Query 004585
Match_columns 744
No_of_seqs 414 out of 2518
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 01:48:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004585.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004585hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10537 voltage-gated potassi 100.0 6.1E-30 1.3E-34 283.1 26.6 233 291-549 140-382 (393)
2 PRK09496 trkA potassium transp 100.0 7.2E-30 1.6E-34 288.3 27.5 305 383-739 1-317 (453)
3 PF06241 DUF1012: Protein of u 99.9 3E-26 6.5E-31 220.2 16.4 201 461-670 1-201 (206)
4 KOG1420 Ca2+-activated K+ chan 99.9 6.4E-26 1.4E-30 247.1 9.8 340 266-618 230-621 (1103)
5 COG0569 TrkA K+ transport syst 99.9 2.9E-23 6.3E-28 214.5 18.1 213 383-622 1-217 (225)
6 PRK09496 trkA potassium transp 99.9 1.3E-20 2.9E-25 212.9 22.9 212 381-621 230-444 (453)
7 KOG3193 K+ channel subunit [In 99.8 4.9E-20 1.1E-24 200.6 16.0 319 285-616 184-546 (1087)
8 PRK10669 putative cation:proto 99.7 1.3E-16 2.9E-21 185.6 22.7 141 381-545 416-556 (558)
9 PRK03659 glutathione-regulated 99.7 2.8E-15 6E-20 175.8 23.1 132 381-537 399-531 (601)
10 PRK03562 glutathione-regulated 99.6 1.3E-14 2.9E-19 170.5 23.3 132 381-537 399-531 (621)
11 PF02254 TrkA_N: TrkA-N domain 99.6 1.8E-15 3.9E-20 139.5 12.5 113 385-519 1-113 (116)
12 PF07885 Ion_trans_2: Ion chan 99.1 1.8E-10 3.9E-15 99.7 8.3 72 295-366 3-78 (79)
13 KOG3713 Voltage-gated K+ chann 98.9 7.2E-10 1.6E-14 122.9 5.0 80 289-368 347-433 (477)
14 PF02254 TrkA_N: TrkA-N domain 98.9 5.6E-09 1.2E-13 96.2 7.7 80 645-739 1-82 (116)
15 COG1226 Kch Kef-type K+ transp 98.8 5.5E-08 1.2E-12 96.2 14.9 142 379-544 18-160 (212)
16 COG0569 TrkA K+ transport syst 98.8 2.5E-08 5.5E-13 103.4 9.1 83 643-739 1-86 (225)
17 KOG1419 Voltage-gated K+ chann 98.7 2.9E-08 6.2E-13 110.8 6.4 109 256-369 206-326 (654)
18 KOG1545 Voltage-gated shaker-l 98.5 1E-08 2.2E-13 109.1 -1.8 78 289-366 363-447 (507)
19 PLN03192 Voltage-dependent pot 98.5 4.3E-07 9.3E-12 111.0 10.3 51 317-367 254-305 (823)
20 PRK03562 glutathione-regulated 98.4 3.8E-07 8.3E-12 107.9 8.8 83 642-739 400-484 (621)
21 PRK10537 voltage-gated potassi 98.4 5.8E-07 1.3E-11 100.5 8.4 81 642-739 240-322 (393)
22 PRK03659 glutathione-regulated 98.4 5.4E-07 1.2E-11 106.3 7.9 82 642-738 400-483 (601)
23 PRK10669 putative cation:proto 98.3 2.1E-06 4.6E-11 100.5 9.3 78 641-733 416-495 (558)
24 KOG4404 Tandem pore domain K+ 98.2 5.1E-06 1.1E-10 88.2 10.1 81 287-367 160-249 (350)
25 COG0490 Putative regulatory, l 98.2 3E-06 6.6E-11 82.2 7.3 65 554-621 88-153 (162)
26 COG3400 Uncharacterized protei 98.0 8.5E-05 1.8E-09 79.7 13.8 209 383-619 2-213 (471)
27 PF02080 TrkA_C: TrkA-C domain 97.9 8E-06 1.7E-10 68.7 3.6 62 555-620 3-65 (71)
28 KOG4390 Voltage-gated A-type K 97.9 1.2E-06 2.7E-11 94.0 -2.2 94 271-368 312-412 (632)
29 PF01007 IRK: Inward rectifier 97.8 7E-05 1.5E-09 82.2 9.3 104 283-390 32-160 (336)
30 KOG3684 Ca2+-activated K+ chan 97.7 0.0022 4.9E-08 71.3 18.7 76 290-365 256-340 (489)
31 PRK06719 precorrin-2 dehydroge 97.6 9.7E-05 2.1E-09 72.6 5.3 76 641-738 12-89 (157)
32 KOG1418 Tandem pore domain K+ 97.5 0.00013 2.8E-09 81.1 5.6 63 311-373 113-176 (433)
33 KOG0498 K+-channel ERG and rel 97.4 0.00021 4.6E-09 84.8 5.8 55 314-368 295-350 (727)
34 KOG1418 Tandem pore domain K+ 97.3 4.6E-05 1E-09 84.7 -0.9 66 293-358 222-296 (433)
35 KOG4404 Tandem pore domain K+ 97.3 0.00023 5.1E-09 75.8 4.0 123 223-367 6-135 (350)
36 PF03493 BK_channel_a: Calcium 97.2 0.00098 2.1E-08 60.7 6.8 70 514-585 8-101 (101)
37 KOG0501 K+-channel KCNQ [Inorg 97.1 0.0016 3.4E-08 73.9 9.0 55 314-368 424-479 (971)
38 COG3273 Uncharacterized conser 96.9 0.0013 2.8E-08 65.2 4.9 63 556-621 123-186 (204)
39 PRK06719 precorrin-2 dehydroge 96.8 0.0046 1E-07 60.8 8.7 83 381-490 12-94 (157)
40 PRK06718 precorrin-2 dehydroge 96.6 0.0041 8.9E-08 63.7 6.7 77 641-736 9-87 (202)
41 KOG0499 Cyclic nucleotide-gate 96.4 0.0065 1.4E-07 69.4 7.1 96 272-367 347-457 (815)
42 KOG1420 Ca2+-activated K+ chan 96.4 0.047 1E-06 62.1 13.6 231 381-616 732-1066(1103)
43 TIGR01470 cysG_Nterm siroheme 96.1 0.024 5.3E-07 58.2 8.9 74 642-734 9-84 (205)
44 COG1226 Kch Kef-type K+ transp 95.8 0.031 6.7E-07 55.0 8.1 84 640-738 19-104 (212)
45 KOG0500 Cyclic nucleotide-gate 95.7 0.031 6.7E-07 63.1 8.2 55 314-368 184-238 (536)
46 PRK06718 precorrin-2 dehydroge 95.4 0.057 1.2E-06 55.3 8.4 84 381-489 9-93 (202)
47 PRK05326 potassium/proton anti 94.6 0.044 9.5E-07 64.6 5.4 62 555-621 418-479 (562)
48 KOG3193 K+ channel subunit [In 94.3 0.15 3.2E-06 57.9 8.3 112 438-551 762-904 (1087)
49 PF00670 AdoHcyase_NAD: S-aden 94.1 0.067 1.5E-06 52.9 4.8 72 641-736 22-93 (162)
50 TIGR03802 Asp_Ala_antiprt aspa 94.0 0.079 1.7E-06 62.5 6.0 64 554-621 220-284 (562)
51 PF13460 NAD_binding_10: NADH( 93.9 0.26 5.6E-06 48.5 8.7 69 385-470 1-70 (183)
52 KOG3827 Inward rectifier K+ ch 93.8 0.11 2.4E-06 57.2 6.1 117 270-390 45-188 (400)
53 TIGR01470 cysG_Nterm siroheme 93.6 0.75 1.6E-05 47.2 11.6 84 382-490 9-93 (205)
54 PF03435 Saccharop_dh: Sacchar 93.6 0.33 7.2E-06 54.3 9.8 76 385-470 1-77 (386)
55 PF00520 Ion_trans: Ion transp 93.6 0.3 6.6E-06 47.8 8.5 50 312-361 144-200 (200)
56 PRK04972 putative transporter; 93.3 0.072 1.6E-06 62.7 4.1 63 555-621 305-367 (558)
57 COG1748 LYS9 Saccharopine dehy 93.1 0.49 1.1E-05 53.2 9.8 130 383-547 2-135 (389)
58 PF13460 NAD_binding_10: NADH( 93.0 0.27 5.9E-06 48.3 7.1 67 645-729 1-68 (183)
59 PRK05562 precorrin-2 dehydroge 93.0 0.43 9.3E-06 49.7 8.7 75 641-734 24-100 (223)
60 TIGR03802 Asp_Ala_antiprt aspa 92.8 0.13 2.8E-06 60.8 5.2 63 555-621 305-372 (562)
61 COG1748 LYS9 Saccharopine dehy 92.7 0.28 6.1E-06 55.0 7.3 82 643-737 2-87 (389)
62 PRK03818 putative transporter; 92.6 0.14 3.1E-06 60.3 5.1 62 555-620 292-354 (552)
63 PF05368 NmrA: NmrA-like famil 92.2 0.4 8.7E-06 49.3 7.3 72 645-730 1-73 (233)
64 PLN02819 lysine-ketoglutarate 91.9 0.4 8.7E-06 60.1 8.1 81 640-733 567-661 (1042)
65 PRK12475 thiamine/molybdopteri 91.8 1.6 3.6E-05 48.3 12.0 98 381-491 23-141 (338)
66 PRK12475 thiamine/molybdopteri 91.7 0.68 1.5E-05 51.2 8.8 85 641-732 23-127 (338)
67 PRK03818 putative transporter; 91.7 0.25 5.4E-06 58.2 5.7 63 554-621 207-270 (552)
68 CHL00194 ycf39 Ycf39; Provisio 91.4 1.3 2.9E-05 47.9 10.7 72 383-469 1-73 (317)
69 cd01078 NAD_bind_H4MPT_DH NADP 91.2 0.54 1.2E-05 47.4 6.8 78 641-729 27-105 (194)
70 PF03435 Saccharop_dh: Sacchar 91.1 0.49 1.1E-05 52.9 7.1 74 645-729 1-75 (386)
71 COG0168 TrkG Trk-type K+ trans 91.1 3.8 8.3E-05 47.8 14.5 73 289-361 400-482 (499)
72 PF01488 Shikimate_DH: Shikima 90.8 0.3 6.6E-06 46.6 4.4 72 641-729 11-83 (135)
73 COG3263 NhaP-type Na+/H+ and K 90.6 0.35 7.5E-06 54.4 5.0 54 561-620 422-476 (574)
74 PF13241 NAD_binding_7: Putati 90.2 0.49 1.1E-05 43.0 5.0 63 641-729 6-68 (103)
75 PF01210 NAD_Gly3P_dh_N: NAD-d 90.2 0.44 9.5E-06 46.6 5.0 77 644-729 1-77 (157)
76 cd01075 NAD_bind_Leu_Phe_Val_D 89.9 1.1 2.3E-05 45.9 7.8 101 383-517 29-134 (200)
77 PRK05562 precorrin-2 dehydroge 89.9 4.1 8.9E-05 42.5 12.0 85 382-490 25-109 (223)
78 COG0373 HemA Glutamyl-tRNA red 89.8 0.66 1.4E-05 52.5 6.6 69 641-729 177-246 (414)
79 PF05368 NmrA: NmrA-like famil 89.5 2.6 5.7E-05 43.3 10.4 71 385-470 1-74 (233)
80 CHL00194 ycf39 Ycf39; Provisio 89.4 1 2.2E-05 48.8 7.6 70 644-729 2-72 (317)
81 PRK04972 putative transporter; 89.1 0.63 1.4E-05 55.0 6.1 54 564-621 228-282 (558)
82 PLN02819 lysine-ketoglutarate 89.1 2.2 4.7E-05 53.8 10.9 104 381-502 568-679 (1042)
83 COG1648 CysG Siroheme synthase 88.9 1 2.2E-05 46.5 6.7 74 641-733 11-86 (210)
84 PLN03209 translocon at the inn 88.8 1.3 2.9E-05 52.2 8.3 84 640-729 78-167 (576)
85 PRK00536 speE spermidine synth 88.6 1.3 2.7E-05 47.4 7.3 74 640-728 71-146 (262)
86 PRK01581 speE spermidine synth 88.5 1.9 4.2E-05 48.1 8.9 82 640-729 149-234 (374)
87 PF00670 AdoHcyase_NAD: S-aden 88.4 0.97 2.1E-05 44.8 5.9 66 382-470 23-88 (162)
88 PRK07688 thiamine/molybdopteri 88.2 1.5 3.2E-05 48.6 7.9 84 641-732 23-127 (339)
89 cd05213 NAD_bind_Glutamyl_tRNA 88.1 0.99 2.1E-05 49.3 6.4 78 641-737 177-257 (311)
90 PRK10637 cysG siroheme synthas 87.7 1.9 4.2E-05 49.6 8.8 75 641-734 11-87 (457)
91 PRK06914 short chain dehydroge 87.4 2.3 5E-05 44.8 8.5 82 383-470 4-91 (280)
92 PRK08267 short chain dehydroge 87.3 1.2 2.6E-05 46.3 6.3 76 643-729 2-85 (260)
93 cd05211 NAD_bind_Glu_Leu_Phe_V 87.3 1.5 3.3E-05 45.4 6.9 107 381-515 22-143 (217)
94 cd01078 NAD_bind_H4MPT_DH NADP 87.2 2.4 5.3E-05 42.6 8.2 79 382-470 28-107 (194)
95 PRK09186 flagellin modificatio 87.2 2.2 4.7E-05 44.1 8.1 81 382-468 4-91 (256)
96 PLN00141 Tic62-NAD(P)-related 87.1 2 4.4E-05 44.7 7.8 77 382-470 17-95 (251)
97 PF02558 ApbA: Ketopantoate re 86.8 0.99 2.1E-05 43.2 4.9 82 645-737 1-86 (151)
98 PLN02366 spermidine synthase 86.7 2 4.4E-05 46.9 7.8 82 640-729 90-173 (308)
99 PRK07326 short chain dehydroge 86.2 3 6.4E-05 42.5 8.4 79 382-469 6-91 (237)
100 PLN02780 ketoreductase/ oxidor 86.2 7.5 0.00016 42.4 11.9 62 382-449 53-115 (320)
101 COG0300 DltE Short-chain dehyd 86.1 2.5 5.4E-05 45.2 7.8 70 381-457 5-75 (265)
102 PF00070 Pyr_redox: Pyridine n 86.1 1.3 2.8E-05 37.9 4.8 32 644-678 1-32 (80)
103 TIGR01181 dTDP_gluc_dehyt dTDP 86.1 1.8 3.9E-05 45.9 6.9 78 644-729 1-81 (317)
104 PRK04148 hypothetical protein; 86.1 1.7 3.6E-05 41.8 5.8 70 383-470 18-87 (134)
105 PF00056 Ldh_1_N: lactate/mala 86.0 10 0.00022 36.5 11.4 76 383-470 1-79 (141)
106 PRK14106 murD UDP-N-acetylmura 85.9 1.6 3.4E-05 49.9 6.7 69 642-729 5-76 (450)
107 TIGR03589 PseB UDP-N-acetylglu 85.8 2.4 5.2E-05 46.2 7.8 77 643-729 5-82 (324)
108 PRK07074 short chain dehydroge 85.8 1.9 4E-05 44.8 6.7 76 643-729 3-85 (257)
109 TIGR00518 alaDH alanine dehydr 85.6 2.1 4.5E-05 48.0 7.3 72 642-729 167-238 (370)
110 TIGR00933 2a38 potassium uptak 85.0 6.7 0.00014 44.2 11.1 41 310-350 345-389 (390)
111 COG1648 CysG Siroheme synthase 85.0 4.3 9.4E-05 42.0 8.8 86 382-491 12-97 (210)
112 PRK08251 short chain dehydroge 84.9 3.3 7.2E-05 42.5 8.1 81 383-469 3-90 (248)
113 PF01488 Shikimate_DH: Shikima 84.9 2.4 5.2E-05 40.4 6.4 75 381-470 11-85 (135)
114 PRK08265 short chain dehydroge 84.9 3.1 6.6E-05 43.5 7.8 77 382-469 6-89 (261)
115 PRK07688 thiamine/molybdopteri 84.8 9.7 0.00021 42.2 12.0 97 381-491 23-141 (339)
116 cd05213 NAD_bind_Glutamyl_tRNA 84.5 4.4 9.6E-05 44.2 9.1 103 381-509 177-279 (311)
117 PLN02823 spermine synthase 84.4 3.9 8.5E-05 45.3 8.6 81 641-729 103-184 (336)
118 TIGR03466 HpnA hopanoid-associ 84.3 2.3 4.9E-05 45.6 6.7 70 644-729 2-72 (328)
119 PLN02214 cinnamoyl-CoA reducta 84.2 3.3 7.1E-05 45.5 8.0 79 642-729 10-89 (342)
120 PLN00141 Tic62-NAD(P)-related 84.2 3.6 7.8E-05 42.9 8.0 74 642-729 17-93 (251)
121 PF13241 NAD_binding_7: Putati 84.1 5.3 0.00011 36.2 8.0 79 382-491 7-85 (103)
122 PRK06522 2-dehydropantoate 2-r 84.1 7.8 0.00017 41.4 10.7 40 383-428 1-40 (304)
123 PRK06194 hypothetical protein; 84.0 3.4 7.5E-05 43.6 7.9 80 383-470 7-93 (287)
124 PLN03209 translocon at the inn 84.0 3.7 8E-05 48.5 8.6 83 381-470 79-169 (576)
125 COG4262 Predicted spermidine s 83.9 4.5 9.7E-05 44.9 8.5 82 639-729 287-373 (508)
126 PRK08267 short chain dehydroge 83.8 3.7 8.1E-05 42.6 7.9 78 383-470 2-87 (260)
127 PLN00198 anthocyanidin reducta 83.8 4.1 8.8E-05 44.4 8.5 78 642-729 9-88 (338)
128 PRK09291 short chain dehydroge 83.5 5.7 0.00012 41.0 9.1 79 383-469 3-82 (257)
129 PRK07831 short chain dehydroge 83.4 4.1 8.8E-05 42.5 8.0 82 382-469 17-106 (262)
130 cd01065 NAD_bind_Shikimate_DH 83.2 2.7 5.8E-05 40.2 6.1 72 641-729 18-89 (155)
131 PRK06949 short chain dehydroge 83.2 5.2 0.00011 41.3 8.7 81 381-469 8-95 (258)
132 PRK06101 short chain dehydroge 83.0 3.6 7.8E-05 42.4 7.3 62 383-456 2-64 (240)
133 PRK10538 malonic semialdehyde 82.8 4.4 9.5E-05 41.9 7.9 76 383-469 1-83 (248)
134 PLN02896 cinnamyl-alcohol dehy 82.8 4.9 0.00011 44.1 8.7 81 380-470 8-89 (353)
135 PRK07231 fabG 3-ketoacyl-(acyl 82.8 4.5 9.7E-05 41.4 7.9 79 383-470 6-91 (251)
136 cd05291 HicDH_like L-2-hydroxy 82.7 2.9 6.4E-05 45.4 6.8 75 384-470 2-78 (306)
137 PRK12829 short chain dehydroge 82.6 5.1 0.00011 41.5 8.4 79 381-469 10-95 (264)
138 PLN02583 cinnamoyl-CoA reducta 82.5 4.5 9.9E-05 43.4 8.1 78 642-728 6-85 (297)
139 PRK07024 short chain dehydroge 82.4 4.4 9.5E-05 42.1 7.8 78 383-469 3-87 (257)
140 PLN02427 UDP-apiose/xylose syn 82.2 5.6 0.00012 44.3 9.0 82 640-729 12-94 (386)
141 PRK05854 short chain dehydroge 82.1 4.8 0.0001 43.6 8.2 82 382-469 14-102 (313)
142 PRK06138 short chain dehydroge 82.0 5.3 0.00011 41.0 8.1 79 383-470 6-91 (252)
143 PRK06194 hypothetical protein; 81.8 2.5 5.5E-05 44.6 5.8 78 643-729 7-91 (287)
144 TIGR03466 HpnA hopanoid-associ 81.8 3 6.5E-05 44.6 6.4 71 384-469 2-73 (328)
145 TIGR01472 gmd GDP-mannose 4,6- 81.7 3.5 7.6E-05 45.0 7.0 80 643-729 1-86 (343)
146 PLN02650 dihydroflavonol-4-red 81.7 4.6 9.9E-05 44.3 7.9 82 382-470 5-87 (351)
147 PRK03612 spermidine synthase; 81.7 5.7 0.00012 46.6 9.1 82 640-729 296-381 (521)
148 PRK07063 short chain dehydroge 81.6 5.4 0.00012 41.4 8.1 81 383-469 8-95 (260)
149 PRK06940 short chain dehydroge 81.4 4.8 0.0001 42.6 7.7 80 382-470 2-86 (275)
150 PRK12829 short chain dehydroge 81.4 4.1 8.9E-05 42.2 7.1 78 641-729 10-94 (264)
151 PRK06482 short chain dehydroge 81.4 6.9 0.00015 41.1 8.9 77 383-470 3-86 (276)
152 PRK11908 NAD-dependent epimera 81.2 4.3 9.3E-05 44.4 7.5 73 383-468 2-76 (347)
153 PRK07231 fabG 3-ketoacyl-(acyl 81.2 4.9 0.00011 41.1 7.6 77 642-729 5-89 (251)
154 PRK07062 short chain dehydroge 81.2 5.7 0.00012 41.4 8.1 81 383-469 9-96 (265)
155 PF00899 ThiF: ThiF family; I 81.2 3.7 8E-05 38.8 6.1 88 642-734 2-105 (135)
156 PRK07454 short chain dehydroge 81.2 5.8 0.00013 40.6 8.0 79 383-469 7-92 (241)
157 PLN02427 UDP-apiose/xylose syn 81.1 4.3 9.4E-05 45.2 7.6 82 381-469 13-95 (386)
158 TIGR02356 adenyl_thiF thiazole 81.1 5.6 0.00012 40.6 7.8 85 641-732 20-122 (202)
159 TIGR02853 spore_dpaA dipicolin 81.0 3 6.4E-05 45.2 6.0 34 642-678 151-184 (287)
160 PRK05476 S-adenosyl-L-homocyst 80.9 4.8 0.0001 46.0 7.8 72 641-736 211-282 (425)
161 PRK05565 fabG 3-ketoacyl-(acyl 80.9 5.5 0.00012 40.6 7.8 80 383-470 6-93 (247)
162 TIGR03649 ergot_EASG ergot alk 80.8 4.7 0.0001 42.7 7.4 69 385-470 2-77 (285)
163 cd01065 NAD_bind_Shikimate_DH 80.8 5.1 0.00011 38.3 7.0 73 382-470 19-91 (155)
164 PF00106 adh_short: short chai 80.8 5.8 0.00013 38.0 7.5 81 383-470 1-90 (167)
165 TIGR03589 PseB UDP-N-acetylglu 80.7 6.9 0.00015 42.6 8.8 79 383-470 5-84 (324)
166 PRK00045 hemA glutamyl-tRNA re 80.7 2.8 6.1E-05 47.8 6.0 69 641-729 181-250 (423)
167 PRK05993 short chain dehydroge 80.7 4.4 9.5E-05 42.8 7.1 73 383-469 5-85 (277)
168 PRK08017 oxidoreductase; Provi 80.7 4.6 9.9E-05 41.7 7.1 59 383-455 3-62 (256)
169 PRK06200 2,3-dihydroxy-2,3-dih 80.7 5.3 0.00011 41.7 7.6 77 382-469 6-89 (263)
170 PRK08309 short chain dehydroge 80.6 6.2 0.00013 39.6 7.7 65 383-456 1-65 (177)
171 PLN02896 cinnamyl-alcohol dehy 80.6 6.8 0.00015 43.0 8.8 77 641-729 9-87 (353)
172 PRK07067 sorbitol dehydrogenas 80.5 5.9 0.00013 41.0 7.9 76 383-469 7-89 (257)
173 TIGR01035 hemA glutamyl-tRNA r 80.4 2.6 5.7E-05 48.0 5.6 69 641-729 179-248 (417)
174 PLN02989 cinnamyl-alcohol dehy 80.4 5.2 0.00011 43.2 7.7 81 383-470 6-87 (325)
175 PLN02662 cinnamyl-alcohol dehy 80.2 4.7 0.0001 43.2 7.3 78 643-729 5-84 (322)
176 PRK06172 short chain dehydroge 80.2 6.5 0.00014 40.6 8.1 79 383-469 8-93 (253)
177 PRK07523 gluconate 5-dehydroge 80.2 6.1 0.00013 40.9 7.9 81 382-470 10-97 (255)
178 PRK08340 glucose-1-dehydrogena 80.2 5.7 0.00012 41.4 7.7 78 383-469 1-85 (259)
179 PF00060 Lig_chan: Ligand-gate 80.1 1.8 3.9E-05 41.0 3.5 55 314-368 45-99 (148)
180 PRK12939 short chain dehydroge 79.9 6.6 0.00014 40.2 7.9 81 382-470 7-94 (250)
181 TIGR01832 kduD 2-deoxy-D-gluco 79.8 8.2 0.00018 39.6 8.7 77 642-729 5-88 (248)
182 PRK13940 glutamyl-tRNA reducta 79.8 4.1 8.9E-05 46.4 6.9 69 642-729 181-250 (414)
183 PRK07666 fabG 3-ketoacyl-(acyl 79.8 6.8 0.00015 40.1 8.0 80 382-469 7-93 (239)
184 TIGR00936 ahcY adenosylhomocys 79.7 3.1 6.8E-05 47.2 5.8 73 641-737 194-266 (406)
185 PF01210 NAD_Gly3P_dh_N: NAD-d 79.5 2.5 5.4E-05 41.3 4.4 76 384-469 1-78 (157)
186 PRK15181 Vi polysaccharide bio 79.4 5.6 0.00012 43.7 7.7 82 641-729 14-98 (348)
187 PRK01438 murD UDP-N-acetylmura 79.4 4 8.7E-05 47.1 6.8 34 641-677 15-48 (480)
188 PRK06182 short chain dehydroge 79.4 5.4 0.00012 41.9 7.3 74 383-470 4-84 (273)
189 PRK08643 acetoin reductase; Va 79.4 6.9 0.00015 40.5 8.0 79 383-469 3-88 (256)
190 PLN02650 dihydroflavonol-4-red 79.3 6.4 0.00014 43.1 8.1 78 642-729 5-85 (351)
191 PLN02989 cinnamyl-alcohol dehy 79.2 7.7 0.00017 41.8 8.6 79 642-729 5-85 (325)
192 PF01408 GFO_IDH_MocA: Oxidore 79.2 20 0.00043 32.6 10.1 71 384-470 2-72 (120)
193 PLN00203 glutamyl-tRNA reducta 79.1 4.1 8.9E-05 47.7 6.7 71 642-729 266-337 (519)
194 PRK08306 dipicolinate synthase 79.1 4.2 9.2E-05 44.1 6.4 34 642-678 152-185 (296)
195 PRK06500 short chain dehydroge 79.0 7.6 0.00017 39.7 8.1 77 382-469 6-89 (249)
196 PLN02214 cinnamoyl-CoA reducta 79.0 16 0.00035 40.1 11.1 80 382-470 10-91 (342)
197 PRK07074 short chain dehydroge 79.0 8 0.00017 40.0 8.3 77 384-470 4-87 (257)
198 PLN02662 cinnamyl-alcohol dehy 78.9 5.2 0.00011 42.9 7.1 81 383-470 5-86 (322)
199 PF03807 F420_oxidored: NADP o 78.8 23 0.00051 30.9 10.1 80 384-485 1-81 (96)
200 PRK07097 gluconate 5-dehydroge 78.7 7.5 0.00016 40.6 8.0 80 383-470 11-97 (265)
201 PLN03223 Polycystin cation cha 78.6 35 0.00075 43.9 14.4 55 312-368 1360-1425(1634)
202 cd01483 E1_enzyme_family Super 78.6 5.9 0.00013 37.8 6.6 83 644-733 1-101 (143)
203 PF02386 TrkH: Cation transpor 78.6 6.6 0.00014 43.6 7.9 68 289-356 269-345 (354)
204 PRK07326 short chain dehydroge 78.4 5 0.00011 40.8 6.5 77 642-729 6-90 (237)
205 PRK06522 2-dehydropantoate 2-r 78.4 7.3 0.00016 41.6 8.0 43 644-691 2-44 (304)
206 PRK06124 gluconate 5-dehydroge 78.2 8 0.00017 40.0 8.0 80 382-469 11-97 (256)
207 PLN02657 3,8-divinyl protochlo 78.1 5 0.00011 45.1 6.9 78 640-728 58-143 (390)
208 PRK12384 sorbitol-6-phosphate 78.1 8 0.00017 40.0 8.0 81 383-469 3-90 (259)
209 PRK09242 tropinone reductase; 78.0 8.2 0.00018 40.0 8.1 81 383-469 10-97 (257)
210 PRK05875 short chain dehydroge 78.0 8.7 0.00019 40.3 8.3 82 382-469 7-95 (276)
211 PTZ00075 Adenosylhomocysteinas 77.9 3.5 7.6E-05 47.6 5.6 35 641-678 253-287 (476)
212 COG0771 MurD UDP-N-acetylmuram 77.9 4.5 9.9E-05 46.4 6.4 71 642-729 7-77 (448)
213 PRK06197 short chain dehydroge 77.9 7 0.00015 41.9 7.7 82 382-469 16-104 (306)
214 TIGR00934 2a38euk potassium up 77.8 12 0.00026 45.7 10.1 61 291-352 587-661 (800)
215 PF01073 3Beta_HSD: 3-beta hyd 77.8 3.7 8.1E-05 44.1 5.5 68 649-729 5-74 (280)
216 TIGR00518 alaDH alanine dehydr 77.8 6.4 0.00014 44.1 7.6 72 382-468 167-238 (370)
217 TIGR02964 xanthine_xdhC xanthi 77.6 8.3 0.00018 40.8 7.9 81 641-739 99-183 (246)
218 KOG1014 17 beta-hydroxysteroid 77.5 24 0.00053 38.5 11.4 43 382-430 49-92 (312)
219 PRK12429 3-hydroxybutyrate deh 77.5 8.8 0.00019 39.5 8.1 80 383-470 5-91 (258)
220 PRK07102 short chain dehydroge 77.4 7.8 0.00017 39.7 7.7 80 383-469 2-85 (243)
221 PLN02986 cinnamyl-alcohol dehy 77.4 8.1 0.00018 41.6 8.1 78 642-729 5-85 (322)
222 PRK07024 short chain dehydroge 77.4 8.2 0.00018 40.1 7.8 76 643-729 3-86 (257)
223 PRK06924 short chain dehydroge 77.4 7.2 0.00016 40.1 7.4 63 383-456 2-66 (251)
224 PRK07890 short chain dehydroge 77.3 8.5 0.00018 39.7 7.9 80 382-469 5-91 (258)
225 PRK12826 3-ketoacyl-(acyl-carr 77.2 8.2 0.00018 39.4 7.7 77 642-729 6-91 (251)
226 PRK05866 short chain dehydroge 77.2 7.7 0.00017 41.6 7.7 81 382-470 40-127 (293)
227 PRK06196 oxidoreductase; Provi 77.1 7.7 0.00017 41.9 7.8 75 383-469 27-108 (315)
228 PRK00811 spermidine synthase; 77.1 6.8 0.00015 42.2 7.3 80 641-728 76-157 (283)
229 PF13478 XdhC_C: XdhC Rossmann 77.1 5.4 0.00012 38.3 5.8 63 645-729 1-63 (136)
230 PRK07576 short chain dehydroge 77.1 8 0.00017 40.5 7.7 79 382-468 9-94 (264)
231 PRK12548 shikimate 5-dehydroge 77.1 8.9 0.00019 41.4 8.2 80 642-729 126-207 (289)
232 PRK13394 3-hydroxybutyrate deh 77.0 8 0.00017 39.9 7.6 80 383-470 8-94 (262)
233 PRK05884 short chain dehydroge 77.0 6.4 0.00014 40.3 6.8 72 384-468 2-77 (223)
234 PRK07806 short chain dehydroge 76.9 8.9 0.00019 39.4 7.9 78 642-729 6-92 (248)
235 PF01564 Spermine_synth: Sperm 76.8 4.9 0.00011 42.5 6.0 91 641-738 76-168 (246)
236 PRK05867 short chain dehydroge 76.8 9.4 0.0002 39.5 8.1 79 383-469 10-95 (253)
237 PRK08339 short chain dehydroge 76.7 9.2 0.0002 40.1 8.1 80 383-469 9-94 (263)
238 PLN02657 3,8-divinyl protochlo 76.7 4.6 0.0001 45.5 6.1 80 382-469 60-145 (390)
239 PRK06181 short chain dehydroge 76.5 8.9 0.00019 39.8 7.8 79 383-469 2-87 (263)
240 PRK12826 3-ketoacyl-(acyl-carr 76.5 9.4 0.0002 39.0 7.9 81 382-470 6-93 (251)
241 PRK08219 short chain dehydroge 76.4 8.9 0.00019 38.6 7.6 75 383-470 4-81 (227)
242 PLN02928 oxidoreductase family 76.4 4.1 8.8E-05 45.3 5.5 33 642-677 159-191 (347)
243 PRK05650 short chain dehydroge 76.0 9.8 0.00021 39.8 8.0 79 384-470 2-87 (270)
244 PRK05866 short chain dehydroge 76.0 5.3 0.00011 42.9 6.1 78 643-729 41-125 (293)
245 PRK07774 short chain dehydroge 76.0 9.6 0.00021 39.1 7.8 80 382-469 6-92 (250)
246 PRK11749 dihydropyrimidine deh 76.0 3.8 8.1E-05 47.0 5.2 35 640-677 138-172 (457)
247 PRK07825 short chain dehydroge 76.0 8.3 0.00018 40.4 7.5 75 383-469 6-87 (273)
248 PRK08594 enoyl-(acyl carrier p 75.9 8.4 0.00018 40.4 7.5 78 642-728 7-94 (257)
249 PRK07109 short chain dehydroge 75.8 9.4 0.0002 41.9 8.1 80 382-469 8-94 (334)
250 PRK10637 cysG siroheme synthas 75.7 22 0.00049 41.0 11.4 86 381-490 11-96 (457)
251 PRK05653 fabG 3-ketoacyl-(acyl 75.7 10 0.00022 38.4 7.9 80 383-470 6-92 (246)
252 PRK08213 gluconate 5-dehydroge 75.6 11 0.00023 39.2 8.1 81 382-470 12-99 (259)
253 PRK08219 short chain dehydroge 75.6 9.1 0.0002 38.5 7.4 73 643-729 4-79 (227)
254 PRK06138 short chain dehydroge 75.5 10 0.00022 38.8 7.9 78 642-729 5-89 (252)
255 PF07991 IlvN: Acetohydroxy ac 75.3 3 6.6E-05 41.4 3.6 67 642-731 4-71 (165)
256 PRK07424 bifunctional sterol d 75.1 24 0.00051 40.2 11.2 75 383-469 179-254 (406)
257 PRK12825 fabG 3-ketoacyl-(acyl 75.0 8.2 0.00018 39.1 7.0 79 643-729 7-92 (249)
258 PRK06180 short chain dehydroge 74.9 9.6 0.00021 40.2 7.7 77 383-470 5-88 (277)
259 PF00899 ThiF: ThiF family; I 74.9 30 0.00066 32.5 10.3 35 382-421 2-36 (135)
260 PRK06139 short chain dehydroge 74.9 9.6 0.00021 41.9 7.9 80 382-469 7-93 (330)
261 PRK06172 short chain dehydroge 74.9 5.7 0.00012 41.0 5.8 79 642-729 7-92 (253)
262 TIGR03325 BphB_TodD cis-2,3-di 74.9 10 0.00022 39.5 7.8 76 383-469 6-88 (262)
263 PRK12828 short chain dehydroge 74.7 9.5 0.00021 38.5 7.3 77 383-469 8-91 (239)
264 PF00106 adh_short: short chai 74.6 6.9 0.00015 37.4 6.0 79 643-729 1-88 (167)
265 TIGR01500 sepiapter_red sepiap 74.5 11 0.00023 39.2 7.8 71 384-456 2-73 (256)
266 cd01076 NAD_bind_1_Glu_DH NAD( 74.5 6.3 0.00014 41.2 6.0 108 381-516 30-153 (227)
267 KOG1201 Hydroxysteroid 17-beta 74.4 29 0.00063 37.7 11.0 66 381-455 37-103 (300)
268 cd05290 LDH_3 A subgroup of L- 74.3 23 0.00049 38.8 10.5 75 384-470 1-78 (307)
269 TIGR00933 2a38 potassium uptak 74.3 26 0.00056 39.5 11.3 36 299-334 114-149 (390)
270 PRK06101 short chain dehydroge 74.3 8.1 0.00018 39.8 6.8 61 643-716 2-63 (240)
271 PRK07454 short chain dehydroge 74.3 6.3 0.00014 40.4 5.9 79 642-729 6-91 (241)
272 PRK13302 putative L-aspartate 74.2 6.4 0.00014 42.2 6.1 70 642-729 6-75 (271)
273 PRK09072 short chain dehydroge 74.2 12 0.00025 39.1 8.0 80 382-470 5-90 (263)
274 PRK07890 short chain dehydroge 74.1 9.9 0.00021 39.2 7.4 77 642-729 5-90 (258)
275 PRK06914 short chain dehydroge 74.0 5.8 0.00013 41.7 5.7 80 643-729 4-89 (280)
276 PRK07478 short chain dehydroge 74.0 12 0.00026 38.6 8.0 79 383-469 7-92 (254)
277 PRK06179 short chain dehydroge 74.0 5.7 0.00012 41.5 5.6 72 383-470 5-83 (270)
278 PRK08217 fabG 3-ketoacyl-(acyl 74.0 12 0.00026 38.3 7.9 80 382-469 5-91 (253)
279 PRK05717 oxidoreductase; Valid 73.9 13 0.00029 38.4 8.4 77 382-469 10-93 (255)
280 PRK10750 potassium transporter 73.9 99 0.0021 36.1 16.1 70 289-359 398-475 (483)
281 PRK08264 short chain dehydroge 73.8 9.9 0.00022 38.7 7.3 74 382-470 6-83 (238)
282 PRK07060 short chain dehydroge 73.8 10 0.00023 38.6 7.4 74 642-729 9-85 (245)
283 PRK12936 3-ketoacyl-(acyl-carr 73.8 18 0.00039 36.8 9.2 78 382-470 6-90 (245)
284 PRK15181 Vi polysaccharide bio 73.7 8.8 0.00019 42.2 7.3 81 383-470 16-100 (348)
285 cd00757 ThiF_MoeB_HesA_family 73.7 8 0.00017 40.2 6.6 80 641-731 20-121 (228)
286 PRK09135 pteridine reductase; 73.7 14 0.0003 37.7 8.3 80 383-469 7-94 (249)
287 TIGR01318 gltD_gamma_fam gluta 73.7 5.1 0.00011 46.3 5.5 36 640-678 139-174 (467)
288 TIGR01181 dTDP_gluc_dehyt dTDP 73.7 7.7 0.00017 41.1 6.6 78 384-470 1-83 (317)
289 PRK04457 spermidine synthase; 73.6 15 0.00033 39.1 8.7 80 640-729 65-144 (262)
290 PRK06182 short chain dehydroge 73.6 8.8 0.00019 40.3 6.9 73 642-729 3-82 (273)
291 PRK07060 short chain dehydroge 73.5 10 0.00022 38.7 7.3 75 383-470 10-87 (245)
292 PRK08265 short chain dehydroge 73.5 11 0.00024 39.4 7.6 76 642-729 6-88 (261)
293 PRK11908 NAD-dependent epimera 73.4 8.8 0.00019 42.0 7.2 72 643-728 2-75 (347)
294 cd01485 E1-1_like Ubiquitin ac 73.4 7.9 0.00017 39.5 6.3 86 641-732 18-124 (198)
295 PRK07814 short chain dehydroge 73.4 13 0.00028 38.8 8.1 80 382-469 10-96 (263)
296 PRK10675 UDP-galactose-4-epime 73.3 12 0.00025 40.6 8.0 76 644-729 2-81 (338)
297 COG1087 GalE UDP-glucose 4-epi 73.3 7.3 0.00016 42.4 6.1 72 644-729 2-75 (329)
298 TIGR02415 23BDH acetoin reduct 73.3 13 0.00027 38.3 7.9 78 384-469 2-86 (254)
299 cd01487 E1_ThiF_like E1_ThiF_l 73.2 12 0.00026 37.4 7.4 82 644-732 1-99 (174)
300 COG1086 Predicted nucleoside-d 73.2 25 0.00055 41.4 10.8 120 382-507 250-379 (588)
301 PRK05876 short chain dehydroge 73.0 13 0.00028 39.4 8.1 79 383-469 7-92 (275)
302 PRK07453 protochlorophyllide o 72.8 14 0.0003 40.0 8.5 80 382-469 6-92 (322)
303 PLN02695 GDP-D-mannose-3',5'-e 72.7 9.4 0.0002 42.5 7.2 73 641-729 20-93 (370)
304 PRK08085 gluconate 5-dehydroge 72.5 14 0.0003 38.2 8.1 79 383-469 10-95 (254)
305 COG1893 ApbA Ketopantoate redu 72.3 11 0.00023 41.3 7.4 80 644-737 2-86 (307)
306 PRK07523 gluconate 5-dehydroge 72.3 8.4 0.00018 39.8 6.4 77 642-729 10-95 (255)
307 PRK00258 aroE shikimate 5-dehy 72.3 10 0.00023 40.6 7.2 70 641-729 122-193 (278)
308 TIGR01316 gltA glutamate synth 72.2 5.3 0.00011 45.8 5.2 34 641-677 132-165 (449)
309 PRK00094 gpsA NAD(P)H-dependen 72.1 7 0.00015 42.3 5.9 41 644-689 3-43 (325)
310 TIGR03649 ergot_EASG ergot alk 72.1 8.4 0.00018 40.7 6.4 68 644-729 1-75 (285)
311 PRK07904 short chain dehydroge 72.1 12 0.00027 39.0 7.6 82 382-469 8-96 (253)
312 PLN02986 cinnamyl-alcohol dehy 72.0 13 0.00028 40.1 8.0 78 383-470 6-87 (322)
313 PRK06924 short chain dehydroge 71.9 12 0.00027 38.4 7.5 63 643-716 2-65 (251)
314 PRK09291 short chain dehydroge 71.8 12 0.00025 38.6 7.3 78 643-729 3-81 (257)
315 PRK05653 fabG 3-ketoacyl-(acyl 71.8 6.8 0.00015 39.8 5.4 78 643-729 6-90 (246)
316 TIGR03206 benzo_BadH 2-hydroxy 71.7 16 0.00034 37.4 8.2 80 382-469 3-89 (250)
317 TIGR02356 adenyl_thiF thiazole 71.7 40 0.00086 34.4 11.0 35 381-420 20-54 (202)
318 COG0373 HemA Glutamyl-tRNA red 71.7 10 0.00022 43.2 7.1 72 382-471 178-249 (414)
319 PRK08644 thiamine biosynthesis 71.6 10 0.00023 39.1 6.7 85 641-732 27-128 (212)
320 PRK15116 sulfur acceptor prote 71.6 20 0.00043 38.6 9.0 86 641-732 29-132 (268)
321 PLN02260 probable rhamnose bio 71.5 14 0.0003 44.6 8.8 81 642-729 6-88 (668)
322 PF10727 Rossmann-like: Rossma 71.4 8.9 0.00019 36.5 5.7 68 641-729 9-76 (127)
323 PLN02253 xanthoxin dehydrogena 71.3 15 0.00032 38.6 8.1 78 383-469 19-103 (280)
324 PRK08217 fabG 3-ketoacyl-(acyl 71.2 18 0.00038 37.0 8.4 79 642-729 5-90 (253)
325 PLN02494 adenosylhomocysteinas 71.2 6.3 0.00014 45.6 5.4 35 641-678 253-287 (477)
326 PRK08589 short chain dehydroge 71.2 15 0.00032 38.7 8.0 78 383-469 7-91 (272)
327 PLN02583 cinnamoyl-CoA reducta 71.1 16 0.00035 39.1 8.4 78 382-468 6-86 (297)
328 PF00070 Pyr_redox: Pyridine n 71.1 5.1 0.00011 34.2 3.7 32 384-421 1-32 (80)
329 PRK05565 fabG 3-ketoacyl-(acyl 71.1 9 0.0002 39.0 6.2 78 643-729 6-91 (247)
330 PRK09242 tropinone reductase; 71.1 10 0.00023 39.2 6.7 81 642-729 9-96 (257)
331 PRK06482 short chain dehydroge 71.0 15 0.00033 38.5 8.0 75 643-729 3-84 (276)
332 PF03807 F420_oxidored: NADP o 71.0 7.2 0.00016 34.2 4.7 43 644-688 1-44 (96)
333 PRK06196 oxidoreductase; Provi 71.0 14 0.00031 39.8 8.0 75 642-729 26-107 (315)
334 cd05291 HicDH_like L-2-hydroxy 70.9 3.3 7.2E-05 45.0 3.0 42 643-687 1-42 (306)
335 PF10087 DUF2325: Uncharacteri 70.8 14 0.00029 33.1 6.5 28 644-674 1-29 (97)
336 PRK12828 short chain dehydroge 70.8 10 0.00022 38.3 6.4 77 642-729 7-90 (239)
337 COG2910 Putative NADH-flavin r 70.7 9.8 0.00021 38.7 5.9 68 644-729 2-70 (211)
338 PRK09260 3-hydroxybutyryl-CoA 70.7 2.7 5.8E-05 45.2 2.2 39 643-686 2-40 (288)
339 PRK07831 short chain dehydroge 70.7 16 0.00034 38.0 8.0 82 641-729 16-105 (262)
340 PRK06057 short chain dehydroge 70.7 12 0.00025 38.9 6.9 74 383-469 8-88 (255)
341 PRK07666 fabG 3-ketoacyl-(acyl 70.7 9.4 0.0002 39.0 6.2 79 642-729 7-92 (239)
342 PRK06019 phosphoribosylaminoim 70.6 9.2 0.0002 42.7 6.5 65 643-725 3-67 (372)
343 PF01408 GFO_IDH_MocA: Oxidore 70.5 17 0.00037 33.0 7.3 68 644-729 2-70 (120)
344 PRK07417 arogenate dehydrogena 70.4 8.8 0.00019 41.0 6.1 65 384-469 2-66 (279)
345 PRK08125 bifunctional UDP-gluc 70.3 8.7 0.00019 46.3 6.7 78 380-469 313-391 (660)
346 PRK10217 dTDP-glucose 4,6-dehy 70.1 9.9 0.00021 41.5 6.6 77 643-729 2-82 (355)
347 PRK06953 short chain dehydroge 70.1 23 0.0005 35.8 8.9 72 384-469 3-79 (222)
348 TIGR02853 spore_dpaA dipicolin 70.1 38 0.00083 36.6 10.9 123 382-536 151-281 (287)
349 PRK13394 3-hydroxybutyrate deh 70.1 15 0.00033 37.9 7.6 79 642-729 7-92 (262)
350 PRK05693 short chain dehydroge 70.1 13 0.00029 38.9 7.3 74 383-470 2-82 (274)
351 PRK07677 short chain dehydroge 70.0 18 0.00038 37.4 8.1 78 384-469 3-87 (252)
352 PRK06197 short chain dehydroge 69.9 14 0.00031 39.5 7.7 82 641-729 15-103 (306)
353 COG0300 DltE Short-chain dehyd 69.8 8.6 0.00019 41.2 5.8 66 640-716 4-73 (265)
354 PRK08277 D-mannonate oxidoredu 69.8 15 0.00033 38.5 7.8 80 382-469 10-96 (278)
355 COG0499 SAM1 S-adenosylhomocys 69.7 6.2 0.00013 43.8 4.7 36 641-679 208-243 (420)
356 PRK09135 pteridine reductase; 69.6 14 0.0003 37.7 7.2 80 643-729 7-93 (249)
357 PRK08264 short chain dehydroge 69.5 17 0.00036 37.0 7.8 72 642-729 6-81 (238)
358 PRK08762 molybdopterin biosynt 69.5 12 0.00025 42.1 7.1 85 641-732 134-236 (376)
359 PRK05993 short chain dehydroge 69.4 11 0.00024 39.8 6.6 72 643-729 5-84 (277)
360 PRK07035 short chain dehydroge 69.4 18 0.00039 37.2 8.1 66 382-455 8-74 (252)
361 PRK05875 short chain dehydroge 69.4 12 0.00026 39.2 6.8 80 642-729 7-94 (276)
362 PRK12481 2-deoxy-D-gluconate 3 69.3 15 0.00033 38.1 7.5 77 642-729 8-91 (251)
363 PLN02253 xanthoxin dehydrogena 69.3 14 0.00031 38.8 7.4 77 642-729 18-102 (280)
364 TIGR01963 PHB_DH 3-hydroxybuty 69.2 17 0.00037 37.2 7.8 78 384-469 3-87 (255)
365 PF02826 2-Hacid_dh_C: D-isome 69.2 7.9 0.00017 38.6 5.1 37 640-679 34-70 (178)
366 PRK04148 hypothetical protein; 69.2 10 0.00022 36.5 5.5 56 642-713 17-72 (134)
367 PRK08263 short chain dehydroge 69.1 16 0.00035 38.3 7.7 76 384-470 5-87 (275)
368 PF01370 Epimerase: NAD depend 69.0 12 0.00025 37.9 6.4 70 645-729 1-73 (236)
369 cd00401 AdoHcyase S-adenosyl-L 69.0 10 0.00022 43.2 6.5 72 641-736 201-272 (413)
370 PRK08017 oxidoreductase; Provi 69.0 11 0.00024 38.7 6.4 59 643-716 3-62 (256)
371 KOG4440 NMDA selective glutama 69.0 7.7 0.00017 45.5 5.4 53 312-364 612-665 (993)
372 PRK06079 enoyl-(acyl carrier p 68.9 16 0.00035 38.0 7.6 62 383-455 8-72 (252)
373 PRK07775 short chain dehydroge 68.6 18 0.00039 38.1 8.0 82 381-470 9-97 (274)
374 PRK12429 3-hydroxybutyrate deh 68.5 10 0.00022 39.0 6.0 76 643-729 5-89 (258)
375 PRK09186 flagellin modificatio 68.5 12 0.00027 38.4 6.6 81 642-729 4-91 (256)
376 PRK05599 hypothetical protein; 68.4 16 0.00035 37.8 7.5 65 384-456 2-67 (246)
377 PLN02572 UDP-sulfoquinovose sy 68.4 15 0.00033 42.0 7.9 78 641-729 46-144 (442)
378 COG1249 Lpd Pyruvate/2-oxoglut 68.4 37 0.00081 39.2 10.9 45 640-687 171-221 (454)
379 PRK06483 dihydromonapterin red 68.3 14 0.00031 37.6 7.0 75 382-469 2-83 (236)
380 PLN02653 GDP-mannose 4,6-dehyd 68.3 12 0.00026 40.7 6.8 80 642-729 6-91 (340)
381 PF03446 NAD_binding_2: NAD bi 68.3 45 0.00098 32.5 10.2 93 383-506 2-97 (163)
382 PRK06953 short chain dehydroge 67.9 22 0.00048 35.9 8.2 72 643-729 2-78 (222)
383 PLN02686 cinnamoyl-CoA reducta 67.9 14 0.00031 41.1 7.3 83 641-729 52-136 (367)
384 PRK08063 enoyl-(acyl carrier p 67.8 20 0.00043 36.7 8.0 80 383-470 5-92 (250)
385 KOG1053 Glutamate-gated NMDA-t 67.8 26 0.00056 43.0 9.5 57 312-368 608-665 (1258)
386 PF02558 ApbA: Ketopantoate re 67.8 27 0.00059 33.2 8.3 73 385-469 1-76 (151)
387 PRK12769 putative oxidoreducta 67.8 12 0.00026 45.1 7.2 34 641-677 326-359 (654)
388 PRK12939 short chain dehydroge 67.7 14 0.00031 37.7 6.8 79 642-729 7-92 (250)
389 PRK05884 short chain dehydroge 67.7 13 0.00028 38.1 6.4 71 644-728 2-76 (223)
390 TIGR02415 23BDH acetoin reduct 67.6 17 0.00036 37.4 7.4 78 643-729 1-85 (254)
391 TIGR00872 gnd_rel 6-phosphoglu 67.6 51 0.0011 35.7 11.3 68 384-470 2-69 (298)
392 PRK05872 short chain dehydroge 67.5 19 0.00042 38.4 8.1 79 382-469 9-94 (296)
393 COG0499 SAM1 S-adenosylhomocys 67.5 9.7 0.00021 42.4 5.6 65 382-470 209-274 (420)
394 PRK12810 gltD glutamate syntha 67.5 7.3 0.00016 45.0 5.1 34 641-677 142-175 (471)
395 PRK08993 2-deoxy-D-gluconate 3 67.4 20 0.00044 37.1 7.9 77 642-729 10-93 (253)
396 PRK10538 malonic semialdehyde 67.4 20 0.00044 36.9 8.0 74 644-729 2-82 (248)
397 PRK08251 short chain dehydroge 67.3 14 0.0003 37.9 6.7 80 643-729 3-89 (248)
398 PRK12921 2-dehydropantoate 2-r 67.3 43 0.00094 35.8 10.7 38 383-427 1-38 (305)
399 PRK06181 short chain dehydroge 67.3 13 0.00028 38.6 6.4 78 643-729 2-86 (263)
400 PRK07889 enoyl-(acyl carrier p 67.1 16 0.00034 38.2 7.1 78 642-729 7-93 (256)
401 TIGR02622 CDP_4_6_dhtase CDP-g 67.0 15 0.00033 40.2 7.2 77 642-729 4-83 (349)
402 PRK10675 UDP-galactose-4-epime 66.9 15 0.00033 39.6 7.2 79 384-469 2-82 (338)
403 TIGR02354 thiF_fam2 thiamine b 66.9 23 0.00051 36.2 8.1 86 641-731 20-120 (200)
404 PRK12549 shikimate 5-dehydroge 66.8 7.5 0.00016 42.0 4.6 42 642-688 127-169 (284)
405 TIGR01963 PHB_DH 3-hydroxybuty 66.8 18 0.00038 37.1 7.3 77 643-729 2-86 (255)
406 PRK07904 short chain dehydroge 66.8 16 0.00035 38.1 7.1 80 641-729 7-95 (253)
407 PRK07201 short chain dehydroge 66.8 18 0.00039 43.2 8.4 77 644-729 2-85 (657)
408 PRK07067 sorbitol dehydrogenas 66.7 16 0.00035 37.8 7.0 76 642-729 6-88 (257)
409 PRK08862 short chain dehydroge 66.6 21 0.00046 36.7 7.9 65 383-455 6-71 (227)
410 PRK06567 putative bifunctional 66.6 20 0.00044 45.1 8.7 35 640-677 381-415 (1028)
411 PF03446 NAD_binding_2: NAD bi 66.5 18 0.00039 35.4 6.9 42 643-689 2-43 (163)
412 PRK12320 hypothetical protein; 66.5 25 0.00055 42.8 9.4 69 383-470 1-70 (699)
413 PRK08159 enoyl-(acyl carrier p 66.5 15 0.00033 38.8 6.9 77 642-729 10-96 (272)
414 PRK12548 shikimate 5-dehydroge 66.4 22 0.00048 38.4 8.2 81 382-470 126-209 (289)
415 TIGR01421 gluta_reduc_1 glutat 66.3 11 0.00024 43.3 6.2 33 642-677 166-198 (450)
416 PRK12824 acetoacetyl-CoA reduc 66.3 22 0.00048 36.1 7.9 79 643-729 3-88 (245)
417 PRK00536 speE spermidine synth 66.1 23 0.0005 37.9 8.1 73 381-468 72-147 (262)
418 PRK08643 acetoin reductase; Va 66.0 14 0.00031 38.1 6.5 76 643-729 3-87 (256)
419 COG0169 AroE Shikimate 5-dehyd 66.0 12 0.00027 40.4 6.1 43 641-688 125-168 (283)
420 PRK06079 enoyl-(acyl carrier p 65.9 18 0.00039 37.6 7.2 76 642-729 7-91 (252)
421 PRK12742 oxidoreductase; Provi 65.9 20 0.00042 36.5 7.4 75 642-729 6-83 (237)
422 PRK07825 short chain dehydroge 65.9 16 0.00034 38.3 6.9 74 643-729 6-86 (273)
423 PRK06113 7-alpha-hydroxysteroi 65.9 19 0.00042 37.2 7.4 77 642-729 11-96 (255)
424 PRK12779 putative bifunctional 65.7 11 0.00023 47.6 6.3 34 641-677 305-338 (944)
425 PRK07251 pyridine nucleotide-d 65.7 11 0.00024 42.8 6.0 34 641-677 156-189 (438)
426 cd01483 E1_enzyme_family Super 65.7 48 0.001 31.4 9.6 33 384-421 1-33 (143)
427 KOG1208 Dehydrogenases with di 65.7 22 0.00048 39.0 8.1 70 381-456 33-104 (314)
428 cd01075 NAD_bind_Leu_Phe_Val_D 65.7 12 0.00025 38.3 5.6 43 641-688 27-69 (200)
429 PRK06949 short chain dehydroge 65.7 15 0.00032 37.9 6.5 79 642-729 9-94 (258)
430 PRK07832 short chain dehydroge 65.7 21 0.00046 37.4 7.8 79 384-469 2-87 (272)
431 COG2985 Predicted permease [Ge 65.6 6.9 0.00015 44.9 4.1 57 561-621 211-268 (544)
432 PRK06057 short chain dehydroge 65.5 16 0.00035 37.8 6.8 74 642-729 7-87 (255)
433 PRK07063 short chain dehydroge 65.5 19 0.00041 37.3 7.3 81 642-729 7-94 (260)
434 PRK06125 short chain dehydroge 65.4 23 0.0005 36.7 7.9 80 383-469 8-90 (259)
435 PLN02206 UDP-glucuronate decar 65.4 21 0.00047 40.9 8.3 73 641-729 118-191 (442)
436 cd01485 E1-1_like Ubiquitin ac 65.4 30 0.00066 35.2 8.6 36 381-421 18-53 (198)
437 cd01484 E1-2_like Ubiquitin ac 65.3 17 0.00037 38.2 6.8 86 644-731 1-101 (234)
438 PRK06200 2,3-dihydroxy-2,3-dih 65.2 19 0.00041 37.5 7.2 76 642-729 6-88 (263)
439 PRK07424 bifunctional sterol d 65.2 25 0.00053 40.1 8.6 74 642-729 178-253 (406)
440 PRK06113 7-alpha-hydroxysteroi 65.1 24 0.00053 36.4 8.0 80 382-469 11-97 (255)
441 PRK07364 2-octaprenyl-6-methox 65.1 9.2 0.0002 42.8 5.2 36 641-679 17-52 (415)
442 PLN02686 cinnamoyl-CoA reducta 65.1 19 0.00041 40.1 7.6 80 381-468 52-136 (367)
443 PRK06940 short chain dehydroge 65.0 14 0.00031 39.0 6.4 75 643-729 3-84 (275)
444 PRK08594 enoyl-(acyl carrier p 64.9 22 0.00049 37.1 7.8 63 383-455 8-76 (257)
445 PRK14618 NAD(P)H-dependent gly 64.9 12 0.00025 41.0 5.8 40 644-688 6-45 (328)
446 PRK08339 short chain dehydroge 64.9 15 0.00033 38.4 6.5 80 642-729 8-93 (263)
447 PRK08628 short chain dehydroge 64.9 21 0.00046 36.8 7.5 78 383-469 8-92 (258)
448 PRK05717 oxidoreductase; Valid 64.8 24 0.00053 36.4 8.0 77 641-729 9-92 (255)
449 COG0287 TyrA Prephenate dehydr 64.8 18 0.00039 39.1 7.0 68 642-729 3-72 (279)
450 PLN02240 UDP-glucose 4-epimera 64.7 19 0.0004 39.2 7.4 77 643-729 6-89 (352)
451 PRK12921 2-dehydropantoate 2-r 64.7 19 0.00041 38.6 7.3 41 644-690 2-42 (305)
452 TIGR00417 speE spermidine synt 64.7 32 0.00069 36.7 8.9 80 641-729 72-153 (270)
453 PRK06125 short chain dehydroge 64.7 19 0.00042 37.3 7.2 80 642-729 7-89 (259)
454 PLN00198 anthocyanidin reducta 64.6 21 0.00046 38.8 7.8 80 382-470 9-90 (338)
455 PRK12745 3-ketoacyl-(acyl-carr 64.4 17 0.00036 37.5 6.6 79 643-729 3-88 (256)
456 PF07991 IlvN: Acetohydroxy ac 64.4 7.4 0.00016 38.7 3.7 65 382-469 4-69 (165)
457 PF02737 3HCDH_N: 3-hydroxyacy 64.3 13 0.00028 37.3 5.5 41 384-430 1-41 (180)
458 PRK05690 molybdopterin biosynt 64.3 27 0.00059 36.8 8.2 87 641-732 31-133 (245)
459 PRK05482 potassium-transportin 64.3 31 0.00067 40.8 9.2 70 290-359 418-501 (559)
460 PRK12771 putative glutamate sy 64.3 13 0.00028 43.9 6.4 35 640-677 135-169 (564)
461 PRK07806 short chain dehydroge 64.2 25 0.00053 36.0 7.8 79 383-469 7-93 (248)
462 PRK08213 gluconate 5-dehydroge 64.2 20 0.00044 37.0 7.3 79 642-729 12-97 (259)
463 PRK12746 short chain dehydroge 64.1 31 0.00066 35.5 8.5 79 641-729 5-98 (254)
464 PLN02366 spermidine synthase 63.9 60 0.0013 35.6 11.0 82 381-470 91-175 (308)
465 TIGR02622 CDP_4_6_dhtase CDP-g 63.8 19 0.00041 39.4 7.2 78 383-469 5-84 (349)
466 PRK12749 quinate/shikimate deh 63.7 18 0.0004 39.1 6.9 77 642-729 124-204 (288)
467 TIGR01832 kduD 2-deoxy-D-gluco 63.7 25 0.00054 36.0 7.7 76 383-469 6-89 (248)
468 cd00755 YgdL_like Family of ac 63.6 25 0.00055 36.8 7.7 89 642-734 11-115 (231)
469 PRK08177 short chain dehydroge 63.6 20 0.00043 36.4 6.9 74 383-469 2-80 (225)
470 PRK07984 enoyl-(acyl carrier p 63.5 33 0.00072 36.1 8.8 77 642-729 6-92 (262)
471 PRK07677 short chain dehydroge 63.4 17 0.00037 37.5 6.5 78 643-729 2-86 (252)
472 PRK14106 murD UDP-N-acetylmura 63.4 17 0.00036 41.5 6.9 73 382-470 5-78 (450)
473 PRK14620 NAD(P)H-dependent gly 63.4 29 0.00063 37.8 8.6 40 384-429 2-41 (326)
474 PRK07069 short chain dehydroge 63.3 26 0.00056 35.8 7.8 79 385-469 2-88 (251)
475 PRK09853 putative selenate red 63.3 11 0.00023 47.7 5.6 35 640-677 537-571 (1019)
476 PRK12938 acetyacetyl-CoA reduc 63.3 23 0.00049 36.2 7.3 79 643-729 4-89 (246)
477 PRK12809 putative oxidoreducta 63.1 13 0.00028 44.8 6.1 35 641-678 309-343 (639)
478 PRK08229 2-dehydropantoate 2-r 63.0 18 0.00038 39.6 6.8 42 643-690 3-44 (341)
479 PF01494 FAD_binding_3: FAD bi 62.9 9.6 0.00021 40.8 4.6 32 644-678 3-34 (356)
480 PRK06179 short chain dehydroge 62.9 14 0.00031 38.5 5.8 70 643-729 5-81 (270)
481 TIGR03325 BphB_TodD cis-2,3-di 62.9 25 0.00054 36.6 7.6 76 642-729 5-87 (262)
482 TIGR03315 Se_ygfK putative sel 62.8 17 0.00037 46.0 7.2 34 641-677 536-569 (1012)
483 TIGR00507 aroE shikimate 5-deh 62.8 21 0.00046 38.0 7.1 43 641-688 116-158 (270)
484 cd01491 Ube1_repeat1 Ubiquitin 62.8 18 0.00039 39.3 6.6 81 641-733 18-117 (286)
485 PF02719 Polysacc_synt_2: Poly 62.7 11 0.00025 40.9 5.0 80 385-469 1-86 (293)
486 PRK06223 malate dehydrogenase; 62.7 63 0.0014 34.9 10.9 76 383-470 3-80 (307)
487 PRK12744 short chain dehydroge 62.7 23 0.00049 36.7 7.3 79 642-729 8-97 (257)
488 TIGR01289 LPOR light-dependent 62.7 29 0.00062 37.6 8.3 81 382-469 3-90 (314)
489 PRK07814 short chain dehydroge 62.6 21 0.00046 37.2 7.0 79 642-729 10-95 (263)
490 PRK07097 gluconate 5-dehydroge 62.6 23 0.0005 36.9 7.3 79 642-729 10-95 (265)
491 PRK05786 fabG 3-ketoacyl-(acyl 62.6 29 0.00062 35.3 7.9 78 383-469 6-90 (238)
492 PRK00066 ldh L-lactate dehydro 62.5 45 0.00098 36.5 9.8 76 382-470 6-83 (315)
493 PRK07985 oxidoreductase; Provi 62.5 19 0.00041 38.5 6.8 81 642-729 49-136 (294)
494 PRK12778 putative bifunctional 62.5 12 0.00026 45.9 5.9 35 640-677 429-463 (752)
495 cd01080 NAD_bind_m-THF_DH_Cycl 62.4 21 0.00045 35.6 6.5 44 640-687 42-86 (168)
496 PRK12827 short chain dehydroge 62.4 28 0.0006 35.4 7.8 81 382-470 6-97 (249)
497 PRK05867 short chain dehydroge 62.4 19 0.0004 37.3 6.5 77 642-729 9-94 (253)
498 TIGR01809 Shik-DH-AROM shikima 62.4 16 0.00036 39.2 6.2 43 641-688 124-167 (282)
499 PRK06947 glucose-1-dehydrogena 62.3 32 0.00068 35.2 8.2 80 382-469 2-89 (248)
500 PRK06198 short chain dehydroge 62.3 26 0.00057 36.1 7.7 79 383-469 7-93 (260)
No 1
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.97 E-value=6.1e-30 Score=283.07 Aligned_cols=233 Identities=20% Similarity=0.234 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHHhhhhhhccC------CCHHHHHHHHHHhhhcCCCCCC-CCCccChhhhhHHHHHHHHHHHHHHHHHHH
Q 004585 291 LLFATIFLIIFGGLALYAVSD------SSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSD 363 (744)
Q Consensus 291 L~~~~l~lil~g~l~~~~ie~------~s~~dA~y~~~~tltTvGygd~-~~t~~gRi~~v~lil~Gi~i~a~lig~It~ 363 (744)
.++.+..+++.|+++++++++ .++.|||||+++|+||+||||. |.+..||+|+++++++|+++|++.++.++.
T Consensus 140 ~~~~~~~l~~~~~~g~~~~~~~f~~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~ 219 (393)
T PRK10537 140 AVISITSLLFYSTFGALYLGDGFSPPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFG 219 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHccccCcCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666777777776664 6999999999999999999998 788899999999999999999988887664
Q ss_pred -HHHHHHhhhccCcc-ceeecCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEE
Q 004585 364 -AISEKVDSLRKGKS-EVIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVI 441 (744)
Q Consensus 364 -~i~~~l~~lr~G~~-~v~~k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~ 441 (744)
.+.+++++..+++. ....+||+||||||+.|..++++|.+.+ .+|+++|.|+. ++.. ..++.
T Consensus 220 p~i~~~l~~~~~~~~~~~~~k~HvII~G~g~lg~~v~~~L~~~g------~~vvVId~d~~--~~~~--------~~g~~ 283 (393)
T PRK10537 220 PVIRGNLKRLVKGRISHMHRKDHFIICGHSPLAINTYLGLRQRG------QAVTVIVPLGL--EHRL--------PDDAD 283 (393)
T ss_pred HHHHHHHHHHHHhhhhhcccCCeEEEECCChHHHHHHHHHHHCC------CCEEEEECchh--hhhc--------cCCCc
Confidence 55555655433332 2345899999999999999999997643 57888887642 2221 23567
Q ss_pred EEEeCCCCHHHHhccCcccccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCccEEEEecCCCCHHHHHHcCCCeeeE
Q 004585 442 CRSGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIET 521 (744)
Q Consensus 442 ~i~Gd~t~~e~L~rAgI~~A~aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d~e~~~~lk~~Gad~Ve~ 521 (744)
++.||++++++|++||+++|+++|++++ +|++|+.+++++|+++|+ .+|||++.++++.++++.+|+|.|
T Consensus 284 vI~GD~td~e~L~~AgI~~A~aVI~~t~------dD~~Nl~ivL~ar~l~p~--~kIIa~v~~~~~~~~L~~~GaD~V-- 353 (393)
T PRK10537 284 LIPGDSSDSAVLKKAGAARARAILALRD------NDADNAFVVLAAKEMSSD--VKTVAAVNDSKNLEKIKRVHPDMI-- 353 (393)
T ss_pred EEEeCCCCHHHHHhcCcccCCEEEEcCC------ChHHHHHHHHHHHHhCCC--CcEEEEECCHHHHHHHHhcCCCEE--
Confidence 8999999999999999999999999995 599999999999999984 589999999999999999999984
Q ss_pred eccHHHHHHHHHHHhcCCcH-HHHHHHHh
Q 004585 522 VVAHDVIGRLMIQCALQPGL-AQIWEDIL 549 (744)
Q Consensus 522 Vis~el~a~lLaq~~~~Pg~-~~Vl~~Ll 549 (744)
|++.++.++.+++.+..+.+ .+.+.+++
T Consensus 354 Isp~~l~g~~la~~l~g~~I~~~~i~~~~ 382 (393)
T PRK10537 354 FSPQLLGSELLARTLNGEEIDNDMITSML 382 (393)
T ss_pred ECHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 77777889999999887655 34555555
No 2
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=99.97 E-value=7.2e-30 Score=288.33 Aligned_cols=305 Identities=18% Similarity=0.187 Sum_probs=246.1
Q ss_pred CeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCccccc
Q 004585 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (744)
Q Consensus 383 ~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~ 462 (744)
+||+|||+|..|..+++.|...+ +.|+++|.+++..+.+.+ ..++.++.||+++.++|+++++++|+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g------~~v~vid~~~~~~~~~~~-------~~~~~~~~gd~~~~~~l~~~~~~~a~ 67 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGEN------NDVTVIDTDEERLRRLQD-------RLDVRTVVGNGSSPDVLREAGAEDAD 67 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC------CcEEEEECCHHHHHHHHh-------hcCEEEEEeCCCCHHHHHHcCCCcCC
Confidence 48999999999999999998653 688999999988776532 13578899999999999999999999
Q ss_pred EEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCccEEEEecCCCC---HHHH--HHcCCCeeeEeccHHHHHHHHHHHhc
Q 004585 463 AIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDN---EPLV--KLVGGELIETVVAHDVIGRLMIQCAL 537 (744)
Q Consensus 463 aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d~e~---~~~l--k~~Gad~Ve~Vis~el~a~lLaq~~~ 537 (744)
++|++++ +|..|+.+++.+|.+++. .++|+++.+.++ ...+ +.+|++.| |.+.++.+..|++.+.
T Consensus 68 ~vi~~~~------~~~~n~~~~~~~r~~~~~--~~ii~~~~~~~~~~~~~l~~~~~~G~~~v--i~p~~~~a~~l~~~l~ 137 (453)
T PRK09496 68 LLIAVTD------SDETNMVACQIAKSLFGA--PTTIARVRNPEYAEYDKLFSKEALGIDLL--ISPELLVAREIARLIE 137 (453)
T ss_pred EEEEecC------ChHHHHHHHHHHHHhcCC--CeEEEEECCccccchhhhhhhhcCCccEE--ECHHHHHHHHHHHHhc
Confidence 9999995 488999999999999764 479999988776 3344 67899974 7777788999999999
Q ss_pred CCcHHHHHHHHhcCCC---cceeeccCCccCCCcHHhHhhh-C-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEE
Q 004585 538 QPGLAQIWEDILGFEN---AEFYIKRWPQLDDLRFEEVVIS-F-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVI 612 (744)
Q Consensus 538 ~Pg~~~Vl~~Ll~~~g---~ei~v~~~p~lvG~tf~El~~~-~-~~~iVIGI~r~~~~g~~~lnP~~dtvI~~GD~LiVI 612 (744)
.|+..+++. + .... .++.+.+.+++.|+++.|+..+ . .++.+++|.| +|+ .+.|+++++|++||+|+++
T Consensus 138 ~~~~~~~~~-~-~~~~~~i~e~~V~~~s~~~g~~l~~l~~~~~~~~~~vi~i~r---~~~-~~~p~~~~~l~~gD~l~v~ 211 (453)
T PRK09496 138 YPGALDVEE-F-ADGRVQLVEVKVYEGSPLVGKPLSDLREHFPDIDVRVVAIFR---GGR-LIIPRGDTVIEAGDEVYFI 211 (453)
T ss_pred CCCceEeee-e-cCCeEEEEEEEeCCCCccCCcCHHHhhhhcCCCceEEEEEEE---CCE-EEcCCCCcEecCCCEEEEE
Confidence 999876543 1 1111 2344555678999999999865 3 5799999987 355 5689999999999999999
Q ss_pred EeCCCCCCCCCCccccccccccCCCCCCCCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCC
Q 004585 613 AEDDDTYAPGPLPEVCKRSFLKIPDPPKYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLD 692 (744)
Q Consensus 613 a~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~ 692 (744)
|+.+++.++... .+......++++|||||+.|..+++.|.+. |.++++|+.+ +++++.+.+
T Consensus 212 g~~~~l~~~~~~----------~~~~~~~~~~iiIiG~G~~g~~l~~~L~~~---~~~v~vid~~--~~~~~~~~~---- 272 (453)
T PRK09496 212 GAREHIRAVMSE----------FGRLEKPVKRVMIVGGGNIGYYLAKLLEKE---GYSVKLIERD--PERAEELAE---- 272 (453)
T ss_pred eCHHHHHHHHHH----------hCccCCCCCEEEEECCCHHHHHHHHHHHhC---CCeEEEEECC--HHHHHHHHH----
Confidence 999877654321 112224468999999999999999999874 8999999975 477777765
Q ss_pred cCCCCCceEEEEEcCcCCHhhHhcCCCCCcceEEEec--Cchhhhhhhc
Q 004585 693 ISGLMNIKLVHREGNAVIRRHLESLPLETFDSMSHWK--TRLCILTHVL 739 (744)
Q Consensus 693 ~~~L~n~~V~~i~GD~td~~~L~e~~I~~~DavIilT--de~ni~t~~~ 739 (744)
++.+.. +++||+++++.|++++++++|++|+++ |+.|++++++
T Consensus 273 --~~~~~~--~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~ 317 (453)
T PRK09496 273 --ELPNTL--VLHGDGTDQELLEEEGIDEADAFIALTNDDEANILSSLL 317 (453)
T ss_pred --HCCCCe--EEECCCCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHH
Confidence 233444 489999999999999999999999998 8999998764
No 3
>PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants. They have been implicated in modulating the nuclear membrane envelope potential [].
Probab=99.94 E-value=3e-26 Score=220.17 Aligned_cols=201 Identities=50% Similarity=0.832 Sum_probs=173.9
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCccEEEEecCCCCHHHHHHcCCCeeeEeccHHHHHHHHHHHhcCCc
Q 004585 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPG 540 (744)
Q Consensus 461 A~aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d~e~~~~lk~~Gad~Ve~Vis~el~a~lLaq~~~~Pg 540 (744)
|++||+++.+.+++++|+++++.+|++..+..+.+.|+|+++.|.++.++++..|+..|+.| +++++++|.||+++||
T Consensus 1 ARaIIiL~~k~d~ye~Da~a~lsVLaL~~v~e~~~g~vIVE~S~~~t~~LlKsv~G~~VetV--~dv~skL~VQCsRQ~G 78 (206)
T PF06241_consen 1 ARAIIILAEKEDRYESDADAFLSVLALQPVKEGLSGHVIVEVSDSDTEQLLKSVSGLKVETV--HDVISKLMVQCSRQPG 78 (206)
T ss_pred CceEEEeCCCCCcchhhHHHHHHHhhcccccccCcccEEEEecCCChHHHHHhhcCceeeeH--HHHHHHHHHHhccCcc
Confidence 78999999999999999999999999999887777899999999999999999999999887 8899999999999999
Q ss_pred HHHHHHHHhcCCCcceeeccCCccCCCcHHhHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCC
Q 004585 541 LAQIWEDILGFENAEFYIKRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYA 620 (744)
Q Consensus 541 ~~~Vl~~Ll~~~g~ei~v~~~p~lvG~tf~El~~~~~~~iVIGI~r~~~~g~~~lnP~~dtvI~~GD~LiVIa~~~~~~~ 620 (744)
+.++++++++++.++||+..||.+.|++|+|+.+.|+++++|||.| +|++.+||++|+++++||+++|||+.+.-..
T Consensus 79 L~~Iy~~iL~~~k~vf~l~~~P~L~Gm~y~dvr~~Fpdav~CGv~r---~GkI~fhP~Dd~vL~e~DklLvIa~~~~~~~ 155 (206)
T PF06241_consen 79 LAQIYEDILGFEKNVFNLKRWPQLDGMKYRDVRRSFPDAVVCGVKR---DGKIVFHPDDDYVLREGDKLLVIAPVNGKRP 155 (206)
T ss_pred HHHHHHHHhCCCCcEEEEecCcccCCcCHHHHHhcCCcceeeeeee---CCeeEECCCCCceeecCCEEEEEeecCCccc
Confidence 9999999999999999999999999999999999999999999997 5899999999999999999999999876432
Q ss_pred CCCCccccccccccCCCCCCCCceEEEEcccchHHHHHHHHHhhcCCCCE
Q 004585 621 PGPLPEVCKRSFLKIPDPPKYPEKILFCGWRRDIDDMIMVLEAFLAPGSE 670 (744)
Q Consensus 621 ~~~~p~v~~~~~~~~~~~~~~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~ 670 (744)
-..++.+... +. ..++..++.++++|.-+...++.+..+.+..+++
T Consensus 156 ~~~~~~v~~~---n~-~~~~~~~~~~~e~~k~rl~nivkrp~kslsk~Sd 201 (206)
T PF06241_consen 156 QTAYPSVRME---NI-TSPEDVRKHAFELWKTRLENIVKRPNKSLSKGSD 201 (206)
T ss_pred eEeccccccc---cc-cCCCchhhhhhhhhHhHHHHHHhCcccccccccc
Confidence 1122333211 11 2234566789999999999999988765544443
No 4
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.92 E-value=6.4e-26 Score=247.15 Aligned_cols=340 Identities=19% Similarity=0.287 Sum_probs=252.9
Q ss_pred CChhHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHhhhhhhccC-------------CCHHHHHHHHHHhhhcCCCCC
Q 004585 266 VPLKKRVAYSVDVCFSVYPYAKLLALLFATIFLIIFGGLALYAVSD-------------SSFAEALWLSWTFVADSGNHA 332 (744)
Q Consensus 266 v~l~~rl~y~ld~~ls~~~~~~~l~L~~~~l~lil~g~l~~~~ie~-------------~s~~dA~y~~~~tltTvGygd 332 (744)
+...+.++|- +.+.+...-++..|+.+.+.+.+.++.+.+.+|+ .++++++|+.++|++|+||||
T Consensus 230 mtvpdilqyl--nilktsssirl~qlvsifisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygd 307 (1103)
T KOG1420|consen 230 MTVPDILQYL--NILKTSSSIRLVQLVSIFISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGD 307 (1103)
T ss_pred ccHHHHHHHH--HHHhccchhhHHHHHHHHHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccc
Confidence 3344445542 4555555556666666666777777777777763 578999999999999999999
Q ss_pred C-CCCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcc-ceeecCeEEEEccccc--HHHHHHHHHHhcccC
Q 004585 333 D-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEKVDSLRKGKS-EVIEKNHILILGWSDK--LGSLLKQLAVANKSI 408 (744)
Q Consensus 333 ~-~~t~~gRi~~v~lil~Gi~i~a~lig~It~~i~~~l~~lr~G~~-~v~~k~HIII~G~g~~--g~~Ll~eL~~~~~~~ 408 (744)
. -.|..||+|.++.+++|+++|+..+.-|++.+.++ .++. |.. ....+.||||||.-.. ..++++.+.++++..
T Consensus 308 vyc~t~lgrlfmvffil~glamfasyvpeiielignr-~kyg-geyk~ehgkkhivvcghityesvshflkdflhedrdd 385 (1103)
T KOG1420|consen 308 VYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNR-KKYG-GEYKAEHGKKHIVVCGHITYESVSHFLKDFLHEDRDD 385 (1103)
T ss_pred eeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccc-cccC-ceeehhcCCeeEEEecceeHHHHHHHHHHHhhccccc
Confidence 8 58889999999999999999999888888887765 1111 222 2457899999998653 566777777654322
Q ss_pred CCCeEEEEEcCChH-HHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCcccccEEEEecCC--CCCCcchHHHHHHHH
Q 004585 409 GGGVIVVLAERDKE-EMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARAIIVLASD--ENADQSDARALRVVL 485 (744)
Q Consensus 409 ~~~~iVVLid~d~e-~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~aVIiltdd--~~~~~sD~~NI~~~L 485 (744)
-+-.+|.+-...|+ ++|.+..+ .-+.|.+.+|...++.+|.|+.+++||++++++++ .+++.+|+.||+.+.
T Consensus 386 vdvevvflhr~~pdleleglfkr-----hft~veffqgtvmnp~dl~rvki~~adaclvlankyc~dpdaedaanimrvi 460 (1103)
T KOG1420|consen 386 VDVEVVFLHRISPDLELEGLFKR-----HFTQVEFFQGTVMNPHDLARVKIESADACLVLANKYCADPDAEDAANIMRVI 460 (1103)
T ss_pred cceEEEEEecCCCCcchHHHHhh-----heeeEEEecccccChhhhhheeccccceeeeecccccCCCChhhhhhheEEE
Confidence 12233444444443 34544433 34689999999999999999999999999999998 578899999999999
Q ss_pred HHhhhcCCCCccEEEEecCCCCHHHHHHc------CCCeeeEeccHHHHHHHHHHHhcCCcHHHHHHHHhcCC-------
Q 004585 486 SLTGVKEGLRGHVVVEMSDLDNEPLVKLV------GGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGFE------- 552 (744)
Q Consensus 486 sar~l~p~~~~~IIArv~d~e~~~~lk~~------Gad~Ve~Vis~el~a~lLaq~~~~Pg~~~Vl~~Ll~~~------- 552 (744)
++|++.+++ ++|.++..-.|+.++-.. .+|. +||-.|+.-..|||+|+.||.+..+.+|+.-.
T Consensus 461 siknys~di--rvi~qlmqyhnkayllnipswdwk~gdd--viclaelklgfiaqsclapgfstmmanlfamrsfktsp~ 536 (1103)
T KOG1420|consen 461 SIKNYSPDI--RVITQLMQYHNKAYLLNIPSWDWKEGDD--VICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKTSPE 536 (1103)
T ss_pred EeccCCCch--hHHHHHHHhhchheeecCCCcccccCCc--eEEehhhhhhhhHHHhhcccHHHHHHHHHHHHhccCCcc
Confidence 999999854 688777665665544321 2333 48889999999999999999999999998421
Q ss_pred ------------CcceeeccC-CccCCCcHHhHhhh-C--CCeEEEEEEEeec---CCeEEeCCCCCceecCCCEEEEEE
Q 004585 553 ------------NAEFYIKRW-PQLDDLRFEEVVIS-F--PDAIPCGIKVAAE---GGKIILNPDDNYVLKEGDEVLVIA 613 (744)
Q Consensus 553 ------------g~ei~v~~~-p~lvG~tf~El~~~-~--~~~iVIGI~r~~~---~g~~~lnP~~dtvI~~GD~LiVIa 613 (744)
|.|.|.+.. |.++|++|.++... | -+..+++|....+ +.++.+||....+|++|..-++||
T Consensus 537 ~~~w~ndylrg~gmemyte~lsp~f~g~sfp~a~elcf~klkllllaie~k~een~es~i~inpg~h~kiq~~tqgffia 616 (1103)
T KOG1420|consen 537 EDTWQNDYLRGVGMEMYTEYLSPAFVGLSFPTACELCFVKLKLLLLAIEYKDEENRESRILINPGNHLKIQEGTQGFFIA 616 (1103)
T ss_pred cchhHHHHHhhcchhHhhhhcCHhhcCCchHHHHHHHHHHHHHhheeeeeccccCccceeEeCCCCCceeccCCceEEEe
Confidence 246676665 57999999887654 3 2567788864322 245889999999999999999999
Q ss_pred eCCCC
Q 004585 614 EDDDT 618 (744)
Q Consensus 614 ~~~~~ 618 (744)
.+.+.
T Consensus 617 qsade 621 (1103)
T KOG1420|consen 617 QSADE 621 (1103)
T ss_pred cchHH
Confidence 87554
No 5
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.9e-23 Score=214.45 Aligned_cols=213 Identities=19% Similarity=0.236 Sum_probs=178.0
Q ss_pred CeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCccccc
Q 004585 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (744)
Q Consensus 383 ~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~ 462 (744)
+.++|+|.|++|..+++.|.+.+ +.|+++|.|++.+++.+.. ..++.++.||++++++|++||+++||
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g------~~Vv~Id~d~~~~~~~~~~------~~~~~~v~gd~t~~~~L~~agi~~aD 68 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG------HNVVLIDRDEERVEEFLAD------ELDTHVVIGDATDEDVLEEAGIDDAD 68 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC------CceEEEEcCHHHHHHHhhh------hcceEEEEecCCCHHHHHhcCCCcCC
Confidence 36899999999999999999764 7899999999998875442 25788999999999999999999999
Q ss_pred EEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCccEEEEecCCCCHHHHHHcCCCeeeEeccHHHHHHHHHHHhcCCcHH
Q 004585 463 AIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPGLA 542 (744)
Q Consensus 463 aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d~e~~~~lk~~Gad~Ve~Vis~el~a~lLaq~~~~Pg~~ 542 (744)
++|++++ +|+.|+..|+.+++.+. .+++||+++++++.+.++..|++.+ +.++...+..+++.+..|++.
