BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004585
(744 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound
pdb|3RBZ|B Chain B, Mthk Channel, Ca2+-Bound
pdb|3RBZ|C Chain C, Mthk Channel, Ca2+-Bound
pdb|3RBZ|D Chain D, Mthk Channel, Ca2+-Bound
Length = 340
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 70/322 (21%), Positives = 139/322 (43%), Gaps = 37/322 (11%)
Query: 306 LYAVSDSSFAEA----LWLSWTFVA-DSGNHADRVGTGP--RIVSVSISSGGMLIFAMML 358
+Y + F E + L WTFV + + D + P +V++ G+ FA+ +
Sbjct: 32 IYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIATFAVAV 91
Query: 359 GLVSDAISEKVDSLRKGKSEVIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAE 418
+ + + G +V + H++I GWS+ L++L G + VLAE
Sbjct: 92 ARLLTFLINREQMKLIGLIDVAKSRHVVICGWSESTLECLRELR-------GSEVFVLAE 144
Query: 419 RDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARAIIVLASDENADQSDA 478
E + + + +F+ G P ++DL+K +V ARA+IV +SD+
Sbjct: 145 --DENVRKKVLRSGANFV-------HGDPTRVSDLEKANVRGARAVIV------DLESDS 189
Query: 479 RALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQ 538
+ +L + + E +R ++ E +N +++ G + + + + GRLM +
Sbjct: 190 ETIHCILGIRKIDESVR--IIAEAERYENIEQLRMAGAD--QVISPFVISGRLMSRSIDD 245
Query: 539 PGLAQIWEDILGFENAEFYIKRWPQLDDLRFEEVVI---SFPDAIPCGIKVAAEGGKIIL 595
A +D+L E+ ++ P + + E V + D I G ++I+
Sbjct: 246 GYEAMFVQDVLAEESTRRMVE-VPIPEGSKLEGVSVLDADIHDVTGVIIIGVGRGDELII 304
Query: 596 NPDDNYVLKEGDEVLVIAEDDD 617
+P +Y + GD +L I + ++
Sbjct: 305 DPPRDYSFRAGDIILGIGKPEE 326
>pdb|3RBX|A Chain A, Mthk Rck Domain D184n Mutant, Ca2+-Bound
pdb|3RBX|B Chain B, Mthk Rck Domain D184n Mutant, Ca2+-Bound
pdb|3RBX|C Chain C, Mthk Rck Domain D184n Mutant, Ca2+-Bound
pdb|3RBX|D Chain D, Mthk Rck Domain D184n Mutant, Ca2+-Bound
pdb|3RBX|E Chain E, Mthk Rck Domain D184n Mutant, Ca2+-Bound
pdb|3RBX|F Chain F, Mthk Rck Domain D184n Mutant, Ca2+-Bound
Length = 234
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 108/243 (44%), Gaps = 30/243 (12%)
Query: 375 GKSEVIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFD 434
G +V + H++I GWS+ L++L G + VLAE E + + + +
Sbjct: 2 GLIDVAKSRHVVICGWSESTLECLRELR-------GSEVFVLAE--DENVRKKVLRSGAN 52
Query: 435 FMGTSVICRSGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGL 494
F+ G P ++DL+K +V ARA+IV +SD+ + +L + + E +
Sbjct: 53 FV-------HGDPTRVSDLEKANVRGARAVIVNL------ESDSETIHCILGIRKIDESV 99
Query: 495 RGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGFENA 554
R ++ E +N +++ G + + + + GRLM + A +D+L E+
Sbjct: 100 R--IIAEAERYENIEQLRMAGAD--QVISPFVISGRLMSRSIDDGYEAMFVQDVLAEEST 155
Query: 555 EFYIKRWPQLDDLRFEEVVI---SFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLV 611
++ P + + E V + D I G ++I++P +Y + GD +L
Sbjct: 156 RRMVE-VPIPEGSKLEGVSVLDADIHDVTGVIIIGVGRGDELIIDPPRDYSFRAGDIILG 214
Query: 612 IAE 614
I +
Sbjct: 215 IGK 217
>pdb|2FY8|A Chain A, Crystal Structure Of Mthk Rck Domain In Its Ligand-Free
Gating-Ring Form
pdb|2FY8|B Chain B, Crystal Structure Of Mthk Rck Domain In Its Ligand-Free
Gating-Ring Form
pdb|2FY8|C Chain C, Crystal Structure Of Mthk Rck Domain In Its Ligand-Free
Gating-Ring Form
pdb|2FY8|D Chain D, Crystal Structure Of Mthk Rck Domain In Its Ligand-Free
Gating-Ring Form
pdb|2FY8|E Chain E, Crystal Structure Of Mthk Rck Domain In Its Ligand-Free
Gating-Ring Form
pdb|2FY8|F Chain F, Crystal Structure Of Mthk Rck Domain In Its Ligand-Free
