (744)
Q Consensus 325 Il~iDEid~l~~~~~~~~~~~~~~~-~~~~~LL~~~d~~~~~~~v~vI~~tn~~ 377 (744)
+|+|||++.- .+.+ -++..|+..+= ..++++|+|+|++
T Consensus 130 lLcfDEF~V~-----------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 130 LLCFDEFQVT-----------DIADAMILKRLFEALF----KRGVVLVATSNRP 168 (362)
T ss_pred EEEEeeeecc-----------chhHHHHHHHHHHHHH----HCCCEEEecCCCC
Confidence 9999999852 1122 23344444321 2489999999996
No 476
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.94 E-value=0.00015 Score=76.56 Aligned_cols=157 Identities=14% Similarity=0.133 Sum_probs=80.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHH--hcCCC--cEEecccchh------c----c---c------ccchHHHHHHHHH
Q 004584 252 KHVKGMLLYGPPGTGKTLMARQIGKM--LNGME--PKIVNGPEVL------S----K---F------VGETEKNIRDLFA 308 (744)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~la~~--l~~~~--~~~v~~~~l~------~----~---~------~g~~~~~i~~~f~ 308 (744)
+..+-|.|+|++|+|||++|+.+++. ....+ +..++...-. . . . ..+.+.....+.+
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 44567899999999999999999987 43222 1222222111 0 0 0 0112222223332
Q ss_pred HHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCC
Q 004584 309 DAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPG 388 (744)
Q Consensus 309 ~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~g 388 (744)
.. .. .+++|+||+++... .+..+...+.. ...+..||.||.... +-.....
T Consensus 97 ~L-~~--------~~~LlVlDdv~~~~---------------~~~~l~~~~~~--~~~~~kilvTTR~~~-v~~~~~~-- 147 (287)
T PF00931_consen 97 LL-KD--------KRCLLVLDDVWDEE---------------DLEELREPLPS--FSSGSKILVTTRDRS-VAGSLGG-- 147 (287)
T ss_dssp HH-CC--------TSEEEEEEEE-SHH---------------HH-------HC--HHSS-EEEEEESCGG-GGTTHHS--
T ss_pred hh-cc--------ccceeeeeeecccc---------------ccccccccccc--ccccccccccccccc-ccccccc--
Confidence 22 22 26799999988542 22222222211 112456677776543 2222211
Q ss_pred ccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCcccHHHHHHhcCCCC
Q 004584 389 RLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYS 438 (744)
Q Consensus 389 Rf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~s 438 (744)
-...++++..+.++-.++|+..............+....++++.+.|..
T Consensus 148 -~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 196 (287)
T PF00931_consen 148 -TDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLP 196 (287)
T ss_dssp -CEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-H
T ss_pred -ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1457899999999999999988655431001112334678899988743
No 477
>PRK06851 hypothetical protein; Provisional
Probab=97.94 E-value=0.00014 Score=78.20 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=27.5
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhc---CCCEEEEcccc
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAE 569 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~ 569 (744)
..-++|.|+||+|||++++.++.+. |......-|+.
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~ 252 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGF 252 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 3558999999999999999998765 55555555553
No 478
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.93 E-value=1.6e-05 Score=89.51 Aligned_cols=178 Identities=24% Similarity=0.235 Sum_probs=97.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEecccchhcccccchHHHHHHHHHHHHhc-------ccccCCCCCe
Q 004584 253 HVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGETEKNIRDLFADAEND-------QRTRGDQSDL 323 (744)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~-------~~~~~~~~~p 323 (744)
....++++|.+||||+++|+++..... ..+++.++|..+..... -..+|...... ....-.....
T Consensus 161 ~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 234 (441)
T PRK10365 161 SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLL------ESELFGHEKGAFTGADKRREGRFVEADG 234 (441)
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHH------HHHhcCCCCCCcCCCCcCCCCceeECCC
Confidence 346799999999999999999987653 35788889876532111 11222211100 0000011123
Q ss_pred eEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCcc---------CCCcEEEEEEeCCCCccchhhcCCCccce--
Q 004584 324 HVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE---------SLNNVLLIGMTNRKDMLDEALLRPGRLEV-- 392 (744)
Q Consensus 324 ~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~---------~~~~v~vI~~tn~~~~id~al~r~gRf~~-- 392 (744)
.+||||||+.|.+. ....|+..++.-. ...++.+|++|+..- .....+|+|..
T Consensus 235 gtl~ldei~~l~~~-------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~---~~~~~~~~~~~~l 298 (441)
T PRK10365 235 GTLFLDEIGDISPM-------------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL---AAEVNAGRFRQDL 298 (441)
T ss_pred CEEEEeccccCCHH-------------HHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCH---HHHHHcCCchHHH
Confidence 58999999998532 2233444443211 012577898887742 22223445532
Q ss_pred -----EEEEcCCCHHHHHH----HHHHHHhcccc----cCCCCCcccHHHHHHhcCCCChHHHHHHHHHHHHH
Q 004584 393 -----QVEISLPDENGRLQ----ILQIHTNKMKE----NSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSF 452 (744)
Q Consensus 393 -----~i~i~~Pd~~~r~~----Il~~~~~~~~~----~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~ 452 (744)
.+.+.+|...+|.+ +++.++..... ...-..+..+..|....-.-+.++|.++++.|+..
T Consensus 299 ~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred HHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 35666676665543 44444443321 11112333455555555344678999999987754
No 479
>PF02933 CDC48_2: Cell division protein 48 (CDC48), domain 2; InterPro: IPR004201 This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C terminus. The VAT-N domain found in AAA ATPases (IPR003959 from INTERPRO) is a substrate 185-residue recognition domain [].; GO: 0005524 ATP binding; PDB: 1QDN_B 1QCS_A 1CR5_C 3QQ8_A 3HU2_A 3HU1_E 3HU3_A 3QWZ_A 3TIW_B 3QQ7_A ....
