Query 004585
Match_columns 744
No_of_seqs 338 out of 2518
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 18:15:14 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004585.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1886-1890//hhsearch_pdb/004585hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gx0_A TRKA domain protein; me 1.0 1 1 434.1 27.8 398 283-740 15-429 (565)
2 4g65_A TRK system potassium up 1.0 1 1 351.5 19.5 304 382-740 3-321 (461)
3 1lnq_A MTHK channels, potassiu 1.0 1 1 333.7 13.3 298 293-620 25-329 (336)
4 3naf_A Calcium-activated potas 1.0 1 1 309.5 26.9 370 343-731 15-491 (798)
5 3mt5_A Potassium large conduct 1.0 1 1 269.5 24.6 333 381-730 2-466 (726)
6 4hpf_A Potassium channel subfa 1.0 1 1 258.3 20.4 332 381-729 2-473 (722)
7 4gx0_A TRKA domain protein; me 1.0 1 1 207.5 10.7 206 383-623 349-556 (565)
8 2aef_A Calcium-gated potassium 1.0 1 1 201.8 17.8 219 374-621 1-224 (234)
9 3l4b_C TRKA K+ channel protien 1.0 1 1 188.5 13.1 208 383-621 1-211 (218)
10 4g65_A TRK system potassium up 1.0 1 1 187.8 13.6 208 381-618 234-447 (461)
No 1
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=1.00 E-value=1 Score=434.13 Aligned_cols=398 Identities=15% Similarity=0.157 Sum_probs=318.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH----CCC--CCHHHHHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 60689999999999999997643131----037--9988999999876423788887-7895580115578887899999
Q 004585 283 YPYAKLLALLFATIFLIIFGGLALYA----VSD--SSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFA 355 (744)
Q Consensus 283 ~~~~~~l~Ll~~~l~lil~gtl~~~~----~E~--~s~~dAly~~~~titTvGygd~-~~t~~gRi~~v~lil~Gi~ifa 355 (744)
..+..++.+++++++++++++++|++ +|+ ++|+|||||+++|+||+||||. |.+..+|+|+++++++|+++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~ 94 (565)
T 4gx0_A 15 QNLKVLLLYCAFLLVMLLAYASIFRYLMWHLEGRAYSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLD 94 (565)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 66999999999999999999999999997635888765523222346664106877677982189999999999999999
Q ss_pred HHHHH-HHHHHHHH-HHH----HCCCCCCEEECCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHH
Q ss_conf 99999-99999998-863----1048651000472999912652899999999821149998079999499378999998
Q 004585 356 MMLGL-VSDAISEK-VDS----LRKGKSEVIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIA 429 (744)
Q Consensus 356 ~lig~-i~~~i~~~-l~~----~r~Gr~~v~~k~HIIIiG~g~~g~~Li~~L~~~~~~~~~~~iVVLiD~d~e~le~~~~ 429 (744)
+.++. +++.+... +++ .+.++.....++|+||||||+.|..++++|...+ +.|+++|.|++.++.+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hviI~G~g~~g~~la~~L~~~~------~~vvvid~~~~~~~~~~~ 168 (565)
T 4gx0_A 95 IILPFGFVSMFLAPWIERRLRYHPTIELPDDTRGHILIFGIDPITRTLIRKLESRN------HLFVVVTDNYDQALHLEE 168 (565)
T ss_dssp THHHHHHHHHHHHHHHHHHTSCCCBCCCCTTCCSCEEEESCCHHHHHHHHHTTTTT------CCEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCC------CCEEEEECCHHHHHHHHH
T ss_conf 99889999999999999998750412354445872999888868999999999779------989999799999999998
Q ss_pred HHHCCCCCCCEEEEEECCCCHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHH
Q ss_conf 21002488727999957999888853685463289994489987710699999999985112899860899965999988
Q 004585 430 KLEFDFMGTSVICRSGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEP 509 (744)
Q Consensus 430 ~~~~~~~~~~V~~I~GD~~~~~~L~rAgi~~A~aVIilt~~~~~~~sD~~NI~i~Lsar~l~p~~~~~IIArv~d~e~~~ 509 (744)
+ .++.++.||++++++|++|++++|+++|+ +. +|+.|+.+|+.+|+++ + .++||+++++++.+
T Consensus 169 ~-------~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~-t~------~D~~n~~~~~~ar~~~-~--~~iiar~~~~~~~~ 231 (565)
T 4gx0_A 169 Q-------EGFKVVYGSPTDAHVLAGLRVAAARSIIA-NL------SDPDNANLCLTVRSLC-Q--TPIIAVVKEPVHGE 231 (565)
T ss_dssp S-------CSSEEEESCTTCHHHHHHTTGGGCSEEEE-CS------CHHHHHHHHHHHHTTC-C--CCEEEECSSGGGHH
T ss_pred H-------CCCEEEEECCCCHHHHHHCCCCCCCEEEE-EC------CCHHHHHHHHHHHHHC-C--CEEEEEECCHHHHH
T ss_conf 2-------39869996899989998569562799999-18------9677899999999866-9--64999978887899
Q ss_pred HHHHCCCCEEEEECCHHHHHHHHHHHHCCCCHH-HHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHH-CCCEEEEEEEEE
Q ss_conf 898749982668604899999999996088579-999998337886135314995578868767310-999399999982
Q 004585 510 LVKLVGGELIETVVAHDVIGRLMIQCALQPGLA-QIWEDILGFENAEFYIKRWPQLDDLRFEEVVIS-FPDAIPCGIKVA 587 (744)
Q Consensus 510 ~lk~~GaD~Ve~I~s~el~a~lLa~~~~~Pg~~-~Vl~~Ll~~~g~ei~i~~~s~l~Gktl~El~~~-~~~~ivIGI~r~ 587 (744)
.++.+|+|.| +++.+..++.+++.+..|+.. +++...-...-.|+.+. .+++.|++++|+..+ ..++.+++|+|
T Consensus 232 ~l~~~Gad~v--i~p~~~~~~~la~~~~~p~~~~~~~~~~~~~~l~e~~v~-~s~l~G~~l~el~~~~~~~~~vi~i~r- 307 (565)
T 4gx0_A 232 LLRLAGANQV--VPLTRILGRYLGIRATTCGALAHILDSFGNLQIAELPVH-GTPFAGKTIGESGIRQRTGLSIIGVWE- 307 (565)
T ss_dssp HHHHHTCSEE--ECHHHHHHHHHHHHHHC---------------------------------------------------
T ss_pred HHHHCCCCEE--ECHHHHHHHHHHHHHCCCCCCCCHHCCCCCCEEEEEEEC-CCCCCCCCHHHCCCCHHCCCEEEEEEE-
T ss_conf 9997699889--976999999999985166321101103678569999988-985589898994842105979999998-
Q ss_pred ECCCEEEECCCCCCEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 13990785899995242898999998289978999995211123456999999995199991541299999999863399
Q 004585 588 AEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAPGPLPEVCKRSFLKIPDPPKYPEKILFCGWRRDIDDMIMVLEAFLAP 667 (744)
Q Consensus 588 ~~~g~~~lnP~~dtvI~~GD~LiVIg~~~~i~~~~~~p~v~~~~~~~~~~~~~~~~rILIvG~g~~g~~l~~~L~~~~~~ 667 (744)
+|+.. +|.++++|++||.++++|+.+++.++.... +...+. ++++|||||+.|..+++.|.+.
T Consensus 308 --~g~~~-~p~~~~~l~~GD~L~v~g~~~~l~~~~~~~----------~~~~~~-~~viIiG~G~~G~~la~~L~~~--- 370 (565)
T 4gx0_A 308 --RGSLT-TPQRETVLTEQSLLVLAGTKSQLAALEYLI----------GEAPED-ELIFIIGHGRIGCAAAAFLDRK--- 370 (565)
T ss_dssp ----------------------------------------------------CC-CCEEEECCSHHHHHHHHHHHHT---
T ss_pred --CCEEE-CCCCCCEECCCCEEEEEECHHHHHHHHHHH----------CCCCCC-CCEEEECCCHHHHHHHHHHHHC---
T ss_conf --99884-799986867999999996899999999983----------578889-9889989887899999999987---
Q ss_pred CCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCEEEEEC--CCHHHHHHHCC
Q ss_conf 98799990698168889853288885788883498998574798567229999854699955--74004555148
Q 004585 668 GSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFDSMSHWK--TRLCILTHVLL 740 (744)
Q Consensus 668 g~~v~IIe~~p~~Er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~~aDaiIilt--d~~ni~t~~~~ 740 (744)
|.++++||.+| ++++. +. .+++||++|++.|+++++++||++|+++ |+.|++++++.