T Consensus 69 ~vva~t~------~d~~N~i~~~la~~~~g--v~~viar~~~~~~~~~~~~~g~~~i--i~Pe~~~~~~l~~~i~~p~~~ 138 (225)
T COG0569 69 AVVAATG------NDEVNSVLALLALKEFG--VPRVIARARNPEHEKVLEKLGADVI--ISPEKLAAKRLARLIVTPGAL 138 (225)
T ss_pred EEEEeeC------CCHHHHHHHHHHHHhcC--CCcEEEEecCHHHHHHHHHcCCcEE--ECHHHHHHHHHHHHhcCCChh
Confidence 9999995 59999999988877443 2589999999999999999999974 666667899999999999999
Q ss_pred HHHHHHhcCCCc---ceeeccCCccCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCC
Q 004585 543 QIWEDILGFENA---EFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDT 618 (744)
Q Consensus 543 ~Vl~~Ll~~~g~---ei~v~~~p~lvG~tf~El~~~~-~~~iVIGI~r~~~~g~~~lnP~~dtvI~~GD~LiVIa~~~~~ 618 (744)
+++..- .+.. ++.+.+.++++|++++|+..++ .++.+++|.|. +...+.|+++++|++||+++++|..+.+
T Consensus 139 ~~~~~~--~~~~~~~~~~v~~~~~~~g~~L~el~~~~~~~~~vvai~r~---~~~~~~p~g~~~l~~gD~l~v~~~~~~i 213 (225)
T COG0569 139 DVLELA--GGDAEVIEEKVAEDSPLAGKTLRELDLRLPYDVNVIAIKRG---GNELIIPRGDTTLEAGDRLIVIGAPEAL 213 (225)
T ss_pred eEEeec--CCcceEEEEEecCCCccCCcCHHHhcccCCCCcEEEEEecC---CCceecCCCCCEecCCCEEEEEEcHHHH
Confidence 987621 1122 3334455689999999999665 57999999972 3267899999999999999999999877
Q ss_pred CCCC
Q 004585 619 YAPG 622 (744)
Q Consensus 619 ~~~~ 622 (744)
.++.
T Consensus 214 ~~~~ 217 (225)
T COG0569 214 REVE 217 (225)
T ss_pred HHHH
Confidence 6653
No 6
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=99.86 E-value=1.3e-20 Score=212.92 Aligned_cols=212 Identities=17% Similarity=0.190 Sum_probs=177.5
Q ss_pred ecCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCccc
Q 004585 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (744)
Q Consensus 381 ~k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (744)
..+|+||||+|..|..+++.|...+ +.|+++|.|++.++.+.++ ..++.++.||+++++.|+++++++
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~------~~v~vid~~~~~~~~~~~~------~~~~~~i~gd~~~~~~L~~~~~~~ 297 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEG------YSVKLIERDPERAEELAEE------LPNTLVLHGDGTDQELLEEEGIDE 297 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC------CeEEEEECCHHHHHHHHHH------CCCCeEEECCCCCHHHHHhcCCcc
Confidence 4789999999999999999998643 6899999999887766442 235778999999999999999999
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCccEEEEecCCCCHHHHHHcCCCeeeEeccHHHHHHHHHHHhcCCc
Q 004585 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPG 540 (744)
Q Consensus 461 A~aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d~e~~~~lk~~Gad~Ve~Vis~el~a~lLaq~~~~Pg 540 (744)
|+++|++++ +|..|+.+++.+|++++ .++|+++.++++.+.++.+|++.| +.++.+.+..+++.+..|+
T Consensus 298 a~~vi~~~~------~~~~n~~~~~~~~~~~~---~~ii~~~~~~~~~~~~~~~g~~~v--i~p~~~~~~~~~~~~~~~~ 366 (453)
T PRK09496 298 ADAFIALTN------DDEANILSSLLAKRLGA---KKVIALVNRPAYVDLVEGLGIDIA--ISPRQATASEILRHVRRGD 366 (453)
T ss_pred CCEEEECCC------CcHHHHHHHHHHHHhCC---CeEEEEECCcchHHHHHhcCCCEE--ECHHHHHHHHHHHHhhccc
Confidence 999999995 48899999999999865 379999999999999999999974 6667778999999999999
Q ss_pred HHHHHHHHhcC--CCcceeeccCCccCCCcHHhHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCC-
Q 004585 541 LAQIWEDILGF--ENAEFYIKRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDD- 617 (744)
Q Consensus 541 ~~~Vl~~Ll~~--~g~ei~v~~~p~lvG~tf~El~~~~~~~iVIGI~r~~~~g~~~lnP~~dtvI~~GD~LiVIa~~~~- 617 (744)
+..+.. +... +..++.+.+.++++|++++|+... .++.+++|.| +|+. ++|+++++|++||.++++|+.++
T Consensus 367 ~~~~~~-~~~~~~~~~~~~v~~~s~~~g~~l~el~l~-~~~~i~~i~r---~~~~-~~p~~~~~l~~gD~l~v~~~~~~~ 440 (453)
T PRK09496 367 IVAVHS-LRRGAAEAIEAVAHETSKVVGKPLKDLKLP-KGVLIGAIVR---GGEV-IIPTGDTVIEPGDHVIVFVLDKKF 440 (453)
T ss_pred hhhhhh-hcCCcEEEEEEEeCCCChhccCCHHHcCCC-CCCEEEEEEE---CCEE-EcCCCCcEECCCCEEEEEEcCcch
Confidence 877654 2111 123566667789999999999743 4899999998 4665 78999999999999999999998
Q ss_pred CCCC
Q 004585 618 TYAP 621 (744)
Q Consensus 618 ~~~~ 621 (744)
+.++
T Consensus 441 ~~~~ 444 (453)
T PRK09496 441 VPDV 444 (453)
T ss_pred HHHH
Confidence 6543
No 7
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=99.83 E-value=4.9e-20 Score=200.59 Aligned_cols=319 Identities=13% Similarity=0.180 Sum_probs=226.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhcc-----CCCHHHHHHHHHHhhhcCCCCCC-CCCccChhhhhHHHHHHHHHHHHHH
Q 004585 285 YAKLLALLFATIFLIIFGGLALYAVS-----DSSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMML 358 (744)
Q Consensus 285 ~~~~l~L~~~~l~lil~g~l~~~~ie-----~~s~~dA~y~~~~tltTvGygd~-~~t~~gRi~~v~lil~Gi~i~a~li 358 (744)
+.|++.|..+++++++.|.+..-.+. ..+++.++|++++|++|+||||. |.-|+.++..++++.+.++++...+
T Consensus 184 ~~ql~ll~s~l~clift~~c~i~h~qra~~k~i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~ 263 (1087)
T KOG3193|consen 184 FRQLLLLFSVLACLIFTGMCSIEHLQRARGKRIDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQL 263 (1087)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHccCceeeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHH
Confidence 44556665666677777777765553 37899999999999999999998 7888999999999888888776555
Q ss_pred HHHHHHHHHHHhhhccCcc--ce-eecCeEEEEcccccHH---HHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhh-
Q 004585 359 GLVSDAISEKVDSLRKGKS--EV-IEKNHILILGWSDKLG---SLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKL- 431 (744)
Q Consensus 359 g~It~~i~~~l~~lr~G~~--~v-~~k~HIII~G~g~~g~---~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~- 431 (744)
.-+.....+ +-+.|.. .. ..+.|+|||--.-... .+++++....+ .....||+. .|.+++...+-+
T Consensus 264 ~~l~~tw~e---rqk~g~~~ss~~~~e~hvvv~~ttl~~~~i~dfl~efyahp~--~q~~~ivll--sp~eld~~~rmll 336 (1087)
T KOG3193|consen 264 DELGQTWSE---RQKSGTDFSSWNGVESHVVVTITTLEVEFIRDFLEEFYAHPE--NQRIQIVLL--SPAELDNQTRMLL 336 (1087)
T ss_pred HHHHHHHHH---HhhcCCCccccccccceEEEEEeeeeHHHHHHHHHHHhcCcc--cccEEEEEe--chHHhcchhhhhe
Confidence 544433333 2333432 11 2567999998765443 34444443211 122333333 233333332221
Q ss_pred hcccCCCcEEEEEeCCCCHHHHhccCcccccEEEEecCCC--CCCcchHHHHHHHHHHhhhcCCCCccEEEEecCCCCHH
Q 004585 432 EFDFMGTSVICRSGSPLILADLKKVSVSKARAIIVLASDE--NADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEP 509 (744)
Q Consensus 432 ~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~aVIiltdd~--~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d~e~~~ 509 (744)
..++++.++.+++|+....++|+||++..|+++++++... +-...|+.+|+..+++|.+.|+. +-++++-.++.+-
T Consensus 337 kiplwnnrvhyv~gs~lrd~dl~ra~~~~s~acfilsar~~~~k~a~dehtilrswaikdfapnv--~qyvqifr~e~k~ 414 (1087)
T KOG3193|consen 337 KIPLWNNRVHYVRGSSLRDEDLERANVATSKACFILSARHVNRKVATDEHTILRSWAIKDFAPNV--KQYVQIFRAETKM 414 (1087)
T ss_pred eccccccceeeecccccccchhhhhhhcccchheeeehhhhccccccchhhHHHHHhhhhcCCch--HHHhhhhchhhhh
Confidence 3466788999999999999999999999999999998763 33467999999999999999864 5666777666665
Q ss_pred HHHHcCCCeeeEeccHHHHHHHHHHHhcCCcHHHHHHHHhcC----C----------------Ccceeecc--C----Cc
Q 004585 510 LVKLVGGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGF----E----------------NAEFYIKR--W----PQ 563 (744)
Q Consensus 510 ~lk~~Gad~Ve~Vis~el~a~lLaq~~~~Pg~~~Vl~~Ll~~----~----------------g~ei~v~~--~----p~ 563 (744)
+.+. ++. +||-+|+.-.++|+.|.+||++.++.-|+.. + |+|+|-.. . .+
T Consensus 415 hi~~--ae~--~icedefkyallannc~cpg~st~itll~htsrg~egq~s~e~whk~yg~~sgne~y~i~~~dskff~e 490 (1087)
T KOG3193|consen 415 HIEH--AEV--LICEDEFKYALLANNCICPGISTFITLLMHTSRGEEGQKSTEPWHKVYGFHSGNEMYQIKVQDSKFFCE 490 (1087)
T ss_pred hhhh--hee--EEehhhHHHHHHhcCCcCCCHHHHHHHHhhhccccccCCCCchHHHHhccccCCeEEEEEecccceeee
Confidence 5553 334 3777889999999999999999999877743 1 35565332 2 37
Q ss_pred cCCCcHHhHhhh---CCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCC
Q 004585 564 LDDLRFEEVVIS---FPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDD 616 (744)
Q Consensus 564 lvG~tf~El~~~---~~~~iVIGI~r~~~~g~~~lnP~~dtvI~~GD~LiVIa~~~ 616 (744)
++|++|.....+ ..++-++|+........+.+||.+..++++.|.+|+++-.+
T Consensus 491 y~gksfs~~sfhahk~ygi~li~v~p~~~~~~~~lnpg~~hi~~~~dt~yym~lt~ 546 (1087)
T KOG3193|consen 491 YVGKSFSSTSFHAHKEYGIGLIAVSPDGDTSRMKLNPGSSHIIQPTDTVYYMGLTN 546 (1087)
T ss_pred ecccccchhhhhhhhhcCeEEEEEcCCCCcceeecCCCcccccCCCCeEEEEeccc
Confidence 899999877654 25788999974322345789999999999999999998654
No 8
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=99.74 E-value=1.3e-16 Score=185.56 Aligned_cols=141 Identities=16% Similarity=0.172 Sum_probs=124.2
Q ss_pred ecCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCccc
Q 004585 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (744)
Q Consensus 381 ~k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (744)
.+||+||||+|+.|..++++|.+.+ ++|+++|+|++++++..+ .++.++.||++++++|++|++++
T Consensus 416 ~~~hiiI~G~G~~G~~la~~L~~~g------~~vvvId~d~~~~~~~~~--------~g~~~i~GD~~~~~~L~~a~i~~ 481 (558)
T PRK10669 416 ICNHALLVGYGRVGSLLGEKLLAAG------IPLVVIETSRTRVDELRE--------RGIRAVLGNAANEEIMQLAHLDC 481 (558)
T ss_pred cCCCEEEECCChHHHHHHHHHHHCC------CCEEEEECCHHHHHHHHH--------CCCeEEEcCCCCHHHHHhcCccc
Confidence 4799999999999999999998754 789999999998877642 46789999999999999999999
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCccEEEEecCCCCHHHHHHcCCCeeeEeccHHHHHHHHHHHhcCCc
Q 004585 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPG 540 (744)
Q Consensus 461 A~aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d~e~~~~lk~~Gad~Ve~Vis~el~a~lLaq~~~~Pg 540 (744)
||++++++++ |.+|..++.++|+.+++ .+|+||++++++.+.++.+|+|.| +.+++..++.+++.+..|+
T Consensus 482 a~~viv~~~~------~~~~~~iv~~~~~~~~~--~~iiar~~~~~~~~~l~~~Gad~v--v~p~~~~a~~i~~~l~~~~ 551 (558)
T PRK10669 482 ARWLLLTIPN------GYEAGEIVASAREKRPD--IEIIARAHYDDEVAYITERGANQV--VMGEREIARTMLELLETPP 551 (558)
T ss_pred cCEEEEEcCC------hHHHHHHHHHHHHHCCC--CeEEEEECCHHHHHHHHHcCCCEE--EChHHHHHHHHHHHhcCCC
Confidence 9999999853 77888788888988874 589999999999999999999985 7777788999999999999
Q ss_pred HHHHH
Q 004585 541 LAQIW 545 (744)
Q Consensus 541 ~~~Vl 545 (744)
+.++.
T Consensus 552 ~~~~~ 556 (558)
T PRK10669 552 AGEVV 556 (558)
T ss_pred ccccc
Confidence 98764
No 9
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=99.68 E-value=2.8e-15 Score=175.75 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=113.0
Q ss_pred ecCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCccc
Q 004585 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (744)
Q Consensus 381 ~k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (744)
.++||||||+|+.|..+++.|...+ ++|+++|.|++.++...+ .+..++.||+++++.|++||+++
T Consensus 399 ~~~~vII~G~Gr~G~~va~~L~~~g------~~vvvID~d~~~v~~~~~--------~g~~v~~GDat~~~~L~~agi~~ 464 (601)
T PRK03659 399 DKPQVIIVGFGRFGQVIGRLLMANK------MRITVLERDISAVNLMRK--------YGYKVYYGDATQLELLRAAGAEK 464 (601)
T ss_pred ccCCEEEecCchHHHHHHHHHHhCC------CCEEEEECCHHHHHHHHh--------CCCeEEEeeCCCHHHHHhcCCcc
Confidence 4789999999999999999998654 789999999998887632 35678999999999999999999
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCccEEEEecCCCCHHHHHHcCCCeeeEeccHHHH-HHHHHHHhc
Q 004585 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVI-GRLMIQCAL 537 (744)
Q Consensus 461 A~aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d~e~~~~lk~~Gad~Ve~Vis~el~-a~lLaq~~~ 537 (744)
|+++|++++ +|+.|+.+|..+|+++|+ .+|+||++|+++.+.++.+|+|. |+++.+. +..+++.++
T Consensus 465 A~~vv~~~~------d~~~n~~i~~~~r~~~p~--~~IiaRa~~~~~~~~L~~~Ga~~---vv~e~~es~l~l~~~~L 531 (601)
T PRK03659 465 AEAIVITCN------EPEDTMKIVELCQQHFPH--LHILARARGRVEAHELLQAGVTQ---FSRETFSSALELGRKTL 531 (601)
T ss_pred CCEEEEEeC------CHHHHHHHHHHHHHHCCC--CeEEEEeCCHHHHHHHHhCCCCE---EEccHHHHHHHHHHHHH
Confidence 999999996 489999999999999985 58999999999999999999997 4455443 555655443
No 10
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=99.64 E-value=1.3e-14 Score=170.47 Aligned_cols=132 Identities=14% Similarity=0.097 Sum_probs=111.6
Q ss_pred ecCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCccc
Q 004585 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (744)
Q Consensus 381 ~k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (744)
.++||||||+|+.|+.+++.|.+.+ ..++++|.|++.++...+ .+..+++||+++++.|+++|+++
T Consensus 399 ~~~~vII~G~Gr~G~~va~~L~~~g------~~vvvID~d~~~v~~~~~--------~g~~v~~GDat~~~~L~~agi~~ 464 (621)
T PRK03562 399 QQPRVIIAGFGRFGQIVGRLLLSSG------VKMTVLDHDPDHIETLRK--------FGMKVFYGDATRMDLLESAGAAK 464 (621)
T ss_pred ccCcEEEEecChHHHHHHHHHHhCC------CCEEEEECCHHHHHHHHh--------cCCeEEEEeCCCHHHHHhcCCCc
Confidence 4699999999999999999998654 689999999999887632 35678999999999999999999
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCccEEEEecCCCCHHHHHHcCCCeeeEeccHHH-HHHHHHHHhc
Q 004585 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDV-IGRLMIQCAL 537 (744)
Q Consensus 461 A~aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d~e~~~~lk~~Gad~Ve~Vis~el-~a~lLaq~~~ 537 (744)
|+++|++++ +|+.|+.++..+|+++|+ .+|+||.+|+++.+.++.+|+|.+ ..+.. .+..+++.+.
T Consensus 465 A~~vvv~~~------d~~~n~~i~~~ar~~~p~--~~iiaRa~d~~~~~~L~~~Gad~v---~~e~~e~sl~l~~~~L 531 (621)
T PRK03562 465 AEVLINAID------DPQTSLQLVELVKEHFPH--LQIIARARDVDHYIRLRQAGVEKP---ERETFEGALKSGRLVL 531 (621)
T ss_pred CCEEEEEeC------CHHHHHHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHCCCCEE---ehhhHhHHHHHHHHHH
Confidence 999999995 489999999999999985 479999999999999999999974 23332 3555555443
No 11
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=99.64 E-value=1.8e-15 Score=139.52 Aligned_cols=113 Identities=21% Similarity=0.338 Sum_probs=99.2
Q ss_pred EEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCcccccEE
Q 004585 385 ILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARAI 464 (744)
Q Consensus 385 III~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~aV 464 (744)
|||||||+.|..++++|.+.+ ..|+++|.|++.++.+.+ .++.++.||++++++|+++++++|+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~------~~vvvid~d~~~~~~~~~--------~~~~~i~gd~~~~~~l~~a~i~~a~~v 66 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG------IDVVVIDRDPERVEELRE--------EGVEVIYGDATDPEVLERAGIEKADAV 66 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT------SEEEEEESSHHHHHHHHH--------TTSEEEES-TTSHHHHHHTTGGCESEE
T ss_pred eEEEcCCHHHHHHHHHHHhCC------CEEEEEECCcHHHHHHHh--------cccccccccchhhhHHhhcCccccCEE
Confidence 799999999999999999743 589999999998887754 247789999999999999999999999
Q ss_pred EEecCCCCCCcchHHHHHHHHHHhhhcCCCCccEEEEecCCCCHHHHHHcCCCee
Q 004585 465 IVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELI 519 (744)
Q Consensus 465 Iiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d~e~~~~lk~~Gad~V 519 (744)
|++++ +|+.|+.+|+.+|++++. .++++++.++++.+.++.+|+|.|
T Consensus 67 v~~~~------~d~~n~~~~~~~r~~~~~--~~ii~~~~~~~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 67 VILTD------DDEENLLIALLARELNPD--IRIIARVNDPENAELLRQAGADHV 113 (116)
T ss_dssp EEESS------SHHHHHHHHHHHHHHTTT--SEEEEEESSHHHHHHHHHTT-SEE
T ss_pred EEccC------CHHHHHHHHHHHHHHCCC--CeEEEEECCHHHHHHHHHCCcCEE
Confidence 99995 599999999999999985 589999999999999999999974
No 12
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.12 E-value=1.8e-10 Score=99.67 Aligned_cols=72 Identities=21% Similarity=0.450 Sum_probs=58.8
Q ss_pred HHHHHHHHhhhhhh---ccCCCHHHHHHHHHHhhhcCCCCCC-CCCccChhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004585 295 TIFLIIFGGLALYA---VSDSSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAIS 366 (744)
Q Consensus 295 ~l~lil~g~l~~~~---ie~~s~~dA~y~~~~tltTvGygd~-~~t~~gRi~~v~lil~Gi~i~a~lig~It~~i~ 366 (744)
++.++..|+.+++. .|++++.||+||+++|+||+||||. |.+..||+++++.++.|+.+++++++.+++.+.
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 3 LLLVLAFGAIFFYISEGSEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp HHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeeHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445666666666 4678999999999999999999998 788899999999999999999999999888765
No 13
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=98.93 E-value=7.2e-10 Score=122.91 Aligned_cols=80 Identities=21% Similarity=0.345 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhcc--C----CCHHHHHHHHHHhhhcCCCCCC-CCCccChhhhhHHHHHHHHHHHHHHHHH
Q 004585 289 LALLFATIFLIIFGGLALYAVS--D----SSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLV 361 (744)
Q Consensus 289 l~L~~~~l~lil~g~l~~~~ie--~----~s~~dA~y~~~~tltTvGygd~-~~t~~gRi~~v~lil~Gi~i~a~lig~I 361 (744)
+.+++++++++++++++|+.-- + .|..-++||+++|||||||||. |.|+.|++++..-+++|++++|+-|.+|
T Consensus 347 lLllfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiI 426 (477)
T KOG3713|consen 347 LLLLFLAVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITII 426 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhH
Confidence 4455667788888888886542 1 5788999999999999999998 8999999999999999999999999998
Q ss_pred HHHHHHH
Q 004585 362 SDAISEK 368 (744)
Q Consensus 362 t~~i~~~ 368 (744)
.+-|...
T Consensus 427 v~nF~~~ 433 (477)
T KOG3713|consen 427 VNNFSMY 433 (477)
T ss_pred hhhHHHH
Confidence 8877765
No 14
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=98.86 E-value=5.6e-09 Score=96.16 Aligned_cols=80 Identities=20% Similarity=0.293 Sum_probs=67.6
Q ss_pred EEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCCcce
Q 004585 645 ILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFDS 724 (744)
Q Consensus 645 ILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~~~Da 724 (744)
|+|||||+.|..+++.|.+. +..+++++. ++++++.+.+.| .. +++||++|++.|++++++++|+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~---~~~vvvid~--d~~~~~~~~~~~--------~~--~i~gd~~~~~~l~~a~i~~a~~ 65 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG---GIDVVVIDR--DPERVEELREEG--------VE--VIYGDATDPEVLERAGIEKADA 65 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT---TSEEEEEES--SHHHHHHHHHTT--------SE--EEES-TTSHHHHHHTTGGCESE
T ss_pred eEEEcCCHHHHHHHHHHHhC---CCEEEEEEC--CcHHHHHHHhcc--------cc--cccccchhhhHHhhcCccccCE
Confidence 68999999999999999873 679999997 458888887632 33 4889999999999999999999
Q ss_pred EEEec--Cchhhhhhhc
Q 004585 725 MSHWK--TRLCILTHVL 739 (744)
Q Consensus 725 vIilT--de~ni~t~~~ 739 (744)
++++| |+.|+.++.+
T Consensus 66 vv~~~~~d~~n~~~~~~ 82 (116)
T PF02254_consen 66 VVILTDDDEENLLIALL 82 (116)
T ss_dssp EEEESSSHHHHHHHHHH
T ss_pred EEEccCCHHHHHHHHHH
Confidence 99999 8999988765
No 15
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=98.85 E-value=5.5e-08 Score=96.22 Aligned_cols=142 Identities=21% Similarity=0.261 Sum_probs=116.1
Q ss_pred eeecCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCc
Q 004585 379 VIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (744)
Q Consensus 379 v~~k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI 458 (744)
....+|++|||+|..+..+.+.|.... ..+++++.+++.++.... .++.++.||+++.+.|.++++
T Consensus 18 ~~l~~~~ii~g~~~~g~~~~~~l~~~~------~~~~vi~~~~~~~~~~~~--------~~~~~~~gd~~~~~~l~~a~~ 83 (212)
T COG1226 18 VRLKRHVIIVGFGRVGQIVARALLASG------IPVVVIDSDEDRVELLRE--------LGLLVVLGDATREEVLEAAGI 83 (212)
T ss_pred ccCCCCEEEEcCChHHHHHHHHHHHCC------CCEEEEECCHHHHHHHHH--------CCCcEEEecCCCHHHHHhcCh
Confidence 467899999999999999999998654 478999999877665532 356789999999999999999
Q ss_pred ccccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCccEEEEecC-CCCHHHHHHcCCCeeeEeccHHHHHHHHHHHhc
Q 004585 459 SKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSD-LDNEPLVKLVGGELIETVVAHDVIGRLMIQCAL 537 (744)
Q Consensus 459 ~~A~aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d-~e~~~~lk~~Gad~Ve~Vis~el~a~lLaq~~~ 537 (744)
+.|++++++.. ++..|+.++..++.++|.. +++++..+ ..+...+...|++.+ +......+..++..+.
T Consensus 84 ~~a~~vi~~~~------~~~~~~~~~~~~~~~~p~~--~i~~~~~~~~~~~~~l~~~G~~~v--i~~~~~~~~~~~~~~~ 153 (212)
T COG1226 84 ERARAVIVTLS------DDATNVFIVLLARAINPEL--EILARARDLDEAVETLTTVGADEV--VPPTFESALLLARAAL 153 (212)
T ss_pred hheeEEEEecC------CHHHHHHHHHHHHHHCCCC--EEEEEeccchHHHHHHHHcCCCee--ecHHHHHHHHHHHHHh
Confidence 99999999995 4889999999999999964 59999999 666778999999974 5555566777777776
Q ss_pred CCcHHHH
Q 004585 538 QPGLAQI 544 (744)
Q Consensus 538 ~Pg~~~V 544 (744)
.+.....
T Consensus 154 ~~~~~~~ 160 (212)
T COG1226 154 VGLGGDS 160 (212)
T ss_pred cccCCch
Confidence 6654443
No 16
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=98.75 E-value=2.5e-08 Score=103.40 Aligned_cols=83 Identities=19% Similarity=0.239 Sum_probs=71.0
Q ss_pred ceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHH-hhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCC
Q 004585 643 EKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKK-LTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (744)
Q Consensus 643 ~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~-l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~~ 721 (744)
.+++|+|.|+.|..+++.|.+ .|.+|.+|+. +++++++ +++ ....+.++||++|++.|+++|+++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~---~g~~Vv~Id~--d~~~~~~~~~~---------~~~~~~v~gd~t~~~~L~~agi~~ 66 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSE---EGHNVVLIDR--DEERVEEFLAD---------ELDTHVVIGDATDEDVLEEAGIDD 66 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHh---CCCceEEEEc--CHHHHHHHhhh---------hcceEEEEecCCCHHHHHhcCCCc
Confidence 379999999999999999987 4899999997 4688887 432 233456899999999999999999
Q ss_pred cceEEEec--Cchhhhhhhc
Q 004585 722 FDSMSHWK--TRLCILTHVL 739 (744)
Q Consensus 722 ~DavIilT--de~ni~t~~~ 739 (744)
||++|++| |+.|++.+.+
T Consensus 67 aD~vva~t~~d~~N~i~~~l 86 (225)
T COG0569 67 ADAVVAATGNDEVNSVLALL 86 (225)
T ss_pred CCEEEEeeCCCHHHHHHHHH
Confidence 99999999 8999988764
No 17
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.66 E-value=2.9e-08 Score=110.76 Aligned_cols=109 Identities=18% Similarity=0.269 Sum_probs=77.6
Q ss_pred hhcccccCCCCChhHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHhhhhhhccC-----------CCHHHHHHHHHHh
Q 004585 256 SKRTKKNKEEVPLKKRVAYSVDVCFSVYPYAKLLALLFATIFLIIFGGLALYAVSD-----------SSFAEALWLSWTF 324 (744)
Q Consensus 256 l~~~~~~~~~v~l~~rl~y~ld~~ls~~~~~~~l~L~~~~l~lil~g~l~~~~ie~-----------~s~~dA~y~~~~t 324 (744)
++|-.++.++.+-|+-|...+ +. +.+ .++....+.++.+++.+.+.|..|. .++.||+||.++|
T Consensus 206 ILRmlr~DRrggTWKLLGSvV--~a--H~~-ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~IT 280 (654)
T KOG1419|consen 206 ILRMLRMDRRGGTWKLLGSVV--YA--HSK-ELITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVIT 280 (654)
T ss_pred HHHHHHhhccCchhhhhhhhh--hh--hHH-HHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhhee
Confidence 456667777777775554433 11 122 2344444455555555666666653 4799999999999
Q ss_pred hhcCCCCCC-CCCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004585 325 VADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEKV 369 (744)
Q Consensus 325 ltTvGygd~-~~t~~gRi~~v~lil~Gi~i~a~lig~It~~i~~~l 369 (744)
+||+||||. |.|+.||+++..+.++|+.+|+.--|++...|.-++
T Consensus 281 ltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKV 326 (654)
T KOG1419|consen 281 LTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKV 326 (654)
T ss_pred EEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhh
Confidence 999999998 899999999999999999999988777766655444
No 18
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=98.52 E-value=1e-08 Score=109.09 Aligned_cols=78 Identities=24% Similarity=0.408 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhccC------CCHHHHHHHHHHhhhcCCCCCC-CCCccChhhhhHHHHHHHHHHHHHHHHH
Q 004585 289 LALLFATIFLIIFGGLALYAVSD------SSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLV 361 (744)
Q Consensus 289 l~L~~~~l~lil~g~l~~~~ie~------~s~~dA~y~~~~tltTvGygd~-~~t~~gRi~~v~lil~Gi~i~a~lig~I 361 (744)
++++++.+.+|++++..|+.-.+ .|..|||||+++|+|||||||. |.|.+|+++.-+..++|++.+|.-+.+|
T Consensus 363 LLIFFlfIgviLFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVI 442 (507)
T KOG1545|consen 363 LLIFFLFIGVILFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVI 442 (507)
T ss_pred HHHHHHHHHHHHHhceeeeeecCCCccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEE
Confidence 34445566778887777765422 5789999999999999999998 8999999999999999999888877776
Q ss_pred HHHHH
Q 004585 362 SDAIS 366 (744)
Q Consensus 362 t~~i~ 366 (744)
.+-+.
T Consensus 443 VsNFn 447 (507)
T KOG1545|consen 443 VSNFN 447 (507)
T ss_pred Eeccc
Confidence 65443
No 19
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.47 E-value=4.3e-07 Score=110.99 Aligned_cols=51 Identities=20% Similarity=0.151 Sum_probs=47.5
Q ss_pred HHHHHHHhhhcCCCCCC-CCCccChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004585 317 ALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISE 367 (744)
Q Consensus 317 A~y~~~~tltTvGygd~-~~t~~gRi~~v~lil~Gi~i~a~lig~It~~i~~ 367 (744)
|+||+++|+||+||||. |.+..+|+|++++|++|+++|++++|.+++.+.+
T Consensus 254 slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~ 305 (823)
T PLN03192 254 AIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 305 (823)
T ss_pred HHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999998 7888999999999999999999999999887654
No 20
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=98.45 E-value=3.8e-07 Score=107.86 Aligned_cols=83 Identities=16% Similarity=0.116 Sum_probs=71.2
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCC
Q 004585 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (744)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~~ 721 (744)
.++|+|||+|+.|..+++.|.+ .|.++++||.+ ++|++.+.+. +.. +++||++|++.|+++|+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~---~g~~vvvID~d--~~~v~~~~~~--------g~~--v~~GDat~~~~L~~agi~~ 464 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS---SGVKMTVLDHD--PDHIETLRKF--------GMK--VFYGDATRMDLLESAGAAK 464 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh---CCCCEEEEECC--HHHHHHHHhc--------CCe--EEEEeCCCHHHHHhcCCCc
Confidence 4689999999999999999987 48899999974 5899988753 333 4889999999999999999
Q ss_pred cceEEEec--Cchhhhhhhc
Q 004585 722 FDSMSHWK--TRLCILTHVL 739 (744)
Q Consensus 722 ~DavIilT--de~ni~t~~~ 739 (744)
+|.+|+++ |+.|+.++.+
T Consensus 465 A~~vvv~~~d~~~n~~i~~~ 484 (621)
T PRK03562 465 AEVLINAIDDPQTSLQLVEL 484 (621)
T ss_pred CCEEEEEeCCHHHHHHHHHH
Confidence 99999999 6888877543
No 21
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.40 E-value=5.8e-07 Score=100.53 Aligned_cols=81 Identities=10% Similarity=0.096 Sum_probs=65.3
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCC
Q 004585 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (744)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~~ 721 (744)
.++++|||||+.|..++++|.+. |.++++|+++. . ++... ++.. +++||++|++.|+++|+++
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~---g~~vvVId~d~--~-~~~~~---------~g~~--vI~GD~td~e~L~~AgI~~ 302 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQR---GQAVTVIVPLG--L-EHRLP---------DDAD--LIPGDSSDSAVLKKAGAAR 302 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHC---CCCEEEEECch--h-hhhcc---------CCCc--EEEeCCCCHHHHHhcCccc
Confidence 46899999999999999999763 78999999642 1 11111 2333 4899999999999999999
Q ss_pred cceEEEec--Cchhhhhhhc
Q 004585 722 FDSMSHWK--TRLCILTHVL 739 (744)
Q Consensus 722 ~DavIilT--de~ni~t~~~ 739 (744)
|+++|+++ |+.|+++++.
T Consensus 303 A~aVI~~t~dD~~Nl~ivL~ 322 (393)
T PRK10537 303 ARAILALRDNDADNAFVVLA 322 (393)
T ss_pred CCEEEEcCCChHHHHHHHHH
Confidence 99999999 7889988764
No 22
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=98.38 E-value=5.4e-07 Score=106.33 Aligned_cols=82 Identities=12% Similarity=-0.006 Sum_probs=69.7
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCC
Q 004585 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (744)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~~ 721 (744)
..+|+|||+|+.|..+++.|.+. |.++++||.+ +++++.+.+. +.. +++||++|++.|+++|+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~---g~~vvvID~d--~~~v~~~~~~--------g~~--v~~GDat~~~~L~~agi~~ 464 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMAN---KMRITVLERD--ISAVNLMRKY--------GYK--VYYGDATQLELLRAAGAEK 464 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhC---CCCEEEEECC--HHHHHHHHhC--------CCe--EEEeeCCCHHHHHhcCCcc
Confidence 45899999999999999999864 8899999975 5888888753 233 4889999999999999999
Q ss_pred cceEEEec--Cchhhhhhh
Q 004585 722 FDSMSHWK--TRLCILTHV 738 (744)
Q Consensus 722 ~DavIilT--de~ni~t~~ 738 (744)
+|++|+++ |+.|+.+..
T Consensus 465 A~~vv~~~~d~~~n~~i~~ 483 (601)
T PRK03659 465 AEAIVITCNEPEDTMKIVE 483 (601)
T ss_pred CCEEEEEeCCHHHHHHHHH
Confidence 99999999 677866644
No 23
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=98.27 E-value=2.1e-06 Score=100.53 Aligned_cols=78 Identities=18% Similarity=0.107 Sum_probs=65.7
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~ 720 (744)
..++++|||+|+.|..+++.|.+. |.++.+||. |+++++.+.+. +.. +++||++|++.|++++++
T Consensus 416 ~~~hiiI~G~G~~G~~la~~L~~~---g~~vvvId~--d~~~~~~~~~~--------g~~--~i~GD~~~~~~L~~a~i~ 480 (558)
T PRK10669 416 ICNHALLVGYGRVGSLLGEKLLAA---GIPLVVIET--SRTRVDELRER--------GIR--AVLGNAANEEIMQLAHLD 480 (558)
T ss_pred cCCCEEEECCChHHHHHHHHHHHC---CCCEEEEEC--CHHHHHHHHHC--------CCe--EEEcCCCCHHHHHhcCcc
Confidence 357999999999999999999864 889999997 46888888752 333 488999999999999999
Q ss_pred CcceEEEec--Cchh
Q 004585 721 TFDSMSHWK--TRLC 733 (744)
Q Consensus 721 ~~DavIilT--de~n 733 (744)
++|++++++ |+.|
T Consensus 481 ~a~~viv~~~~~~~~ 495 (558)
T PRK10669 481 CARWLLLTIPNGYEA 495 (558)
T ss_pred ccCEEEEEcCChHHH
Confidence 999998887 4444
No 24
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=98.23 E-value=5.1e-06 Score=88.16 Aligned_cols=81 Identities=17% Similarity=0.164 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHhhhcCCCCCC-C-CC------c-cChhhhhHHHHHHHHHHHHH
Q 004585 287 KLLALLFATIFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHAD-R-VG------T-GPRIVSVSISSGGMLIFAMM 357 (744)
Q Consensus 287 ~~l~L~~~~l~lil~g~l~~~~ie~~s~~dA~y~~~~tltTvGygd~-~-~t------~-~gRi~~v~lil~Gi~i~a~l 357 (744)
.++.++.+.++++..|+..|..+|+|+++||+|+.++|+||+||||. + +. . .=+.++++.|++|+.+++.+
T Consensus 160 l~~i~~~~~~~~i~~gaa~fs~~E~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~ 239 (350)
T KOG4404|consen 160 LVLILFTACILLICCGAAMFSSVEGWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYAL 239 (350)
T ss_pred HHHHHHHHHHHHHHhhHHHhhcccCcchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHH
Confidence 34666666778888899999999999999999999999999999996 2 21 1 23567999999999999888
Q ss_pred HHHHHHHHHH
Q 004585 358 LGLVSDAISE 367 (744)
Q Consensus 358 ig~It~~i~~ 367 (744)
+.+++-.+..
T Consensus 240 ~NllvLrf~t 249 (350)
T KOG4404|consen 240 LNLLVLRFMT 249 (350)
T ss_pred HHHHHHHHHH
Confidence 8877655444
No 25
>COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism]
Probab=98.21 E-value=3e-06 Score=82.20 Aligned_cols=65 Identities=23% Similarity=0.239 Sum_probs=57.2
Q ss_pred cceeeccCCccCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 004585 554 AEFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (744)
Q Consensus 554 ~ei~v~~~p~lvG~tf~El~~~~-~~~iVIGI~r~~~~g~~~lnP~~dtvI~~GD~LiVIa~~~~~~~~ 621 (744)
-.+++...++++|++++|+..+. .+++||||.| +++.+++|.+.++|++||.|||+|+.....++
T Consensus 88 ~~~~i~~~s~~~GksiGdl~irq~TGaTIIAI~r---~~e~I~SPgPy~vle~gDtlvviG~~~~~~r~ 153 (162)
T COG0490 88 EWFKIEAGSPFIGKTIGDLNIRQNTGATVIAIVR---NEEKILSPGPYTVLEAGDTLVVIGEETGLKRA 153 (162)
T ss_pred eeeeeecCCcccCcchhhcccccccCcEEEEEEe---cCcEecCCCchhhhcCCCEEEEEecchHhHHH
Confidence 35777888899999999999774 6899999998 58899999999999999999999998877654
No 26
>COG3400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.01 E-value=8.5e-05 Score=79.73 Aligned_cols=209 Identities=13% Similarity=0.063 Sum_probs=137.2
Q ss_pred CeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhc-cCcccc
Q 004585 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK-VSVSKA 461 (744)
Q Consensus 383 ~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~r-AgI~~A 461 (744)
+.|+|+|-|..+..+++.++...+ .+....++.++.+..+... .-..+.+..-||++.+.|++ .+-+-.
T Consensus 2 ~~I~iI~dGi~Ak~fLe~v~~~~~---~~~f~~vv~~~qe~~~~~~-------~~e~~~fh~fdaTs~~rl~~~~n~~~~ 71 (471)
T COG3400 2 KKIAIILDGIVAKNFLELVLRHYS---NHNFYIVVVKNQESLIPKN-------YPETFAFHCFDATSSFRLLQVLNDEVS 71 (471)
T ss_pred ceEEEEEecHHHHHHHHHHHHHhc---CceEEEEEeechhhccccc-------CcceEEEEEeCCccHHHHHHHhhhHhh
Confidence 579999999999999998886543 2355666666654433211 12357788889999999876 677778
Q ss_pred cEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCccEEEEecCCCCHHHHHHcCCCeeeEeccHHHHHHHHHHHhcCCcH
Q 004585 462 RAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPGL 541 (744)
Q Consensus 462 ~aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d~e~~~~lk~~Gad~Ve~Vis~el~a~lLaq~~~~Pg~ 541 (744)
+|+|+.-+ -.++..+.-++|..+++...-|+......++-+..+...++- +..++..++.....+ ||+
T Consensus 72 ~Afi~~qd-------~~et~~i~k~lr~~f~n~e~ei~~~~~~l~~Nee~~d~k~~l---id~~~vL~~~F~~~L--p~I 139 (471)
T COG3400 72 DAFIIIQD-------FKETRIIHKILRTHFKNMEVEISVKRDELENNEENKDEKLIL---IDEFEVLANKFISRL--PNI 139 (471)
T ss_pred hhheehhh-------HHHHHHHHHHHHHhccCcEEEEEEEeCCCccchhhcccceee---cchHHHHHHHHHHhc--CCc
Confidence 89999873 356677778888888765444444433233334445555543 444565555444322 233
Q ss_pred HHHHHHH-hc-CCCcceeeccCCccCCCcHHhHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCC
Q 004585 542 AQIWEDI-LG-FENAEFYIKRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTY 619 (744)
Q Consensus 542 ~~Vl~~L-l~-~~g~ei~v~~~p~lvG~tf~El~~~~~~~iVIGI~r~~~~g~~~lnP~~dtvI~~GD~LiVIa~~~~~~ 619 (744)
...-..+ ++ .+-.|+.+...+.++=+.++++.. ..+.+++++| +|+ .+-|..+.+|++||.++|+|++.-+.
T Consensus 140 ~~tp~~iGLgkGEImEI~vp~gSifaYrhi~sI~q--k~~RIvl~YR---N~k-lll~~~slvlqp~D~lLVvG~P~~ln 213 (471)
T COG3400 140 PSTPREIGLGKGEIMEIDVPFGSIFAYRHIGSIRQ--KEYRIVLLYR---NDK-LLLSTKSLVLQPRDILLVVGNPEILN 213 (471)
T ss_pred cccchhcccccceEEEEecCCCchhhhhhhhhhhh--heeEEEEEEE---CCE-EEEeccceEecCCCEEEEeCChHHHH
Confidence 2211110 11 122466666778888888888874 4789999998 465 56689999999999999999986443
No 27
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=97.93 E-value=8e-06 Score=68.66 Aligned_cols=62 Identities=24% Similarity=0.309 Sum_probs=46.2
Q ss_pred ceeeccCCccCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCC
Q 004585 555 EFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYA 620 (744)
Q Consensus 555 ei~v~~~p~lvG~tf~El~~~~-~~~iVIGI~r~~~~g~~~lnP~~dtvI~~GD~LiVIa~~~~~~~ 620 (744)
++.+.+.++++|++++|+.... +++.++||.| ++..+.|.++++|++||.|+++|+.+++.+
T Consensus 3 e~~V~~~s~~~gk~l~el~l~~~~~~~i~~i~R----~~~~~~p~~~~~l~~gD~l~v~g~~~~i~~ 65 (71)
T PF02080_consen 3 EVRVPENSPLVGKTLKELDLPERYGVRIVAIKR----GGEIIIPDGDTVLQAGDILIVVGDPEDIER 65 (71)
T ss_dssp EEE--TTBTTTTEBHHHCTHHCHHTEEEEEEEE----TEEEES--TT-BE-TTEEEEEEEEHHHHHH
T ss_pred EEEECCCCCCCCCCHHHCCCCccCCEEEEEEEE----CCEEECCCCCCEECCCCEEEEEECHHHHHH
Confidence 4566677899999999976543 3899999987 367889999999999999999999876543
No 28
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=97.90 E-value=1.2e-06 Score=94.01 Aligned_cols=94 Identities=21% Similarity=0.350 Sum_probs=73.2
Q ss_pred HHHHhhhhhhccchhHHHHHHHHHHHHHHHHHhhhhhhccC------CCHHHHHHHHHHhhhcCCCCCC-CCCccChhhh
Q 004585 271 RVAYSVDVCFSVYPYAKLLALLFATIFLIIFGGLALYAVSD------SSFAEALWLSWTFVADSGNHAD-RVGTGPRIVS 343 (744)
Q Consensus 271 rl~y~ld~~ls~~~~~~~l~L~~~~l~lil~g~l~~~~ie~------~s~~dA~y~~~~tltTvGygd~-~~t~~gRi~~ 343 (744)
.+.|-|.-.-+..+ ++++.++.++|+++++.||.-.+ .+...|||++++|+||.||||. |.|..|+||+
T Consensus 312 ILGYTLKSCASELG----FLlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfG 387 (632)
T KOG4390|consen 312 ILGYTLKSCASELG----FLLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFG 387 (632)
T ss_pred hhhhhHHHHHHHHh----HHHHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHHHHhh
Confidence 56777766655554 34555666777888877765432 5789999999999999999998 6888999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 004585 344 VSISSGGMLIFAMMLGLVSDAISEK 368 (744)
Q Consensus 344 v~lil~Gi~i~a~lig~It~~i~~~ 368 (744)
-+..+.|+++++.-+.+|.+-+...
T Consensus 388 siCSLSGVLVIALPVPvIVSNFSRI 412 (632)
T KOG4390|consen 388 SICSLSGVLVIALPVPVIVSNFSRI 412 (632)
T ss_pred hhhcccceEEEeccccEEEechhHH
Confidence 9999999999888887777666553
No 29
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.80 E-value=7e-05 Score=82.18 Aligned_cols=104 Identities=21% Similarity=0.216 Sum_probs=66.1
Q ss_pred chhHHHHHHHHH-HHHHHHHHhhhhhhc-------cC--------------CCHHHHHHHHHHhhhcCCCCCC---CCCc
Q 004585 283 YPYAKLLALLFA-TIFLIIFGGLALYAV-------SD--------------SSFAEALWLSWTFVADSGNHAD---RVGT 337 (744)
Q Consensus 283 ~~~~~~l~L~~~-~l~lil~g~l~~~~i-------e~--------------~s~~dA~y~~~~tltTvGygd~---~~t~ 337 (744)
.+|+.++.++++ .++..++.+++||++ +. .+|.+|||+++.|.||+|||.. +...
T Consensus 32 ~~W~~~l~~f~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~Cv~~~~~f~~aF~FSveT~tTIGYG~~~~~~~c~ 111 (336)
T PF01007_consen 32 MSWRWFLLLFVLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTPCVSNVNSFTSAFLFSVETQTTIGYGSRYPTPECP 111 (336)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-TSECT-TTHHHHHHHHHHHHTT---SSSEB-CSHH
T ss_pred CCeeeeeehhHHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCCceecccchhhheeEEEEEEEEeccCCcccCCCcc
Confidence 457765555443 445555556666543 11 5899999999999999999985 3445
Q ss_pred cChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccceeecCeEEEEcc
Q 004585 338 GPRIVSVSISSGGMLIFAMMLGLVSDAISEKVDSLRKGKSEVIEKNHILILGW 390 (744)
Q Consensus 338 ~gRi~~v~lil~Gi~i~a~lig~It~~i~~~l~~lr~G~~~v~~k~HIII~G~ 390 (744)
.+-++.++-.++|+++.++++|++..-+.+ =+++...+...++.||+-.
T Consensus 112 ~a~~l~~~q~~~g~l~~a~~~Glvfar~sr----P~~R~~tI~FS~~AVI~~~ 160 (336)
T PF01007_consen 112 YAIFLVTIQSLVGLLLDAFMTGLVFARFSR----PKKRASTILFSKKAVIAPR 160 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----CCCGGGSEEE-SSEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cccccceEEEEeeeEEeec
Confidence 667777788899999999998887654332 2222234567778877754
No 30
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.69 E-value=0.0022 Score=71.34 Aligned_cols=76 Identities=16% Similarity=0.161 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHhhhhhhccC--------CCHHHHHHHHHHhhhcCCCCCC-CCCccChhhhhHHHHHHHHHHHHHHHH
Q 004585 290 ALLFATIFLIIFGGLALYAVSD--------SSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGL 360 (744)
Q Consensus 290 ~L~~~~l~lil~g~l~~~~ie~--------~s~~dA~y~~~~tltTvGygd~-~~t~~gRi~~v~lil~Gi~i~a~lig~ 360 (744)
.|++.++.++++.++.+.+-|. .++.++.|+...|+.++||||. |.|.-||.++++.-++|.++.++++++
T Consensus 256 vL~vftl~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAv 335 (489)
T KOG3684|consen 256 VLLVFTLSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAV 335 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHH
Confidence 3445556666666666666542 3499999999999999999998 789999999999999999999988888
Q ss_pred HHHHH
Q 004585 361 VSDAI 365 (744)
Q Consensus 361 It~~i 365 (744)
|+-.+
T Consensus 336 isRKL 340 (489)
T KOG3684|consen 336 IARKL 340 (489)
T ss_pred HHHHH
Confidence 76443
No 31
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.56 E-value=9.7e-05 Score=72.59 Aligned_cols=76 Identities=9% Similarity=0.044 Sum_probs=59.4
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~ 720 (744)
..++|+|+|||++|...++.|.++ |.+|++|++ +.++++.+ +..+. .+.+.+++++++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~---ga~V~VIsp----~~~~~l~~-------l~~i~--------~~~~~~~~~dl~ 69 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT---GAFVTVVSP----EICKEMKE-------LPYIT--------WKQKTFSNDDIK 69 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC---CCEEEEEcC----ccCHHHHh-------ccCcE--------EEecccChhcCC
Confidence 357899999999999999998764 899999974 45555543 22222 246788888999
Q ss_pred CcceEEEec--Cchhhhhhh
Q 004585 721 TFDSMSHWK--TRLCILTHV 738 (744)
Q Consensus 721 ~~DavIilT--de~ni~t~~ 738 (744)
.+|.+++.| +++|...+.
T Consensus 70 ~a~lViaaT~d~e~N~~i~~ 89 (157)
T PRK06719 70 DAHLIYAATNQHAVNMMVKQ 89 (157)
T ss_pred CceEEEECCCCHHHHHHHHH
Confidence 999999999 899987663
No 32
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.47 E-value=0.00013 Score=81.15 Aligned_cols=63 Identities=17% Similarity=0.258 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHHhhhcCCCCCC-CCCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 004585 311 DSSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEKVDSLR 373 (744)
Q Consensus 311 ~~s~~dA~y~~~~tltTvGygd~-~~t~~gRi~~v~lil~Gi~i~a~lig~It~~i~~~l~~lr 373 (744)
.|+|.+|+|++++++||+|||+. |.|..||+++++..++|+-++.+.++-+...+.+.+..+.
T Consensus 113 ~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~~ 176 (433)
T KOG1418|consen 113 QWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRKLY 176 (433)
T ss_pred ceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999998 7899999999999999999998888888777777655533
No 33
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.36 E-value=0.00021 Score=84.80 Aligned_cols=55 Identities=22% Similarity=0.359 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhhhcCCCCCCC-CCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004585 314 FAEALWLSWTFVADSGNHADR-VGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEK 368 (744)
Q Consensus 314 ~~dA~y~~~~tltTvGygd~~-~t~~gRi~~v~lil~Gi~i~a~lig~It~~i~~~ 368 (744)
+.-|+||+++|+||+|||+.+ .+....+|++++|++|++++|++||-++..+...
T Consensus 295 Y~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~ 350 (727)
T KOG0498|consen 295 YVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSL 350 (727)
T ss_pred HHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHH
Confidence 467999999999999999984 6778899999999999999999999988777653
No 34
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.28 E-value=4.6e-05 Score=84.74 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhhhhhccCCCHHHHHHHHHHhhhcCCCCCC-CCCccCh--------hhhhHHHHHHHHHHHHHH
Q 004585 293 FATIFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHAD-RVGTGPR--------IVSVSISSGGMLIFAMML 358 (744)
Q Consensus 293 ~~~l~lil~g~l~~~~ie~~s~~dA~y~~~~tltTvGygd~-~~t~~gR--------i~~v~lil~Gi~i~a~li 358 (744)
.++++.+..|+.++...|+++|++|||++++++||+||||. |.+..++ .+..+++++|+..++...
T Consensus 222 ~~~~~~~~~~~~~~~~~e~w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 222 GISLVYLSPGSLLFSLQEQWSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeeEEEecccceeeeceeceeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 33445566678888888999999999999999999999998 6665555 467778888888777655
No 35
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.00023 Score=75.84 Aligned_cols=123 Identities=15% Similarity=0.191 Sum_probs=76.1
Q ss_pred hhhhHHHHHHHHH-HHHHHHHHHhhchHHHhhhhhhcccccCCCCChhHHHHHhhhhhhc-----cchhHHHHHHHHHHH
Q 004585 223 DGRTVALYSVIVT-LLMPFVLYKYLDYLPQIKNFSKRTKKNKEEVPLKKRVAYSVDVCFS-----VYPYAKLLALLFATI 296 (744)
Q Consensus 223 ~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~v~l~~rl~y~ld~~ls-----~~~~~~~l~L~~~~l 296 (744)
+.|.+++++..|+ |++|..++-++..=.+.+ -++++.-+.+++-. ..-+..+...+
T Consensus 6 nvR~l~Livct~tYLLvGAaVFdaLEse~E~~--------------~r~~l~~~~~~~~~kyn~s~~d~r~~er~i---- 67 (350)
T KOG4404|consen 6 NVRTLLLIVCTFTYLLVGAAVFDALESENEAR--------------ERERLERRLANLKRKYNLSEEDYRELERVI---- 67 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCcchHH--------------HHHHHHHHHHHHHHhhCCCHHHHHHHHHHH----
Confidence 4788999999999 999998887665543321 11222222222222 22222222111
Q ss_pred HHHHHHhhhhhhccCCCHHHHHHHHHHhhhcCCCCCC-CCCccChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004585 297 FLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISE 367 (744)
Q Consensus 297 ~lil~g~l~~~~ie~~s~~dA~y~~~~tltTvGygd~-~~t~~gRi~~v~lil~Gi~i~a~lig~It~~i~~ 367 (744)
+-+.---.-..|.|.-||||+.+.+||+|||-. |.|.+||+|.++..++|+-+--+++..+.+-+..
T Consensus 68 ----~~s~ph~ag~qWkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERlnt 135 (350)
T KOG4404|consen 68 ----LKSEPHKAGPQWKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLNT 135 (350)
T ss_pred ----HhcCccccccccccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHHH
Confidence 111100111358999999999999999999987 7889999999999999866544444444444433
No 36
>PF03493 BK_channel_a: Calcium-activated BK potassium channel alpha subunit; InterPro: IPR003929 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Ca2+-activated K+ channels are a diverse group of channels that are activated by an increase in intracellular Ca2+ concentration. They are found in the majority of nerve cells, where they modulate cell excitability and action potential. Three types of Ca2+-activated K+ channel have been characterised, termed small-conductance (SK), intermediate conductance (IK) and large conductance (BK) respectively []. BK channels (also referred to as maxi-K channels) are widely expressed in the body, being found in glandular tissue, smooth and skeletal muscle, as well as in neural tissues. They have been demonstrated to regulate arteriolar and airway diameter, and also neurotransmitter release. Each channel complex is thought to be composed of 2 types of subunit; the pore-forming (alpha) subunits and smaller accessory (beta) subunits. The alpha subunit of the BK channel was initially thought to share the characteristic 6TM organisation of the voltage-gated K+ channels. However, the molecule is now thought to possess an additional TM domain, with an extracellular N terminus and intracellular C terminus. This C-terminal region contains 4 predominantly hydrophobic domains, which are also thought to lie intracellularly. The extracellular N terminus and the first TM region are required for modulation by the beta subunit. The precise location of the Ca2+-binding site that modulates channel activation remains unknown, but it is thought to lie within the C-terminal hydrophobic domains.; GO: 0015269 calcium-activated potassium channel activity, 0006813 potassium ion transport, 0016020 membrane; PDB: 3NAF_A 3MT5_A 3U6N_E.
Probab=97.18 E-value=0.00098 Score=60.74 Aligned_cols=70 Identities=17% Similarity=0.306 Sum_probs=52.7
Q ss_pred cCCCeeeEeccHHHHHHHHHHHhcCCcHHHHHHHHhcCC--------------------CcceeeccCC-ccCCCcHHhH
Q 004585 514 VGGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGFE--------------------NAEFYIKRWP-QLDDLRFEEV 572 (744)
Q Consensus 514 ~Gad~Ve~Vis~el~a~lLaq~~~~Pg~~~Vl~~Ll~~~--------------------g~ei~v~~~p-~lvG~tf~El 572 (744)
-++|.| |+.+|+...+||+++..||+++++.+|+... ++|+|....| .+.|++|.++
T Consensus 8 ~~~d~v--Ic~~elK~~lLA~sc~~PG~sTLi~NL~~s~~~~~~~~~~~~W~~eY~~G~~~eIy~~~l~~~f~G~~F~~~ 85 (101)
T PF03493_consen 8 KFADQV--ICIEELKLGLLAQSCLCPGFSTLITNLFHSSSGDESQEEPEQWISEYLRGAGNEIYTVKLSSAFVGMTFTEA 85 (101)
T ss_dssp TTT-EE--EEHHHHHHHHHHHHHHSTTHHHHHHHTTS-------SS--SSHHHHHHHHHTBEEEEEE--GGGTTSBHHHH
T ss_pred ccCceE--EEHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCccccccccHHHHHHHHcCCCCEEEEEeCChhhCCCcHHHH
Confidence 345764 8889999999999999999999999999752 1467776665 7999999999
Q ss_pred hhh-C--CCeEEEEEE
Q 004585 573 VIS-F--PDAIPCGIK 585 (744)
Q Consensus 573 ~~~-~--~~~iVIGI~ 585 (744)
... + .+++++||+
T Consensus 86 ~~~~~~~~~viLigIe 101 (101)
T PF03493_consen 86 ARLLYEKFGVILIGIE 101 (101)
T ss_dssp HHHHHHHS--EEEEEE
T ss_pred HHHHHHHcCcEEEEeC
Confidence 875 2 489999984
No 37
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=97.12 E-value=0.0016 Score=73.88 Aligned_cols=55 Identities=20% Similarity=0.339 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhhhcCCCCCC-CCCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004585 314 FAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEK 368 (744)
Q Consensus 314 ~~dA~y~~~~tltTvGygd~-~~t~~gRi~~v~lil~Gi~i~a~lig~It~~i~~~ 368 (744)
+..++||+++.+||+|||.+ +.|...++|++.+|++|-++.+.++|-++..|++.
T Consensus 424 YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM 479 (971)
T KOG0501|consen 424 YISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQM 479 (971)
T ss_pred ehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 67899999999999999998 67889999999999999999999999888776653
No 38
>COG3273 Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.0013 Score=65.21 Aligned_cols=63 Identities=17% Similarity=0.286 Sum_probs=52.4
Q ss_pred eeeccCCccCCCcHHhHhhh-CCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 004585 556 FYIKRWPQLDDLRFEEVVIS-FPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (744)
Q Consensus 556 i~v~~~p~lvG~tf~El~~~-~~~~iVIGI~r~~~~g~~~lnP~~dtvI~~GD~LiVIa~~~~~~~~ 621 (744)
+.+.+.|.++|+|++|+... ..++.||+|+| ++..+++|+.++.|++||.|++-|++.....+
T Consensus 123 v~v~~~S~l~gktLg~l~L~t~tGvrVIAIRR---G~~wi~~Pd~~~~Ir~gDvLIarG~~~g~~~l 186 (204)
T COG3273 123 VRVEKGSELAGKTLGELDLATNTGVRVIAIRR---GERWIYGPDEDTKIREGDVLIARGTDAGVELL 186 (204)
T ss_pred EEecCCCeecccchhhhccccccceEEEEEec---CCccccCCCccceeccCCEEEEecchhhHHHH
Confidence 45567789999999999865 35899999998 45678999999999999999999977665443
No 39
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.85 E-value=0.0046 Score=60.77 Aligned_cols=83 Identities=11% Similarity=0.063 Sum_probs=60.4
Q ss_pred ecCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCccc
Q 004585 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (744)
Q Consensus 381 ~k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (744)
...+++|+|+|+++.+.++.|...+ +.|++++.+ ..+++.+ + ..+.+ +.+.++.+++++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~g------a~V~VIsp~--~~~~l~~-l------~~i~~------~~~~~~~~dl~~ 70 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTG------AFVTVVSPE--ICKEMKE-L------PYITW------KQKTFSNDDIKD 70 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC------CEEEEEcCc--cCHHHHh-c------cCcEE------EecccChhcCCC
Confidence 4568999999999999999998754 567777533 2223211 1 11222 356778888999
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhh
Q 004585 461 ARAIIVLASDENADQSDARALRVVLSLTGV 490 (744)
Q Consensus 461 A~aVIiltdd~~~~~sD~~NI~~~Lsar~l 490 (744)
|+.||+.|+ +|+.|..++..++..
T Consensus 71 a~lViaaT~------d~e~N~~i~~~a~~~ 94 (157)
T PRK06719 71 AHLIYAATN------QHAVNMMVKQAAHDF 94 (157)
T ss_pred ceEEEECCC------CHHHHHHHHHHHHHC
Confidence 999999995 489999999988874
No 40
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.62 E-value=0.0041 Score=63.67 Aligned_cols=77 Identities=10% Similarity=0.094 Sum_probs=54.0
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~ 720 (744)
..++|||+|+|++|...++.|.+. |.+|++|+....++ .+.+.+. -.+.+ .++.+++.++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~---ga~V~VIs~~~~~~-l~~l~~~---------~~i~~------~~~~~~~~~l~ 69 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKY---GAHIVVISPELTEN-LVKLVEE---------GKIRW------KQKEFEPSDIV 69 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCeEEEEcCCCCHH-HHHHHhC---------CCEEE------EecCCChhhcC
Confidence 356999999999999999988764 88999999654332 2233321 11222 23456677789
Q ss_pred CcceEEEec--Cchhhhh
Q 004585 721 TFDSMSHWK--TRLCILT 736 (744)
Q Consensus 721 ~~DavIilT--de~ni~t 736 (744)
.+|.||+.| +++|...
T Consensus 70 ~adlViaaT~d~elN~~i 87 (202)
T PRK06718 70 DAFLVIAATNDPRVNEQV 87 (202)
T ss_pred CceEEEEcCCCHHHHHHH
Confidence 999999999 7778644
No 41
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.42 E-value=0.0065 Score=69.40 Aligned_cols=96 Identities=8% Similarity=0.157 Sum_probs=72.9
Q ss_pred HHHhhhhhhccchhHHHHHHHHHHHHHHHHHhhhhhhc---------------cCCCHHHHHHHHHHhhhcCCCCCCCCC
Q 004585 272 VAYSVDVCFSVYPYAKLLALLFATIFLIIFGGLALYAV---------------SDSSFAEALWLSWTFVADSGNHADRVG 336 (744)
Q Consensus 272 l~y~ld~~ls~~~~~~~l~L~~~~l~lil~g~l~~~~i---------------e~~s~~dA~y~~~~tltTvGygd~~~t 336 (744)
+-..||+.|+..-..++..-+.-++-++=+-+++|||. ++..+.-++||++.|++|+|....|.+
T Consensus 347 ~~~~Le~i~s~~y~~RV~rT~~YmlyilHinacvYY~~SayqglG~~rWVydg~Gn~YiRCyyfa~kt~~tiG~~P~P~~ 426 (815)
T KOG0499|consen 347 FNHHLESIMSKAYIYRVIRTTGYLLYILHINACVYYWASAYQGLGTTRWVYDGEGNEYIRCYYFAVKTLITIGGLPEPQT 426 (815)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHHHhhhHHHHHHHHhhcccccceeEEcCCCCceeeehhhHHHHHHHhcCCCCcch
Confidence 34456777776555555544444555556677777775 246789999999999999999888888
Q ss_pred ccChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004585 337 TGPRIVSVSISSGGMLIFAMMLGLVSDAISE 367 (744)
Q Consensus 337 ~~gRi~~v~lil~Gi~i~a~lig~It~~i~~ 367 (744)
....+|..+--+.|+++|+.++|-+=+++..
T Consensus 427 ~~E~Vf~~~~w~mGVFvFslliGQmRDvi~a 457 (815)
T KOG0499|consen 427 LFEIVFQLLNWFMGVFVFSLLIGQMRDVIGA 457 (815)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888888888899999999999988766654
No 42
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.40 E-value=0.047 Score=62.14 Aligned_cols=231 Identities=17% Similarity=0.220 Sum_probs=129.9
Q ss_pred ecCeEEEEcccccHHHHH------HHHHHhc-ccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHH
Q 004585 381 EKNHILILGWSDKLGSLL------KQLAVAN-KSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADL 453 (744)
Q Consensus 381 ~k~HIII~G~g~~g~~Ll------~eL~~~~-~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L 453 (744)
..+|||||=+++.-..++ --|+..| +.+.-+|+|++-+-+. +++.-+.+ + .-..+.+..|+|.+.++|
T Consensus 732 lnghvvvclfad~dspliglrnlvmplrasnfhyhelkhvvivgsiey--lrrewktl-~--nlpkisilngsplsradl 806 (1103)
T KOG1420|consen 732 LNGHVVVCLFADVDSPLIGLRNLVMPLRASNFHYHELKHVVIVGSIEY--LRREWKTL-H--NLPKISILNGSPLSRADL 806 (1103)
T ss_pred ecCcEEEEEecCCCCchhhhhhheeeccccccchhheeeEEEEccHHH--HHHHHHHH-h--CCCceeecCCCCCchhhh
Confidence 579999999988644333 2233222 1112245555544432 22222211 1 124688999999999999
Q ss_pred hccCcccccEEEEecCCC----CCCcchHHHHHHHHHHhhhcC----------------------------------CCC
Q 004585 454 KKVSVSKARAIIVLASDE----NADQSDARALRVVLSLTGVKE----------------------------------GLR 495 (744)
Q Consensus 454 ~rAgI~~A~aVIiltdd~----~~~~sD~~NI~~~Lsar~l~p----------------------------------~~~ 495 (744)
+.+++.-+|++++++.+. +..-.|.+.|++.+.+|.+.- +.+
T Consensus 807 ravninlcdmcvilsa~vpn~ddttladkeailaslnikamqfddtigvl~~r~q~fd~~ssp~gspi~lq~~g~~~g~n 886 (1103)
T KOG1420|consen 807 RAVNINLCDMCVILSANVPNIDDTTLADKEAILASLNIKAMQFDDTIGVLQARSQGFDPPSSPDGSPIHLQQPGITTGVN 886 (1103)
T ss_pred hhccccccceeEEEecCCCCCCCcccccHHHHHhhccceeeeeccceeeeeccCCCCCCCCCCCCCCeEEecCCcccccC
Confidence 999999999999988762 334568888888888876420 112
Q ss_pred ccEEEEecCCCCHHHHHHcCCCe--eeEe------ccH----HHHHHHHHHHhcCCcHHHHHHHHhcC-----------C
Q 004585 496 GHVVVEMSDLDNEPLVKLVGGEL--IETV------VAH----DVIGRLMIQCALQPGLAQIWEDILGF-----------E 552 (744)
Q Consensus 496 ~~IIArv~d~e~~~~lk~~Gad~--Ve~V------is~----el~a~lLaq~~~~Pg~~~Vl~~Ll~~-----------~ 552 (744)
.++|.++.|..|.+.+.+-.-|. -|.. |-. .+...+|...-.+..+..++..|.+. +
T Consensus 887 vpmitelvndsnvqfldqdddddpdtelyltqpfacgtafavsvldslmsttyfndnaltlirtlvtggatpelelilae 966 (1103)
T KOG1420|consen 887 VPMITELVNDSNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSTTYFNDNALTLIRTLVTGGATPELELILAE 966 (1103)
T ss_pred chhhhhhhccccceecccCCCCCCCceeEecCccccchhhHHHHHHHHhhhceecchHHHHHHHHHhCCCChhhHHHHhc
Confidence 34566665555554443211110 0100 111 11233333333333444444433322 1
Q ss_pred C---------------------cceeeccCC--c-cCCCcHHhHhhh---CCCeEEEEEEEeec---------CCeEEeC
Q 004585 553 N---------------------AEFYIKRWP--Q-LDDLRFEEVVIS---FPDAIPCGIKVAAE---------GGKIILN 596 (744)
Q Consensus 553 g---------------------~ei~v~~~p--~-lvG~tf~El~~~---~~~~iVIGI~r~~~---------~g~~~ln 596 (744)
| .++.+...| . -.|-.++++.-. .++..-+|++|-++ ..-++-|
T Consensus 967 gaglrggystpetlsnrdrcrvaqisl~dgp~a~~g~~g~ygdlf~~alk~ygmlciglyrlrd~~~s~~~s~kryvitn 1046 (1103)
T KOG1420|consen 967 GAGLRGGYSTPETLSNRDRCRVAQISLLDGPFADLGDGGCYGDLFCKALKTYGMLCIGLYRLRDAHLSTSQSTKRYVITN 1046 (1103)
T ss_pred cccccCCCCChhhhccccceeeeeeeeecCchhhhccCCchHHHHHHHHHHhCceeEEEeeeeccccCcchhhceeEecC
Confidence 1 112222223 1 234577887643 25788899987422 2236789
Q ss_pred CCCCceecCCCEEEEEEeCC
Q 004585 597 PDDNYVLKEGDEVLVIAEDD 616 (744)
Q Consensus 597 P~~dtvI~~GD~LiVIa~~~ 616 (744)
|+.+..|.+.|.++++-.=+
T Consensus 1047 pp~ef~l~ptd~vfvlmqfd 1066 (1103)
T KOG1420|consen 1047 PPYEFELVPTDLVFVLMQFD 1066 (1103)
T ss_pred CchhheecccceEEEEEeeC
Confidence 99999999999999987644
No 43
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.09 E-value=0.024 Score=58.17 Aligned_cols=74 Identities=16% Similarity=-0.004 Sum_probs=53.5
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCC
Q 004585 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (744)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~~ 721 (744)
.++++|+|+|+++..-++.|-+. |..|++++.++.++-.+ +.+. .+ +..+.++.... + ++.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~---ga~VtVvsp~~~~~l~~-l~~~-------~~--i~~~~~~~~~~-d-----l~~ 69 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKA---GAQLRVIAEELESELTL-LAEQ-------GG--ITWLARCFDAD-I-----LEG 69 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC---CCEEEEEcCCCCHHHHH-HHHc-------CC--EEEEeCCCCHH-H-----hCC
Confidence 46999999999999999988764 89999999876544333 4431 12 44577887633 3 467
Q ss_pred cceEEEec-Cc-hhh
Q 004585 722 FDSMSHWK-TR-LCI 734 (744)
Q Consensus 722 ~DavIilT-de-~ni 734 (744)
+|.|++.| |+ +|-
T Consensus 70 ~~lVi~at~d~~ln~ 84 (205)
T TIGR01470 70 AFLVIAATDDEELNR 84 (205)
T ss_pred cEEEEECCCCHHHHH
Confidence 99999999 43 664
No 44
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.83 E-value=0.031 Score=54.96 Aligned_cols=84 Identities=15% Similarity=0.162 Sum_probs=67.2
Q ss_pred CCCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCC
Q 004585 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (744)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I 719 (744)
.-..++++||+|+.|..++..|... +..+.+++.+ .++.+.+...| .. .+.||+++.+.|+.+++
T Consensus 19 ~l~~~~ii~g~~~~g~~~~~~l~~~---~~~~~vi~~~--~~~~~~~~~~~--------~~--~~~gd~~~~~~l~~a~~ 83 (212)
T COG1226 19 RLKRHVIIVGFGRVGQIVARALLAS---GIPVVVIDSD--EDRVELLRELG--------LL--VVLGDATREEVLEAAGI 83 (212)
T ss_pred cCCCCEEEEcCChHHHHHHHHHHHC---CCCEEEEECC--HHHHHHHHHCC--------Cc--EEEecCCCHHHHHhcCh
Confidence 3456899999999999999999864 6688888864 46777766532 22 47899999999999999
Q ss_pred CCcceEEEec--Cchhhhhhh
Q 004585 720 ETFDSMSHWK--TRLCILTHV 738 (744)
Q Consensus 720 ~~~DavIilT--de~ni~t~~ 738 (744)
+.++.+++.. +..|+....
T Consensus 84 ~~a~~vi~~~~~~~~~~~~~~ 104 (212)
T COG1226 84 ERARAVIVTLSDDATNVFIVL 104 (212)
T ss_pred hheeEEEEecCCHHHHHHHHH
Confidence 9999999999 566655443
No 45
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.72 E-value=0.031 Score=63.05 Aligned_cols=55 Identities=20% Similarity=0.286 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004585 314 FAEALWLSWTFVADSGNHADRVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEK 368 (744)
Q Consensus 314 ~~dA~y~~~~tltTvGygd~~~t~~gRi~~v~lil~Gi~i~a~lig~It~~i~~~ 368 (744)
+.-++||+..|+||.|--..|.+....+|.++=.++|+++||.++|-+.+.+.+.
T Consensus 184 Y~~S~YWStLTlTTiGe~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnm 238 (536)
T KOG0500|consen 184 YLYSLYWSTLTLTTIGEQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNM 238 (536)
T ss_pred HHHHHHHHhhhhhhccCCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhh
Confidence 3568999999999999888888889999999999999999999999887777664
No 46
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.43 E-value=0.057 Score=55.30 Aligned_cols=84 Identities=12% Similarity=0.145 Sum_probs=58.0
Q ss_pred ecCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCCh-HHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCcc
Q 004585 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (744)
Q Consensus 381 ~k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~-e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~ 459 (744)
...+++|+|.|+.+...++.|...+ ..|++++.+. +++...... ..+.+.. ..++.+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~g------a~V~VIs~~~~~~l~~l~~~-------~~i~~~~------~~~~~~~l~ 69 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYG------AHIVVISPELTENLVKLVEE-------GKIRWKQ------KEFEPSDIV 69 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC------CeEEEEcCCCCHHHHHHHhC-------CCEEEEe------cCCChhhcC
Confidence 3469999999999999999998754 4677776553 334443321 2344322 345566788
Q ss_pred cccEEEEecCCCCCCcchHHHHHHHHHHhh
Q 004585 460 KARAIIVLASDENADQSDARALRVVLSLTG 489 (744)
Q Consensus 460 ~A~aVIiltdd~~~~~sD~~NI~~~Lsar~ 489 (744)
+|+.||+.|+ +++.|..++..++.
T Consensus 70 ~adlViaaT~------d~elN~~i~~~a~~ 93 (202)
T PRK06718 70 DAFLVIAATN------DPRVNEQVKEDLPE 93 (202)
T ss_pred CceEEEEcCC------CHHHHHHHHHHHHh
Confidence 9999999995 48888888776643
No 47
>PRK05326 potassium/proton antiporter; Reviewed
Probab=94.57 E-value=0.044 Score=64.62 Aligned_cols=62 Identities=26% Similarity=0.311 Sum_probs=50.8
Q ss_pred ceeeccCCccCCCcHHhHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 004585 555 EFYIKRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (744)
Q Consensus 555 ei~v~~~p~lvG~tf~El~~~~~~~iVIGI~r~~~~g~~~lnP~~dtvI~~GD~LiVIa~~~~~~~~ 621 (744)
++.+.+.++++|++++|+... .++.++++.| +|+ .+.|+++++|++||++++++++++..+.
T Consensus 418 ~~~V~~~s~~~G~~l~el~lp-~~~~i~~v~R---~g~-~~~p~~~t~L~~GD~l~l~~~~~~l~~l 479 (562)
T PRK05326 418 EYRVPAGSWLVGKALRDLRLP-RGALIALIIR---DGK-LLVPTGSTRLKAGDVLLVLGPERDLPAL 479 (562)
T ss_pred EEEECCCCcccCCCHHHcCCC-CCcEEEEEEE---CCE-EeCCCCCCeECCCCEEEEEECHHHHHHH
Confidence 455666789999999999632 4799999998 455 4799999999999999999998876554
No 48
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=94.26 E-value=0.15 Score=57.91 Aligned_cols=112 Identities=18% Similarity=0.284 Sum_probs=75.7
Q ss_pred CcEEEEEeCCCCHHHHhccCcccccEEEEecCCC---CCCcchHHHHHHHHHHhhhcCCCCccEEE-----------Eec
Q 004585 438 TSVICRSGSPLILADLKKVSVSKARAIIVLASDE---NADQSDARALRVVLSLTGVKEGLRGHVVV-----------EMS 503 (744)
Q Consensus 438 ~~V~~i~Gd~t~~e~L~rAgI~~A~aVIiltdd~---~~~~sD~~NI~~~Lsar~l~p~~~~~IIA-----------rv~ 503 (744)
.+|.+..|...+.++|.|||+..|..|+++-.-. +++.+|-.+|.++.-+..++|.+ +.|. +.+
T Consensus 762 p~vywm~g~v~~ld~llragvs~ae~vvvvke~a~~aee~tadcntii~vq~~~r~fp~l--r~itelt~atnmrf~qf~ 839 (1087)
T KOG3193|consen 762 PDVYWMKGKVGNLDCLLRAGVSSAEHVVVVKETAVMAEEHTADCNTIITVQKIHRMFPRL--RMITELTHATNMRFVQFN 839 (1087)
T ss_pred chhhhhhcCcCcHHHHHHhcccccceEEEEehhhhhhhhhccccchhhhHHHHHHhchhH--HHHHHHhhhccceEEeec
Confidence 5688999999999999999999999999985432 34557777888888887777732 2232 222
Q ss_pred CCCCHHH----H----HHcCCC--e-------eeEeccHHHHHHHHHHHhcCCcHHHHHHHHhcC
Q 004585 504 DLDNEPL----V----KLVGGE--L-------IETVVAHDVIGRLMIQCALQPGLAQIWEDILGF 551 (744)
Q Consensus 504 d~e~~~~----l----k~~Gad--~-------Ve~Vis~el~a~lLaq~~~~Pg~~~Vl~~Ll~~ 551 (744)
-.+...+ + ++-|.. . .--|.+..+..+++.|.+..|-+.++..-|++-
T Consensus 840 ~h~~ysl~~sr~ekker~rgsh~~~mfrlpfa~g~vfsa~mld~llyqa~ik~~vv~~vrlllgi 904 (1087)
T KOG3193|consen 840 PHNAYSLAQSRFEKKERKRGSHMPFMFRLPFAQGGVFSANMLDRLLYQAIIKPFVVDLVRLLLGI 904 (1087)
T ss_pred CcchhHHHHHHHHHHHhhccCCCceEEeccccccceeeHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 1111111 1 111110 0 001456777889999999999999999888865
No 49
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=94.12 E-value=0.067 Score=52.86 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=44.0
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~ 720 (744)
.-++++|+|+|++|.-+|+.|... |..|+|.|.+|. ...+...+ | ..+ . .|+++ +.
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~---Ga~V~V~e~DPi-~alqA~~d-G--------f~v--~--------~~~~a-~~ 77 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGL---GARVTVTEIDPI-RALQAAMD-G--------FEV--M--------TLEEA-LR 77 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHT---T-EEEEE-SSHH-HHHHHHHT-T---------EE--E---------HHHH-TT
T ss_pred CCCEEEEeCCCcccHHHHHHHhhC---CCEEEEEECChH-HHHHhhhc-C--------cEe--c--------CHHHH-Hh
Confidence 356899999999999999999875 999999998762 23334434 2 222 1 13332 56
Q ss_pred CcceEEEecCchhhhh
Q 004585 721 TFDSMSHWKTRLCILT 736 (744)
Q Consensus 721 ~~DavIilTde~ni~t 736 (744)
.+|.||..|-..+|++
T Consensus 78 ~adi~vtaTG~~~vi~ 93 (162)
T PF00670_consen 78 DADIFVTATGNKDVIT 93 (162)
T ss_dssp T-SEEEE-SSSSSSB-
T ss_pred hCCEEEECCCCccccC
Confidence 7888888886666655
No 50
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=94.01 E-value=0.079 Score=62.49 Aligned_cols=64 Identities=23% Similarity=0.287 Sum_probs=52.5
Q ss_pred cceeeccCCccCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 004585 554 AEFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (744)
Q Consensus 554 ~ei~v~~~p~lvG~tf~El~~~~-~~~iVIGI~r~~~~g~~~lnP~~dtvI~~GD~LiVIa~~~~~~~~ 621 (744)
..+.+.+.++++|+++.|+..+. .++.+++|+| +++. +.|.++++|++||.+++.|+.+++.++
T Consensus 220 r~~~V~~~s~liGkTl~el~~~~~~~v~I~~I~R---~g~~-~~p~~dtvL~~GD~L~V~G~~e~L~~l 284 (562)
T TIGR03802 220 RAYRVNRASSLIGKTVGDLENLFAGRVTIERIRR---DGKL-LTVSPDLVLNAGDVVLVVGRRDAVVQF 284 (562)
T ss_pred EEEEECCCcccCCCcHHHHHhhhCCCeEEEEEEE---CCEE-EcCCCCCeeCCCCEEEEEECHHHHHHH
Confidence 34566666789999999999764 5799999987 4555 469999999999999999999876554
No 51
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=93.94 E-value=0.26 Score=48.45 Aligned_cols=69 Identities=25% Similarity=0.151 Sum_probs=56.2
Q ss_pred EEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCcccccE
Q 004585 385 ILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (744)
Q Consensus 385 III~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~a 463 (744)
|+|+|. |..|..++++|...+ +.|+++-++++..+. ..++.++.||..+++.+.++ +.++|+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~------~~V~~~~R~~~~~~~----------~~~~~~~~~d~~d~~~~~~a-l~~~d~ 63 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG------HEVTALVRSPSKAED----------SPGVEIIQGDLFDPDSVKAA-LKGADA 63 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT------SEEEEEESSGGGHHH----------CTTEEEEESCTTCHHHHHHH-HTTSSE
T ss_pred eEEECCCChHHHHHHHHHHHCC------CEEEEEecCchhccc----------ccccccceeeehhhhhhhhh-hhhcch
Confidence 689996 888999999999765 677777777776554 24688999999999998886 558999
Q ss_pred EEEecCC
Q 004585 464 IIVLASD 470 (744)
Q Consensus 464 VIiltdd 470 (744)
||.+...
T Consensus 64 vi~~~~~ 70 (183)
T PF13460_consen 64 VIHAAGP 70 (183)
T ss_dssp EEECCHS
T ss_pred hhhhhhh
Confidence 9998864
No 52
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=93.85 E-value=0.11 Score=57.25 Aligned_cols=117 Identities=21% Similarity=0.253 Sum_probs=71.4
Q ss_pred HHHHHhhhhhh--ccchhHHHHHHHHHH-HHHHHHHhhhhhhcc---------C------------CCHHHHHHHHHHhh
Q 004585 270 KRVAYSVDVCF--SVYPYAKLLALLFAT-IFLIIFGGLALYAVS---------D------------SSFAEALWLSWTFV 325 (744)
Q Consensus 270 ~rl~y~ld~~l--s~~~~~~~l~L~~~~-l~lil~g~l~~~~ie---------~------------~s~~dA~y~~~~tl 325 (744)
++.+|--|.|- -.-.|+..+.++.+. ++-.++.+++||.+- + .+|..||-|++.|=
T Consensus 45 ~~~rYl~DifTTlVD~kWR~~lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tpCV~nV~sf~sAFLFSiETQ 124 (400)
T KOG3827|consen 45 KRLRYLQDIFTTLVDLKWRWMLLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTPCVMNVHSFTSAFLFSIETQ 124 (400)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCcceeeccchhhhheeeeeee
Confidence 35555544431 223466555554443 344555566665541 0 47999999999999
Q ss_pred hcCCCCCCCCCc--c-ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccceeecCeEEEEcc
Q 004585 326 ADSGNHADRVGT--G-PRIVSVSISSGGMLIFAMMLGLVSDAISEKVDSLRKGKSEVIEKNHILILGW 390 (744)
Q Consensus 326 tTvGygd~~~t~--~-gRi~~v~lil~Gi~i~a~lig~It~~i~~~l~~lr~G~~~v~~k~HIII~G~ 390 (744)
||+|||-.-.|. . +-+..++-.+.|+++=++++|.+...+.+ -+++.......+|-|||=-
T Consensus 125 tTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiar----PkKRAeTl~FS~~AVI~~R 188 (400)
T KOG3827|consen 125 TTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIAR----PKKRAETLIFSDHAVIALR 188 (400)
T ss_pred eeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----chhhhheeeeccceEEEee
Confidence 999999863222 3 33345556688888888888877654433 2333334567788888743
No 53
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=93.61 E-value=0.75 Score=47.24 Aligned_cols=84 Identities=14% Similarity=0.069 Sum_probs=60.2
Q ss_pred cCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCCh-HHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCccc
Q 004585 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (744)
Q Consensus 382 k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~-e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (744)
..+++|+|+|.++..-++.|...+ ..|+|++.+. ++++.+.+ ..++.++.|+.. .++| +.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~g------a~VtVvsp~~~~~l~~l~~-------~~~i~~~~~~~~-~~dl-----~~ 69 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAG------AQLRVIAEELESELTLLAE-------QGGITWLARCFD-ADIL-----EG 69 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCC------CEEEEEcCCCCHHHHHHHH-------cCCEEEEeCCCC-HHHh-----CC
Confidence 358999999999999999998754 4566666543 34444432 236888888876 4454 56
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhh
Q 004585 461 ARAIIVLASDENADQSDARALRVVLSLTGV 490 (744)
Q Consensus 461 A~aVIiltdd~~~~~sD~~NI~~~Lsar~l 490 (744)
++.||+.+++ .+.|..++..++..
