Query 004584
Match_columns 744
No_of_seqs 467 out of 4680
Neff 8.5
Searched_HMMs 29240
Date Tue Mar 26 17:59:21 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004584.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1886-1890//hhsearch_pdb/004584hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 1.0 1 1 772.3 32.9 680 13-742 24-744 (806)
2 1ypw_A Transitional endoplasmi 1.0 1 1 576.6 22.0 614 13-680 24-660 (806)
3 4b4t_J 26S protease regulatory 1.0 1 1 400.4 30.6 287 174-489 102-392 (405)
4 4b4t_I 26S protease regulatory 1.0 1 1 392.4 29.9 323 134-490 97-427 (437)
5 4b4t_M 26S protease regulatory 1.0 1 1 389.1 29.8 288 175-491 136-427 (434)
6 4b4t_L 26S protease subunit RP 1.0 1 1 389.0 29.8 288 174-490 135-426 (437)
7 4b4t_H 26S protease regulatory 1.0 1 1 385.6 26.9 287 174-489 163-453 (467)
8 3hu3_A Transitional endoplasmi 1.0 1 1 380.4 40.1 446 13-510 24-481 (489)
9 3cf2_A TER ATPase, transitiona 1.0 1 1 379.1 10.7 266 210-491 470-748 (806)
10 4b4t_K 26S protease regulatory 1.0 1 1 378.9 31.4 288 174-490 126-419 (428)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=772.26 Aligned_cols=680 Identities=25% Similarity=0.356 Sum_probs=537.5
Q ss_pred EEEEEEECCCCCCCCCCEEEECHHHHCCCCC-CCCCCEEEEEECCC---EEEEEEECCCCCCCCEEECHHHHHCCCCCCC
Q ss_conf 2489930599444543279959631202489-99972389982990---9999960799999937536977722585699
Q 004584 13 TTMNVINTPSADLALTNLAYCSPADLLNFRV-PNSNLFLASVAGDS---FVLSLASHPSVNKGQIALNSVQRRHAKVSTG 88 (744)
Q Consensus 13 ~~l~v~~~p~~~~~~tn~v~v~~~~~~~~~~-~G~~~~~v~i~g~~---~v~~~~~~~~~~~~~i~~~~~~r~~~~~~~~ 88 (744)
.+|.|..+.+++ .+.|++||++|.+|++ +| ++|+|.|++ .++.+.++++++++.|+||+.+|+|+++.+|
T Consensus 24 ~~~~v~~~~~~d---~~~~~~~~~~~~~l~~~~g---d~v~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~v~~g 97 (806)
T 3cf2_A 24 NRLIVDEAINED---NSVVSLSQPKMDELQLFRG---DTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLG 97 (806)
T ss_dssp TEEECBCCSSCC---TTEEEECHHHHHHTTCCSS---CEEEEECGGGCBCCEEEEECTTSBTTBCEECHHHHHTTTCCTT
T ss_pred CEEEECCCCCCC---CCEEEECHHHHHHCCCCCC---CEEEEECCCCCEEEEEECCCCCCCCCEEEECHHHHHHCCCCCC
T ss_conf 448973677887---8989978999987699999---9899980797559999848888889979968999976699997
Q ss_pred CEEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHC--CCCCCCCCEEEEEECCEEEEEEEEEEEEC
Q ss_conf 9499999599986226869988634405886543478899999999821--88201694899998491799999876535
Q 004584 89 DHVSLNRFIPPEDFNLALLTVELEFVKKGSKNEQVDAVLLANQLRKRFI--NQVMTAGQRVVFEYHGNNYIFTVNGAAVE 166 (744)
Q Consensus 89 ~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~v~~~~~~ 166 (744)
|.|+|+++.... .+..+.+.. ... ....+....+..+++..|. ++++..|+.+.+...+..+.|+|+++.|
T Consensus 98 d~V~v~~~~~~~--~a~~v~l~p--~~~--~~~~~~~~~~~~~l~~~~~~~~~~v~~gd~~~v~~~~~~~~f~V~~~~P- 170 (806)
T 3cf2_A 98 DVISIQPCPDVK--YGKRIHVLP--IDD--TVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDP- 170 (806)
T ss_dssp CEEEEEECCCCC--BCSBEEEEE--BTT--TSTTCCSCHHHHTHHHHHTTTCCEEETTCEEEECCTTSCEEEEEEEESS-
T ss_pred CEEEEEECCCCC--CCCEEEEEC--CCC--CHHCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEEEEEEEC-
T ss_conf 989999899988--677899934--640--0210334579999999987568724679989994388579899999857-
Q ss_pred CCCCCCCCCCCEECCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 85544655440456874899972689852441146676655334677663226767609999999999986357993577
Q 004584 167 GQEKSNALERGIITNETYFVFEASNDSGIKIVNQREGANSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVT 246 (744)
Q Consensus 167 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~ 246 (744)
...+.+++.|.+.+....... .. .....|+++|++ |||+++++++| ++++.+|+.+|++|
T Consensus 171 -------~~~~~v~~~T~i~~~~~~~~~---~~-------~~~~~~~v~~~d--IgGl~~~~~~l-~e~v~~pl~~p~~f 230 (806)
T 3cf2_A 171 -------SPYCIVAPDTVIHCEGEPIKR---ED-------EEESLNEVGYDD--IGGCRKQLAQI-KEMVELPLRHPALF 230 (806)
T ss_dssp -------SSEEECCTTSBCCBCSCCBCC---CT-------TSCCSSSCCGGG--CCSCCTTHHHH-HHHHHHHHHCCGGG
T ss_pred -------CCCEEECCCCEEEEECCCCCC---CC-------CCCCCCCCCHHH--HCCHHHHHHHH-HHHHHHHCCCHHHH
T ss_conf -------987698898379992666676---65-------334589999035--14999999999-99999875198988
Q ss_pred HHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEE
Q ss_conf 47199888508999279991899999999995599738834210210120204999999999998200224999981699
Q 004584 247 SKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVI 326 (744)
Q Consensus 247 ~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~i~~~~~~~~~~g~~~~~i~~if~~a~~~~~~~~~~~~p~Ii 326 (744)
..+|+++|+|||||||||||||++|+++|++++ .+++.++++++.++|.|+++.+++.+|+.|+... ||||
T Consensus 231 ~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg-~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~--------PsII 301 (806)
T 3cf2_A 231 KAIGVKPPRGILLYGPPGTGKTLIARAVANETG-AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA--------PAII 301 (806)
T ss_dssp TSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT-CEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSC--------SEEE
T ss_pred HHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC-CEEEEEEHHHHHCCCCHHHHHHHHHHHHHHHHCC--------CEEE
T ss_conf 635899997589779899988999999999719-8399997379543331678999999999999729--------9299
Q ss_pred EECCCCHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHCCCCCCCEEEEECCCCHHHHHH
Q ss_conf 99174100003798888874078899999974029657894899998078876333313899631179973999778999
Q 004584 327 IFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQ 406 (744)
Q Consensus 327 ~iDEid~l~~~~~~~~~~~~~~~~i~~~Ll~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~ 406 (744)
||||+|++++++++..+ +...+++++|+..||++....+|+||++||+++.||++++|+|||+++|++++||.++|.+
T Consensus 302 fIDEiDal~~~r~~~~~--~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~ 379 (806)
T 3cf2_A 302 FIDELDAIAPKREKTHG--EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379 (806)
T ss_dssp EEESGGGTCCTTTTCCC--TTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHH
T ss_pred EEEHHCCCCCCCCCCCC--HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCHHHHCCCCCCEEEECCCCCHHHHHH
T ss_conf 98510023344577887--3999999999999746666698799996698032698885786361688668979899999
Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC----CCCCCEEEHHHHHHH
Q ss_conf 9999970333468899864589999743899957899999999999998302457789987----644625415679998
Q 004584 407 ILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPV----DEESIKVTMDDFLHA 482 (744)