T Consensus 371 g~~v~vid~d~--~~~~~----------~~----~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d~~ni~~~~~a 429 (565)
T 4gx0_A 371 PVPFILIDRQE--SPVCN----------DH----VVVYGDATVGQTLRQAGIDRASGIIVTTNDDSTNIFLTLAC 429 (565)
T ss_dssp TCCEEEEESSC--CSSCC----------SS----CEEESCSSSSTHHHHHTTTSCSEEEECCSCHHHHHHHHHHH
T ss_pred CCCEEEEECCH--HHHHH----------CC----CEEEECCCCHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHH
T ss_conf 99789997886--89862----------68----78990789989998649241399999779826799999999
No 2
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=1.00 E-value=1 Score=351.46 Aligned_cols=304 Identities=14% Similarity=0.170 Sum_probs=257.9
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHCCCCCCC
Q ss_conf 47299991265289999999982114999807999949937899999821002488727999957999888853685463
Q 004585 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (744)
Q Consensus 382 k~HIIIiG~g~~g~~Li~~L~~~~~~~~~~~iVVLiD~d~e~le~~~~~~~~~~~~~~V~~I~GD~~~~~~L~rAgi~~A 461 (744)
.+||||||+|++|..++++|...+ +.|+++|.|++.++.+.++ .++.++.||+++++.|++||+++|
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~------~~v~vId~d~~~~~~~~~~-------~~~~~i~Gd~~~~~~L~~Agi~~a 69 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGEN------NDITIVDKDGDRLRELQDK-------YDLRVVNGHASHPDVLHEAGAQDA 69 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTT------EEEEEEESCHHHHHHHHHH-------SSCEEEESCTTCHHHHHHHTTTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC------CCEEEEECCHHHHHHHHHH-------CCCEEEEECCCCHHHHHHCCCCCC
T ss_conf 687999998899999999999789------9799998999999999973-------694799970799999985698749
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHH------HCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 289994489987710699999999985112899860899965999988898------74998266860489999999999
Q 004585 462 RAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVK------LVGGELIETVVAHDVIGRLMIQC 535 (744)
Q Consensus 462 ~aVIilt~~~~~~~sD~~NI~i~Lsar~l~p~~~~~IIArv~d~e~~~~lk------~~GaD~Ve~I~s~el~a~lLa~~ 535 (744)
+.+|++|+ +|+.|+.+|+.+|++++. .++|+|++++++....+ .+|+|.+ ++++..+++.+.+.
T Consensus 70 d~~ia~t~------~De~Nl~~~~~Ak~~~~~--~~~iar~~~~~~~~~~~~l~~~~~~giD~i--IsPe~~~a~~I~~~ 139 (461)
T 4g65_A 70 DMLVAVTN------TDETNMAACQVAFTLFNT--PNRIARIRSPQYLAQKEALFKSGAIPVDHL--IAPEELVTSYIERL 139 (461)
T ss_dssp SEEEECCS------CHHHHHHHHHHHHHHHCC--SSEEEECCCHHHHTTHHHHTTTSSSCCSEE--ECHHHHHHHHHHHH
T ss_pred CEEEEECC------CHHHHHHHHHHHHHHCCC--CCCEEEECCCHHHHHHHHHHHCCCCCCCEE--ECHHHHHHHHHHHH
T ss_conf 99999749------848999999999986687--642148526024455666543035785446--45899999999986
Q ss_pred HCCCCHHHHHHHHHCCCC-----CCEEECCCCCCCCCCHHHHHHHCC--CEEEEEEEEEECCCEEEECCCCCCEECCCCE
Q ss_conf 608857999999833788-----613531499557886876731099--9399999982139907858999952428989
Q 004585 536 ALQPGLAQIWEDILGFEN-----AEFYIKRWPQLDDLRFEEVVISFP--DAIPCGIKVAAEGGKIILNPDDNYVLKEGDE 608 (744)
Q Consensus 536 ~~~Pg~~~Vl~~Ll~~~g-----~ei~i~~~s~l~Gktl~El~~~~~--~~ivIGI~r~~~~g~~~lnP~~dtvI~~GD~ 608 (744)
+..|++.+++. +.+ .++.+.+.+++.|++++|+...++ ++.+++|+| +|+ .+.|.++++|++||.
T Consensus 140 i~~p~~~~~~~----f~~g~~~l~e~~v~~~s~l~g~~l~~l~~~~p~~~~~I~aI~R---~g~-~iiP~g~t~i~~gD~ 211 (461)
T 4g65_A 140 IQYPGALQVVS----FAEEKVSLVAVKAYYGGPLVGNALSALREHMPHIDTRVAAIFR---QGR-PIRPQGTTIIEADDE 211 (461)
T ss_dssp HTSTTCSEEEE----ETTTTEEEEEEECCTTSSSTTCBHHHHHHTSTTSCEEEEEEEE---TTE-EECCCTTCBCCTTCE
T ss_pred CCCCCEEEEEE----ECCCEEEEEEEEECCCCEECCCCHHHHHHHCCCCCEEEEEEEE---CCE-ECCCCCCCEECCCCE
T ss_conf 56887088888----2466489999996589736477289888547987549999997---884-506997725247989
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHC
Q ss_conf 99998289978999995211123456999999995199991541299999999863399987999906981688898532
Q 004585 609 VLVIAEDDDTYAPGPLPEVCKRSFLKIPDPPKYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTD 688 (744)
Q Consensus 609 LiVIg~~~~i~~~~~~p~v~~~~~~~~~~~~~~~~rILIvG~g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~Er~~~l~e 688 (744)
+|+++..+++.++... .+...+..++|+|+|+|++|..+++.|++ +.++++||.+ ++||+.+++
T Consensus 212 v~~i~~~~~i~~~~~~----------~g~~~~~~~~v~I~GgG~ig~~lA~~L~~----~~~v~iIE~d--~~r~~~la~ 275 (461)
T 4g65_A 212 VFFVAASNHIRSVMSE----------LQRLEKPYRRIMIVGGGNIGASLAKRLEQ----TYSVKLIERN--LQRAEKLSE 275 (461)
T ss_dssp EEEEEETTTHHHHHHH----------TTGGGSCCCEEEEECCSHHHHHHHHHHTT----TSEEEEEESC--HHHHHHHHH
T ss_pred EEEEECCCHHHHHHHH----------HCCCCCCCCEEEEECCHHHHHHHHHHHHH----CCCEEEEECC--HHHHHHHHH
T ss_conf 9998323057778876----------44566555279998113899999997522----4726998268--899999998
Q ss_pred CCCCCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCEEEEEC--CCHHHHHHHCC
Q ss_conf 88885788883498998574798567229999854699955--74004555148
Q 004585 689 GGLDISGLMNIKLVHREGNAVIRRHLESLPLETFDSMSHWK--TRLCILTHVLL 740 (744)
Q Consensus 689 ~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~~aDaiIilt--d~~ni~t~~~~ 740 (744)
+|++..| ++||++|+++|+|++|+++|++|++| ||.||+++++.