T Consensus 70 ~~lVi~at~d------~~ln~~i~~~a~~~ 93 (205)
T TIGR01470 70 AFLVIAATDD------EELNRRVAHAARAR 93 (205)
T ss_pred cEEEEECCCC------HHHHHHHHHHHHHc
Confidence 8899988853 56788888888764
No 54
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=93.61 E-value=0.33 Score=54.28 Aligned_cols=76 Identities=24% Similarity=0.224 Sum_probs=57.9
Q ss_pred EEEEcccccHHHHHHHHHHhcccCCCCe-EEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCcccccE
Q 004585 385 ILILGWSDKLGSLLKQLAVANKSIGGGV-IVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (744)
Q Consensus 385 III~G~g~~g~~Ll~eL~~~~~~~~~~~-iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~a 463 (744)
|+|+|+|.+|..+++.|..... . .|++.+++.+.+++..++. ...++.+++-|..|.+.|.++ ++++|.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~-----~~~v~va~r~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~l~~~-~~~~dv 70 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGP-----FEEVTVADRNPEKAERLAEKL----LGDRVEAVQVDVNDPESLAEL-LRGCDV 70 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTC-----E-EEEEEESSHHHHHHHHT------TTTTEEEEE--TTTHHHHHHH-HTTSSE
T ss_pred CEEEcCcHHHHHHHHHHhcCCC-----CCcEEEEECCHHHHHHHHhhc----cccceeEEEEecCCHHHHHHH-HhcCCE
Confidence 7899999999999999986542 3 7999999999888776532 245789999999999998888 888999
Q ss_pred EEEecCC
Q 004585 464 IIVLASD 470 (744)
Q Consensus 464 VIiltdd 470 (744)
||-+...
T Consensus 71 Vin~~gp 77 (386)
T PF03435_consen 71 VINCAGP 77 (386)
T ss_dssp EEE-SSG
T ss_pred EEECCcc
Confidence 9988853
No 55
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=93.58 E-value=0.3 Score=47.76 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHhhhcCCCCCC-CC-----CccChhhh-hHHHHHHHHHHHHHHHHH
Q 004585 312 SSFAEALWLSWTFVADSGNHAD-RV-----GTGPRIVS-VSISSGGMLIFAMMLGLV 361 (744)
Q Consensus 312 ~s~~dA~y~~~~tltTvGygd~-~~-----t~~gRi~~-v~lil~Gi~i~a~lig~I 361 (744)
.++..|+|+++.++|+.|+|+. +. +..+.++. .+.++++++++++++|.+
T Consensus 144 ~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 144 DSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 5799999999999999999997 33 55677776 566677778888888764
No 56
>PRK04972 putative transporter; Provisional
Probab=93.35 E-value=0.072 Score=62.74 Aligned_cols=63 Identities=17% Similarity=0.148 Sum_probs=50.5
Q ss_pred ceeeccCCccCCCcHHhHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 004585 555 EFYIKRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (744)
Q Consensus 555 ei~v~~~p~lvG~tf~El~~~~~~~iVIGI~r~~~~g~~~lnP~~dtvI~~GD~LiVIa~~~~~~~~ 621 (744)
|..+.+.++++|++++|+..+.+++.+++|+|. + ..+.|.++++|+.||.|.+.|+.+++.+.
T Consensus 305 E~vVv~~s~liGkTL~eL~~r~~gv~Vl~I~R~---g-~~~~~~~~~~L~~GD~LlVvG~~~~i~~l 367 (558)
T PRK04972 305 EEIVVKNHNAVGKRLSQLKLTDHGCFLNRVIRS---Q-IEMPIDDNVVLNKGDVLQVSGDARRVKTI 367 (558)
T ss_pred EEEEEcCcccCCCCHHHhCCccCCeEEEEEecC---C-cccCCCCCCEecCCCEEEEEECHHHHHHH
Confidence 344556789999999999865468999999882 3 34567789999999999999998876553
No 57
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.07 E-value=0.49 Score=53.19 Aligned_cols=130 Identities=18% Similarity=0.188 Sum_probs=87.9
Q ss_pred CeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCccccc
Q 004585 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (744)
Q Consensus 383 ~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~ 462 (744)
+.|+|+|.|.+|..++..|...+. .+|.+++++++.++++.... ..++.+++=|+.+.+.|.++ +.+.+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d-----~~V~iAdRs~~~~~~i~~~~-----~~~v~~~~vD~~d~~al~~l-i~~~d 70 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD-----GEVTIADRSKEKCARIAELI-----GGKVEALQVDAADVDALVAL-IKDFD 70 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC-----ceEEEEeCCHHHHHHHHhhc-----cccceeEEecccChHHHHHH-HhcCC
Confidence 579999999999999999986542 68999999998888775431 23688999999999999887 66669
Q ss_pred EEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCccEEEEecCCC----CHHHHHHcCCCeeeEeccHHHHHHHHHHHhcC
Q 004585 463 AIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLD----NEPLVKLVGGELIETVVAHDVIGRLMIQCALQ 538 (744)
Q Consensus 463 aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d~e----~~~~lk~~Gad~Ve~Vis~el~a~lLaq~~~~ 538 (744)
+||-+.+. .-+..-+.+|+..+- +.+--..+.+ ..+.++++|..- | -.+=..
T Consensus 71 ~VIn~~p~----~~~~~i~ka~i~~gv-------~yvDts~~~~~~~~~~~~a~~Agit~---v----------~~~G~d 126 (389)
T COG1748 71 LVINAAPP----FVDLTILKACIKTGV-------DYVDTSYYEEPPWKLDEEAKKAGITA---V----------LGCGFD 126 (389)
T ss_pred EEEEeCCc----hhhHHHHHHHHHhCC-------CEEEcccCCchhhhhhHHHHHcCeEE---E----------cccCcC
Confidence 99999864 234444445554432 2232222222 234455666542 1 234567
Q ss_pred CcHHHHHHH
Q 004585 539 PGLAQIWED 547 (744)
Q Consensus 539 Pg~~~Vl~~ 547 (744)
||+.+++..
T Consensus 127 PGi~nv~a~ 135 (389)
T COG1748 127 PGITNVLAA 135 (389)
T ss_pred cchHHHHHH
Confidence 888776643
No 58
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=93.04 E-value=0.27 Score=48.31 Aligned_cols=67 Identities=18% Similarity=0.131 Sum_probs=53.5
Q ss_pred EEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCCcc
Q 004585 645 ILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFD 723 (744)
Q Consensus 645 ILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~~~D 723 (744)
|+|+|+ |.+|..++++|-+. |.+|+.+...+ ++.+. . .+ +.++.||..|.+.+.++ +..+|
T Consensus 1 I~V~GatG~vG~~l~~~L~~~---~~~V~~~~R~~--~~~~~--~--------~~--~~~~~~d~~d~~~~~~a-l~~~d 62 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR---GHEVTALVRSP--SKAED--S--------PG--VEIIQGDLFDPDSVKAA-LKGAD 62 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT---TSEEEEEESSG--GGHHH--C--------TT--EEEEESCTTCHHHHHHH-HTTSS
T ss_pred eEEECCCChHHHHHHHHHHHC---CCEEEEEecCc--hhccc--c--------cc--cccceeeehhhhhhhhh-hhhcc
Confidence 789997 99999999999764 79999999754 33333 1 24 44589999999998885 66899
Q ss_pred eEEEec
Q 004585 724 SMSHWK 729 (744)
Q Consensus 724 avIilT 729 (744)
+++.+.
T Consensus 63 ~vi~~~ 68 (183)
T PF13460_consen 63 AVIHAA 68 (183)
T ss_dssp EEEECC
T ss_pred hhhhhh
Confidence 999887
No 59
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=92.97 E-value=0.43 Score=49.74 Aligned_cols=75 Identities=17% Similarity=0.039 Sum_probs=49.6
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~ 720 (744)
..++|||+|||+++..=++.|-++ |..|++|++...+|-.+ +.+. .+ +.++..+.. +++ ++
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~---gA~VtVVap~i~~el~~-l~~~-------~~--i~~~~r~~~-~~d-----l~ 84 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKK---GCYVYILSKKFSKEFLD-LKKY-------GN--LKLIKGNYD-KEF-----IK 84 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC---CCEEEEEcCCCCHHHHH-HHhC-------CC--EEEEeCCCC-hHH-----hC
Confidence 456899999999998777766554 99999999865544333 3321 12 334555543 233 46
Q ss_pred CcceEEEec--Cchhh
Q 004585 721 TFDSMSHWK--TRLCI 734 (744)
Q Consensus 721 ~~DavIilT--de~ni 734 (744)
.++.|++.| .++|-
T Consensus 85 g~~LViaATdD~~vN~ 100 (223)
T PRK05562 85 DKHLIVIATDDEKLNN 100 (223)
T ss_pred CCcEEEECCCCHHHHH
Confidence 789999999 35553
No 60
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=92.84 E-value=0.13 Score=60.76 Aligned_cols=63 Identities=16% Similarity=0.093 Sum_probs=50.8
Q ss_pred ceeeccCCccCCCcHHhHhhh-----CCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 004585 555 EFYIKRWPQLDDLRFEEVVIS-----FPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (744)
Q Consensus 555 ei~v~~~p~lvG~tf~El~~~-----~~~~iVIGI~r~~~~g~~~lnP~~dtvI~~GD~LiVIa~~~~~~~~ 621 (744)
|..+.+.++++|++++|+..+ ..++.+.+|.|. |+. +.|.+|++|+.||.+.+.|+.+++.+.
T Consensus 305 e~VV~~~S~liGkTL~eL~~r~~~~~~~Gv~Vl~I~R~---g~~-i~~~~d~~L~~GD~LlV~G~~~~l~~~ 372 (562)
T TIGR03802 305 KDVVLTNKEYNGKTVAEILKNAQQFMRHGVYVEKIKRD---DQP-LPILPETVLQRGDVVTLVGTPQDVDRA 372 (562)
T ss_pred EEEEECCcccCCccHHHHhccccccccCCeEEEEEeeC---Ccc-ccCCCCCEecCCCEEEEEeCHHHHHHH
Confidence 344556789999999999854 468999999983 443 478999999999999999999876553
No 61
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.70 E-value=0.28 Score=55.04 Aligned_cols=82 Identities=22% Similarity=0.134 Sum_probs=64.6
Q ss_pred ceEEEEcccchHHHHHHHHHhhcCCC-CEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCC
Q 004585 643 EKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (744)
Q Consensus 643 ~rILI~Gwg~~g~~l~~~L~~~~~~g-s~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~~ 721 (744)
++|||+|.|.+|..++.-|.+. | .+|++.+.. .+.|+++.+.. .. .+..+.=|+.|.+.|.++ |.+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~---~d~~V~iAdRs--~~~~~~i~~~~-----~~--~v~~~~vD~~d~~al~~l-i~~ 68 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN---GDGEVTIADRS--KEKCARIAELI-----GG--KVEALQVDAADVDALVAL-IKD 68 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC---CCceEEEEeCC--HHHHHHHHhhc-----cc--cceeEEecccChHHHHHH-Hhc
Confidence 5899999999999999999864 4 899999975 57888886521 12 344578899999999998 888
Q ss_pred cceEEEec---Cchhhhhh
Q 004585 722 FDSMSHWK---TRLCILTH 737 (744)
Q Consensus 722 ~DavIilT---de~ni~t~ 737 (744)
+|++|.+. ...+++-|
T Consensus 69 ~d~VIn~~p~~~~~~i~ka 87 (389)
T COG1748 69 FDLVINAAPPFVDLTILKA 87 (389)
T ss_pred CCEEEEeCCchhhHHHHHH
Confidence 89999988 55566543
No 62
>PRK03818 putative transporter; Validated
Probab=92.64 E-value=0.14 Score=60.26 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=49.6
Q ss_pred ceeeccCCccCCCcHHhHhhh-CCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCC
Q 004585 555 EFYIKRWPQLDDLRFEEVVIS-FPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYA 620 (744)
Q Consensus 555 ei~v~~~p~lvG~tf~El~~~-~~~~iVIGI~r~~~~g~~~lnP~~dtvI~~GD~LiVIa~~~~~~~ 620 (744)
|..+.+.++++|++++|+..+ ..++.+.+|+|. | ..+.|.+|++|+.||.+.+.|+.+++.+
T Consensus 292 E~Vvv~~S~liGkTL~eL~~r~~~Gv~VlaI~R~---g-~~l~~~~d~~Lq~GD~LlVvG~~~~i~~ 354 (552)
T PRK03818 292 ERVVVTNEKVLGKKLRDLHLKNKYGVVISRLNRA---G-VELVASPDLSLQFGDILNLVGRPEAIDA 354 (552)
T ss_pred EEEEEcChhccCCcHHHhcccccCCeEEEEEeEC---C-eecCCCCCCEEecCCEEEEEECHHHHHH
Confidence 334455689999999999865 368999999983 4 3456788999999999999999987544
No 63
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=92.17 E-value=0.4 Score=49.32 Aligned_cols=72 Identities=18% Similarity=0.178 Sum_probs=58.5
Q ss_pred EEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCCcc
Q 004585 645 ILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFD 723 (744)
Q Consensus 645 ILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~~~D 723 (744)
|+|.|. |..|..+++.|.+ .+.+|+++-.+++.++.+.+.+. .+++ +.+|..|.+.|.++ +..+|
T Consensus 1 I~V~GatG~~G~~v~~~L~~---~~~~V~~l~R~~~~~~~~~l~~~--------g~~v--v~~d~~~~~~l~~a-l~g~d 66 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS---AGFSVRALVRDPSSDRAQQLQAL--------GAEV--VEADYDDPESLVAA-LKGVD 66 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH---TTGCEEEEESSSHHHHHHHHHHT--------TTEE--EES-TT-HHHHHHH-HTTCS
T ss_pred CEEECCccHHHHHHHHHHHh---CCCCcEEEEeccchhhhhhhhcc--------cceE--eecccCCHHHHHHH-HcCCc
Confidence 789998 9999999999987 58999999988767777777653 3444 79999999999887 88999
Q ss_pred eEEEecC
Q 004585 724 SMSHWKT 730 (744)
Q Consensus 724 avIilTd 730 (744)
++++++.
T Consensus 67 ~v~~~~~ 73 (233)
T PF05368_consen 67 AVFSVTP 73 (233)
T ss_dssp EEEEESS
T ss_pred eEEeecC
Confidence 9999884
No 64
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=91.95 E-value=0.4 Score=60.09 Aligned_cols=81 Identities=12% Similarity=0.065 Sum_probs=61.6
Q ss_pred CCCceEEEEcccchHHHHHHHHHhhcCCCC-------------EEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEc
Q 004585 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGS-------------ELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREG 706 (744)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~~~~gs-------------~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~G 706 (744)
.+.++|+|+|.|++|...++.|.+. ++. .|++.+. +.++++++++ .++++. .+..
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~--~~~~~~~~~~~~~~~~lV~VaD~--~~~~a~~la~------~~~~~~--~v~l 634 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASV--KTISYYGDDSEEPTDVHVIVASL--YLKDAKETVE------GIENAE--AVQL 634 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhC--cCccccccccccccccEEEEECC--CHHHHHHHHH------hcCCCc--eEEe
Confidence 4577999999999999999999753 333 3777775 4578888876 455654 3778
Q ss_pred CcCCHhhHhcCCCCCcceEEEec-Cchh
Q 004585 707 NAVIRRHLESLPLETFDSMSHWK-TRLC 733 (744)
Q Consensus 707 D~td~~~L~e~~I~~~DavIilT-de~n 733 (744)
|.+|.+.|.++ +..+|+||+++ ...+
T Consensus 635 Dv~D~e~L~~~-v~~~DaVIsalP~~~H 661 (1042)
T PLN02819 635 DVSDSESLLKY-VSQVDVVISLLPASCH 661 (1042)
T ss_pred ecCCHHHHHHh-hcCCCEEEECCCchhh
Confidence 89999999886 56799999998 4443
No 65
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.82 E-value=1.6 Score=48.25 Aligned_cols=98 Identities=15% Similarity=0.082 Sum_probs=62.2
Q ss_pred ecCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChH---------------------HHHHHHHhhhcccCCCc
Q 004585 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKE---------------------EMEMDIAKLEFDFMGTS 439 (744)
Q Consensus 381 ~k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e---------------------~le~~l~~~~~~~~~~~ 439 (744)
.+.||+|+|.|..|..+++.|...+. ..+.++|.|.- +.+.+.+++..-..+.+
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGv-----g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~ 97 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGI-----GKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVE 97 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcE
Confidence 45699999999999999999998753 26788888751 11211111110012345
Q ss_pred EEEEEeCCCCHHHHhccCcccccEEEEecCCCCCCcchHHHHHHHHHHhhhc
Q 004585 440 VICRSGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVK 491 (744)
Q Consensus 440 V~~i~Gd~t~~e~L~rAgI~~A~aVIiltdd~~~~~sD~~NI~~~Lsar~l~ 491 (744)
+..+.++.+ .+.+++. ++++|.||..+|+ .+....+...+++.+
T Consensus 98 i~~~~~~~~-~~~~~~~-~~~~DlVid~~D~------~~~r~~in~~~~~~~ 141 (338)
T PRK12475 98 IVPVVTDVT-VEELEEL-VKEVDLIIDATDN------FDTRLLINDLSQKYN 141 (338)
T ss_pred EEEEeccCC-HHHHHHH-hcCCCEEEEcCCC------HHHHHHHHHHHHHcC
Confidence 666776665 3445544 6789999999953 555566555666543
No 66
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.69 E-value=0.68 Score=51.23 Aligned_cols=85 Identities=13% Similarity=0.087 Sum_probs=57.0
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCC-EEEEEccCCch-------------------HHHHHhhcCCCCcCCCCCce
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEK-------------------EREKKLTDGGLDISGLMNIK 700 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs-~v~IIe~~p~~-------------------er~~~l~~~g~~~~~L~n~~ 700 (744)
...+|+|+|.|..|..+++.|... |. +++|++.+.-+ -+.+.+++ .+. ..-+++.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~a---Gvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~-~l~-~inp~v~ 97 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRA---GIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKE-HLR-KINSEVE 97 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc---CCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHH-HHH-HHCCCcE
Confidence 456899999999999999999864 75 89999975311 01111111 000 0125677
Q ss_pred EEEEEcCcCCHhhHhcCCCCCcceEEEecCch
Q 004585 701 LVHREGNAVIRRHLESLPLETFDSMSHWKTRL 732 (744)
Q Consensus 701 V~~i~GD~td~~~L~e~~I~~~DavIilTde~ 732 (744)
+..+.+|.+.+ .++++ ++++|.||..+|..
T Consensus 98 i~~~~~~~~~~-~~~~~-~~~~DlVid~~D~~ 127 (338)
T PRK12475 98 IVPVVTDVTVE-ELEEL-VKEVDLIIDATDNF 127 (338)
T ss_pred EEEEeccCCHH-HHHHH-hcCCCEEEEcCCCH
Confidence 77788887643 45555 78999999999654
No 67
>PRK03818 putative transporter; Validated
Probab=91.69 E-value=0.25 Score=58.24 Aligned_cols=63 Identities=16% Similarity=0.300 Sum_probs=51.6
Q ss_pred cceeeccCCccCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 004585 554 AEFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (744)
Q Consensus 554 ~ei~v~~~p~lvG~tf~El~~~~-~~~iVIGI~r~~~~g~~~lnP~~dtvI~~GD~LiVIa~~~~~~~~ 621 (744)
.++.+. .++++|+++.|+..+. .++.+.+++| ++ ....|.++++|++||.+++.|+.+++.++
T Consensus 207 r~~~V~-~s~liGkTv~el~~~~~~~v~V~~I~R---~g-~~~~p~~~~~L~~GDiLlV~G~~e~l~~l 270 (552)
T PRK03818 207 INIRVE-NPNLHGKAIKDVPILNGDKFVCSRLKR---GD-TLMVPSPDTIIQLGDLLHLVGQPEDLHKA 270 (552)
T ss_pred EEEEEe-CCCCCCCcHHHHHhhhCCCEEEEEEEE---CC-EEECCCCCCccCCCCEEEEEECHHHHHHH
Confidence 456665 6778999999999764 4799999987 35 46788999999999999999999876554
No 68
>CHL00194 ycf39 Ycf39; Provisional
Probab=91.41 E-value=1.3 Score=47.91 Aligned_cols=72 Identities=14% Similarity=0.038 Sum_probs=53.5
Q ss_pred CeEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCcccc
Q 004585 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (744)
Q Consensus 383 ~HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (744)
++|+|.|. |-.|..++++|...+ +.|..+.++++...... ..++.++.||.++++.|.++ ++.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g------~~V~~l~R~~~~~~~l~--------~~~v~~v~~Dl~d~~~l~~a-l~g~ 65 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG------YQVRCLVRNLRKASFLK--------EWGAELVYGDLSLPETLPPS-FKGV 65 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC------CeEEEEEcChHHhhhHh--------hcCCEEEECCCCCHHHHHHH-HCCC
Confidence 36899996 667999999998653 67777777764433221 23578899999999999875 5678
Q ss_pred cEEEEecC
Q 004585 462 RAIIVLAS 469 (744)
Q Consensus 462 ~aVIiltd 469 (744)
|+||-+..
T Consensus 66 d~Vi~~~~ 73 (317)
T CHL00194 66 TAIIDAST 73 (317)
T ss_pred CEEEECCC
Confidence 98888754
No 69
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=91.17 E-value=0.54 Score=47.38 Aligned_cols=78 Identities=12% Similarity=0.041 Sum_probs=54.3
Q ss_pred CCceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCC
Q 004585 641 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (744)
Q Consensus 641 ~~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I 719 (744)
..++++|+|+ |.+|..+++.|.+ .|.+|++++.+ .++.+.+.+. +. ...+..+ ...|..+.+.+.+. +
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~---~g~~V~l~~R~--~~~~~~l~~~-l~--~~~~~~~--~~~~~~~~~~~~~~-~ 95 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAR---EGARVVLVGRD--LERAQKAADS-LR--ARFGEGV--GAVETSDDAARAAA-I 95 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH---CCCEEEEEcCC--HHHHHHHHHH-HH--hhcCCcE--EEeeCCCHHHHHHH-H
Confidence 3468999998 9999999999976 37899999864 5676666541 00 0012333 45677888777654 5
Q ss_pred CCcceEEEec
Q 004585 720 ETFDSMSHWK 729 (744)
Q Consensus 720 ~~~DavIilT 729 (744)
..+|.||..|
T Consensus 96 ~~~diVi~at 105 (194)
T cd01078 96 KGADVVFAAG 105 (194)
T ss_pred hcCCEEEECC
Confidence 7899888877
No 70
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=91.11 E-value=0.49 Score=52.94 Aligned_cols=74 Identities=18% Similarity=0.159 Sum_probs=53.9
Q ss_pred EEEEcccchHHHHHHHHHhhcCCCC-EEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCCcc
Q 004585 645 ILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFD 723 (744)
Q Consensus 645 ILI~Gwg~~g~~l~~~L~~~~~~gs-~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~~~D 723 (744)
|+|+|+|.+|..+++.|.+. ... +|++.+. +.++.+.+.+ .+....+..+..|..|.+.|+++ +..+|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~--~~~~~v~va~r--~~~~~~~~~~------~~~~~~~~~~~~d~~~~~~l~~~-~~~~d 69 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR--GPFEEVTVADR--NPEKAERLAE------KLLGDRVEAVQVDVNDPESLAEL-LRGCD 69 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT--TCE-EEEEEES--SHHHHHHHHT--------TTTTEEEEE--TTTHHHHHHH-HTTSS
T ss_pred CEEEcCcHHHHHHHHHHhcC--CCCCcEEEEEC--CHHHHHHHHh------hccccceeEEEEecCCHHHHHHH-HhcCC
Confidence 79999999999999999875 233 8888886 4678777765 22334455689999999999998 89999
Q ss_pred eEEEec
Q 004585 724 SMSHWK 729 (744)
Q Consensus 724 avIilT 729 (744)
.||-+.
T Consensus 70 vVin~~ 75 (386)
T PF03435_consen 70 VVINCA 75 (386)
T ss_dssp EEEE-S
T ss_pred EEEECC
Confidence 999876
No 71
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=91.09 E-value=3.8 Score=47.79 Aligned_cols=73 Identities=19% Similarity=0.350 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHhhhcCCCCCC--C-CCccC------hhhhhHHHHHH-HHHHHHHH
Q 004585 289 LALLFATIFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHAD--R-VGTGP------RIVSVSISSGG-MLIFAMML 358 (744)
Q Consensus 289 l~L~~~~l~lil~g~l~~~~ie~~s~~dA~y~~~~tltTvGygd~--~-~t~~g------Ri~~v~lil~G-i~i~a~li 358 (744)
++.+++.+++++++++.+...+..++.++++-++.++.|+|-+-. + .+..+ +++.++.|+.| +.++++++
T Consensus 400 ~~~~~l~~~~~~i~~~~l~~~~~~~~~~~lfEv~SA~gtVGlSlG~t~~~~~~~~~~~~~K~vli~~M~~GRleil~~lv 479 (499)
T COG0168 400 LAFFFLYLLILIIGALILILTGYDPFIDALFEVVSAFGTVGLSLGITGDLASNFALPPLAKLVLIALMLIGRLEILTVLV 479 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHhhcCCCCCCCCCCCccccccCchHHHHHHHHHHhhccchhhHHH
Confidence 455555566667777777666555899999999999999998543 1 22233 88777777777 55666655
Q ss_pred HHH
Q 004585 359 GLV 361 (744)
Q Consensus 359 g~I 361 (744)
...
T Consensus 480 ~~~ 482 (499)
T COG0168 480 LFT 482 (499)
T ss_pred hhh
Confidence 543
No 72
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=90.82 E-value=0.3 Score=46.55 Aligned_cols=72 Identities=19% Similarity=0.273 Sum_probs=50.2
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCC-EEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs-~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I 719 (744)
..++++|+|.|..+..++..|.+. |. +|+|++. +.+|.+.|++ .+.+..+..+. -+.+.+ .+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~---g~~~i~i~nR--t~~ra~~l~~------~~~~~~~~~~~-----~~~~~~-~~ 73 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAAL---GAKEITIVNR--TPERAEALAE------EFGGVNIEAIP-----LEDLEE-AL 73 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHT---TSSEEEEEES--SHHHHHHHHH------HHTGCSEEEEE-----GGGHCH-HH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc---CCCEEEEEEC--CHHHHHHHHH------HcCccccceee-----HHHHHH-HH
Confidence 467999999999999999999875 54 5999996 5689898886 33322222222 222322 26
Q ss_pred CCcceEEEec
Q 004585 720 ETFDSMSHWK 729 (744)
Q Consensus 720 ~~~DavIilT 729 (744)
.++|.+|..|
T Consensus 74 ~~~DivI~aT 83 (135)
T PF01488_consen 74 QEADIVINAT 83 (135)
T ss_dssp HTESEEEE-S
T ss_pred hhCCeEEEec
Confidence 6799999888
No 73
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=90.57 E-value=0.35 Score=54.38 Aligned_cols=54 Identities=20% Similarity=0.261 Sum_probs=44.9
Q ss_pred CCccCCCcHHhHhhhCC-CeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCC
Q 004585 561 WPQLDDLRFEEVVISFP-DAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYA 620 (744)
Q Consensus 561 ~p~lvG~tf~El~~~~~-~~iVIGI~r~~~~g~~~lnP~~dtvI~~GD~LiVIa~~~~~~~ 620 (744)
..+++|+.+++++ +| .+.+.+|.| +|+ .++|.++++|++||.+++++.+.+...
T Consensus 422 ~~~~ig~~lr~l~--~p~~~~~~~v~R---d~q-~i~p~g~t~l~~gD~l~v~~~~~d~~~ 476 (574)
T COG3263 422 DKWCVGAALRNLR--MPKWTRIAAVFR---DGQ-LIHPQGSTRLREGDVLCVIGSERDLRA 476 (574)
T ss_pred CCcccchhhhhcc--CCccceeeeEEe---cCc-eeccCCCceeecCCEEEEEeccccHHH
Confidence 4578999999987 55 578888888 354 689999999999999999999977644
No 74
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=90.24 E-value=0.49 Score=42.99 Aligned_cols=63 Identities=14% Similarity=0.074 Sum_probs=41.3
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~ 720 (744)
..++|||+|+|+.+..-++.|-+ .|.+|++++... +-++ + .++ +..-. ++ ..++
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~---~gA~v~vis~~~--~~~~---~---------~i~--~~~~~------~~-~~l~ 59 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLE---AGAKVTVISPEI--EFSE---G---------LIQ--LIRRE------FE-EDLD 59 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCC---CTBEEEEEESSE--HHHH---T---------SCE--EEESS-------G-GGCT
T ss_pred CCCEEEEECCCHHHHHHHHHHHh---CCCEEEEECCch--hhhh---h---------HHH--HHhhh------HH-HHHh
Confidence 35799999999999988887754 599999999753 1222 1 122 12222 22 4488
Q ss_pred CcceEEEec
Q 004585 721 TFDSMSHWK 729 (744)
Q Consensus 721 ~~DavIilT 729 (744)
.+|.+++.|
T Consensus 60 ~~~lV~~at 68 (103)
T PF13241_consen 60 GADLVFAAT 68 (103)
T ss_dssp TESEEEE-S
T ss_pred hheEEEecC
Confidence 899999998
No 75
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=90.20 E-value=0.44 Score=46.61 Aligned_cols=77 Identities=22% Similarity=0.148 Sum_probs=49.4
Q ss_pred eEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCCcc
Q 004585 644 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFD 723 (744)
Q Consensus 644 rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~~~D 723 (744)
+|.|||+|.-|..++..|... |.+|++...+ ++..+.+.+.+.....+++..+ .....--..|++. ++.+|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~---g~~V~l~~~~--~~~~~~i~~~~~n~~~~~~~~l---~~~i~~t~dl~~a-~~~ad 71 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN---GHEVTLWGRD--EEQIEEINETRQNPKYLPGIKL---PENIKATTDLEEA-LEDAD 71 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC---TEEEEEETSC--HHHHHHHHHHTSETTTSTTSBE---ETTEEEESSHHHH-HTT-S
T ss_pred CEEEECcCHHHHHHHHHHHHc---CCEEEEEecc--HHHHHHHHHhCCCCCCCCCccc---CcccccccCHHHH-hCccc
Confidence 689999999999999999874 8999999964 5777777764432223444332 1111112233332 57889
Q ss_pred eEEEec
Q 004585 724 SMSHWK 729 (744)
Q Consensus 724 avIilT 729 (744)
.+|+.+
T Consensus 72 ~Iiiav 77 (157)
T PF01210_consen 72 IIIIAV 77 (157)
T ss_dssp EEEE-S
T ss_pred EEEecc
Confidence 888877
No 76
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=89.93 E-value=1.1 Score=45.86 Aligned_cols=101 Identities=10% Similarity=0.102 Sum_probs=62.5
Q ss_pred CeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCccccc
Q 004585 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (744)
Q Consensus 383 ~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~ 462 (744)
.+++|.|+|..|..+++.|...+ +.|+++|.+++.++...+.+ +..++ +. +.+ ...++|
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G------~~Vvv~D~~~~~~~~~~~~~-------g~~~v--~~---~~l---~~~~~D 87 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEG------AKLIVADINEEAVARAAELF-------GATVV--AP---EEI---YSVDAD 87 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC------CEEEEEcCCHHHHHHHHHHc-------CCEEE--cc---hhh---ccccCC
Confidence 47999999999999999998654 67889999987776654321 22222 11 222 223688
Q ss_pred EEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCccEEE-EecC----CCCHHHHHHcCCC
Q 004585 463 AIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVV-EMSD----LDNEPLVKLVGGE 517 (744)
Q Consensus 463 aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIA-rv~d----~e~~~~lk~~Gad 517 (744)
.++-++- .++...-.++++.. ++|+ ..++ ++..+.|+..|+.
T Consensus 88 v~vp~A~---------~~~I~~~~~~~l~~----~~v~~~AN~~~~~~~~~~~L~~~Gi~ 134 (200)
T cd01075 88 VFAPCAL---------GGVINDDTIPQLKA----KAIAGAANNQLADPRHGQMLHERGIL 134 (200)
T ss_pred EEEeccc---------ccccCHHHHHHcCC----CEEEECCcCccCCHhHHHHHHHCCCE
Confidence 8886552 12333333455542 3444 4444 4666678887864
No 77
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=89.89 E-value=4.1 Score=42.54 Aligned_cols=85 Identities=12% Similarity=0.029 Sum_probs=57.0
Q ss_pred cCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCcccc
Q 004585 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (744)
Q Consensus 382 k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (744)
..+++|+|+|+++.+=++.|...+ ..+.|+...-.++++.+.. ...+.++..+. ++++| +.|
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~g-----A~VtVVap~i~~el~~l~~-------~~~i~~~~r~~-~~~dl-----~g~ 86 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKG-----CYVYILSKKFSKEFLDLKK-------YGNLKLIKGNY-DKEFI-----KDK 86 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-----CEEEEEcCCCCHHHHHHHh-------CCCEEEEeCCC-ChHHh-----CCC
Confidence 458999999999988788887654 2344444433344554432 23577776554 45555 568
Q ss_pred cEEEEecCCCCCCcchHHHHHHHHHHhhh
Q 004585 462 RAIIVLASDENADQSDARALRVVLSLTGV 490 (744)
Q Consensus 462 ~aVIiltdd~~~~~sD~~NI~~~Lsar~l 490 (744)
+.||+.|+| .+.|-.++-.++..
T Consensus 87 ~LViaATdD------~~vN~~I~~~a~~~ 109 (223)
T PRK05562 87 HLIVIATDD------EKLNNKIRKHCDRL 109 (223)
T ss_pred cEEEECCCC------HHHHHHHHHHHHHc
Confidence 899999964 67788888888765
No 78
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=89.81 E-value=0.66 Score=52.52 Aligned_cols=69 Identities=22% Similarity=0.157 Sum_probs=56.7
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCC-CEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g-s~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I 719 (744)
..+++||+|.|..|..+++.|.+. | ..|+|++. ..||.+.|++ ++. |++...+.|.+. +
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~---g~~~i~IaNR--T~erA~~La~------~~~--------~~~~~l~el~~~-l 236 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEK---GVKKITIANR--TLERAEELAK------KLG--------AEAVALEELLEA-L 236 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhC---CCCEEEEEcC--CHHHHHHHHH------HhC--------CeeecHHHHHHh-h
Confidence 457899999999999999999874 5 78888886 5699999997 332 666777777766 8
Q ss_pred CCcceEEEec
Q 004585 720 ETFDSMSHWK 729 (744)
Q Consensus 720 ~~~DavIilT 729 (744)
.++|.|+..|
T Consensus 237 ~~~DvVissT 246 (414)
T COG0373 237 AEADVVISST 246 (414)
T ss_pred hhCCEEEEec
Confidence 9999999998
No 79
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=89.54 E-value=2.6 Score=43.27 Aligned_cols=71 Identities=15% Similarity=0.090 Sum_probs=50.5
Q ss_pred EEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChH--HHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCcccc
Q 004585 385 ILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKE--EMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (744)
Q Consensus 385 III~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e--~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (744)
|+|.|. |..|..+++.|...+ +.|.+.-+++. ..+.+ + ..++.++.||..+++.|.++ .+.+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~------~~V~~l~R~~~~~~~~~l-~-------~~g~~vv~~d~~~~~~l~~a-l~g~ 65 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAG------FSVRALVRDPSSDRAQQL-Q-------ALGAEVVEADYDDPESLVAA-LKGV 65 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT------GCEEEEESSSHHHHHHHH-H-------HTTTEEEES-TT-HHHHHHH-HTTC
T ss_pred CEEECCccHHHHHHHHHHHhCC------CCcEEEEeccchhhhhhh-h-------cccceEeecccCCHHHHHHH-HcCC
Confidence 678886 888999999999843 45555555542 22222 2 24567889999999999876 7899
Q ss_pred cEEEEecCC
Q 004585 462 RAIIVLASD 470 (744)
Q Consensus 462 ~aVIiltdd 470 (744)
++|++++..
T Consensus 66 d~v~~~~~~ 74 (233)
T PF05368_consen 66 DAVFSVTPP 74 (233)
T ss_dssp SEEEEESSC
T ss_pred ceEEeecCc
Confidence 999999974
No 80
>CHL00194 ycf39 Ycf39; Provisional
Probab=89.37 E-value=1 Score=48.79 Aligned_cols=70 Identities=10% Similarity=0.060 Sum_probs=52.6
Q ss_pred eEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCCc
Q 004585 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETF 722 (744)
Q Consensus 644 rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~~~ 722 (744)
+|+|.|+ |-+|..+++.|.+ .|.+|+.+...+ ++...+.+ .+++ .+.||.+|.+.|+++ ++.+
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~---~g~~V~~l~R~~--~~~~~l~~--------~~v~--~v~~Dl~d~~~l~~a-l~g~ 65 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALD---EGYQVRCLVRNL--RKASFLKE--------WGAE--LVYGDLSLPETLPPS-FKGV 65 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHH---CCCeEEEEEcCh--HHhhhHhh--------cCCE--EEECCCCCHHHHHHH-HCCC
Confidence 6999997 9999999999976 488999998643 33332222 2333 589999999999875 6678
Q ss_pred ceEEEec
Q 004585 723 DSMSHWK 729 (744)
Q Consensus 723 DavIilT 729 (744)
|+|+-+.
T Consensus 66 d~Vi~~~ 72 (317)
T CHL00194 66 TAIIDAS 72 (317)
T ss_pred CEEEECC
Confidence 9999875
No 81
>PRK04972 putative transporter; Provisional
Probab=89.10 E-value=0.63 Score=54.95 Aligned_cols=54 Identities=26% Similarity=0.314 Sum_probs=45.0
Q ss_pred cCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 004585 564 LDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (744)
Q Consensus 564 lvG~tf~El~~~~-~~~iVIGI~r~~~~g~~~lnP~~dtvI~~GD~LiVIa~~~~~~~~ 621 (744)
+.||+++|+..+. .++.+.+|+| +++ ...|.++++|++||.+++.|+.+++.+.
T Consensus 228 ~~Gktl~el~~~~~~~v~I~~I~R---~g~-~~~p~~dt~L~~GDiL~V~G~~e~l~~l 282 (558)
T PRK04972 228 TDGKNLRELGIYRQTGCYIERIRR---NGI-LANPDGDAVLQMGDEIALVGYPDAHARL 282 (558)
T ss_pred cCCCCHHHHHhhcCCCEEEEEEEE---CCE-EecCCCCCEeCCCCEEEEEECHHHHHHH
Confidence 3799999998764 4799999987 354 5788999999999999999999876543
No 82
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=89.09 E-value=2.2 Score=53.82 Aligned_cols=104 Identities=18% Similarity=0.127 Sum_probs=70.9
Q ss_pred ecCeEEEEcccccHHHHHHHHHHhcccC--------CCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHH
Q 004585 381 EKNHILILGWSDKLGSLLKQLAVANKSI--------GGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILAD 452 (744)
Q Consensus 381 ~k~HIII~G~g~~g~~Ll~eL~~~~~~~--------~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~ 452 (744)
...+|+|+|.|..|...++.|....... .....|.++|.+++..+++.+.+ .++..+..|.+|.+.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~------~~~~~v~lDv~D~e~ 641 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI------ENAEAVQLDVSDSES 641 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc------CCCceEEeecCCHHH
Confidence 3569999999999999999997532110 11235888999988877665431 245678889999999
Q ss_pred HhccCcccccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCccEEEEe
Q 004585 453 LKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEM 502 (744)
Q Consensus 453 L~rAgI~~A~aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv 502 (744)
|.++ ++.+|+||++++. ..+..++..+-+.. .|++.+-
T Consensus 642 L~~~-v~~~DaVIsalP~-------~~H~~VAkaAieaG----kHvv~ek 679 (1042)
T PLN02819 642 LLKY-VSQVDVVISLLPA-------SCHAVVAKACIELK----KHLVTAS 679 (1042)
T ss_pred HHHh-hcCCCEEEECCCc-------hhhHHHHHHHHHcC----CCEEECc
Confidence 9876 4569999999964 23444444444433 3566554
No 83
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=88.85 E-value=1 Score=46.50 Aligned_cols=74 Identities=16% Similarity=0.087 Sum_probs=47.0
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~ 720 (744)
..++|+|+|+|.++..=++.|.+ .|.+|++++....+|-.....++ .+.++. +.-+.+.+ .
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~---~ga~v~Vvs~~~~~el~~~~~~~----------~i~~~~-~~~~~~~~-----~ 71 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLK---AGADVTVVSPEFEPELKALIEEG----------KIKWIE-REFDAEDL-----D 71 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh---cCCEEEEEcCCccHHHHHHHHhc----------Ccchhh-cccChhhh-----c
Confidence 34689999999999987777765 49999999976423333322221 122233 33444443 3
Q ss_pred CcceEEEec--Cchh
Q 004585 721 TFDSMSHWK--TRLC 733 (744)
Q Consensus 721 ~~DavIilT--de~n 733 (744)
.++.+++.| .++|
T Consensus 72 ~~~lviaAt~d~~ln 86 (210)
T COG1648 72 DAFLVIAATDDEELN 86 (210)
T ss_pred CceEEEEeCCCHHHH
Confidence 489999999 3454
No 84
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=88.81 E-value=1.3 Score=52.17 Aligned_cols=84 Identities=14% Similarity=-0.018 Sum_probs=56.8
Q ss_pred CCCceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhc----CCCC-cCCCCCceEEEEEcCcCCHhh
Q 004585 640 KYPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTD----GGLD-ISGLMNIKLVHREGNAVIRRH 713 (744)
Q Consensus 640 ~~~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~----~g~~-~~~L~n~~V~~i~GD~td~~~ 713 (744)
+..+.|+|.|+ |.+|..++++|.+ .|.+|+++..+ .++.+.+.+ .+++ .+......+.++.||.+|.+.
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk---~G~~Vval~Rn--~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLK---LGFRVRAGVRS--AQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHH---CCCeEEEEeCC--HHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 34568999998 7999999999976 48999988764 345443322 0000 000011225568999999999
Q ss_pred HhcCCCCCcceEEEec
Q 004585 714 LESLPLETFDSMSHWK 729 (744)
Q Consensus 714 L~e~~I~~~DavIilT 729 (744)
++++ ++..|.||...
T Consensus 153 I~~a-LggiDiVVn~A 167 (576)
T PLN03209 153 IGPA-LGNASVVICCI 167 (576)
T ss_pred HHHH-hcCCCEEEEcc
Confidence 8774 67889988876
No 85
>PRK00536 speE spermidine synthase; Provisional
Probab=88.60 E-value=1.3 Score=47.43 Aligned_cols=74 Identities=11% Similarity=0.046 Sum_probs=46.0
Q ss_pred CCCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCC--CCcCCCCCceEEEEEcCcCCHhhHhcC
Q 004585 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGG--LDISGLMNIKLVHREGNAVIRRHLESL 717 (744)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g--~~~~~L~n~~V~~i~GD~td~~~L~e~ 717 (744)
..++||||+|||+-| .++|+-++ + .+|+++|-+ ++-.+...+.= +. ..+++-++.++. .+++.
T Consensus 71 ~~pk~VLIiGGGDGg--~~REvLkh--~-~~v~mVeID--~~Vv~~~k~~lP~~~-~~~~DpRv~l~~-------~~~~~ 135 (262)
T PRK00536 71 KELKEVLIVDGFDLE--LAHQLFKY--D-THVDFVQAD--EKILDSFISFFPHFH-EVKNNKNFTHAK-------QLLDL 135 (262)
T ss_pred CCCCeEEEEcCCchH--HHHHHHCc--C-CeeEEEECC--HHHHHHHHHHCHHHH-HhhcCCCEEEee-------hhhhc
Confidence 457899999999886 46666665 2 499999974 33332211100 00 135566665554 24455
Q ss_pred CCCCcceEEEe
Q 004585 718 PLETFDSMSHW 728 (744)
Q Consensus 718 ~I~~~DavIil 728 (744)
.-++||.||+=
T Consensus 136 ~~~~fDVIIvD 146 (262)
T PRK00536 136 DIKKYDLIICL 146 (262)
T ss_pred cCCcCCEEEEc
Confidence 55789999986
No 86
>PRK01581 speE spermidine synthase; Validated
Probab=88.46 E-value=1.9 Score=48.09 Aligned_cols=82 Identities=11% Similarity=0.008 Sum_probs=49.1
Q ss_pred CCCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcC-C---CCcCCCCCceEEEEEcCcCCHhhHh
Q 004585 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDG-G---LDISGLMNIKLVHREGNAVIRRHLE 715 (744)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~-g---~~~~~L~n~~V~~i~GD~td~~~L~ 715 (744)
..+++||++|+|. |..+ +++-++ .+..+|+++|.+| +..+...+. . +....+.+-.+.+++||+. +.|+
T Consensus 149 ~~PkrVLIIGgGd-G~tl-relLk~-~~v~~It~VEIDp--eVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~--~fL~ 221 (374)
T PRK01581 149 IDPKRVLILGGGD-GLAL-REVLKY-ETVLHVDLVDLDG--SMINMARNVPELVSLNKSAFFDNRVNVHVCDAK--EFLS 221 (374)
T ss_pred CCCCEEEEECCCH-HHHH-HHHHhc-CCCCeEEEEeCCH--HHHHHHHhccccchhccccCCCCceEEEECcHH--HHHH
Confidence 3467999999884 4444 444443 3457899999864 332222110 0 1112344556667899998 4555
Q ss_pred cCCCCCcceEEEec
Q 004585 716 SLPLETFDSMSHWK 729 (744)
Q Consensus 716 e~~I~~~DavIilT 729 (744)
+. -++||.|++=.
T Consensus 222 ~~-~~~YDVIIvDl 234 (374)
T PRK01581 222 SP-SSLYDVIIIDF 234 (374)
T ss_pred hc-CCCccEEEEcC
Confidence 53 36899999865
No 87
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=88.42 E-value=0.97 Score=44.78 Aligned_cols=66 Identities=12% Similarity=0.178 Sum_probs=40.6
Q ss_pred cCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCcccc
Q 004585 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (744)
Q Consensus 382 k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (744)
-.+++|||||..|..+++.|+..+ ..|.+.|.||-..-++.. .+ +.+. .+++| +.+|
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~G------a~V~V~e~DPi~alqA~~------dG--f~v~--------~~~~a-~~~a 79 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLG------ARVTVTEIDPIRALQAAM------DG--FEVM--------TLEEA-LRDA 79 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-------EEEEE-SSHHHHHHHHH------TT---EEE---------HHHH-TTT-
T ss_pred CCEEEEeCCCcccHHHHHHHhhCC------CEEEEEECChHHHHHhhh------cC--cEec--------CHHHH-HhhC
Confidence 347999999999999999998764 689999999955333221 12 2222 24443 5688
Q ss_pred cEEEEecCC
Q 004585 462 RAIIVLASD 470 (744)
Q Consensus 462 ~aVIiltdd 470 (744)
|.+|..|..
T Consensus 80 di~vtaTG~ 88 (162)
T PF00670_consen 80 DIFVTATGN 88 (162)
T ss_dssp SEEEE-SSS
T ss_pred CEEEECCCC
Confidence 988888865
No 88
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=88.17 E-value=1.5 Score=48.62 Aligned_cols=84 Identities=11% Similarity=0.092 Sum_probs=55.4
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCC-EEEEEccCCch-------------------HHHHHhhcCCCCcCCC-CCc
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEK-------------------EREKKLTDGGLDISGL-MNI 699 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs-~v~IIe~~p~~-------------------er~~~l~~~g~~~~~L-~n~ 699 (744)
...+|+|+|.|..|..+++.|... |. ++++++.+.-+ -+.+.+.+ .+ .++ +++
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~a---Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~-~l--~~inp~v 96 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRA---GVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKK-RL--EEINSDV 96 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHH-HH--HHHCCCc
Confidence 456899999999999999999864 66 89999975211 11111111 00 011 566
Q ss_pred eEEEEEcCcCCHhhHhcCCCCCcceEEEecCch
Q 004585 700 KLVHREGNAVIRRHLESLPLETFDSMSHWKTRL 732 (744)
Q Consensus 700 ~V~~i~GD~td~~~L~e~~I~~~DavIilTde~ 732 (744)
.+..+..+.+... +.+. +.++|.||..+|..
T Consensus 97 ~v~~~~~~~~~~~-~~~~-~~~~DlVid~~Dn~ 127 (339)
T PRK07688 97 RVEAIVQDVTAEE-LEEL-VTGVDLIIDATDNF 127 (339)
T ss_pred EEEEEeccCCHHH-HHHH-HcCCCEEEEcCCCH
Confidence 7766777776543 4444 78899999999654
No 89
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=88.07 E-value=0.99 Score=49.27 Aligned_cols=78 Identities=22% Similarity=0.118 Sum_probs=53.3
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~ 720 (744)
..++|+|+|.|.+|..+++.|... .+..|++++. +.+|.+.+++ ++.. .+ .+.+.+.+. +.
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~--g~~~V~v~~r--~~~ra~~la~------~~g~-~~-------~~~~~~~~~-l~ 237 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAK--GVAEITIANR--TYERAEELAK------ELGG-NA-------VPLDELLEL-LN 237 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHc--CCCEEEEEeC--CHHHHHHHHH------HcCC-eE-------EeHHHHHHH-Hh
Confidence 456899999999999999999752 3478999986 4577777775 2221 11 222334443 67
Q ss_pred CcceEEEec--Cch-hhhhh
Q 004585 721 TFDSMSHWK--TRL-CILTH 737 (744)
Q Consensus 721 ~~DavIilT--de~-ni~t~ 737 (744)
++|.||..| ++. +++..
T Consensus 238 ~aDvVi~at~~~~~~~~~~~ 257 (311)
T cd05213 238 EADVVISATGAPHYAKIVER 257 (311)
T ss_pred cCCEEEECCCCCchHHHHHH
Confidence 799999999 544 44444
No 90
>PRK10637 cysG siroheme synthase; Provisional
Probab=87.75 E-value=1.9 Score=49.63 Aligned_cols=75 Identities=15% Similarity=-0.074 Sum_probs=49.4
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~ 720 (744)
..++|||+|+|+++..=++.|.++ |.+|++|+.+-.+|-.+. .+. .+ +..+..+... ++ ++
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~~---ga~v~visp~~~~~~~~l-~~~-------~~--i~~~~~~~~~-~d-----l~ 71 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLDA---GARLTVNALAFIPQFTAW-ADA-------GM--LTLVEGPFDE-SL-----LD 71 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEcCCCCHHHHHH-HhC-------CC--EEEEeCCCCh-HH-----hC
Confidence 457999999999988766666554 899999997654444332 221 12 3345655532 33 46
Q ss_pred CcceEEEec--Cchhh
Q 004585 721 TFDSMSHWK--TRLCI 734 (744)
Q Consensus 721 ~~DavIilT--de~ni 734 (744)
.++.+++.| .++|-
T Consensus 72 ~~~lv~~at~d~~~n~ 87 (457)
T PRK10637 72 TCWLAIAATDDDAVNQ 87 (457)
T ss_pred CCEEEEECCCCHHHhH
Confidence 788888888 35553
No 91
>PRK06914 short chain dehydrogenase; Provisional
Probab=87.36 E-value=2.3 Score=44.76 Aligned_cols=82 Identities=11% Similarity=0.024 Sum_probs=54.8
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhcc-----
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA----- 456 (744)
.+++|+|.+. .|..++++|.+.+ +.|+++.++++..+...+.....-.+.++.++.+|.++++.+++.
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~ 77 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKG------YLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLK 77 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCC------CEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHH
Confidence 4789999754 6899999998643 678888888776655433221100124688899999999987651
Q ss_pred CcccccEEEEecCC
Q 004585 457 SVSKARAIIVLASD 470 (744)
Q Consensus 457 gI~~A~aVIiltdd 470 (744)
.....|.+|.++..
T Consensus 78 ~~~~id~vv~~ag~ 91 (280)
T PRK06914 78 EIGRIDLLVNNAGY 91 (280)
T ss_pred hcCCeeEEEECCcc
Confidence 12345888877653
No 92
>PRK08267 short chain dehydrogenase; Provisional
Probab=87.28 E-value=1.2 Score=46.30 Aligned_cols=76 Identities=11% Similarity=-0.026 Sum_probs=54.3
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC--C-
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--P- 718 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--~- 718 (744)
++++|.|+ |.+|..+++.|.+ .|..|.+++.+ .+..+.+.+ .+.+..+.++++|.+|.+.+++. +
T Consensus 2 k~vlItGasg~iG~~la~~l~~---~G~~V~~~~r~--~~~~~~~~~------~~~~~~~~~~~~D~~~~~~v~~~~~~~ 70 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAA---EGWRVGAYDIN--EAGLAALAA------ELGAGNAWTGALDVTDRAAWDAALADF 70 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHH---CCCeEEEEeCC--HHHHHHHHH------HhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 47999998 5689999999976 48899998864 455555543 22334466789999998877652 1
Q ss_pred ----CCCcceEEEec
Q 004585 719 ----LETFDSMSHWK 729 (744)
Q Consensus 719 ----I~~~DavIilT 729 (744)
....|.+|..+
T Consensus 71 ~~~~~~~id~vi~~a 85 (260)
T PRK08267 71 AAATGGRLDVLFNNA 85 (260)
T ss_pred HHHcCCCCCEEEECC
Confidence 34568888766
No 93
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=87.25 E-value=1.5 Score=45.43 Aligned_cols=107 Identities=15% Similarity=0.126 Sum_probs=65.1
Q ss_pred ecCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCCh----------HHHHHHHHhhhcccCCCcEE-EEEeCCCC
Q 004585 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK----------EEMEMDIAKLEFDFMGTSVI-CRSGSPLI 449 (744)
Q Consensus 381 ~k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~----------e~le~~l~~~~~~~~~~~V~-~i~Gd~t~ 449 (744)
...+++|.|+|.+|..+++.|.+.+ ..+|.++|.+. +.++...+. ..+. +-.++..+
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~G-----~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~-------~~~~~~~~~~~~~ 89 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEEG-----GKVLAVSDPDGYIYDPGITTEELINYAVAL-------GGSARVKVQDYFP 89 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-----CEEEEEEcCCCcEECCCCCHHHHHHHHHhh-------CCccccCcccccC
Confidence 3469999999999999999998753 36888889887 555543221 1111 11234444
Q ss_pred HHHHhccCcccccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCccEEEEecC----CCCHHHHHHcC
Q 004585 450 LADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSD----LDNEPLVKLVG 515 (744)
Q Consensus 450 ~e~L~rAgI~~A~aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d----~e~~~~lk~~G 515 (744)
.+.+.. . ++|.+|-++.. |+...-.++++. +++|++.-| ++..+.|+.-|
T Consensus 90 ~~~l~~--~-~~DVlipaA~~---------~~i~~~~a~~l~----a~~V~e~AN~p~t~~a~~~L~~~G 143 (217)
T cd05211 90 GEAILG--L-DVDIFAPCALG---------NVIDLENAKKLK----AKVVAEGANNPTTDEALRILHERG 143 (217)
T ss_pred ccccee--c-cccEEeecccc---------CccChhhHhhcC----ccEEEeCCCCCCCHHHHHHHHHCC
Confidence 455553 3 78988888842 233333344442 457776544 34455677777
No 94
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=87.17 E-value=2.4 Score=42.59 Aligned_cols=79 Identities=16% Similarity=0.032 Sum_probs=54.8
Q ss_pred cCeEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCccc
Q 004585 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (744)
Q Consensus 382 k~HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (744)
..+++|+|+ |..|..+++.|.... ..|+++.++++..+...+++.. ..+..+...+..+.+++.++ +.+
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g------~~V~l~~R~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~-~~~ 97 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREG------ARVVLVGRDLERAQKAADSLRA---RFGEGVGAVETSDDAARAAA-IKG 97 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC------CEEEEEcCCHHHHHHHHHHHHh---hcCCcEEEeeCCCHHHHHHH-Hhc
Confidence 468999996 888999999987642 5788888888777665543311 11234556677888777653 468
Q ss_pred ccEEEEecCC
Q 004585 461 ARAIIVLASD 470 (744)
Q Consensus 461 A~aVIiltdd 470 (744)
||.||..+..
T Consensus 98 ~diVi~at~~ 107 (194)
T cd01078 98 ADVVFAAGAA 107 (194)
T ss_pred CCEEEECCCC
Confidence 8988887753
No 95
>PRK09186 flagellin modification protein A; Provisional
Probab=87.15 E-value=2.2 Score=44.06 Aligned_cols=81 Identities=22% Similarity=0.170 Sum_probs=53.9
Q ss_pred cCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC--c
Q 004585 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--V 458 (744)
Q Consensus 382 k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--I 458 (744)
.+.++|.|.+. .|..++++|.+.+ ..|+++.++++..+...+++.....+..+.++.+|.++++.++++- +
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g------~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAG------GIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKS 77 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------CEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHH
Confidence 35789999754 6999999998653 5688888887776665544321112334667789999998876641 1
Q ss_pred ----ccccEEEEec
Q 004585 459 ----SKARAIIVLA 468 (744)
Q Consensus 459 ----~~A~aVIilt 468 (744)
..-|.+|-.+
T Consensus 78 ~~~~~~id~vi~~A 91 (256)
T PRK09186 78 AEKYGKIDGAVNCA 91 (256)
T ss_pred HHHcCCccEEEECC
Confidence 1257777665
No 96
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=87.12 E-value=2 Score=44.75 Aligned_cols=77 Identities=13% Similarity=0.116 Sum_probs=52.6
Q ss_pred cCeEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCC-HHHHhccCcc
Q 004585 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLI-LADLKKVSVS 459 (744)
Q Consensus 382 k~HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~-~e~L~rAgI~ 459 (744)
.+.|+|+|. |..|..++++|...+ +.|++..++++..+.... .+.++.++.||.++ .+.+.++-..
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g------~~V~~~~R~~~~~~~~~~------~~~~~~~~~~Dl~d~~~~l~~~~~~ 84 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKG------FAVKAGVRDVDKAKTSLP------QDPSLQIVRADVTEGSDKLVEAIGD 84 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCC------CEEEEEecCHHHHHHhcc------cCCceEEEEeeCCCCHHHHHHHhhc
Confidence 457999996 778999999998643 567766666655443221 12358899999998 4666554224
Q ss_pred cccEEEEecCC
Q 004585 460 KARAIIVLASD 470 (744)
Q Consensus 460 ~A~aVIiltdd 470 (744)
.+|.||..+..
T Consensus 85 ~~d~vi~~~g~ 95 (251)
T PLN00141 85 DSDAVICATGF 95 (251)
T ss_pred CCCEEEECCCC
Confidence 78999987653
No 97
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=86.79 E-value=0.99 Score=43.20 Aligned_cols=82 Identities=16% Similarity=0.082 Sum_probs=50.7
Q ss_pred EEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCC-CceEEEEEcCcCCHhhHhcCCCCCcc
Q 004585 645 ILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM-NIKLVHREGNAVIRRHLESLPLETFD 723 (744)
Q Consensus 645 ILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~-n~~V~~i~GD~td~~~L~e~~I~~~D 723 (744)
|+|+|.|.+|..++..|.+ .|.+|+++... + +.+.+.+.|+....-. +..+ ...-...+. .+..+.+|
T Consensus 1 I~I~G~GaiG~~~a~~L~~---~g~~V~l~~r~--~-~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~D 69 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ---AGHDVTLVSRS--P-RLEAIKEQGLTITGPDGDETV-QPPIVISAP----SADAGPYD 69 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH---TTCEEEEEESH--H-HHHHHHHHCEEEEETTEEEEE-EEEEEESSH----GHHHSTES
T ss_pred CEEECcCHHHHHHHHHHHH---CCCceEEEEcc--c-cHHhhhheeEEEEecccceec-ccccccCcc----hhccCCCc
Confidence 7899999999999999986 48999999963 3 5555655453211111 1111 111112222 44578899
Q ss_pred eEEEec---Cchhhhhh
Q 004585 724 SMSHWK---TRLCILTH 737 (744)
Q Consensus 724 avIilT---de~ni~t~ 737 (744)
.+++.+ |-.+++..
T Consensus 70 ~viv~vKa~~~~~~l~~ 86 (151)
T PF02558_consen 70 LVIVAVKAYQLEQALQS 86 (151)
T ss_dssp EEEE-SSGGGHHHHHHH
T ss_pred EEEEEecccchHHHHHH
Confidence 999998 55555554
No 98
>PLN02366 spermidine synthase
Probab=86.72 E-value=2 Score=46.94 Aligned_cols=82 Identities=17% Similarity=0.184 Sum_probs=50.6
Q ss_pred CCCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCc-hHHHHH-hhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC
Q 004585 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPE-KEREKK-LTDGGLDISGLMNIKLVHREGNAVIRRHLESL 717 (744)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~-~er~~~-l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~ 717 (744)
..+++||++|+|.-+ +++++.++ ....+|+++|-++. -+.|++ +.+.+ ..+++-.+.+++||+.. .|++.
T Consensus 90 ~~pkrVLiIGgG~G~--~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~---~~~~dpRv~vi~~Da~~--~l~~~ 161 (308)
T PLN02366 90 PNPKKVLVVGGGDGG--VLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLA---VGFDDPRVNLHIGDGVE--FLKNA 161 (308)
T ss_pred CCCCeEEEEcCCccH--HHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhc---cccCCCceEEEEChHHH--HHhhc
Confidence 347899999999854 45666655 33468999997542 123333 21110 12455566678999854 45554
Q ss_pred CCCCcceEEEec
Q 004585 718 PLETFDSMSHWK 729 (744)
Q Consensus 718 ~I~~~DavIilT 729 (744)
.=+.||.|++=.
T Consensus 162 ~~~~yDvIi~D~ 173 (308)
T PLN02366 162 PEGTYDAIIVDS 173 (308)
T ss_pred cCCCCCEEEEcC
Confidence 346799999854
No 99
>PRK07326 short chain dehydrogenase; Provisional
Probab=86.24 E-value=3 Score=42.53 Aligned_cols=79 Identities=20% Similarity=0.154 Sum_probs=55.1
Q ss_pred cCeEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCc--
Q 004585 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (744)
Q Consensus 382 k~HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI-- 458 (744)
...++|.|. |..|..++++|...+ ..|++++++++..+...+++.. ..++.++.+|..+++.++++--
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g------~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~D~~~~~~~~~~~~~~ 76 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEG------YKVAITARDQKELEEAAAELNN---KGNVLGLAADVRDEADVQRAVDAI 76 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCC------CEEEEeeCCHHHHHHHHHHHhc---cCcEEEEEccCCCHHHHHHHHHHH
Confidence 367899986 557999999998643 5688888888766655443311 1457889999999988765321
Q ss_pred ----ccccEEEEecC
Q 004585 459 ----SKARAIIVLAS 469 (744)
Q Consensus 459 ----~~A~aVIiltd 469 (744)
...+.+|-.+.
T Consensus 77 ~~~~~~~d~vi~~ag 91 (237)
T PRK07326 77 VAAFGGLDVLIANAG 91 (237)
T ss_pred HHHcCCCCEEEECCC
Confidence 35788887664
No 100
>PLN02780 ketoreductase/ oxidoreductase
Probab=86.19 E-value=7.5 Score=42.45 Aligned_cols=62 Identities=16% Similarity=0.086 Sum_probs=41.7
Q ss_pred cCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCC
Q 004585 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLI 449 (744)
Q Consensus 382 k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~ 449 (744)
...++|.|.+. .|..++++|...+ ..|++++++++.+++..+++...+.+.++.++..|.++
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G------~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~ 115 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKG------LNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG 115 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC------CCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC
Confidence 45788889866 6889999998643 57888999988877665543211112345666666653
No 101
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=86.11 E-value=2.5 Score=45.22 Aligned_cols=70 Identities=26% Similarity=0.234 Sum_probs=55.8
Q ss_pred ecCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC
Q 004585 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS 457 (744)
Q Consensus 381 ~k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg 457 (744)
...+++|.|+.. .|..++++|... ++.++|+-+++++++++..++.... +..+.++.-|-++++++++.-
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~------g~~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~ 75 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARR------GYNLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLE 75 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHH
Confidence 356899999877 589999999875 4789999999999988877653322 456788999999999888754
No 102
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=86.10 E-value=1.3 Score=37.94 Aligned_cols=32 Identities=13% Similarity=0.164 Sum_probs=28.8
Q ss_pred eEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCC
Q 004585 644 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 678 (744)
Q Consensus 644 rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p 678 (744)
||+|+|+|.+|..++..|.+. |.+|++|+..+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~---g~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL---GKEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT---TSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHh---CcEEEEEeccc
Confidence 689999999999999999875 89999999753
No 103
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=86.06 E-value=1.8 Score=45.91 Aligned_cols=78 Identities=17% Similarity=0.171 Sum_probs=50.4
Q ss_pred eEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCC-
Q 004585 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET- 721 (744)
Q Consensus 644 rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~~- 721 (744)
+|+|.|+ |-+|..++++|-+. ..+.+|+.++......+.+.+.+. ...++ +..+.||.+|++.++++ ++.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~-~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~Dl~~~~~~~~~-~~~~ 72 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE-HPDAEVIVLDKLTYAGNLENLADL----EDNPR--YRFVKGDIGDRELVSRL-FTEH 72 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh-CCCCEEEEecCCCcchhhhhhhhh----ccCCC--cEEEEcCCcCHHHHHHH-Hhhc
Confidence 5899998 89999999999653 123688887642111122222210 01123 34578999999998775 444
Q ss_pred -cceEEEec
Q 004585 722 -FDSMSHWK 729 (744)
Q Consensus 722 -~DavIilT 729 (744)
.|.||-++
T Consensus 73 ~~d~vi~~a 81 (317)
T TIGR01181 73 QPDAVVHFA 81 (317)
T ss_pred CCCEEEEcc
Confidence 89999887
No 104
>PRK04148 hypothetical protein; Provisional
Probab=86.06 E-value=1.7 Score=41.85 Aligned_cols=70 Identities=14% Similarity=0.107 Sum_probs=53.3
Q ss_pred CeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCccccc
Q 004585 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (744)
Q Consensus 383 ~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~ 462 (744)
.+++++|.| .|..++..|.+. ++.|+.+|.+++.++.+.+ ..+.++.+|-.+++. +- -+.|+
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~------G~~ViaIDi~~~aV~~a~~--------~~~~~v~dDlf~p~~-~~--y~~a~ 79 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKES------GFDVIVIDINEKAVEKAKK--------LGLNAFVDDLFNPNL-EI--YKNAK 79 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHC------CCEEEEEECCHHHHHHHHH--------hCCeEEECcCCCCCH-HH--HhcCC
Confidence 589999999 788899999864 3799999999998877643 346788898887643 11 23688
Q ss_pred EEEEecCC
Q 004585 463 AIIVLASD 470 (744)
Q Consensus 463 aVIiltdd 470 (744)
.|...-..
T Consensus 80 liysirpp 87 (134)
T PRK04148 80 LIYSIRPP 87 (134)
T ss_pred EEEEeCCC
Confidence 88887753
No 105
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=86.04 E-value=10 Score=36.47 Aligned_cols=76 Identities=18% Similarity=0.154 Sum_probs=49.2
Q ss_pred CeEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhc--ccCCCcEEEEEeCCCCHHHHhccCcc
Q 004585 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF--DFMGTSVICRSGSPLILADLKKVSVS 459 (744)
Q Consensus 383 ~HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~--~~~~~~V~~i~Gd~t~~e~L~rAgI~ 459 (744)
++|.|+|. |.+|..++-.|...+ -..+++|+|.+++..+....++.+ .+...++ ..+. .+.++ ++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~----l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~--~i~~-~~~~~-----~~ 68 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQG----LADEIVLIDINEDKAEGEALDLSHASAPLPSPV--RITS-GDYEA-----LK 68 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTT----TSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEE--EEEE-SSGGG-----GT
T ss_pred CEEEEECCCChHHHHHHHHHHhCC----CCCceEEeccCcccceeeehhhhhhhhhccccc--cccc-ccccc-----cc
Confidence 57999999 999999999888753 246799999997655544333311 1112222 2222 33444 45
Q ss_pred cccEEEEecCC
Q 004585 460 KARAIIVLASD 470 (744)
Q Consensus 460 ~A~aVIiltdd 470 (744)
+||.||+++..
T Consensus 69 ~aDivvitag~ 79 (141)
T PF00056_consen 69 DADIVVITAGV 79 (141)
T ss_dssp TESEEEETTST
T ss_pred cccEEEEeccc
Confidence 78899998876
No 106
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.88 E-value=1.6 Score=49.85 Aligned_cols=69 Identities=19% Similarity=0.156 Sum_probs=48.7
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHH---HHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCC
Q 004585 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKERE---KKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP 718 (744)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~---~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~ 718 (744)
.++++|+|.|..|..+++.|.+. |.+|++++..+.+... +.+.+. ++. .+.+|..+. .
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~---G~~V~~~d~~~~~~~~~~~~~l~~~--------~~~--~~~~~~~~~------~ 65 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKL---GAKVILTDEKEEDQLKEALEELGEL--------GIE--LVLGEYPEE------F 65 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCCchHHHHHHHHHHHhc--------CCE--EEeCCcchh------H
Confidence 47899999999999999999864 9999999975322221 222221 233 467887772 2
Q ss_pred CCCcceEEEec
Q 004585 719 LETFDSMSHWK 729 (744)
Q Consensus 719 I~~~DavIilT 729 (744)
.+.+|.+|.-+
T Consensus 66 ~~~~d~vv~~~ 76 (450)
T PRK14106 66 LEGVDLVVVSP 76 (450)
T ss_pred hhcCCEEEECC
Confidence 56789998877
No 107
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=85.81 E-value=2.4 Score=46.20 Aligned_cols=77 Identities=14% Similarity=0.048 Sum_probs=52.8
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCC
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~~ 721 (744)
++|+|.|+ |-+|..+++.|.+. ..+.+|.+++..+ +....+.+ .+.+..+..+.||.+|.+.++++ ++.
T Consensus 5 k~vLVTGatG~IG~~l~~~L~~~-g~~~~V~~~~r~~--~~~~~~~~------~~~~~~~~~v~~Dl~d~~~l~~~-~~~ 74 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLEN-YNPKKIIIYSRDE--LKQWEMQQ------KFPAPCLRFFIGDVRDKERLTRA-LRG 74 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHh-CCCcEEEEEcCCh--hHHHHHHH------HhCCCcEEEEEccCCCHHHHHHH-Hhc
Confidence 57999998 78999999999763 1236888887542 22222222 12122344689999999999875 567
Q ss_pred cceEEEec
Q 004585 722 FDSMSHWK 729 (744)
Q Consensus 722 ~DavIilT 729 (744)
.|.+|-++
T Consensus 75 iD~Vih~A 82 (324)
T TIGR03589 75 VDYVVHAA 82 (324)
T ss_pred CCEEEECc
Confidence 89999876
No 108
>PRK07074 short chain dehydrogenase; Provisional
Probab=85.79 E-value=1.9 Score=44.77 Aligned_cols=76 Identities=13% Similarity=0.049 Sum_probs=54.6
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC----
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~---- 717 (744)
++++|.|+ |.+|..+++.|.+ .|.+|.++... .++.+.+.+ .+.+..+..+++|..|.+.++++
T Consensus 3 k~ilItGat~~iG~~la~~L~~---~g~~v~~~~r~--~~~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~~~ 71 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLA---AGDRVLALDID--AAALAAFAD------ALGDARFVPVACDLTDAASLAAALANA 71 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHH------HhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 57999998 6899999999976 48899998864 355555543 23333455689999999987542
Q ss_pred --CCCCcceEEEec
Q 004585 718 --PLETFDSMSHWK 729 (744)
Q Consensus 718 --~I~~~DavIilT 729 (744)
.....|.+|...
T Consensus 72 ~~~~~~~d~vi~~a 85 (257)
T PRK07074 72 AAERGPVDVLVANA 85 (257)
T ss_pred HHHcCCCCEEEECC
Confidence 123578888877
No 109
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=85.62 E-value=2.1 Score=48.04 Aligned_cols=72 Identities=11% Similarity=0.083 Sum_probs=50.9
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCC
Q 004585 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (744)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~~ 721 (744)
..+++|+|.|.+|..+++.+... |.+|++++.. .+|.+.+.+ .+.. . +..+..+.+.|.+. +.+
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~l---Ga~V~v~d~~--~~~~~~l~~------~~g~-~---v~~~~~~~~~l~~~-l~~ 230 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGL---GATVTILDIN--IDRLRQLDA------EFGG-R---IHTRYSNAYEIEDA-VKR 230 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHC---CCeEEEEECC--HHHHHHHHH------hcCc-e---eEeccCCHHHHHHH-Hcc
Confidence 45699999999999999999864 7889999864 467666653 1111 1 22344556666665 778
Q ss_pred cceEEEec
Q 004585 722 FDSMSHWK 729 (744)
Q Consensus 722 ~DavIilT 729 (744)
+|.+|..+
T Consensus 231 aDvVI~a~ 238 (370)
T TIGR00518 231 ADLLIGAV 238 (370)
T ss_pred CCEEEEcc
Confidence 99998765
No 110
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=85.05 E-value=6.7 Score=44.23 Aligned_cols=41 Identities=12% Similarity=0.157 Sum_probs=32.7
Q ss_pred cCCCHHHHHHHHHHhhhcCCCCCC---C-CCccChhhhhHHHHHH
Q 004585 310 SDSSFAEALWLSWTFVADSGNHAD---R-VGTGPRIVSVSISSGG 350 (744)
Q Consensus 310 e~~s~~dA~y~~~~tltTvGygd~---~-~t~~gRi~~v~lil~G 350 (744)
.+.++.++++-++..+.|+|.+-. + -+..++++.++.|+.|
T Consensus 345 ~~~~~~~~~fe~~Sa~~tvGls~g~~~~~l~~~~k~il~~~M~~G 389 (390)
T TIGR00933 345 SGYDFLTSLFEVVSAFGTVGLSVGLTTANLPDAGKLILIVLMFIG 389 (390)
T ss_pred cCCCHHHHHHHHHHHhcCcCCCCCCCcccCCHHHHHHHHHHHHcC
Confidence 479999999999999999997532 3 4567888888777765
No 111
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=85.01 E-value=4.3 Score=41.96 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=59.0
Q ss_pred cCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCcccc
Q 004585 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (744)
Q Consensus 382 k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (744)
...++|+|.|+++..=++.|...+ .+++|+.+.-.+++....++ ..+..+. +..+.+.+.. |
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~g-----a~v~Vvs~~~~~el~~~~~~-------~~i~~~~-~~~~~~~~~~-----~ 73 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKAG-----ADVTVVSPEFEPELKALIEE-------GKIKWIE-REFDAEDLDD-----A 73 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC-----CEEEEEcCCccHHHHHHHHh-------cCcchhh-cccChhhhcC-----c
Confidence 458999999999998888888764 24555555544666666553 2344555 5556666655 8
Q ss_pred cEEEEecCCCCCCcchHHHHHHHHHHhhhc
Q 004585 462 RAIIVLASDENADQSDARALRVVLSLTGVK 491 (744)
Q Consensus 462 ~aVIiltdd~~~~~sD~~NI~~~Lsar~l~ 491 (744)
..||+.|+| .+.|-.+...++..+
T Consensus 74 ~lviaAt~d------~~ln~~i~~~a~~~~ 97 (210)
T COG1648 74 FLVIAATDD------EELNERIAKAARERR 97 (210)
T ss_pred eEEEEeCCC------HHHHHHHHHHHHHhC
Confidence 899999964 466777777777754
No 112
>PRK08251 short chain dehydrogenase; Provisional
Probab=84.93 E-value=3.3 Score=42.54 Aligned_cols=81 Identities=21% Similarity=0.175 Sum_probs=55.0
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhcc-----
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA----- 456 (744)
..++|.|.+. .|..++++|.+.+ ..|++++++++..++...+......+.++.++.+|.++++.++++
T Consensus 3 k~vlItGas~giG~~la~~l~~~g------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 76 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKG------RDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFR 76 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHH
Confidence 4688998665 5889999998643 568888888776665544321111234688899999999877653
Q ss_pred -CcccccEEEEecC
Q 004585 457 -SVSKARAIIVLAS 469 (744)
Q Consensus 457 -gI~~A~aVIiltd 469 (744)
.....|.+|..+.
T Consensus 77 ~~~~~id~vi~~ag 90 (248)
T PRK08251 77 DELGGLDRVIVNAG 90 (248)
T ss_pred HHcCCCCEEEECCC
Confidence 1235677777664
No 113
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=84.90 E-value=2.4 Score=40.40 Aligned_cols=75 Identities=16% Similarity=0.225 Sum_probs=53.4
Q ss_pred ecCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCccc
Q 004585 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (744)
Q Consensus 381 ~k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (744)
...+++|+|.|..+..++..|...+- ..|.++.++.++.+.+.+.+ .+..+.++.- +++. ..+.+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~-----~~i~i~nRt~~ra~~l~~~~----~~~~~~~~~~-----~~~~-~~~~~ 75 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGA-----KEITIVNRTPERAEALAEEF----GGVNIEAIPL-----EDLE-EALQE 75 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTS-----SEEEEEESSHHHHHHHHHHH----TGCSEEEEEG-----GGHC-HHHHT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCC-----CEEEEEECCHHHHHHHHHHc----CccccceeeH-----HHHH-HHHhh
Confidence 45799999999999999999987642 46889999999888877654 2333444322 2333 23668
Q ss_pred ccEEEEecCC
Q 004585 461 ARAIIVLASD 470 (744)
Q Consensus 461 A~aVIiltdd 470 (744)
||.||..|+.
T Consensus 76 ~DivI~aT~~ 85 (135)
T PF01488_consen 76 ADIVINATPS 85 (135)
T ss_dssp ESEEEE-SST
T ss_pred CCeEEEecCC
Confidence 9999999865
No 114
>PRK08265 short chain dehydrogenase; Provisional
Probab=84.86 E-value=3.1 Score=43.55 Aligned_cols=77 Identities=14% Similarity=0.120 Sum_probs=54.5
Q ss_pred cCeEEEEccc-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC---
Q 004585 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (744)
Q Consensus 382 k~HIII~G~g-~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (744)
.+.++|.|.+ ..|..++++|.+.+ ..|++++++++..++..++. +.++.++.+|.++++.++++-
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G------~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~ 74 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAG------ARVAIVDIDADNGAAVAASL-----GERARFIATDITDDAAIERAVATV 74 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHh-----CCeeEEEEecCCCHHHHHHHHHHH
Confidence 3578888874 46999999998754 67888898887666654432 345788999999998876641
Q ss_pred ---cccccEEEEecC
Q 004585 458 ---VSKARAIIVLAS 469 (744)
Q Consensus 458 ---I~~A~aVIiltd 469 (744)
....|.+|-.+.
T Consensus 75 ~~~~g~id~lv~~ag 89 (261)
T PRK08265 75 VARFGRVDILVNLAC 89 (261)
T ss_pred HHHhCCCCEEEECCC
Confidence 124577766553
No 115
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=84.76 E-value=9.7 Score=42.24 Aligned_cols=97 Identities=19% Similarity=0.135 Sum_probs=59.1
Q ss_pred ecCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHH---------------------HHHHHhhhccc-CCC
Q 004585 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEM---------------------EMDIAKLEFDF-MGT 438 (744)
Q Consensus 381 ~k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~l---------------------e~~l~~~~~~~-~~~ 438 (744)
.+-+|+|+|.|..|..+++.|...+. ..+.++|.|.-+. +.+.+++. .. ...
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGv-----g~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~-~inp~v 96 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGV-----GKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLE-EINSDV 96 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHH-HHCCCc
Confidence 45699999999999999999987652 3688888874111 11111110 01 123
Q ss_pred cEEEEEeCCCCHHHHhccCcccccEEEEecCCCCCCcchHHHHHHHHHHhhhc
Q 004585 439 SVICRSGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVK 491 (744)
Q Consensus 439 ~V~~i~Gd~t~~e~L~rAgI~~A~aVIiltdd~~~~~sD~~NI~~~Lsar~l~ 491 (744)
++..+.++.+. +.+... ++++|.||..+|+ .+......-.+++.+
T Consensus 97 ~v~~~~~~~~~-~~~~~~-~~~~DlVid~~Dn------~~~r~~ln~~~~~~~ 141 (339)
T PRK07688 97 RVEAIVQDVTA-EELEEL-VTGVDLIIDATDN------FETRFIVNDAAQKYG 141 (339)
T ss_pred EEEEEeccCCH-HHHHHH-HcCCCEEEEcCCC------HHHHHHHHHHHHHhC
Confidence 45566666543 333333 6789999999854 455555555555543
No 116
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=84.46 E-value=4.4 Score=44.22 Aligned_cols=103 Identities=16% Similarity=0.163 Sum_probs=64.9
Q ss_pred ecCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCccc
Q 004585 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (744)
Q Consensus 381 ~k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (744)
...+|+|+|.|..|..+++.|...+ ...|++++++++..+.+.+++ +. .++ +.+++.++ +.+
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g-----~~~V~v~~r~~~ra~~la~~~-----g~--~~~-----~~~~~~~~-l~~ 238 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKG-----VAEITIANRTYERAEELAKEL-----GG--NAV-----PLDELLEL-LNE 238 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcC-----CCEEEEEeCCHHHHHHHHHHc-----CC--eEE-----eHHHHHHH-Hhc
Confidence 3468999999999999999987632 357888999988776665542 11 111 23445544 667
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCccEEEEecCCCCHH
Q 004585 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEP 509 (744)
Q Consensus 461 A~aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d~e~~~ 509 (744)
||.||..+.... ..++...+...... +..+++-+..|.+.+
T Consensus 239 aDvVi~at~~~~-----~~~~~~~~~~~~~~---~~~~viDlavPrdi~ 279 (311)
T cd05213 239 ADVVISATGAPH-----YAKIVERAMKKRSG---KPRLIVDLAVPRDIE 279 (311)
T ss_pred CCEEEECCCCCc-----hHHHHHHHHhhCCC---CCeEEEEeCCCCCCc
Confidence 999999996521 12333322222111 246888888877644
No 117
>PLN02823 spermine synthase
Probab=84.38 E-value=3.9 Score=45.29 Aligned_cols=81 Identities=14% Similarity=0.034 Sum_probs=49.4
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcC-CCCcCCCCCceEEEEEcCcCCHhhHhcCCC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDG-GLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~-g~~~~~L~n~~V~~i~GD~td~~~L~e~~I 719 (744)
.+++|||+|+|.-+ +++++-++ .+..+|+++|.+| +-.+...+. +.....+.+-.+.++.||+. +.|++. -
T Consensus 103 ~pk~VLiiGgG~G~--~~re~l~~-~~~~~v~~VEiD~--~vv~lar~~~~~~~~~~~dprv~v~~~Da~--~~L~~~-~ 174 (336)
T PLN02823 103 NPKTVFIMGGGEGS--TAREVLRH-KTVEKVVMCDIDQ--EVVDFCRKHLTVNREAFCDKRLELIINDAR--AELEKR-D 174 (336)
T ss_pred CCCEEEEECCCchH--HHHHHHhC-CCCCeEEEEECCH--HHHHHHHHhcccccccccCCceEEEEChhH--HHHhhC-C
Confidence 56899999998543 34444443 2346899999754 333332221 11112345566777899987 466553 4
Q ss_pred CCcceEEEec
Q 004585 720 ETFDSMSHWK 729 (744)
Q Consensus 720 ~~~DavIilT 729 (744)
++||.|++=.
T Consensus 175 ~~yDvIi~D~ 184 (336)
T PLN02823 175 EKFDVIIGDL 184 (336)
T ss_pred CCccEEEecC
Confidence 7899999854
No 118
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=84.28 E-value=2.3 Score=45.56 Aligned_cols=70 Identities=17% Similarity=0.173 Sum_probs=51.6
Q ss_pred eEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCCc
Q 004585 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETF 722 (744)
Q Consensus 644 rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~~~ 722 (744)
+|+|.|+ |-+|..+++.|.+ .|.+|+.++..+. .... +....+..+.||.+|.+.++++ ++..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~---~g~~V~~~~r~~~--~~~~----------~~~~~~~~~~~D~~~~~~l~~~-~~~~ 65 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLE---QGEEVRVLVRPTS--DRRN----------LEGLDVEIVEGDLRDPASLRKA-VAGC 65 (328)
T ss_pred eEEEECCccchhHHHHHHHHH---CCCEEEEEEecCc--cccc----------cccCCceEEEeeCCCHHHHHHH-HhCC
Confidence 6899997 8999999999976 4889999986532 1111 1222344689999999988875 5677
Q ss_pred ceEEEec
Q 004585 723 DSMSHWK 729 (744)
Q Consensus 723 DavIilT 729 (744)
|.++-+.
T Consensus 66 d~vi~~a 72 (328)
T TIGR03466 66 RALFHVA 72 (328)
T ss_pred CEEEEec
Confidence 8888765
No 119
>PLN02214 cinnamoyl-CoA reductase
Probab=84.23 E-value=3.3 Score=45.52 Aligned_cols=79 Identities=13% Similarity=0.125 Sum_probs=53.5
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~ 720 (744)
.++|+|.|+ |-+|..+++.|.+ .|.+|+.+...++......+.+. . ....+ +.++.||.+|.+.++++ +.