Q Consensus 407 Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~----~~~~~~it~~df~~a 482 (744)
||+.++++++ +..++++..+|..|+||+|+||.++|++|++.|++|.....+..... ......++++||..|
T Consensus 380 IL~~~l~~~~----~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~A 455 (806)
T 3cf2_A 380 ILQIHTKNMK----LADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWA 455 (806)
T ss_dssp HHHHTCSSSE----ECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHH
T ss_pred HHHHHHCCCC----CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCEEEHHHHHHH
T ss_conf 9999856899----886438999997568998999999999999999984145120001332045522556519999999
Q ss_pred HHHHCCCCCCC----CCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 75204477666----64111133454021276035699999999988773179996143222489998439999998506
Q 004584 483 LYEIVPAFGAS----TDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS 558 (744)
Q Consensus 483 l~~~~ps~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLl~Gp~G~GKT~la~~~a~~~ 558 (744)
+..++|++..+ .+.+.|...+|+.+.+..+.+.+.++..+.+.+...+..+++++|||||||||||++|+++|.++
T Consensus 456 l~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~ 535 (806)
T 3cf2_A 456 LSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp HSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT
T ss_pred HHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 97287831123444578878888178899999999999756668999971488888607986687789639999999983
Q ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHCCCCC----CCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 999799902652002102457659999999885399859999151211001899----9641699999999986268999
Q 004584 559 DFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPI----GPRFSNIISQTMLVLLKRLPPK 634 (744)
Q Consensus 559 ~~~~i~v~~~~~l~g~~~~~~~~~i~~if~~a~~~~~~ii~lDEid~l~~~~~~----g~~~s~~~~~~Ll~~l~~~~~~ 634 (744)
+.+|+.+.+++ +++.|.++.+++++++|+.|++..||||||||||++...++. +...++++.+.||..|+++..
T Consensus 536 ~~~f~~v~~~~-l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~- 613 (806)
T 3cf2_A 536 QANFISIKGPE-LLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST- 613 (806)
T ss_dssp TCEEEECCHHH-HHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS-
T ss_pred CCCEEEECCCH-HHCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-
T ss_conf 89668742411-2103343689999999999997299635204256776315888889866999999999999748787-
Q ss_pred CCCEEEEEECCCCCCCCCCCCC-CCCCEEEECCCCCHHHHHHHHHHCC----CCCHHHHHHHHHH---CCCCCHHHHHHH
Q ss_conf 9849999927998988911113-5554277738999988999999804----9999999999986---899969999999
Q 004584 635 GKKLLVIGTTSEVSFLDSVGIC-DAFSVTYHVPTLKTDDAKKVLKQLN----VFAEEDVDSASEA---LNDMPIKKLYML 706 (744)
Q Consensus 635 ~~~v~vi~ttn~~~~l~~~~l~-~rf~~~i~~~~~~~~~~~~Il~~~~----~~~~~~i~~~~~~---~~~g~ir~l~~~ 706 (744)
..+|+||||||+|+.||++.+| +||+..|+||+|+.+++.+||+.+- ...+.++..+... +++.+++.+..-
T Consensus 614 ~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~ 693 (806)
T 3cf2_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQR 693 (806)
T ss_dssp SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHH
T ss_pred CCCEEEEEECCCCHHCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 79989999379804389847177855079997996999999999998567999877899999976899999999999999
Q ss_pred HHHHHHCCC-C----C--------CC--CCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 999980022-8----8--------40--00026887754616999999875
Q 004584 707 IEMAAQGEQ-G----G--------AA--EAIYSGREKIKISHFYDCLQDMV 742 (744)
Q Consensus 707 l~~a~~~a~-~----~--------~~--~~~~~~~~~It~~~~~~al~~~~ 742 (744)
.-+.+.... . . .. .........|+.+||.+|+..+.
T Consensus 694 A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ 744 (806)
T 3cf2_A 694 ACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFAR 744 (806)
T ss_dssp HHHHHHHHHHC-----------------------CCC----CCTTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 999999999985644433301574100123345668647999999998679
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=1.00 E-value=1 Score=576.63 Aligned_cols=614 Identities=26% Similarity=0.372 Sum_probs=479.7
Q ss_pred EEEEEEECCCCCCCCCCEEEECHHHHCCCCC-CCCCCEEEEEECCC---EEEEEEECCCCCCCCEEECHHHHHCCCCCCC
Q ss_conf 2489930599444543279959631202489-99972389982990---9999960799999937536977722585699
Q 004584 13 TTMNVINTPSADLALTNLAYCSPADLLNFRV-PNSNLFLASVAGDS---FVLSLASHPSVNKGQIALNSVQRRHAKVSTG 88 (744)
Q Consensus 13 ~~l~v~~~p~~~~~~tn~v~v~~~~~~~~~~-~G~~~~~v~i~g~~---~v~~~~~~~~~~~~~i~~~~~~r~~~~~~~~ 88 (744)
.+|+|..+...+. +.|+++|+.|..|++ +| ++|+|.|++ +|..+|+.+.++.+.|+|++..|.|+|+.+|
T Consensus 24 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (806)
T 1ypw_A 24 NRLIVDEAINEDN---SVVSLSQPKMDELQLFRG---DTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLG 97 (806)
T ss_dssp TEEEEECCSSCCS---SCEEECHHHHHHHTCCTT---CEEEEEETTTEECCEEEEECSSSCTTEEECCHHHHTTTTCCTT
T ss_pred CEEEECCCCCCCC---CEEEECHHHHHHCCCCCC---CEEEEECCCCCCEEEEEECCCCCCCCEEEECHHHHHHCCCCCC
T ss_conf 4589726767768---879888999997599999---8899936865737999964788899869964899966398889
Q ss_pred CEEEEEEEC-CCCCCEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHC--CCCCCCCCEEEEEECCEEEEEEEEEEEE
Q ss_conf 949999959-9986226869988634405886543478899999999821--8820169489999849179999987653
Q 004584 89 DHVSLNRFI-PPEDFNLALLTVELEFVKKGSKNEQVDAVLLANQLRKRFI--NQVMTAGQRVVFEYHGNNYIFTVNGAAV 165 (744)
Q Consensus 89 ~~v~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~v~~~~~ 165 (744)
|.|+|+++. ++.. ..|++... ..... .+..+.+..+++.+|. ++++.+|+.+.+......+.|+|+.+.|
T Consensus 98 ~~v~~~~~~~~~~~---~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~p 170 (806)
T 1ypw_A 98 DVISIQPCPDVKYG---KRIHVLPI--DDTVE--GITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDP 170 (806)
T ss_dssp CEEEEEECTTCCBC---SEEEEEEC--TTTSS--SCCSCCTTTTTGGGTTTTCCBCCTTCEEEECCSSSCEEEEEEEETT
T ss_pred CEEEEEECCCCCCC---CEEEEECC--CCCHH--HCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCEEEEEEECCC
T ss_conf 98999988778757---68998078--65222--1155067899999860078322689879954787605778873368
Q ss_pred CCCCCCCCCCCCEECCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 58554465544045687489997268985244114667665533467766322676760999999999998635799357
Q 004584 166 EGQEKSNALERGIITNETYFVFEASNDSGIKIVNQREGANSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHV 245 (744)