T Consensus 276 ------~l~~~~V--i~GD~td~~~L~ee~i~~~D~~ia~T~~De~Ni~~~llA 321 (461)
T 4g65_A 276 ------ELENTIV--FCGDAADQELLTEENIDQVDVFIALTNEDETNIMSAMLA 321 (461)
T ss_dssp ------HCTTSEE--EESCTTCHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHH
T ss_pred ------HCCCCEE--EECCCCCHHHHHHCCCHHHCEEEECCCCCHHHHHHHHHH
T ss_conf ------7898648--834545455576618222347998456817899999999
No 3
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=1.00 E-value=1 Score=333.67 Aligned_cols=298 Identities=22% Similarity=0.349 Sum_probs=249.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q ss_conf 99999999976431310379988999999876423788887-78955801155788878999999999999999998-86
Q 004585 293 FATIFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEK-VD 370 (744)
Q Consensus 293 ~~~l~lil~gtl~~~~~E~~s~~dAly~~~~titTvGygd~-~~t~~gRi~~v~lil~Gi~ifa~lig~i~~~i~~~-l~ 370 (744)
+++++++++|+++|+++|+++|.+|+||+++|+||+||||. |.+..+|+++++++++|++++++.++.+++.+.++ ++
T Consensus 25 ~~~~~~~~~~~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 104 (336)
T 1lnq_A 25 LLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQM 104 (336)
T ss_dssp TTTTTSHHHHTTTTTTSSSCCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC------
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999988289899999999988542248898779807799999999999999999999999999989999
Q ss_pred HHCCCCCCEEECCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCH
Q ss_conf 31048651000472999912652899999999821149998079999499378999998210024887279999579998
Q 004585 371 SLRKGKSEVIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLIL 450 (744)
Q Consensus 371 ~~r~Gr~~v~~k~HIIIiG~g~~g~~Li~~L~~~~~~~~~~~iVVLiD~d~e~le~~~~~~~~~~~~~~V~~I~GD~~~~ 450 (744)
+. .++.+...++|++|||+|+.|..++++|... ++ |+++|.|++.++ +.+ .++.++.||++++
T Consensus 105 ~~-~~~~~~~~~~~viI~G~G~~g~~l~~~L~~~------g~-v~vid~~~~~~~-~~~--------~~~~~i~gd~~~~ 167 (336)
T 1lnq_A 105 KL-MGLIDVAKSRHVVICGWSESTLECLRELRGS------EV-FVLAEDENVRKK-VLR--------SGANFVHGDPTRV 167 (336)
T ss_dssp ------------CEEEEESCCHHHHHHHTTGGGS------CE-EEEESCGGGHHH-HHH--------TTCEEEESCTTSH
T ss_pred HH-HHHHHHCCCCCEEEECCCHHHHHHHHHHHHC------CC-EEEEECCHHHHH-HHH--------CCCEEEEECCCCH
T ss_conf 98-7454430468789977867999999999758------95-899958855514-776--------8947998289998
Q ss_pred HHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHCCCCEEEEECCHHHHHH
Q ss_conf 88853685463289994489987710699999999985112899860899965999988898749982668604899999
Q 004585 451 ADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGR 530 (744)
Q Consensus 451 ~~L~rAgi~~A~aVIilt~~~~~~~sD~~NI~i~Lsar~l~p~~~~~IIArv~d~e~~~~lk~~GaD~Ve~I~s~el~a~ 530 (744)
++|+++++++|++++++++ +|+.|+.+++.+|+++|+ .++++++.++++.+.++.+|+|.+ +++.+..+.
T Consensus 168 ~~L~~a~i~~a~~vi~~~~------~d~~n~~~~~~ar~~~~~--~~iiar~~~~~~~~~l~~~G~d~v--i~~~~~~~~ 237 (336)
T 1lnq_A 168 SDLEKANVRGARAVIVDLE------SDSETIHCILGIRKIDES--VRIIAEAERYENIEQLRMAGADQV--ISPFVISGR 237 (336)
T ss_dssp HHHHHTCSTTEEEEEECCS------SHHHHHHHHHHHHTTCTT--SEEEEECSSGGGHHHHHHTTCSEE--ECHHHHHHH
T ss_pred HHHHHCCHHHCCEEEECCC------CCHHHHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHCCCCEE--ECHHHHHHH
T ss_conf 9998559455259999687------618899999999987899--869999889778999997697999--995676999
Q ss_pred HHHHHHCCCCHHHHHHHHHCCC-C---CCEEECCCCCCCCCCHHHHHHHC-CCEEEEEEEEEECCCEEEECCCCCCEECC
Q ss_conf 9999960885799999983378-8---61353149955788687673109-99399999982139907858999952428
Q 004585 531 LMIQCALQPGLAQIWEDILGFE-N---AEFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKE 605 (744)
Q Consensus 531 lLa~~~~~Pg~~~Vl~~Ll~~~-g---~ei~i~~~s~l~Gktl~El~~~~-~~~ivIGI~r~~~~g~~~lnP~~dtvI~~ 605 (744)
.+++.+..|++.+++++++..+ + .++.+.+.+++.|++++|+..+. .++.++||.| +|+..++|+++++|++
T Consensus 238 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~e~~v~~~s~~~Gk~l~el~l~~~~~~~ii~i~r---~~~~~~~P~~~~~l~~ 314 (336)
T 1lnq_A 238 LMSRSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADIHDVTGVIIIGVGR---GDELIIDPPRDYSFRA 314 (336)
T ss_dssp HHHHTSSCSHHHHHHHHHTSSCSSCEEEEEECCSSCSSTTCBHHHHCHHHHHCCEEEEEEC---SSCEESSCCTTCBCCS
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHCCCCCCCCEEEEEEEE---CCEEEECCCCCCEECC
T ss_conf 9999983803799999997076774699999689997598898981516016949999998---9977879299818869
Q ss_pred CCEEEEEEECCCCCC
Q ss_conf 989999982899789
Q 004585 606 GDEVLVIAEDDDTYA 620 (744)
Q Consensus 606 GD~LiVIg~~~~i~~ 620 (744)
||.++++|+.+++.+
T Consensus 315 gD~liv~g~~~~~~~ 329 (336)
T 1lnq_A 315 GDIILGIGKPEEIER 329 (336)
T ss_dssp SCEEEEEECHHHHHH
T ss_pred CCEEEEEECHHHHHH
T ss_conf 999999987999999
No 4
>3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=309.50 Aligned_cols=370 Identities=17% Similarity=0.240 Sum_probs=273.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-EEECCEEEEECCCCC--HHHHHHHHHHHCCCCCCCEEEEEECC
Q ss_conf 557888789999999999999999988631048651-000472999912652--89999999982114999807999949
Q 004585 343 SVSISSGGMLIFAMMLGLVSDAISEKVDSLRKGKSE-VIEKNHILILGWSDK--LGSLLKQLAVANKSIGGGVIVVLAER 419 (744)
Q Consensus 343 ~v~lil~Gi~ifa~lig~i~~~i~~~l~~~r~Gr~~-v~~k~HIIIiG~g~~--g~~Li~~L~~~~~~~~~~~iVVLiD~ 419 (744)
-+..|++|+++|+++++.+++.+.++.. ..|+.. +..++|||||||++. ...++++|..+++...+..+|++.+.
T Consensus 15 ~~~~IlgGI~lFa~~ig~liel~~~r~~--~~G~y~~~~~k~HIIIcG~~~~~~v~~fL~El~~~~~~~~~~~IVIL~~~ 92 (798)
T 3naf_A 15 KLEEILSKLYHIENELARIKKLLGERKK--YGGSYSAVSGRKHIVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNI 92 (798)
T ss_dssp ---------------------------C--CCSSCCCCCSSEEEEEESCCCHHHHHHHHHHHTCTTSCCCCEEEEEEESS
T ss_pred HHEEHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC
T ss_conf 3513468999999999999999998886--47751223688729999279788999999999751222468868999589
Q ss_pred CH-HHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHCCCCCCCCEEEEECCC--CCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 93-7899999821002488727999957999888853685463289994489--98771069999999998511289986
Q 004585 420 DK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARAIIVLASD--ENADQSDARALRVVLSLTGVKEGLRG 496 (744)
Q Consensus 420 d~-e~le~~~~~~~~~~~~~~V~~I~GD~~~~~~L~rAgi~~A~aVIilt~~--~~~~~sD~~NI~i~Lsar~l~p~~~~ 496 (744)
++ .+++..+..+ ..++.|++||++++++|+||++++|+++|++++. .++..+|+.|++++|++|+++|+ .
T Consensus 93 ~p~~eLe~lL~~~-----~~~V~fI~Gdat~~e~L~RAgI~~A~aVIIla~~~~~d~~~~Da~nIl~vLsar~lnP~--i 165 (798)
T 3naf_A 93 SPNLELEALFKRH-----FTQVEFYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPK--I 165 (798)
T ss_dssp CCCHHHHHHHHHT-----TTTEEEEECCSSSHHHHHHTTGGGCSEEEECCCTTCSCHHHHHHHHHHHHHHHHHHSTT--C
T ss_pred CCCHHHHHHHHCC-----CCCEEEEECCCCCHHHHHHCCHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC--C
T ss_conf 9758899876433-----68549999078998999735970388999987855667762459999999999977899--8
Q ss_pred CEEEEECCCCCHHHHHH------CCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHCCC------------------
Q ss_conf 08999659999888987------499826686048999999999960885799999983378------------------
Q 004585 497 HVVVEMSDLDNEPLVKL------VGGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGFE------------------ 552 (744)
Q Consensus 497 ~IIArv~d~e~~~~lk~------~GaD~Ve~I~s~el~a~lLa~~~~~Pg~~~Vl~~Ll~~~------------------ 552 (744)
++||++.++++..+++. +|+|.| |++.++.+++|++++.+||+..++.+|+...