Probab=97.92 E-value=3.1e-05 Score=61.60 Aligned_cols=58 Identities=22% Similarity=0.376 Sum_probs=50.7
Q ss_pred cCHHHHHHHHHHHhcCCccccCcEEEEEEcCeEEEEEEEEeeecCcccccccccceecCCcEEEEEe
Q 004584 123 VDAVLLANQLRKRFINQVMTAGQRVVFEYHGNNYIFTVNGAAVEGQEKSNALERGIITNETYFVFEA 189 (744)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 189 (744)
+|.+.+. +|+++|.+++++.||.+.+.+.|..+.|+|++++| .+.+.++++|.+.+..
T Consensus 2 ~d~d~~~-~~~~~l~~~pv~~Gd~i~~~~~~~~~~~~V~~~~P--------~~~v~it~~T~i~i~~ 59 (64)
T PF02933_consen 2 FDGDFMA-YFKRQLEGRPVTKGDTIVFPFFGQALPFKVVSTEP--------SGPVIITEDTEIEIKE 59 (64)
T ss_dssp ECSHHHH-HHHHHHTTEEEETT-EEEEEETTEEEEEEEEEECS--------SSEEEEETTSEEEESS
T ss_pred CCccHHH-HHHHHHcCCCccCCCEEEEEeCCcEEEEEEEEEEc--------CCCEEECCCcEEEEcc
Confidence 4666677 99999999999999999999999999999999998 4478999999998864
No 480
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=0.00028 Score=73.60 Aligned_cols=155 Identities=11% Similarity=0.114 Sum_probs=92.4
Q ss_pred CCceeeeeecCCCCChhHHHHHHHhhcCC-------CE--------E-EEcccccccccchh--hHhhHHHHHHHHHh--
Q 004584 532 SPLVTCLLEGPSGSGKTALAATAGIDSDF-------PF--------V-KIISAESMIGLHES--TKCAQIVKVFEDAY-- 591 (744)
Q Consensus 532 ~~~~~~Ll~GppG~GKT~la~~~a~~~~~-------~~--------i-~v~~~~~~~g~~~~--~~~~~i~~if~~a~-- 591 (744)
..+...||+|| .||+++|+.+|...-+ ++ + .-+.|+...=..++ -+.+.|+++.+.+.
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 44567899996 6899999998864311 00 0 00112221101111 13456777766654
Q ss_pred --cCCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCCCC
Q 004584 592 --KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLK 669 (744)
Q Consensus 592 --~~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~~ 669 (744)
.+...|++||++|++. ....++||..|+..++ +.++|-.|+.++.+-+ -+++| +..++|++ +
T Consensus 100 p~~~~~kV~II~~ad~m~----------~~AaNaLLKtLEEPp~---~t~~iL~t~~~~~lLp-TI~SR-cq~i~f~~-~ 163 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMH----------VNAANSLLKVIEEPQS---EIYIFLLTNDENKVLP-TIKSR-TQIFHFPK-N 163 (290)
T ss_pred cccCCcEEEEeehhhhcC----------HHHHHHHHHHhcCCCC---CeEEEEEECChhhCch-HHHHc-ceeeeCCC-c
Confidence 3456899999999984 5677888888887543 3455556655655555 34555 45889987 7
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHhCCCCcHHHHHHHH
Q 004584 670 TDDAKKVLKQLNVFAEEDVDSASEALNDMPIKKLYMLI 707 (744)
Q Consensus 670 ~~~~~~Il~~~~~~~~~~~~~~~~~~~~g~ir~l~~~l 707 (744)
.+++.+++...+ ... +...+++.+++ ++.+++.++
T Consensus 164 ~~~~~~~L~~~g-~~~-~~a~~la~~~~-s~~~A~~l~ 198 (290)
T PRK07276 164 EAYLIQLLEQKG-LLK-TQAELLAKLAQ-STSEAEKLA 198 (290)
T ss_pred HHHHHHHHHHcC-CCh-HHHHHHHHHCC-CHHHHHHHh
Confidence 888888888654 232 22344444443 455555544
No 481
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.92 E-value=2.6e-05 Score=69.24 Aligned_cols=23 Identities=43% Similarity=0.931 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhc
Q 004584 257 MLLYGPPGTGKTLMARQIGKMLN 279 (744)
Q Consensus 257 iLL~GppGtGKT~lar~la~~l~ 279 (744)
|.|+||||+|||++|+.+++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998884
No 482
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.89 E-value=0.00012 Score=75.72 Aligned_cols=204 Identities=18% Similarity=0.234 Sum_probs=114.8
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHh--cCCCcEEeccc
Q 004584 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGP 289 (744)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l--~~~~~~~v~~~ 289 (744)
+.-.|+. |.+.....+.++.++-...+.. -++|+.|.+||||-++|+++.... +..++..+||.