Q Consensus 166 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~ 245 (744)
...+.+.+.|.+.+....... ... . ...+.++|++ |+|++++++++ ++++..++.+|++
T Consensus 171 --------~~~~~v~~~t~~~~~~~~~~~---~~~-----~--~~~~~v~~~d--i~G~~~~~~~l-~e~i~~~l~~~~~ 229 (806)
T 1ypw_A 171 --------SPYCIVAPDTVIHCEGEPIKR---EDE-----E--ESLNEVGYDD--VGGCRKQLAQI-KEMVELPLRHPAL 229 (806)
T ss_dssp --------TTCCBCCSSSEEEECSCCCCC---CTT-----S--CCSSSCCGGG--CCSCSGGGGHH-HHHHHHHHHCGGG
T ss_pred --------CCCCEECCCEEEEECCCCCCC---HHH-----H--CCCCCCCHHH--HCCHHHHHHHH-HHHHHHHHHCHHH
T ss_conf --------887332688699855865541---122-----1--1357899888--28809999999-9999987429899
Q ss_pred HHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEE
Q ss_conf 74719988850899927999189999999999559973883421021012020499999999999820022499998169
Q 004584 246 TSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHV 325 (744)
Q Consensus 246 ~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~i~~~~~~~~~~g~~~~~i~~if~~a~~~~~~~~~~~~p~I 325 (744)
+..+++.+++++||+||||||||++|++++..++ ..+..++++++.+.+.|+.+..++.+|..+.... |++
T Consensus 230 ~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~-~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~--------p~i 300 (806)
T 1ypw_A 230 FKAIGVKPPRGILLYGPPGTGKTLIARAVANETG-AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA--------PAI 300 (806)
T ss_dssp GTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT-CEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHC--------SEE
T ss_pred HHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCC-CCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCE
T ss_conf 9863889997389989399987999999999719-9689997557654410158999999999998649--------957
Q ss_pred EEECCCCHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHCCCCCCCEEEEECCCCHHHHH
Q ss_conf 99917410000379888887407889999997402965789489999807887633331389963117997399977899
Q 004584 326 IIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRL 405 (744)
Q Consensus 326 i~iDEid~l~~~~~~~~~~~~~~~~i~~~Ll~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~ 405 (744)
+|+||+|.++++++... .+...+++.+|+..+++.....++++|++||+++.+|+++++++||+..+.++.|+.++|.
T Consensus 301 l~iDEid~l~~~~~~~~--~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~ 378 (806)
T 1ypw_A 301 IFIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378 (806)
T ss_dssp EEEESGGGTSCTTSCCC--SHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHH
T ss_pred EEECCHHHHHHCCCCCC--CHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHCCHHHHCCCCCCCCCCCCCCCHHHHH
T ss_conf 98300777511146663--1688999999999865411466178760239810049998646554443556999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC----CCCCCCCEEEHHHHHH
Q ss_conf 999999703334688998645899997438999578999999999999983024577899----8764462541567999
Q 004584 406 QILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTK----PVDEESIKVTMDDFLH 481 (744)
Q Consensus 406 ~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~----~~~~~~~~it~~df~~ 481 (744)
+|++.+++.+. +..+.++..++..++||+++++..++++|...+.++......... ........++.+||..
T Consensus 379 ~il~~~~~~~~----l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~ 454 (806)
T 1ypw_A 379 EILQIHTKNMK----LADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRW 454 (806)
T ss_dssp HHHHHTTTTSC----CCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHH
T ss_pred HHHHHHHHCCC----CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf 99999873387----76220067777761475368999999999999876420101155420101244455555665311
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHH-------HHHHCCCCCCEEEEEECCCCCCHHHHHHHH
Q ss_conf 8752044776666411113345402127603569999999998-------877317999614322248999843999999
Q 004584 482 ALYEIVPAFGASTDDLERSRLNGMVDCGDRHKHIYQRAMLLVE-------QVKVSKGSPLVTCLLEGPSGSGKTALAATA 554 (744)
Q Consensus 482 al~~~~ps~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~vLl~Gp~G~GKT~la~~~ 554 (744)
++....|+..... ........|.++.. ++.+++.+...+. .+...+..++.++||+||||||||++|+++
T Consensus 455 al~~~~~s~~~~~--~~~~~~v~~~di~g-l~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakal 531 (806)
T 1ypw_A 455 ALSQSNPSALRET--VVEVPQVTWEDIGG-LEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 531 (806)
T ss_dssp HHHHSCCCCCCCC--CCCCCCCSSCSSSC-CCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHH
T ss_pred CCCCCCCHHHHHH--CCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 1123571444200--02575421111244-30222218999975553639897548887753689779998789999999
Q ss_pred HHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHCCCCCCC----CHHHHHHHHHHHHHCC
Q ss_conf 850699979990265200210245765999999988539985999915121100189996----4169999999998626
Q 004584 555 GIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGP----RFSNIISQTMLVLLKR 630 (744)
Q Consensus 555 a~~~~~~~i~v~~~~~l~g~~~~~~~~~i~~if~~a~~~~~~ii~lDEid~l~~~~~~g~----~~s~~~~~~Ll~~l~~ 630 (744)
|..++.+|+.+.+++. .+.+.++....++.+|+.++...|+|+||||||++...+.... .....+++.|+..|++
T Consensus 532 a~~~~~~~i~v~~~~l-~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~ 610 (806)
T 1ypw_A 532 ANECQANFISIKGPEL-LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 610 (806)
T ss_dssp HHHHTCCCCCCCCSSS-TTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHCCCEEEEECHHH-HHHHCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 9984898799861676-553057547889999999870698599998744542112687777641689999999998754
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCCC-CCCCEEEECCCCCHHHHHHHHHHC
Q ss_conf 89999849999927998988911113-555427773899998899999980
Q 004584 631 LPPKGKKLLVIGTTSEVSFLDSVGIC-DAFSVTYHVPTLKTDDAKKVLKQL 680 (744)
Q Consensus 631 ~~~~~~~v~vi~ttn~~~~l~~~~l~-~rf~~~i~~~~~~~~~~~~Il~~~ 680 (744)
... ...++||+|||.++.+|++.++ +||+..++||+|+.+++..|++.+
T Consensus 611 ~~~-~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~ 660 (806)
T 1ypw_A 611 MST-KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN 660 (806)
T ss_dssp ------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTT
T ss_pred CCC-CCCEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHHHHHHH
T ss_conf 566-68769998438712279878376556730555997999999999998
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=400.41 Aligned_cols=287 Identities=31% Similarity=0.531 Sum_probs=254.9