T Consensus 166 ~IIa~~~~~en~~~L~~~~sw~~AGAd~V--I~~~el~g~LLAqs~l~PGls~~i~~LLs~~~~~~~~~~~Wi~eY~~g~ 243 (798)
T 3naf_A 166 RIITQMLQYHNKAHLLNIPSWNWKEGDDA--ICLAELKLGFIAQSCLAQGLSTMLANLFSMRSFIKIEEDTWQKYYLEGV 243 (798)
T ss_dssp CEEEEESCTTGGGSGGGCTTCCTTTTCEE--EEHHHHHHHHHHHHHHSTTHHHHHHHHHSCCCCCCCCSCSHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHCCCCHHCCCCEE--EEHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC
T ss_conf 79999889767999873643011489889--9448999999999863997799999996035655443167899874346
Q ss_pred CCCEEECCC-CCCCCCCHHHHHHH---CCCEEEEEEEEEEC--CCEEEECCCCCCEECCCCEEEEEEECCCCCCCC----
Q ss_conf 861353149-95578868767310---99939999998213--990785899995242898999998289978999----
Q 004585 553 NAEFYIKRW-PQLDDLRFEEVVIS---FPDAIPCGIKVAAE--GGKIILNPDDNYVLKEGDEVLVIAEDDDTYAPG---- 622 (744)
Q Consensus 553 g~ei~i~~~-s~l~Gktl~El~~~---~~~~ivIGI~r~~~--~g~~~lnP~~dtvI~~GD~LiVIg~~~~i~~~~---- 622 (744)
+.++|..+. +.+.|++|.|+... ..+++++||.+... +|++.+||+++++|++||.++|||++.+..+-.
T Consensus 244 g~Eiy~v~l~s~~~G~Tf~ea~~~lr~k~gaiLIGI~r~~~~~~g~iilNP~~d~~L~~GD~LivIa~~~~~vk~a~~yc 323 (798)
T 3naf_A 244 SNEMYTEYLSSAFVGLSFPTVCELCFVKLKLLMIAIEYKSANRESRILINPGNHLKIQEGTLGFFIASDAKEVKRAFFYC 323 (798)
T ss_dssp TBCCEEEECCGGGTTCBHHHHHHHHHHHTCCCEEEEEEECSSSCEEEEESCCTTCBCCTTCEEEECCBTTTGGGGGGSCS
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEEEECCCCCCCEEEECCCCCCEECCCCEEEEEECCHHHHHHHHHHH
T ss_conf 86799985781138979999999988738779999983467889808989999878799998999968789999999999
Q ss_pred C-C------CCC---------CC----------------------------CCCC--------C-CCC-----CCCCCCE
Q ss_conf 9-9------521---------11----------------------------2345--------6-999-----9999951
Q 004585 623 P-L------PEV---------CK----------------------------RSFL--------K-IPD-----PPKYPEK 644 (744)
Q Consensus 623 ~-~------p~v---------~~----------------------------~~~~--------~-~~~-----~~~~~~r 644 (744)
. + |+. .+ |.+- . ... ...-..+
T Consensus 324 ~~ch~~~~~~e~i~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~fhw~~~~~~~~~~l~~~~~~~~~~~nH 403 (798)
T 3naf_A 324 KACHXXXXXXXXXXXXXXXXSPKLMRHDPLLIPGNDQIDNMDSNVKKYDSTGMFHWCAPKEIEKVILTRSEAAMTVLSGH 403 (798)
T ss_dssp SCCCCCGGGGGGSCCSCCCCCCCCCCCC-----------------CCBCTTSCSBCCCCCCGGGTBCCHHHHHHSCCCSC
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEECCCCCHHHHHCCHHHHHHHCCCCC
T ss_conf 86233211111111111236730124674335663112312332233202565100688756674200456665326888
Q ss_pred EEEECCCC------HHHHHHHHHHH-HCC--CCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHH
Q ss_conf 99991541------29999999986-339--9987999906981688898532888857888834989985747985672
Q 004585 645 ILFCGWRR------DIDDMIMVLEA-FLA--PGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLE 715 (744)
Q Consensus 645 ILIvG~g~------~g~~l~~~L~~-~~~--~g~~v~IIe~~p~~Er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~ 715 (744)
|+|||++. ....+++.|++ +.. .-..+.|+.... ..+ +++.. ...+++ |+.++|++..++.|+
T Consensus 404 ivvC~~~~~~~~~~gl~~fv~PLRa~~~~~~~l~~IVil~~~~-~~~-~~w~~----i~~Fp~--Vy~v~Gspl~~~dL~ 475 (798)
T 3naf_A 404 VVVCIFGDVSSALIGLRNLVMPLRASNFHYHELKHIVFVGSIE-YLK-REWET----LHNFPK--VSILPGTPLSRADLR 475 (798)
T ss_dssp EEEEEECCSSSCCCCTHHHHHHHHCSSSCSTTCCCEEEEBCHH-HHH-HHHTT----TTTSSS--EEBCBSCTTCHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCCC-CCH-HHHHH----HHCCCC--EEEECCCCCCHHHHH
T ss_conf 8999806877503545883542420457722469989987887-578-99997----517996--699669989878899
Q ss_pred CCCCCCCCEEEEECCC
Q ss_conf 2999985469995574
Q 004585 716 SLPLETFDSMSHWKTR 731 (744)
Q Consensus 716 e~~I~~aDaiIiltd~ 731 (744)
+++|..++.+||++++
T Consensus 476 ~anI~~a~~~VIls~~ 491 (798)
T 3naf_A 476 AVNINLCDMCVILSAN 491 (798)
T ss_dssp HTTSTTCSEEEEEESS
T ss_pred HHCHHHCCEEEEECCC
T ss_conf 8588769989997689
No 5
>3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A
Probab=1.00 E-value=1 Score=269.49 Aligned_cols=333 Identities=18% Similarity=0.247 Sum_probs=246.4
Q ss_pred ECCEEEEECCCCC--HHHHHHHHHHHCCCCCCCEEEEEECCC-HHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHCCC
Q ss_conf 0472999912652--899999999821149998079999499-3789999982100248872799995799988885368
Q 004585 381 EKNHILILGWSDK--LGSLLKQLAVANKSIGGGVIVVLAERD-KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS 457 (744)
Q Consensus 381 ~k~HIIIiG~g~~--g~~Li~~L~~~~~~~~~~~iVVLiD~d-~e~le~~~~~~~~~~~~~~V~~I~GD~~~~~~L~rAg 457 (744)
.++|||||||.+. ...++++|..+++...+..+|+|.+.+ ..+++.++.++ ..++.+++||++++++|+||+
T Consensus 2 gk~HIIVcG~~~~~sV~~FL~Ef~h~d~~~~~~~VVIL~~~~P~~ELe~lL~~~-----~~~V~fI~Gdat~~edL~RA~ 76 (726)
T 3mt5_A 2 GRKHIVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLELEALFKRH-----FTQVEFYQGSVLNPHDLARVK 76 (726)
T ss_dssp --CEEEEEESCCHHHHHHHHHHHHHHCTTTTTCEEEEECSSCCCHHHHTTHHHH-----CSSEEEECCCTTSHHHHHHTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHH-----CCCEEEEEECCCCHHHHHHCC
T ss_conf 988799977886889999999997436455687489996899979999998740-----586499992789999997519
Q ss_pred CCCCCEEEEECCC--CCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHH------HCCCCEEEEECCHHHHH
Q ss_conf 5463289994489--987710699999999985112899860899965999988898------74998266860489999
Q 004585 458 VSKARAIIVLASD--ENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVK------LVGGELIETVVAHDVIG 529 (744)
Q Consensus 458 i~~A~aVIilt~~--~~~~~sD~~NI~i~Lsar~l~p~~~~~IIArv~d~e~~~~lk------~~GaD~Ve~I~s~el~a 529 (744)
+++|+++|++++. .++.++|++|+.+++++|+++|+ .++||++.++++..+++ .+|+|.| |++.++.+
T Consensus 77 I~~A~aVIIlad~~~~d~~~sDa~nIl~vLsar~lnP~--i~IVA~~~~~en~~~L~ri~sw~~AGAd~V--I~~~el~g 152 (726)
T 3mt5_A 77 IESADACLILANKYCADPDAEDASNIMRVISIKNYHPK--IRIITQMLQYHNKAHLLNIPSWNWKEGDDA--ICLAELKL 152 (726)
T ss_dssp GGGCSEEEEECCTTCSCHHHHHHHHHHHHHHHHHHCTT--SCEEEEESCHHHHGGGGGSTTCCTTTTCEE--EEHHHHHH
T ss_pred HHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC--CCEEEEECCHHHHHHHHHCCCHHHCCCCEE--EEHHHHHH
T ss_conf 50147999976755567752479999999999976899--879999789778998860642121489889--96189999
Q ss_pred HHHHHHHCCCCHHHHHHHHHCC------------------CCCCEEECCC-CCCCCCCHHHHHHH---CCCEEEEEEEEE
Q ss_conf 9999996088579999998337------------------8861353149-95578868767310---999399999982
Q 004585 530 RLMIQCALQPGLAQIWEDILGF------------------ENAEFYIKRW-PQLDDLRFEEVVIS---FPDAIPCGIKVA 587 (744)
Q Consensus 530 ~lLa~~~~~Pg~~~Vl~~Ll~~------------------~g~ei~i~~~-s~l~Gktl~El~~~---~~~~ivIGI~r~ 587 (744)
++|++++.+||+.+++.+|+.. .+.++|..+. +.+.|++|.|+... ..+++++||.+.
