BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004588
(743 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PXY|A Chain A, Crystal Structure Of The Actin-Crosslinking Core Of
Arabidopsis Fimbrin
pdb|1PXY|B Chain B, Crystal Structure Of The Actin-Crosslinking Core Of
Arabidopsis Fimbrin
Length = 506
Score = 866 bits (2237), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/502 (80%), Positives = 459/502 (91%), Gaps = 1/502 (0%)
Query: 122 ESEKASYVAHINSYLGDDPFLKQFLPLDPTTNDLFDLAKDGVLLCKLINIAVPGTIDERA 181
+SEK +V HIN YLGDDPFLKQFLPLDP +N L++L KDGVLLCKLIN+AVPGTIDERA
Sbjct: 6 QSEKGPFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERA 65
Query: 182 INTKRVINPWERNENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLILGLISQIIKIQLLA 241
INTKRV+NPWERNENHTLCLNSAKA+GC+VVNIGTQDL EGRPHL+LGLISQ+IKIQLLA
Sbjct: 66 INTKRVLNPWERNENHTLCLNSAKAVGCSVVNIGTQDLAEGRPHLVLGLISQLIKIQLLA 125
Query: 242 DLNLKKTPQLVELVEDNSDVEELMGLAPEKVLLKWMNYHLKKAGYEKPVTNFSSDLKDGK 301
DLNLKKTPQLVEL+ED+ DVEEL+ L PEKVLLKWMN+HLKK GY+K V+NFS+DLKD +
Sbjct: 126 DLNLKKTPQLVELLEDSDDVEELLRLPPEKVLLKWMNFHLKKGGYKKTVSNFSADLKDAQ 185
Query: 302 AYTYLLNVLAPEHCNPATLDMKDPTERAKLVLDHAERMDCKRYLSPKDIVEGSANLNLAF 361
AY +LLNVLAPEHC+PATLD KDP ERA+LVL HAERM+CKRYL+ ++IVEGS+ LNLAF
Sbjct: 186 AYAFLLNVLAPEHCDPATLDAKDPLERAELVLSHAERMNCKRYLTAEEIVEGSSTLNLAF 245
Query: 362 VAQVFHQRSGLTTDSKKISFAEMITDDVQTSREERCFRLWINSLGIATYCNNVFEDVRNG 421
VAQ+FH+R+GL D K +FAEM+T+DV+T R+ERC+RLWINSLGI +Y NNVFEDVRNG
Sbjct: 246 VAQIFHERNGLNKDG-KYAFAEMMTEDVETCRDERCYRLWINSLGIDSYVNNVFEDVRNG 304
Query: 422 WLLLEVLDKVSPGSVDWKQASKPPIKMPFRKVENCNQVIKIGKQLKFSLVNVAGNDFVQG 481
W+LLEVLDKVSP SV+WK ASKPPIKMPFRKVENCNQVIKIGKQLKFSLVNVAGND VQG
Sbjct: 305 WILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGKQLKFSLVNVAGNDIVQG 364
Query: 482 NKKLILAFLWQLMRFNMLQLLKNLRSRSQGKEITDAGILKWANDKVKSTGRTSQMESFKD 541
NKKLIL LWQLMRF+MLQLLK+LRSR+ GKE+TDA IL WAN KV++ GR Q+ESFKD
Sbjct: 365 NKKLILGLLWQLMRFHMLQLLKSLRSRTLGKEMTDADILSWANRKVRTMGRKLQIESFKD 424
Query: 542 KSLSNGLFFLELLSSVEPRVVNWNLVTKGESDEEKRLNATYIISVARKLGCSIFLLPEDI 601
KSLS+GLFFL LL +VEPRVVNWNLVTKGE+D+EKRLNATYI+SVARKLGCS+FLLPEDI
Sbjct: 425 KSLSSGLFFLNLLWAVEPRVVNWNLVTKGETDDEKRLNATYIVSVARKLGCSVFLLPEDI 484
Query: 602 MEVNQKMILTLTASIMYWSLQQ 623
+EVNQKMIL LTASIMYWSLQ+
Sbjct: 485 VEVNQKMILILTASIMYWSLQR 506
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 83/366 (22%), Positives = 156/366 (42%), Gaps = 44/366 (12%)
Query: 297 LKDGKAYTYLLNVLAPEHCNPATLDMK---DPTERAK---LVLDHAERMDCKRY-LSPKD 349
+KDG L+NV P + ++ K +P ER + L L+ A+ + C + +D
Sbjct: 43 VKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVGCSVVNIGTQD 102
Query: 350 IVEGSANLNLAFVAQVFHQRSGLTTDSKKI-SFAEMI--TDDVQTSRE---ERCFRLWIN 403
+ EG +L L ++Q+ + + KK E++ +DDV+ E+ W+N
Sbjct: 103 LAEGRPHLVLGLISQLIKIQLLADLNLKKTPQLVELLEDSDDVEELLRLPPEKVLLKWMN 162
Query: 404 ----SLGIATYCNNVFEDVRNGW---LLLEVL--DKVSPGSVDWKQ-ASKPPIKMPFRKV 453
G +N D+++ LL VL + P ++D K + + + +
Sbjct: 163 FHLKKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEHCDPATLDAKDPLERAELVLSHAER 222
Query: 454 ENCNQVIKIGKQLKFSLVNVAGNDFVQGNKKLILAFLWQLM--RFNMLQLLKNLRSRSQG 511
NC + + + V+G+ L LAF+ Q+ R + + K +
Sbjct: 223 MNCKRYL-------------TAEEIVEGSSTLNLAFVAQIFHERNGLNKDGKYAFAEMMT 269
Query: 512 KEITDAGILKWANDKVKSTGRTSQMES-FKDKSLSNGLFFLELLSSVEPRVVNWNLVTKG 570
+++ + + S G S + + F+D + NG LE+L V P VNW +K
Sbjct: 270 EDVETCRDERCYRLWINSLGIDSYVNNVFED--VRNGWILLEVLDKVSPSSVNWKHASKP 327
Query: 571 --ESDEEKRLNATYIISVARKLGCSIF-LLPEDIMEVNQKMILTLTASIMYWSLQQQVEE 627
+ K N +I + ++L S+ + DI++ N+K+IL L +M + + Q ++
Sbjct: 328 PIKMPFRKVENCNQVIKIGKQLKFSLVNVAGNDIVQGNKKLILGLLWQLMRFHMLQLLKS 387
Query: 628 AESSPL 633
S L
Sbjct: 388 LRSRTL 393
>pdb|1RT8|A Chain A, Crystal Structure Of The Actin-Crosslinking Core Of
Schizosaccharomyces Pombe Fimbrin
Length = 513
Score = 428 bits (1101), Expect = e-120, Method: Compositional matrix adjust.