Q ss_pred CCCCEECCCCEEEEEECCCCCEEEECCCCCC---CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHC
Q ss_conf 5440456874899972689852441146676---6553346776632267676099999999999863579935774719
Q 004584 174 LERGIITNETYFVFEASNDSGIKIVNQREGA---NSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLG 250 (744)
Q Consensus 174 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g 250 (744)
.+...+.+.+.+.+.........+.+....+ ...+.+.|+++|+| |||++++++++ ++++.+|+.+|++|..+|
T Consensus 102 ~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~d--IgGl~~~k~~l-~e~v~~Pl~~pe~f~~~g 178 (405)
T 4b4t_J 102 INVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDM--VGGLTKQIKEI-KEVIELPVKHPELFESLG 178 (405)
T ss_dssp SCTTTCCSSCEEEEETTTCSCCEECCCCCSCCTTSCEEECSCSCCGGG--SCSCHHHHHHH-HHHTHHHHHCHHHHHHHT
T ss_pred CCHHHCCCCCEEEEECCCCEEEEECCCCCCCHHHHCCCCCCCCCCHHH--HCCHHHHHHHH-HHHHHHHHHCHHHHHHCC
T ss_conf 578668875344230554011120576658466613555799998888--28889999999-999999874999998679
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC
Q ss_conf 98885089992799918999999999955997388342102101202049999999999982002249999816999917
Q 004584 251 IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDE 330 (744)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~i~~~~~~~~~~g~~~~~i~~if~~a~~~~~~~~~~~~p~Ii~iDE 330 (744)
+++|+|+|||||||||||++|+++|++++ .+++.++++++.++|+|++++.++.+|..|+... ||||||||
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~-~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~a--------P~IIFiDE 249 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTD-CKFIRVSGAELVQKYIGEGSRMVRELFVMAREHA--------PSIIFMDE 249 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHT-CEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTC--------SEEEEEES
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHC-CCCEEEEHHHHHCCCCCHHHHHHHHHHHHHHHHC--------CCEEEEEC
T ss_conf 99888258858999987899999998518-8852888689511335468999999999998709--------94676533
Q ss_pred CCHHCCCCCCCCC-CCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHCCCCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 4100003798888-874078899999974029657894899998078876333313899631179973999778999999
Q 004584 331 IDAICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQ 409 (744)
Q Consensus 331 id~l~~~~~~~~~-~~~~~~~i~~~Ll~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~ 409 (744)
+|+++++|....+ +.....+++++||..|||+....+|+||++||+|+.||||++|||||++.|++++||.++|.+||+
T Consensus 250 iDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~ 329 (405)
T 4b4t_J 250 IDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILR 329 (405)
T ss_dssp SSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHH
T ss_pred CHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHCCHHHCCCCCCCEEEECCCCCHHHHHHHHH
T ss_conf 41111577888999768999999999996043388887578812698144899672877676699769969999999999
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCC
Q ss_conf 99703334688998645899997438999578999999999999983024577899876446254156799987520447
Q 004584 410 IHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPA 489 (744)
Q Consensus 410 ~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps 489 (744)
.|+++++ +..++++..+|+.|+||+|+||.++|++|++.|+++. ...|+++||..|+.++.+.
T Consensus 330 ~~~~~~~----l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~-------------~~~vt~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 330 IHSRKMN----LTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRER-------------RIHVTQEDFELAVGKVMNK 392 (405)
T ss_dssp HHHTTSB----CCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT-------------CSBCCHHHHHHHHHHHHHH
T ss_pred HHHCCCC----CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC-------------CCCCCHHHHHHHHHHHHCC
T ss_conf 9855999----9965799999987799999999999999999999869-------------9875999999999998572
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=392.42 Aligned_cols=323 Identities=25% Similarity=0.432 Sum_probs=268.9
Q ss_pred HHHCCCCCCCCCEEEEEECCEEEEEEEEEEEECCCCC----CCCCCCCEECCCCEEEEEECCCCCEEEECCCCCC---CC
Q ss_conf 9821882016948999984917999998765358554----4655440456874899972689852441146676---65
Q 004584 134 KRFINQVMTAGQRVVFEYHGNNYIFTVNGAAVEGQEK----SNALERGIITNETYFVFEASNDSGIKIVNQREGA---NS 206 (744)
Q Consensus 134 ~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~---~~ 206 (744)
..+.+-++..|+...+ .+.. .+.|.+ .+ +++. ....+...+.+.+.+.+.....+.+.+.+....+ ..
T Consensus 97 ~~~~~~p~~~g~~~~~--~~~~-~~iv~~-~~-~~~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~d~~~~~~ 171 (437)
T 4b4t_I 97 EEIRGNPLSIGTLEEI--IDDD-HAIVTS-PT-MPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVM 171 (437)
T ss_dssp HHHHCSSEEEEEEEEE--CTTS-EEEEEC-SS-SCCCEEECCTTSCGGGCCTTCEEEECTTTCCEEEEECCCSSCCCCCC
T ss_pred HHHCCCCCEEEEEEEE--ECCC-EEEEEC-CC-CCEEEEECCCCCCHHHCCCCCEEEEECCCCCCEEECCCCCCCCCEEE
T ss_conf 8626899546899998--3498-799981-89-98899953553578675678689995467522000677668745255
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 53346776632267676099999999999863579935774719988850899927999189999999999559973883
Q 004584 207 NIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIV 286 (744)
Q Consensus 207 ~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~i 286 (744)
.+.+.|+++|+| |||+++++++| ++.+.+|+.+|+.|..+|+++|+|||||||||||||++|+++|++++ ..++.+
T Consensus 172 ~~~~~p~v~~~D--IgGld~~k~~L-~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~-~~fi~v 247 (437)
T 4b4t_I 172 KMDKSPTESYSD--IGGLESQIQEI-KESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS-ATFLRI 247 (437)
T ss_dssp EEESSCCCCGGG--TCSCHHHHHHH-HHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT-CEEEEE
T ss_pred EECCCCCCCCEE--CCCHHHHHHHH-HHHHHHHHHCHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHC-CCEEEE
T ss_conf 433689986005--57699999999-99999987699999867999777884488999639999999999859-987998
Q ss_pred CCCCHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHCCCCCCCCC-CCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 421021012020499999999999820022499998169999174100003798888-8740788999999740296578
Q 004584 287 NGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESL 365 (744)
Q Consensus 287 ~~~~~~~~~~g~~~~~i~~if~~a~~~~~~~~~~~~p~Ii~iDEid~l~~~~~~~~~-~~~~~~~i~~~Ll~~~d~~~~~ 365 (744)
+++++.++|+|++++.++.+|..|+... ||||||||+|+++++|..... +.....+++.+||..||++...
