Query 004587
Match_columns 743
No_of_seqs 301 out of 2917
Neff 10.3
Searched_HMMs 29240
Date Tue Mar 26 18:45:17 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004587.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1886-1890//hhsearch_pdb/004587hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c2l_A CHIP, carboxy terminus 1.0 1 1 115.9 2.9 56 687-742 207-262 (281)
2 2f42_A STIP1 homology and U-bo 1.0 1 1 110.8 4.6 57 686-742 104-160 (179)
3 3fl2_A E3 ubiquitin-protein li 1.0 1 1 110.1 5.6 61 682-742 46-107 (124)
4 4ayc_A E3 ubiquitin-protein li 1.0 1 1 109.5 12.9 50 686-736 51-100 (138)
5 2y1n_A E3 ubiquitin-protein li 1.0 1 1 105.9 4.3 55 686-740 330-384 (389)
6 1z6u_A NP95-like ring finger p 1.0 1 1 105.7 7.8 57 686-742 76-133 (150)
7 3lrq_A E3 ubiquitin-protein li 1.0 1 1 105.5 3.9 63 681-743 15-78 (100)
8 2ckl_B Ubiquitin ligase protei 1.0 1 1 104.5 1.5 52 685-736 51-103 (165)
9 1i84_S Smooth muscle myosin he 1.0 1 1 103.1 10.7 22 21-42 422-443 (1184)
10 1jm7_A BRCA1, breast cancer ty 1.0 1 1 102.3 6.0 67 676-742 9-77 (112)
No 1
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=1.00 E-value=1 Score=115.86 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=50.4
Q ss_pred CCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 26656121134677266267662237208887536988876788878889986767
Q 004587 687 EILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 742 (743)
Q Consensus 687 ~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~~~~~~~ 742 (743)
..+.||||++.|++||++||||+||..||..|+......||+||.++...++.+++
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~ 262 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNL 262 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECH
T ss_pred CCCCCCCCCCHHCCCEECCCCCEECHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCH
T ss_conf 66179273887138859999897779999999987879996978999521086169
No 2
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=1.00 E-value=1 Score=110.81 Aligned_cols=57 Identities=14% Similarity=0.107 Sum_probs=51.0
Q ss_pred HCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 226656121134677266267662237208887536988876788878889986767
Q 004587 686 REILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 742 (743)
Q Consensus 686 ~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~~~~~~~ 742 (743)
-..+.||||+..|++||++||||+||..||..|+......||+||.+|...++.+|+
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~ 160 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNL 160 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECH
T ss_pred CHHHCCCCCCCCCCCCEECCCCCEECHHHHHHHHHHCCCCCCCCCCCCCHHHCCCHH
T ss_conf 276164470341789848899897878999999996889897984999856281359
No 3
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=110.13 Aligned_cols=61 Identities=21% Similarity=0.490 Sum_probs=51.8
Q ss_pred HHHHHCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf 998422665612113467726626766223720888753698887678887888-9986767
Q 004587 682 LREYREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSP-NDVKPVY 742 (743)
Q Consensus 682 ~~~~~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~-~~~~~~~ 742 (743)
...+...+.|+||++.|.+|++++|||+||..|+..|+......||.||..|.. .++.+++
T Consensus 46 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~ 107 (124)
T 3fl2_A 46 LSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQ 107 (124)
T ss_dssp HHHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCH
T ss_pred HHHCCCCCCCCCCCHHHCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 98275389998689577694772287914499999999678098999986589988778789
No 4
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=1.00 E-value=1 Score=109.47 Aligned_cols=50 Identities=30% Similarity=0.668 Sum_probs=44.3
Q ss_pred HCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 226656121134677266267662237208887536988876788878889
Q 004587 686 REILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPN 736 (743)
Q Consensus 686 ~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~ 736 (743)
...+.|+||++.|.+||++||||+||..|+..|+.. ...||+||.++...