Identities = 217/510 (42%), Positives = 330/510 (64%), Gaps = 11/510 (2%)
Query: 116 LLHTISESEKASYVAHINSYLGDDPFLKQFLPLDPTTNDLFDLAKDGVLLCKLINIAVPG 175
+HTI+E E+ ++ HINS L DP + +P++ T + FD KDG++L KLIN +VP
Sbjct: 5 FMHTINEEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPD 64
Query: 176 TIDERAINTKRVINPWERN---ENHTLCLNSAKAIG-CTVVNIGTQDLVEGRPHLILGLI 231
TIDER +N +R P + EN+ + +NSAKA+G ++ NIG D++EGR HLILGL+
Sbjct: 65 TIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMGGISITNIGAGDILEGREHLILGLV 124
Query: 232 SQIIKIQLLADLNLKKTPQLVELVEDNSDVEELMGLAPEKVLLKWMNYHLKKAGYEKPVT 291
QII+ LL +++ P+L L+E++ +++ + L PEK+LL+W NYHLK A + + V+
Sbjct: 125 WQIIRRGLLGKIDITLHPELYRLLEEDETLDQFLRLPPEKILLRWFNYHLKAANWPRTVS 184
Query: 292 NFSSDLKDGKAYTYLLNVLAPEHCNPATLDMKDPTERAKLVLDHAERMDCKRYLSPKDIV 351
NFS D+ DG+ YT LLN LAPE C+ A L D +RA+ VL +AE++DC++YL+P +V
Sbjct: 185 NFSKDVSDGENYTVLLNQLAPELCSRAPLQTTDVLQRAEQVLQNAEKLDCRKYLTPTAMV 244
Query: 352 EGSANLNLAFVAQVFHQRSGLTTDSKKISFAEMITDDVQTSREERCFRLWINSLGIATYC 411
G+ LNLAFVA +F+ GL +++ E+ D + RE R F LW+NSL +
Sbjct: 245 AGNPKLNLAFVAHLFNTHPGLEPLNEE-EKPEIEPFDAEGEREARVFTLWLNSLDVTPSI 303
Query: 412 NNVFEDVRNGWLLLEVLDKVSPGSVDWKQASKPPIK----MPFRKVENCNQVIKIGKQLK 467
++ F ++R+G +LL+ DK++P +V+WK+ +K P M F+ VENCN + +GK
Sbjct: 304 HDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKNQG 363
Query: 468 FSLVNVAGNDFVQGNKKLILAFLWQLMRFNMLQLLKNLRSRSQGKEITDAGILKWANDKV 527
FSLV + G D G++ L LA +WQ+MR N+ + L +L SR GK ++D+ ++ WAN
Sbjct: 364 FSLVGIQGADITDGSRTLTLALVWQMMRMNITKTLHSL-SRG-GKTLSDSDMVAWANSMA 421
Query: 528 KSTGRTSQMESFKDKSLSNGLFFLELLSSVEPRVVNWNLVTKGESDEEKRLNATYIISVA 587
G+ SQ+ SF+D S+S G+F L++L ++ V++NLVT G ++E NA IS+A
Sbjct: 422 AKGGKGSQIRSFRDPSISTGVFVLDVLHGIKSEYVDYNLVTDGSTEELAIQNARLAISIA 481
Query: 588 RKLGCSIFLLPEDIMEVNQKMILTLTASIM 617
RKLG IF+LPEDI+ V +++L S+M
Sbjct: 482 RKLGAVIFILPEDIVAVRPRLVLHFIGSLM 511
>pdb|3BYH|B Chain B, Model Of Actin-Fimbrin Abd2 Complex
Length = 231
Score = 405 bits (1040), Expect = e-113, Method: Compositional matrix adjust.
