Query 004587
Match_columns 743
No_of_seqs 353 out of 2917
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 01:50:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004587.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004587hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0978 E3 ubiquitin ligase in 100.0 2.9E-41 6.3E-46 354.1 71.1 686 18-743 3-698 (698)
2 KOG0161 Myosin class II heavy 99.9 1.5E-15 3.2E-20 178.9 71.8 503 31-558 1048-1564(1930)
3 KOG0161 Myosin class II heavy 99.8 6.9E-12 1.5E-16 148.5 78.4 108 454-561 1319-1427(1930)
4 TIGR00606 rad50 rad50. This fa 99.8 4.9E-11 1.1E-15 144.7 77.0 442 34-496 265-783 (1311)
5 PF01576 Myosin_tail_1: Myosin 99.7 1.2E-18 2.6E-23 198.3 0.0 489 45-558 4-506 (859)
6 TIGR02169 SMC_prok_A chromosom 99.7 4.9E-09 1.1E-13 129.1 80.8 16 418-433 679-694 (1164)
7 TIGR02168 SMC_prok_B chromosom 99.7 3.8E-09 8.2E-14 130.4 79.4 20 417-436 674-693 (1179)
8 COG1196 Smc Chromosome segrega 99.7 3.4E-09 7.4E-14 127.2 76.1 25 277-301 472-496 (1163)
9 KOG4674 Uncharacterized conser 99.7 2.4E-08 5.1E-13 117.0 75.7 112 17-128 640-751 (1822)
10 COG1196 Smc Chromosome segrega 99.6 5.1E-08 1.1E-12 117.2 81.4 22 29-50 177-198 (1163)
11 PF10174 Cast: RIM-binding pro 99.6 1.1E-08 2.5E-13 113.0 67.9 138 491-629 464-601 (775)
12 TIGR00606 rad50 rad50. This fa 99.6 1.4E-08 3.1E-13 123.5 75.2 37 314-350 696-732 (1311)
13 TIGR02168 SMC_prok_B chromosom 99.6 2E-08 4.3E-13 124.1 77.8 13 655-667 967-979 (1179)
14 PRK02224 chromosome segregatio 99.6 4.2E-08 9.1E-13 116.1 75.4 21 417-437 472-492 (880)
15 PF10174 Cast: RIM-binding pro 99.6 7E-08 1.5E-12 106.9 68.3 119 277-395 285-408 (775)
16 KOG4674 Uncharacterized conser 99.6 1.5E-07 3.3E-12 110.4 76.1 126 278-403 1059-1198(1822)
17 KOG0996 Structural maintenance 99.6 6.8E-08 1.5E-12 106.9 64.4 85 174-258 427-517 (1293)
18 PRK03918 chromosome segregatio 99.6 1.5E-07 3.3E-12 111.6 71.6 13 726-738 815-827 (880)
19 PRK03918 chromosome segregatio 99.5 5E-07 1.1E-11 107.3 70.3 38 593-630 662-699 (880)
20 PF01576 Myosin_tail_1: Myosin 99.5 3.4E-15 7.4E-20 170.3 0.0 216 447-669 564-787 (859)
21 KOG0933 Structural maintenance 99.4 5.6E-07 1.2E-11 98.1 56.8 192 471-662 741-936 (1174)
22 KOG0320 Predicted E3 ubiquitin 99.4 3.8E-14 8.2E-19 121.7 2.1 55 688-743 131-187 (187)
23 PLN03208 E3 ubiquitin-protein 99.4 1.9E-13 4.1E-18 121.9 3.2 56 687-742 17-87 (193)
24 KOG0933 Structural maintenance 99.4 1.9E-06 4.2E-11 94.0 68.4 26 279-304 479-504 (1174)
25 PF15227 zf-C3HC4_4: zinc fing 99.4 4.9E-13 1.1E-17 89.3 3.3 39 691-729 1-42 (42)
26 smart00504 Ubox Modified RING 99.3 1.5E-12 3.2E-17 98.1 3.4 53 689-742 2-54 (63)
27 KOG0287 Postreplication repair 99.3 7.7E-13 1.7E-17 124.6 0.5 58 685-743 20-77 (442)
28 KOG0823 Predicted E3 ubiquitin 99.2 2.6E-12 5.6E-17 116.5 2.7 57 686-742 45-103 (230)
29 COG5432 RAD18 RING-finger-cont 99.2 2.3E-12 5.1E-17 118.7 1.4 57 685-742 22-78 (391)
30 KOG0317 Predicted E3 ubiquitin 99.2 4.2E-12 9.1E-17 118.6 3.0 53 688-741 239-291 (293)
31 PF13923 zf-C3HC4_2: Zinc fing 99.2 6.5E-12 1.4E-16 83.3 2.5 38 691-729 1-39 (39)
32 TIGR00599 rad18 DNA repair pro 99.2 6.9E-12 1.5E-16 127.0 2.7 59 683-742 21-79 (397)
33 KOG2164 Predicted E3 ubiquitin 99.2 6.5E-12 1.4E-16 126.9 2.1 56 688-743 186-245 (513)
34 PF14835 zf-RING_6: zf-RING of 99.2 1.6E-11 3.5E-16 86.6 2.7 56 683-741 2-58 (65)
35 PF13920 zf-C3HC4_3: Zinc fing 99.2 2.4E-11 5.1E-16 85.9 3.3 45 689-734 3-48 (50)
36 PF04564 U-box: U-box domain; 99.1 1.7E-11 3.6E-16 94.2 2.6 55 688-742 4-58 (73)
37 PF12128 DUF3584: Protein of u 99.1 0.00011 2.4E-09 89.0 78.9 41 606-646 797-837 (1201)
38 PRK01156 chromosome segregatio 99.1 0.00012 2.5E-09 87.1 69.8 6 327-332 423-428 (895)
39 PRK01156 chromosome segregatio 99.1 0.00012 2.5E-09 87.1 72.5 29 374-402 418-446 (895)
40 PF00097 zf-C3HC4: Zinc finger 99.1 7.8E-11 1.7E-15 79.6 2.8 39 691-729 1-41 (41)
41 PF13445 zf-RING_UBOX: RING-ty 99.1 4.7E-11 1E-15 79.3 1.6 36 691-727 1-43 (43)
42 PF14634 zf-RING_5: zinc-RING 99.1 1.1E-10 2.3E-15 79.6 2.9 41 690-731 1-44 (44)
43 KOG0964 Structural maintenance 99.0 8.5E-05 1.8E-09 81.3 66.3 41 223-263 331-371 (1200)
44 KOG0996 Structural maintenance 99.0 0.00011 2.4E-09 82.4 75.7 134 460-593 903-1036(1293)
45 PF13639 zf-RING_2: Ring finge 99.0 1E-10 2.2E-15 80.2 1.5 40 690-730 2-44 (44)
46 KOG0978 E3 ubiquitin ligase in 99.0 0.0001 2.2E-09 79.9 64.2 68 67-134 56-123 (698)
47 PF05701 WEMBL: Weak chloropla 99.0 0.00015 3.3E-09 79.2 57.0 54 610-663 371-424 (522)
48 COG1579 Zn-ribbon protein, pos 98.9 8.9E-07 1.9E-11 83.2 25.6 156 512-670 16-173 (239)
49 PHA02929 N1R/p28-like protein; 98.9 3.8E-10 8.2E-15 106.3 3.3 47 688-735 174-228 (238)
50 PHA02926 zinc finger-like prot 98.9 5.1E-10 1.1E-14 100.5 3.6 49 687-735 169-231 (242)
51 cd00162 RING RING-finger (Real 98.9 8.5E-10 1.8E-14 76.8 3.1 44 690-733 1-45 (45)
52 PRK04863 mukB cell division pr 98.9 0.00087 1.9E-08 81.2 74.2 59 607-665 1063-1121(1486)
53 COG5574 PEX10 RING-finger-cont 98.9 8.5E-10 1.8E-14 101.9 2.0 50 689-738 216-266 (271)
54 smart00184 RING Ring finger. E 98.9 1.6E-09 3.4E-14 72.8 2.7 39 691-729 1-39 (39)
55 PF00261 Tropomyosin: Tropomyo 98.8 2E-05 4.2E-10 76.8 31.5 197 459-655 31-227 (237)
56 KOG0964 Structural maintenance 98.8 0.00047 1E-08 75.7 69.7 45 168-212 330-374 (1200)
57 KOG4172 Predicted E3 ubiquitin 98.8 7.6E-10 1.7E-14 73.9 -0.5 45 689-733 8-53 (62)
58 KOG0018 Structural maintenance 98.8 0.00076 1.6E-08 75.3 53.7 108 411-531 650-757 (1141)
59 KOG0976 Rho/Rac1-interacting s 98.8 0.00063 1.4E-08 72.8 59.3 65 69-133 95-159 (1265)
60 PF00261 Tropomyosin: Tropomyo 98.8 4.9E-05 1.1E-09 74.0 31.4 195 455-649 20-214 (237)
61 KOG0971 Microtubule-associated 98.7 0.00081 1.8E-08 73.2 42.3 54 608-661 494-547 (1243)
62 KOG0971 Microtubule-associated 98.7 0.00094 2E-08 72.7 45.7 151 370-533 323-475 (1243)
63 KOG4643 Uncharacterized coiled 98.7 0.0013 2.8E-08 72.7 54.2 52 459-510 410-461 (1195)
64 KOG0977 Nuclear envelope prote 98.7 0.00046 1E-08 72.9 36.9 36 366-401 43-78 (546)
65 KOG4643 Uncharacterized coiled 98.6 0.0018 3.9E-08 71.6 56.9 58 67-124 171-228 (1195)
66 KOG0962 DNA repair protein RAD 98.6 0.0034 7.3E-08 72.7 70.5 97 37-133 267-364 (1294)
67 PRK04863 mukB cell division pr 98.6 0.0052 1.1E-07 74.7 73.1 59 635-694 1063-1122(1486)
68 KOG0976 Rho/Rac1-interacting s 98.6 0.0023 5.1E-08 68.7 54.7 25 708-732 633-657 (1265)
69 PF05701 WEMBL: Weak chloropla 98.5 0.0032 6.9E-08 68.9 64.5 33 174-206 117-149 (522)
70 PF12128 DUF3584: Protein of u 98.5 0.0078 1.7E-07 73.3 73.6 10 639-648 902-911 (1201)
71 KOG0311 Predicted E3 ubiquitin 98.5 1.4E-08 2.9E-13 97.8 -1.0 53 683-735 38-91 (381)
72 PF05557 MAD: Mitotic checkpoi 98.5 9.5E-07 2.1E-11 101.0 13.2 24 646-669 606-629 (722)
73 KOG0824 Predicted E3 ubiquitin 98.5 4.7E-08 1E-12 92.1 2.0 48 689-736 8-55 (324)
74 PF07888 CALCOCO1: Calcium bin 98.5 0.0031 6.7E-08 66.9 47.5 47 619-665 411-457 (546)
75 TIGR00570 cdk7 CDK-activating 98.5 9E-08 2E-12 92.9 3.8 39 705-743 25-63 (309)
76 PF07888 CALCOCO1: Calcium bin 98.4 0.0046 9.9E-08 65.6 47.4 44 626-669 411-454 (546)
77 KOG0994 Extracellular matrix g 98.4 0.0072 1.6E-07 67.8 62.9 52 613-664 1691-1742(1758)
78 KOG0977 Nuclear envelope prote 98.4 0.0047 1E-07 65.6 38.6 89 172-264 41-129 (546)
79 KOG0250 DNA repair protein RAD 98.4 0.0083 1.8E-07 67.9 65.0 20 708-728 995-1014(1074)
80 KOG2879 Predicted E3 ubiquitin 98.4 1.6E-07 3.5E-12 87.2 2.9 47 688-734 239-287 (298)
81 PF00038 Filament: Intermediat 98.4 0.0044 9.5E-08 63.8 40.7 107 458-564 196-306 (312)
82 COG5152 Uncharacterized conser 98.4 9.2E-08 2E-12 83.5 1.0 46 689-735 197-242 (259)
83 PF00038 Filament: Intermediat 98.4 0.0047 1E-07 63.6 39.7 12 677-688 294-305 (312)
84 PF12678 zf-rbx1: RING-H2 zinc 98.3 2.7E-07 5.9E-12 70.6 2.8 40 690-730 21-73 (73)
85 KOG0962 DNA repair protein RAD 98.3 0.014 3E-07 67.9 61.2 122 496-619 1012-1139(1294)
86 PF14447 Prok-RING_4: Prokaryo 98.3 2.4E-07 5.2E-12 63.5 2.0 48 688-738 7-54 (55)
87 KOG2177 Predicted E3 ubiquitin 98.3 2E-07 4.4E-12 98.8 1.9 46 685-731 10-55 (386)
88 COG5243 HRD1 HRD ubiquitin lig 98.3 3.7E-07 8E-12 88.1 3.0 45 688-733 287-344 (491)
89 PRK04778 septation ring format 98.3 0.013 2.9E-07 65.2 55.0 26 482-507 314-339 (569)
90 PF06160 EzrA: Septation ring 98.3 0.013 2.8E-07 64.9 48.9 27 278-304 100-126 (560)
91 KOG0994 Extracellular matrix g 98.3 0.015 3.3E-07 65.3 55.8 22 415-436 1544-1565(1758)
92 COG5540 RING-finger-containing 98.2 6.4E-07 1.4E-11 84.1 2.7 47 688-734 323-372 (374)
93 PRK04778 septation ring format 98.2 0.019 4.2E-07 64.0 53.7 27 228-254 106-132 (569)
94 KOG1813 Predicted E3 ubiquitin 98.2 3.9E-07 8.5E-12 85.8 1.1 46 689-735 242-287 (313)
95 KOG4265 Predicted E3 ubiquitin 98.2 6.3E-07 1.4E-11 87.5 2.2 47 688-735 290-337 (349)
96 PF11789 zf-Nse: Zinc-finger o 98.2 8.5E-07 1.8E-11 63.5 2.2 42 688-729 11-54 (57)
97 KOG4275 Predicted E3 ubiquitin 98.2 1.4E-07 3E-12 88.0 -2.5 42 689-735 301-343 (350)
98 PF14662 CCDC155: Coiled-coil 98.2 0.0046 1E-07 55.5 27.7 179 486-668 9-187 (193)
99 PF04641 Rtf2: Rtf2 RING-finge 98.2 1E-06 2.3E-11 86.7 3.1 55 686-742 111-169 (260)
100 COG1579 Zn-ribbon protein, pos 98.2 0.00076 1.6E-08 63.8 21.8 14 722-735 220-233 (239)
101 PF09730 BicD: Microtubule-ass 98.1 0.026 5.6E-07 62.6 42.0 65 314-378 98-162 (717)
102 PF06160 EzrA: Septation ring 98.1 0.029 6.4E-07 62.2 52.1 70 520-589 351-420 (560)
103 PF05557 MAD: Mitotic checkpoi 98.1 1.6E-05 3.6E-10 91.0 11.7 36 174-209 172-207 (722)
104 KOG4628 Predicted E3 ubiquitin 98.1 1.5E-06 3.3E-11 86.0 2.8 46 689-734 230-278 (348)
105 KOG2660 Locus-specific chromos 98.1 8.4E-07 1.8E-11 85.4 0.2 54 683-737 10-64 (331)
106 PF09726 Macoilin: Transmembra 98.1 0.011 2.3E-07 66.4 32.1 74 598-671 588-661 (697)
107 KOG1785 Tyrosine kinase negati 98.0 1.3E-06 2.9E-11 85.0 1.2 49 689-737 370-419 (563)
108 KOG0250 DNA repair protein RAD 98.0 0.047 1E-06 62.1 64.0 39 172-210 350-388 (1074)
109 PHA02562 46 endonuclease subun 98.0 0.0068 1.5E-07 68.3 30.8 23 419-441 173-195 (562)
110 KOG0802 E3 ubiquitin ligase [P 98.0 1.6E-06 3.5E-11 95.3 1.3 48 688-736 291-343 (543)
111 PF15070 GOLGA2L5: Putative go 98.0 0.047 1E-06 60.4 41.5 106 507-612 154-259 (617)
112 KOG4159 Predicted E3 ubiquitin 98.0 2.5E-06 5.5E-11 87.1 2.0 49 686-735 82-130 (398)
113 COG5222 Uncharacterized conser 98.0 2.4E-06 5.3E-11 79.9 1.7 43 689-731 275-318 (427)
114 PRK11637 AmiB activator; Provi 97.9 0.026 5.7E-07 60.7 31.6 16 418-433 45-60 (428)
115 KOG3039 Uncharacterized conser 97.9 6.4E-06 1.4E-10 75.1 2.9 54 687-741 220-277 (303)
116 PHA02562 46 endonuclease subun 97.9 0.023 5.1E-07 64.0 31.3 27 415-441 176-202 (562)
117 PF09730 BicD: Microtubule-ass 97.8 0.087 1.9E-06 58.6 63.8 29 277-305 154-182 (717)
118 KOG0825 PHD Zn-finger protein 97.8 3.8E-06 8.2E-11 89.0 -0.7 50 690-740 125-177 (1134)
119 COG5220 TFB3 Cdk activating ki 97.8 4.8E-06 1E-10 75.4 -0.2 50 689-738 11-68 (314)
120 KOG1571 Predicted E3 ubiquitin 97.8 5.7E-06 1.2E-10 81.0 0.1 44 688-735 305-348 (355)
121 PF12861 zf-Apc11: Anaphase-pr 97.8 2.1E-05 4.5E-10 60.3 3.0 47 689-735 22-83 (85)
122 KOG1002 Nucleotide excision re 97.7 9.3E-06 2E-10 82.2 1.0 52 686-737 534-589 (791)
123 COG4372 Uncharacterized protei 97.7 0.062 1.3E-06 53.3 32.9 167 489-655 113-282 (499)
124 PF05622 HOOK: HOOK protein; 97.7 7.5E-06 1.6E-10 93.5 0.0 28 184-211 197-224 (713)
125 KOG0804 Cytoplasmic Zn-finger 97.7 1.4E-05 3.1E-10 79.8 1.4 47 685-734 172-222 (493)
126 KOG0826 Predicted E3 ubiquitin 97.7 8.9E-06 1.9E-10 77.9 -0.2 54 688-742 300-354 (357)
127 PF05622 HOOK: HOOK protein; 97.7 1.1E-05 2.3E-10 92.3 0.0 15 71-85 65-79 (713)
128 KOG0297 TNF receptor-associate 97.6 2.4E-05 5.2E-10 81.7 2.2 54 685-739 18-72 (391)
129 PF05667 DUF812: Protein of un 97.6 0.19 4.1E-06 55.5 35.8 44 525-568 489-532 (594)
130 PF09726 Macoilin: Transmembra 97.6 0.19 4.1E-06 56.7 32.1 61 610-670 586-653 (697)
131 PF14662 CCDC155: Coiled-coil 97.6 0.058 1.2E-06 48.7 28.0 40 498-537 66-105 (193)
132 COG1340 Uncharacterized archae 97.6 0.097 2.1E-06 51.1 32.0 83 576-658 165-247 (294)
133 KOG2817 Predicted E3 ubiquitin 97.5 4.5E-05 9.7E-10 75.8 2.7 60 684-743 330-394 (394)
134 PF05483 SCP-1: Synaptonemal c 97.5 0.19 4.1E-06 54.1 75.9 20 632-651 700-719 (786)
135 KOG1003 Actin filament-coating 97.5 0.064 1.4E-06 48.2 27.6 95 550-644 90-184 (205)
136 KOG0828 Predicted E3 ubiquitin 97.5 4.9E-05 1.1E-09 76.6 1.7 49 686-734 569-634 (636)
137 COG1340 Uncharacterized archae 97.4 0.14 2.9E-06 50.1 36.1 77 563-639 166-242 (294)
138 KOG1039 Predicted E3 ubiquitin 97.4 7.2E-05 1.6E-09 74.9 2.5 48 688-735 161-222 (344)
139 PF05667 DUF812: Protein of un 97.4 0.36 7.9E-06 53.3 35.2 92 459-553 389-480 (594)
140 KOG4692 Predicted E3 ubiquitin 97.3 7.9E-05 1.7E-09 71.8 1.6 45 689-734 423-467 (489)
141 PF14570 zf-RING_4: RING/Ubox 97.3 0.00012 2.7E-09 49.4 2.0 43 691-733 1-47 (48)
142 PF15070 GOLGA2L5: Putative go 97.3 0.41 8.9E-06 53.1 45.0 40 173-212 29-68 (617)
143 PF05290 Baculo_IE-1: Baculovi 97.2 0.0017 3.6E-08 53.9 7.6 50 688-737 80-135 (140)
144 KOG4673 Transcription factor T 97.2 0.47 1E-05 51.0 59.2 22 348-369 609-630 (961)
145 KOG1001 Helicase-like transcri 97.1 0.00011 2.4E-09 81.4 -0.8 48 689-737 455-503 (674)
146 PRK09039 hypothetical protein; 97.0 0.27 5.9E-06 50.7 23.8 11 702-712 264-274 (343)
147 COG5194 APC11 Component of SCF 97.0 0.00039 8.5E-09 51.4 2.2 33 704-737 52-84 (88)
148 KOG1814 Predicted E3 ubiquitin 97.0 0.00045 9.7E-09 68.8 3.1 47 686-732 182-238 (445)
149 PF09789 DUF2353: Uncharacteri 97.0 0.46 9.9E-06 47.5 24.8 112 514-627 66-177 (319)
150 KOG0946 ER-Golgi vesicle-tethe 97.0 0.82 1.8E-05 50.4 30.2 22 368-389 688-709 (970)
151 KOG4673 Transcription factor T 97.0 0.74 1.6E-05 49.6 62.4 48 467-514 707-754 (961)
152 PRK09039 hypothetical protein; 97.0 0.38 8.3E-06 49.6 24.0 26 462-487 44-69 (343)
153 KOG0946 ER-Golgi vesicle-tethe 97.0 0.9 1.9E-05 50.2 31.7 28 639-666 911-938 (970)
154 KOG3800 Predicted E3 ubiquitin 96.9 0.00037 8.1E-09 66.1 1.7 35 705-739 22-56 (300)
155 COG5175 MOT2 Transcriptional r 96.9 0.00035 7.5E-09 67.1 1.2 52 690-741 16-71 (480)
156 KOG1003 Actin filament-coating 96.9 0.32 6.9E-06 43.9 27.7 37 599-635 160-196 (205)
157 KOG0612 Rho-associated, coiled 96.9 1.4 3.1E-05 51.1 44.5 6 690-695 878-883 (1317)
158 COG4942 Membrane-bound metallo 96.9 0.73 1.6E-05 47.7 32.4 11 423-433 41-51 (420)
159 KOG1029 Endocytic adaptor prot 96.8 1.1 2.3E-05 49.2 34.5 6 552-557 490-495 (1118)
160 PF08647 BRE1: BRE1 E3 ubiquit 96.8 0.054 1.2E-06 44.0 13.1 89 498-586 2-90 (96)
161 PF14915 CCDC144C: CCDC144C pr 96.8 0.56 1.2E-05 45.6 39.5 35 522-556 139-173 (305)
162 COG4372 Uncharacterized protei 96.8 0.71 1.5E-05 46.2 32.3 98 457-554 95-192 (499)
163 KOG1734 Predicted RING-contain 96.8 0.00033 7.2E-09 65.2 -0.1 52 689-740 225-287 (328)
164 PF15619 Lebercilin: Ciliary p 96.6 0.65 1.4E-05 43.3 25.8 13 464-476 19-31 (194)
165 KOG4593 Mitotic checkpoint pro 96.6 1.6 3.5E-05 47.6 57.1 25 228-252 152-176 (716)
166 KOG2034 Vacuolar sorting prote 96.6 0.0036 7.8E-08 69.0 5.9 34 687-720 816-851 (911)
167 KOG1493 Anaphase-promoting com 96.5 0.00075 1.6E-08 49.5 0.5 46 690-735 22-82 (84)
168 KOG3161 Predicted E3 ubiquitin 96.5 0.00077 1.7E-08 70.6 0.3 38 687-727 10-51 (861)
169 PF10473 CENP-F_leu_zip: Leuci 96.5 0.53 1.1E-05 40.9 21.1 75 542-616 25-99 (140)
170 KOG3002 Zn finger protein [Gen 96.4 0.0016 3.4E-08 64.6 2.2 43 687-734 47-91 (299)
171 KOG2114 Vacuolar assembly/sort 96.4 0.0051 1.1E-07 67.2 6.2 81 634-732 800-881 (933)
172 KOG0995 Centromere-associated 96.4 1.7 3.7E-05 46.4 42.7 25 312-336 293-317 (581)
173 COG5236 Uncharacterized conser 96.4 0.0013 2.8E-08 63.5 1.4 45 689-733 62-107 (493)
174 KOG3113 Uncharacterized conser 96.4 0.0021 4.6E-08 59.4 2.5 53 686-741 109-165 (293)
175 KOG4185 Predicted E3 ubiquitin 96.4 0.0013 2.9E-08 66.9 1.4 36 698-733 19-54 (296)
176 PF10367 Vps39_2: Vacuolar sor 96.3 0.014 2.9E-07 49.4 7.2 30 688-717 78-109 (109)
177 KOG1100 Predicted E3 ubiquitin 96.3 0.002 4.2E-08 60.5 2.1 42 689-735 159-201 (207)
178 PF13514 AAA_27: AAA domain 96.3 4.2 9E-05 49.9 68.0 29 277-305 358-386 (1111)
179 PF10146 zf-C4H2: Zinc finger- 96.3 0.48 1E-05 45.4 18.0 27 710-737 196-222 (230)
180 KOG1029 Endocytic adaptor prot 96.3 2.3 5.1E-05 46.7 36.4 74 464-537 437-510 (1118)
181 KOG0980 Actin-binding protein 96.3 2.6 5.7E-05 47.2 33.3 72 523-594 413-484 (980)
182 KOG4593 Mitotic checkpoint pro 96.3 2.3 5E-05 46.5 63.1 33 67-99 56-88 (716)
183 KOG0963 Transcription factor/C 96.2 2.5 5.3E-05 45.7 44.2 39 566-605 314-352 (629)
184 KOG3970 Predicted E3 ubiquitin 96.1 0.0061 1.3E-07 55.2 3.8 56 678-733 37-104 (299)
185 PF04849 HAP1_N: HAP1 N-termin 96.1 1.7 3.7E-05 43.1 29.2 101 453-556 163-263 (306)
186 COG4477 EzrA Negative regulato 96.1 2.5 5.4E-05 44.7 43.7 92 483-574 314-408 (570)
187 COG5109 Uncharacterized conser 96.0 0.0033 7.1E-08 60.1 2.0 58 686-743 334-396 (396)
188 KOG4362 Transcriptional regula 96.0 0.0019 4E-08 69.9 0.3 55 680-734 13-69 (684)
189 PF09728 Taxilin: Myosin-like 96.0 2.1 4.5E-05 43.5 41.7 14 651-664 284-297 (309)
190 PF02891 zf-MIZ: MIZ/SP-RING z 95.9 0.0055 1.2E-07 42.7 2.3 44 689-732 3-50 (50)
191 KOG0963 Transcription factor/C 95.9 3.1 6.8E-05 44.9 38.3 81 225-305 187-268 (629)
192 smart00744 RINGv The RING-vari 95.9 0.0063 1.4E-07 42.3 2.4 41 690-730 1-49 (49)
193 PF05010 TACC: Transforming ac 95.9 1.6 3.4E-05 41.0 30.8 36 457-492 16-51 (207)
194 KOG0993 Rab5 GTPase effector R 95.8 2.5 5.5E-05 42.7 35.3 33 689-721 469-507 (542)
195 PF07111 HCR: Alpha helical co 95.7 4.2 9.1E-05 44.6 70.8 26 277-302 240-265 (739)
196 COG0419 SbcC ATPase involved i 95.7 6.8 0.00015 46.9 74.5 26 72-97 170-195 (908)
197 PF03854 zf-P11: P-11 zinc fin 95.6 0.0046 9.9E-08 40.9 0.8 43 689-734 3-46 (50)
198 KOG0999 Microtubule-associated 95.6 3.6 7.9E-05 43.4 49.0 51 315-365 172-222 (772)
199 KOG1941 Acetylcholine receptor 95.5 0.0046 9.9E-08 61.0 0.5 44 689-732 366-414 (518)
200 KOG0980 Actin-binding protein 95.4 5.9 0.00013 44.6 34.0 34 509-542 413-446 (980)
201 COG3883 Uncharacterized protei 95.4 2.8 6E-05 40.7 26.1 19 486-504 74-92 (265)
202 TIGR03185 DNA_S_dndD DNA sulfu 95.4 6.6 0.00014 44.9 39.5 25 281-305 264-288 (650)
203 PF10272 Tmpp129: Putative tra 95.4 0.0084 1.8E-07 60.7 2.1 52 689-740 272-357 (358)
204 KOG4445 Uncharacterized conser 95.4 0.017 3.6E-07 55.1 3.9 48 688-735 115-187 (368)
205 KOG0995 Centromere-associated 95.4 4.9 0.00011 43.1 49.7 29 284-312 233-261 (581)
206 KOG3039 Uncharacterized conser 95.2 0.01 2.2E-07 54.8 1.7 36 684-719 39-74 (303)
207 KOG2930 SCF ubiquitin ligase, 95.1 0.013 2.8E-07 46.1 2.0 29 705-734 80-108 (114)
208 COG5219 Uncharacterized conser 95.1 0.0072 1.6E-07 66.5 0.5 47 688-734 1469-1523(1525)
209 PRK11281 hypothetical protein; 95.0 11 0.00024 45.3 34.5 18 417-434 84-101 (1113)
210 PF13514 AAA_27: AAA domain 95.0 13 0.00028 45.7 72.4 33 67-99 243-275 (1111)
211 KOG4185 Predicted E3 ubiquitin 94.9 0.051 1.1E-06 55.4 6.2 44 689-732 208-265 (296)
212 PF06906 DUF1272: Protein of u 94.8 0.033 7.2E-07 38.5 3.1 47 689-738 6-56 (57)
213 PF09789 DUF2353: Uncharacteri 94.8 5 0.00011 40.3 30.3 45 619-663 273-317 (319)
214 PF11793 FANCL_C: FANCL C-term 94.8 0.0076 1.7E-07 45.6 -0.1 46 689-734 3-66 (70)
215 PF07191 zinc-ribbons_6: zinc- 94.7 0.004 8.7E-08 45.8 -1.7 39 689-733 2-40 (70)
216 KOG0999 Microtubule-associated 94.7 6.9 0.00015 41.4 64.1 28 278-305 228-255 (772)
217 KOG0298 DEAD box-containing he 94.6 0.0093 2E-07 68.4 -0.1 53 680-733 1145-1198(1394)
218 PF12325 TMF_TATA_bd: TATA ele 94.6 2.5 5.4E-05 35.8 15.1 88 455-542 21-111 (120)
219 PHA03096 p28-like protein; Pro 94.4 0.017 3.7E-07 56.9 1.3 44 689-732 179-232 (284)
220 KOG3579 Predicted E3 ubiquitin 94.4 0.02 4.3E-07 54.1 1.6 34 688-721 268-305 (352)
221 PF13851 GAS: Growth-arrest sp 94.2 5 0.00011 37.9 22.9 39 520-558 93-131 (201)
222 KOG1645 RING-finger-containing 94.2 0.012 2.6E-07 58.8 -0.3 42 701-742 22-64 (463)
223 PF10481 CENP-F_N: Cenp-F N-te 94.2 5.6 0.00012 38.1 18.8 27 633-659 163-189 (307)
224 KOG2932 E3 ubiquitin ligase in 94.1 0.019 4.1E-07 55.0 0.9 42 689-733 91-133 (389)
225 PF05911 DUF869: Plant protein 94.1 14 0.00029 42.5 63.2 21 283-303 187-207 (769)
226 KOG0827 Predicted E3 ubiquitin 94.1 0.021 4.5E-07 56.6 1.0 37 703-739 23-61 (465)
227 COG3813 Uncharacterized protei 94.0 0.055 1.2E-06 39.3 2.8 49 689-740 6-58 (84)
228 KOG0018 Structural maintenance 94.0 15 0.00033 42.6 64.9 78 479-556 677-754 (1141)
229 PF14915 CCDC144C: CCDC144C pr 94.0 6.8 0.00015 38.4 42.0 89 508-596 139-227 (305)
230 PF09728 Taxilin: Myosin-like 93.7 9 0.00019 38.9 42.4 59 595-653 242-300 (309)
231 PF10481 CENP-F_N: Cenp-F N-te 93.7 4.5 9.8E-05 38.7 15.3 37 500-536 54-90 (307)
232 PF07111 HCR: Alpha helical co 93.7 14 0.0003 40.9 62.1 22 415-436 473-494 (739)
233 PF08317 Spc7: Spc7 kinetochor 93.6 10 0.00022 39.1 29.7 15 673-687 276-290 (325)
234 TIGR01562 FdhE formate dehydro 93.5 0.025 5.4E-07 56.3 0.4 43 689-732 185-233 (305)
235 PF04216 FdhE: Protein involve 93.4 0.02 4.4E-07 57.8 -0.3 43 689-732 173-220 (290)
236 PF05883 Baculo_RING: Baculovi 93.3 0.033 7.2E-07 47.1 0.9 33 688-720 26-67 (134)
237 PF02318 FYVE_2: FYVE-type zin 93.3 0.039 8.5E-07 47.0 1.3 44 688-731 54-102 (118)
238 COG5185 HEC1 Protein involved 93.3 12 0.00026 39.0 36.1 61 381-441 297-358 (622)
239 KOG1812 Predicted E3 ubiquitin 93.1 0.038 8.1E-07 57.7 1.2 50 688-737 146-206 (384)
240 COG0419 SbcC ATPase involved i 93.1 25 0.00053 42.2 77.5 8 703-710 815-822 (908)
241 PF04710 Pellino: Pellino; In 93.1 0.026 5.7E-07 56.6 0.0 49 688-736 328-403 (416)
242 PF08614 ATG16: Autophagy prot 93.0 1.3 2.7E-05 41.8 11.2 9 469-477 79-87 (194)
243 PF01363 FYVE: FYVE zinc finge 92.7 0.011 2.4E-07 45.0 -2.7 33 688-720 9-45 (69)
244 KOG1815 Predicted E3 ubiquitin 92.7 0.064 1.4E-06 57.7 2.2 53 687-739 69-131 (444)
245 COG3883 Uncharacterized protei 92.6 11 0.00023 36.8 28.8 26 469-494 50-75 (265)
246 TIGR01005 eps_transp_fam exopo 92.6 24 0.00051 41.4 23.5 27 459-485 196-222 (754)
247 TIGR03007 pepcterm_ChnLen poly 92.6 19 0.00042 39.8 23.2 13 383-395 165-177 (498)
248 TIGR03185 DNA_S_dndD DNA sulfu 92.5 24 0.00051 40.5 40.5 21 416-436 265-285 (650)
249 cd00065 FYVE FYVE domain; Zinc 92.4 0.038 8.2E-07 40.1 0.0 33 689-721 3-39 (57)
250 PRK03564 formate dehydrogenase 92.3 0.057 1.2E-06 53.8 1.0 44 688-732 187-235 (309)
251 PF07975 C1_4: TFIIH C1-like d 92.2 0.13 2.8E-06 35.6 2.5 39 691-730 2-50 (51)
252 PF09986 DUF2225: Uncharacteri 92.2 0.046 9.9E-07 52.1 0.3 54 687-741 4-66 (214)
253 COG4647 AcxC Acetone carboxyla 92.1 0.067 1.4E-06 43.9 1.1 22 692-713 61-82 (165)
254 PF06008 Laminin_I: Laminin Do 92.1 14 0.0003 36.8 32.0 10 603-612 191-200 (264)
255 KOG0825 PHD Zn-finger protein 92.0 0.053 1.2E-06 58.7 0.6 46 689-734 97-154 (1134)
256 PRK10929 putative mechanosensi 92.0 34 0.00075 41.2 34.2 7 384-390 70-76 (1109)
257 PRK10929 putative mechanosensi 92.0 34 0.00075 41.2 42.8 53 508-560 260-312 (1109)
258 PF09755 DUF2046: Uncharacteri 91.9 15 0.00032 36.7 34.6 19 418-436 227-245 (310)
259 KOG3899 Uncharacterized conser 91.7 0.059 1.3E-06 51.2 0.5 36 706-741 325-372 (381)
260 TIGR01843 type_I_hlyD type I s 91.7 22 0.00047 38.3 24.6 24 633-656 247-270 (423)
261 PF13240 zinc_ribbon_2: zinc-r 91.7 0.043 9.4E-07 31.0 -0.2 23 710-733 1-23 (23)
262 PF13248 zf-ribbon_3: zinc-rib 91.7 0.054 1.2E-06 31.8 0.1 24 709-733 3-26 (26)
263 smart00787 Spc7 Spc7 kinetocho 91.7 17 0.00036 37.0 29.7 13 674-686 272-284 (312)
264 PF14569 zf-UDP: Zinc-binding 91.6 0.13 2.8E-06 38.5 2.0 47 689-735 10-63 (80)
265 PRK11281 hypothetical protein; 91.5 39 0.00084 40.9 41.3 51 510-560 282-332 (1113)
266 TIGR01843 type_I_hlyD type I s 91.5 23 0.00049 38.2 25.1 19 463-481 80-98 (423)
267 PF04111 APG6: Autophagy prote 91.5 4.6 9.9E-05 41.2 13.7 8 726-733 268-275 (314)
268 PF08317 Spc7: Spc7 kinetochor 91.5 19 0.00041 37.1 31.5 17 653-669 276-292 (325)
269 KOG4360 Uncharacterized coiled 91.4 22 0.00047 37.6 18.6 84 475-558 216-299 (596)
270 PF15066 CAGE1: Cancer-associa 91.4 20 0.00044 37.3 29.7 12 31-42 51-62 (527)
271 KOG1428 Inhibitor of type V ad 91.3 0.1 2.2E-06 60.3 1.7 46 689-734 3487-3544(3738)
272 KOG0827 Predicted E3 ubiquitin 91.2 0.91 2E-05 45.5 8.0 45 690-735 198-246 (465)
273 PF06005 DUF904: Protein of un 91.2 5.4 0.00012 30.3 10.9 47 495-541 14-60 (72)
274 PF15254 CCDC14: Coiled-coil d 90.8 32 0.00069 38.6 21.9 37 498-534 440-476 (861)
275 PF05010 TACC: Transforming ac 90.6 15 0.00033 34.6 30.5 61 526-586 68-128 (207)
276 PF06008 Laminin_I: Laminin Do 90.4 20 0.00044 35.6 31.1 54 603-656 184-237 (264)
277 PF10571 UPF0547: Uncharacteri 90.4 0.13 2.8E-06 30.1 0.8 12 723-734 14-25 (26)
278 PF07800 DUF1644: Protein of u 90.4 0.28 6E-06 42.8 3.2 18 689-706 3-20 (162)
279 PF10235 Cript: Microtubule-as 90.2 0.15 3.1E-06 40.1 1.3 35 689-733 45-79 (90)
280 PF10498 IFT57: Intra-flagella 90.2 26 0.00055 36.4 17.9 33 530-562 216-248 (359)
281 KOG3842 Adaptor protein Pellin 90.1 0.21 4.5E-06 48.2 2.5 35 702-736 374-416 (429)
282 PF05384 DegS: Sensor protein 89.8 14 0.00031 33.1 22.7 48 550-597 86-133 (159)
283 TIGR01005 eps_transp_fam exopo 89.8 47 0.001 39.0 23.5 13 457-469 208-220 (754)
284 KOG3799 Rab3 effector RIM1 and 89.7 1.1 2.4E-05 37.4 6.0 22 688-714 65-87 (169)
285 PF10498 IFT57: Intra-flagella 89.3 30 0.00065 35.9 19.1 11 468-478 217-227 (359)
286 KOG1940 Zn-finger protein [Gen 89.2 0.2 4.4E-06 48.7 1.7 42 689-731 159-204 (276)
287 PF06818 Fez1: Fez1; InterPro 89.1 19 0.00042 33.5 20.1 50 478-527 10-59 (202)
288 smart00064 FYVE Protein presen 88.8 0.1 2.2E-06 39.4 -0.5 33 688-720 10-46 (68)
289 PF00769 ERM: Ezrin/radixin/mo 88.8 25 0.00054 34.5 18.2 21 648-668 184-204 (246)
290 TIGR03007 pepcterm_ChnLen poly 88.7 43 0.00093 37.0 25.3 25 459-483 163-187 (498)
291 PF00769 ERM: Ezrin/radixin/mo 88.5 26 0.00056 34.3 18.0 41 455-495 10-50 (246)
292 PF08746 zf-RING-like: RING-li 88.5 0.53 1.1E-05 31.6 2.8 39 691-729 1-43 (43)
293 KOG2068 MOT2 transcription fac 88.5 0.36 7.8E-06 47.7 2.8 47 689-736 250-300 (327)
294 PF09755 DUF2046: Uncharacteri 88.2 29 0.00064 34.6 33.6 17 615-631 182-198 (310)
295 PF05605 zf-Di19: Drought indu 88.1 0.24 5.2E-06 35.3 1.1 41 688-735 2-43 (54)
296 KOG1729 FYVE finger containing 88.1 0.091 2E-06 51.8 -1.5 46 688-733 168-224 (288)
297 PF12660 zf-TFIIIC: Putative z 88.0 0.073 1.6E-06 43.5 -1.9 46 689-734 15-66 (99)
298 COG4026 Uncharacterized protei 88.0 8.4 0.00018 35.6 10.9 74 595-668 133-206 (290)
299 PF08882 Acetone_carb_G: Aceto 87.9 0.15 3.3E-06 41.3 -0.1 17 724-740 75-91 (112)
300 PF04582 Reo_sigmaC: Reovirus 87.2 1.4 3E-05 44.0 6.1 35 545-579 116-150 (326)
301 COG4026 Uncharacterized protei 87.1 8.8 0.00019 35.5 10.5 28 485-512 142-169 (290)
302 PRK04023 DNA polymerase II lar 86.9 0.31 6.7E-06 55.4 1.6 47 688-737 626-677 (1121)
303 TIGR00634 recN DNA repair prot 86.9 58 0.0013 36.6 28.1 17 459-475 177-193 (563)
304 PRK10884 SH3 domain-containing 86.6 17 0.00036 34.4 12.6 21 457-477 93-113 (206)
305 cd00350 rubredoxin_like Rubred 86.6 0.43 9.3E-06 29.9 1.4 10 723-732 17-26 (33)
306 PF13870 DUF4201: Domain of un 86.6 27 0.00058 32.3 24.3 27 508-534 44-70 (177)
307 PF14353 CpXC: CpXC protein 86.4 0.43 9.3E-06 41.5 1.9 48 689-736 2-51 (128)
308 COG2433 Uncharacterized conser 86.3 20 0.00043 39.0 14.1 36 469-504 427-462 (652)
309 PF15616 TerY-C: TerY-C metal 86.3 0.32 7E-06 41.5 1.0 43 685-734 74-116 (131)
310 KOG0309 Conserved WD40 repeat- 86.2 0.42 9.2E-06 51.9 2.0 44 688-732 1028-1074(1081)
311 smart00787 Spc7 Spc7 kinetocho 86.1 42 0.00091 34.1 29.0 14 647-660 272-285 (312)
312 PRK14714 DNA polymerase II lar 85.7 0.36 7.9E-06 56.3 1.4 49 689-737 668-723 (1337)
313 KOG2462 C2H2-type Zn-finger pr 85.7 0.29 6.4E-06 46.9 0.5 13 688-700 161-173 (279)
314 PF15397 DUF4618: Domain of un 85.7 37 0.00081 33.1 31.5 38 633-670 187-224 (258)
315 COG1655 Uncharacterized protei 85.5 0.13 2.9E-06 47.3 -1.8 56 686-741 17-80 (267)
316 KOG1937 Uncharacterized conser 85.3 51 0.0011 34.4 33.2 26 369-394 356-381 (521)
317 KOG2113 Predicted RNA binding 85.2 0.53 1.2E-05 45.6 2.0 48 683-733 338-386 (394)
318 PHA02862 5L protein; Provision 85.1 0.63 1.4E-05 39.7 2.1 45 689-734 3-53 (156)
319 PF09738 DUF2051: Double stran 85.1 29 0.00064 34.9 14.1 80 531-610 81-160 (302)
320 KOG0804 Cytoplasmic Zn-finger 85.0 53 0.0011 34.4 17.6 43 529-571 356-398 (493)
321 KOG4718 Non-SMC (structural ma 84.9 0.95 2.1E-05 41.4 3.3 67 673-741 164-233 (235)
322 PF15254 CCDC14: Coiled-coil d 84.8 75 0.0016 35.9 25.7 62 597-658 494-555 (861)
323 PF12773 DZR: Double zinc ribb 84.6 0.87 1.9E-05 31.8 2.4 39 691-735 1-41 (50)
324 PF06818 Fez1: Fez1; InterPro 84.4 35 0.00077 31.8 23.2 48 458-505 11-58 (202)
325 PF10083 DUF2321: Uncharacteri 84.2 0.54 1.2E-05 40.9 1.4 29 707-739 27-55 (158)
326 PF09538 FYDLN_acid: Protein o 83.9 0.58 1.2E-05 38.7 1.4 13 724-736 27-39 (108)
327 PF13870 DUF4201: Domain of un 83.6 37 0.00079 31.4 23.8 45 494-538 51-95 (177)
328 KOG2979 Protein involved in DN 83.3 35 0.00077 32.8 12.9 45 688-732 176-222 (262)
329 PF09304 Cortex-I_coil: Cortex 83.1 24 0.00052 28.9 15.4 11 459-469 18-28 (107)
330 KOG1952 Transcription factor N 82.8 0.85 1.8E-05 50.7 2.5 45 687-731 190-244 (950)
331 COG5185 HEC1 Protein involved 82.7 67 0.0015 33.7 39.7 18 419-436 343-360 (622)
332 COG2433 Uncharacterized conser 82.7 41 0.0009 36.7 14.6 34 459-492 431-464 (652)
333 PF15290 Syntaphilin: Golgi-lo 82.6 50 0.0011 32.2 15.3 72 557-628 70-141 (305)
334 KOG3268 Predicted E3 ubiquitin 82.6 0.82 1.8E-05 40.2 1.9 32 704-735 188-229 (234)
335 PF12906 RINGv: RING-variant d 82.4 0.86 1.9E-05 31.3 1.6 39 691-729 1-47 (47)
336 PF09738 DUF2051: Double stran 82.4 59 0.0013 32.8 19.1 21 231-251 280-300 (302)
337 KOG0396 Uncharacterized conser 82.1 0.6 1.3E-05 46.7 1.0 43 701-743 346-388 (389)
338 PF09538 FYDLN_acid: Protein o 81.5 0.72 1.6E-05 38.2 1.1 28 686-713 7-39 (108)
339 PLN02189 cellulose synthase 81.4 1 2.2E-05 52.2 2.6 46 689-734 35-87 (1040)
340 KOG2041 WD40 repeat protein [G 81.4 0.87 1.9E-05 49.4 1.9 25 711-735 1162-1186(1189)
341 PRK00420 hypothetical protein; 81.1 0.65 1.4E-05 38.5 0.7 11 689-699 24-34 (112)
342 KOG2789 Putative Zn-finger pro 81.1 0.67 1.5E-05 46.5 1.0 33 688-720 74-108 (482)
343 KOG1356 Putative transcription 81.0 0.52 1.1E-05 52.3 0.2 48 688-735 229-283 (889)
344 KOG4218 Nuclear hormone recept 80.3 1 2.2E-05 44.3 1.8 30 689-720 16-47 (475)
345 PF07889 DUF1664: Protein of u 80.3 37 0.0008 29.1 13.1 55 612-666 69-123 (126)
346 PRK05978 hypothetical protein; 80.2 1 2.3E-05 39.5 1.7 32 689-736 34-65 (148)
347 KOG1853 LIS1-interacting prote 80.0 56 0.0012 31.1 22.0 24 514-537 53-76 (333)
348 COG4306 Uncharacterized protei 79.9 0.91 2E-05 37.3 1.2 26 708-737 28-53 (160)
349 TIGR01000 bacteriocin_acc bact 79.9 97 0.0021 33.8 23.3 27 636-662 288-314 (457)
350 COG3364 Zn-ribbon containing p 79.8 0.98 2.1E-05 35.8 1.3 25 703-732 5-29 (112)
351 PF14197 Cep57_CLD_2: Centroso 79.7 24 0.00052 26.6 9.8 38 520-557 19-56 (69)
352 KOG0982 Centrosomal protein Nu 79.7 82 0.0018 32.7 25.4 41 520-560 304-344 (502)
353 PLN02436 cellulose synthase A 79.6 1.2 2.7E-05 51.5 2.5 46 689-734 37-89 (1094)
354 KOG3362 Predicted BBOX Zn-fing 79.4 0.59 1.3E-05 39.7 -0.0 32 689-721 119-151 (156)
355 PHA02768 hypothetical protein; 79.4 0.68 1.5E-05 32.7 0.3 38 689-735 6-43 (55)
356 PF12795 MscS_porin: Mechanose 78.5 69 0.0015 31.3 23.8 15 420-434 45-59 (240)
357 PTZ00303 phosphatidylinositol 78.5 1.2 2.5E-05 48.9 1.8 31 689-719 461-500 (1374)
358 PF11932 DUF3450: Protein of u 78.3 72 0.0016 31.4 17.4 53 528-580 43-95 (251)
359 KOG4360 Uncharacterized coiled 78.3 1E+02 0.0022 33.0 21.8 89 454-542 202-297 (596)
360 COG0068 HypF Hydrogenase matur 78.2 1 2.2E-05 49.4 1.3 23 711-733 154-183 (750)
361 COG1198 PriA Primosomal protei 77.9 1.2 2.5E-05 50.4 1.7 44 687-732 434-484 (730)
362 KOG1842 FYVE finger-containing 77.8 2.6 5.6E-05 43.3 3.9 32 688-719 180-215 (505)
363 KOG3842 Adaptor protein Pellin 77.8 2 4.3E-05 41.8 2.9 56 675-731 276-349 (429)
364 PHA02825 LAP/PHD finger-like p 77.5 1.9 4.1E-05 37.9 2.5 47 688-735 8-60 (162)
365 COG1439 Predicted nucleic acid 77.5 0.77 1.7E-05 41.3 0.1 27 707-734 137-164 (177)
366 COG3058 FdhE Uncharacterized p 77.4 1.1 2.5E-05 42.9 1.2 45 687-732 184-234 (308)
367 PF05911 DUF869: Plant protein 77.3 1.5E+02 0.0032 34.4 56.5 47 166-212 127-173 (769)
368 TIGR00622 ssl1 transcription f 77.2 1.5 3.2E-05 36.3 1.7 41 689-730 56-110 (112)
369 KOG2807 RNA polymerase II tran 77.0 0.77 1.7E-05 44.9 -0.0 28 707-734 329-356 (378)
370 KOG1899 LAR transmembrane tyro 76.9 1.2E+02 0.0026 33.2 21.7 38 453-490 107-144 (861)
371 PF04710 Pellino: Pellino; In 76.9 0.97 2.1E-05 45.8 0.6 45 688-732 277-337 (416)
372 PF10186 Atg14: UV radiation r 76.8 89 0.0019 31.7 20.0 12 689-700 174-185 (302)
373 KOG3726 Uncharacterized conser 76.8 1.2 2.6E-05 48.4 1.4 40 689-732 655-698 (717)
374 PLN02195 cellulose synthase A 76.4 2.1 4.7E-05 49.2 3.2 47 688-734 6-59 (977)
375 PF14319 Zn_Tnp_IS91: Transpos 76.4 1.4 3.1E-05 36.9 1.4 7 725-731 62-68 (111)
376 PLN02638 cellulose synthase A 76.3 1.8 3.9E-05 50.3 2.7 46 689-734 18-70 (1079)
377 KOG4739 Uncharacterized protei 76.3 0.84 1.8E-05 43.1 0.0 23 698-720 15-37 (233)
378 PF08172 CASP_C: CASP C termin 75.6 72 0.0016 31.2 12.9 54 529-582 81-134 (248)
379 KOG1899 LAR transmembrane tyro 75.5 1.3E+02 0.0029 33.0 21.6 10 726-735 390-399 (861)
380 PF03833 PolC_DP2: DNA polymer 75.5 0.9 2E-05 50.9 0.0 46 688-736 655-705 (900)
381 PF06156 DUF972: Protein of un 75.2 47 0.001 27.6 10.2 44 622-665 12-55 (107)
382 PF09297 zf-NADH-PPase: NADH p 74.7 0.68 1.5E-05 28.8 -0.7 25 708-732 3-30 (32)
383 PF14205 Cys_rich_KTR: Cystein 74.5 1.3 2.7E-05 30.9 0.5 12 687-698 3-14 (55)
384 KOG1812 Predicted E3 ubiquitin 74.3 1.8 4E-05 45.4 1.9 36 686-721 304-344 (384)
385 PF09889 DUF2116: Uncharacteri 74.3 1.9 4.1E-05 31.1 1.4 15 722-736 2-16 (59)
386 KOG4787 Uncharacterized conser 74.1 1.4E+02 0.003 32.5 25.0 8 711-718 624-631 (852)
387 PF08647 BRE1: BRE1 E3 ubiquit 74.1 46 0.001 27.0 13.3 60 458-517 4-63 (96)
388 KOG2807 RNA polymerase II tran 74.0 1.6 3.5E-05 42.7 1.3 40 690-730 332-374 (378)
389 smart00290 ZnF_UBP Ubiquitin C 74.0 2 4.2E-05 30.0 1.4 25 690-714 1-25 (50)
390 PF09723 Zn-ribbon_8: Zinc rib 73.6 1.2 2.5E-05 29.8 0.2 25 705-731 10-34 (42)
391 PLN02915 cellulose synthase A 73.5 2.3 5E-05 49.3 2.6 46 689-734 16-68 (1044)
392 COG4477 EzrA Negative regulato 73.2 1.4E+02 0.0031 32.3 54.6 64 69-134 67-130 (570)
393 KOG2169 Zn-finger transcriptio 73.0 2.2 4.7E-05 48.2 2.2 53 686-738 304-360 (636)
394 PRK00398 rpoP DNA-directed RNA 73.0 0.95 2.1E-05 31.0 -0.4 13 724-736 22-34 (46)
395 PF13719 zinc_ribbon_5: zinc-r 72.8 1.5 3.3E-05 28.3 0.6 13 689-701 3-15 (37)
396 PF07106 TBPIP: Tat binding pr 72.3 63 0.0014 29.5 11.3 30 459-488 74-103 (169)
397 TIGR03017 EpsF chain length de 72.1 1.5E+02 0.0033 32.1 23.7 195 461-659 161-369 (444)
398 PF15290 Syntaphilin: Golgi-lo 72.0 1E+02 0.0022 30.1 15.5 12 464-475 68-79 (305)
399 PLN02400 cellulose synthase 71.1 2.5 5.4E-05 49.3 2.1 46 689-734 37-89 (1085)
400 PF10013 DUF2256: Uncharacteri 70.5 2.5 5.4E-05 27.7 1.1 12 723-734 8-19 (42)
401 PF13166 AAA_13: AAA domain 69.8 2.2E+02 0.0048 33.1 27.5 21 620-640 433-453 (712)
402 PF14446 Prok-RING_1: Prokaryo 69.8 4 8.7E-05 28.7 2.1 41 689-734 6-52 (54)
403 PF13717 zinc_ribbon_4: zinc-r 69.7 2 4.3E-05 27.5 0.6 13 689-701 3-15 (36)
404 PRK00564 hypA hydrogenase nick 69.6 1.8 3.9E-05 36.7 0.5 26 707-732 70-97 (117)
405 KOG0979 Structural maintenance 69.5 2.4E+02 0.0051 33.3 60.4 88 169-256 258-347 (1072)
406 COG4357 Zinc finger domain con 69.4 1.6 3.4E-05 34.3 0.1 12 724-735 81-92 (105)
407 PRK14559 putative protein seri 69.1 2.8 6.1E-05 47.0 2.0 25 710-735 29-53 (645)
408 KOG2462 C2H2-type Zn-finger pr 68.7 2.3 4.9E-05 41.0 1.0 14 688-701 187-200 (279)
409 PRK00420 hypothetical protein; 68.6 1.6 3.4E-05 36.3 -0.1 25 711-735 26-52 (112)
410 TIGR02300 FYDLN_acid conserved 68.6 2.3 5E-05 35.7 0.9 13 688-700 9-21 (129)
411 PF04912 Dynamitin: Dynamitin 68.4 1.7E+02 0.0036 31.1 19.8 18 420-437 209-226 (388)
412 PF08772 NOB1_Zn_bind: Nin one 68.4 1.4 3.1E-05 33.3 -0.3 22 711-732 12-33 (73)
413 COG4068 Uncharacterized protei 68.3 3.4 7.3E-05 29.1 1.5 16 722-737 7-22 (64)
414 PF15397 DUF4618: Domain of un 68.2 1.2E+02 0.0027 29.6 30.5 23 602-624 198-220 (258)
415 TIGR01000 bacteriocin_acc bact 67.7 1.9E+02 0.0041 31.5 24.9 30 629-658 288-317 (457)
416 COG4338 Uncharacterized protei 67.6 1.5 3.3E-05 29.2 -0.3 12 723-734 12-23 (54)
417 COG1645 Uncharacterized Zn-fin 67.6 2 4.3E-05 36.5 0.3 23 689-715 29-51 (131)
418 COG1592 Rubrerythrin [Energy p 67.2 2.1 4.6E-05 38.4 0.4 10 723-732 149-158 (166)
419 PF10164 DUF2367: Uncharacteri 66.8 1.6 3.4E-05 34.6 -0.4 37 690-733 51-98 (98)
420 PF10205 KLRAQ: Predicted coil 66.8 70 0.0015 26.1 10.7 70 417-495 2-71 (102)
421 PF06785 UPF0242: Uncharacteri 66.4 1.5E+02 0.0032 29.8 19.8 57 508-564 101-157 (401)
422 PF07503 zf-HYPF: HypF finger; 65.9 5.7 0.00012 25.2 2.1 25 710-734 1-32 (35)
423 PF14073 Cep57_CLD: Centrosome 65.5 1.1E+02 0.0024 27.9 22.7 26 453-478 7-32 (178)
424 KOG2113 Predicted RNA binding 65.5 2 4.3E-05 41.8 -0.1 49 686-734 134-183 (394)
425 PRK12496 hypothetical protein; 65.4 2.3 5E-05 38.5 0.4 27 711-737 130-157 (164)
426 KOG3475 60S ribosomal protein 64.8 2.6 5.7E-05 32.0 0.5 28 707-734 15-42 (92)
427 PRK10869 recombination and rep 64.7 2.4E+02 0.0052 31.6 28.9 32 451-482 165-196 (553)
428 smart00647 IBR In Between Ring 64.3 3.9 8.4E-05 30.2 1.3 34 686-719 16-59 (64)
429 KOG2066 Vacuolar assembly/sort 64.2 14 0.00031 41.2 6.0 40 690-731 786-832 (846)
430 TIGR00595 priA primosomal prot 64.1 3 6.4E-05 45.9 0.9 42 689-732 214-262 (505)
431 COG1675 TFA1 Transcription ini 63.9 9.9 0.00021 34.6 4.0 15 724-738 133-147 (176)
432 KOG3576 Ovo and related transc 63.5 1.3 2.9E-05 40.1 -1.5 15 687-701 116-130 (267)
433 TIGR02098 MJ0042_CXXC MJ0042 f 63.2 3.2 6.9E-05 26.9 0.6 13 689-701 3-15 (38)
434 PLN02939 transferase, transfer 63.2 3.2E+02 0.007 32.6 26.4 257 88-359 129-398 (977)
435 cd00729 rubredoxin_SM Rubredox 63.0 5.1 0.00011 25.3 1.5 9 724-732 19-27 (34)
436 PF14369 zf-RING_3: zinc-finge 63.0 2.2 4.8E-05 27.1 -0.2 25 710-734 4-32 (35)
437 TIGR00100 hypA hydrogenase nic 62.7 2.3 5E-05 36.0 -0.2 26 707-732 69-95 (115)
438 KOG1853 LIS1-interacting prote 62.4 1.5E+02 0.0032 28.4 22.6 14 471-484 27-40 (333)
439 COG2816 NPY1 NTP pyrophosphohy 62.4 2.8 6.1E-05 41.0 0.3 28 707-734 110-140 (279)
440 PRK04179 rpl37e 50S ribosomal 62.1 2.9 6.2E-05 30.0 0.2 25 707-731 16-40 (62)
441 TIGR02300 FYDLN_acid conserved 62.0 4 8.8E-05 34.3 1.1 28 709-736 10-39 (129)
442 KOG0972 Huntingtin interacting 62.0 1.7E+02 0.0036 28.8 16.1 47 640-686 302-348 (384)
443 cd00632 Prefoldin_beta Prefold 61.8 92 0.002 25.8 12.1 19 557-575 8-26 (105)
444 PF10764 Gin: Inhibitor of sig 61.5 5 0.00011 27.4 1.3 31 690-721 1-31 (46)
445 PRK12495 hypothetical protein; 61.5 8.3 0.00018 36.0 3.1 11 689-699 43-53 (226)
446 PRK11032 hypothetical protein; 61.3 1.3E+02 0.0027 27.2 13.4 26 702-732 126-151 (160)
447 PHA00733 hypothetical protein 61.1 4.9 0.00011 34.7 1.6 14 723-736 99-112 (128)
448 PRK12380 hydrogenase nickel in 60.9 2.6 5.7E-05 35.5 -0.1 24 709-732 71-95 (113)
449 PF09787 Golgin_A5: Golgin sub 60.8 2.7E+02 0.0058 30.9 35.9 41 623-663 390-430 (511)
450 KOG1815 Predicted E3 ubiquitin 60.8 5 0.00011 43.4 1.9 20 701-720 179-198 (444)
451 KOG4642 Chaperone-dependent E3 60.7 13 0.00028 35.5 4.3 54 689-742 212-265 (284)
452 KOG4080 Mitochondrial ribosoma 60.5 4.3 9.4E-05 35.6 1.1 32 682-720 87-118 (176)
453 KOG0288 WD40 repeat protein Ti 60.5 2.2E+02 0.0047 29.7 17.2 127 453-579 2-128 (459)
454 KOG4577 Transcription factor L 60.4 2.5 5.4E-05 40.5 -0.4 49 689-740 61-109 (383)
455 PRK04406 hypothetical protein; 60.4 76 0.0017 24.4 8.3 57 470-526 3-59 (75)
456 COG1867 TRM1 N2,N2-dimethylgua 60.2 3.9 8.4E-05 41.7 0.9 35 707-743 238-275 (380)
457 KOG0239 Kinesin (KAR3 subfamil 60.1 3.1E+02 0.0068 31.4 21.9 205 462-666 98-313 (670)
458 COG3677 Transposase and inacti 59.9 11 0.00024 32.5 3.5 55 674-741 16-71 (129)
459 TIGR02449 conserved hypothetic 59.9 69 0.0015 23.8 8.9 62 493-554 1-62 (65)
460 PHA02565 49 recombination endo 59.8 3 6.5E-05 36.5 0.0 43 690-734 22-66 (157)
461 PF15066 CAGE1: Cancer-associa 59.8 2.4E+02 0.0052 29.9 28.2 204 432-641 309-522 (527)
462 PF13913 zf-C2HC_2: zinc-finge 59.7 3.9 8.5E-05 23.7 0.5 9 725-733 4-12 (25)
463 PF04102 SlyX: SlyX; InterPro 59.6 66 0.0014 24.2 7.2 52 475-526 1-52 (69)
464 PF04423 Rad50_zn_hook: Rad50 59.3 7.3 0.00016 27.7 1.9 27 673-699 4-31 (54)
465 PF10458 Val_tRNA-synt_C: Valy 59.3 72 0.0016 23.8 7.9 64 184-247 1-66 (66)
466 smart00249 PHD PHD zinc finger 59.3 3.6 7.8E-05 27.8 0.4 40 690-729 1-47 (47)
467 KOG0230 Phosphatidylinositol-4 59.3 3.1 6.7E-05 49.7 -0.0 52 690-742 7-59 (1598)
468 PRK06266 transcription initiat 59.3 3.3 7.2E-05 38.1 0.2 28 710-737 119-150 (178)
469 PRK01343 zinc-binding protein; 59.2 7.1 0.00015 27.8 1.8 17 722-738 8-24 (57)
470 KOG2991 Splicing regulator [RN 59.1 1.7E+02 0.0037 28.1 23.2 166 490-655 106-308 (330)
471 PF07106 TBPIP: Tat binding pr 58.9 71 0.0015 29.2 8.9 66 173-248 72-137 (169)
472 KOG0269 WD40 repeat-containing 58.8 8.4 0.00018 42.7 3.1 52 691-743 782-837 (839)
473 KOG3623 Homeobox transcription 58.7 8.9 0.00019 42.2 3.2 75 653-743 221-329 (1007)
474 PF07754 DUF1610: Domain of un 58.6 3.2 6.8E-05 23.7 -0.0 21 711-731 1-24 (24)
475 COG1885 Uncharacterized protei 58.6 5.3 0.00012 31.9 1.2 14 722-735 48-61 (115)
476 TIGR00373 conserved hypothetic 58.5 2.8 6.1E-05 37.8 -0.4 28 710-737 111-142 (158)
477 KOG2463 Predicted RNA-binding 58.4 2.4 5.1E-05 41.8 -0.9 24 707-730 240-264 (376)
478 COG1773 Rubredoxin [Energy pro 58.4 5 0.00011 28.3 0.9 51 687-741 2-52 (55)
479 PF08273 Prim_Zn_Ribbon: Zinc- 58.3 5.1 0.00011 26.3 0.9 24 691-714 6-32 (40)
480 KOG0288 WD40 repeat protein Ti 58.2 2.4E+02 0.0052 29.4 16.6 128 466-593 1-128 (459)
481 COG3024 Uncharacterized protei 58.1 7.3 0.00016 28.2 1.7 20 723-742 7-26 (65)
482 TIGR02338 gimC_beta prefoldin, 57.8 1.1E+02 0.0024 25.5 12.8 82 584-665 4-107 (110)
483 PF10205 KLRAQ: Predicted coil 57.5 1.1E+02 0.0023 25.1 11.2 70 503-572 2-71 (102)
484 COG2093 DNA-directed RNA polym 57.4 5.2 0.00011 28.8 0.9 25 711-736 7-32 (64)
485 PF06156 DUF972: Protein of un 57.3 84 0.0018 26.1 8.0 56 479-534 2-57 (107)
486 PF04102 SlyX: SlyX; InterPro 57.2 82 0.0018 23.7 7.4 52 454-505 1-52 (69)
487 PF02148 zf-UBP: Zn-finger in 57.1 5.3 0.00011 29.5 0.9 21 691-711 1-22 (63)
488 PF14992 TMCO5: TMCO5 family 57.1 2.1E+02 0.0045 28.4 16.4 159 503-665 8-170 (280)
489 PF05377 FlaC_arch: Flagella a 57.1 64 0.0014 23.0 6.1 42 479-520 1-42 (55)
490 TIGR03830 CxxCG_CxxCG_HTH puta 57.0 3.4 7.4E-05 35.7 -0.1 36 691-733 1-41 (127)
491 smart00132 LIM Zinc-binding do 56.9 7.7 0.00017 24.9 1.6 37 690-735 1-39 (39)
492 PF05766 NinG: Bacteriophage L 56.9 30 0.00066 31.9 5.9 96 639-736 37-136 (189)
493 PF13834 DUF4193: Domain of un 56.8 3.6 7.7E-05 32.9 -0.0 28 687-714 69-98 (99)
494 PRK03681 hypA hydrogenase nick 56.5 3.5 7.5E-05 34.8 -0.1 26 707-732 69-96 (114)
495 KOG0982 Centrosomal protein Nu 56.3 2.6E+02 0.0057 29.3 26.3 214 454-669 219-440 (502)
496 COG4306 Uncharacterized protei 55.9 3.9 8.4E-05 33.8 0.1 33 688-720 39-80 (160)
497 PF10267 Tmemb_cc2: Predicted 55.9 2.7E+02 0.0059 29.4 16.4 104 480-589 214-318 (395)
498 PHA00626 hypothetical protein 55.7 3.3 7.2E-05 28.9 -0.3 31 705-738 5-38 (59)
499 PTZ00073 60S ribosomal protein 55.4 4.4 9.6E-05 31.6 0.3 25 708-732 16-40 (91)
500 PF10497 zf-4CXXC_R1: Zinc-fin 55.0 9.8 0.00021 31.5 2.3 40 690-730 9-68 (105)
No 1
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-41 Score=354.09 Aligned_cols=686 Identities=30% Similarity=0.413 Sum_probs=514.0
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHHhhcchHHHHhccccCcchhhccccchHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 004587 18 MEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQ 97 (743)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~el~ 97 (743)
++..++.++.++.+.++.+...++.+..+.+.+...+.+ .........+.|..+...++..+..+..++..+...+.