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK 100 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE
T ss_pred CCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHC-CCCCCCCCCCCCCC
T ss_conf 115997562723279667889998469999999976-99699999827889
No 5
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=1.00 E-value=1 Score=105.91 Aligned_cols=55 Identities=31% Similarity=0.649 Sum_probs=47.8
Q ss_pred HCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2266561211346772662676622372088875369888767888788899867
Q 004587 686 REILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKP 740 (743)
Q Consensus 686 ~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~~~~~ 740 (743)
.....|+||++.+.+|+++||||+||..|+..|+..+.+.||.||..+....+..
T Consensus 330 ~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~ 384 (389)
T 2y1n_A 330 STFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 384 (389)
T ss_dssp TSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEECS
T ss_pred CCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEE
T ss_conf 7899897157688883874799833179999999659998999988267760575
No 6
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=105.68 Aligned_cols=57 Identities=26% Similarity=0.610 Sum_probs=49.8
Q ss_pred HCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf 226656121134677266267662237208887536988876788878889-986767
Q 004587 686 REILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPN-DVKPVY 742 (743)
Q Consensus 686 ~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~-~~~~~~ 742 (743)
...+.|+||++.|.+|++++|||+||..|+..|+......||+||..+... ++.+++
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~ 133 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNE 133 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCH
T ss_pred CCCCEEECCCHHHCCCEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 4279900579042598882899903199999999839895999883578877788798
No 7
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=1.00 E-value=1 Score=105.49 Aligned_cols=63 Identities=21% Similarity=0.639 Sum_probs=53.6
Q ss_pred HHHHHHCCCCCCCCCCCCCCCEE-CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99984226656121134677266-2676622372088875369888767888788899867679
Q 004587 681 ELREYREILKCSICLERPKEVVI-TKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVYI 743 (743)
Q Consensus 681 e~~~~~~~~~C~iC~~~~~~~~~-~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~~~~~~~~ 743 (743)
....+...+.|+||++.|.+|++ ++|||+||..|+..|+......||.||.+|...++.++++
T Consensus 15 ~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~ 78 (100)
T 3lrq_A 15 SVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRW 78 (100)
T ss_dssp HHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 5345887889962892300866658999842299999999778498988888489999576388
No 8
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=1.00 E-value=1 Score=104.54 Aligned_cols=52 Identities=31% Similarity=0.779 Sum_probs=45.5
Q ss_pred HHCCCCCCCCCCCCCCCEEC-CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 42266561211346772662-67662237208887536988876788878889
Q 004587 685 YREILKCSICLERPKEVVIT-KCYHLFCNPCVQKVTESRHRKCPGCAASFSPN 736 (743)
Q Consensus 685 ~~~~~~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~ 736 (743)
+...+.|+||++.|.+|+++ +|||+||..|+..|+..+...||.||..+...
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 103 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred CCCCCCCCCCCHHHHCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 79999996269276393884899896289999999986829799999807885
No 9
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=103.08 Aligned_cols=22 Identities=5% Similarity=-0.161 Sum_probs=7.9
Q ss_pred HHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 2102650389999999999788
Q 004587 21 DRETGIPRTKNIVSNILAAVDN 42 (743)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~ 42 (743)
+...|-+-...+-..++.++-.
T Consensus 422 a~~~rdalak~lY~~lF~wlv~ 443 (1184)
T 1i84_S 422 ADFAIEALAKAKFERLFRWILT 443 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999
No 10
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=1.00 E-value=1 Score=102.25 Aligned_cols=67 Identities=36% Similarity=0.748 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHCCCC--CCCCCCCCCCCCCCCCCCC
Q ss_conf 999999998422665612113467726626766223720888753698--8876788878889986767
Q 004587 676 EELQQELREYREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRH--RKCPGCAASFSPNDVKPVY 742 (743)
Q Consensus 676 ~~l~~e~~~~~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~--~~CP~C~~~~~~~~~~~~~ 742 (743)
..+......+...+.|+||+..|.+|++++|||+||..|+..|+.... ..||.||..+...++.+++
T Consensus 9 ~~~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 77 (112)
T 1jm7_A 9 EEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQEST 77 (112)
T ss_dssp HHHHHHHHHHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCC
T ss_pred HHHHHHHHHCCCCCCCCCCCHHHCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCH
T ss_conf 999999995658999952591643957897898789999999998189989792989838876467537
Done!