T Consensus 153 ~LLAqs~l~PGlst~i~~LLs~~s~~~~~~~~wi~EY~~g~g~EiY~v~l~s~~~G~Tf~ea~~~lr~k~gaiLIGI~r~ 232 (726)
T 3mt5_A 153 GFIAQSCLAQGLSTMLANLFSMRSFIKIEEDTWQKYYLEGVSNEMYTEYLSSAFVGLSFPTVCELCFVKLKLLMIAIEYK 232 (726)
T ss_dssp HHHHHHHHSTTHHHHHHTTTSCCCCCCCCSSSHHHHHHHHHTCEEEEEECCGGGTTSBHHHHHHHHHHTTCCEEEEEEC-
T ss_pred HHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEEEEC
T ss_conf 99999863998799999997234655553267899874457866999857954588799999998886088799999843
Q ss_pred E--CCCEEEECCCCCCEECCCCEEEEEEECCCCCCC----C---C----CCCC---C-----------------------
Q ss_conf 1--399078589999524289899999828997899----9---9----9521---1-----------------------
Q 004585 588 A--EGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP----G---P----LPEV---C----------------------- 628 (744)
Q Consensus 588 ~--~~g~~~lnP~~dtvI~~GD~LiVIg~~~~i~~~----~---~----~p~v---~----------------------- 628 (744)
. .+|++.+||+++++|++||.++|||++.+..+- + + .|+. |
T Consensus 233 ~~~~~g~iilNP~~d~~I~~GD~LiVIa~s~~evkra~~yc~~ch~~~~~~~~i~~c~~~~~~~~~~~~~~~~~~~~~~~ 312 (726)
T 3mt5_A 233 SANRESRILINPGNHLKIQEGTLGFFIASDAKEVKRAFFYCKACHDDITDPKRIKKCGCKRLEDEQPSTLSPKKKQRNGG 312 (726)
T ss_dssp -----CCCEESCCTTCBCCTTCEEEEEESCHHHHHTTTSCCC--------------------------------------
T ss_pred CCCCCCEEEECCCCCCEECCCCEEEEEECCHHHHHHHHEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 56889808989999868789998999979789976554012247765578778532777544556653334210234555
Q ss_pred ---------C----------------CCCCC------CC--------------------CCCCCCCEEEEECCCCH----
Q ss_conf ---------1----------------23456------99--------------------99999951999915412----
Q 004585 629 ---------K----------------RSFLK------IP--------------------DPPKYPEKILFCGWRRD---- 653 (744)
Q Consensus 629 ---------~----------------~~~~~------~~--------------------~~~~~~~rILIvG~g~~---- 653 (744)
+ ..... .+ ....-..+|++|+.|+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~tgmfhw~~~~~l~~~~l~~~~~~~~~~~~HivvC~~~~~~s~~ 392 (726)
T 3mt5_A 313 MRNSPNTSPKLMRHDPLLIPGNDQIDNMDSNVKKYDSTGMFHWCAPKEIEKVILTRSEAAMTVLSGHVVVCIFGDVSSAL 392 (726)
T ss_dssp -------------------------CTTGGGSCCEETTSCBBCCCCCCGGGTBCCHHHHHHSCCCSCEEEEEECCTTSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHCHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 32367788533457853356721010035665532135624315886488875046666553046848999956877752
Q ss_pred --HHHHHHHHHHHCC---CCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCEEEEE
Q ss_conf --9999999986339---99879999069816888985328888578888349899857479856722999985469995
Q 004585 654 --IDDMIMVLEAFLA---PGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFDSMSHW 728 (744)
Q Consensus 654 --g~~l~~~L~~~~~---~g~~v~IIe~~p~~Er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~~aDaiIil 728 (744)
...+++.|++.-- .--.+.++....-.+|+-.... .||++. .+.|.+..+..|++++|..+|.+|||
T Consensus 393 ~gl~~fvmpLRasn~~~~elk~IV~lg~~~~~~~ew~~l~------nfp~iy--~~~Gspl~~~dL~~~~i~~c~~cvil 464 (726)
T 3mt5_A 393 IGLRNLVMPLRASNFHYHELKHIVFVGSIEYLKREWETLH------NFPKVS--ILPGTPLSRADLRAVNINLCDMCVIL 464 (726)
T ss_dssp CCTHHHHTGGGBTTSCGGGCCCEEEEECHHHHHHHHHHHT------TSSSEE--EEESCTTCHHHHHHTTGGGCSEEEEE
T ss_pred HHHHHHEEECCCCCCCHHHCCCEEEECCCCCCHHHHHHHH------CCCCEE--EECCCCCCHHHHHHHCHHHCCEEEEE
T ss_conf 4246621100135588767498899888853799999985------488617--85699687675988587558788996
Q ss_pred CC
Q ss_conf 57
Q 004585 729 KT 730 (744)
Q Consensus 729 td 730 (744)
+.
T Consensus 465 s~ 466 (726)
T 3mt5_A 465 SA 466 (726)
T ss_dssp EC
T ss_pred CC
T ss_conf 58
No 6
>4hpf_A Potassium channel subfamily U member 1; PH-gated, membrane protein, transport Pro; 3.40A {Homo sapiens}
Probab=1.00 E-value=1 Score=258.32 Aligned_cols=332 Identities=18% Similarity=0.238 Sum_probs=232.5
Q ss_pred ECCEEEEECCCCC--HHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHCCCC
Q ss_conf 0472999912652--89999999982114999807999949937899999821002488727999957999888853685
Q 004585 381 EKNHILILGWSDK--LGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (744)
Q Consensus 381 ~k~HIIIiG~g~~--g~~Li~~L~~~~~~~~~~~iVVLiD~d~e~le~~~~~~~~~~~~~~V~~I~GD~~~~~~L~rAgi 458 (744)
.++|||||||++. ...++++|...++......+|++.+.+++. + ++.. .+....+|.|++||++++++|+||++
T Consensus 2 gk~HivvcG~~~~~~l~~fL~ef~~~~~~~~~~~vVil~~~~p~~-e--l~~~-l~~~~~~v~~i~Gs~~~~~dL~ra~i 77 (722)
T 4hpf_A 2 GKKFIVVCGNITVDSVTAFLRNFLRDKSGEINTEIVFLGETPPSL-E--LETI-FKCYLAYTTFISGSAMKWEDLRRVAV 77 (722)
T ss_dssp -CCEEEEESCCCHHHHHHHHTTC--------CCEEECCBSCC---------CC-CCTTTTSEECCBCCSSCHHHHHHHTG
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCH-H--HHHH-HHHHCCEEEEEECCCCCHHHHHHCCC
T ss_conf 988899978897799999999985404402897499973899888-9--9998-76307669999758899999972594
Q ss_pred CCCCEEEEECCC--CCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHH------CCCCEEEEECCHHHHHH
Q ss_conf 463289994489--9877106999999999851128998608999659999888987------49982668604899999
Q 004585 459 SKARAIIVLASD--ENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKL------VGGELIETVVAHDVIGR 530 (744)
Q Consensus 459 ~~A~aVIilt~~--~~~~~sD~~NI~i~Lsar~l~p~~~~~IIArv~d~e~~~~lk~------~GaD~Ve~I~s~el~a~ 530 (744)
++|++||++++. .++..+|+.|+++++++|+++|+ .+++|++.++++..+++. +|+|.| |+..++.++
T Consensus 78 ~~A~av~Il~~~~~~d~~~~D~~~il~~laik~~~p~--~~iivq~~~~~n~~~~~~~~~~~~~gad~V--I~~~el~~~ 153 (722)
T 4hpf_A 78 ESAEACLIIANPLCSDSHAEDISNIMRVLSIKNYDST--TRIIIQILQSHNKVYLPKIPSWNWDTGDNI--ICFAELKLG 153 (722)
T ss_dssp GGSSEEEECCCSSCSCHHHHHHHHHHHHHHHHHHCTT--CCEEEECSSGGGGGHHHHSTTCCTTTTCEE--ECHHHHHHH
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCC--CCEEEEECCHHHHHHHHHHHHHHHCCCCEE--EEHHHHHHH
T ss_conf 2098999968976677516699999999999976899--979999787666899985124565279769--857998999
Q ss_pred HHHHHHCCCCHHHHHHHHHCCC------------------CCCEEECCCC-CCCCCCHHHHHHH---CCCEEEEEEEEEE
Q ss_conf 9999960885799999983378------------------8613531499-5578868767310---9993999999821
Q 004585 531 LMIQCALQPGLAQIWEDILGFE------------------NAEFYIKRWP-QLDDLRFEEVVIS---FPDAIPCGIKVAA 588 (744)
Q Consensus 531 lLa~~~~~Pg~~~Vl~~Ll~~~------------------g~ei~i~~~s-~l~Gktl~El~~~---~~~~ivIGI~r~~ 588 (744)
+|+++|.+||+.+++.+|+... +.|+|....+ .++|++|.|+... ..+++++||.+..