T Consensus 3 ~~~~~~~~i~~~~~~~~~~~~~~D~lq~~~e~~~~~~~~---~~e~l~~~~~~L~~e~e~Lq~~~~~~~~~~~~~~~~~~ 79 (698)
T KOG0978|consen 3 VEEPLAGRIKSEKEAVSLVLIQIDDLQTQAEELARRLNR---VEEALTVLFDELAEENEKLQNLADHLQEKHATLSEQIS 79 (698)
T ss_pred chhhhHHHHHhhhhhhcccchhhHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999988877766554433 11223336778888888999999999999999999999
Q ss_pred HHhhhhHHhHHHHHhhHHHHHHHHHHHHHhhHhHHHhhhhhhhhccccccccccCCccc-ccccchhhhhhHhhHHHHHH
Q 004587 98 SRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHV-AGDRVRDEQRDLRDMESVHK 176 (743)
Q Consensus 98 ~~~~~~~~~~~e~~~l~~el~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ 176 (743)
.+.+.+.....+...+...++.+..+++...+....+.........+... ..++++ ..+.+.-.......+...++
T Consensus 80 el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~~t---~~~~~~~~~~~~t~~~t~~~~l~~~ie 156 (698)
T KOG0978|consen 80 ELLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALEHLNT---YGNGNGSLSGTITVNSTELEELRDEIE 156 (698)
T ss_pred HHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---CCCcccccCcccccchhhhhhhccchh
Confidence 99999988889999999999999999988888877775544444333332 112221 11111122345667778888
Q ss_pred HHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhhhhh--hhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 177 ELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV--KCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLA 254 (743)
Q Consensus 177 ~l~~~~~~~~~e~~~l~~e~~~l~~el~~l~~~l~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~e~~~l~ 254 (743)
++......+..+++.++.....+..++..+...+..- ........+..++ ++..+.-.. .+.+
T Consensus 157 e~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~-----~NE~l~~~~-------~~~~--- 221 (698)
T KOG0978|consen 157 ELRELASTRMEELEKLQLYSDEILRQLDRFRVELRSLKEKVRSETFELRCLQ-----YNEELQRKT-------MESD--- 221 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----hhhhccccc-------chhh---
Confidence 8888888888889988888888888888888777431 1100000000000 000000000 0000
Q ss_pred HHHHHhhhhhchHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-chHHHHHHHHHhhccHHHHHHHH
Q 004587 255 WRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPG-RKEIIAEFRALVSSFPEDMSAMQ 333 (743)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~L~~~l~~~~~~~~-~~~~~~e~~~~~~~~~~e~~~l~ 333 (743)
+. + ....+..+...+..+..+.+.+.........+.+ ......+++.++.++......|.
T Consensus 222 -------------e~----~--~~~~~~~lee~~~~~~~e~~~l~~~~e~~~~~~~~~~~in~e~~~L~Ssl~e~~~~l~ 282 (698)
T KOG0978|consen 222 -------------EA----I--NSKKVIKLEEKLAQCVKEYEMLRKEFENNKSQNDLFSSINREMRHLISSLQEHEKLLK 282 (698)
T ss_pred -------------hh----h--ccchHHHHHHHHHHHHHHHHHHHHhHHHhHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 1122455556666666677777666655533333 44455677777777777777777
Q ss_pred HHHHHhHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHhhhhhHHHHHHHHHHHhhcccch
Q 004587 334 RQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQ-AMVQDLTDSNLELKLILDMYRRESTDS 412 (743)
Q Consensus 334 ~~l~~~~~~~~el~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~l~-~~i~~l~~~~~~~~~~~~~~~~~~~~~ 412 (743)
.....++.....+..++.....+...+.........+...+.........+. .-+..+......+....+.......+.
T Consensus 283 ~~~~~~k~t~~~~~~lr~~~~s~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~k~ 362 (698)
T KOG0978|consen 283 EYERELKDTESDNLKLRKQHSSAADSLESKSRDLESLLDKIQDLISQEAELSKKLRSKLLESAKKLKILLREKDRESQKE 362 (698)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhh
Confidence 7777888888888888877777777776655555566666666666665555 333344444444555555444555555
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHhhhhHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHH
Q 004587 413 RDVLAARDLEYK-AWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMR-QKLEAFKR---DMVSLSDAL 487 (743)
Q Consensus 413 ~~~~~l~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~e~~i~~l~-~~l~~~~~---~~~~l~~~l 487 (743)
+++.....+... ++..++.+.........+++++...+...-.+.-+.....+...++ ..++.... ++..+...|
T Consensus 363 ~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~L 442 (698)
T KOG0978|consen 363 RDILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEEL 442 (698)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHH
Confidence 666666666555 6777777777666665555544444444334444444445555555 34445555 344444455
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004587 488 KSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFF 567 (743)
Q Consensus 488 ~~~~~e~~~l~~e~~~l~~~~~el~~~~~~l~~~~~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~el~~l~~~l~~~ 567 (743)
.........+..+++.++.++++++.++..|..++.+.++.+.+++.+...+.+.+..|..++..+...+.++....+.+
T Consensus 443 qk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~ 522 (698)
T KOG0978|consen 443 QKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKL 522 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 568 DMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERFA 647 (743)
Q Consensus 568 ~~~~~~le~~~~~l~~~l~~l~~el~~~~~~l~~~~~~~~e~~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~~l~~~~~~ 647 (743)
...+..++++...+......+..++..+...++.+++...++...+..+...++.....+..++..+.+...+++.+...
T Consensus 523 ~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k 602 (698)
T KOG0978|consen 523 ELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFK 602 (698)
T ss_pred HHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHhhccccccccccccCCceeccCcccccHhhHHHHhccCCCCCc
Q 004587 648 KKRLEEDLEMGRRKVLRLQAQTEGSSIIEELQQELREYREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCP 727 (743)
Q Consensus 648 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~e~~~l~~~~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp 727 (743)
...+++++..+.+++..+............|.+++..|+..+.||+|..+|++.|++.|||+||..|+.+++..|+|+||
T Consensus 603 ~~rleEE~e~L~~kle~~k~~~~~~s~d~~L~EElk~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP 682 (698)
T KOG0978|consen 603 RKRLEEELERLKRKLERLKKEESGASADEVLAEELKEYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCP 682 (698)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999988777667789999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcCcCC
Q 004587 728 GCAASFSPNDVKPVYI 743 (743)
Q Consensus 728 ~c~~~~~~~~~~~~~~ 743 (743)
.|+.+|+++||++|||
T Consensus 683 ~Cn~aFganDv~~I~l 698 (698)
T KOG0978|consen 683 KCNAAFGANDVHRIHL 698 (698)
T ss_pred CCCCCCCcccccccCC
Confidence 9999999999999997
No 2
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.88 E-value=1.5e-15 Score=178.91 Aligned_cols=503 Identities=17% Similarity=0.186 Sum_probs=328.7
Q ss_pred HHHHHHHHHHHHHHHhhcchHHHHhccccCcchhhccccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHhHHHH
Q 004587 31 NIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKL 110 (743)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~el~~~~~~~~~~~~e~ 110 (743)
+-++...+.+.++..++..+..++.+...+...+...+++....+..++..+..+...+.++.++++..+..++++.+..
T Consensus 1048 ~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r 1127 (1930)
T KOG0161|consen 1048 GELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQR 1127 (1930)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466667777777888888888877766777777799999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHhhHhHHHh---hhhhhhhccccccccccCCcccccccc---hhhhhhHhhHHHHHHHHHHHHHH
Q 004587 111 NRLKGELESAVKELEECNCKLAAL---RAERDVTKGAFFPVLNLGNKHVAGDRV---RDEQRDLRDMESVHKELMDQASH 184 (743)
Q Consensus 111 ~~l~~el~~~~~~le~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~l~~~~~~ 184 (743)
.++..++..+..++++..+..... ...++................+..... ......+..+...++.++.....
T Consensus 1128 ~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~ 1207 (1930)
T KOG0161|consen 1128 RDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAK 1207 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998886554433 222222211111111111111111100 11223355667788888888888
Q ss_pred HHHHHHhHhhhHHHHHHHHHHHHHhhhh--hhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004587 185 QLLELKGLHDGRIKVLQQLYNLQNTLKS--VKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNM 262 (743)
Q Consensus 185 ~~~e~~~l~~e~~~l~~el~~l~~~l~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~e~~~l~~~~~~~~~ 262 (743)
+.++...++.+..++..++..+.....+ ......+..+..++..+......+..+-.....+..+...+...+.+.+.
T Consensus 1208 lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~ 1287 (1930)
T KOG0161|consen 1208 LEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEA 1287 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHH
Confidence 8899999999999999888887777776 33344445666677777777777777777788888888888888887777
Q ss_pred hhchHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-chHHHHHHHHHhhccHHHHHHHHHHHHHhHH
Q 004587 263 KIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPG-RKEIIAEFRALVSSFPEDMSAMQRQLSKYKE 341 (743)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~L~~~l~~~~~~~~-~~~~~~e~~~~~~~~~~e~~~l~~~l~~~~~ 341 (743)
.. ..+.+....+..++..+..++..-......+...+..+..+.. ....+++-......+.+.+.....++..|+.
T Consensus 1288 ~~---~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~ 1364 (1930)
T KOG0161|consen 1288 KL---SALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKK 1364 (1930)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 3334444447888888888888877777777776665533211 1112222222233344444555555555555
Q ss_pred HHHHHHH-HHHhHHhHHHH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhHH
Q 004587 342 AALDIHI-LRADVLSLTNV----LERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVL 416 (743)
Q Consensus 342 ~~~el~~-l~~~~~~l~~~----l~~~~~~~~~l~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (743)
....... ...++.+.+.. +......+..+...+..+......|+.++.++..++........
T Consensus 1365 k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~------------- 1431 (1930)
T KOG0161|consen 1365 KFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVA------------- 1431 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------------
Confidence 4333222 12333333333 33333344444455555555555666666666666444332221
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 004587 417 AARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEA 496 (743)
Q Consensus 417 ~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~e~~i~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~ 496 (743)
.+..........+...+.....+.. ..+..+.+.+.+.+++..+...++.+...++.+....+.+..++..
T Consensus 1432 ~le~k~k~f~k~l~e~k~~~e~l~~---------Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~d 1502 (1930)
T KOG0161|consen 1432 ALEKKQKRFEKLLAEWKKKLEKLQA---------ELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIED 1502 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222223333333333332222222 3345566778888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 004587 497 YLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQ 558 (743)
Q Consensus 497 l~~e~~~l~~~~~el~~~~~~l~~~~~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~el~ 558 (743)
+...+...++.+.+++...+.+..++.+++..+.++...+...+...-.+..+...++.++.
T Consensus 1503 l~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~e 1564 (1930)
T KOG0161|consen 1503 LEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIE 1564 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888776666665555556666555554
No 3
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.81 E-value=6.9e-12 Score=148.49 Aligned_cols=108 Identities=14% Similarity=0.212 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHH
Q 004587 454 ISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQS-YDDMQTQNQQLLQQITERDDYNIKL 532 (743)
Q Consensus 454 ~~~~~l~~~e~~i~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~-~~el~~~~~~l~~~~~~~~~~~~~l 532 (743)
.+...+..++.+...++.+++.-......+..++.....+...-...++..... .+++......+...+..++..+..+
T Consensus 1319 ~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~ 1398 (1930)
T KOG0161|consen 1319 ALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAA 1398 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344556666666666777776666666666666666666665544444444433 4555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004587 533 VLEGVRARQLQDALLMDKHMMESEIQQAN 561 (743)
Q Consensus 533 ~~e~~~~~~~~~~l~~e~~~l~~el~~l~ 561 (743)
......++.....+..+...+...+....
T Consensus 1399 ~~~~~~Lek~k~~l~~el~d~~~d~~~~~ 1427 (1930)
T KOG0161|consen 1399 NAKNASLEKAKNRLQQELEDLQLDLERSR 1427 (1930)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55555555555555555555544444443
No 4
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.76 E-value=4.9e-11 Score=144.71 Aligned_cols=442 Identities=10% Similarity=0.052 Sum_probs=221.7
Q ss_pred HHHHHHHHHHHHhhcchHHHHhccccCc-chhhccccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHhHHHHHh
Q 004587 34 SNILAAVDNLWHLKGGLYAAVLKDLQDG-GSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNR 112 (743)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~el~~~~~~~~~~~~e~~~ 112 (743)
..+...+..+..........+......+ .....+.++|...+.+|...+..+..++..+..++..+...+..++.....
T Consensus 265 ~~l~~ql~~l~~~~~~~~~~~~rL~~~i~~~l~~s~eEL~~ll~~f~~~~~e~~~~~~~le~e~~~l~~el~~l~~~~~~ 344 (1311)
T TIGR00606 265 MKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTE 344 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555554444444444442211 334558999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhHhHHHhhhhhhh-hccccccccccCCcccccccchhhhhhHhhHHHHHHHHHHHHHHHHHHHHh
Q 004587 113 LKGELESAVKELEECNCKLAALRAERDV-TKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKG 191 (743)
Q Consensus 113 l~~el~~~~~~le~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~ 191 (743)
+..+++.+.++.+.+...+..+...... ...+....... .+ ..-..+..++..+...+......+..
T Consensus 345 l~~e~gkl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (1311)
T TIGR00606 345 LLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFER-------GP-----FSERQIKNFHTLVIERQEDEAKTAAQ 412 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCC-------cc-----cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888777333332 22222210000 00 00112334444444444444444444
Q ss_pred HhhhHH----HHHHHHHHHHHhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhh
Q 004587 192 LHDGRI----KVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQ---VEKDNLAWRETELNMKI 264 (743)
Q Consensus 192 l~~e~~----~l~~el~~l~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~---~e~~~l~~~~~~~~~~~ 264 (743)
+..++. .....+..+...+... ..........+......+..+...+..+. ..+..+...+..+...+
T Consensus 413 ~~~e~~~~~~~~q~~L~ei~~~l~~~-----eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 487 (1311)
T TIGR00606 413 LCADLQSKERLKQEQADEIRDEKKGL-----GRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAEREL 487 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHHH
Confidence 444333 2222233333322210 00011111122222222222222222111 12222222222222222
Q ss_pred chHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHhhccHHHHHHHHHHH----H---
Q 004587 265 DLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQL----S--- 337 (743)
Q Consensus 265 ~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~~e~~~~~~~~~~e~~~l~~~l----~--- 337 (743)
..... ......+..+|...+..+..++.++..|..++..+...++....+..++..+......+..+.... .
T Consensus 488 ~~~~~-~~~~~~~~~~i~~~~~~~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 566 (1311)
T TIGR00606 488 SKAEK-NSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLL 566 (1311)
T ss_pred HHHHh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22221 112334677788888888888888888888887776666666555555555554444443332211 0
Q ss_pred ------------------HhHH-------HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHH
Q 004587 338 ------------------KYKE-------AALDIHILRADVLSLTNVLERKVKECETLLASS------ADQVAEIHKLQA 386 (743)
Q Consensus 338 ------------------~~~~-------~~~el~~l~~~~~~l~~~l~~~~~~~~~l~~~~------~~~~~~~~~l~~ 386 (743)
.+.. ...++..+...+..+...+.....++..+...+ ..+...+..++.
T Consensus 567 ~~~~~~~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~~~~~~~~~~L~~~~~ 646 (1311)
T TIGR00606 567 GYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKE 646 (1311)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 1111 111222222222222223333333333222222 223334556666
Q ss_pred HHHhhhhhHHHHHHHHHHHhhcccch----------------------hhHHHHHHHHHH-------HHHHHHHHHhhhh
Q 004587 387 MVQDLTDSNLELKLILDMYRRESTDS----------------------RDVLAARDLEYK-------AWAHVHSLKSSLD 437 (743)
Q Consensus 387 ~i~~l~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~l~~~~~~-------~~~~~~~l~~~l~ 437 (743)
.+.....++..+.+...+|....... .-+..+...... +...+...+..++
T Consensus 647 ~l~~~~~~~~~~~~~~~~~~k~ie~a~~~~~~~C~LC~R~f~~eee~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e 726 (1311)
T TIGR00606 647 EIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRD 726 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCChhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH
Confidence 66666666666665555444211111 012223332222 2223333333333
Q ss_pred HhhHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 004587 438 EQSLELRVKTAIEAEAISQ-QRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEA 496 (743)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~-~~l~~~e~~i~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~ 496 (743)
.+.. +.+....+..+. .+++.++..+..+...+..+..++..+...+.....++..
T Consensus 727 ~l~~---l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~ 783 (1311)
T TIGR00606 727 EMLG---LAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEES 783 (1311)
T ss_pred HHHH---hhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3333 444444444443 5677777777777777777777677666666666666543
No 5
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.71 E-value=1.2e-18 Score=198.29 Aligned_cols=489 Identities=17% Similarity=0.181 Sum_probs=0.0
Q ss_pred HhhcchHHHHhccccCcchhhccccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHhHHHHHhhHHHHHHHHHHH
Q 004587 45 HLKGGLYAAVLKDLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKEL 124 (743)
Q Consensus 45 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~el~~~~~~~~~~~~e~~~l~~el~~~~~~l 124 (743)
..+..+...|.+...++......+++....+..+++.+..|+..+.++..+++..+....+.......|..+|..+...+
T Consensus 4 ~~~~~l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~L 83 (859)
T PF01576_consen 4 RQKEELEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERL 83 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677666666677779999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHhHHHh---hhhhhhhccccccccccCCcccccccc---hhhhhhHhhHHHHHHHHHHHHHHHHHHHHhHhhhHHH
Q 004587 125 EECNCKLAAL---RAERDVTKGAFFPVLNLGNKHVAGDRV---RDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIK 198 (743)
Q Consensus 125 e~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~e~~~ 198 (743)
++..+..... ...++.........+......+..... ......+..+..+++.+++.....++....+..++.+
T Consensus 84 ee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~d 163 (859)
T PF01576_consen 84 EEAGGATQAQIELNKKREAELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDD 163 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 8888775543 333443333333333333332221111 1222336677788888888888888999999999999
Q ss_pred HHHHHHHHHHhhhh--hhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHhhhhhc
Q 004587 199 VLQQLYNLQNTLKS--VKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAV 276 (743)
Q Consensus 199 l~~el~~l~~~l~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~ 276 (743)
+...++.+...... .........+..++..+......+.++......++.+++.+...+.+.+..+..+... ...
T Consensus 164 L~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~---k~~ 240 (859)
T PF01576_consen 164 LQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQRE---KSS 240 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 99999888888777 4455556667777778888888888888888888888888888888887777554443 334
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CchHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHH-HHHHHhHH
Q 004587 277 TDSKIADLGIEIQKQIDEKNRIEMRLEEASREP-GRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDI-HILRADVL 354 (743)
Q Consensus 277 ~~~~i~~l~~~l~~~~~~~~~L~~~l~~~~~~~-~~~~~~~e~~~~~~~~~~e~~~l~~~l~~~~~~~~el-~~l~~~~~ 354 (743)
+..++.++...+.........|...+..+.... .....+++-......+...+..+..++..|+.....- ......+.
T Consensus 241 L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelE 320 (859)
T PF01576_consen 241 LESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELE 320 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHH
Confidence 788888888888888888888887776663322 2233333333444555666666666676666644432 22123333
Q ss_pred hHHHH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH
Q 004587 355 SLTNV----LERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVH 430 (743)
Q Consensus 355 ~l~~~----l~~~~~~~~~l~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 430 (743)
+++.. +......+......+..+......|.+++.++..++........ .+...-+.+...+.
T Consensus 321 eaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~-------------~LeKKqr~fDk~l~ 387 (859)
T PF01576_consen 321 EAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAA-------------ELEKKQRKFDKQLA 387 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHhHHHHHH
Confidence 33333 33333344445555555555556666666666666544433221 12222222333333
Q ss_pred HHHhhhhHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004587 431 SLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDD 510 (743)
Q Consensus 431 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~e~~i~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~e 510 (743)
.++..+..+.. ....++.+.+.+.+++..+...++.+...+..+......+..++..+...+...++.+.+
T Consensus 388 e~k~~~~~~~~---------e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~e 458 (859)
T PF01576_consen 388 EWKAKVEELQA---------ERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHE 458 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHH---------HHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHH
Confidence 33332222211 334556677888888888999998888888888888899999998888888888888999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 004587 511 MQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQ 558 (743)
Q Consensus 511 l~~~~~~l~~~~~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~el~ 558 (743)
+......|..++.++...+..+...+....+.+..+..++..++.++.
T Consensus 459 Lek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~e 506 (859)
T PF01576_consen 459 LEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIE 506 (859)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888888888888888888887777777777766666666654
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.69 E-value=4.9e-09 Score=129.06 Aligned_cols=16 Identities=19% Similarity=0.040 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 004587 418 ARDLEYKAWAHVHSLK 433 (743)
Q Consensus 418 l~~~~~~~~~~~~~l~ 433 (743)
+...+..+...+..+.
T Consensus 679 l~~~l~~l~~~l~~l~ 694 (1164)
T TIGR02169 679 LRERLEGLKRELSSLQ 694 (1164)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.68 E-value=3.8e-09 Score=130.44 Aligned_cols=20 Identities=10% Similarity=0.068 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 004587 417 AARDLEYKAWAHVHSLKSSL 436 (743)
Q Consensus 417 ~l~~~~~~~~~~~~~l~~~l 436 (743)
.+...+..+...+..+...+
T Consensus 674 ~l~~e~~~l~~~~~~l~~~l 693 (1179)
T TIGR02168 674 ERRREIEELEEKIEELEEKI 693 (1179)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433
No 8
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.68 E-value=3.4e-09 Score=127.19 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=12.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q 004587 277 TDSKIADLGIEIQKQIDEKNRIEMR 301 (743)
Q Consensus 277 ~~~~i~~l~~~l~~~~~~~~~L~~~ 301 (743)
+...+..+...+..+...++.+...
T Consensus 472 ~~~~~~~~~~~l~~~~~~~~~l~~~ 496 (1163)
T COG1196 472 LQEELQRLEKELSSLEARLDRLEAE 496 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555544443
No 9
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.66 E-value=2.4e-08 Score=116.97 Aligned_cols=112 Identities=14% Similarity=0.142 Sum_probs=52.8
Q ss_pred hhhhhhhcccchHHHHHHHHHHHHHHHHHhhcchHHHHhccccCcchhhccccchHHHHHHHHHHHHHHHHhhHHHHHHH
Q 004587 17 QMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTREL 96 (743)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~el 96 (743)
.|+.++.....-+..-+..+...++.+......+...+.+......-....+..+...+..+...+..|......+..-|
T Consensus 640 qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i 719 (1822)
T KOG4674|consen 640 QLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTI 719 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555555555555444444444432111111111445555555555555555555555555555
Q ss_pred HHHhhhhHHhHHHHHhhHHHHHHHHHHHHHhh
Q 004587 97 QSRQDIDAKDKAKLNRLKGELESAVKELEECN 128 (743)
Q Consensus 97 ~~~~~~~~~~~~e~~~l~~el~~~~~~le~~~ 128 (743)
.........+..++......+..+..++....
T Consensus 720 ~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LK 751 (1822)
T KOG4674|consen 720 SKQEQTVHTLSQELLSANEKLEKLEAELSNLK 751 (1822)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 55555444444444444444444444444333
No 10
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.65 E-value=5.1e-08 Score=117.21 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcch
Q 004587 29 TKNIVSNILAAVDNLWHLKGGL 50 (743)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~ 50 (743)
+.+-|..+...++.+......+
T Consensus 177 a~~~L~~~~~nl~~~~~~~~el 198 (1163)
T COG1196 177 AERKLERTEENLERLEDLLEEL 198 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 11
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.64 E-value=1.1e-08 Score=113.04 Aligned_cols=138 Identities=14% Similarity=0.214 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004587 491 NEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMK 570 (743)
Q Consensus 491 ~~e~~~l~~e~~~l~~~~~el~~~~~~l~~~~~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~el~~l~~~l~~~~~~ 570 (743)
..+++.+..++..+...++.++..+......+..+...+..+.....+....+..+.-.+.....++..+..++......
T Consensus 464 ~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~ 543 (775)
T PF10174_consen 464 QEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRAN 543 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 34445566666666666666666666666666666677777777777777777777777777777777776666553222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 004587 571 AARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYK 629 (743)
Q Consensus 571 ~~~le~~~~~l~~~l~~l~~el~~~~~~l~~~~~~~~e~~~~~~~l~~~l~~l~~~~~~ 629 (743)
..+...+..+...+.....+....+.+++.+...+..+..+.......+..+.+.+.+
T Consensus 544 -~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~LekeLek 601 (775)
T PF10174_consen 544 -AELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKELEK 601 (775)
T ss_pred -HhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 1223334444444444444455555555555555555555555555555555554433
No 12
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.64 E-value=1.4e-08 Score=123.49 Aligned_cols=37 Identities=14% Similarity=0.276 Sum_probs=17.8
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHHH
Q 004587 314 IIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILR 350 (743)
Q Consensus 314 ~~~e~~~~~~~~~~e~~~l~~~l~~~~~~~~el~~l~ 350 (743)
.+..+...+..+......+...+..++.....+..+.
T Consensus 696 f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~ 732 (1311)
T TIGR00606 696 FISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLA 732 (1311)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445555544444555555554544444444443
No 13
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.63 E-value=2e-08 Score=124.07 Aligned_cols=13 Identities=38% Similarity=0.544 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhh
Q 004587 655 LEMGRRKVLRLQA 667 (743)
Q Consensus 655 ~~~l~~~~~~l~~ 667 (743)
+..++..+..+.+
T Consensus 967 ~~~l~~~i~~lg~ 979 (1179)
T TIGR02168 967 EEEARRRLKRLEN 979 (1179)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555554
No 14
>PRK02224 chromosome segregation protein; Provisional
Probab=99.62 E-value=4.2e-08 Score=116.15 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 004587 417 AARDLEYKAWAHVHSLKSSLD 437 (743)
Q Consensus 417 ~l~~~~~~~~~~~~~l~~~l~ 437 (743)
.+......+...+..+...+.
T Consensus 472 ~~~~~~~~~~~~~~~le~~l~ 492 (880)
T PRK02224 472 EDRERVEELEAELEDLEEEVE 492 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 15
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.58 E-value=7e-08 Score=106.95 Aligned_cols=119 Identities=18% Similarity=0.256 Sum_probs=63.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCchHHHHHHHHHhhccHHHHHHHHHHHHH----hHHHHHHHHHHHH
Q 004587 277 TDSKIADLGIEIQKQIDEKNRIEMRLEEAS-REPGRKEIIAEFRALVSSFPEDMSAMQRQLSK----YKEAALDIHILRA 351 (743)
Q Consensus 277 ~~~~i~~l~~~l~~~~~~~~~L~~~l~~~~-~~~~~~~~~~e~~~~~~~~~~e~~~l~~~l~~----~~~~~~el~~l~~ 351 (743)
+..++..+.-+|.....++..+.+++..+. ...+...-++-++..+.........|+.++.. +..+...+.....
T Consensus 285 mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~ 364 (775)
T PF10174_consen 285 MKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQA 364 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777776767777777666552 23333445555555555555555555554422 2223333333444
Q ss_pred hHHhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhH
Q 004587 352 DVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSN 395 (743)
Q Consensus 352 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~i~~l~~~~ 395 (743)
.+..+.........++..+.+.+......+..|+..|+.+...+
T Consensus 365 ~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l 408 (775)
T PF10174_consen 365 QIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQL 408 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555555566666666666666666655554443
No 16
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.58 E-value=1.5e-07 Score=110.43 Aligned_cols=126 Identities=18% Similarity=0.150 Sum_probs=67.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh-----hcCCCchHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHHH--
Q 004587 278 DSKIADLGIEIQKQIDEKNRIEMRLEEA-----SREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILR-- 350 (743)
Q Consensus 278 ~~~i~~l~~~l~~~~~~~~~L~~~l~~~-----~~~~~~~~~~~e~~~~~~~~~~e~~~l~~~l~~~~~~~~el~~l~-- 350 (743)
...+..+..++..+..++..|....... .....|......+...+......+..|..+..-+......+...-
T Consensus 1059 ~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~ 1138 (1822)
T KOG4674|consen 1059 TQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAV 1138 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4445555555555555555555444333 223445555556666666666666666555433333222222211
Q ss_pred -------HhHHhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 004587 351 -------ADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILD 403 (743)
Q Consensus 351 -------~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~ 403 (743)
.-..++...+..+..+..-+..++..+..+...|+..+.-+...+..+.+.+.
T Consensus 1139 ~n~S~~~~g~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~ 1198 (1822)
T KOG4674|consen 1139 SNLSAMLLGLSDLQNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLT 1198 (1822)
T ss_pred ccccccccchHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11334445555555556666666777777777777777766666666666554
No 17
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=6.8e-08 Score=106.86 Aligned_cols=85 Identities=13% Similarity=0.082 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhhhh--h----hhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 174 VHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKS--V----KCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQ 247 (743)
Q Consensus 174 ~l~~l~~~~~~~~~e~~~l~~e~~~l~~el~~l~~~l~~--~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~ 247 (743)
.+.++....+.....+...+.++..|...+......+.+ . +..........++..+..+...+...++++..++
T Consensus 427 ~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vae 506 (1293)
T KOG0996|consen 427 KKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAE 506 (1293)
T ss_pred hHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444443 0 0111112222344455555555555666666566
Q ss_pred HHHHHHHHHHH
Q 004587 248 VEKDNLAWRET 258 (743)
Q Consensus 248 ~e~~~l~~~~~ 258 (743)
.+++-+.....
T Consensus 507 sel~~L~~~~~ 517 (1293)
T KOG0996|consen 507 SELDILLSRHE 517 (1293)
T ss_pred HHHHHHHHHHH
Confidence 55555554433
No 18
>PRK03918 chromosome segregation protein; Provisional
Probab=99.55 E-value=1.5e-07 Score=111.65 Aligned_cols=13 Identities=8% Similarity=-0.394 Sum_probs=7.2
Q ss_pred CcCCCCCCCCCCC
Q 004587 726 CPGCAASFSPNDV 738 (743)
Q Consensus 726 Cp~c~~~~~~~~~ 738 (743)
+.+...||..-|.
T Consensus 815 ~lilDEp~~~lD~ 827 (880)
T PRK03918 815 LLILDEPTPFLDE 827 (880)
T ss_pred eEEEeCCCcccCH
Confidence 4455666665553
No 19
>PRK03918 chromosome segregation protein; Provisional
Probab=99.50 E-value=5e-07 Score=107.33 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=15.1
Q ss_pred HhhHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 004587 593 SQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKS 630 (743)
Q Consensus 593 ~~~~~~l~~~~~~~~e~~~~~~~l~~~l~~l~~~~~~~ 630 (743)
..+...+..+...+..+...+..+...+..+...+..+
T Consensus 662 ~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~ 699 (880)
T PRK03918 662 EELREEYLELSRELAGLRAELEELEKRREEIKKTLEKL 699 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444333333
No 20
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.49 E-value=3.4e-15 Score=170.26 Aligned_cols=216 Identities=23% Similarity=0.293 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004587 447 TAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERD 526 (743)
Q Consensus 447 ~~~~~~~~~~~~l~~~e~~i~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~el~~~~~~l~~~~~~~~ 526 (743)
.++.....+...+..+...+..++..++.......++...+...+..+..+..+++.+...++........+..++.++.
T Consensus 564 ~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~ 643 (859)
T PF01576_consen 564 HANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQ 643 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334456667778888888888888888888888888888888888888888888888777777777777667766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHH
Q 004587 527 DYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRL 606 (743)
Q Consensus 527 ~~~~~l~~e~~~~~~~~~~l~~e~~~l~~el~~l~~~l~~~~~~~~~le~~~~~l~~~l~~l~~el~~~~~~l~~~~~~~ 606 (743)
..+..+..... .+...+..+..++..+...++........+.+..+.....+..+..++..-+.....+...-
T Consensus 644 ~~~~~l~~~~~-------~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k 716 (859)
T PF01576_consen 644 ERLNELTSQNS-------SLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEK 716 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655443 55667777788888888888888888888888888888888888888877777766666666
Q ss_pred HHHHHHHHHHHhhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004587 607 SDVRKSSVQVRGSLEESQS--------KVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVLRLQAQT 669 (743)
Q Consensus 607 ~e~~~~~~~l~~~l~~l~~--------~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 669 (743)
..+...+.++...+..++. .+..+..+|.++...++........+...+..+.+++..+....
T Consensus 717 ~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~q~ 787 (859)
T PF01576_consen 717 KALERQVKELQARLEEAEQSALKGGKKQIAKLEARIRELEEELESEQRRRAEAQKQLRKLERRVKELQFQV 787 (859)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6666666777766666655 45566678888888898888888888888888888888876544
No 21
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=5.6e-07 Score=98.08 Aligned_cols=192 Identities=15% Similarity=0.200 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004587 471 QKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDD----MQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDAL 546 (743)
Q Consensus 471 ~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~e----l~~~~~~l~~~~~~~~~~~~~l~~e~~~~~~~~~~l 546 (743)
..+..+..++.++..+|.+....+......+..+.....+ -...+..+...+..+..++..-..+..+..+.+..+
T Consensus 741 ~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l 820 (1174)
T KOG0933|consen 741 DDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERL 820 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555544444444455444443322 233445555555566666666666777777777777
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 004587 547 LMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSK 626 (743)
Q Consensus 547 ~~e~~~l~~el~~l~~~l~~~~~~~~~le~~~~~l~~~l~~l~~el~~~~~~l~~~~~~~~e~~~~~~~l~~~l~~l~~~ 626 (743)
..+...+..++......+......+..+...+..+...+.....+......++...+..+.....++..+-...+.....
T Consensus 821 ~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e 900 (1174)
T KOG0933|consen 821 QLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSE 900 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Confidence 77888888888777777777777777777777777777777777777777777777777777666666666666655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 627 VYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKV 662 (743)
Q Consensus 627 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 662 (743)
.......+..+..++..+..........+..+..+.
T Consensus 901 ~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~ 936 (1174)
T KOG0933|consen 901 KSDGELERKKLEHEVTKLESEKANARKEVEKLLKKH 936 (1174)
T ss_pred hhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhc
Confidence 555555555555555555555554444444444443
No 22
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=3.8e-14 Score=121.70 Aligned_cols=55 Identities=35% Similarity=0.874 Sum_probs=49.6
Q ss_pred cccccccccccCC--ceeccCcccccHhhHHHHhccCCCCCcCCCCCCCCCCCcCcCC
Q 004587 688 ILKCSICLERPKE--VVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVYI 743 (743)
Q Consensus 688 ~~~C~iC~~~~~~--~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~~ 743 (743)
...||||+..|.. |+.++|||+||..||+..++. .++||+||+.+...++++|||
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhheeccC
Confidence 4799999999876 466899999999999999985 577999999999999999997
No 23
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.38 E-value=1.9e-13 Score=121.89 Aligned_cols=56 Identities=39% Similarity=0.893 Sum_probs=49.7
Q ss_pred ccccccccccccCCceeccCcccccHhhHHHHhcc---------------CCCCCcCCCCCCCCCCCcCcC
Q 004587 687 EILKCSICLERPKEVVITKCYHLFCNPCVQKVTES---------------RHRKCPGCAASFSPNDVKPVY 742 (743)
Q Consensus 687 ~~~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~---------------~~~~Cp~c~~~~~~~~~~~~~ 742 (743)
..+.|+||++.+++|++++|||.||+.|+..|+.. ....||+|+.++...++.++|
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 35899999999999999999999999999999642 234799999999999999988
No 24
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=1.9e-06 Score=94.04 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 279 SKIADLGIEIQKQIDEKNRIEMRLEE 304 (743)
Q Consensus 279 ~~i~~l~~~l~~~~~~~~~L~~~l~~ 304 (743)
.....+-..+..+....+.|..++..