Identities = 194/236 (82%), Positives = 214/236 (90%), Gaps = 5/236 (2%)
Query: 388 DVQTSREERCFRLWINSLGIATYCNNVFEDVRNGWLLLEVLDKVSPGSVDWKQASKPPIK 447
DV+T R+ERC+RLWINSLGI +Y NNVFEDVRNGW+LLEVLDKVSP SV+WK ASKPPIK
Sbjct: 1 DVETCRDERCYRLWINSLGIDSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIK 60
Query: 448 MPFRKVENCNQVIKIGKQLKFSLVNVAGNDFVQGNKKLILAFLWQLMRFNMLQLLKNLRS 507
MPFRKVENCNQVIKIGKQLKFSLVNVAGND VQGNKKLIL LWQLMRF+MLQLLK+LRS
Sbjct: 61 MPFRKVENCNQVIKIGKQLKFSLVNVAGNDIVQGNKKLILGLLWQLMRFHMLQLLKSLRS 120
Query: 508 RSQGKEITDAGILKWANDKVKSTGRTSQMESFKDKSLSNGLFFLELLSSVEPRVVNWNLV 567
E+TDA IL WAN KV++ GR Q+ESFKDKSLS+GLFFL LL +VEPRVVNWNLV
Sbjct: 121 -----EMTDADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNLV 175
Query: 568 TKGESDEEKRLNATYIISVARKLGCSIFLLPEDIMEVNQKMILTLTASIMYWSLQQ 623
TKGE+D+EKRLNATYI+SVARKLGCS+FLLPEDI+EVNQKMIL LTASIMYWSLQ+
Sbjct: 176 TKGETDDEKRLNATYIVSVARKLGCSVFLLPEDIVEVNQKMILILTASIMYWSLQR 231
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 105/227 (46%), Gaps = 23/227 (10%)
Query: 146 LPLDPTTNDLFDLAKDGVLLCKLINIAVPGTIDERAINTKRVINPWERNENHTLCLNSAK 205
L +D N++F+ ++G +L ++++ P +++ + + + P+ + EN + K
Sbjct: 18 LGIDSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGK 77
Query: 206 AIGCTVVNIGTQDLVEGRPHLILGLISQIIKIQLLADLNLKKTPQLVELVEDNSDVEELM 265
+ ++VN+ D+V+G LILGL+ Q+++ +L L L + +D +
Sbjct: 78 QLKFSLVNVAGNDIVQGNKKLILGLLWQLMRFHMLQLLK--------SLRSEMTDAD--- 126
Query: 266 GLAPEKVLLKWMNYHLKKAGYEKPVTNFS-SDLKDGKAYTYLLNVLAPE--HCNPATLDM 322
+L W N ++ G + + +F L G + LL + P + N T
Sbjct: 127 -------ILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNLVTKGE 179
Query: 323 KDPTER--AKLVLDHAERMDCKRYLSPKDIVEGSANLNLAFVAQVFH 367
D +R A ++ A ++ C +L P+DIVE + + L A + +
Sbjct: 180 TDDEKRLNATYIVSVARKLGCSVFLLPEDIVEVNQKMILILTASIMY 226
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 539 FKDKSLSNGLFFLELLSSVEPRVVNWNLVTKG--ESDEEKRLNATYIISVARKLGCSIF- 595
F+D + NG LE+L V P VNW +K + K N +I + ++L S+
Sbjct: 28 FED--VRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGKQLKFSLVN 85
Query: 596 LLPEDIMEVNQKMILTLTASIMYWSLQQQVEEAES 630
+ DI++ N+K+IL L +M + + Q ++ S
Sbjct: 86 VAGNDIVQGNKKLILGLLWQLMRFHMLQLLKSLRS 120
>pdb|1AOA|A Chain A, N-Terminal Actin-Crosslinking Domain From Human Fimbrin
Length = 275
Score = 246 bits (628), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 121/259 (46%), Positives = 178/259 (68%), Gaps = 11/259 (4%)
Query: 118 HTISESEKASYVAHINSYLGDDPFLKQFLPLDPTTNDLFDLAKDGVLLCKLINIAVPGTI 177
H+ SE EK ++V IN L +DP + +P++P T+DLF DG++LCK+IN++VP TI
Sbjct: 19 HSYSEEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTI 78
Query: 178 DERAINTKRVINPWERNENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLILGLISQIIKI 237
DERAIN K+ + P+ EN L LNSA AIGC VVNIG +DL G+PHL+LGL+ QIIKI
Sbjct: 79 DERAINKKK-LTPFIIQENLNLALNSASAIGCHVVNIGAEDLRAGKPHLVLGLLWQIIKI 137
Query: 238 QLLADLNLKKTPQLVELVEDNSDVEELMGLAPEKVLLKWMNYHLKKAGYEKPVTNFSSDL 297
L AD+ L + L L+ D +EELM L+PE++LL+W N+HL+ +G++K + NFS+D+
Sbjct: 138 GLFADIELSRNEALAALLRDGETLEELMKLSPEELLLRWANFHLENSGWQK-INNFSADI 196
Query: 298 KDGKAYTYLLNVLAPE---------HCNPATLDMKDPTERAKLVLDHAERMDCKRYLSPK 348
KD KAY +LLN +AP+ N + + D +RA+ +L A+++ C+++++P
Sbjct: 197 KDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQADKLGCRQFVTPA 256
Query: 349 DIVEGSANLNLAFVAQVFH 367
D+V G+ LNLAFVA +F+
Sbjct: 257 DVVSGNPKLNLAFVANLFN 275
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 107/226 (47%), Gaps = 25/226 (11%)
Query: 412 NNVFEDVRNGWLLLEVLDKVSPGSVDWKQASKPPIKMPFRKVENCNQVIKIGKQLKFSLV 471
+++F+ V +G +L ++++ P ++D + +K + PF EN N + + +V
Sbjct: 54 DDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKL-TPFIIQENLNLALNSASAIGCHVV 112