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~---~G~~V~~~~r~~~~~~~~~~~~~--~-~~~~~--~~~~~~Dl~d~~~~~~~-~~ 80 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLE---RGYTVKGTVRNPDDPKNTHLREL--E-GGKER--LILCKADLQDYEALKAA-ID 80 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH---CcCEEEEEeCCchhhhHHHHHHh--h-CCCCc--EEEEecCcCChHHHHHH-Hh
Confidence 458999999 8999999999976 48899888754322111111110 0 00112 44578999999988775 56
Q ss_pred CcceEEEec
Q 004585 721 TFDSMSHWK 729 (744)
Q Consensus 721 ~~DavIilT 729 (744)
.+|.|+-++
T Consensus 81 ~~d~Vih~A 89 (342)
T PLN02214 81 GCDGVFHTA 89 (342)
T ss_pred cCCEEEEec
Confidence 789999887
No 120
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=84.20 E-value=3.6 Score=42.86 Aligned_cols=74 Identities=12% Similarity=0.033 Sum_probs=50.4
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCC-HhhHhcCCC
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVI-RRHLESLPL 719 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td-~~~L~e~~I 719 (744)
.++|+|+|. |.+|..++++|.+ .|.+|+.+...+ ++.+.+.. ...+ +.++.||.+| .+.+.+. +
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~---~g~~V~~~~R~~--~~~~~~~~------~~~~--~~~~~~Dl~d~~~~l~~~-~ 82 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLA---KGFAVKAGVRDV--DKAKTSLP------QDPS--LQIVRADVTEGSDKLVEA-I 82 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHh---CCCEEEEEecCH--HHHHHhcc------cCCc--eEEEEeeCCCCHHHHHHH-h
Confidence 468999997 8999999999975 488888877543 44333221 1123 4458899998 4555443 3
Q ss_pred -CCcceEEEec
Q 004585 720 -ETFDSMSHWK 729 (744)
Q Consensus 720 -~~~DavIilT 729 (744)
..+|.++..+
T Consensus 83 ~~~~d~vi~~~ 93 (251)
T PLN00141 83 GDDSDAVICAT 93 (251)
T ss_pred hcCCCEEEECC
Confidence 4789999876
No 121
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=84.14 E-value=5.3 Score=36.19 Aligned_cols=79 Identities=11% Similarity=0.062 Sum_probs=49.2
Q ss_pred cCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCcccc
Q 004585 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (744)
Q Consensus 382 k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (744)
..+++|+|.|+.+..=++.|...+ ..|.++..+.+..+ + .+.+..-. . + ..++.+
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~g------A~v~vis~~~~~~~----~--------~i~~~~~~-~-----~-~~l~~~ 61 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAG------AKVTVISPEIEFSE----G--------LIQLIRRE-F-----E-EDLDGA 61 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCT------BEEEEEESSEHHHH----T--------SCEEEESS-------G-GGCTTE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC------CEEEEECCchhhhh----h--------HHHHHhhh-H-----H-HHHhhh
Confidence 468999999999999999988654 45666655542222 1 12233222 2 2 337778
Q ss_pred cEEEEecCCCCCCcchHHHHHHHHHHhhhc
Q 004585 462 RAIIVLASDENADQSDARALRVVLSLTGVK 491 (744)
Q Consensus 462 ~aVIiltdd~~~~~sD~~NI~~~Lsar~l~ 491 (744)
+.|++.+++ .+.|-.++..+|+.+
T Consensus 62 ~lV~~at~d------~~~n~~i~~~a~~~~ 85 (103)
T PF13241_consen 62 DLVFAATDD------PELNEAIYADARARG 85 (103)
T ss_dssp SEEEE-SS-------HHHHHHHHHHHHHTT
T ss_pred eEEEecCCC------HHHHHHHHHHHhhCC
Confidence 999998853 667777777777653
No 122
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=84.10 E-value=7.8 Score=41.40 Aligned_cols=40 Identities=28% Similarity=0.155 Sum_probs=32.6
Q ss_pred CeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHH
Q 004585 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDI 428 (744)
Q Consensus 383 ~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l 428 (744)
++|.|+|.|..|..++..|...+ +.|.+++++++.++.+.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g------~~V~~~~r~~~~~~~~~ 40 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAG------HDVTLVARRGAHLDALN 40 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC------CeEEEEECChHHHHHHH
Confidence 37999999999999999998653 68999998777766553
No 123
>PRK06194 hypothetical protein; Provisional
Probab=84.04 E-value=3.4 Score=43.58 Aligned_cols=80 Identities=15% Similarity=0.115 Sum_probs=56.5
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCc---
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI--- 458 (744)
.+++|.|.+. .|..++++|...+ ..|++++++.+..++..++... .+.++.++.+|.++.+.++++--
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G------~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~d~~~~~~~~~~~~ 78 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALG------MKLVLADVQQDALDRAVAELRA--QGAEVLGVRTDVSDAAQVEALADAAL 78 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCC------CEEEEEeCChHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 5789999755 6889999998643 6788888887666655443211 13467889999999998877521
Q ss_pred ---ccccEEEEecCC
Q 004585 459 ---SKARAIIVLASD 470 (744)
Q Consensus 459 ---~~A~aVIiltdd 470 (744)
...|.+|-++..
T Consensus 79 ~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 79 ERFGAVHLLFNNAGV 93 (287)
T ss_pred HHcCCCCEEEECCCC
Confidence 235888887754
No 124
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=84.00 E-value=3.7 Score=48.54 Aligned_cols=83 Identities=8% Similarity=0.038 Sum_probs=58.0
Q ss_pred ecCeEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhc-cc------CCCcEEEEEeCCCCHHH
Q 004585 381 EKNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF-DF------MGTSVICRSGSPLILAD 452 (744)
Q Consensus 381 ~k~HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~-~~------~~~~V~~i~Gd~t~~e~ 452 (744)
....++|.|+ |..|..++++|...+ +.|+++.++.+..+.+.+.+.. .. ...++.++.||.++.+.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G------~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLG------FRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC------CeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 3457888987 557999999998653 6788888887766554332210 00 01357899999999999
Q ss_pred HhccCcccccEEEEecCC
Q 004585 453 LKKVSVSKARAIIVLASD 470 (744)
Q Consensus 453 L~rAgI~~A~aVIiltdd 470 (744)
++++ +..+|.||.+...
T Consensus 153 I~~a-LggiDiVVn~AG~ 169 (576)
T PLN03209 153 IGPA-LGNASVVICCIGA 169 (576)
T ss_pred HHHH-hcCCCEEEEcccc
Confidence 8764 5678988887653
No 125
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=83.87 E-value=4.5 Score=44.91 Aligned_cols=82 Identities=13% Similarity=0.158 Sum_probs=56.4
Q ss_pred CCCCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCC-----CCcCCCCCceEEEEEcCcCCHhh
Q 004585 639 PKYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGG-----LDISGLMNIKLVHREGNAVIRRH 713 (744)
Q Consensus 639 ~~~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g-----~~~~~L~n~~V~~i~GD~td~~~ 713 (744)
.+..+++||+|||+- . .+++|.+| +.--+|+.+|-+| |.-+++.+. ++++.+.+..|.+++.|+- ..
T Consensus 287 ~~~a~~vLvlGGGDG-L-AlRellky-P~~~qI~lVdLDP---~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf--~w 358 (508)
T COG4262 287 VRGARSVLVLGGGDG-L-ALRELLKY-PQVEQITLVDLDP---RMIELASHATVLRALNQGSFSDPRVTVVNDDAF--QW 358 (508)
T ss_pred ccccceEEEEcCCch-H-HHHHHHhC-CCcceEEEEecCH---HHHHHhhhhhHhhhhccCCccCCeeEEEeccHH--HH
Confidence 366789999998875 2 46677776 2256899999875 233333211 3456788888888888874 46
Q ss_pred HhcCCCCCcceEEEec
Q 004585 714 LESLPLETFDSMSHWK 729 (744)
Q Consensus 714 L~e~~I~~~DavIilT 729 (744)
|+... +.||++|+=-
T Consensus 359 lr~a~-~~fD~vIVDl 373 (508)
T COG4262 359 LRTAA-DMFDVVIVDL 373 (508)
T ss_pred HHhhc-ccccEEEEeC
Confidence 76654 4999998855
No 126
>PRK08267 short chain dehydrogenase; Provisional
Probab=83.85 E-value=3.7 Score=42.64 Aligned_cols=78 Identities=12% Similarity=-0.045 Sum_probs=56.5
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhcc--Cc-
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--SV- 458 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA--gI- 458 (744)
.+++|.|++. .|..++++|...+ ..|++++++++.++++.... .+.++.++.+|.++.+.++++ ++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G------~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~v~~~~~~~~ 71 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEG------WRVGAYDINEAGLAALAAEL----GAGNAWTGALDVTDRAAWDAALADFA 71 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCC------CeEEEEeCCHHHHHHHHHHh----cCCceEEEEecCCCHHHHHHHHHHHH
Confidence 3689999866 5889999998643 67888888887776654432 235688999999999988764 22
Q ss_pred ----ccccEEEEecCC
Q 004585 459 ----SKARAIIVLASD 470 (744)
Q Consensus 459 ----~~A~aVIiltdd 470 (744)
.+-|.+|-++..
T Consensus 72 ~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 72 AATGGRLDVLFNNAGI 87 (260)
T ss_pred HHcCCCCCEEEECCCC
Confidence 234888877654
No 127
>PLN00198 anthocyanidin reductase; Provisional
Probab=83.82 E-value=4.1 Score=44.38 Aligned_cols=78 Identities=17% Similarity=0.083 Sum_probs=51.5
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHH-HHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCC
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKER-EKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er-~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I 719 (744)
.++|+|.|+ |-+|..+++.|.+ .|.+|.++..++.... ...+.. + ....+ +.+++||.+|++.+++. +
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~--~--~~~~~--~~~~~~Dl~d~~~~~~~-~ 78 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQ---KGYAVNTTVRDPENQKKIAHLRA--L--QELGD--LKIFGADLTDEESFEAP-I 78 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHH---CCCEEEEEECCCCCHHHHHHHHh--c--CCCCc--eEEEEcCCCChHHHHHH-H
Confidence 568999996 6799999999976 3888876654332111 111111 0 01123 44589999999988775 4
Q ss_pred CCcceEEEec
Q 004585 720 ETFDSMSHWK 729 (744)
Q Consensus 720 ~~~DavIilT 729 (744)
..+|.|+-++
T Consensus 79 ~~~d~vih~A 88 (338)
T PLN00198 79 AGCDLVFHVA 88 (338)
T ss_pred hcCCEEEEeC
Confidence 5789999777
No 128
>PRK09291 short chain dehydrogenase; Provisional
Probab=83.55 E-value=5.7 Score=41.00 Aligned_cols=79 Identities=14% Similarity=-0.011 Sum_probs=55.6
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCcccc
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (744)
.+++|.|.+. .|..++++|...+ ..|++..++++..+.+.+... ..+.++.++.+|.++++.++++--...
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G------~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~i 74 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKG------HNVIAGVQIAPQVTALRAEAA--RRGLALRVEKLDLTDAIDRAQAAEWDV 74 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHH--hcCCcceEEEeeCCCHHHHHHHhcCCC
Confidence 4789999754 6889999998653 567777777655444332211 113458889999999999988744478
Q ss_pred cEEEEecC
Q 004585 462 RAIIVLAS 469 (744)
Q Consensus 462 ~aVIiltd 469 (744)
|.+|-.+.
T Consensus 75 d~vi~~ag 82 (257)
T PRK09291 75 DVLLNNAG 82 (257)
T ss_pred CEEEECCC
Confidence 88888765
No 129
>PRK07831 short chain dehydrogenase; Provisional
Probab=83.41 E-value=4.1 Score=42.46 Aligned_cols=82 Identities=9% Similarity=0.029 Sum_probs=53.4
Q ss_pred cCeEEEEcc-c-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC--
Q 004585 382 KNHILILGW-S-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (744)
Q Consensus 382 k~HIII~G~-g-~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg-- 457 (744)
...++|.|. | ..|..+++.|...+ ..|++++++++.++...+++...+...++.++.+|.++++.++++-
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 90 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEG------ARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDA 90 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHH
Confidence 467999997 4 48999999998653 5688888887666655433211111235778888888887766531
Q ss_pred ----cccccEEEEecC
Q 004585 458 ----VSKARAIIVLAS 469 (744)
Q Consensus 458 ----I~~A~aVIiltd 469 (744)
....|.+|-...
T Consensus 91 ~~~~~g~id~li~~ag 106 (262)
T PRK07831 91 AVERLGRLDVLVNNAG 106 (262)
T ss_pred HHHHcCCCCEEEECCC
Confidence 124566666654
No 130
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=83.22 E-value=2.7 Score=40.25 Aligned_cols=72 Identities=15% Similarity=0.147 Sum_probs=47.0
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~ 720 (744)
..++++|+|.|..|..+++.|.+. .+..|++++.+ .++.+.+++ .+.... +..+..+.+ +. ++
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~--g~~~v~v~~r~--~~~~~~~~~------~~~~~~---~~~~~~~~~---~~-~~ 80 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAEL--GAAKIVIVNRT--LEKAKALAE------RFGELG---IAIAYLDLE---EL-LA 80 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC--CCCEEEEEcCC--HHHHHHHHH------HHhhcc---cceeecchh---hc-cc
Confidence 457899999999999999999763 14789999864 466666554 111100 011223332 22 78
Q ss_pred CcceEEEec
Q 004585 721 TFDSMSHWK 729 (744)
Q Consensus 721 ~~DavIilT 729 (744)
++|.+|..+
T Consensus 81 ~~Dvvi~~~ 89 (155)
T cd01065 81 EADLIINTT 89 (155)
T ss_pred cCCEEEeCc
Confidence 899999988
No 131
>PRK06949 short chain dehydrogenase; Provisional
Probab=83.21 E-value=5.2 Score=41.28 Aligned_cols=81 Identities=22% Similarity=0.138 Sum_probs=55.8
Q ss_pred ecCeEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCc-
Q 004585 381 EKNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV- 458 (744)
Q Consensus 381 ~k~HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI- 458 (744)
...+++|.|. |..|..++++|...+ ..|+++.++++..+....++. -.+.++.++.+|.+++++++++--
T Consensus 8 ~~k~ilItGasg~IG~~~a~~l~~~G------~~Vi~~~r~~~~~~~~~~~l~--~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (258)
T PRK06949 8 EGKVALVTGASSGLGARFAQVLAQAG------AKVVLASRRVERLKELRAEIE--AEGGAAHVVSLDVTDYQSIKAAVAH 79 (258)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHH--hcCCcEEEEEecCCCHHHHHHHHHH
Confidence 3468899987 447999999998643 568888888877665544321 112357889999999988776421
Q ss_pred -----ccccEEEEecC
Q 004585 459 -----SKARAIIVLAS 469 (744)
Q Consensus 459 -----~~A~aVIiltd 469 (744)
...|.+|-.+.
T Consensus 80 ~~~~~~~~d~li~~ag 95 (258)
T PRK06949 80 AETEAGTIDILVNNSG 95 (258)
T ss_pred HHHhcCCCCEEEECCC
Confidence 24677777665
No 132
>PRK06101 short chain dehydrogenase; Provisional
Probab=82.98 E-value=3.6 Score=42.36 Aligned_cols=62 Identities=15% Similarity=0.085 Sum_probs=46.2
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhcc
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA 456 (744)
+.++|.|.+. .|..++++|... |..|++++++++..+++.+. ..++.++.+|.++++.++++
T Consensus 2 ~~vlItGas~giG~~la~~L~~~------G~~V~~~~r~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~ 64 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQ------GWQVIACGRNQSVLDELHTQ------SANIFTLAFDVTDHPGTKAA 64 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhC------CCEEEEEECCHHHHHHHHHh------cCCCeEEEeeCCCHHHHHHH
Confidence 3588998755 588999999864 36788899988776654331 23577899999999988775
No 133
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=82.82 E-value=4.4 Score=41.89 Aligned_cols=76 Identities=12% Similarity=0.098 Sum_probs=54.1
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhcc-----
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA----- 456 (744)
+.++|.|.+. .|..++++|...+ ..|++++++++.++...+.. +.++.++.+|.++.+.++++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G------~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~i~~~~~~~~ 69 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG------HKVIATGRRQERLQELKDEL-----GDNLYIAQLDVRNRAAIEEMLASLP 69 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHHh-----ccceEEEEecCCCHHHHHHHHHHHH
Confidence 3688998755 6889999998643 67888898887766654322 23578899999999887653
Q ss_pred -CcccccEEEEecC
Q 004585 457 -SVSKARAIIVLAS 469 (744)
Q Consensus 457 -gI~~A~aVIiltd 469 (744)
.....|.+|..+.
T Consensus 70 ~~~~~id~vi~~ag 83 (248)
T PRK10538 70 AEWRNIDVLVNNAG 83 (248)
T ss_pred HHcCCCCEEEECCC
Confidence 1135788877654
No 134
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=82.79 E-value=4.9 Score=44.13 Aligned_cols=81 Identities=14% Similarity=0.037 Sum_probs=57.1
Q ss_pred eecCeEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCc
Q 004585 380 IEKNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (744)
Q Consensus 380 ~~k~HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI 458 (744)
...++|+|.|. |-.|..++++|...+ ..|++++++++..+....... .+.++.++.||..+.+.++++ +
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G------~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~-~ 77 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRG------YTVHATLRDPAKSLHLLSKWK---EGDRLRLFRADLQEEGSFDEA-V 77 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC------CEEEEEeCChHHHHHHHHhhc---cCCeEEEEECCCCCHHHHHHH-H
Confidence 35668999996 557999999998653 567776766654443332211 124588899999999988776 4
Q ss_pred ccccEEEEecCC
Q 004585 459 SKARAIIVLASD 470 (744)
Q Consensus 459 ~~A~aVIiltdd 470 (744)
++.|.||-++..
T Consensus 78 ~~~d~Vih~A~~ 89 (353)
T PLN02896 78 KGCDGVFHVAAS 89 (353)
T ss_pred cCCCEEEECCcc
Confidence 567888888865
No 135
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.76 E-value=4.5 Score=41.44 Aligned_cols=79 Identities=18% Similarity=0.186 Sum_probs=56.6
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC----
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (744)
..++|.|.+. .|..++++|.+.+ +.|++++++++..+....++.. +.++.++.+|.++++.++++-
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G------~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~ 76 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEG------ARVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAAL 76 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHH
Confidence 4788998754 6899999998653 5688999988776655443211 345788999999999987651
Q ss_pred --cccccEEEEecCC
Q 004585 458 --VSKARAIIVLASD 470 (744)
Q Consensus 458 --I~~A~aVIiltdd 470 (744)
....|.||-.+..
T Consensus 77 ~~~~~~d~vi~~ag~ 91 (251)
T PRK07231 77 ERFGSVDILVNNAGT 91 (251)
T ss_pred HHhCCCCEEEECCCC
Confidence 2356888877653
No 136
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=82.69 E-value=2.9 Score=45.43 Aligned_cols=75 Identities=20% Similarity=0.214 Sum_probs=48.8
Q ss_pred eEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcc--cCCCcEEEEEeCCCCHHHHhccCcccc
Q 004585 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFD--FMGTSVICRSGSPLILADLKKVSVSKA 461 (744)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~--~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (744)
+|.|+|.|..|..++..|...+ ..+.++++|.+++..+....++... +....+.+. + .+.++ +.+|
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g----~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~-~--~~~~~-----l~~a 69 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQG----IADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK-A--GDYSD-----CKDA 69 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcC----CCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE-c--CCHHH-----hCCC
Confidence 7999999999999999987643 1257999999887666554433111 111222222 2 23333 4689
Q ss_pred cEEEEecCC
Q 004585 462 RAIIVLASD 470 (744)
Q Consensus 462 ~aVIiltdd 470 (744)
|.||+.++.
T Consensus 70 DIVIitag~ 78 (306)
T cd05291 70 DIVVITAGA 78 (306)
T ss_pred CEEEEccCC
Confidence 999999986
No 137
>PRK12829 short chain dehydrogenase; Provisional
Probab=82.65 E-value=5.1 Score=41.45 Aligned_cols=79 Identities=15% Similarity=0.162 Sum_probs=56.0
Q ss_pred ecCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC--
Q 004585 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (744)
Q Consensus 381 ~k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg-- 457 (744)
...+++|.|.+. .|..++++|.+.+ +.|+++.++++..+...++. .+.++.++.+|.++++.++++-
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g------~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~ 79 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAG------ARVHVCDVSEAALAATAARL----PGAKVTATVADVADPAQVERVFDT 79 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHH----hcCceEEEEccCCCHHHHHHHHHH
Confidence 346899999755 6889999998643 57888888877665544332 1225688999999999877641
Q ss_pred ----cccccEEEEecC
Q 004585 458 ----VSKARAIIVLAS 469 (744)
Q Consensus 458 ----I~~A~aVIiltd 469 (744)
..+.|.||-.+.
T Consensus 80 ~~~~~~~~d~vi~~ag 95 (264)
T PRK12829 80 AVERFGGLDVLVNNAG 95 (264)
T ss_pred HHHHhCCCCEEEECCC
Confidence 236788887764
No 138
>PLN02583 cinnamoyl-CoA reductase
Probab=82.48 E-value=4.5 Score=43.38 Aligned_cols=78 Identities=8% Similarity=-0.053 Sum_probs=51.1
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHH-HHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCC
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKERE-KKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~-~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I 719 (744)
.++|+|.|+ |-+|..++++|.+ .|.+|+++...+.++.. +.+.+ +. . .+..+..+.+|.+|.+.+.+. +
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~---~G~~V~~~~R~~~~~~~~~~~~~--l~--~-~~~~~~~~~~Dl~d~~~~~~~-l 76 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLS---RGYTVHAAVQKNGETEIEKEIRG--LS--C-EEERLKVFDVDPLDYHSILDA-L 76 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHh---CCCEEEEEEcCchhhhHHHHHHh--cc--c-CCCceEEEEecCCCHHHHHHH-H
Confidence 458999998 7899999999975 48999987653322222 11221 00 0 011244578999999988765 5
Q ss_pred CCcceEEEe
Q 004585 720 ETFDSMSHW 728 (744)
Q Consensus 720 ~~~DavIil 728 (744)
..+|.++.+
T Consensus 77 ~~~d~v~~~ 85 (297)
T PLN02583 77 KGCSGLFCC 85 (297)
T ss_pred cCCCEEEEe
Confidence 678887743
No 139
>PRK07024 short chain dehydrogenase; Provisional
Probab=82.42 E-value=4.4 Score=42.14 Aligned_cols=78 Identities=17% Similarity=0.110 Sum_probs=53.9
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC----
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (744)
++++|.|.+. .|..++++|...+ ..|++++++++.+++..++.. ..+ ++.++.+|.++++.++++-
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G------~~v~~~~r~~~~~~~~~~~~~--~~~-~~~~~~~Dl~~~~~i~~~~~~~~ 73 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQG------ATLGLVARRTDALQAFAARLP--KAA-RVSVYAADVRDADALAAAAADFI 73 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHhcc--cCC-eeEEEEcCCCCHHHHHHHHHHHH
Confidence 5899999765 6899999998643 578888988877666544321 112 6888999999988876641
Q ss_pred --cccccEEEEecC
Q 004585 458 --VSKARAIIVLAS 469 (744)
Q Consensus 458 --I~~A~aVIiltd 469 (744)
...-|.+|-.+.
T Consensus 74 ~~~g~id~lv~~ag 87 (257)
T PRK07024 74 AAHGLPDVVIANAG 87 (257)
T ss_pred HhCCCCCEEEECCC
Confidence 123577776654
No 140
>PLN02427 UDP-apiose/xylose synthase
Probab=82.25 E-value=5.6 Score=44.30 Aligned_cols=82 Identities=15% Similarity=0.009 Sum_probs=55.7
Q ss_pred CCCceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCC
Q 004585 640 KYPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP 718 (744)
Q Consensus 640 ~~~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~ 718 (744)
..+.+|||.|+ |-+|..+++.|-+. .|.+|..++..+ ++.+.+.+.+.. ....+ +.++.||.+|.+.++++
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~--~g~~V~~l~r~~--~~~~~l~~~~~~-~~~~~--~~~~~~Dl~d~~~l~~~- 83 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTE--TPHKVLALDVYN--DKIKHLLEPDTV-PWSGR--IQFHRINIKHDSRLEGL- 83 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhc--CCCEEEEEecCc--hhhhhhhccccc-cCCCC--eEEEEcCCCChHHHHHH-
Confidence 34568999998 89999999999753 257898887543 333333321100 00123 55689999999998876
Q ss_pred CCCcceEEEec
Q 004585 719 LETFDSMSHWK 729 (744)
Q Consensus 719 I~~~DavIilT 729 (744)
+..+|.||=++
T Consensus 84 ~~~~d~ViHlA 94 (386)
T PLN02427 84 IKMADLTINLA 94 (386)
T ss_pred hhcCCEEEEcc
Confidence 56789998776
No 141
>PRK05854 short chain dehydrogenase; Provisional
Probab=82.09 E-value=4.8 Score=43.61 Aligned_cols=82 Identities=21% Similarity=0.175 Sum_probs=55.9
Q ss_pred cCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC---
Q 004585 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (744)
Q Consensus 382 k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (744)
...+||.|.+. .|..++++|...+ ..|+++.++.+..++..+++.....+.++.++..|.++.+..+++-
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~G------~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~ 87 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAAG------AEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQL 87 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHH
Confidence 35788889876 5889999998653 5788888887776665554321112346788999999988877542
Q ss_pred ---cccccEEEEecC
Q 004585 458 ---VSKARAIIVLAS 469 (744)
Q Consensus 458 ---I~~A~aVIiltd 469 (744)
...-|.+|-.+.
T Consensus 88 ~~~~~~iD~li~nAG 102 (313)
T PRK05854 88 RAEGRPIHLLINNAG 102 (313)
T ss_pred HHhCCCccEEEECCc
Confidence 124577776554
No 142
>PRK06138 short chain dehydrogenase; Provisional
Probab=81.96 E-value=5.3 Score=41.02 Aligned_cols=79 Identities=19% Similarity=0.162 Sum_probs=55.9
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC----
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (744)
.+++|.|.+. .|..++++|.+.+ +.|+++.++.+..+...++.. .+..+.++.+|.++++.++++-
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G------~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~i~ 76 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREG------ARVVVADRDAEAAERVAAAIA---AGGRAFARQGDVGSAEAVEALVDFVA 76 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCC------CeEEEecCCHHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 4789999865 6899999998643 678888888766655444321 2345788999999999887641
Q ss_pred --cccccEEEEecCC
Q 004585 458 --VSKARAIIVLASD 470 (744)
Q Consensus 458 --I~~A~aVIiltdd 470 (744)
..+.|.+|-.+..
T Consensus 77 ~~~~~id~vi~~ag~ 91 (252)
T PRK06138 77 ARWGRLDVLVNNAGF 91 (252)
T ss_pred HHcCCCCEEEECCCC
Confidence 1366888777653
No 143
>PRK06194 hypothetical protein; Provisional
Probab=81.79 E-value=2.5 Score=44.61 Aligned_cols=78 Identities=9% Similarity=0.008 Sum_probs=52.7
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC----
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~---- 717 (744)
+++||.|+ |.+|..++++|.+ .|..|.+++..+ ++.+.+.+. + .-.+..+..+.+|.+|.+.++++
T Consensus 7 k~vlVtGasggIG~~la~~l~~---~G~~V~~~~r~~--~~~~~~~~~-~---~~~~~~~~~~~~D~~d~~~~~~~~~~~ 77 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAA---LGMKLVLADVQQ--DALDRAVAE-L---RAQGAEVLGVRTDVSDAAQVEALADAA 77 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHH---CCCEEEEEeCCh--HHHHHHHHH-H---HhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 67999998 6799999999976 489999988642 333332220 0 00134466689999999888763
Q ss_pred --CCCCcceEEEec
Q 004585 718 --PLETFDSMSHWK 729 (744)
Q Consensus 718 --~I~~~DavIilT 729 (744)
..+..|.++..+
T Consensus 78 ~~~~g~id~vi~~A 91 (287)
T PRK06194 78 LERFGAVHLLFNNA 91 (287)
T ss_pred HHHcCCCCEEEECC
Confidence 123568888776
No 144
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=81.78 E-value=3 Score=44.62 Aligned_cols=71 Identities=21% Similarity=0.160 Sum_probs=51.8
Q ss_pred eEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCccccc
Q 004585 384 HILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (744)
Q Consensus 384 HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~ 462 (744)
.++|.|. |-.|..+++.|...+ +.|++++++++..+.. ...++.++.||..+.+.++++ ++.++
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g------~~V~~~~r~~~~~~~~--------~~~~~~~~~~D~~~~~~l~~~-~~~~d 66 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQG------EEVRVLVRPTSDRRNL--------EGLDVEIVEGDLRDPASLRKA-VAGCR 66 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCC------CEEEEEEecCcccccc--------ccCCceEEEeeCCCHHHHHHH-HhCCC
Confidence 5889986 667999999998654 5778887765442221 123578899999999988875 45678
Q ss_pred EEEEecC
Q 004585 463 AIIVLAS 469 (744)
Q Consensus 463 aVIiltd 469 (744)
.||-++.
T Consensus 67 ~vi~~a~ 73 (328)
T TIGR03466 67 ALFHVAA 73 (328)
T ss_pred EEEEece
Confidence 8887764
No 145
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=81.74 E-value=3.5 Score=45.01 Aligned_cols=80 Identities=13% Similarity=0.145 Sum_probs=52.3
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCc---hHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCC
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPE---KEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP 718 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~---~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~ 718 (744)
++|||.|+ |-+|..+++.|.+ .|.+|..++..+. .++.+.+.+.. ....+..+.++.||.+|.+.++++
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~---~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Dl~d~~~l~~~- 73 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLE---KGYEVHGLIRRSSSFNTQRIEHIYEDP---HNVNKARMKLHYGDLTDSSNLRRI- 73 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHH---CCCEEEEEecCCcccchhhhhhhhhcc---ccccccceeEEEeccCCHHHHHHH-
Confidence 47999998 7899999999976 4889999876432 12333322100 000112345689999999988764
Q ss_pred CC--CcceEEEec
Q 004585 719 LE--TFDSMSHWK 729 (744)
Q Consensus 719 I~--~~DavIilT 729 (744)
++ ..|.|+-++
T Consensus 74 ~~~~~~d~ViH~A 86 (343)
T TIGR01472 74 IDEIKPTEIYNLA 86 (343)
T ss_pred HHhCCCCEEEECC
Confidence 22 368888766
No 146
>PLN02650 dihydroflavonol-4-reductase
Probab=81.74 E-value=4.6 Score=44.29 Aligned_cols=82 Identities=12% Similarity=0.071 Sum_probs=53.5
Q ss_pred cCeEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCccc
Q 004585 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (744)
Q Consensus 382 k~HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (744)
+.+|+|.|. |-.|..++++|...+ +.|++..++++..+.........-...++.++.||..+.+.+.++ ++.
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~-~~~ 77 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERG------YTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDA-IRG 77 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCC------CEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHH-HhC
Confidence 458999997 557999999998753 466665555543332211100000112578899999999888775 456
Q ss_pred ccEEEEecCC
Q 004585 461 ARAIIVLASD 470 (744)
Q Consensus 461 A~aVIiltdd 470 (744)
+|.||-++..
T Consensus 78 ~d~ViH~A~~ 87 (351)
T PLN02650 78 CTGVFHVATP 87 (351)
T ss_pred CCEEEEeCCC
Confidence 8899888754
No 147
>PRK03612 spermidine synthase; Provisional
Probab=81.66 E-value=5.7 Score=46.62 Aligned_cols=82 Identities=15% Similarity=0.183 Sum_probs=49.8
Q ss_pred CCCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcC-C---CCcCCCCCceEEEEEcCcCCHhhHh
Q 004585 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDG-G---LDISGLMNIKLVHREGNAVIRRHLE 715 (744)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~-g---~~~~~L~n~~V~~i~GD~td~~~L~ 715 (744)
+.+++||++|+|.-+ +++++.++ +...+++++|.+| +-.+...+. . +....+++-.+++++||+. +.++
T Consensus 296 ~~~~rVL~IG~G~G~--~~~~ll~~-~~v~~v~~VEid~--~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~--~~l~ 368 (521)
T PRK03612 296 ARPRRVLVLGGGDGL--ALREVLKY-PDVEQVTLVDLDP--AMTELARTSPALRALNGGALDDPRVTVVNDDAF--NWLR 368 (521)
T ss_pred CCCCeEEEEcCCccH--HHHHHHhC-CCcCeEEEEECCH--HHHHHHHhCCcchhhhccccCCCceEEEEChHH--HHHH
Confidence 356899999998543 44444444 2237999999753 444443331 0 1111244445666899985 4565
Q ss_pred cCCCCCcceEEEec
Q 004585 716 SLPLETFDSMSHWK 729 (744)
Q Consensus 716 e~~I~~~DavIilT 729 (744)
+. -++||.|++=.
T Consensus 369 ~~-~~~fDvIi~D~ 381 (521)
T PRK03612 369 KL-AEKFDVIIVDL 381 (521)
T ss_pred hC-CCCCCEEEEeC
Confidence 54 37999998844
No 148
>PRK07063 short chain dehydrogenase; Provisional
Probab=81.65 E-value=5.4 Score=41.40 Aligned_cols=81 Identities=17% Similarity=0.158 Sum_probs=55.2
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC----
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (744)
..++|.|.+. .|..++++|.+.+ ..|++++++++..++..+++.....+.++.++.+|.++++.++++-
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G------~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 81 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREG------AAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAE 81 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 4688888765 5889999998653 5788888888776665544311112345778899999998876641
Q ss_pred --cccccEEEEecC
Q 004585 458 --VSKARAIIVLAS 469 (744)
Q Consensus 458 --I~~A~aVIiltd 469 (744)
....|.+|-.+.
T Consensus 82 ~~~g~id~li~~ag 95 (260)
T PRK07063 82 EAFGPLDVLVNNAG 95 (260)
T ss_pred HHhCCCcEEEECCC
Confidence 125677777664
No 149
>PRK06940 short chain dehydrogenase; Provisional
Probab=81.41 E-value=4.8 Score=42.64 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=55.0
Q ss_pred cCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC----
Q 004585 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (744)
Q Consensus 382 k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (744)
+..+||.|.+..|..++++|. . +..|++++++++..+...+++.. .+.++.++.+|.++++.++++-
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~------G~~Vv~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dv~d~~~i~~~~~~~~ 72 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-A------GKKVLLADYNEENLEAAAKTLRE--AGFDVSTQEVDVSSRESVKALAATAQ 72 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-C------CCEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEEeecCCHHHHHHHHHHHH
Confidence 457889999888999999984 3 25788888887666555443211 1346788999999998876541
Q ss_pred -cccccEEEEecCC
Q 004585 458 -VSKARAIIVLASD 470 (744)
Q Consensus 458 -I~~A~aVIiltdd 470 (744)
....|.+|-.+.-
T Consensus 73 ~~g~id~li~nAG~ 86 (275)
T PRK06940 73 TLGPVTGLVHTAGV 86 (275)
T ss_pred hcCCCCEEEECCCc
Confidence 1246777776653
No 150
>PRK12829 short chain dehydrogenase; Provisional
Probab=81.40 E-value=4.1 Score=42.16 Aligned_cols=78 Identities=9% Similarity=0.052 Sum_probs=54.4
Q ss_pred CCceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC--
Q 004585 641 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-- 717 (744)
Q Consensus 641 ~~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~-- 717 (744)
+.++++|.|+ |.+|..+++.|.+ .|.+|.++..++ +..+.+.+ .+++..+..+.+|.+|++.+++.
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~---~g~~V~~~~r~~--~~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAE---AGARVHVCDVSE--AALAATAA------RLPGAKVTATVADVADPAQVERVFD 78 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHH------HHhcCceEEEEccCCCHHHHHHHHH
Confidence 3478999998 6789999999976 488999988643 34444433 12222345588999999987642
Q ss_pred ----CCCCcceEEEec
Q 004585 718 ----PLETFDSMSHWK 729 (744)
Q Consensus 718 ----~I~~~DavIilT 729 (744)
.....|.+|..+
T Consensus 79 ~~~~~~~~~d~vi~~a 94 (264)
T PRK12829 79 TAVERFGGLDVLVNNA 94 (264)
T ss_pred HHHHHhCCCCEEEECC
Confidence 134689988766
No 151
>PRK06482 short chain dehydrogenase; Provisional
Probab=81.38 E-value=6.9 Score=41.06 Aligned_cols=77 Identities=14% Similarity=0.077 Sum_probs=55.7
Q ss_pred CeEEEEccc-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC----
Q 004585 383 NHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (744)
Q Consensus 383 ~HIII~G~g-~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (744)
++++|.|.+ ..|..++++|...+ +.|+++.++++.++.+.... +.++.++.+|.++.+.++++-
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g------~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 71 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARG------DRVAATVRRPDALDDLKARY-----GDRLWVLQLDVTDSAAVRAVVDRAF 71 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHhc-----cCceEEEEccCCCHHHHHHHHHHHH
Confidence 578999975 46899999998653 57888888887666544321 236788999999999887641
Q ss_pred --cccccEEEEecCC
Q 004585 458 --VSKARAIIVLASD 470 (744)
Q Consensus 458 --I~~A~aVIiltdd 470 (744)
....|.+|-++..
T Consensus 72 ~~~~~id~vi~~ag~ 86 (276)
T PRK06482 72 AALGRIDVVVSNAGY 86 (276)
T ss_pred HHcCCCCEEEECCCC
Confidence 2356888887654
No 152
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=81.24 E-value=4.3 Score=44.41 Aligned_cols=73 Identities=16% Similarity=0.057 Sum_probs=50.3
Q ss_pred CeEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCC-CHHHHhccCccc
Q 004585 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPL-ILADLKKVSVSK 460 (744)
Q Consensus 383 ~HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t-~~e~L~rAgI~~ 460 (744)
++|+|.|. |-.|..++++|.... ++.|+.++++.+...... ...++.++.||.. +.+.+.++ +++
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~-----~~~V~~~~r~~~~~~~~~-------~~~~~~~~~~Dl~~~~~~~~~~-~~~ 68 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETT-----DWEVYGMDMQTDRLGDLV-------NHPRMHFFEGDITINKEWIEYH-VKK 68 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCC-----CCeEEEEeCcHHHHHHhc-------cCCCeEEEeCCCCCCHHHHHHH-HcC
Confidence 47999997 778999999998642 256777777654333221 1235888999997 66667654 457
Q ss_pred ccEEEEec
Q 004585 461 ARAIIVLA 468 (744)
Q Consensus 461 A~aVIilt 468 (744)
+|.||=++
T Consensus 69 ~d~ViH~a 76 (347)
T PRK11908 69 CDVILPLV 76 (347)
T ss_pred CCEEEECc
Confidence 89888543
No 153
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.22 E-value=4.9 Score=41.14 Aligned_cols=77 Identities=8% Similarity=0.106 Sum_probs=54.5
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCC-CceEEEEEcCcCCHhhHhcC--
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM-NIKLVHREGNAVIRRHLESL-- 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~-n~~V~~i~GD~td~~~L~e~-- 717 (744)
.++++|.|+ |.+|..+++.|.+ .|.+|+++...+ ++.+.+.+ .+. +..+..+.+|.+|++.++++
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~---~G~~V~~~~r~~--~~~~~~~~------~~~~~~~~~~~~~D~~~~~~~~~~~~ 73 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAA---EGARVVVTDRNE--EAAERVAA------EILAGGRAIAVAADVSDEADVEAAVA 73 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHH------HHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 358999997 6799999999976 488999998754 44444332 111 23355689999999998753
Q ss_pred ----CCCCcceEEEec
Q 004585 718 ----PLETFDSMSHWK 729 (744)
Q Consensus 718 ----~I~~~DavIilT 729 (744)
..+..|.+|..+
T Consensus 74 ~~~~~~~~~d~vi~~a 89 (251)
T PRK07231 74 AALERFGSVDILVNNA 89 (251)
T ss_pred HHHHHhCCCCEEEECC
Confidence 234678888766
No 154
>PRK07062 short chain dehydrogenase; Provisional
Probab=81.19 E-value=5.7 Score=41.37 Aligned_cols=81 Identities=20% Similarity=0.182 Sum_probs=54.2
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhcc-----
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA----- 456 (744)
..++|.|.+. .|..++++|...+ ..|+++.++++..+...++......+.++.++.+|.++++.++++
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 82 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAG------ASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVE 82 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC------CeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 5788888765 6899999998653 568888888776665444321111234677888999998887653
Q ss_pred -CcccccEEEEecC
Q 004585 457 -SVSKARAIIVLAS 469 (744)
Q Consensus 457 -gI~~A~aVIiltd 469 (744)
.....|.+|-.+.
T Consensus 83 ~~~g~id~li~~Ag 96 (265)
T PRK07062 83 ARFGGVDMLVNNAG 96 (265)
T ss_pred HhcCCCCEEEECCC
Confidence 1234577776654
No 155
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=81.16 E-value=3.7 Score=38.83 Aligned_cols=88 Identities=15% Similarity=0.148 Sum_probs=54.1
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCC-EEEEEccCCchH----HHHHhh--cCCCC---------cCCCCCceEEEEE
Q 004585 642 PEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEKE----REKKLT--DGGLD---------ISGLMNIKLVHRE 705 (744)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~~~~gs-~v~IIe~~p~~e----r~~~l~--~~g~~---------~~~L~n~~V~~i~ 705 (744)
..||+|+|.|.+|..+++.|... |. +++|++.+.-++ |.-... +.|.. ....+++.+..+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~---Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~ 78 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARS---GVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIP 78 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHH---TTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHh---CCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeee
Confidence 36899999999999999999864 54 799999752211 100000 11100 0123567776666
Q ss_pred cCcCCHhhHhcCCCCCcceEEEecCchhh
Q 004585 706 GNAVIRRHLESLPLETFDSMSHWKTRLCI 734 (744)
Q Consensus 706 GD~td~~~L~e~~I~~~DavIilTde~ni 734 (744)
.+. +++.+++. ++.+|.+|..+|+...
T Consensus 79 ~~~-~~~~~~~~-~~~~d~vi~~~d~~~~ 105 (135)
T PF00899_consen 79 EKI-DEENIEEL-LKDYDIVIDCVDSLAA 105 (135)
T ss_dssp SHC-SHHHHHHH-HHTSSEEEEESSSHHH
T ss_pred ccc-cccccccc-ccCCCEEEEecCCHHH
Confidence 666 44444443 4789999988876544
No 156
>PRK07454 short chain dehydrogenase; Provisional
Probab=81.15 E-value=5.8 Score=40.61 Aligned_cols=79 Identities=19% Similarity=0.051 Sum_probs=53.8
Q ss_pred CeEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC----
Q 004585 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (744)
Q Consensus 383 ~HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (744)
..++|.|. |..|..++++|.+.+ ..|++++++++..+...+.... .+.++.++.+|.++++.+.++-
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G------~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAG------WDLALVARSQDALEALAAELRS--TGVKAAAYSIDLSNPEAIAPGIAELL 78 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--CCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 36788886 557899999998643 5788888887766554433211 1346788999999998876641
Q ss_pred --cccccEEEEecC
Q 004585 458 --VSKARAIIVLAS 469 (744)
Q Consensus 458 --I~~A~aVIiltd 469 (744)
..+.|.+|-.+.
T Consensus 79 ~~~~~id~lv~~ag 92 (241)
T PRK07454 79 EQFGCPDVLINNAG 92 (241)
T ss_pred HHcCCCCEEEECCC
Confidence 124677777664
No 157
>PLN02427 UDP-apiose/xylose synthase
Probab=81.14 E-value=4.3 Score=45.19 Aligned_cols=82 Identities=12% Similarity=-0.011 Sum_probs=56.0
Q ss_pred ecCeEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCcc
Q 004585 381 EKNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (744)
Q Consensus 381 ~k~HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~ 459 (744)
..++|+|.|. |-.|..++++|...+ ++.|+.++++.+..+.+.... ......++.++.||..+.+.++++ ++
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~-----g~~V~~l~r~~~~~~~l~~~~-~~~~~~~~~~~~~Dl~d~~~l~~~-~~ 85 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTET-----PHKVLALDVYNDKIKHLLEPD-TVPWSGRIQFHRINIKHDSRLEGL-IK 85 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcC-----CCEEEEEecCchhhhhhhccc-cccCCCCeEEEEcCCCChHHHHHH-hh
Confidence 3457999997 667999999998742 256777777655544332110 000123688999999999998876 45
Q ss_pred cccEEEEecC
Q 004585 460 KARAIIVLAS 469 (744)
Q Consensus 460 ~A~aVIiltd 469 (744)
.+|.||=++.
T Consensus 86 ~~d~ViHlAa 95 (386)
T PLN02427 86 MADLTINLAA 95 (386)
T ss_pred cCCEEEEccc
Confidence 6899887774
No 158
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=81.13 E-value=5.6 Score=40.61 Aligned_cols=85 Identities=11% Similarity=0.100 Sum_probs=53.1
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCC-EEEEEccCCc-----------------hHHHHHhhcCCCCcCCCCCceEE
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPE-----------------KEREKKLTDGGLDISGLMNIKLV 702 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs-~v~IIe~~p~-----------------~er~~~l~~~g~~~~~L~n~~V~ 702 (744)
...+|+|+|.|..|..+++.|... |. ++++++.+.- +.|.+.+++. + ...-+++.+.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~---Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~-l-~~~np~v~i~ 94 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGA---GVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQR-L-RELNSDIQVT 94 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHc---CCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHH-H-HHhCCCCEEE
Confidence 456899999999999999999864 65 8999997521 1122222210 0 0012466665
Q ss_pred EEEcCcCCHhhHhcCCCCCcceEEEecCch
Q 004585 703 HREGNAVIRRHLESLPLETFDSMSHWKTRL 732 (744)
Q Consensus 703 ~i~GD~td~~~L~e~~I~~~DavIilTde~ 732 (744)
.+..+... +.+.+ -+.++|.||..+|..
T Consensus 95 ~~~~~i~~-~~~~~-~~~~~D~Vi~~~d~~ 122 (202)
T TIGR02356 95 ALKERVTA-ENLEL-LINNVDLVLDCTDNF 122 (202)
T ss_pred EehhcCCH-HHHHH-HHhCCCEEEECCCCH
Confidence 55555443 33433 367899998888654
No 159
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=81.00 E-value=3 Score=45.17 Aligned_cols=34 Identities=12% Similarity=0.267 Sum_probs=29.8
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCC
Q 004585 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 678 (744)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p 678 (744)
.++++|+|.|++|..+++.|... |.+|++.+..+
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~---G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSAL---GARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHC---CCEEEEEeCCH
Confidence 46899999999999999999865 88999999753
No 160
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=80.93 E-value=4.8 Score=46.02 Aligned_cols=72 Identities=13% Similarity=0.120 Sum_probs=49.1
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~ 720 (744)
..++++|+|+|.+|..+++.+... |.+|++++.+| .|+......| ..+ .+ ++++ ++
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~---Ga~ViV~d~dp--~ra~~A~~~G--------~~v-------~~---l~ea-l~ 266 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL---GARVIVTEVDP--ICALQAAMDG--------FRV-------MT---MEEA-AE 266 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC---CCEEEEEcCCc--hhhHHHHhcC--------CEe-------cC---HHHH-Hh
Confidence 457999999999999999999875 88999998754 4544333212 111 11 1221 34
Q ss_pred CcceEEEecCchhhhh
Q 004585 721 TFDSMSHWKTRLCILT 736 (744)
Q Consensus 721 ~~DavIilTde~ni~t 736 (744)
.+|.||..|..-+++.
T Consensus 267 ~aDVVI~aTG~~~vI~ 282 (425)
T PRK05476 267 LGDIFVTATGNKDVIT 282 (425)
T ss_pred CCCEEEECCCCHHHHH
Confidence 7899988886666765
No 161
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.91 E-value=5.5 Score=40.58 Aligned_cols=80 Identities=15% Similarity=0.129 Sum_probs=54.2
Q ss_pred CeEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEE-cCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCc--
Q 004585 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (744)
Q Consensus 383 ~HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLi-d~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI-- 458 (744)
++++|.|. |..|..+++.|...+ ..|+++ +++++..+...+.... .+.++.++.+|.++++.++++--
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g------~~v~~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 77 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEG------AKVVIAYDINEEAAQELLEEIKE--EGGDAIAVKADVSSEEDVENLVEQI 77 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC------CEEEEEcCCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHH
Confidence 57899987 457899999997643 567777 8877666554443211 23458889999999998766421
Q ss_pred ----ccccEEEEecCC
Q 004585 459 ----SKARAIIVLASD 470 (744)
Q Consensus 459 ----~~A~aVIiltdd 470 (744)
...|.+|..+..
T Consensus 78 ~~~~~~id~vi~~ag~ 93 (247)
T PRK05565 78 VEKFGKIDILVNNAGI 93 (247)
T ss_pred HHHhCCCCEEEECCCc
Confidence 246777776643
No 162
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=80.84 E-value=4.7 Score=42.71 Aligned_cols=69 Identities=17% Similarity=0.137 Sum_probs=50.5
Q ss_pred EEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC-----c
Q 004585 385 ILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-----V 458 (744)
Q Consensus 385 III~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg-----I 458 (744)
|+|.|. |..|..++++|.+.+ +.|.+..++++... ..++..+.||..|++.|.++= +
T Consensus 2 ilVtGatG~iG~~vv~~L~~~g------~~V~~~~R~~~~~~-----------~~~~~~~~~d~~d~~~l~~a~~~~~~~ 64 (285)
T TIGR03649 2 ILLTGGTGKTASRIARLLQAAS------VPFLVASRSSSSSA-----------GPNEKHVKFDWLDEDTWDNPFSSDDGM 64 (285)
T ss_pred EEEEcCCChHHHHHHHHHHhCC------CcEEEEeCCCcccc-----------CCCCccccccCCCHHHHHHHHhcccCc
Confidence 678887 778999999998653 56778877765321 124566789999999998752 3
Q ss_pred cc-ccEEEEecCC
Q 004585 459 SK-ARAIIVLASD 470 (744)
Q Consensus 459 ~~-A~aVIiltdd 470 (744)
.. ++.++.++..
T Consensus 65 ~g~~d~v~~~~~~ 77 (285)
T TIGR03649 65 EPEISAVYLVAPP 77 (285)
T ss_pred CCceeEEEEeCCC
Confidence 45 8888877653
No 163
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=80.80 E-value=5.1 Score=38.29 Aligned_cols=73 Identities=21% Similarity=0.189 Sum_probs=49.8
Q ss_pred cCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCcccc
Q 004585 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (744)
Q Consensus 382 k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (744)
..+++|+|.|..|..+++.|...+ ...|.+.+++++..+...+++. .. .+..+..+.+.+ ++++
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g-----~~~v~v~~r~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~----~~~~ 82 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELG-----AAKIVIVNRTLEKAKALAERFG-----EL--GIAIAYLDLEEL----LAEA 82 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-----CCEEEEEcCCHHHHHHHHHHHh-----hc--ccceeecchhhc----cccC
Confidence 468999999999999999997642 2578888999887776554321 00 011122333322 6899
Q ss_pred cEEEEecCC
Q 004585 462 RAIIVLASD 470 (744)
Q Consensus 462 ~aVIiltdd 470 (744)
|.||.++..
T Consensus 83 Dvvi~~~~~ 91 (155)
T cd01065 83 DLIINTTPV 91 (155)
T ss_pred CEEEeCcCC
Confidence 999999976
No 164
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=80.78 E-value=5.8 Score=37.95 Aligned_cols=81 Identities=20% Similarity=0.172 Sum_probs=56.3
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCC--hHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhcc--C
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERD--KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--S 457 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d--~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA--g 457 (744)
++++|.|.+. .|..++++|...+ +..|+++.++ .+..+...+++. ..+.++.++..|.++++.++++ .
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g-----~~~v~~~~r~~~~~~~~~l~~~l~--~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRG-----ARVVILTSRSEDSEGAQELIQELK--APGAKITFIECDLSDPESIRALIEE 73 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTT-----TEEEEEEESSCHHHHHHHHHHHHH--HTTSEEEEEESETTSHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcC-----ceEEEEeeeccccccccccccccc--ccccccccccccccccccccccccc
Confidence 3789999766 6899999998762 3577777777 455555544432 1346789999999999887764 1
Q ss_pred ----cccccEEEEecCC
Q 004585 458 ----VSKARAIIVLASD 470 (744)
Q Consensus 458 ----I~~A~aVIiltdd 470 (744)
-..-|.+|..+.-
T Consensus 74 ~~~~~~~ld~li~~ag~ 90 (167)
T PF00106_consen 74 VIKRFGPLDILINNAGI 90 (167)
T ss_dssp HHHHHSSESEEEEECSC
T ss_pred ccccccccccccccccc
Confidence 2255677776655
No 165
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=80.75 E-value=6.9 Score=42.64 Aligned_cols=79 Identities=14% Similarity=0.056 Sum_probs=54.4
Q ss_pred CeEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCcccc
Q 004585 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (744)
Q Consensus 383 ~HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (744)
.+++|.|. |-.|..++++|...+ .++.|++.+++....+.+.... ...++.++.||.++.+.+.++ +++.
T Consensus 5 k~vLVTGatG~IG~~l~~~L~~~g----~~~~V~~~~r~~~~~~~~~~~~----~~~~~~~v~~Dl~d~~~l~~~-~~~i 75 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLENY----NPKKIIIYSRDELKQWEMQQKF----PAPCLRFFIGDVRDKERLTRA-LRGV 75 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHhC----CCcEEEEEcCChhHHHHHHHHh----CCCcEEEEEccCCCHHHHHHH-HhcC
Confidence 46888887 557999999998652 1246777777654433322211 123588899999999999875 4568
Q ss_pred cEEEEecCC
Q 004585 462 RAIIVLASD 470 (744)
Q Consensus 462 ~aVIiltdd 470 (744)
|.||-++..
T Consensus 76 D~Vih~Ag~ 84 (324)
T TIGR03589 76 DYVVHAAAL 84 (324)
T ss_pred CEEEECccc
Confidence 999887653
No 166
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=80.74 E-value=2.8 Score=47.79 Aligned_cols=69 Identities=20% Similarity=0.177 Sum_probs=48.3
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCC-EEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs-~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I 719 (744)
..++|+|+|.|.+|..+++.|... |. .|++++.. .+|.+.+++ .+. ++..+.+.+.+ .+
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~---G~~~V~v~~r~--~~ra~~la~------~~g--------~~~~~~~~~~~-~l 240 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEK---GVRKITVANRT--LERAEELAE------EFG--------GEAIPLDELPE-AL 240 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHC---CCCeEEEEeCC--HHHHHHHHH------HcC--------CcEeeHHHHHH-Hh
Confidence 446899999999999999999753 65 78888864 578777765 221 11222234433 25
Q ss_pred CCcceEEEec
Q 004585 720 ETFDSMSHWK 729 (744)
Q Consensus 720 ~~~DavIilT 729 (744)
..+|.||..|
T Consensus 241 ~~aDvVI~aT 250 (423)
T PRK00045 241 AEADIVISST 250 (423)
T ss_pred ccCCEEEECC
Confidence 6899999998
No 167
>PRK05993 short chain dehydrogenase; Provisional
Probab=80.74 E-value=4.4 Score=42.83 Aligned_cols=73 Identities=16% Similarity=0.058 Sum_probs=51.8
Q ss_pred CeEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC--c-
Q 004585 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--V- 458 (744)
Q Consensus 383 ~HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--I- 458 (744)
..++|.|. |..|..++++|.+.+ ..|++++++++.++.+.+ .++.++.+|.++++.++++- +
T Consensus 5 k~vlItGasggiG~~la~~l~~~G------~~Vi~~~r~~~~~~~l~~--------~~~~~~~~Dl~d~~~~~~~~~~~~ 70 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDG------WRVFATCRKEEDVAALEA--------EGLEAFQLDYAEPESIAALVAQVL 70 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHH--------CCceEEEccCCCHHHHHHHHHHHH
Confidence 47899998 446889999998643 678888988877665432 24678899999998776541 1
Q ss_pred ----ccccEEEEecC
Q 004585 459 ----SKARAIIVLAS 469 (744)
Q Consensus 459 ----~~A~aVIiltd 469 (744)
..-|.+|-.+.
T Consensus 71 ~~~~g~id~li~~Ag 85 (277)
T PRK05993 71 ELSGGRLDALFNNGA 85 (277)
T ss_pred HHcCCCccEEEECCC
Confidence 24577776653
No 168
>PRK08017 oxidoreductase; Provisional
Probab=80.71 E-value=4.6 Score=41.65 Aligned_cols=59 Identities=14% Similarity=-0.035 Sum_probs=43.6
Q ss_pred CeEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhc
Q 004585 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (744)
Q Consensus 383 ~HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~r 455 (744)
+.++|.|. |..|..+++.|...+ ..|++++++++.++...+ .++.++.+|..+.+.+++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g------~~v~~~~r~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~ 62 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRG------YRVLAACRKPDDVARMNS--------LGFTGILLDLDDPESVER 62 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC------CEEEEEeCCHHHhHHHHh--------CCCeEEEeecCCHHHHHH
Confidence 46999998 778999999998643 567888888776655421 246678889888877654
No 169
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=80.70 E-value=5.3 Score=41.65 Aligned_cols=77 Identities=19% Similarity=0.212 Sum_probs=53.5
Q ss_pred cCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC---
Q 004585 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (744)
Q Consensus 382 k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (744)
.+.++|.|.+. .|..++++|.+.+ ..|++++++++..+...++. +.++.++.+|.++++.++++-
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G------~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 74 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEG------ARVAVLERSAEKLASLRQRF-----GDHVLVVEGDVTSYADNQRAVDQT 74 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHH
Confidence 35788999865 6889999998654 67888898887776654432 235778889999988776541
Q ss_pred ---cccccEEEEecC
Q 004585 458 ---VSKARAIIVLAS 469 (744)
Q Consensus 458 ---I~~A~aVIiltd 469 (744)
..+.|.+|-.+.
T Consensus 75 ~~~~g~id~li~~ag 89 (263)
T PRK06200 75 VDAFGKLDCFVGNAG 89 (263)
T ss_pred HHhcCCCCEEEECCC
Confidence 124566666553
No 170
>PRK08309 short chain dehydrogenase; Provisional
Probab=80.61 E-value=6.2 Score=39.55 Aligned_cols=65 Identities=17% Similarity=0.029 Sum_probs=45.9
Q ss_pred CeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhcc
Q 004585 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (744)
Q Consensus 383 ~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA 456 (744)
++++|.|....+..+++.|...+ ..|++..++++..+....... ....+.++.+|..|++.++++
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G------~~V~v~~R~~~~~~~l~~~l~---~~~~i~~~~~Dv~d~~sv~~~ 65 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKG------FHVSVIARREVKLENVKREST---TPESITPLPLDYHDDDALKLA 65 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCc------CEEEEEECCHHHHHHHHHHhh---cCCcEEEEEccCCCHHHHHHH
Confidence 47899998777778999998653 577777888877665543221 123577788888888887664
No 171
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=80.61 E-value=6.8 Score=43.01 Aligned_cols=77 Identities=10% Similarity=0.000 Sum_probs=54.1
Q ss_pred CCceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCC-CCceEEEEEcCcCCHhhHhcCC
Q 004585 641 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGL-MNIKLVHREGNAVIRRHLESLP 718 (744)
Q Consensus 641 ~~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L-~n~~V~~i~GD~td~~~L~e~~ 718 (744)
...+|||.|+ |-+|..+++.|.+ .|.+|.++...+ +..+.+.+ .+ .+..+.++.+|.+|.+.++++
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~---~G~~V~~~~r~~--~~~~~~~~------~~~~~~~~~~~~~Dl~~~~~~~~~- 76 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQ---RGYTVHATLRDP--AKSLHLLS------KWKEGDRLRLFRADLQEEGSFDEA- 76 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHH---CCCEEEEEeCCh--HHHHHHHH------hhccCCeEEEEECCCCCHHHHHHH-
Confidence 3458999997 7899999999976 488998876543 33222221 11 112355688999999988775
Q ss_pred CCCcceEEEec
Q 004585 719 LETFDSMSHWK 729 (744)
Q Consensus 719 I~~~DavIilT 729 (744)
++..|.||-++
T Consensus 77 ~~~~d~Vih~A 87 (353)
T PLN02896 77 VKGCDGVFHVA 87 (353)
T ss_pred HcCCCEEEECC
Confidence 55789999887
No 172
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=80.47 E-value=5.9 Score=41.04 Aligned_cols=76 Identities=12% Similarity=0.127 Sum_probs=53.3
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCc---
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI--- 458 (744)
..++|.|.+. .|..+++.|.+.+ ..|++++++.+..++..++. +..+.++.+|.++++.++++--
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G------~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEG------ARVVIADIKPARARLAALEI-----GPAAIAVSLDVTRQDSIDRIVAAAV 75 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcC------CEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHHH
Confidence 4688998744 6899999998753 67889999887766654432 2347788899999888766411
Q ss_pred ---ccccEEEEecC
Q 004585 459 ---SKARAIIVLAS 469 (744)
Q Consensus 459 ---~~A~aVIiltd 469 (744)
...|.+|-.+.
T Consensus 76 ~~~~~id~li~~ag 89 (257)
T PRK07067 76 ERFGGIDILFNNAA 89 (257)
T ss_pred HHcCCCCEEEECCC
Confidence 24567666553
No 173
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=80.40 E-value=2.6 Score=47.97 Aligned_cols=69 Identities=23% Similarity=0.162 Sum_probs=48.3
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCC-CEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g-s~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I 719 (744)
..++++|+|.|.+|..+++.|... | .+|++++.. .+|.+.+++ .+.. . ..+.+.+.++ +
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~~~---G~~~V~v~~rs--~~ra~~la~------~~g~-~-------~i~~~~l~~~-l 238 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLLRK---GVGKILIANRT--YERAEDLAK------ELGG-E-------AVKFEDLEEY-L 238 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHHHC---CCCEEEEEeCC--HHHHHHHHH------HcCC-e-------EeeHHHHHHH-H
Confidence 347899999999999999999764 6 789999864 467776664 2211 1 1122334433 5
Q ss_pred CCcceEEEec
Q 004585 720 ETFDSMSHWK 729 (744)
Q Consensus 720 ~~~DavIilT 729 (744)
..+|.|+..|
T Consensus 239 ~~aDvVi~aT 248 (417)
T TIGR01035 239 AEADIVISST 248 (417)
T ss_pred hhCCEEEECC
Confidence 6899999998
No 174
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=80.36 E-value=5.2 Score=43.19 Aligned_cols=81 Identities=12% Similarity=0.051 Sum_probs=52.6
Q ss_pred CeEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCcccc
Q 004585 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (744)
Q Consensus 383 ~HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (744)
..++|.|. |-.|..++++|...+ +.|+++.++++..+.........-...++.++.||.++++.++++ +++.
T Consensus 6 k~vlVtG~~G~IG~~l~~~L~~~G------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~-~~~~ 78 (325)
T PLN02989 6 KVVCVTGASGYIASWIVKLLLFRG------YTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELA-IDGC 78 (325)
T ss_pred CEEEEECCchHHHHHHHHHHHHCC------CEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHH-HcCC
Confidence 57899997 456999999998754 566666555443322111000000113578899999999988775 4568
Q ss_pred cEEEEecCC
Q 004585 462 RAIIVLASD 470 (744)
Q Consensus 462 ~aVIiltdd 470 (744)
|.||-++..
T Consensus 79 d~vih~A~~ 87 (325)
T PLN02989 79 ETVFHTASP 87 (325)
T ss_pred CEEEEeCCC
Confidence 888888764
No 175
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=80.21 E-value=4.7 Score=43.23 Aligned_cols=78 Identities=13% Similarity=0.102 Sum_probs=52.1
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCch-HHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEK-EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~-er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~ 720 (744)
++|||.|+ |-+|..+++.|.+ .|.+|+++..++.. +....+... . ..-++ +..+.||.+|.+.++++ ++
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~--~-~~~~~--~~~~~~Dl~~~~~~~~~-~~ 75 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQ---RGYTVKATVRDPNDPKKTEHLLAL--D-GAKER--LHLFKANLLEEGSFDSV-VD 75 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHH---CCCEEEEEEcCCCchhhHHHHHhc--c-CCCCc--eEEEeccccCcchHHHH-Hc
Confidence 68999997 8899999999976 48888877654321 111222110 0 00123 44689999999888765 56
Q ss_pred CcceEEEec
Q 004585 721 TFDSMSHWK 729 (744)
Q Consensus 721 ~~DavIilT 729 (744)
.+|.|+-++
T Consensus 76 ~~d~Vih~A 84 (322)
T PLN02662 76 GCEGVFHTA 84 (322)
T ss_pred CCCEEEEeC
Confidence 789998876
No 176
>PRK06172 short chain dehydrogenase; Provisional
Probab=80.21 E-value=6.5 Score=40.58 Aligned_cols=79 Identities=18% Similarity=0.130 Sum_probs=53.2
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhcc--Cc-
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--SV- 458 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA--gI- 458 (744)
..++|.|.+. .|..++++|.+.+ ..|++++++++..+...+++. . .+.++.++.+|.++.+.++++ .+
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G------~~v~~~~r~~~~~~~~~~~~~-~-~~~~~~~~~~D~~~~~~i~~~~~~~~ 79 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREG------AKVVVADRDAAGGEETVALIR-E-AGGEALFVACDVTRDAEVKALVEQTI 79 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHH-h-cCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 5788998755 6899999998653 578888988776655544321 1 134578889999998877664 11
Q ss_pred ---ccccEEEEecC
Q 004585 459 ---SKARAIIVLAS 469 (744)
Q Consensus 459 ---~~A~aVIiltd 469 (744)
..-|.+|-.+.
T Consensus 80 ~~~g~id~li~~ag 93 (253)
T PRK06172 80 AAYGRLDYAFNNAG 93 (253)
T ss_pred HHhCCCCEEEECCC
Confidence 13366666553
No 177
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=80.18 E-value=6.1 Score=40.89 Aligned_cols=81 Identities=19% Similarity=0.098 Sum_probs=55.0
Q ss_pred cCeEEEEccc-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC---
Q 004585 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (744)
Q Consensus 382 k~HIII~G~g-~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (744)
..+++|.|.+ ..|..++++|.+.+ ..|++.+++++..+...+++.. .+.++.++.+|.++++.++++-
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G------~~V~~~~r~~~~~~~~~~~i~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 81 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAG------AEVILNGRDPAKLAAAAESLKG--QGLSAHALAFDVTDHDAVRAAIDAF 81 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHh--cCceEEEEEccCCCHHHHHHHHHHH
Confidence 4578899874 46899999998653 5688888887766654443211 1335788899999998877652
Q ss_pred ---cccccEEEEecCC
Q 004585 458 ---VSKARAIIVLASD 470 (744)
Q Consensus 458 ---I~~A~aVIiltdd 470 (744)
...-|.+|-.+..
T Consensus 82 ~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 82 EAEIGPIDILVNNAGM 97 (255)
T ss_pred HHhcCCCCEEEECCCC
Confidence 1235677766643
No 178
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=80.17 E-value=5.7 Score=41.36 Aligned_cols=78 Identities=19% Similarity=0.168 Sum_probs=53.1
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC----
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (744)
++++|.|.+. .|..++++|...+ ..|++++++++.+++..+++.. ..++.++.+|.++++.++++-
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G------~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~d~~~~~~~~~~~~ 71 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKG------ARVVISSRNEENLEKALKELKE---YGEVYAVKADLSDKDDLKNLVKEAW 71 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHh---cCCceEEEcCCCCHHHHHHHHHHHH
Confidence 3789999866 6889999998653 5688888888776665544311 125778889999988776531
Q ss_pred --cccccEEEEecC
Q 004585 458 --VSKARAIIVLAS 469 (744)
Q Consensus 458 --I~~A~aVIiltd 469 (744)
...-|.+|-.+.
T Consensus 72 ~~~g~id~li~naG 85 (259)
T PRK08340 72 ELLGGIDALVWNAG 85 (259)
T ss_pred HhcCCCCEEEECCC
Confidence 134566665543
No 179
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=80.08 E-value=1.8 Score=41.01 Aligned_cols=55 Identities=9% Similarity=0.167 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004585 314 FAEALWLSWTFVADSGNHADRVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEK 368 (744)
Q Consensus 314 ~~dA~y~~~~tltTvGygd~~~t~~gRi~~v~lil~Gi~i~a~lig~It~~i~~~ 368 (744)
+.+++|+++.++...|.--.+.+..+|++.+++.++++++.+...+.++..+...
T Consensus 45 ~~~~~~~~~~~~~~q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~ 99 (148)
T PF00060_consen 45 LSNSFWYTFGTLLQQGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVP 99 (148)
T ss_dssp HHHHHHHCCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6778887776666533333467889999999999999988888777777766553
No 180
>PRK12939 short chain dehydrogenase; Provisional
Probab=79.87 E-value=6.6 Score=40.18 Aligned_cols=81 Identities=16% Similarity=0.079 Sum_probs=56.0
Q ss_pred cCeEEEEccc-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC---
Q 004585 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (744)
Q Consensus 382 k~HIII~G~g-~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (744)
..+++|.|.+ ..|..++++|...+ +.|++++++++..+...+++.. .+.++.++.+|.++++.++++-
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G------~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAG------ATVAFNDGLAAEARELAAALEA--AGGRAHAIAADLADPASVQRFFDAA 78 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHH
Confidence 4688999974 57999999998643 5677778887766655443211 1346888999999998876542
Q ss_pred ---cccccEEEEecCC
Q 004585 458 ---VSKARAIIVLASD 470 (744)
Q Consensus 458 ---I~~A~aVIiltdd 470 (744)
..+.|.+|-.+..
T Consensus 79 ~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 79 AAALGGLDGLVNNAGI 94 (250)
T ss_pred HHHcCCCCEEEECCCC
Confidence 1357888877653
No 181
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=79.83 E-value=8.2 Score=39.62 Aligned_cols=77 Identities=9% Similarity=0.085 Sum_probs=52.7
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhc----
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES---- 716 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e---- 716 (744)
.++++|.|+ |.+|..++++|.+ .|.+|.++...+..+-.+.+.+ + +..+..+.+|.+|++.+++
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~---~G~~vi~~~r~~~~~~~~~~~~-------~-~~~~~~~~~D~~~~~~~~~~~~~ 73 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAE---AGADIVGAGRSEPSETQQQVEA-------L-GRRFLSLTADLSDIEAIKALVDS 73 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEcCchHHHHHHHHHh-------c-CCceEEEECCCCCHHHHHHHHHH
Confidence 468999998 6789999999986 4889999886432222233332 1 1234568899999988762
Q ss_pred --CCCCCcceEEEec
Q 004585 717 --LPLETFDSMSHWK 729 (744)
Q Consensus 717 --~~I~~~DavIilT 729 (744)
+.....|.+|-.+
T Consensus 74 ~~~~~~~~d~li~~a 88 (248)
T TIGR01832 74 AVEEFGHIDILVNNA 88 (248)
T ss_pred HHHHcCCCCEEEECC
Confidence 2235689888765
No 182
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=79.81 E-value=4.1 Score=46.43 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=50.8
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCC-CEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004585 642 PEKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (744)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~~~~g-s~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~ 720 (744)
.++++|+|.|..|..++..|.+. | .+++|++.. .+|.+.+++ .+.+. ....-+.|.+. +.
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~~---g~~~I~V~nRt--~~ra~~La~------~~~~~-------~~~~~~~l~~~-l~ 241 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTAL---APKQIMLANRT--IEKAQKITS------AFRNA-------SAHYLSELPQL-IK 241 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHc---CCCEEEEECCC--HHHHHHHHH------HhcCC-------eEecHHHHHHH-hc
Confidence 46899999999999999999763 5 579999974 588888886 33221 22333455443 77
Q ss_pred CcceEEEec
Q 004585 721 TFDSMSHWK 729 (744)
Q Consensus 721 ~~DavIilT 729 (744)
++|.||..|
T Consensus 242 ~aDiVI~aT 250 (414)
T PRK13940 242 KADIIIAAV 250 (414)
T ss_pred cCCEEEECc
Confidence 899999998
No 183
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.79 E-value=6.8 Score=40.06 Aligned_cols=80 Identities=19% Similarity=0.161 Sum_probs=55.4
Q ss_pred cCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC---
Q 004585 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (744)
Q Consensus 382 k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (744)
.++++|.|.+. .|..++++|.+.+ ..|++++++++..++..++.. ..+.++.++.+|.++++.++++-
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G------~~Vi~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEG------VNVGLLARTEENLKAVAEEVE--AYGVKVVIATADVSDYEEVTAAIEQL 78 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHH--HhCCeEEEEECCCCCHHHHHHHHHHH
Confidence 35789999765 5888999998643 578888888766555443321 12346888999999999876641
Q ss_pred ---cccccEEEEecC
Q 004585 458 ---VSKARAIIVLAS 469 (744)
Q Consensus 458 ---I~~A~aVIiltd 469 (744)
....|.+|..+.
T Consensus 79 ~~~~~~id~vi~~ag 93 (239)
T PRK07666 79 KNELGSIDILINNAG 93 (239)
T ss_pred HHHcCCccEEEEcCc
Confidence 135778877664
No 184
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=79.72 E-value=3.1 Score=47.19 Aligned_cols=73 Identities=11% Similarity=0.124 Sum_probs=49.5
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~ 720 (744)
.-++|+|+|+|.+|..+++.+... |.+|.+++.+| .|+......| ..+ . + ++++ +.
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~---Ga~ViV~d~dp--~r~~~A~~~G--------~~v--~--~------leea-l~ 249 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGM---GARVIVTEVDP--IRALEAAMDG--------FRV--M--T------MEEA-AK 249 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhC---cCEEEEEeCCh--hhHHHHHhcC--------CEe--C--C------HHHH-Hh
Confidence 456999999999999999999865 88999998765 4443332212 222 1 1 1121 45
Q ss_pred CcceEEEecCchhhhhh
Q 004585 721 TFDSMSHWKTRLCILTH 737 (744)
Q Consensus 721 ~~DavIilTde~ni~t~ 737 (744)
.+|.+|..|...+++..
T Consensus 250 ~aDVVItaTG~~~vI~~ 266 (406)
T TIGR00936 250 IGDIFITATGNKDVIRG 266 (406)
T ss_pred cCCEEEECCCCHHHHHH
Confidence 68999888866666653
No 185
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=79.47 E-value=2.5 Score=41.29 Aligned_cols=76 Identities=22% Similarity=0.196 Sum_probs=46.2
Q ss_pred eEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhc-c-cCCCcEEEEEeCCCCHHHHhccCcccc
Q 004585 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF-D-FMGTSVICRSGSPLILADLKKVSVSKA 461 (744)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~-~-~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (744)
+|.|||.|..|..++..|...+ +.|.|-.++++.++.+.+.... . +.+.... .+..-..+|+++ +++|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g------~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~---~~i~~t~dl~~a-~~~a 70 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG------HEVTLWGRDEEQIEEINETRQNPKYLPGIKLP---ENIKATTDLEEA-LEDA 70 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT------EEEEEETSCHHHHHHHHHHTSETTTSTTSBEE---TTEEEESSHHHH-HTT-
T ss_pred CEEEECcCHHHHHHHHHHHHcC------CEEEEEeccHHHHHHHHHhCCCCCCCCCcccC---cccccccCHHHH-hCcc
Confidence 4889999999999999998654 8999999999888776553210 0 1111110 000011234332 5688
Q ss_pred cEEEEecC
Q 004585 462 RAIIVLAS 469 (744)
Q Consensus 462 ~aVIiltd 469 (744)
|.||+..+
T Consensus 71 d~IiiavP 78 (157)
T PF01210_consen 71 DIIIIAVP 78 (157)
T ss_dssp SEEEE-S-
T ss_pred cEEEeccc
Confidence 99998885
No 186
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=79.42 E-value=5.6 Score=43.74 Aligned_cols=82 Identities=12% Similarity=0.111 Sum_probs=54.5
Q ss_pred CCceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcC--CCCcCCCCCceEEEEEcCcCCHhhHhcC
Q 004585 641 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDG--GLDISGLMNIKLVHREGNAVIRRHLESL 717 (744)
Q Consensus 641 ~~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~--g~~~~~L~n~~V~~i~GD~td~~~L~e~ 717 (744)
..++|+|.|+ |=+|..+++.|-+. |.+|+.++..+. ..+..+.+. +....... .+.++.||..|.+.|+++
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~---g~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~Di~d~~~l~~~ 87 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFL---NQTVIGLDNFST-GYQHNLDDVRTSVSEEQWS--RFIFIQGDIRKFTDCQKA 87 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHC---CCEEEEEeCCCC-cchhhhhhhhhccccccCC--ceEEEEccCCCHHHHHHH
Confidence 3478999998 99999999999764 889998875321 111111110 00000112 245688999999888775
Q ss_pred CCCCcceEEEec
Q 004585 718 PLETFDSMSHWK 729 (744)
Q Consensus 718 ~I~~~DavIilT 729 (744)
++.+|.||-++
T Consensus 88 -~~~~d~ViHlA 98 (348)
T PRK15181 88 -CKNVDYVLHQA 98 (348)
T ss_pred -hhCCCEEEECc
Confidence 56799999886
No 187
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.38 E-value=4 Score=47.06 Aligned_cols=34 Identities=9% Similarity=0.023 Sum_probs=29.4
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~ 677 (744)
..++|+|+|+|..|..+++.|.+ .|.+|++++..
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~---~G~~V~~~d~~ 48 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLE---LGARVTVVDDG 48 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---CCCEEEEEeCC
Confidence 45689999999999999998876 48999999864
No 188
>PRK06182 short chain dehydrogenase; Validated
Probab=79.36 E-value=5.4 Score=41.85 Aligned_cols=74 Identities=20% Similarity=0.045 Sum_probs=54.0
Q ss_pred CeEEEEccc-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC----
Q 004585 383 NHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (744)
Q Consensus 383 ~HIII~G~g-~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (744)
..++|.|.+ ..|..++++|...+ +.|+++.++++.++.... .++.++.+|.++++.++++-
T Consensus 4 k~vlItGasggiG~~la~~l~~~G------~~V~~~~r~~~~l~~~~~--------~~~~~~~~Dv~~~~~~~~~~~~~~ 69 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQG------YTVYGAARRVDKMEDLAS--------LGVHPLSLDVTDEASIKAAVDTII 69 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHh--------CCCeEEEeeCCCHHHHHHHHHHHH
Confidence 578999974 46999999998643 678888888877654422 24778999999999887652
Q ss_pred --cccccEEEEecCC
Q 004585 458 --VSKARAIIVLASD 470 (744)
Q Consensus 458 --I~~A~aVIiltdd 470 (744)
....|.+|-.+.-
T Consensus 70 ~~~~~id~li~~ag~ 84 (273)
T PRK06182 70 AEEGRIDVLVNNAGY 84 (273)
T ss_pred HhcCCCCEEEECCCc
Confidence 1256888877653
No 189
>PRK08643 acetoin reductase; Validated
Probab=79.36 E-value=6.9 Score=40.46 Aligned_cols=79 Identities=14% Similarity=0.085 Sum_probs=53.7
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC----
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (744)
..++|+|.+. .|..+++.|.+.+ ..|++++++++..+....++.. .+.++.++.+|.++++.++++-
T Consensus 3 k~~lItGas~giG~~la~~l~~~G------~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~ 74 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDG------FKVAIVDYNEETAQAAADKLSK--DGGKAIAVKADVSDRDQVFAAVRQVV 74 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 4788888766 5889999998643 5788888887666555443211 1346778899999998766531
Q ss_pred --cccccEEEEecC
Q 004585 458 --VSKARAIIVLAS 469 (744)
Q Consensus 458 --I~~A~aVIiltd 469 (744)
..+.|.+|-++.
T Consensus 75 ~~~~~id~vi~~ag 88 (256)
T PRK08643 75 DTFGDLNVVVNNAG 88 (256)
T ss_pred HHcCCCCEEEECCC
Confidence 134677777664
No 190
>PLN02650 dihydroflavonol-4-reductase
Probab=79.31 E-value=6.4 Score=43.14 Aligned_cols=78 Identities=15% Similarity=0.124 Sum_probs=52.7
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCC--CceEEEEEcCcCCHhhHhcCC
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM--NIKLVHREGNAVIRRHLESLP 718 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~--n~~V~~i~GD~td~~~L~e~~ 718 (744)
.++|||.|+ |-+|..+++.|.+ .|.+|.++...+ +....+.+. . .+. +..+.++.||.+|.+.+++.
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~---~G~~V~~~~r~~--~~~~~~~~~-~---~~~~~~~~~~~v~~Dl~d~~~~~~~- 74 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLE---RGYTVRATVRDP--ANVKKVKHL-L---DLPGATTRLTLWKADLAVEGSFDDA- 74 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHH---CCCEEEEEEcCc--chhHHHHHH-H---hccCCCCceEEEEecCCChhhHHHH-
Confidence 458999998 8999999999976 488888776543 222221110 0 011 11355689999999888775
Q ss_pred CCCcceEEEec
Q 004585 719 LETFDSMSHWK 729 (744)
Q Consensus 719 I~~~DavIilT 729 (744)
++.+|.|+-++
T Consensus 75 ~~~~d~ViH~A 85 (351)
T PLN02650 75 IRGCTGVFHVA 85 (351)
T ss_pred HhCCCEEEEeC
Confidence 56789999876
No 191
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=79.23 E-value=7.7 Score=41.82 Aligned_cols=79 Identities=11% Similarity=0.077 Sum_probs=52.1
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCch-HHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCC
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEK-EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~-er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I 719 (744)
.+++||.|+ |-+|..+++.|.+ .|.+|.++..++.. +....+.... .. ...+..+.||.+|++.+++. +
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~---~G~~V~~~~r~~~~~~~~~~~~~~~----~~-~~~~~~~~~D~~d~~~~~~~-~ 75 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLF---RGYTINATVRDPKDRKKTDHLLALD----GA-KERLKLFKADLLDEGSFELA-I 75 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHH---CCCEEEEEEcCCcchhhHHHHHhcc----CC-CCceEEEeCCCCCchHHHHH-H
Confidence 468999998 7899999999976 48888876543321 1111111100 00 12344588999999988775 5
Q ss_pred CCcceEEEec
Q 004585 720 ETFDSMSHWK 729 (744)
Q Consensus 720 ~~~DavIilT 729 (744)
+..|.+|-++
T Consensus 76 ~~~d~vih~A 85 (325)
T PLN02989 76 DGCETVFHTA 85 (325)
T ss_pred cCCCEEEEeC
Confidence 5689998877
No 192
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=79.19 E-value=20 Score=32.55 Aligned_cols=71 Identities=18% Similarity=0.139 Sum_probs=48.9
Q ss_pred eEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCcccccE
Q 004585 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (744)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~a 463 (744)
++.|+|.|..+...+..+..... +...+-++|.+++..+...+++ ++. . .++.+.|.+.. +.|+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~---~~~v~~v~d~~~~~~~~~~~~~-------~~~-~---~~~~~~ll~~~--~~D~ 65 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSP---DFEVVAVCDPDPERAEAFAEKY-------GIP-V---YTDLEELLADE--DVDA 65 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTT---TEEEEEEECSSHHHHHHHHHHT-------TSE-E---ESSHHHHHHHT--TESE
T ss_pred EEEEECCcHHHHHHHHHHHhcCC---CcEEEEEEeCCHHHHHHHHHHh-------ccc-c---hhHHHHHHHhh--cCCE
Confidence 68999999999988888876531 2255668899998877765543 222 2 23455554433 7999
Q ss_pred EEEecCC
Q 004585 464 IIVLASD 470 (744)
Q Consensus 464 VIiltdd 470 (744)
|++.+++
T Consensus 66 V~I~tp~ 72 (120)
T PF01408_consen 66 VIIATPP 72 (120)
T ss_dssp EEEESSG
T ss_pred EEEecCC
Confidence 9999963
No 193
>PLN00203 glutamyl-tRNA reductase
Probab=79.07 E-value=4.1 Score=47.75 Aligned_cols=71 Identities=13% Similarity=0.145 Sum_probs=49.3
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCC-EEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004585 642 PEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (744)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~~~~gs-~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~ 720 (744)
.++|+|+|.|..|..+++.|... |. +|++++. +.+|.+.+++ .+.+..+.. ...+.+.+ .+.
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~---G~~~V~V~nR--s~era~~La~------~~~g~~i~~-----~~~~dl~~-al~ 328 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSK---GCTKMVVVNR--SEERVAALRE------EFPDVEIIY-----KPLDEMLA-CAA 328 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhC---CCCeEEEEeC--CHHHHHHHHH------HhCCCceEe-----ecHhhHHH-HHh
Confidence 56899999999999999999753 64 7999986 4588888875 233322211 12223332 367
Q ss_pred CcceEEEec
Q 004585 721 TFDSMSHWK 729 (744)
Q Consensus 721 ~~DavIilT 729 (744)
++|.||..|
T Consensus 329 ~aDVVIsAT 337 (519)
T PLN00203 329 EADVVFTST 337 (519)
T ss_pred cCCEEEEcc
Confidence 899999988
No 194
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=79.07 E-value=4.2 Score=44.12 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=30.0
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCC
Q 004585 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 678 (744)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p 678 (744)
.++++|+|.|..|..++..|... |.+|++++..+
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~---Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKAL---GANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC---CCEEEEEECCH
Confidence 47999999999999999999864 88999998754
No 195
>PRK06500 short chain dehydrogenase; Provisional
Probab=79.05 E-value=7.6 Score=39.75 Aligned_cols=77 Identities=21% Similarity=0.210 Sum_probs=52.7
Q ss_pred cCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhcc----
Q 004585 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (744)
Q Consensus 382 k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA---- 456 (744)
..+++|.|.+. .|..++++|...+ ..|++++++++..++..++. +.++.++++|.++.+.+.++
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g------~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 74 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEG------ARVAITGRDPASLEAARAEL-----GESALVIRADAGDVAAQKALAQAL 74 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC------CEEEEecCCHHHHHHHHHHh-----CCceEEEEecCCCHHHHHHHHHHH
Confidence 35799999755 6889999998653 57888888876666554432 33577888998888775542
Q ss_pred --CcccccEEEEecC
Q 004585 457 --SVSKARAIIVLAS 469 (744)
Q Consensus 457 --gI~~A~aVIiltd 469 (744)
...+.|.+|-.+.
T Consensus 75 ~~~~~~id~vi~~ag 89 (249)
T PRK06500 75 AEAFGRLDAVFINAG 89 (249)
T ss_pred HHHhCCCCEEEECCC
Confidence 1134577776654
No 196
>PLN02214 cinnamoyl-CoA reductase
Probab=79.04 E-value=16 Score=40.09 Aligned_cols=80 Identities=15% Similarity=0.098 Sum_probs=53.7
Q ss_pred cCeEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHH-HHHhhhcccCCCcEEEEEeCCCCHHHHhccCcc
Q 004585 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEM-DIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (744)
Q Consensus 382 k~HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~-~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~ 459 (744)
.++|+|.|. |-.|..++++|.+.+ +.|+.+.++.+.... .+.... . ...++.++.||.++.+.+.++ ++
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G------~~V~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~~~Dl~d~~~~~~~-~~ 80 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERG------YTVKGTVRNPDDPKNTHLRELE-G-GKERLILCKADLQDYEALKAA-ID 80 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc------CEEEEEeCCchhhhHHHHHHhh-C-CCCcEEEEecCcCChHHHHHH-Hh
Confidence 357999998 567999999998754 567666665433211 111110 0 113578899999999998775 45
Q ss_pred cccEEEEecCC
Q 004585 460 KARAIIVLASD 470 (744)
Q Consensus 460 ~A~aVIiltdd 470 (744)
.+|.||-++..