T Consensus 479 q~~~~l~~~~~~lk~~~~~l~a~~~~ 504 (1174)
T KOG0933|consen 479 QRRAKLHEDIGRLKDELDRLLARLAN 504 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 33444445555555555555555533
No 25
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.36 E-value=4.9e-13 Score=89.28 Aligned_cols=39 Identities=36% Similarity=0.920 Sum_probs=32.1
Q ss_pred ccccccccCCceeccCcccccHhhHHHHhccCCC---CCcCC
Q 004587 691 CSICLERPKEVVITKCYHLFCNPCVQKVTESRHR---KCPGC 729 (743)
Q Consensus 691 C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~~~~---~Cp~c 729 (743)
||||.+.|++||.++|||+||..|+..++..... .||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999999999999986533 59988
No 26
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.30 E-value=1.5e-12 Score=98.12 Aligned_cols=53 Identities=25% Similarity=0.314 Sum_probs=48.8
Q ss_pred ccccccccccCCceeccCcccccHhhHHHHhccCCCCCcCCCCCCCCCCCcCcC
Q 004587 689 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 742 (743)
Q Consensus 689 ~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~ 742 (743)
+.||||+..+++|++++|||+||..|+..|+.. +..||+|+.++...++.+++
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~ 54 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNL 54 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCH
Confidence 689999999999999999999999999999986 67799999999988888764
No 27
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=99.27 E-value=7.7e-13 Score=124.65 Aligned_cols=58 Identities=31% Similarity=0.770 Sum_probs=52.1
Q ss_pred hhccccccccccccCCceeccCcccccHhhHHHHhccCCCCCcCCCCCCCCCCCcCcCC
Q 004587 685 YREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVYI 743 (743)
Q Consensus 685 l~~~~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~~ 743 (743)
+...+.|.||++.|+-|+++||||+||.-||..++.. +..||.|..+|...+++.++|
T Consensus 20 lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~i 77 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRI 77 (442)
T ss_pred hHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhH
Confidence 4445899999999999999999999999999999885 567999999999999988764
No 28
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.6e-12 Score=116.48 Aligned_cols=57 Identities=40% Similarity=0.909 Sum_probs=51.4
Q ss_pred hccccccccccccCCceeccCcccccHhhHHHHhccCC--CCCcCCCCCCCCCCCcCcC
Q 004587 686 REILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRH--RKCPGCAASFSPNDVKPVY 742 (743)
Q Consensus 686 ~~~~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~~~--~~Cp~c~~~~~~~~~~~~~ 742 (743)
...+.|.||++.-++||++.|||.||+.|+..|+..+. ..||+|...++...|.|+|
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 34589999999999999999999999999999987643 4589999999999999998
No 29
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=99.23 E-value=2.3e-12 Score=118.68 Aligned_cols=57 Identities=25% Similarity=0.542 Sum_probs=49.8
Q ss_pred hhccccccccccccCCceeccCcccccHhhHHHHhccCCCCCcCCCCCCCCCCCcCcC
Q 004587 685 YREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 742 (743)
Q Consensus 685 l~~~~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~ 742 (743)
|...+.|-||...|+-|+.++|||+||.-||.+++.+ +..||+|+.+|+..-++..+
T Consensus 22 LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s 78 (391)
T COG5432 22 LDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSS 78 (391)
T ss_pred chhHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccch
Confidence 4456899999999999999999999999999999985 67899999999877666544
No 30
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=4.2e-12 Score=118.61 Aligned_cols=53 Identities=34% Similarity=0.773 Sum_probs=47.0
Q ss_pred cccccccccccCCceeccCcccccHhhHHHHhccCCCCCcCCCCCCCCCCCcCc
Q 004587 688 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPV 741 (743)
Q Consensus 688 ~~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~ 741 (743)
...|++|++...+|..+||||+||++||..|...+ .-||.||..|.+++|.-+
T Consensus 239 ~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek-~eCPlCR~~~~pskvi~L 291 (293)
T KOG0317|consen 239 TRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEK-AECPLCREKFQPSKVICL 291 (293)
T ss_pred CCceEEEecCCCCCCcCcCcchHHHHHHHHHHccc-cCCCcccccCCCcceeee
Confidence 47999999999999999999999999999998864 449999999999887543
No 31
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.21 E-value=6.5e-12 Score=83.33 Aligned_cols=38 Identities=45% Similarity=1.104 Sum_probs=33.5
Q ss_pred ccccccccCCc-eeccCcccccHhhHHHHhccCCCCCcCC
Q 004587 691 CSICLERPKEV-VITKCYHLFCNPCVQKVTESRHRKCPGC 729 (743)
Q Consensus 691 C~iC~~~~~~~-~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c 729 (743)
|+||++.+.+| ++++|||+||..|+..|+.. +..||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 68999999999999999987 6789998
No 32
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.19 E-value=6.9e-12 Score=127.02 Aligned_cols=59 Identities=27% Similarity=0.640 Sum_probs=51.7
Q ss_pred HHhhccccccccccccCCceeccCcccccHhhHHHHhccCCCCCcCCCCCCCCCCCcCcC
Q 004587 683 REYREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 742 (743)
Q Consensus 683 ~~l~~~~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~ 742 (743)
..+...+.|+||+..|.+|++++|||+||..|+..|+.. ...||.|+.++....++++|
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~ 79 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNW 79 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccch
Confidence 345566999999999999999999999999999999875 45799999999887887776
No 33
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=6.5e-12 Score=126.90 Aligned_cols=56 Identities=38% Similarity=0.861 Sum_probs=51.7
Q ss_pred cccccccccccCCceeccCcccccHhhHHHHhccC----CCCCcCCCCCCCCCCCcCcCC
Q 004587 688 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESR----HRKCPGCAASFSPNDVKPVYI 743 (743)
Q Consensus 688 ~~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~~----~~~Cp~c~~~~~~~~~~~~~~ 743 (743)
...||||+.++.-|+.+.|||+||..|+-.+|... ...||+|+..|...||.++||
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~ 245 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFI 245 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeee
Confidence 58999999999999999999999999999999764 457999999999999999986
No 34
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=99.16 E-value=1.6e-11 Score=86.58 Aligned_cols=56 Identities=34% Similarity=0.768 Sum_probs=31.3
Q ss_pred HHhhccccccccccccCCcee-ccCcccccHhhHHHHhccCCCCCcCCCCCCCCCCCcCc
Q 004587 683 REYREILKCSICLERPKEVVI-TKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPV 741 (743)
Q Consensus 683 ~~l~~~~~C~iC~~~~~~~~~-~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~ 741 (743)
+.+...+.|++|+..++.||. ..|.|+||..|+...+.+ .||+|+.|.-..|++-+
T Consensus 2 ~~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~N 58 (65)
T PF14835_consen 2 ERLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQIN 58 (65)
T ss_dssp HHHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----
T ss_pred hHHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhh
Confidence 345667999999999999984 689999999999987763 49999999988888654
No 35
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.15 E-value=2.4e-11 Score=85.90 Aligned_cols=45 Identities=40% Similarity=1.070 Sum_probs=39.7
Q ss_pred ccccccccccCCceeccCccc-ccHhhHHHHhccCCCCCcCCCCCCC
Q 004587 689 LKCSICLERPKEVVITKCYHL-FCNPCVQKVTESRHRKCPGCAASFS 734 (743)
Q Consensus 689 ~~C~iC~~~~~~~~~~~Cgh~-fC~~C~~~~~~~~~~~Cp~c~~~~~ 734 (743)
..|+||++.+.+++++||||. ||..|..+|+. ....||+||.++.
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 689999999999999999999 99999999988 5677999999874
No 36
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.15 E-value=1.7e-11 Score=94.21 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=45.4
Q ss_pred cccccccccccCCceeccCcccccHhhHHHHhccCCCCCcCCCCCCCCCCCcCcC
Q 004587 688 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 742 (743)
Q Consensus 688 ~~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~ 742 (743)
.+.||||+..|.+||+++|||+||..||..|+......||+|+.++...++.+++
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~ 58 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNR 58 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-H
T ss_pred ccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECH
Confidence 4899999999999999999999999999999998788899999999998887764
No 37
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.11 E-value=0.00011 Score=88.96 Aligned_cols=41 Identities=12% Similarity=0.050 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 606 LSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERF 646 (743)
Q Consensus 606 ~~e~~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~~l~~~~~ 646 (743)
+.+...-+...+..+..+......+..++..+...+..+..
T Consensus 797 V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 837 (1201)
T PF12128_consen 797 VIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQ 837 (1201)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 44444444444444333333333333334444433333333
No 38
>PRK01156 chromosome segregation protein; Provisional
Probab=99.09 E-value=0.00012 Score=87.09 Aligned_cols=6 Identities=17% Similarity=0.468 Sum_probs=2.2
Q ss_pred HHHHHH
Q 004587 327 EDMSAM 332 (743)
Q Consensus 327 ~e~~~l 332 (743)
.++..+
T Consensus 423 ~~i~~l 428 (895)
T PRK01156 423 SKVSSL 428 (895)
T ss_pred HHHHHH
Confidence 333333
No 39
>PRK01156 chromosome segregation protein; Provisional
Probab=99.09 E-value=0.00012 Score=87.05 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 004587 374 SADQVAEIHKLQAMVQDLTDSNLELKLIL 402 (743)
Q Consensus 374 ~~~~~~~~~~l~~~i~~l~~~~~~~~~~~ 402 (743)
+..+...+..+...+..+...+..+....
T Consensus 418 ~~~l~~~i~~l~~~i~~l~~~~~el~~~~ 446 (895)
T PRK01156 418 LQDISSKVSSLNQRIRALRENLDELSRNM 446 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555544444333
No 40
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.07 E-value=7.8e-11 Score=79.59 Aligned_cols=39 Identities=46% Similarity=0.959 Sum_probs=36.1
Q ss_pred ccccccccCCce-eccCcccccHhhHHHHhc-cCCCCCcCC
Q 004587 691 CSICLERPKEVV-ITKCYHLFCNPCVQKVTE-SRHRKCPGC 729 (743)
Q Consensus 691 C~iC~~~~~~~~-~~~Cgh~fC~~C~~~~~~-~~~~~Cp~c 729 (743)
|+||+..+.+++ +++|||+||..|+..|+. .....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999998 899999999999999998 556779998
No 41
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=99.07 E-value=4.7e-11 Score=79.32 Aligned_cols=36 Identities=39% Similarity=0.956 Sum_probs=23.0
Q ss_pred ccccccccCC----ceeccCcccccHhhHHHHhccC---CCCCc
Q 004587 691 CSICLERPKE----VVITKCYHLFCNPCVQKVTESR---HRKCP 727 (743)
Q Consensus 691 C~iC~~~~~~----~~~~~Cgh~fC~~C~~~~~~~~---~~~Cp 727 (743)
||||.+ |.+ |++++|||+||..|+.+++... ..+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 988 8999999999999999998853 44687
No 42
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=99.05 E-value=1.1e-10 Score=79.65 Aligned_cols=41 Identities=37% Similarity=0.996 Sum_probs=35.2
Q ss_pred ccccccccc---CCceeccCcccccHhhHHHHhccCCCCCcCCCC
Q 004587 690 KCSICLERP---KEVVITKCYHLFCNPCVQKVTESRHRKCPGCAA 731 (743)
Q Consensus 690 ~C~iC~~~~---~~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~ 731 (743)
.|++|+..| ..+++++|||+||..|+..+. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 499999999 346899999999999999998 45678999984
No 43
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.03 E-value=8.5e-05 Score=81.33 Aligned_cols=41 Identities=29% Similarity=0.387 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004587 223 LSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMK 263 (743)
Q Consensus 223 ~~l~~~l~~~~~~~~~~~~~~~~l~~e~~~l~~~~~~~~~~ 263 (743)
..+.+.++....++....-....+..+-+.+...+..++..
T Consensus 331 ~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~ 371 (1200)
T KOG0964|consen 331 QKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQK 371 (1200)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555444443
No 44
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.03 E-value=0.00011 Score=82.36 Aligned_cols=134 Identities=15% Similarity=0.245 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004587 460 AAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRA 539 (743)
Q Consensus 460 ~~~e~~i~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~el~~~~~~l~~~~~~~~~~~~~l~~e~~~~ 539 (743)
+.....+..+..+++.+...+..+...++.....+..+...+..+.+.+..+..+...|...+..++....++..+....
T Consensus 903 q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~ 982 (1293)
T KOG0996|consen 903 QAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEA 982 (1293)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444555555555555555666666555555555566666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 540 RQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRS 593 (743)
Q Consensus 540 ~~~~~~l~~e~~~l~~el~~l~~~l~~~~~~~~~le~~~~~l~~~l~~l~~el~ 593 (743)
.+.+..+..+...+...+..+......++...-.++.++......+..+...+.
T Consensus 983 ~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~~K~e~~~~~l~e~~~~~~ 1036 (1293)
T KOG0996|consen 983 EESLKEIKKELRDLKSELENIKKSENELKAERIDIENKLEAINGELNEIESKIK 1036 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhhh
Confidence 666666666666666665555555555554222255555544444444444443
No 45
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.01 E-value=1e-10 Score=80.15 Aligned_cols=40 Identities=35% Similarity=0.853 Sum_probs=34.0
Q ss_pred cccccccccC---CceeccCcccccHhhHHHHhccCCCCCcCCC
Q 004587 690 KCSICLERPK---EVVITKCYHLFCNPCVQKVTESRHRKCPGCA 730 (743)
Q Consensus 690 ~C~iC~~~~~---~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~ 730 (743)
.|+||++.|. .++.++|||+||..|+..|+.. +..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 6999999984 3578899999999999999986 46899996
No 46
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=0.0001 Score=79.95 Aligned_cols=68 Identities=18% Similarity=0.190 Sum_probs=48.1
Q ss_pred cccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHhHHHHHhhHHHHHHHHHHHHHhhHhHHHh
Q 004587 67 ASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAAL 134 (743)
Q Consensus 67 ~~~~l~~~~~~~~~~l~~l~~~~~~~~~el~~~~~~~~~~~~e~~~l~~el~~~~~~le~~~~~~~~~ 134 (743)
-...|+.....+......+..+...+...+.........+...+..+..+++.+......+...++..
T Consensus 56 e~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~ 123 (698)
T KOG0978|consen 56 ENEKLQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEA 123 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777777777777777777777777777777777777777666655555555544
No 47
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.96 E-value=0.00015 Score=79.16 Aligned_cols=54 Identities=20% Similarity=0.190 Sum_probs=21.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 610 RKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVL 663 (743)
Q Consensus 610 ~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 663 (743)
...+..+..............+..+..+..+++..+..+..++..+....+.+.
T Consensus 371 ~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~e 424 (522)
T PF05701_consen 371 PKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAE 424 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333334444444444444444444444444444433
No 48
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.95 E-value=8.9e-07 Score=83.19 Aligned_cols=156 Identities=13% Similarity=0.144 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q 004587 512 QTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCL--DQAQRLA 589 (743)
Q Consensus 512 ~~~~~~l~~~~~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~el~~l~~~l~~~~~~~~~le~~~~~l~--~~l~~l~ 589 (743)
..++.++.-........+.++..++..+...+..+..++..++.++..+...+..+..++...+..+.... .++..|.
T Consensus 16 D~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~ 95 (239)
T COG1579 16 DLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALN 95 (239)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 33333443444444444555555555555555555555555555555555555555555555544442221 2233344
Q ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004587 590 EDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVLRLQAQT 669 (743)
Q Consensus 590 ~el~~~~~~l~~~~~~~~e~~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 669 (743)
.++..+......+...+..+...+..+...+..+...+......+.+....++ ..+..+.++......+...+...+
T Consensus 96 ~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e---~e~~~i~e~~~~~~~~~~~L~~~l 172 (239)
T COG1579 96 IEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLE---EEVAEIREEGQELSSKREELKEKL 172 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444444444444444444444444444444444444444444444333333 334444444444555555555444
Q ss_pred c
Q 004587 670 E 670 (743)
Q Consensus 670 ~ 670 (743)
+
T Consensus 173 ~ 173 (239)
T COG1579 173 D 173 (239)
T ss_pred C
Confidence 3
No 49
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.95 E-value=3.8e-10 Score=106.27 Aligned_cols=47 Identities=28% Similarity=0.833 Sum_probs=39.4
Q ss_pred cccccccccccCCc--------eeccCcccccHhhHHHHhccCCCCCcCCCCCCCC
Q 004587 688 ILKCSICLERPKEV--------VITKCYHLFCNPCVQKVTESRHRKCPGCAASFSP 735 (743)
Q Consensus 688 ~~~C~iC~~~~~~~--------~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~ 735 (743)
...|+||++.+.++ ++.+|||+||..|+..|... ...||+||.+|..
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~~ 228 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFIS 228 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEeeE
Confidence 47999999987653 45689999999999999874 5679999999863
No 50
>PHA02926 zinc finger-like protein; Provisional
Probab=98.94 E-value=5.1e-10 Score=100.49 Aligned_cols=49 Identities=29% Similarity=0.735 Sum_probs=38.9
Q ss_pred ccccccccccccCC---------ceeccCcccccHhhHHHHhccC-----CCCCcCCCCCCCC
Q 004587 687 EILKCSICLERPKE---------VVITKCYHLFCNPCVQKVTESR-----HRKCPGCAASFSP 735 (743)
Q Consensus 687 ~~~~C~iC~~~~~~---------~~~~~Cgh~fC~~C~~~~~~~~-----~~~Cp~c~~~~~~ 735 (743)
....|+||++.... ++..+|||+||..|+..|...+ .+.||+||..|..
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 35899999987422 3566999999999999998753 3459999999864
No 51
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.91 E-value=8.5e-10 Score=76.83 Aligned_cols=44 Identities=39% Similarity=0.925 Sum_probs=37.5
Q ss_pred cccccccccCCceec-cCcccccHhhHHHHhccCCCCCcCCCCCC
Q 004587 690 KCSICLERPKEVVIT-KCYHLFCNPCVQKVTESRHRKCPGCAASF 733 (743)
Q Consensus 690 ~C~iC~~~~~~~~~~-~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~ 733 (743)
.|+||+..+..++.+ +|||.||..|+..|+......||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999999777655 59999999999999886567899998764
No 52
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.86 E-value=0.00087 Score=81.15 Aligned_cols=59 Identities=8% Similarity=0.046 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 607 SDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVLRL 665 (743)
Q Consensus 607 ~e~~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l 665 (743)
.++...+...+.+-+.+...+...+.++..+...+.........+...+...+......
T Consensus 1063 ~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~~W~~v 1121 (1486)
T PRK04863 1063 DELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGWCAV 1121 (1486)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666666666666666666666554443
No 53
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=8.5e-10 Score=101.95 Aligned_cols=50 Identities=40% Similarity=0.796 Sum_probs=43.9
Q ss_pred ccccccccccCCceeccCcccccHhhHHH-HhccCCCCCcCCCCCCCCCCC
Q 004587 689 LKCSICLERPKEVVITKCYHLFCNPCVQK-VTESRHRKCPGCAASFSPNDV 738 (743)
Q Consensus 689 ~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~-~~~~~~~~Cp~c~~~~~~~~~ 738 (743)
..|++|++....|+.++|||+||+.|+-. |-..+.-+||.||.....++|
T Consensus 216 ~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 216 YKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred cceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 58999999999999999999999999999 555455579999999887766
No 54
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.85 E-value=1.6e-09 Score=72.79 Aligned_cols=39 Identities=44% Similarity=1.014 Sum_probs=35.8
Q ss_pred ccccccccCCceeccCcccccHhhHHHHhccCCCCCcCC
Q 004587 691 CSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 729 (743)
Q Consensus 691 C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c 729 (743)
|+||+.....+++++|||.||..|+..|+......||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999988566779988
No 55
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.83 E-value=2e-05 Score=76.75 Aligned_cols=197 Identities=16% Similarity=0.237 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 004587 459 LAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVR 538 (743)
Q Consensus 459 l~~~e~~i~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~el~~~~~~l~~~~~~~~~~~~~l~~e~~~ 538 (743)
+..++.++..+...+..+...+......+......+.......+.....+..+..........+..++..+.........
T Consensus 31 ~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee 110 (237)
T PF00261_consen 31 AEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEE 110 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444455555555555555
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHh
Q 004587 539 ARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRG 618 (743)
Q Consensus 539 ~~~~~~~l~~e~~~l~~el~~l~~~l~~~~~~~~~le~~~~~l~~~l~~l~~el~~~~~~l~~~~~~~~e~~~~~~~l~~ 618 (743)
+...|......+..+...+..+...++.....+..++..+..+...+..++..-..+....+.+..++..+...+..+..
T Consensus 111 ~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~ 190 (237)
T PF00261_consen 111 AERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAEN 190 (237)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555444444444444444445444444444444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 619 SLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDL 655 (743)
Q Consensus 619 ~l~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 655 (743)
..+.....+..+...+..+...|...+..+..+..++
T Consensus 191 Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 191 RAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443333333
No 56
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=0.00047 Score=75.75 Aligned_cols=45 Identities=18% Similarity=0.227 Sum_probs=25.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhhhh
Q 004587 168 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKS 212 (743)
Q Consensus 168 ~~~~~~~l~~l~~~~~~~~~e~~~l~~e~~~l~~el~~l~~~l~~ 212 (743)
+..+...+.+.+..+......+..+..+-..+...|..+......
T Consensus 330 l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~ 374 (1200)
T KOG0964|consen 330 LQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRD 374 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555556666666666666666555554433
No 57
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=7.6e-10 Score=73.90 Aligned_cols=45 Identities=33% Similarity=0.819 Sum_probs=42.0
Q ss_pred ccccccccccCCceeccCcccc-cHhhHHHHhccCCCCCcCCCCCC
Q 004587 689 LKCSICLERPKEVVITKCYHLF-CNPCVQKVTESRHRKCPGCAASF 733 (743)
Q Consensus 689 ~~C~iC~~~~~~~~~~~Cgh~f-C~~C~~~~~~~~~~~Cp~c~~~~ 733 (743)
-.|.||.+...+.|+..|||+. |+.|--+.++..+..||+||.++
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 4899999999999999999998 99999999987788899999997
No 58
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=0.00076 Score=75.28 Aligned_cols=108 Identities=15% Similarity=0.256 Sum_probs=45.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004587 411 DSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSK 490 (743)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~e~~i~~l~~~l~~~~~~~~~l~~~l~~~ 490 (743)
+...+..|...-..+..++..+..+-. ........+..++..+..+...+..+...+.....++...
T Consensus 650 dek~~~~L~~~k~rl~eel~ei~~~~~-------------e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~ 716 (1141)
T KOG0018|consen 650 DEKEVDQLKEKKERLLEELKEIQKRRK-------------EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRT 716 (1141)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhh-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555543110 1122223344444444444444444443333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 004587 491 NEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIK 531 (743)
Q Consensus 491 ~~e~~~l~~e~~~l~~~~~el~~~~~~l~~~~~~~~~~~~~ 531 (743)
+..+....-++-.+...+.........|...+...++.+.+
T Consensus 717 ~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~ 757 (1141)
T KOG0018|consen 717 ESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFK 757 (1141)
T ss_pred HHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444444444444443
No 59
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.75 E-value=0.00063 Score=72.85 Aligned_cols=65 Identities=22% Similarity=0.141 Sum_probs=44.9
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHhHHHHHhhHHHHHHHHHHHHHhhHhHHH
Q 004587 69 SNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAA 133 (743)
Q Consensus 69 ~~l~~~~~~~~~~l~~l~~~~~~~~~el~~~~~~~~~~~~e~~~l~~el~~~~~~le~~~~~~~~ 133 (743)
-.+++.+...+.++..|+..+..++.+...+.+.++-+...++.-.-+++.+.++++.....+.+
T Consensus 95 ~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsA 159 (1265)
T KOG0976|consen 95 NLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSA 159 (1265)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 34566677777777777777777777777777777777777666666776666666665555443
No 60
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.75 E-value=4.9e-05 Score=73.96 Aligned_cols=195 Identities=12% Similarity=0.169 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 004587 455 SQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVL 534 (743)
Q Consensus 455 ~~~~l~~~e~~i~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~el~~~~~~l~~~~~~~~~~~~~l~~ 534 (743)
+...+.........+..++..+...+..+...+...+..+......+..+.+..++.......+..........+..+..
T Consensus 20 ~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~ 99 (237)
T PF00261_consen 20 AEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQ 99 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555555555555555566666666666666666665555555666666666
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHH
Q 004587 535 EGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSV 614 (743)
Q Consensus 535 e~~~~~~~~~~l~~e~~~l~~el~~l~~~l~~~~~~~~~le~~~~~l~~~l~~l~~el~~~~~~l~~~~~~~~e~~~~~~ 614 (743)
.+..+.................+..+...+.....++..++..+..+...+..+...+..+......+......+...+.
T Consensus 100 ~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~ 179 (237)
T PF00261_consen 100 QLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIR 179 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 66555555554444444444444444444444444444444444444444444444444433333333333444444444
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 615 QVRGSLEESQSKVYKSRLTLMELQIELVKERFAKK 649 (743)
Q Consensus 615 ~l~~~l~~l~~~~~~~~~~l~~~~~~l~~~~~~~~ 649 (743)
.|...+..+..........+..+...++.+...+.
T Consensus 180 ~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~ 214 (237)
T PF00261_consen 180 DLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELE 214 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444434433333333333333
No 61
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.74 E-value=0.00081 Score=73.15 Aligned_cols=54 Identities=20% Similarity=0.217 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 608 DVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRK 661 (743)
Q Consensus 608 e~~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~ 661 (743)
++..+++.++-.+..+..++.....-+-+...-+.+.+.....+.+++..+...
T Consensus 494 DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq 547 (1243)
T KOG0971|consen 494 DLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQ 547 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444445555555555555555555555555555555555555543
No 62
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.71 E-value=0.00094 Score=72.66 Aligned_cols=151 Identities=13% Similarity=0.161 Sum_probs=77.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccch--hhHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHhh
Q 004587 370 LLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDS--RDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKT 447 (743)
Q Consensus 370 l~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 447 (743)
...+...+..++..++..++.+.-+++.++.....-|+..... -.+..++..-.+++.-+..|+.-...
T Consensus 323 AEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~--------- 393 (1243)
T KOG0971|consen 323 AEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSAS--------- 393 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchH---------
Confidence 3444555556666677777777777766665554332222111 22666777766777777666641110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004587 448 AIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDD 527 (743)
Q Consensus 448 ~~~~~~~~~~~l~~~e~~i~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~el~~~~~~l~~~~~~~~~ 527 (743)
.......+..++.....++.++...-+.+.++++.++..+..+++.++....- ..-+..+...+-++...+..+++
T Consensus 394 ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGA----E~MV~qLtdknlnlEekVklLee 469 (1243)
T KOG0971|consen 394 EKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGA----EEMVEQLTDKNLNLEEKVKLLEE 469 (1243)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH----HHHHHHHHhhccCHHHHHHHHHH
Confidence 01122344455566666666666666666666555555555555555522111 11123333333444455555555
Q ss_pred HHHHHH
Q 004587 528 YNIKLV 533 (743)
Q Consensus 528 ~~~~l~ 533 (743)
.+..|.
T Consensus 470 tv~dlE 475 (1243)
T KOG0971|consen 470 TVGDLE 475 (1243)
T ss_pred HHHHHH
Confidence 555443
No 63
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.69 E-value=0.0013 Score=72.73 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004587 459 LAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDD 510 (743)
Q Consensus 459 l~~~e~~i~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~e 510 (743)
-..++..+..+...+..+..+..+++...+.+..+.+.+..++......+..
T Consensus 410 ~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~r 461 (1195)
T KOG4643|consen 410 HKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSR 461 (1195)
T ss_pred hHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3445556666666666666666666666666666666666666666555443
No 64
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.66 E-value=0.00046 Score=72.93 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=22.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 004587 366 ECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLI 401 (743)
Q Consensus 366 ~~~~l~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~ 401 (743)
++..|.++++.+...+..|.++-..|..++..++..
T Consensus 43 El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~ 78 (546)
T KOG0977|consen 43 ELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGV 78 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666666666666666666666666665555543
No 65
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.64 E-value=0.0018 Score=71.65 Aligned_cols=58 Identities=17% Similarity=0.220 Sum_probs=38.8
Q ss_pred cccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHhHHHHHhhHHHHHHHHHHH
Q 004587 67 ASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKEL 124 (743)
Q Consensus 67 ~~~~l~~~~~~~~~~l~~l~~~~~~~~~el~~~~~~~~~~~~e~~~l~~el~~~~~~l 124 (743)
....+..++..++..+..|+.++.+..+.+..++..+..+.+++..+..+.+....+.
T Consensus 171 ~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea 228 (1195)
T KOG4643|consen 171 KNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEA 228 (1195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777777777777777777777777777777777777666666554443
No 66
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=98.60 E-value=0.0034 Score=72.67 Aligned_cols=97 Identities=15% Similarity=0.003 Sum_probs=70.5
Q ss_pred HHHHHHHHHhhcchHHHHhccccCcc-hhhccccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHhHHHHHhhHH
Q 004587 37 LAAVDNLWHLKGGLYAAVLKDLQDGG-SKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKG 115 (743)
Q Consensus 37 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~el~~~~~~~~~~~~e~~~l~~ 115 (743)
...+..+..+...+..++......+. ..+.++..+.....++...+.....++..++.++..+......+......+..
T Consensus 267 ~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~e~~~l~~~k~~~~~ 346 (1294)
T KOG0962|consen 267 LKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEERLEEMGEKLRELEREISDLNEERSSLIQLKTELDL 346 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433333 44558999999999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHhhHhHHH
Q 004587 116 ELESAVKELEECNCKLAA 133 (743)
Q Consensus 116 el~~~~~~le~~~~~~~~ 133 (743)
+++.+..+.+-+......
T Consensus 347 ~~~~lq~e~~~~~~l~~~ 364 (1294)
T KOG0962|consen 347 EQSELQAEAEFHQELKRQ 364 (1294)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888877766555444333
No 67
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.59 E-value=0.0052 Score=74.67 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-chhHHHHHHHHHHhhcccccccc
Q 004587 635 MELQIELVKERFAKKRLEEDLEMGRRKVLRLQAQTEG-SSIIEELQQELREYREILKCSIC 694 (743)
Q Consensus 635 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~-~~~~~~l~~e~~~l~~~~~C~iC 694 (743)
.++...+...+..+..++..+...+.++..+...... ......+...+...+.. +|||-
T Consensus 1063 ~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~~-W~~v~ 1122 (1486)
T PRK04863 1063 DELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAG-WCAVL 1122 (1486)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 4555555555666666666666666666666554332 12333444444444433 66654
No 68
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.55 E-value=0.0023 Score=68.67 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=17.8
Q ss_pred ccccHhhHHHHhccCCCCCcCCCCC
Q 004587 708 HLFCNPCVQKVTESRHRKCPGCAAS 732 (743)
Q Consensus 708 h~fC~~C~~~~~~~~~~~Cp~c~~~ 732 (743)
|.-|..|+..-+.....+-|.||.+
T Consensus 633 ~~elvtyL~sqi~~kqtkqpklgrr 657 (1265)
T KOG0976|consen 633 HPELVTYLPSQIDAKQTKQPKLGRR 657 (1265)
T ss_pred cHHHHhhchhhhchhcccCCccCCh
Confidence 5567777776666666778888865
No 69
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.53 E-value=0.0032 Score=68.95 Aligned_cols=33 Identities=18% Similarity=0.144 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHH
Q 004587 174 VHKELMDQASHQLLELKGLHDGRIKVLQQLYNL 206 (743)
Q Consensus 174 ~l~~l~~~~~~~~~e~~~l~~e~~~l~~el~~l 206 (743)
+++..+........++.....++..+..++...
T Consensus 117 ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~ 149 (522)
T PF05701_consen 117 ELESAREQYASAVAELDSVKQELEKLRQELASA 149 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333444444443333
No 70
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.53 E-value=0.0078 Score=73.30 Aligned_cols=10 Identities=10% Similarity=-0.084 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 004587 639 IELVKERFAK 648 (743)
Q Consensus 639 ~~l~~~~~~~ 648 (743)
..+......+
T Consensus 902 ~~~~~~~~~~ 911 (1201)
T PF12128_consen 902 RDLEDLLQRR 911 (1201)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 71
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.4e-08 Score=97.78 Aligned_cols=53 Identities=30% Similarity=0.703 Sum_probs=45.0
Q ss_pred HHhhccccccccccccCCceec-cCcccccHhhHHHHhccCCCCCcCCCCCCCC
Q 004587 683 REYREILKCSICLERPKEVVIT-KCYHLFCNPCVQKVTESRHRKCPGCAASFSP 735 (743)
Q Consensus 683 ~~l~~~~~C~iC~~~~~~~~~~-~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~ 735 (743)
..+...+.||||+...+..+.+ .|+|.||+.||...++..+..||.||+.+..
T Consensus 38 ~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 38 AMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS 91 (381)
T ss_pred HHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence 3344558999999999887655 6999999999999999889999999988754
No 72
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.50 E-value=9.5e-07 Score=101.04 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 004587 646 FAKKRLEEDLEMGRRKVLRLQAQT 669 (743)
Q Consensus 646 ~~~~~~~~~~~~l~~~~~~l~~~~ 669 (743)
.++..++.++..+.++..+|+...
T Consensus 606 ~e~~~l~~~~~~~ekr~~RLkevf 629 (722)
T PF05557_consen 606 KEIAELKAELASAEKRNQRLKEVF 629 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566666666555443
No 73
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=4.7e-08 Score=92.07 Aligned_cols=48 Identities=23% Similarity=0.615 Sum_probs=44.8
Q ss_pred ccccccccccCCceeccCcccccHhhHHHHhccCCCCCcCCCCCCCCC
Q 004587 689 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPN 736 (743)
Q Consensus 689 ~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~ 736 (743)
..|+||+....-|+.++|+|.||+-||+.........||+||.+|..+
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 589999999999999999999999999999998888899999999764
No 74
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.49 E-value=0.0031 Score=66.87 Aligned_cols=47 Identities=19% Similarity=0.163 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 619 SLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVLRL 665 (743)
Q Consensus 619 ~l~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l 665 (743)
.+.+....+.+++..+.-++.+-+.+..+...+...+..|+.++..+
T Consensus 411 qlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 411 QLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444444455555555566666666666665544
No 75
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.48 E-value=9e-08 Score=92.89 Aligned_cols=39 Identities=23% Similarity=0.621 Sum_probs=34.4
Q ss_pred cCcccccHhhHHHHhccCCCCCcCCCCCCCCCCCcCcCC
Q 004587 705 KCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVYI 743 (743)
Q Consensus 705 ~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~~ 743 (743)
+|||.||.+|+..+|..+...||.|+.++....+++..|
T Consensus 25 ~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F 63 (309)
T TIGR00570 25 VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLF 63 (309)
T ss_pred CCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcccccc
Confidence 799999999999998777778999999999988876644
No 76
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.42 E-value=0.0046 Score=65.65 Aligned_cols=44 Identities=23% Similarity=0.250 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004587 626 KVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVLRLQAQT 669 (743)
Q Consensus 626 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 669 (743)
++.+....+.++...+.-...+...+..+...+...+..|....
T Consensus 411 qlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~ 454 (546)
T PF07888_consen 411 QLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRL 454 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555566666666666666665544
No 77
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.42 E-value=0.0072 Score=67.76 Aligned_cols=52 Identities=17% Similarity=0.179 Sum_probs=26.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 613 SVQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVLR 664 (743)
Q Consensus 613 ~~~l~~~l~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 664 (743)
...|+.....|-.+-...-+.+++++..+..-...+.....++..|..++..
T Consensus 1691 Ae~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~ 1742 (1758)
T KOG0994|consen 1691 AEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVES 1742 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Confidence 3444444444444444444455555555555555555555555555555553
No 78
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.42 E-value=0.0047 Score=65.57 Aligned_cols=89 Identities=16% Similarity=0.100 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 172 ESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKD 251 (743)
Q Consensus 172 ~~~l~~l~~~~~~~~~e~~~l~~e~~~l~~el~~l~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~e~~ 251 (743)
+.+|..|...+...-.....|+.++..|..++..++......... .......++..+...+++.......++.++.
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~----ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~ 116 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSG----IKAKYEAELATARKLLDETARERAKLEIEIT 116 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcc----hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777788889999999999999888877652111 1112344555555666666556666666666
Q ss_pred HHHHHHHHhhhhh
Q 004587 252 NLAWRETELNMKI 264 (743)
Q Consensus 252 ~l~~~~~~~~~~~ 264 (743)
.+...+.++..+.
T Consensus 117 kl~~e~~elr~~~ 129 (546)
T KOG0977|consen 117 KLREELKELRKKL 129 (546)
T ss_pred HhHHHHHHHHHHH
Confidence 6555555555444
No 79
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.40 E-value=0.0083 Score=67.88 Aligned_cols=20 Identities=20% Similarity=0.317 Sum_probs=11.5
Q ss_pred ccccHhhHHHHhccCCCCCcC
Q 004587 708 HLFCNPCVQKVTESRHRKCPG 728 (743)
Q Consensus 708 h~fC~~C~~~~~~~~~~~Cp~ 728 (743)
.+|-.-|+--.+|. ..-||+
T Consensus 995 RSFsTv~lllsLW~-~me~Pf 1014 (1074)
T KOG0250|consen 995 RSFSTVCLLLSLWE-VMECPF 1014 (1074)
T ss_pred chHHHHHHHHHHhH-hhcCch
Confidence 34666676655553 345886
No 80
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.6e-07 Score=87.22 Aligned_cols=47 Identities=28% Similarity=0.625 Sum_probs=39.2
Q ss_pred cccccccccccCCce-eccCcccccHhhHHHHhccC-CCCCcCCCCCCC
Q 004587 688 ILKCSICLERPKEVV-ITKCYHLFCNPCVQKVTESR-HRKCPGCAASFS 734 (743)
Q Consensus 688 ~~~C~iC~~~~~~~~-~~~Cgh~fC~~C~~~~~~~~-~~~Cp~c~~~~~ 734 (743)
..+||+|+.+.+.|- +.+|||+||..|+.+..... ...||.|+.+..
T Consensus 239 ~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 239 DTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 479999999999995 56799999999999875532 457999998865
No 81
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.38 E-value=0.0044 Score=63.80 Aligned_cols=107 Identities=18% Similarity=0.243 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHH
Q 004587 458 RLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQ----TQNQQLLQQITERDDYNIKLV 533 (743)
Q Consensus 458 ~l~~~e~~i~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~el~----~~~~~l~~~~~~~~~~~~~l~ 533 (743)
++..+..........+..+..++..+...+..+..++..+......+...+.+++ .+...+...+..++..+..+.
T Consensus 196 k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~ 275 (312)
T PF00038_consen 196 KLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELR 275 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 3334444444444444444444444444444444444444444444444433332 223334444555555555555
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004587 534 LEGVRARQLQDALLMDKHMMESEIQQANASL 564 (743)
Q Consensus 534 ~e~~~~~~~~~~l~~e~~~l~~el~~l~~~l 564 (743)
.+.......|..|..-+-.|..+|......+
T Consensus 276 ~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~LL 306 (312)
T PF00038_consen 276 EEMARQLREYQELLDVKLALDAEIATYRKLL 306 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5555555555666666666666666555444
No 82
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=98.38 E-value=9.2e-08 Score=83.54 Aligned_cols=46 Identities=26% Similarity=0.616 Sum_probs=40.2
Q ss_pred ccccccccccCCceeccCcccccHhhHHHHhccCCCCCcCCCCCCCC
Q 004587 689 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSP 735 (743)
Q Consensus 689 ~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~ 735 (743)
+.|.||...|..||++.|||.||..|.-+-+.. ...|-+|++....
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t~G 242 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKATYG 242 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhhcc
Confidence 699999999999999999999999999887763 5679999987543
No 83
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.37 E-value=0.0047 Score=63.59 Aligned_cols=12 Identities=33% Similarity=0.747 Sum_probs=7.0
Q ss_pred HHHHHHHHhhcc
Q 004587 677 ELQQELREYREI 688 (743)
Q Consensus 677 ~l~~e~~~l~~~ 688 (743)
.|+.+|..|+..
T Consensus 294 ~Ld~EIatYR~L 305 (312)
T PF00038_consen 294 ALDAEIATYRKL 305 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 456666666543
No 84
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.35 E-value=2.7e-07 Score=70.61 Aligned_cols=40 Identities=30% Similarity=0.732 Sum_probs=32.0
Q ss_pred cccccccccCC------------c-eeccCcccccHhhHHHHhccCCCCCcCCC
Q 004587 690 KCSICLERPKE------------V-VITKCYHLFCNPCVQKVTESRHRKCPGCA 730 (743)
Q Consensus 690 ~C~iC~~~~~~------------~-~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~ 730 (743)
.|+||...+.+ + +..+|||.|...||..|+.. ...||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 59999999833 2 34589999999999999985 45899997
No 85
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=98.35 E-value=0.014 Score=67.87 Aligned_cols=122 Identities=12% Similarity=0.136 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 004587 496 AYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLN-FFDMKAARI 574 (743)
Q Consensus 496 ~l~~e~~~l~~~~~el~~~~~~l~~~~~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~el~~l~~~l~-~~~~~~~~l 574 (743)
.+..++..+..+...+..++... .+.....+...|...+..+......+.++...+...+..+..++. ...+....-
T Consensus 1012 ~l~~q~~e~~re~~~ld~Qi~~~--~~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~~~~~kd~~~n 1089 (1294)
T KOG0962|consen 1012 NLERKLKELERELSELDKQILEA--DIKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELREKDFKDAEKN 1089 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhhhhhhccHHHH
Confidence 44445555555555555554442 244555677777777777777777777888888888777777776 223333222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHH-----HHHHHHHHHHHHHHHHhh
Q 004587 575 ENQLRFCLDQAQRLAEDRSQNSANLEN-----TQKRLSDVRKSSVQVRGS 619 (743)
Q Consensus 575 e~~~~~l~~~l~~l~~el~~~~~~l~~-----~~~~~~e~~~~~~~l~~~ 619 (743)
....-.-.....-...++..+...++. |..++.+++..+..+|..
T Consensus 1090 yr~~~ie~~tt~~~~~DL~ky~~aLD~Aim~fHs~KMeeiN~iI~elW~~ 1139 (1294)
T KOG0962|consen 1090 YRKALIELKTTELSNKDLDKYYKALDKAIMQFHSMKMEEINRIIRELWRK 1139 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222222233444556666666666655 555677777777777764
No 86
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=98.34 E-value=2.4e-07 Score=63.47 Aligned_cols=48 Identities=27% Similarity=0.571 Sum_probs=40.1
Q ss_pred cccccccccccCCceeccCcccccHhhHHHHhccCCCCCcCCCCCCCCCCC
Q 004587 688 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDV 738 (743)
Q Consensus 688 ~~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~~~ 738 (743)
...|..|...-+..+++||||..|..|..-. +..-||+|+++|...++
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFDDP 54 (55)
T ss_pred ceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCCCC
Confidence 4688889888788899999999999999864 34559999999987664
No 87
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2e-07 Score=98.81 Aligned_cols=46 Identities=39% Similarity=0.813 Sum_probs=41.1
Q ss_pred hhccccccccccccCCceeccCcccccHhhHHHHhccCCCCCcCCCC
Q 004587 685 YREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAA 731 (743)
Q Consensus 685 l~~~~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~ 731 (743)
+...+.|+||++.|+.|++++|||+||..|+..++. ....||.|+.
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC
Confidence 344589999999999999999999999999999998 5567999994
No 88
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=3.7e-07 Score=88.10 Aligned_cols=45 Identities=24% Similarity=0.579 Sum_probs=38.5
Q ss_pred cccccccccc-cCC------------ceeccCcccccHhhHHHHhccCCCCCcCCCCCC
Q 004587 688 ILKCSICLER-PKE------------VVITKCYHLFCNPCVQKVTESRHRKCPGCAASF 733 (743)
Q Consensus 688 ~~~C~iC~~~-~~~------------~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~ 733 (743)
...|.||++. |.. |..+||||+|-..|++.|.. |+..||+||.|+
T Consensus 287 D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~E-RqQTCPICr~p~ 344 (491)
T COG5243 287 DRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLE-RQQTCPICRRPV 344 (491)
T ss_pred CCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHH-hccCCCcccCcc
Confidence 4799999997 322 57899999999999999988 677899999994
No 89
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.29 E-value=0.013 Score=65.23 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=10.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004587 482 SLSDALKSKNEEIEAYLSEIETIGQS 507 (743)
Q Consensus 482 ~l~~~l~~~~~e~~~l~~e~~~l~~~ 507 (743)
.+...+..+......+..+++.+...
T Consensus 314 ~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 314 TLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33333333333333444444444333
No 90
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.28 E-value=0.013 Score=64.90 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 278 DSKIADLGIEIQKQIDEKNRIEMRLEE 304 (743)
Q Consensus 278 ~~~i~~l~~~l~~~~~~~~~L~~~l~~ 304 (743)
...+..+...+..++..+..+...+..
T Consensus 100 ~~~i~~~~~~l~~~e~~i~~i~~~l~~ 126 (560)
T PF06160_consen 100 KQAIKEIEEQLDEIEEDIKEILDELDE 126 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555544433
No 91
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.27 E-value=0.015 Score=65.34 Aligned_cols=22 Identities=9% Similarity=0.046 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 004587 415 VLAARDLEYKAWAHVHSLKSSL 436 (743)
Q Consensus 415 ~~~l~~~~~~~~~~~~~l~~~l 436 (743)
...|..+..+++...+.++...
T Consensus 1544 a~~L~s~A~~a~~~A~~v~~~a 1565 (1758)
T KOG0994|consen 1544 AENLQSEAERARSRAEDVKGQA 1565 (1758)
T ss_pred HHHHHHHHHHHHhHHHHHHHHH
Confidence 3344444444444444444433
No 92
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=6.4e-07 Score=84.14 Aligned_cols=47 Identities=28% Similarity=0.600 Sum_probs=40.3
Q ss_pred cccccccccccCC---ceeccCcccccHhhHHHHhccCCCCCcCCCCCCC
Q 004587 688 ILKCSICLERPKE---VVITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 734 (743)
Q Consensus 688 ~~~C~iC~~~~~~---~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~ 734 (743)
-..|.||+..|.. .+++||.|.|-..|++.|+..-...||+||.++.
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 3799999998854 3688999999999999998755678999999874
No 93
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.21 E-value=0.019 Score=63.95 Aligned_cols=27 Identities=15% Similarity=0.115 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 228 QLEKSKSEVFKYQALFEKLQVEKDNLA 254 (743)
Q Consensus 228 ~l~~~~~~~~~~~~~~~~l~~e~~~l~ 254 (743)
.+..+...++.++..+..+...++.+.
T Consensus 106 ~~~~~~~~l~~~e~~~~~i~~~l~~l~ 132 (569)
T PRK04778 106 EINEIESLLDLIEEDIEQILEELQELL 132 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444
No 94
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=3.9e-07 Score=85.78 Aligned_cols=46 Identities=35% Similarity=0.670 Sum_probs=40.0
Q ss_pred ccccccccccCCceeccCcccccHhhHHHHhccCCCCCcCCCCCCCC
Q 004587 689 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSP 735 (743)
Q Consensus 689 ~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~ 735 (743)
+.|.||...|.+||++.|||.||..|.-..+. +...|++|+..+..
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~q-k~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQ-KGEKCYVCSQQTHG 287 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccc-cCCcceeccccccc
Confidence 56999999999999999999999999988776 34679999987643
No 95
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=6.3e-07 Score=87.53 Aligned_cols=47 Identities=28% Similarity=0.752 Sum_probs=41.1
Q ss_pred cccccccccccCCceeccCcccc-cHhhHHHHhccCCCCCcCCCCCCCC
Q 004587 688 ILKCSICLERPKEVVITKCYHLF-CNPCVQKVTESRHRKCPGCAASFSP 735 (743)
Q Consensus 688 ~~~C~iC~~~~~~~~~~~Cgh~f-C~~C~~~~~~~~~~~Cp~c~~~~~~ 735 (743)
-..|.||+...++.+++||.|+. |.+|.+.+.- -.+.||+||.+|..
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~-q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLRY-QTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHHH-hhcCCCccccchHh
Confidence 46999999999999999999998 9999998763 24569999999854
No 96
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.19 E-value=8.5e-07 Score=63.49 Aligned_cols=42 Identities=29% Similarity=0.555 Sum_probs=30.1
Q ss_pred cccccccccccCCcee-ccCcccccHhhHHHHhc-cCCCCCcCC
Q 004587 688 ILKCSICLERPKEVVI-TKCYHLFCNPCVQKVTE-SRHRKCPGC 729 (743)
Q Consensus 688 ~~~C~iC~~~~~~~~~-~~Cgh~fC~~C~~~~~~-~~~~~Cp~c 729 (743)
.+.|||....|.+||. ..|||+|....|..++. .+...||+-
T Consensus 11 ~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~ 54 (57)
T PF11789_consen 11 SLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVA 54 (57)
T ss_dssp -SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCC
T ss_pred ccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCC
Confidence 4899999999999986 59999999999999993 334569994
No 97
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=1.4e-07 Score=88.02 Aligned_cols=42 Identities=29% Similarity=0.888 Sum_probs=37.4
Q ss_pred ccccccccccCCceeccCcccc-cHhhHHHHhccCCCCCcCCCCCCCC
Q 004587 689 LKCSICLERPKEVVITKCYHLF-CNPCVQKVTESRHRKCPGCAASFSP 735 (743)
Q Consensus 689 ~~C~iC~~~~~~~~~~~Cgh~f-C~~C~~~~~~~~~~~Cp~c~~~~~~ 735 (743)
.-|.||++...+.++|+|||+. |..|-+++. .||+||..+..
T Consensus 301 ~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~-----eCPICRqyi~r 343 (350)
T KOG4275|consen 301 RLCAICMDAPRDCVFLECGHMVTCTKCGKRMN-----ECPICRQYIVR 343 (350)
T ss_pred HHHHHHhcCCcceEEeecCcEEeehhhccccc-----cCchHHHHHHH
Confidence 5899999999999999999999 999999764 59999987644
No 98
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=98.18 E-value=0.0046 Score=55.51 Aligned_cols=179 Identities=16% Similarity=0.134 Sum_probs=115.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004587 486 ALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLN 565 (743)
Q Consensus 486 ~l~~~~~e~~~l~~e~~~l~~~~~el~~~~~~l~~~~~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~el~~l~~~l~ 565 (743)
.+..++.....|..+...+...++-+...+..|..++..+...+..+. .+-..+..+..++..++.-+..+.....
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q----qal~~aK~l~eEledLk~~~~~lEE~~~ 84 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ----QALQKAKALEEELEDLKTLAKSLEEENR 84 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555555555566666666666666665555553 3333445666677777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 566 FFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKER 645 (743)
Q Consensus 566 ~~~~~~~~le~~~~~l~~~l~~l~~el~~~~~~l~~~~~~~~e~~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~~l~~~~ 645 (743)
.+......++.....+...+..+..+...+..+.+.+..+..++......+..++-..+.-+......+.+....++.+.
T Consensus 85 ~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~ 164 (193)
T PF14662_consen 85 SLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELK 164 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 77777777777777777888888888777777778788777777777777777777766666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 004587 646 FAKKRLEEDLEMGRRKVLRLQAQ 668 (743)
Q Consensus 646 ~~~~~~~~~~~~l~~~~~~l~~~ 668 (743)
..+..+..-...++.++..|...
T Consensus 165 ~~ieEy~~~teeLR~e~s~LEeq 187 (193)
T PF14662_consen 165 KTIEEYRSITEELRLEKSRLEEQ 187 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555566665555543
No 99
>PF04641 Rtf2: Rtf2 RING-finger
Probab=98.17 E-value=1e-06 Score=86.74 Aligned_cols=55 Identities=18% Similarity=0.518 Sum_probs=45.6
Q ss_pred hccccccccccccCCc----eeccCcccccHhhHHHHhccCCCCCcCCCCCCCCCCCcCcC
Q 004587 686 REILKCSICLERPKEV----VITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 742 (743)
Q Consensus 686 ~~~~~C~iC~~~~~~~----~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~ 742 (743)
...+.|||++..|... ++.||||+||..|+..+- ....||+|+.+|...||.++.
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~Ln 169 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIPLN 169 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEEec
Confidence 4468999999999652 456999999999999984 345699999999999987763
No 100
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.16 E-value=0.00076 Score=63.81 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=10.4
Q ss_pred CCCCCcCCCCCCCC
Q 004587 722 RHRKCPGCAASFSP 735 (743)
Q Consensus 722 ~~~~Cp~c~~~~~~ 735 (743)
...+||.||..+..
T Consensus 220 ~iv~CP~CgRILy~ 233 (239)
T COG1579 220 EIVFCPYCGRILYY 233 (239)
T ss_pred CCccCCccchHHHh
Confidence 45679999987643
No 101
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.14 E-value=0.026 Score=62.64 Aligned_cols=65 Identities=14% Similarity=0.168 Sum_probs=43.3
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhhhHHHH
Q 004587 314 IIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQV 378 (743)
Q Consensus 314 ~~~e~~~~~~~~~~e~~~l~~~l~~~~~~~~el~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~~~ 378 (743)
..++++.+--++++.+..|+..-..|.+...++..+..+..-++..+.....-..-...++..+.
T Consensus 98 dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEAL 162 (717)
T PF09730_consen 98 DYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEAL 162 (717)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666667777777777766777788888888888888888777766553333334444433
No 102
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.11 E-value=0.029 Score=62.18 Aligned_cols=70 Identities=9% Similarity=0.075 Sum_probs=29.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 520 QQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLA 589 (743)
Q Consensus 520 ~~~~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~el~~l~~~l~~~~~~~~~le~~~~~l~~~l~~l~ 589 (743)
.++..+......+......-...|..+......+...+..+......+...+..+...-......+..+.
T Consensus 351 ~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~ 420 (560)
T PF06160_consen 351 KQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLK 420 (560)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333444444444444444444444444444444444433333333333333
No 103
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.10 E-value=1.6e-05 Score=91.01 Aligned_cols=36 Identities=25% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHh
Q 004587 174 VHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNT 209 (743)
Q Consensus 174 ~l~~l~~~~~~~~~e~~~l~~e~~~l~~el~~l~~~ 209 (743)
.+..++..+......+..++.++..+...++.+...
T Consensus 172 ~~~~l~~~~~~~e~~~~~l~~e~~~l~~~le~~~~~ 207 (722)
T PF05557_consen 172 ELSELERQAENAESQIQSLESELEELKEQLEELQSE 207 (722)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444333333444444444444444444444433
No 104
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.5e-06 Score=86.02 Aligned_cols=46 Identities=28% Similarity=0.575 Sum_probs=39.5
Q ss_pred ccccccccccCCc---eeccCcccccHhhHHHHhccCCCCCcCCCCCCC
Q 004587 689 LKCSICLERPKEV---VITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 734 (743)
Q Consensus 689 ~~C~iC~~~~~~~---~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~ 734 (743)
..|.||++.|..- .+|||+|.|-..||+.|+....+.||+|...+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 4999999999763 689999999999999999876566999987653
No 105
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.06 E-value=8.4e-07 Score=85.41 Aligned_cols=54 Identities=28% Similarity=0.686 Sum_probs=45.3
Q ss_pred HHhhccccccccccccCCce-eccCcccccHhhHHHHhccCCCCCcCCCCCCCCCC
Q 004587 683 REYREILKCSICLERPKEVV-ITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPND 737 (743)
Q Consensus 683 ~~l~~~~~C~iC~~~~~~~~-~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~~ 737 (743)
..+....+|.+|...|.++. +.-|-|+||.+||-.++.. ...||+|+..+....
T Consensus 10 ~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 10 TELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTH 64 (331)
T ss_pred hhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCcc
Confidence 34455689999999999885 5679999999999999986 677999998887754
No 106
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.06 E-value=0.011 Score=66.41 Aligned_cols=74 Identities=15% Similarity=0.122 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 004587 598 NLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVLRLQAQTEG 671 (743)
Q Consensus 598 ~l~~~~~~~~e~~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 671 (743)
+.+.+...+..++.....|...+..=.+..-++-..+.+..++++.....+..-+.+|..|+.++..+-+.+..
T Consensus 588 ~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~p~ 661 (697)
T PF09726_consen 588 DTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVMPS 661 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 34444455555555556666666555555556666777777777777777777788888888888877766653
No 107
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=98.05 E-value=1.3e-06 Score=85.03 Aligned_cols=49 Identities=33% Similarity=0.749 Sum_probs=42.7
Q ss_pred ccccccccccCCceeccCcccccHhhHHHHhccC-CCCCcCCCCCCCCCC
Q 004587 689 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESR-HRKCPGCAASFSPND 737 (743)
Q Consensus 689 ~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~~-~~~Cp~c~~~~~~~~ 737 (743)
.-|.||-+.-++..|-||||..|..|+..|..+. ...||+||..+....
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 4799999999999999999999999999998654 567999998776544
No 108
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.04 E-value=0.047 Score=62.06 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhh
Q 004587 172 ESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTL 210 (743)
Q Consensus 172 ~~~l~~l~~~~~~~~~e~~~l~~e~~~l~~el~~l~~~l 210 (743)
......++..+......+..++.....+...+.++....
T Consensus 350 ~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 350 RREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555555555555555544
No 109
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.03 E-value=0.0068 Score=68.27 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHhhH
Q 004587 419 RDLEYKAWAHVHSLKSSLDEQSL 441 (743)
Q Consensus 419 ~~~~~~~~~~~~~l~~~l~~~~~ 441 (743)
......++..+..+...+..+..