Query: 472 NVAGNDFVQGNKKLILAFLWQLMRFNMLQLLKNLRSRSQGKEITDAG------------- 518
N+ D G L+L LWQ+++ + ++ R+ + + D
Sbjct: 113 NIGAEDLRAGKPHLVLGLLWQIIKIGLFADIELSRNEALAALLRDGETLEELMKLSPEEL 172
Query: 519 ILKWANDKVKSTGRTSQMESFKDKSLSNGLFFLELLSSVEPR-------VVNWNLVTKGE 571
+L+WAN ++++G ++ +F + + + LL+ + P+ ++ N+ E
Sbjct: 173 LLRWANFHLENSG-WQKINNFS-ADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNE 230
Query: 572 SDEEKRLNATYIISVARKLGCSIFLLPEDIMEVNQKMILTLTASIM 617
+D+ KR A ++ A KLGC F+ P D++ N K+ L A++
Sbjct: 231 TDDLKR--AESMLQQADKLGCRQFVTPADVVSGNPKLNLAFVANLF 274
>pdb|1WJO|A Chain A, Solution Structure Of The Forth Ch Domain From Human
Plastin 3 T-Isoform
Length = 124
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 77/116 (66%), Gaps = 1/116 (0%)
Query: 509 SQGKEITDAGILKWANDKVKSTGRTSQMESFKDKSLSNGLFFLELLSSVEPRVVNWNLVT 568
S G D I+ W N + G+++ ++SFKDK++S+ L ++L+ +++P +N++LV
Sbjct: 2 SSGSSGNDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVK 61
Query: 569 KGE-SDEEKRLNATYIISVARKLGCSIFLLPEDIMEVNQKMILTLTASIMYWSLQQ 623
G ++++K NA Y +S+AR++G ++ LPED++EV KM++T+ A +M +++
Sbjct: 62 SGNLTEDDKHNNAKYAVSMARRIGARVYALPEDLVEVKPKMVMTVFACLMGRGMKR 117
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 270 EKVLLKWMNYHLKKAGYEKPVTNFSSD-LKDGKAYTYLLNVLAPEHCN-----PATLDMK 323
+ +++ W+N L +AG + +F + A L++ + P N L
Sbjct: 9 DDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTED 68
Query: 324 DPTERAKLVLDHAERMDCKRYLSPKDIVE 352
D AK + A R+ + Y P+D+VE
Sbjct: 69 DKHNNAKYAVSMARRIGARVYALPEDLVE 97
>pdb|2D85|A Chain A, Solution Structure Of The Fourth Ch Domain From Human L-
Plastin
Length = 124
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 76/116 (65%), Gaps = 1/116 (0%)
Query: 509 SQGKEITDAGILKWANDKVKSTGRTSQMESFKDKSLSNGLFFLELLSSVEPRVVNWNLV- 567
S G D I+ W N+ ++ ++S + SFKD +S L L+L+ +++P +N++L+
Sbjct: 2 SSGSSGNDDIIVNWVNETLREAEKSSSISSFKDPKISTSLPVLDLIDAIQPGSINYDLLK 61
Query: 568 TKGESDEEKRLNATYIISVARKLGCSIFLLPEDIMEVNQKMILTLTASIMYWSLQQ 623
T+ +D+EK NA Y IS+ARK+G ++ LPED++EVN KM++T+ A +M +++
Sbjct: 62 TENLNDDEKLNNAKYAISMARKIGARVYALPEDLVEVNPKMVMTVFACLMGKGMKR 117
>pdb|3F7P|A Chain A, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|B Chain B, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 296
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 115/230 (50%), Gaps = 22/230 (9%)
Query: 394 EERCFRLWINSLGIAT--YCNNVFEDVRNGWLLLEVLDKVSPGSVDWKQASKPPIKMPFR 451
+++ F W+N I + ++++ED+R+G L+ +L+ +S S+ ++ +M F
Sbjct: 74 QKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREKG-----RMRFH 128
Query: 452 KVENCNQVIKIGKQLKFSLVNVAGNDFVQGNKKLILAFLWQ-LMRFNMLQLLKNLRSRSQ 510
K++N + + + LVN+ +D GN KL L +W ++ F + +++ Q
Sbjct: 129 KLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQ----ISDIQVSGQ 184
Query: 511 GKEIT-DAGILKWANDKVKSTGRTSQMESFKDKSLSNGLFFLELLSSVEPRVVNWNLVTK 569
+++T +L W+ V+ + + ++F S +G F ++ +P +++ N V +
Sbjct: 185 SEDMTAKEKLLLWSQRMVEGY-QGLRCDNFT-SSWRDGRLFNAIIHRHKPLLIDMNKVYR 242
Query: 570 GESDEEKRLNATYIISVA-RKLGCSIFLLPE--DIMEVNQKMILTLTASI 616
+ E N SVA R LG + L PE D+ + ++K I+T +S+
Sbjct: 243 QTNLE----NLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSL 288
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 92/215 (42%), Gaps = 34/215 (15%)
Query: 143 KQFLPLDPTTNDLFDLAKDGVLLCKLINIAVPGTIDERAINTKRVINPWERNENHTLCLN 202
K + +DL++ +DG L L+ + ++ + + + +N + L+
Sbjct: 84 KHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREKGRMR-----FHKLQNVQIALD 138
Query: 203 SAKAIGCTVVNIGTQDLVEGRPHLILGLISQIIKIQLLADLNLKKTPQLVELVEDNSDVE 262
+ +VNI D+ +G P L LGLI II ++D+ Q+ ED +
Sbjct: 139 YLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDI------QVSGQSEDMT--- 189