T Consensus 199 ~~~~F~~--~v~~S~~mk~~v~qA~k~AmlD------------APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA 264 (511)
T COG3283 199 DVSGFEQ--IVAVSPKMKHVVEQAQKLAMLD------------APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCA 264 (511)
T ss_pred cccchHH--HhhccHHHHHHHHHHHHhhccC------------CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecC
Confidence 4556777 8888888887777765544332 258999999999999999987665 24577888887
Q ss_pred chhcc-----cccchH--HHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhcc-C
Q 004584 290 EVLSK-----FVGETE--KNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKID-G 361 (744)
Q Consensus 290 ~l~~~-----~~g~~~--~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d-~ 361 (744)
.+-.. .+|..+ +--..+|+.|... -+|+|||-.+. .++...||..+. |
T Consensus 265 ~lPe~~aEsElFG~apg~~gk~GffE~AngG-----------TVlLDeIgEmS-------------p~lQaKLLRFL~DG 320 (511)
T COG3283 265 SLPEDAAESELFGHAPGDEGKKGFFEQANGG-----------TVLLDEIGEMS-------------PRLQAKLLRFLNDG 320 (511)
T ss_pred CCchhHhHHHHhcCCCCCCCccchhhhccCC-----------eEEeehhhhcC-------------HHHHHHHHHHhcCC
Confidence 65432 111111 2223466666543 89999998764 345555666653 2
Q ss_pred c-c-------CCCcEEEEEEeCCCC--ccchhhcCC---CccceEEEEcCCCHHHHHH----H----HHHHHhcccccCC
Q 004584 362 V-E-------SLNNVLLIGMTNRKD--MLDEALLRP---GRLEVQVEISLPDENGRLQ----I----LQIHTNKMKENSF 420 (744)
Q Consensus 362 ~-~-------~~~~v~vI~~tn~~~--~id~al~r~---gRf~~~i~i~~Pd~~~r~~----I----l~~~~~~~~~~~~ 420 (744)
. . -.-+|.||++|..+= .....-.|. .|+. .+.+..|...+|.+ + ++.++.++....+
T Consensus 321 tFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLN-VLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~p 399 (511)
T COG3283 321 TFRRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLN-VLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRP 399 (511)
T ss_pred ceeecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHhh-eeeecCCccccCcccchHHHHHHHHHHHHHhCCCCC
Confidence 1 1 112699999997651 111111111 1333 35566666555532 2 2233333321111
Q ss_pred CCCcccHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 004584 421 LAPDVNLQELAARTKNYSGAELEGVAKSAVSFAL 454 (744)
Q Consensus 421 ~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~ 454 (744)
-....-+..|.+.----+-+++.+.+-+|+...-
T Consensus 400 kl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~E 433 (511)
T COG3283 400 KLAADLLTVLTRYAWPGNVRQLKNAIYRALTLLE 433 (511)
T ss_pred ccCHHHHHHHHHcCCCccHHHHHHHHHHHHHHhc
Confidence 1111123334333322356888888888876554
No 483
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=0.00017 Score=75.92 Aligned_cols=135 Identities=16% Similarity=0.175 Sum_probs=87.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhcCCCcEEec---ccchhcccc--cc--hHHHHHHHHHHHHhcccccCCCCCeeEEE
Q 004584 255 KGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVN---GPEVLSKFV--GE--TEKNIRDLFADAENDQRTRGDQSDLHVII 327 (744)
Q Consensus 255 ~giLL~GppGtGKT~lar~la~~l~~~~~~~v~---~~~l~~~~~--g~--~~~~i~~~f~~a~~~~~~~~~~~~p~Il~ 327 (744)
+.+||+|+.|.||+.+++.+++.+.|.....++ .++.+..+- |. ....++++.+......- ..+...|++
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~~---~~~~~KvvI 95 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFSSF---VQSQKKILI 95 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccCCc---ccCCceEEE
Confidence 468999999999999999999998432100000 010000011 11 22345555554432210 112345999
Q ss_pred EcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHH
Q 004584 328 FDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQI 407 (744)
Q Consensus 328 iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~I 407 (744)
||++|.+. ....+.||..++. +..++++|..|+.++.+-|.+++ |+. .++|.+|+.++..+.
T Consensus 96 I~~~e~m~-------------~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc~-~~~f~~l~~~~l~~~ 157 (299)
T PRK07132 96 IKNIEKTS-------------NSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RCQ-VFNVKEPDQQKILAK 157 (299)
T ss_pred EecccccC-------------HHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--CeE-EEECCCCCHHHHHHH
Confidence 99998763 3466788888884 55677888888888999999988 644 689999998887777
Q ss_pred HHH
Q 004584 408 LQI 410 (744)
Q Consensus 408 l~~ 410 (744)
|..
T Consensus 158 l~~ 160 (299)
T PRK07132 158 LLS 160 (299)
T ss_pred HHH
Confidence 653
No 484
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.85 E-value=0.00023 Score=74.30 Aligned_cols=132 Identities=19% Similarity=0.201 Sum_probs=87.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE---------------ecccchhccc-cc--chHHHHHHHHHHHHhcc
Q 004584 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI---------------VNGPEVLSKF-VG--ETEKNIRDLFADAENDQ 314 (744)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~la~~l~~~~~~~---------------v~~~~l~~~~-~g--~~~~~i~~~f~~a~~~~ 314 (744)
.+..+||+|| +||+++|+.+|+.+.+..... -+-+++.--. .| -.-..+|++.+.+...
T Consensus 23 l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~- 99 (290)
T PRK07276 23 LNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS- 99 (290)
T ss_pred cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC-
Confidence 3457999996 689999999999885432110 0112221100 11 1235677766665543
Q ss_pred cccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEE
Q 004584 315 RTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQV 394 (744)
Q Consensus 315 ~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i 394 (744)
|..+ ...|++||++|.+. ....|.||+.++ ++..++++|..|+.++.+-|.+++ |+. .+
T Consensus 100 p~~~---~~kV~II~~ad~m~-------------~~AaNaLLKtLE--EPp~~t~~iL~t~~~~~lLpTI~S--Rcq-~i 158 (290)
T PRK07276 100 GYEG---KQQVFIIKDADKMH-------------VNAANSLLKVIE--EPQSEIYIFLLTNDENKVLPTIKS--RTQ-IF 158 (290)
T ss_pred cccC---CcEEEEeehhhhcC-------------HHHHHHHHHHhc--CCCCCeEEEEEECChhhCchHHHH--cce-ee
Confidence 3322 23599999999874 346688999988 455678999999999999999999 764 67
Q ss_pred EEcCCCHHHHHHHHH
Q 004584 395 EISLPDENGRLQILQ 409 (744)
Q Consensus 395 ~i~~Pd~~~r~~Il~ 409 (744)
.|+. +.+...+++.