T Consensus 173 k~~~~e~~~~i~~l~~~i~~l~~ 195 (562)
T PHA02562 173 KDKIRELNQQIQTLDMKIDHIQQ 195 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555444433
No 110
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=1.6e-06 Score=95.25 Aligned_cols=48 Identities=27% Similarity=0.574 Sum_probs=41.4
Q ss_pred cccccccccccCC-----ceeccCcccccHhhHHHHhccCCCCCcCCCCCCCCC
Q 004587 688 ILKCSICLERPKE-----VVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPN 736 (743)
Q Consensus 688 ~~~C~iC~~~~~~-----~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~ 736 (743)
...|+||.+.+.. |..++|||+||..|+..|+.. ...||+||..+...
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~~~~ 343 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVLYDY 343 (543)
T ss_pred CCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhhhcc
Confidence 4799999999887 789999999999999999984 67799999855443
No 111
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.99 E-value=0.047 Score=60.39 Aligned_cols=106 Identities=15% Similarity=0.142 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 507 SYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQ 586 (743)
Q Consensus 507 ~~~el~~~~~~l~~~~~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~el~~l~~~l~~~~~~~~~le~~~~~l~~~l~ 586 (743)
.+...-.++..|..++.++++....+.++...+...+..-.--+..+...+..+...+..++..+..-...+..+..+-.
T Consensus 154 t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~d 233 (617)
T PF15070_consen 154 TASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRD 233 (617)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34445677788888888888888888888877776666555555666666666666666666655555555555555544
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHH
Q 004587 587 RLAEDRSQNSANLENTQKRLSDVRKS 612 (743)
Q Consensus 587 ~l~~el~~~~~~l~~~~~~~~e~~~~ 612 (743)
.+...+..+...+..+......+..+
T Consensus 234 q~~~~Lqqy~a~~q~l~~e~e~L~~q 259 (617)
T PF15070_consen 234 QYLGHLQQYVAAYQQLASEKEELHKQ 259 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555544444444444444433
No 112
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=2.5e-06 Score=87.08 Aligned_cols=49 Identities=27% Similarity=0.705 Sum_probs=43.1
Q ss_pred hccccccccccccCCceeccCcccccHhhHHHHhccCCCCCcCCCCCCCC
Q 004587 686 REILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSP 735 (743)
Q Consensus 686 ~~~~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~ 735 (743)
...+.|-||...+-.|+.+||||+||..|+.+.+. ....||.|+.+|..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCccccccccc
Confidence 45589999999999999999999999999999776 45679999998864
No 113
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.99 E-value=2.4e-06 Score=79.86 Aligned_cols=43 Identities=33% Similarity=0.770 Sum_probs=38.4
Q ss_pred ccccccccccCCceec-cCcccccHhhHHHHhccCCCCCcCCCC
Q 004587 689 LKCSICLERPKEVVIT-KCYHLFCNPCVQKVTESRHRKCPGCAA 731 (743)
Q Consensus 689 ~~C~iC~~~~~~~~~~-~Cgh~fC~~C~~~~~~~~~~~Cp~c~~ 731 (743)
+.||.|+-..++|+.+ -|||+||..||..-+-.....||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 7999999999999988 489999999999887666788999976
No 114
>PRK11637 AmiB activator; Provisional
Probab=97.94 E-value=0.026 Score=60.67 Aligned_cols=16 Identities=13% Similarity=0.042 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 004587 418 ARDLEYKAWAHVHSLK 433 (743)
Q Consensus 418 l~~~~~~~~~~~~~l~ 433 (743)
+...+..++.++..+.
T Consensus 45 ~~~~l~~l~~qi~~~~ 60 (428)
T PRK11637 45 NRDQLKSIQQDIAAKE 60 (428)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 115
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=6.4e-06 Score=75.10 Aligned_cols=54 Identities=15% Similarity=0.284 Sum_probs=45.7
Q ss_pred ccccccccccccCCc----eeccCcccccHhhHHHHhccCCCCCcCCCCCCCCCCCcCc
Q 004587 687 EILKCSICLERPKEV----VITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPV 741 (743)
Q Consensus 687 ~~~~C~iC~~~~~~~----~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~ 741 (743)
....||||....++. +..||||+||..|+..++.. ...||+|+.++...||..+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceEee
Confidence 458999999998874 45599999999999999884 5669999999999987653
No 116
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.87 E-value=0.023 Score=63.98 Aligned_cols=27 Identities=0% Similarity=-0.037 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhhH
Q 004587 415 VLAARDLEYKAWAHVHSLKSSLDEQSL 441 (743)
Q Consensus 415 ~~~l~~~~~~~~~~~~~l~~~l~~~~~ 441 (743)
+..+......+..++..+...+..+..
T Consensus 176 ~~e~~~~i~~l~~~i~~l~~~i~~~~~ 202 (562)
T PHA02562 176 IRELNQQIQTLDMKIDHIQQQIKTYNK 202 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556667777777777777776655433
No 117
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.84 E-value=0.087 Score=58.62 Aligned_cols=29 Identities=10% Similarity=0.307 Sum_probs=19.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004587 277 TDSKIADLGIEIQKQIDEKNRIEMRLEEA 305 (743)
Q Consensus 277 ~~~~i~~l~~~l~~~~~~~~~L~~~l~~~ 305 (743)
.+.++++.=..|+.-..++..|..+|..+
T Consensus 154 ae~qleEALesl~~EReqk~~LrkEL~~~ 182 (717)
T PF09730_consen 154 AEKQLEEALESLKSEREQKNALRKELDQH 182 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666666667777777777764
No 118
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.79 E-value=3.8e-06 Score=88.96 Aligned_cols=50 Identities=24% Similarity=0.541 Sum_probs=39.7
Q ss_pred cccccccccCCce---eccCcccccHhhHHHHhccCCCCCcCCCCCCCCCCCcC
Q 004587 690 KCSICLERPKEVV---ITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKP 740 (743)
Q Consensus 690 ~C~iC~~~~~~~~---~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~ 740 (743)
.||+|...|.+.. -.+|+|.||..|+..|-+.- ..||+||..|..-+|..
T Consensus 125 ~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a-qTCPiDR~EF~~v~V~e 177 (1134)
T KOG0825|consen 125 QCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA-QTCPVDRGEFGEVKVLE 177 (1134)
T ss_pred hhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc-ccCchhhhhhheeeeec
Confidence 7888887777753 24899999999999998753 45999999998866543
No 119
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=97.78 E-value=4.8e-06 Score=75.42 Aligned_cols=50 Identities=28% Similarity=0.774 Sum_probs=39.8
Q ss_pred cccccccc-ccCCc--e--ecc-CcccccHhhHHHHhccCCCCCc--CCCCCCCCCCC
Q 004587 689 LKCSICLE-RPKEV--V--ITK-CYHLFCNPCVQKVTESRHRKCP--GCAASFSPNDV 738 (743)
Q Consensus 689 ~~C~iC~~-~~~~~--~--~~~-Cgh~fC~~C~~~~~~~~~~~Cp--~c~~~~~~~~~ 738 (743)
-.||+|.. +|-+| + +-| |.|.+|.+|+++++..+...|| .|++.+....+
T Consensus 11 ~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~kf 68 (314)
T COG5220 11 RRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKIKF 68 (314)
T ss_pred ccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHhcc
Confidence 58999965 56666 2 336 9999999999999998888999 89987665443
No 120
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=5.7e-06 Score=81.02 Aligned_cols=44 Identities=30% Similarity=0.716 Sum_probs=34.7
Q ss_pred cccccccccccCCceeccCcccccHhhHHHHhccCCCCCcCCCCCCCC
Q 004587 688 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSP 735 (743)
Q Consensus 688 ~~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~ 735 (743)
...|.||...+.+.+++||||+.| |..-... .+.||+||..+..
T Consensus 305 p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 305 PDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRIRL 348 (355)
T ss_pred CCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHHHH
Confidence 468999999999999999999986 5444333 2459999988754
No 121
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.76 E-value=2.1e-05 Score=60.30 Aligned_cols=47 Identities=28% Similarity=0.540 Sum_probs=35.2
Q ss_pred ccccccccccC-----------C-c-eeccCcccccHhhHHHHhccC--CCCCcCCCCCCCC
Q 004587 689 LKCSICLERPK-----------E-V-VITKCYHLFCNPCVQKVTESR--HRKCPGCAASFSP 735 (743)
Q Consensus 689 ~~C~iC~~~~~-----------~-~-~~~~Cgh~fC~~C~~~~~~~~--~~~Cp~c~~~~~~ 735 (743)
-.|+||...|. + | +.-.|||.|-..||..|+.+. +..||+||.+|..
T Consensus 22 d~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 22 DVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 35666666553 2 3 344899999999999999863 4679999998754
No 122
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.73 E-value=9.3e-06 Score=82.25 Aligned_cols=52 Identities=23% Similarity=0.701 Sum_probs=43.4
Q ss_pred hccccccccccccCCceeccCcccccHhhHHHHhc----cCCCCCcCCCCCCCCCC
Q 004587 686 REILKCSICLERPKEVVITKCYHLFCNPCVQKVTE----SRHRKCPGCAASFSPND 737 (743)
Q Consensus 686 ~~~~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~----~~~~~Cp~c~~~~~~~~ 737 (743)
+....|.+|+++-.+++..+|.|+||.-|+..++. +.+..||+|..+++-.+
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 34579999999999999999999999999988764 33568999998876543
No 123
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.72 E-value=0.062 Score=53.32 Aligned_cols=167 Identities=14% Similarity=0.148 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004587 489 SKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFD 568 (743)
Q Consensus 489 ~~~~e~~~l~~e~~~l~~~~~el~~~~~~l~~~~~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~el~~l~~~l~~~~ 568 (743)
....+.+....+.....+.+...+..+.++..+...+..++..+..+...+.....++..+.+.|..-..++..+.-.++
T Consensus 113 ~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~ 192 (499)
T COG4372 113 KARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLK 192 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444555555555555555555555555555555555555555544444444444443
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 569 MKAARIENQLR---FCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKER 645 (743)
Q Consensus 569 ~~~~~le~~~~---~l~~~l~~l~~el~~~~~~l~~~~~~~~e~~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~~l~~~~ 645 (743)
..-..++.+-+ .-...+.....++............++......++.....+..-...+.+-..++..++....-+.
T Consensus 193 ~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~le 272 (499)
T COG4372 193 LRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLE 272 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333322 233344445555555555555555555555555555555555554555555555555555555444
Q ss_pred HHHHHHHHHH
Q 004587 646 FAKKRLEEDL 655 (743)
Q Consensus 646 ~~~~~~~~~~ 655 (743)
.+...++.-+
T Consensus 273 qeva~le~yy 282 (499)
T COG4372 273 QEVAQLEAYY 282 (499)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 124
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.71 E-value=7.5e-06 Score=93.54 Aligned_cols=28 Identities=14% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHhHhhhHHHHHHHHHHHHHhhh
Q 004587 184 HQLLELKGLHDGRIKVLQQLYNLQNTLK 211 (743)
Q Consensus 184 ~~~~e~~~l~~e~~~l~~el~~l~~~l~ 211 (743)
.....+..+..+...+..+...+...+.
T Consensus 197 el~~~i~~L~~e~~~L~~e~~~l~~~~~ 224 (713)
T PF05622_consen 197 ELEKQISDLQEEKESLQSENEELQERLS 224 (713)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHhHHHhhhhhhhhhcccC
Confidence 3444445555555555555544444433
No 125
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.68 E-value=1.4e-05 Score=79.82 Aligned_cols=47 Identities=32% Similarity=0.661 Sum_probs=38.3
Q ss_pred hhccccccccccccCCc----eeccCcccccHhhHHHHhccCCCCCcCCCCCCC
Q 004587 685 YREILKCSICLERPKEV----VITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 734 (743)
Q Consensus 685 l~~~~~C~iC~~~~~~~----~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~ 734 (743)
+...++||||++++... +.+.|.|+|=..|+..|+. ..||+||..-.
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence 34568999999998764 3568999999999999987 45999987654
No 126
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=8.9e-06 Score=77.90 Aligned_cols=54 Identities=19% Similarity=0.463 Sum_probs=45.3
Q ss_pred cccccccccccCCceec-cCcccccHhhHHHHhccCCCCCcCCCCCCCCCCCcCcC
Q 004587 688 ILKCSICLERPKEVVIT-KCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 742 (743)
Q Consensus 688 ~~~C~iC~~~~~~~~~~-~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~ 742 (743)
...||||.....+|.++ ..|-+||+.|+..++. .+..||+.+.|....++.++|
T Consensus 300 ~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 300 REVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred cccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcchHHHHHHHh
Confidence 46999999988887554 5699999999999998 467799999998877776665
No 127
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.65 E-value=1.1e-05 Score=92.33 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHHHHH
Q 004587 71 LQSEVKNLRLALMDL 85 (743)
Q Consensus 71 l~~~~~~~~~~l~~l 85 (743)
+.-.+.++..-+..+
T Consensus 65 w~lr~~NLk~l~~~i 79 (713)
T PF05622_consen 65 WRLRVSNLKKLLRNI 79 (713)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 128
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.62 E-value=2.4e-05 Score=81.68 Aligned_cols=54 Identities=31% Similarity=0.709 Sum_probs=45.6
Q ss_pred hhccccccccccccCCcee-ccCcccccHhhHHHHhccCCCCCcCCCCCCCCCCCc
Q 004587 685 YREILKCSICLERPKEVVI-TKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVK 739 (743)
Q Consensus 685 l~~~~~C~iC~~~~~~~~~-~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~~~~ 739 (743)
+...+.|++|+..+.+|+. +.|||.||..|+..|... +..||.|+.........
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEEL 72 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhcc
Confidence 3445899999999999998 599999999999999886 77899998776655433
No 129
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.59 E-value=0.19 Score=55.48 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004587 525 RDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFD 568 (743)
Q Consensus 525 ~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~el~~l~~~l~~~~ 568 (743)
+-.+|.++...+.+-+..+.....+...++.+|..+...++...
T Consensus 489 Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF 532 (594)
T PF05667_consen 489 YTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTF 532 (594)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34445555555555555555555555555555555555554433
No 130
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.59 E-value=0.19 Score=56.66 Aligned_cols=61 Identities=15% Similarity=0.113 Sum_probs=41.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004587 610 RKSSVQVRGSLEESQSKVYKSRL-------TLMELQIELVKERFAKKRLEEDLEMGRRKVLRLQAQTE 670 (743)
Q Consensus 610 ~~~~~~l~~~l~~l~~~~~~~~~-------~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 670 (743)
..+.+.|...+..++.....++. ---++=..|-+.+.+++.++..+..-.++|..|+.+..
T Consensus 586 ~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~ 653 (697)
T PF09726_consen 586 EKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIA 653 (697)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555554444443 33466677888888888888888888888988887664
No 131
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.56 E-value=0.058 Score=48.70 Aligned_cols=40 Identities=23% Similarity=0.245 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 004587 498 LSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGV 537 (743)
Q Consensus 498 ~~e~~~l~~~~~el~~~~~~l~~~~~~~~~~~~~l~~e~~ 537 (743)
..+++.+......++.++..+..+...++.+...|..++.
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~ 105 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIE 105 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455444445555555554444444444444444444
No 132
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.55 E-value=0.097 Score=51.05 Aligned_cols=83 Identities=11% Similarity=0.134 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 576 NQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDL 655 (743)
Q Consensus 576 ~~~~~l~~~l~~l~~el~~~~~~l~~~~~~~~e~~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 655 (743)
.++..+......+...+..+..+...+...|..+-...+.++...+.+...+.+....+.++...+......+..+...+
T Consensus 165 aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~i 244 (294)
T COG1340 165 AEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKI 244 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444444444444444444444444444444444444444444444444444433
Q ss_pred HHH
Q 004587 656 EMG 658 (743)
Q Consensus 656 ~~l 658 (743)
..+
T Consensus 245 k~l 247 (294)
T COG1340 245 KAL 247 (294)
T ss_pred HHH
Confidence 333
No 133
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=4.5e-05 Score=75.81 Aligned_cols=60 Identities=18% Similarity=0.520 Sum_probs=50.9
Q ss_pred Hhhcccccccccccc---CCceeccCcccccHhhHHHHhccCC--CCCcCCCCCCCCCCCcCcCC
Q 004587 684 EYREILKCSICLERP---KEVVITKCYHLFCNPCVQKVTESRH--RKCPGCAASFSPNDVKPVYI 743 (743)
Q Consensus 684 ~l~~~~~C~iC~~~~---~~~~~~~Cgh~fC~~C~~~~~~~~~--~~Cp~c~~~~~~~~~~~~~~ 743 (743)
++=+.+.|||=.+-- ..|+.+.|||+.|..-+.++..++. .+||.|.......+.+++||
T Consensus 330 ~fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql~F 394 (394)
T KOG2817|consen 330 HFHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLASDTKQLYF 394 (394)
T ss_pred cccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccCHHhcccccC
Confidence 345578999987644 4489999999999999999998776 78999999998999999987
No 134
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.54 E-value=0.19 Score=54.06 Aligned_cols=20 Identities=10% Similarity=0.208 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004587 632 LTLMELQIELVKERFAKKRL 651 (743)
Q Consensus 632 ~~l~~~~~~l~~~~~~~~~~ 651 (743)
..+.++.+-++.-...++++
T Consensus 700 hKIAeMVALMEKHK~qYDki 719 (786)
T PF05483_consen 700 HKIAEMVALMEKHKHQYDKI 719 (786)
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 34555555555554444444
No 135
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.52 E-value=0.064 Score=48.17 Aligned_cols=95 Identities=15% Similarity=0.194 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 004587 550 KHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYK 629 (743)
Q Consensus 550 ~~~l~~el~~l~~~l~~~~~~~~~le~~~~~l~~~l~~l~~el~~~~~~l~~~~~~~~e~~~~~~~l~~~l~~l~~~~~~ 629 (743)
+.-+...+.......+.-...+..+...++.+...+..+...-..+....+.+...+..+...+......-.-....+..
T Consensus 90 L~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVak 169 (205)
T KOG1003|consen 90 LVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAK 169 (205)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444444444444444444444444433333333344444
Q ss_pred HHHHHHHHHHHHHHH
Q 004587 630 SRLTLMELQIELVKE 644 (743)
Q Consensus 630 ~~~~l~~~~~~l~~~ 644 (743)
+...+.++...+...
T Consensus 170 Leke~DdlE~kl~~~ 184 (205)
T KOG1003|consen 170 LEKERDDLEEKLEEA 184 (205)
T ss_pred HcccHHHHHHhhHHH
Confidence 444444444333333
No 136
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=4.9e-05 Score=76.64 Aligned_cols=49 Identities=24% Similarity=0.656 Sum_probs=39.6
Q ss_pred hccccccccccccC-----------------CceeccCcccccHhhHHHHhccCCCCCcCCCCCCC
Q 004587 686 REILKCSICLERPK-----------------EVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 734 (743)
Q Consensus 686 ~~~~~C~iC~~~~~-----------------~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~ 734 (743)
....-|+||+.... +.+++||-|+|-..|+.+|..+....||+||.++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 44579999998641 12466999999999999999876668999999874
No 137
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.44 E-value=0.14 Score=50.06 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004587 563 SLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQI 639 (743)
Q Consensus 563 ~l~~~~~~~~~le~~~~~l~~~l~~l~~el~~~~~~l~~~~~~~~e~~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~ 639 (743)
+++.+......+...+..+..+....-.++..+-...+.++.+...+...+-.+...++.+...+..++..+.++..
T Consensus 166 ei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k 242 (294)
T COG1340 166 EIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEK 242 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444444444444333333333333333333333333333333
No 138
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=7.2e-05 Score=74.93 Aligned_cols=48 Identities=31% Similarity=0.727 Sum_probs=38.1
Q ss_pred cccccccccccCCce-----e---ccCcccccHhhHHHHhccCC------CCCcCCCCCCCC
Q 004587 688 ILKCSICLERPKEVV-----I---TKCYHLFCNPCVQKVTESRH------RKCPGCAASFSP 735 (743)
Q Consensus 688 ~~~C~iC~~~~~~~~-----~---~~Cgh~fC~~C~~~~~~~~~------~~Cp~c~~~~~~ 735 (743)
...|.||++....+. + .+|-|.||..|+..|-..+. +.||+||.+...
T Consensus 161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 161 EKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 479999999876654 3 46999999999999974433 679999987543
No 139
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.36 E-value=0.36 Score=53.29 Aligned_cols=92 Identities=20% Similarity=0.281 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 004587 459 LAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVR 538 (743)
Q Consensus 459 l~~~e~~i~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~el~~~~~~l~~~~~~~~~~~~~l~~e~~~ 538 (743)
++..+..+..|+.-++.....+..|..++......+ ..++..+.........+......++..++..+..+..+...
T Consensus 389 L~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL---~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~ 465 (594)
T PF05667_consen 389 LPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPL---IEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQ 465 (594)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666667777666777766666655433 33555555555544555555556666666666666666655
Q ss_pred HHHHHHHHHHhHHHH
Q 004587 539 ARQLQDALLMDKHMM 553 (743)
Q Consensus 539 ~~~~~~~l~~e~~~l 553 (743)
....+..|..+...+
T Consensus 466 Kee~~~qL~~e~e~~ 480 (594)
T PF05667_consen 466 KEELYKQLVKELEKL 480 (594)
T ss_pred HHHHHHHHHHHHHhC
Confidence 555555554444443
No 140
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=7.9e-05 Score=71.79 Aligned_cols=45 Identities=24% Similarity=0.594 Sum_probs=39.2
Q ss_pred ccccccccccCCceeccCcccccHhhHHHHhccCCCCCcCCCCCCC
Q 004587 689 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 734 (743)
Q Consensus 689 ~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~ 734 (743)
..||||....-+.|+.||||.-|+.||...+.+. ..|-+|...+.
T Consensus 423 ~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~-k~CFfCktTv~ 467 (489)
T KOG4692|consen 423 NLCPICYAGPINAVFAPCSHRSCYGCITQHLMNC-KRCFFCKTTVI 467 (489)
T ss_pred ccCcceecccchhhccCCCCchHHHHHHHHHhcC-CeeeEecceee
Confidence 5899999999999999999999999999998863 44999987654
No 141
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=97.34 E-value=0.00012 Score=49.38 Aligned_cols=43 Identities=28% Similarity=0.773 Sum_probs=22.8
Q ss_pred ccccccccCC--ceec--cCcccccHhhHHHHhccCCCCCcCCCCCC
Q 004587 691 CSICLERPKE--VVIT--KCYHLFCNPCVQKVTESRHRKCPGCAASF 733 (743)
Q Consensus 691 C~iC~~~~~~--~~~~--~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~ 733 (743)
||+|...+.. .-++ +||+.+|..|..+........||.||.++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7889887733 2344 58999999999999876677899999875
No 142
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.33 E-value=0.41 Score=53.14 Aligned_cols=40 Identities=10% Similarity=0.057 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhhhh
Q 004587 173 SVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKS 212 (743)
Q Consensus 173 ~~l~~l~~~~~~~~~e~~~l~~e~~~l~~el~~l~~~l~~ 212 (743)
..+..+...+.....+.......+..|...|..++..+..
T Consensus 29 qr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~ 68 (617)
T PF15070_consen 29 QRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAE 68 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3333444444444444455555555666666666555554
No 143
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=97.20 E-value=0.0017 Score=53.91 Aligned_cols=50 Identities=30% Similarity=0.633 Sum_probs=42.6
Q ss_pred cccccccccccCCceecc----CcccccHhhHHHHhccC--CCCCcCCCCCCCCCC
Q 004587 688 ILKCSICLERPKEVVITK----CYHLFCNPCVQKVTESR--HRKCPGCAASFSPND 737 (743)
Q Consensus 688 ~~~C~iC~~~~~~~~~~~----Cgh~fC~~C~~~~~~~~--~~~Cp~c~~~~~~~~ 737 (743)
.-.|-||.+...+..+++ ||-..|..|...+|+.- ++.||+|.+.|..+.
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 469999999999887763 99999999999999853 578999999997653
No 144
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.19 E-value=0.47 Score=51.01 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=10.0
Q ss_pred HHHHhHHhHHHHHHHHHHHHHH
Q 004587 348 ILRADVLSLTNVLERKVKECET 369 (743)
Q Consensus 348 ~l~~~~~~l~~~l~~~~~~~~~ 369 (743)
.++.++.++...+......+..
T Consensus 609 ~~R~Ei~~LqrRlqaaE~R~ee 630 (961)
T KOG4673|consen 609 MFRGEIEDLQRRLQAAERRCEE 630 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444443333
No 145
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.06 E-value=0.00011 Score=81.41 Aligned_cols=48 Identities=29% Similarity=0.702 Sum_probs=40.8
Q ss_pred ccccccccccCCceeccCcccccHhhHHHHhccCCC-CCcCCCCCCCCCC
Q 004587 689 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHR-KCPGCAASFSPND 737 (743)
Q Consensus 689 ~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~~~~-~Cp~c~~~~~~~~ 737 (743)
..|++|.+ ...+++++|||.||..|+...+..... .||.|+..+...+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 79999999 888899999999999999999876543 5999997765544
No 146
>PRK09039 hypothetical protein; Validated
Probab=97.05 E-value=0.27 Score=50.70 Aligned_cols=11 Identities=18% Similarity=-0.200 Sum_probs=6.7
Q ss_pred eeccCcccccH
Q 004587 702 VITKCYHLFCN 712 (743)
Q Consensus 702 ~~~~Cgh~fC~ 712 (743)
++.--||+-+.
T Consensus 264 ~I~I~GHTD~~ 274 (343)
T PRK09039 264 VLRVDGHTDNV 274 (343)
T ss_pred eEEEEEecCCC
Confidence 34457887664
No 147
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.04 E-value=0.00039 Score=51.41 Aligned_cols=33 Identities=21% Similarity=0.523 Sum_probs=28.0
Q ss_pred ccCcccccHhhHHHHhccCCCCCcCCCCCCCCCC
Q 004587 704 TKCYHLFCNPCVQKVTESRHRKCPGCAASFSPND 737 (743)
Q Consensus 704 ~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~~ 737 (743)
-.|.|.|=..||.+|+.++ ..||.|+.+|...+
T Consensus 52 G~CnHaFH~HCI~rWL~Tk-~~CPld~q~w~~~~ 84 (88)
T COG5194 52 GVCNHAFHDHCIYRWLDTK-GVCPLDRQTWVLAD 84 (88)
T ss_pred EecchHHHHHHHHHHHhhC-CCCCCCCceeEEec
Confidence 3799999999999999984 55999999986544
No 148
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.00045 Score=68.79 Aligned_cols=47 Identities=26% Similarity=0.679 Sum_probs=36.3
Q ss_pred hccccccccccccCCc---eeccCcccccHhhHHHHhcc-------CCCCCcCCCCC
Q 004587 686 REILKCSICLERPKEV---VITKCYHLFCNPCVQKVTES-------RHRKCPGCAAS 732 (743)
Q Consensus 686 ~~~~~C~iC~~~~~~~---~~~~Cgh~fC~~C~~~~~~~-------~~~~Cp~c~~~ 732 (743)
...+.|.||+..+... +.+||+|+||..|...++.. ...+||-|+.+
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 4458999999988763 57899999999999999764 12468876543
No 149
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=97.00 E-value=0.46 Score=47.49 Aligned_cols=112 Identities=14% Similarity=0.142 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 514 QNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRS 593 (743)
Q Consensus 514 ~~~~l~~~~~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~el~~l~~~l~~~~~~~~~le~~~~~l~~~l~~l~~el~ 593 (743)
....+..-+.+..+.+..|..++..+.+.+..+++++.-++..+.............. .-.....+..+++.+...+.
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~--~~~ere~lV~qLEk~~~q~~ 143 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARH--FPHEREDLVEQLEKLREQIE 143 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccc--cchHHHHHHHHHHHHHHHHH
Confidence 3445555566666667777777777777777777777777766665433222111100 00223333344444444444
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 004587 594 QNSANLENTQKRLSDVRKSSVQVRGSLEESQSKV 627 (743)
Q Consensus 594 ~~~~~l~~~~~~~~e~~~~~~~l~~~l~~l~~~~ 627 (743)
.+...+..+-.+..++..+.+.++.....+..++
T Consensus 144 qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~EL 177 (319)
T PF09789_consen 144 QLERDLQSLLDEKEELVTERDAYKCKAHRLNHEL 177 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444443
No 150
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.82 Score=50.43 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=8.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHHH
Q 004587 368 ETLLASSADQVAEIHKLQAMVQ 389 (743)
Q Consensus 368 ~~l~~~~~~~~~~~~~l~~~i~ 389 (743)
+.++.++....+....+..++.
T Consensus 688 eeL~~~vq~~~s~hsql~~q~~ 709 (970)
T KOG0946|consen 688 EELEEEVQDFISEHSQLKDQLD 709 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 151
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.98 E-value=0.74 Score=49.58 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 467 ADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQ 514 (743)
Q Consensus 467 ~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~el~~~ 514 (743)
.-++.+-..+...+..-..+......+...+..+++.+...+..+..+
T Consensus 707 sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e 754 (961)
T KOG4673|consen 707 SLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVE 754 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444455555555555554444443333
No 152
>PRK09039 hypothetical protein; Validated
Probab=96.96 E-value=0.38 Score=49.62 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 462 AEAEIADMRQKLEAFKRDMVSLSDAL 487 (743)
Q Consensus 462 ~e~~i~~l~~~l~~~~~~~~~l~~~l 487 (743)
+..++.....+++.+..++..+...+
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~e~L 69 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELADLL 69 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44444455555554444444433333
No 153
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.9 Score=50.16 Aligned_cols=28 Identities=11% Similarity=-0.001 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004587 639 IELVKERFAKKRLEEDLEMGRRKVLRLQ 666 (743)
Q Consensus 639 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~ 666 (743)
.+-++..-......+.+..+++.+..|.
T Consensus 911 qeqee~~v~~~~~~~~i~alk~~l~dL~ 938 (970)
T KOG0946|consen 911 QEQEELLVLLADQKEKIQALKEALEDLN 938 (970)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHhC
Confidence 3333333334444444444444444443
No 154
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.00037 Score=66.13 Aligned_cols=35 Identities=26% Similarity=0.771 Sum_probs=31.8
Q ss_pred cCcccccHhhHHHHhccCCCCCcCCCCCCCCCCCc
Q 004587 705 KCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVK 739 (743)
Q Consensus 705 ~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~~~~ 739 (743)
+|||..|.+|+++++..+...||.|+.++..+.++
T Consensus 22 ~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr 56 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFR 56 (300)
T ss_pred cccchHHHHHHHHHHhcCCCCCCcccchhhhcccc
Confidence 99999999999999998888999999998777655
No 155
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.91 E-value=0.00035 Score=67.09 Aligned_cols=52 Identities=21% Similarity=0.609 Sum_probs=40.4
Q ss_pred cccccccccCC--ceec--cCcccccHhhHHHHhccCCCCCcCCCCCCCCCCCcCc
Q 004587 690 KCSICLERPKE--VVIT--KCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPV 741 (743)
Q Consensus 690 ~C~iC~~~~~~--~~~~--~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~ 741 (743)
.||.|.+++.- .-++ +||..+|..|...+-..-+..||.||..+....|+-+
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv~~~ 71 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENVRYV 71 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccceeEE
Confidence 49999998643 3344 6888889999988766556679999999988887644
No 156
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.88 E-value=0.32 Score=43.88 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004587 599 LENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLM 635 (743)
Q Consensus 599 l~~~~~~~~e~~~~~~~l~~~l~~l~~~~~~~~~~l~ 635 (743)
.+...+.+..+...++.+...+......+..+...+.
T Consensus 160 AE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD 196 (205)
T KOG1003|consen 160 AEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELD 196 (205)
T ss_pred HHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444443333
No 157
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.86 E-value=1.4 Score=51.12 Aligned_cols=6 Identities=0% Similarity=-0.446 Sum_probs=3.6
Q ss_pred cccccc
Q 004587 690 KCSICL 695 (743)
Q Consensus 690 ~C~iC~ 695 (743)
.|+.|.
T Consensus 878 ~~~~~~ 883 (1317)
T KOG0612|consen 878 TKADSE 883 (1317)
T ss_pred chhhhH
Confidence 566665
No 158
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.86 E-value=0.73 Score=47.68 Aligned_cols=11 Identities=9% Similarity=0.138 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 004587 423 YKAWAHVHSLK 433 (743)
Q Consensus 423 ~~~~~~~~~l~ 433 (743)
..++.++..+.
T Consensus 41 ~q~q~ei~~~~ 51 (420)
T COG4942 41 KQIQKEIAALE 51 (420)
T ss_pred HHHHHHHHHHH
Confidence 33334444333
No 159
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=1.1 Score=49.21 Aligned_cols=6 Identities=17% Similarity=0.501 Sum_probs=2.1
Q ss_pred HHHHHH
Q 004587 552 MMESEI 557 (743)
Q Consensus 552 ~l~~el 557 (743)
.+..+|
T Consensus 490 qlqari 495 (1118)
T KOG1029|consen 490 QLQARI 495 (1118)
T ss_pred HHHHHH
Confidence 333333
No 160
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=96.81 E-value=0.054 Score=44.04 Aligned_cols=89 Identities=15% Similarity=0.246 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 498 LSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQ 577 (743)
Q Consensus 498 ~~e~~~l~~~~~el~~~~~~l~~~~~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~el~~l~~~l~~~~~~~~~le~~ 577 (743)
..|+..+..++.+.......+..++..++..+.++..++.++++.|..++..+..+..++..++..+.....-+..+.+.
T Consensus 2 ~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~ 81 (96)
T PF08647_consen 2 QTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKET 81 (96)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45888899999999999999999999999999999999999999999999999999999998888887776666666553
Q ss_pred HHHHHHHHH
Q 004587 578 LRFCLDQAQ 586 (743)
Q Consensus 578 ~~~l~~~l~ 586 (743)
-......+.
T Consensus 82 E~~~~~~l~ 90 (96)
T PF08647_consen 82 EKEFVRKLK 90 (96)
T ss_pred HHHHHHHHH
Confidence 333333333
No 161
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.81 E-value=0.56 Score=45.58 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=15.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 004587 522 ITERDDYNIKLVLEGVRARQLQDALLMDKHMMESE 556 (743)
Q Consensus 522 ~~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~e 556 (743)
+..+.+.+.-|...+.+++....+|..+....+..
T Consensus 139 ~S~lkd~ne~LsQqLskaesK~nsLe~elh~trda 173 (305)
T PF14915_consen 139 VSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDA 173 (305)
T ss_pred HHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444333
No 162
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.76 E-value=0.71 Score=46.15 Aligned_cols=98 Identities=15% Similarity=0.166 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004587 457 QRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEG 536 (743)
Q Consensus 457 ~~l~~~e~~i~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~el~~~~~~l~~~~~~~~~~~~~l~~e~ 536 (743)
.+....+.+-.....++.....+..-+..++..+...+-+...++..+.+.+..++..+..+..+...+......+..+.
T Consensus 95 ~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~ 174 (499)
T COG4372 95 GEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQ 174 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555666666666666666666666777777777777777777777777666666666
Q ss_pred HHHHHHHHHHHHhHHHHH
Q 004587 537 VRARQLQDALLMDKHMME 554 (743)
Q Consensus 537 ~~~~~~~~~l~~e~~~l~ 554 (743)
..+......+..+...|.
T Consensus 175 k~LQ~s~~Qlk~~~~~L~ 192 (499)
T COG4372 175 KQLQASATQLKSQVLDLK 192 (499)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 655544444444444443
No 163
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.00033 Score=65.18 Aligned_cols=52 Identities=17% Similarity=0.452 Sum_probs=39.6
Q ss_pred ccccccccccCCc----------eeccCcccccHhhHHHHhcc-CCCCCcCCCCCCCCCCCcC
Q 004587 689 LKCSICLERPKEV----------VITKCYHLFCNPCVQKVTES-RHRKCPGCAASFSPNDVKP 740 (743)
Q Consensus 689 ~~C~iC~~~~~~~----------~~~~Cgh~fC~~C~~~~~~~-~~~~Cp~c~~~~~~~~~~~ 740 (743)
..|.||+..+... ..+.|+|+|-..||..|--- +...||-|...+......+
T Consensus 225 ~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfs 287 (328)
T KOG1734|consen 225 SVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFS 287 (328)
T ss_pred chhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhcc
Confidence 5899999987553 36799999999999999432 3567999998776554433
No 164
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.57 E-value=0.65 Score=43.27 Aligned_cols=13 Identities=31% Similarity=0.716 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 004587 464 AEIADMRQKLEAF 476 (743)
Q Consensus 464 ~~i~~l~~~l~~~ 476 (743)
.++.+++..+..+
T Consensus 19 n~l~elq~~l~~l 31 (194)
T PF15619_consen 19 NELAELQRKLQEL 31 (194)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 165
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.56 E-value=1.6 Score=47.64 Aligned_cols=25 Identities=20% Similarity=0.050 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 228 QLEKSKSEVFKYQALFEKLQVEKDN 252 (743)
Q Consensus 228 ~l~~~~~~~~~~~~~~~~l~~e~~~ 252 (743)
.+..+...+..+...+..++.+...
T Consensus 152 k~ae~~~lr~k~dss~s~~q~e~~~ 176 (716)
T KOG4593|consen 152 KLAELGTLRNKLDSSLSELQWEVML 176 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444433
No 166
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=0.0036 Score=68.97 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=27.3
Q ss_pred ccccccccccccCC-c-eeccCcccccHhhHHHHhc
Q 004587 687 EILKCSICLERPKE-V-VITKCYHLFCNPCVQKVTE 720 (743)
Q Consensus 687 ~~~~C~iC~~~~~~-~-~~~~Cgh~fC~~C~~~~~~ 720 (743)
..-.|.+|+.++-. | +++||||.|-.+|+-+...
T Consensus 816 p~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred CccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 34599999987644 4 6789999999999988754
No 167
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.00075 Score=49.48 Aligned_cols=46 Identities=24% Similarity=0.578 Sum_probs=33.9
Q ss_pred cccccccccCC------------ceec-cCcccccHhhHHHHhccC--CCCCcCCCCCCCC
Q 004587 690 KCSICLERPKE------------VVIT-KCYHLFCNPCVQKVTESR--HRKCPGCAASFSP 735 (743)
Q Consensus 690 ~C~iC~~~~~~------------~~~~-~Cgh~fC~~C~~~~~~~~--~~~Cp~c~~~~~~ 735 (743)
.|.||.-+|.. |.++ .|.|.|=..||.+|+... ...||+||..|.-
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 66666666533 3333 699999999999998764 3569999988753
No 168
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.00077 Score=70.59 Aligned_cols=38 Identities=37% Similarity=0.733 Sum_probs=31.7
Q ss_pred ccccccccccccCC----ceeccCcccccHhhHHHHhccCCCCCc
Q 004587 687 EILKCSICLERPKE----VVITKCYHLFCNPCVQKVTESRHRKCP 727 (743)
Q Consensus 687 ~~~~C~iC~~~~~~----~~~~~Cgh~fC~~C~~~~~~~~~~~Cp 727 (743)
..+.|+||+..|.. ||.+.|||+.|..|...... ..||
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp 51 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCP 51 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCC
Confidence 34799999887744 79999999999999998765 5688
No 169
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.46 E-value=0.53 Score=40.92 Aligned_cols=75 Identities=12% Similarity=0.089 Sum_probs=30.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHH
Q 004587 542 LQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQV 616 (743)
Q Consensus 542 ~~~~l~~e~~~l~~el~~l~~~l~~~~~~~~~le~~~~~l~~~l~~l~~el~~~~~~l~~~~~~~~e~~~~~~~l 616 (743)
.+.++..++.........+....+..++.+..+..++..+...+..+..++..+.++.+.+...+...+..+..|
T Consensus 25 ~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eL 99 (140)
T PF10473_consen 25 HVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSEL 99 (140)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444444444444444333333333333333333333333
No 170
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=96.44 E-value=0.0016 Score=64.57 Aligned_cols=43 Identities=33% Similarity=0.902 Sum_probs=35.9
Q ss_pred ccccccccccccCCceeccC--cccccHhhHHHHhccCCCCCcCCCCCCC
Q 004587 687 EILKCSICLERPKEVVITKC--YHLFCNPCVQKVTESRHRKCPGCAASFS 734 (743)
Q Consensus 687 ~~~~C~iC~~~~~~~~~~~C--gh~fC~~C~~~~~~~~~~~Cp~c~~~~~ 734 (743)
..+.||||+..+..|+. -| ||+.|.+|.... ..+||+|+.+++
T Consensus 47 ~lleCPvC~~~l~~Pi~-QC~nGHlaCssC~~~~----~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIF-QCDNGHLACSSCRTKV----SNKCPTCRLPIG 91 (299)
T ss_pred hhccCchhhccCcccce-ecCCCcEehhhhhhhh----cccCCccccccc
Confidence 45899999999988865 45 999999999754 346999999997
No 171
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=0.0051 Score=67.22 Aligned_cols=81 Identities=22% Similarity=0.434 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHhhccccccccccccCCc-eeccCcccccH
Q 004587 634 LMELQIELVKERFAKKRLEEDLEMGRRKVLRLQAQTEGSSIIEELQQELREYREILKCSICLERPKEV-VITKCYHLFCN 712 (743)
Q Consensus 634 l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~e~~~l~~~~~C~iC~~~~~~~-~~~~Cgh~fC~ 712 (743)
++.....+.+-+..++...+++..++..+..+...... + ..-.|+.|.....-| |.+.|||.|-.
T Consensus 800 l~~~~~~I~qd~~~Ie~yk~~i~e~r~~l~~lr~sa~i------~--------q~skCs~C~~~LdlP~VhF~CgHsyHq 865 (933)
T KOG2114|consen 800 LNKYSTIIEQDEDAIEVYKKDIEEKRQELETLRTSAQI------F--------QVSKCSACEGTLDLPFVHFLCGHSYHQ 865 (933)
T ss_pred HHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccce------e--------eeeeecccCCccccceeeeecccHHHH
Confidence 33334444445555556666666666666555433211 1 115899999988888 57899999999
Q ss_pred hhHHHHhccCCCCCcCCCCC
Q 004587 713 PCVQKVTESRHRKCPGCAAS 732 (743)
Q Consensus 713 ~C~~~~~~~~~~~Cp~c~~~ 732 (743)
.|... ....||.|...
T Consensus 866 hC~e~----~~~~CP~C~~e 881 (933)
T KOG2114|consen 866 HCLED----KEDKCPKCLPE 881 (933)
T ss_pred Hhhcc----CcccCCccchh
Confidence 99982 34679999873
No 172
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.42 E-value=1.7 Score=46.36 Aligned_cols=25 Identities=8% Similarity=0.259 Sum_probs=11.4
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHHH
Q 004587 312 KEIIAEFRALVSSFPEDMSAMQRQL 336 (743)
Q Consensus 312 ~~~~~e~~~~~~~~~~e~~~l~~~l 336 (743)
...+..+..++.....++..++.+.
T Consensus 293 ~~~l~~l~~Eie~kEeE~e~lq~~~ 317 (581)
T KOG0995|consen 293 EKKLEMLKSEIEEKEEEIEKLQKEN 317 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 173
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.42 E-value=0.0013 Score=63.49 Aligned_cols=45 Identities=22% Similarity=0.621 Sum_probs=36.8
Q ss_pred ccccccccccCCceeccCcccccHhhHHHHhcc-CCCCCcCCCCCC
Q 004587 689 LKCSICLERPKEVVITKCYHLFCNPCVQKVTES-RHRKCPGCAASF 733 (743)
Q Consensus 689 ~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~-~~~~Cp~c~~~~ 733 (743)
..|.||-...+-..++||||..|..|..+.-.- ...-||+|+...
T Consensus 62 ~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 62 MNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 689999999998999999999999999876221 234599999653
No 174
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.0021 Score=59.41 Aligned_cols=53 Identities=17% Similarity=0.395 Sum_probs=43.9
Q ss_pred hccccccccccccCCc----eeccCcccccHhhHHHHhccCCCCCcCCCCCCCCCCCcCc
Q 004587 686 REILKCSICLERPKEV----VITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPV 741 (743)
Q Consensus 686 ~~~~~C~iC~~~~~~~----~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~ 741 (743)
...+.|||-+-.|... ++.+|||+|-...+..+.. ..||+|+.+|...|+..+
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeika---s~C~~C~a~y~~~dvIvl 165 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKA---SVCHVCGAAYQEDDVIVL 165 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhhh---ccccccCCcccccCeEee
Confidence 3468999999888774 5569999999999998753 569999999999997654
No 175
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.0013 Score=66.89 Aligned_cols=36 Identities=25% Similarity=0.542 Sum_probs=31.7
Q ss_pred cCCceeccCcccccHhhHHHHhccCCCCCcCCCCCC
Q 004587 698 PKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASF 733 (743)
Q Consensus 698 ~~~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~ 733 (743)
-..|.++.|||+||..|+..+.......||+||.+.
T Consensus 19 ~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 19 DHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred ccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 455778889999999999999988778899999994
No 176
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.35 E-value=0.014 Score=49.37 Aligned_cols=30 Identities=27% Similarity=0.627 Sum_probs=25.2
Q ss_pred cccccccccccCCc--eeccCcccccHhhHHH
Q 004587 688 ILKCSICLERPKEV--VITKCYHLFCNPCVQK 717 (743)
Q Consensus 688 ~~~C~iC~~~~~~~--~~~~Cgh~fC~~C~~~ 717 (743)
...|++|+.++.++ +++||||+|...|+.+
T Consensus 78 ~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 78 STKCSVCGKPLGNSVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred CCCccCcCCcCCCceEEEeCCCeEEecccccC
Confidence 35899999999876 4679999999999863
No 177
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.002 Score=60.49 Aligned_cols=42 Identities=33% Similarity=0.739 Sum_probs=34.7
Q ss_pred ccccccccccCCceeccCcccc-cHhhHHHHhccCCCCCcCCCCCCCC
Q 004587 689 LKCSICLERPKEVVITKCYHLF-CNPCVQKVTESRHRKCPGCAASFSP 735 (743)
Q Consensus 689 ~~C~iC~~~~~~~~~~~Cgh~f-C~~C~~~~~~~~~~~Cp~c~~~~~~ 735 (743)
-.|-.|+..-...+++||.|.. |..|-.. . +.||+|+.+...
T Consensus 159 ~~Cr~C~~~~~~VlllPCrHl~lC~~C~~~-~----~~CPiC~~~~~s 201 (207)
T KOG1100|consen 159 RSCRKCGEREATVLLLPCRHLCLCGICDES-L----RICPICRSPKTS 201 (207)
T ss_pred ccceecCcCCceEEeecccceEeccccccc-C----ccCCCCcChhhc
Confidence 3499999999888899999986 9999986 2 459999987644
No 178
>PF13514 AAA_27: AAA domain
Probab=96.33 E-value=4.2 Score=49.87 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=15.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004587 277 TDSKIADLGIEIQKQIDEKNRIEMRLEEA 305 (743)
Q Consensus 277 ~~~~i~~l~~~l~~~~~~~~~L~~~l~~~ 305 (743)
+...+..+...+......+..+..++..+
T Consensus 358 l~~~~~~~~~~l~~~~~~~~~~~~~~~~l 386 (1111)
T PF13514_consen 358 LEQALAQARRELEEAERELEQLQAELAAL 386 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34445555555555555555555555444
No 179
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=96.32 E-value=0.48 Score=45.35 Aligned_cols=27 Identities=26% Similarity=0.650 Sum_probs=21.1
Q ss_pred ccHhhHHHHhccCCCCCcCCCCCCCCCC
Q 004587 710 FCNPCVQKVTESRHRKCPGCAASFSPND 737 (743)
Q Consensus 710 fC~~C~~~~~~~~~~~Cp~c~~~~~~~~ 737 (743)
.|.+|...+.++ -..||.|...-...+
T Consensus 196 ~C~sC~qqIHRN-APiCPlCK~KsRSrn 222 (230)
T PF10146_consen 196 TCQSCHQQIHRN-APICPLCKAKSRSRN 222 (230)
T ss_pred hhHhHHHHHhcC-CCCCcccccccccCC
Confidence 399999998885 467999987765544
No 180
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=2.3 Score=46.68 Aligned_cols=74 Identities=26% Similarity=0.287 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 004587 464 AEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGV 537 (743)
Q Consensus 464 ~~i~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~el~~~~~~l~~~~~~~~~~~~~l~~e~~ 537 (743)
.....+..++..+...+..|..++....-.+.....+|+.+....+-+-.++..+.+++.++...+..+.-+..
T Consensus 437 ak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq 510 (1118)
T KOG1029|consen 437 AKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQ 510 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 33333444444444434434333333333333333344444433333333344444444444444444433333
No 181
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.29 E-value=2.6 Score=47.22 Aligned_cols=72 Identities=10% Similarity=0.061 Sum_probs=32.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004587 523 TERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQ 594 (743)
Q Consensus 523 ~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~el~~l~~~l~~~~~~~~~le~~~~~l~~~l~~l~~el~~ 594 (743)
.+.+...........++...|..+..+-..+-.+......+++.....+...++....+...++.+......
T Consensus 413 ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~ 484 (980)
T KOG0980|consen 413 EEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGR 484 (980)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444444444444444444444444333
No 182
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.28 E-value=2.3 Score=46.48 Aligned_cols=33 Identities=27% Similarity=0.244 Sum_probs=15.4
Q ss_pred cccchHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 004587 67 ASSNLQSEVKNLRLALMDLHLKHKSLTRELQSR 99 (743)
Q Consensus 67 ~~~~l~~~~~~~~~~l~~l~~~~~~~~~el~~~ 99 (743)
.+.......-.++..+..++..+...+-++...
T Consensus 56 ~n~~~~s~~~~~~~~l~~Lqns~kr~el~~~k~ 88 (716)
T KOG4593|consen 56 ENITSKSLLMQLEDELMQLQNSHKRAELELTKA 88 (716)
T ss_pred ccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333444444445555555555555444444433
No 183
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.17 E-value=2.5 Score=45.66 Aligned_cols=39 Identities=15% Similarity=0.285 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHH
Q 004587 566 FFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKR 605 (743)
Q Consensus 566 ~~~~~~~~le~~~~~l~~~l~~l~~el~~~~~~l~~~~~~ 605 (743)
.....|..++.++......++.+...+... +.++.++++
T Consensus 314 ~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~E 352 (629)
T KOG0963|consen 314 KHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKE 352 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHH
Confidence 344445555555555555555554444333 344444444
No 184
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.0061 Score=55.21 Aligned_cols=56 Identities=23% Similarity=0.551 Sum_probs=42.8
Q ss_pred HHHHHHHhhc---ccccccccccc--CCceeccCcccccHhhHHHHhcc-------CCCCCcCCCCCC
Q 004587 678 LQQELREYRE---ILKCSICLERP--KEVVITKCYHLFCNPCVQKVTES-------RHRKCPGCAASF 733 (743)
Q Consensus 678 l~~e~~~l~~---~~~C~iC~~~~--~~~~~~~Cgh~fC~~C~~~~~~~-------~~~~Cp~c~~~~ 733 (743)
.|.-++++++ ...|..|..+. .+++.+.|.|.|-+.|+..+.-. ..+.||.|...+
T Consensus 37 VQSYLqWL~DsDY~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 37 VQSYLQWLQDSDYNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred HHHHHHHHhhcCCCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 3455555554 57999999876 55788999999999999998542 345799998765
No 185
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.08 E-value=1.7 Score=43.06 Aligned_cols=101 Identities=11% Similarity=0.150 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004587 453 AISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKL 532 (743)
Q Consensus 453 ~~~~~~l~~~e~~i~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~el~~~~~~l~~~~~~~~~~~~~l 532 (743)
..++.+++.++.+...|+.+...+..+...++.+-..+ +.....++......+..+..++.....+......+|..|
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqL---v~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~L 239 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQL---VLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSL 239 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHH---HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544444443333222221111 111222333333333444444444334444444444444
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Q 004587 533 VLEGVRARQLQDALLMDKHMMESE 556 (743)
Q Consensus 533 ~~e~~~~~~~~~~l~~e~~~l~~e 556 (743)
..++..+......+..+...+...
T Consensus 240 lsqivdlQ~r~k~~~~EnEeL~q~ 263 (306)
T PF04849_consen 240 LSQIVDLQQRCKQLAAENEELQQH 263 (306)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHH
Confidence 444444444444444443333333
No 186
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=96.05 E-value=2.5 Score=44.74 Aligned_cols=92 Identities=15% Similarity=0.152 Sum_probs=41.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 004587 483 LSDALKSKNEEIEAYLSEIETIGQSYDDMQTQN---QQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQ 559 (743)
Q Consensus 483 l~~~l~~~~~e~~~l~~e~~~l~~~~~el~~~~---~~l~~~~~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~el~~ 559 (743)
+..-+...+.....+..+++.+...|-=...+. ......+.++...+..+......-...|..++..+..+...+..
T Consensus 314 l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~ 393 (570)
T COG4477 314 LPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTD 393 (570)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHH
Confidence 334444455555566666666665543222222 23334444444444444444444444445555555555444444
Q ss_pred HHHHHHHHHHHHHHH
Q 004587 560 ANASLNFFDMKAARI 574 (743)
Q Consensus 560 l~~~l~~~~~~~~~l 574 (743)
.......+...+..+
T Consensus 394 i~~~q~~~~e~L~~L 408 (570)
T COG4477 394 IEDEQEKVQEHLTSL 408 (570)
T ss_pred HhhhHHHHHHHHHHH
Confidence 444444433333333
No 187
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.04 E-value=0.0033 Score=60.12 Aligned_cols=58 Identities=17% Similarity=0.366 Sum_probs=46.7
Q ss_pred hcccccccccccc---CCceeccCcccccHhhHHHHhccCC--CCCcCCCCCCCCCCCcCcCC
Q 004587 686 REILKCSICLERP---KEVVITKCYHLFCNPCVQKVTESRH--RKCPGCAASFSPNDVKPVYI 743 (743)
Q Consensus 686 ~~~~~C~iC~~~~---~~~~~~~Cgh~fC~~C~~~~~~~~~--~~Cp~c~~~~~~~~~~~~~~ 743 (743)
-..+.|||-.+.- ..|+.+.|||+.-......+..++. .+||.|...-...++.++||
T Consensus 334 Hs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~~~~~~rvrf 396 (396)
T COG5109 334 HSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMSKYENILRVRF 396 (396)
T ss_pred cceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcchhhhhhhcccC
Confidence 3457999876654 4489999999999999998877653 47999988888888888876
No 188
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=96.02 E-value=0.0019 Score=69.95 Aligned_cols=55 Identities=36% Similarity=0.774 Sum_probs=44.2
Q ss_pred HHHHHhhccccccccccccCCceeccCcccccHhhHHHHhccC--CCCCcCCCCCCC
Q 004587 680 QELREYREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESR--HRKCPGCAASFS 734 (743)
Q Consensus 680 ~e~~~l~~~~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~~--~~~Cp~c~~~~~ 734 (743)
.-+..+...+.|+||...+..|+.+.|.|.||..|+...+... ...||+|+....