Query: 263 ELMGLAPEKVLLKWMNYHLKKAGYEK-PVTNFSSDLKDGKAYTYLLNVLAPEHCNPATLD 321
A EK+LL W ++ GY+ NF+S +DG+ L N + H P +D
Sbjct: 190 -----AKEKLLL-WSQRMVE--GYQGLRCDNFTSSWRDGR----LFNAIIHRH-KPLLID 236
Query: 322 MKDPTERAKLV-LDH----AER-MDCKRYLSPKDI 350
M + L LD AER + R L P+D+
Sbjct: 237 MNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDV 271
>pdb|1QAG|A Chain A, Actin Binding Region Of The Dystrophin Homologue Utrophin
pdb|1QAG|B Chain B, Actin Binding Region Of The Dystrophin Homologue Utrophin
Length = 226
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 102/214 (47%), Gaps = 19/214 (8%)
Query: 394 EERCFRLWINSLGIATY---CNNVFEDVRNGWLLLEVLDKVSPGSVDWKQASKPPIKMPF 450
+++ F WIN+ + N+ F D+++G LL++L+ ++ S+ ++ S
Sbjct: 3 QKKTFTKWINARFSKSGKPPINDXFTDLKDGRKLLDLLEGLTGTSLPKERGS-----TRV 57
Query: 451 RKVENCNQVIKIGKQLKFSLVNVAGNDFVQGNKKLILAFLWQ-LMRFNMLQLLKNLRSRS 509
+ N N+V+++ Q LVN+ G D V GN KL L LW ++ + + + K++ S
Sbjct: 58 HALNNVNRVLQVLHQNNVELVNIGGTDIVDGNHKLTLGLLWSIILHWQVKDVXKDVXSDL 117
Query: 510 QGKEITDAGILKWANDKVKSTGR-TSQMESFK-DKSLSNGLFFLELLSSVEPRVVNWNLV 567
Q ++ +L W V+ T R SQ+ S ++GL F +L +P + +W+ V
Sbjct: 118 QQTN-SEKILLSW----VRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKV 172
Query: 568 TKGESDEEKRLNATYIISVARKLGCSIFLLPEDI 601
K E RL + LG L PED+
Sbjct: 173 VKXSPIE--RLEHAF-SKAQTYLGIEKLLDPEDV 203
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 83/210 (39%), Gaps = 36/210 (17%)
Query: 150 PTTNDLFDLAKDGVLLCKLINIAVPGTIDERAINTKRVINPWERNENHTLCLNSAKAI-- 207
P ND F KDG L L+ + GT P ER LN+ +
Sbjct: 21 PPINDXFTDLKDGRKLLDLLE-GLTGTS-----------LPKERGSTRVHALNNVNRVLQ 68
Query: 208 -----GCTVVNIGTQDLVEGRPHLILGLISQIIKIQLLADLNLKKTPQLVELVEDNSDV- 261
+VNIG D+V+G L LGL+ II + D+ DV
Sbjct: 69 VLHQNNVELVNIGGTDIVDGNHKLTLGLLWSIILHWQVKDV--------------XKDVX 114
Query: 262 EELMGLAPEKVLLKWMNYHLKKAGYEKPVTNFSSDLKDGKAYTYLLNVLAPEHCNPATLD 321
+L EK+LL W+ + + V NF++ DG A+ +L+ P+ + +
Sbjct: 115 SDLQQTNSEKILLSWVR-QTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVV 173
Query: 322 MKDPTERAKLVLDHAE-RMDCKRYLSPKDI 350
P ER + A+ + ++ L P+D+
Sbjct: 174 KXSPIERLEHAFSKAQTYLGIEKLLDPEDV 203
>pdb|1DXX|A Chain A, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|B Chain B, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|C Chain C, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|D Chain D, N-Terminal Actin-Binding Domain Of Human Dystrophin
Length = 246
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 103/215 (47%), Gaps = 20/215 (9%)
Query: 394 EERCFRLWINS----LGIATYCNNVFEDVRNGWLLLEVLDKVSPGSVDWKQASKPPIKMP 449
+++ F W+N+ G + N+F D+++G LL++L+ ++ ++ K
Sbjct: 17 QKKTFTKWVNAQFSKFG-KQHIENLFSDLQDGRRLLDLLEGLTG-----QKLPKEKGSTR 70
Query: 450 FRKVENCNQVIKIGKQLKFSLVNVAGNDFVQGNKKLILAFLWQ-LMRFNMLQLLKNLRSR 508
+ N N+ +++ + LVN+ D V GN KL L +W ++ + + ++KN+ +
Sbjct: 71 VHALNNVNKALRVLQNNNVDLVNIGSTDIVDGNHKLTLGLIWNIILHWQVKNVMKNIMAG 130
Query: 509 SQGKEITDAGILKWANDKVKSTGRTSQMESFK-DKSLSNGLFFLELLSSVEPRVVNWNLV 567
Q ++ +L W +ST Q+ S S+GL L+ S P + +WN V
Sbjct: 131 LQQTN-SEKILLSWVR---QSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWNSV 186
Query: 568 TKGESDEEKRLNATYIISVAR-KLGCSIFLLPEDI 601
+S ++ +A ++AR +LG L PED+
Sbjct: 187 VSQQSATQRLEHA---FNIARYQLGIEKLLDPEDV 218
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 71/145 (48%), Gaps = 22/145 (15%)
Query: 211 VVNIGTQDLVEGRPHLILGLISQIIKIQLLADLNLKKTPQLVELVEDNSDVEELMGLAPE 270
+VNIG+ D+V+G L LGLI II + ++ +K + L + NS E
Sbjct: 91 LVNIGSTDIVDGNHKLTLGLIWNIILHWQVKNV-MKNI--MAGLQQTNS----------E 137
Query: 271 KVLLKWMNYHLKKAGYEKP---VTNFSSDLKDGKAYTYLLNVLAPEHCN-PATLDMKDPT 326
K+LL W+ +++ P V NF++ DG A L++ P+ + + + + T