T Consensus 159 ~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 159 HFPK-NEAYLIQLLE 172 (290)
T ss_pred eCCC-cHHHHHHHHH
Confidence 7765 5555555554
No 485
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.84 E-value=7.8e-05 Score=85.37 Aligned_cols=199 Identities=13% Similarity=0.107 Sum_probs=110.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhcC-CCcEEecccchhcccccchHHHHHHHHHHHHh-cccccCCCCCeeEEEEcCcc
Q 004584 255 KGMLLYGPPGTGKTLMARQIGKMLNG-MEPKIVNGPEVLSKFVGETEKNIRDLFADAEN-DQRTRGDQSDLHVIIFDEID 332 (744)
Q Consensus 255 ~giLL~GppGtGKT~lar~la~~l~~-~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~-~~~~~~~~~~p~Il~iDEid 332 (744)
.||+|.|++|||||+++++++..+.. .++..+...--....+|.. .+...+..-.. ..|-.-......|||+||+.
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~--Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n 103 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGL--DLAATLRAGRPVAQRGLLAEADGGVLVLAMAE 103 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCc--hHHhHhhcCCcCCCCCceeeccCCEEEecCcc
Confidence 58999999999999999999999854 2333322111111222221 11111111110 00100011112399999999
Q ss_pred hhcccCCCCCCCCccHHHHHHHHHHhccCc-----------cCCCcEEEEEEeCCC---CccchhhcCCCccceEEEEcC
Q 004584 333 AICKSRGSTRDGTGVHDSIVNQLLTKIDGV-----------ESLNNVLLIGMTNRK---DMLDEALLRPGRLEVQVEISL 398 (744)
Q Consensus 333 ~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~-----------~~~~~v~vI~~tn~~---~~id~al~r~gRf~~~i~i~~ 398 (744)
.+ ...+++.|+.-|+.- ....++++|++.|.. ..++++++. ||+..+.++.
T Consensus 104 ~~-------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~ 168 (584)
T PRK13406 104 RL-------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDG 168 (584)
T ss_pred cC-------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCC
Confidence 76 356788888887631 122468888874432 348899998 9999999998
Q ss_pred CCHHHHH-------HHHHHHHhcccccCCCCCcccHHHHHHhc--CCC-ChHHHHHHHHHHHHHHHHhccccCCCCCCCc
Q 004584 399 PDENGRL-------QILQIHTNKMKENSFLAPDVNLQELAART--KNY-SGAELEGVAKSAVSFALNRQLSMDDLTKPVD 468 (744)
Q Consensus 399 Pd~~~r~-------~Il~~~~~~~~~~~~~~~~~~l~~la~~t--~g~-sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~ 468 (744)
|+..+.. +|.+..- .++ +. ..++..+..++..+ .|. +.+--..+++-|...|.-+
T Consensus 169 ~~~~~~~~~~~~~~~I~~AR~-rl~-~v-~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~------------ 233 (584)
T PRK13406 169 LALRDAREIPIDADDIAAARA-RLP-AV-GPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALA------------ 233 (584)
T ss_pred CChHHhcccCCCHHHHHHHHH-HHc-cC-CCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHc------------
Confidence 8765432 3333221 111 11 12333344444332 243 5555566777666666543
Q ss_pred cccceeehhHHHHHHhhh
Q 004584 469 EESIKVTMDDFLHALYEI 486 (744)
Q Consensus 469 ~~~~~it~~df~~al~~~ 486 (744)
....|+.+|+..|+.-+
T Consensus 234 -Gr~~V~~~dv~~Aa~lv 250 (584)
T PRK13406 234 -GRTAVEEEDLALAARLV 250 (584)
T ss_pred -CCCCCCHHHHHHHHHHH
Confidence 23457788887777643
No 486
>PF05729 NACHT: NACHT domain
Probab=97.83 E-value=7.7e-05 Score=71.39 Aligned_cols=140 Identities=20% Similarity=0.267 Sum_probs=70.6
Q ss_pred eeeeecCCCCChhHHHHHHHhhcC--------CCEEEEcccccccc------------cchhhHhhHHHHHH-HHHhcCC
Q 004584 536 TCLLEGPSGSGKTALAATAGIDSD--------FPFVKIISAESMIG------------LHESTKCAQIVKVF-EDAYKSP 594 (744)
Q Consensus 536 ~~Ll~GppG~GKT~la~~~a~~~~--------~~~i~v~~~~~~~g------------~~~~~~~~~i~~if-~~a~~~~ 594 (744)
-++++|+||+|||++++.++.... ..++.......... .........+...+ ..+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 378999999999999999885431 11221111111100 00000011112211 1233556
Q ss_pred CeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCCCCHHHHH
Q 004584 595 LSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAK 674 (744)
Q Consensus 595 ~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~ 674 (744)
..+++||-+|.+...... ...+.....|..++......+.+++|.+.+.....+.. .+ ... ..+.+++++.+++.
T Consensus 82 ~~llilDglDE~~~~~~~--~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~-~~-~~~-~~~~l~~~~~~~~~ 156 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS--QERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRR-RL-KQA-QILELEPFSEEDIK 156 (166)
T ss_pred ceEEEEechHhcccchhh--hHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHH-hc-CCC-cEEEECCCCHHHHH
Confidence 789999999999753221 01223444454555542222334444433222211111 11 111 57899999999999
Q ss_pred HHHHHc
Q 004584 675 KVLKQL 680 (744)
Q Consensus 675 ~Il~~~ 680 (744)
+++++.