T Consensus 81 ~~d~Vih~A~~ 91 (342)
T PLN02214 81 GCDGVFHTASP 91 (342)
T ss_pred cCCEEEEecCC
Confidence 68999988864
No 197
>PRK07074 short chain dehydrogenase; Provisional
Probab=79.04 E-value=8 Score=39.99 Aligned_cols=77 Identities=13% Similarity=0.050 Sum_probs=55.0
Q ss_pred eEEEEccc-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCc----
Q 004585 384 HILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV---- 458 (744)
Q Consensus 384 HIII~G~g-~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI---- 458 (744)
.++|.|.+ ..|..+++.|.+.+ ..|++++++++..+...++. .+..+.++.+|..+.+.++++--
T Consensus 4 ~ilItGat~~iG~~la~~L~~~g------~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (257)
T PRK07074 4 TALVTGAAGGIGQALARRFLAAG------DRVLALDIDAAALAAFADAL----GDARFVPVACDLTDAASLAAALANAAA 73 (257)
T ss_pred EEEEECCcchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHh----cCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 57888874 57999999998643 56888888887766554432 23467889999999998865422
Q ss_pred --ccccEEEEecCC
Q 004585 459 --SKARAIIVLASD 470 (744)
Q Consensus 459 --~~A~aVIiltdd 470 (744)
...|.+|-.+..
T Consensus 74 ~~~~~d~vi~~ag~ 87 (257)
T PRK07074 74 ERGPVDVLVANAGA 87 (257)
T ss_pred HcCCCCEEEECCCC
Confidence 246888887754
No 198
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=78.86 E-value=5.2 Score=42.94 Aligned_cols=81 Identities=17% Similarity=0.079 Sum_probs=51.9
Q ss_pred CeEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCcccc
Q 004585 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (744)
Q Consensus 383 ~HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (744)
..|+|.|. |-.|..++++|...+ +.|+++.++.+............-...++.++.||..+++.+.++ ++++
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~ 77 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRG------YTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSV-VDGC 77 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCC------CEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHH-HcCC
Confidence 47999996 667999999998754 566665555432211100000000123678899999999888765 4568
Q ss_pred cEEEEecCC
Q 004585 462 RAIIVLASD 470 (744)
Q Consensus 462 ~aVIiltdd 470 (744)
|.||-++..
T Consensus 78 d~Vih~A~~ 86 (322)
T PLN02662 78 EGVFHTASP 86 (322)
T ss_pred CEEEEeCCc
Confidence 999888754
No 199
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=78.80 E-value=23 Score=30.90 Aligned_cols=80 Identities=14% Similarity=0.098 Sum_probs=49.6
Q ss_pred eEEEEcccccHHHHHHHHHHhcccCCCCeEEEEE-cCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCccccc
Q 004585 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (744)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLi-d~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~ 462 (744)
+|-|+|.|+.|..+++.|...+. ..+.|.++ +++++..++..+++ .+.+... ++.+.++ +||
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~---~~~~v~~~~~r~~~~~~~~~~~~-------~~~~~~~--~~~~~~~-----~ad 63 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGI---KPHEVIIVSSRSPEKAAELAKEY-------GVQATAD--DNEEAAQ-----EAD 63 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS----GGEEEEEEESSHHHHHHHHHHC-------TTEEESE--EHHHHHH-----HTS
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---CceeEEeeccCcHHHHHHHHHhh-------ccccccC--ChHHhhc-----cCC
Confidence 46789999999999999987642 22456645 99999888776543 1222211 2333333 788
Q ss_pred EEEEecCCCCCCcchHHHHHHHH
Q 004585 463 AIIVLASDENADQSDARALRVVL 485 (744)
Q Consensus 463 aVIiltdd~~~~~sD~~NI~~~L 485 (744)
.||+.... .+...+...+
T Consensus 64 vvilav~p-----~~~~~v~~~i 81 (96)
T PF03807_consen 64 VVILAVKP-----QQLPEVLSEI 81 (96)
T ss_dssp EEEE-S-G-----GGHHHHHHHH
T ss_pred EEEEEECH-----HHHHHHHHHH
Confidence 99998863 4555554444
No 200
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=78.65 E-value=7.5 Score=40.60 Aligned_cols=80 Identities=16% Similarity=0.066 Sum_probs=55.5
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC----
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (744)
.+++|.|.+. .|..++++|.+.+ ..|++.+++++..++..+.+. -.+.++.++.+|.++++.++++-
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G------~~vv~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 82 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAG------ATIVFNDINQELVDKGLAAYR--ELGIEAHGYVCDVTDEDGVQAMVSQIE 82 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC------CeEEEEeCCHHHHHHHHHHHH--hcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 4788888866 5889999998654 567788888777666544321 11346888999999999877642
Q ss_pred --cccccEEEEecCC
Q 004585 458 --VSKARAIIVLASD 470 (744)
Q Consensus 458 --I~~A~aVIiltdd 470 (744)
...-|.+|..+.-
T Consensus 83 ~~~~~id~li~~ag~ 97 (265)
T PRK07097 83 KEVGVIDILVNNAGI 97 (265)
T ss_pred HhCCCCCEEEECCCC
Confidence 2346777776643
No 201
>PLN03223 Polycystin cation channel protein; Provisional
Probab=78.59 E-value=35 Score=43.95 Aligned_cols=55 Identities=16% Similarity=0.117 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHhhhcCCCCC-----C-C----CCccChhh-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004585 312 SSFAEALWLSWTFVADSGNHA-----D-R----VGTGPRIV-SVSISSGGMLIFAMMLGLVSDAISEK 368 (744)
Q Consensus 312 ~s~~dA~y~~~~tltTvGygd-----~-~----~t~~gRi~-~v~lil~Gi~i~a~lig~It~~i~~~ 368 (744)
.+|..+++-.+..+. |-.+ . . ....|.++ ..+++++.++++-+++++|.+.+.+-
T Consensus 1360 STf~sSL~TLFqMLL--GDfdYF~eDLk~l~e~nrVLGPIYFfSFILLV~FILLNMFIAII~DSFsEV 1425 (1634)
T PLN03223 1360 SDMTDSINSLFENLL--GDITYFNEDLKNLTGLQFVVGMIYFYSYNIFVFMILFNFLLAIICDAFGEV 1425 (1634)
T ss_pred cCHHHHHHHHHHHHH--cCchHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777776665554 3222 1 1 12345554 44555666677789999998888775
No 202
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=78.56 E-value=5.9 Score=37.76 Aligned_cols=83 Identities=8% Similarity=0.019 Sum_probs=51.9
Q ss_pred eEEEEcccchHHHHHHHHHhhcCCCC-EEEEEccCCchH-----------------HHHHhhcCCCCcCCCCCceEEEEE
Q 004585 644 KILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEKE-----------------REKKLTDGGLDISGLMNIKLVHRE 705 (744)
Q Consensus 644 rILI~Gwg~~g~~l~~~L~~~~~~gs-~v~IIe~~p~~e-----------------r~~~l~~~g~~~~~L~n~~V~~i~ 705 (744)
+|+|+|.|..|..+++.|... |. ++++++.+.-++ |.+.+++. + ....+++.+..+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~---Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~-l-~~~~p~v~i~~~~ 75 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS---GVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARR-L-NELNPGVNVTAVP 75 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC---CCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHH-H-HHHCCCcEEEEEe
Confidence 589999999999999999763 55 799998652111 11111110 0 0112467776666
Q ss_pred cCcCCHhhHhcCCCCCcceEEEecCchh
Q 004585 706 GNAVIRRHLESLPLETFDSMSHWKTRLC 733 (744)
Q Consensus 706 GD~td~~~L~e~~I~~~DavIilTde~n 733 (744)
.+...... .+-+..+|.+|..+|...
T Consensus 76 ~~~~~~~~--~~~~~~~diVi~~~d~~~ 101 (143)
T cd01483 76 EGISEDNL--DDFLDGVDLVIDAIDNIA 101 (143)
T ss_pred eecChhhH--HHHhcCCCEEEECCCCHH
Confidence 66655433 233578999998887644
No 203
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=78.55 E-value=6.6 Score=43.61 Aligned_cols=68 Identities=16% Similarity=0.226 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCC-HHHHHHHHHHhhhcCCCCCC---C-CCcc---ChhhhhHHHHHH-HHHHHH
Q 004585 289 LALLFATIFLIIFGGLALYAVSDSS-FAEALWLSWTFVADSGNHAD---R-VGTG---PRIVSVSISSGG-MLIFAM 356 (744)
Q Consensus 289 l~L~~~~l~lil~g~l~~~~ie~~s-~~dA~y~~~~tltTvGygd~---~-~t~~---gRi~~v~lil~G-i~i~a~ 356 (744)
..++++.+++++++++.+...+... +.++++-++..+.|+|.+-. + -+.. ++++.+++|+.| +-++++
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lfe~~Sa~gtvGls~G~~~~~~s~~~~~~K~vli~~M~~GRle~~~~ 345 (354)
T PF02386_consen 269 FAFFFLYFIIVFISTLLLSLDGLDFSFFDALFEVISAFGTVGLSLGITTPNLSFSGPFSKLVLIFLMLLGRLEILPV 345 (354)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSS-H--HHHHHHHHHHCTT--S--SSS----SSS-HHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcCcCCCCCCCCCCccchhhHHHHHHHHHHHHhCccHHHH
Confidence 3444445555666666665555443 79999999999999987432 2 3344 888877777776 444443
No 204
>PRK07326 short chain dehydrogenase; Provisional
Probab=78.42 E-value=5 Score=40.81 Aligned_cols=77 Identities=10% Similarity=0.007 Sum_probs=52.8
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCC-ceEEEEEcCcCCHhhHhcC--
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMN-IKLVHREGNAVIRRHLESL-- 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n-~~V~~i~GD~td~~~L~e~-- 717 (744)
.++++|.|+ |.+|..+++.|.+ .|.+|.++...+ ++.+.+.+ .+.. ..+..+.+|.+|++.+++.
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~---~g~~V~~~~r~~--~~~~~~~~------~l~~~~~~~~~~~D~~~~~~~~~~~~ 74 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLA---EGYKVAITARDQ--KELEEAAA------ELNNKGNVLGLAADVRDEADVQRAVD 74 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHH---CCCEEEEeeCCH--HHHHHHHH------HHhccCcEEEEEccCCCHHHHHHHHH
Confidence 368999997 7899999999975 488999998654 44443332 1110 2355688999999887542
Q ss_pred ----CCCCcceEEEec
Q 004585 718 ----PLETFDSMSHWK 729 (744)
Q Consensus 718 ----~I~~~DavIilT 729 (744)
.....|.+|..+
T Consensus 75 ~~~~~~~~~d~vi~~a 90 (237)
T PRK07326 75 AIVAAFGGLDVLIANA 90 (237)
T ss_pred HHHHHcCCCCEEEECC
Confidence 124678888665
No 205
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=78.41 E-value=7.3 Score=41.63 Aligned_cols=43 Identities=19% Similarity=0.140 Sum_probs=34.9
Q ss_pred eEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCC
Q 004585 644 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGL 691 (744)
Q Consensus 644 rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~ 691 (744)
+|.|+|.|.+|..++..|.+. |.+|++++.+ .++++.+.+.|+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~---g~~V~~~~r~--~~~~~~~~~~g~ 44 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA---GHDVTLVARR--GAHLDALNENGL 44 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC---CCeEEEEECC--hHHHHHHHHcCC
Confidence 699999999999999999864 8899999963 467777765443
No 206
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=78.16 E-value=8 Score=39.99 Aligned_cols=80 Identities=14% Similarity=0.071 Sum_probs=53.6
Q ss_pred cCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhcc----
Q 004585 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (744)
Q Consensus 382 k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA---- 456 (744)
.+.++|.|.+. .|..++++|.+.+ ..|++++++++..+...+++.. .+.++.++.+|.++++.+.++
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G------~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAG------AHVLVNGRNAATLEAAVAALRA--AGGAAEALAFDIADEEAVAAAFARI 82 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcC------CeEEEEeCCHHHHHHHHHHHHh--cCCceEEEEccCCCHHHHHHHHHHH
Confidence 35788888755 5888999998643 5788889887766655443211 234578899999999887664
Q ss_pred --CcccccEEEEecC
Q 004585 457 --SVSKARAIIVLAS 469 (744)
Q Consensus 457 --gI~~A~aVIiltd 469 (744)
...+.|.+|-...
T Consensus 83 ~~~~~~id~vi~~ag 97 (256)
T PRK06124 83 DAEHGRLDILVNNVG 97 (256)
T ss_pred HHhcCCCCEEEECCC
Confidence 1123466666554
No 207
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=78.14 E-value=5 Score=45.13 Aligned_cols=78 Identities=12% Similarity=0.013 Sum_probs=52.4
Q ss_pred CCCceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHH----HHHhhcCCCCcCCCCCceEEEEEcCcCCHhhH
Q 004585 640 KYPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKER----EKKLTDGGLDISGLMNIKLVHREGNAVIRRHL 714 (744)
Q Consensus 640 ~~~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er----~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L 714 (744)
....+|+|.|+ |.+|..++++|.+ .|.+|+++...+..-. .+.+.+ ..+++. ++.||.+|.+.+
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~---~G~~V~~l~R~~~~~~~~~~~~~~~~------~~~~v~--~v~~Dl~d~~~l 126 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVR---RGYNVVAVAREKSGIRGKNGKEDTKK------ELPGAE--VVFGDVTDADSL 126 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHH---CCCEEEEEEechhhccccchhhHHhh------hcCCce--EEEeeCCCHHHH
Confidence 34568999998 8899999999976 4889999886432100 011111 123444 589999999998
Q ss_pred hcC--CCC-CcceEEEe
Q 004585 715 ESL--PLE-TFDSMSHW 728 (744)
Q Consensus 715 ~e~--~I~-~~DavIil 728 (744)
++. ++. .+|.|+..
T Consensus 127 ~~~~~~~~~~~D~Vi~~ 143 (390)
T PLN02657 127 RKVLFSEGDPVDVVVSC 143 (390)
T ss_pred HHHHHHhCCCCcEEEEC
Confidence 874 111 58998864
No 208
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=78.12 E-value=8 Score=40.03 Aligned_cols=81 Identities=11% Similarity=0.060 Sum_probs=53.5
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCc---
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI--- 458 (744)
+.++|.|.+. .|..+++.|.+.+ ..|++++++++..+...+++.......++.++.+|.++++.++++--
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g------~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~ 76 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEG------YRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVD 76 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHH
Confidence 4588888865 5889999998643 67888888876655544332111111357889999999888776421
Q ss_pred ---ccccEEEEecC
Q 004585 459 ---SKARAIIVLAS 469 (744)
Q Consensus 459 ---~~A~aVIiltd 469 (744)
...|.+|-++.
T Consensus 77 ~~~~~id~vv~~ag 90 (259)
T PRK12384 77 EIFGRVDLLVYNAG 90 (259)
T ss_pred HHcCCCCEEEECCC
Confidence 24577777664
No 209
>PRK09242 tropinone reductase; Provisional
Probab=78.02 E-value=8.2 Score=39.98 Aligned_cols=81 Identities=15% Similarity=0.082 Sum_probs=53.9
Q ss_pred CeEEEEccc-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC----
Q 004585 383 NHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (744)
Q Consensus 383 ~HIII~G~g-~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (744)
+.++|.|.+ ..|..++++|.+.+ ..|+++.++++..++..+++.....+.++.++.+|.++++.++++-
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G------~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLG------ADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVE 83 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 467888875 46899999998653 5788888888776665544321112346788899999987765431
Q ss_pred --cccccEEEEecC
Q 004585 458 --VSKARAIIVLAS 469 (744)
Q Consensus 458 --I~~A~aVIiltd 469 (744)
..+-|.+|..+.
T Consensus 84 ~~~g~id~li~~ag 97 (257)
T PRK09242 84 DHWDGLHILVNNAG 97 (257)
T ss_pred HHcCCCCEEEECCC
Confidence 124577776664
No 210
>PRK05875 short chain dehydrogenase; Provisional
Probab=77.95 E-value=8.7 Score=40.26 Aligned_cols=82 Identities=12% Similarity=0.100 Sum_probs=55.0
Q ss_pred cCeEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCc--
Q 004585 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (744)
Q Consensus 382 k~HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI-- 458 (744)
.+.++|.|. |..|..+++.|.+.+ ..|+++.++++..+...+++.......++.++.+|..+++.++++--
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G------~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAG------AAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAA 80 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC------CeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHH
Confidence 468899997 457999999998653 57888888876655544332100012357788999999887766411
Q ss_pred ----ccccEEEEecC
Q 004585 459 ----SKARAIIVLAS 469 (744)
Q Consensus 459 ----~~A~aVIiltd 469 (744)
...|.+|-.+.
T Consensus 81 ~~~~~~~d~li~~ag 95 (276)
T PRK05875 81 TAWHGRLHGVVHCAG 95 (276)
T ss_pred HHHcCCCCEEEECCC
Confidence 25688887764
No 211
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=77.94 E-value=3.5 Score=47.64 Aligned_cols=35 Identities=17% Similarity=0.348 Sum_probs=30.4
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 678 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p 678 (744)
.-++++|+|+|++|..+++.+..+ |.+|.+.+.+|
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~---Ga~ViV~e~dp 287 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGF---GARVVVTEIDP 287 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCCc
Confidence 457899999999999999999865 88999998654
No 212
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=77.87 E-value=4.5 Score=46.44 Aligned_cols=71 Identities=20% Similarity=0.142 Sum_probs=47.9
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCC
Q 004585 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (744)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~~ 721 (744)
.++|+|+|+|+.|..+++.|.+. |..|++.+..+..+..+.... .++++.+ ..|.-.+ +...+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~---G~~v~v~D~~~~~~~~~~~~~------~~~~i~~--~~g~~~~------~~~~~ 69 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKL---GAEVTVSDDRPAPEGLAAQPL------LLEGIEV--ELGSHDD------EDLAE 69 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHC---CCeEEEEcCCCCccchhhhhh------hccCcee--ecCccch------hcccc
Confidence 57899999999999999999874 999999998765522221110 2345443 3443333 55677
Q ss_pred cceEEEec
Q 004585 722 FDSMSHWK 729 (744)
Q Consensus 722 ~DavIilT 729 (744)
+|.||.-.
T Consensus 70 ~d~vV~SP 77 (448)
T COG0771 70 FDLVVKSP 77 (448)
T ss_pred CCEEEECC
Confidence 78777644
No 213
>PRK06197 short chain dehydrogenase; Provisional
Probab=77.86 E-value=7 Score=41.92 Aligned_cols=82 Identities=18% Similarity=0.120 Sum_probs=55.5
Q ss_pred cCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC---
Q 004585 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (744)
Q Consensus 382 k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (744)
...++|.|.+. .|..++++|...+ ..|+++.++++..+...+++.....+.++.++.+|.++.+.++++-
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~G------~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~ 89 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAKG------AHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADAL 89 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHH
Confidence 35788888754 6899999998753 5677888877665544433211112346788999999999877641
Q ss_pred ---cccccEEEEecC
Q 004585 458 ---VSKARAIIVLAS 469 (744)
Q Consensus 458 ---I~~A~aVIiltd 469 (744)
..+.|.+|-.+.
T Consensus 90 ~~~~~~iD~li~nAg 104 (306)
T PRK06197 90 RAAYPRIDLLINNAG 104 (306)
T ss_pred HhhCCCCCEEEECCc
Confidence 235688887764
No 214
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=77.85 E-value=12 Score=45.73 Aligned_cols=61 Identities=11% Similarity=0.096 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhhhhhhcc-------CC----CHHHHHHHHHHhhhcCCCCCCC---CCccChhhhhHHHHHHHH
Q 004585 291 LLFATIFLIIFGGLALYAVS-------DS----SFAEALWLSWTFVADSGNHADR---VGTGPRIVSVSISSGGML 352 (744)
Q Consensus 291 L~~~~l~lil~g~l~~~~ie-------~~----s~~dA~y~~~~tltTvGygd~~---~t~~gRi~~v~lil~Gi~ 352 (744)
+++.+++++++|+++++.+| +. -+.+||++++.+ -|.|+.-.+ .+.+..++.+++|.+|..
T Consensus 587 ll~tt~iL~~ig~ilf~lLE~nn~tl~~lp~g~Ril~aLFQSVst-RTAGFntVdls~Lspatlvl~iiLMyIGa~ 661 (800)
T TIGR00934 587 LFFTLVGLNAIDLILFIILDWGSSVVDGLSKGIKVLNGLFQSVST-RTAGFTVVDLSQLHPAIQVSYMLMMYVSVL 661 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHhccc-ccccccccchHhcChhHHHHHHHHHHhccC
Confidence 34556677788888888776 22 378888888654 678997654 344566667777766644
No 215
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=77.83 E-value=3.7 Score=44.07 Aligned_cols=68 Identities=22% Similarity=0.128 Sum_probs=48.6
Q ss_pred cccchHHHHHHHHHhhcCCC--CEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCCcceEE
Q 004585 649 GWRRDIDDMIMVLEAFLAPG--SELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFDSMS 726 (744)
Q Consensus 649 Gwg~~g~~l~~~L~~~~~~g--s~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~~~DavI 726 (744)
|.|-+|..++++|-+. | .+|++++..+.....+.+. .++... +++||.+|++.|+++ ++.+|.|+
T Consensus 5 gsGflG~~iv~~Ll~~---g~~~~Vr~~d~~~~~~~~~~~~-------~~~~~~--~~~~Di~d~~~l~~a-~~g~d~V~ 71 (280)
T PF01073_consen 5 GSGFLGSHIVRQLLER---GYIYEVRVLDRSPPPKFLKDLQ-------KSGVKE--YIQGDITDPESLEEA-LEGVDVVF 71 (280)
T ss_pred CCcHHHHHHHHHHHHC---CCceEEEEcccccccccchhhh-------ccccee--EEEeccccHHHHHHH-hcCCceEE
Confidence 4588999999999764 6 7888888654332212221 222222 589999999999997 88899998
Q ss_pred Eec
Q 004585 727 HWK 729 (744)
Q Consensus 727 ilT 729 (744)
-++
T Consensus 72 H~A 74 (280)
T PF01073_consen 72 HTA 74 (280)
T ss_pred EeC
Confidence 875
No 216
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=77.77 E-value=6.4 Score=44.13 Aligned_cols=72 Identities=13% Similarity=0.056 Sum_probs=51.5
Q ss_pred cCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCcccc
Q 004585 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (744)
Q Consensus 382 k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (744)
...++|+|.|..|...++.+...+ ..|+++|.+++..+.+...+ +.. +..+..+.+.|.++ +.+|
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lG------a~V~v~d~~~~~~~~l~~~~-----g~~---v~~~~~~~~~l~~~-l~~a 231 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLG------ATVTILDINIDRLRQLDAEF-----GGR---IHTRYSNAYEIEDA-VKRA 231 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCC------CeEEEEECCHHHHHHHHHhc-----Cce---eEeccCCHHHHHHH-HccC
Confidence 356999999999999999988653 46888999987776654322 111 22344566777766 6789
Q ss_pred cEEEEec
Q 004585 462 RAIIVLA 468 (744)
Q Consensus 462 ~aVIilt 468 (744)
|.||..+
T Consensus 232 DvVI~a~ 238 (370)
T TIGR00518 232 DLLIGAV 238 (370)
T ss_pred CEEEEcc
Confidence 9999876
No 217
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=77.57 E-value=8.3 Score=40.82 Aligned_cols=81 Identities=5% Similarity=-0.010 Sum_probs=53.6
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~ 720 (744)
+.-+++|+|.|.++..+++..... |.+|++++..+ + ...+ ..++++.. ++..++ .+.+.. +.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~l---Gf~V~v~D~R~--~---~~~~-----~~~~~~~~-~~~~~~--~~~~~~--~~ 160 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPL---PCRVTWVDSRE--A---EFPE-----DLPDGVAT-LVTDEP--EAEVAE--AP 160 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcC---CCEEEEEeCCc--c---cccc-----cCCCCceE-EecCCH--HHHHhc--CC
Confidence 445899999999999999988764 99999999643 2 2221 13445442 233332 444443 56
Q ss_pred CcceEEEec----Cchhhhhhhc
Q 004585 721 TFDSMSHWK----TRLCILTHVL 739 (744)
Q Consensus 721 ~~DavIilT----de~ni~t~~~ 739 (744)
.-|.+|++| .+.-+|.+++
T Consensus 161 ~~t~vvi~th~h~~D~~~L~~aL 183 (246)
T TIGR02964 161 PGSYFLVLTHDHALDLELCHAAL 183 (246)
T ss_pred CCcEEEEEeCChHHHHHHHHHHH
Confidence 778999999 3455666665
No 218
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=77.53 E-value=24 Score=38.53 Aligned_cols=43 Identities=26% Similarity=0.309 Sum_probs=35.4
Q ss_pred cCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHh
Q 004585 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAK 430 (744)
Q Consensus 382 k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~ 430 (744)
..-.+|.|.++ .|...++||.+. |..|+|+.+++++++....+
T Consensus 49 g~WAVVTGaTDGIGKayA~eLAkr------G~nvvLIsRt~~KL~~v~kE 92 (312)
T KOG1014|consen 49 GSWAVVTGATDGIGKAYARELAKR------GFNVVLISRTQEKLEAVAKE 92 (312)
T ss_pred CCEEEEECCCCcchHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHH
Confidence 46789999988 589999999874 46799999999998876554
No 219
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=77.49 E-value=8.8 Score=39.46 Aligned_cols=80 Identities=16% Similarity=0.025 Sum_probs=55.9
Q ss_pred CeEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCc---
Q 004585 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (744)
Q Consensus 383 ~HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI--- 458 (744)
.+++|.|. |..|..++++|...+ ..|++++++++..+....+.. -.+.++.++.+|.++++.++++--
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g------~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 76 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEG------AKVVIADLNDEAAAAAAEALQ--KAGGKAIGVAMDVTDEEAINAGIDYAV 76 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC------CeEEEEeCCHHHHHHHHHHHH--hcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 58999996 446999999998643 678888888776655443321 023467889999999998876421
Q ss_pred ---ccccEEEEecCC
Q 004585 459 ---SKARAIIVLASD 470 (744)
Q Consensus 459 ---~~A~aVIiltdd 470 (744)
...|.+|-.+..
T Consensus 77 ~~~~~~d~vi~~a~~ 91 (258)
T PRK12429 77 ETFGGVDILVNNAGI 91 (258)
T ss_pred HHcCCCCEEEECCCC
Confidence 256888876643
No 220
>PRK07102 short chain dehydrogenase; Provisional
Probab=77.44 E-value=7.8 Score=39.75 Aligned_cols=80 Identities=20% Similarity=0.154 Sum_probs=53.7
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCc---
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI--- 458 (744)
.+++|.|.+. .|..+++.|.+.+ ..|++++++++..+...++.. ...+.++.++.+|.++++.++++--
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G------~~Vi~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 74 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAG------ARLYLAARDVERLERLADDLR-ARGAVAVSTHELDILDTASHAAFLDSLP 74 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcC------CEEEEEeCCHHHHHHHHHHHH-HhcCCeEEEEecCCCChHHHHHHHHHHh
Confidence 3788998654 6899999998643 578888888876655443321 1113468889999999988776411
Q ss_pred ccccEEEEecC
Q 004585 459 SKARAIIVLAS 469 (744)
Q Consensus 459 ~~A~aVIiltd 469 (744)
++.|.+|..+.
T Consensus 75 ~~~d~vv~~ag 85 (243)
T PRK07102 75 ALPDIVLIAVG 85 (243)
T ss_pred hcCCEEEECCc
Confidence 23477776543
No 221
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=77.41 E-value=8.1 Score=41.64 Aligned_cols=78 Identities=13% Similarity=0.077 Sum_probs=52.8
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCc-hHHHHHhhc-CCCCcCCCCCceEEEEEcCcCCHhhHhcCC
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPE-KEREKKLTD-GGLDISGLMNIKLVHREGNAVIRRHLESLP 718 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~-~er~~~l~~-~g~~~~~L~n~~V~~i~GD~td~~~L~e~~ 718 (744)
.++|+|.|+ |-+|..+++.|.+ .|.+|+++..++. .++.+.+.. .+ ...+ +..++||.+|.+.++++
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~~----~~~~--~~~~~~Dl~~~~~~~~~- 74 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLL---RGYTVKATVRDLTDRKKTEHLLALDG----AKER--LKLFKADLLEESSFEQA- 74 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH---CCCEEEEEECCCcchHHHHHHHhccC----CCCc--eEEEecCCCCcchHHHH-
Confidence 368999997 8899999999976 4888886654332 123232221 00 1123 44588999999988775
Q ss_pred CCCcceEEEec
Q 004585 719 LETFDSMSHWK 729 (744)
Q Consensus 719 I~~~DavIilT 729 (744)
+..+|.++-++
T Consensus 75 ~~~~d~vih~A 85 (322)
T PLN02986 75 IEGCDAVFHTA 85 (322)
T ss_pred HhCCCEEEEeC
Confidence 45689998877
No 222
>PRK07024 short chain dehydrogenase; Provisional
Probab=77.37 E-value=8.2 Score=40.09 Aligned_cols=76 Identities=9% Similarity=0.009 Sum_probs=52.4
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCc-eEEEEEcCcCCHhhHhcC---
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNI-KLVHREGNAVIRRHLESL--- 717 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~-~V~~i~GD~td~~~L~e~--- 717 (744)
++++|.|+ |.+|..+++.|.+ .|.+|.++..+ .++.+.+.+ .++.. .+.++.+|.+|++.++++
T Consensus 3 ~~vlItGas~gIG~~la~~l~~---~G~~v~~~~r~--~~~~~~~~~------~~~~~~~~~~~~~Dl~~~~~i~~~~~~ 71 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYAR---QGATLGLVARR--TDALQAFAA------RLPKAARVSVYAADVRDADALAAAAAD 71 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHH------hcccCCeeEEEEcCCCCHHHHHHHHHH
Confidence 57999996 6789999999976 48899999864 344444433 12111 466789999998877552
Q ss_pred ---CCCCcceEEEec
Q 004585 718 ---PLETFDSMSHWK 729 (744)
Q Consensus 718 ---~I~~~DavIilT 729 (744)
.....|.+|..+
T Consensus 72 ~~~~~g~id~lv~~a 86 (257)
T PRK07024 72 FIAAHGLPDVVIANA 86 (257)
T ss_pred HHHhCCCCCEEEECC
Confidence 123468888754
No 223
>PRK06924 short chain dehydrogenase; Provisional
Probab=77.37 E-value=7.2 Score=40.12 Aligned_cols=63 Identities=16% Similarity=0.129 Sum_probs=43.4
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCCh-HHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhcc
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~-e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA 456 (744)
++++|.|.+. .|..++++|.+.+ ..|+++.+++ +.++.+.+. .+.++.++.+|.++++.++++
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g------~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~ 66 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKG------THVISISRTENKELTKLAEQ-----YNSNLTFHSLDLQDVHELETN 66 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcC------CEEEEEeCCchHHHHHHHhc-----cCCceEEEEecCCCHHHHHHH
Confidence 3789999644 6999999998653 4677777765 444443221 134677889999998887654
No 224
>PRK07890 short chain dehydrogenase; Provisional
Probab=77.31 E-value=8.5 Score=39.70 Aligned_cols=80 Identities=18% Similarity=0.146 Sum_probs=55.3
Q ss_pred cCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhcc----
Q 004585 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (744)
Q Consensus 382 k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA---- 456 (744)
.+.++|.|.+. .|..++++|.+.+ ..|++++++++..+....+... .+.++.++..|.++++.++++
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G------~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAG------ADVVLAARTAERLDEVAAEIDD--LGRRALAVPTDITDEDQCANLVALA 76 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHH--hCCceEEEecCCCCHHHHHHHHHHH
Confidence 45788999765 6899999998643 5788888888766655443210 134578899999998887653
Q ss_pred --CcccccEEEEecC
Q 004585 457 --SVSKARAIIVLAS 469 (744)
Q Consensus 457 --gI~~A~aVIiltd 469 (744)
...+.|.+|-.+.
T Consensus 77 ~~~~g~~d~vi~~ag 91 (258)
T PRK07890 77 LERFGRVDALVNNAF 91 (258)
T ss_pred HHHcCCccEEEECCc
Confidence 1235688877764
No 225
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=77.18 E-value=8.2 Score=39.43 Aligned_cols=77 Identities=16% Similarity=0.113 Sum_probs=52.2
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCc--hHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC-
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPE--KEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL- 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~--~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~- 717 (744)
.++++|.|+ |.+|..+++.|.+ .|..|.++...+. .+..+.+.+ .+..+..+.+|.+|.+.+++.
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~---~g~~V~~~~r~~~~~~~~~~~l~~--------~~~~~~~~~~Dl~~~~~~~~~~ 74 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAA---DGAEVIVVDICGDDAAATAELVEA--------AGGKARARQVDVRDRAALKAAV 74 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHHHHh--------cCCeEEEEECCCCCHHHHHHHH
Confidence 457999996 7889999999976 4889999886532 112222322 122355689999999887663
Q ss_pred -C----CCCcceEEEec
Q 004585 718 -P----LETFDSMSHWK 729 (744)
Q Consensus 718 -~----I~~~DavIilT 729 (744)
. ....|.++..+
T Consensus 75 ~~~~~~~~~~d~vi~~a 91 (251)
T PRK12826 75 AAGVEDFGRLDILVANA 91 (251)
T ss_pred HHHHHHhCCCCEEEECC
Confidence 1 23678888776
No 226
>PRK05866 short chain dehydrogenase; Provisional
Probab=77.18 E-value=7.7 Score=41.63 Aligned_cols=81 Identities=16% Similarity=0.148 Sum_probs=55.6
Q ss_pred cCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC---
Q 004585 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (744)
Q Consensus 382 k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (744)
...++|.|.+. .|..++++|...+ ..|++++++++.+++..++... .+.++.++.+|.++++.++++-
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G------~~Vi~~~R~~~~l~~~~~~l~~--~~~~~~~~~~Dl~d~~~v~~~~~~~ 111 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRG------ATVVAVARREDLLDAVADRITR--AGGDAMAVPCDLSDLDAVDALVADV 111 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHH
Confidence 35788889754 6899999998643 6788889888776665443211 1235778899999988766541
Q ss_pred ---cccccEEEEecCC
Q 004585 458 ---VSKARAIIVLASD 470 (744)
Q Consensus 458 ---I~~A~aVIiltdd 470 (744)
....|.+|-.+..
T Consensus 112 ~~~~g~id~li~~AG~ 127 (293)
T PRK05866 112 EKRIGGVDILINNAGR 127 (293)
T ss_pred HHHcCCCCEEEECCCC
Confidence 2356888776643
No 227
>PRK06196 oxidoreductase; Provisional
Probab=77.09 E-value=7.7 Score=41.90 Aligned_cols=75 Identities=15% Similarity=0.073 Sum_probs=54.5
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC----
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (744)
..++|.|.+. .|..++++|...+ +.|+++.++++..+...+++ .++.++.+|.++.+.++++-
T Consensus 27 k~vlITGasggIG~~~a~~L~~~G------~~Vv~~~R~~~~~~~~~~~l------~~v~~~~~Dl~d~~~v~~~~~~~~ 94 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQAG------AHVIVPARRPDVAREALAGI------DGVEVVMLDLADLESVRAFAERFL 94 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHh------hhCeEEEccCCCHHHHHHHHHHHH
Confidence 4788999855 6899999998754 67888888887766554432 13678999999998876642
Q ss_pred --cccccEEEEecC
Q 004585 458 --VSKARAIIVLAS 469 (744)
Q Consensus 458 --I~~A~aVIiltd 469 (744)
..+.|.+|-.+.
T Consensus 95 ~~~~~iD~li~nAg 108 (315)
T PRK06196 95 DSGRRIDILINNAG 108 (315)
T ss_pred hcCCCCCEEEECCC
Confidence 245788887664
No 228
>PRK00811 spermidine synthase; Provisional
Probab=77.08 E-value=6.8 Score=42.21 Aligned_cols=80 Identities=8% Similarity=0.028 Sum_probs=47.0
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcC--CCCcCCCCCceEEEEEcCcCCHhhHhcCC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDG--GLDISGLMNIKLVHREGNAVIRRHLESLP 718 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~--g~~~~~L~n~~V~~i~GD~td~~~L~e~~ 718 (744)
.+++||++|+|.-+ +++++.++ ....+|+++|.++ +-.+...+. .+..+.+++-.+.+++||+.. .+++ .
T Consensus 76 ~p~~VL~iG~G~G~--~~~~~l~~-~~~~~V~~VEid~--~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~--~l~~-~ 147 (283)
T PRK00811 76 NPKRVLIIGGGDGG--TLREVLKH-PSVEKITLVEIDE--RVVEVCRKYLPEIAGGAYDDPRVELVIGDGIK--FVAE-T 147 (283)
T ss_pred CCCEEEEEecCchH--HHHHHHcC-CCCCEEEEEeCCH--HHHHHHHHHhHHhccccccCCceEEEECchHH--HHhh-C
Confidence 46799999998743 23433333 2345899999754 433332220 000112234556678999865 5554 4
Q ss_pred CCCcceEEEe
Q 004585 719 LETFDSMSHW 728 (744)
Q Consensus 719 I~~~DavIil 728 (744)
-++||.|++=
T Consensus 148 ~~~yDvIi~D 157 (283)
T PRK00811 148 ENSFDVIIVD 157 (283)
T ss_pred CCcccEEEEC
Confidence 5689999984
No 229
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=77.07 E-value=5.4 Score=38.35 Aligned_cols=63 Identities=11% Similarity=0.075 Sum_probs=37.6
Q ss_pred EEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCCcce
Q 004585 645 ILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFDS 724 (744)
Q Consensus 645 ILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~~~Da 724 (744)
++|+|.|.++..+++..... |.+|++++..+ | .+++..- +...+ ..+.++...+...++
T Consensus 1 L~I~GaG~va~al~~la~~l---g~~v~v~d~r~--e-------------~~~~~~~-~~~~~--~~~~~~~~~~~~~t~ 59 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALL---GFRVTVVDPRP--E-------------RFPEADE-VICIP--PDDILEDLEIDPNTA 59 (136)
T ss_dssp EEEES-STCHHHHHHHHHHC---TEEEEEEES-C--C-------------C-TTSSE-EECSH--HHHHHHHC-S-TT-E
T ss_pred CEEEeCcHHHHHHHHHHHhC---CCEEEEEcCCc--c-------------ccCCCCc-cEecC--hHHHHhccCCCCCeE
Confidence 57999999999999988764 99999999753 2 2333332 12232 244456677888887
Q ss_pred EEEec
Q 004585 725 MSHWK 729 (744)
Q Consensus 725 vIilT 729 (744)
| ++|
T Consensus 60 V-v~t 63 (136)
T PF13478_consen 60 V-VMT 63 (136)
T ss_dssp E-E--
T ss_pred E-EEc
Confidence 6 577
No 230
>PRK07576 short chain dehydrogenase; Provisional
Probab=77.06 E-value=8 Score=40.50 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=53.5
Q ss_pred cCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC---
Q 004585 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (744)
Q Consensus 382 k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (744)
..+++|.|.+. .|..++++|... ++.|+++++++++.+...+++.. .+.++.++.+|.++++.++++-
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~i~~~~~~~ 80 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARA------GANVAVASRSQEKVDAAVAQLQQ--AGPEGLGVSADVRDYAAVEAAFAQI 80 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHH--hCCceEEEECCCCCHHHHHHHHHHH
Confidence 45899999854 688999999864 36788888887766554333211 1235678899999988876641
Q ss_pred ---cccccEEEEec
Q 004585 458 ---VSKARAIIVLA 468 (744)
Q Consensus 458 ---I~~A~aVIilt 468 (744)
....|.+|..+
T Consensus 81 ~~~~~~iD~vi~~a 94 (264)
T PRK07576 81 ADEFGPIDVLVSGA 94 (264)
T ss_pred HHHcCCCCEEEECC
Confidence 12457777655
No 231
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=77.05 E-value=8.9 Score=41.42 Aligned_cols=80 Identities=10% Similarity=0.093 Sum_probs=52.2
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCE-EEEEccCCc-hHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCC
Q 004585 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSE-LWMLNEVPE-KEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (744)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~~~~gs~-v~IIe~~p~-~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I 719 (744)
.++++|+|.|..|..++..|.+. |.. |+|++..+. .+|.+.+++. +. .......+ ...|..+.+.+++ .+
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~---G~~~V~I~~R~~~~~~~a~~l~~~-l~-~~~~~~~~--~~~d~~~~~~~~~-~~ 197 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALD---GAKEITIFNIKDDFYERAEQTAEK-IK-QEVPECIV--NVYDLNDTEKLKA-EI 197 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC---CCCEEEEEeCCchHHHHHHHHHHH-Hh-hcCCCcee--EEechhhhhHHHh-hh
Confidence 46899999999999999988753 664 999987531 2566655530 00 01122222 3467777766655 36
Q ss_pred CCcceEEEec
Q 004585 720 ETFDSMSHWK 729 (744)
Q Consensus 720 ~~~DavIilT 729 (744)
+++|.+|-.|
T Consensus 198 ~~~DilINaT 207 (289)
T PRK12548 198 ASSDILVNAT 207 (289)
T ss_pred ccCCEEEEeC
Confidence 7789999888
No 232
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=76.99 E-value=8 Score=39.94 Aligned_cols=80 Identities=11% Similarity=0.050 Sum_probs=55.1
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC----
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (744)
..++|.|.+. .|..++++|.+.+ ..|++++++++..++..+++.. .+.++.++.+|.++.+.++++-
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G------~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~ 79 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAG------AAVAIADLNQDGANAVADEINK--AGGKAIGVAMDVTNEDAVNAGIDKVA 79 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC------CeEEEEeCChHHHHHHHHHHHh--cCceEEEEECCCCCHHHHHHHHHHHH
Confidence 5789999854 6889999998653 5688888888666655443311 1345788999999999887641
Q ss_pred --cccccEEEEecCC
Q 004585 458 --VSKARAIIVLASD 470 (744)
Q Consensus 458 --I~~A~aVIiltdd 470 (744)
....|.+|-++..
T Consensus 80 ~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 80 ERFGSVDILVSNAGI 94 (262)
T ss_pred HHcCCCCEEEECCcc
Confidence 1236777776643
No 233
>PRK05884 short chain dehydrogenase; Provisional
Probab=76.99 E-value=6.4 Score=40.29 Aligned_cols=72 Identities=14% Similarity=0.133 Sum_probs=50.4
Q ss_pred eEEEEccc-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCc---c
Q 004585 384 HILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV---S 459 (744)
Q Consensus 384 HIII~G~g-~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI---~ 459 (744)
+++|.|.+ ..|..++++|...+ ..|+++++++++++...++ .++.++.+|.++++.++++-- +
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g------~~v~~~~r~~~~~~~~~~~-------~~~~~~~~D~~~~~~v~~~~~~~~~ 68 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDG------HKVTLVGARRDDLEVAAKE-------LDVDAIVCDNTDPASLEEARGLFPH 68 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHh-------ccCcEEecCCCCHHHHHHHHHHHhh
Confidence 58899874 46899999998643 6788888888776655432 135578899999988876421 1
Q ss_pred cccEEEEec
Q 004585 460 KARAIIVLA 468 (744)
Q Consensus 460 ~A~aVIilt 468 (744)
+.|.+|-.+
T Consensus 69 ~id~lv~~a 77 (223)
T PRK05884 69 HLDTIVNVP 77 (223)
T ss_pred cCcEEEECC
Confidence 456666554
No 234
>PRK07806 short chain dehydrogenase; Provisional
Probab=76.86 E-value=8.9 Score=39.35 Aligned_cols=78 Identities=13% Similarity=0.112 Sum_probs=51.2
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCC--CCceEEEEEcCcCCHhhHhcC-
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGL--MNIKLVHREGNAVIRRHLESL- 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L--~n~~V~~i~GD~td~~~L~e~- 717 (744)
.++++|.|+ |.+|..+++.|.+ .|.+|.++..... ++.+.+.+ .+ ....+..+.+|.+|.+.+++.
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~---~G~~V~~~~r~~~-~~~~~~~~------~l~~~~~~~~~~~~D~~~~~~~~~~~ 75 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAG---AGAHVVVNYRQKA-PRANKVVA------EIEAAGGRASAVGADLTDEESVAALM 75 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHH---CCCEEEEEeCCch-HhHHHHHH------HHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 368999998 7899999999975 4889988765422 23333221 11 012345689999999877532
Q ss_pred -----CCCCcceEEEec
Q 004585 718 -----PLETFDSMSHWK 729 (744)
Q Consensus 718 -----~I~~~DavIilT 729 (744)
.....|.+|..+
T Consensus 76 ~~~~~~~~~~d~vi~~a 92 (248)
T PRK07806 76 DTAREEFGGLDALVLNA 92 (248)
T ss_pred HHHHHhCCCCcEEEECC
Confidence 224678877665
No 235
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=76.83 E-value=4.9 Score=42.48 Aligned_cols=91 Identities=14% Similarity=0.052 Sum_probs=51.3
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcC-CCCcCCCCCceEEEEEcCcCCHhhHhcCCC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDG-GLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~-g~~~~~L~n~~V~~i~GD~td~~~L~e~~I 719 (744)
.+++|||+|+|.-+ +++++.++ .+-.+|+++|-+| +-.+...+. +.....+.+-.+.++++|+. ..|++..=
T Consensus 76 ~p~~VLiiGgG~G~--~~~ell~~-~~~~~i~~VEiD~--~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~--~~l~~~~~ 148 (246)
T PF01564_consen 76 NPKRVLIIGGGDGG--TARELLKH-PPVESITVVEIDP--EVVELARKYFPEFSEGLDDPRVRIIIGDGR--KFLKETQE 148 (246)
T ss_dssp ST-EEEEEESTTSH--HHHHHTTS-TT-SEEEEEES-H--HHHHHHHHHTHHHHTTGGSTTEEEEESTHH--HHHHTSSS
T ss_pred CcCceEEEcCCChh--hhhhhhhc-CCcceEEEEecCh--HHHHHHHHhchhhccccCCCceEEEEhhhH--HHHHhccC
Confidence 67899999988764 35666554 2356899999754 333322110 00001244555666889984 56666533
Q ss_pred CCcceEEEec-Cchhhhhhh
Q 004585 720 ETFDSMSHWK-TRLCILTHV 738 (744)
Q Consensus 720 ~~~DavIilT-de~ni~t~~ 738 (744)
++||.||+=. |..+.-..+
T Consensus 149 ~~yDvIi~D~~dp~~~~~~l 168 (246)
T PF01564_consen 149 EKYDVIIVDLTDPDGPAPNL 168 (246)
T ss_dssp T-EEEEEEESSSTTSCGGGG
T ss_pred CcccEEEEeCCCCCCCcccc
Confidence 3999999866 544433333
No 236
>PRK05867 short chain dehydrogenase; Provisional
Probab=76.80 E-value=9.4 Score=39.49 Aligned_cols=79 Identities=15% Similarity=0.076 Sum_probs=54.3
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC----
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (744)
..++|.|.+. .|..++++|.+.+ ..|++++++++..+...+++.. .+.++.++.+|.++++.++++-
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G------~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAG------AQVAIAARHLDALEKLADEIGT--SGGKVVPVCCDVSQHQQVTSMLDQVT 81 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC------CEEEEEcCCHHHHHHHHHHHHh--cCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 4688889754 6899999998653 5788889888777665543311 1345778889999988876641
Q ss_pred --cccccEEEEecC
Q 004585 458 --VSKARAIIVLAS 469 (744)
Q Consensus 458 --I~~A~aVIiltd 469 (744)
...-|.+|-.+.
T Consensus 82 ~~~g~id~lv~~ag 95 (253)
T PRK05867 82 AELGGIDIAVCNAG 95 (253)
T ss_pred HHhCCCCEEEECCC
Confidence 124577776554
No 237
>PRK08339 short chain dehydrogenase; Provisional
Probab=76.72 E-value=9.2 Score=40.13 Aligned_cols=80 Identities=15% Similarity=0.071 Sum_probs=53.3
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCc---
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI--- 458 (744)
..++|.|.+. .|..++++|.+.+ ..|++++++++..+...+++.. ..+.++.++.+|.++++.++++--
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G------~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAG------ADVILLSRNEENLKKAREKIKS-ESNVDVSYIVADLTKREDLERTVKELK 81 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh-hcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 3678888765 6999999998754 5788889888776655443211 113467889999999988766411
Q ss_pred --ccccEEEEecC
Q 004585 459 --SKARAIIVLAS 469 (744)
Q Consensus 459 --~~A~aVIiltd 469 (744)
..-|.+|..+.
T Consensus 82 ~~g~iD~lv~nag 94 (263)
T PRK08339 82 NIGEPDIFFFSTG 94 (263)
T ss_pred hhCCCcEEEECCC
Confidence 23456665543
No 238
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=76.70 E-value=4.6 Score=45.46 Aligned_cols=80 Identities=15% Similarity=0.082 Sum_probs=52.2
Q ss_pred cCeEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHH--HHhhhcccCCCcEEEEEeCCCCHHHHhccCc
Q 004585 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMD--IAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (744)
Q Consensus 382 k~HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~--l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI 458 (744)
...|+|.|. |..|..++++|...+ +.|+++.+++...+.. ..+.. ....++.++.||.+|++.++++--
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~G------~~V~~l~R~~~~~~~~~~~~~~~--~~~~~v~~v~~Dl~d~~~l~~~~~ 131 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRRG------YNVVAVAREKSGIRGKNGKEDTK--KELPGAEVVFGDVTDADSLRKVLF 131 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC------CEEEEEEechhhccccchhhHHh--hhcCCceEEEeeCCCHHHHHHHHH
Confidence 347899987 557999999998643 5677777765432110 00000 012357899999999999987632
Q ss_pred c---cccEEEEecC
Q 004585 459 S---KARAIIVLAS 469 (744)
Q Consensus 459 ~---~A~aVIiltd 469 (744)
+ .+|.||.+..
T Consensus 132 ~~~~~~D~Vi~~aa 145 (390)
T PLN02657 132 SEGDPVDVVVSCLA 145 (390)
T ss_pred HhCCCCcEEEECCc
Confidence 2 5888886543
No 239
>PRK06181 short chain dehydrogenase; Provisional
Probab=76.52 E-value=8.9 Score=39.81 Aligned_cols=79 Identities=18% Similarity=0.149 Sum_probs=53.9
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhcc-----
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA----- 456 (744)
+.++|.|++. .|..++++|...+ ..|++++++++..+...+++.. .+.++.++.+|.++++.++++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g------~~Vi~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~ 73 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAG------AQLVLAARNETRLASLAQELAD--HGGEALVVPTDVSDAEACERLIEAAV 73 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 4689999844 6889999997543 5788888887766655443211 134677889999998887654
Q ss_pred -CcccccEEEEecC
Q 004585 457 -SVSKARAIIVLAS 469 (744)
Q Consensus 457 -gI~~A~aVIiltd 469 (744)
.....|.+|-.+.
T Consensus 74 ~~~~~id~vi~~ag 87 (263)
T PRK06181 74 ARFGGIDILVNNAG 87 (263)
T ss_pred HHcCCCCEEEECCC
Confidence 1125677777664
No 240
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=76.52 E-value=9.4 Score=38.96 Aligned_cols=81 Identities=15% Similarity=0.071 Sum_probs=55.1
Q ss_pred cCeEEEEccc-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC--c
Q 004585 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--V 458 (744)
Q Consensus 382 k~HIII~G~g-~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--I 458 (744)
.+.++|.|.+ ..|..++++|.+.+ ..|+++.++++..+.....+.. .+.++.++.+|..+++.++++- +
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g------~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADG------AEVIVVDICGDDAAATAELVEA--AGGKARARQVDVRDRAALKAAVAAG 77 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHH
Confidence 3478899864 46899999998653 5688888886655544333211 1335888999999999887752 1
Q ss_pred ----ccccEEEEecCC
Q 004585 459 ----SKARAIIVLASD 470 (744)
Q Consensus 459 ----~~A~aVIiltdd 470 (744)
...+.+|-++..
T Consensus 78 ~~~~~~~d~vi~~ag~ 93 (251)
T PRK12826 78 VEDFGRLDILVANAGI 93 (251)
T ss_pred HHHhCCCCEEEECCCC
Confidence 257888877644
No 241
>PRK08219 short chain dehydrogenase; Provisional
Probab=76.45 E-value=8.9 Score=38.57 Aligned_cols=75 Identities=15% Similarity=0.059 Sum_probs=52.7
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC--cc
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--VS 459 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--I~ 459 (744)
++++|.|.+. .|..++++|... +.|++++++++..+.+... ..++.++.+|.++++.++++- +.
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~-------~~V~~~~r~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~ 70 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT-------HTLLLGGRPAERLDELAAE------LPGATPFPVDLTDPEAIAAAVEQLG 70 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh-------CCEEEEeCCHHHHHHHHHH------hccceEEecCCCCHHHHHHHHHhcC
Confidence 4789988754 688999999754 3577778877665544322 124778999999999988742 23
Q ss_pred cccEEEEecCC
Q 004585 460 KARAIIVLASD 470 (744)
Q Consensus 460 ~A~aVIiltdd 470 (744)
+.+.+|-+...
T Consensus 71 ~id~vi~~ag~ 81 (227)
T PRK08219 71 RLDVLVHNAGV 81 (227)
T ss_pred CCCEEEECCCc
Confidence 57888877653
No 242
>PLN02928 oxidoreductase family protein
Probab=76.36 E-value=4.1 Score=45.31 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=29.2
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccC
Q 004585 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (744)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~ 677 (744)
.+++.|+|.|++|..+++.|..+ |.+|...+..
T Consensus 159 gktvGIiG~G~IG~~vA~~l~af---G~~V~~~dr~ 191 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPF---GVKLLATRRS 191 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhC---CCEEEEECCC
Confidence 46899999999999999999875 8999998864
No 243
>PRK05650 short chain dehydrogenase; Provisional
Probab=76.04 E-value=9.8 Score=39.84 Aligned_cols=79 Identities=15% Similarity=0.079 Sum_probs=54.4
Q ss_pred eEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC-----
Q 004585 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS----- 457 (744)
Q Consensus 384 HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg----- 457 (744)
+++|.|.+. .|..++++|...+ ..|++++++.+..+....++. -.+.++.++.+|.++++.++++-
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g------~~V~~~~r~~~~~~~~~~~l~--~~~~~~~~~~~D~~~~~~~~~~~~~i~~ 73 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREG------WRLALADVNEEGGEETLKLLR--EAGGDGFYQRCDVRDYSQLTALAQACEE 73 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHH--hcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 688998754 6899999998653 578888888776665544321 12446788999999988876641
Q ss_pred -cccccEEEEecCC
Q 004585 458 -VSKARAIIVLASD 470 (744)
Q Consensus 458 -I~~A~aVIiltdd 470 (744)
....|.+|-.+..
T Consensus 74 ~~~~id~lI~~ag~ 87 (270)
T PRK05650 74 KWGGIDVIVNNAGV 87 (270)
T ss_pred HcCCCCEEEECCCC
Confidence 1346777776543
No 244
>PRK05866 short chain dehydrogenase; Provisional
Probab=76.00 E-value=5.3 Score=42.88 Aligned_cols=78 Identities=9% Similarity=0.055 Sum_probs=52.8
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC----
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~---- 717 (744)
++++|.|+ |.+|..+++.|.+ .|.+|.++... .++.+.+.+. +. . .+..+..+.+|.+|++.+++.
T Consensus 41 k~vlItGasggIG~~la~~La~---~G~~Vi~~~R~--~~~l~~~~~~-l~--~-~~~~~~~~~~Dl~d~~~v~~~~~~~ 111 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFAR---RGATVVAVARR--EDLLDAVADR-IT--R-AGGDAMAVPCDLSDLDAVDALVADV 111 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHH---CCCEEEEEECC--HHHHHHHHHH-HH--h-cCCcEEEEEccCCCHHHHHHHHHHH
Confidence 68999998 7899999999976 48999998864 3444433320 00 0 122355689999998876542
Q ss_pred --CCCCcceEEEec
Q 004585 718 --PLETFDSMSHWK 729 (744)
Q Consensus 718 --~I~~~DavIilT 729 (744)
..+..|.+|-.+
T Consensus 112 ~~~~g~id~li~~A 125 (293)
T PRK05866 112 EKRIGGVDILINNA 125 (293)
T ss_pred HHHcCCCCEEEECC
Confidence 245778888765
No 245
>PRK07774 short chain dehydrogenase; Provisional
Probab=75.99 E-value=9.6 Score=39.10 Aligned_cols=80 Identities=15% Similarity=0.065 Sum_probs=53.6
Q ss_pred cCeEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC---
Q 004585 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (744)
Q Consensus 382 k~HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (744)
...++|.|. |..|..++++|...+ ..|++++++++..+...++... .+..+.++.+|.++.+.++++-
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g------~~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREG------ASVVVADINAEGAERVAKQIVA--DGGTAIAVQVDVSDPDSAKAMADAT 77 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 357999998 557999999998754 5788888887655544332211 1224667889999998765531
Q ss_pred ---cccccEEEEecC
Q 004585 458 ---VSKARAIIVLAS 469 (744)
Q Consensus 458 ---I~~A~aVIiltd 469 (744)
....|.+|-.+.
T Consensus 78 ~~~~~~id~vi~~ag 92 (250)
T PRK07774 78 VSAFGGIDYLVNNAA 92 (250)
T ss_pred HHHhCCCCEEEECCC
Confidence 124678887664
No 246
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=75.98 E-value=3.8 Score=47.03 Aligned_cols=35 Identities=14% Similarity=0.019 Sum_probs=30.5
Q ss_pred CCCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccC
Q 004585 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (744)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~ 677 (744)
...++|+|+|+|..|...+..|.+. |.+|++++..
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~---g~~V~lie~~ 172 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARK---GYDVTIFEAR 172 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC---CCeEEEEccC
Confidence 4567999999999999999999764 8999999965
No 247
>PRK07825 short chain dehydrogenase; Provisional
Probab=75.96 E-value=8.3 Score=40.40 Aligned_cols=75 Identities=15% Similarity=0.046 Sum_probs=51.9
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC----
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (744)
..++|.|.+. .|..++++|...+ ..|++++++++.+++..... ..+.++.+|.++++.++++-
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G------~~v~~~~r~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~ 73 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALG------ARVAIGDLDEALAKETAAEL------GLVVGGPLDVTDPASFAAFLDAVE 73 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHHh------ccceEEEccCCCHHHHHHHHHHHH
Confidence 4789999855 6889999998643 57888888887776654432 14677889999988865421
Q ss_pred --cccccEEEEecC
Q 004585 458 --VSKARAIIVLAS 469 (744)
Q Consensus 458 --I~~A~aVIiltd 469 (744)
....|.+|..+.
T Consensus 74 ~~~~~id~li~~ag 87 (273)
T PRK07825 74 ADLGPIDVLVNNAG 87 (273)
T ss_pred HHcCCCCEEEECCC
Confidence 124566666553
No 248
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.94 E-value=8.4 Score=40.36 Aligned_cols=78 Identities=12% Similarity=0.106 Sum_probs=52.3
Q ss_pred CceEEEEcc---cchHHHHHHHHHhhcCCCCEEEEEccC-CchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhc-
Q 004585 642 PEKILFCGW---RRDIDDMIMVLEAFLAPGSELWMLNEV-PEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES- 716 (744)
Q Consensus 642 ~~rILI~Gw---g~~g~~l~~~L~~~~~~gs~v~IIe~~-p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e- 716 (744)
.+.++|.|+ +.+|..+++.|.+ .|.+|.++... .++++.+.+.+ +++...+..+..|.+|++..++
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~---~G~~v~~~~r~~~~~~~~~~~~~------~~~~~~~~~~~~Dv~d~~~v~~~ 77 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHN---AGAKLVFTYAGERLEKEVRELAD------TLEGQESLLLPCDVTSDEEITAC 77 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHH---CCCEEEEecCcccchHHHHHHHH------HcCCCceEEEecCCCCHHHHHHH
Confidence 468999998 4899999999986 48899888532 22344444543 2222345567899999987653
Q ss_pred -----CCCCCcceEEEe
Q 004585 717 -----LPLETFDSMSHW 728 (744)
Q Consensus 717 -----~~I~~~DavIil 728 (744)
+..+..|.+|..
T Consensus 78 ~~~~~~~~g~ld~lv~n 94 (257)
T PRK08594 78 FETIKEEVGVIHGVAHC 94 (257)
T ss_pred HHHHHHhCCCccEEEEC
Confidence 224567877643
No 249
>PRK07109 short chain dehydrogenase; Provisional
Probab=75.85 E-value=9.4 Score=41.87 Aligned_cols=80 Identities=16% Similarity=0.137 Sum_probs=54.9
Q ss_pred cCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC---
Q 004585 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (744)
Q Consensus 382 k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (744)
...++|.|.+. .|..++++|.+.+ ..|+++.++++.+++..++.. -.+.++.++.+|.++++.++++-
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G------~~Vvl~~R~~~~l~~~~~~l~--~~g~~~~~v~~Dv~d~~~v~~~~~~~ 79 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRG------AKVVLLARGEEGLEALAAEIR--AAGGEALAVVADVADAEAVQAAADRA 79 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHHHH--HcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 35788888755 6889999998653 578888888877666544321 12346788999999999887651
Q ss_pred ---cccccEEEEecC
Q 004585 458 ---VSKARAIIVLAS 469 (744)
Q Consensus 458 ---I~~A~aVIiltd 469 (744)
...-|.+|-.+.
T Consensus 80 ~~~~g~iD~lInnAg 94 (334)
T PRK07109 80 EEELGPIDTWVNNAM 94 (334)
T ss_pred HHHCCCCCEEEECCC
Confidence 124566665553
No 250
>PRK10637 cysG siroheme synthase; Provisional
Probab=75.72 E-value=22 Score=40.97 Aligned_cols=86 Identities=17% Similarity=0.036 Sum_probs=55.7
Q ss_pred ecCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCccc
Q 004585 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (744)
Q Consensus 381 ~k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (744)
...+++|+|.|+++.+=++.|...+ ..+.|+...-.++++.+.. ..++.++..+.. +++| +.
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~~g-----a~v~visp~~~~~~~~l~~-------~~~i~~~~~~~~-~~dl-----~~ 72 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLDAG-----ARLTVNALAFIPQFTAWAD-------AGMLTLVEGPFD-ESLL-----DT 72 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-----CEEEEEcCCCCHHHHHHHh-------CCCEEEEeCCCC-hHHh-----CC
Confidence 3569999999999888788887654 2344443332334444332 235777776653 4555 56
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhh
Q 004585 461 ARAIIVLASDENADQSDARALRVVLSLTGV 490 (744)
Q Consensus 461 A~aVIiltdd~~~~~sD~~NI~~~Lsar~l 490 (744)
|+.||+.|+| .+.|-.+.-.++..
T Consensus 73 ~~lv~~at~d------~~~n~~i~~~a~~~ 96 (457)
T PRK10637 73 CWLAIAATDD------DAVNQRVSEAAEAR 96 (457)
T ss_pred CEEEEECCCC------HHHhHHHHHHHHHc
Confidence 8888998864 56777777777664
No 251
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=75.71 E-value=10 Score=38.39 Aligned_cols=80 Identities=18% Similarity=0.088 Sum_probs=54.8
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhcc--Cc-
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--SV- 458 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA--gI- 458 (744)
.+++|.|.+. .|..++++|.+.+ +.|+++.++++..+....... -.+.++.++.+|.++++.+.++ ++
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g------~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADG------AKVVIYDSNEEAAEALAAELR--AAGGEARVLVFDVSDEAAVRALIEAAV 77 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC------CEEEEEeCChhHHHHHHHHHH--hcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 4799999754 6899999998643 568888888776655443321 1134577888999999887664 11
Q ss_pred ---ccccEEEEecCC
Q 004585 459 ---SKARAIIVLASD 470 (744)
Q Consensus 459 ---~~A~aVIiltdd 470 (744)
...|.+|-.+..
T Consensus 78 ~~~~~id~vi~~ag~ 92 (246)
T PRK05653 78 EAFGALDILVNNAGI 92 (246)
T ss_pred HHhCCCCEEEECCCc
Confidence 234888877643
No 252
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=75.65 E-value=11 Score=39.20 Aligned_cols=81 Identities=23% Similarity=0.251 Sum_probs=55.2
Q ss_pred cCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC---
Q 004585 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (744)
Q Consensus 382 k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (744)
..+++|.|.+. .|..+++.|...+ ..|++++++.+..+.....+. ..+.++.++.+|.++++.++++-
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G------~~V~~~~r~~~~~~~~~~~i~--~~~~~~~~~~~Dl~d~~~i~~~~~~~ 83 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAG------ARVVLSARKAEELEEAAAHLE--ALGIDALWIAADVADEADIERLAEET 83 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHH--hcCCeEEEEEccCCCHHHHHHHHHHH
Confidence 35799998654 6899999998643 578888888776655443321 11335778999999998885531
Q ss_pred ---cccccEEEEecCC
Q 004585 458 ---VSKARAIIVLASD 470 (744)
Q Consensus 458 ---I~~A~aVIiltdd 470 (744)
....|.+|-++..
T Consensus 84 ~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 84 LERFGHVDILVNNAGA 99 (259)
T ss_pred HHHhCCCCEEEECCCC
Confidence 1346788877653
No 253
>PRK08219 short chain dehydrogenase; Provisional
Probab=75.56 E-value=9.1 Score=38.48 Aligned_cols=73 Identities=16% Similarity=0.086 Sum_probs=51.1
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC--CC
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--PL 719 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--~I 719 (744)
++++|.|+ |.+|..+++.|.+ . .+|.++... .+..+.+.+ .++++ ..+++|.+|++.++++ .+
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~---~-~~V~~~~r~--~~~~~~~~~------~~~~~--~~~~~D~~~~~~~~~~~~~~ 69 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAP---T-HTLLLGGRP--AERLDELAA------ELPGA--TPFPVDLTDPEAIAAAVEQL 69 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHh---h-CCEEEEeCC--HHHHHHHHH------Hhccc--eEEecCCCCHHHHHHHHHhc
Confidence 57999997 6789999999975 3 678888864 344444432 22333 3588999999988762 23
Q ss_pred CCcceEEEec
Q 004585 720 ETFDSMSHWK 729 (744)
Q Consensus 720 ~~~DavIilT 729 (744)
+..|.+|-..
T Consensus 70 ~~id~vi~~a 79 (227)
T PRK08219 70 GRLDVLVHNA 79 (227)
T ss_pred CCCCEEEECC
Confidence 4689988776
No 254
>PRK06138 short chain dehydrogenase; Provisional
Probab=75.46 E-value=10 Score=38.84 Aligned_cols=78 Identities=10% Similarity=0.130 Sum_probs=53.3
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--- 717 (744)
.++++|.|+ |.+|..+++.|.+ .|.+|.++...+ +..+...+. + . .+..+..+.+|.+|.+.+++.
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~---~G~~v~~~~r~~--~~~~~~~~~-~---~-~~~~~~~~~~D~~~~~~~~~~~~~ 74 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAR---EGARVVVADRDA--EAAERVAAA-I---A-AGGRAFARQGDVGSAEAVEALVDF 74 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHH---CCCeEEEecCCH--HHHHHHHHH-H---h-cCCeEEEEEcCCCCHHHHHHHHHH
Confidence 458999998 6889999999976 488999988643 333333220 0 1 123456689999999887652
Q ss_pred ---CCCCcceEEEec
Q 004585 718 ---PLETFDSMSHWK 729 (744)
Q Consensus 718 ---~I~~~DavIilT 729 (744)
.....|.+|-.+
T Consensus 75 i~~~~~~id~vi~~a 89 (252)
T PRK06138 75 VAARWGRLDVLVNNA 89 (252)
T ss_pred HHHHcCCCCEEEECC
Confidence 234678888766
No 255
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=75.26 E-value=3 Score=41.36 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=41.6
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCC
Q 004585 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (744)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~~ 721 (744)
.++|.|+|||.-|...+.-|.+. |.+|.+-.......+.+.-++ |+ ++ ....|+ +..
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDS---G~~V~Vglr~~s~s~~~A~~~-Gf--------~v----------~~~~eA-v~~ 60 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDS---GVNVIVGLREGSASWEKAKAD-GF--------EV----------MSVAEA-VKK 60 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHC---C-EEEEEE-TTCHHHHHHHHT-T---------EC----------CEHHHH-HHC
T ss_pred CCEEEEECCChHHHHHHHHHHhC---CCCEEEEecCCCcCHHHHHHC-CC--------ee----------ccHHHH-Hhh
Confidence 47899999999999999999874 899998887544345444444 32 11 122222 566
Q ss_pred cceEEEec-Cc
Q 004585 722 FDSMSHWK-TR 731 (744)
Q Consensus 722 ~DavIilT-de 731 (744)
+|.|++|+ |+
T Consensus 61 aDvV~~L~PD~ 71 (165)
T PF07991_consen 61 ADVVMLLLPDE 71 (165)
T ss_dssp -SEEEE-S-HH
T ss_pred CCEEEEeCChH
Confidence 88888888 54
No 256
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=75.05 E-value=24 Score=40.22 Aligned_cols=75 Identities=19% Similarity=0.166 Sum_probs=52.6
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCcccc
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (744)
.+++|.|++. .|..++++|...+ ..|+++++++++.+..... ...++.++.+|.++++.+.+. .++.
T Consensus 179 K~VLITGASgGIG~aLA~~La~~G------~~Vi~l~r~~~~l~~~~~~-----~~~~v~~v~~Dvsd~~~v~~~-l~~I 246 (406)
T PRK07424 179 KTVAVTGASGTLGQALLKELHQQG------AKVVALTSNSDKITLEING-----EDLPVKTLHWQVGQEAALAEL-LEKV 246 (406)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHhh-----cCCCeEEEEeeCCCHHHHHHH-hCCC
Confidence 4788998855 6899999998643 5777788776655433221 122466788999999988764 4578
Q ss_pred cEEEEecC
Q 004585 462 RAIIVLAS 469 (744)
Q Consensus 462 ~aVIiltd 469 (744)
|.+|..+.
T Consensus 247 DiLInnAG 254 (406)
T PRK07424 247 DILIINHG 254 (406)
T ss_pred CEEEECCC
Confidence 88887654
No 257
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.98 E-value=8.2 Score=39.13 Aligned_cols=79 Identities=13% Similarity=0.143 Sum_probs=50.9
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC----
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~---- 717 (744)
++|+|.|+ |.+|..+++.|.+. |.++.++.... .++.+.+.+. + ...+..+..+.+|.+|.+.+++.
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~~---g~~v~~~~~~~-~~~~~~~~~~-~---~~~~~~~~~~~~D~~~~~~v~~~~~~~ 78 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLARA---GADVVVHYRSD-EEAAEELVEA-V---EALGRRAQAVQADVTDKAALEAAVAAA 78 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC---CCeEEEEeCCC-HHHHHHHHHH-H---HhcCCceEEEECCcCCHHHHHHHHHHH
Confidence 58999998 77899999999763 88887755432 2333332210 0 01123355689999999977652
Q ss_pred --CCCCcceEEEec
Q 004585 718 --PLETFDSMSHWK 729 (744)
Q Consensus 718 --~I~~~DavIilT 729 (744)
..+..|.+|.++
T Consensus 79 ~~~~~~id~vi~~a 92 (249)
T PRK12825 79 VERFGRIDILVNNA 92 (249)
T ss_pred HHHcCCCCEEEECC
Confidence 124679988765
No 258
>PRK06180 short chain dehydrogenase; Provisional
Probab=74.94 E-value=9.6 Score=40.19 Aligned_cols=77 Identities=17% Similarity=-0.002 Sum_probs=53.8
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC----
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (744)
+.++|.|.+. .|..++++|...+ +.|++++++++..+.+... .+.++.++.+|.++++.+.++-
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G------~~V~~~~r~~~~~~~l~~~-----~~~~~~~~~~D~~d~~~~~~~~~~~~ 73 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAG------HRVVGTVRSEAARADFEAL-----HPDRALARLLDVTDFDAIDAVVADAE 73 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCc------CEEEEEeCCHHHHHHHHhh-----cCCCeeEEEccCCCHHHHHHHHHHHH
Confidence 4689999755 6899999998643 6788889888776654332 1235778899999998876541
Q ss_pred --cccccEEEEecCC
Q 004585 458 --VSKARAIIVLASD 470 (744)
Q Consensus 458 --I~~A~aVIiltdd 470 (744)
....+.+|-++..
T Consensus 74 ~~~~~~d~vv~~ag~ 88 (277)
T PRK06180 74 ATFGPIDVLVNNAGY 88 (277)
T ss_pred HHhCCCCEEEECCCc
Confidence 1245777766643
No 259
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=74.88 E-value=30 Score=32.54 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=28.0
Q ss_pred cCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCCh
Q 004585 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (744)
Q Consensus 382 k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~ 421 (744)
+.+|+|+|.|..|..+++.|...+- ..+.++|.|.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv-----~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV-----GKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT-----SEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC-----CceeecCCcc
Confidence 3589999999999999999998753 3677777764
No 260
>PRK06139 short chain dehydrogenase; Provisional
Probab=74.88 E-value=9.6 Score=41.87 Aligned_cols=80 Identities=16% Similarity=0.149 Sum_probs=56.1
Q ss_pred cCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC---
Q 004585 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (744)
Q Consensus 382 k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (744)
..+++|.|.+. .|..++++|...+ ..|+++.++++.+++..++... .+.++.++..|.++++.++++-
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G------~~Vvl~~R~~~~l~~~~~~~~~--~g~~~~~~~~Dv~d~~~v~~~~~~~ 78 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRG------ARLVLAARDEEALQAVAEECRA--LGAEVLVVPTDVTDADQVKALATQA 78 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHHHHh--cCCcEEEEEeeCCCHHHHHHHHHHH
Confidence 35889999855 6889999998653 5788889988777665543211 1346778889999988877642
Q ss_pred ---cccccEEEEecC
Q 004585 458 ---VSKARAIIVLAS 469 (744)
Q Consensus 458 ---I~~A~aVIiltd 469 (744)
....|.+|-.+.
T Consensus 79 ~~~~g~iD~lVnnAG 93 (330)
T PRK06139 79 ASFGGRIDVWVNNVG 93 (330)
T ss_pred HHhcCCCCEEEECCC
Confidence 134577777664
No 261
>PRK06172 short chain dehydrogenase; Provisional
Probab=74.85 E-value=5.7 Score=40.98 Aligned_cols=79 Identities=6% Similarity=-0.007 Sum_probs=51.8
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--- 717 (744)
.++++|.|+ |.+|..++++|.+ .|.+|.++...+ ++.+.+.+. + .+. +..+..+.+|.+|.+.+++.
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~---~G~~v~~~~r~~--~~~~~~~~~-~--~~~-~~~~~~~~~D~~~~~~i~~~~~~ 77 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAR---EGAKVVVADRDA--AGGEETVAL-I--REA-GGEALFVACDVTRDAEVKALVEQ 77 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---cCCEEEEEeCCH--HHHHHHHHH-H--Hhc-CCceEEEEcCCCCHHHHHHHHHH
Confidence 468999998 5789999999976 488999998753 333222210 0 011 22355689999999877652
Q ss_pred ---CCCCcceEEEec
Q 004585 718 ---PLETFDSMSHWK 729 (744)
Q Consensus 718 ---~I~~~DavIilT 729 (744)
.....|.+|...
T Consensus 78 ~~~~~g~id~li~~a 92 (253)
T PRK06172 78 TIAAYGRLDYAFNNA 92 (253)
T ss_pred HHHHhCCCCEEEECC
Confidence 123568887655
No 262
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=74.85 E-value=10 Score=39.46 Aligned_cols=76 Identities=17% Similarity=0.210 Sum_probs=51.7
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC----
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (744)
..++|.|.+. .|..++++|.+.+ ..|++++++.+.++++.+. .+.++.++.+|.++.+.++++-
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G------~~V~~~~r~~~~~~~l~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~ 74 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEG------ARVAVLDKSAAGLQELEAA-----HGDAVVGVEGDVRSLDDHKEAVARCV 74 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHhh-----cCCceEEEEeccCCHHHHHHHHHHHH
Confidence 4778888765 6899999998653 6788888887766654332 1335778889999887665531
Q ss_pred --cccccEEEEecC
Q 004585 458 --VSKARAIIVLAS 469 (744)
Q Consensus 458 --I~~A~aVIiltd 469 (744)
..+-|.+|-.+.
T Consensus 75 ~~~g~id~li~~Ag 88 (262)
T TIGR03325 75 AAFGKIDCLIPNAG 88 (262)
T ss_pred HHhCCCCEEEECCC
Confidence 124466666653
No 263
>PRK12828 short chain dehydrogenase; Provisional
Probab=74.68 E-value=9.5 Score=38.54 Aligned_cols=77 Identities=12% Similarity=0.061 Sum_probs=51.3
Q ss_pred CeEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCc---
Q 004585 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (744)
Q Consensus 383 ~HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI--- 458 (744)
..++|.|. |..|..++++|.+.+ ..|++++++++..++..++. ....+.++.+|..+.+.++++--
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G------~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARG------ARVALIGRGAAPLSQTLPGV----PADALRIGGIDLVDPQAARRAVDEVN 77 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCC------CeEEEEeCChHhHHHHHHHH----hhcCceEEEeecCCHHHHHHHHHHHH
Confidence 46888886 557899999998653 57888988876555443322 12345677899999888765421
Q ss_pred ---ccccEEEEecC
Q 004585 459 ---SKARAIIVLAS 469 (744)
Q Consensus 459 ---~~A~aVIiltd 469 (744)
...|.+|-.+.
T Consensus 78 ~~~~~~d~vi~~ag 91 (239)
T PRK12828 78 RQFGRLDALVNIAG 91 (239)
T ss_pred HHhCCcCEEEECCc
Confidence 24677776654
No 264
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=74.61 E-value=6.9 Score=37.44 Aligned_cols=79 Identities=13% Similarity=0.111 Sum_probs=53.3
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCC--CCceEEEEEcCcCCHhhHhcC--
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGL--MNIKLVHREGNAVIRRHLESL-- 717 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L--~n~~V~~i~GD~td~~~L~e~-- 717 (744)
|.++|.|+ +.+|..+++.|.+. .+..|.++...++.++.+.+.+ .+ ++..+..++.|.++++.+++.
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~--g~~~v~~~~r~~~~~~~~~l~~------~l~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARR--GARVVILTSRSEDSEGAQELIQ------ELKAPGAKITFIECDLSDPESIRALIE 72 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT--TTEEEEEEESSCHHHHHHHHHH------HHHHTTSEEEEEESETTSHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhc--CceEEEEeeecccccccccccc------ccccccccccccccccccccccccccc
Confidence 46899997 57899999999874 2456677775434566665533 12 235566789999999888752
Q ss_pred ----CCCCcceEEEec
Q 004585 718 ----PLETFDSMSHWK 729 (744)
Q Consensus 718 ----~I~~~DavIilT 729 (744)
.....|.+|..+
T Consensus 73 ~~~~~~~~ld~li~~a 88 (167)
T PF00106_consen 73 EVIKRFGPLDILINNA 88 (167)
T ss_dssp HHHHHHSSESEEEEEC
T ss_pred cccccccccccccccc
Confidence 234677777655
No 265
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=74.52 E-value=11 Score=39.23 Aligned_cols=71 Identities=24% Similarity=0.205 Sum_probs=46.9
Q ss_pred eEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhcc
Q 004585 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (744)
Q Consensus 384 HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA 456 (744)
.++|.|.+. .|..++++|..... ..+..|+++.++++.++...+++.....+.++.++.+|.++++.++++
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~--~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~ 73 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLK--SPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQL 73 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhc--cCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHH
Confidence 478888876 58889999975210 123678888888877776654432111234677888999998876653
No 266
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=74.52 E-value=6.3 Score=41.17 Aligned_cols=108 Identities=17% Similarity=0.228 Sum_probs=60.1
Q ss_pred ecCeEEEEcccccHHHHHHHHHHhcccCCCCeEEE-EEcC----------ChHHHHHHHHhhhcccCCCcEE-EEEeCCC
Q 004585 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVV-LAER----------DKEEMEMDIAKLEFDFMGTSVI-CRSGSPL 448 (744)
Q Consensus 381 ~k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVV-Lid~----------d~e~le~~l~~~~~~~~~~~V~-~i~Gd~t 448 (744)
...+++|.|+|.+|..+++.|.+.+ ..|+ +.|. |.+++.+..++. + .+. +-.+...
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~g------~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~-----g-~l~~~~~~~~~ 97 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEAG------AKVVAVSDSDGTIYNPDGLDVPALLAYKKEH-----G-SVLGFPGAERI 97 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCC------CEEEEEECCCCeEECCCCCCHHHHHHHHHhc-----C-CcccCCCceec
Confidence 4569999999999999999998753 4455 8888 766655543321 1 010 0001112
Q ss_pred CHHHHhccCcccccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCccEEEEecCC----CCHHHHHHcCC
Q 004585 449 ILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDL----DNEPLVKLVGG 516 (744)
Q Consensus 449 ~~e~L~rAgI~~A~aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d~----e~~~~lk~~Ga 516 (744)
..+.+... +||.+|=++... .-+.+|+ .++ ++++|++.-|. +..+.|+.-|+
T Consensus 98 ~~~~i~~~---~~Dvlip~a~~~---~i~~~~~------~~l----~a~~I~egAN~~~t~~a~~~L~~rGi 153 (227)
T cd01076 98 TNEELLEL---DCDILIPAALEN---QITADNA------DRI----KAKIIVEAANGPTTPEADEILHERGV 153 (227)
T ss_pred CCccceee---cccEEEecCccC---ccCHHHH------hhc----eeeEEEeCCCCCCCHHHHHHHHHCCC
Confidence 22223322 678888777421 1223332 222 25688876553 33455666664
No 267
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.41 E-value=29 Score=37.74 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=43.5
Q ss_pred ecCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhc
Q 004585 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (744)
Q Consensus 381 ~k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~r 455 (744)
...-++|.|.|. .|..++.|+...+ ..+++.|.+++..++..++... .+ .+....-|-++.+.+.+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg------~~~vl~Din~~~~~etv~~~~~--~g-~~~~y~cdis~~eei~~ 103 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRG------AKLVLWDINKQGNEETVKEIRK--IG-EAKAYTCDISDREEIYR 103 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhC------CeEEEEeccccchHHHHHHHHh--cC-ceeEEEecCCCHHHHHH
Confidence 456788888887 5888999998643 5788888887665554433210 02 46666777777776554
No 268
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=74.33 E-value=23 Score=38.77 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=46.4
Q ss_pred eEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhc--ccCC-CcEEEEEeCCCCHHHHhccCccc
Q 004585 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF--DFMG-TSVICRSGSPLILADLKKVSVSK 460 (744)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~--~~~~-~~V~~i~Gd~t~~e~L~rAgI~~ 460 (744)
+|.|+|.|.+|..++-.|...+ -...++|+|.+++..+....++.+ .+.. .++.+..| +.++ +.+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~----~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~---~y~~-----~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALG----LFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAG---DYDD-----CAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcC----CCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEEC---CHHH-----hCC
Confidence 4789999999999988887543 235789999876544433322211 1221 23433333 3343 457
Q ss_pred ccEEEEecCC
Q 004585 461 ARAIIVLASD 470 (744)
Q Consensus 461 A~aVIiltdd 470 (744)
||.||+.+..