Sbjct: 138 KILLSWV----RQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWNSVVSQQSAT 193
Query: 327 ERAKLVLDHAE-RMDCKRYLSPKDI 350
+R + + A ++ ++ L P+D+
Sbjct: 194 QRLEHAFNIARYQLGIEKLLDPEDV 218
>pdb|1SH5|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
pdb|1SH5|B Chain B, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
pdb|1SH6|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
Length = 245
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 114/235 (48%), Gaps = 27/235 (11%)
Query: 394 EERCFRLWINSLGIATY-------CNNVFEDVRNGWLLLEVLDKVSPGSVDWKQASKPPI 446
+++ F W+N I + ++++ED+R+G L+ +L+ +S S+ +
Sbjct: 13 QKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSL-----PREKG 67
Query: 447 KMPFRKVENCNQVIKIGKQLKFSLVNVAGNDFVQGNKKLILAFLWQ-LMRFNMLQLLKNL 505
+M F K++N + + + LVN+ +D GN KL L +W ++ F + ++
Sbjct: 68 RMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQ----ISDI 123
Query: 506 RSRSQGKEIT-DAGILKWANDKVKSTGRTSQMESFKDKSLSNGLFFLELLSSVEPRVVNW 564
+ Q +++T +L W+ V+ + + ++F S +G F ++ +P +++
Sbjct: 124 QVSGQSEDMTAKEKLLLWSQRMVEGY-QGLRCDNFT-TSWRDGRLFNAIIHRHKPMLIDM 181
Query: 565 NLVTKGESDEEKRLNATYIISVA-RKLGCSIFLLPEDIM--EVNQKMILTLTASI 616
N V + + E N SVA R LG + L PED+ + ++K I+T +S+
Sbjct: 182 NKVYRQTNLE----NLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSL 232
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 90/205 (43%), Gaps = 34/205 (16%)
Query: 153 NDLFDLAKDGVLLCKLINIAVPGTIDERAINTKRVINPWERNENHTLCLNSAKAIGCTVV 212
+DL++ +DG L L+ + ++ + + + +N + L+ + +V
Sbjct: 38 SDLYEDLRDGHNLISLLEVLSGDSLPREKGRMR-----FHKLQNVQIALDYLRHRQVKLV 92
Query: 213 NIGTQDLVEGRPHLILGLISQIIKIQLLADLNLKKTPQLVELVEDNSDVEELMGLAPEKV 272
NI D+ +G P L LGLI II ++D+ Q+ ED + A EK+
Sbjct: 93 NIRNDDIADGNPKLTLGLIWTIILHFQISDI------QVSGQSEDMT--------AKEKL 138
Query: 273 LLKWMNYHLKKAGYEK-PVTNFSSDLKDGKAYTYLLNVLAPEHCNPATLDMKDPTERAKL 331
LL W ++ GY+ NF++ +DG+ L N + H P +DM + L
Sbjct: 139 LL-WSQRMVE--GYQGLRCDNFTTSWRDGR----LFNAIIHRH-KPMLIDMNKVYRQTNL 190
Query: 332 V-LDH----AER-MDCKRYLSPKDI 350
LD AER + R L P+D+
Sbjct: 191 ENLDQAFSVAERDLGVTRLLDPEDV 215
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 42/212 (19%), Positives = 81/212 (38%), Gaps = 39/212 (18%)
Query: 270 EKVLLKWMNYHLKK---AGYEKPVTNFSSDLKDGKAYTYLLNVLAPEHCNPATLDMK-DP 325
+K KW+N HL K A ++ +++ DL+DG LL VL+ + M+
Sbjct: 14 KKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREKGRMRFHK 73
Query: 326 TERAKLVLDHAERMDCKRY-LSPKDIVEGSANLNLAFV-----------AQVFHQRSGLT 373
+ ++ LD+ K + DI +G+ L L + QV Q +T
Sbjct: 74 LQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSEDMT 133
Query: 374 TDSKKISFAEMITDDVQTSREERCFRLWINSLGIATYCNNVFEDVRNGWLLLEVLDKVSP 433
K + +++ + + Q R C+N R+G L ++ + P
Sbjct: 134 AKEKLLLWSQRMVEGYQGLR-----------------CDNFTTSWRDGRLFNAIIHRHKP 176
Query: 434 GSVDWKQASKPPIKMPFRKVENCNQVIKIGKQ 465
+D + + +EN +Q + ++
Sbjct: 177 MLIDMNKVYRQT------NLENLDQAFSVAER 202
>pdb|1MB8|A Chain A, Crystal Structure Of The Actin Binding Domain Of Plectin
Length = 243
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 115/235 (48%), Gaps = 27/235 (11%)
Query: 394 EERCFRLWINSLGI-------ATYCNNVFEDVRNGWLLLEVLDKVSPGSVDWKQASKPPI 446
+++ F W+N I + ++++ED+R+G L+ +L+ +S S+ ++
Sbjct: 16 QKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREKG----- 70
Query: 447 KMPFRKVENCNQVIKIGKQLKFSLVNVAGNDFVQGNKKLILAFLWQ-LMRFNMLQLLKNL 505
+M F K++N + + + LVN+ +D GN KL L +W ++ F + ++
Sbjct: 71 RMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQ----ISDI 126
Query: 506 RSRSQGKEIT-DAGILKWANDKVKSTGRTSQMESFKDKSLSNGLFFLELLSSVEPRVVNW 564
+ Q +++T +L W+ V+ + + ++F S +G F ++ +P +++
Sbjct: 127 QVSGQSEDMTAKEKLLLWSQRMVEGY-QGLRCDNFT-SSWRDGRLFNAIIHRHKPLLIDM 184