T Consensus 157 ~~~~~~ 162 (166)
T PF05729_consen 157 QYLRKY 162 (166)
T ss_pred HHHHHH
Confidence 998863
No 487
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.82 E-value=0.00017 Score=68.75 Aligned_cols=73 Identities=26% Similarity=0.289 Sum_probs=43.3
Q ss_pred eeeecCCCCChhHHHHHHHhhc---CCCEEEEccccccc---------------------cc-c-hhhHhhHHHHHHHHH
Q 004584 537 CLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMI---------------------GL-H-ESTKCAQIVKVFEDA 590 (744)
Q Consensus 537 ~Ll~GppG~GKT~la~~~a~~~---~~~~i~v~~~~~~~---------------------g~-~-~~~~~~~i~~if~~a 590 (744)
++++||||+|||+++..++... +.+.+.+....... .. . ..............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999987654 34444442221110 00 0 000011111233445
Q ss_pred hcCCCeEEEEeccchhhcc
Q 004584 591 YKSPLSIIILDDIERLLEY 609 (744)
Q Consensus 591 ~~~~~~il~iDEid~l~~~ 609 (744)
....+.+++|||+..+.+.
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 5677899999999998743
No 488
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.82 E-value=4.8e-05 Score=89.89 Aligned_cols=162 Identities=16% Similarity=0.181 Sum_probs=100.6
Q ss_pred eeeeecCCCCChhHHHHHHHhhcCCCEEEEccccccccc------chhhHhhHHHHHHHH-----HhcCCCeEEEEeccc
Q 004584 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGL------HESTKCAQIVKVFED-----AYKSPLSIIILDDIE 604 (744)
Q Consensus 536 ~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~------~~~~~~~~i~~if~~-----a~~~~~~il~iDEid 604 (744)
.++++||||.|||+.+.++|.+.++..+..+....--+. .+....+.+...|.. .....-.||++||+|
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD 438 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVD 438 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccc
Confidence 369999999999999999999999999998766442111 111122234444410 112233499999999
Q ss_pred hhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCccccccccceEEEcCCCCHHHHHHHHHH----c
Q 004584 605 RLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQ----L 680 (744)
Q Consensus 605 ~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~----~ 680 (744)
-+.+ . .+..++.+-.+.+.. ..-+|+++|..+...... ..+-+..++|+.|+.+.+..-+.. .
T Consensus 439 ~~~~-~------dRg~v~~l~~l~~ks-----~~Piv~~cndr~~p~sr~-~~~~~~~l~f~kP~~~~i~~ri~si~~se 505 (871)
T KOG1968|consen 439 GMFG-E------DRGGVSKLSSLCKKS-----SRPLVCTCNDRNLPKSRA-LSRACSDLRFSKPSSELIRSRIMSICKSE 505 (871)
T ss_pred cccc-h------hhhhHHHHHHHHHhc-----cCCeEEEecCCCCccccc-hhhhcceeeecCCcHHHHHhhhhhhhccc
Confidence 9874 1 123444455555432 234566777765544422 234446789999996665544443 3
Q ss_pred cCCCHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 004584 681 NVFAEEDVDSASEALNDMPIKKLYMLIEMA 710 (744)
Q Consensus 681 ~~~~~~~~~~~~~~~~~g~ir~l~~~l~~a 710 (744)
....+.+..+-+...+++|+|+.++.+.+-
T Consensus 506 ~~ki~~~~l~~~s~~~~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 506 GIKISDDVLEEISKLSGGDIRQIIMQLQFW 535 (871)
T ss_pred ceecCcHHHHHHHHhcccCHHHHHHHHhhh
Confidence 333444444445556799999999998876
No 489
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.80 E-value=0.00066 Score=71.32 Aligned_cols=178 Identities=17% Similarity=0.165 Sum_probs=102.5
Q ss_pred HHHhcCCCCceeeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccc------------cc--cc-----hh--hHhhHH
Q 004584 525 QVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM------------IG--LH-----ES--TKCAQI 583 (744)
Q Consensus 525 ~~~~~~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~------------~g--~~-----~~--~~~~~i 583 (744)
.+-.....-|.++.|||-+|||||.+.+.+-+.++.+.+.+++.+.+ ++ .+ ++ +.....
T Consensus 21 Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~ 100 (438)
T KOG2543|consen 21 LLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDF 100 (438)
T ss_pred HhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHH
Confidence 33344446677889999999999999999999999998888766542 11 00 11 112222
Q ss_pred HHHHHH--H-hc-CCCeEEEEeccchhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCcccccccc
Q 004584 584 VKVFED--A-YK-SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAF 659 (744)
Q Consensus 584 ~~if~~--a-~~-~~~~il~iDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~~l~~rf 659 (744)
-.+|.+ + .+ ...-.|++|.+|.+-+. ...+++.|+.+-+-++.. .-++++..+..+..... -.|.+
T Consensus 101 i~~l~q~~~~t~~d~~~~liLDnad~lrD~-------~a~ll~~l~~L~el~~~~-~i~iils~~~~e~~y~~--n~g~~ 170 (438)
T KOG2543|consen 101 IYLLVQWPAATNRDQKVFLILDNADALRDM-------DAILLQCLFRLYELLNEP-TIVIILSAPSCEKQYLI--NTGTL 170 (438)
T ss_pred HHHHHhhHHhhccCceEEEEEcCHHhhhcc-------chHHHHHHHHHHHHhCCC-ceEEEEeccccHHHhhc--ccCCC
Confidence 334443 2 12 23457899999999643 355667676554444322 22222223333221111 01333
Q ss_pred c-eEEEcCCCCHHHHHHHHHHccC--CCHHHHHHHHHhC------CCCcHHHHHHHHHHHHh
Q 004584 660 S-VTYHVPTLKTDDAKKVLKQLNV--FAEEDVDSASEAL------NDMPIKKLYMLIEMAAQ 712 (744)
Q Consensus 660 ~-~~i~~p~~~~~~~~~Il~~~~~--~~~~~~~~~~~~~------~~g~ir~l~~~l~~a~~ 712 (744)
+ ..++||.|+.++++.|+.+... ...+-..+.+.-+ .-++++++..++..+-.