Gating-Ring Form
pdb|2FY8|G Chain G, Crystal Structure Of Mthk Rck Domain In Its Ligand-Free
Gating-Ring Form
pdb|2FY8|H Chain H, Crystal Structure Of Mthk Rck Domain In Its Ligand-Free
Gating-Ring Form
Length = 230
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 108/243 (44%), Gaps = 30/243 (12%)
Query: 375 GKSEVIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFD 434
G +V + H++I GWS+ L++L G + VLAE E + + + +
Sbjct: 2 GLIDVAKSRHVVICGWSESTLECLRELR-------GSEVFVLAE--DENVRKKVLRSGAN 52
Query: 435 FMGTSVICRSGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGL 494
F+ G P ++DL+K +V ARA+IV +SD+ + +L + + E +
Sbjct: 53 FV-------HGDPTRVSDLEKANVRGARAVIVNL------ESDSETIHCILGIRKIDESV 99
Query: 495 RGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGFENA 554
R ++ E +N +++ G + + + + GRLM + A +D+L E+
Sbjct: 100 R--IIAEAERYENIEQLRMAGAD--QVISPFVISGRLMSRSIDDGYEAMFVQDVLAEEST 155
Query: 555 EFYIKRWPQLDDLRFEEVVI---SFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLV 611
++ P + + E V + D I G ++I++P +Y + GD +L
Sbjct: 156 RRMVE-VPIPEGSKLEGVSVLDADIHDVTGVIIIGVGRGDELIIDPPRDYSFRAGDIILG 214
Query: 612 IAE 614
I +
Sbjct: 215 IGK 217
>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|B Chain B, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|C Chain C, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|D Chain D, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|E Chain E, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|F Chain F, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|G Chain G, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|H Chain H, Crystal Structure Of Mthk At 3.3 A
Length = 336
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/322 (21%), Positives = 140/322 (43%), Gaps = 37/322 (11%)
Query: 306 LYAVSDSSFAEA----LWLSWTFVA-DSGNHADRVGTGP--RIVSVSISSGGMLIFAMML 358
+Y + F E + L WTFV + + D + P +V++ G+ FA+ +
Sbjct: 32 IYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAV 91
Query: 359 GLVSDAISEKVDSLRKGKSEVIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAE 418
+ + + + G +V + H++I GWS+ L++L G + VLAE
Sbjct: 92 ERLLEFLINREQMKLMGLIDVAKSRHVVICGWSESTLECLRELR-------GSEVFVLAE 144
Query: 419 RDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARAIIVLASDENADQSDA 478
E + + + +F+ G P ++DL+K +V ARA+IV +SD+
Sbjct: 145 --DENVRKKVLRSGANFV-------HGDPTRVSDLEKANVRGARAVIV------DLESDS 189
Query: 479 RALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQ 538
+ +L + + E +R ++ E +N +++ G + + + + GRLM +
Sbjct: 190 ETIHCILGIRKIDESVR--IIAEAERYENIEQLRMAGAD--QVISPFVISGRLMSRSIDD 245
Query: 539 PGLAQIWEDILGFENAEFYIKRWPQLDDLRFEEVVI---SFPDAIPCGIKVAAEGGKIIL 595
A +D+L E+ ++ P + + E V + D I G ++I+
Sbjct: 246 GYEAMFVQDVLAEESTRRMVE-VPIPEGSKLEGVSVLDADIHDVTGVIIIGVGRGDELII 304
Query: 596 NPDDNYVLKEGDEVLVIAEDDD 617
+P +Y + GD +L I + ++
Sbjct: 305 DPPRDYSFRAGDIILGIGKPEE 326