T Consensus 248 ~~s~l~sk~vGesek~ir~lF~~Ar~~a--------P~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~ 319 (437)
T 4b4t_I 248 VGSELIQKYLGDGPRLCRQIFKVAGENA--------PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR 319 (437)
T ss_dssp ESGGGCCSSSSHHHHHHHHHHHHHHHTC--------SEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS
T ss_pred EHHHHHHCCCCHHHHHHHHHHHHHHHCC--------CCEEEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 8799531447669999999999998659--------91898761222036677888776589999999999972476788
Q ss_pred CCEEEEEEECCCCCCCHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHH
Q ss_conf 94899998078876333313899631179973999778999999997033346889986458999974389995789999
Q 004584 366 NNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGV 445 (744)
Q Consensus 366 ~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l 445 (744)
.+++||+|||+++.||||++|||||++.|+|++||.++|.+||+.|+++++ +..++++..+|+.|+||+|+||.++
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~----l~~dvdl~~LA~~T~GfSGADI~~l 395 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN----LSEDVNLETLVTTKDDLSGADIQAM 395 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC----BCSCCCHHHHHHHCCSCCHHHHHHH
T ss_pred CCEEEEEECCCHHHCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCC----CCCCCCHHHHHHHCCCCCHHHHHHH
T ss_conf 997999957980555998864886027998089699999999999964899----9976799999976799989999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCC
Q ss_conf 999999999830245778998764462541567999875204477
Q 004584 446 AKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPAF 490 (744)
Q Consensus 446 ~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~ 490 (744)
|++|++.|+++. ...|+++||..|++.+.|+.
T Consensus 396 ~~eA~~~Air~~-------------~~~It~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 396 CTEAGLLALRER-------------RMQVTAEDFKQAKERVMKNK 427 (437)
T ss_dssp HHHHHHHHHHTT-------------CSCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-------------CCCCCHHHHHHHHHHHHCCC
T ss_conf 999999999848-------------99669999999999870798
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=389.15 Aligned_cols=288 Identities=31% Similarity=0.471 Sum_probs=251.9
Q ss_pred CCCEECCCCEEEEEECCCCCEEEECCCCCC---CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCC
Q ss_conf 440456874899972689852441146676---65533467766322676760999999999998635799357747199
Q 004584 175 ERGIITNETYFVFEASNDSGIKIVNQREGA---NSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGI 251 (744)
Q Consensus 175 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~ 251 (744)
+...+.+.+.+.+.......+.+++....+ .....+.|+++|++ |||++++++++ ++.+.+|+.+|+.|..+|+
T Consensus 136 ~~~~l~~~~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~~t~~d--igGl~~~k~~l-~e~v~~pl~~pe~f~~~g~ 212 (434)
T 4b4t_M 136 DPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSD--VGGLDKQIEEL-VEAIVLPMKRADKFKDMGI 212 (434)
T ss_dssp CTTTSCSSEEEEECSSSCSEEEEEEESSSCSCSCCEEESSCSCCGGG--SCSCHHHHHHH-HHHTHHHHHCSHHHHHHCC
T ss_pred CHHHCCCCCEEEECCCCHHHHEECCCCCCCHHHHCCCCCCCCCCHHH--CCCHHHHHHHH-HHHHHHHHHCHHHHHHCCC
T ss_conf 78678989878675765345301686547313432668897998676--09579999999-9999999749999986799
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCC
Q ss_conf 88850899927999189999999999559973883421021012020499999999999820022499998169999174
Q 004584 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEI 331 (744)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~i~~~~~~~~~~g~~~~~i~~if~~a~~~~~~~~~~~~p~Ii~iDEi 331 (744)
++|+|+|||||||||||++|+++|++++ .+++.++++++.++|+|++++.++.+|..|.... ||||||||+
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~~-~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~a--------P~IifiDEi 283 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQTN-ATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKA--------PTIIFIDEL 283 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT-CEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHC--------SEEEEEECT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHC-CCEEEEEHHHHHHCCCCHHHHHHHHHHHHHHHCC--------CEEEEECCH
T ss_conf 9887268779499988999999999959-9889986446431345638999999999998619--------908960332
Q ss_pred CHHCCCCCCCCC-CCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHCCCCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 100003798888-8740788999999740296578948999980788763333138996311799739997789999999
Q 004584 332 DAICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQI 410 (744)
Q Consensus 332 d~l~~~~~~~~~-~~~~~~~i~~~Ll~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~ 410 (744)
|+++++|..... +.....+++++||..||++....+|+|||+||+|+.||||++|||||++.|+|++||.++|.+||+.
T Consensus 284 Dal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~ 363 (434)
T 4b4t_M 284 DAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQI 363 (434)
T ss_dssp HHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHCCHHHHCCCCEEEEEEECCCCHHHHHHHHHH
T ss_conf 56652257788887469999999999971366888998999948992233996715774038998089599999999999
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCC
Q ss_conf 97033346889986458999974389995789999999999999830245778998764462541567999875204477
Q 004584 411 HTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPAF 490 (744)
Q Consensus 411 ~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~ 490 (744)
|+++++ +..++++..+|+.|+||+|+||.++|++|++.|+++. ...|+++||..|+.+++|+.
T Consensus 364 ~~~~~~----~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~-------------~~~i~~~Df~~Al~~v~~~~ 426 (434)
T 4b4t_M 364 HSRKMT----TDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG-------------QSSVKHEDFVEGISEVQARK 426 (434)
T ss_dssp HHHHSC----BCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT-------------CSSBCHHHHHHHHHSCSSSC
T ss_pred HHCCCC----CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC-------------CCCCCHHHHHHHHHHHHCCC
T ss_conf 856899----9876799999986899899999999999999999869-------------98769999999999973777
Q ss_pred C
Q ss_conf 6
Q 004584 491 G 491 (744)
Q Consensus 491 ~ 491 (744)
.
T Consensus 427 ~ 427 (434)
T 4b4t_M 427 S 427 (434)
T ss_dssp C
T ss_pred C
T ss_conf 7
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=389.05 Aligned_cols=288 Identities=31% Similarity=0.553 Sum_probs=252.6
Q ss_pred CCCCEECCCCEEEEEECCCCCEEEECCCCCC---CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHC
Q ss_conf 5440456874899972689852441146676---6553346776632267676099999999999863579935774719
Q 004584 174 LERGIITNETYFVFEASNDSGIKIVNQREGA---NSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLG 250 (744)
Q Consensus 174 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g 250 (744)
.....+.+.+.+.+.........+.+....+ ...+.+.|+++|++ |||++++++++ ++++.+|+.+|++|..+|
T Consensus 135 ~~~~~l~~g~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~d--igGl~~~k~~l-~e~v~~pl~~p~~f~~~g 211 (437)
T 4b4t_L 135 VDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDG--IGGLTEQIREL-REVIELPLKNPEIFQRVG 211 (437)
T ss_dssp SCTTSCCTTCEEEECSSSCSEEEECCCCSCCCCSSCEEEESCSSCSGG--GCSCHHHHHHH-HHHHHHHHHCHHHHHHHC
T ss_pred CCHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHEEEECCCCCCCHHH--HCCHHHHHHHH-HHHHHHHHHCHHHHHHCC
T ss_conf 678665988502475531668875475447423301331599989667--17859999999-999999874999998679
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC
Q ss_conf 98885089992799918999999999955997388342102101202049999999999982002249999816999917
Q 004584 251 IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDE 330 (744)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~i~~~~~~~~~~g~~~~~i~~if~~a~~~~~~~~~~~~p~Ii~iDE 330 (744)
+++|+|+|||||||||||++|+++|++++ .+++.++++++.++|.|+++..++.+|..|.... ||||||||
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~-~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~--------P~IifiDE 282 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIG-ANFIFSPASGIVDKYIGESARIIREMFAYAKEHE--------PCIIFMDE 282 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT-CEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSC--------SEEEEEEC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHC-CCEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHCC--------CCEEEEEC
T ss_conf 89787699989999849999999999859-9989984146205520178999999999998638--------96464204
Q ss_pred CCHHCCCCCCCCC-CCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHCCCCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 4100003798888-874078899999974029657894899998078876333313899631179973999778999999
Q 004584 331 IDAICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQ 409 (744)
Q Consensus 331 id~l~~~~~~~~~-~~~~~~~i~~~Ll~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~ 409 (744)
+|+++++|..... ......+++++||..|||+....+++||++||+|+.||||++|||||++.|+|++||.++|.+||+
T Consensus 283 iDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~ 362 (437)
T 4b4t_L 283 VDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFK 362 (437)
T ss_dssp CCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHCHHHHCCCCCCEEEECCCCCHHHHHHHHH
T ss_conf 43333333447887536899999999998346667798699993399033189782777102001359969999999999
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCC
Q ss_conf 99703334688998645899997438999578999999999999983024577899876446254156799987520447
Q 004584 410 IHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPA 489 (744)
Q Consensus 410 ~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps 489 (744)
.|+++++ +..++++..+|+.|+||+|+||.++|++|++.|+++. ...|+++||..|++.+.|.