T Consensus 171 ~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~crd~~eL~~~~~~~wp 232 (438)
T KOG2543|consen 171 EIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACRDVNELRSLISLAWP 232 (438)
T ss_pred CceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3 5789999999999999998532 2211112222211 13488888877776644
No 490
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.76 E-value=0.00041 Score=64.36 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=25.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhcC
Q 004584 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNG 280 (744)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~la~~l~~ 280 (744)
+....+.+.|+||+||||++..++..+..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 44567999999999999999999998853
No 491
>PHA00729 NTP-binding motif containing protein
Probab=97.73 E-value=9.2e-05 Score=73.90 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=22.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhc
Q 004584 255 KGMLLYGPPGTGKTLMARQIGKMLN 279 (744)
Q Consensus 255 ~giLL~GppGtGKT~lar~la~~l~ 279 (744)
.+++|+|+||||||++|.++++.+.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999873
No 492
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.73 E-value=5.8e-05 Score=81.10 Aligned_cols=156 Identities=20% Similarity=0.250 Sum_probs=76.5
Q ss_pred cCchHHHHHHHHHHHHhccCCChhHH---hHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccc-----hh
Q 004584 221 IGGLSAEFADIFRRAFASRVFPPHVT---SKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE-----VL 292 (744)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~---~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~-----l~ 292 (744)
|.|.+..+..| .+-+....-. .....+..-++||.|.||||||.+.+.+++... . -.++++.. +.
T Consensus 26 i~g~~~iK~ai-----ll~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~p-r-~v~~~g~~~s~~gLt 98 (331)
T PF00493_consen 26 IYGHEDIKKAI-----LLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAP-R-SVYTSGKGSSAAGLT 98 (331)
T ss_dssp TTT-HHHHHHH-----CCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-S-S-EEEEECCGSTCCCCC
T ss_pred CcCcHHHHHHH-----HHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCC-c-eEEECCCCcccCCcc
Confidence 78877765544 3333321110 001123456899999999999999998876542 1 12222222 11
Q ss_pred ---------cccccchHHHHHHHHHHHHhcccccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHHHHHHHHhccC--
Q 004584 293 ---------SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDG-- 361 (744)
Q Consensus 293 ---------~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~-- 361 (744)
+.|.-+.. .+-.|.. .|++|||+|.+-. .....|++.|+.
T Consensus 99 a~~~~d~~~~~~~leaG-----alvlad~-----------GiccIDe~dk~~~-------------~~~~~l~eaMEqq~ 149 (331)
T PF00493_consen 99 ASVSRDPVTGEWVLEAG-----ALVLADG-----------GICCIDEFDKMKE-------------DDRDALHEAMEQQT 149 (331)
T ss_dssp EEECCCGGTSSECEEE------HHHHCTT-----------SEEEECTTTT--C-------------HHHHHHHHHHHCSC
T ss_pred ceeccccccceeEEeCC-----chhcccC-----------ceeeecccccccc-------------hHHHHHHHHHHcCe
Confidence 11111111 1222222 2999999998731 234556666653
Q ss_pred --ccC-------CCcEEEEEEeCCCC-------------ccchhhcCCCccceEEEE-cCCCHHHHHHHHHHHHhc
Q 004584 362 --VES-------LNNVLLIGMTNRKD-------------MLDEALLRPGRLEVQVEI-SLPDENGRLQILQIHTNK 414 (744)
Q Consensus 362 --~~~-------~~~v~vI~~tn~~~-------------~id~al~r~gRf~~~i~i-~~Pd~~~r~~Il~~~~~~ 414 (744)
+.. ..+..|+|++|+.. .+++.|++ |||..+.+ ..|+.+.-..|.+..++.
T Consensus 150 isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 150 ISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp EEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred eccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEec
Confidence 111 23578999999865 36888988 99977654 566755555555544443
No 493
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.72 E-value=6.8e-05 Score=71.45 Aligned_cols=23 Identities=39% Similarity=0.782 Sum_probs=21.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHhc
Q 004584 257 MLLYGPPGTGKTLMARQIGKMLN 279 (744)
Q Consensus 257 iLL~GppGtGKT~lar~la~~l~ 279 (744)
++++||||+|||++++.++....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998873
No 494
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.70 E-value=0.00012 Score=73.50 Aligned_cols=41 Identities=24% Similarity=0.447 Sum_probs=31.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh--cCCCcEEecccc
Q 004584 250 GIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPE 290 (744)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~la~~l--~~~~~~~v~~~~ 290 (744)
|++...-++++||||+|||+++..++... .+....+++..+
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 66777789999999999999999988665 234456666654
No 495
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.69 E-value=0.0006 Score=75.13 Aligned_cols=122 Identities=17% Similarity=0.160 Sum_probs=76.2
Q ss_pred eeeeecCCCCChhHHHHHHHhhcCCCEEEEcccccccccchhhHhhHHHHHHHHHhcCCCeEEEEeccchhhccCCCCcc
Q 004584 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPR 615 (744)
Q Consensus 536 ~~Ll~GppG~GKT~la~~~a~~~~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a~~~~~~il~iDEid~l~~~~~~g~~ 615 (744)
-++++||.+||||++++.+.....-.++.++..+......+ ..+..+.+..++......+|||||+.+-
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~---l~d~~~~~~~~~~~~~~yifLDEIq~v~-------- 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIE---LLDLLRAYIELKEREKSYIFLDEIQNVP-------- 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhh---HHHHHHHHHHhhccCCceEEEecccCch--------
Confidence 78999999999999998888776555666654443222111 1233334444444355799999999974
Q ss_pred hhHHHHHHHHHHhccCCCCCCcEEEEEeCCCCCCCCcc-ccccccceEEEcCCCCHHHHHH
Q 004584 616 FSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSV-GICDAFSVTYHVPTLKTDDAKK 675 (744)
Q Consensus 616 ~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~~~l~~~-~l~~rf~~~i~~p~~~~~~~~~ 675 (744)
.+...+..+.+.... ++++.|.++..-..... .+.|| ...+++.|++-.|...