T Consensus 154 lla~s~~~PG~stli~~Ll~~~~~~~~~~~~w~~~Y~~g~~~eiy~~~~~~~~~G~tf~e~~~~~~~~~~~iligi~~~~ 233 (722)
T 4hpf_A 154 FIAQGCLVPGLCTFLTSLFVEQNKKVMPKQTWKKHFLNSMKNKILTQRLSDDFAGMSFPEVARLCFLKMHLLLIAIEYKS 233 (722)
T ss_dssp HHHHHHHSTTHHHHHHHTTCCCCSCCCCSSHHHHHHHHHHTCBCCEEECCGGGTTCBHHHHHHHHHHHSCCEEEEEEC--
T ss_pred HHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEEECCC
T ss_conf 99998548987999999973256553301568999752668628995078011778999999999864685799863053
Q ss_pred ----CCCEEEECCCCCCEECCCCEEEEEEECCCCCC---------------CC---------------CCCCCC------
Q ss_conf ----39907858999952428989999982899789---------------99---------------995211------
Q 004585 589 ----EGGKIILNPDDNYVLKEGDEVLVIAEDDDTYA---------------PG---------------PLPEVC------ 628 (744)
Q Consensus 589 ----~~g~~~lnP~~dtvI~~GD~LiVIg~~~~i~~---------------~~---------------~~p~v~------ 628 (744)
.++++.+||+++++|++||.+++||++.+..+ .. ..|...
T Consensus 234 ~~~~~~~~i~lNP~~~~~i~~~D~~~~Ia~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (722)
T 4hpf_A 234 LFTDGFCGLILNPPPQVRIRKNTLGFFIAETPKDVRRALFYCSVCHDDVFIPELITNCGCKSRSRQHITVPSVKRMKKCL 313 (722)
T ss_dssp -----CCCCEESCCTTCBCCTTCEEEEEBSCHHHHHGGGC----------------------------------------
T ss_pred CCCCCCCEEEECCCCCEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 32367873998899883777998899997988997666420000122355566776458854344566677655443334
Q ss_pred C--------------------------------------------CCCCC--------------CCCCCCCCCEEEEECC
Q ss_conf 1--------------------------------------------23456--------------9999999951999915
Q 004585 629 K--------------------------------------------RSFLK--------------IPDPPKYPEKILFCGW 650 (744)
Q Consensus 629 ~--------------------------------------------~~~~~--------------~~~~~~~~~rILIvG~ 650 (744)
. +.+.. ......-..+|+|||-
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~nhivvc~~ 393 (722)
T 4hpf_A 314 KGISSRISGQDSPPRVSASTSSISNFTTRTLQHDVEQDSDQLDSSGMFHWCKPTSLDKVTLKRTGKSKYKFRNHIVACVF 393 (722)
T ss_dssp ---------------------------------------CCBCSSSSBBCCCCCCHHHHBCCCCC---CCCCSCEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHCCCCCCEEEEEC
T ss_conf 45565546767863344555445677653222344566433355674035687551122201224442034687799953
Q ss_pred C------CHHHHHHHHHHHHCCCC---CEEEEECCC-CCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHCCCCC
Q ss_conf 4------12999999998633999---879999069-8168889853288885788883498998574798567229999
Q 004585 651 R------RDIDDMIMVLEAFLAPG---SELWMLNEV-PEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (744)
Q Consensus 651 g------~~g~~l~~~L~~~~~~g---~~v~IIe~~-p~~Er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~ 720 (744)
+ ...+.++..|+++-.+. ..+.++... |. .+.+.. ...+++ |.+++|++..++.|+++||.
T Consensus 394 ~~~~~~~~gL~~fi~PLRa~~~~~~el~pIViL~~~~~~---~~~w~~----i~~Fp~--Vy~~~GSpl~~~DL~ragi~ 464 (722)
T 4hpf_A 394 GDAHSAPMGLRNFVMPLRASNYTRKELKDIVFIGSLDYL---QREWRF----LWNFPQ--IYILPGCALYSGDLHAANIE 464 (722)
T ss_dssp CCTTSCCCCSHHHHGGGGBTTSCGGGCCCEEEEECHHHH---HHHGGG----GTTCSS--EEEEESCTTCHHHHHHTTGG
T ss_pred CCCCCCCCCCHHHEEECCCCCCCCCCCCCEEEEECCCCC---HHHHHH----HHCCCC--EEEEECCCCCHHHHHHCCCC
T ss_conf 684423342223124311223552457998998389988---899998----765898--79998986878888760730
Q ss_pred CCCEEEEEC
Q ss_conf 854699955
Q 004585 721 TFDSMSHWK 729 (744)
Q Consensus 721 ~aDaiIilt 729 (744)
.|+.+|+++
T Consensus 465 ~a~~vVIl~ 473 (722)
T 4hpf_A 465 QCSMCAVLS 473 (722)
T ss_dssp GCSEEEEEC
T ss_pred CCCEEEEEC
T ss_conf 115899986
No 7
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=1.00 E-value=1 Score=207.53 Aligned_cols=206 Identities=16% Similarity=0.215 Sum_probs=172.2
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHCCCCCCCC
Q ss_conf 72999912652899999999821149998079999499378999998210024887279999579998888536854632
Q 004585 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (744)
Q Consensus 383 ~HIIIiG~g~~g~~Li~~L~~~~~~~~~~~iVVLiD~d~e~le~~~~~~~~~~~~~~V~~I~GD~~~~~~L~rAgi~~A~ 462 (744)
+|++|||||+.|..++++|...+ +.|+++|.|++.++.. . .++.||+++++.|+++++++|+
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~g------~~v~vid~d~~~~~~~-----------~-~~i~gD~t~~~~L~~agi~~ad 410 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRKP------VPFILIDRQESPVCND-----------H-VVVYGDATVGQTLRQAGIDRAS 410 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTT------CCEEEEESSCCSSCCS-----------S-CEEESCSSSSTHHHHHTTTSCS
T ss_pred CCEEEECCCHHHHHHHHHHHHCC------CCEEEEECCHHHHHHC-----------C-CEEEECCCCHHHHHHCCCCCCC
T ss_conf 98899898878999999999879------9789997886898626-----------8-7899078998999864924139
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCHH
Q ss_conf 89994489987710699999999985112899860899965999988898749982668604899999999996088579
Q 004585 463 AIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPGLA 542 (744)
Q Consensus 463 aVIilt~~~~~~~sD~~NI~i~Lsar~l~p~~~~~IIArv~d~e~~~~lk~~GaD~Ve~I~s~el~a~lLa~~~~~Pg~~ 542 (744)
++|++++ +|+.|+.+|+.+|++++. .++|++++++++.+.++.+|+|.| +.+....++.+++.+..+.+.