T Consensus 363 ~~~~~~~----~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~-------------~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 363 IHTAKVK----KTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDD-------------RDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp HHHHTSC----BCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTT-------------CSSBCHHHHHHHHHHHHHT
T ss_pred HHHCCCC----CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC-------------CCCCCHHHHHHHHHHHHHC
T ss_conf 9865899----9864589999976899999999999999999999869-------------9877999999999998750
Q ss_pred C
Q ss_conf 7
Q 004584 490 F 490 (744)
Q Consensus 490 ~ 490 (744)
.
T Consensus 426 ~ 426 (437)
T 4b4t_L 426 K 426 (437)
T ss_dssp C
T ss_pred C
T ss_conf 3
No 7
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=385.64 Aligned_cols=287 Identities=31% Similarity=0.487 Sum_probs=251.7
Q ss_pred CCCCEECCCCEEEEEECCCCCEEEECCCCCCC---CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHC
Q ss_conf 54404568748999726898524411466766---553346776632267676099999999999863579935774719
Q 004584 174 LERGIITNETYFVFEASNDSGIKIVNQREGAN---SNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLG 250 (744)
Q Consensus 174 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g 250 (744)
.+...+.+.+.+.+.....+.+.+.+....+. ..+-+.|+++|+| |||+++++++| ++++.+|+.+|+.|..+|
T Consensus 163 ~~~~~l~~g~~v~l~~~~~~i~~~lp~~~d~~v~~m~v~e~P~vt~~D--IgGl~~~k~~L-~e~V~~pl~~pe~f~~~G 239 (467)
T 4b4t_H 163 VSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSD--VGGCKDQIEKL-REVVELPLLSPERFATLG 239 (467)
T ss_dssp CCSSSCCTTCEECSCTTSCCCCCSSCSSSCCCCCCCEEESSCSCCCSS--CTTCHHHHHHH-HHHTHHHHHCHHHHHHHT
T ss_pred CCHHHCCCCCEEEECCCCCEEEECCCCCCCCCCCEEEECCCCCCCHHH--HCCHHHHHHHH-HHHHHHHHCCHHHHHHCC
T ss_conf 788778988788774675444661887658755020015799998788--54599999999-999998842999998779
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC
Q ss_conf 98885089992799918999999999955997388342102101202049999999999982002249999816999917
Q 004584 251 IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDE 330 (744)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~i~~~~~~~~~~g~~~~~i~~if~~a~~~~~~~~~~~~p~Ii~iDE 330 (744)
+++|+|+|||||||||||++|+++|++++ ..++.++++++.++|+|++++.++.+|..|+... ||||||||
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~~-~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~a--------P~IIfiDE 310 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRTD-ATFIRVIGSELVQKYVGEGARMVRELFEMARTKK--------ACIIFFDE 310 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHHT-CEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTC--------SEEEEEEC
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHCCC-CCEEEEEHHHHHCCCCCHHHHHHHHHHHHHHHCC--------CCEEEECC
T ss_conf 99998147648999809999999984468-9869988699502667789999999999987617--------84675223
Q ss_pred CCHHCCCCCCCCC-CCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHCCCCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 4100003798888-874078899999974029657894899998078876333313899631179973999778999999
Q 004584 331 IDAICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQ 409 (744)
Q Consensus 331 id~l~~~~~~~~~-~~~~~~~i~~~Ll~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~ 409 (744)
+|+++++|..... ......+.++++|..||++....+|+||++||+++.||||++|||||++.|+|++|+.++|.+||+
T Consensus 311 iDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk 390 (467)
T 4b4t_H 311 IDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFR 390 (467)
T ss_dssp CTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHH
T ss_conf 21101355676778627899999999998655578883798828789311795463666550799838969999999999
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCC
Q ss_conf 99703334688998645899997438999578999999999999983024577899876446254156799987520447
Q 004584 410 IHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPA 489 (744)
Q Consensus 410 ~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps 489 (744)
.|+++++ +..++++..||+.|+||+|+||.++|++|++.|+++. ...++++||..|++++.+.
T Consensus 391 ~~l~~~~----l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~-------------~~~it~~Df~~Al~kV~~g 453 (467)
T 4b4t_H 391 IHSKSMS----VERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR-------------RKVATEKDFLKAVDKVISG 453 (467)
T ss_dssp HHHTTSC----BCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT-------------CSSBCHHHHHHHHHHHHHH
T ss_pred HHHCCCC----CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC-------------CCCCCHHHHHHHHHHHHCC
T ss_conf 9854899----9877799999977799999999999999999999838-------------8766999999999999647
No 8
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=1.00 E-value=1 Score=380.43 Aligned_cols=446 Identities=30% Similarity=0.434 Sum_probs=349.6
Q ss_pred EEEEEEECCCCCCCCCCEEEECHHHHCCCCC-CCCCCEEEEEECCC---EEEEEEECCCCCCCCEEECHHHHHCCCCCCC
Q ss_conf 2489930599444543279959631202489-99972389982990---9999960799999937536977722585699
Q 004584 13 TTMNVINTPSADLALTNLAYCSPADLLNFRV-PNSNLFLASVAGDS---FVLSLASHPSVNKGQIALNSVQRRHAKVSTG 88 (744)
Q Consensus 13 ~~l~v~~~p~~~~~~tn~v~v~~~~~~~~~~-~G~~~~~v~i~g~~---~v~~~~~~~~~~~~~i~~~~~~r~~~~~~~~ 88 (744)
.+|+|..+...+ .+.||+||+.|.+|++ +| ++|+|.|++ ++..+++.++++++.|+|++..|+|+|+++|
T Consensus 24 ~~~~v~~~~~~d---~~~~~~~~~~~~~l~~~~g---d~v~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~~~~g 97 (489)
T 3hu3_A 24 NRLIVDEAINED---NSVVSLSQPKMDELQLFRG---DTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLG 97 (489)
T ss_dssp TEEEEECCTTCC---TTEEEECHHHHHHHTCCTT---CEEEEECSTTCEEEEEEEECTTSCTTEEECCHHHHHHTTCCTT
T ss_pred CEEEECCCCCCC---CCEEEECHHHHHHCCCCCC---CEEEEECCCCCCEEEEEEECCCCCCCEEEECHHHHHHCCCCCC
T ss_conf 725975677776---8789989999997699999---9899926866737999950787899979956899965398899
Q ss_pred CEEEEEEEC-CCCCCEEEEEEEE-EEEEECCCCCCCCCHHHHHHHHHHHHCC--CCCCCCCEEEEEECCEEEEEEEEEEE
Q ss_conf 949999959-9986226869988-6344058865434788999999998218--82016948999984917999998765
Q 004584 89 DHVSLNRFI-PPEDFNLALLTVE-LEFVKKGSKNEQVDAVLLANQLRKRFIN--QVMTAGQRVVFEYHGNNYIFTVNGAA 164 (744)
Q Consensus 89 ~~v~v~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~v~~~~ 164 (744)
|.|+|+++. .+. ...|.+. ++..... +....+.-+.|..... .++..|+.+.+......+.|.+....