T Consensus 13 ~vi~~~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 13 QVINAMQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hHHHHHhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 3455566679999999999999999999999999998876543 346999985543
No 189
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.01 E-value=2.1 Score=43.46 Aligned_cols=14 Identities=36% Similarity=0.593 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 004587 651 LEEDLEMGRRKVLR 664 (743)
Q Consensus 651 ~~~~~~~l~~~~~~ 664 (743)
...++..+..++..
T Consensus 284 ~~~~~~~~~~k~~k 297 (309)
T PF09728_consen 284 LEKELEKLKKKIEK 297 (309)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 190
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=95.94 E-value=0.0055 Score=42.71 Aligned_cols=44 Identities=27% Similarity=0.613 Sum_probs=22.9
Q ss_pred ccccccccccCCcee-ccCcccccHhh---HHHHhccCCCCCcCCCCC
Q 004587 689 LKCSICLERPKEVVI-TKCYHLFCNPC---VQKVTESRHRKCPGCAAS 732 (743)
Q Consensus 689 ~~C~iC~~~~~~~~~-~~Cgh~fC~~C---~~~~~~~~~~~Cp~c~~~ 732 (743)
+.||+.+.++..|+. ..|.|.-|++= +......+.-.||+|+.+
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 789999999999985 58999988743 333334444579999864
No 191
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.94 E-value=3.1 Score=44.89 Aligned_cols=81 Identities=14% Similarity=0.100 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHH-HHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 225 VKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVD-VFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLE 303 (743)
Q Consensus 225 l~~~l~~~~~~~~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~L~~~l~ 303 (743)
|.+....+...+..+...+..++..+........++....+... .....+.-.-..++..+..+..++.++..|...+.
T Consensus 187 L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~ 266 (629)
T KOG0963|consen 187 LKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLA 266 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555566666665555555544444444422111 11112222344555566666666666666666655
Q ss_pred Hh
Q 004587 304 EA 305 (743)
Q Consensus 304 ~~ 305 (743)
..
T Consensus 267 ~~ 268 (629)
T KOG0963|consen 267 KA 268 (629)
T ss_pred hh
Confidence 54
No 192
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.89 E-value=0.0063 Score=42.26 Aligned_cols=41 Identities=17% Similarity=0.623 Sum_probs=31.8
Q ss_pred ccccccc--ccCCceeccCc-----ccccHhhHHHHhccC-CCCCcCCC
Q 004587 690 KCSICLE--RPKEVVITKCY-----HLFCNPCVQKVTESR-HRKCPGCA 730 (743)
Q Consensus 690 ~C~iC~~--~~~~~~~~~Cg-----h~fC~~C~~~~~~~~-~~~Cp~c~ 730 (743)
.|-||+. ...+|.+.||. |.|=..|+.+|+... ...||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889987 34557888995 778899999998654 45799995
No 193
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.88 E-value=1.6 Score=41.01 Aligned_cols=36 Identities=14% Similarity=0.351 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 004587 457 QRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNE 492 (743)
Q Consensus 457 ~~l~~~e~~i~~l~~~l~~~~~~~~~l~~~l~~~~~ 492 (743)
.++...+.++..+...+..+......+..-+...+.
T Consensus 16 ~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek 51 (207)
T PF05010_consen 16 EEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEK 51 (207)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333333444444444444444444444443333333
No 194
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=2.5 Score=42.68 Aligned_cols=33 Identities=24% Similarity=0.510 Sum_probs=24.7
Q ss_pred ccccccccccCC----ceecc--CcccccHhhHHHHhcc
Q 004587 689 LKCSICLERPKE----VVITK--CYHLFCNPCVQKVTES 721 (743)
Q Consensus 689 ~~C~iC~~~~~~----~~~~~--Cgh~fC~~C~~~~~~~ 721 (743)
-.|+.|-..|.. |-.++ ||.+||..|.+..+..
T Consensus 469 e~c~~~~aS~~slk~e~erl~qq~eqi~~~~~~Katvp~ 507 (542)
T KOG0993|consen 469 EQCSNCDASFASLKVEPERLHQQCEQIFCMNCLKATVPS 507 (542)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhHHHhhccc
Confidence 478888777754 32333 9999999999988764
No 195
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=95.70 E-value=4.2 Score=44.61 Aligned_cols=26 Identities=8% Similarity=0.168 Sum_probs=14.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004587 277 TDSKIADLGIEIQKQIDEKNRIEMRL 302 (743)
Q Consensus 277 ~~~~i~~l~~~l~~~~~~~~~L~~~l 302 (743)
+...-..+...++.+..+.+.|..-+
T Consensus 240 we~Er~~L~~tVq~L~edR~~L~~T~ 265 (739)
T PF07111_consen 240 WEPEREELLETVQHLQEDRDALQATA 265 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666666655433
No 196
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.68 E-value=6.8 Score=46.88 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHH
Q 004587 72 QSEVKNLRLALMDLHLKHKSLTRELQ 97 (743)
Q Consensus 72 ~~~~~~~~~~l~~l~~~~~~~~~el~ 97 (743)
..-...+-..+..++.....+...+.
T Consensus 170 e~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 170 EKLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444333333
No 197
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=95.64 E-value=0.0046 Score=40.89 Aligned_cols=43 Identities=23% Similarity=0.670 Sum_probs=24.0
Q ss_pred ccccccccccCCceeccCc-ccccHhhHHHHhccCCCCCcCCCCCCC
Q 004587 689 LKCSICLERPKEVVITKCY-HLFCNPCVQKVTESRHRKCPGCAASFS 734 (743)
Q Consensus 689 ~~C~iC~~~~~~~~~~~Cg-h~fC~~C~~~~~~~~~~~Cp~c~~~~~ 734 (743)
..|..|- |.+.-...|. |-.|..|+..++.. ...||+|+.++.
T Consensus 3 ~nCKsCW--f~~k~Li~C~dHYLCl~CLt~ml~~-s~~C~iC~~~LP 46 (50)
T PF03854_consen 3 YNCKSCW--FANKGLIKCSDHYLCLNCLTLMLSR-SDRCPICGKPLP 46 (50)
T ss_dssp ----SS---S--SSEEE-SS-EEEHHHHHHT-SS-SSEETTTTEE--
T ss_pred ccChhhh--hcCCCeeeecchhHHHHHHHHHhcc-ccCCCcccCcCc
Confidence 4677776 4444455787 66699999998874 455999998874
No 198
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.63 E-value=3.6 Score=43.38 Aligned_cols=51 Identities=18% Similarity=0.282 Sum_probs=35.6
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhHHHHHHHHHH
Q 004587 315 IAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVK 365 (743)
Q Consensus 315 ~~e~~~~~~~~~~e~~~l~~~l~~~~~~~~el~~l~~~~~~l~~~l~~~~~ 365 (743)
.+++..+--++++.+..|+..-..+.+...++..+..+..-+...+.....
T Consensus 172 YSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~ 222 (772)
T KOG0999|consen 172 YSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIR 222 (772)
T ss_pred HHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555677777777776677778888888888777777766665544
No 199
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.46 E-value=0.0046 Score=61.00 Aligned_cols=44 Identities=32% Similarity=0.717 Sum_probs=35.6
Q ss_pred ccccccccccCC----ceeccCcccccHhhHHHHhccC-CCCCcCCCCC
Q 004587 689 LKCSICLERPKE----VVITKCYHLFCNPCVQKVTESR-HRKCPGCAAS 732 (743)
Q Consensus 689 ~~C~iC~~~~~~----~~~~~Cgh~fC~~C~~~~~~~~-~~~Cp~c~~~ 732 (743)
+.|..|++.+.- .-.+||.|+|-..|...++.++ .+.||.||+.
T Consensus 366 L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 366 LYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred hhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 799999998733 2467999999999999997643 5789999943
No 200
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.45 E-value=5.9 Score=44.60 Aligned_cols=34 Identities=6% Similarity=0.016 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004587 509 DDMQTQNQQLLQQITERDDYNIKLVLEGVRARQL 542 (743)
Q Consensus 509 ~el~~~~~~l~~~~~~~~~~~~~l~~e~~~~~~~ 542 (743)
+++....-....++..+...+..+......+-.+
T Consensus 413 ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K 446 (980)
T KOG0980|consen 413 EEAENKALAAENRYEKLKEKYTELRQEHADLLRK 446 (980)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444333333
No 201
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.42 E-value=2.8 Score=40.68 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=6.9
Q ss_pred HHHhhHHHHHHHHHHHHHH
Q 004587 486 ALKSKNEEIEAYLSEIETI 504 (743)
Q Consensus 486 ~l~~~~~e~~~l~~e~~~l 504 (743)
++...+.++..+..+|..+
T Consensus 74 ~i~~~~~eik~l~~eI~~~ 92 (265)
T COG3883 74 EIDQSKAEIKKLQKEIAEL 92 (265)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 202
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.41 E-value=6.6 Score=44.95 Aligned_cols=25 Identities=12% Similarity=0.131 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 004587 281 IADLGIEIQKQIDEKNRIEMRLEEA 305 (743)
Q Consensus 281 i~~l~~~l~~~~~~~~~L~~~l~~~ 305 (743)
...++.++..+..+.......+..+
T Consensus 264 r~~Le~ei~~le~e~~e~~~~l~~l 288 (650)
T TIGR03185 264 REQLERQLKEIEAARKANRAQLREL 288 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555444443
No 203
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=95.39 E-value=0.0084 Score=60.68 Aligned_cols=52 Identities=31% Similarity=0.598 Sum_probs=37.0
Q ss_pred ccccccccccCCceec-----------------cCccc-----ccHhhHHHHhccCC------------CCCcCCCCCCC
Q 004587 689 LKCSICLERPKEVVIT-----------------KCYHL-----FCNPCVQKVTESRH------------RKCPGCAASFS 734 (743)
Q Consensus 689 ~~C~iC~~~~~~~~~~-----------------~Cgh~-----fC~~C~~~~~~~~~------------~~Cp~c~~~~~ 734 (743)
-.|.-|+....+..+. +|+.. .|.+|+.+|+-+|+ -.||+||++|+
T Consensus 272 e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 272 EPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred CCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 5899998765553222 33343 37799999987653 25999999999
Q ss_pred CCCCcC
Q 004587 735 PNDVKP 740 (743)
Q Consensus 735 ~~~~~~ 740 (743)
-.||.-
T Consensus 352 ilDV~~ 357 (358)
T PF10272_consen 352 ILDVCY 357 (358)
T ss_pred eeeeec
Confidence 998854
No 204
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=95.39 E-value=0.017 Score=55.14 Aligned_cols=48 Identities=23% Similarity=0.470 Sum_probs=36.5
Q ss_pred cccccccccccCCc---eeccCcccccHhhHHHHhcc----------------------CCCCCcCCCCCCCC
Q 004587 688 ILKCSICLERPKEV---VITKCYHLFCNPCVQKVTES----------------------RHRKCPGCAASFSP 735 (743)
Q Consensus 688 ~~~C~iC~~~~~~~---~~~~Cgh~fC~~C~~~~~~~----------------------~~~~Cp~c~~~~~~ 735 (743)
...|.||+.-|-+. ++++|.|-|-+.|+.+++.- -...||+||..+..
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 35899999988653 46799999999999988641 01259999988754
No 205
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.35 E-value=4.9 Score=43.06 Aligned_cols=29 Identities=21% Similarity=0.479 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCch
Q 004587 284 LGIEIQKQIDEKNRIEMRLEEASREPGRK 312 (743)
Q Consensus 284 l~~~l~~~~~~~~~L~~~l~~~~~~~~~~ 312 (743)
...++..+......|...+.+.....+..
T Consensus 233 i~~~ie~l~~~n~~l~e~i~e~ek~~~~~ 261 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMINEREKDPGKE 261 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchH
Confidence 33444444444444444444333444433
No 206
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.17 E-value=0.01 Score=54.81 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=31.6
Q ss_pred HhhccccccccccccCCceeccCcccccHhhHHHHh
Q 004587 684 EYREILKCSICLERPKEVVITKCYHLFCNPCVQKVT 719 (743)
Q Consensus 684 ~l~~~~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~ 719 (743)
..+..--|+.|+.++.+||+.|-||+||..||-.++
T Consensus 39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYI 74 (303)
T ss_pred ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHH
Confidence 344556899999999999999999999999998875
No 207
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.013 Score=46.07 Aligned_cols=29 Identities=24% Similarity=0.558 Sum_probs=25.5
Q ss_pred cCcccccHhhHHHHhccCCCCCcCCCCCCC
Q 004587 705 KCYHLFCNPCVQKVTESRHRKCPGCAASFS 734 (743)
Q Consensus 705 ~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~ 734 (743)
.|.|.|=+.||.+|++++++ ||.|.....
T Consensus 80 ~CNHaFH~hCisrWlktr~v-CPLdn~eW~ 108 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNV-CPLDNKEWV 108 (114)
T ss_pred ecchHHHHHHHHHHHhhcCc-CCCcCccee
Confidence 69999999999999998766 999987653
No 208
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.07 E-value=0.0072 Score=66.46 Aligned_cols=47 Identities=23% Similarity=0.488 Sum_probs=35.8
Q ss_pred cccccccccccC-----Cc--eeccCcccccHhhHHHHhccCC-CCCcCCCCCCC
Q 004587 688 ILKCSICLERPK-----EV--VITKCYHLFCNPCVQKVTESRH-RKCPGCAASFS 734 (743)
Q Consensus 688 ~~~C~iC~~~~~-----~~--~~~~Cgh~fC~~C~~~~~~~~~-~~Cp~c~~~~~ 734 (743)
.-.|+||..... -| ..-.|.|-|-..|+..|+.+.. ..||.||..|.
T Consensus 1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 459999987543 12 3346899999999999998754 46999998764
No 209
>PRK11281 hypothetical protein; Provisional
Probab=95.02 E-value=11 Score=45.31 Aligned_cols=18 Identities=11% Similarity=0.030 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 004587 417 AARDLEYKAWAHVHSLKS 434 (743)
Q Consensus 417 ~l~~~~~~~~~~~~~l~~ 434 (743)
.+.+.+..+...+.....
T Consensus 84 ~L~k~l~~Ap~~l~~a~~ 101 (1113)
T PRK11281 84 QLKQQLAQAPAKLRQAQA 101 (1113)
T ss_pred HHHHHHHHhHHHHHHHHH
Confidence 333333333333333333
No 210
>PF13514 AAA_27: AAA domain
Probab=94.96 E-value=13 Score=45.73 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=17.9
Q ss_pred cccchHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 004587 67 ASSNLQSEVKNLRLALMDLHLKHKSLTRELQSR 99 (743)
Q Consensus 67 ~~~~l~~~~~~~~~~l~~l~~~~~~~~~el~~~ 99 (743)
.+..+...+..+...+..+..++..+..++..+
T Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l 275 (1111)
T PF13514_consen 243 RLEQLEEELAEAQAQLERLQEELAQLEEELDAL 275 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555555555555555555555555555443
No 211
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.051 Score=55.36 Aligned_cols=44 Identities=27% Similarity=0.534 Sum_probs=36.6
Q ss_pred ccccccccccCC------ceecc--------CcccccHhhHHHHhccCCCCCcCCCCC
Q 004587 689 LKCSICLERPKE------VVITK--------CYHLFCNPCVQKVTESRHRKCPGCAAS 732 (743)
Q Consensus 689 ~~C~iC~~~~~~------~~~~~--------Cgh~fC~~C~~~~~~~~~~~Cp~c~~~ 732 (743)
..|.+|...|.. |.++. |||+.|..|+...+......||+|+.+
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 589999888762 45556 999999999999987767889999875
No 212
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=94.85 E-value=0.033 Score=38.55 Aligned_cols=47 Identities=19% Similarity=0.511 Sum_probs=33.5
Q ss_pred ccccccccccCC--ceeccCc--ccccHhhHHHHhccCCCCCcCCCCCCCCCCC
Q 004587 689 LKCSICLERPKE--VVITKCY--HLFCNPCVQKVTESRHRKCPGCAASFSPNDV 738 (743)
Q Consensus 689 ~~C~iC~~~~~~--~~~~~Cg--h~fC~~C~~~~~~~~~~~Cp~c~~~~~~~~~ 738 (743)
..|..|...+-. +-...|. .+||..|....+. ..||.|+-.|...-+
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~---~~CPNCgGelv~RP~ 56 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETMLN---GVCPNCGGELVRRPR 56 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc---CcCcCCCCccccCCC
Confidence 678888775532 2234454 5799999999875 569999998876543
No 213
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.83 E-value=5 Score=40.35 Aligned_cols=45 Identities=18% Similarity=0.142 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 619 SLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVL 663 (743)
Q Consensus 619 ~l~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 663 (743)
.+.+++.....+-..+.+-.-.+..-+...+-+-..+..+++++.
T Consensus 273 s~sdLksl~~aLle~indK~~al~Hqr~tNkILg~rv~ELE~kl~ 317 (319)
T PF09789_consen 273 SISDLKSLATALLETINDKNLALQHQRKTNKILGNRVAELEKKLK 317 (319)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555555555555555555555443
No 214
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=94.77 E-value=0.0076 Score=45.64 Aligned_cols=46 Identities=28% Similarity=0.605 Sum_probs=22.5
Q ss_pred ccccccccccC-C---ceec----cCcccccHhhHHHHhcc----CC------CCCcCCCCCCC
Q 004587 689 LKCSICLERPK-E---VVIT----KCYHLFCNPCVQKVTES----RH------RKCPGCAASFS 734 (743)
Q Consensus 689 ~~C~iC~~~~~-~---~~~~----~Cgh~fC~~C~~~~~~~----~~------~~Cp~c~~~~~ 734 (743)
..|+||+..+. + |... .||+.|=..|+..|+.. +. ..||.|+.++.
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 68999998754 2 2222 79999999999999753 21 24999998874
No 215
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=94.71 E-value=0.004 Score=45.80 Aligned_cols=39 Identities=21% Similarity=0.560 Sum_probs=23.2
Q ss_pred ccccccccccCCceeccCcccccHhhHHHHhccCCCCCcCCCCCC
Q 004587 689 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASF 733 (743)
Q Consensus 689 ~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~ 733 (743)
+.||.|..++...- ||.+|..|-..+.. ...||-|+.++
T Consensus 2 ~~CP~C~~~L~~~~----~~~~C~~C~~~~~~--~a~CPdC~~~L 40 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHYHCEACQKDYKK--EAFCPDCGQPL 40 (70)
T ss_dssp -B-SSS-SBEEEET----TEEEETTT--EEEE--EEE-TTT-SB-
T ss_pred CcCCCCCCccEEeC----CEEECcccccccee--cccCCCcccHH
Confidence 58999998755432 78889999998654 45699998876
No 216
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.70 E-value=6.9 Score=41.42 Aligned_cols=28 Identities=14% Similarity=0.302 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004587 278 DSKIADLGIEIQKQIDEKNRIEMRLEEA 305 (743)
Q Consensus 278 ~~~i~~l~~~l~~~~~~~~~L~~~l~~~ 305 (743)
+.++++.=..++.-..++..|..++..+
T Consensus 228 ekQlEEALeTlq~EReqk~alkkEL~q~ 255 (772)
T KOG0999|consen 228 EKQLEEALETLQQEREQKNALKKELSQY 255 (772)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 4445544455555555555666555544
No 217
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=94.59 E-value=0.0093 Score=68.44 Aligned_cols=53 Identities=25% Similarity=0.449 Sum_probs=42.4
Q ss_pred HHHHHhhccccccccccccCC-ceeccCcccccHhhHHHHhccCCCCCcCCCCCC
Q 004587 680 QELREYREILKCSICLERPKE-VVITKCYHLFCNPCVQKVTESRHRKCPGCAASF 733 (743)
Q Consensus 680 ~e~~~l~~~~~C~iC~~~~~~-~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~ 733 (743)
....++-..+.|++|++...+ ..+..|||.||..|...|... ...||+|...+
T Consensus 1145 ~y~~~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1145 RYLMNLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICKSIK 1198 (1394)
T ss_pred HHHHHhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchhhhh
Confidence 334455556799999999884 568899999999999999884 56799998654
No 218
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.59 E-value=2.5 Score=35.81 Aligned_cols=88 Identities=23% Similarity=0.330 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 004587 455 SQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIE---AYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIK 531 (743)
Q Consensus 455 ~~~~l~~~e~~i~~l~~~l~~~~~~~~~l~~~l~~~~~e~~---~l~~e~~~l~~~~~el~~~~~~l~~~~~~~~~~~~~ 531 (743)
++..|+.++.++..++.++..+......+...|-.+-.+.+ ....++..+...+.+++.....+..-+-+....+.+
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veE 100 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEE 100 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 33344444444444444444444443333333333333222 222233444444444444444444444444444444
Q ss_pred HHHHHHHHHHH
Q 004587 532 LVLEGVRARQL 542 (743)
Q Consensus 532 l~~e~~~~~~~ 542 (743)
|...+..++..
T Consensus 101 L~~Dv~DlK~m 111 (120)
T PF12325_consen 101 LRADVQDLKEM 111 (120)
T ss_pred HHHHHHHHHHH
Confidence 44444443333
No 219
>PHA03096 p28-like protein; Provisional
Probab=94.40 E-value=0.017 Score=56.89 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=31.1
Q ss_pred ccccccccccCC--------ceeccCcccccHhhHHHHhccC--CCCCcCCCCC
Q 004587 689 LKCSICLERPKE--------VVITKCYHLFCNPCVQKVTESR--HRKCPGCAAS 732 (743)
Q Consensus 689 ~~C~iC~~~~~~--------~~~~~Cgh~fC~~C~~~~~~~~--~~~Cp~c~~~ 732 (743)
-.|.||++.... .+...|-|.||..|+..|...+ ...||.|+..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 479999986532 1344799999999999986643 2346666544
No 220
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.02 Score=54.10 Aligned_cols=34 Identities=32% Similarity=0.822 Sum_probs=29.8
Q ss_pred cccccccccccCCceeccC----cccccHhhHHHHhcc
Q 004587 688 ILKCSICLERPKEVVITKC----YHLFCNPCVQKVTES 721 (743)
Q Consensus 688 ~~~C~iC~~~~~~~~~~~C----gh~fC~~C~~~~~~~ 721 (743)
.+.|.+|+++.-+.-+..| +|-||+.|....++.
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccceecccCHHHHHh
Confidence 4799999999999877777 799999999988764
No 221
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.23 E-value=5 Score=37.85 Aligned_cols=39 Identities=13% Similarity=0.076 Sum_probs=19.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 004587 520 QQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQ 558 (743)
Q Consensus 520 ~~~~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~el~ 558 (743)
..+..++..+..+.-+...+.+.+..+..+...+.....
T Consensus 93 ~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 93 ARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555554444
No 222
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=0.012 Score=58.76 Aligned_cols=42 Identities=29% Similarity=0.739 Sum_probs=33.3
Q ss_pred ceeccCcccccHhhHHHHhccC-CCCCcCCCCCCCCCCCcCcC
Q 004587 701 VVITKCYHLFCNPCVQKVTESR-HRKCPGCAASFSPNDVKPVY 742 (743)
Q Consensus 701 ~~~~~Cgh~fC~~C~~~~~~~~-~~~Cp~c~~~~~~~~~~~~~ 742 (743)
.+++.|||.|...||.+|+... ...||.|...-...++++.|
T Consensus 22 ~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~ 64 (463)
T KOG1645|consen 22 IVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEY 64 (463)
T ss_pred EeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHH
Confidence 3678999999999999998522 23599999887777777665
No 223
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.16 E-value=5.6 Score=38.14 Aligned_cols=27 Identities=33% Similarity=0.321 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 633 TLMELQIELVKERFAKKRLEEDLEMGR 659 (743)
Q Consensus 633 ~l~~~~~~l~~~~~~~~~~~~~~~~l~ 659 (743)
.+.++...+...-.++++++.++..+.
T Consensus 163 k~e~L~ekynkeveerkrle~e~k~lq 189 (307)
T PF10481_consen 163 KYEELQEKYNKEVEERKRLEAEVKALQ 189 (307)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 445555555555566666666666665
No 224
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=94.15 E-value=0.019 Score=55.00 Aligned_cols=42 Identities=24% Similarity=0.557 Sum_probs=30.1
Q ss_pred ccccccccccCCc-eeccCcccccHhhHHHHhccCCCCCcCCCCCC
Q 004587 689 LKCSICLERPKEV-VITKCYHLFCNPCVQKVTESRHRKCPGCAASF 733 (743)
Q Consensus 689 ~~C~iC~~~~~~~-~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~ 733 (743)
--|--|...+.-. ..+||-|+||..|.-.-. ...||.|.-.+
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~---dK~Cp~C~d~V 133 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECARSDS---DKICPLCDDRV 133 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhhcCc---cccCcCcccHH
Confidence 4677777666554 356999999999986532 35699997544
No 225
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.13 E-value=14 Score=42.45 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004587 283 DLGIEIQKQIDEKNRIEMRLE 303 (743)
Q Consensus 283 ~l~~~l~~~~~~~~~L~~~l~ 303 (743)
+--..+..++.+|.+|..-++
T Consensus 187 e~vkkiakLEaEC~rLr~l~r 207 (769)
T PF05911_consen 187 ESVKKIAKLEAECQRLRALVR 207 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333566677777777775554
No 226
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=0.021 Score=56.63 Aligned_cols=37 Identities=30% Similarity=0.673 Sum_probs=28.4
Q ss_pred eccCcccccHhhHHHHhccC--CCCCcCCCCCCCCCCCc
Q 004587 703 ITKCYHLFCNPCVQKVTESR--HRKCPGCAASFSPNDVK 739 (743)
Q Consensus 703 ~~~Cgh~fC~~C~~~~~~~~--~~~Cp~c~~~~~~~~~~ 739 (743)
+-.|||+|-..|+..|+... +|.||+|+.......+.
T Consensus 23 i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~~ 61 (465)
T KOG0827|consen 23 IGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHVA 61 (465)
T ss_pred ccchhhHHHHHHHHHHHccCCccCCCCceeecccceeee
Confidence 44699999999999998753 36899999666555443
No 227
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.02 E-value=0.055 Score=39.32 Aligned_cols=49 Identities=20% Similarity=0.573 Sum_probs=33.7
Q ss_pred ccccccccccC----CceeccCcccccHhhHHHHhccCCCCCcCCCCCCCCCCCcC
Q 004587 689 LKCSICLERPK----EVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKP 740 (743)
Q Consensus 689 ~~C~iC~~~~~----~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~ 740 (743)
..|..|-...- +..|-.=-|+||.+|....+. ..||.|+-.+....++|
T Consensus 6 PnCECCDrDLpp~s~dA~ICtfEcTFCadCae~~l~---g~CPnCGGelv~RP~RP 58 (84)
T COG3813 6 PNCECCDRDLPPDSTDARICTFECTFCADCAENRLH---GLCPNCGGELVARPIRP 58 (84)
T ss_pred CCCcccCCCCCCCCCceeEEEEeeehhHhHHHHhhc---CcCCCCCchhhcCcCCh
Confidence 57877754331 122323358999999998765 56999999887776665
No 228
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.01 E-value=15 Score=42.58 Aligned_cols=78 Identities=10% Similarity=0.055 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 004587 479 DMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESE 556 (743)
Q Consensus 479 ~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~el~~~~~~l~~~~~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~e 556 (743)
++..++..+.-++..+..+..++..+...+...+.++......+....-++..+...+.........|+..+..+...
T Consensus 677 e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~ 754 (1141)
T KOG0018|consen 677 EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDR 754 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555555555555555544444444444444444444444444444444444433333
No 229
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=93.95 E-value=6.8 Score=38.37 Aligned_cols=89 Identities=13% Similarity=0.172 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 508 YDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQR 587 (743)
Q Consensus 508 ~~el~~~~~~l~~~~~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~el~~l~~~l~~~~~~~~~le~~~~~l~~~l~~ 587 (743)
+..+...+.-|.+++...+.....|..++......+..-.--+..+...+.+...++.++..-...-...+......-+.
T Consensus 139 ~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes 218 (305)
T PF14915_consen 139 VSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQES 218 (305)
T ss_pred HHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44555566666677777777777777776666655544333344444444444444444433333333334444444444
Q ss_pred HHHHHHhhH
Q 004587 588 LAEDRSQNS 596 (743)
Q Consensus 588 l~~el~~~~ 596 (743)
++..+.+++
T Consensus 219 ~eERL~Qlq 227 (305)
T PF14915_consen 219 LEERLSQLQ 227 (305)
T ss_pred HHHHHHHHH
Confidence 444443333
No 230
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=93.71 E-value=9 Score=38.93 Aligned_cols=59 Identities=19% Similarity=0.231 Sum_probs=23.8
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 595 NSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEE 653 (743)
Q Consensus 595 ~~~~l~~~~~~~~e~~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 653 (743)
+..+++...+++..++.+...++...+.....+..+-........++......+..++.
T Consensus 242 fk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~ 300 (309)
T PF09728_consen 242 FKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEK 300 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444433333333333333333333333333
No 231
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.66 E-value=4.5 Score=38.73 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004587 500 EIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEG 536 (743)
Q Consensus 500 e~~~l~~~~~el~~~~~~l~~~~~~~~~~~~~l~~e~ 536 (743)
.++.-...+..+..++..+......++....++..++
T Consensus 54 K~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdl 90 (307)
T PF10481_consen 54 KVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDL 90 (307)
T ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHH
Confidence 3333334444455555555444444444444444433
No 232
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=93.65 E-value=14 Score=40.87 Aligned_cols=22 Identities=14% Similarity=-0.055 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 004587 415 VLAARDLEYKAWAHVHSLKSSL 436 (743)
Q Consensus 415 ~~~l~~~~~~~~~~~~~l~~~l 436 (743)
...+..++..++.+-+.+...+
T Consensus 473 ~~dL~~ELqqLReERdRl~aeL 494 (739)
T PF07111_consen 473 VTDLSLELQQLREERDRLDAEL 494 (739)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554443
No 233
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.60 E-value=10 Score=39.12 Aligned_cols=15 Identities=13% Similarity=0.308 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHhhc
Q 004587 673 SIIEELQQELREYRE 687 (743)
Q Consensus 673 ~~~~~l~~e~~~l~~ 687 (743)
..+..|...++.+..
T Consensus 276 ~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 276 SEVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445666666665554
No 234
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=93.45 E-value=0.025 Score=56.33 Aligned_cols=43 Identities=23% Similarity=0.478 Sum_probs=31.1
Q ss_pred ccccccccccCCceec----cCc--ccccHhhHHHHhccCCCCCcCCCCC
Q 004587 689 LKCSICLERPKEVVIT----KCY--HLFCNPCVQKVTESRHRKCPGCAAS 732 (743)
Q Consensus 689 ~~C~iC~~~~~~~~~~----~Cg--h~fC~~C~~~~~~~~~~~Cp~c~~~ 732 (743)
-.||||+....-.++. .=| |.+|.-|-..|... ...||.|+..
T Consensus 185 ~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~-R~~C~~Cg~~ 233 (305)
T TIGR01562 185 TLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV-RVKCSHCEES 233 (305)
T ss_pred CcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc-CccCCCCCCC
Confidence 5999999877544332 245 44599999998664 4569999974
No 235
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=93.41 E-value=0.02 Score=57.78 Aligned_cols=43 Identities=26% Similarity=0.459 Sum_probs=21.3
Q ss_pred ccccccccccCCceeccC---c--ccccHhhHHHHhccCCCCCcCCCCC
Q 004587 689 LKCSICLERPKEVVITKC---Y--HLFCNPCVQKVTESRHRKCPGCAAS 732 (743)
Q Consensus 689 ~~C~iC~~~~~~~~~~~C---g--h~fC~~C~~~~~~~~~~~Cp~c~~~ 732 (743)
-.||||+....-.++..= | |.+|.-|-..|... ...||.|+..
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~-R~~Cp~Cg~~ 220 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV-RIKCPYCGNT 220 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEEEETTT--EEE---TTS-TTT---
T ss_pred CcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec-CCCCcCCCCC
Confidence 699999987766555433 4 55699999998664 3569999865
No 236
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=93.32 E-value=0.033 Score=47.12 Aligned_cols=33 Identities=27% Similarity=0.688 Sum_probs=27.1
Q ss_pred cccccccccccCC---ceeccCc------ccccHhhHHHHhc
Q 004587 688 ILKCSICLERPKE---VVITKCY------HLFCNPCVQKVTE 720 (743)
Q Consensus 688 ~~~C~iC~~~~~~---~~~~~Cg------h~fC~~C~~~~~~ 720 (743)
...|.||+....+ .|.++|| |+||..|+.+|.+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 5899999998766 4667887 6799999999943
No 237
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=93.28 E-value=0.039 Score=47.01 Aligned_cols=44 Identities=20% Similarity=0.358 Sum_probs=30.0
Q ss_pred cccccccccccCC-----ceeccCcccccHhhHHHHhccCCCCCcCCCC
Q 004587 688 ILKCSICLERPKE-----VVITKCYHLFCNPCVQKVTESRHRKCPGCAA 731 (743)
Q Consensus 688 ~~~C~iC~~~~~~-----~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~ 731 (743)
...|.+|+.+|.- .+...|+|.+|..|.......+.-.|.+|..
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQK 102 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHH
Confidence 3699999987632 2566899999999988733333446998853
No 238
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=93.27 E-value=12 Score=38.97 Aligned_cols=61 Identities=11% Similarity=0.107 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHHHHHHHHHhhhhHhhH
Q 004587 381 IHKLQAMVQDLTDSNLELKLILDMYR-RESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSL 441 (743)
Q Consensus 381 ~~~l~~~i~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~ 441 (743)
+..|+.....+..+...+........ ....-...+..+..++...+.++..|+...+++..
T Consensus 297 i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~ 358 (622)
T COG5185 297 IKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHK 358 (622)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 45555555555555444444332111 11111222444555555555555555554444443
No 239
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=0.038 Score=57.72 Aligned_cols=50 Identities=30% Similarity=0.747 Sum_probs=33.8
Q ss_pred cccccccccccCCc----eeccCcccccHhhHHHHhccC-----CCCCcC--CCCCCCCCC
Q 004587 688 ILKCSICLERPKEV----VITKCYHLFCNPCVQKVTESR-----HRKCPG--CAASFSPND 737 (743)
Q Consensus 688 ~~~C~iC~~~~~~~----~~~~Cgh~fC~~C~~~~~~~~-----~~~Cp~--c~~~~~~~~ 737 (743)
...|+||+..+..+ .+..|||.||..|...++..+ ...||. |...+...+
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~ 206 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLES 206 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHH
Confidence 36899999443332 256899999999999987743 345765 555554433
No 240
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.12 E-value=25 Score=42.24 Aligned_cols=8 Identities=13% Similarity=-0.105 Sum_probs=3.9
Q ss_pred eccCcccc
Q 004587 703 ITKCYHLF 710 (743)
Q Consensus 703 ~~~Cgh~f 710 (743)
.++=|-+|
T Consensus 815 ~LSGGE~~ 822 (908)
T COG0419 815 TLSGGERF 822 (908)
T ss_pred cCCchHHH
Confidence 44445554
No 241
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=93.10 E-value=0.026 Score=56.56 Aligned_cols=49 Identities=18% Similarity=0.447 Sum_probs=0.0
Q ss_pred ccccccccccc--------------CC-----ceeccCcccccHhhHHHHhccC--------CCCCcCCCCCCCCC
Q 004587 688 ILKCSICLERP--------------KE-----VVITKCYHLFCNPCVQKVTESR--------HRKCPGCAASFSPN 736 (743)
Q Consensus 688 ~~~C~iC~~~~--------------~~-----~~~~~Cgh~fC~~C~~~~~~~~--------~~~Cp~c~~~~~~~ 736 (743)
.-.||+|...- .+ .++-||||+.-.....-|.... +..||+|..++...
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~ 403 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGE 403 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCC
Confidence 46999998642 11 2566999986666666554332 23699999998753
No 242
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.03 E-value=1.3 Score=41.77 Aligned_cols=9 Identities=11% Similarity=0.412 Sum_probs=0.0
Q ss_pred HHHHHHHHH
Q 004587 469 MRQKLEAFK 477 (743)
Q Consensus 469 l~~~l~~~~ 477 (743)
++.++..+.
T Consensus 79 l~~ELael~ 87 (194)
T PF08614_consen 79 LQEELAELY 87 (194)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 333333333
No 243
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=92.65 E-value=0.011 Score=44.97 Aligned_cols=33 Identities=18% Similarity=0.466 Sum_probs=18.3
Q ss_pred cccccccccccCCce----eccCcccccHhhHHHHhc
Q 004587 688 ILKCSICLERPKEVV----ITKCYHLFCNPCVQKVTE 720 (743)
Q Consensus 688 ~~~C~iC~~~~~~~~----~~~Cgh~fC~~C~~~~~~ 720 (743)
...|.+|...|.-.. --.||++||..|......
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~ 45 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIP 45 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEc
Confidence 468999999995432 237999999999987654
No 244
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.65 E-value=0.064 Score=57.74 Aligned_cols=53 Identities=30% Similarity=0.689 Sum_probs=39.7
Q ss_pred ccccccccccccCC-ceeccCcccccHhhHHHHhccCC-------CCCcC--CCCCCCCCCCc
Q 004587 687 EILKCSICLERPKE-VVITKCYHLFCNPCVQKVTESRH-------RKCPG--CAASFSPNDVK 739 (743)
Q Consensus 687 ~~~~C~iC~~~~~~-~~~~~Cgh~fC~~C~~~~~~~~~-------~~Cp~--c~~~~~~~~~~ 739 (743)
....|.||...+.. .+.+.|||.||..|...++..+. .+||. |...++..+|.
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i~ 131 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTVE 131 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCceee
Confidence 34799999998886 67789999999999999887531 24654 66666655543
No 245
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.64 E-value=11 Score=36.80 Aligned_cols=26 Identities=12% Similarity=0.410 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Q 004587 469 MRQKLEAFKRDMVSLSDALKSKNEEI 494 (743)
Q Consensus 469 l~~~l~~~~~~~~~l~~~l~~~~~e~ 494 (743)
++.+++.+..++.++..++...+.++
T Consensus 50 ~q~ei~~L~~qi~~~~~k~~~~~~~i 75 (265)
T COG3883 50 IQNEIESLDNQIEEIQSKIDELQKEI 75 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 246
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.64 E-value=24 Score=41.43 Aligned_cols=27 Identities=15% Similarity=0.210 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 459 LAAAEAEIADMRQKLEAFKRDMVSLSD 485 (743)
Q Consensus 459 l~~~e~~i~~l~~~l~~~~~~~~~l~~ 485 (743)
...+..++..++.++...+.++.....
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~fk~ 222 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAYRA 222 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 247
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=92.63 E-value=19 Score=39.76 Aligned_cols=13 Identities=0% Similarity=0.041 Sum_probs=5.3
Q ss_pred HHHHHHHhhhhhH
Q 004587 383 KLQAMVQDLTDSN 395 (743)
Q Consensus 383 ~l~~~i~~l~~~~ 395 (743)
.+..++..++..+
T Consensus 165 fl~~ql~~~~~~L 177 (498)
T TIGR03007 165 FIDEQIKTYEKKL 177 (498)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 248
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.51 E-value=24 Score=40.50 Aligned_cols=21 Identities=10% Similarity=-0.127 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 004587 416 LAARDLEYKAWAHVHSLKSSL 436 (743)
Q Consensus 416 ~~l~~~~~~~~~~~~~l~~~l 436 (743)
..+..+...+..++......+
T Consensus 265 ~~Le~ei~~le~e~~e~~~~l 285 (650)
T TIGR03185 265 EQLERQLKEIEAARKANRAQL 285 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 249
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=92.43 E-value=0.038 Score=40.11 Aligned_cols=33 Identities=18% Similarity=0.385 Sum_probs=25.7
Q ss_pred ccccccccccCCc----eeccCcccccHhhHHHHhcc
Q 004587 689 LKCSICLERPKEV----VITKCYHLFCNPCVQKVTES 721 (743)
Q Consensus 689 ~~C~iC~~~~~~~----~~~~Cgh~fC~~C~~~~~~~ 721 (743)
..|++|...|... --..||++||..|.......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~ 39 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPL 39 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeeec
Confidence 4799999888653 23479999999999987553
No 250
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=92.25 E-value=0.057 Score=53.81 Aligned_cols=44 Identities=25% Similarity=0.452 Sum_probs=31.5
Q ss_pred cccccccccccCCcee-c--cCccc--ccHhhHHHHhccCCCCCcCCCCC
Q 004587 688 ILKCSICLERPKEVVI-T--KCYHL--FCNPCVQKVTESRHRKCPGCAAS 732 (743)
Q Consensus 688 ~~~C~iC~~~~~~~~~-~--~Cgh~--fC~~C~~~~~~~~~~~Cp~c~~~ 732 (743)
...||||+....-.++ . .=|+. +|.-|-..|... ...||.|+..
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~-R~~C~~Cg~~ 235 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV-RVKCSNCEQS 235 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccccc-CccCCCCCCC
Confidence 4799999987755443 2 34544 499999998664 4569999963
No 251
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=92.24 E-value=0.13 Score=35.62 Aligned_cols=39 Identities=28% Similarity=0.639 Sum_probs=22.0
Q ss_pred ccccccccCCc-------eec---cCcccccHhhHHHHhccCCCCCcCCC
Q 004587 691 CSICLERPKEV-------VIT---KCYHLFCNPCVQKVTESRHRKCPGCA 730 (743)
Q Consensus 691 C~iC~~~~~~~-------~~~---~Cgh~fC~~C~~~~~~~~~~~Cp~c~ 730 (743)
|.-|..+|..+ ... .|++.||.+|=. ++...-+.||.|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~-fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDV-FIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHH-TTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcCh-hhhccccCCcCCC
Confidence 66777777664 222 799999999954 4333345699994
No 252
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=92.23 E-value=0.046 Score=52.14 Aligned_cols=54 Identities=19% Similarity=0.410 Sum_probs=30.8
Q ss_pred ccccccccccccCCceecc-Cccc------ccHhh--HHHHhccCCCCCcCCCCCCCCCCCcCc
Q 004587 687 EILKCSICLERPKEVVITK-CYHL------FCNPC--VQKVTESRHRKCPGCAASFSPNDVKPV 741 (743)
Q Consensus 687 ~~~~C~iC~~~~~~~~~~~-Cgh~------fC~~C--~~~~~~~~~~~Cp~c~~~~~~~~~~~~ 741 (743)
....||+|+..|+...+.+ =+.+ ||..= +..++. ....||.||-.+...|+..+
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y-~V~vCP~CgyA~~~~~F~~l 66 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFY-EVWVCPHCGYAAFEEDFEKL 66 (214)
T ss_pred CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeee-eEEECCCCCCcccccccccC
Confidence 4579999999997764331 1111 12110 111111 12369999999988876543
No 253
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.12 E-value=0.067 Score=43.95 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=15.6
Q ss_pred cccccccCCceeccCcccccHh
Q 004587 692 SICLERPKEVVITKCYHLFCNP 713 (743)
Q Consensus 692 ~iC~~~~~~~~~~~Cgh~fC~~ 713 (743)
-||...-...+.-.|||.||..
T Consensus 61 fi~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 61 FICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred EEEecccccEEEEeccccccCh
Confidence 4666666655556899999974
No 254
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=92.08 E-value=14 Score=36.82 Aligned_cols=10 Identities=30% Similarity=0.561 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 004587 603 QKRLSDVRKS 612 (743)
Q Consensus 603 ~~~~~e~~~~ 612 (743)
..++.++..-
T Consensus 191 ~~kL~Dl~~~ 200 (264)
T PF06008_consen 191 NAKLQDLRDL 200 (264)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 255
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=92.05 E-value=0.053 Score=58.73 Aligned_cols=46 Identities=13% Similarity=0.260 Sum_probs=31.5
Q ss_pred ccccccccccCCc----eec---cCcccccHhhHHHHhcc----C-CCCCcCCCCCCC
Q 004587 689 LKCSICLERPKEV----VIT---KCYHLFCNPCVQKVTES----R-HRKCPGCAASFS 734 (743)
Q Consensus 689 ~~C~iC~~~~~~~----~~~---~Cgh~fC~~C~~~~~~~----~-~~~Cp~c~~~~~ 734 (743)
.+|++|-..|+++ -+. .|+|.||..||..|... + .-.||+|..+|.
T Consensus 97 ~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 97 DTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 4777777666663 233 49999999999999653 1 223788876663
No 256
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=91.99 E-value=34 Score=41.19 Aligned_cols=7 Identities=14% Similarity=0.491 Sum_probs=2.6
Q ss_pred HHHHHHh
Q 004587 384 LQAMVQD 390 (743)
Q Consensus 384 l~~~i~~ 390 (743)
++..+.+
T Consensus 70 ~~~~i~~ 76 (1109)
T PRK10929 70 YQQVIDN 76 (1109)
T ss_pred HHHHHHH
Confidence 3333333
No 257
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=91.98 E-value=34 Score=41.18 Aligned_cols=53 Identities=9% Similarity=-0.026 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 004587 508 YDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQA 560 (743)
Q Consensus 508 ~~el~~~~~~l~~~~~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~el~~l 560 (743)
+...-..|..+.+.+......+..+..+....++.+..+......++.+++-+
T Consensus 260 i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l 312 (1109)
T PRK10929 260 IVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWL 312 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333456777777777777777777777777777777766666666666554
No 258
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=91.88 E-value=15 Score=36.65 Aligned_cols=19 Identities=16% Similarity=0.078 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 004587 418 ARDLEYKAWAHVHSLKSSL 436 (743)
Q Consensus 418 l~~~~~~~~~~~~~l~~~l 436 (743)
+..-+..+..+|..|+..+
T Consensus 227 ~~shI~~Lr~EV~RLR~qL 245 (310)
T PF09755_consen 227 LSSHIRSLRQEVSRLRQQL 245 (310)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555444
No 259
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.74 E-value=0.059 Score=51.19 Aligned_cols=36 Identities=33% Similarity=0.835 Sum_probs=27.1
Q ss_pred CcccccHhhHHHHhccC------------CCCCcCCCCCCCCCCCcCc
Q 004587 706 CYHLFCNPCVQKVTESR------------HRKCPGCAASFSPNDVKPV 741 (743)
Q Consensus 706 Cgh~fC~~C~~~~~~~~------------~~~Cp~c~~~~~~~~~~~~ 741 (743)
|.-..|.+|+.+|+-.| .-.||+||+.|+-.||.-+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv~~v 372 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDVHCV 372 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeeeeEE
Confidence 45556789999997543 2369999999999887644
No 260
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.74 E-value=22 Score=38.34 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 633 TLMELQIELVKERFAKKRLEEDLE 656 (743)
Q Consensus 633 ~l~~~~~~l~~~~~~~~~~~~~~~ 656 (743)
.+.....++...+..+..+...+.
T Consensus 247 ~l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 247 ELTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444443
No 261
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=91.74 E-value=0.043 Score=31.02 Aligned_cols=23 Identities=22% Similarity=0.905 Sum_probs=14.7
Q ss_pred ccHhhHHHHhccCCCCCcCCCCCC
Q 004587 710 FCNPCVQKVTESRHRKCPGCAASF 733 (743)
Q Consensus 710 fC~~C~~~~~~~~~~~Cp~c~~~~ 733 (743)
||..|-..+.. ...+||.||.+|
T Consensus 1 ~Cp~CG~~~~~-~~~fC~~CG~~l 23 (23)
T PF13240_consen 1 YCPNCGAEIED-DAKFCPNCGTPL 23 (23)
T ss_pred CCcccCCCCCC-cCcchhhhCCcC
Confidence 45556565543 456788888765
No 262
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=91.73 E-value=0.054 Score=31.79 Aligned_cols=24 Identities=29% Similarity=0.909 Sum_probs=15.1
Q ss_pred cccHhhHHHHhccCCCCCcCCCCCC
Q 004587 709 LFCNPCVQKVTESRHRKCPGCAASF 733 (743)
Q Consensus 709 ~fC~~C~~~~~~~~~~~Cp~c~~~~ 733 (743)
++|..|-.. +....++||.||.++
T Consensus 3 ~~Cp~Cg~~-~~~~~~fC~~CG~~L 26 (26)
T PF13248_consen 3 MFCPNCGAE-IDPDAKFCPNCGAKL 26 (26)
T ss_pred CCCcccCCc-CCcccccChhhCCCC
Confidence 356666663 344567788888764
No 263
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=91.71 E-value=17 Score=37.00 Aligned_cols=13 Identities=31% Similarity=0.524 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHhh
Q 004587 674 IIEELQQELREYR 686 (743)
Q Consensus 674 ~~~~l~~e~~~l~ 686 (743)
-+..|...++.+.
T Consensus 272 Ei~~Lk~~~~~Le 284 (312)
T smart00787 272 EIEKLKEQLKLLQ 284 (312)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555444443
No 264
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=91.60 E-value=0.13 Score=38.49 Aligned_cols=47 Identities=23% Similarity=0.632 Sum_probs=21.4
Q ss_pred ccccccccccCC----ceec---cCcccccHhhHHHHhccCCCCCcCCCCCCCC
Q 004587 689 LKCSICLERPKE----VVIT---KCYHLFCNPCVQKVTESRHRKCPGCAASFSP 735 (743)
Q Consensus 689 ~~C~iC~~~~~~----~~~~---~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~ 735 (743)
..|.||++..-- -++. .|+-..|..|..--.+..+..||.|++++..
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 589999986532 1333 6888889999987777777889999988753
No 265
>PRK11281 hypothetical protein; Provisional
Probab=91.54 E-value=39 Score=40.89 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 004587 510 DMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQA 560 (743)
Q Consensus 510 el~~~~~~l~~~~~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~el~~l 560 (743)
..-..|..+.+.+......++.+..+....++.+..+......++.+++-+
T Consensus 282 ~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l 332 (1113)
T PRK11281 282 QELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVL 332 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334556677777777777777777777777777777766666666666554
No 266
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.54 E-value=23 Score=38.18 Aligned_cols=19 Identities=16% Similarity=0.410 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004587 463 EAEIADMRQKLEAFKRDMV 481 (743)
Q Consensus 463 e~~i~~l~~~l~~~~~~~~ 481 (743)
..++..+...+..+..++.
T Consensus 80 ~~~l~~l~~~~~~l~a~~~ 98 (423)
T TIGR01843 80 EADAAELESQVLRLEAEVA 98 (423)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333
No 267
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.50 E-value=4.6 Score=41.18 Aligned_cols=8 Identities=0% Similarity=-0.346 Sum_probs=2.7
Q ss_pred CcCCCCCC
Q 004587 726 CPGCAASF 733 (743)
Q Consensus 726 Cp~c~~~~ 733 (743)
+++.+-.+
T Consensus 268 y~i~~~~I 275 (314)
T PF04111_consen 268 YKIDKDKI 275 (314)
T ss_dssp S-ECTTEE
T ss_pred eeccCCcc
Confidence 44433333
No 268
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.45 E-value=19 Score=37.11 Aligned_cols=17 Identities=24% Similarity=0.200 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhhhh
Q 004587 653 EDLEMGRRKVLRLQAQT 669 (743)
Q Consensus 653 ~~~~~l~~~~~~l~~~~ 669 (743)
.++..++.++..|+...
T Consensus 276 ~Ev~~Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 276 SEVKRLKAKVDALEKLT 292 (325)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555554443
No 269
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=91.35 E-value=22 Score=37.63 Aligned_cols=84 Identities=15% Similarity=0.187 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004587 475 AFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMME 554 (743)
Q Consensus 475 ~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~el~~~~~~l~~~~~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~ 554 (743)
.+...+.....++....+++.+|.+++..+.+.+..+.-++..+..-+..+.+.-..+..+...++.+|..++......+
T Consensus 216 s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~Eae 295 (596)
T KOG4360|consen 216 SGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAE 295 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444455555555555556655555555555555554444444444555555555555555555544444444
Q ss_pred HHHH
Q 004587 555 SEIQ 558 (743)
Q Consensus 555 ~el~ 558 (743)
.++.
T Consensus 296 eELk 299 (596)
T KOG4360|consen 296 EELK 299 (596)
T ss_pred HHHH
Confidence 4444
No 270
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=91.35 E-value=20 Score=37.33 Aligned_cols=12 Identities=25% Similarity=0.576 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 004587 31 NIVSNILAAVDN 42 (743)
Q Consensus 31 ~~~~~~~~~~~~ 42 (743)
.+-.+|+.++++
T Consensus 51 Tlsed~ysTldn 62 (527)
T PF15066_consen 51 TLSEDIYSTLDN 62 (527)
T ss_pred hhhHHHHhhhhh
Confidence 333333433333
No 271
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=91.28 E-value=0.1 Score=60.32 Aligned_cols=46 Identities=28% Similarity=0.678 Sum_probs=33.1
Q ss_pred ccccccccccC---CceeccCcccccHhhHHHHhccC---------CCCCcCCCCCCC
Q 004587 689 LKCSICLERPK---EVVITKCYHLFCNPCVQKVTESR---------HRKCPGCAASFS 734 (743)
Q Consensus 689 ~~C~iC~~~~~---~~~~~~Cgh~fC~~C~~~~~~~~---------~~~Cp~c~~~~~ 734 (743)
-.|.||+..-- ..+.+.|||+|-..|+.+.+.+| ...||+|..++.