T Consensus 411 ~vi~~~~------~d~~ni~~~~~ak~l~~~--~~iiar~~~~~~~~~l~~~G~d~v--i~p~~~~~~~i~~~~~~~~~~ 480 (565)
T 4gx0_A 411 GIIVTTN------DDSTNIFLTLACRHLHSH--IRIVARANGEENVDQLYAAGADFV--VSNASVGANILGNLLEHKESA 480 (565)
T ss_dssp EEEECCS------CHHHHHHHHHHHHHHCSS--SEEEEEESSTTSHHHHHHHTCSEE--EEHHHHHHHHHHHHHHCC---
T ss_pred EEEEECC------CCHHHHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHCCCCEE--ECCCHHHHHHHHHHHCCHHHH
T ss_conf 9999779------826799999999987899--879999788777999997699899--814007999999973564450
Q ss_pred HHHHHHHCCCCCC-EEECCCCCCCCCCHHHHHHHC-CCEEEEEEEEEECCCEEEECCCCCCEECCCCEEEEEEECCCCCC
Q ss_conf 9999983378861-353149955788687673109-99399999982139907858999952428989999982899789
Q 004585 543 QIWEDILGFENAE-FYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYA 620 (744)
Q Consensus 543 ~Vl~~Ll~~~g~e-i~i~~~s~l~Gktl~El~~~~-~~~ivIGI~r~~~~g~~~lnP~~dtvI~~GD~LiVIg~~~~i~~ 620 (744)
.+.+ +.+ +.+...+++.|++++|+..+. .++.++||.|. ++|+...+|.++++|++||.++++|+.+++.+
T Consensus 481 ~~~~------~~~~~~v~~~s~~~Gk~l~el~l~~~~~~~v~aI~R~-~~~~~~~~p~~~~~l~~GD~liv~g~~~~i~~ 553 (565)
T 4gx0_A 481 FLSE------GMAVFRRPLPPAMAGKTIAETRLRPLTGCSIVAIEAP-DRADILISPPPETILAEGARLILIGTSEQEKT 553 (565)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHC------CEEEEEECCCCCCCCCCHHHCCHHHHCCCEEEEEEEC-CCCCEEECCCCCCEECCCCEEEEEECHHHHHH
T ss_conf 3515------7299997289875888889913366529789999967-99955889699878789999999988999999
Q ss_pred CCC
Q ss_conf 999
Q 004585 621 PGP 623 (744)
Q Consensus 621 ~~~ 623 (744)
+..
T Consensus 554 ~~~ 556 (565)
T 4gx0_A 554 FDQ 556 (565)
T ss_dssp ---
T ss_pred HHH
T ss_conf 999
No 8
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=1.00 E-value=1 Score=201.83 Aligned_cols=219 Identities=25% Similarity=0.389 Sum_probs=182.6
Q ss_pred CCCCCEEECCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHH
Q ss_conf 48651000472999912652899999999821149998079999499378999998210024887279999579998888
Q 004585 374 KGKSEVIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADL 453 (744)
Q Consensus 374 ~Gr~~v~~k~HIIIiG~g~~g~~Li~~L~~~~~~~~~~~iVVLiD~d~e~le~~~~~~~~~~~~~~V~~I~GD~~~~~~L 453 (744)
+|+.++..++|++|||+|+.|..++++|...+ + |+++|++++.++.+. .++.++.||+++++.|
T Consensus 1 ~G~~~~~~~~~viI~G~G~~G~~la~~L~~~g------~-v~vid~~~~~~~~~~---------~~~~~i~gd~~~~~~l 64 (234)
T 2aef_A 1 MGLIDVAKSRHVVICGWSESTLECLRELRGSE------V-FVLAEDENVRKKVLR---------SGANFVHGDPTRVSDL 64 (234)
T ss_dssp ---------CEEEEESCCHHHHHHHHHSTTSE------E-EEEESCGGGHHHHHH---------TTCEEEESCTTCHHHH
T ss_pred CCCCCCCCCCEEEEECCCHHHHHHHHHHHHCC------E-EEEEECCHHHHHHHH---------CCCEEEECCCCCHHHH
T ss_conf 99888787897999899768999999987499------2-999978989999986---------6981998488778999
Q ss_pred HCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHCCCCEEEEECCHHHHHHHHH
Q ss_conf 53685463289994489987710699999999985112899860899965999988898749982668604899999999
Q 004585 454 KKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMI 533 (744)
Q Consensus 454 ~rAgi~~A~aVIilt~~~~~~~sD~~NI~i~Lsar~l~p~~~~~IIArv~d~e~~~~lk~~GaD~Ve~I~s~el~a~lLa 533 (744)
+++++++|+.+|++++ +|+.|+.+++.+|+++++ .++|+++.++++.+.++.+|+|.+ +.+.+.++..|+
T Consensus 65 ~~a~i~~ad~vi~~~~------~d~~n~~~~~~a~~~~~~--~~iia~~~~~~~~~~l~~~G~~~v--i~p~~~~a~~l~ 134 (234)
T 2aef_A 65 EKANVRGARAVIVDLE------SDSETIHCILGIRKIDES--VRIIAEAERYENIEQLRMAGADQV--ISPFVISGRLMS 134 (234)
T ss_dssp HHTTCTTCSEEEECCS------CHHHHHHHHHHHHHHCSS--SEEEEECSSGGGHHHHHHHTCSEE--ECHHHHHHHHHH
T ss_pred HHCCCCHHCEEEECCC------CCHHHHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHCCCCEE--ECHHHHHHHHHH
T ss_conf 8669403259999179------838899999999987899--869999788767999997799999--988887999999
Q ss_pred HHHCCCCHHHHHHHHHCCC-C---CCEEECCCCCCCCCCHHHHHHHC-CCEEEEEEEEEECCCEEEECCCCCCEECCCCE
Q ss_conf 9960885799999983378-8---61353149955788687673109-99399999982139907858999952428989
Q 004585 534 QCALQPGLAQIWEDILGFE-N---AEFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDE 608 (744)
Q Consensus 534 ~~~~~Pg~~~Vl~~Ll~~~-g---~ei~i~~~s~l~Gktl~El~~~~-~~~ivIGI~r~~~~g~~~lnP~~dtvI~~GD~ 608 (744)
+.+..|++..++++++... + .++.+.+.+++.|++++|+..+. +++.+++|.| +|+..++|.++++|++||.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~V~~~s~~~Gk~l~el~~~~~~~~~vi~i~R---~~~~~~~p~~~~~l~~GD~ 211 (234)
T 2aef_A 135 RSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADIHDVTGVIIIGVGR---GDELIIDPPRDYSFRAGDI 211 (234)
T ss_dssp HTSSCSHHHHHHHHHHC---CCEEEEEECCTTBTTTTCBHHHHCHHHHHCCEEEEEEE---TTEEEESCCTTCBCCTTCE
T ss_pred HHHCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCEEEEEEEE---CCEEEECCCCCCEECCCCE
T ss_conf 9982912899999996177884699999799996289798993430406929999998---9937848999878879999
Q ss_pred EEEEEECCCCCCC
Q ss_conf 9999828997899
Q 004585 609 VLVIAEDDDTYAP 621 (744)
Q Consensus 609 LiVIg~~~~i~~~ 621 (744)
++++|+.+++.++
T Consensus 212 l~v~g~~~~l~~~ 224 (234)
T 2aef_A 212 ILGIGKPEEIERL 224 (234)
T ss_dssp EEEEECHHHHHHH
T ss_pred EEEEECHHHHHHH
T ss_conf 9999889999999
No 9
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=188.50 Aligned_cols=208 Identities=17% Similarity=0.190 Sum_probs=172.5
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHCCCCCCCC
Q ss_conf 72999912652899999999821149998079999499378999998210024887279999579998888536854632
Q 004585 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (744)
Q Consensus 383 ~HIIIiG~g~~g~~Li~~L~~~~~~~~~~~iVVLiD~d~e~le~~~~~~~~~~~~~~V~~I~GD~~~~~~L~rAgi~~A~ 462 (744)
++++|||+|..|..+++.|...+ +.|+++|.|++.++.+.+. .++.++.||+++++.|+++++++|+
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g------~~v~vid~~~~~~~~l~~~-------~~~~~i~gd~~~~~~l~~a~i~~ad 67 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRK------YGVVIINKDRELCEEFAKK-------LKATIIHGDGSHKEILRDAEVSKND 67 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTT------CCEEEEESCHHHHHHHHHH-------SSSEEEESCTTSHHHHHHHTCCTTC
T ss_pred CEEEEECCCHHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHH-------CCCEEEECCCCCHHHHHHCCCCCCC
T ss_conf 98999989889999999999689------9299997998999999987-------6986999279898899866966289
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCHH
Q ss_conf 89994489987710699999999985112899860899965999988898749982668604899999999996088579
Q 004585 463 AIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPGLA 542 (744)
Q Consensus 463 aVIilt~~~~~~~sD~~NI~i~Lsar~l~p~~~~~IIArv~d~e~~~~lk~~GaD~Ve~I~s~el~a~lLa~~~~~Pg~~ 542 (744)
.+|++++ +|+.|+.++..++.+++. .++|+++.++++.+.++.+|+|.| +.+.+..++.+++.+..|++.