T Consensus 69 aDivvitaG~ 78 (307)
T cd05290 69 ADIIVITAGP 78 (307)
T ss_pred CCEEEECCCC
Confidence 8889998876
No 269
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=74.31 E-value=26 Score=39.52 Aligned_cols=36 Identities=11% Similarity=0.113 Sum_probs=25.8
Q ss_pred HHHHhhhhhhccCCCHHHHHHHHHHhhhcCCCCCCC
Q 004585 299 IIFGGLALYAVSDSSFAEALWLSWTFVADSGNHADR 334 (744)
Q Consensus 299 il~g~l~~~~ie~~s~~dA~y~~~~tltTvGygd~~ 334 (744)
.+++++.|+..+..+++||++.++.+++|.|+.-.+
T Consensus 114 t~l~~~~~~~~g~~~~~~Aif~avSa~~taGFs~~~ 149 (390)
T TIGR00933 114 TILLAVRFVLTGWMPLFDAIFHSISAFNNGGFSTHS 149 (390)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhcCCcCCCC
Confidence 334444444332289999999999999999996553
No 270
>PRK06101 short chain dehydrogenase; Provisional
Probab=74.30 E-value=8.1 Score=39.75 Aligned_cols=61 Identities=8% Similarity=0.003 Sum_probs=45.1
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhc
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES 716 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e 716 (744)
+.++|.|+ |.+|..++++|.+ .|.+|.++..+ +++.+.+.+ ...+ +..+.+|.+|++.+++
T Consensus 2 ~~vlItGas~giG~~la~~L~~---~G~~V~~~~r~--~~~~~~~~~------~~~~--~~~~~~D~~~~~~~~~ 63 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAK---QGWQVIACGRN--QSVLDELHT------QSAN--IFTLAFDVTDHPGTKA 63 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHh---CCCEEEEEECC--HHHHHHHHH------hcCC--CeEEEeeCCCHHHHHH
Confidence 46899997 6789999999976 48999998864 456565554 1223 3357899999998766
No 271
>PRK07454 short chain dehydrogenase; Provisional
Probab=74.26 E-value=6.3 Score=40.36 Aligned_cols=79 Identities=10% Similarity=0.040 Sum_probs=51.8
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--- 717 (744)
.++++|.|+ |.+|..++++|.+ .|..|.+++.++ +..+.+.+. + ... ...+..+.+|.+|.+.++++
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~---~G~~V~~~~r~~--~~~~~~~~~-~--~~~-~~~~~~~~~D~~~~~~~~~~~~~ 76 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAK---AGWDLALVARSQ--DALEALAAE-L--RST-GVKAAAYSIDLSNPEAIAPGIAE 76 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHH-H--HhC-CCcEEEEEccCCCHHHHHHHHHH
Confidence 368999998 7799999999976 488999998653 333333220 0 011 12355688999999876543
Q ss_pred ---CCCCcceEEEec
Q 004585 718 ---PLETFDSMSHWK 729 (744)
Q Consensus 718 ---~I~~~DavIilT 729 (744)
.....|.+|..+
T Consensus 77 ~~~~~~~id~lv~~a 91 (241)
T PRK07454 77 LLEQFGCPDVLINNA 91 (241)
T ss_pred HHHHcCCCCEEEECC
Confidence 123578888655
No 272
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=74.19 E-value=6.4 Score=42.20 Aligned_cols=70 Identities=16% Similarity=0.104 Sum_probs=45.3
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCC
Q 004585 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (744)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~~ 721 (744)
..||-|+|.|++|..+++.|.+. .++.++..+-. ++.++++.+++ ++.... -..+.+.|. .+
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~-~~~~el~aV~d-r~~~~a~~~a~------~~g~~~------~~~~~eell----~~ 67 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRG-LPGLTLSAVAV-RDPQRHADFIW------GLRRPP------PVVPLDQLA----TH 67 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhc-CCCeEEEEEEC-CCHHHHHHHHH------hcCCCc------ccCCHHHHh----cC
Confidence 35899999999999999999752 25777775543 35677777765 111111 113444442 34
Q ss_pred cceEEEec
Q 004585 722 FDSMSHWK 729 (744)
Q Consensus 722 ~DavIilT 729 (744)
.|.|++.+
T Consensus 68 ~D~Vvi~t 75 (271)
T PRK13302 68 ADIVVEAA 75 (271)
T ss_pred CCEEEECC
Confidence 68888887
No 273
>PRK09072 short chain dehydrogenase; Provisional
Probab=74.17 E-value=12 Score=39.06 Aligned_cols=80 Identities=21% Similarity=0.142 Sum_probs=55.5
Q ss_pred cCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC---
Q 004585 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (744)
Q Consensus 382 k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (744)
...++|.|.+. .|..++++|.+.+ ..|++++++++..+....+.. .+.++.++.+|.++++.++++-
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G------~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~d~~~~~~~~~~~ 75 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAG------ARLLLVGRNAEKLEALAARLP---YPGRHRWVVADLTSEAGREAVLARA 75 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHHH
Confidence 34688998754 6899999998643 678888888877666544321 1336788899999988766531
Q ss_pred --cccccEEEEecCC
Q 004585 458 --VSKARAIIVLASD 470 (744)
Q Consensus 458 --I~~A~aVIiltdd 470 (744)
....|.+|..+..
T Consensus 76 ~~~~~id~lv~~ag~ 90 (263)
T PRK09072 76 REMGGINVLINNAGV 90 (263)
T ss_pred HhcCCCCEEEECCCC
Confidence 2356778777643
No 274
>PRK07890 short chain dehydrogenase; Provisional
Probab=74.10 E-value=9.9 Score=39.19 Aligned_cols=77 Identities=8% Similarity=0.091 Sum_probs=53.2
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCC--CceEEEEEcCcCCHhhHhcC-
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM--NIKLVHREGNAVIRRHLESL- 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~--n~~V~~i~GD~td~~~L~e~- 717 (744)
.++++|.|+ |.+|..+++.|.+ .|.+|.+++..+ +..+.+.+ .++ ...+..+..|.+|++.++++
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~---~G~~V~~~~r~~--~~~~~~~~------~~~~~~~~~~~~~~D~~~~~~~~~~~ 73 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAAR---AGADVVLAARTA--ERLDEVAA------EIDDLGRRALAVPTDITDEDQCANLV 73 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHH---cCCEEEEEeCCH--HHHHHHHH------HHHHhCCceEEEecCCCCHHHHHHHH
Confidence 468999998 6789999999976 488999998643 33333332 111 22345689999999887541
Q ss_pred -----CCCCcceEEEec
Q 004585 718 -----PLETFDSMSHWK 729 (744)
Q Consensus 718 -----~I~~~DavIilT 729 (744)
..+..|.+|..+
T Consensus 74 ~~~~~~~g~~d~vi~~a 90 (258)
T PRK07890 74 ALALERFGRVDALVNNA 90 (258)
T ss_pred HHHHHHcCCccEEEECC
Confidence 235678888776
No 275
>PRK06914 short chain dehydrogenase; Provisional
Probab=74.03 E-value=5.8 Score=41.69 Aligned_cols=80 Identities=10% Similarity=0.037 Sum_probs=52.1
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhc-----
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES----- 716 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e----- 716 (744)
+.++|.|+ |.+|..+++.|.+ .|..|.++...+ +.++.+.+.- ..... +..+..+.+|.+|++.+++
T Consensus 4 k~~lItGasg~iG~~la~~l~~---~G~~V~~~~r~~--~~~~~~~~~~-~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~ 76 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAK---KGYLVIATMRNP--EKQENLLSQA-TQLNL-QQNIKVQQLDVTDQNSIHNFQLVL 76 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHh---CCCEEEEEeCCH--HHHHHHHHHH-HhcCC-CCceeEEecCCCCHHHHHHHHHHH
Confidence 57899997 6889999999975 489999987643 3333332200 00001 2345568999999988764
Q ss_pred CCCCCcceEEEec
Q 004585 717 LPLETFDSMSHWK 729 (744)
Q Consensus 717 ~~I~~~DavIilT 729 (744)
...+..|.+|..+
T Consensus 77 ~~~~~id~vv~~a 89 (280)
T PRK06914 77 KEIGRIDLLVNNA 89 (280)
T ss_pred HhcCCeeEEEECC
Confidence 1234568888776
No 276
>PRK07478 short chain dehydrogenase; Provisional
Probab=74.02 E-value=12 Score=38.62 Aligned_cols=79 Identities=19% Similarity=0.125 Sum_probs=54.1
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC----
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (744)
..++|.|.+. .|..++++|...+ ..|+++.++++..+.+.+++.. .+.++.++.+|.++++.++++-
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G------~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREG------AKVVVGARRQAELDQLVAEIRA--EGGEAVALAGDVRDEAYAKALVALAV 78 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 4688888765 6899999998653 5688888888776665543311 1345778889999988776541
Q ss_pred --cccccEEEEecC
Q 004585 458 --VSKARAIIVLAS 469 (744)
Q Consensus 458 --I~~A~aVIiltd 469 (744)
..+-|.+|-.+.
T Consensus 79 ~~~~~id~li~~ag 92 (254)
T PRK07478 79 ERFGGLDIAFNNAG 92 (254)
T ss_pred HhcCCCCEEEECCC
Confidence 124577776664
No 277
>PRK06179 short chain dehydrogenase; Provisional
Probab=74.00 E-value=5.7 Score=41.49 Aligned_cols=72 Identities=15% Similarity=-0.013 Sum_probs=51.6
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC----
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (744)
..++|.|.+. .|..++++|...+ ..|+++.++++..+. ..++.++.+|.+|++.++++-
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~~g------~~V~~~~r~~~~~~~----------~~~~~~~~~D~~d~~~~~~~~~~~~ 68 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLARAG------YRVFGTSRNPARAAP----------IPGVELLELDVTDDASVQAAVDEVI 68 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCC------CEEEEEeCChhhccc----------cCCCeeEEeecCCHHHHHHHHHHHH
Confidence 4788998755 6889999998643 678888888755332 135778999999999887752
Q ss_pred --cccccEEEEecCC
Q 004585 458 --VSKARAIIVLASD 470 (744)
Q Consensus 458 --I~~A~aVIiltdd 470 (744)
....|.+|..+.-
T Consensus 69 ~~~g~~d~li~~ag~ 83 (270)
T PRK06179 69 ARAGRIDVLVNNAGV 83 (270)
T ss_pred HhCCCCCEEEECCCC
Confidence 1245788877754
No 278
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.00 E-value=12 Score=38.30 Aligned_cols=80 Identities=19% Similarity=0.187 Sum_probs=53.6
Q ss_pred cCeEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhcc----
Q 004585 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (744)
Q Consensus 382 k~HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA---- 456 (744)
...++|.|. |..|..+++.|.+.+ ..|++++++++.++...++... .+.++.++.+|.++.+.++++
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G------~~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKG------AKLALIDLNQEKLEEAVAECGA--LGTEVRGYAANVTDEEDVEATFAQI 76 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHH
Confidence 357899998 667999999998643 5688889888766655443211 134577888999888776542
Q ss_pred --CcccccEEEEecC
Q 004585 457 --SVSKARAIIVLAS 469 (744)
Q Consensus 457 --gI~~A~aVIiltd 469 (744)
.....|.+|-.+.
T Consensus 77 ~~~~~~id~vi~~ag 91 (253)
T PRK08217 77 AEDFGQLNGLINNAG 91 (253)
T ss_pred HHHcCCCCEEEECCC
Confidence 1134577777654
No 279
>PRK05717 oxidoreductase; Validated
Probab=73.93 E-value=13 Score=38.37 Aligned_cols=77 Identities=18% Similarity=0.072 Sum_probs=52.3
Q ss_pred cCeEEEEccc-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhcc--C-
Q 004585 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--S- 457 (744)
Q Consensus 382 k~HIII~G~g-~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA--g- 457 (744)
.+.++|.|.+ ..|..++++|.+.+ ..|++++.+++..+...++. +.++.++.+|.++.+.++++ .
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g------~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEG------WQVVLADLDRERGSKVAKAL-----GENAWFIAMDVADEAQVAAGVAEV 78 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcC------CEEEEEcCCHHHHHHHHHHc-----CCceEEEEccCCCHHHHHHHHHHH
Confidence 3568888875 46999999998653 57888887766555443321 23577889999998877553 1
Q ss_pred ---cccccEEEEecC
Q 004585 458 ---VSKARAIIVLAS 469 (744)
Q Consensus 458 ---I~~A~aVIiltd 469 (744)
..+.|.+|-++.
T Consensus 79 ~~~~g~id~li~~ag 93 (255)
T PRK05717 79 LGQFGRLDALVCNAA 93 (255)
T ss_pred HHHhCCCCEEEECCC
Confidence 124577777664
No 280
>PRK10750 potassium transporter; Provisional
Probab=73.93 E-value=99 Score=36.13 Aligned_cols=70 Identities=11% Similarity=0.105 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHhhhcCCCCCC------C-CCccChhhhhHHHHHH-HHHHHHHHH
Q 004585 289 LALLFATIFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHAD------R-VGTGPRIVSVSISSGG-MLIFAMMLG 359 (744)
Q Consensus 289 l~L~~~~l~lil~g~l~~~~ie~~s~~dA~y~~~~tltTvGygd~------~-~t~~gRi~~v~lil~G-i~i~a~lig 359 (744)
+..+++.+++++++++++ ..++.++.+|+--+..+++++|.+-. + -+..++++.++.|+.| +-++++++.
T Consensus 398 ~~~~~ly~~~~~~~~~~l-~~~g~~~~sA~~~v~s~l~nvG~s~G~~~~~f~~l~~~~K~il~~~MllGRLEi~tvl~~ 475 (483)
T PRK10750 398 WGFFSAYALVFIVSMLAI-IATGVDDFSAFASVVATLNNLGPGLGVVADNFTSMNPVAKWILIANMLFGRLEVFTLLVL 475 (483)
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHhcCCCCCchhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445555555 56788999999999999998887532 2 3457899888888777 556655444
No 281
>PRK08264 short chain dehydrogenase; Validated
Probab=73.85 E-value=9.9 Score=38.73 Aligned_cols=74 Identities=19% Similarity=0.139 Sum_probs=52.8
Q ss_pred cCeEEEEcc-cccHHHHHHHHHHhcccCCCCe-EEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC--
Q 004585 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGV-IVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (744)
Q Consensus 382 k~HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~-iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg-- 457 (744)
..+++|.|. |..|..++++|...+ . .|+++.++++..++ .+.++.++.+|..+.+.++++-
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G------~~~V~~~~r~~~~~~~---------~~~~~~~~~~D~~~~~~~~~~~~~ 70 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARG------AAKVYAAARDPESVTD---------LGPRVVPLQLDVTDPASVAAAAEA 70 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------cccEEEEecChhhhhh---------cCCceEEEEecCCCHHHHHHHHHh
Confidence 357899986 557999999998643 4 78888887765443 1346889999999998877642
Q ss_pred cccccEEEEecCC
Q 004585 458 VSKARAIIVLASD 470 (744)
Q Consensus 458 I~~A~aVIiltdd 470 (744)
....|++|-....
T Consensus 71 ~~~id~vi~~ag~ 83 (238)
T PRK08264 71 ASDVTILVNNAGI 83 (238)
T ss_pred cCCCCEEEECCCc
Confidence 2346777776643
No 282
>PRK07060 short chain dehydrogenase; Provisional
Probab=73.80 E-value=10 Score=38.63 Aligned_cols=74 Identities=9% Similarity=0.033 Sum_probs=52.2
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC--C
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--P 718 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--~ 718 (744)
.++++|.|+ |.+|..+++.|.+ .|.+|.++... .++.+.+.+ .+ +. .++.+|.+|++.+++. .
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~---~g~~V~~~~r~--~~~~~~~~~------~~-~~--~~~~~D~~~~~~v~~~~~~ 74 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQ---RGARVVAAARN--AAALDRLAG------ET-GC--EPLRLDVGDDAAIRAALAA 74 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHH------Hh-CC--eEEEecCCCHHHHHHHHHH
Confidence 468999998 6899999999976 48899998864 355555543 11 22 2477999998876652 2
Q ss_pred CCCcceEEEec
Q 004585 719 LETFDSMSHWK 729 (744)
Q Consensus 719 I~~~DavIilT 729 (744)
....|.+|...
T Consensus 75 ~~~~d~vi~~a 85 (245)
T PRK07060 75 AGAFDGLVNCA 85 (245)
T ss_pred hCCCCEEEECC
Confidence 34578888766
No 283
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=73.79 E-value=18 Score=36.75 Aligned_cols=78 Identities=19% Similarity=0.132 Sum_probs=54.8
Q ss_pred cCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhcc----
Q 004585 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (744)
Q Consensus 382 k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA---- 456 (744)
..+++|.|.+. .|..+++.|.+.+ ..|++.+++.+.++...... +.++.++.+|.++.+.++++
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g------~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 74 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQG------AIVGLHGTRVEKLEALAAEL-----GERVKIFPANLSDRDEVKALGQKA 74 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC------CEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHH
Confidence 35889998654 6899999998653 56777788777666554332 23577888999999888765
Q ss_pred --CcccccEEEEecCC
Q 004585 457 --SVSKARAIIVLASD 470 (744)
Q Consensus 457 --gI~~A~aVIiltdd 470 (744)
...+.|.+|-.+..
T Consensus 75 ~~~~~~id~vi~~ag~ 90 (245)
T PRK12936 75 EADLEGVDILVNNAGI 90 (245)
T ss_pred HHHcCCCCEEEECCCC
Confidence 12356788777653
No 284
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=73.73 E-value=8.8 Score=42.16 Aligned_cols=81 Identities=16% Similarity=0.107 Sum_probs=52.6
Q ss_pred CeEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhh---cccCCCcEEEEEeCCCCHHHHhccCc
Q 004585 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLE---FDFMGTSVICRSGSPLILADLKKVSV 458 (744)
Q Consensus 383 ~HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~---~~~~~~~V~~i~Gd~t~~e~L~rAgI 458 (744)
++|+|.|. |-.|..++++|...+ ..|+.+++............. ......++.++.||..+.+.|.++ +
T Consensus 16 ~~vlVtGatGfiG~~lv~~L~~~g------~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~-~ 88 (348)
T PRK15181 16 KRWLITGVAGFIGSGLLEELLFLN------QTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKA-C 88 (348)
T ss_pred CEEEEECCccHHHHHHHHHHHHCC------CEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHH-h
Confidence 57999997 667999999999754 567777764322111111110 000112577899999999888765 4
Q ss_pred ccccEEEEecCC
Q 004585 459 SKARAIIVLASD 470 (744)
Q Consensus 459 ~~A~aVIiltdd 470 (744)
++++.||=++..
T Consensus 89 ~~~d~ViHlAa~ 100 (348)
T PRK15181 89 KNVDYVLHQAAL 100 (348)
T ss_pred hCCCEEEECccc
Confidence 568988888754
No 285
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=73.72 E-value=8 Score=40.17 Aligned_cols=80 Identities=13% Similarity=0.140 Sum_probs=0.0
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCC-EEEEEccCC-----------------chHHHHHhhcCCCCcCCC----CC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVP-----------------EKEREKKLTDGGLDISGL----MN 698 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs-~v~IIe~~p-----------------~~er~~~l~~~g~~~~~L----~n 698 (744)
...+|+|+|.|..|..+++.|... |. ++++++.+. .+.|.+.+++ ++ ++
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~---Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~------~l~~~np~ 90 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAA---GVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAE------RLRAINPD 90 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHc---CCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHH------HHHHhCCC
Q ss_pred ceEEEEEcCcCCHhhHhcCCCCCcceEEEecCc
Q 004585 699 IKLVHREGNAVIRRHLESLPLETFDSMSHWKTR 731 (744)
Q Consensus 699 ~~V~~i~GD~td~~~L~e~~I~~~DavIilTde 731 (744)
+.+..+..+. +.+.+.+. +..+|.||..+|.
T Consensus 91 ~~i~~~~~~i-~~~~~~~~-~~~~DvVi~~~d~ 121 (228)
T cd00757 91 VEIEAYNERL-DAENAEEL-IAGYDLVLDCTDN 121 (228)
T ss_pred CEEEEeccee-CHHHHHHH-HhCCCEEEEcCCC
No 286
>PRK09135 pteridine reductase; Provisional
Probab=73.70 E-value=14 Score=37.71 Aligned_cols=80 Identities=19% Similarity=0.125 Sum_probs=51.4
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCC-hHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCc--
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERD-KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d-~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI-- 458 (744)
.+++|.|.+. .|..++++|.+.+ ..|+++++. ++..+.....+. +.....+.++.+|.++++.+.++--
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g------~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 79 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAG------YRVAIHYHRSAAEADALAAELN-ALRPGSAAALQADLLDPDALPELVAAC 79 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC------CEEEEEcCCCHHHHHHHHHHHH-hhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 5799999765 6899999998643 567777764 333333222110 1112357789999999988776422
Q ss_pred ----ccccEEEEecC
Q 004585 459 ----SKARAIIVLAS 469 (744)
Q Consensus 459 ----~~A~aVIiltd 469 (744)
...|.||-++.
T Consensus 80 ~~~~~~~d~vi~~ag 94 (249)
T PRK09135 80 VAAFGRLDALVNNAS 94 (249)
T ss_pred HHHcCCCCEEEECCC
Confidence 24678777765
No 287
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=73.69 E-value=5.1 Score=46.28 Aligned_cols=36 Identities=11% Similarity=0.099 Sum_probs=30.9
Q ss_pred CCCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCC
Q 004585 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 678 (744)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p 678 (744)
...++|+|+|+|..|...+..|... |.+|++++..+
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~---G~~V~i~e~~~ 174 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARA---GVQVVVFDRHP 174 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHc---CCeEEEEecCC
Confidence 3567999999999999999999764 89999999754
No 288
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=73.67 E-value=7.7 Score=41.07 Aligned_cols=78 Identities=14% Similarity=0.162 Sum_probs=50.3
Q ss_pred eEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCCh--HHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCccc
Q 004585 384 HILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDK--EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (744)
Q Consensus 384 HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~--e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (744)
+|+|.|. |-.|..++++|...+. ...|++++... ...+. ++... ...++.++.||.++++.+.++ ++.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~----~~~v~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~Dl~~~~~~~~~-~~~ 71 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHP----DAEVIVLDKLTYAGNLEN-LADLE---DNPRYRFVKGDIGDRELVSRL-FTE 71 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCC----CCEEEEecCCCcchhhhh-hhhhc---cCCCcEEEEcCCcCHHHHHHH-Hhh
Confidence 4789997 5679999999987531 24566666432 11111 11110 123577899999999998876 333
Q ss_pred --ccEEEEecCC
Q 004585 461 --ARAIIVLASD 470 (744)
Q Consensus 461 --A~aVIiltdd 470 (744)
+|.||-++..
T Consensus 72 ~~~d~vi~~a~~ 83 (317)
T TIGR01181 72 HQPDAVVHFAAE 83 (317)
T ss_pred cCCCEEEEcccc
Confidence 8999988854
No 289
>PRK04457 spermidine synthase; Provisional
Probab=73.59 E-value=15 Score=39.13 Aligned_cols=80 Identities=10% Similarity=0.074 Sum_probs=47.3
Q ss_pred CCCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCC
Q 004585 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (744)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I 719 (744)
..+++||.+|.|. |. ++..+.++ .++.+++.+|.+| +-.+...+. +..... +-.+.+++||+.+ .+++.+
T Consensus 65 ~~~~~vL~IG~G~-G~-l~~~l~~~-~p~~~v~~VEidp--~vi~~A~~~-f~~~~~-~~rv~v~~~Da~~--~l~~~~- 134 (262)
T PRK04457 65 PRPQHILQIGLGG-GS-LAKFIYTY-LPDTRQTAVEINP--QVIAVARNH-FELPEN-GERFEVIEADGAE--YIAVHR- 134 (262)
T ss_pred CCCCEEEEECCCH-hH-HHHHHHHh-CCCCeEEEEECCH--HHHHHHHHH-cCCCCC-CCceEEEECCHHH--HHHhCC-
Confidence 3567999999885 33 55555443 3688999999864 444433221 100011 1234458899864 455443
Q ss_pred CCcceEEEec
Q 004585 720 ETFDSMSHWK 729 (744)
Q Consensus 720 ~~~DavIilT 729 (744)
+.||.|++=.
T Consensus 135 ~~yD~I~~D~ 144 (262)
T PRK04457 135 HSTDVILVDG 144 (262)
T ss_pred CCCCEEEEeC
Confidence 6899998744
No 290
>PRK06182 short chain dehydrogenase; Validated
Probab=73.56 E-value=8.8 Score=40.27 Aligned_cols=73 Identities=10% Similarity=0.029 Sum_probs=52.4
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--- 717 (744)
.++++|.|+ |.+|..++++|.+ .|.+|.++..+ .++.+.+.+ .+ +..+.+|.+|.+.+++.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~---~G~~V~~~~r~--~~~l~~~~~--------~~--~~~~~~Dv~~~~~~~~~~~~ 67 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAA---QGYTVYGAARR--VDKMEDLAS--------LG--VHPLSLDVTDEASIKAAVDT 67 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHh--------CC--CeEEEeeCCCHHHHHHHHHH
Confidence 358999997 7899999999976 48999998864 344444433 12 33578999999887653
Q ss_pred ---CCCCcceEEEec
Q 004585 718 ---PLETFDSMSHWK 729 (744)
Q Consensus 718 ---~I~~~DavIilT 729 (744)
.....|.+|..+
T Consensus 68 ~~~~~~~id~li~~a 82 (273)
T PRK06182 68 IIAEEGRIDVLVNNA 82 (273)
T ss_pred HHHhcCCCCEEEECC
Confidence 124678888766
No 291
>PRK07060 short chain dehydrogenase; Provisional
Probab=73.55 E-value=10 Score=38.67 Aligned_cols=75 Identities=16% Similarity=0.014 Sum_probs=52.5
Q ss_pred CeEEEEccc-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC--cc
Q 004585 383 NHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--VS 459 (744)
Q Consensus 383 ~HIII~G~g-~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--I~ 459 (744)
+.++|.|.+ ..|..+++.|...+ +.|++++++++..+++... .++.++.+|.++.+.++++- ..
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g------~~V~~~~r~~~~~~~~~~~-------~~~~~~~~D~~~~~~v~~~~~~~~ 76 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRG------ARVVAAARNAAALDRLAGE-------TGCEPLRLDVGDDAAIRAALAAAG 76 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHH-------hCCeEEEecCCCHHHHHHHHHHhC
Confidence 578999984 57999999998643 5788888887766554332 13557889999988776642 23
Q ss_pred cccEEEEecCC
Q 004585 460 KARAIIVLASD 470 (744)
Q Consensus 460 ~A~aVIiltdd 470 (744)
..|.+|-.+..
T Consensus 77 ~~d~vi~~ag~ 87 (245)
T PRK07060 77 AFDGLVNCAGI 87 (245)
T ss_pred CCCEEEECCCC
Confidence 46777776643
No 292
>PRK08265 short chain dehydrogenase; Provisional
Probab=73.50 E-value=11 Score=39.37 Aligned_cols=76 Identities=9% Similarity=0.042 Sum_probs=52.9
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--- 717 (744)
.++++|.|+ |.+|..+++.|.+ .|.+|.+++.+ .++.+.+.+ .+ +..+..+.+|.+|++.+++.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~---~G~~V~~~~r~--~~~~~~~~~------~~-~~~~~~~~~Dl~~~~~~~~~~~~ 73 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVA---AGARVAIVDID--ADNGAAVAA------SL-GERARFIATDITDDAAIERAVAT 73 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHH------Hh-CCeeEEEEecCCCHHHHHHHHHH
Confidence 368999998 7789999999976 48999998864 344444443 12 22355689999999877642
Q ss_pred ---CCCCcceEEEec
Q 004585 718 ---PLETFDSMSHWK 729 (744)
Q Consensus 718 ---~I~~~DavIilT 729 (744)
.....|.+|...
T Consensus 74 ~~~~~g~id~lv~~a 88 (261)
T PRK08265 74 VVARFGRVDILVNLA 88 (261)
T ss_pred HHHHhCCCCEEEECC
Confidence 124568887654
No 293
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=73.43 E-value=8.8 Score=41.95 Aligned_cols=72 Identities=14% Similarity=0.119 Sum_probs=49.2
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcC-CHhhHhcCCCC
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAV-IRRHLESLPLE 720 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~t-d~~~L~e~~I~ 720 (744)
++|+|.|+ |-+|..+++.|.+. .|.+|+.++.. .++...+.. .++ +.+++||.+ +.+.+.++ +.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~--~~~~V~~~~r~--~~~~~~~~~-------~~~--~~~~~~Dl~~~~~~~~~~-~~ 67 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILET--TDWEVYGMDMQ--TDRLGDLVN-------HPR--MHFFEGDITINKEWIEYH-VK 67 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhC--CCCeEEEEeCc--HHHHHHhcc-------CCC--eEEEeCCCCCCHHHHHHH-Hc
Confidence 37999998 99999999999652 36889988753 222222211 122 445889998 77777664 55
Q ss_pred CcceEEEe
Q 004585 721 TFDSMSHW 728 (744)
Q Consensus 721 ~~DavIil 728 (744)
.+|.||=+
T Consensus 68 ~~d~ViH~ 75 (347)
T PRK11908 68 KCDVILPL 75 (347)
T ss_pred CCCEEEEC
Confidence 78998843
No 294
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=73.39 E-value=7.9 Score=39.46 Aligned_cols=86 Identities=16% Similarity=0.078 Sum_probs=51.7
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCC-EEEEEccCCchH-------------------HHHHhhcCCCCcCCCCCce
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEKE-------------------REKKLTDGGLDISGLMNIK 700 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs-~v~IIe~~p~~e-------------------r~~~l~~~g~~~~~L~n~~ 700 (744)
...+|+|+|.|..|..+++-|... |. ++++++.+.-++ |++.+++ .+ ...-+++.
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~---GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~-~L-~~lNp~v~ 92 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLA---GIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYE-FL-QELNPNVK 92 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHc---CCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHH-HH-HHHCCCCE
Confidence 346899999999999999999753 54 488888642211 1111111 00 00126677
Q ss_pred EEEEEcCcCC-HhhHhcCCCCCcceEEEecCch
Q 004585 701 LVHREGNAVI-RRHLESLPLETFDSMSHWKTRL 732 (744)
Q Consensus 701 V~~i~GD~td-~~~L~e~~I~~~DavIilTde~ 732 (744)
+..+..+.++ .+... .-+.++|.||..+|..
T Consensus 93 i~~~~~~~~~~~~~~~-~~~~~~dvVi~~~d~~ 124 (198)
T cd01485 93 LSIVEEDSLSNDSNIE-EYLQKFTLVIATEENY 124 (198)
T ss_pred EEEEecccccchhhHH-HHHhCCCEEEECCCCH
Confidence 7777777652 22222 2256899988887653
No 295
>PRK07814 short chain dehydrogenase; Provisional
Probab=73.39 E-value=13 Score=38.83 Aligned_cols=80 Identities=9% Similarity=0.082 Sum_probs=54.7
Q ss_pred cCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC---
Q 004585 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (744)
Q Consensus 382 k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (744)
.+.++|.|.+. .|..+++.|...+ ..|++++++++..++..+.... .+.++.++.+|.++++.++++-
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G------~~Vi~~~r~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 81 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAG------ADVLIAARTESQLDEVAEQIRA--AGRRAHVVAADLAHPEATAGLAGQA 81 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHH
Confidence 35688888775 6889999998643 5788888887766655443211 1345788899999999887541
Q ss_pred ---cccccEEEEecC
Q 004585 458 ---VSKARAIIVLAS 469 (744)
Q Consensus 458 ---I~~A~aVIiltd 469 (744)
..+.|.+|-.+.
T Consensus 82 ~~~~~~id~vi~~Ag 96 (263)
T PRK07814 82 VEAFGRLDIVVNNVG 96 (263)
T ss_pred HHHcCCCCEEEECCC
Confidence 135677776654
No 296
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=73.34 E-value=12 Score=40.61 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=50.0
Q ss_pred eEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCC--chHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC-CC
Q 004585 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVP--EKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-PL 719 (744)
Q Consensus 644 rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p--~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~-~I 719 (744)
+|+|.|+ |-+|..+++.|.+ .|.+|++++... ...+...+.+ +.+..+.++.+|.+|.+.++++ .-
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~---~g~~V~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Dl~d~~~~~~~~~~ 71 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQ---NGHDVVILDNLCNSKRSVLPVIER-------LGGKHPTFVEGDIRNEALLTEILHD 71 (338)
T ss_pred eEEEECCCChHHHHHHHHHHH---CCCeEEEEecCCCchHhHHHHHHH-------hcCCCceEEEccCCCHHHHHHHHhc
Confidence 6899996 8999999999975 488999986421 1111111211 1122244578999999987653 22
Q ss_pred CCcceEEEec
Q 004585 720 ETFDSMSHWK 729 (744)
Q Consensus 720 ~~~DavIilT 729 (744)
...|.+|-++
T Consensus 72 ~~~d~vvh~a 81 (338)
T PRK10675 72 HAIDTVIHFA 81 (338)
T ss_pred CCCCEEEECC
Confidence 3589998875
No 297
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=73.33 E-value=7.3 Score=42.40 Aligned_cols=72 Identities=19% Similarity=0.308 Sum_probs=51.2
Q ss_pred eEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC-CCCC
Q 004585 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-PLET 721 (744)
Q Consensus 644 rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~-~I~~ 721 (744)
+|||.|| |=+|...+.+|-+ .|.+|.|++.--.--+. .+....+.+++||..|++.|.+. .=.+
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll~---~G~~vvV~DNL~~g~~~-----------~v~~~~~~f~~gDi~D~~~L~~vf~~~~ 67 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLLK---TGHEVVVLDNLSNGHKI-----------ALLKLQFKFYEGDLLDRALLTAVFEENK 67 (329)
T ss_pred eEEEecCcchhHHHHHHHHHH---CCCeEEEEecCCCCCHH-----------HhhhccCceEEeccccHHHHHHHHHhcC
Confidence 6899988 8899999999976 59999999974222111 12222144689999999999872 2346
Q ss_pred cceEEEec
Q 004585 722 FDSMSHWK 729 (744)
Q Consensus 722 ~DavIilT 729 (744)
.|+||-.+
T Consensus 68 idaViHFA 75 (329)
T COG1087 68 IDAVVHFA 75 (329)
T ss_pred CCEEEECc
Confidence 78887655
No 298
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=73.30 E-value=13 Score=38.31 Aligned_cols=78 Identities=12% Similarity=0.068 Sum_probs=52.9
Q ss_pred eEEEEccc-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhcc------
Q 004585 384 HILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV------ 456 (744)
Q Consensus 384 HIII~G~g-~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA------ 456 (744)
.++|.|.+ ..|..++++|.+.+ ..|++++++++..+...+++. -.+.++.++.+|.++++.++++
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G------~~v~~~~r~~~~~~~~~~~l~--~~~~~~~~~~~Dl~~~~~i~~~~~~~~~ 73 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDG------FAVAVADLNEETAKETAKEIN--QAGGKAVAYKLDVSDKDQVFSAIDQAAE 73 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHH--hcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 58899864 46899999998653 568888887766555443321 1234678889999998887664
Q ss_pred CcccccEEEEecC
Q 004585 457 SVSKARAIIVLAS 469 (744)
Q Consensus 457 gI~~A~aVIiltd 469 (744)
.....+.+|-.+.
T Consensus 74 ~~~~id~vi~~ag 86 (254)
T TIGR02415 74 KFGGFDVMVNNAG 86 (254)
T ss_pred HcCCCCEEEECCC
Confidence 1224577777664
No 299
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=73.22 E-value=12 Score=37.37 Aligned_cols=82 Identities=13% Similarity=0.024 Sum_probs=50.0
Q ss_pred eEEEEcccchHHHHHHHHHhhcCCCC-EEEEEccCC----chH------------HHHHhhcCCCCcCCCCCceEEEEEc
Q 004585 644 KILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVP----EKE------------REKKLTDGGLDISGLMNIKLVHREG 706 (744)
Q Consensus 644 rILI~Gwg~~g~~l~~~L~~~~~~gs-~v~IIe~~p----~~e------------r~~~l~~~g~~~~~L~n~~V~~i~G 706 (744)
+|+|+|.|-.|..+++.|... |. ++++++.+. +-. |.+.+.+ .+ ...-+++.+..+..
T Consensus 1 ~VlViG~GglGs~ia~~La~~---Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~-~l-~~lnp~v~i~~~~~ 75 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS---GVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKE-NL-REINPFVKIEAINI 75 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc---CCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHH-HH-HHHCCCCEEEEEEe
Confidence 589999999999999999763 65 599998752 111 1111111 00 00125666666666
Q ss_pred CcCCHhhHhcCCCCCcceEEEecCch
Q 004585 707 NAVIRRHLESLPLETFDSMSHWKTRL 732 (744)
Q Consensus 707 D~td~~~L~e~~I~~~DavIilTde~ 732 (744)
..+. +.+++ -++.+|.||..+|..
T Consensus 76 ~~~~-~~~~~-~l~~~DlVi~~~d~~ 99 (174)
T cd01487 76 KIDE-NNLEG-LFGDCDIVVEAFDNA 99 (174)
T ss_pred ecCh-hhHHH-HhcCCCEEEECCCCH
Confidence 5544 33333 267899999887653
No 300
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=73.17 E-value=25 Score=41.40 Aligned_cols=120 Identities=13% Similarity=0.043 Sum_probs=73.1
Q ss_pred cCeEEEEccc-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCccc
Q 004585 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (744)
Q Consensus 382 k~HIII~G~g-~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (744)
...|+|.|+| ..|.++++|+...+. ..+++.++|+..+..+..++...+...++.++.||..|.+-++++ .++
T Consensus 250 gK~vLVTGagGSiGsel~~qil~~~p-----~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~-~~~ 323 (588)
T COG1086 250 GKTVLVTGGGGSIGSELCRQILKFNP-----KEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERA-MEG 323 (588)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHhcCC-----CEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHH-Hhc
Confidence 3466677765 469999999998753 578888998866555444443223346788999999999999987 333
Q ss_pred --ccEEEEecCC-C------CCCcchHHHHHHHHHHhhhcCCCCccEEEEecCCCC
Q 004585 461 --ARAIIVLASD-E------NADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDN 507 (744)
Q Consensus 461 --A~aVIiltdd-~------~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d~e~ 507 (744)
-|.|+=.+-- + ++.+.=..|+.-+..+-+.....+...++-+..++.
T Consensus 324 ~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKA 379 (588)
T COG1086 324 HKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKA 379 (588)
T ss_pred CCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcc
Confidence 6666654432 1 334444556655443332211112345555555443
No 301
>PRK05876 short chain dehydrogenase; Provisional
Probab=73.02 E-value=13 Score=39.36 Aligned_cols=79 Identities=15% Similarity=0.093 Sum_probs=53.1
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC----
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (744)
..++|.|.+. .|..++++|...+ ..|++++++++.+++..+++.. .+.++.++..|.++++.++++-
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G------~~Vv~~~r~~~~l~~~~~~l~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~ 78 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRG------ARVVLGDVDKPGLRQAVNHLRA--EGFDVHGVMCDVRHREEVTHLADEAF 78 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 4688888665 6889999998653 5688888888776665443311 1335778889999988877641
Q ss_pred --cccccEEEEecC
Q 004585 458 --VSKARAIIVLAS 469 (744)
Q Consensus 458 --I~~A~aVIiltd 469 (744)
..+-|.+|-.+.
T Consensus 79 ~~~g~id~li~nAg 92 (275)
T PRK05876 79 RLLGHVDVVFSNAG 92 (275)
T ss_pred HHcCCCCEEEECCC
Confidence 123466666554
No 302
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=72.82 E-value=14 Score=39.96 Aligned_cols=80 Identities=20% Similarity=0.087 Sum_probs=55.6
Q ss_pred cCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCc--
Q 004585 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (744)
Q Consensus 382 k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI-- 458 (744)
...++|.|.+. .|..++++|...+ ..|+++.++++..+...+++. ..+.++.++.+|.++.+.++++--
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~~G------~~V~~~~r~~~~~~~~~~~l~--~~~~~~~~~~~Dl~~~~~v~~~~~~~ 77 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAKRG------WHVIMACRNLKKAEAAAQELG--IPPDSYTIIHIDLGDLDSVRRFVDDF 77 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHHhh--ccCCceEEEEecCCCHHHHHHHHHHH
Confidence 34688998765 6889999998653 578888888777666554431 113467889999999988776422
Q ss_pred ----ccccEEEEecC
Q 004585 459 ----SKARAIIVLAS 469 (744)
Q Consensus 459 ----~~A~aVIiltd 469 (744)
...|.+|-.+.
T Consensus 78 ~~~~~~iD~li~nAg 92 (322)
T PRK07453 78 RALGKPLDALVCNAA 92 (322)
T ss_pred HHhCCCccEEEECCc
Confidence 24677777654
No 303
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=72.67 E-value=9.4 Score=42.52 Aligned_cols=73 Identities=8% Similarity=-0.019 Sum_probs=51.8
Q ss_pred CCceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCC
Q 004585 641 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (744)
Q Consensus 641 ~~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I 719 (744)
..++|+|.|+ |-+|..+++.|.+ .|.+|+.++..++ ..+.+. .+ .+.++.||.+|.+.+.+. +
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~---~G~~V~~v~r~~~----~~~~~~-----~~---~~~~~~~Dl~d~~~~~~~-~ 83 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKA---EGHYIIASDWKKN----EHMSED-----MF---CHEFHLVDLRVMENCLKV-T 83 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHh---CCCEEEEEEeccc----cccccc-----cc---cceEEECCCCCHHHHHHH-H
Confidence 4578999999 9999999999976 3889999985321 111110 11 123478999999888765 4
Q ss_pred CCcceEEEec
Q 004585 720 ETFDSMSHWK 729 (744)
Q Consensus 720 ~~~DavIilT 729 (744)
..+|.|+-+.
T Consensus 84 ~~~D~Vih~A 93 (370)
T PLN02695 84 KGVDHVFNLA 93 (370)
T ss_pred hCCCEEEEcc
Confidence 5689988886
No 304
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=72.54 E-value=14 Score=38.18 Aligned_cols=79 Identities=19% Similarity=0.150 Sum_probs=53.2
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC----
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (744)
..++|.|.+. .|..++++|.+.+ ..|++++++++..++..+++.. .+.++.++.+|.++++.++++-
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G------~~vvl~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~ 81 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYG------AEIIINDITAERAELAVAKLRQ--EGIKAHAAPFNVTHKQEVEAAIEHIE 81 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcC------CEEEEEcCCHHHHHHHHHHHHh--cCCeEEEEecCCCCHHHHHHHHHHHH
Confidence 4688888755 6899999998643 6788899887766655443211 1235677888988888776541
Q ss_pred --cccccEEEEecC
Q 004585 458 --VSKARAIIVLAS 469 (744)
Q Consensus 458 --I~~A~aVIiltd 469 (744)
....|.+|-.+.
T Consensus 82 ~~~~~id~vi~~ag 95 (254)
T PRK08085 82 KDIGPIDVLINNAG 95 (254)
T ss_pred HhcCCCCEEEECCC
Confidence 123577776664
No 305
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=72.31 E-value=11 Score=41.27 Aligned_cols=80 Identities=19% Similarity=0.112 Sum_probs=52.1
Q ss_pred eEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEc--CcCCHhhHhcCCCCC
Q 004585 644 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREG--NAVIRRHLESLPLET 721 (744)
Q Consensus 644 rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~G--D~td~~~L~e~~I~~ 721 (744)
||.|+|.|-+|.+++..|.+. |.+|+++-.. ++.+.+.+.|+ .+....| +......-..+....
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~---g~~V~~~~R~---~~~~~l~~~GL--------~i~~~~~~~~~~~~~~~~~~~~~~ 67 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKA---GHDVTLLVRS---RRLEALKKKGL--------RIEDEGGNFTTPVVAATDAEALGP 67 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhC---CCeEEEEecH---HHHHHHHhCCe--------EEecCCCccccccccccChhhcCC
Confidence 799999999999999999875 6788888853 34566665453 2222222 122233333455668
Q ss_pred cceEEEec---Cchhhhhh
Q 004585 722 FDSMSHWK---TRLCILTH 737 (744)
Q Consensus 722 ~DavIilT---de~ni~t~ 737 (744)
+|.+|+.+ |-..++..
T Consensus 68 ~Dlviv~vKa~q~~~al~~ 86 (307)
T COG1893 68 ADLVIVTVKAYQLEEALPS 86 (307)
T ss_pred CCEEEEEeccccHHHHHHH
Confidence 99999988 44444443
No 306
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=72.30 E-value=8.4 Score=39.84 Aligned_cols=77 Identities=9% Similarity=0.031 Sum_probs=52.9
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCC--CceEEEEEcCcCCHhhHhcC-
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM--NIKLVHREGNAVIRRHLESL- 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~--n~~V~~i~GD~td~~~L~e~- 717 (744)
.++++|.|+ |.+|..+++.|.+ .|.+|.+++.. +++.+.+.+ .++ +..+..+.+|.+|++.++++
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~---~G~~V~~~~r~--~~~~~~~~~------~i~~~~~~~~~~~~D~~~~~~~~~~~ 78 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQ---AGAEVILNGRD--PAKLAAAAE------SLKGQGLSAHALAFDVTDHDAVRAAI 78 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHH---cCCEEEEEeCC--HHHHHHHHH------HHHhcCceEEEEEccCCCHHHHHHHH
Confidence 468999998 7899999999976 48899888764 333333322 111 23455688999999877653
Q ss_pred -----CCCCcceEEEec
Q 004585 718 -----PLETFDSMSHWK 729 (744)
Q Consensus 718 -----~I~~~DavIilT 729 (744)
.....|.+|...
T Consensus 79 ~~~~~~~~~~d~li~~a 95 (255)
T PRK07523 79 DAFEAEIGPIDILVNNA 95 (255)
T ss_pred HHHHHhcCCCCEEEECC
Confidence 134578887766
No 307
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=72.29 E-value=10 Score=40.56 Aligned_cols=70 Identities=21% Similarity=0.274 Sum_probs=48.0
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCC-CEEEEEccCCchHHHHHhhcCCCCcCCCCCce-EEEEEcCcCCHhhHhcCC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEKEREKKLTDGGLDISGLMNIK-LVHREGNAVIRRHLESLP 718 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g-s~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~-V~~i~GD~td~~~L~e~~ 718 (744)
..++++|+|.|..+..++..|.+. | .+|++++.. .++.+.+++ .+.... +. + + . .+ ...
T Consensus 122 ~~k~vlVlGaGg~a~ai~~aL~~~---g~~~V~v~~R~--~~~a~~l~~------~~~~~~~~~-~--~-~---~~-~~~ 182 (278)
T PRK00258 122 KGKRILILGAGGAARAVILPLLDL---GVAEITIVNRT--VERAEELAK------LFGALGKAE-L--D-L---EL-QEE 182 (278)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHc---CCCEEEEEeCC--HHHHHHHHH------Hhhhcccee-e--c-c---cc-hhc
Confidence 346899999999999999999863 7 789999974 578777775 222110 10 1 0 0 11 234
Q ss_pred CCCcceEEEec
Q 004585 719 LETFDSMSHWK 729 (744)
Q Consensus 719 I~~~DavIilT 729 (744)
+.++|.+|..|
T Consensus 183 ~~~~DivInaT 193 (278)
T PRK00258 183 LADFDLIINAT 193 (278)
T ss_pred cccCCEEEECC
Confidence 67899999888
No 308
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=72.24 E-value=5.3 Score=45.85 Aligned_cols=34 Identities=12% Similarity=0.020 Sum_probs=29.9
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~ 677 (744)
..++|+|+|+|..|...+..|.+. |.+|+|++..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~---G~~V~vie~~ 165 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKA---GHSVTVFEAL 165 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC---CCcEEEEecC
Confidence 457999999999999999999864 8999999964
No 309
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=72.13 E-value=7 Score=42.26 Aligned_cols=41 Identities=17% Similarity=0.180 Sum_probs=33.5
Q ss_pred eEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcC
Q 004585 644 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDG 689 (744)
Q Consensus 644 rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~ 689 (744)
+|.|+|.|..|..++..|.+ .|.+|++++.. +++.+.+.+.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~---~g~~V~~~~r~--~~~~~~~~~~ 43 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLAR---NGHDVTLWARD--PEQAAEINAD 43 (325)
T ss_pred EEEEECCCHHHHHHHHHHHh---CCCEEEEEECC--HHHHHHHHHc
Confidence 69999999999999999976 38899999864 4666666653
No 310
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=72.11 E-value=8.4 Score=40.75 Aligned_cols=68 Identities=13% Similarity=0.107 Sum_probs=49.6
Q ss_pred eEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC-----
Q 004585 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL----- 717 (744)
Q Consensus 644 rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~----- 717 (744)
+|+|.|+ |.+|..++++|.+ .|.+|+++...+. +.. ..++. ++.||..|.+.|+++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~---~g~~V~~~~R~~~--~~~-----------~~~~~--~~~~d~~d~~~l~~a~~~~~ 62 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQA---ASVPFLVASRSSS--SSA-----------GPNEK--HVKFDWLDEDTWDNPFSSDD 62 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHh---CCCcEEEEeCCCc--ccc-----------CCCCc--cccccCCCHHHHHHHHhccc
Confidence 4899999 9999999999976 4889999987653 111 12333 367999999999774
Q ss_pred CCCC-cceEEEec
Q 004585 718 PLET-FDSMSHWK 729 (744)
Q Consensus 718 ~I~~-~DavIilT 729 (744)
.+.. +|.++.++
T Consensus 63 ~~~g~~d~v~~~~ 75 (285)
T TIGR03649 63 GMEPEISAVYLVA 75 (285)
T ss_pred CcCCceeEEEEeC
Confidence 2344 78887665
No 311
>PRK07904 short chain dehydrogenase; Provisional
Probab=72.11 E-value=12 Score=38.96 Aligned_cols=82 Identities=20% Similarity=0.107 Sum_probs=52.3
Q ss_pred cCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHH-HHHHHHhhhcccCCCcEEEEEeCCCCHHHHhcc---
Q 004585 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEE-MEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--- 456 (744)
Q Consensus 382 k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~-le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA--- 456 (744)
.++++|.|.+. .|..++++|...+ +..|+++.++++. .++..++... ....++.++.+|.++++..+++
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~g-----g~~V~~~~r~~~~~~~~~~~~l~~-~~~~~v~~~~~D~~~~~~~~~~~~~ 81 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKNA-----PARVVLAALPDDPRRDAAVAQMKA-AGASSVEVIDFDALDTDSHPKVIDA 81 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcC-----CCeEEEEeCCcchhHHHHHHHHHh-cCCCceEEEEecCCChHHHHHHHHH
Confidence 45799999876 5889999998642 2577788877654 5554443211 1123688899999988864432
Q ss_pred --CcccccEEEEecC
Q 004585 457 --SVSKARAIIVLAS 469 (744)
Q Consensus 457 --gI~~A~aVIiltd 469 (744)
.-.+.|.+|..+.
T Consensus 82 ~~~~g~id~li~~ag 96 (253)
T PRK07904 82 AFAGGDVDVAIVAFG 96 (253)
T ss_pred HHhcCCCCEEEEeee
Confidence 0135677776543
No 312
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=72.04 E-value=13 Score=40.07 Aligned_cols=78 Identities=17% Similarity=0.092 Sum_probs=51.3
Q ss_pred CeEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHH---HHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCc
Q 004585 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEE---MEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (744)
Q Consensus 383 ~HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~---le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI 458 (744)
..|+|.|. |-.|..++++|.+.+ +.|+++.++.+. ++..... .-...++.++.||.++++.+.++ +
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~g------~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~-~ 75 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLRG------YTVKATVRDLTDRKKTEHLLAL---DGAKERLKLFKADLLEESSFEQA-I 75 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC------CEEEEEECCCcchHHHHHHHhc---cCCCCceEEEecCCCCcchHHHH-H
Confidence 47899996 456999999998754 456655444432 2222110 00123578899999999988776 3
Q ss_pred ccccEEEEecCC
Q 004585 459 SKARAIIVLASD 470 (744)
Q Consensus 459 ~~A~aVIiltdd 470 (744)
+.+|.||-++..
T Consensus 76 ~~~d~vih~A~~ 87 (322)
T PLN02986 76 EGCDAVFHTASP 87 (322)
T ss_pred hCCCEEEEeCCC
Confidence 468899888864
No 313
>PRK06924 short chain dehydrogenase; Provisional
Probab=71.94 E-value=12 Score=38.36 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=44.5
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhc
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES 716 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e 716 (744)
++++|.|+ |.+|..++++|.+ .|.+|.++...+. ++.+.+.+ .. ...+..+.+|.+|.+.+++
T Consensus 2 k~vlItGasggiG~~ia~~l~~---~g~~V~~~~r~~~-~~~~~~~~------~~-~~~~~~~~~D~~~~~~~~~ 65 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLE---KGTHVISISRTEN-KELTKLAE------QY-NSNLTFHSLDLQDVHELET 65 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHh---cCCEEEEEeCCch-HHHHHHHh------cc-CCceEEEEecCCCHHHHHH
Confidence 47899997 7899999999976 4889999886542 34444433 11 1234458899999988864
No 314
>PRK09291 short chain dehydrogenase; Provisional
Probab=71.84 E-value=12 Score=38.63 Aligned_cols=78 Identities=10% Similarity=0.000 Sum_probs=52.4
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCC
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~~ 721 (744)
++++|.|+ |.+|..+++.|.+ .|..|.++...+ +..+.+.+.. .-.+..+..+.+|.+|.+.++++--..
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~---~G~~v~~~~r~~--~~~~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~~~ 73 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLAR---KGHNVIAGVQIA--PQVTALRAEA----ARRGLALRVEKLDLTDAIDRAQAAEWD 73 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHHH----HhcCCcceEEEeeCCCHHHHHHHhcCC
Confidence 47999998 6789999999976 488888887643 3333333200 001123445889999999888753347
Q ss_pred cceEEEec
Q 004585 722 FDSMSHWK 729 (744)
Q Consensus 722 ~DavIilT 729 (744)
.|.+|..+
T Consensus 74 id~vi~~a 81 (257)
T PRK09291 74 VDVLLNNA 81 (257)
T ss_pred CCEEEECC
Confidence 88888754
No 315
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=71.81 E-value=6.8 Score=39.75 Aligned_cols=78 Identities=14% Similarity=0.093 Sum_probs=51.6
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC--C-
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--P- 718 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--~- 718 (744)
++++|.|+ |.+|..+++.|.+ .|.+|.++...+ ++.+.+.+. + +-.+..+..+.+|.+|.+.+.+. +
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~---~g~~v~~~~r~~--~~~~~~~~~-~---~~~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAA---DGAKVVIYDSNE--EAAEALAAE-L---RAAGGEARVLVFDVSDEAAVRALIEAA 76 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHH---CCCEEEEEeCCh--hHHHHHHHH-H---HhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 58999998 6789999999976 488899988754 333333220 0 00123355578999999876542 1
Q ss_pred ---CCCcceEEEec
Q 004585 719 ---LETFDSMSHWK 729 (744)
Q Consensus 719 ---I~~~DavIilT 729 (744)
....|.+|-.+
T Consensus 77 ~~~~~~id~vi~~a 90 (246)
T PRK05653 77 VEAFGALDILVNNA 90 (246)
T ss_pred HHHhCCCCEEEECC
Confidence 24568888876
No 316
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=71.72 E-value=16 Score=37.44 Aligned_cols=80 Identities=11% Similarity=0.093 Sum_probs=55.1
Q ss_pred cCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC---
Q 004585 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (744)
Q Consensus 382 k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (744)
.+.++|.|.+. .|..++++|.+.+ ..|++++++.+..+.+.+.... .+.++.++.+|.++++.++++-
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g------~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~ 74 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEG------AKVAVFDLNREAAEKVAADIRA--KGGNAQAFACDITDRDSVDTAVAAA 74 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC------CEEEEecCCHHHHHHHHHHHHh--cCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 35788898655 6899999998753 5788888887665554332210 1345888999999998887751
Q ss_pred ---cccccEEEEecC
Q 004585 458 ---VSKARAIIVLAS 469 (744)
Q Consensus 458 ---I~~A~aVIiltd 469 (744)
....|.+|..+.
T Consensus 75 ~~~~~~~d~vi~~ag 89 (250)
T TIGR03206 75 EQALGPVDVLVNNAG 89 (250)
T ss_pred HHHcCCCCEEEECCC
Confidence 124677887775
No 317
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=71.67 E-value=40 Score=34.39 Aligned_cols=35 Identities=26% Similarity=0.261 Sum_probs=29.3
Q ss_pred ecCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCC
Q 004585 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERD 420 (744)
Q Consensus 381 ~k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d 420 (744)
.+-+|+|+|.|..|..+++.|...+- ..+.++|.|
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv-----~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGV-----GTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCC-----CeEEEecCC
Confidence 45699999999999999999997652 367888887
No 318
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=71.65 E-value=10 Score=43.18 Aligned_cols=72 Identities=22% Similarity=0.278 Sum_probs=56.0
Q ss_pred cCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCcccc
Q 004585 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (744)
Q Consensus 382 k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (744)
..+++|+|+|+.+.-+++.|...+. ..|+++.+..++.+++..++ + |.+...+.|... +..|
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~-----~~i~IaNRT~erA~~La~~~-------~-----~~~~~l~el~~~-l~~~ 239 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGV-----KKITIANRTLERAEELAKKL-------G-----AEAVALEELLEA-LAEA 239 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCC-----CEEEEEcCCHHHHHHHHHHh-------C-----CeeecHHHHHHh-hhhC
Confidence 3589999999999999999987542 57899999999888877653 1 455555665554 7799
Q ss_pred cEEEEecCCC
Q 004585 462 RAIIVLASDE 471 (744)
Q Consensus 462 ~aVIiltdd~ 471 (744)
|.||..|..+
T Consensus 240 DvVissTsa~ 249 (414)
T COG0373 240 DVVISSTSAP 249 (414)
T ss_pred CEEEEecCCC
Confidence 9999998653
No 319
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=71.60 E-value=10 Score=39.06 Aligned_cols=85 Identities=11% Similarity=0.041 Sum_probs=52.0
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCC-EEEEEccCCch----------------HHHHHhhcCCCCcCCCCCceEEE
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEK----------------EREKKLTDGGLDISGLMNIKLVH 703 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs-~v~IIe~~p~~----------------er~~~l~~~g~~~~~L~n~~V~~ 703 (744)
...+|+|+|.|-.|..+++.|... |. ++++++.+.-+ .|.+.+++ .+ ...-+++.+..
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~---Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~-~l-~~lnp~v~v~~ 101 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARS---GVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKE-NL-LEINPFVEIEA 101 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHc---CCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHH-HH-HHHCCCCEEEE
Confidence 456899999999999999999763 54 48898875111 11111111 00 00125566666
Q ss_pred EEcCcCCHhhHhcCCCCCcceEEEecCch
Q 004585 704 REGNAVIRRHLESLPLETFDSMSHWKTRL 732 (744)
Q Consensus 704 i~GD~td~~~L~e~~I~~~DavIilTde~ 732 (744)
+....++. .+.+ -++.+|.||..+|..
T Consensus 102 ~~~~i~~~-~~~~-~~~~~DvVI~a~D~~ 128 (212)
T PRK08644 102 HNEKIDED-NIEE-LFKDCDIVVEAFDNA 128 (212)
T ss_pred EeeecCHH-HHHH-HHcCCCEEEECCCCH
Confidence 66655543 3333 367899999887544
No 320
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=71.56 E-value=20 Score=38.56 Aligned_cols=86 Identities=7% Similarity=-0.017 Sum_probs=51.4
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCC-CEEEEEccCCch----HH-------------HHHhhcCCCCcCCCCCceEE
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEK----ER-------------EKKLTDGGLDISGLMNIKLV 702 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g-s~v~IIe~~p~~----er-------------~~~l~~~g~~~~~L~n~~V~ 702 (744)
...+|+|+|.|-+|..+++.|... | .+++|++.+..+ .| .+.+++. + ...-+++.|.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~---GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~r-l-~~INP~~~V~ 103 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALART---GIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAER-I-RQINPECRVT 103 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHc---CCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHH-H-HhHCCCcEEE
Confidence 456899999999999999999864 5 689999965211 11 1111110 0 0112455665
Q ss_pred EEEcCcCCHhhHhcCCCCCcceEEEecCch
Q 004585 703 HREGNAVIRRHLESLPLETFDSMSHWKTRL 732 (744)
Q Consensus 703 ~i~GD~td~~~L~e~~I~~~DavIilTde~ 732 (744)
.++. ..+.+.+++.-..++|.||...|..
T Consensus 104 ~i~~-~i~~e~~~~ll~~~~D~VIdaiD~~ 132 (268)
T PRK15116 104 VVDD-FITPDNVAEYMSAGFSYVIDAIDSV 132 (268)
T ss_pred EEec-ccChhhHHHHhcCCCCEEEEcCCCH
Confidence 5533 3334444443234799998888764
No 321
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=71.50 E-value=14 Score=44.59 Aligned_cols=81 Identities=19% Similarity=0.193 Sum_probs=53.3
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC-CC
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-PL 719 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~-~I 719 (744)
.++|||.|+ |-+|..+++.|.+. ..+.+|..++..+..++.+.+... ...++ +.++.||.+|.+.+.++ ..
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~-g~~~~V~~~d~~~~~~~~~~l~~~----~~~~~--v~~~~~Dl~d~~~~~~~~~~ 78 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRN-YPDYKIVVLDKLDYCSNLKNLNPS----KSSPN--FKFVKGDIASADLVNYLLIT 78 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHh-CCCCEEEEEeCCCccchhhhhhhc----ccCCC--eEEEECCCCChHHHHHHHhh
Confidence 468999997 89999999999753 246788877743211122222110 01123 55689999999888763 34
Q ss_pred CCcceEEEec
Q 004585 720 ETFDSMSHWK 729 (744)
Q Consensus 720 ~~~DavIilT 729 (744)
..+|.||-++
T Consensus 79 ~~~D~ViHlA 88 (668)
T PLN02260 79 EGIDTIMHFA 88 (668)
T ss_pred cCCCEEEECC
Confidence 6789999776
No 322
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=71.39 E-value=8.9 Score=36.48 Aligned_cols=68 Identities=16% Similarity=0.025 Sum_probs=40.9
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~ 720 (744)
..-||-|+|.|++|..|++.|.+. |..|.-+... ..+..++++. .+....+ . .+.+. ++
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~a---g~~v~~v~sr-s~~sa~~a~~------~~~~~~~-------~---~~~~~-~~ 67 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARA---GHEVVGVYSR-SPASAERAAA------FIGAGAI-------L---DLEEI-LR 67 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHT---TSEEEEESSC-HH-HHHHHHC--------TT---------------TTGG-GC
T ss_pred CccEEEEECCCHHHHHHHHHHHHC---CCeEEEEEeC-Cccccccccc------ccccccc-------c---ccccc-cc
Confidence 345999999999999999999874 8888888753 4455555554 2222221 1 12222 56
Q ss_pred CcceEEEec
Q 004585 721 TFDSMSHWK 729 (744)
Q Consensus 721 ~~DavIilT 729 (744)
.+|.+++.+
T Consensus 68 ~aDlv~iav 76 (127)
T PF10727_consen 68 DADLVFIAV 76 (127)
T ss_dssp C-SEEEE-S
T ss_pred cCCEEEEEe
Confidence 789998888
No 323
>PLN02253 xanthoxin dehydrogenase
Probab=71.33 E-value=15 Score=38.63 Aligned_cols=78 Identities=10% Similarity=0.026 Sum_probs=53.7
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCc---
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI--- 458 (744)
..++|.|.+. .|..++++|.+.+ ..|++++++++..++..++.. .+.++.++.+|.++++.++++--
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G------~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~~ 89 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHG------AKVCIVDLQDDLGQNVCDSLG---GEPNVCFFHCDVTVEDDVSRAVDFTV 89 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHhc---CCCceEEEEeecCCHHHHHHHHHHHH
Confidence 4688888765 6889999998653 678888887665555443321 12467889999999988776421
Q ss_pred ---ccccEEEEecC
Q 004585 459 ---SKARAIIVLAS 469 (744)
Q Consensus 459 ---~~A~aVIiltd 469 (744)
.+.|.+|-.+.
T Consensus 90 ~~~g~id~li~~Ag 103 (280)
T PLN02253 90 DKFGTLDIMVNNAG 103 (280)
T ss_pred HHhCCCCEEEECCC
Confidence 25677777664
No 324
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.23 E-value=18 Score=36.98 Aligned_cols=79 Identities=11% Similarity=0.121 Sum_probs=51.7
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhc----
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES---- 716 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e---- 716 (744)
.++++|.|+ |.+|..+++.|.+ .|..|.+++.. +++.+...+. +. . .+..+..+++|.+|.+.+++
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~---~G~~vi~~~r~--~~~~~~~~~~-~~--~-~~~~~~~~~~D~~~~~~~~~~~~~ 75 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQ---KGAKLALIDLN--QEKLEEAVAE-CG--A-LGTEVRGYAANVTDEEDVEATFAQ 75 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHHH-HH--h-cCCceEEEEcCCCCHHHHHHHHHH
Confidence 468999998 8999999999976 48888888764 3333333220 00 0 12334457899999876643
Q ss_pred --CCCCCcceEEEec
Q 004585 717 --LPLETFDSMSHWK 729 (744)
Q Consensus 717 --~~I~~~DavIilT 729 (744)
+.....|.+|..+
T Consensus 76 ~~~~~~~id~vi~~a 90 (253)
T PRK08217 76 IAEDFGQLNGLINNA 90 (253)
T ss_pred HHHHcCCCCEEEECC
Confidence 1234678888765
No 325
>PLN02494 adenosylhomocysteinase
Probab=71.16 E-value=6.3 Score=45.56 Aligned_cols=35 Identities=14% Similarity=0.239 Sum_probs=30.3
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 678 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p 678 (744)
..++++|+|+|.+|..+++.+..+ |..|.+++.+|
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~---Ga~VIV~e~dp 287 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAA---GARVIVTEIDP 287 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCCc
Confidence 457999999999999999999765 88999998754
No 326
>PRK08589 short chain dehydrogenase; Validated
Probab=71.15 E-value=15 Score=38.65 Aligned_cols=78 Identities=14% Similarity=0.057 Sum_probs=52.4
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC----
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (744)
.+++|.|.+. .|..++++|...+ ..|++++++ +..++..+++.. .+.++.++.+|.++++.++++-
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G------~~vi~~~r~-~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~ 77 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEG------AYVLAVDIA-EAVSETVDKIKS--NGGKAKAYHVDISDEQQVKDFASEIK 77 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC------CEEEEEeCc-HHHHHHHHHHHh--cCCeEEEEEeecCCHHHHHHHHHHHH
Confidence 4788999865 6899999998754 578888887 555554443311 1335788899999988776531
Q ss_pred --cccccEEEEecC
Q 004585 458 --VSKARAIIVLAS 469 (744)
Q Consensus 458 --I~~A~aVIiltd 469 (744)
....|.+|-.+.
T Consensus 78 ~~~g~id~li~~Ag 91 (272)
T PRK08589 78 EQFGRVDVLFNNAG 91 (272)
T ss_pred HHcCCcCEEEECCC
Confidence 124577776654
No 327
>PLN02583 cinnamoyl-CoA reductase
Probab=71.12 E-value=16 Score=39.10 Aligned_cols=78 Identities=15% Similarity=0.096 Sum_probs=50.4
Q ss_pred cCeEEEEccc-ccHHHHHHHHHHhcccCCCCeEEEEEcCC--hHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCc
Q 004585 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERD--KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (744)
Q Consensus 382 k~HIII~G~g-~~g~~Ll~eL~~~~~~~~~~~iVVLid~d--~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI 458 (744)
+.+++|.|.+ -.|..++++|...+ +.|+++.++ +...+..+.... ..+.++.++.||.++.+.+.++ +
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G------~~V~~~~R~~~~~~~~~~~~~l~--~~~~~~~~~~~Dl~d~~~~~~~-l 76 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRG------YTVHAAVQKNGETEIEKEIRGLS--CEEERLKVFDVDPLDYHSILDA-L 76 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC------CEEEEEEcCchhhhHHHHHHhcc--cCCCceEEEEecCCCHHHHHHH-H
Confidence 4589999975 46999999998754 567666553 222222222210 0123578899999999998765 4
Q ss_pred ccccEEEEec
Q 004585 459 SKARAIIVLA 468 (744)
Q Consensus 459 ~~A~aVIilt 468 (744)
..+++++-..
T Consensus 77 ~~~d~v~~~~ 86 (297)
T PLN02583 77 KGCSGLFCCF 86 (297)
T ss_pred cCCCEEEEeC
Confidence 5677877543
No 328
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=71.09 E-value=5.1 Score=34.18 Aligned_cols=32 Identities=25% Similarity=0.190 Sum_probs=26.7
Q ss_pred eEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCCh
Q 004585 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (744)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~ 421 (744)
+++|+|.|..+..++..|...+ ..|.+++..+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g------~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG------KEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT------SEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHhC------cEEEEEeccc
Confidence 6899999999999999998754 5778887654
No 329
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.07 E-value=9 Score=39.01 Aligned_cols=78 Identities=10% Similarity=0.116 Sum_probs=51.2
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEE-ccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWML-NEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~II-e~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--- 717 (744)
++++|.|+ |.+|..+++.|.+ .|.++.++ ...+ ++.+.+.+. +. . .+..+..+.+|.+|.+.+++.
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~---~g~~v~~~~~r~~--~~~~~~~~~-~~--~-~~~~~~~~~~D~~~~~~~~~~~~~ 76 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAK---EGAKVVIAYDINE--EAAQELLEE-IK--E-EGGDAIAVKADVSSEEDVENLVEQ 76 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHH---CCCEEEEEcCCCH--HHHHHHHHH-HH--h-cCCeEEEEECCCCCHHHHHHHHHH
Confidence 57999998 7899999999875 48899888 6543 333332220 00 0 123355689999999877552
Q ss_pred ---CCCCcceEEEec
Q 004585 718 ---PLETFDSMSHWK 729 (744)
Q Consensus 718 ---~I~~~DavIilT 729 (744)
.....|.+|...
T Consensus 77 ~~~~~~~id~vi~~a 91 (247)
T PRK05565 77 IVEKFGKIDILVNNA 91 (247)
T ss_pred HHHHhCCCCEEEECC
Confidence 123678888765
No 330
>PRK09242 tropinone reductase; Provisional
Probab=71.06 E-value=10 Score=39.18 Aligned_cols=81 Identities=6% Similarity=0.026 Sum_probs=54.4
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--- 717 (744)
.++++|.|+ |.+|..+++.|.+ .|.+|.++... .++.+.+.+. +. ...++..+.++.+|.+|++.+++.
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~---~G~~v~~~~r~--~~~~~~~~~~-l~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 81 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLG---LGADVLIVARD--ADALAQARDE-LA-EEFPEREVHGLAADVSDDEDRRAILDW 81 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---cCCEEEEEeCC--HHHHHHHHHH-HH-hhCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 468999998 6789999999976 48899998864 3444444320 00 012244666789999998765431
Q ss_pred ---CCCCcceEEEec
Q 004585 718 ---PLETFDSMSHWK 729 (744)
Q Consensus 718 ---~I~~~DavIilT 729 (744)
.....|.+|...
T Consensus 82 ~~~~~g~id~li~~a 96 (257)
T PRK09242 82 VEDHWDGLHILVNNA 96 (257)
T ss_pred HHHHcCCCCEEEECC
Confidence 234678888777
No 331
>PRK06482 short chain dehydrogenase; Provisional
Probab=71.05 E-value=15 Score=38.46 Aligned_cols=75 Identities=12% Similarity=-0.016 Sum_probs=52.5
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC----
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~---- 717 (744)
+++||.|+ |-+|..++++|.+ .|..|.++... +++.+.+.+ .+. ..+..+.+|.+|.+.+++.
T Consensus 3 k~vlVtGasg~IG~~la~~L~~---~g~~v~~~~r~--~~~~~~~~~------~~~-~~~~~~~~D~~~~~~~~~~~~~~ 70 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLA---RGDRVAATVRR--PDALDDLKA------RYG-DRLWVLQLDVTDSAAVRAVVDRA 70 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHH------hcc-CceEEEEccCCCHHHHHHHHHHH
Confidence 57999997 6899999999976 48899888864 355555443 111 1244588999999877652
Q ss_pred --CCCCcceEEEec
Q 004585 718 --PLETFDSMSHWK 729 (744)
Q Consensus 718 --~I~~~DavIilT 729 (744)
.....|.+|-.+
T Consensus 71 ~~~~~~id~vi~~a 84 (276)
T PRK06482 71 FAALGRIDVVVSNA 84 (276)
T ss_pred HHHcCCCCEEEECC
Confidence 235678888765
No 332
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=71.02 E-value=7.2 Score=34.18 Aligned_cols=43 Identities=19% Similarity=0.071 Sum_probs=32.7
Q ss_pred eEEEEcccchHHHHHHHHHhhcCCCCEEEEE-ccCCchHHHHHhhc
Q 004585 644 KILFCGWRRDIDDMIMVLEAFLAPGSELWML-NEVPEKEREKKLTD 688 (744)
Q Consensus 644 rILI~Gwg~~g~~l~~~L~~~~~~gs~v~II-e~~p~~er~~~l~~ 688 (744)
||-|+|.|+.|..|++.|-+.-....+|.++ +. ++|+.+.+.+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r--~~~~~~~~~~ 44 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR--SPEKAAELAK 44 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES--SHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC--cHHHHHHHHH
Confidence 5889999999999999997640022899987 54 5688887765
No 333
>PRK06196 oxidoreductase; Provisional
Probab=70.95 E-value=14 Score=39.78 Aligned_cols=75 Identities=7% Similarity=-0.015 Sum_probs=53.3
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--- 717 (744)
.+.++|.|+ |.+|..++++|.+ .|.+|.++... .++.+.+.+ .+++ +..+.+|.+|.+.+++.
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~---~G~~Vv~~~R~--~~~~~~~~~------~l~~--v~~~~~Dl~d~~~v~~~~~~ 92 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQ---AGAHVIVPARR--PDVAREALA------GIDG--VEVVMLDLADLESVRAFAER 92 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHH------Hhhh--CeEEEccCCCHHHHHHHHHH
Confidence 468999998 6789999999976 48899998864 355554443 2333 34588999999877542
Q ss_pred ---CCCCcceEEEec
Q 004585 718 ---PLETFDSMSHWK 729 (744)
Q Consensus 718 ---~I~~~DavIilT 729 (744)
..+..|.+|..+
T Consensus 93 ~~~~~~~iD~li~nA 107 (315)
T PRK06196 93 FLDSGRRIDILINNA 107 (315)
T ss_pred HHhcCCCCCEEEECC
Confidence 235678888755
No 334
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=70.91 E-value=3.3 Score=45.01 Aligned_cols=42 Identities=14% Similarity=0.113 Sum_probs=31.2
Q ss_pred ceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhh
Q 004585 643 EKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLT 687 (744)
Q Consensus 643 ~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~ 687 (744)
++|.|+|.|.+|..++..|... ....++.+++.++ ++++.++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~-g~~~ei~l~D~~~--~~~~~~a 42 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ-GIADELVLIDINE--EKAEGEA 42 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCc--chhhHhH
Confidence 3799999999999999998653 1125899999754 5555444
No 335
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=70.83 E-value=14 Score=33.14 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=18.5
Q ss_pred eEEEEccc-chHHHHHHHHHhhcCCCCEEEEE
Q 004585 644 KILFCGWR-RDIDDMIMVLEAFLAPGSELWML 674 (744)
Q Consensus 644 rILI~Gwg-~~g~~l~~~L~~~~~~gs~v~II 674 (744)
+|||+|+. +....+-+.++++ |.+....
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~---G~~~~~h 29 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKY---GGKLIHH 29 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHc---CCEEEEE
Confidence 58999984 3344556666664 7777666
No 336
>PRK12828 short chain dehydrogenase; Provisional
Probab=70.76 E-value=10 Score=38.35 Aligned_cols=77 Identities=10% Similarity=0.000 Sum_probs=50.1
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--- 717 (744)
.++++|.|+ |.+|..+++.|.+ .|..|.++..++. +.....+ .+....+..+.+|.+|.+.+++.
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~---~G~~v~~~~r~~~--~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAA---RGARVALIGRGAA--PLSQTLP------GVPADALRIGGIDLVDPQAARRAVDE 75 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHH---CCCeEEEEeCChH--hHHHHHH------HHhhcCceEEEeecCCHHHHHHHHHH
Confidence 468999998 7899999999975 4889999987542 2221111 11111233477999998877542
Q ss_pred ---CCCCcceEEEec
Q 004585 718 ---PLETFDSMSHWK 729 (744)
Q Consensus 718 ---~I~~~DavIilT 729 (744)
.....|.++-.+
T Consensus 76 ~~~~~~~~d~vi~~a 90 (239)
T PRK12828 76 VNRQFGRLDALVNIA 90 (239)
T ss_pred HHHHhCCcCEEEECC
Confidence 124678887765
No 337
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=70.72 E-value=9.8 Score=38.71 Aligned_cols=68 Identities=15% Similarity=0.091 Sum_probs=50.8
Q ss_pred eEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCCc
Q 004585 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETF 722 (744)
Q Consensus 644 rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~~~ 722 (744)
+|-|+|. |+.|..++++.-+ +|-+||-|-.+|.+ +. .+++..+ +++|.-|.+.| ...+.-+
T Consensus 2 KIaiIgAsG~~Gs~i~~EA~~---RGHeVTAivRn~~K-----~~-------~~~~~~i--~q~Difd~~~~-a~~l~g~ 63 (211)
T COG2910 2 KIAIIGASGKAGSRILKEALK---RGHEVTAIVRNASK-----LA-------ARQGVTI--LQKDIFDLTSL-ASDLAGH 63 (211)
T ss_pred eEEEEecCchhHHHHHHHHHh---CCCeeEEEEeChHh-----cc-------cccccee--ecccccChhhh-HhhhcCC
Confidence 4666665 8999999998865 59999999976522 11 2245554 89999999999 4559999
Q ss_pred ceEEEec
Q 004585 723 DSMSHWK 729 (744)
Q Consensus 723 DavIilT 729 (744)
|+||..-
T Consensus 64 DaVIsA~ 70 (211)
T COG2910 64 DAVISAF 70 (211)
T ss_pred ceEEEec
Confidence 9998754
No 338
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=70.70 E-value=2.7 Score=45.16 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=32.2
Q ss_pred ceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHh
Q 004585 643 EKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKL 686 (744)
Q Consensus 643 ~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l 686 (744)
++|.|+|.|..|..++..|.+. |.+|++++.+ +++.+.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~---G~~V~~~d~~--~~~~~~~ 40 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS---GFQTTLVDIK--QEQLESA 40 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC---CCcEEEEeCC--HHHHHHH
Confidence 5899999999999999999764 8999999864 4565554
No 339
>PRK07831 short chain dehydrogenase; Provisional
Probab=70.70 E-value=16 Score=38.00 Aligned_cols=82 Identities=11% Similarity=0.005 Sum_probs=51.6
Q ss_pred CCceEEEEcc-c-chHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC-
Q 004585 641 YPEKILFCGW-R-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL- 717 (744)
Q Consensus 641 ~~~rILI~Gw-g-~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~- 717 (744)
..++++|.|+ | .+|..+++.|.+ .|..|.+++..+ ++.+...+. +. ..+....+..+.+|.+|++.++++
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~---~G~~V~~~~~~~--~~~~~~~~~-~~-~~~~~~~~~~~~~Dl~~~~~~~~~~ 88 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALE---EGARVVISDIHE--RRLGETADE-LA-AELGLGRVEAVVCDVTSEAQVDALI 88 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHH---cCCEEEEEeCCH--HHHHHHHHH-HH-HhcCCceEEEEEccCCCHHHHHHHH
Confidence 3578999998 4 599999999976 488888887543 333322210 00 012222355688999998766531
Q ss_pred -----CCCCcceEEEec
Q 004585 718 -----PLETFDSMSHWK 729 (744)
Q Consensus 718 -----~I~~~DavIilT 729 (744)
..+..|.+|...
T Consensus 89 ~~~~~~~g~id~li~~a 105 (262)
T PRK07831 89 DAAVERLGRLDVLVNNA 105 (262)
T ss_pred HHHHHHcCCCCEEEECC
Confidence 124678887766
No 340
>PRK06057 short chain dehydrogenase; Provisional
Probab=70.67 E-value=12 Score=38.88 Aligned_cols=74 Identities=12% Similarity=0.010 Sum_probs=50.3
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCc---
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI--- 458 (744)
.+++|.|.+. .|..++++|.+.+ ..|++++++++..+...++. ...++.+|.++++.++++--
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G------~~v~~~~r~~~~~~~~~~~~-------~~~~~~~D~~~~~~~~~~~~~~~ 74 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEG------ATVVVGDIDPEAGKAAADEV-------GGLFVPTDVTDEDAVNALFDTAA 74 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHc-------CCcEEEeeCCCHHHHHHHHHHHH
Confidence 5789999854 6899999998653 67888888876665544322 12467788888887665321
Q ss_pred ---ccccEEEEecC
Q 004585 459 ---SKARAIIVLAS 469 (744)
Q Consensus 459 ---~~A~aVIiltd 469 (744)
.+.|.+|-.+.
T Consensus 75 ~~~~~id~vi~~ag 88 (255)
T PRK06057 75 ETYGSVDIAFNNAG 88 (255)
T ss_pred HHcCCCCEEEECCC
Confidence 24577776654
No 341
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.66 E-value=9.4 Score=38.99 Aligned_cols=79 Identities=14% Similarity=0.162 Sum_probs=51.9
Q ss_pred CceEEEEccc-chHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004585 642 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (744)
Q Consensus 642 ~~rILI~Gwg-~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--- 717 (744)
.++++|.|++ .+|..+++.|.+ .|.+|.++...+ ++.+.+.+. + .. ....+..+.+|.++.+.+++.
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~---~G~~Vi~~~r~~--~~~~~~~~~-~--~~-~~~~~~~~~~D~~~~~~~~~~~~~ 77 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAK---EGVNVGLLARTE--ENLKAVAEE-V--EA-YGVKVVIATADVSDYEEVTAAIEQ 77 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHH-H--HH-hCCeEEEEECCCCCHHHHHHHHHH
Confidence 3679999984 789999999975 488999988653 333332210 0 01 122455689999999887552
Q ss_pred ---CCCCcceEEEec
Q 004585 718 ---PLETFDSMSHWK 729 (744)
Q Consensus 718 ---~I~~~DavIilT 729 (744)
.....|.+|..+
T Consensus 78 ~~~~~~~id~vi~~a 92 (239)
T PRK07666 78 LKNELGSIDILINNA 92 (239)
T ss_pred HHHHcCCccEEEEcC
Confidence 124678888765
No 342
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=70.58 E-value=9.2 Score=42.74 Aligned_cols=65 Identities=15% Similarity=0.129 Sum_probs=48.9
Q ss_pred ceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCCc
Q 004585 643 EKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETF 722 (744)
Q Consensus 643 ~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~~~ 722 (744)
++|+|+|+|..|..|+....+. |.++.+++.+++. -+..+++ .++.+|..|.+.|++. ++.+
T Consensus 3 ~~igilG~Gql~~ml~~aa~~l---G~~v~~~d~~~~~-pa~~~ad-------------~~~~~~~~D~~~l~~~-a~~~ 64 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPL---GYKVIVLDPDPDS-PAAQVAD-------------EVIVADYDDVAALREL-AEQC 64 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCEEEEEeCCCCC-chhHhCc-------------eEEecCCCCHHHHHHH-HhcC
Confidence 4799999999999998877764 9999999976533 2333332 1467999999999886 5678
Q ss_pred ceE
Q 004585 723 DSM 725 (744)
Q Consensus 723 Dav 725 (744)
|.+
T Consensus 65 dvi 67 (372)
T PRK06019 65 DVI 67 (372)
T ss_pred CEE
Confidence 865
No 343
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=70.51 E-value=17 Score=32.97 Aligned_cols=68 Identities=15% Similarity=0.114 Sum_probs=45.1
Q ss_pred eEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHh-hHhcCCCCCc
Q 004585 644 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRR-HLESLPLETF 722 (744)
Q Consensus 644 rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~-~L~e~~I~~~ 722 (744)
||.|+|.|..|...+..+.+. .++.++.-+-+ ++.++.+.+.+ ++ ++.. . +|.+ .|+.. +.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~-~~~~~v~~v~d-~~~~~~~~~~~------~~-~~~~---~---~~~~~ll~~~---~~ 63 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRS-SPDFEVVAVCD-PDPERAEAFAE------KY-GIPV---Y---TDLEELLADE---DV 63 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-TTTEEEEEEEC-SSHHHHHHHHH------HT-TSEE---E---SSHHHHHHHT---TE
T ss_pred EEEEECCcHHHHHHHHHHHhc-CCCcEEEEEEe-CCHHHHHHHHH------Hh-cccc---h---hHHHHHHHhh---cC
Confidence 689999999999998888764 35667764443 45677777654 11 2221 2 3444 44434 79
Q ss_pred ceEEEec
Q 004585 723 DSMSHWK 729 (744)
Q Consensus 723 DavIilT 729 (744)
|++++.|
T Consensus 64 D~V~I~t 70 (120)
T PF01408_consen 64 DAVIIAT 70 (120)
T ss_dssp SEEEEES
T ss_pred CEEEEec
Confidence 9999999
No 344
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=70.37 E-value=8.8 Score=41.04 Aligned_cols=65 Identities=20% Similarity=0.166 Sum_probs=45.4
Q ss_pred eEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCcccccE
Q 004585 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (744)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~a 463 (744)
+|.|+|.|..|..++..|...+ +.|.++|.+++.++.+.+. +.. .-...+.+ .+++||.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g------~~V~~~d~~~~~~~~a~~~--------g~~--~~~~~~~~-----~~~~aDl 60 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLG------HTVYGVSRRESTCERAIER--------GLV--DEASTDLS-----LLKDCDL 60 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHC--------CCc--ccccCCHh-----HhcCCCE
Confidence 6899999999999999998653 6799999998877765431 110 00111221 2568999
Q ss_pred EEEecC
Q 004585 464 IIVLAS 469 (744)
Q Consensus 464 VIiltd 469 (744)
||+.+.
T Consensus 61 Vilavp 66 (279)
T PRK07417 61 VILALP 66 (279)
T ss_pred EEEcCC
Confidence 999985
No 345
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=70.26 E-value=8.7 Score=46.35 Aligned_cols=78 Identities=14% Similarity=0.115 Sum_probs=52.6
Q ss_pred eecCeEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCc
Q 004585 380 IEKNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (744)
Q Consensus 380 ~~k~HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI 458 (744)
...++|+|.|. |-.|..++++|...+ ++.|+.++++........ ...++.++.||.++.+.+.+.-+
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~-----g~~V~~l~r~~~~~~~~~-------~~~~~~~~~gDl~d~~~~l~~~l 380 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDD-----NYEVYGLDIGSDAISRFL-------GHPRFHFVEGDISIHSEWIEYHI 380 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCC-----CcEEEEEeCCchhhhhhc-------CCCceEEEeccccCcHHHHHHHh
Confidence 35678999996 557999999998642 367888887664332211 12357889999998665433235
Q ss_pred ccccEEEEecC
Q 004585 459 SKARAIIVLAS 469 (744)
Q Consensus 459 ~~A~aVIiltd 469 (744)
+++|+||=++.