T Consensus 3487 DmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3487 DMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred ceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 36777776432 23678999999999998876643 235999987764
No 272
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.23 E-value=0.91 Score=45.51 Aligned_cols=45 Identities=27% Similarity=0.482 Sum_probs=37.2
Q ss_pred cccccccccCCc----eeccCcccccHhhHHHHhccCCCCCcCCCCCCCC
Q 004587 690 KCSICLERPKEV----VITKCYHLFCNPCVQKVTESRHRKCPGCAASFSP 735 (743)
Q Consensus 690 ~C~iC~~~~~~~----~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~ 735 (743)
.|.||+..++.. --+.|||.+-..|+..|+.+ .++||.|+..+..
T Consensus 198 sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~-~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 198 SLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT-KRKLPSCRRELPK 246 (465)
T ss_pred hhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH-HHHhHHHHhhhhh
Confidence 799998877653 35689999999999999987 6789999977654
No 273
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=91.18 E-value=5.4 Score=30.31 Aligned_cols=47 Identities=15% Similarity=0.199 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 004587 495 EAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQ 541 (743)
Q Consensus 495 ~~l~~e~~~l~~~~~el~~~~~~l~~~~~~~~~~~~~l~~e~~~~~~ 541 (743)
..+...|..+...++++...+..+......+..++..+..+......
T Consensus 14 ~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~ 60 (72)
T PF06005_consen 14 QQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQE 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444443333
No 274
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=90.83 E-value=32 Score=38.59 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 004587 498 LSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVL 534 (743)
Q Consensus 498 ~~e~~~l~~~~~el~~~~~~l~~~~~~~~~~~~~l~~ 534 (743)
...+.+..+..+.++..+..|..-+....+++.++..
T Consensus 440 q~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~ 476 (861)
T PF15254_consen 440 QNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRK 476 (861)
T ss_pred HHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444333
No 275
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=90.61 E-value=15 Score=34.57 Aligned_cols=61 Identities=8% Similarity=0.041 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 526 DDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQ 586 (743)
Q Consensus 526 ~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~el~~l~~~l~~~~~~~~~le~~~~~l~~~l~ 586 (743)
...+..+..+++.+...+.++......+-.....+..-+..++..-..+...+......+.
T Consensus 68 ~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~ 128 (207)
T PF05010_consen 68 EAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLK 128 (207)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444433333333333333333
No 276
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=90.40 E-value=20 Score=35.64 Aligned_cols=54 Identities=22% Similarity=0.171 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 603 QKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLE 656 (743)
Q Consensus 603 ~~~~~e~~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 656 (743)
...+.+....+.+++..+............-.......+......+..+.....
T Consensus 184 ~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~ 237 (264)
T PF06008_consen 184 RDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQN 237 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333333333333333333333333333333333
No 277
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=90.39 E-value=0.13 Score=30.09 Aligned_cols=12 Identities=33% Similarity=0.938 Sum_probs=7.3
Q ss_pred CCCCcCCCCCCC
Q 004587 723 HRKCPGCAASFS 734 (743)
Q Consensus 723 ~~~Cp~c~~~~~ 734 (743)
...||.||..|.
T Consensus 14 ~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 14 AKFCPHCGYDFE 25 (26)
T ss_pred cCcCCCCCCCCc
Confidence 345777776664
No 278
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=90.36 E-value=0.28 Score=42.78 Aligned_cols=18 Identities=39% Similarity=1.106 Sum_probs=15.8
Q ss_pred ccccccccccCCceeccC
Q 004587 689 LKCSICLERPKEVVITKC 706 (743)
Q Consensus 689 ~~C~iC~~~~~~~~~~~C 706 (743)
.+||||++..-+.|.|-|
T Consensus 3 ~~CpICme~PHNAVLLlC 20 (162)
T PF07800_consen 3 VTCPICMEHPHNAVLLLC 20 (162)
T ss_pred ccCceeccCCCceEEEEe
Confidence 689999999999888855
No 279
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=90.21 E-value=0.15 Score=40.10 Aligned_cols=35 Identities=26% Similarity=0.662 Sum_probs=27.4
Q ss_pred ccccccccccCCceeccCcccccHhhHHHHhccCCCCCcCCCCCC
Q 004587 689 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASF 733 (743)
Q Consensus 689 ~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~ 733 (743)
-.|-+|......+ ||.||..|-.. ...|++||..+
T Consensus 45 ~~C~~CK~~v~q~-----g~~YCq~CAYk-----kGiCamCGKki 79 (90)
T PF10235_consen 45 SKCKICKTKVHQP-----GAKYCQTCAYK-----KGICAMCGKKI 79 (90)
T ss_pred ccccccccccccC-----CCccChhhhcc-----cCcccccCCee
Confidence 4788888766544 89999999664 35699999987
No 280
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=90.16 E-value=26 Score=36.43 Aligned_cols=33 Identities=6% Similarity=-0.026 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 004587 530 IKLVLEGVRARQLQDALLMDKHMMESEIQQANA 562 (743)
Q Consensus 530 ~~l~~e~~~~~~~~~~l~~e~~~l~~el~~l~~ 562 (743)
..+...+..+..-...+..........+..+..
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~ 248 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQ 248 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 344444444333333443333444444443333
No 281
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=90.13 E-value=0.21 Score=48.19 Aligned_cols=35 Identities=23% Similarity=0.497 Sum_probs=21.4
Q ss_pred eeccCcccccHhhHHHHhccC--------CCCCcCCCCCCCCC
Q 004587 702 VITKCYHLFCNPCVQKVTESR--------HRKCPGCAASFSPN 736 (743)
Q Consensus 702 ~~~~Cgh~fC~~C~~~~~~~~--------~~~Cp~c~~~~~~~ 736 (743)
.+.||||+.-..-..=|.... +..||+|...+...
T Consensus 374 aF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 374 AFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred ccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 456999975444444343321 23599999887553
No 282
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=89.82 E-value=14 Score=33.06 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 004587 550 KHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSA 597 (743)
Q Consensus 550 ~~~l~~el~~l~~~l~~~~~~~~~le~~~~~l~~~l~~l~~el~~~~~ 597 (743)
...+..++..+..+-..+...-+.++..+..+...+++...-..+..-
T Consensus 86 A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~v 133 (159)
T PF05384_consen 86 AHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGV 133 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444445555555555555444444433333333
No 283
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.81 E-value=47 Score=38.98 Aligned_cols=13 Identities=38% Similarity=0.437 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 004587 457 QRLAAAEAEIADM 469 (743)
Q Consensus 457 ~~l~~~e~~i~~l 469 (743)
.++...+..+..+
T Consensus 208 ~~l~~aE~~l~~f 220 (754)
T TIGR01005 208 KQSRDAEAEVAAY 220 (754)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 284
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.73 E-value=1.1 Score=37.37 Aligned_cols=22 Identities=32% Similarity=0.762 Sum_probs=14.1
Q ss_pred cccccccccc-cCCceeccCcccccHhh
Q 004587 688 ILKCSICLER-PKEVVITKCYHLFCNPC 714 (743)
Q Consensus 688 ~~~C~iC~~~-~~~~~~~~Cgh~fC~~C 714 (743)
..+|.||+.. |.+ .|||. |..|
T Consensus 65 datC~IC~KTKFAD----G~GH~-C~YC 87 (169)
T KOG3799|consen 65 DATCGICHKTKFAD----GCGHN-CSYC 87 (169)
T ss_pred Ccchhhhhhccccc----ccCcc-cchh
Confidence 4799999874 444 36764 4444
No 285
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=89.26 E-value=30 Score=35.94 Aligned_cols=11 Identities=45% Similarity=0.694 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 004587 468 DMRQKLEAFKR 478 (743)
Q Consensus 468 ~l~~~l~~~~~ 478 (743)
+++..++.+..
T Consensus 217 DWR~hleqm~~ 227 (359)
T PF10498_consen 217 DWRSHLEQMKQ 227 (359)
T ss_pred hHHHHHHHHHH
Confidence 44444444443
No 286
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=89.20 E-value=0.2 Score=48.71 Aligned_cols=42 Identities=26% Similarity=0.666 Sum_probs=34.7
Q ss_pred cccccccccc----CCceeccCcccccHhhHHHHhccCCCCCcCCCC
Q 004587 689 LKCSICLERP----KEVVITKCYHLFCNPCVQKVTESRHRKCPGCAA 731 (743)
Q Consensus 689 ~~C~iC~~~~----~~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~ 731 (743)
..||+|.... ..|..++|||..=..|+..+...+ ..||+|..
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 5699997743 446788999998889999988876 78999988
No 287
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=89.08 E-value=19 Score=33.47 Aligned_cols=50 Identities=22% Similarity=0.294 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004587 478 RDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDD 527 (743)
Q Consensus 478 ~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~el~~~~~~l~~~~~~~~~ 527 (743)
++|.-|..++++.+.++..-..+|-.+...+.+....+......+..+..
T Consensus 10 GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~ 59 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQD 59 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44555555566666666555555555555555544444444444444333
No 288
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=88.82 E-value=25 Score=34.45 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 004587 648 KKRLEEDLEMGRRKVLRLQAQ 668 (743)
Q Consensus 648 ~~~~~~~~~~l~~~~~~l~~~ 668 (743)
.+.++.++..|+..|..+...
T Consensus 184 nk~lq~QL~~L~~EL~~~kde 204 (246)
T PF00769_consen 184 NKRLQEQLKELKSELEQLKDE 204 (246)
T ss_dssp -HHHHHHHHHHHHHHHTTB-C
T ss_pred hHHHHHHHHHHHHHHHHHhhh
Confidence 334555666666666555443
No 290
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=88.74 E-value=43 Score=37.04 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 459 LAAAEAEIADMRQKLEAFKRDMVSL 483 (743)
Q Consensus 459 l~~~e~~i~~l~~~l~~~~~~~~~l 483 (743)
...++.++..++.++...+..+...
T Consensus 163 ~~fl~~ql~~~~~~L~~ae~~l~~f 187 (498)
T TIGR03007 163 QRFIDEQIKTYEKKLEAAENRLKAF 187 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555544444444
No 291
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=88.55 E-value=26 Score=34.32 Aligned_cols=41 Identities=29% Similarity=0.390 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 004587 455 SQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIE 495 (743)
Q Consensus 455 ~~~~l~~~e~~i~~l~~~l~~~~~~~~~l~~~l~~~~~e~~ 495 (743)
+..++...+.+....+..+......+..|..++..++.+..
T Consensus 10 le~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~ 50 (246)
T PF00769_consen 10 LEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAE 50 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445544444444444444444444444444333
No 292
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=88.49 E-value=0.53 Score=31.61 Aligned_cols=39 Identities=28% Similarity=0.638 Sum_probs=21.0
Q ss_pred ccccccccCCceec---cCcccccHhhHHHHhccCCC-CCcCC
Q 004587 691 CSICLERPKEVVIT---KCYHLFCNPCVQKVTESRHR-KCPGC 729 (743)
Q Consensus 691 C~iC~~~~~~~~~~---~Cgh~fC~~C~~~~~~~~~~-~Cp~c 729 (743)
|.+|.+....-+.= .|+=.+=..|+..++..+.. .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 66777765554332 37766678999999987654 59988
No 293
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=88.48 E-value=0.36 Score=47.74 Aligned_cols=47 Identities=26% Similarity=0.691 Sum_probs=35.6
Q ss_pred ccccccccccCC--ceec--cCcccccHhhHHHHhccCCCCCcCCCCCCCCC
Q 004587 689 LKCSICLERPKE--VVIT--KCYHLFCNPCVQKVTESRHRKCPGCAASFSPN 736 (743)
Q Consensus 689 ~~C~iC~~~~~~--~~~~--~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~ 736 (743)
..||+|...... .-++ ||||..|..|+.+.... ...||+||++...+
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~-~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDG-DGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhccccc-CCCCCccCCccccC
Confidence 589999987622 2333 68999999999998774 55699999776544
No 294
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=88.23 E-value=29 Score=34.58 Aligned_cols=17 Identities=0% Similarity=0.159 Sum_probs=6.6
Q ss_pred HHHhhHHHHHHHHHHHH
Q 004587 615 QVRGSLEESQSKVYKSR 631 (743)
Q Consensus 615 ~l~~~l~~l~~~~~~~~ 631 (743)
.||.+++.+......++
T Consensus 182 ~L~Kqm~~l~~eKr~Lq 198 (310)
T PF09755_consen 182 RLWKQMDKLEAEKRRLQ 198 (310)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444433333333
No 295
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=88.13 E-value=0.24 Score=35.34 Aligned_cols=41 Identities=17% Similarity=0.460 Sum_probs=25.4
Q ss_pred cccccccccccCCceeccCcccccHhhHHHHhcc-CCCCCcCCCCCCCC
Q 004587 688 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTES-RHRKCPGCAASFSP 735 (743)
Q Consensus 688 ~~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~-~~~~Cp~c~~~~~~ 735 (743)
.+.||.|+..|+.. .++.-|...-... +...||+|...+..
T Consensus 2 ~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~~~~~ 43 (54)
T PF05605_consen 2 SFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSSRVTD 43 (54)
T ss_pred CcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchhhhhh
Confidence 47999999955532 2344455544332 34679999876553
No 296
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=88.11 E-value=0.091 Score=51.79 Aligned_cols=46 Identities=20% Similarity=0.420 Sum_probs=31.5
Q ss_pred ccccccccc-ccCCce----eccCcccccHhhHHHHhcc------CCCCCcCCCCCC
Q 004587 688 ILKCSICLE-RPKEVV----ITKCYHLFCNPCVQKVTES------RHRKCPGCAASF 733 (743)
Q Consensus 688 ~~~C~iC~~-~~~~~~----~~~Cgh~fC~~C~~~~~~~------~~~~Cp~c~~~~ 733 (743)
...|.+|+. .|+-.. .-.||++||..|....+.. ..+.|+.|-..+
T Consensus 168 a~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~CF~el 224 (288)
T KOG1729|consen 168 ATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLSTKPIRVCDICFEEL 224 (288)
T ss_pred ceecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccCCCCceecHHHHHHH
Confidence 369999999 665432 2379999999998874322 123688885444
No 297
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=88.04 E-value=0.073 Score=43.50 Aligned_cols=46 Identities=24% Similarity=0.527 Sum_probs=14.5
Q ss_pred cccccccccc--CCceeccC--cccc--cHhhHHHHhccCCCCCcCCCCCCC
Q 004587 689 LKCSICLERP--KEVVITKC--YHLF--CNPCVQKVTESRHRKCPGCAASFS 734 (743)
Q Consensus 689 ~~C~iC~~~~--~~~~~~~C--gh~f--C~~C~~~~~~~~~~~Cp~c~~~~~ 734 (743)
-.|++|.... .++....| ||+| |.-=.-.+.....+.||+|+..+-
T Consensus 15 E~C~~C~~~i~~~~~~~~~C~~GH~w~RC~lT~l~i~~~~~r~C~~C~~~~l 66 (99)
T PF12660_consen 15 EKCPICGAPIPFDDLDEAQCENGHVWPRCALTFLPIQTPGVRVCPVCGRRAL 66 (99)
T ss_dssp --------------SSEEE-TTS-EEEB-SSS-SBS-SS-EEE-TTT--EEE
T ss_pred ccccccccccccCCcCEeECCCCCEEeeeeeeeeeeccCCeeEcCCCCCEEe
Confidence 4899998854 55544545 8888 543333333444567999987653
No 298
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=88.00 E-value=8.4 Score=35.61 Aligned_cols=74 Identities=16% Similarity=0.196 Sum_probs=54.1
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004587 595 NSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVLRLQAQ 668 (743)
Q Consensus 595 ~~~~l~~~~~~~~e~~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~ 668 (743)
++..+..++.++.+...+...+...+..++..+...+.++..+..+...+....+.+..++..++.+++.|...
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 33445556666666666777777777777777777777777777777777777788888888888888887765
No 299
>PF08882 Acetone_carb_G: Acetone carboxylase gamma subunit; InterPro: IPR014979 Acetone carboxylase is the key enzyme of bacterial acetone metabolism, catalysing the condensation of acetone and CO2 to form acetoacetate [] according to the following reaction: CH3COCH3 + CO2 + ATP = CH3COCH2COO- + AMP + 2P(i) + H+ It has the subunit composition: (alpha(2)beta(2)gamma(2) multimers of 85kDa, 78kDa, and 20kDa subunits). It is expressed to high levels (17 to 25% of soluble protein) in cells grown with acetone as the carbon source but are not present at detectable levels in cells grown with other carbon sources []. Acetone carboxylase may enable Helicobacter pylori to survive off acetone in the stomach of humans and other mammals where it is the etiological agent of peptic ulcer disease []. This entry represents the family of gamma subunit-related acetone carboxylase proteins.
Probab=87.86 E-value=0.15 Score=41.27 Aligned_cols=17 Identities=29% Similarity=0.800 Sum_probs=11.5
Q ss_pred CCCcCCCCCCCCCCCcC
Q 004587 724 RKCPGCAASFSPNDVKP 740 (743)
Q Consensus 724 ~~Cp~c~~~~~~~~~~~ 740 (743)
..||.|+.-+....+.+
T Consensus 75 yyCP~Cgt~levE~~~P 91 (112)
T PF08882_consen 75 YYCPGCGTQLEVEAPPP 91 (112)
T ss_pred EECCCCcceeEEccCCC
Confidence 36999998765554433
No 300
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=87.17 E-value=1.4 Score=43.99 Aligned_cols=35 Identities=6% Similarity=0.240 Sum_probs=13.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 545 ALLMDKHMMESEIQQANASLNFFDMKAARIENQLR 579 (743)
Q Consensus 545 ~l~~e~~~l~~el~~l~~~l~~~~~~~~~le~~~~ 579 (743)
.+...+..+...+..++..+....-.+..++.+++
T Consensus 116 ~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~ 150 (326)
T PF04582_consen 116 DLQSSVSALSTDVSNLKSDVSTQALNITDLESRVK 150 (326)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHH
Confidence 33333333444444444444443333434333333
No 301
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=87.13 E-value=8.8 Score=35.50 Aligned_cols=28 Identities=29% Similarity=0.550 Sum_probs=10.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004587 485 DALKSKNEEIEAYLSEIETIGQSYDDMQ 512 (743)
Q Consensus 485 ~~l~~~~~e~~~l~~e~~~l~~~~~el~ 512 (743)
..+.+...+...+..+++.+...+++.+
T Consensus 142 ekl~E~~~EkeeL~~eleele~e~ee~~ 169 (290)
T COG4026 142 EKLEELQKEKEELLKELEELEAEYEEVQ 169 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 302
>PRK04023 DNA polymerase II large subunit; Validated
Probab=86.94 E-value=0.31 Score=55.35 Aligned_cols=47 Identities=21% Similarity=0.390 Sum_probs=33.0
Q ss_pred cccccccccccCCceeccCcc-----cccHhhHHHHhccCCCCCcCCCCCCCCCC
Q 004587 688 ILKCSICLERPKEVVITKCYH-----LFCNPCVQKVTESRHRKCPGCAASFSPND 737 (743)
Q Consensus 688 ~~~C~iC~~~~~~~~~~~Cgh-----~fC~~C~~~~~~~~~~~Cp~c~~~~~~~~ 737 (743)
...|+-|+........-.||. .||..|-.... ...||.|+.......
T Consensus 626 ~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~~~---~y~CPKCG~El~~~s 677 (1121)
T PRK04023 626 RRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIEVE---EDECEKCGREPTPYS 677 (1121)
T ss_pred CccCCCCCCcCCcccCCCCCCCCCcceeCccccCcCC---CCcCCCCCCCCCccc
Confidence 469999998754444446984 48999955432 356999998876544
No 303
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=86.92 E-value=58 Score=36.58 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004587 459 LAAAEAEIADMRQKLEA 475 (743)
Q Consensus 459 l~~~e~~i~~l~~~l~~ 475 (743)
+..+..+...+..+++.
T Consensus 177 L~~l~~~~~~~~~eld~ 193 (563)
T TIGR00634 177 LKDRQQKEQELAQRLDF 193 (563)
T ss_pred HHHHHhhhHHHHHHHHH
Confidence 33333333333333333
No 304
>PRK10884 SH3 domain-containing protein; Provisional
Probab=86.63 E-value=17 Score=34.40 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004587 457 QRLAAAEAEIADMRQKLEAFK 477 (743)
Q Consensus 457 ~~l~~~e~~i~~l~~~l~~~~ 477 (743)
..++.++.++..++.++....
T Consensus 93 ~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555554444433
No 305
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=86.58 E-value=0.43 Score=29.92 Aligned_cols=10 Identities=40% Similarity=0.873 Sum_probs=7.7
Q ss_pred CCCCcCCCCC
Q 004587 723 HRKCPGCAAS 732 (743)
Q Consensus 723 ~~~Cp~c~~~ 732 (743)
.-.||+|+.+
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 4569999875
No 306
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=86.55 E-value=27 Score=32.29 Aligned_cols=27 Identities=33% Similarity=0.530 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 004587 508 YDDMQTQNQQLLQQITERDDYNIKLVL 534 (743)
Q Consensus 508 ~~el~~~~~~l~~~~~~~~~~~~~l~~ 534 (743)
++.++-++..+...+.+...++.++..
T Consensus 44 FeqLkien~~l~~kIeERn~eL~~Lk~ 70 (177)
T PF13870_consen 44 FEQLKIENQQLNEKIEERNKELLKLKK 70 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 307
>PF14353 CpXC: CpXC protein
Probab=86.44 E-value=0.43 Score=41.49 Aligned_cols=48 Identities=19% Similarity=0.278 Sum_probs=26.8
Q ss_pred ccccccccccCCceeccCcccccHhhHHHHhccC--CCCCcCCCCCCCCC
Q 004587 689 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESR--HRKCPGCAASFSPN 736 (743)
Q Consensus 689 ~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~~--~~~Cp~c~~~~~~~ 736 (743)
++||.|+..|.-.+...-.=..=..=....+... ...||.||..|.-.
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~ 51 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLE 51 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecC
Confidence 6899999888765433222111122233333221 24699999988543
No 308
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=86.35 E-value=20 Score=39.00 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 004587 469 MRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETI 504 (743)
Q Consensus 469 l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l 504 (743)
+...++.++.++..|...+.+++.++..|..+++.+
T Consensus 427 ~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~ 462 (652)
T COG2433 427 LEETVERLEEENSELKRELEELKREIEKLESELERF 462 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 309
>PF15616 TerY-C: TerY-C metal binding domain
Probab=86.32 E-value=0.32 Score=41.47 Aligned_cols=43 Identities=26% Similarity=0.392 Sum_probs=31.0
Q ss_pred hhccccccccccccCCceeccCcccccHhhHHHHhccCCCCCcCCCCCCC
Q 004587 685 YREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 734 (743)
Q Consensus 685 l~~~~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~ 734 (743)
|...+.||.|+..+--.+. .||++||.+=- ....||-|+....
T Consensus 74 L~g~PgCP~CGn~~~fa~C-~CGkl~Ci~g~------~~~~CPwCg~~g~ 116 (131)
T PF15616_consen 74 LIGAPGCPHCGNQYAFAVC-GCGKLFCIDGE------GEVTCPWCGNEGS 116 (131)
T ss_pred hcCCCCCCCCcChhcEEEe-cCCCEEEeCCC------CCEECCCCCCeee
Confidence 4455899999987665555 89999996532 2456999997643
No 310
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=86.18 E-value=0.42 Score=51.92 Aligned_cols=44 Identities=20% Similarity=0.549 Sum_probs=33.8
Q ss_pred cccccccccccCCc--eeccCcccccHhhHHHHhccCCCCCcC-CCCC
Q 004587 688 ILKCSICLERPKEV--VITKCYHLFCNPCVQKVTESRHRKCPG-CAAS 732 (743)
Q Consensus 688 ~~~C~iC~~~~~~~--~~~~Cgh~fC~~C~~~~~~~~~~~Cp~-c~~~ 732 (743)
.+.|.+|+-..+.. +...|||+.-.+|...|+.++. .||. ||..
T Consensus 1028 ~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd-~CpsGCGC~ 1074 (1081)
T KOG0309|consen 1028 TFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGD-VCPSGCGCH 1074 (1081)
T ss_pred eeeeeeEeeEeeccchhhccccccccHHHHHHHHhcCC-cCCCCCCcC
Confidence 46788888766554 4558999999999999999765 5986 5543
No 311
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=86.11 E-value=42 Score=34.15 Aligned_cols=14 Identities=21% Similarity=0.392 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 004587 647 AKKRLEEDLEMGRR 660 (743)
Q Consensus 647 ~~~~~~~~~~~l~~ 660 (743)
++..+...+..++.
T Consensus 272 Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 272 EIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 312
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=85.74 E-value=0.36 Score=56.34 Aligned_cols=49 Identities=22% Similarity=0.558 Sum_probs=33.6
Q ss_pred ccccccccccCCceeccCccc-----ccHhhHHHHhcc--CCCCCcCCCCCCCCCC
Q 004587 689 LKCSICLERPKEVVITKCYHL-----FCNPCVQKVTES--RHRKCPGCAASFSPND 737 (743)
Q Consensus 689 ~~C~iC~~~~~~~~~~~Cgh~-----fC~~C~~~~~~~--~~~~Cp~c~~~~~~~~ 737 (743)
..||-|+..-....+-.||+. +|..|-...... ....||.|+.++....
T Consensus 668 rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~ 723 (1337)
T PRK14714 668 RRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQ 723 (1337)
T ss_pred EECCCCCCccccccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccc
Confidence 799999985433444469855 499998865332 1347999998876543
No 313
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=85.67 E-value=0.29 Score=46.88 Aligned_cols=13 Identities=15% Similarity=0.358 Sum_probs=8.1
Q ss_pred cccccccccccCC
Q 004587 688 ILKCSICLERPKE 700 (743)
Q Consensus 688 ~~~C~iC~~~~~~ 700 (743)
.+.|++|...|..
T Consensus 161 a~~C~~C~K~YvS 173 (279)
T KOG2462|consen 161 AFSCKYCGKVYVS 173 (279)
T ss_pred cccCCCCCceeee
Confidence 4566666666655
No 314
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=85.66 E-value=37 Score=33.11 Aligned_cols=38 Identities=34% Similarity=0.323 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004587 633 TLMELQIELVKERFAKKRLEEDLEMGRRKVLRLQAQTE 670 (743)
Q Consensus 633 ~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 670 (743)
....+...+...+..+..++.++..|+..+..|.....
T Consensus 187 ~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 187 ENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44455566667777777777777777777777665543
No 315
>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.46 E-value=0.13 Score=47.30 Aligned_cols=56 Identities=18% Similarity=0.304 Sum_probs=28.4
Q ss_pred hccccccccccccCCc-eeccCcccccHhhHH--HHhcc--C---CCCCcCCCCCCCCCCCcCc
Q 004587 686 REILKCSICLERPKEV-VITKCYHLFCNPCVQ--KVTES--R---HRKCPGCAASFSPNDVKPV 741 (743)
Q Consensus 686 ~~~~~C~iC~~~~~~~-~~~~Cgh~fC~~C~~--~~~~~--~---~~~Cp~c~~~~~~~~~~~~ 741 (743)
...+.||||...|... +.+.-+.+.-.+--. .+... + ...||+|.-..-.+|+..|
T Consensus 17 kk~ieCPvC~tkFkkeev~tgsiRiiagDld~~lkygninP~fY~VvvCP~C~yAaf~sDFe~I 80 (267)
T COG1655 17 KKTIECPVCNTKFKKEEVKTGSIRIIAGDLDFFLKYGNINPYFYDVVVCPICYYAAFKSDFEKI 80 (267)
T ss_pred hceeccCcccchhhhhheeccceeEecccccceeeccccCCceeEEEEcchhhHHHhhHHHHhh
Confidence 3468999999998653 333332222111100 11010 0 1259999876555665443
No 316
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.27 E-value=51 Score=34.40 Aligned_cols=26 Identities=15% Similarity=0.182 Sum_probs=11.1
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhhhhh
Q 004587 369 TLLASSADQVAEIHKLQAMVQDLTDS 394 (743)
Q Consensus 369 ~l~~~~~~~~~~~~~l~~~i~~l~~~ 394 (743)
.....+...+.....|..++..+-.+
T Consensus 356 a~~eei~~~eel~~~Lrsele~lp~d 381 (521)
T KOG1937|consen 356 AVDEEIESNEELAEKLRSELEKLPDD 381 (521)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCCch
Confidence 33333333333444455555444443
No 317
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=85.22 E-value=0.53 Score=45.55 Aligned_cols=48 Identities=6% Similarity=-0.143 Sum_probs=37.9
Q ss_pred HHhhccccccccccccCCceeccCccc-ccHhhHHHHhccCCCCCcCCCCCC
Q 004587 683 REYREILKCSICLERPKEVVITKCYHL-FCNPCVQKVTESRHRKCPGCAASF 733 (743)
Q Consensus 683 ~~l~~~~~C~iC~~~~~~~~~~~Cgh~-fC~~C~~~~~~~~~~~Cp~c~~~~ 733 (743)
+.+...+.|.+|+......+..+|||- ||-.|..-. -...||+|....
T Consensus 338 ~~~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s---~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 338 NGLMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASAS---ASPTSSTCDHND 386 (394)
T ss_pred ccchhhcccccccCceeeeEeecCCcccChhhhhhcc---cCCccccccccc
Confidence 345556899999998888899999986 599998832 347899997654
No 318
>PHA02862 5L protein; Provisional
Probab=85.09 E-value=0.63 Score=39.73 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=32.5
Q ss_pred ccccccccccCCceeccCccc-----ccHhhHHHHhccC-CCCCcCCCCCCC
Q 004587 689 LKCSICLERPKEVVITKCYHL-----FCNPCVQKVTESR-HRKCPGCAASFS 734 (743)
Q Consensus 689 ~~C~iC~~~~~~~~~~~Cgh~-----fC~~C~~~~~~~~-~~~Cp~c~~~~~ 734 (743)
..|=||+....+. ..||+-. .=..|+.+|+... ...||.|+.++.
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 4799999886554 4677632 1359999998653 456999998874
No 319
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=85.09 E-value=29 Score=34.91 Aligned_cols=80 Identities=9% Similarity=0.122 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHH
Q 004587 531 KLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVR 610 (743)
Q Consensus 531 ~l~~e~~~~~~~~~~l~~e~~~l~~el~~l~~~l~~~~~~~~~le~~~~~l~~~l~~l~~el~~~~~~l~~~~~~~~e~~ 610 (743)
.+...+...+..|...+.....|.++-..+.-+++.++..+..+++.+-.+..++.....++...+...+.+..++..+.
T Consensus 81 ~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lr 160 (302)
T PF09738_consen 81 DLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELR 160 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555556666666666666666666666666665555555554444344333333333333333333
No 320
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.05 E-value=53 Score=34.36 Aligned_cols=43 Identities=21% Similarity=0.209 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004587 529 NIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKA 571 (743)
Q Consensus 529 ~~~l~~e~~~~~~~~~~l~~e~~~l~~el~~l~~~l~~~~~~~ 571 (743)
...+..+...+.+....+......++..+.+++..+....+..
T Consensus 356 ~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel 398 (493)
T KOG0804|consen 356 YELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKEL 398 (493)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444444444444444433333
No 321
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=84.92 E-value=0.95 Score=41.37 Aligned_cols=67 Identities=18% Similarity=0.431 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHhh--ccccccccccccCCce-eccCcccccHhhHHHHhccCCCCCcCCCCCCCCCCCcCc
Q 004587 673 SIIEELQQELREYR--EILKCSICLERPKEVV-ITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPV 741 (743)
Q Consensus 673 ~~~~~l~~e~~~l~--~~~~C~iC~~~~~~~~-~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~ 741 (743)
..+..|..-+.+.- +...|.+|+...-..+ .-.||-.+-.+|+.+++.. ...||.|+-.|.. .++++
T Consensus 164 ralaELe~YL~s~y~dnlk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~h-~I~~v 233 (235)
T KOG4718|consen 164 RALAELEFYLSSNYADNLKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWTH-PIRRV 233 (235)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccCc-ccccc
Confidence 44555555544433 4569999997544332 3356655667999999886 4569999877743 24443
No 322
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=84.80 E-value=75 Score=35.86 Aligned_cols=62 Identities=13% Similarity=0.095 Sum_probs=35.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 597 ANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMG 658 (743)
Q Consensus 597 ~~l~~~~~~~~e~~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l 658 (743)
-+..+++.++.++-..+..++-.++..+++..-+.-.+..-..++..++.-...++.-+..+
T Consensus 494 ~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~l 555 (861)
T PF15254_consen 494 IETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKL 555 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666666666666666666666555555555555554444444444433
No 323
>PF12773 DZR: Double zinc ribbon
Probab=84.59 E-value=0.87 Score=31.82 Aligned_cols=39 Identities=26% Similarity=0.686 Sum_probs=22.4
Q ss_pred ccccccccCCceeccCcccccHhhHHHHh--ccCCCCCcCCCCCCCC
Q 004587 691 CSICLERPKEVVITKCYHLFCNPCVQKVT--ESRHRKCPGCAASFSP 735 (743)
Q Consensus 691 C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~--~~~~~~Cp~c~~~~~~ 735 (743)
||-|+..... +-.||..|-..+. ......||.|+..+..
T Consensus 1 Cp~Cg~~~~~------~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~ 41 (50)
T PF12773_consen 1 CPHCGTPNPD------DAKFCPHCGTPLPPPDQSKKICPNCGAENPP 41 (50)
T ss_pred CCCcCCcCCc------cccCChhhcCChhhccCCCCCCcCCcCCCcC
Confidence 5666655332 3556666666665 3334568888776543
No 324
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=84.39 E-value=35 Score=31.78 Aligned_cols=48 Identities=15% Similarity=0.296 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004587 458 RLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIG 505 (743)
Q Consensus 458 ~l~~~e~~i~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~ 505 (743)
+|..+..++.+.+.++..-..+|-.|..+++.....+......+..+.
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~ 58 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQ 58 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 355555555555555555555555555555555555554444444333
No 325
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=84.18 E-value=0.54 Score=40.86 Aligned_cols=29 Identities=28% Similarity=0.644 Sum_probs=23.7
Q ss_pred cccccHhhHHHHhccCCCCCcCCCCCCCCCCCc
Q 004587 707 YHLFCNPCVQKVTESRHRKCPGCAASFSPNDVK 739 (743)
Q Consensus 707 gh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~~~~ 739 (743)
.|-||..|-...... ||.|..++...+..
T Consensus 27 ~~~fC~kCG~~tI~~----Cp~C~~~IrG~y~v 55 (158)
T PF10083_consen 27 REKFCSKCGAKTITS----CPNCSTPIRGDYHV 55 (158)
T ss_pred HHHHHHHhhHHHHHH----CcCCCCCCCCceec
Confidence 478999999998764 99999999776543
No 326
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=83.93 E-value=0.58 Score=38.74 Aligned_cols=13 Identities=38% Similarity=1.091 Sum_probs=8.7
Q ss_pred CCCcCCCCCCCCC
Q 004587 724 RKCPGCAASFSPN 736 (743)
Q Consensus 724 ~~Cp~c~~~~~~~ 736 (743)
..||.||..|...
T Consensus 27 ivCP~CG~~~~~~ 39 (108)
T PF09538_consen 27 IVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCCCccCcc
Confidence 3477777777554
No 327
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=83.64 E-value=37 Score=31.38 Aligned_cols=45 Identities=16% Similarity=0.034 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 004587 494 IEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVR 538 (743)
Q Consensus 494 ~~~l~~e~~~l~~~~~el~~~~~~l~~~~~~~~~~~~~l~~e~~~ 538 (743)
...+...|+.-...+..+.........-+......+..+..+...
T Consensus 51 n~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~ 95 (177)
T PF13870_consen 51 NQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELER 95 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333
No 328
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=83.31 E-value=35 Score=32.82 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=36.2
Q ss_pred cccccccccccCCcee-ccCcccccHhhHHHHhccC-CCCCcCCCCC
Q 004587 688 ILKCSICLERPKEVVI-TKCYHLFCNPCVQKVTESR-HRKCPGCAAS 732 (743)
Q Consensus 688 ~~~C~iC~~~~~~~~~-~~Cgh~fC~~C~~~~~~~~-~~~Cp~c~~~ 732 (743)
.+.||+-+.++.+|++ ..|||+|=.+-+..+.... ...||+-|..
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 5799999999999974 6899999999999887642 3469985544
No 329
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=83.12 E-value=24 Score=28.86 Aligned_cols=11 Identities=36% Similarity=0.456 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 004587 459 LAAAEAEIADM 469 (743)
Q Consensus 459 l~~~e~~i~~l 469 (743)
+..++..+...
T Consensus 18 La~Le~slE~~ 28 (107)
T PF09304_consen 18 LASLERSLEDE 28 (107)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 330
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=82.77 E-value=0.85 Score=50.69 Aligned_cols=45 Identities=38% Similarity=0.840 Sum_probs=34.9
Q ss_pred ccccccccccccCC--cee--ccCcccccHhhHHHHhccC------CCCCcCCCC
Q 004587 687 EILKCSICLERPKE--VVI--TKCYHLFCNPCVQKVTESR------HRKCPGCAA 731 (743)
Q Consensus 687 ~~~~C~iC~~~~~~--~~~--~~Cgh~fC~~C~~~~~~~~------~~~Cp~c~~ 731 (743)
....|.||.+.++. |++ ..|+|+|=..||..|..++ .-.||.|..
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 35899999998755 332 3799999999999997653 236999984
No 331
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=82.74 E-value=67 Score=33.74 Aligned_cols=18 Identities=11% Similarity=0.115 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 004587 419 RDLEYKAWAHVHSLKSSL 436 (743)
Q Consensus 419 ~~~~~~~~~~~~~l~~~l 436 (743)
+.++..++...+.|...+
T Consensus 343 Eeei~~L~~~~d~L~~q~ 360 (622)
T COG5185 343 EEEIKALQSNIDELHKQL 360 (622)
T ss_pred HHHHHHHHhhHHHHHHHH
Confidence 344444444444444444
No 332
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=82.69 E-value=41 Score=36.68 Aligned_cols=34 Identities=24% Similarity=0.436 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 004587 459 LAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNE 492 (743)
Q Consensus 459 l~~~e~~i~~l~~~l~~~~~~~~~l~~~l~~~~~ 492 (743)
+..++.++..|+..+..++..+..|..++..+..
T Consensus 431 ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 431 VERLEEENSELKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444443333
No 333
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=82.63 E-value=50 Score=32.16 Aligned_cols=72 Identities=21% Similarity=0.218 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 004587 557 IQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVY 628 (743)
Q Consensus 557 l~~l~~~l~~~~~~~~~le~~~~~l~~~l~~l~~el~~~~~~l~~~~~~~~e~~~~~~~l~~~l~~l~~~~~ 628 (743)
+..++..+.+....+.+-+.++..|..++.++.++|=.-.-......-.+.++.++|..|+.-++.+...+.
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ 141 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLA 141 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 444455555555555555666666666777776666332222222333355555555555555544444443
No 334
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.60 E-value=0.82 Score=40.20 Aligned_cols=32 Identities=22% Similarity=0.572 Sum_probs=25.2
Q ss_pred ccCcccccHhhHHHHhcc----CC------CCCcCCCCCCCC
Q 004587 704 TKCYHLFCNPCVQKVTES----RH------RKCPGCAASFSP 735 (743)
Q Consensus 704 ~~Cgh~fC~~C~~~~~~~----~~------~~Cp~c~~~~~~ 735 (743)
..||..|-.-|+..|++. |+ ..||.|..|+..
T Consensus 188 ~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 188 IQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred cccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 479999999999999763 22 259999988754
No 335
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=82.43 E-value=0.86 Score=31.32 Aligned_cols=39 Identities=33% Similarity=0.766 Sum_probs=23.3
Q ss_pred ccccccccCC--ceeccCccc-----ccHhhHHHHhcc-CCCCCcCC
Q 004587 691 CSICLERPKE--VVITKCYHL-----FCNPCVQKVTES-RHRKCPGC 729 (743)
Q Consensus 691 C~iC~~~~~~--~~~~~Cgh~-----fC~~C~~~~~~~-~~~~Cp~c 729 (743)
|-||+..... |.+.||+=. .=..|+.+|+.. +...||+|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6688876543 578898622 134799999874 34569988
No 336
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=82.38 E-value=59 Score=32.83 Aligned_cols=21 Identities=14% Similarity=0.271 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004587 231 KSKSEVFKYQALFEKLQVEKD 251 (743)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~e~~ 251 (743)
+.++.|.+|+-++...+.++.
T Consensus 280 danrqisd~KfKl~KaEQeit 300 (302)
T PF09738_consen 280 DANRQISDYKFKLQKAEQEIT 300 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 345667777777666655543
No 337
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.08 E-value=0.6 Score=46.68 Aligned_cols=43 Identities=12% Similarity=0.150 Sum_probs=35.2
Q ss_pred ceeccCcccccHhhHHHHhccCCCCCcCCCCCCCCCCCcCcCC
Q 004587 701 VVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVYI 743 (743)
Q Consensus 701 ~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~~ 743 (743)
|.++|=||++...-+.+|.......||.-+..|...+...+|+
T Consensus 346 P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~~l~kvy~ 388 (389)
T KOG0396|consen 346 PHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYSELCKVYL 388 (389)
T ss_pred cccccCceeehhHHHHhhcccCCCcCCCCCccccHHHHHHHhc
Confidence 6778899999998888887655577999999998888777764
No 338
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=81.55 E-value=0.72 Score=38.18 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=19.5
Q ss_pred hccccccccccccCC----cee-ccCcccccHh
Q 004587 686 REILKCSICLERPKE----VVI-TKCYHLFCNP 713 (743)
Q Consensus 686 ~~~~~C~iC~~~~~~----~~~-~~Cgh~fC~~ 713 (743)
.....||-|+.+|.+ |++ -.||+.|=..
T Consensus 7 GtKR~Cp~CG~kFYDLnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 7 GTKRTCPSCGAKFYDLNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred CCcccCCCCcchhccCCCCCccCCCCCCccCcc
Confidence 344799999999955 553 3588877443
No 339
>PLN02189 cellulose synthase
Probab=81.43 E-value=1 Score=52.17 Aligned_cols=46 Identities=22% Similarity=0.624 Sum_probs=34.3
Q ss_pred ccccccccccCC----ceec---cCcccccHhhHHHHhccCCCCCcCCCCCCC
Q 004587 689 LKCSICLERPKE----VVIT---KCYHLFCNPCVQKVTESRHRKCPGCAASFS 734 (743)
Q Consensus 689 ~~C~iC~~~~~~----~~~~---~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~ 734 (743)
..|.||++.... -.+. -||--.|..|..---+..+..||.|++.+.
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 389999987532 1233 477778999996656666788999998876
No 340
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=81.36 E-value=0.87 Score=49.39 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=16.4
Q ss_pred cHhhHHHHhccCCCCCcCCCCCCCC
Q 004587 711 CNPCVQKVTESRHRKCPGCAASFSP 735 (743)
Q Consensus 711 C~~C~~~~~~~~~~~Cp~c~~~~~~ 735 (743)
|..|....--+++++||.|+.+.+.
T Consensus 1162 CkH~a~~~EIs~y~~CPLCHs~~~~ 1186 (1189)
T KOG2041|consen 1162 CKHRAHQHEISKYNCCPLCHSMESF 1186 (1189)
T ss_pred cccccccccccccccCccccChhhc
Confidence 4445544444567889999887643
No 341
>PRK00420 hypothetical protein; Validated
Probab=81.11 E-value=0.65 Score=38.48 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=8.3
Q ss_pred ccccccccccC
Q 004587 689 LKCSICLERPK 699 (743)
Q Consensus 689 ~~C~iC~~~~~ 699 (743)
-.||+|+.++.
T Consensus 24 ~~CP~Cg~pLf 34 (112)
T PRK00420 24 KHCPVCGLPLF 34 (112)
T ss_pred CCCCCCCCcce
Confidence 58999986554
No 342
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=81.08 E-value=0.67 Score=46.45 Aligned_cols=33 Identities=18% Similarity=0.496 Sum_probs=24.8
Q ss_pred cccccccccccCCc--eeccCcccccHhhHHHHhc
Q 004587 688 ILKCSICLERPKEV--VITKCYHLFCNPCVQKVTE 720 (743)
Q Consensus 688 ~~~C~iC~~~~~~~--~~~~Cgh~fC~~C~~~~~~ 720 (743)
...||||+-.|-.. .+.-|..++|..|+..+..
T Consensus 74 ~~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~~~ 108 (482)
T KOG2789|consen 74 KTECPICFLYYPSAKNLVRCCSETICGECFAPFGC 108 (482)
T ss_pred cccCceeeeecccccchhhhhccchhhhheecccC
Confidence 47999999766543 3446899999999887643
No 343
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=80.96 E-value=0.52 Score=52.32 Aligned_cols=48 Identities=17% Similarity=0.182 Sum_probs=34.5
Q ss_pred cccccccccccCC--ceeccCcccccHhhHHHHhccC-----CCCCcCCCCCCCC
Q 004587 688 ILKCSICLERPKE--VVITKCYHLFCNPCVQKVTESR-----HRKCPGCAASFSP 735 (743)
Q Consensus 688 ~~~C~iC~~~~~~--~~~~~Cgh~fC~~C~~~~~~~~-----~~~Cp~c~~~~~~ 735 (743)
...|..|.....+ .+...|||.||..|+..|.... .-+||+|+.....
T Consensus 229 ~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~~ 283 (889)
T KOG1356|consen 229 REMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKCNK 283 (889)
T ss_pred chhhhhhcccccceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhcCC
Confidence 4689999887665 3667999999999999996211 1258877655443
No 344
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=80.32 E-value=1 Score=44.29 Aligned_cols=30 Identities=13% Similarity=0.465 Sum_probs=17.1
Q ss_pred ccccccccccCCc--eeccCcccccHhhHHHHhc
Q 004587 689 LKCSICLERPKEV--VITKCYHLFCNPCVQKVTE 720 (743)
Q Consensus 689 ~~C~iC~~~~~~~--~~~~Cgh~fC~~C~~~~~~ 720 (743)
--||||++..+.. -.+.|-- |...+++.+.
T Consensus 16 ElCPVCGDkVSGYHYGLLTCES--CKGFFKRTVQ 47 (475)
T KOG4218|consen 16 ELCPVCGDKVSGYHYGLLTCES--CKGFFKRTVQ 47 (475)
T ss_pred cccccccCccccceeeeeehhh--hhhHHHHHhh
Confidence 4799999987654 2344432 4444444443
No 345
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=80.27 E-value=37 Score=29.11 Aligned_cols=55 Identities=11% Similarity=0.075 Sum_probs=29.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004587 612 SSVQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVLRLQ 666 (743)
Q Consensus 612 ~~~~l~~~l~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~ 666 (743)
.++.+-..+++.......++.++.++...+......+..+..-+..|..++..++
T Consensus 69 RId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 69 RIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444455555555555555555555555555555555555443
No 346
>PRK05978 hypothetical protein; Provisional
Probab=80.22 E-value=1 Score=39.50 Aligned_cols=32 Identities=25% Similarity=0.635 Sum_probs=22.9
Q ss_pred ccccccccccCCceeccCcccccHhhHHHHhccCCCCCcCCCCCCCCC
Q 004587 689 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPN 736 (743)
Q Consensus 689 ~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~ 736 (743)
..||-|++ ||.| ..+++. +..||.|+..|...
T Consensus 34 grCP~CG~----------G~LF-----~g~Lkv-~~~C~~CG~~~~~~ 65 (148)
T PRK05978 34 GRCPACGE----------GKLF-----RAFLKP-VDHCAACGEDFTHH 65 (148)
T ss_pred CcCCCCCC----------Cccc-----cccccc-CCCccccCCccccC
Confidence 68998886 6666 355554 35599999998664
No 347
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=80.01 E-value=56 Score=31.09 Aligned_cols=24 Identities=25% Similarity=0.174 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Q 004587 514 QNQQLLQQITERDDYNIKLVLEGV 537 (743)
Q Consensus 514 ~~~~l~~~~~~~~~~~~~l~~e~~ 537 (743)
++..+..+.+.+...+..|..+..
T Consensus 53 qL~q~etrnrdl~t~nqrl~~E~e 76 (333)
T KOG1853|consen 53 QLDQLETRNRDLETRNQRLTTEQE 76 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444443
No 348
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.90 E-value=0.91 Score=37.33 Aligned_cols=26 Identities=31% Similarity=0.736 Sum_probs=18.2
Q ss_pred ccccHhhHHHHhccCCCCCcCCCCCCCCCC
Q 004587 708 HLFCNPCVQKVTESRHRKCPGCAASFSPND 737 (743)
Q Consensus 708 h~fC~~C~~~~~~~~~~~Cp~c~~~~~~~~ 737 (743)
..||..|-...+.+ ||+|..++...+
T Consensus 28 eafcskcgeati~q----cp~csasirgd~ 53 (160)
T COG4306 28 EAFCSKCGEATITQ----CPICSASIRGDY 53 (160)
T ss_pred HHHHhhhchHHHhc----CCccCCcccccc
Confidence 45788887776553 888888776554
No 349
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=79.87 E-value=97 Score=33.76 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 636 ELQIELVKERFAKKRLEEDLEMGRRKV 662 (743)
Q Consensus 636 ~~~~~l~~~~~~~~~~~~~~~~l~~~~ 662 (743)
....++...+..+..++..+...+..+
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l 314 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433
No 350
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=79.83 E-value=0.98 Score=35.79 Aligned_cols=25 Identities=24% Similarity=0.699 Sum_probs=16.3
Q ss_pred eccCcccccHhhHHHHhccCCCCCcCCCCC
Q 004587 703 ITKCYHLFCNPCVQKVTESRHRKCPGCAAS 732 (743)
Q Consensus 703 ~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~ 732 (743)
.+.|||+|-.. ...++. =||.|+..
T Consensus 5 CtrCG~vf~~g-~~~il~----GCp~CG~n 29 (112)
T COG3364 5 CTRCGEVFDDG-SEEILS----GCPKCGCN 29 (112)
T ss_pred ecccccccccc-cHHHHc----cCccccch
Confidence 46899998765 333332 29999864
No 351
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=79.68 E-value=24 Score=26.60 Aligned_cols=38 Identities=13% Similarity=0.058 Sum_probs=14.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004587 520 QQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEI 557 (743)
Q Consensus 520 ~~~~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~el 557 (743)
..+...+..+..+..+...+...+..+-.+...+..++
T Consensus 19 rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~ 56 (69)
T PF14197_consen 19 RKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEEN 56 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444433333333333333333333
No 352
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=79.67 E-value=82 Score=32.75 Aligned_cols=41 Identities=15% Similarity=0.113 Sum_probs=18.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 004587 520 QQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQA 560 (743)
Q Consensus 520 ~~~~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~el~~l 560 (743)
..++.++..+..+......+....+.+..+.+.+...+..+
T Consensus 304 mr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~l 344 (502)
T KOG0982|consen 304 MRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEAL 344 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 34444444444444444444444444444444444444433
No 353
>PLN02436 cellulose synthase A
Probab=79.60 E-value=1.2 Score=51.50 Aligned_cols=46 Identities=22% Similarity=0.664 Sum_probs=34.3
Q ss_pred ccccccccccCCc----eec---cCcccccHhhHHHHhccCCCCCcCCCCCCC
Q 004587 689 LKCSICLERPKEV----VIT---KCYHLFCNPCVQKVTESRHRKCPGCAASFS 734 (743)
Q Consensus 689 ~~C~iC~~~~~~~----~~~---~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~ 734 (743)
..|.||++..-.. .+. -||-..|..|..---+..+..||.|++.+.
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 4899999875221 233 577778999997656666788999998875
No 354
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=79.43 E-value=0.59 Score=39.65 Aligned_cols=32 Identities=19% Similarity=0.563 Sum_probs=23.7
Q ss_pred ccccccccccCCceeccCcccccH-hhHHHHhcc
Q 004587 689 LKCSICLERPKEVVITKCYHLFCN-PCVQKVTES 721 (743)
Q Consensus 689 ~~C~iC~~~~~~~~~~~Cgh~fC~-~C~~~~~~~ 721 (743)
..|.||+ .++....+.||..+|. .|......+
T Consensus 119 ~fCaVCG-~~S~ysC~~CG~kyCsv~C~~~HneT 151 (156)
T KOG3362|consen 119 KFCAVCG-YDSKYSCVNCGTKYCSVRCLKTHNET 151 (156)
T ss_pred hhhhhcC-CCchhHHHhcCCceeechhhhhcccc
Confidence 4899999 5666667899998865 787765543
No 355
>PHA02768 hypothetical protein; Provisional
Probab=79.39 E-value=0.68 Score=32.68 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=24.5
Q ss_pred ccccccccccCCceeccCcccccHhhHHHHhccCCCCCcCCCCCCCC
Q 004587 689 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSP 735 (743)
Q Consensus 689 ~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~ 735 (743)
+.|+.|+..|.....+ =+| .+... ...+|+.|++.|..
T Consensus 6 y~C~~CGK~Fs~~~~L-~~H-------~r~H~-k~~kc~~C~k~f~~ 43 (55)
T PHA02768 6 YECPICGEIYIKRKSM-ITH-------LRKHN-TNLKLSNCKRISLR 43 (55)
T ss_pred cCcchhCCeeccHHHH-HHH-------HHhcC-CcccCCcccceecc
Confidence 5899999999865332 122 12111 34579999998864
No 356
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=78.51 E-value=69 Score=31.29 Aligned_cols=15 Identities=13% Similarity=0.042 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHh
Q 004587 420 DLEYKAWAHVHSLKS 434 (743)
Q Consensus 420 ~~~~~~~~~~~~l~~ 434 (743)
..+..+...+..+..
T Consensus 45 ~~i~~aP~~~~~l~~ 59 (240)
T PF12795_consen 45 KQIDQAPKEIRELQK 59 (240)
T ss_pred HHHHHhHHHHHHHHH
Confidence 333333333333333
No 357
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=78.50 E-value=1.2 Score=48.88 Aligned_cols=31 Identities=19% Similarity=0.397 Sum_probs=24.1
Q ss_pred ccccccccccCCc---e------eccCcccccHhhHHHHh
Q 004587 689 LKCSICLERPKEV---V------ITKCYHLFCNPCVQKVT 719 (743)
Q Consensus 689 ~~C~iC~~~~~~~---~------~~~Cgh~fC~~C~~~~~ 719 (743)
..|..|...|... + .-.||++||..|.....