T Consensus 108 ---~W~~~lk~l~d~~~~---~v~itgsss~ll~~~~~~~L~GR-~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 108 ---DWERALKYLYDRGNL---DVLITGSSSSLLSKEISESLAGR-GKDLELYPLSFREFLK 161 (398)
T ss_pred ---hHHHHHHHHHccccc---eEEEECCchhhhccchhhhcCCC-ceeEEECCCCHHHHHh
Confidence 345556666655322 45555444443332322 56688 5688999999777754
No 496
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.68 E-value=0.00022 Score=66.07 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.5
Q ss_pred CceeeeeecCCCCChhHHHHHHHhhc
Q 004584 533 PLVTCLLEGPSGSGKTALAATAGIDS 558 (744)
Q Consensus 533 ~~~~~Ll~GppG~GKT~la~~~a~~~ 558 (744)
.+..+.++|+||+|||+++..++..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 45679999999999999999999653
No 497
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=97.67 E-value=0.0017 Score=82.46 Aligned_cols=148 Identities=22% Similarity=0.289 Sum_probs=88.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhcCCCcEEecccchhcccccchHHHHHHHHH-HHHhccc--ccCCCCCeeEEEEcCc
Q 004584 255 KGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFA-DAENDQR--TRGDQSDLHVIIFDEI 331 (744)
Q Consensus 255 ~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~-~a~~~~~--~~~~~~~p~Il~iDEi 331 (744)
+.++++||+|+|||.++..............++.+. ...++ ....++. .+....+ .......-.++|+||+
T Consensus 128 k~~~~~g~~g~gk~~~~~~~~~~~~~~~~~~~~fs~-----~ts~~-~~q~~~~~~~~k~~~~~~~~~~~~~~~~f~ddi 201 (1395)
T KOG3595|consen 128 KPVLLVGPTGTGKTVLVLSELRSLQDREVYLLNFSS-----VTSSE-LLQEIIESKLDKRRSGNYGPPLGKKLVLFVDDI 201 (1395)
T ss_pred CeEEEEcCCCCCeeeehHHHHHhcccchheEEeeee-----eccHH-HHHHHHHHHHHHhcccCCCCCCCceeEEEEecc
Confidence 679999999999999988777665433322222221 11222 1222221 1111111 1111222349999999
Q ss_pred chhcccCCCCCCCCccHHHHHHHHHHhccCcc-------CCCcEEEEEEeCCCC----ccchhhcCCCccceEEEEcCCC
Q 004584 332 DAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE-------SLNNVLLIGMTNRKD----MLDEALLRPGRLEVQVEISLPD 400 (744)
Q Consensus 332 d~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~-------~~~~v~vI~~tn~~~----~id~al~r~gRf~~~i~i~~Pd 400 (744)
+.-....... .....++.+++..-.-.+ ..-++.++++.+.|. .+.+.+.| .|. .+.+..|+
T Consensus 202 nmp~~~~yg~----q~~~~~lrq~~e~~g~~~~~~~~~~~i~~i~~~~a~~~~~~gr~~i~~r~~r--~f~-~~~~~~~~ 274 (1395)
T KOG3595|consen 202 NMPALDKYGD----QPPIELLRQMLEHGGFYDRKKSEWVEIENVQLVGAMNPPGGGRNDITERFLR--HFL-IVSLNYPS 274 (1395)
T ss_pred CCchhhhcCC----ccHHHHHHHHHHhceeecccccceeEEeeeEEEeecCCCCCccCcccHHHHH--Hee-eEeeCCCC
Confidence 9866554332 334566666665532221 123689999999753 35777776 554 67899999
Q ss_pred HHHHHHHHHHHHhcc
Q 004584 401 ENGRLQILQIHTNKM 415 (744)
Q Consensus 401 ~~~r~~Il~~~~~~~ 415 (744)
.+...+|+..+...+
T Consensus 275 ~~sl~~if~~~~~~~ 289 (1395)
T KOG3595|consen 275 QESLTQIFNTILTGH 289 (1395)
T ss_pred hhhHHHHHHHHHhcc
Confidence 999999999887665
No 498
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.67 E-value=0.00015 Score=75.54 Aligned_cols=135 Identities=18% Similarity=0.208 Sum_probs=67.1
Q ss_pred ceeeeeecCCCCChhHHHHHHHhhc-CCCEEEEcccccccccchhhHhhHHHHHHHHH-----------hcCCCeEEEEe
Q 004584 534 LVTCLLEGPSGSGKTALAATAGIDS-DFPFVKIISAESMIGLHESTKCAQIVKVFEDA-----------YKSPLSIIILD 601 (744)
Q Consensus 534 ~~~~Ll~GppG~GKT~la~~~a~~~-~~~~i~v~~~~~~~g~~~~~~~~~i~~if~~a-----------~~~~~~il~iD 601 (744)
..++||+||+|||||++++.+-... +..++... +..+...+...+.++.+.. ..+...|+|||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~-----~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVIT-----INFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEE-----EES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeE-----eeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 4689999999999999998765443 33332211 1111222223333333221 12345799999
Q ss_pred ccchhhccCCCCcchhHHHHHHHHHHhccC---CCC------CCcEEEEEeCCCCCCCCcccccccc---ceEEEcCCCC
Q 004584 602 DIERLLEYVPIGPRFSNIISQTMLVLLKRL---PPK------GKKLLVIGTTSEVSFLDSVGICDAF---SVTYHVPTLK 669 (744)
Q Consensus 602 Eid~l~~~~~~g~~~~~~~~~~Ll~~l~~~---~~~------~~~v~vi~~tn~~~~l~~~~l~~rf---~~~i~~p~~~ 669 (744)
|++.-.... -|. ....+.|..+++.- +.. -.++.++|+.+... ....+..|| -.++.++.|+
T Consensus 108 DlN~p~~d~-ygt---q~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~--Gr~~is~R~~r~f~i~~~~~p~ 181 (272)
T PF12775_consen 108 DLNMPQPDK-YGT---QPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTG--GRNPISPRFLRHFNILNIPYPS 181 (272)
T ss_dssp TTT-S---T-TS-----HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTT--T--SHHHHHHTTEEEEE----T
T ss_pred ccCCCCCCC-CCC---cCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCC--CCCCCChHHhhheEEEEecCCC
Confidence 998643211 121 22233333333331 111 12577888887532 222233333 3578999999
Q ss_pred HHHHHHHHHH
Q 004584 670 TDDAKKVLKQ 679 (744)
Q Consensus 670 ~~~~~~Il~~ 679 (744)
.+.+..|+..