Query: 565 NLVTKGESDEEKRLNATYIISVA-RKLGCSIFLLPEDIM--EVNQKMILTLTASI 616
N V + + E N SVA R LG + L PED+ + ++K I+T +S+
Sbjct: 185 NKVYRQTNLE----NLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSL 235
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 90/205 (43%), Gaps = 34/205 (16%)
Query: 153 NDLFDLAKDGVLLCKLINIAVPGTIDERAINTKRVINPWERNENHTLCLNSAKAIGCTVV 212
+DL++ +DG L L+ + ++ + + + +N + L+ + +V
Sbjct: 41 SDLYEDLRDGHNLISLLEVLSGDSLPREKGRMR-----FHKLQNVQIALDYLRHRQVKLV 95
Query: 213 NIGTQDLVEGRPHLILGLISQIIKIQLLADLNLKKTPQLVELVEDNSDVEELMGLAPEKV 272
NI D+ +G P L LGLI II ++D+ Q+ ED + A EK+
Sbjct: 96 NIRNDDIADGNPKLTLGLIWTIILHFQISDI------QVSGQSEDMT--------AKEKL 141
Query: 273 LLKWMNYHLKKAGYEK-PVTNFSSDLKDGKAYTYLLNVLAPEHCNPATLDMKDPTERAKL 331
LL W ++ GY+ NF+S +DG+ L N + H P +DM + L
Sbjct: 142 LL-WSQRMVE--GYQGLRCDNFTSSWRDGR----LFNAIIHRH-KPLLIDMNKVYRQTNL 193
Query: 332 V-LDH----AER-MDCKRYLSPKDI 350
LD AER + R L P+D+
Sbjct: 194 ENLDQAFSVAERDLGVTRLLDPEDV 218
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 42/212 (19%), Positives = 81/212 (38%), Gaps = 39/212 (18%)
Query: 270 EKVLLKWMNYHLKK---AGYEKPVTNFSSDLKDGKAYTYLLNVLAPEHCNPATLDMK-DP 325
+K KW+N HL K A ++ +++ DL+DG LL VL+ + M+
Sbjct: 17 KKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREKGRMRFHK 76
Query: 326 TERAKLVLDHAERMDCKRY-LSPKDIVEGSANLNLAFV-----------AQVFHQRSGLT 373
+ ++ LD+ K + DI +G+ L L + QV Q +T
Sbjct: 77 LQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSEDMT 136
Query: 374 TDSKKISFAEMITDDVQTSREERCFRLWINSLGIATYCNNVFEDVRNGWLLLEVLDKVSP 433
K + +++ + + Q R C+N R+G L ++ + P
Sbjct: 137 AKEKLLLWSQRMVEGYQGLR-----------------CDNFTSSWRDGRLFNAIIHRHKP 179
Query: 434 GSVDWKQASKPPIKMPFRKVENCNQVIKIGKQ 465
+D + + +EN +Q + ++
Sbjct: 180 LLIDMNKVYRQT------NLENLDQAFSVAER 205
>pdb|1WKU|A Chain A, High Resolution Structure Of The Human Alpha-Actinin
Isoform 3
pdb|1WKU|B Chain B, High Resolution Structure Of The Human Alpha-Actinin
Isoform 3
Length = 254
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 112/256 (43%), Gaps = 26/256 (10%)
Query: 383 EMITDDVQTSREERCFRLWINS--LGIATYCNNVFEDVRNGWLLLEVLDKVSPGSVDWKQ 440
+++ D ++ + F W NS T N+ ED RNG L+ +L+ +S ++
Sbjct: 17 DLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISG-----ER 71
Query: 441 ASKPPI-KMPFRKVENCNQVIKIGKQLKFSLVNVAGNDFVQGNKKLILAFLWQ-LMRFNM 498
+P KM F K+ N N+ + LV++ + V GN K+ L +W ++RF +
Sbjct: 72 LPRPDKGKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAI 131
Query: 499 LQLLKNLRSRSQGKEITDAGILKWANDKVKSTGRTSQMESFKDKSLSNGLFFLELLSSVE 558
+ S + G+L W K + R +++F S +GL L+
Sbjct: 132 QDI-------SVEETSAKEGLLLWCQRKT-APYRNVNVQNFH-TSWKDGLALCALIHRHR 182
Query: 559 PRVVNWNLVTKGESDEEKRLNATYIISVARKLGCSIFLLPEDIMEV---NQKMILTLTAS 615
P ++++ + K D LN + ++ + L L EDI+ ++K I+T +
Sbjct: 183 PDLIDYAKLRK--DDPIGNLNTAFEVA-EKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSC 239
Query: 616 IMYWSLQQQVEEAESS 631
++ E+AE++
Sbjct: 240 --FYHAFAGAEQAETA 253
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 26/169 (15%)
Query: 208 GCTVVNIGTQDLVEGRPHLILGLISQIIKIQLLADLNLKKTPQLVELVEDNSDVEELMGL 267
G +V+IG +++V+G + LG+I II + D+++++T
Sbjct: 99 GVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEETS------------------ 140
Query: 268 APEKVLLKWMNYHLKKAGYEKP-VTNFSSDLKDGKAYTYLLNVLAPEHCNPATLDMKDPT 326
A E +LL W K A Y V NF + KDG A L++ P+ + A L DP
Sbjct: 141 AKEGLLL-WCQR--KTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYAKLRKDDPI 197
Query: 327 ERAKLVLDHAER-MDCKRYLSPKDIV---EGSANLNLAFVAQVFHQRSG 371
+ AE+ +D + L +DIV + + +V+ +H +G
Sbjct: 198 GNLNTAFEVAEKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCFYHAFAG 246