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs 500 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRA 500 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCcc
Confidence 3699999999642 1 23799999999998764
No 358
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=78.35 E-value=72 Score=31.41 Aligned_cols=53 Identities=13% Similarity=-0.056 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 528 YNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRF 580 (743)
Q Consensus 528 ~~~~l~~e~~~~~~~~~~l~~e~~~l~~el~~l~~~l~~~~~~~~~le~~~~~ 580 (743)
.+..+..+...+...+..+..++..++....++...+......+..+..++..
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~ 95 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQ 95 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444333333
No 359
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=78.32 E-value=1e+02 Score=32.99 Aligned_cols=89 Identities=13% Similarity=0.158 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004587 454 ISQQRLAAAEAEIADMRQKLEAFKRDMVS-------LSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERD 526 (743)
Q Consensus 454 ~~~~~l~~~e~~i~~l~~~l~~~~~~~~~-------l~~~l~~~~~e~~~l~~e~~~l~~~~~el~~~~~~l~~~~~~~~ 526 (743)
.+.++++....++..++.++.....++.. |..+|..++.++..+.-+.+.+...+...-...+.+..+..+++
T Consensus 202 ~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~Ele 281 (596)
T KOG4360|consen 202 DCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELE 281 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44455555555555444444444433333 33333333333333333444444333333333444445555555
Q ss_pred HHHHHHHHHHHHHHHH
Q 004587 527 DYNIKLVLEGVRARQL 542 (743)
Q Consensus 527 ~~~~~l~~e~~~~~~~ 542 (743)
+...+.+.....++..
T Consensus 282 DkyAE~m~~~~EaeeE 297 (596)
T KOG4360|consen 282 DKYAECMQMLHEAEEE 297 (596)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555554444433
No 360
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=78.15 E-value=1 Score=49.43 Aligned_cols=23 Identities=22% Similarity=0.703 Sum_probs=16.9
Q ss_pred cHhhHHHHhccCC-------CCCcCCCCCC
Q 004587 711 CNPCVQKVTESRH-------RKCPGCAASF 733 (743)
Q Consensus 711 C~~C~~~~~~~~~-------~~Cp~c~~~~ 733 (743)
|..|-..+....+ ..||.|+-.+
T Consensus 154 C~~C~~EY~dP~nRRfHAQp~aCp~CGP~~ 183 (750)
T COG0068 154 CPFCDKEYKDPLNRRFHAQPIACPKCGPHL 183 (750)
T ss_pred CHHHHHHhcCccccccccccccCcccCCCe
Confidence 9999998865433 2599998653
No 361
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=77.95 E-value=1.2 Score=50.44 Aligned_cols=44 Identities=20% Similarity=0.404 Sum_probs=29.2
Q ss_pred ccccccccccccCCc-----eec--cCcccccHhhHHHHhccCCCCCcCCCCC
Q 004587 687 EILKCSICLERPKEV-----VIT--KCYHLFCNPCVQKVTESRHRKCPGCAAS 732 (743)
Q Consensus 687 ~~~~C~iC~~~~~~~-----~~~--~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~ 732 (743)
..+.|..|+..+.-| .++ .-|..+|..|-... .....||.|+..
T Consensus 434 ~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~--~~p~~Cp~Cgs~ 484 (730)
T COG1198 434 PLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQE--PIPQSCPECGSE 484 (730)
T ss_pred ceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCC--CCCCCCCCCCCC
Confidence 346888888777654 121 34666798898872 224569999876
No 362
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=77.82 E-value=2.6 Score=43.32 Aligned_cols=32 Identities=16% Similarity=0.430 Sum_probs=25.0
Q ss_pred cccccccccccCCce----eccCcccccHhhHHHHh
Q 004587 688 ILKCSICLERPKEVV----ITKCYHLFCNPCVQKVT 719 (743)
Q Consensus 688 ~~~C~iC~~~~~~~~----~~~Cgh~fC~~C~~~~~ 719 (743)
..-||+|...|.-.. .--||-+.|.+|..-+.
T Consensus 180 V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~iS 215 (505)
T KOG1842|consen 180 VQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKFIS 215 (505)
T ss_pred ccccccccchhhhHHHhhhhhhcchHHHHHHHHhcC
Confidence 469999999996542 22499999999998654
No 363
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=77.77 E-value=2 Score=41.77 Aligned_cols=56 Identities=21% Similarity=0.390 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhc-cccccccccccCC-------------c-eeccCcccccH---hhHHHHhccCCCCCcCCCC
Q 004587 675 IEELQQELREYRE-ILKCSICLERPKE-------------V-VITKCYHLFCN---PCVQKVTESRHRKCPGCAA 731 (743)
Q Consensus 675 ~~~l~~e~~~l~~-~~~C~iC~~~~~~-------------~-~~~~Cgh~fC~---~C~~~~~~~~~~~Cp~c~~ 731 (743)
...|...++.+.. ...|||=+....- | |-+.|||+-.. .|-... ..+.+.||+|+.
T Consensus 276 ~k~lE~~~~~iNA~RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~H~WG~~e~~-g~~~r~CPmC~~ 349 (429)
T KOG3842|consen 276 MKHLEALRQEINAARPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGYHNWGVRENT-GQRERECPMCRV 349 (429)
T ss_pred HHHHHHHHHHHhccCCCCCcccceeecccccccccccccCCeEEEecccccccccccccccc-CcccCcCCeeee
Confidence 3444444444432 5789987664311 3 66799998643 232221 224678999974
No 364
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=77.53 E-value=1.9 Score=37.85 Aligned_cols=47 Identities=19% Similarity=0.439 Sum_probs=32.9
Q ss_pred cccccccccccCCceeccCcccc-----cHhhHHHHhccC-CCCCcCCCCCCCC
Q 004587 688 ILKCSICLERPKEVVITKCYHLF-----CNPCVQKVTESR-HRKCPGCAASFSP 735 (743)
Q Consensus 688 ~~~C~iC~~~~~~~~~~~Cgh~f-----C~~C~~~~~~~~-~~~Cp~c~~~~~~ 735 (743)
...|=||+.... +...||.-.- =.+|+.+|.... ...||.|+.+|.-
T Consensus 8 ~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 8 DKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 368999998764 3345765211 368999998754 4579999988743
No 365
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=77.46 E-value=0.77 Score=41.26 Aligned_cols=27 Identities=19% Similarity=0.543 Sum_probs=18.0
Q ss_pred cccc-cHhhHHHHhccCCCCCcCCCCCCC
Q 004587 707 YHLF-CNPCVQKVTESRHRKCPGCAASFS 734 (743)
Q Consensus 707 gh~f-C~~C~~~~~~~~~~~Cp~c~~~~~ 734 (743)
.|.+ |..|...+. .+...||.||.++.
T Consensus 137 ~w~~rC~GC~~~f~-~~~~~Cp~CG~~~~ 164 (177)
T COG1439 137 KWRLRCHGCKRIFP-EPKDFCPICGSPLK 164 (177)
T ss_pred eeeEEEecCceecC-CCCCcCCCCCCceE
Confidence 3444 777777655 34567999988753
No 366
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=77.45 E-value=1.1 Score=42.87 Aligned_cols=45 Identities=22% Similarity=0.490 Sum_probs=31.0
Q ss_pred ccccccccccccCCceec----cCcccc--cHhhHHHHhccCCCCCcCCCCC
Q 004587 687 EILKCSICLERPKEVVIT----KCYHLF--CNPCVQKVTESRHRKCPGCAAS 732 (743)
Q Consensus 687 ~~~~C~iC~~~~~~~~~~----~Cgh~f--C~~C~~~~~~~~~~~Cp~c~~~ 732 (743)
....||+|+......++. .-|-.| |.-|-..|...| .+|-.|+..
T Consensus 184 ~~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~VR-~KC~nC~~t 234 (308)
T COG3058 184 SRQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYVR-VKCSNCEQS 234 (308)
T ss_pred ccccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHHH-HHhcccccc
Confidence 346999999887665432 234445 999999997643 458888643
No 367
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=77.33 E-value=1.5e+02 Score=34.42 Aligned_cols=47 Identities=13% Similarity=0.022 Sum_probs=30.0
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhhhh
Q 004587 166 RDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKS 212 (743)
Q Consensus 166 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~~e~~~l~~el~~l~~~l~~ 212 (743)
........++..+...+...+++...|+.++..+..+|+-...++.-
T Consensus 127 ~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~ 173 (769)
T PF05911_consen 127 EEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREY 173 (769)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666777777777777777777777777766655555443
No 368
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.21 E-value=1.5 Score=36.26 Aligned_cols=41 Identities=29% Similarity=0.557 Sum_probs=29.0
Q ss_pred ccccccccccCCce--------------eccCcccccHhhHHHHhccCCCCCcCCC
Q 004587 689 LKCSICLERPKEVV--------------ITKCYHLFCNPCVQKVTESRHRKCPGCA 730 (743)
Q Consensus 689 ~~C~iC~~~~~~~~--------------~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~ 730 (743)
..|..|...|..+. -..|++.||.+|=.=+.. .-+.||.|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe-~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHE-SLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhh-hccCCcCCC
Confidence 35999999886531 347999999999554333 345699995
No 369
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=77.00 E-value=0.77 Score=44.90 Aligned_cols=28 Identities=25% Similarity=0.610 Sum_probs=13.7
Q ss_pred cccccHhhHHHHhccCCCCCcCCCCCCC
Q 004587 707 YHLFCNPCVQKVTESRHRKCPGCAASFS 734 (743)
Q Consensus 707 gh~fC~~C~~~~~~~~~~~Cp~c~~~~~ 734 (743)
|-.||+.|...........||.|...|+
T Consensus 329 ~~~~Cf~C~~~~~~~~~y~C~~Ck~~FC 356 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGRYRCESCKNVFC 356 (378)
T ss_pred CCcceeeeccccCCCCcEEchhccceee
Confidence 4445666644444433344555555553
No 370
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=76.95 E-value=1.2e+02 Score=33.23 Aligned_cols=38 Identities=13% Similarity=0.255 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004587 453 AISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSK 490 (743)
Q Consensus 453 ~~~~~~l~~~e~~i~~l~~~l~~~~~~~~~l~~~l~~~ 490 (743)
...+++++.++..-..|.-++.-+..++..-..+|..+
T Consensus 107 ~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDL 144 (861)
T KOG1899|consen 107 PEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDL 144 (861)
T ss_pred hHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHH
Confidence 34556666666555555544444444444444444433
No 371
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=76.90 E-value=0.97 Score=45.83 Aligned_cols=45 Identities=22% Similarity=0.366 Sum_probs=0.0
Q ss_pred cccccccccccCC-------------c-eeccCcccccHhhHHHHhc--cCCCCCcCCCCC
Q 004587 688 ILKCSICLERPKE-------------V-VITKCYHLFCNPCVQKVTE--SRHRKCPGCAAS 732 (743)
Q Consensus 688 ~~~C~iC~~~~~~-------------~-~~~~Cgh~fC~~C~~~~~~--~~~~~Cp~c~~~ 732 (743)
...|||=+....- | |.+.|||++-+.=-..... ...+.||+|+..
T Consensus 277 rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 277 RPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYHNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp -------------------------------------------------------------
T ss_pred CCCCCcCCCccccccccccccccccCceeeccccceeeecccccccccccccccCCCcccc
Confidence 4788887554311 2 6779999986532211111 135789999854
No 372
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=76.84 E-value=89 Score=31.65 Aligned_cols=12 Identities=17% Similarity=0.155 Sum_probs=6.5
Q ss_pred ccccccccccCC
Q 004587 689 LKCSICLERPKE 700 (743)
Q Consensus 689 ~~C~iC~~~~~~ 700 (743)
..++||+-++.+
T Consensus 174 ~~~~I~~~~lp~ 185 (302)
T PF10186_consen 174 SEYTICGLPLPN 185 (302)
T ss_pred CCeeecCcccCC
Confidence 455577655433
No 373
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.84 E-value=1.2 Score=48.40 Aligned_cols=40 Identities=20% Similarity=0.527 Sum_probs=29.7
Q ss_pred ccccccccccCC----ceeccCcccccHhhHHHHhccCCCCCcCCCCC
Q 004587 689 LKCSICLERPKE----VVITKCYHLFCNPCVQKVTESRHRKCPGCAAS 732 (743)
Q Consensus 689 ~~C~iC~~~~~~----~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~ 732 (743)
-.|-+|..+-.. |..+.|+-+||.+|...+.. .||+|+-.
T Consensus 655 r~C~vcq~pedse~~v~rt~~C~~~~C~~c~~~~~~----~~~vC~~~ 698 (717)
T KOG3726|consen 655 RTCKVCQLPEDSETDVCRTTFCYTPYCVACSLDYAS----ISEVCGPD 698 (717)
T ss_pred HHHHHhcCCcCccccccCccccCCcchHhhhhhhhc----cCcccCch
Confidence 389999876542 34568999999999887643 49999844
No 374
>PLN02195 cellulose synthase A
Probab=76.41 E-value=2.1 Score=49.24 Aligned_cols=47 Identities=17% Similarity=0.511 Sum_probs=34.6
Q ss_pred cccccccccccCC-----c--eeccCcccccHhhHHHHhccCCCCCcCCCCCCC
Q 004587 688 ILKCSICLERPKE-----V--VITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 734 (743)
Q Consensus 688 ~~~C~iC~~~~~~-----~--~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~ 734 (743)
...|-||++...- | ..--||-..|..|..=--+.++..||.|+..+.
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 3589999985422 2 234688889999995444456778999999987
No 375
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=76.40 E-value=1.4 Score=36.91 Aligned_cols=7 Identities=57% Similarity=1.607 Sum_probs=3.7
Q ss_pred CCcCCCC
Q 004587 725 KCPGCAA 731 (743)
Q Consensus 725 ~Cp~c~~ 731 (743)
.||.|+.
T Consensus 62 ~CP~C~~ 68 (111)
T PF14319_consen 62 HCPSCQA 68 (111)
T ss_pred CCCCCCC
Confidence 4555553
No 376
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=76.33 E-value=1.8 Score=50.34 Aligned_cols=46 Identities=22% Similarity=0.647 Sum_probs=33.5
Q ss_pred ccccccccccCC-----c--eeccCcccccHhhHHHHhccCCCCCcCCCCCCC
Q 004587 689 LKCSICLERPKE-----V--VITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 734 (743)
Q Consensus 689 ~~C~iC~~~~~~-----~--~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~ 734 (743)
..|-||++..-- + ..--||--.|..|..=--+.++..||.|++.+.
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 389999986422 1 233677779999995444556778999998875
No 377
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=76.27 E-value=0.84 Score=43.14 Aligned_cols=23 Identities=30% Similarity=0.924 Sum_probs=18.5
Q ss_pred cCCceeccCcccccHhhHHHHhc
Q 004587 698 PKEVVITKCYHLFCNPCVQKVTE 720 (743)
Q Consensus 698 ~~~~~~~~Cgh~fC~~C~~~~~~ 720 (743)
-..-.++.|+|+||..|......
T Consensus 15 ~~~f~LTaC~HvfC~~C~k~~~~ 37 (233)
T KOG4739|consen 15 QDPFFLTACRHVFCEPCLKASSP 37 (233)
T ss_pred CCceeeeechhhhhhhhcccCCc
Confidence 55556889999999999987544
No 378
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=75.56 E-value=72 Score=31.25 Aligned_cols=54 Identities=11% Similarity=0.105 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 529 NIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCL 582 (743)
Q Consensus 529 ~~~l~~e~~~~~~~~~~l~~e~~~l~~el~~l~~~l~~~~~~~~~le~~~~~l~ 582 (743)
+.-+..++++.......|+.++......+..++.+++.++++.-.|.++++-+.
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677788888888888888888888888888888888888888888877665
No 379
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=75.50 E-value=1.3e+02 Score=32.96 Aligned_cols=10 Identities=40% Similarity=0.468 Sum_probs=5.3
Q ss_pred CcCCCCCCCC
Q 004587 726 CPGCAASFSP 735 (743)
Q Consensus 726 Cp~c~~~~~~ 735 (743)
||.-..||..
T Consensus 390 ~~~~~qpf~~ 399 (861)
T KOG1899|consen 390 NITSAQPFSP 399 (861)
T ss_pred ccccCCcCCC
Confidence 6555555543
No 380
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=75.45 E-value=0.9 Score=50.88 Aligned_cols=46 Identities=24% Similarity=0.523 Sum_probs=0.0
Q ss_pred cccccccccccCCceeccCc-cc----ccHhhHHHHhccCCCCCcCCCCCCCCC
Q 004587 688 ILKCSICLERPKEVVITKCY-HL----FCNPCVQKVTESRHRKCPGCAASFSPN 736 (743)
Q Consensus 688 ~~~C~iC~~~~~~~~~~~Cg-h~----fC~~C~~~~~~~~~~~Cp~c~~~~~~~ 736 (743)
...||-|+..--...+-.|| |+ +|..|-..... ..||.|+..+...
T Consensus 655 ~r~Cp~Cg~~t~~~~Cp~CG~~T~~~~~Cp~C~~~~~~---~~C~~C~~~~~~~ 705 (900)
T PF03833_consen 655 RRRCPKCGKETFYNRCPECGSHTEPVYVCPDCGIEVEE---DECPKCGRETTSY 705 (900)
T ss_dssp ------------------------------------------------------
T ss_pred cccCcccCCcchhhcCcccCCccccceeccccccccCc---cccccccccCccc
Confidence 46899998764444444587 32 69999987654 3799999886554
No 381
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=75.16 E-value=47 Score=27.61 Aligned_cols=44 Identities=20% Similarity=0.125 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 622 ESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVLRL 665 (743)
Q Consensus 622 ~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l 665 (743)
.++..+..+...+..+...+..+-.+...+.-+...++..+..+
T Consensus 12 ~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 12 QLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344444444444444444444444443
No 382
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=74.71 E-value=0.68 Score=28.78 Aligned_cols=25 Identities=32% Similarity=0.886 Sum_probs=12.8
Q ss_pred ccccHhhHHHHhccC---CCCCcCCCCC
Q 004587 708 HLFCNPCVQKVTESR---HRKCPGCAAS 732 (743)
Q Consensus 708 h~fC~~C~~~~~~~~---~~~Cp~c~~~ 732 (743)
|.||..|-....... .+.||.|+..
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~~ 30 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGHE 30 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-E
T ss_pred CcccCcCCccccCCCCcCEeECCCCcCE
Confidence 677777777664432 3568888754
No 383
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=74.49 E-value=1.3 Score=30.86 Aligned_cols=12 Identities=33% Similarity=0.811 Sum_probs=9.0
Q ss_pred cccccccccccc
Q 004587 687 EILKCSICLERP 698 (743)
Q Consensus 687 ~~~~C~iC~~~~ 698 (743)
.|+.||+|+..-
T Consensus 3 ~Wi~CP~CgnKT 14 (55)
T PF14205_consen 3 EWILCPICGNKT 14 (55)
T ss_pred eEEECCCCCCcc
Confidence 478899998543
No 384
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.29 E-value=1.8 Score=45.35 Aligned_cols=36 Identities=19% Similarity=0.396 Sum_probs=26.5
Q ss_pred hccccccccccccCC-----ceeccCcccccHhhHHHHhcc
Q 004587 686 REILKCSICLERPKE-----VVITKCYHLFCNPCVQKVTES 721 (743)
Q Consensus 686 ~~~~~C~iC~~~~~~-----~~~~~Cgh~fC~~C~~~~~~~ 721 (743)
..|..||.|...+-- .++=+|||-||+.|...|...
T Consensus 304 ~~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~ 344 (384)
T KOG1812|consen 304 KRWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTH 344 (384)
T ss_pred HhcCcCcccceeeeecCCcceEEeeccccchhhcCcchhhC
Confidence 567899999865421 233359999999999887663
No 385
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=74.25 E-value=1.9 Score=31.06 Aligned_cols=15 Identities=33% Similarity=1.052 Sum_probs=10.7
Q ss_pred CCCCCcCCCCCCCCC
Q 004587 722 RHRKCPGCAASFSPN 736 (743)
Q Consensus 722 ~~~~Cp~c~~~~~~~ 736 (743)
+++.||.||.++..+
T Consensus 2 ~HkHC~~CG~~Ip~~ 16 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPD 16 (59)
T ss_pred CCCcCCcCCCcCCcc
Confidence 356788888887653
No 386
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.13 E-value=1.4e+02 Score=32.49 Aligned_cols=8 Identities=38% Similarity=0.874 Sum_probs=4.3
Q ss_pred cHhhHHHH
Q 004587 711 CNPCVQKV 718 (743)
Q Consensus 711 C~~C~~~~ 718 (743)
|..|....
T Consensus 624 c~~c~~~T 631 (852)
T KOG4787|consen 624 CSKCDQLT 631 (852)
T ss_pred ccchhhhh
Confidence 55565544
No 387
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=74.08 E-value=46 Score=27.04 Aligned_cols=60 Identities=10% Similarity=0.112 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 458 RLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQ 517 (743)
Q Consensus 458 ~l~~~e~~i~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~el~~~~~~ 517 (743)
+|+.++.....+...+.....++..++..+..+..++.....++-.+.+..+.+..++..
T Consensus 4 EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~ 63 (96)
T PF08647_consen 4 ELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKK 63 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344444444444444444444444444444444444443333333333333333333333
No 388
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=74.05 E-value=1.6 Score=42.74 Aligned_cols=40 Identities=25% Similarity=0.592 Sum_probs=25.6
Q ss_pred cccccccccCC-c--eeccCcccccHhhHHHHhccCCCCCcCCC
Q 004587 690 KCSICLERPKE-V--VITKCYHLFCNPCVQKVTESRHRKCPGCA 730 (743)
Q Consensus 690 ~C~iC~~~~~~-~--~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~ 730 (743)
.|..|+..... + ..-.|-|+||.+|=.= +...-..||.|.
T Consensus 332 ~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~-iHesLh~CpgCe 374 (378)
T KOG2807|consen 332 FCFACQGELLSSGRYRCESCKNVFCLDCDVF-IHESLHNCPGCE 374 (378)
T ss_pred ceeeeccccCCCCcEEchhccceeeccchHH-HHhhhhcCCCcC
Confidence 48888443333 2 2337899999999553 333345699996
No 389
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=73.98 E-value=2 Score=29.99 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=19.0
Q ss_pred cccccccccCCceeccCcccccHhh
Q 004587 690 KCSICLERPKEVVITKCYHLFCNPC 714 (743)
Q Consensus 690 ~C~iC~~~~~~~~~~~Cgh~fC~~C 714 (743)
.|..|+......+.+.|||++|...
T Consensus 1 ~C~~C~~~~~l~~CL~C~~~~c~~~ 25 (50)
T smart00290 1 RCSVCGTIENLWLCLTCGQVGCGRY 25 (50)
T ss_pred CcccCCCcCCeEEecCCCCcccCCC
Confidence 4889986665557788999999543
No 390
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=73.63 E-value=1.2 Score=29.79 Aligned_cols=25 Identities=28% Similarity=0.503 Sum_probs=15.6
Q ss_pred cCcccccHhhHHHHhccCCCCCcCCCC
Q 004587 705 KCYHLFCNPCVQKVTESRHRKCPGCAA 731 (743)
Q Consensus 705 ~Cgh~fC~~C~~~~~~~~~~~Cp~c~~ 731 (743)
.|||.|-.-..-. ......||.|+.
T Consensus 10 ~Cg~~fe~~~~~~--~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQSIS--EDDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEEcC--CCCCCcCCCCCC
Confidence 6888875443222 123567999987
No 391
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=73.47 E-value=2.3 Score=49.33 Aligned_cols=46 Identities=20% Similarity=0.582 Sum_probs=34.0
Q ss_pred ccccccccccCC-----c--eeccCcccccHhhHHHHhccCCCCCcCCCCCCC
Q 004587 689 LKCSICLERPKE-----V--VITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 734 (743)
Q Consensus 689 ~~C~iC~~~~~~-----~--~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~ 734 (743)
..|.||++.... | ..--||-..|..|..=-.+..+..||.|+..+.
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 589999986432 2 233677779999996545556778999998876
No 392
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=73.24 E-value=1.4e+02 Score=32.26 Aligned_cols=64 Identities=13% Similarity=0.009 Sum_probs=31.6
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHhHHHHHhhHHHHHHHHHHHHHhhHhHHHh
Q 004587 69 SNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAAL 134 (743)
Q Consensus 69 ~~l~~~~~~~~~~l~~l~~~~~~~~~el~~~~~~~~~~~~e~~~l~~el~~~~~~le~~~~~~~~~ 134 (743)
.|.+++.+-.-..+..++..+-+.+.-.... ...+.+..+......+..+...++...+.++.+
T Consensus 67 ~Wrq~W~di~~~~fadvEE~lfeAE~~~dkf--rF~kA~~~i~~ie~~l~~iE~~i~~il~~l~~L 130 (570)
T COG4477 67 EWRQKWDDIVTNSFADVEEHLFEAEALADKF--RFNKAKHEIDDIEQQLTLIEEDIEQILEDLNEL 130 (570)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHhhhhh--hhHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433322222 233355555666666666666666666655555
No 393
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=73.01 E-value=2.2 Score=48.18 Aligned_cols=53 Identities=21% Similarity=0.379 Sum_probs=34.4
Q ss_pred hccccccccccccCCce-eccCcccccHhhHHHHhcc---CCCCCcCCCCCCCCCCC
Q 004587 686 REILKCSICLERPKEVV-ITKCYHLFCNPCVQKVTES---RHRKCPGCAASFSPNDV 738 (743)
Q Consensus 686 ~~~~~C~iC~~~~~~~~-~~~Cgh~fC~~C~~~~~~~---~~~~Cp~c~~~~~~~~~ 738 (743)
+-.+.|++|+.+..-|+ -..|.|.=|++-..-.-.+ ....||+|.+.+...++
T Consensus 304 ~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l 360 (636)
T KOG2169|consen 304 RVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGL 360 (636)
T ss_pred eeEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCccccccch
Confidence 33579999998887764 3467776555544333222 23469999998877664
No 394
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=72.95 E-value=0.95 Score=30.95 Aligned_cols=13 Identities=23% Similarity=0.547 Sum_probs=9.6
Q ss_pred CCCcCCCCCCCCC
Q 004587 724 RKCPGCAASFSPN 736 (743)
Q Consensus 724 ~~Cp~c~~~~~~~ 736 (743)
..||.||.++...
T Consensus 22 ~~Cp~CG~~~~~~ 34 (46)
T PRK00398 22 VRCPYCGYRILFK 34 (46)
T ss_pred eECCCCCCeEEEc
Confidence 4599999887543
No 395
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=72.84 E-value=1.5 Score=28.29 Aligned_cols=13 Identities=23% Similarity=0.557 Sum_probs=10.2
Q ss_pred ccccccccccCCc
Q 004587 689 LKCSICLERPKEV 701 (743)
Q Consensus 689 ~~C~iC~~~~~~~ 701 (743)
..||-|...|.-|
T Consensus 3 i~CP~C~~~f~v~ 15 (37)
T PF13719_consen 3 ITCPNCQTRFRVP 15 (37)
T ss_pred EECCCCCceEEcC
Confidence 5789888888665
No 396
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=72.30 E-value=63 Score=29.54 Aligned_cols=30 Identities=37% Similarity=0.609 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 459 LAAAEAEIADMRQKLEAFKRDMVSLSDALK 488 (743)
Q Consensus 459 l~~~e~~i~~l~~~l~~~~~~~~~l~~~l~ 488 (743)
+..+..+|..++.++..+...+..+...+.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333333333
No 397
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=72.07 E-value=1.5e+02 Score=32.10 Aligned_cols=195 Identities=14% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 004587 461 AAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETI--GQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVR 538 (743)
Q Consensus 461 ~~e~~i~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l--~~~~~el~~~~~~l~~~~~~~~~~~~~l~~e~~~ 538 (743)
..............-+..++..+..++...+..+..+..+-.-+ .....-...++..+..++...+............
T Consensus 161 ~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~ 240 (444)
T TIGR03017 161 NIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGG 240 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred -----------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHhHHHHHHHH
Q 004587 539 -----------ARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDR-SQNSANLENTQKRL 606 (743)
Q Consensus 539 -----------~~~~~~~l~~e~~~l~~el~~l~~~l~~~~~~~~~le~~~~~l~~~l~~l~~el-~~~~~~l~~~~~~~ 606 (743)
....+..+..++..++.++..+...+..-.-.+..+..++..+...+......+ ......+.......
T Consensus 241 ~~~~~~~~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~ 320 (444)
T TIGR03017 241 SSGKDALPEVIANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQRE 320 (444)
T ss_pred cCCcccchhhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 607 SDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGR 659 (743)
Q Consensus 607 ~e~~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~ 659 (743)
..+...+..++..+..+... ..++..+.++++-.+.....+-......+
T Consensus 321 ~~l~~~l~~~~~~~~~l~~~----~~~~~~L~r~~~~~~~~y~~ll~r~~e~~ 369 (444)
T TIGR03017 321 AELREALENQKAKVLELNRQ----RDEMSVLQRDVENAQRAYDAAMQRYTQTR 369 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 398
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=71.95 E-value=1e+02 Score=30.11 Aligned_cols=12 Identities=25% Similarity=0.407 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 004587 464 AEIADMRQKLEA 475 (743)
Q Consensus 464 ~~i~~l~~~l~~ 475 (743)
.-|..|+..|.+
T Consensus 68 V~iRHLkakLke 79 (305)
T PF15290_consen 68 VCIRHLKAKLKE 79 (305)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 399
>PLN02400 cellulose synthase
Probab=71.12 E-value=2.5 Score=49.32 Aligned_cols=46 Identities=24% Similarity=0.643 Sum_probs=33.2
Q ss_pred ccccccccccCC-----c--eeccCcccccHhhHHHHhccCCCCCcCCCCCCC
Q 004587 689 LKCSICLERPKE-----V--VITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 734 (743)
Q Consensus 689 ~~C~iC~~~~~~-----~--~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~ 734 (743)
..|-||++..-- + ..--||--.|..|..=--+..+..||.|++.+.
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 389999986432 1 233677778999995444455678999998875
No 400
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=70.55 E-value=2.5 Score=27.74 Aligned_cols=12 Identities=33% Similarity=1.013 Sum_probs=9.8
Q ss_pred CCCCcCCCCCCC
Q 004587 723 HRKCPGCAASFS 734 (743)
Q Consensus 723 ~~~Cp~c~~~~~ 734 (743)
...||+|+.||.
T Consensus 8 ~K~C~~C~rpf~ 19 (42)
T PF10013_consen 8 SKICPVCGRPFT 19 (42)
T ss_pred CCcCcccCCcch
Confidence 456999999985
No 401
>PF13166 AAA_13: AAA domain
Probab=69.79 E-value=2.2e+02 Score=33.12 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004587 620 LEESQSKVYKSRLTLMELQIE 640 (743)
Q Consensus 620 l~~l~~~~~~~~~~l~~~~~~ 640 (743)
+..+...+..+...+.++...
T Consensus 433 ~~~~~~~~~~~~~~i~~l~~~ 453 (712)
T PF13166_consen 433 LKKAKEEIKKIEKEIKELEAQ 453 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 402
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=69.79 E-value=4 Score=28.69 Aligned_cols=41 Identities=24% Similarity=0.679 Sum_probs=27.9
Q ss_pred ccccccccccC--Ccee--ccCcccccHhhHHHHhccCCCCCcC--CCCCCC
Q 004587 689 LKCSICLERPK--EVVI--TKCYHLFCNPCVQKVTESRHRKCPG--CAASFS 734 (743)
Q Consensus 689 ~~C~iC~~~~~--~~~~--~~Cgh~fC~~C~~~~~~~~~~~Cp~--c~~~~~ 734 (743)
..|++|+..|+ +.++ -.||-.+=..|.... ..|-. |+.+|.
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~-----g~C~~~~c~~~~~ 52 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKA-----GGCINYSCGTGFE 52 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhhC-----CceEeccCCCCcc
Confidence 58999999994 4433 368877777776653 34766 777764
No 403
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=69.67 E-value=2 Score=27.53 Aligned_cols=13 Identities=15% Similarity=0.439 Sum_probs=9.6
Q ss_pred ccccccccccCCc
Q 004587 689 LKCSICLERPKEV 701 (743)
Q Consensus 689 ~~C~iC~~~~~~~ 701 (743)
+.||-|...|.-+
T Consensus 3 i~Cp~C~~~y~i~ 15 (36)
T PF13717_consen 3 ITCPNCQAKYEID 15 (36)
T ss_pred EECCCCCCEEeCC
Confidence 5788888887554
No 404
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=69.59 E-value=1.8 Score=36.74 Aligned_cols=26 Identities=19% Similarity=0.487 Sum_probs=15.8
Q ss_pred cccccHhhHHHHhccC--CCCCcCCCCC
Q 004587 707 YHLFCNPCVQKVTESR--HRKCPGCAAS 732 (743)
Q Consensus 707 gh~fC~~C~~~~~~~~--~~~Cp~c~~~ 732 (743)
+..+|..|-..+.... ...||.|+.+
T Consensus 70 ~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~ 97 (117)
T PRK00564 70 VELECKDCSHVFKPNALDYGVCEKCHSK 97 (117)
T ss_pred CEEEhhhCCCccccCCccCCcCcCCCCC
Confidence 4555667775553322 2349999976
No 405
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=69.53 E-value=2.4e+02 Score=33.28 Aligned_cols=88 Identities=11% Similarity=0.088 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhhhh--hhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 169 RDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKS--VKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKL 246 (743)
Q Consensus 169 ~~~~~~l~~l~~~~~~~~~e~~~l~~e~~~l~~el~~l~~~l~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l 246 (743)
..+..++..+.+.+......+..|+.+...+..++......+.. .+....-..+....+.+......+..++..-...
T Consensus 258 ~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~r 337 (1072)
T KOG0979|consen 258 DRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKR 337 (1072)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444454444445555555555555556666555555554 2111111222233334444444444444444444
Q ss_pred HHHHHHHHHH
Q 004587 247 QVEKDNLAWR 256 (743)
Q Consensus 247 ~~e~~~l~~~ 256 (743)
+..+......
T Consensus 338 q~~i~~~~k~ 347 (1072)
T KOG0979|consen 338 QKRIEKAKKM 347 (1072)
T ss_pred HHHHHHHHHH
Confidence 4444443333
No 406
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=69.36 E-value=1.6 Score=34.25 Aligned_cols=12 Identities=42% Similarity=1.179 Sum_probs=9.9
Q ss_pred CCCcCCCCCCCC
Q 004587 724 RKCPGCAASFSP 735 (743)
Q Consensus 724 ~~Cp~c~~~~~~ 735 (743)
..||.|+.+|..
T Consensus 81 ~~Cp~C~spFNp 92 (105)
T COG4357 81 GSCPYCQSPFNP 92 (105)
T ss_pred CCCCCcCCCCCc
Confidence 459999999965
No 407
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=69.07 E-value=2.8 Score=47.01 Aligned_cols=25 Identities=28% Similarity=0.668 Sum_probs=15.2
Q ss_pred ccHhhHHHHhccCCCCCcCCCCCCCC
Q 004587 710 FCNPCVQKVTESRHRKCPGCAASFSP 735 (743)
Q Consensus 710 fC~~C~~~~~~~~~~~Cp~c~~~~~~ 735 (743)
+|..|-..... ...+||.||.++..
T Consensus 29 ~Cp~CG~~~~~-~~~fC~~CG~~~~~ 53 (645)
T PRK14559 29 PCPQCGTEVPV-DEAHCPNCGAETGT 53 (645)
T ss_pred cCCCCCCCCCc-ccccccccCCcccc
Confidence 46666665433 35678888876543
No 408
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=68.71 E-value=2.3 Score=41.05 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=10.0
Q ss_pred cccccccccccCCc
Q 004587 688 ILKCSICLERPKEV 701 (743)
Q Consensus 688 ~~~C~iC~~~~~~~ 701 (743)
-..|.||+..|..|
T Consensus 187 ~c~C~iCGKaFSRP 200 (279)
T KOG2462|consen 187 PCECGICGKAFSRP 200 (279)
T ss_pred Ccccccccccccch
Confidence 35777777777765
No 409
>PRK00420 hypothetical protein; Validated
Probab=68.63 E-value=1.6 Score=36.27 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=17.5
Q ss_pred cHhhHHHHhc--cCCCCCcCCCCCCCC
Q 004587 711 CNPCVQKVTE--SRHRKCPGCAASFSP 735 (743)
Q Consensus 711 C~~C~~~~~~--~~~~~Cp~c~~~~~~ 735 (743)
|..|...++. .+...||.|+..+..
T Consensus 26 CP~Cg~pLf~lk~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 26 CPVCGLPLFELKDGEVVCPVHGKVYIV 52 (112)
T ss_pred CCCCCCcceecCCCceECCCCCCeeee
Confidence 6666666664 456679999987644
No 410
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=68.62 E-value=2.3 Score=35.71 Aligned_cols=13 Identities=8% Similarity=-0.061 Sum_probs=8.7
Q ss_pred cccccccccccCC
Q 004587 688 ILKCSICLERPKE 700 (743)
Q Consensus 688 ~~~C~iC~~~~~~ 700 (743)
...||-|+.+|.+
T Consensus 9 Kr~Cp~cg~kFYD 21 (129)
T TIGR02300 9 KRICPNTGSKFYD 21 (129)
T ss_pred cccCCCcCccccc
Confidence 3577777777754
No 411
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=68.41 E-value=1.7e+02 Score=31.11 Aligned_cols=18 Identities=17% Similarity=0.075 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 004587 420 DLEYKAWAHVHSLKSSLD 437 (743)
Q Consensus 420 ~~~~~~~~~~~~l~~~l~ 437 (743)
.....+...+..|+..+.
T Consensus 209 a~~a~LE~RL~~LE~~lG 226 (388)
T PF04912_consen 209 ARAADLEKRLARLESALG 226 (388)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 444455555555555443
No 412
>PF08772 NOB1_Zn_bind: Nin one binding (NOB1) Zn-ribbon like; InterPro: IPR014881 This entry corresponds to a zinc ribbon and is found on the RNA binding protein NOB1. ; PDB: 2CON_A.
Probab=68.40 E-value=1.4 Score=33.31 Aligned_cols=22 Identities=23% Similarity=0.830 Sum_probs=5.6
Q ss_pred cHhhHHHHhccCCCCCcCCCCC
Q 004587 711 CNPCVQKVTESRHRKCPGCAAS 732 (743)
Q Consensus 711 C~~C~~~~~~~~~~~Cp~c~~~ 732 (743)
|..|..-.......+||.||..
T Consensus 12 C~aCf~~t~~~~k~FCp~CGn~ 33 (73)
T PF08772_consen 12 CHACFKITKDMTKQFCPKCGNA 33 (73)
T ss_dssp -SSS--EES-SS--S-SSS--S
T ss_pred ccccccCcCCCCceeCcccCCC
Confidence 3344443333333445555543
No 413
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=68.29 E-value=3.4 Score=29.07 Aligned_cols=16 Identities=31% Similarity=0.904 Sum_probs=12.2
Q ss_pred CCCCCcCCCCCCCCCC
Q 004587 722 RHRKCPGCAASFSPND 737 (743)
Q Consensus 722 ~~~~Cp~c~~~~~~~~ 737 (743)
+++.||+|++++....
T Consensus 7 PH~HC~VCg~aIp~de 22 (64)
T COG4068 7 PHRHCVVCGKAIPPDE 22 (64)
T ss_pred CCccccccCCcCCCcc
Confidence 4678999999886543
No 414
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=68.25 E-value=1.2e+02 Score=29.60 Aligned_cols=23 Identities=17% Similarity=0.357 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHH
Q 004587 602 TQKRLSDVRKSSVQVRGSLEESQ 624 (743)
Q Consensus 602 ~~~~~~e~~~~~~~l~~~l~~l~ 624 (743)
++..+.++..++..|+..+..+.
T Consensus 198 ~re~i~el~e~I~~L~~eV~~L~ 220 (258)
T PF15397_consen 198 FREEIDELEEEIPQLRAEVEQLQ 220 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 415
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=67.73 E-value=1.9e+02 Score=31.51 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 629 KSRLTLMELQIELVKERFAKKRLEEDLEMG 658 (743)
Q Consensus 629 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l 658 (743)
.....+.....++...+..+..+...+...
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~ 317 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDSQKG 317 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344455555555555555555555555443
No 416
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.59 E-value=1.5 Score=29.24 Aligned_cols=12 Identities=42% Similarity=1.029 Sum_probs=9.6
Q ss_pred CCCCcCCCCCCC
Q 004587 723 HRKCPGCAASFS 734 (743)
Q Consensus 723 ~~~Cp~c~~~~~ 734 (743)
...||+|+.||.
T Consensus 12 ~KICpvCqRPFs 23 (54)
T COG4338 12 DKICPVCQRPFS 23 (54)
T ss_pred hhhhhhhcCchH
Confidence 356999999985
No 417
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=67.56 E-value=2 Score=36.55 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=14.5
Q ss_pred ccccccccccCCceeccCcccccHhhH
Q 004587 689 LKCSICLERPKEVVITKCYHLFCNPCV 715 (743)
Q Consensus 689 ~~C~iC~~~~~~~~~~~Cgh~fC~~C~ 715 (743)
-.||.|+.+. |-+=|-+||..|-
T Consensus 29 ~hCp~Cg~PL----F~KdG~v~CPvC~ 51 (131)
T COG1645 29 KHCPKCGTPL----FRKDGEVFCPVCG 51 (131)
T ss_pred hhCcccCCcc----eeeCCeEECCCCC
Confidence 4899998653 2255666665555
No 418
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=67.22 E-value=2.1 Score=38.39 Aligned_cols=10 Identities=40% Similarity=0.899 Sum_probs=7.9
Q ss_pred CCCCcCCCCC
Q 004587 723 HRKCPGCAAS 732 (743)
Q Consensus 723 ~~~Cp~c~~~ 732 (743)
.-.||+|+.|
T Consensus 149 P~~CPiCga~ 158 (166)
T COG1592 149 PEVCPICGAP 158 (166)
T ss_pred CCcCCCCCCh
Confidence 4569999976
No 419
>PF10164 DUF2367: Uncharacterized conserved protein (DUF2367); InterPro: IPR019317 This is a highly conserved set of proteins which contains three pairs of cysteine residues within a length of 42 amino acids and is rich in proline residues towards the N terminus. It includes a membrane protein that has been found to be highly expressed in the mouse brain and consequently, several members have been assigned as brain protein i3 (Bri3). Their function is unknown.
Probab=66.78 E-value=1.6 Score=34.62 Aligned_cols=37 Identities=30% Similarity=0.558 Sum_probs=23.0
Q ss_pred cccccccccCCce-----------eccCcccccHhhHHHHhccCCCCCcCCCCCC
Q 004587 690 KCSICLERPKEVV-----------ITKCYHLFCNPCVQKVTESRHRKCPGCAASF 733 (743)
Q Consensus 690 ~C~iC~~~~~~~~-----------~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~ 733 (743)
.|+.|....-... ++|+|-.+|..+ +.++|+.|+..|
T Consensus 51 gCp~CrvG~le~~ft~~Gi~~AI~fFPiGilcc~~~-------r~~rC~nCG~~f 98 (98)
T PF10164_consen 51 GCPACRVGVLEDSFTCCGILCAIFFFPIGILCCLAM-------RERRCSNCGATF 98 (98)
T ss_pred CCCCCceeeecccccHHHHHHHHHHHhhHHHHhhhc-------CccccCCCCccC
Confidence 6999976543322 235555544433 457799999876
No 420
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=66.76 E-value=70 Score=26.14 Aligned_cols=70 Identities=19% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 004587 417 AARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIE 495 (743)
Q Consensus 417 ~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~e~~i~~l~~~l~~~~~~~~~l~~~l~~~~~e~~ 495 (743)
.+-.+..+++++..-|++.+-.-.. ....+...|...+..|..+..+++.+.-....|..++..++.+++
T Consensus 2 kla~eYsKLraQ~~vLKKaVieEQ~---------k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 2 KLAQEYSKLRAQNQVLKKAVIEEQA---------KNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 421
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=66.40 E-value=1.5e+02 Score=29.80 Aligned_cols=57 Identities=16% Similarity=0.154 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004587 508 YDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASL 564 (743)
Q Consensus 508 ~~el~~~~~~l~~~~~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~el~~l~~~l 564 (743)
.++++.++..|..++-...+-+.+.......++..+..+.++...++.++..+..+.
T Consensus 101 ~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~ 157 (401)
T PF06785_consen 101 SEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQEC 157 (401)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344445555555555544444444444455444444555555555555544444333
No 422
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=65.93 E-value=5.7 Score=25.23 Aligned_cols=25 Identities=20% Similarity=0.812 Sum_probs=14.3
Q ss_pred ccHhhHHHHhccCC-------CCCcCCCCCCC
Q 004587 710 FCNPCVQKVTESRH-------RKCPGCAASFS 734 (743)
Q Consensus 710 fC~~C~~~~~~~~~-------~~Cp~c~~~~~ 734 (743)
+|..|...+....+ ..||.||-.+.
T Consensus 1 lC~~C~~Ey~~p~~RR~~~~~isC~~CGPr~~ 32 (35)
T PF07503_consen 1 LCDDCLKEYFDPSNRRFHYQFISCTNCGPRYS 32 (35)
T ss_dssp --HHHHHHHCSTTSTTTT-TT--BTTCC-SCC
T ss_pred CCHHHHHHHcCCCCCcccCcCccCCCCCCCEE
Confidence 47888888755332 25999987664
No 423
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=65.48 E-value=1.1e+02 Score=27.95 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 453 AISQQRLAAAEAEIADMRQKLEAFKR 478 (743)
Q Consensus 453 ~~~~~~l~~~e~~i~~l~~~l~~~~~ 478 (743)
..++.+|+.++-+-......+..+..
T Consensus 7 K~LQeKIrrLELER~qAe~nl~~LS~ 32 (178)
T PF14073_consen 7 KNLQEKIRRLELERSQAEDNLKQLSR 32 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34445555554444444444444433
No 424
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=65.45 E-value=2 Score=41.83 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=35.1
Q ss_pred hccccccccccccCCceeccCccc-ccHhhHHHHhccCCCCCcCCCCCCC
Q 004587 686 REILKCSICLERPKEVVITKCYHL-FCNPCVQKVTESRHRKCPGCAASFS 734 (743)
Q Consensus 686 ~~~~~C~iC~~~~~~~~~~~Cgh~-fC~~C~~~~~~~~~~~Cp~c~~~~~ 734 (743)
+....|.+|+..-.-....+|||. ||-.|....--.+.+.||+|...+.
T Consensus 134 ~~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ 183 (394)
T KOG2113|consen 134 GATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVT 183 (394)
T ss_pred cCccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhh
Confidence 345688888866554455689986 6999976663346788999987764
No 425
>PRK12496 hypothetical protein; Provisional
Probab=65.38 E-value=2.3 Score=38.55 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=18.0
Q ss_pred cHhhHHHHhcc-CCCCCcCCCCCCCCCC
Q 004587 711 CNPCVQKVTES-RHRKCPGCAASFSPND 737 (743)
Q Consensus 711 C~~C~~~~~~~-~~~~Cp~c~~~~~~~~ 737 (743)
|..|...+-.. ....||+||.++....
T Consensus 130 C~gC~~~~~~~~~~~~C~~CG~~~~r~~ 157 (164)
T PRK12496 130 CKGCKKKYPEDYPDDVCEICGSPVKRKM 157 (164)
T ss_pred CCCCCccccCCCCCCcCCCCCChhhhcc
Confidence 78887766432 2246999999875543
No 426
>KOG3475 consensus 60S ribosomal protein L37 [Translation, ribosomal structure and biogenesis]
Probab=64.76 E-value=2.6 Score=31.98 Aligned_cols=28 Identities=18% Similarity=0.561 Sum_probs=23.5
Q ss_pred cccccHhhHHHHhccCCCCCcCCCCCCC
Q 004587 707 YHLFCNPCVQKVTESRHRKCPGCAASFS 734 (743)
Q Consensus 707 gh~fC~~C~~~~~~~~~~~Cp~c~~~~~ 734 (743)
.|+.|..|-...+..-...|..|+.|-.
T Consensus 15 shtlC~RCG~~syH~QKstC~~CGYpaa 42 (92)
T KOG3475|consen 15 SHTLCRRCGRRSYHIQKSTCSSCGYPAA 42 (92)
T ss_pred chHHHHHhCchhhhhhcccccccCCcch
Confidence 5999999999888766678999998854
No 427
>PRK10869 recombination and repair protein; Provisional
Probab=64.68 E-value=2.4e+02 Score=31.60 Aligned_cols=32 Identities=9% Similarity=0.050 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 451 AEAISQQRLAAAEAEIADMRQKLEAFKRDMVS 482 (743)
Q Consensus 451 ~~~~~~~~l~~~e~~i~~l~~~l~~~~~~~~~ 482 (743)
.+..+..++..+.........+++-++-++.+
T Consensus 165 ~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~E 196 (553)
T PRK10869 165 LWHQSCRDLAQHQQQSQERAARKQLLQYQLKE 196 (553)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444433333
No 428
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=64.28 E-value=3.9 Score=30.18 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=22.5
Q ss_pred hcccccc--ccccccCC-------ceec-cCcccccHhhHHHHh
Q 004587 686 REILKCS--ICLERPKE-------VVIT-KCYHLFCNPCVQKVT 719 (743)
Q Consensus 686 ~~~~~C~--iC~~~~~~-------~~~~-~Cgh~fC~~C~~~~~ 719 (743)
.....|| -|...+.. .+.= .|||.||..|...|.
T Consensus 16 ~~~~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~H 59 (64)
T smart00647 16 PDLKWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPWH 59 (64)
T ss_pred CCccCCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcCC
Confidence 3456799 88553321 2333 689999999988764
No 429
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.17 E-value=14 Score=41.24 Aligned_cols=40 Identities=25% Similarity=0.574 Sum_probs=29.4
Q ss_pred cccccccccC-------CceeccCcccccHhhHHHHhccCCCCCcCCCC
Q 004587 690 KCSICLERPK-------EVVITKCYHLFCNPCVQKVTESRHRKCPGCAA 731 (743)
Q Consensus 690 ~C~iC~~~~~-------~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~ 731 (743)
.|+.|+.+.- ..+++.|||.|-..|+....-.+ .|..|..
T Consensus 786 rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~--~~~~~~~ 832 (846)
T KOG2066|consen 786 RCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRN--ACNIESG 832 (846)
T ss_pred hhhhhcccccccCcccceeeEEEccchhhhcccccHHHhc--ccChhhc
Confidence 8999988653 34688999999999998765432 2666643
No 430
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=64.11 E-value=3 Score=45.89 Aligned_cols=42 Identities=24% Similarity=0.387 Sum_probs=22.5
Q ss_pred ccccccccccCCc-----ee--ccCcccccHhhHHHHhccCCCCCcCCCCC
Q 004587 689 LKCSICLERPKEV-----VI--TKCYHLFCNPCVQKVTESRHRKCPGCAAS 732 (743)
Q Consensus 689 ~~C~iC~~~~~~~-----~~--~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~ 732 (743)
+.|.-|+....-| .+ ..=+...|..|-....- ...||.|+..
T Consensus 214 ~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~--~~~Cp~C~s~ 262 (505)
T TIGR00595 214 LLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPI--PKTCPQCGSE 262 (505)
T ss_pred eEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCC--CCCCCCCCCC
Confidence 4666666655443 01 01223447777755322 3569999864
No 431
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=63.92 E-value=9.9 Score=34.63 Aligned_cols=15 Identities=27% Similarity=0.698 Sum_probs=11.3
Q ss_pred CCCcCCCCCCCCCCC
Q 004587 724 RKCPGCAASFSPNDV 738 (743)
Q Consensus 724 ~~Cp~c~~~~~~~~~ 738 (743)
..||.||..+...|-
T Consensus 133 F~Cp~Cg~~L~~~d~ 147 (176)
T COG1675 133 FTCPKCGEDLEEYDS 147 (176)
T ss_pred CCCCCCCchhhhccc
Confidence 569999988766553
No 432
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=63.54 E-value=1.3 Score=40.12 Aligned_cols=15 Identities=13% Similarity=0.428 Sum_probs=11.7
Q ss_pred ccccccccccccCCc
Q 004587 687 EILKCSICLERPKEV 701 (743)
Q Consensus 687 ~~~~C~iC~~~~~~~ 701 (743)
+.++|-||+..|.-.
T Consensus 116 d~ftCrvCgK~F~lQ 130 (267)
T KOG3576|consen 116 DSFTCRVCGKKFGLQ 130 (267)
T ss_pred CeeeeehhhhhhhHH
Confidence 358999999988653
No 433
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=63.20 E-value=3.2 Score=26.92 Aligned_cols=13 Identities=23% Similarity=0.588 Sum_probs=8.3
Q ss_pred ccccccccccCCc
Q 004587 689 LKCSICLERPKEV 701 (743)
Q Consensus 689 ~~C~iC~~~~~~~ 701 (743)
+.||-|+..|.-+
T Consensus 3 ~~CP~C~~~~~v~ 15 (38)
T TIGR02098 3 IQCPNCKTSFRVV 15 (38)
T ss_pred EECCCCCCEEEeC
Confidence 5677777766543
No 434
>PLN02939 transferase, transferring glycosyl groups
Probab=63.16 E-value=3.2e+02 Score=32.58 Aligned_cols=257 Identities=13% Similarity=0.072 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhhhhHHhHHHHHhhHHHHHHHHHHHHHhhHhHHHhhhhhhhhccccccccccCCcccccccchhhhhh
Q 004587 88 KHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRD 167 (743)
Q Consensus 88 ~~~~~~~el~~~~~~~~~~~~e~~~l~~el~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (743)
++..+..=+.+....+--+..-.-..-..+..+..+.+...+++.-+.+.......... -...-...