T Consensus 182 ~~sl~~If~~ 191 (272)
T PF12775_consen 182 DESLNTIFSS 191 (272)
T ss_dssp CCHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 9988888886
No 499
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.66 E-value=0.00015 Score=78.45 Aligned_cols=111 Identities=16% Similarity=0.175 Sum_probs=59.3
Q ss_pred CCCCceeeeeecCCCCChhHHHHHHHhhcCCC-EEEEccccccccc-c----hhhHhhHHHHHHHHHhcCCCeEEEEecc
Q 004584 530 KGSPLVTCLLEGPSGSGKTALAATAGIDSDFP-FVKIISAESMIGL-H----ESTKCAQIVKVFEDAYKSPLSIIILDDI 603 (744)
Q Consensus 530 ~~~~~~~~Ll~GppG~GKT~la~~~a~~~~~~-~i~v~~~~~~~g~-~----~~~~~~~i~~if~~a~~~~~~il~iDEi 603 (744)
...++++++|||++|+|||++.-.+...+... -.++--.+.+... . .......+..+-+... ....+|+|||+
T Consensus 58 ~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~-~~~~lLcfDEF 136 (362)
T PF03969_consen 58 PPPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELA-KESRLLCFDEF 136 (362)
T ss_pred cCCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHH-hcCCEEEEeee
Confidence 34578999999999999999999887665431 0000000111000 0 0000112333333332 23359999999
Q ss_pred chhhccCCCCcchhHHHHHHHHHHhccCCCCCCcEEEEEeCCCC-CCCCcc
Q 004584 604 ERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEV-SFLDSV 653 (744)
Q Consensus 604 d~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vi~~tn~~-~~l~~~ 653 (744)
+-- +++ ...++..|+..+=. ..+++|+|+|.+ +.|-+.
T Consensus 137 ~V~----Dia---DAmil~rLf~~l~~-----~gvvlVaTSN~~P~~Ly~~ 175 (362)
T PF03969_consen 137 QVT----DIA---DAMILKRLFEALFK-----RGVVLVATSNRPPEDLYKN 175 (362)
T ss_pred ecc----chh---HHHHHHHHHHHHHH-----CCCEEEecCCCChHHHcCC
Confidence 752 111 23444545444322 378999999984 444433
No 500
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.64 E-value=0.00078 Score=84.70 Aligned_cols=185 Identities=17% Similarity=0.260 Sum_probs=96.6
Q ss_pred CccccccCcCchHHHHHHHHHHHHhccCCChhHHhHhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCc--EEecccc
Q 004584 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEP--KIVNGPE 290 (744)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~--~~v~~~~ 290 (744)
...+++ +.|+++.++++ ..++. ++....+-+-++||+|+||||+|+++++.+...+- ..++...
T Consensus 180 ~~~~~~--~vG~~~~l~~l-~~lL~-----------l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~ 245 (1153)
T PLN03210 180 SNDFED--FVGIEDHIAKM-SSLLH-----------LESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAF 245 (1153)
T ss_pred Cccccc--ccchHHHHHHH-HHHHc-----------cccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccc
Confidence 334555 89999999888 44432 22345567889999999999999999988743211 1111100
Q ss_pred h---hcccc-------cchHHHHHHHHHHHHhccc---------ccCCCCCeeEEEEcCcchhcccCCCCCCCCccHHHH
Q 004584 291 V---LSKFV-------GETEKNIRDLFADAENDQR---------TRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSI 351 (744)
Q Consensus 291 l---~~~~~-------g~~~~~i~~~f~~a~~~~~---------~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~ 351 (744)
+ ...+. .......+++......... ...-...+.+|++|+++.. ..
T Consensus 246 v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~---------------~~ 310 (1153)
T PLN03210 246 ISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ---------------DV 310 (1153)
T ss_pred cccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH---------------HH
Confidence 0 00000 0000000111111000000 0000123569999998742 23
Q ss_pred HHHHHHhccCccCCCcEEEEEEeCCCCccchhhcCCCccceEEEEcCCCHHHHHHHHHHHHhcccccCCCCCccc----H
Q 004584 352 VNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVN----L 427 (744)
Q Consensus 352 ~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~----l 427 (744)
+..+....+.+. .+-.||.||.... +.+....+..++++.|+.++..+++..++-+.. . +..+ .
T Consensus 311 l~~L~~~~~~~~--~GsrIIiTTrd~~-----vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~----~-~~~~~~~l~ 378 (1153)
T PLN03210 311 LDALAGQTQWFG--SGSRIIVITKDKH-----FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN----S-PPDGFMELA 378 (1153)
T ss_pred HHHHHhhCccCC--CCcEEEEEeCcHH-----HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC----C-CcHHHHHHH
Confidence 344443333222 2345566666543 322224566889999999999999988765422 1 1112 3
Q ss_pred HHHHHhcCCCC
Q 004584 428 QELAARTKNYS 438 (744)
Q Consensus 428 ~~la~~t~g~s 438 (744)
.++++.+.|..
T Consensus 379 ~~iv~~c~GLP 389 (1153)
T PLN03210 379 SEVALRAGNLP 389 (1153)
T ss_pred HHHHHHhCCCc
Confidence 34666677655
Done!