>pdb|4EI2|A Chain A, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|B Chain B, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|C Chain C, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|D Chain D, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|E Chain E, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|F Chain F, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|G Chain G, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|H Chain H, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|I Chain I, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|J Chain J, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|K Chain K, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|L Chain L, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|M Chain M, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|N Chain N, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|O Chain O, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|P Chain P, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
Length = 242
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 108/243 (44%), Gaps = 30/243 (12%)
Query: 375 GKSEVIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFD 434
G +V + H++I GWS+ L++L G + VLAE E + + + +
Sbjct: 2 GLIDVAKSRHVVICGWSESTLECLRELR-------GSEVFVLAE--DENVRKKVLRSGAN 52
Query: 435 FMGTSVICRSGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGL 494
F+ G P ++DL+K +V ARA+IV +SD+ + +L + + E +
Sbjct: 53 FV-------HGDPTRVSDLEKANVRGARAVIVDL------ESDSETIHCILGIRKIDESV 99
Query: 495 RGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGFENA 554
R ++ E +N +++ G + + + + GRLM + A +D+L E+
Sbjct: 100 R--IIAEAERYENIEQLRMAGAD--QVISPFVISGRLMSRSIDDGYEAMFVQDVLAEEST 155
Query: 555 EFYIKRWPQLDDLRFEEVVI---SFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLV 611
++ P + + E V + D I G ++I++P +Y + GD +L
Sbjct: 156 RRMVE-VPIPEGSKLEGVSVLDADIHDVTGVIIIGVGRGDELIIDPPRDYSFRAGDIILG 214
Query: 612 IAE 614
I +
Sbjct: 215 IGK 217
>pdb|2AEF|A Chain A, Crystal Structures Of The Mthk Rck Domain In Ca2+ Bound
Form
pdb|2AEF|B Chain B, Crystal Structures Of The Mthk Rck Domain In Ca2+ Bound
Form
pdb|2AEJ|A Chain A, Crystal Structures Of The Mthk Rck Domain In No Ca2+ Bound
Form
pdb|2AEJ|B Chain B, Crystal Structures Of The Mthk Rck Domain In No Ca2+ Bound
Form
pdb|2AEM|A Chain A, Crystal Structures Of The Mthk Rck Domain
Length = 234
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 108/243 (44%), Gaps = 30/243 (12%)
Query: 375 GKSEVIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFD 434
G +V + H++I GWS+ L++L G + VLAE E + + + +
Sbjct: 2 GLIDVAKSRHVVICGWSESTLECLRELR-------GSEVFVLAE--DENVRKKVLRSGAN 52
Query: 435 FMGTSVICRSGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGL 494
F+ G P ++DL+K +V ARA+IV +SD+ + +L + + E +
Sbjct: 53 FV-------HGDPTRVSDLEKANVRGARAVIVDL------ESDSETIHCILGIRKIDESV 99
Query: 495 RGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGFENA 554
R ++ E +N +++ G + + + + GRLM + A +D+L E+
Sbjct: 100 R--IIAEAERYENIEQLRMAGAD--QVISPFVISGRLMSRSIDDGYEAMFVQDVLAEEST 155
Query: 555 EFYIKRWPQLDDLRFEEVVI---SFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLV 611
++ P + + E V + D I G ++I++P +Y + GD +L
Sbjct: 156 RRMVE-VPIPEGSKLEGVSVLDADIHDVTGVIIIGVGRGDELIIDPPRDYSFRAGDIILG 214
Query: 612 IAE 614
I +
Sbjct: 215 IGK 217
>pdb|2OGU|A Chain A, Crystal Structure Of The Isolated Mthk Rck Domain
Length = 233
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 108/243 (44%), Gaps = 30/243 (12%)
Query: 375 GKSEVIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFD 434
G +V + H++I GWS+ L++L G + VLAE E + + + +
Sbjct: 5 GLIDVAKSRHVVICGWSESTLECLRELR-------GSEVFVLAE--DENVRKKVLRSGAN 55
Query: 435 FMGTSVICRSGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGL 494