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~ 195 (977)
T PLN02939 129 QLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIK-------------LAAQEKIH 195 (977)
T ss_pred cHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhh-------------hhhhcccc
Q ss_pred HhhHHHHHHHHHHHHHH-----------HHHHHHhHhhhHHHHHHHHHHHHHhhhhhhhhhchhhHHHHHHHHHHHHHHH
Q 004587 168 LRDMESVHKELMDQASH-----------QLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEV 236 (743)
Q Consensus 168 ~~~~~~~l~~l~~~~~~-----------~~~e~~~l~~e~~~l~~el~~l~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~ 236 (743)
..-+...++.+...+.. .-.++..++.++-.++..++.++..+. .........-.+..+..-+..-+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 273 (977)
T PLN02939 196 VEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELI--EVAETEERVFKLEKERSLLDASL 273 (977)
T ss_pred chhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhhhhhchHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHH
Q 004587 237 FKYQALFEKLQVEKDNLAW-RETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEII 315 (743)
Q Consensus 237 ~~~~~~~~~l~~e~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~ 315 (743)
.+++.++...+.....+.. ..+-+-.+++.+.......+.-..+..-.-.+-+++..+++.|+.-+.++.-..-....+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (977)
T PLN02939 274 RELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKV 353 (977)
T ss_pred HHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHH
Q ss_pred HHHHHHhhccHHHHHHHHHHH-HHhHHHHHHHHHHHHhHHhHHHH
Q 004587 316 AEFRALVSSFPEDMSAMQRQL-SKYKEAALDIHILRADVLSLTNV 359 (743)
Q Consensus 316 ~e~~~~~~~~~~e~~~l~~~l-~~~~~~~~el~~l~~~~~~l~~~ 359 (743)
+-++..+..++..+..-..++ ..+.-....+......+..+...
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (977)
T PLN02939 354 ELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEE 398 (977)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 435
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=63.04 E-value=5.1 Score=25.29 Aligned_cols=9 Identities=56% Similarity=1.221 Sum_probs=7.3
Q ss_pred CCCcCCCCC
Q 004587 724 RKCPGCAAS 732 (743)
Q Consensus 724 ~~Cp~c~~~ 732 (743)
..||+|+.+
T Consensus 19 ~~CP~Cg~~ 27 (34)
T cd00729 19 EKCPICGAP 27 (34)
T ss_pred CcCcCCCCc
Confidence 469999875
No 436
>PF14369 zf-RING_3: zinc-finger
Probab=63.01 E-value=2.2 Score=27.10 Aligned_cols=25 Identities=28% Similarity=0.774 Sum_probs=15.3
Q ss_pred ccHhhHHHHhc----cCCCCCcCCCCCCC
Q 004587 710 FCNPCVQKVTE----SRHRKCPGCAASFS 734 (743)
Q Consensus 710 fC~~C~~~~~~----~~~~~Cp~c~~~~~ 734 (743)
||..|-....- .....||.|+..|-
T Consensus 4 wCh~C~~~V~~~~~~~~~~~CP~C~~gFv 32 (35)
T PF14369_consen 4 WCHQCNRFVRIAPSPDSDVACPRCHGGFV 32 (35)
T ss_pred eCccCCCEeEeCcCCCCCcCCcCCCCcEe
Confidence 57777644421 12234999998874
No 437
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=62.72 E-value=2.3 Score=35.96 Aligned_cols=26 Identities=23% Similarity=0.637 Sum_probs=15.3
Q ss_pred cccccHhhHHHHhcc-CCCCCcCCCCC
Q 004587 707 YHLFCNPCVQKVTES-RHRKCPGCAAS 732 (743)
Q Consensus 707 gh~fC~~C~~~~~~~-~~~~Cp~c~~~ 732 (743)
+..+|..|-..+... ....||.|+.+
T Consensus 69 ~~~~C~~Cg~~~~~~~~~~~CP~Cgs~ 95 (115)
T TIGR00100 69 VECECEDCSEEVSPEIDLYRCPKCHGI 95 (115)
T ss_pred cEEEcccCCCEEecCCcCccCcCCcCC
Confidence 334466666554332 23459999976
No 438
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=62.44 E-value=1.5e+02 Score=28.41 Aligned_cols=14 Identities=7% Similarity=0.304 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 004587 471 QKLEAFKRDMVSLS 484 (743)
Q Consensus 471 ~~l~~~~~~~~~l~ 484 (743)
.....++.++.+..
T Consensus 27 q~f~~~reEl~EFQ 40 (333)
T KOG1853|consen 27 QHFLQMREELNEFQ 40 (333)
T ss_pred HHHHHHHHHHHHHh
Confidence 33333333333333
No 439
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=62.43 E-value=2.8 Score=40.98 Aligned_cols=28 Identities=32% Similarity=0.688 Sum_probs=15.8
Q ss_pred cccccHhhHHHHhccC---CCCCcCCCCCCC
Q 004587 707 YHLFCNPCVQKVTESR---HRKCPGCAASFS 734 (743)
Q Consensus 707 gh~fC~~C~~~~~~~~---~~~Cp~c~~~~~ 734 (743)
.|.||..|-....... .+.||.|+..+.
T Consensus 110 ~~RFCg~CG~~~~~~~~g~~~~C~~cg~~~f 140 (279)
T COG2816 110 SHRFCGRCGTKTYPREGGWARVCPKCGHEHF 140 (279)
T ss_pred hCcCCCCCCCcCccccCceeeeCCCCCCccC
Confidence 4666666666654322 245777776543
No 440
>PRK04179 rpl37e 50S ribosomal protein L37e; Reviewed
Probab=62.09 E-value=2.9 Score=30.05 Aligned_cols=25 Identities=24% Similarity=0.664 Sum_probs=21.9
Q ss_pred cccccHhhHHHHhccCCCCCcCCCC
Q 004587 707 YHLFCNPCVQKVTESRHRKCPGCAA 731 (743)
Q Consensus 707 gh~fC~~C~~~~~~~~~~~Cp~c~~ 731 (743)
-|++|..|-...+......|-.|+.
T Consensus 16 tHt~CrRCG~~syh~qK~~CasCGy 40 (62)
T PRK04179 16 THIRCRRCGRHSYNVRKKYCAACGF 40 (62)
T ss_pred ccchhcccCcccccccccchhhcCC
Confidence 5999999999988877778999987
No 441
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=62.00 E-value=4 Score=34.32 Aligned_cols=28 Identities=18% Similarity=0.282 Sum_probs=20.2
Q ss_pred cccHhhHHHHhccC--CCCCcCCCCCCCCC
Q 004587 709 LFCNPCVQKVTESR--HRKCPGCAASFSPN 736 (743)
Q Consensus 709 ~fC~~C~~~~~~~~--~~~Cp~c~~~~~~~ 736 (743)
..|..|-.+++..+ ...||.|+..|...
T Consensus 10 r~Cp~cg~kFYDLnk~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 10 RICPNTGSKFYDLNRRPAVSPYTGEQFPPE 39 (129)
T ss_pred ccCCCcCccccccCCCCccCCCcCCccCcc
Confidence 34778888886542 45799999988655
No 442
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=61.97 E-value=1.7e+02 Score=28.82 Aligned_cols=47 Identities=6% Similarity=0.152 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHhh
Q 004587 640 ELVKERFAKKRLEEDLEMGRRKVLRLQAQTEGSSIIEELQQELREYR 686 (743)
Q Consensus 640 ~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~e~~~l~ 686 (743)
.+..-...+..+-.++..++..+.+-.+.+.+++.+.++...+-.++
T Consensus 302 gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk 348 (384)
T KOG0972|consen 302 GVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLK 348 (384)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHH
Confidence 33333344444555555555555555555555555555555554444
No 443
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=61.76 E-value=92 Score=25.77 Aligned_cols=19 Identities=21% Similarity=0.406 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004587 557 IQQANASLNFFDMKAARIE 575 (743)
Q Consensus 557 l~~l~~~l~~~~~~~~~le 575 (743)
+..+..++..+...+..++
T Consensus 8 ~q~l~~~~~~l~~~~~~l~ 26 (105)
T cd00632 8 LQQLQQQLQAYIVQRQKVE 26 (105)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444433333333
No 444
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=61.51 E-value=5 Score=27.36 Aligned_cols=31 Identities=26% Similarity=0.610 Sum_probs=24.7
Q ss_pred cccccccccCCceeccCcccccHhhHHHHhcc
Q 004587 690 KCSICLERPKEVVITKCYHLFCNPCVQKVTES 721 (743)
Q Consensus 690 ~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~ 721 (743)
.|.||.....+ -+.-.|+.+|..|-..++..
T Consensus 1 ~CiiC~~~~~~-GI~I~~~fIC~~CE~~iv~~ 31 (46)
T PF10764_consen 1 KCIICGKEKEE-GIHIYGKFICSDCEKEIVNT 31 (46)
T ss_pred CeEeCCCcCCC-CEEEECeEehHHHHHHhccC
Confidence 49999987766 44457898899999998764
No 445
>PRK12495 hypothetical protein; Provisional
Probab=61.49 E-value=8.3 Score=35.97 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=8.0
Q ss_pred ccccccccccC
Q 004587 689 LKCSICLERPK 699 (743)
Q Consensus 689 ~~C~iC~~~~~ 699 (743)
..|++|+.++-
T Consensus 43 ~hC~~CG~PIp 53 (226)
T PRK12495 43 AHCDECGDPIF 53 (226)
T ss_pred hhcccccCccc
Confidence 68998887543
No 446
>PRK11032 hypothetical protein; Provisional
Probab=61.25 E-value=1.3e+02 Score=27.19 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=15.7
Q ss_pred eeccCcccccHhhHHHHhccCCCCCcCCCCC
Q 004587 702 VITKCYHLFCNPCVQKVTESRHRKCPGCAAS 732 (743)
Q Consensus 702 ~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~ 732 (743)
+...|||..+..--. .-+.||.|+..
T Consensus 126 vC~~Cg~~~~~~~p~-----~i~pCp~C~~~ 151 (160)
T PRK11032 126 VCEKCHHHLAFYTPE-----VLPLCPKCGHD 151 (160)
T ss_pred EecCCCCEEEecCCC-----cCCCCCCCCCC
Confidence 455788765442222 23569999865
No 447
>PHA00733 hypothetical protein
Probab=61.07 E-value=4.9 Score=34.73 Aligned_cols=14 Identities=29% Similarity=0.828 Sum_probs=10.9
Q ss_pred CCCCcCCCCCCCCC
Q 004587 723 HRKCPGCAASFSPN 736 (743)
Q Consensus 723 ~~~Cp~c~~~~~~~ 736 (743)
...||.|+..|...
T Consensus 99 ~~~C~~CgK~F~~~ 112 (128)
T PHA00733 99 SKVCPVCGKEFRNT 112 (128)
T ss_pred CccCCCCCCccCCH
Confidence 35799999998654
No 448
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=60.92 E-value=2.6 Score=35.47 Aligned_cols=24 Identities=29% Similarity=0.729 Sum_probs=13.3
Q ss_pred cccHhhHHHHhcc-CCCCCcCCCCC
Q 004587 709 LFCNPCVQKVTES-RHRKCPGCAAS 732 (743)
Q Consensus 709 ~fC~~C~~~~~~~-~~~~Cp~c~~~ 732 (743)
.+|..|-..+... ....||.|+.+
T Consensus 71 ~~C~~Cg~~~~~~~~~~~CP~Cgs~ 95 (113)
T PRK12380 71 AWCWDCSQVVEIHQHDAQCPHCHGE 95 (113)
T ss_pred EEcccCCCEEecCCcCccCcCCCCC
Confidence 3455565444332 23459999965
No 449
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=60.85 E-value=2.7e+02 Score=30.87 Aligned_cols=41 Identities=20% Similarity=0.137 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 623 SQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVL 663 (743)
Q Consensus 623 l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 663 (743)
++..+..+-..+-.-+..++.+..++..+.-.+..+...+.
T Consensus 390 lE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~ 430 (511)
T PF09787_consen 390 LESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLK 430 (511)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHH
Confidence 33344444444444455555555555555555555555544
No 450
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.85 E-value=5 Score=43.37 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=15.5
Q ss_pred ceeccCcccccHhhHHHHhc
Q 004587 701 VVITKCYHLFCNPCVQKVTE 720 (743)
Q Consensus 701 ~~~~~Cgh~fC~~C~~~~~~ 720 (743)
+|.=+|||.||+.|...+..
T Consensus 179 ~v~C~~g~~FC~~C~~~~H~ 198 (444)
T KOG1815|consen 179 EVDCGCGHEFCFACGEESHS 198 (444)
T ss_pred ceeCCCCchhHhhccccccC
Confidence 35558999999999877643
No 451
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=60.68 E-value=13 Score=35.45 Aligned_cols=54 Identities=19% Similarity=0.089 Sum_probs=47.7
Q ss_pred ccccccccccCCceeccCcccccHhhHHHHhccCCCCCcCCCCCCCCCCCcCcC
Q 004587 689 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 742 (743)
Q Consensus 689 ~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~ 742 (743)
+.|.|-+..+++||+.|-|-++-..=|...+..-.++=|+.|.++....+.|+|
T Consensus 212 lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~ 265 (284)
T KOG4642|consen 212 LCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNL 265 (284)
T ss_pred hhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccch
Confidence 678888999999999999999999888888775567889999999998888875
No 452
>KOG4080 consensus Mitochondrial ribosomal protein L32 [Translation, ribosomal structure and biogenesis]
Probab=60.53 E-value=4.3 Score=35.62 Aligned_cols=32 Identities=25% Similarity=0.546 Sum_probs=0.0
Q ss_pred HHHhhccccccccccccCCceeccCcccccHhhHHHHhc
Q 004587 682 LREYREILKCSICLERPKEVVITKCYHLFCNPCVQKVTE 720 (743)
Q Consensus 682 ~~~l~~~~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~ 720 (743)
++...+...||+|+..-. .|+.|..|......
T Consensus 87 Lk~k~nl~~CP~CGh~k~-------a~~LC~~Cy~kV~k 118 (176)
T KOG4080|consen 87 LKPKDNLNTCPACGHIKP-------AHTLCDYCYAKVHK 118 (176)
T ss_pred ccchhccccCcccCcccc-------ccccHHHHHHHHHH
No 453
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=60.48 E-value=2.2e+02 Score=29.72 Aligned_cols=127 Identities=13% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004587 453 AISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKL 532 (743)
Q Consensus 453 ~~~~~~l~~~e~~i~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~el~~~~~~l~~~~~~~~~~~~~l 532 (743)
..+..........+..+..++.........+..++..+..+-..+...+...+-++..++.++..+..+.-........+
T Consensus 2 ~~~~s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~ 81 (459)
T KOG0288|consen 2 APLYSQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTL 81 (459)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 533 VLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLR 579 (743)
Q Consensus 533 ~~e~~~~~~~~~~l~~e~~~l~~el~~l~~~l~~~~~~~~~le~~~~ 579 (743)
......+++..-....++..+..+-.....---.+............
T Consensus 82 t~~~~~~en~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~~r~~e~ 128 (459)
T KOG0288|consen 82 TVDVLIAENLRIRSLNEIRELREQKAEFENAELALREMRRKMRIAER 128 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHH
No 454
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=60.40 E-value=2.5 Score=40.51 Aligned_cols=49 Identities=24% Similarity=0.520 Sum_probs=0.0
Q ss_pred ccccccccccCCceeccCcccccHhhHHHHhccCCCCCcCCCCCCCCCCCcC
Q 004587 689 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKP 740 (743)
Q Consensus 689 ~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~ 740 (743)
+.|+.|+....+.++..=|.+||..=+...+. .+|..|...+....|.+
T Consensus 61 LkCs~C~~qL~drCFsR~~s~yCkedFfKrfG---TKCsaC~~GIpPtqVVR 109 (383)
T KOG4577|consen 61 LKCSDCHDQLADRCFSREGSVYCKEDFFKRFG---TKCSACQEGIPPTQVVR 109 (383)
T ss_pred cchhhhhhHHHHHHhhcCCceeehHHHHHHhC---CcchhhcCCCChHHHHH
No 455
>PRK04406 hypothetical protein; Provisional
Probab=60.38 E-value=76 Score=24.40 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004587 470 RQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERD 526 (743)
Q Consensus 470 ~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~el~~~~~~l~~~~~~~~ 526 (743)
...++.+..++.+|+.++.-.+.-++.|...+-...+.++.++.++..+..++..+.
T Consensus 3 ~~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 3 EKTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 456
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=60.23 E-value=3.9 Score=41.66 Aligned_cols=35 Identities=20% Similarity=0.585 Sum_probs=0.0
Q ss_pred cccc-cHhhH--HHHhccCCCCCcCCCCCCCCCCCcCcCC
Q 004587 707 YHLF-CNPCV--QKVTESRHRKCPGCAASFSPNDVKPVYI 743 (743)
Q Consensus 707 gh~f-C~~C~--~~~~~~~~~~Cp~c~~~~~~~~~~~~~~ 743 (743)
||++ |..|. ..........||.|+..|.- .-|+|+
T Consensus 238 g~~~~c~~cg~~~~~~~~~~~~c~~Cg~~~~~--~GPlW~ 275 (380)
T COG1867 238 GYIYHCSRCGEIVGSFREVDEKCPHCGGKVHL--AGPLWL 275 (380)
T ss_pred CcEEEcccccceecccccccccCCccccccee--ccCccc
No 457
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=60.13 E-value=3.1e+02 Score=31.41 Aligned_cols=205 Identities=14% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHH---HHHHHH
Q 004587 462 AEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQIT--ERDDYNI---KLVLEG 536 (743)
Q Consensus 462 ~e~~i~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~el~~~~~~l~~~~~--~~~~~~~---~l~~e~ 536 (743)
.......+...+......+..+...+......+..........-..+..+..+......... ..+.... -...+.
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 177 (670)
T KOG0239|consen 98 VEAYNERLRDLLSELQSNLSELNMALLESVEELSQAEEDNPSIFVSLLELAQENRGLYLDLSKVTPENSLSLLDLALKES 177 (670)
T ss_pred HHHHHHHHhhhccccccchhhhhhhhhhhhHhhhhhhcccccHHHHHHHHHhhhccccccccccchhhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Q 004587 537 VRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLR---FCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSS 613 (743)
Q Consensus 537 ~~~~~~~~~l~~e~~~l~~el~~l~~~l~~~~~~~~~le~~~~---~l~~~l~~l~~el~~~~~~l~~~~~~~~e~~~~~ 613 (743)
..+...+..+..++......+......+.........+++.+. .+...+..+..........+..++..+..+....
T Consensus 178 ~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~ 257 (670)
T KOG0239|consen 178 LKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAEL 257 (670)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Q 004587 614 VQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLE---EDLEMGRRKVLRLQ 666 (743)
Q Consensus 614 ~~l~~~l~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~---~~~~~l~~~~~~l~ 666 (743)
..+...+..+...+......+..+...+........... .....+...+..|+
T Consensus 258 ~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLk 313 (670)
T KOG0239|consen 258 KELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELK 313 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 458
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=59.93 E-value=11 Score=32.53 Aligned_cols=55 Identities=16% Similarity=0.373 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhcccccccccccc-CCceeccCcccccHhhHHHHhccCCCCCcCCCCCCCCCCCcCc
Q 004587 674 IIEELQQELREYREILKCSICLERP-KEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPV 741 (743)
Q Consensus 674 ~~~~l~~e~~~l~~~~~C~iC~~~~-~~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~ 741 (743)
.....-..+........||.|.... ...-...+|| ....||.|+..|...+-.+.
T Consensus 16 ~~~~~~~~~~~~~~~~~cP~C~s~~~~k~g~~~~~~-------------qRyrC~~C~~tf~~~~~~~~ 71 (129)
T COG3677 16 ALADAAYAIRMQITKVNCPRCKSSNVVKIGGIRRGH-------------QRYKCKSCGSTFTVETGSPL 71 (129)
T ss_pred HHHHHHHHHhhhcccCcCCCCCccceeeECCccccc-------------cccccCCcCcceeeeccCcc
No 459
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=59.91 E-value=69 Score=23.77 Aligned_cols=62 Identities=19% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004587 493 EIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMME 554 (743)
Q Consensus 493 e~~~l~~e~~~l~~~~~el~~~~~~l~~~~~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~ 554 (743)
++..+...++.+-..+..+..++..|..+......+-..+......+...+..+...+..++
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
No 460
>PHA02565 49 recombination endonuclease VII; Provisional
Probab=59.78 E-value=3 Score=36.51 Aligned_cols=43 Identities=21% Similarity=0.219 Sum_probs=0.0
Q ss_pred cccccccccCCceeccCcccc-cHhhHHHHhcc-CCCCCcCCCCCCC
Q 004587 690 KCSICLERPKEVVITKCYHLF-CNPCVQKVTES-RHRKCPGCAASFS 734 (743)
Q Consensus 690 ~C~iC~~~~~~~~~~~Cgh~f-C~~C~~~~~~~-~~~~Cp~c~~~~~ 734 (743)
.|+||..++..++... |+- |..|...+... |...||.|+...+
T Consensus 22 ~CaiC~~~l~~~~~~~--~vDHDH~l~g~~TG~VRGLLC~~CN~~lG 66 (157)
T PHA02565 22 ICPLCKRELDGDVSKN--HLDHDHELNGPNAGRVRGLLCNLCNALEG 66 (157)
T ss_pred cCCCCCCccCCCcccc--ccCCCCCCCCcccccccccCchhhhhhhh
No 461
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=59.77 E-value=2.4e+02 Score=29.93 Aligned_cols=204 Identities=10% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHhhhhHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhHHHHHHHHHHH
Q 004587 432 LKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFK----------RDMVSLSDALKSKNEEIEAYLSEI 501 (743)
Q Consensus 432 l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~e~~i~~l~~~l~~~~----------~~~~~l~~~l~~~~~e~~~l~~e~ 501 (743)
|...+.--+. +..+......-+..|..++-.-.-|...+.+++ .=+..|...+.++-...=...-+.
T Consensus 309 leedmaLNEv---L~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEK 385 (527)
T PF15066_consen 309 LEEDMALNEV---LQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEK 385 (527)
T ss_pred cHHHHHHHHH---HHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 502 ETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFC 581 (743)
Q Consensus 502 ~~l~~~~~el~~~~~~l~~~~~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~el~~l~~~l~~~~~~~~~le~~~~~l 581 (743)
..+.+.+..++.-.......+.+-+.+...|+.++.+....|-.|+..-..--.+......+.-+...-+..-++.+..+
T Consensus 386 nd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverL 465 (527)
T PF15066_consen 386 NDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERL 465 (527)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHH
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004587 582 LDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIEL 641 (743)
Q Consensus 582 ~~~l~~l~~el~~~~~~l~~~~~~~~e~~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~~l 641 (743)
..--..++ ....+.++-++++-...+++.-.+.......++..-+-+..++..-..+
T Consensus 466 Q~lkgelE---kat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~leKL 522 (527)
T PF15066_consen 466 QQLKGELE---KATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKL 522 (527)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
No 462
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=59.69 E-value=3.9 Score=23.68 Aligned_cols=9 Identities=44% Similarity=1.202 Sum_probs=0.0
Q ss_pred CCcCCCCCC
Q 004587 725 KCPGCAASF 733 (743)
Q Consensus 725 ~Cp~c~~~~ 733 (743)
.||.|+..|
T Consensus 4 ~C~~CgR~F 12 (25)
T PF13913_consen 4 PCPICGRKF 12 (25)
T ss_pred cCCCCCCEE
No 463
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=59.55 E-value=66 Score=24.22 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004587 475 AFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERD 526 (743)
Q Consensus 475 ~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~el~~~~~~l~~~~~~~~ 526 (743)
.++..+.+|+.++.-.+.-++.|...+-...+.++.++.++..+..++..+.
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 464
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=59.30 E-value=7.3 Score=27.69 Aligned_cols=27 Identities=33% Similarity=0.518 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhhccc-cccccccccC
Q 004587 673 SIIEELQQELREYREIL-KCSICLERPK 699 (743)
Q Consensus 673 ~~~~~l~~e~~~l~~~~-~C~iC~~~~~ 699 (743)
.....+...+..+...- .||+|+.+|.
T Consensus 4 ~~~~~~~k~i~~l~~~~~~CPlC~r~l~ 31 (54)
T PF04423_consen 4 SEIEELKKYIEELKEAKGCCPLCGRPLD 31 (54)
T ss_dssp HHHHHHHHHHHHHTT-SEE-TTT--EE-
T ss_pred HHHHHHHHHHHHHhcCCCcCCCCCCCCC
No 465
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=59.29 E-value=72 Score=23.75 Aligned_cols=64 Identities=17% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHhHhhhHHHHHHHHHHHHHhhhh--hhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 184 HQLLELKGLHDGRIKVLQQLYNLQNTLKS--VKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQ 247 (743)
Q Consensus 184 ~~~~e~~~l~~e~~~l~~el~~l~~~l~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~ 247 (743)
+...++.++.++...+..++..+...+.+ ........-...-...+..+...+..+...+..|.
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 466
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=59.26 E-value=3.1 Score=49.71 Aligned_cols=52 Identities=21% Similarity=0.491 Sum_probs=0.0
Q ss_pred cccccccccCCc-eeccCcccccHhhHHHHhccCCCCCcCCCCCCCCCCCcCcC
Q 004587 690 KCSICLERPKEV-VITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 742 (743)
Q Consensus 690 ~C~iC~~~~~~~-~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~ 742 (743)
.|.-|...+... ....||.+||..|.+.... +.+.|..|+..+...++.+.|
T Consensus 7 ~~~~~~t~~~~~~~~~~~g~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~ 59 (1598)
T KOG0230|consen 7 VCYDCDTSVNRRHHCRVCGRVFCSKCQDSPET-SIRVCNECRGQWEQGNVAPSD 59 (1598)
T ss_pred chhccccccccCCCCcccCceeccccCCCCcc-ceeehhhhhhhccccCCCCcc
No 468
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=59.26 E-value=3.3 Score=38.13 Aligned_cols=28 Identities=25% Similarity=0.666 Sum_probs=0.0
Q ss_pred ccHhhHHHH----hccCCCCCcCCCCCCCCCC
Q 004587 710 FCNPCVQKV----TESRHRKCPGCAASFSPND 737 (743)
Q Consensus 710 fC~~C~~~~----~~~~~~~Cp~c~~~~~~~~ 737 (743)
+|..|..+| .......||.||.++..-|
T Consensus 119 ~Cp~C~~rytf~eA~~~~F~Cp~Cg~~L~~~d 150 (178)
T PRK06266 119 FCPNCHIRFTFDEAMEYGFRCPQCGEMLEEYD 150 (178)
T ss_pred ECCCCCcEEeHHHHhhcCCcCCCCCCCCeecc
No 469
>PRK01343 zinc-binding protein; Provisional
Probab=59.21 E-value=7.1 Score=27.84 Aligned_cols=17 Identities=24% Similarity=0.599 Sum_probs=0.0
Q ss_pred CCCCCcCCCCCCCCCCC
Q 004587 722 RHRKCPGCAASFSPNDV 738 (743)
Q Consensus 722 ~~~~Cp~c~~~~~~~~~ 738 (743)
+...||+|++++....+
T Consensus 8 p~~~CP~C~k~~~~~~r 24 (57)
T PRK01343 8 PTRPCPECGKPSTREAY 24 (57)
T ss_pred CCCcCCCCCCcCcCCCC
No 470
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=59.06 E-value=1.7e+02 Score=28.09 Aligned_cols=166 Identities=11% Similarity=0.106 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------------------HHHHHh
Q 004587 490 KNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQ--------------------DALLMD 549 (743)
Q Consensus 490 ~~~e~~~l~~e~~~l~~~~~el~~~~~~l~~~~~~~~~~~~~l~~e~~~~~~~~--------------------~~l~~e 549 (743)
+...+..|...-..+.....+....-.-+..++...+.++..+...+..+.+.. ..+..+
T Consensus 106 l~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~e 185 (330)
T KOG2991|consen 106 LSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGE 185 (330)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhHHhHHHHHHHHHHHHHH
Q 004587 550 KHMMESEIQQANASLNF------------FDMKAARIENQLRFCL-----DQAQRLAEDRSQNSANLENTQKRLSDVRKS 612 (743)
Q Consensus 550 ~~~l~~el~~l~~~l~~------------~~~~~~~le~~~~~l~-----~~l~~l~~el~~~~~~l~~~~~~~~e~~~~ 612 (743)
+......+..++..+.. +-.+..-+......+- ..+..++-++.-.++.-+.++..-.++..-
T Consensus 186 le~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~df 265 (330)
T KOG2991|consen 186 LEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDF 265 (330)
T ss_pred HHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHH
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 613 SVQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDL 655 (743)
Q Consensus 613 ~~~l~~~l~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 655 (743)
+.+|...++.++..+--++..+.+...++..+......+..-+
T Consensus 266 m~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav 308 (330)
T KOG2991|consen 266 MEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAV 308 (330)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 471
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=58.86 E-value=71 Score=29.20 Aligned_cols=66 Identities=18% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 173 SVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQV 248 (743)
Q Consensus 173 ~~l~~l~~~~~~~~~e~~~l~~e~~~l~~el~~l~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~ 248 (743)
.++..+...+..+..++..+..+...+..++..+....... .+...+..+..++..+..++..+..
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~----------el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNE----------ELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHh
No 472
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=58.79 E-value=8.4 Score=42.73 Aligned_cols=52 Identities=13% Similarity=0.245 Sum_probs=0.0
Q ss_pred ccccccccCCceec--cCcccccHhhHHHHhccCCCCCcC--CCCCCCCCCCcCcCC
Q 004587 691 CSICLERPKEVVIT--KCYHLFCNPCVQKVTESRHRKCPG--CAASFSPNDVKPVYI 743 (743)
Q Consensus 691 C~iC~~~~~~~~~~--~Cgh~fC~~C~~~~~~~~~~~Cp~--c~~~~~~~~~~~~~~ 743 (743)
|.+|....+...+. .|||.--.+|+..|+- ....||. |+.......+..-|.
T Consensus 782 CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~-~~s~ca~~~C~~~c~~~~~~D~~~ 837 (839)
T KOG0269|consen 782 CTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFF-KASPCAKSICPHLCHYSSFIDTFM 837 (839)
T ss_pred ceeecceeeeeEeecccccccccHHHHHHHHh-cCCCCccccCCccccccccchhhh
No 473
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=58.74 E-value=8.9 Score=42.21 Aligned_cols=75 Identities=16% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHhhccccccccccccCCceec--------cCccc------------c-c
Q 004587 653 EDLEMGRRKVLRLQAQTEGSSIIEELQQELREYREILKCSICLERPKEVVIT--------KCYHL------------F-C 711 (743)
Q Consensus 653 ~~~~~l~~~~~~l~~~~~~~~~~~~l~~e~~~l~~~~~C~iC~~~~~~~~~~--------~Cgh~------------f-C 711 (743)
..+..++.-+.-...+.... +.|+.|...|....-| +||-. | |
T Consensus 221 krltslkeHikyrhekne~n----------------fsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKC 284 (1007)
T KOG3623|consen 221 KRLTSLKEHIKYRHEKNEPN----------------FSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKC 284 (1007)
T ss_pred HHHHHHHHHHHHHHhhCCCC----------------CcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccc
Q ss_pred HhhHHHHhcc-------------CCCCCcCCCCCCCCCCCcCcCC
Q 004587 712 NPCVQKVTES-------------RHRKCPGCAASFSPNDVKPVYI 743 (743)
Q Consensus 712 ~~C~~~~~~~-------------~~~~Cp~c~~~~~~~~~~~~~~ 743 (743)
..|-+.+... ...-||.|++.|...--..-++
T Consensus 285 tECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHm 329 (1007)
T KOG3623|consen 285 TECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHM 329 (1007)
T ss_pred cccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCcccccc
No 474
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=58.58 E-value=3.2 Score=23.73 Aligned_cols=21 Identities=24% Similarity=0.781 Sum_probs=0.0
Q ss_pred cHhh---HHHHhccCCCCCcCCCC
Q 004587 711 CNPC---VQKVTESRHRKCPGCAA 731 (743)
Q Consensus 711 C~~C---~~~~~~~~~~~Cp~c~~ 731 (743)
|.+| +...-..-...||.|+.
T Consensus 1 C~sC~~~i~~r~~~v~f~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPFPCPNCGF 24 (24)
T ss_pred CccCCCcccCcccCceEeCCCCCC
No 475
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=58.56 E-value=5.3 Score=31.87 Aligned_cols=14 Identities=29% Similarity=0.873 Sum_probs=0.0
Q ss_pred CCCCCcCCCCCCCC
Q 004587 722 RHRKCPGCAASFSP 735 (743)
Q Consensus 722 ~~~~Cp~c~~~~~~ 735 (743)
+...||.||.+|..
T Consensus 48 G~t~CP~Cg~~~e~ 61 (115)
T COG1885 48 GSTSCPKCGEPFES 61 (115)
T ss_pred ccccCCCCCCccce
No 476
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=58.52 E-value=2.8 Score=37.80 Aligned_cols=28 Identities=21% Similarity=0.453 Sum_probs=0.0
Q ss_pred ccHhhHHHH----hccCCCCCcCCCCCCCCCC
Q 004587 710 FCNPCVQKV----TESRHRKCPGCAASFSPND 737 (743)
Q Consensus 710 fC~~C~~~~----~~~~~~~Cp~c~~~~~~~~ 737 (743)
+|..|..++ .-.....||.||.++..-|
T Consensus 111 ~Cp~c~~r~tf~eA~~~~F~Cp~Cg~~L~~~d 142 (158)
T TIGR00373 111 ICPNMCVRFTFNEAMELNFTCPRCGAMLDYLD 142 (158)
T ss_pred ECCCCCcEeeHHHHHHcCCcCCCCCCEeeecc
No 477
>KOG2463 consensus Predicted RNA-binding protein Nob1p involved in 26S proteasome assembly [Posttranslational modification, protein turnover, chaperones]
Probab=58.41 E-value=2.4 Score=41.76 Aligned_cols=24 Identities=25% Similarity=0.733 Sum_probs=0.0
Q ss_pred cccc-cHhhHHHHhccCCCCCcCCC
Q 004587 707 YHLF-CNPCVQKVTESRHRKCPGCA 730 (743)
Q Consensus 707 gh~f-C~~C~~~~~~~~~~~Cp~c~ 730 (743)
.|+. |..|+.-.......+||.||
T Consensus 240 ~~iLRCh~Cfsit~~m~k~FCp~CG 264 (376)
T KOG2463|consen 240 SYILRCHGCFSITSEMPKDFCPSCG 264 (376)
T ss_pred hheeEeeeeeEecCccchhcccccC
No 478
>COG1773 Rubredoxin [Energy production and conversion]
Probab=58.39 E-value=5 Score=28.31 Aligned_cols=51 Identities=14% Similarity=0.267 Sum_probs=0.0
Q ss_pred ccccccccccccCCceeccCcccccHhhHHHHhccCCCCCcCCCCCCCCCCCcCc
Q 004587 687 EILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPV 741 (743)
Q Consensus 687 ~~~~C~iC~~~~~~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~ 741 (743)
....|.+|+-.|..-.=-+=.-+-=-.+...+-. +-.||.|+. ...++.++
T Consensus 2 ~~~~C~~CG~vYd~e~Gdp~~gi~pgT~fedlPd--~w~CP~Cg~--~K~~F~~~ 52 (55)
T COG1773 2 KRWRCSVCGYVYDPEKGDPRCGIAPGTPFEDLPD--DWVCPECGV--GKKDFEMI 52 (55)
T ss_pred CceEecCCceEeccccCCccCCCCCCCchhhCCC--ccCCCCCCC--CHhHeeec
No 479
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=58.33 E-value=5.1 Score=26.33 Aligned_cols=24 Identities=21% Similarity=0.591 Sum_probs=0.0
Q ss_pred ccccccccCCceecc---CcccccHhh
Q 004587 691 CSICLERPKEVVITK---CYHLFCNPC 714 (743)
Q Consensus 691 C~iC~~~~~~~~~~~---Cgh~fC~~C 714 (743)
||+|.-.-+-.+... =||.||..|
T Consensus 6 CP~CGG~DrFri~~d~~~~G~~~C~~C 32 (40)
T PF08273_consen 6 CPICGGKDRFRIFDDKDGRGTWICRQC 32 (40)
T ss_dssp -TTTT-TTTEEEETT----S-EEETTT
T ss_pred CCCCcCccccccCcCcccCCCEECCCC
No 480
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=58.15 E-value=2.4e+02 Score=29.44 Aligned_cols=128 Identities=12% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004587 466 IADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDA 545 (743)
Q Consensus 466 i~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~el~~~~~~l~~~~~~~~~~~~~l~~e~~~~~~~~~~ 545 (743)
+..+..........+..+...+.........+.++...+..+...+.......+..+..++.++..+..++.........
T Consensus 1 m~~~~s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~ 80 (459)
T KOG0288|consen 1 MAPLYSQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKT 80 (459)
T ss_pred CchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 546 LLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRS 593 (743)
Q Consensus 546 l~~e~~~l~~el~~l~~~l~~~~~~~~~le~~~~~l~~~l~~l~~el~ 593 (743)
+...+..++..--....++.++..+-..+....-.+......+.....
T Consensus 81 ~t~~~~~~en~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~~r~~e~ 128 (459)
T KOG0288|consen 81 LTVDVLIAENLRIRSLNEIRELREQKAEFENAELALREMRRKMRIAER 128 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHH
No 481
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.08 E-value=7.3 Score=28.21 Aligned_cols=20 Identities=20% Similarity=0.474 Sum_probs=0.0
Q ss_pred CCCCcCCCCCCCCCCCcCcC
Q 004587 723 HRKCPGCAASFSPNDVKPVY 742 (743)
Q Consensus 723 ~~~Cp~c~~~~~~~~~~~~~ 742 (743)
.+.||+|++++.-....+.+
T Consensus 7 ~v~CP~Cgkpv~w~~~s~fr 26 (65)
T COG3024 7 TVPCPTCGKPVVWGEESPFR 26 (65)
T ss_pred cccCCCCCCcccccccCCcC
No 482
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=57.76 E-value=1.1e+02 Score=25.52 Aligned_cols=82 Identities=17% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHhhHHHHHH----------------------HHHHHHHHHHHHHHHH
Q 004587 584 QAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQS----------------------KVYKSRLTLMELQIEL 641 (743)
Q Consensus 584 ~l~~l~~el~~~~~~l~~~~~~~~e~~~~~~~l~~~l~~l~~----------------------~~~~~~~~l~~~~~~l 641 (743)
.+..+...+..++..+..+...+..+...+.++...++.+.. ....+..++..+...+
T Consensus 4 ~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i 83 (110)
T TIGR02338 4 QVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRV 83 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 642 VKERFAKKRLEEDLEMGRRKVLRL 665 (743)
Q Consensus 642 ~~~~~~~~~~~~~~~~l~~~~~~l 665 (743)
..+......+...+..++..+..+
T Consensus 84 ~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 84 KTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 483
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=57.52 E-value=1.1e+02 Score=25.14 Aligned_cols=70 Identities=19% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 503 TIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAA 572 (743)
Q Consensus 503 ~l~~~~~el~~~~~~l~~~~~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~el~~l~~~l~~~~~~~~ 572 (743)
.+-.+|..+..++.-|..-+-+-+.....|...+...++.+..++.++..+...-.++...+..++..+.
T Consensus 2 kla~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 2 KLAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=57.41 E-value=5.2 Score=28.77 Aligned_cols=25 Identities=24% Similarity=0.782 Sum_probs=0.0
Q ss_pred cHhhHHHHhccCCCCCcCCCCC-CCCC
Q 004587 711 CNPCVQKVTESRHRKCPGCAAS-FSPN 736 (743)
Q Consensus 711 C~~C~~~~~~~~~~~Cp~c~~~-~~~~ 736 (743)
|..|.. +.......||+|+.+ |..+
T Consensus 7 C~~Ck~-l~~~d~e~CP~Cgs~~~te~ 32 (64)
T COG2093 7 CKNCKR-LTPEDTEICPVCGSTDLTEE 32 (64)
T ss_pred Hhhccc-cCCCCCccCCCCCCcccchh
No 485
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=57.35 E-value=84 Score=26.13 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 004587 479 DMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVL 534 (743)
Q Consensus 479 ~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~el~~~~~~l~~~~~~~~~~~~~l~~ 534 (743)
+..++-..+..++..+..+..++..+...+.++-.++..|.-+...++..+..+..
T Consensus 2 dk~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 2 DKKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 486
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=57.17 E-value=82 Score=23.74 Aligned_cols=52 Identities=8% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004587 454 ISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIG 505 (743)
Q Consensus 454 ~~~~~l~~~e~~i~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~ 505 (743)
.+..+|..++..+......++.+...+......|..++..+..+...+..+.
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 487
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=57.13 E-value=5.3 Score=29.51 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=0.0
Q ss_pred ccccccc-cCCceeccCccccc
Q 004587 691 CSICLER-PKEVVITKCYHLFC 711 (743)
Q Consensus 691 C~iC~~~-~~~~~~~~Cgh~fC 711 (743)
|.+|... ....+-+.|||++|
T Consensus 1 C~~C~~~~~~lw~CL~Cg~~~C 22 (63)
T PF02148_consen 1 CSVCGSTNSNLWLCLTCGYVGC 22 (63)
T ss_dssp -SSSHTCSSSEEEETTTS-EEE
T ss_pred CCCCCCcCCceEEeCCCCcccc
No 488
>PF14992 TMCO5: TMCO5 family
Probab=57.09 E-value=2.1e+02 Score=28.40 Aligned_cols=159 Identities=16% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 503 TIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCL 582 (743)
Q Consensus 503 ~l~~~~~el~~~~~~l~~~~~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~el~~l~~~l~~~~~~~~~le~~~~~l~ 582 (743)
.+.+....+...+..+...+.+.+..+..|..++.........- .....=...-...+..+....+.++.....+.
T Consensus 8 dle~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~----e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~ 83 (280)
T PF14992_consen 8 DLEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRS----EEEDIISEERETDLQELELETAKLEKENEHLS 83 (280)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCch----hHHhhhhhchHHHHHHHHhhhHHHhhhhHhhh
Q ss_pred HHHHHHHHHHHhhHHhH----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 583 DQAQRLAEDRSQNSANL----ENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMG 658 (743)
Q Consensus 583 ~~l~~l~~el~~~~~~l----~~~~~~~~e~~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l 658 (743)
..+..+...+......+ ..+...+......+..+...+...++++.++.........-..+.-..+.++++.+..+
T Consensus 84 ~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rm 163 (280)
T PF14992_consen 84 KSVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRM 163 (280)
T ss_pred hhhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 004587 659 RRKVLRL 665 (743)
Q Consensus 659 ~~~~~~l 665 (743)
+...+.+
T Consensus 164 E~ekE~~ 170 (280)
T PF14992_consen 164 EEEKEML 170 (280)
T ss_pred HHHHHHH
No 489
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=57.06 E-value=64 Score=22.96 Aligned_cols=42 Identities=21% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004587 479 DMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQ 520 (743)
Q Consensus 479 ~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~el~~~~~~l~~ 520 (743)
.+.+++..+..+...+..+..+.+.++..++.+....+.+..
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~ 42 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLS 42 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=57.00 E-value=3.4 Score=35.74 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=0.0
Q ss_pred cccccc-----ccCCceeccCcccccHhhHHHHhccCCCCCcCCCCCC
Q 004587 691 CSICLE-----RPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASF 733 (743)
Q Consensus 691 C~iC~~-----~~~~~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~ 733 (743)
||+|+. ......+.-||+.+-. .+..|+ ||.|+..|
T Consensus 1 C~~C~~~~~~~~~~~~~~~~~G~~~~v-~~~~~~------C~~CGe~~ 41 (127)
T TIGR03830 1 CPICGSGELVRDVKDEPYTYKGESITI-GVPGWY------CPACGEEL 41 (127)
T ss_pred CCCCCCccceeeeecceEEEcCEEEEE-eeeeeE------CCCCCCEE
No 491
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=56.89 E-value=7.7 Score=24.87 Aligned_cols=37 Identities=19% Similarity=0.540 Sum_probs=0.0
Q ss_pred cccccccccCC--ceeccCcccccHhhHHHHhccCCCCCcCCCCCCCC
Q 004587 690 KCSICLERPKE--VVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSP 735 (743)
Q Consensus 690 ~C~iC~~~~~~--~~~~~Cgh~fC~~C~~~~~~~~~~~Cp~c~~~~~~ 735 (743)
.|+.|...+.. .++..=|+.|-..|+. |..|+.+|..
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~---------C~~C~~~L~~ 39 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPECFK---------CSKCGKPLGG 39 (39)
T ss_pred CccccCCcccCCcEEEEeCCccccccCCC---------CcccCCcCcc
No 492
>PF05766 NinG: Bacteriophage Lambda NinG protein; InterPro: IPR008713 The ninR region of phage lambda contains two recombination genes, ninB (also known as orf) and ninG (also known as rap). These genes are involved in the RecF and RecBCD recombination pathways of Escherichia coli that operate on phage lambda [, ]. NinB and NinG participate in Red recombination, the primary pathway operating when wild-type lambda grows lytically in rec+ cells [].
Probab=56.89 E-value=30 Score=31.94 Aligned_cols=96 Identities=16% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHhh-ccccccccccccCCceeccCcccccH-hhHH
Q 004587 639 IELVKERFAKKRLEEDLEMGRRKVLRLQAQTEGSSIIEELQQELREYR-EILKCSICLERPKEVVITKCYHLFCN-PCVQ 716 (743)
Q Consensus 639 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~e~~~l~-~~~~C~iC~~~~~~~~~~~Cgh~fC~-~C~~ 716 (743)
...............+-..++.+-..++....-....+..-..+=.++ ....|..|+. ..+..+.|||-+-. ..-.
T Consensus 37 ~~~k~~k~~k~~~k~eR~~~~~rk~~lk~~~~~~~~aq~afn~~IR~RD~~~~CiSCG~--~~~~~~dagHy~s~g~~~~ 114 (189)
T PF05766_consen 37 AEKKREKKRKKAEKEERAELKARKEALKPRSDWLKEAQKAFNKYIRLRDAGKPCISCGR--KHGGQWDAGHYRSRGAAPE 114 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCcccCCC--cCCCCcccccccccccCcc
Q ss_pred HHhccCCCC--CcCCCCCCCCC
Q 004587 717 KVTESRHRK--CPGCAASFSPN 736 (743)
Q Consensus 717 ~~~~~~~~~--Cp~c~~~~~~~ 736 (743)
-.+...+.. |..|+..++.+
T Consensus 115 lRF~~~N~~~qC~~CN~~~sgn 136 (189)
T PF05766_consen 115 LRFNEDNIHAQCKHCNRHLSGN 136 (189)
T ss_pred cccChhhHhHcCCccccccccC
No 493
>PF13834 DUF4193: Domain of unknown function (DUF4193)
Probab=56.84 E-value=3.6 Score=32.93 Aligned_cols=28 Identities=18% Similarity=0.497 Sum_probs=0.0
Q ss_pred ccccccccccccCCceeccC--cccccHhh
Q 004587 687 EILKCSICLERPKEVVITKC--YHLFCNPC 714 (743)
Q Consensus 687 ~~~~C~iC~~~~~~~~~~~C--gh~fC~~C 714 (743)
..|+|+.|+-.....-+-.= |+.+|..|
T Consensus 69 DEFTCssCFLV~HRSqLa~~~~g~~iC~DC 98 (99)
T PF13834_consen 69 DEFTCSSCFLVHHRSQLAREKDGQPICRDC 98 (99)
T ss_pred CceeeeeeeeEechhhhccccCCCEecccc
No 494
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=56.51 E-value=3.5 Score=34.81 Aligned_cols=26 Identities=38% Similarity=0.824 Sum_probs=0.0
Q ss_pred cccccHhhHHHHhcc--CCCCCcCCCCC
Q 004587 707 YHLFCNPCVQKVTES--RHRKCPGCAAS 732 (743)
Q Consensus 707 gh~fC~~C~~~~~~~--~~~~Cp~c~~~ 732 (743)
+..+|..|-..+... ....||.|+.+
T Consensus 69 ~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~ 96 (114)
T PRK03681 69 AECWCETCQQYVTLLTQRVRRCPQCHGD 96 (114)
T ss_pred cEEEcccCCCeeecCCccCCcCcCcCCC
No 495
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=56.26 E-value=2.6e+02 Score=29.28 Aligned_cols=214 Identities=13% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 004587 454 ISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLV 533 (743)
Q Consensus 454 ~~~~~l~~~e~~i~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~el~~~~~~l~~~~~~~~~~~~~l~ 533 (743)
++..++..++..+.++...-......-..+....-.+......|.+.+....-...+.-.+-.+...++--...+...++
T Consensus 219 di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle 298 (502)
T KOG0982|consen 219 DIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLE 298 (502)
T ss_pred hHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Q 004587 534 LEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSS 613 (743)
Q Consensus 534 ~e~~~~~~~~~~l~~e~~~l~~el~~l~~~l~~~~~~~~~le~~~~~l~~~l~~l~~el~~~~~~l~~~~~~~~e~~~~~ 613 (743)
.+...+.-. .+..+...++..+..+....+.+........+.+..+..++.-...........+..+...-...+.-+
T Consensus 299 ~Enlqmr~q--qleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELi 376 (502)
T KOG0982|consen 299 KENLQMRDQ--QLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELI 376 (502)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q ss_pred HHHHhhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004587 614 VQVRGSLEESQSKVYKSR--------LTLMELQIELVKERFAKKRLEEDLEMGRRKVLRLQAQT 669 (743)
Q Consensus 614 ~~l~~~l~~l~~~~~~~~--------~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 669 (743)
.++...+.-++...-.+. .+..++..++..++.....+.++-..+...+-.+....
T Consensus 377 eelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~nr~l~eqneelngtilTls~q~ 440 (502)
T KOG0982|consen 377 EELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQPNRILSEQNEELNGTILTLSTQF 440 (502)
T ss_pred HHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhccccchhhhhhhhhhhhhhhHHHHH
No 496
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.95 E-value=3.9 Score=33.81 Aligned_cols=33 Identities=21% Similarity=0.404 Sum_probs=0.0
Q ss_pred cccccccccccCCc----eeccCcc-----cccHhhHHHHhc
Q 004587 688 ILKCSICLERPKEV----VITKCYH-----LFCNPCVQKVTE 720 (743)
Q Consensus 688 ~~~C~iC~~~~~~~----~~~~Cgh-----~fC~~C~~~~~~ 720 (743)
...||+|....+.. -++.=|| +||..|-.++-+
T Consensus 39 i~qcp~csasirgd~~vegvlglg~dye~psfchncgs~fpw 80 (160)
T COG4306 39 ITQCPICSASIRGDYYVEGVLGLGGDYEPPSFCHNCGSRFPW 80 (160)
T ss_pred HhcCCccCCcccccceeeeeeccCCCCCCcchhhcCCCCCCc
No 497
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=55.87 E-value=2.7e+02 Score=29.38 Aligned_cols=104 Identities=13% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 004587 480 MVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQ 559 (743)
Q Consensus 480 ~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~el~~~~~~l~~~~~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~el~~ 559 (743)
+..+..++.++......+...++.+. ..+..+..-+.+.+.+-.-+...|...+..+. .-.+.|+..|+.++..
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk---~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~---elHq~Ei~~LKqeLa~ 287 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLK---EQYQREYQFILEALQEERYRYERLEEQLNDLT---ELHQNEIYNLKQELAS 287 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 004587 560 ANASLNFF-DMKAARIENQLRFCLDQAQRLA 589 (743)
Q Consensus 560 l~~~l~~~-~~~~~~le~~~~~l~~~l~~l~ 589 (743)
+...+... +.+..++.+.+..+...+.+++
T Consensus 288 ~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 288 MEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
No 498
>PHA00626 hypothetical protein
Probab=55.66 E-value=3.3 Score=28.93 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=0.0
Q ss_pred cCcc--cc-cHhhHHHHhccCCCCCcCCCCCCCCCCC
Q 004587 705 KCYH--LF-CNPCVQKVTESRHRKCPGCAASFSPNDV 738 (743)
Q Consensus 705 ~Cgh--~f-C~~C~~~~~~~~~~~Cp~c~~~~~~~~~ 738 (743)
.||+ +. |..|-..... ..||-|+..|+..-+
T Consensus 5 ~CGS~~Ivrcg~cr~~snr---YkCkdCGY~ft~~~~ 38 (59)
T PHA00626 5 KCGSGNIAKEKTMRGWSDD---YVCCDCGYNDSKDAF 38 (59)
T ss_pred CCCCceeeeeceecccCcc---eEcCCCCCeechhhh
No 499
>PTZ00073 60S ribosomal protein L37; Provisional
Probab=55.40 E-value=4.4 Score=31.57 Aligned_cols=25 Identities=20% Similarity=0.748 Sum_probs=0.0
Q ss_pred ccccHhhHHHHhccCCCCCcCCCCC
Q 004587 708 HLFCNPCVQKVTESRHRKCPGCAAS 732 (743)
Q Consensus 708 h~fC~~C~~~~~~~~~~~Cp~c~~~ 732 (743)
|++|..|-...+......|-.|+.|
T Consensus 16 HtlCrRCG~~syH~qK~~CasCGyp 40 (91)
T PTZ00073 16 HTLCRRCGKRSFHVQKKRCASCGYP 40 (91)
T ss_pred cchhcccCccccccccccchhcCCc
No 500
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=55.03 E-value=9.8 Score=31.51 Aligned_cols=40 Identities=35% Similarity=0.841 Sum_probs=0.0
Q ss_pred cccccccccCCceeccC------------cccccHhh--------HHHHhccCCCCCcCCC
Q 004587 690 KCSICLERPKEVVITKC------------YHLFCNPC--------VQKVTESRHRKCPGCA 730 (743)
Q Consensus 690 ~C~iC~~~~~~~~~~~C------------gh~fC~~C--------~~~~~~~~~~~Cp~c~ 730 (743)
+|-.|.....+.. +.| .=.||..| +........-.||.|+
T Consensus 9 ~CHqCrqKt~~~~-~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Cr 68 (105)
T PF10497_consen 9 TCHQCRQKTLDFK-TICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCR 68 (105)
T ss_pred CchhhcCCCCCCc-eEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCC
Done!