T Consensus 381 ~~~D~ViHlAa 391 (660)
T PRK08125 381 KKCDVVLPLVA 391 (660)
T ss_pred cCCCEEEECcc
Confidence 67899886554
No 346
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=70.14 E-value=9.9 Score=41.54 Aligned_cols=77 Identities=13% Similarity=0.094 Sum_probs=47.8
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEE-EEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELW-MLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~-IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~ 720 (744)
++|+|.|+ |-+|..+++.|.+ .|.++. +++..+.......+.. ..++..+.++.+|.+|.+.+++. ++
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~---~g~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~-~~ 71 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIIN---ETSDAVVVVDKLTYAGNLMSLAP------VAQSERFAFEKVDICDRAELARV-FT 71 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHH---cCCCEEEEEecCccccchhhhhh------cccCCceEEEECCCcChHHHHHH-Hh
Confidence 47999998 7799999999976 365544 4443211111111111 01122355678999999888764 33
Q ss_pred --CcceEEEec
Q 004585 721 --TFDSMSHWK 729 (744)
Q Consensus 721 --~~DavIilT 729 (744)
..|.||-++
T Consensus 72 ~~~~D~Vih~A 82 (355)
T PRK10217 72 EHQPDCVMHLA 82 (355)
T ss_pred hcCCCEEEECC
Confidence 479988887
No 347
>PRK06953 short chain dehydrogenase; Provisional
Probab=70.08 E-value=23 Score=35.84 Aligned_cols=72 Identities=17% Similarity=0.112 Sum_probs=50.0
Q ss_pred eEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhcc--Cc--
Q 004585 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--SV-- 458 (744)
Q Consensus 384 HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA--gI-- 458 (744)
.++|.|.+. .|..++++|...+ ..|++++++++..+++.. .++.++.+|.++.+.++++ .+
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~G------~~v~~~~r~~~~~~~~~~--------~~~~~~~~D~~~~~~v~~~~~~~~~ 68 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRADG------WRVIATARDAAALAALQA--------LGAEALALDVADPASVAGLAWKLDG 68 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhCC------CEEEEEECCHHHHHHHHh--------ccceEEEecCCCHHHHHHHHHHhcC
Confidence 578888644 6889999997543 578888888766554321 2456789999999888774 12
Q ss_pred ccccEEEEecC
Q 004585 459 SKARAIIVLAS 469 (744)
Q Consensus 459 ~~A~aVIiltd 469 (744)
.+.|.+|-++.
T Consensus 69 ~~~d~vi~~ag 79 (222)
T PRK06953 69 EALDAAVYVAG 79 (222)
T ss_pred CCCCEEEECCC
Confidence 24677776654
No 348
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=70.07 E-value=38 Score=36.61 Aligned_cols=123 Identities=15% Similarity=0.244 Sum_probs=69.5
Q ss_pred cCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCcccc
Q 004585 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (744)
Q Consensus 382 k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (744)
..+++|+|+|..|..+++.|...+ ..|.+.+++++..+...+ .+.. +...++|.++ +.++
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G------~~V~v~~R~~~~~~~~~~--------~g~~-----~~~~~~l~~~-l~~a 210 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALG------ARVFVGARSSADLARITE--------MGLI-----PFPLNKLEEK-VAEI 210 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHH--------CCCe-----eecHHHHHHH-hccC
Confidence 358999999999999999998643 578888988866554321 1111 1223445443 5689
Q ss_pred cEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCccEEEEe-cCCCC--HHHHHHcCCCeee-----EeccHHHHHHHHH
Q 004585 462 RAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEM-SDLDN--EPLVKLVGGELIE-----TVVAHDVIGRLMI 533 (744)
Q Consensus 462 ~aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv-~d~e~--~~~lk~~Gad~Ve-----~Vis~el~a~lLa 533 (744)
|.||..++. . +...-.+..+.++ .++.-+ .++.. -+..++.|+..+- -.+.+...+.+++
T Consensus 211 DiVint~P~------~---ii~~~~l~~~k~~---aliIDlas~Pg~tdf~~Ak~~G~~a~~~~glPg~~ap~ta~~i~~ 278 (287)
T TIGR02853 211 DIVINTIPA------L---VLTADVLSKLPKH---AVIIDLASKPGGTDFEYAKKRGIKALLAPGLPGIVAPKTAGKILA 278 (287)
T ss_pred CEEEECCCh------H---HhCHHHHhcCCCC---eEEEEeCcCCCCCCHHHHHHCCCEEEEeCCCCcccCchhHHHHHH
Confidence 999988742 1 1111122333332 234333 33322 2567778876420 0123555677776
Q ss_pred HHh
Q 004585 534 QCA 536 (744)
Q Consensus 534 q~~ 536 (744)
+.+
T Consensus 279 ~~~ 281 (287)
T TIGR02853 279 NVL 281 (287)
T ss_pred HHH
Confidence 644
No 349
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=70.06 E-value=15 Score=37.87 Aligned_cols=79 Identities=8% Similarity=0.053 Sum_probs=52.3
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--- 717 (744)
.+++||.|+ |-+|..+++.|.+ .|.+|.++...+ ++.+.+.+. + ... +..+..+.+|.+|.+.+++.
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~---~G~~v~~~~r~~--~~~~~~~~~-~--~~~-~~~~~~~~~Dl~~~~~~~~~~~~ 77 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELAR---AGAAVAIADLNQ--DGANAVADE-I--NKA-GGKAIGVAMDVTNEDAVNAGIDK 77 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---CCCeEEEEeCCh--HHHHHHHHH-H--Hhc-CceEEEEECCCCCHHHHHHHHHH
Confidence 368999998 7889999999976 488999888654 232222210 0 011 23455689999999988642
Q ss_pred ---CCCCcceEEEec
Q 004585 718 ---PLETFDSMSHWK 729 (744)
Q Consensus 718 ---~I~~~DavIilT 729 (744)
.....|.+|-.+
T Consensus 78 ~~~~~~~~d~vi~~a 92 (262)
T PRK13394 78 VAERFGSVDILVSNA 92 (262)
T ss_pred HHHHcCCCCEEEECC
Confidence 123578887766
No 350
>PRK05693 short chain dehydrogenase; Provisional
Probab=70.06 E-value=13 Score=38.91 Aligned_cols=74 Identities=20% Similarity=0.075 Sum_probs=52.4
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhcc-----
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA----- 456 (744)
+.++|.|.+. .|..++++|...+ ..|++++++++..+.... .++.++.+|.++++.++++
T Consensus 2 k~vlItGasggiG~~la~~l~~~G------~~V~~~~r~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~~~~ 67 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAG------YEVWATARKAEDVEALAA--------AGFTAVQLDVNDGAALARLAEELE 67 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHH--------CCCeEEEeeCCCHHHHHHHHHHHH
Confidence 3688998755 6889999997643 678888888776655422 2466788999998887654
Q ss_pred -CcccccEEEEecCC
Q 004585 457 -SVSKARAIIVLASD 470 (744)
Q Consensus 457 -gI~~A~aVIiltdd 470 (744)
...+.|.+|-.+..
T Consensus 68 ~~~~~id~vi~~ag~ 82 (274)
T PRK05693 68 AEHGGLDVLINNAGY 82 (274)
T ss_pred HhcCCCCEEEECCCC
Confidence 12356888877753
No 351
>PRK07677 short chain dehydrogenase; Provisional
Probab=69.96 E-value=18 Score=37.43 Aligned_cols=78 Identities=23% Similarity=0.227 Sum_probs=52.3
Q ss_pred eEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC-----
Q 004585 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS----- 457 (744)
Q Consensus 384 HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg----- 457 (744)
.++|.|.+. .|..++++|.+.+ ..|++++++++..++..++... .+.++.++.+|.++++.++++-
T Consensus 3 ~~lItG~s~giG~~ia~~l~~~G------~~Vi~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (252)
T PRK07677 3 VVIITGGSSGMGKAMAKRFAEEG------ANVVITGRTKEKLEEAKLEIEQ--FPGQVLTVQMDVRNPEDVQKMVEQIDE 74 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 578888766 6889999998643 5788888887666554433210 1246778999999988876631
Q ss_pred -cccccEEEEecC
Q 004585 458 -VSKARAIIVLAS 469 (744)
Q Consensus 458 -I~~A~aVIiltd 469 (744)
....|.+|-.+.
T Consensus 75 ~~~~id~lI~~ag 87 (252)
T PRK07677 75 KFGRIDALINNAA 87 (252)
T ss_pred HhCCccEEEECCC
Confidence 124577776653
No 352
>PRK06197 short chain dehydrogenase; Provisional
Probab=69.91 E-value=14 Score=39.51 Aligned_cols=82 Identities=9% Similarity=0.001 Sum_probs=53.5
Q ss_pred CCceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC--
Q 004585 641 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-- 717 (744)
Q Consensus 641 ~~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~-- 717 (744)
..+.++|.|+ |.+|..+++.|.+. |.+|.++..+ .++.+...+. +. ....+..+..+.+|.+|.+.++++
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~---G~~vi~~~r~--~~~~~~~~~~-l~-~~~~~~~~~~~~~Dl~d~~~v~~~~~ 87 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAK---GAHVVLAVRN--LDKGKAAAAR-IT-AATPGADVTLQELDLTSLASVRAAAD 87 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHC---CCEEEEEeCC--HHHHHHHHHH-HH-HhCCCCceEEEECCCCCHHHHHHHHH
Confidence 3468999998 67999999999764 8898888764 3333322110 00 012234455688999999877642
Q ss_pred ----CCCCcceEEEec
Q 004585 718 ----PLETFDSMSHWK 729 (744)
Q Consensus 718 ----~I~~~DavIilT 729 (744)
.....|.+|..+
T Consensus 88 ~~~~~~~~iD~li~nA 103 (306)
T PRK06197 88 ALRAAYPRIDLLINNA 103 (306)
T ss_pred HHHhhCCCCCEEEECC
Confidence 234678888765
No 353
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=69.85 E-value=8.6 Score=41.21 Aligned_cols=66 Identities=14% Similarity=0.122 Sum_probs=52.3
Q ss_pred CCCceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCC---CceEEEEEcCcCCHhhHh
Q 004585 640 KYPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM---NIKLVHREGNAVIRRHLE 715 (744)
Q Consensus 640 ~~~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~---n~~V~~i~GD~td~~~L~ 715 (744)
...++++|-|. +.+|..++++|.+ .|.++.++.. +++|-+.|++ +++ .+.+.++.-|.+|.+.++
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~---~g~~liLvaR--~~~kL~~la~------~l~~~~~v~v~vi~~DLs~~~~~~ 72 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLAR---RGYNLILVAR--REDKLEALAK------ELEDKTGVEVEVIPADLSDPEALE 72 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHH---CCCEEEEEeC--cHHHHHHHHH------HHHHhhCceEEEEECcCCChhHHH
Confidence 34678999999 5789999999987 4999999996 5788777775 333 355777999999988877
Q ss_pred c
Q 004585 716 S 716 (744)
Q Consensus 716 e 716 (744)
+
T Consensus 73 ~ 73 (265)
T COG0300 73 R 73 (265)
T ss_pred H
Confidence 5
No 354
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=69.83 E-value=15 Score=38.48 Aligned_cols=80 Identities=21% Similarity=0.249 Sum_probs=54.1
Q ss_pred cCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC---
Q 004585 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (744)
Q Consensus 382 k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (744)
...++|.|.+. .|..++++|...+ ..|++++++++..+...+++.. .+.++.++.+|.++++.+.++-
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G------~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~v~~~~~~~ 81 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAG------AKVAILDRNQEKAEAVVAEIKA--AGGEALAVKADVLDKESLEQARQQI 81 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHH
Confidence 35688888754 6899999998643 5788888887666555443211 1345788899999988776531
Q ss_pred ---cccccEEEEecC
Q 004585 458 ---VSKARAIIVLAS 469 (744)
Q Consensus 458 ---I~~A~aVIiltd 469 (744)
..+.|.+|-.+.
T Consensus 82 ~~~~g~id~li~~ag 96 (278)
T PRK08277 82 LEDFGPCDILINGAG 96 (278)
T ss_pred HHHcCCCCEEEECCC
Confidence 235677777664
No 355
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=69.66 E-value=6.2 Score=43.81 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=31.5
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCc
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPE 679 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~ 679 (744)
.-+.++|||+|..|.-.++.+... |..|.+-|.+|.
T Consensus 208 aGK~vVV~GYG~vGrG~A~~~rg~---GA~ViVtEvDPI 243 (420)
T COG0499 208 AGKNVVVAGYGWVGRGIAMRLRGM---GARVIVTEVDPI 243 (420)
T ss_pred cCceEEEecccccchHHHHHhhcC---CCeEEEEecCch
Confidence 457899999999999999999874 999999998763
No 356
>PRK09135 pteridine reductase; Provisional
Probab=69.63 E-value=14 Score=37.68 Aligned_cols=80 Identities=16% Similarity=0.134 Sum_probs=51.5
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC----
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~---- 717 (744)
++++|.|+ |-+|..+++.|.+ .|.+|.++.... ++..+.+.+. + .......+.++.+|.+|++.++++
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~---~g~~v~~~~r~~-~~~~~~~~~~-~--~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 79 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHA---AGYRVAIHYHRS-AAEADALAAE-L--NALRPGSAAALQADLLDPDALPELVAAC 79 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHH---CCCEEEEEcCCC-HHHHHHHHHH-H--HhhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 68999998 6789999999976 489999988532 2233332210 0 011112345688999999877642
Q ss_pred --CCCCcceEEEec
Q 004585 718 --PLETFDSMSHWK 729 (744)
Q Consensus 718 --~I~~~DavIilT 729 (744)
.....|.++-.+
T Consensus 80 ~~~~~~~d~vi~~a 93 (249)
T PRK09135 80 VAAFGRLDALVNNA 93 (249)
T ss_pred HHHcCCCCEEEECC
Confidence 123568888766
No 357
>PRK08264 short chain dehydrogenase; Validated
Probab=69.52 E-value=17 Score=37.04 Aligned_cols=72 Identities=13% Similarity=0.070 Sum_probs=49.7
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCC-EEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC--
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGS-ELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-- 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs-~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~-- 717 (744)
.++++|.|+ |.+|..+++.|.+. |. .|.++...+ ++.+. . ...+..+.+|.+|.+.+++.
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~---G~~~V~~~~r~~--~~~~~--~---------~~~~~~~~~D~~~~~~~~~~~~ 69 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLAR---GAAKVYAAARDP--ESVTD--L---------GPRVVPLQLDVTDPASVAAAAE 69 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC---CcccEEEEecCh--hhhhh--c---------CCceEEEEecCCCHHHHHHHHH
Confidence 468999997 78999999999764 87 888888643 22221 1 11244588999998887652
Q ss_pred CCCCcceEEEec
Q 004585 718 PLETFDSMSHWK 729 (744)
Q Consensus 718 ~I~~~DavIilT 729 (744)
.....|.+|...
T Consensus 70 ~~~~id~vi~~a 81 (238)
T PRK08264 70 AASDVTILVNNA 81 (238)
T ss_pred hcCCCCEEEECC
Confidence 234578887665
No 358
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=69.50 E-value=12 Score=42.10 Aligned_cols=85 Identities=13% Similarity=0.130 Sum_probs=52.3
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCC-EEEEEccCCc-----------------hHHHHHhhcCCCCcCCCCCceEE
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPE-----------------KEREKKLTDGGLDISGLMNIKLV 702 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs-~v~IIe~~p~-----------------~er~~~l~~~g~~~~~L~n~~V~ 702 (744)
...+|+|+|.|..|..+++.|... |. ++++++.+.- +.|.+.+++. +. ..-+++.+.
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~---Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~-l~-~~np~v~v~ 208 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAA---GVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQR-LA-ALNPDVQVE 208 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHH-HH-HHCCCCEEE
Confidence 345899999999999999999764 54 7999986410 1233333320 00 012456665
Q ss_pred EEEcCcCCHhhHhcCCCCCcceEEEecCch
Q 004585 703 HREGNAVIRRHLESLPLETFDSMSHWKTRL 732 (744)
Q Consensus 703 ~i~GD~td~~~L~e~~I~~~DavIilTde~ 732 (744)
......+.. .+++. ++++|.||..||..
T Consensus 209 ~~~~~~~~~-~~~~~-~~~~D~Vv~~~d~~ 236 (376)
T PRK08762 209 AVQERVTSD-NVEAL-LQDVDVVVDGADNF 236 (376)
T ss_pred EEeccCChH-HHHHH-HhCCCEEEECCCCH
Confidence 555554432 33332 56799999998754
No 359
>PRK05993 short chain dehydrogenase; Provisional
Probab=69.44 E-value=11 Score=39.79 Aligned_cols=72 Identities=14% Similarity=0.060 Sum_probs=50.9
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC--C-
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--P- 718 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--~- 718 (744)
+.++|.|+ |.+|..+++.|.+ .|.+|.++... .+..+.+.+. + +..+.+|.+|.+.++++ .
T Consensus 5 k~vlItGasggiG~~la~~l~~---~G~~Vi~~~r~--~~~~~~l~~~--------~--~~~~~~Dl~d~~~~~~~~~~~ 69 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQS---DGWRVFATCRK--EEDVAALEAE--------G--LEAFQLDYAEPESIAALVAQV 69 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHH---CCCEEEEEECC--HHHHHHHHHC--------C--ceEEEccCCCHHHHHHHHHHH
Confidence 57999999 7899999999976 48999998864 3555555431 2 33578999998866542 1
Q ss_pred ----CCCcceEEEec
Q 004585 719 ----LETFDSMSHWK 729 (744)
Q Consensus 719 ----I~~~DavIilT 729 (744)
-+..|.+|..+
T Consensus 70 ~~~~~g~id~li~~A 84 (277)
T PRK05993 70 LELSGGRLDALFNNG 84 (277)
T ss_pred HHHcCCCccEEEECC
Confidence 13568887654
No 360
>PRK07035 short chain dehydrogenase; Provisional
Probab=69.44 E-value=18 Score=37.20 Aligned_cols=66 Identities=14% Similarity=0.067 Sum_probs=45.0
Q ss_pred cCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhc
Q 004585 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (744)
Q Consensus 382 k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~r 455 (744)
.+.++|.|.+. .|..++++|...+ ..|++++++++..+...+++.. .+.++.++..|..+.+.+++
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G------~~Vi~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~ 74 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQG------AHVIVSSRKLDGCQAVADAIVA--AGGKAEALACHIGEMEQIDA 74 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEEcCCCCHHHHHH
Confidence 35688998766 5889999998653 5788888887766655443211 12346677788888777654
No 361
>PRK05875 short chain dehydrogenase; Provisional
Probab=69.43 E-value=12 Score=39.25 Aligned_cols=80 Identities=10% Similarity=0.093 Sum_probs=51.6
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCC-CceEEEEEcCcCCHhhHhcC--
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM-NIKLVHREGNAVIRRHLESL-- 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~-n~~V~~i~GD~td~~~L~e~-- 717 (744)
.++++|.|. |.+|..+++.|.+ .|.+|.++...+ ++.+.+.+. +. ... ...+..+.+|.+|++.+++.
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~---~G~~V~~~~r~~--~~~~~~~~~-l~--~~~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVA---AGAAVMIVGRNP--DKLAAAAEE-IE--ALKGAGAVRYEPADVTDEDQVARAVD 78 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH---CCCeEEEEeCCH--HHHHHHHHH-HH--hccCCCceEEEEcCCCCHHHHHHHHH
Confidence 468999998 7899999999976 488999988643 332222210 00 010 12344578999999877653
Q ss_pred ----CCCCcceEEEec
Q 004585 718 ----PLETFDSMSHWK 729 (744)
Q Consensus 718 ----~I~~~DavIilT 729 (744)
.....|.+|..+
T Consensus 79 ~~~~~~~~~d~li~~a 94 (276)
T PRK05875 79 AATAWHGRLHGVVHCA 94 (276)
T ss_pred HHHHHcCCCCEEEECC
Confidence 123578888765
No 362
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=69.29 E-value=15 Score=38.05 Aligned_cols=77 Identities=12% Similarity=0.176 Sum_probs=51.4
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--- 717 (744)
.++++|.|+ +.+|..+++.|.+ .|.+|.++.....++-.+.+.+ + +..+..+.+|.+|++.+++.
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~---~G~~vv~~~~~~~~~~~~~~~~-------~-~~~~~~~~~Dl~~~~~~~~~~~~ 76 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAK---AGADIVGVGVAEAPETQAQVEA-------L-GRKFHFITADLIQQKDIDSIVSQ 76 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEecCchHHHHHHHHHH-------c-CCeEEEEEeCCCCHHHHHHHHHH
Confidence 468999998 4689999999986 4999988875432222233322 1 22355689999999887653
Q ss_pred ---CCCCcceEEEec
Q 004585 718 ---PLETFDSMSHWK 729 (744)
Q Consensus 718 ---~I~~~DavIilT 729 (744)
..+..|.+|...
T Consensus 77 ~~~~~g~iD~lv~~a 91 (251)
T PRK12481 77 AVEVMGHIDILINNA 91 (251)
T ss_pred HHHHcCCCCEEEECC
Confidence 134578877654
No 363
>PLN02253 xanthoxin dehydrogenase
Probab=69.26 E-value=14 Score=38.77 Aligned_cols=77 Identities=10% Similarity=0.152 Sum_probs=51.9
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCC-CceEEEEEcCcCCHhhHhcC--
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM-NIKLVHREGNAVIRRHLESL-- 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~-n~~V~~i~GD~td~~~L~e~-- 717 (744)
.++++|.|+ |.+|..+++.|.+ .|.+|.+++..+ +..+.+.+ .+. +..+..+++|.+|.+.+++.
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~---~G~~v~~~~~~~--~~~~~~~~------~~~~~~~~~~~~~Dl~d~~~~~~~~~ 86 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHK---HGAKVCIVDLQD--DLGQNVCD------SLGGEPNVCFFHCDVTVEDDVSRAVD 86 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---cCCEEEEEeCCH--HHHHHHHH------HhcCCCceEEEEeecCCHHHHHHHHH
Confidence 467999998 5689999999976 489999987642 33333322 111 12355689999999887653
Q ss_pred ----CCCCcceEEEec
Q 004585 718 ----PLETFDSMSHWK 729 (744)
Q Consensus 718 ----~I~~~DavIilT 729 (744)
..+..|.+|-.+
T Consensus 87 ~~~~~~g~id~li~~A 102 (280)
T PLN02253 87 FTVDKFGTLDIMVNNA 102 (280)
T ss_pred HHHHHhCCCCEEEECC
Confidence 124678888765
No 364
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=69.19 E-value=17 Score=37.22 Aligned_cols=78 Identities=17% Similarity=0.083 Sum_probs=52.4
Q ss_pred eEEEEccc-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhcc------
Q 004585 384 HILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV------ 456 (744)
Q Consensus 384 HIII~G~g-~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA------ 456 (744)
.++|.|.+ ..|..++++|.+.+ ..|++++++++..+.+.+... ..+.++.++.+|..+++.++++
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g------~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAG------ANVVVNDLGEAGAEAAAKVAT--DAGGSVIYLVADVTKEDEIADMIAAAAA 74 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHH--hcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 58888864 46999999998643 578888888766655543321 1134688899999999865432
Q ss_pred CcccccEEEEecC
Q 004585 457 SVSKARAIIVLAS 469 (744)
Q Consensus 457 gI~~A~aVIiltd 469 (744)
.....|.+|-...
T Consensus 75 ~~~~~d~vi~~a~ 87 (255)
T TIGR01963 75 EFGGLDILVNNAG 87 (255)
T ss_pred hcCCCCEEEECCC
Confidence 1234677776654
No 365
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=69.19 E-value=7.9 Score=38.59 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=31.8
Q ss_pred CCCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCc
Q 004585 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPE 679 (744)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~ 679 (744)
-..++|.|+|.|++|..+++.|..+ |.+|...+..+.
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~f---G~~V~~~d~~~~ 70 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAF---GMRVIGYDRSPK 70 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHT---T-EEEEEESSCH
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecC---CceeEEecccCC
Confidence 3567999999999999999999986 999999998654
No 366
>PRK04148 hypothetical protein; Provisional
Probab=69.18 E-value=10 Score=36.53 Aligned_cols=56 Identities=14% Similarity=0.019 Sum_probs=41.5
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhh
Q 004585 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRH 713 (744)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~ 713 (744)
.++++.+|-| .|..+++.|.+. |.+|+.++.+| +..+...+.+ +..+.+|..+.+.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~---G~~ViaIDi~~--~aV~~a~~~~----------~~~v~dDlf~p~~ 72 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKES---GFDVIVIDINE--KAVEKAKKLG----------LNAFVDDLFNPNL 72 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHC---CCEEEEEECCH--HHHHHHHHhC----------CeEEECcCCCCCH
Confidence 4689999999 888899999864 99999999864 5555554421 2347788876653
No 367
>PRK08263 short chain dehydrogenase; Provisional
Probab=69.08 E-value=16 Score=38.34 Aligned_cols=76 Identities=14% Similarity=-0.011 Sum_probs=53.5
Q ss_pred eEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhcc------
Q 004585 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV------ 456 (744)
Q Consensus 384 HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA------ 456 (744)
.++|.|.+. .|..++++|.+.+ +.|++++++++..+...+.. +..+.++.+|.++++.++++
T Consensus 5 ~vlItGasg~iG~~~a~~l~~~g------~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (275)
T PRK08263 5 VWFITGASRGFGRAWTEAALERG------DRVVATARDTATLADLAEKY-----GDRLLPLALDVTDRAAVFAAVETAVE 73 (275)
T ss_pred EEEEeCCCChHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHhc-----cCCeeEEEccCCCHHHHHHHHHHHHH
Confidence 578888655 6889999997643 67888888887766554321 23577889999999887653
Q ss_pred CcccccEEEEecCC
Q 004585 457 SVSKARAIIVLASD 470 (744)
Q Consensus 457 gI~~A~aVIiltdd 470 (744)
.....|++|-++..
T Consensus 74 ~~~~~d~vi~~ag~ 87 (275)
T PRK08263 74 HFGRLDIVVNNAGY 87 (275)
T ss_pred HcCCCCEEEECCCC
Confidence 11345788877754
No 368
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=69.03 E-value=12 Score=37.91 Aligned_cols=70 Identities=26% Similarity=0.285 Sum_probs=49.2
Q ss_pred EEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC--C
Q 004585 645 ILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE--T 721 (744)
Q Consensus 645 ILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~--~ 721 (744)
|||.|+ |-+|..++++|.+ .|..|+.+...+..+...... . + +.+..+|.+|.+.++++ ++ .
T Consensus 1 IlI~GatG~iG~~l~~~l~~---~g~~v~~~~~~~~~~~~~~~~--------~-~--~~~~~~dl~~~~~~~~~-~~~~~ 65 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLK---KGHEVIVLSRSSNSESFEEKK--------L-N--VEFVIGDLTDKEQLEKL-LEKAN 65 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHH---TTTEEEEEESCSTGGHHHHHH--------T-T--EEEEESETTSHHHHHHH-HHHHT
T ss_pred EEEEccCCHHHHHHHHHHHH---cCCcccccccccccccccccc--------c-e--EEEEEeecccccccccc-ccccC
Confidence 789997 7899999999986 488877766543322111110 1 3 55689999999999875 33 4
Q ss_pred cceEEEec
Q 004585 722 FDSMSHWK 729 (744)
Q Consensus 722 ~DavIilT 729 (744)
+|.|+-+.
T Consensus 66 ~d~vi~~a 73 (236)
T PF01370_consen 66 IDVVIHLA 73 (236)
T ss_dssp ESEEEEEB
T ss_pred ceEEEEee
Confidence 59999887
No 369
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=69.00 E-value=10 Score=43.25 Aligned_cols=72 Identities=10% Similarity=0.018 Sum_probs=48.1
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~ 720 (744)
.-++|+|+|+|.+|..+++.+... |.+|.+++.+ +.|.+...+.| ..+ . + .++. +.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~---Ga~ViV~d~d--~~R~~~A~~~G--------~~~--~--~--~~e~-----v~ 256 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQ---GARVIVTEVD--PICALQAAMEG--------YEV--M--T--MEEA-----VK 256 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEECC--hhhHHHHHhcC--------CEE--c--c--HHHH-----Hc
Confidence 457999999999999999999764 8889988864 46655544322 221 1 0 1122 34
Q ss_pred CcceEEEecCchhhhh
Q 004585 721 TFDSMSHWKTRLCILT 736 (744)
Q Consensus 721 ~~DavIilTde~ni~t 736 (744)
.+|.|+..|..-.++.
T Consensus 257 ~aDVVI~atG~~~~i~ 272 (413)
T cd00401 257 EGDIFVTTTGNKDIIT 272 (413)
T ss_pred CCCEEEECCCCHHHHH
Confidence 6798888885555554
No 370
>PRK08017 oxidoreductase; Provisional
Probab=69.00 E-value=11 Score=38.72 Aligned_cols=59 Identities=8% Similarity=0.001 Sum_probs=42.6
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhc
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES 716 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e 716 (744)
++++|.|+ |.+|..+++.|.+ .|.+|.++..+ .++.+.+.+. + +..+.+|.+|.+.++.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~---~g~~v~~~~r~--~~~~~~~~~~--------~--~~~~~~D~~~~~~~~~ 62 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKR---RGYRVLAACRK--PDDVARMNSL--------G--FTGILLDLDDPESVER 62 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCC--HHHhHHHHhC--------C--CeEEEeecCCHHHHHH
Confidence 47999999 8999999999975 48889888764 3444444321 2 3347899999877654
No 371
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=68.99 E-value=7.7 Score=45.50 Aligned_cols=53 Identities=19% Similarity=0.357 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHhhhcCCCCCC-CCCccChhhhhHHHHHHHHHHHHHHHHHHHH
Q 004585 312 SSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDA 364 (744)
Q Consensus 312 ~s~~dA~y~~~~tltTvGygd~-~~t~~gRi~~v~lil~Gi~i~a~lig~It~~ 364 (744)
.++.+|.||+|-.+...|-|.. |.+...|+++++|.=+.+++++..++-++..
T Consensus 612 lnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAF 665 (993)
T KOG4440|consen 612 LNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAF 665 (993)
T ss_pred cchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhh
Confidence 6899999999999999999987 6788899999998877777776666655544
No 372
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.93 E-value=16 Score=37.99 Aligned_cols=62 Identities=10% Similarity=0.154 Sum_probs=41.8
Q ss_pred CeEEEEccc---ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhc
Q 004585 383 NHILILGWS---DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (744)
Q Consensus 383 ~HIII~G~g---~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~r 455 (744)
.+++|.|.+ ..|..++++|.+.+ ..|+++.++. +.++.+++. ...++.++..|.++++..++
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G------~~Vi~~~r~~-~~~~~~~~~----~~~~~~~~~~Dl~~~~~v~~ 72 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQG------ATVIYTYQND-RMKKSLQKL----VDEEDLLVECDVASDESIER 72 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCC------CEEEEecCch-HHHHHHHhh----ccCceeEEeCCCCCHHHHHH
Confidence 478888986 58999999998754 5678887763 333333322 12346677788888777655
No 373
>PRK07775 short chain dehydrogenase; Provisional
Probab=68.61 E-value=18 Score=38.06 Aligned_cols=82 Identities=20% Similarity=0.163 Sum_probs=54.1
Q ss_pred ecCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC--
Q 004585 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (744)
Q Consensus 381 ~k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg-- 457 (744)
.+.+++|.|.+. .|..++++|...+ ..|+++.++++..++..++.. ..+.++.++.+|.++++.++++-
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L~~~G------~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~ 80 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIELAAAG------FPVALGARRVEKCEELVDKIR--ADGGEAVAFPLDVTDPDSVKSFVAQ 80 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHH--hcCCeEEEEECCCCCHHHHHHHHHH
Confidence 345899999754 6899999998643 567777776655544433221 01235778899999999887531
Q ss_pred ----cccccEEEEecCC
Q 004585 458 ----VSKARAIIVLASD 470 (744)
Q Consensus 458 ----I~~A~aVIiltdd 470 (744)
....|.+|-.+..
T Consensus 81 ~~~~~~~id~vi~~Ag~ 97 (274)
T PRK07775 81 AEEALGEIEVLVSGAGD 97 (274)
T ss_pred HHHhcCCCCEEEECCCc
Confidence 2356777777654
No 374
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=68.51 E-value=10 Score=38.96 Aligned_cols=76 Identities=11% Similarity=0.052 Sum_probs=52.6
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCC--CCceEEEEEcCcCCHhhHhcC--
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGL--MNIKLVHREGNAVIRRHLESL-- 717 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L--~n~~V~~i~GD~td~~~L~e~-- 717 (744)
++++|.|+ |.+|..+++.|.+ .|.+|.++...+ ++.+.+.+ .+ .+..+..+.+|.+|++.++++
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~---~g~~v~~~~r~~--~~~~~~~~------~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 73 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAK---EGAKVVIADLND--EAAAAAAE------ALQKAGGKAIGVAMDVTDEEAINAGID 73 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHH---CCCeEEEEeCCH--HHHHHHHH------HHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 68999997 7899999999975 489999998653 33333322 11 123355688999999987552
Q ss_pred ----CCCCcceEEEec
Q 004585 718 ----PLETFDSMSHWK 729 (744)
Q Consensus 718 ----~I~~~DavIilT 729 (744)
..+..|.+|..+
T Consensus 74 ~~~~~~~~~d~vi~~a 89 (258)
T PRK12429 74 YAVETFGGVDILVNNA 89 (258)
T ss_pred HHHHHcCCCCEEEECC
Confidence 124678888766
No 375
>PRK09186 flagellin modification protein A; Provisional
Probab=68.51 E-value=12 Score=38.43 Aligned_cols=81 Identities=17% Similarity=0.122 Sum_probs=51.5
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--- 717 (744)
.++++|.|+ |.+|..+++.|.+ .|.+|.++... .++.+.+.+ .+.. .+..-.+..+.+|.+|++.++++
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~---~g~~v~~~~r~--~~~~~~~~~-~l~~-~~~~~~~~~~~~Dl~d~~~~~~~~~~ 76 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILE---AGGIVIAADID--KEALNELLE-SLGK-EFKSKKLSLVELDITDQESLEEFLSK 76 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEecC--hHHHHHHHH-HHHh-hcCCCceeEEEecCCCHHHHHHHHHH
Confidence 368999998 6799999999976 48899888754 344443322 0000 11122233468999999887652
Q ss_pred ---CCCCcceEEEec
Q 004585 718 ---PLETFDSMSHWK 729 (744)
Q Consensus 718 ---~I~~~DavIilT 729 (744)
.....|.+|-.+
T Consensus 77 ~~~~~~~id~vi~~A 91 (256)
T PRK09186 77 SAEKYGKIDGAVNCA 91 (256)
T ss_pred HHHHcCCccEEEECC
Confidence 123368888665
No 376
>PRK05599 hypothetical protein; Provisional
Probab=68.40 E-value=16 Score=37.78 Aligned_cols=65 Identities=29% Similarity=0.183 Sum_probs=44.1
Q ss_pred eEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhcc
Q 004585 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (744)
Q Consensus 384 HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA 456 (744)
.++|.|.+. .|..++++|.+ + ..|+++.++++..++..+++.. .....+.++..|.+|++.++++
T Consensus 2 ~vlItGas~GIG~aia~~l~~-g------~~Vil~~r~~~~~~~~~~~l~~-~~~~~~~~~~~Dv~d~~~v~~~ 67 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLCH-G------EDVVLAARRPEAAQGLASDLRQ-RGATSVHVLSFDAQDLDTHREL 67 (246)
T ss_pred eEEEEeCccHHHHHHHHHHhC-C------CEEEEEeCCHHHHHHHHHHHHh-ccCCceEEEEcccCCHHHHHHH
Confidence 578999877 68899999862 2 5678888888777766544311 1112366778888887776653
No 377
>PLN02572 UDP-sulfoquinovose synthase
Probab=68.40 E-value=15 Score=42.05 Aligned_cols=78 Identities=14% Similarity=0.129 Sum_probs=51.4
Q ss_pred CCceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCC--ch----------------HHHHHhhcCCCCcCCCCCceE
Q 004585 641 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVP--EK----------------EREKKLTDGGLDISGLMNIKL 701 (744)
Q Consensus 641 ~~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p--~~----------------er~~~l~~~g~~~~~L~n~~V 701 (744)
..++|||.|+ |-+|..+++.|.+ .|.+|++++... .. ++.+.+.+ ..+..+
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~---~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~v 115 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSK---RGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKE-------VSGKEI 115 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHH---CCCeEEEEeccccccccccccccccccccchHHHHHHHHH-------hhCCcc
Confidence 4568999998 8899999999976 488999986311 00 11111110 011124
Q ss_pred EEEEcCcCCHhhHhcCCCC--CcceEEEec
Q 004585 702 VHREGNAVIRRHLESLPLE--TFDSMSHWK 729 (744)
Q Consensus 702 ~~i~GD~td~~~L~e~~I~--~~DavIilT 729 (744)
.++.||.+|.+.++++ +. ..|.||-++
T Consensus 116 ~~v~~Dl~d~~~v~~~-l~~~~~D~ViHlA 144 (442)
T PLN02572 116 ELYVGDICDFEFLSEA-FKSFEPDAVVHFG 144 (442)
T ss_pred eEEECCCCCHHHHHHH-HHhCCCCEEEECC
Confidence 5689999999888763 22 479998877
No 378
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=68.36 E-value=37 Score=39.25 Aligned_cols=45 Identities=22% Similarity=0.288 Sum_probs=36.5
Q ss_pred CCCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccC------CchHHHHHhh
Q 004585 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV------PEKEREKKLT 687 (744)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~------p~~er~~~l~ 687 (744)
+-|++++|+|+|-+|..++..+.+. |++||||+.. -|+|-.+.+.
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~L---G~~VTiie~~~~iLp~~D~ei~~~~~ 221 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAAL---GSKVTVVERGDRILPGEDPEISKELT 221 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHc---CCcEEEEecCCCCCCcCCHHHHHHHH
Confidence 5688999999999999999999986 9999999853 2455555444
No 379
>PRK06483 dihydromonapterin reductase; Provisional
Probab=68.34 E-value=14 Score=37.59 Aligned_cols=75 Identities=21% Similarity=0.107 Sum_probs=47.5
Q ss_pred cCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC---
Q 004585 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (744)
Q Consensus 382 k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (744)
...++|.|.+. .|..++++|...+ ..|++++++++.....++. .++.++.+|.++++.++++-
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G------~~V~~~~r~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~ 68 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQG------QPVIVSYRTHYPAIDGLRQ-------AGAQCIQADFSTNAGIMAFIDEL 68 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCC------CeEEEEeCCchhHHHHHHH-------cCCEEEEcCCCCHHHHHHHHHHH
Confidence 34789999765 6899999998643 5777788776443322221 23567888888887765531
Q ss_pred ---cccccEEEEecC
Q 004585 458 ---VSKARAIIVLAS 469 (744)
Q Consensus 458 ---I~~A~aVIiltd 469 (744)
...-|.+|-.+.
T Consensus 69 ~~~~~~id~lv~~ag 83 (236)
T PRK06483 69 KQHTDGLRAIIHNAS 83 (236)
T ss_pred HhhCCCccEEEECCc
Confidence 123456665543
No 380
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=68.34 E-value=12 Score=40.72 Aligned_cols=80 Identities=14% Similarity=0.084 Sum_probs=51.9
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCc---hHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPE---KEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~---~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~ 717 (744)
.++|||.|+ |-+|..++++|.+ .|.+|.++...+. .++.+.+.+.. ...+..+.++.+|.+|.+.+++.
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~---~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~Dl~d~~~~~~~ 78 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLS---KGYEVHGIIRRSSNFNTQRLDHIYIDP----HPNKARMKLHYGDLSDASSLRRW 78 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHH---CCCEEEEEecccccccccchhhhcccc----ccccCceEEEEecCCCHHHHHHH
Confidence 368999998 7899999999976 4889998875321 12222222100 00122355789999999887653
Q ss_pred CCC--CcceEEEec
Q 004585 718 PLE--TFDSMSHWK 729 (744)
Q Consensus 718 ~I~--~~DavIilT 729 (744)
++ ..|.+|-++
T Consensus 79 -~~~~~~d~Vih~A 91 (340)
T PLN02653 79 -LDDIKPDEVYNLA 91 (340)
T ss_pred -HHHcCCCEEEECC
Confidence 22 368888765
No 381
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=68.31 E-value=45 Score=32.55 Aligned_cols=93 Identities=22% Similarity=0.323 Sum_probs=54.6
Q ss_pred CeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCccccc
Q 004585 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (744)
Q Consensus 383 ~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~ 462 (744)
.+|=++|.|..|..+++.|...+ +.|.+.|++++.++.+.+. .+.. ..+++++ +++||
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g------~~v~~~d~~~~~~~~~~~~--------g~~~----~~s~~e~----~~~~d 59 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAG------YEVTVYDRSPEKAEALAEA--------GAEV----ADSPAEA----AEQAD 59 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTT------TEEEEEESSHHHHHHHHHT--------TEEE----ESSHHHH----HHHBS
T ss_pred CEEEEEchHHHHHHHHHHHHhcC------CeEEeeccchhhhhhhHHh--------hhhh----hhhhhhH----hhccc
Confidence 47889999999999999998754 7889999999888877542 2221 1233333 33558
Q ss_pred EEEEecCCCCCCcchHHHHHHHHH---HhhhcCCCCccEEEEecCCC
Q 004585 463 AIIVLASDENADQSDARALRVVLS---LTGVKEGLRGHVVVEMSDLD 506 (744)
Q Consensus 463 aVIiltdd~~~~~sD~~NI~~~Ls---ar~l~p~~~~~IIArv~d~e 506 (744)
.|+.+..+ |...-.++.. +..+.+ ..+++...+..
T Consensus 60 vvi~~v~~------~~~v~~v~~~~~i~~~l~~---g~iiid~sT~~ 97 (163)
T PF03446_consen 60 VVILCVPD------DDAVEAVLFGENILAGLRP---GKIIIDMSTIS 97 (163)
T ss_dssp EEEE-SSS------HHHHHHHHHCTTHGGGS-T---TEEEEE-SS--
T ss_pred ceEeeccc------chhhhhhhhhhHHhhcccc---ceEEEecCCcc
Confidence 88888743 3332233332 333433 35777766543
No 382
>PRK06953 short chain dehydrogenase; Provisional
Probab=67.86 E-value=22 Score=35.93 Aligned_cols=72 Identities=14% Similarity=0.047 Sum_probs=50.6
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC--CC
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--PL 719 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--~I 719 (744)
++++|.|+ |.+|..+++.|.+ .|.+|.++...+ +..+.+.+. + +..+.+|.+|++.+++. .+
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~---~G~~v~~~~r~~--~~~~~~~~~--------~--~~~~~~D~~~~~~v~~~~~~~ 66 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRA---DGWRVIATARDA--AALAALQAL--------G--AEALALDVADPASVAGLAWKL 66 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHh---CCCEEEEEECCH--HHHHHHHhc--------c--ceEEEecCCCHHHHHHHHHHh
Confidence 46888886 6789999999975 489999988643 444444321 2 23478999999988773 12
Q ss_pred --CCcceEEEec
Q 004585 720 --ETFDSMSHWK 729 (744)
Q Consensus 720 --~~~DavIilT 729 (744)
+..|.++..+
T Consensus 67 ~~~~~d~vi~~a 78 (222)
T PRK06953 67 DGEALDAAVYVA 78 (222)
T ss_pred cCCCCCEEEECC
Confidence 3578888765
No 383
>PLN02686 cinnamoyl-CoA reductase
Probab=67.86 E-value=14 Score=41.07 Aligned_cols=83 Identities=13% Similarity=0.021 Sum_probs=52.1
Q ss_pred CCceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCC-CCcCCCCCceEEEEEcCcCCHhhHhcCC
Q 004585 641 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGG-LDISGLMNIKLVHREGNAVIRRHLESLP 718 (744)
Q Consensus 641 ~~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g-~~~~~L~n~~V~~i~GD~td~~~L~e~~ 718 (744)
..++|||.|+ |-+|..+++.|.+ .|.+|+++..++ +..+.+.+.. .......+..+..+.||.+|.+.++++
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~---~G~~V~~~~r~~--~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~- 125 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLR---HGYSVRIAVDTQ--EDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEA- 125 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHH-
Confidence 3568999998 7899999999976 488998765432 2222222100 000000011245688999999988775
Q ss_pred CCCcceEEEec
Q 004585 719 LETFDSMSHWK 729 (744)
Q Consensus 719 I~~~DavIilT 729 (744)
++.+|.++-+.
T Consensus 126 i~~~d~V~hlA 136 (367)
T PLN02686 126 FDGCAGVFHTS 136 (367)
T ss_pred HHhccEEEecC
Confidence 56678777554
No 384
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.83 E-value=20 Score=36.70 Aligned_cols=80 Identities=14% Similarity=0.164 Sum_probs=53.0
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEE-EcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC--c
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVL-AERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--V 458 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVL-id~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--I 458 (744)
.+++|.|.+. .|..++++|.+.+ ..|++ ..++.+..++..++.. ..+.++.++.+|.++++.++++- +
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g------~~v~~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEG------YDIAVNYARSRKAAEETAEEIE--ALGRKALAVKANVGDVEKIKEMFAQI 76 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC------CEEEEEcCCCHHHHHHHHHHHH--hcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 4799999765 6899999998754 34444 4666655554443321 12346788999999999877642 1
Q ss_pred ----ccccEEEEecCC
Q 004585 459 ----SKARAIIVLASD 470 (744)
Q Consensus 459 ----~~A~aVIiltdd 470 (744)
...|.+|-.+..
T Consensus 77 ~~~~~~id~vi~~ag~ 92 (250)
T PRK08063 77 DEEFGRLDVFVNNAAS 92 (250)
T ss_pred HHHcCCCCEEEECCCC
Confidence 256888887753
No 385
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=67.80 E-value=26 Score=43.05 Aligned_cols=57 Identities=16% Similarity=0.335 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHhhhcCCCC-CCCCCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004585 312 SSFAEALWLSWTFVADSGNH-ADRVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEK 368 (744)
Q Consensus 312 ~s~~dA~y~~~~tltTvGyg-d~~~t~~gRi~~v~lil~Gi~i~a~lig~It~~i~~~ 368 (744)
.++..|+|..|..+..---- +.|.++.+|+.+.+|.++++++++.-++-++.++.+.
T Consensus 608 FtigkaiwllwaLvFnnsVpv~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMIqE 665 (1258)
T KOG1053|consen 608 FTIGKAIWLLWALVFNNSVPVENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQE 665 (1258)
T ss_pred eehhhHHHHHHHHHhCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 57899999888766531111 2256788999999999999999988887777655543
No 386
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=67.78 E-value=27 Score=33.17 Aligned_cols=73 Identities=19% Similarity=0.101 Sum_probs=44.2
Q ss_pred EEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhccc---CCCcEEEEEeCCCCHHHHhccCcccc
Q 004585 385 ILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDF---MGTSVICRSGSPLILADLKKVSVSKA 461 (744)
Q Consensus 385 III~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~---~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (744)
|.|+|.|..|..++..|...+ +.|.++.+.+ ..+...+ ..... .+.......-....+ ....+.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g------~~V~l~~r~~-~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 68 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG------HDVTLVSRSP-RLEAIKE-QGLTITGPDGDETVQPPIVISAP----SADAGPY 68 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT------CEEEEEESHH-HHHHHHH-HCEEEEETTEEEEEEEEEEESSH----GHHHSTE
T ss_pred CEEECcCHHHHHHHHHHHHCC------CceEEEEccc-cHHhhhh-eeEEEEecccceecccccccCcc----hhccCCC
Confidence 689999999999999998754 7899999877 5555322 11111 111111111111112 4466789
Q ss_pred cEEEEecC
Q 004585 462 RAIIVLAS 469 (744)
Q Consensus 462 ~aVIiltd 469 (744)
|.||+++.
T Consensus 69 D~viv~vK 76 (151)
T PF02558_consen 69 DLVIVAVK 76 (151)
T ss_dssp SEEEE-SS
T ss_pred cEEEEEec
Confidence 99999985
No 387
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=67.77 E-value=12 Score=45.09 Aligned_cols=34 Identities=12% Similarity=0.005 Sum_probs=30.2
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~ 677 (744)
..++|+|+|+|..|...|..|.+. |.+|+|+|..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~---G~~V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARN---GVAVTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCeEEEEecC
Confidence 467999999999999999999864 8999999974
No 388
>PRK12939 short chain dehydrogenase; Provisional
Probab=67.72 E-value=14 Score=37.66 Aligned_cols=79 Identities=11% Similarity=0.132 Sum_probs=52.7
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--- 717 (744)
.++++|.|+ |.+|..+++.|.+ .|.+|.++... ++..+.+.+. +. . .+..+..+.+|.+|++.+++.
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~---~G~~v~~~~r~--~~~~~~~~~~-~~--~-~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAE---AGATVAFNDGL--AAEARELAAA-LE--A-AGGRAHAIAADLADPASVQRFFDA 77 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHH---cCCEEEEEeCC--HHHHHHHHHH-HH--h-cCCcEEEEEccCCCHHHHHHHHHH
Confidence 468999997 7899999999976 48899888754 3444433220 00 0 112355588999999887642
Q ss_pred ---CCCCcceEEEec
Q 004585 718 ---PLETFDSMSHWK 729 (744)
Q Consensus 718 ---~I~~~DavIilT 729 (744)
.....|.+|-.+
T Consensus 78 ~~~~~~~id~vi~~a 92 (250)
T PRK12939 78 AAAALGGLDGLVNNA 92 (250)
T ss_pred HHHHcCCCCEEEECC
Confidence 124688888766
No 389
>PRK05884 short chain dehydrogenase; Provisional
Probab=67.71 E-value=13 Score=38.06 Aligned_cols=71 Identities=10% Similarity=0.093 Sum_probs=49.9
Q ss_pred eEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCC--C-
Q 004585 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP--L- 719 (744)
Q Consensus 644 rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~--I- 719 (744)
+++|.|+ |.+|..+++.|.+ .|.+|.++... +++.+.+.+ .+ + +.++.+|.+|++.+++.- +
T Consensus 2 ~vlItGas~giG~~ia~~l~~---~g~~v~~~~r~--~~~~~~~~~------~~-~--~~~~~~D~~~~~~v~~~~~~~~ 67 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRN---DGHKVTLVGAR--RDDLEVAAK------EL-D--VDAIVCDNTDPASLEEARGLFP 67 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHH------hc-c--CcEEecCCCCHHHHHHHHHHHh
Confidence 5889987 6899999999975 48899998753 456555543 12 2 335789999999876531 1
Q ss_pred CCcceEEEe
Q 004585 720 ETFDSMSHW 728 (744)
Q Consensus 720 ~~~DavIil 728 (744)
+..|.+|-.
T Consensus 68 ~~id~lv~~ 76 (223)
T PRK05884 68 HHLDTIVNV 76 (223)
T ss_pred hcCcEEEEC
Confidence 246887765
No 390
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=67.61 E-value=17 Score=37.39 Aligned_cols=78 Identities=15% Similarity=0.068 Sum_probs=50.7
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC----
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~---- 717 (744)
+.++|.|+ |.+|..+++.|.+ .|.+|.++... .++.+.+.+. +. . .+..+..+.+|.+|++.+++.
T Consensus 1 k~~lItG~sg~iG~~la~~l~~---~G~~v~~~~r~--~~~~~~~~~~-l~--~-~~~~~~~~~~Dl~~~~~i~~~~~~~ 71 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAK---DGFAVAVADLN--EETAKETAKE-IN--Q-AGGKAVAYKLDVSDKDQVFSAIDQA 71 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHHH-HH--h-cCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 46899997 6889999999976 48899998864 3333332210 00 0 122344588999999987653
Q ss_pred --CCCCcceEEEec
Q 004585 718 --PLETFDSMSHWK 729 (744)
Q Consensus 718 --~I~~~DavIilT 729 (744)
.....|.+|-.+
T Consensus 72 ~~~~~~id~vi~~a 85 (254)
T TIGR02415 72 AEKFGGFDVMVNNA 85 (254)
T ss_pred HHHcCCCCEEEECC
Confidence 223568877655
No 391
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=67.55 E-value=51 Score=35.65 Aligned_cols=68 Identities=15% Similarity=0.193 Sum_probs=48.5
Q ss_pred eEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCcccccE
Q 004585 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (744)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~a 463 (744)
+|-|+|.|..|..+++.|...+ +.|++.|++++.++.+.+. +... ..+.+++.++ +.++|.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g------~~V~~~dr~~~~~~~l~~~--------g~~~----~~s~~~~~~~-~~~~dv 62 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRG------HDCVGYDHDQDAVKAMKED--------RTTG----VANLRELSQR-LSAPRV 62 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHc--------CCcc----cCCHHHHHhh-cCCCCE
Confidence 6889999999999999998653 6788899999887766431 1111 1344554432 457899
Q ss_pred EEEecCC
Q 004585 464 IIVLASD 470 (744)
Q Consensus 464 VIiltdd 470 (744)
|+++..+
T Consensus 63 Ii~~vp~ 69 (298)
T TIGR00872 63 VWVMVPH 69 (298)
T ss_pred EEEEcCc
Confidence 9998853
No 392
>PRK05872 short chain dehydrogenase; Provisional
Probab=67.52 E-value=19 Score=38.44 Aligned_cols=79 Identities=14% Similarity=0.160 Sum_probs=54.2
Q ss_pred cCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC---
Q 004585 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (744)
Q Consensus 382 k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (744)
...++|.|.+. .|..++++|...+ ..|++++++++.++...+++. .+..+.++..|.++++.++++-
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G------~~V~~~~r~~~~l~~~~~~l~---~~~~~~~~~~Dv~d~~~v~~~~~~~ 79 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARG------AKLALVDLEEAELAALAAELG---GDDRVLTVVADVTDLAAMQAAAEEA 79 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHhc---CCCcEEEEEecCCCHHHHHHHHHHH
Confidence 35788888755 6889999997643 578888998887776654431 1234666778999988876641
Q ss_pred ---cccccEEEEecC
Q 004585 458 ---VSKARAIIVLAS 469 (744)
Q Consensus 458 ---I~~A~aVIiltd 469 (744)
...-|.+|..+.
T Consensus 80 ~~~~g~id~vI~nAG 94 (296)
T PRK05872 80 VERFGGIDVVVANAG 94 (296)
T ss_pred HHHcCCCCEEEECCC
Confidence 134577776664
No 393
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=67.50 E-value=9.7 Score=42.35 Aligned_cols=65 Identities=14% Similarity=0.254 Sum_probs=45.4
Q ss_pred cCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHH-HHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCccc
Q 004585 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEE-MEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (744)
Q Consensus 382 k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~-le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (744)
-..+||||||..|.-++..|+.. |..|++.|.||-. +|...+ +.+| . .+++| ++.
T Consensus 209 GK~vVV~GYG~vGrG~A~~~rg~------GA~ViVtEvDPI~AleA~Md-------Gf~V--~--------~m~~A-a~~ 264 (420)
T COG0499 209 GKNVVVAGYGWVGRGIAMRLRGM------GARVIVTEVDPIRALEAAMD-------GFRV--M--------TMEEA-AKT 264 (420)
T ss_pred CceEEEecccccchHHHHHhhcC------CCeEEEEecCchHHHHHhhc-------CcEE--E--------EhHHh-hhc
Confidence 45789999999999999999865 4789999999854 332221 2223 2 24443 567
Q ss_pred ccEEEEecCC
Q 004585 461 ARAIIVLASD 470 (744)
Q Consensus 461 A~aVIiltdd 470 (744)
||.+|..|.+
T Consensus 265 gDifiT~TGn 274 (420)
T COG0499 265 GDIFVTATGN 274 (420)
T ss_pred CCEEEEccCC
Confidence 8999998865
No 394
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=67.48 E-value=7.3 Score=44.95 Aligned_cols=34 Identities=12% Similarity=0.014 Sum_probs=29.6
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~ 677 (744)
..++|+|+|+|..|...+..|.+. |.+|+++|..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~---G~~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARA---GHKVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC---CCcEEEEecC
Confidence 456999999999999999999764 8899999964
No 395
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=67.38 E-value=20 Score=37.12 Aligned_cols=77 Identities=14% Similarity=0.143 Sum_probs=52.0
Q ss_pred CceEEEEccc-chHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004585 642 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (744)
Q Consensus 642 ~~rILI~Gwg-~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--- 717 (744)
.+.++|.|+. .+|..++++|.+ .|.+|.+++....++..+.+.+ + +..+..+++|.+|++.+++.
T Consensus 10 ~k~~lItG~~~gIG~a~a~~l~~---~G~~vv~~~~~~~~~~~~~~~~-------~-~~~~~~~~~Dl~~~~~~~~~~~~ 78 (253)
T PRK08993 10 GKVAVVTGCDTGLGQGMALGLAE---AGCDIVGINIVEPTETIEQVTA-------L-GRRFLSLTADLRKIDGIPALLER 78 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEecCcchHHHHHHHHh-------c-CCeEEEEECCCCCHHHHHHHHHH
Confidence 4689999985 689999999976 4889988875443333344432 1 22355689999998777542
Q ss_pred ---CCCCcceEEEec
Q 004585 718 ---PLETFDSMSHWK 729 (744)
Q Consensus 718 ---~I~~~DavIilT 729 (744)
..+..|.+|-.+
T Consensus 79 ~~~~~~~~D~li~~A 93 (253)
T PRK08993 79 AVAEFGHIDILVNNA 93 (253)
T ss_pred HHHHhCCCCEEEECC
Confidence 123578877655
No 396
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=67.36 E-value=20 Score=36.89 Aligned_cols=74 Identities=16% Similarity=0.121 Sum_probs=51.1
Q ss_pred eEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC-----
Q 004585 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL----- 717 (744)
Q Consensus 644 rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~----- 717 (744)
+++|.|+ |.+|..+++.|.+ .|.+|.+++..+ ++.+.+.+ .+ +..+..+.+|.+|.+.+++.
T Consensus 2 ~vlItGasg~iG~~la~~l~~---~G~~V~~~~r~~--~~~~~~~~------~~-~~~~~~~~~Dl~~~~~i~~~~~~~~ 69 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQ---QGHKVIATGRRQ--ERLQELKD------EL-GDNLYIAQLDVRNRAAIEEMLASLP 69 (248)
T ss_pred EEEEECCCchHHHHHHHHHHH---CCCEEEEEECCH--HHHHHHHH------Hh-ccceEEEEecCCCHHHHHHHHHHHH
Confidence 6899997 7799999999976 489999998653 44444432 11 12344578999999877542
Q ss_pred -CCCCcceEEEec
Q 004585 718 -PLETFDSMSHWK 729 (744)
Q Consensus 718 -~I~~~DavIilT 729 (744)
.....|.+|..+
T Consensus 70 ~~~~~id~vi~~a 82 (248)
T PRK10538 70 AEWRNIDVLVNNA 82 (248)
T ss_pred HHcCCCCEEEECC
Confidence 234678888654
No 397
>PRK08251 short chain dehydrogenase; Provisional
Probab=67.34 E-value=14 Score=37.88 Aligned_cols=80 Identities=19% Similarity=0.127 Sum_probs=53.1
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhc-----
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES----- 716 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e----- 716 (744)
++++|.|+ |.+|..+++.|.+ .|.+|.++...+ ++.+.+.+. + ....++..+..+.+|.+|++.+++
T Consensus 3 k~vlItGas~giG~~la~~l~~---~g~~v~~~~r~~--~~~~~~~~~-~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 75 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAA---KGRDLALCARRT--DRLEELKAE-L-LARYPGIKVAVAALDVNDHDQVFEVFAEF 75 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHH---cCCEEEEEeCCH--HHHHHHHHH-H-HhhCCCceEEEEEcCCCCHHHHHHHHHHH
Confidence 57999997 5789999999976 478998887643 443333220 0 002234566678999999987653
Q ss_pred -CCCCCcceEEEec
Q 004585 717 -LPLETFDSMSHWK 729 (744)
Q Consensus 717 -~~I~~~DavIilT 729 (744)
...+..|.+|..+
T Consensus 76 ~~~~~~id~vi~~a 89 (248)
T PRK08251 76 RDELGGLDRVIVNA 89 (248)
T ss_pred HHHcCCCCEEEECC
Confidence 2245678888765
No 398
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=67.27 E-value=43 Score=35.80 Aligned_cols=38 Identities=18% Similarity=0.098 Sum_probs=30.7
Q ss_pred CeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHH
Q 004585 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMD 427 (744)
Q Consensus 383 ~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~ 427 (744)
++|.|+|.|..|..++..|...+ +.|.++++ ++.++.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g------~~V~~~~r-~~~~~~~ 38 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAG------RDVTFLVR-PKRAKAL 38 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC------CceEEEec-HHHHHHH
Confidence 47999999999999999998653 67888888 6566554
No 399
>PRK06181 short chain dehydrogenase; Provisional
Probab=67.26 E-value=13 Score=38.62 Aligned_cols=78 Identities=13% Similarity=0.090 Sum_probs=51.1
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC----
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~---- 717 (744)
+++||.|+ |.+|..+++.|.+ .|.+|.+++.++ +..+.+.+. + ... +..+.++.+|.+|++.++++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~---~g~~Vi~~~r~~--~~~~~~~~~-l--~~~-~~~~~~~~~Dl~~~~~~~~~~~~~ 72 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLAR---AGAQLVLAARNE--TRLASLAQE-L--ADH-GGEALVVPTDVSDAEACERLIEAA 72 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHH-H--Hhc-CCcEEEEEccCCCHHHHHHHHHHH
Confidence 46899999 7799999999965 488999998653 222222210 0 011 22455688999998877652
Q ss_pred --CCCCcceEEEec
Q 004585 718 --PLETFDSMSHWK 729 (744)
Q Consensus 718 --~I~~~DavIilT 729 (744)
.....|.+|..+
T Consensus 73 ~~~~~~id~vi~~a 86 (263)
T PRK06181 73 VARFGGIDILVNNA 86 (263)
T ss_pred HHHcCCCCEEEECC
Confidence 124678888775
No 400
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.09 E-value=16 Score=38.24 Aligned_cols=78 Identities=18% Similarity=0.155 Sum_probs=52.1
Q ss_pred CceEEEEcc---cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC-
Q 004585 642 PEKILFCGW---RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL- 717 (744)
Q Consensus 642 ~~rILI~Gw---g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~- 717 (744)
.+.++|.|. +.+|..+++.|.+ .|..|.+....+.++..+.+.+ .+.. .+..+..|.+|++..++.
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~---~G~~v~l~~r~~~~~~~~~~~~------~~~~-~~~~~~~Dv~~~~~i~~~~ 76 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQE---QGAEVVLTGFGRALRLTERIAK------RLPE-PAPVLELDVTNEEHLASLA 76 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHH---CCCEEEEecCccchhHHHHHHH------hcCC-CCcEEeCCCCCHHHHHHHH
Confidence 368999996 6899999999976 4889988875332344444443 1221 233578999999876542
Q ss_pred -----CCCCcceEEEec
Q 004585 718 -----PLETFDSMSHWK 729 (744)
Q Consensus 718 -----~I~~~DavIilT 729 (744)
..+..|.+|.-+
T Consensus 77 ~~~~~~~g~iD~li~nA 93 (256)
T PRK07889 77 DRVREHVDGLDGVVHSI 93 (256)
T ss_pred HHHHHHcCCCcEEEEcc
Confidence 245688877644
No 401
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=67.01 E-value=15 Score=40.20 Aligned_cols=77 Identities=16% Similarity=0.095 Sum_probs=50.2
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I~ 720 (744)
.++|+|.|+ |-+|..+++.|.+ .|.+|.+++..+.. ........ ... ..+.++.||.+|.+.+++. ++
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~---~G~~V~~~~r~~~~-~~~~~~~~-----~~~-~~~~~~~~Dl~~~~~~~~~-~~ 72 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLE---LGAEVYGYSLDPPT-SPNLFELL-----NLA-KKIEDHFGDIRDAAKLRKA-IA 72 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHH---CCCEEEEEeCCCcc-chhHHHHH-----hhc-CCceEEEccCCCHHHHHHH-Hh
Confidence 368999998 7799999999976 48899988764321 11111100 011 1244588999999988764 22
Q ss_pred --CcceEEEec
Q 004585 721 --TFDSMSHWK 729 (744)
Q Consensus 721 --~~DavIilT 729 (744)
..|.||-++
T Consensus 73 ~~~~d~vih~A 83 (349)
T TIGR02622 73 EFKPEIVFHLA 83 (349)
T ss_pred hcCCCEEEECC
Confidence 368888666
No 402
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=66.95 E-value=15 Score=39.63 Aligned_cols=79 Identities=15% Similarity=0.023 Sum_probs=48.7
Q ss_pred eEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC-cccc
Q 004585 384 HILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-VSKA 461 (744)
Q Consensus 384 HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg-I~~A 461 (744)
+++|.|. |-.|..++++|...+ +.|+++++............ ....+.++.++.||.++.+.+.++- -.++
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~g------~~V~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 74 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQNG------HDVVILDNLCNSKRSVLPVI-ERLGGKHPTFVEGDIRNEALLTEILHDHAI 74 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHCC------CeEEEEecCCCchHhHHHHH-HHhcCCCceEEEccCCCHHHHHHHHhcCCC
Confidence 6899995 667999999998754 56666653211111111100 0111235678899999999887652 1257
Q ss_pred cEEEEecC
Q 004585 462 RAIIVLAS 469 (744)
Q Consensus 462 ~aVIiltd 469 (744)
|.||-++.
T Consensus 75 d~vvh~a~ 82 (338)
T PRK10675 75 DTVIHFAG 82 (338)
T ss_pred CEEEECCc
Confidence 88888764
No 403
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=66.93 E-value=23 Score=36.18 Aligned_cols=86 Identities=10% Similarity=0.098 Sum_probs=51.2
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCC-EEEEEccCCch----HHHHH-hhcCCCC--------c-CCCCCceEEEEE
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEK----EREKK-LTDGGLD--------I-SGLMNIKLVHRE 705 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs-~v~IIe~~p~~----er~~~-l~~~g~~--------~-~~L~n~~V~~i~ 705 (744)
...+|+|+|.|..|..++..|... |. ++++++.+..+ .|... ..+.|-. . .--+++.+..+.
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~---Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARA---GIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHc---CCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 456899999999999999999864 77 69999875111 11100 0000100 0 011345665555
Q ss_pred cCcCCHhhHhcCCCCCcceEEEecCc
Q 004585 706 GNAVIRRHLESLPLETFDSMSHWKTR 731 (744)
Q Consensus 706 GD~td~~~L~e~~I~~~DavIilTde 731 (744)
.+.+. +.+.+. ++.+|.||-.+|.
T Consensus 97 ~~i~~-~~~~~~-~~~~DlVi~a~Dn 120 (200)
T TIGR02354 97 EKITE-ENIDKF-FKDADIVCEAFDN 120 (200)
T ss_pred eeCCH-hHHHHH-hcCCCEEEECCCC
Confidence 55543 444433 6789999988744
No 404
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=66.82 E-value=7.5 Score=41.98 Aligned_cols=42 Identities=19% Similarity=0.243 Sum_probs=35.1
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCC-EEEEEccCCchHHHHHhhc
Q 004585 642 PEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEKEREKKLTD 688 (744)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~~~~gs-~v~IIe~~p~~er~~~l~~ 688 (744)
.++++|+|.|..+..++..|... |. +|+|++. +.+|.+.+++
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~---G~~~I~I~nR--~~~ka~~la~ 169 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTL---GVERLTIFDV--DPARAAALAD 169 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc---CCCEEEEECC--CHHHHHHHHH
Confidence 47899999999999999999763 54 7999996 4688888875
No 405
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=66.80 E-value=18 Score=37.12 Aligned_cols=77 Identities=8% Similarity=-0.011 Sum_probs=50.7
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhH-------
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHL------- 714 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L------- 714 (744)
++++|.|+ |-+|..+++.|.+ .|.+|.++...+ ++.+.+.+. + .-....+..+.+|.+|.+.+
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~---~g~~v~~~~r~~--~~~~~~~~~-~---~~~~~~~~~~~~D~~~~~~~~~~~~~~ 72 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAA---AGANVVVNDLGE--AGAEAAAKV-A---TDAGGSVIYLVADVTKEDEIADMIAAA 72 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHH-H---HhcCCceEEEECCCCCHHHHHHHHHHH
Confidence 47999997 6889999999975 488999998643 444333320 0 00122355688999999844
Q ss_pred hcCCCCCcceEEEec
Q 004585 715 ESLPLETFDSMSHWK 729 (744)
Q Consensus 715 ~e~~I~~~DavIilT 729 (744)
++. ....|.+|...
T Consensus 73 ~~~-~~~~d~vi~~a 86 (255)
T TIGR01963 73 AAE-FGGLDILVNNA 86 (255)
T ss_pred HHh-cCCCCEEEECC
Confidence 322 45678887665
No 406
>PRK07904 short chain dehydrogenase; Provisional
Probab=66.79 E-value=16 Score=38.09 Aligned_cols=80 Identities=9% Similarity=-0.104 Sum_probs=49.7
Q ss_pred CCceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHH---HHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhc
Q 004585 641 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKER---EKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES 716 (744)
Q Consensus 641 ~~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er---~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e 716 (744)
..++++|.|+ |.+|..++++|.+. .|..|.++..+++... .+++.+ ..+..+..+.+|.+|.+..++
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~--gg~~V~~~~r~~~~~~~~~~~~l~~-------~~~~~v~~~~~D~~~~~~~~~ 77 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKN--APARVVLAALPDDPRRDAAVAQMKA-------AGASSVEVIDFDALDTDSHPK 77 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhc--CCCeEEEEeCCcchhHHHHHHHHHh-------cCCCceEEEEecCCChHHHHH
Confidence 4568999998 56899999998753 2489998876543211 122222 112245568899999775432
Q ss_pred ----C-CCCCcceEEEec
Q 004585 717 ----L-PLETFDSMSHWK 729 (744)
Q Consensus 717 ----~-~I~~~DavIilT 729 (744)
. .-+..|.+|.-.
T Consensus 78 ~~~~~~~~g~id~li~~a 95 (253)
T PRK07904 78 VIDAAFAGGDVDVAIVAF 95 (253)
T ss_pred HHHHHHhcCCCCEEEEee
Confidence 1 114688777533
No 407
>PRK07201 short chain dehydrogenase; Provisional
Probab=66.79 E-value=18 Score=43.20 Aligned_cols=77 Identities=13% Similarity=0.051 Sum_probs=52.5
Q ss_pred eEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCH------hhHhc
Q 004585 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIR------RHLES 716 (744)
Q Consensus 644 rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~------~~L~e 716 (744)
+|+|.|+ |-+|..+++.|.+. ..|.+|+.+...+..++.+.+.. .+....+..+.||.+|. +.+++
T Consensus 2 ~ILVTGatGfIG~~lv~~Ll~~-~~g~~V~~l~R~~~~~~~~~~~~------~~~~~~v~~~~~Dl~~~~~~~~~~~~~~ 74 (657)
T PRK07201 2 RYFVTGGTGFIGRRLVSRLLDR-RREATVHVLVRRQSLSRLEALAA------YWGADRVVPLVGDLTEPGLGLSEADIAE 74 (657)
T ss_pred eEEEeCCccHHHHHHHHHHHhc-CCCCEEEEEECcchHHHHHHHHH------hcCCCcEEEEecccCCccCCcCHHHHHH
Confidence 6999998 88999999999731 35889999987544444333322 11112345689999984 55666
Q ss_pred CCCCCcceEEEec
Q 004585 717 LPLETFDSMSHWK 729 (744)
Q Consensus 717 ~~I~~~DavIilT 729 (744)
+ ..+|.||-++
T Consensus 75 l--~~~D~Vih~A 85 (657)
T PRK07201 75 L--GDIDHVVHLA 85 (657)
T ss_pred h--cCCCEEEECc
Confidence 5 7899998665
No 408
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=66.74 E-value=16 Score=37.80 Aligned_cols=76 Identities=8% Similarity=0.005 Sum_probs=53.0
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--- 717 (744)
.++++|.|+ |.+|..+++.|.+ .|.+|.+++.+ .++.+.+.+ .+. ..+..+.+|.+|++.++++
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~---~G~~v~~~~r~--~~~~~~~~~------~~~-~~~~~~~~D~~~~~~~~~~~~~ 73 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLA---EGARVVIADIK--PARARLAAL------EIG-PAAIAVSLDVTRQDSIDRIVAA 73 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---cCCEEEEEcCC--HHHHHHHHH------HhC-CceEEEEccCCCHHHHHHHHHH
Confidence 357999998 6789999999976 48999998864 455554443 121 1244588999999887652
Q ss_pred ---CCCCcceEEEec
Q 004585 718 ---PLETFDSMSHWK 729 (744)
Q Consensus 718 ---~I~~~DavIilT 729 (744)
..+..|.+|-.+
T Consensus 74 ~~~~~~~id~li~~a 88 (257)
T PRK07067 74 AVERFGGIDILFNNA 88 (257)
T ss_pred HHHHcCCCCEEEECC
Confidence 124678888754
No 409
>PRK08862 short chain dehydrogenase; Provisional
Probab=66.64 E-value=21 Score=36.70 Aligned_cols=65 Identities=11% Similarity=0.115 Sum_probs=42.9
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhc
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~r 455 (744)
..++|.|++. .|..++++|...+ ..|+++.++++.+++..++... .+.++..+..|..+++.+++
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G------~~V~~~~r~~~~l~~~~~~i~~--~~~~~~~~~~D~~~~~~~~~ 71 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLG------ATLILCDQDQSALKDTYEQCSA--LTDNVYSFQLKDFSQESIRH 71 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCC------CEEEEEcCCHHHHHHHHHHHHh--cCCCeEEEEccCCCHHHHHH
Confidence 4788999887 6889999998653 6788888888777665443211 12234455556666665543
No 410
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=66.57 E-value=20 Score=45.07 Aligned_cols=35 Identities=14% Similarity=0.089 Sum_probs=31.0
Q ss_pred CCCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccC
Q 004585 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (744)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~ 677 (744)
...+||+|+|+|.-|...|..|.. .|.+|+++|..
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~---~Gh~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLR---SGHNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHh---CCCeEEEEccc
Confidence 456899999999999999999986 49999999963
No 411
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=66.51 E-value=18 Score=35.41 Aligned_cols=42 Identities=24% Similarity=0.267 Sum_probs=34.0
Q ss_pred ceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcC
Q 004585 643 EKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDG 689 (744)
Q Consensus 643 ~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~ 689 (744)
.+|-|+|-|+.|..|++.|.+ .|.+|++.+. +.++++.+.+.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~---~g~~v~~~d~--~~~~~~~~~~~ 43 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAK---AGYEVTVYDR--SPEKAEALAEA 43 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHH---TTTEEEEEES--SHHHHHHHHHT
T ss_pred CEEEEEchHHHHHHHHHHHHh---cCCeEEeecc--chhhhhhhHHh
Confidence 479999999999999999976 4999999986 45888888764
No 412
>PRK12320 hypothetical protein; Provisional
Probab=66.50 E-value=25 Score=42.80 Aligned_cols=69 Identities=22% Similarity=0.136 Sum_probs=49.8
Q ss_pred CeEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCcccc
Q 004585 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (744)
Q Consensus 383 ~HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (744)
++|+|.|. |-.|..++++|...+ +.|+++++.+... ...++.++.||..+.. +.++ +..+
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G------~~Vi~ldr~~~~~-----------~~~~ve~v~~Dl~d~~-l~~a-l~~~ 61 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAG------HTVSGIAQHPHDA-----------LDPRVDYVCASLRNPV-LQEL-AGEA 61 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC------CEEEEEeCChhhc-----------ccCCceEEEccCCCHH-HHHH-hcCC
Confidence 36999995 778999999998654 6788888654321 0135778999999985 5443 4578
Q ss_pred cEEEEecCC
Q 004585 462 RAIIVLASD 470 (744)
Q Consensus 462 ~aVIiltdd 470 (744)
|.||-++..
T Consensus 62 D~VIHLAa~ 70 (699)
T PRK12320 62 DAVIHLAPV 70 (699)
T ss_pred CEEEEcCcc
Confidence 999998864
No 413
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=66.45 E-value=15 Score=38.84 Aligned_cols=77 Identities=18% Similarity=0.113 Sum_probs=51.8
Q ss_pred CceEEEEcc---cchHHHHHHHHHhhcCCCCEEEEEccCC-chHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhc-
Q 004585 642 PEKILFCGW---RRDIDDMIMVLEAFLAPGSELWMLNEVP-EKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES- 716 (744)
Q Consensus 642 ~~rILI~Gw---g~~g~~l~~~L~~~~~~gs~v~IIe~~p-~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e- 716 (744)
.+.++|.|+ +.+|..++++|.+ .|.+|.++.... ..++.+.+.+ ++... ..+..|.+|++.+++
T Consensus 10 ~k~~lItGas~~~GIG~aia~~la~---~G~~V~l~~r~~~~~~~~~~l~~------~~~~~--~~~~~Dl~~~~~v~~~ 78 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRA---AGAELAFTYQGDALKKRVEPLAA------ELGAF--VAGHCDVTDEASIDAV 78 (272)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHH---CCCEEEEEcCchHHHHHHHHHHH------hcCCc--eEEecCCCCHHHHHHH
Confidence 368999998 4799999999976 489998875321 1344555543 23332 247899999887764
Q ss_pred -----CCCCCcceEEEec
Q 004585 717 -----LPLETFDSMSHWK 729 (744)
Q Consensus 717 -----~~I~~~DavIilT 729 (744)
...+..|.+|.-.
T Consensus 79 ~~~~~~~~g~iD~lv~nA 96 (272)
T PRK08159 79 FETLEKKWGKLDFVVHAI 96 (272)
T ss_pred HHHHHHhcCCCcEEEECC
Confidence 2345678777554
No 414
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=66.39 E-value=22 Score=38.39 Aligned_cols=81 Identities=11% Similarity=0.072 Sum_probs=52.6
Q ss_pred cCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCCh---HHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCc
Q 004585 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK---EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (744)
Q Consensus 382 k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~---e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI 458 (744)
..+++|+|.|..+..++..|...+. ..|++++++. ++.+++.+++.. ....+.+...|..+.+.++. .+
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G~-----~~V~I~~R~~~~~~~a~~l~~~l~~--~~~~~~~~~~d~~~~~~~~~-~~ 197 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDGA-----KEITIFNIKDDFYERAEQTAEKIKQ--EVPECIVNVYDLNDTEKLKA-EI 197 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEeCCchHHHHHHHHHHHHhh--cCCCceeEEechhhhhHHHh-hh
Confidence 3589999999999999998886542 3477888875 555555443311 11233445566666666644 35
Q ss_pred ccccEEEEecCC
Q 004585 459 SKARAIIVLASD 470 (744)
Q Consensus 459 ~~A~aVIiltdd 470 (744)
+.+|.+|-.|.-
T Consensus 198 ~~~DilINaTp~ 209 (289)
T PRK12548 198 ASSDILVNATLV 209 (289)
T ss_pred ccCCEEEEeCCC
Confidence 677988888864
No 415
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=66.34 E-value=11 Score=43.25 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=29.6
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccC
Q 004585 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (744)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~ 677 (744)
+++++|+|+|.+|..++..|.+. |.+|++++..
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~---g~~Vtli~~~ 198 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGL---GSETHLVIRH 198 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc---CCcEEEEecC
Confidence 57999999999999999999875 8999999864
No 416
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=66.31 E-value=22 Score=36.09 Aligned_cols=79 Identities=11% Similarity=-0.001 Sum_probs=50.9
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC----
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~---- 717 (744)
++++|.|+ |.+|..+++.|.+ .|..|.++...+. +..+.+.+. . ......+..+.+|.+|++.++++
T Consensus 3 k~vlItG~s~~iG~~la~~l~~---~g~~vi~~~r~~~-~~~~~~~~~-~---~~~~~~~~~~~~D~~~~~~v~~~~~~~ 74 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLN---DGYRVIATYFSGN-DCAKDWFEE-Y---GFTEDQVRLKELDVTDTEECAEALAEI 74 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHH---cCCEEEEEeCCcH-HHHHHHHHH-h---hccCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 57889886 6789999999976 4888988876532 222222210 0 01123455689999999876552
Q ss_pred --CCCCcceEEEec
Q 004585 718 --PLETFDSMSHWK 729 (744)
Q Consensus 718 --~I~~~DavIilT 729 (744)
.....|.+|..+
T Consensus 75 ~~~~~~id~vi~~a 88 (245)
T PRK12824 75 EEEEGPVDILVNNA 88 (245)
T ss_pred HHHcCCCCEEEECC
Confidence 134578888766
No 417
>PRK00536 speE spermidine synthase; Provisional
Probab=66.12 E-value=23 Score=37.94 Aligned_cols=73 Identities=21% Similarity=0.177 Sum_probs=47.4
Q ss_pred ecCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHH---hhhcccCCCcEEEEEeCCCCHHHHhccC
Q 004585 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIA---KLEFDFMGTSVICRSGSPLILADLKKVS 457 (744)
Q Consensus 381 ~k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~---~~~~~~~~~~V~~i~Gd~t~~e~L~rAg 457 (744)
.-.+|+|+|+|+- ..++|+.+.. ..|+++|-|++-++...+ .....+.+.++.++. .+++..
T Consensus 72 ~pk~VLIiGGGDG--g~~REvLkh~------~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-------~~~~~~ 136 (262)
T PRK00536 72 ELKEVLIVDGFDL--ELAHQLFKYD------THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-------QLLDLD 136 (262)
T ss_pred CCCeEEEEcCCch--HHHHHHHCcC------CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-------hhhhcc
Confidence 4579999999983 4567776532 379999999977664432 111224455676664 134444
Q ss_pred cccccEEEEec
Q 004585 458 VSKARAIIVLA 468 (744)
Q Consensus 458 I~~A~aVIilt 468 (744)
.++-|.||+.+
T Consensus 137 ~~~fDVIIvDs 147 (262)
T PRK00536 137 IKKYDLIICLQ 147 (262)
T ss_pred CCcCCEEEEcC
Confidence 46789999874
No 418
>PRK08643 acetoin reductase; Validated
Probab=66.00 E-value=14 Score=38.09 Aligned_cols=76 Identities=12% Similarity=0.046 Sum_probs=50.8
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCC--CceEEEEEcCcCCHhhHhcC--
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM--NIKLVHREGNAVIRRHLESL-- 717 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~--n~~V~~i~GD~td~~~L~e~-- 717 (744)
+.++|.|+ |.+|..+++.|.+ .|.+|.+++..+ ++.+.+.. .+. ...+..+.+|.+|++.+++.
T Consensus 3 k~~lItGas~giG~~la~~l~~---~G~~v~~~~r~~--~~~~~~~~------~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 71 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVE---DGFKVAIVDYNE--ETAQAAAD------KLSKDGGKAIAVKADVSDRDQVFAAVR 71 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHH------HHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 57899998 5689999999976 488999988643 34333322 111 12345688999999876541
Q ss_pred ----CCCCcceEEEec
Q 004585 718 ----PLETFDSMSHWK 729 (744)
Q Consensus 718 ----~I~~~DavIilT 729 (744)
.....|.+|..+
T Consensus 72 ~~~~~~~~id~vi~~a 87 (256)
T PRK08643 72 QVVDTFGDLNVVVNNA 87 (256)
T ss_pred HHHHHcCCCCEEEECC
Confidence 234678888765
No 419
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=66.00 E-value=12 Score=40.44 Aligned_cols=43 Identities=21% Similarity=0.367 Sum_probs=37.1
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCC-CEEEEEccCCchHHHHHhhc
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEKEREKKLTD 688 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g-s~v~IIe~~p~~er~~~l~~ 688 (744)
..++++|+|.|-.+..++..|.+. | .+|+|++.. .+|.++|++
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~---g~~~i~V~NRt--~~ra~~La~ 168 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEA---GAKRITVVNRT--RERAEELAD 168 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc---CCCEEEEEeCC--HHHHHHHHH
Confidence 457899999999999999999874 6 689999974 689999886
No 420
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=65.93 E-value=18 Score=37.63 Aligned_cols=76 Identities=14% Similarity=0.127 Sum_probs=50.7
Q ss_pred CceEEEEccc---chHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhc--
Q 004585 642 PEKILFCGWR---RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES-- 716 (744)
Q Consensus 642 ~~rILI~Gwg---~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e-- 716 (744)
.+.++|.|++ .+|..+++.|.+ .|..|.+...+ ++..+.+.+ +....+..+..|.+|.+..++
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~---~G~~Vi~~~r~--~~~~~~~~~-------~~~~~~~~~~~Dl~~~~~v~~~~ 74 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKD---QGATVIYTYQN--DRMKKSLQK-------LVDEEDLLVECDVASDESIERAF 74 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHH---CCCEEEEecCc--hHHHHHHHh-------hccCceeEEeCCCCCHHHHHHHH
Confidence 4689999985 799999999976 49999988753 222222222 212234568899999887654
Q ss_pred ----CCCCCcceEEEec
Q 004585 717 ----LPLETFDSMSHWK 729 (744)
Q Consensus 717 ----~~I~~~DavIilT 729 (744)
+..+..|.+|.-+
T Consensus 75 ~~~~~~~g~iD~lv~nA 91 (252)
T PRK06079 75 ATIKERVGKIDGIVHAI 91 (252)
T ss_pred HHHHHHhCCCCEEEEcc
Confidence 1235678877543
No 421
>PRK12742 oxidoreductase; Provisional
Probab=65.93 E-value=20 Score=36.45 Aligned_cols=75 Identities=12% Similarity=0.112 Sum_probs=50.1
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC--C
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--P 718 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--~ 718 (744)
.++++|.|+ |.+|..+++.|.+ .|.+|.+.... .+++.+.+.+ .+ +. ..+.+|.+|++.+.+. .
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~---~G~~v~~~~~~-~~~~~~~l~~------~~-~~--~~~~~D~~~~~~~~~~~~~ 72 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVT---DGANVRFTYAG-SKDAAERLAQ------ET-GA--TAVQTDSADRDAVIDVVRK 72 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---CCCEEEEecCC-CHHHHHHHHH------Hh-CC--eEEecCCCCHHHHHHHHHH
Confidence 468999997 6899999999976 48888776532 3345555543 11 22 3467999998866542 2
Q ss_pred CCCcceEEEec
Q 004585 719 LETFDSMSHWK 729 (744)
Q Consensus 719 I~~~DavIilT 729 (744)
....|.+|..+
T Consensus 73 ~~~id~li~~a 83 (237)
T PRK12742 73 SGALDILVVNA 83 (237)
T ss_pred hCCCcEEEECC
Confidence 34578887665
No 422
>PRK07825 short chain dehydrogenase; Provisional
Probab=65.88 E-value=16 Score=38.26 Aligned_cols=74 Identities=14% Similarity=0.015 Sum_probs=50.7
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC----
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~---- 717 (744)
++++|.|+ |.+|..+++.|.+ .|..|.+...+ +++.+.+.+ .+.+ +..+.+|.+|++.+++.