T Consensus 68 ~vi~~~~------~d~~n~~~~~~a~~~~~~--~~iia~~~~~~~~~~l~~~G~d~v--i~p~~~~~~~l~~~~~~~~~~ 137 (218)
T 3l4b_C 68 VVVILTP------RDEVNLFIAQLVMKDFGV--KRVVSLVNDPGNMEIFKKMGITTV--LNLTTLITNTVEALIFPDEFS 137 (218)
T ss_dssp EEEECCS------CHHHHHHHHHHHHHTSCC--CEEEECCCSGGGHHHHHHHTCEEC--CCHHHHHHHHHHHHHCTTSCE
T ss_pred EEEEECC------CCHHHHHHHHHHHHHCCC--CEEEEEEECCCHHHHHHHCCCCEE--ECHHHHHHHHHHHHHCCCCCE
T ss_conf 9999369------968999999999987699--759999948446899987799999--999999999999971467742
Q ss_pred HHHHHHHCCCC---CCEEECCCCCCCCCCHHHHHHHCCCEEEEEEEEEECCCEEEECCCCCCEECCCCEEEEEEECCCCC
Q ss_conf 99999833788---613531499557886876731099939999998213990785899995242898999998289978
Q 004585 543 QIWEDILGFEN---AEFYIKRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTY 619 (744)
Q Consensus 543 ~Vl~~Ll~~~g---~ei~i~~~s~l~Gktl~El~~~~~~~ivIGI~r~~~~g~~~lnP~~dtvI~~GD~LiVIg~~~~i~ 619 (744)
+++. + .++ .++.+.+.+++.|++++|+... .++.+++|.| +|+. ++|.++++|++||.++++|+.+++.
T Consensus 138 ~~~~--~-~~~~~~~e~~v~~~s~~~gk~l~el~~~-~~~~i~~i~R---~~~~-~~p~~~~~l~~gD~l~v~g~~~~~~ 209 (218)
T 3l4b_C 138 SIIP--L-EQGIEFLSVNVEEDSPVVGKKLKDLPLP-RDSIIAAIVR---GGVL-VVPRGDTEILSGDKLYVIVSAEAKE 209 (218)
T ss_dssp ECSC--C-STTEEEEEEECCTTCSSTTCBTTTSCCC-TTEEEEEEEE---SSCE-ECCCTTCBCCTTEEEEEEEEGGGHH
T ss_pred EEEE--E-CCCCEEEEEEECCCCCCCCCCHHHCCCC-CCCEEEEEEE---CCEE-ECCCCCCEECCCCEEEEEECHHHHH
T ss_conf 7888--2-7984999999799995368899998999-9949999998---9999-8579998888899999998899999
Q ss_pred CC
Q ss_conf 99
Q 004585 620 AP 621 (744)
Q Consensus 620 ~~ 621 (744)
++
T Consensus 210 ~~ 211 (218)
T 3l4b_C 210 TV 211 (218)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 10
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=1.00 E-value=1 Score=187.77 Aligned_cols=208 Identities=15% Similarity=0.157 Sum_probs=168.0
Q ss_pred ECCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHCCCCCC
Q ss_conf 04729999126528999999998211499980799994993789999982100248872799995799988885368546
Q 004585 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (744)
Q Consensus 381 ~k~HIIIiG~g~~g~~Li~~L~~~~~~~~~~~iVVLiD~d~e~le~~~~~~~~~~~~~~V~~I~GD~~~~~~L~rAgi~~ 460 (744)
...+++|+|+|+.|..+++.|.. .+.|.++|.|+++++.+.+++ .+..+++||+++++.|+++++++
T Consensus 234 ~~~~v~I~GgG~ig~~lA~~L~~-------~~~v~iIE~d~~r~~~la~~l------~~~~Vi~GD~td~~~L~ee~i~~ 300 (461)
T 4g65_A 234 PYRRIMIVGGGNIGASLAKRLEQ-------TYSVKLIERNLQRAEKLSEEL------ENTIVFCGDAADQELLTEENIDQ 300 (461)
T ss_dssp CCCEEEEECCSHHHHHHHHHHTT-------TSEEEEEESCHHHHHHHHHHC------TTSEEEESCTTCHHHHHHTTGGG
T ss_pred CCCEEEEECCHHHHHHHHHHHHH-------CCCEEEEECCHHHHHHHHHHC------CCCEEEECCCCCHHHHHHCCCHH
T ss_conf 55279998113899999997522-------472699826889999999878------98648834545455576618222
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCC
Q ss_conf 32899944899877106999999999851128998608999659999888987499826686048999999999960885
Q 004585 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPG 540 (744)
Q Consensus 461 A~aVIilt~~~~~~~sD~~NI~i~Lsar~l~p~~~~~IIArv~d~e~~~~lk~~GaD~Ve~I~s~el~a~lLa~~~~~Pg 540 (744)
|+++|++|++ |+.|+.+|+.+|++.. .++|++++++++.+.++..|+|.+ +.+...++..+.+.+..++
T Consensus 301 ~D~~ia~T~~------De~Ni~~~llAk~~gv---~kvIa~vn~~~~~~l~~~~gid~v--isp~~~~a~~I~~~i~~~~ 369 (461)
T 4g65_A 301 VDVFIALTNE------DETNIMSAMLAKRMGA---KKVMVLIQRGAYVDLVQGGVIDVA--ISPQQATISALLTHVRRAD 369 (461)
T ss_dssp CSEEEECCSC------HHHHHHHHHHHHHTTC---SEEEEECSCHHHHHHHCSSSSCEE--ECHHHHHHHHHHHHHHHTT
T ss_pred HCEEEECCCC------CHHHHHHHHHHHHCCC---CCCCCCCCCCCHHHHHHCCCCCEE--ECHHHHHHHHHHHHHHCCC
T ss_conf 3479984568------1789999999997399---640000346303444421465402--0789999999999854256
Q ss_pred HHHHHHHHHCCCC--CCEEE---CCCCCCCCCCHHHHHHHCCCEEEEEEEEEECCCEEEECCCCCCEECCCCEEEEEE-E
Q ss_conf 7999999833788--61353---1499557886876731099939999998213990785899995242898999998-2
Q 004585 541 LAQIWEDILGFEN--AEFYI---KRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIA-E 614 (744)
Q Consensus 541 ~~~Vl~~Ll~~~g--~ei~i---~~~s~l~Gktl~El~~~~~~~ivIGI~r~~~~g~~~lnP~~dtvI~~GD~LiVIg-~ 614 (744)
+.++.. +..... -|+.+ .+.+++.|++++|+... .++++++|.| +|+. +.|.++++|++||+++++. +
T Consensus 370 v~~v~~-l~~g~ae~iE~~~~~~~~~S~~vGk~l~dl~lp-~g~~I~aI~R---~~~~-iiP~gdt~i~~gD~vivf~~~ 443 (461)
T 4g65_A 370 IVNVSS-LRRGAAEAIEAVAHGDESNSKVVGRAVGDIKLP-PGTTIGAIVR---GEEV-LIAHDRTVIEQDDHVVMFLVD 443 (461)
T ss_dssp CCCEEE-CGGGSCEEEEEECCSCGGGCSSTTSBGGGSCCC-TTEEEEEEEE---TTEE-EECCTTCBCCTTCEEEEEESC
T ss_pred CCEEEE-ECCCCEEEEEEEEECCCCCCCCCCCCHHHCCCC-CCCEEEEEEE---CCEE-ECCCCCCEECCCCEEEEEECC
T ss_conf 532798-158853799999964788985379599987999-9969999998---9999-917999788899999999868
Q ss_pred CCCC
Q ss_conf 8997
Q 004585 615 DDDT 618 (744)
Q Consensus 615 ~~~i 618 (744)
.+.+
T Consensus 444 ~~~i 447 (461)
T 4g65_A 444 KKYV 447 (461)
T ss_dssp GGGH
T ss_pred HHHH
T ss_conf 8789
Done!