T Consensus 98 d~v~v~~~~~~~~---a~~v~~~~~~~av~a-----~~~ga~d~~~Kp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (489)
T 3hu3_A 98 DVISIQPCPDVKY---GKRIHVLPIDDTVEG-----ITGNLFEVYLKPYFLEAYRPIRKGDIFLVHGGMRAVEFKVVETD 169 (489)
T ss_dssp CEEEEEECTTCCB---CSEEEEEEBGGGSSS-----CCSCHHHHTHHHHHTTTCEEEETTCEEEEEETTEEEEEEEEEEE
T ss_pred CEEEEEECCCCCC---CCEEEECCCCCCCCC-----CCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEEEEEC
T ss_conf 9899998888874---678998379865232-----45305788867877405842036888996578846879998413
Q ss_pred ECCCCCCCCCCCCEECCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 35855446554404568748999726898524411466766553346776632267676099999999999863579935
Q 004584 165 VEGQEKSNALERGIITNETYFVFEASNDSGIKIVNQREGANSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPH 244 (744)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~ 244 (744)
+ .....++++|.+.+....... .. ... ..+...|++ |+|++.+++++ ++++..++.+|+
T Consensus 170 ~--------~~~~~~~~~t~~~~~~~~~~~---~~-----~~~--~~~~~~~~~--i~G~~~~~~~l-~~~i~~~l~~~~ 228 (489)
T 3hu3_A 170 P--------SPYCIVAPDTVIHCEGEPIKR---ED-----EEE--SLNEVGYDD--IGGCRKQLAQI-KEMVELPLRHPA 228 (489)
T ss_dssp S--------SSEEEECTTCEEECCSSCBCH---HH-----HHH--HHTCCCGGG--CCSCHHHHHHH-HHHTHHHHHCHH
T ss_pred C--------CCCEEECCCEEEEECCCCCCC---CC-----CCC--CCCCCCHHH--CCCHHHHHHHH-HHHHHHHHHCHH
T ss_conf 7--------886697688189973676554---44-----333--457899888--08979999999-999998855989
Q ss_pred HHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf 77471998885089992799918999999999955997388342102101202049999999999982002249999816
Q 004584 245 VTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLH 324 (744)
Q Consensus 245 ~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~i~~~~~~~~~~g~~~~~i~~if~~a~~~~~~~~~~~~p~ 324 (744)
++..+|..+++++|||||||||||++|+++++.+ +..+..++|+++.+.+.|+.+..++.+|..+.... |+
T Consensus 229 ~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~-~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~--------p~ 299 (489)
T 3hu3_A 229 LFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA--------PA 299 (489)
T ss_dssp HHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC-SSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTC--------SE
T ss_pred HHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHH-CCCEEEEECHHHHHHHCCHHHHHHHHHHHHHHHCC--------CC
T ss_conf 9986499999758999969989999999999986-99889997457654421326789999999999639--------90
Q ss_pred EEEECCCCHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHCCCCCCCEEEEECCCCHHHH
Q ss_conf 99991741000037988888740788999999740296578948999980788763333138996311799739997789
Q 004584 325 VIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGR 404 (744)
Q Consensus 325 Ii~iDEid~l~~~~~~~~~~~~~~~~i~~~Ll~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r 404 (744)
+|||||||.+.++++... .+...+++++|+..+++.....++++|++||+++.++++++++|||+..+++++|+.++|
T Consensus 300 iLfLDEId~l~~~~~~~~--~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR 377 (489)
T 3hu3_A 300 IIFIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377 (489)
T ss_dssp EEEEESHHHHCBCTTSCC--CHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred EEEECCHHHHCCCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHCCCCCCEEEEECCCCHHHH
T ss_conf 899646555234554454--257899999999875312467866999854883226987827776746998279799999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC----CCCCCEEEHHHHH
Q ss_conf 999999970333468899864589999743899957899999999999998302457789987----6446254156799
Q 004584 405 LQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPV----DEESIKVTMDDFL 480 (744)
Q Consensus 405 ~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~----~~~~~~it~~df~ 480 (744)
.+||+.+++.+. +..+.++..++..+.||+++||.++|++|.+.+.++.....+..... ......++++||.