T Consensus 6 ~~ilVtGasggiG~~la~~l~~---~G~~v~~~~r~--~~~~~~~~~------~~~~--~~~~~~D~~~~~~~~~~~~~~ 72 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAA---LGARVAIGDLD--EALAKETAA------ELGL--VVGGPLDVTDPASFAAFLDAV 72 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHH---CCCEEEEEECC--HHHHHHHHH------Hhcc--ceEEEccCCCHHHHHHHHHHH
Confidence 57999998 6789999999976 48898888753 455555443 2333 33578999999876431
Q ss_pred --CCCCcceEEEec
Q 004585 718 --PLETFDSMSHWK 729 (744)
Q Consensus 718 --~I~~~DavIilT 729 (744)
.....|.+|...
T Consensus 73 ~~~~~~id~li~~a 86 (273)
T PRK07825 73 EADLGPIDVLVNNA 86 (273)
T ss_pred HHHcCCCCEEEECC
Confidence 124567777553
No 423
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=65.87 E-value=19 Score=37.20 Aligned_cols=77 Identities=8% Similarity=0.100 Sum_probs=52.1
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCC--CCceEEEEEcCcCCHhhHhc--
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGL--MNIKLVHREGNAVIRRHLES-- 716 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L--~n~~V~~i~GD~td~~~L~e-- 716 (744)
.++++|.|+ +.+|..+++.|.+ .|.++.+++.. +++.+.+.+ .+ ....+..+..|.+|.+.+++
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~---~G~~vv~~~r~--~~~~~~~~~------~l~~~~~~~~~~~~D~~~~~~i~~~~ 79 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFAT---AGASVVVSDIN--ADAANHVVD------EIQQLGGQAFACRCDITSEQELSALA 79 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCeEEEEeCC--HHHHHHHHH------HHHhcCCcEEEEEccCCCHHHHHHHH
Confidence 478999998 4679999999986 48899888753 344433332 11 12235567899999987754
Q ss_pred ----CCCCCcceEEEec
Q 004585 717 ----LPLETFDSMSHWK 729 (744)
Q Consensus 717 ----~~I~~~DavIilT 729 (744)
+.....|.+|-.+
T Consensus 80 ~~~~~~~~~~d~li~~a 96 (255)
T PRK06113 80 DFALSKLGKVDILVNNA 96 (255)
T ss_pred HHHHHHcCCCCEEEECC
Confidence 2235678888765
No 424
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=65.74 E-value=11 Score=47.61 Aligned_cols=34 Identities=12% Similarity=-0.049 Sum_probs=30.1
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~ 677 (744)
..++|+|+|.|.-|...|..|.+. |.+|+|+|..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~---G~~VtVfE~~ 338 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVE---GFPVTVFEAF 338 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC---CCeEEEEeeC
Confidence 357999999999999999999864 9999999964
No 425
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=65.73 E-value=11 Score=42.84 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=29.5
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~ 677 (744)
.+++|+|+|+|.+|..++..|.+. |.+|++++..
T Consensus 156 ~~~~vvIIGgG~~g~e~A~~l~~~---g~~Vtli~~~ 189 (438)
T PRK07251 156 LPERLGIIGGGNIGLEFAGLYNKL---GSKVTVLDAA 189 (438)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHc---CCeEEEEecC
Confidence 357899999999999999999764 8999999863
No 426
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=65.73 E-value=48 Score=31.43 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=27.3
Q ss_pred eEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCCh
Q 004585 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (744)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~ 421 (744)
||+|+|.|..|..+++.|...+. ..+.++|.|.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv-----~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV-----GKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-----CEEEEEcCCC
Confidence 68999999999999999998653 3677887773
No 427
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=65.70 E-value=22 Score=39.02 Aligned_cols=70 Identities=19% Similarity=0.096 Sum_probs=51.9
Q ss_pred ecC-eEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhcc
Q 004585 381 EKN-HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (744)
Q Consensus 381 ~k~-HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA 456 (744)
.++ -+||.|.+. .|...+++|...+ ..|++.-+|.+..++..++........++.+++.|-++.+..++.
T Consensus 33 ~~~~~~vVTGansGIG~eta~~La~~G------a~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~f 104 (314)
T KOG1208|consen 33 LSGKVALVTGATSGIGFETARELALRG------AHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKF 104 (314)
T ss_pred CCCcEEEEECCCCchHHHHHHHHHhCC------CEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHH
Confidence 444 677888877 5889999998653 678899999877777766654444566788888888888776653
No 428
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=65.69 E-value=12 Score=38.30 Aligned_cols=43 Identities=12% Similarity=0.044 Sum_probs=34.8
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhc
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTD 688 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~ 688 (744)
..++++|.|.|++|..+++.|.+. |.+|++.+.+ .++++.+.+
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~---G~~Vvv~D~~--~~~~~~~~~ 69 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEE---GAKLIVADIN--EEAVARAAE 69 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEcCC--HHHHHHHHH
Confidence 346899999999999999999874 8999988754 566666654
No 429
>PRK06949 short chain dehydrogenase; Provisional
Probab=65.67 E-value=15 Score=37.85 Aligned_cols=79 Identities=14% Similarity=0.061 Sum_probs=52.5
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--- 717 (744)
.++|+|.|+ |.+|..+++.|.+ .|..|.++... .++.+.+.+. ++ . ....+..+.+|.++++.+++.
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~---~G~~Vi~~~r~--~~~~~~~~~~-l~--~-~~~~~~~~~~D~~~~~~~~~~~~~ 79 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQ---AGAKVVLASRR--VERLKELRAE-IE--A-EGGAAHVVSLDVTDYQSIKAAVAH 79 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHHH-HH--h-cCCcEEEEEecCCCHHHHHHHHHH
Confidence 478999998 7899999999976 48888888764 3444443320 00 0 112344688999998877653
Q ss_pred ---CCCCcceEEEec
Q 004585 718 ---PLETFDSMSHWK 729 (744)
Q Consensus 718 ---~I~~~DavIilT 729 (744)
.....|.+|..+
T Consensus 80 ~~~~~~~~d~li~~a 94 (258)
T PRK06949 80 AETEAGTIDILVNNS 94 (258)
T ss_pred HHHhcCCCCEEEECC
Confidence 123568877765
No 430
>PRK07832 short chain dehydrogenase; Provisional
Probab=65.65 E-value=21 Score=37.42 Aligned_cols=79 Identities=14% Similarity=0.127 Sum_probs=51.6
Q ss_pred eEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC-----
Q 004585 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS----- 457 (744)
Q Consensus 384 HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg----- 457 (744)
.++|.|.+. .|..++++|.+.+ ..|++++++++..+...++... .....+.++.+|.++++.++++-
T Consensus 2 ~vlItGas~giG~~la~~la~~G------~~vv~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQG------AELFLTDRDADGLAQTVADARA-LGGTVPEHRALDISDYDAVAAFAADIHA 74 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh-cCCCcceEEEeeCCCHHHHHHHHHHHHH
Confidence 588998765 6889999998643 5688888877666555443211 11223456789999988766421
Q ss_pred -cccccEEEEecC
Q 004585 458 -VSKARAIIVLAS 469 (744)
Q Consensus 458 -I~~A~aVIiltd 469 (744)
....|.+|-.+.
T Consensus 75 ~~~~id~lv~~ag 87 (272)
T PRK07832 75 AHGSMDVVMNIAG 87 (272)
T ss_pred hcCCCCEEEECCC
Confidence 235688887764
No 431
>COG2985 Predicted permease [General function prediction only]
Probab=65.58 E-value=6.9 Score=44.93 Aligned_cols=57 Identities=25% Similarity=0.331 Sum_probs=44.3
Q ss_pred CCccCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 004585 561 WPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (744)
Q Consensus 561 ~p~lvG~tf~El~~~~-~~~iVIGI~r~~~~g~~~lnP~~dtvI~~GD~LiVIa~~~~~~~~ 621 (744)
.|++.|++++|+.... .++++--++| ++...+|++|++++.||++-++|.+++..+.
T Consensus 211 ~p~~~g~~l~d~p~l~~~~v~~sRikr----d~~~~~p~~~~~i~~Gd~l~lVG~~~~l~r~ 268 (544)
T COG2985 211 NPNLDGLNLRDLPILRQEGVYCSRIKR----DGILAVPDPDTIIQVGDELHLVGYPDALARL 268 (544)
T ss_pred CCCccccchhhcccccCCceEEEEEec----CCeeecCCCCcccccCcEEEecCChHHHHHH
Confidence 5789999999998643 3444444554 4567899999999999999999999876553
No 432
>PRK06057 short chain dehydrogenase; Provisional
Probab=65.55 E-value=16 Score=37.79 Aligned_cols=74 Identities=14% Similarity=0.008 Sum_probs=50.9
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--- 717 (744)
.++|+|.|+ |.+|..++++|.+. |.+|.+++..+ ++.+.+.+ .+.. ..+.+|.+|++.+++.
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~---G~~v~~~~r~~--~~~~~~~~------~~~~---~~~~~D~~~~~~~~~~~~~ 72 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAE---GATVVVGDIDP--EAGKAAAD------EVGG---LFVPTDVTDEDAVNALFDT 72 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHc---CCEEEEEeCCH--HHHHHHHH------HcCC---cEEEeeCCCHHHHHHHHHH
Confidence 468999999 78899999999764 89999998643 33443332 1222 2477999998876542
Q ss_pred ---CCCCcceEEEec
Q 004585 718 ---PLETFDSMSHWK 729 (744)
Q Consensus 718 ---~I~~~DavIilT 729 (744)
.....|.+|..+
T Consensus 73 ~~~~~~~id~vi~~a 87 (255)
T PRK06057 73 AAETYGSVDIAFNNA 87 (255)
T ss_pred HHHHcCCCCEEEECC
Confidence 124578887766
No 433
>PRK07063 short chain dehydrogenase; Provisional
Probab=65.48 E-value=19 Score=37.33 Aligned_cols=81 Identities=5% Similarity=0.046 Sum_probs=52.9
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--- 717 (744)
.++++|.|+ +.+|..+++.|.+ .|.+|.++... +++.+.+.+. +.. .-.+..+..+.+|.+|++.+++.
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~---~G~~vv~~~r~--~~~~~~~~~~-~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAR---EGAAVALADLD--AALAERAAAA-IAR-DVAGARVLAVPADVTDAASVAAAVAA 79 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHHH-HHh-ccCCceEEEEEccCCCHHHHHHHHHH
Confidence 467999998 5789999999976 48999998864 3444433320 000 00123455688999999877652
Q ss_pred ---CCCCcceEEEec
Q 004585 718 ---PLETFDSMSHWK 729 (744)
Q Consensus 718 ---~I~~~DavIilT 729 (744)
..+..|.+|-.+
T Consensus 80 ~~~~~g~id~li~~a 94 (260)
T PRK07063 80 AEEAFGPLDVLVNNA 94 (260)
T ss_pred HHHHhCCCcEEEECC
Confidence 124678888765
No 434
>PRK06125 short chain dehydrogenase; Provisional
Probab=65.43 E-value=23 Score=36.72 Aligned_cols=80 Identities=18% Similarity=0.152 Sum_probs=53.1
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC--cc
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--VS 459 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--I~ 459 (744)
..++|.|.+. .|..++++|...+ ..|++++++++..++..+++.. ..+.++.++..|.++++.++++- ..
T Consensus 8 k~vlItG~~~giG~~ia~~l~~~G------~~V~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~~D~~~~~~~~~~~~~~g 80 (259)
T PRK06125 8 KRVLITGASKGIGAAAAEAFAAEG------CHLHLVARDADALEALAADLRA-AHGVDVAVHALDLSSPEAREQLAAEAG 80 (259)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHh-hcCCceEEEEecCCCHHHHHHHHHHhC
Confidence 5778888754 6899999998643 5788888887766654433211 11345778889999988776531 23
Q ss_pred cccEEEEecC
Q 004585 460 KARAIIVLAS 469 (744)
Q Consensus 460 ~A~aVIiltd 469 (744)
..|.+|-...
T Consensus 81 ~id~lv~~ag 90 (259)
T PRK06125 81 DIDILVNNAG 90 (259)
T ss_pred CCCEEEECCC
Confidence 5677766554
No 435
>PLN02206 UDP-glucuronate decarboxylase
Probab=65.42 E-value=21 Score=40.92 Aligned_cols=73 Identities=12% Similarity=0.080 Sum_probs=49.1
Q ss_pred CCceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCC
Q 004585 641 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (744)
Q Consensus 641 ~~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I 719 (744)
...||+|.|+ |-+|..+++.|.+ .|.+|..++.... .+.+.+.. .+.+..+..+.||..+...
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~---~G~~V~~ld~~~~-~~~~~~~~------~~~~~~~~~i~~D~~~~~l------ 181 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMA---RGDSVIVVDNFFT-GRKENVMH------HFSNPNFELIRHDVVEPIL------ 181 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHH---CcCEEEEEeCCCc-cchhhhhh------hccCCceEEEECCccChhh------
Confidence 4468999998 8999999999976 4889998875321 22222211 1223334557899877643
Q ss_pred CCcceEEEec
Q 004585 720 ETFDSMSHWK 729 (744)
Q Consensus 720 ~~~DavIilT 729 (744)
..+|.|+=++
T Consensus 182 ~~~D~ViHlA 191 (442)
T PLN02206 182 LEVDQIYHLA 191 (442)
T ss_pred cCCCEEEEee
Confidence 3579988877
No 436
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=65.35 E-value=30 Score=35.19 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=29.0
Q ss_pred ecCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCCh
Q 004585 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (744)
Q Consensus 381 ~k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~ 421 (744)
.+-||+|+|.|..|..+++.|...+- ..+.++|.|.
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GV-----g~i~lvD~d~ 53 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGI-----DSITIVDHRL 53 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEECCc
Confidence 45699999999999999999998753 3577777663
No 437
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=65.34 E-value=17 Score=38.24 Aligned_cols=86 Identities=14% Similarity=0.092 Sum_probs=54.0
Q ss_pred eEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCch----HHHHHhh--cCCCC---------cCCCCCceEEEEEcCc
Q 004585 644 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEK----EREKKLT--DGGLD---------ISGLMNIKLVHREGNA 708 (744)
Q Consensus 644 rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~----er~~~l~--~~g~~---------~~~L~n~~V~~i~GD~ 708 (744)
||+|+|.|..|..+++.|... + =-++++++.+..+ .|.-.+. +-|-. ....+++.+..++++.
T Consensus 1 kVlvvG~GGlG~eilk~La~~-G-vg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i 78 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-G-FGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKV 78 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-C-CCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence 589999999999999999753 1 2468888865221 1111110 00100 0123577777788887
Q ss_pred CCHhhHhcCCCCCcceEEEecCc
Q 004585 709 VIRRHLESLPLETFDSMSHWKTR 731 (744)
Q Consensus 709 td~~~L~e~~I~~~DavIilTde 731 (744)
.+++.+...-++.+|.||...|.
T Consensus 79 ~~~~~~~~~f~~~~DvVi~a~Dn 101 (234)
T cd01484 79 GPEQDFNDTFFEQFHIIVNALDN 101 (234)
T ss_pred ChhhhchHHHHhCCCEEEECCCC
Confidence 66555444457889999988764
No 438
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=65.24 E-value=19 Score=37.47 Aligned_cols=76 Identities=13% Similarity=0.120 Sum_probs=52.0
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--- 717 (744)
.++++|.|+ +.+|..+++.|.+ .|.+|.++... +++.+.+.+ .+.. .+..+++|.+|.+.++++
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~---~G~~V~~~~r~--~~~~~~~~~------~~~~-~~~~~~~D~~~~~~~~~~~~~ 73 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLA---EGARVAVLERS--AEKLASLRQ------RFGD-HVLVVEGDVTSYADNQRAVDQ 73 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHH------HhCC-cceEEEccCCCHHHHHHHHHH
Confidence 468999998 4689999999986 48999998864 455555544 2221 244588999998876542
Q ss_pred ---CCCCcceEEEec
Q 004585 718 ---PLETFDSMSHWK 729 (744)
Q Consensus 718 ---~I~~~DavIilT 729 (744)
..+..|.+|-.+
T Consensus 74 ~~~~~g~id~li~~a 88 (263)
T PRK06200 74 TVDAFGKLDCFVGNA 88 (263)
T ss_pred HHHhcCCCCEEEECC
Confidence 234567776544
No 439
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=65.17 E-value=25 Score=40.10 Aligned_cols=74 Identities=12% Similarity=0.109 Sum_probs=51.7
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHH-HHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCC
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKERE-KKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~-~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~I 719 (744)
.++++|.|+ |.+|..++++|.+ .|.+|.++...+ ++. +.+.+ . ...+..+.+|.+|++.+++. +
T Consensus 178 gK~VLITGASgGIG~aLA~~La~---~G~~Vi~l~r~~--~~l~~~~~~------~--~~~v~~v~~Dvsd~~~v~~~-l 243 (406)
T PRK07424 178 GKTVAVTGASGTLGQALLKELHQ---QGAKVVALTSNS--DKITLEING------E--DLPVKTLHWQVGQEAALAEL-L 243 (406)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHhh------c--CCCeEEEEeeCCCHHHHHHH-h
Confidence 358999998 6799999999976 488999888643 322 22221 0 11233578999999988765 5
Q ss_pred CCcceEEEec
Q 004585 720 ETFDSMSHWK 729 (744)
Q Consensus 720 ~~~DavIilT 729 (744)
+..|.+|..+
T Consensus 244 ~~IDiLInnA 253 (406)
T PRK07424 244 EKVDILIINH 253 (406)
T ss_pred CCCCEEEECC
Confidence 6789888754
No 440
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=65.12 E-value=24 Score=36.42 Aligned_cols=80 Identities=13% Similarity=0.148 Sum_probs=52.4
Q ss_pred cCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC---
Q 004585 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (744)
Q Consensus 382 k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (744)
.+.++|.|.+. .|..++++|...+ ..|++++++.+..+...++... .+.++.++..|.++.+.++++-
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~G------~~vv~~~r~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~i~~~~~~~ 82 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATAG------ASVVVSDINADAANHVVDEIQQ--LGGQAFACRCDITSEQELSALADFA 82 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------CeEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHH
Confidence 45677788765 5889999998653 5677788777665554433211 1335778889999998876531
Q ss_pred ---cccccEEEEecC
Q 004585 458 ---VSKARAIIVLAS 469 (744)
Q Consensus 458 ---I~~A~aVIiltd 469 (744)
..+-|.+|-++.
T Consensus 83 ~~~~~~~d~li~~ag 97 (255)
T PRK06113 83 LSKLGKVDILVNNAG 97 (255)
T ss_pred HHHcCCCCEEEECCC
Confidence 124577777664
No 441
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=65.10 E-value=9.2 Score=42.79 Aligned_cols=36 Identities=11% Similarity=0.084 Sum_probs=31.1
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCc
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPE 679 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~ 679 (744)
...+|+|+|+|..|..+|-.|.+. |.+|+|+|..+.
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~---G~~v~v~E~~~~ 52 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDS---GLRIALIEAQPA 52 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcC---CCEEEEEecCCc
Confidence 345899999999999999999864 999999998653
No 442
>PLN02686 cinnamoyl-CoA reductase
Probab=65.09 E-value=19 Score=40.09 Aligned_cols=80 Identities=13% Similarity=0.061 Sum_probs=50.6
Q ss_pred ecCeEEEEccc-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhh-cc---cCCCcEEEEEeCCCCHHHHhc
Q 004585 381 EKNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLE-FD---FMGTSVICRSGSPLILADLKK 455 (744)
Q Consensus 381 ~k~HIII~G~g-~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~-~~---~~~~~V~~i~Gd~t~~e~L~r 455 (744)
....|+|.|.. -.|..+++.|...+ +.|+++.++.+..+.+ .++. +. ....++.++.||.++.+.+.+
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~~G------~~V~~~~r~~~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~ 124 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLRHG------YSVRIAVDTQEDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPESLHE 124 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHH-HHHhhhccccccCCceEEEEcCCCCHHHHHH
Confidence 35679999975 46999999998754 5666655554443332 1110 00 001247889999999998877
Q ss_pred cCcccccEEEEec
Q 004585 456 VSVSKARAIIVLA 468 (744)
Q Consensus 456 AgI~~A~aVIilt 468 (744)
+ ++.++.++-++
T Consensus 125 ~-i~~~d~V~hlA 136 (367)
T PLN02686 125 A-FDGCAGVFHTS 136 (367)
T ss_pred H-HHhccEEEecC
Confidence 5 55677776543
No 443
>PRK06940 short chain dehydrogenase; Provisional
Probab=64.99 E-value=14 Score=39.00 Aligned_cols=75 Identities=13% Similarity=0.155 Sum_probs=50.4
Q ss_pred ceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCC--CCceEEEEEcCcCCHhhHhcC---
Q 004585 643 EKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGL--MNIKLVHREGNAVIRRHLESL--- 717 (744)
Q Consensus 643 ~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L--~n~~V~~i~GD~td~~~L~e~--- 717 (744)
+.++|-|.|.+|..+++.|. .|.+|.+++..+ ++.+.+.+ ++ .+..+..+.+|.+|++.+++.
T Consensus 3 k~~lItGa~gIG~~la~~l~----~G~~Vv~~~r~~--~~~~~~~~------~l~~~~~~~~~~~~Dv~d~~~i~~~~~~ 70 (275)
T PRK06940 3 EVVVVIGAGGIGQAIARRVG----AGKKVLLADYNE--ENLEAAAK------TLREAGFDVSTQEVDVSSRESVKALAAT 70 (275)
T ss_pred CEEEEECCChHHHHHHHHHh----CCCEEEEEeCCH--HHHHHHHH------HHHhcCCeEEEEEeecCCHHHHHHHHHH
Confidence 46888888999999999984 388999998643 33333322 11 123455688999998876542
Q ss_pred --CCCCcceEEEec
Q 004585 718 --PLETFDSMSHWK 729 (744)
Q Consensus 718 --~I~~~DavIilT 729 (744)
.....|.+|-.+
T Consensus 71 ~~~~g~id~li~nA 84 (275)
T PRK06940 71 AQTLGPVTGLVHTA 84 (275)
T ss_pred HHhcCCCCEEEECC
Confidence 124578888755
No 444
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=64.90 E-value=22 Score=37.11 Aligned_cols=63 Identities=11% Similarity=0.087 Sum_probs=41.6
Q ss_pred CeEEEEccc---ccHHHHHHHHHHhcccCCCCeEEEEEcC---ChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhc
Q 004585 383 NHILILGWS---DKLGSLLKQLAVANKSIGGGVIVVLAER---DKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (744)
Q Consensus 383 ~HIII~G~g---~~g~~Ll~eL~~~~~~~~~~~iVVLid~---d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~r 455 (744)
..++|.|.+ ..|..++++|.+.+ ..|+++.+ +++.++++.++. .+.++.++..|.++++..++
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~G------~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~Dv~d~~~v~~ 76 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNAG------AKLVFTYAGERLEKEVRELADTL----EGQESLLLPCDVTSDEEITA 76 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCC------CEEEEecCcccchHHHHHHHHHc----CCCceEEEecCCCCHHHHHH
Confidence 478899984 68999999998753 56777754 334455443321 23356677788888777654
No 445
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=64.89 E-value=12 Score=41.00 Aligned_cols=40 Identities=10% Similarity=0.047 Sum_probs=33.1
Q ss_pred eEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhc
Q 004585 644 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTD 688 (744)
Q Consensus 644 rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~ 688 (744)
+|.|+|.|..|..++..|.+. |.+|++++.. +++.+.+.+
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~---G~~V~~~~r~--~~~~~~i~~ 45 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASK---GVPVRLWARR--PEFAAALAA 45 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHC---CCeEEEEeCC--HHHHHHHHH
Confidence 799999999999999999763 8899999964 466666654
No 446
>PRK08339 short chain dehydrogenase; Provisional
Probab=64.87 E-value=15 Score=38.44 Aligned_cols=80 Identities=15% Similarity=0.090 Sum_probs=52.0
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--- 717 (744)
.+.++|.|+ +.+|..+++.|.+ .|.+|.+++.+ .++.+.+.+. + ....+..+..+.+|.+|++.+++.
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~---~G~~V~~~~r~--~~~~~~~~~~-~--~~~~~~~~~~~~~Dv~~~~~i~~~~~~ 79 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLAR---AGADVILLSRN--EENLKKAREK-I--KSESNVDVSYIVADLTKREDLERTVKE 79 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHHH-H--HhhcCCceEEEEecCCCHHHHHHHHHH
Confidence 357899998 4699999999986 48999998764 3444443320 0 011123455689999999877642
Q ss_pred --CCCCcceEEEec
Q 004585 718 --PLETFDSMSHWK 729 (744)
Q Consensus 718 --~I~~~DavIilT 729 (744)
..+..|.+|..+
T Consensus 80 ~~~~g~iD~lv~na 93 (263)
T PRK08339 80 LKNIGEPDIFFFST 93 (263)
T ss_pred HHhhCCCcEEEECC
Confidence 124567777554
No 447
>PRK08628 short chain dehydrogenase; Provisional
Probab=64.86 E-value=21 Score=36.84 Aligned_cols=78 Identities=12% Similarity=0.031 Sum_probs=51.2
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCc---
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI--- 458 (744)
..++|.|.+. .|..++++|.+.+ ..|+++.++++.. +..++.. ..+.++.++.+|.++++.++++--
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G------~~v~~~~r~~~~~-~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEG------AIPVIFGRSAPDD-EFAEELR--ALQPRAEFVQVDLTDDAQCRDAVEQTV 78 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcC------CcEEEEcCChhhH-HHHHHHH--hcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 5788888754 6899999998653 4677777766543 2222211 013457889999999988776321
Q ss_pred ---ccccEEEEecC
Q 004585 459 ---SKARAIIVLAS 469 (744)
Q Consensus 459 ---~~A~aVIiltd 469 (744)
...|.+|-.+.
T Consensus 79 ~~~~~id~vi~~ag 92 (258)
T PRK08628 79 AKFGRIDGLVNNAG 92 (258)
T ss_pred HhcCCCCEEEECCc
Confidence 24577777765
No 448
>PRK05717 oxidoreductase; Validated
Probab=64.82 E-value=24 Score=36.43 Aligned_cols=77 Identities=14% Similarity=0.012 Sum_probs=52.5
Q ss_pred CCceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC--
Q 004585 641 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-- 717 (744)
Q Consensus 641 ~~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~-- 717 (744)
..++++|.|+ |.+|..+++.|.+ .|.+|.+++..+ ++.+.+.+ .+. ..+..+.+|.+|.+.++++
T Consensus 9 ~~k~vlItG~sg~IG~~~a~~l~~---~g~~v~~~~~~~--~~~~~~~~------~~~-~~~~~~~~Dl~~~~~~~~~~~ 76 (255)
T PRK05717 9 NGRVALVTGAARGIGLGIAAWLIA---EGWQVVLADLDR--ERGSKVAK------ALG-ENAWFIAMDVADEAQVAAGVA 76 (255)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHH---cCCEEEEEcCCH--HHHHHHHH------HcC-CceEEEEccCCCHHHHHHHHH
Confidence 3468999998 6899999999976 488999987542 34444332 121 2344689999998876431
Q ss_pred ----CCCCcceEEEec
Q 004585 718 ----PLETFDSMSHWK 729 (744)
Q Consensus 718 ----~I~~~DavIilT 729 (744)
.....|.+|-.+
T Consensus 77 ~~~~~~g~id~li~~a 92 (255)
T PRK05717 77 EVLGQFGRLDALVCNA 92 (255)
T ss_pred HHHHHhCCCCEEEECC
Confidence 124579888776
No 449
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=64.82 E-value=18 Score=39.08 Aligned_cols=68 Identities=9% Similarity=-0.089 Sum_probs=46.4
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCH--hhHhcCCC
Q 004585 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIR--RHLESLPL 719 (744)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~--~~L~e~~I 719 (744)
..+|.|+|.|.+|..+++.|.+. |..+.++..+...+.++.-.+ .+..|+ +....+.+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~---g~~v~i~g~d~~~~~~~~a~~-----------------lgv~d~~~~~~~~~~~ 62 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEA---GLVVRIIGRDRSAATLKAALE-----------------LGVIDELTVAGLAEAA 62 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHc---CCeEEEEeecCcHHHHHHHhh-----------------cCcccccccchhhhhc
Confidence 35899999999999999999874 888888888665555444322 222232 12223446
Q ss_pred CCcceEEEec
Q 004585 720 ETFDSMSHWK 729 (744)
Q Consensus 720 ~~~DavIilT 729 (744)
.++|.||+.+
T Consensus 63 ~~aD~Vivav 72 (279)
T COG0287 63 AEADLVIVAV 72 (279)
T ss_pred ccCCEEEEec
Confidence 7788888776
No 450
>PLN02240 UDP-glucose 4-epimerase
Probab=64.73 E-value=19 Score=39.24 Aligned_cols=77 Identities=17% Similarity=0.214 Sum_probs=0.0
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEcc--CCchHHHHHhhcCCCCcCCCC--CceEEEEEcCcCCHhhHhcC
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNE--VPEKEREKKLTDGGLDISGLM--NIKLVHREGNAVIRRHLESL 717 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~--~p~~er~~~l~~~g~~~~~L~--n~~V~~i~GD~td~~~L~e~ 717 (744)
++|+|.|+ |-+|..+++.|.+. |.+|++++. .+..+..+.+.+ ... ...+.++.||.+|++.++++
T Consensus 6 ~~vlItGatG~iG~~l~~~L~~~---g~~V~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~D~~~~~~l~~~ 76 (352)
T PLN02240 6 RTILVTGGAGYIGSHTVLQLLLA---GYKVVVIDNLDNSSEEALRRVKE------LAGDLGDNLVFHKVDLRDKEALEKV 76 (352)
T ss_pred CEEEEECCCChHHHHHHHHHHHC---CCEEEEEeCCCcchHHHHHHHHH------hhcccCccceEEecCcCCHHHHHHH
Q ss_pred CCC--CcceEEEec
Q 004585 718 PLE--TFDSMSHWK 729 (744)
Q Consensus 718 ~I~--~~DavIilT 729 (744)
++ ..|.|+-++
T Consensus 77 -~~~~~~d~vih~a 89 (352)
T PLN02240 77 -FASTRFDAVIHFA 89 (352)
T ss_pred -HHhCCCCEEEEcc
No 451
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=64.68 E-value=19 Score=38.57 Aligned_cols=41 Identities=22% Similarity=0.178 Sum_probs=33.4
Q ss_pred eEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCC
Q 004585 644 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGG 690 (744)
Q Consensus 644 rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g 690 (744)
+|.|+|.|.+|..++..|.+. |.+|++++. +++.+.+.+.|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~---g~~V~~~~r---~~~~~~~~~~g 42 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA---GRDVTFLVR---PKRAKALRERG 42 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC---CCceEEEec---HHHHHHHHhCC
Confidence 699999999999999999864 889999985 36666666544
No 452
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=64.66 E-value=32 Score=36.69 Aligned_cols=80 Identities=13% Similarity=0.083 Sum_probs=44.7
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCch-HHHHHh-hcCCCCcCCCCCceEEEEEcCcCCHhhHhcCC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEK-EREKKL-TDGGLDISGLMNIKLVHREGNAVIRRHLESLP 718 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~-er~~~l-~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~~ 718 (744)
.+++||++|+|.-+ +++++.++ .+..+++++|.++.- +.+++. ... . ..+++..+..+++|+. +.|++.
T Consensus 72 ~p~~VL~iG~G~G~--~~~~ll~~-~~~~~v~~veid~~vi~~a~~~~~~~--~-~~~~~~~v~i~~~D~~--~~l~~~- 142 (270)
T TIGR00417 72 NPKHVLVIGGGDGG--VLREVLKH-KSVEKATLVDIDEKVIELSKKFLPSL--A-GSYDDPRVDLQIDDGF--KFLADT- 142 (270)
T ss_pred CCCEEEEEcCCchH--HHHHHHhC-CCcceEEEEeCCHHHHHHHHHHhHhh--c-ccccCCceEEEECchH--HHHHhC-
Confidence 45699999998754 34444333 234689999975421 112221 110 0 1233334555678773 455554
Q ss_pred CCCcceEEEec
Q 004585 719 LETFDSMSHWK 729 (744)
Q Consensus 719 I~~~DavIilT 729 (744)
-+.||.||+=.
T Consensus 143 ~~~yDvIi~D~ 153 (270)
T TIGR00417 143 ENTFDVIIVDS 153 (270)
T ss_pred CCCccEEEEeC
Confidence 36899998743
No 453
>PRK06125 short chain dehydrogenase; Provisional
Probab=64.66 E-value=19 Score=37.26 Aligned_cols=80 Identities=13% Similarity=0.118 Sum_probs=51.7
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC--C
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--P 718 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--~ 718 (744)
.+.++|.|+ +.+|..+++.|.+ .|.+|.++...+ ++.+.+.+. + .......+..+.+|.+|++.+++. .
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~---~G~~V~~~~r~~--~~~~~~~~~-l--~~~~~~~~~~~~~D~~~~~~~~~~~~~ 78 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAA---EGCHLHLVARDA--DALEALAAD-L--RAAHGVDVAVHALDLSSPEAREQLAAE 78 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---cCCEEEEEeCCH--HHHHHHHHH-H--HhhcCCceEEEEecCCCHHHHHHHHHH
Confidence 368999998 5789999999976 488999988643 343332220 0 001123344578999998876541 2
Q ss_pred CCCcceEEEec
Q 004585 719 LETFDSMSHWK 729 (744)
Q Consensus 719 I~~~DavIilT 729 (744)
....|.+|...
T Consensus 79 ~g~id~lv~~a 89 (259)
T PRK06125 79 AGDIDILVNNA 89 (259)
T ss_pred hCCCCEEEECC
Confidence 45678887654
No 454
>PLN00198 anthocyanidin reductase; Provisional
Probab=64.61 E-value=21 Score=38.75 Aligned_cols=80 Identities=14% Similarity=0.088 Sum_probs=50.9
Q ss_pred cCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCC-CcEEEEEeCCCCHHHHhccCcc
Q 004585 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMG-TSVICRSGSPLILADLKKVSVS 459 (744)
Q Consensus 382 k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~-~~V~~i~Gd~t~~e~L~rAgI~ 459 (744)
...|+|.|.+. .|..++++|...+ +.|+++.++.+....... .. .+.. .++.++.||.++.+.+.++ ++
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g------~~V~~~~r~~~~~~~~~~-~~-~~~~~~~~~~~~~Dl~d~~~~~~~-~~ 79 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKG------YAVNTTVRDPENQKKIAH-LR-ALQELGDLKIFGADLTDEESFEAP-IA 79 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCC------CEEEEEECCCCCHHHHHH-HH-hcCCCCceEEEEcCCCChHHHHHH-Hh
Confidence 45799999654 6999999998754 455544444322211110 00 0011 2578899999999988775 45
Q ss_pred cccEEEEecCC
Q 004585 460 KARAIIVLASD 470 (744)
Q Consensus 460 ~A~aVIiltdd 470 (744)
++|.||-++..
T Consensus 80 ~~d~vih~A~~ 90 (338)
T PLN00198 80 GCDLVFHVATP 90 (338)
T ss_pred cCCEEEEeCCC
Confidence 68999988864
No 455
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=64.41 E-value=17 Score=37.46 Aligned_cols=79 Identities=13% Similarity=0.080 Sum_probs=49.9
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC----
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~---- 717 (744)
+.++|.|+ |.+|..+++.|.+. |.+|.++...+.++..+...+. +-.+..+..+.+|.+|++.++++
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~---g~~vi~~~r~~~~~~~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAA---GFDLAINDRPDDEELAATQQEL-----RALGVEVIFFPADVADLSAHEAMLDAA 74 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHC---CCEEEEEecCchhHHHHHHHHH-----HhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 56899898 67899999999864 8899888754322211111110 00122355688999998876542
Q ss_pred --CCCCcceEEEec
Q 004585 718 --PLETFDSMSHWK 729 (744)
Q Consensus 718 --~I~~~DavIilT 729 (744)
.....|.+|..+
T Consensus 75 ~~~~~~id~vi~~a 88 (256)
T PRK12745 75 QAAWGRIDCLVNNA 88 (256)
T ss_pred HHhcCCCCEEEECC
Confidence 124678888765
No 456
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=64.39 E-value=7.4 Score=38.66 Aligned_cols=65 Identities=18% Similarity=0.261 Sum_probs=39.5
Q ss_pred cCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChH-HHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCccc
Q 004585 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKE-EMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (744)
Q Consensus 382 k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e-~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (744)
...|.|+|||..|..-+..|+... ..|++..++.. ..+++.++ +.. ..+..+| +++
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG------~~V~Vglr~~s~s~~~A~~~--------Gf~--------v~~~~eA-v~~ 60 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSG------VNVIVGLREGSASWEKAKAD--------GFE--------VMSVAEA-VKK 60 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-------EEEEEE-TTCHHHHHHHHT--------T-E--------CCEHHHH-HHC
T ss_pred CCEEEEECCChHHHHHHHHHHhCC------CCEEEEecCCCcCHHHHHHC--------CCe--------eccHHHH-Hhh
Confidence 457899999999999999998643 66777765543 44444321 221 1244555 778
Q ss_pred ccEEEEecC
Q 004585 461 ARAIIVLAS 469 (744)
Q Consensus 461 A~aVIiltd 469 (744)
||.|+++++
T Consensus 61 aDvV~~L~P 69 (165)
T PF07991_consen 61 ADVVMLLLP 69 (165)
T ss_dssp -SEEEE-S-
T ss_pred CCEEEEeCC
Confidence 999999996
No 457
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=64.32 E-value=13 Score=37.32 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=32.6
Q ss_pred eEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHh
Q 004585 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAK 430 (744)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~ 430 (744)
+|-|+|.|..|..++..+...+ +.|++.|.+++.++...++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G------~~V~l~d~~~~~l~~~~~~ 41 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG------YEVTLYDRSPEALERARKR 41 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT------SEEEEE-SSHHHHHHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCC------CcEEEEECChHHHHhhhhH
Confidence 5889999999999999998754 8999999999887766543
No 458
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=64.29 E-value=27 Score=36.83 Aligned_cols=87 Identities=13% Similarity=-0.000 Sum_probs=52.1
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCC-CEEEEEccCCc----hHHHHHhh--cCCCC---------cCCCCCceEEEE
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPE----KEREKKLT--DGGLD---------ISGLMNIKLVHR 704 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g-s~v~IIe~~p~----~er~~~l~--~~g~~---------~~~L~n~~V~~i 704 (744)
...+|+|+|.|..|..+++.|... | .++++++.+-- -.|.-... +.|-. ...-+++.+..+
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~---Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~ 107 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAA---GVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETI 107 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHc---CCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 456999999999999999999863 4 47888886421 11111100 00100 012256676666
Q ss_pred EcCcCCHhhHhcCCCCCcceEEEecCch
Q 004585 705 EGNAVIRRHLESLPLETFDSMSHWKTRL 732 (744)
Q Consensus 705 ~GD~td~~~L~e~~I~~~DavIilTde~ 732 (744)
....+. +.+.+ -+.++|.||..+|..
T Consensus 108 ~~~i~~-~~~~~-~~~~~DiVi~~~D~~ 133 (245)
T PRK05690 108 NARLDD-DELAA-LIAGHDLVLDCTDNV 133 (245)
T ss_pred eccCCH-HHHHH-HHhcCCEEEecCCCH
Confidence 655543 33332 267899999988643
No 459
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=64.27 E-value=31 Score=40.76 Aligned_cols=70 Identities=19% Similarity=0.161 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHh-hhhhh-------ccC--CCHHHHHHHHHHhhhcCCCC--CC-CCCccChhhhhHHHHHH-HHHHH
Q 004585 290 ALLFATIFLIIFGG-LALYA-------VSD--SSFAEALWLSWTFVADSGNH--AD-RVGTGPRIVSVSISSGG-MLIFA 355 (744)
Q Consensus 290 ~L~~~~l~lil~g~-l~~~~-------ie~--~s~~dA~y~~~~tltTvGyg--d~-~~t~~gRi~~v~lil~G-i~i~a 355 (744)
.++++..+++++++ +.+.. .|+ .+|.+.+|-+...+.|+|.. .. +.+..+++...++|+.| ++.+.
T Consensus 418 ~vilv~~~lVl~~taial~~~~~~~~~~n~g~hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iGR~Gpit 497 (559)
T PRK05482 418 LAILVHPLLVLVGTALALATPAGRAGISNPGPHGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLGRFLPII 497 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccCCCCCCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555 33323 232 58999999999999999863 23 46778999988888887 44444
Q ss_pred HHHH
Q 004585 356 MMLG 359 (744)
Q Consensus 356 ~lig 359 (744)
..++
T Consensus 498 ~~lA 501 (559)
T PRK05482 498 PVLA 501 (559)
T ss_pred HHHH
Confidence 4444
No 460
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=64.27 E-value=13 Score=43.95 Aligned_cols=35 Identities=9% Similarity=0.028 Sum_probs=29.9
Q ss_pred CCCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccC
Q 004585 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (744)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~ 677 (744)
...++|+|+|+|..|...+..|.+. |.+|+++|..
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~---G~~V~v~e~~ 169 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRM---GHAVTIFEAG 169 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC---CCeEEEEecC
Confidence 4567999999999999999999764 8899999953
No 461
>PRK07806 short chain dehydrogenase; Provisional
Probab=64.23 E-value=25 Score=36.04 Aligned_cols=79 Identities=22% Similarity=0.143 Sum_probs=49.6
Q ss_pred CeEEEEccc-ccHHHHHHHHHHhcccCCCCeEEEEEcCCh-HHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC---
Q 004585 383 NHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (744)
Q Consensus 383 ~HIII~G~g-~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~-e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (744)
..++|+|.+ ..|..++++|...+ +.|+++.++. +..+....++.. .+.++.++.+|.++++.++++-
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G------~~V~~~~r~~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAG------AHVVVNYRQKAPRANKVVAEIEA--AGGRASAVGADLTDEESVAALMDTA 78 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCC------CEEEEEeCCchHhHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHH
Confidence 468899974 57999999998653 5666666543 233333222110 1345788999999999876531
Q ss_pred ---cccccEEEEecC
Q 004585 458 ---VSKARAIIVLAS 469 (744)
Q Consensus 458 ---I~~A~aVIiltd 469 (744)
....|.+|..+.
T Consensus 79 ~~~~~~~d~vi~~ag 93 (248)
T PRK07806 79 REEFGGLDALVLNAS 93 (248)
T ss_pred HHhCCCCcEEEECCC
Confidence 124577776653
No 462
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=64.19 E-value=20 Score=37.04 Aligned_cols=79 Identities=14% Similarity=0.117 Sum_probs=52.3
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--- 717 (744)
.++++|.|+ |.+|..+++.|.+ .|..|.++...+ ++.+.+.+. + .-.+..+..+.+|.+|++.+++.
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~---~G~~V~~~~r~~--~~~~~~~~~-i---~~~~~~~~~~~~Dl~d~~~i~~~~~~ 82 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGE---AGARVVLSARKA--EELEEAAAH-L---EALGIDALWIAADVADEADIERLAEE 82 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---cCCEEEEEeCCH--HHHHHHHHH-H---HhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 468999997 6789999999976 488999988653 332222210 0 00123355689999999888431
Q ss_pred ---CCCCcceEEEec
Q 004585 718 ---PLETFDSMSHWK 729 (744)
Q Consensus 718 ---~I~~~DavIilT 729 (744)
.....|.+|-.+
T Consensus 83 ~~~~~~~id~vi~~a 97 (259)
T PRK08213 83 TLERFGHVDILVNNA 97 (259)
T ss_pred HHHHhCCCCEEEECC
Confidence 124578888876
No 463
>PRK12746 short chain dehydrogenase; Provisional
Probab=64.08 E-value=31 Score=35.48 Aligned_cols=79 Identities=13% Similarity=0.002 Sum_probs=0.0
Q ss_pred CCceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCC--CceEEEEEcCcCCHhhHhc-
Q 004585 641 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM--NIKLVHREGNAVIRRHLES- 716 (744)
Q Consensus 641 ~~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~--n~~V~~i~GD~td~~~L~e- 716 (744)
..++++|.|+ |.+|..+++.|.+. |..|.++.. ++.++.+.+.+ .+. +..+.++++|.+|++.+++
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~---G~~v~i~~~-r~~~~~~~~~~------~~~~~~~~~~~~~~D~~d~~~i~~~ 74 (254)
T PRK12746 5 DGKVALVTGASRGIGRAIAMRLAND---GALVAIHYG-RNKQAADETIR------EIESNGGKAFLIEADLNSIDGVKKL 74 (254)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC---CCEEEEEcC-CCHHHHHHHHH------HHHhcCCcEEEEEcCcCCHHHHHHH
Q ss_pred -----------CCCCCcceEEEec
Q 004585 717 -----------LPLETFDSMSHWK 729 (744)
Q Consensus 717 -----------~~I~~~DavIilT 729 (744)
.+-...|.+|...
T Consensus 75 ~~~~~~~~~~~~~~~~id~vi~~a 98 (254)
T PRK12746 75 VEQLKNELQIRVGTSEIDILVNNA 98 (254)
T ss_pred HHHHHHHhccccCCCCccEEEECC
No 464
>PLN02366 spermidine synthase
Probab=63.87 E-value=60 Score=35.57 Aligned_cols=82 Identities=23% Similarity=0.261 Sum_probs=51.7
Q ss_pred ecCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhh---cccCCCcEEEEEeCCCCHHHHhccC
Q 004585 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLE---FDFMGTSVICRSGSPLILADLKKVS 457 (744)
Q Consensus 381 ~k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~---~~~~~~~V~~i~Gd~t~~e~L~rAg 457 (744)
...+|+|+|.|.- .+++++.... ....|+++|.|++-++...+.+. ..+.+.++.++.||+.. .+++..
T Consensus 91 ~pkrVLiIGgG~G--~~~rellk~~----~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~--~l~~~~ 162 (308)
T PLN02366 91 NPKKVLVVGGGDG--GVLREIARHS----SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVE--FLKNAP 162 (308)
T ss_pred CCCeEEEEcCCcc--HHHHHHHhCC----CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHH--HHhhcc
Confidence 3568999999973 3567776432 22468899999876664433221 11345579999999754 233332
Q ss_pred cccccEEEEecCC
Q 004585 458 VSKARAIIVLASD 470 (744)
Q Consensus 458 I~~A~aVIiltdd 470 (744)
-++-|.||+...+
T Consensus 163 ~~~yDvIi~D~~d 175 (308)
T PLN02366 163 EGTYDAIIVDSSD 175 (308)
T ss_pred CCCCCEEEEcCCC
Confidence 3468999986644
No 465
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=63.84 E-value=19 Score=39.44 Aligned_cols=78 Identities=19% Similarity=0.068 Sum_probs=51.2
Q ss_pred CeEEEEcc-cccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCcc-c
Q 004585 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS-K 460 (744)
Q Consensus 383 ~HIII~G~-g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~-~ 460 (744)
.+|+|.|. |-.|..+++.|...+ +.|+.+++++........... ...++.++.||.++.+.++++--+ +
T Consensus 5 k~ilItGatG~IG~~l~~~L~~~G------~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLELG------AEVYGYSLDPPTSPNLFELLN---LAKKIEDHFGDIRDAAKLRKAIAEFK 75 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHHCC------CEEEEEeCCCccchhHHHHHh---hcCCceEEEccCCCHHHHHHHHhhcC
Confidence 57999997 557999999998754 567777766543222211110 022467789999999988765221 3
Q ss_pred ccEEEEecC
Q 004585 461 ARAIIVLAS 469 (744)
Q Consensus 461 A~aVIiltd 469 (744)
.|.||-++.
T Consensus 76 ~d~vih~A~ 84 (349)
T TIGR02622 76 PEIVFHLAA 84 (349)
T ss_pred CCEEEECCc
Confidence 588887775
No 466
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=63.71 E-value=18 Score=39.10 Aligned_cols=77 Identities=8% Similarity=0.028 Sum_probs=48.4
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCc-hHHHHHhhcCCCCcCCCCC---ceEEEEEcCcCCHhhHhcC
Q 004585 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPE-KEREKKLTDGGLDISGLMN---IKLVHREGNAVIRRHLESL 717 (744)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~-~er~~~l~~~g~~~~~L~n---~~V~~i~GD~td~~~L~e~ 717 (744)
.++++|+|.|..+..++..|... .-.+|+|++..+. .+|.+.|++ .+.. ..+.. . +..+.+.+++
T Consensus 124 ~k~vlvlGaGGaarAi~~~l~~~--g~~~i~i~nRt~~~~~ka~~la~------~~~~~~~~~~~~-~-~~~~~~~l~~- 192 (288)
T PRK12749 124 GKTMVLLGAGGASTAIGAQGAIE--GLKEIKLFNRRDEFFDKALAFAQ------RVNENTDCVVTV-T-DLADQQAFAE- 192 (288)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC--CCCEEEEEeCCccHHHHHHHHHH------HhhhccCceEEE-e-chhhhhhhhh-
Confidence 46899999999999988888653 2358999998643 468888876 2211 11111 1 1111122333
Q ss_pred CCCCcceEEEec
Q 004585 718 PLETFDSMSHWK 729 (744)
Q Consensus 718 ~I~~~DavIilT 729 (744)
.+.++|.+|-.|
T Consensus 193 ~~~~aDivINaT 204 (288)
T PRK12749 193 ALASADILTNGT 204 (288)
T ss_pred hcccCCEEEECC
Confidence 367899888877
No 467
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=63.68 E-value=25 Score=35.99 Aligned_cols=76 Identities=16% Similarity=0.164 Sum_probs=49.9
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChH-HHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhcc----
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKE-EMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e-~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA---- 456 (744)
..++|.|.+. .|..++++|.+.+ ..|+++++++. .....+++ .+.++.++.+|.++++.++++
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G------~~vi~~~r~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAG------ADIVGAGRSEPSETQQQVEA-----LGRRFLSLTADLSDIEAIKALVDSA 74 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC------CEEEEEcCchHHHHHHHHHh-----cCCceEEEECCCCCHHHHHHHHHHH
Confidence 4688889754 6999999998754 56777777542 22222221 133578889999999887642
Q ss_pred --CcccccEEEEecC
Q 004585 457 --SVSKARAIIVLAS 469 (744)
Q Consensus 457 --gI~~A~aVIiltd 469 (744)
.....|.+|-.+.
T Consensus 75 ~~~~~~~d~li~~ag 89 (248)
T TIGR01832 75 VEEFGHIDILVNNAG 89 (248)
T ss_pred HHHcCCCCEEEECCC
Confidence 1235677776664
No 468
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=63.65 E-value=25 Score=36.84 Aligned_cols=89 Identities=11% Similarity=-0.105 Sum_probs=51.8
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCC-CEEEEEccCCchH----HHHHh--hcCCCC---------cCCCCCceEEEEE
Q 004585 642 PEKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEKE----REKKL--TDGGLD---------ISGLMNIKLVHRE 705 (744)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~~~~g-s~v~IIe~~p~~e----r~~~l--~~~g~~---------~~~L~n~~V~~i~ 705 (744)
..+|+|+|.|.+|..+++.|... | .++++++.+.-++ |.-.. .+.|-. ..--+++.|..+.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~---GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~ 87 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARS---GVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE 87 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc---CCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee
Confidence 45899999999999999999763 4 3899998652111 11100 011100 0012466776566
Q ss_pred cCcCCHhhHhcCCCCCcceEEEecCchhh
Q 004585 706 GNAVIRRHLESLPLETFDSMSHWKTRLCI 734 (744)
Q Consensus 706 GD~td~~~L~e~~I~~~DavIilTde~ni 734 (744)
...+. +.+.+.--.++|.||...|....
T Consensus 88 ~~i~~-~~~~~l~~~~~D~VvdaiD~~~~ 115 (231)
T cd00755 88 EFLTP-DNSEDLLGGDPDFVVDAIDSIRA 115 (231)
T ss_pred eecCH-hHHHHHhcCCCCEEEEcCCCHHH
Confidence 55442 23333323469999888876543
No 469
>PRK08177 short chain dehydrogenase; Provisional
Probab=63.62 E-value=20 Score=36.41 Aligned_cols=74 Identities=19% Similarity=0.054 Sum_probs=49.0
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCc---
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI--- 458 (744)
.+++|.|... .|..++++|...+ ..|++++++++..+.+ .+. .++.+..+|.++++.++++--
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G------~~V~~~~r~~~~~~~~-~~~------~~~~~~~~D~~d~~~~~~~~~~~~ 68 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERG------WQVTATVRGPQQDTAL-QAL------PGVHIEKLDMNDPASLDQLLQRLQ 68 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCC------CEEEEEeCCCcchHHH-Hhc------cccceEEcCCCCHHHHHHHHHHhh
Confidence 4688998655 6889999998643 5788888877655443 211 246677888888877655321
Q ss_pred -ccccEEEEecC
Q 004585 459 -SKARAIIVLAS 469 (744)
Q Consensus 459 -~~A~aVIiltd 469 (744)
.+.|.+|..+.
T Consensus 69 ~~~id~vi~~ag 80 (225)
T PRK08177 69 GQRFDLLFVNAG 80 (225)
T ss_pred cCCCCEEEEcCc
Confidence 24677776653
No 470
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=63.48 E-value=33 Score=36.11 Aligned_cols=77 Identities=16% Similarity=0.139 Sum_probs=51.4
Q ss_pred CceEEEEccc---chHHHHHHHHHhhcCCCCEEEEEccCC-chHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhc-
Q 004585 642 PEKILFCGWR---RDIDDMIMVLEAFLAPGSELWMLNEVP-EKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES- 716 (744)
Q Consensus 642 ~~rILI~Gwg---~~g~~l~~~L~~~~~~gs~v~IIe~~p-~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e- 716 (744)
.+.++|.|++ .+|..+++.|.+ .|..|.+..... .++..+.+.+ .+... ..+..|.+|++.+++
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~---~G~~vil~~r~~~~~~~~~~~~~------~~~~~--~~~~~Dl~~~~~v~~~ 74 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHR---EGAELAFTYQNDKLKGRVEEFAA------QLGSD--IVLPCDVAEDASIDAM 74 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHH---CCCEEEEEecchhHHHHHHHHHh------ccCCc--eEeecCCCCHHHHHHH
Confidence 3689999986 599999999976 488888876431 1233444443 22232 357899999988764
Q ss_pred -----CCCCCcceEEEec
Q 004585 717 -----LPLETFDSMSHWK 729 (744)
Q Consensus 717 -----~~I~~~DavIilT 729 (744)
+..+..|.+|.-+
T Consensus 75 ~~~~~~~~g~iD~linnA 92 (262)
T PRK07984 75 FAELGKVWPKFDGFVHSI 92 (262)
T ss_pred HHHHHhhcCCCCEEEECC
Confidence 2345678877555
No 471
>PRK07677 short chain dehydrogenase; Provisional
Probab=63.45 E-value=17 Score=37.48 Aligned_cols=78 Identities=6% Similarity=0.086 Sum_probs=50.7
Q ss_pred ceEEEEccc-chHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC----
Q 004585 643 EKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (744)
Q Consensus 643 ~rILI~Gwg-~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~---- 717 (744)
++++|.|++ .+|..+++.|.+ .|..|.+++..+ ++.+.+.+. + ... ...+..+.+|.+|++.+++.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~---~G~~Vi~~~r~~--~~~~~~~~~-~--~~~-~~~~~~~~~D~~~~~~~~~~~~~~ 72 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAE---EGANVVITGRTK--EKLEEAKLE-I--EQF-PGQVLTVQMDVRNPEDVQKMVEQI 72 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHH-H--Hhc-CCcEEEEEecCCCHHHHHHHHHHH
Confidence 578999985 589999999976 488998887643 333333220 0 001 12355689999999877652
Q ss_pred --CCCCcceEEEec
Q 004585 718 --PLETFDSMSHWK 729 (744)
Q Consensus 718 --~I~~~DavIilT 729 (744)
.....|.+|-.+
T Consensus 73 ~~~~~~id~lI~~a 86 (252)
T PRK07677 73 DEKFGRIDALINNA 86 (252)
T ss_pred HHHhCCccEEEECC
Confidence 124568888655
No 472
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=63.44 E-value=17 Score=41.47 Aligned_cols=73 Identities=14% Similarity=0.117 Sum_probs=50.2
Q ss_pred cCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCCh-HHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccCccc
Q 004585 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (744)
Q Consensus 382 k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~-e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (744)
..+++|+|.|..|..+++.|...+ ..|+++|.+. +.+++..+++ ...++.++.++..+. ....
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G------~~V~~~d~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~------~~~~ 68 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLG------AKVILTDEKEEDQLKEALEEL----GELGIELVLGEYPEE------FLEG 68 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC------CEEEEEeCCchHHHHHHHHHH----HhcCCEEEeCCcchh------Hhhc
Confidence 458999999999999999998754 6888998874 3343333222 123466778887762 2356
Q ss_pred ccEEEEecCC
Q 004585 461 ARAIIVLASD 470 (744)
Q Consensus 461 A~aVIiltdd 470 (744)
+|.||..+..
T Consensus 69 ~d~vv~~~g~ 78 (450)
T PRK14106 69 VDLVVVSPGV 78 (450)
T ss_pred CCEEEECCCC
Confidence 8888887753
No 473
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=63.42 E-value=29 Score=37.82 Aligned_cols=40 Identities=23% Similarity=0.150 Sum_probs=33.0
Q ss_pred eEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHH
Q 004585 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIA 429 (744)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~ 429 (744)
+|.|+|.|..|..++..|...+ +.|.+++++++.++.+.+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g------~~V~l~~r~~~~~~~i~~ 41 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKK------ISVNLWGRNHTTFESINT 41 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCC------CeEEEEecCHHHHHHHHH
Confidence 6899999999999999998653 678899998877766543
No 474
>PRK07069 short chain dehydrogenase; Validated
Probab=63.30 E-value=26 Score=35.84 Aligned_cols=79 Identities=10% Similarity=0.055 Sum_probs=47.6
Q ss_pred EEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCC-hHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC-----
Q 004585 385 ILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERD-KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS----- 457 (744)
Q Consensus 385 III~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d-~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg----- 457 (744)
++|.|.+. .|..+++.|...+ ..|++++++ ++..+...+++........+.++.+|.++++.++++=
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQG------AKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAAD 75 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCC------CEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHH
Confidence 68888655 6899999998643 567777776 5444444332211001123456778888888876531
Q ss_pred -cccccEEEEecC
Q 004585 458 -VSKARAIIVLAS 469 (744)
Q Consensus 458 -I~~A~aVIiltd 469 (744)
....|.+|-.+.
T Consensus 76 ~~~~id~vi~~ag 88 (251)
T PRK07069 76 AMGGLSVLVNNAG 88 (251)
T ss_pred HcCCccEEEECCC
Confidence 224577776664
No 475
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=63.30 E-value=11 Score=47.67 Aligned_cols=35 Identities=11% Similarity=0.004 Sum_probs=30.8
Q ss_pred CCCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccC
Q 004585 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (744)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~ 677 (744)
...++|+|+|+|..|...|..|.+. |.+|+|+|..
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~---G~~VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARA---GHPVTVFERE 571 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHc---CCeEEEEecc
Confidence 3467999999999999999999874 8999999964
No 476
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=63.25 E-value=23 Score=36.24 Aligned_cols=79 Identities=14% Similarity=0.032 Sum_probs=50.2
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC----
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~---- 717 (744)
+.++|.|+ |.+|..+++.|.+. |..+.++.......+.+.+.+. .-.+..+..+.+|.+|.+.+++.
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~---G~~vv~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~~~ 75 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKD---GFKVVAGCGPNSPRRVKWLEDQ-----KALGFDFIASEGNVGDWDSTKAAFDKV 75 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHc---CCEEEEEcCCChHHHHHHHHHH-----HhcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 56899998 78899999999764 8888775432122222222220 00133455678999999887653
Q ss_pred --CCCCcceEEEec
Q 004585 718 --PLETFDSMSHWK 729 (744)
Q Consensus 718 --~I~~~DavIilT 729 (744)
.....|.+|-.+
T Consensus 76 ~~~~~~id~li~~a 89 (246)
T PRK12938 76 KAEVGEIDVLVNNA 89 (246)
T ss_pred HHHhCCCCEEEECC
Confidence 124578888766
No 477
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=63.13 E-value=13 Score=44.81 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=30.8
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 678 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p 678 (744)
..++|+|+|+|..|...+..|.+. |.+|+|++..+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~---G~~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA---GVQVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc---CCcEEEEeCCC
Confidence 468999999999999999999864 88999999764
No 478
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=62.98 E-value=18 Score=39.65 Aligned_cols=42 Identities=17% Similarity=0.090 Sum_probs=32.4
Q ss_pred ceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCC
Q 004585 643 EKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGG 690 (744)
Q Consensus 643 ~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g 690 (744)
.+|.|+|.|.+|..++..|.+. |.+|++++.. ++.+.+.+.|
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~---G~~V~~~~r~---~~~~~~~~~g 44 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA---GADVTLIGRA---RIGDELRAHG 44 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc---CCcEEEEecH---HHHHHHHhcC
Confidence 3799999999999999999764 8899999853 2334455444
No 479
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=62.93 E-value=9.6 Score=40.83 Aligned_cols=32 Identities=13% Similarity=0.168 Sum_probs=27.4
Q ss_pred eEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCC
Q 004585 644 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 678 (744)
Q Consensus 644 rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p 678 (744)
+|+|+|+|..|..+|..|.+. |.+|+|+|..+
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~---G~~v~i~E~~~ 34 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARA---GIDVTIIERRP 34 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHT---TCEEEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhc---ccccccchhcc
Confidence 699999999999999999985 99999999865
No 480
>PRK06179 short chain dehydrogenase; Provisional
Probab=62.92 E-value=14 Score=38.52 Aligned_cols=70 Identities=11% Similarity=0.032 Sum_probs=49.4
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC----
Q 004585 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (744)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~---- 717 (744)
++++|.|+ |.+|..++++|.+ .|.+|.++..++ +..+ ...+ +.++.+|.+|++.++++
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~---~g~~V~~~~r~~--~~~~----------~~~~--~~~~~~D~~d~~~~~~~~~~~ 67 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLAR---AGYRVFGTSRNP--ARAA----------PIPG--VELLELDVTDDASVQAAVDEV 67 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHH---CCCEEEEEeCCh--hhcc----------ccCC--CeeEEeecCCHHHHHHHHHHH
Confidence 57999997 6789999999976 489999988643 2211 1223 33588999999887653
Q ss_pred --CCCCcceEEEec
Q 004585 718 --PLETFDSMSHWK 729 (744)
Q Consensus 718 --~I~~~DavIilT 729 (744)
..+..|.+|..+
T Consensus 68 ~~~~g~~d~li~~a 81 (270)
T PRK06179 68 IARAGRIDVLVNNA 81 (270)
T ss_pred HHhCCCCCEEEECC
Confidence 124568888766
No 481
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=62.87 E-value=25 Score=36.57 Aligned_cols=76 Identities=14% Similarity=0.104 Sum_probs=51.8
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--- 717 (744)
.++++|.|+ |.+|..+++.|.+ .|.+|.+++.. .++.+.+.+ .. ...+..+.+|.+|.+.++++
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~---~G~~V~~~~r~--~~~~~~l~~------~~-~~~~~~~~~D~~~~~~~~~~~~~ 72 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVA---EGARVAVLDKS--AAGLQELEA------AH-GDAVVGVEGDVRSLDDHKEAVAR 72 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHh------hc-CCceEEEEeccCCHHHHHHHHHH
Confidence 468999998 4689999999976 49999998763 455555543 11 12345688999997655431
Q ss_pred ---CCCCcceEEEec
Q 004585 718 ---PLETFDSMSHWK 729 (744)
Q Consensus 718 ---~I~~~DavIilT 729 (744)
.....|.+|-.+
T Consensus 73 ~~~~~g~id~li~~A 87 (262)
T TIGR03325 73 CVAAFGKIDCLIPNA 87 (262)
T ss_pred HHHHhCCCCEEEECC
Confidence 124567777664
No 482
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=62.84 E-value=17 Score=46.04 Aligned_cols=34 Identities=12% Similarity=-0.000 Sum_probs=29.9
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccC
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~ 677 (744)
..++|+|+|+|.-|...|..|.+. |.+|+|+|..
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~---G~~VTV~Ek~ 569 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARA---GHPVTVFEKK 569 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC---CCeEEEEecc
Confidence 357999999999999999999864 8999999964
No 483
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=62.82 E-value=21 Score=37.99 Aligned_cols=43 Identities=12% Similarity=0.192 Sum_probs=34.6
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhc
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTD 688 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~ 688 (744)
..++++|+|.|..|..++..|.+. |.+|++++.. .++.+.+++
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~---g~~v~v~~R~--~~~~~~la~ 158 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKA---DCNVIIANRT--VSKAEELAE 158 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHC---CCEEEEEeCC--HHHHHHHHH
Confidence 356899999999999999999763 7899999864 467666664
No 484
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=62.76 E-value=18 Score=39.25 Aligned_cols=81 Identities=14% Similarity=0.124 Sum_probs=49.4
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCC-CEEEEEccCCch-----------------HHHHHhhcCCCCcCCC-CCceE
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEK-----------------EREKKLTDGGLDISGL-MNIKL 701 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g-s~v~IIe~~p~~-----------------er~~~l~~~g~~~~~L-~n~~V 701 (744)
...+|+|+|.|-.|..+++-|... | -+++|++.+.-+ .|.+...+ . ..+| +++.|
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLala---GVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~-~--L~eLNp~V~V 91 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLILA---GVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQA-R--LAELNPYVPV 91 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHHc---CCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHH-H--HHHHCCCCEE
Confidence 346899999999999999999753 4 368898865321 12221111 0 0011 46677
Q ss_pred EEEEcCcCCHhhHhcCCCCCcceEEEecCchh
Q 004585 702 VHREGNAVIRRHLESLPLETFDSMSHWKTRLC 733 (744)
Q Consensus 702 ~~i~GD~td~~~L~e~~I~~~DavIilTde~n 733 (744)
...+++ .+++. +.++|.||...|...
T Consensus 92 ~~~~~~-~~~~~-----l~~fdvVV~~~~~~~ 117 (286)
T cd01491 92 TVSTGP-LTTDE-----LLKFQVVVLTDASLE 117 (286)
T ss_pred EEEecc-CCHHH-----HhcCCEEEEecCCHH
Confidence 666665 34444 457897777666443
No 485
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=62.71 E-value=11 Score=40.87 Aligned_cols=80 Identities=18% Similarity=0.181 Sum_probs=48.4
Q ss_pred EEEEccc-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCc----EEEEEeCCCCHHHHhcc-Cc
Q 004585 385 ILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTS----VICRSGSPLILADLKKV-SV 458 (744)
Q Consensus 385 III~G~g-~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~----V~~i~Gd~t~~e~L~rA-gI 458 (744)
|+|.|++ ..|..++++|...+. ..+++.|+|+..+-.+..++...+.+.+ +.++.||..|.+.|.++ .-
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p-----~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~ 75 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP-----KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEE 75 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB------SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT-
T ss_pred CEEEccccHHHHHHHHHHHhcCC-----CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhh
Confidence 5777754 569999999997642 5789999998877666554421112222 34568999999998887 22
Q ss_pred ccccEEEEecC
Q 004585 459 SKARAIIVLAS 469 (744)
Q Consensus 459 ~~A~aVIiltd 469 (744)
.+.|.|+=.+-
T Consensus 76 ~~pdiVfHaAA 86 (293)
T PF02719_consen 76 YKPDIVFHAAA 86 (293)
T ss_dssp -T-SEEEE---
T ss_pred cCCCEEEEChh
Confidence 36677776553
No 486
>PRK06223 malate dehydrogenase; Reviewed
Probab=62.69 E-value=63 Score=34.89 Aligned_cols=76 Identities=17% Similarity=0.138 Sum_probs=44.7
Q ss_pred CeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhc--ccCCCcEEEEEeCCCCHHHHhccCccc
Q 004585 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF--DFMGTSVICRSGSPLILADLKKVSVSK 460 (744)
Q Consensus 383 ~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~--~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (744)
.+|.|+|.|..|..++..+...+ .. .|+|+|.+++..+....++.. ....... -+.+. ++.+ .+.+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~----~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~-~i~~~-~d~~-----~~~~ 70 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKE----LG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDT-KITGT-NDYE-----DIAG 70 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC----Ce-EEEEEECCCchhHHHHHHHHhhhhhcCCCc-EEEeC-CCHH-----HHCC
Confidence 48999999999999998887542 12 799999887654432221110 0111111 12221 2222 2568
Q ss_pred ccEEEEecCC
Q 004585 461 ARAIIVLASD 470 (744)
Q Consensus 461 A~aVIiltdd 470 (744)
||.||+....
T Consensus 71 aDiVii~~~~ 80 (307)
T PRK06223 71 SDVVVITAGV 80 (307)
T ss_pred CCEEEECCCC
Confidence 8999987654
No 487
>PRK12744 short chain dehydrogenase; Provisional
Probab=62.69 E-value=23 Score=36.71 Aligned_cols=79 Identities=14% Similarity=0.076 Sum_probs=50.3
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCC--chHHHHHhhcCCCCcCCC--CCceEEEEEcCcCCHhhHhc
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVP--EKEREKKLTDGGLDISGL--MNIKLVHREGNAVIRRHLES 716 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p--~~er~~~l~~~g~~~~~L--~n~~V~~i~GD~td~~~L~e 716 (744)
.++++|.|+ |.+|..+++.|.+ .|.++.++...+ +.+..+.+.+ .+ .+..+..+.+|.+|++.+++
T Consensus 8 ~k~vlItGa~~gIG~~~a~~l~~---~G~~vv~i~~~~~~~~~~~~~~~~------~l~~~~~~~~~~~~D~~~~~~~~~ 78 (257)
T PRK12744 8 GKVVLIAGGAKNLGGLIARDLAA---QGAKAVAIHYNSAASKADAEETVA------AVKAAGAKAVAFQADLTTAAAVEK 78 (257)
T ss_pred CcEEEEECCCchHHHHHHHHHHH---CCCcEEEEecCCccchHHHHHHHH------HHHHhCCcEEEEecCcCCHHHHHH
Confidence 368999997 5789999999976 488866665321 2222222221 11 12345568999999988864
Q ss_pred C------CCCCcceEEEec
Q 004585 717 L------PLETFDSMSHWK 729 (744)
Q Consensus 717 ~------~I~~~DavIilT 729 (744)
. .....|.+|...
T Consensus 79 ~~~~~~~~~~~id~li~~a 97 (257)
T PRK12744 79 LFDDAKAAFGRPDIAINTV 97 (257)
T ss_pred HHHHHHHhhCCCCEEEECC
Confidence 2 234678887665
No 488
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=62.65 E-value=29 Score=37.63 Aligned_cols=81 Identities=21% Similarity=0.079 Sum_probs=53.9
Q ss_pred cCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC---
Q 004585 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (744)
Q Consensus 382 k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (744)
+.+++|.|.+. .|..++++|...+ ...|+++.++.+..++..+++. ..+..+.++..|.++.+.++++-
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G-----~~~V~l~~r~~~~~~~~~~~l~--~~~~~~~~~~~Dl~~~~~v~~~~~~~ 75 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATG-----EWHVIMACRDFLKAEQAAKSLG--MPKDSYTIMHLDLGSLDSVRQFVQQF 75 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcC-----CCEEEEEeCCHHHHHHHHHHhc--CCCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 45889999876 6889999998642 0467777887776665544331 12345778889999998876542
Q ss_pred ---cccccEEEEecC
Q 004585 458 ---VSKARAIIVLAS 469 (744)
Q Consensus 458 ---I~~A~aVIiltd 469 (744)
..+-|.+|..+.
T Consensus 76 ~~~~~~iD~lI~nAG 90 (314)
T TIGR01289 76 RESGRPLDALVCNAA 90 (314)
T ss_pred HHhCCCCCEEEECCC
Confidence 124566776554
No 489
>PRK07814 short chain dehydrogenase; Provisional
Probab=62.60 E-value=21 Score=37.20 Aligned_cols=79 Identities=5% Similarity=0.068 Sum_probs=52.3
Q ss_pred CceEEEEccc-chHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004585 642 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (744)
Q Consensus 642 ~~rILI~Gwg-~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--- 717 (744)
.+.++|.|++ .+|..+++.|.+ .|.+|.++...+ +..+.+.+. +. . .+..+.++.+|.++++.+++.
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~---~G~~Vi~~~r~~--~~~~~~~~~-l~--~-~~~~~~~~~~D~~~~~~~~~~~~~ 80 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAE---AGADVLIAARTE--SQLDEVAEQ-IR--A-AGRRAHVVAADLAHPEATAGLAGQ 80 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHH-HH--h-cCCcEEEEEccCCCHHHHHHHHHH
Confidence 4679999985 589999999976 488999888643 333333220 00 0 122355688999999988642
Q ss_pred ---CCCCcceEEEec
Q 004585 718 ---PLETFDSMSHWK 729 (744)
Q Consensus 718 ---~I~~~DavIilT 729 (744)
.....|.+|-.+
T Consensus 81 ~~~~~~~id~vi~~A 95 (263)
T PRK07814 81 AVEAFGRLDIVVNNV 95 (263)
T ss_pred HHHHcCCCCEEEECC
Confidence 234678888654
No 490
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=62.60 E-value=23 Score=36.88 Aligned_cols=79 Identities=9% Similarity=-0.019 Sum_probs=52.1
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--- 717 (744)
.++++|.|+ +.+|..++++|.+ .|.+|.+++..+ ++.+.+.+. + .+ .+..+..+.+|.+|++.+++.
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~---~G~~vv~~~~~~--~~~~~~~~~-~--~~-~~~~~~~~~~Dl~~~~~~~~~~~~ 80 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAK---AGATIVFNDINQ--ELVDKGLAA-Y--RE-LGIEAHGYVCDVTDEDGVQAMVSQ 80 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCeEEEEeCCH--HHHHHHHHH-H--Hh-cCCceEEEEcCCCCHHHHHHHHHH
Confidence 468999998 4689999999976 488998887643 333332220 0 00 122455689999999887652
Q ss_pred ---CCCCcceEEEec
Q 004585 718 ---PLETFDSMSHWK 729 (744)
Q Consensus 718 ---~I~~~DavIilT 729 (744)
.....|.+|..+
T Consensus 81 ~~~~~~~id~li~~a 95 (265)
T PRK07097 81 IEKEVGVIDILVNNA 95 (265)
T ss_pred HHHhCCCCCEEEECC
Confidence 235678888766
No 491
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.59 E-value=29 Score=35.25 Aligned_cols=78 Identities=12% Similarity=0.096 Sum_probs=52.2
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC----
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (744)
.+++|.|.+. .|..++++|.+.+ ..|++..++++..+.+..+... ..++.++.+|.++++.++++-
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G------~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~ 76 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEG------AQVCINSRNENKLKRMKKTLSK---YGNIHYVVGDVSSTESARNVIEKAA 76 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh---cCCeEEEECCCCCHHHHHHHHHHHH
Confidence 5889999865 6889999998653 5788888887766554332210 124778899999988876531
Q ss_pred --cccccEEEEecC
Q 004585 458 --VSKARAIIVLAS 469 (744)
Q Consensus 458 --I~~A~aVIiltd 469 (744)
....+.+|....
T Consensus 77 ~~~~~id~ii~~ag 90 (238)
T PRK05786 77 KVLNAIDGLVVTVG 90 (238)
T ss_pred HHhCCCCEEEEcCC
Confidence 123466666654
No 492
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=62.54 E-value=45 Score=36.55 Aligned_cols=76 Identities=18% Similarity=0.167 Sum_probs=48.4
Q ss_pred cCeEEEEcccccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhc--ccCCCcEEEEEeCCCCHHHHhccCcc
Q 004585 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF--DFMGTSVICRSGSPLILADLKKVSVS 459 (744)
Q Consensus 382 k~HIII~G~g~~g~~Ll~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~--~~~~~~V~~i~Gd~t~~e~L~rAgI~ 459 (744)
..+|.|+|.|.+|..++-.|...+ -...++|+|.+++.++....++.. .+. .++. +.+ .+.++ .+
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~----~~~el~L~D~~~~~~~g~~~Dl~~~~~~~-~~~~-i~~--~~~~~-----~~ 72 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQG----IADELVIIDINKEKAEGDAMDLSHAVPFT-SPTK-IYA--GDYSD-----CK 72 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC----CCCEEEEEeCCCchhHHHHHHHHhhcccc-CCeE-EEe--CCHHH-----hC
Confidence 459999999999999998887543 224789999877655443333311 111 1232 222 23344 45
Q ss_pred cccEEEEecCC
Q 004585 460 KARAIIVLASD 470 (744)
Q Consensus 460 ~A~aVIiltdd 470 (744)
+||.||+++..
T Consensus 73 ~adivIitag~ 83 (315)
T PRK00066 73 DADLVVITAGA 83 (315)
T ss_pred CCCEEEEecCC
Confidence 89999998876
No 493
>PRK07985 oxidoreductase; Provisional
Probab=62.46 E-value=19 Score=38.55 Aligned_cols=81 Identities=17% Similarity=0.111 Sum_probs=51.2
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L~n~~V~~i~GD~td~~~L~e~--- 717 (744)
.++++|.|+ |.+|..+++.|.+ .|.+|.+.....+.+..+.+.+. + .. .+..+.++.+|.+|++.+++.
T Consensus 49 ~k~vlITGas~gIG~aia~~L~~---~G~~Vi~~~~~~~~~~~~~~~~~-~--~~-~~~~~~~~~~Dl~~~~~~~~~~~~ 121 (294)
T PRK07985 49 DRKALVTGGDSGIGRAAAIAYAR---EGADVAISYLPVEEEDAQDVKKI-I--EE-CGRKAVLLPGDLSDEKFARSLVHE 121 (294)
T ss_pred CCEEEEECCCCcHHHHHHHHHHH---CCCEEEEecCCcchhhHHHHHHH-H--HH-cCCeEEEEEccCCCHHHHHHHHHH
Confidence 368999998 6789999999986 48999887543223333333220 0 00 122355688999998866532
Q ss_pred ---CCCCcceEEEec
Q 004585 718 ---PLETFDSMSHWK 729 (744)
Q Consensus 718 ---~I~~~DavIilT 729 (744)
..+..|.+|...
T Consensus 122 ~~~~~g~id~lv~~A 136 (294)
T PRK07985 122 AHKALGGLDIMALVA 136 (294)
T ss_pred HHHHhCCCCEEEECC
Confidence 245668877654
No 494
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=62.46 E-value=12 Score=45.87 Aligned_cols=35 Identities=14% Similarity=0.054 Sum_probs=30.5
Q ss_pred CCCceEEEEcccchHHHHHHHHHhhcCCCCEEEEEccC
Q 004585 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (744)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~~~~gs~v~IIe~~ 677 (744)
...++|+|+|+|.-|...|..|.+. |.+|+|+|..
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~---G~~V~v~e~~ 463 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKR---GYDVTVFEAL 463 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC---CCeEEEEecC
Confidence 4567999999999999999999864 8999999963
No 495
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=62.42 E-value=21 Score=35.63 Aligned_cols=44 Identities=9% Similarity=0.052 Sum_probs=32.9
Q ss_pred CCCceEEEEcccch-HHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhh
Q 004585 640 KYPEKILFCGWRRD-IDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLT 687 (744)
Q Consensus 640 ~~~~rILI~Gwg~~-g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~ 687 (744)
-..++|+|+|.|+. |..+++.|.+ .|..|++++... +++.+.+.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~---~g~~V~v~~r~~-~~l~~~l~ 86 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLN---RNATVTVCHSKT-KNLKEHTK 86 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhh---CCCEEEEEECCc-hhHHHHHh
Confidence 35679999999995 8889999976 377899999752 34444443
No 496
>PRK12827 short chain dehydrogenase; Provisional
Probab=62.39 E-value=28 Score=35.43 Aligned_cols=81 Identities=16% Similarity=0.110 Sum_probs=52.0
Q ss_pred cCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEEcC----ChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhcc
Q 004585 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAER----DKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (744)
Q Consensus 382 k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLid~----d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA 456 (744)
.+.++|.|.+. .|..++++|...+ +.|++++. +++..+...++.. ..+.++.++.+|..+.+.++++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g------~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~ 77 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADG------ADVIVLDIHPMRGRAEADAVAAGIE--AAGGKALGLAFDVRDFAATRAA 77 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC------CeEEEEcCcccccHHHHHHHHHHHH--hcCCcEEEEEccCCCHHHHHHH
Confidence 35789999755 5889999998653 56666543 3344443332221 1234678899999999988765
Q ss_pred C------cccccEEEEecCC
Q 004585 457 S------VSKARAIIVLASD 470 (744)
Q Consensus 457 g------I~~A~aVIiltdd 470 (744)
- ....+.+|-.+..
T Consensus 78 ~~~~~~~~~~~d~vi~~ag~ 97 (249)
T PRK12827 78 LDAGVEEFGRLDILVNNAGI 97 (249)
T ss_pred HHHHHHHhCCCCEEEECCCC
Confidence 2 1356788877643
No 497
>PRK05867 short chain dehydrogenase; Provisional
Probab=62.37 E-value=19 Score=37.27 Aligned_cols=77 Identities=14% Similarity=0.108 Sum_probs=52.7
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCEEEEEccCCchHHHHHhhcCCCCcCCC--CCceEEEEEcCcCCHhhHhcC-
Q 004585 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGL--MNIKLVHREGNAVIRRHLESL- 717 (744)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~~~~gs~v~IIe~~p~~er~~~l~~~g~~~~~L--~n~~V~~i~GD~td~~~L~e~- 717 (744)
.+.++|.|+ +.+|..+++.|.+ .|.+|.++... .++.+.+.+ .+ .+..+..+.+|.+|++.+++.
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~---~G~~V~~~~r~--~~~~~~~~~------~l~~~~~~~~~~~~D~~~~~~~~~~~ 77 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVE---AGAQVAIAARH--LDALEKLAD------EIGTSGGKVVPVCCDVSQHQQVTSML 77 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEcCC--HHHHHHHHH------HHHhcCCeEEEEEccCCCHHHHHHHH
Confidence 468999998 6789999999976 48899888764 344444432 11 112355688999999877552
Q ss_pred -----CCCCcceEEEec
Q 004585 718 -----PLETFDSMSHWK 729 (744)
Q Consensus 718 -----~I~~~DavIilT 729 (744)
..+..|.+|...
T Consensus 78 ~~~~~~~g~id~lv~~a 94 (253)
T PRK05867 78 DQVTAELGGIDIAVCNA 94 (253)
T ss_pred HHHHHHhCCCCEEEECC
Confidence 124678887654
No 498
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=62.36 E-value=16 Score=39.25 Aligned_cols=43 Identities=16% Similarity=0.270 Sum_probs=35.8
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCC-CEEEEEccCCchHHHHHhhc
Q 004585 641 YPEKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEKEREKKLTD 688 (744)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g-s~v~IIe~~p~~er~~~l~~ 688 (744)
..++++|+|.|..+..++..|.+. | .+|+|++. +.+|.+.|++
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~---G~~~i~I~nR--t~~ka~~La~ 167 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASL---GVTDITVINR--NPDKLSRLVD 167 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHc---CCCeEEEEeC--CHHHHHHHHH
Confidence 346899999999999999999764 5 47999986 4688888886
No 499
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=62.31 E-value=32 Score=35.24 Aligned_cols=80 Identities=19% Similarity=0.109 Sum_probs=50.5
Q ss_pred cCeEEEEcccc-cHHHHHHHHHHhcccCCCCeEEEEE-cCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC--
Q 004585 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (744)
Q Consensus 382 k~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~iVVLi-d~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg-- 457 (744)
.+.++|.|.+. .|..+++.|.+.+ ..|+++ .++++..+....+... .+.++.++.+|.++.+.++++-
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g------~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARG------WSVGINYARDAAAAEETADAVRA--AGGRACVVAGDVANEADVIAMFDA 73 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCC------CEEEEEeCCCHHHHHHHHHHHHh--cCCcEEEEEeccCCHHHHHHHHHH
Confidence 35789999766 6889999998653 345444 4555544443332211 1346788999999988765531
Q ss_pred ----cccccEEEEecC
Q 004585 458 ----VSKARAIIVLAS 469 (744)
Q Consensus 458 ----I~~A~aVIiltd 469 (744)
....|.+|..+.
T Consensus 74 ~~~~~~~id~li~~ag 89 (248)
T PRK06947 74 VQSAFGRLDALVNNAG 89 (248)
T ss_pred HHHhcCCCCEEEECCc
Confidence 235677877664
No 500
>PRK06198 short chain dehydrogenase; Provisional
Probab=62.30 E-value=26 Score=36.12 Aligned_cols=79 Identities=19% Similarity=0.266 Sum_probs=52.1
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcccCCCCeE-EEEEcCChHHHHHHHHhhhcccCCCcEEEEEeCCCCHHHHhccC---
Q 004585 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVI-VVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (744)
Q Consensus 383 ~HIII~G~g~-~g~~Ll~eL~~~~~~~~~~~i-VVLid~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (744)
..++|.|.+. .|..++++|...+ .. |++++++++..+.....+. -.+.++.++.+|.++++.++++=
T Consensus 7 k~vlItGa~g~iG~~la~~l~~~G------~~~V~~~~r~~~~~~~~~~~l~--~~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (260)
T PRK06198 7 KVALVTGGTQGLGAAIARAFAERG------AAGLVICGRNAEKGEAQAAELE--ALGAKAVFVQADLSDVEDCRRVVAAA 78 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCC------CCeEEEEcCCHHHHHHHHHHHH--hcCCeEEEEEccCCCHHHHHHHHHHH
Confidence 4688998754 6889999998653 34 7888887765554333221 11345778889999988776641
Q ss_pred ---cccccEEEEecC
Q 004585 458 ---VSKARAIIVLAS 469 (744)
Q Consensus 458 ---I~~A~aVIiltd 469 (744)
....|.+|-++.
T Consensus 79 ~~~~g~id~li~~ag 93 (260)
T PRK06198 79 DEAFGRLDALVNAAG 93 (260)
T ss_pred HHHhCCCCEEEECCC
Confidence 124677777764
Done!