F+ G P ++DL+K +V ARA+IV +SD+ + +L + + E +
Sbjct: 56 FV-------HGDPTRVSDLEKANVRGARAVIVDL------ESDSETIHCILGIRKIDESV 102
Query: 495 RGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGFENA 554
R ++ E +N +++ G + + + + GRLM + A +D+L E+
Sbjct: 103 R--IIAEAERYENIEQLRMAGAD--QVISPFVISGRLMSRSIDDGYEAMFVQDVLAEEST 158
Query: 555 EFYIKRWPQLDDLRFEEVVI---SFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLV 611
++ P + + E V + D I G ++I++P +Y + GD +L
Sbjct: 159 RRMVE-VPIPEGSKLEGVSVLDADIHDVTGVIIIGVGRGDELIIDPPRDYSFRAGDIILG 217
Query: 612 IAE 614
I +
Sbjct: 218 IGK 220
>pdb|3KXD|A Chain A, Crystal Structure Of The Mthk Rck In Complex With Cadmium
pdb|3KXD|B Chain B, Crystal Structure Of The Mthk Rck In Complex With Cadmium
Length = 224
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 104/234 (44%), Gaps = 30/234 (12%)
Query: 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICR 443
H++I GWS+ L++L G + VLAE E + + + +F+
Sbjct: 2 HVVICGWSESTLECLRELR-------GSEVFVLAE--DENVRKKVLRSGANFV------- 45
Query: 444 SGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMS 503
G P ++DL+K +V ARA+IV +SD+ + +L + + E +R ++ E
Sbjct: 46 HGDPTRVSDLEKANVRGARAVIVDL------ESDSETIHCILGIRKIDESVR--IIAEAE 97
Query: 504 DLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGFENAEFYIKRWPQ 563
+N +++ G + + + + GRLM + A +D+L E+ ++ P
Sbjct: 98 RYENIEQLRMAGAD--QVISPFVISGRLMSRSIDDGYEAMFVQDVLAEESTRRMVE-VPI 154
Query: 564 LDDLRFEEVVI---SFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAE 614
+ + E V + D I G ++I++P +Y + GD +L I +
Sbjct: 155 PEGSKLEGVSVLDADIHDVTGVIIIGVGRGDELIIDPPRDYSFRAGDIILGIGK 208
>pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c
pdb|3EH2|B Chain B, Crystal Structure Of The Human Copii-Coat Protein Sec24c
pdb|3EH2|C Chain C, Crystal Structure Of The Human Copii-Coat Protein Sec24c
Length = 766
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 341 IVSVSISSGGMLIFAMMLGLVSDAISEKVDSLRKGKSEVIEKNHILILGWSDKLGSLLKQ 400
+ S S + G+ + ++ +S + +DSLR +S ++ + ++ DK+ L K
Sbjct: 680 VSSFSQITSGLSVLPVLDNPLSKKVRGLIDSLRAQRSRYMK---LTVVKQEDKMEMLFKH 736
Query: 401 LAVANKSIGGGVIVV 415
V +KS+ GG V
Sbjct: 737 FLVEDKSLSGGASYV 751
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 30/70 (42%)
Query: 338 GPRIVSVSISSGGMLIFAMMLGLVSDAISEKVDSLRKGKSEVIEKNHILILGWSDKLGSL 397
G V S S+G L A + A+ + + +L G + +NH L + SD LG
Sbjct: 244 GSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQHIPYRNHKLTMLMSDSLGGN 303
Query: 398 LKQLAVANKS 407
K L N S
Sbjct: 304 AKTLMFVNVS 313
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 30/70 (42%)
Query: 338 GPRIVSVSISSGGMLIFAMMLGLVSDAISEKVDSLRKGKSEVIEKNHILILGWSDKLGSL 397
G V S S+G L A + A+ + + +L G + +NH L + SD LG
Sbjct: 236 GSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGN 295
Query: 398 LKQLAVANKS 407
K L N S
Sbjct: 296 AKTLMFVNIS 305
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,798,578
Number of Sequences: 62578
Number of extensions: 841269
Number of successful extensions: 1855
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1844
Number of HSP's gapped (non-prelim): 13
length of query: 744
length of database: 14,973,337
effective HSP length: 106
effective length of query: 638
effective length of database: 8,340,069
effective search space: 5320964022
effective search space used: 5320964022
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)