T Consensus 378 ~~IL~~~~~~~~----l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~ 453 (489)
T 3hu3_A 378 LEILQIHTKNMK----LADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFR 453 (489)
T ss_dssp HHHHHHHTTTSC----BCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHH
T ss_pred HHHHHHHHHCCC----CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCHHHHH
T ss_conf 999999984189----8621339999997569769999999999999999730233553201255233046767899999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 987520447766664111133454021276
Q 004584 481 HALYEIVPAFGASTDDLERSRLNGMVDCGD 510 (744)
Q Consensus 481 ~al~~~~ps~~~~~~~l~~~~~~~~~~~~~ 510 (744)
.|+..++|+..+.. ........|.++|+
T Consensus 454 ~Al~~~~ps~~re~--~~e~p~v~W~dig~ 481 (489)
T 3hu3_A 454 WALSQSNPSALRET--VVEVPQVTWEDIGG 481 (489)
T ss_dssp HHHTSHHHHHHHGG--GC------------
T ss_pred HHHHHCCCHHHHCC--CCCCCCCCHHHCCC
T ss_conf 99976774241013--43179988977189
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=379.11 Aligned_cols=266 Identities=35% Similarity=0.602 Sum_probs=237.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCC
Q ss_conf 46776632267676099999999999863579935774719988850899927999189999999999559973883421
Q 004584 210 RHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGP 289 (744)
Q Consensus 210 ~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~i~~~ 289 (744)
+.|++.|++ |||+++.++++ ++++..|+.+|+.|.++|.++++|+|||||||||||++|+++|+++ +.+++.++++
T Consensus 470 ~~p~v~w~d--iggl~~~k~~l-~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~-~~~f~~v~~~ 545 (806)
T 3cf2_A 470 EVPQVTWED--IGGLEDVKREL-QELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISIKGP 545 (806)
T ss_dssp BCCCCCSTT--CCSCHHHHHHH-TTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT-TCEEEECCHH
T ss_pred CCCCCCHHH--HCCHHHHHHHH-HHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHH-CCCEEEECCC
T ss_conf 578878888--17889999999-9999756668999971488888607986687789639999999983-8966874241
Q ss_pred CHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHCCCCCCC-CCCCCCHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 0210120204999999999998200224999981699991741000037988-888740788999999740296578948
Q 004584 290 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGST-RDGTGVHDSIVNQLLTKIDGVESLNNV 368 (744)
Q Consensus 290 ~~~~~~~g~~~~~i~~if~~a~~~~~~~~~~~~p~Ii~iDEid~l~~~~~~~-~~~~~~~~~i~~~Ll~~~d~~~~~~~v 368 (744)
+++++|+|+++++++++|+.|+... ||||||||+|+++++|+.. .++.+..++++++||.+|||+....+|
T Consensus 546 ~l~s~~vGese~~vr~lF~~Ar~~~--------P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V 617 (806)
T 3cf2_A 546 ELLTMWFGESEANVREIFDKARQAA--------PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNV 617 (806)
T ss_dssp HHHTTTCSSCHHHHHHHHHHHHTTC--------SEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSE
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHCC--------CCEEECHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 1210334368999999999999729--------96352042567763158888898669999999999997487877998
Q ss_pred EEEEEECCCCCCCHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99998078876333313899631179973999778999999997033346889986458999974389995789999999
Q 004584 369 LLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKS 448 (744)
Q Consensus 369 ~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~ 448 (744)
+|||+||+|+.||+|++|||||++.|++++||.++|.+||+.++++++ +..++++..||+.|+||||+||.++|++
T Consensus 618 ~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~----~~~~~dl~~la~~t~g~SGadi~~l~~~ 693 (806)
T 3cf2_A 618 FIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP----VAKDVDLEFLAKMTNGFSGADLTEICQR 693 (806)
T ss_dssp EEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC------CCC----------------CHHHHHHH
T ss_pred EEEEECCCCHHCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCC----CCCCCCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 999937980438984717785507999799699999999999856799----9877899999976899999999999999
Q ss_pred HHHHHHHHCCCCCCCCC------------CCCCCCCEEEHHHHHHHHHHHCCCCC
Q ss_conf 99999983024577899------------87644625415679998752044776
Q 004584 449 AVSFALNRQLSMDDLTK------------PVDEESIKVTMDDFLHALYEIVPAFG 491 (744)
Q Consensus 449 A~~~a~~r~~~~~~~~~------------~~~~~~~~it~~df~~al~~~~ps~~ 491 (744)
|++.|+++.+....... ........|+++||..|+..++|+..
T Consensus 694 A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs 748 (806)
T 3cf2_A 694 ACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVS 748 (806)
T ss_dssp HHHHHHHHHHC-----------------------CCC----CCTTTC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 9999999999856444333015741001233456686479999999986799999
No 10
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=378.86 Aligned_cols=288 Identities=29% Similarity=0.465 Sum_probs=250.6
Q ss_pred CCCCEECCCCEEEEEECCCCCEEEECCCCCC---CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHC
Q ss_conf 5440456874899972689852441146676---6553346776632267676099999999999863579935774719
Q 004584 174 LERGIITNETYFVFEASNDSGIKIVNQREGA---NSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLG 250 (744)
Q Consensus 174 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g 250 (744)
.+...+.+.+.+.+.........+.+....+ ...+.+.|+++|+| |||++++++++ ++.+..|+.+|+.|..+|
T Consensus 126 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~d~~v~~~~~~~~p~v~~~d--igGl~~~k~~l-~e~v~~pl~~p~~~~~~g 202 (428)
T 4b4t_K 126 LDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYAD--VGGLDMQKQEI-REAVELPLVQADLYEQIG 202 (428)
T ss_dssp SCTTTCCTTCEEEECSSSCCEEEEECSCCCCSSCCCEEESSCSCCGGG--SCSCHHHHHHH-HHHHHHHHHCHHHHHHHC
T ss_pred CCHHHCCCCCEEEEECCHHHHHHHCCCCCCCCHHHCCCCCCCCCCHHH--HCCHHHHHHHH-HHHHHHHHHCHHHHHHCC
T ss_conf 058557887656652330367763685447513432677899998888--51699999999-999999873999998679
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC
Q ss_conf 98885089992799918999999999955997388342102101202049999999999982002249999816999917
Q 004584 251 IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDE 330 (744)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~i~~~~~~~~~~g~~~~~i~~if~~a~~~~~~~~~~~~p~Ii~iDE 330 (744)
+++|+|+|||||||||||++|+++|++++ .+++.++++++.++|+|+++..++.+|..|+... ||||||||
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~-~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~a--------P~IifiDE 273 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTK-AAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENA--------PSIIFIDE 273 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHT-CEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTC--------SEEEEEEC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHC-CCEEEEECCHHHCCCCCHHHHHHHHHHHHHHHCC--------CCEEECHH
T ss_conf 99886588889899888999999999867-9969993304431454605999999999999739--------97463002
Q ss_pred CCHHCCCCCCCCC-CCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHCCCCCCCEEEEEC-CCCHHHHHHHH
Q ss_conf 4100003798888-874078899999974029657894899998078876333313899631179973-99977899999
Q 004584 331 IDAICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEIS-LPDENGRLQIL 408 (744)
Q Consensus 331 id~l~~~~~~~~~-~~~~~~~i~~~Ll~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~-~Pd~~~r~~Il 408 (744)
+|+++++|..... +.....+++++||..|||+....+++||+|||+++.||||++|||||++.|+|| +|+.++|.+||
T Consensus 274 iD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il 353 (428)
T 4b4t_K 274 VDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIF 353 (428)
T ss_dssp THHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCHHHHCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 24330355678788871899999999998438787799799996198155696663687515999819999999999999
Q ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHHHHH-C
Q ss_conf 999703334688998645899997438999578999999999999983024577899876446254156799987520-4
Q 004584 409 QIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI-V 487 (744)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~-~ 487 (744)
+.++++++ +.+++++..+|..|+||+|+||.++|++|++.|+++. ...++++||..|+... +
T Consensus 354 ~~~~~~~~----l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~-------------~~~i~~~d~~~A~~~~~~ 416 (428)
T 4b4t_K 354 GTIASKMS----LAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN-------------RYVILQSDLEEAYATQVK 416 (428)
T ss_dssp HHHHHSSC----BCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT-------------CSSBCHHHHHHHHHHHSC
T ss_pred HHHHCCCC----CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC-------------CCCCCHHHHHHHHHHHHC
T ss_conf 99855799----9963589999977799889999999999999999879-------------987799999999997617
Q ss_pred CCC
Q ss_conf 477
Q 004584 488 PAF 490 (744)
Q Consensus 488 ps~ 490 (744)
+..
T Consensus 417 ~~~ 419 (428)
T 4b4t_K 417 TDN 419 (428)
T ss_dssp SCC
T ss_pred CCC
T ss_conf 668
Done!