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 271 KVLLKWMNYHLKKAGYEKPVTNFSSDLKDGKAYTYLLNVLAPE 313
K W N HL+KAG + + N D ++G LL V++ E
Sbjct: 30 KTFTAWCNSHLRKAGTQ--IENIEEDFRNGLKLMLLLEVISGE 70
>pdb|1TJT|A Chain A, X-Ray Structure Of The Human Alpha-Actinin Isoform 3 At
2.2a Resolution
Length = 250
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 113/256 (44%), Gaps = 26/256 (10%)
Query: 383 EMITDDVQTSREERCFRLWINS--LGIATYCNNVFEDVRNGWLLLEVLDKVSPGSVDWKQ 440
+++ D ++ + F W NS T N+ ED RNG L+ +L+ +S ++
Sbjct: 13 DLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISG-----ER 67
Query: 441 ASKPPI-KMPFRKVENCNQVIKIGKQLKFSLVNVAGNDFVQGNKKLILAFLWQ-LMRFNM 498
+P KM F K+ N N+ + LV++ + V GN K+ L +W ++RF +
Sbjct: 68 LPRPDKGKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAI 127
Query: 499 LQLLKNLRSRSQGKEITDAGILKWANDKVKSTGRTSQMESFKDKSLSNGLFFLELLSSVE 558
+ + KE G+L W K + R +++F S +GL L+
Sbjct: 128 QDISV---EETSAKE----GLLLWCQRKT-APYRNVNVQNFH-TSWKDGLALCALIHRHR 178
Query: 559 PRVVNWNLVTKGESDEEKRLNATYIISVARKLGCSIFLLPEDIMEV---NQKMILTLTAS 615
P ++++ + K D LN + ++ + L L EDI+ ++K I+T +
Sbjct: 179 PDLIDYAKLRK--DDPIGNLNTAFEVA-EKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSC 235
Query: 616 IMYWSLQQQVEEAESS 631
++ E+AE++
Sbjct: 236 --FYHAFAGAEQAETA 249
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 26/169 (15%)
Query: 208 GCTVVNIGTQDLVEGRPHLILGLISQIIKIQLLADLNLKKTPQLVELVEDNSDVEELMGL 267
G +V+IG +++V+G + LG+I II + D+++++T
Sbjct: 95 GVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEETS------------------ 136
Query: 268 APEKVLLKWMNYHLKKAGYEK-PVTNFSSDLKDGKAYTYLLNVLAPEHCNPATLDMKDPT 326
A E +LL W K A Y V NF + KDG A L++ P+ + A L DP
Sbjct: 137 AKEGLLL-WCQR--KTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYAKLRKDDPI 193
Query: 327 ERAKLVLDHAER-MDCKRYLSPKDIV---EGSANLNLAFVAQVFHQRSG 371
+ AE+ +D + L +DIV + + +V+ +H +G
Sbjct: 194 GNLNTAFEVAEKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCFYHAFAG 242
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 271 KVLLKWMNYHLKKAGYEKPVTNFSSDLKDGKAYTYLLNVLAPE 313
K W N HL+KAG + + N D ++G LL V++ E
Sbjct: 26 KTFTAWCNSHLRKAGTQ--IENIEEDFRNGLKLMLLLEVISGE 66
>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
pdb|1SJJ|B Chain B, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
Length = 863
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 28/170 (16%)
Query: 208 GCTVVNIGTQDLVEGRPHLILGLISQIIKIQLLADLNLKKTPQLVELVEDNSDVEELMGL 267
G +V+IG +++V+G + LG+I II + D+++++T
Sbjct: 80 GVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVEETS------------------ 121
Query: 268 APEKVLLKWMNYHLKKAGYEK-PVTNFSSDLKDGKAYTYLLNVLAPEHCNPATLDMKDPT 326
A E +LL W Y K A Y+ + NF KDG + L++ PE + L DP
Sbjct: 122 AKEGLLL-W--YQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPL 178
Query: 327 ERAKLVLDHAER-MDCKRYLSPKDIVEGSANLN----LAFVAQVFHQRSG 371
D AE+ +D + L +DIV G+A + + +V+ +H SG
Sbjct: 179 TNLNTAFDVAEKYLDIPKMLDAEDIV-GTARPDEKAIMTYVSSFYHAFSG 227
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 109/244 (44%), Gaps = 25/244 (10%)
Query: 393 REERCFRLWINS--LGIATYCNNVFEDVRNGWLLLEVLDKVSPGSVDWKQASKPPI-KMP 449
++ + F W NS T N+ ED R+G L+ +L+ +S ++ +KP KM
Sbjct: 8 QQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISG-----ERLAKPERGKMR 62
Query: 450 FRKVENCNQVIKIGKQLKFSLVNVAGNDFVQGNKKLILAFLWQ-LMRFNMLQLLKNLRSR 508
K+ N N+ + LV++ + V GN K+ L +W ++RF + +
Sbjct: 63 VHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDI------- 115
Query: 509 SQGKEITDAGILKWANDKVKSTGRTSQMESFKDKSLSNGLFFLELLSSVEPRVVNWNLVT 568
S + G+L W K + + +++F S +GL F L+ P ++++ +
Sbjct: 116 SVEETSAKEGLLLWYQRKT-APYKNVNIQNFH-ISWKDGLGFCALIHRHRPELIDYGKLR 173
Query: 569 KGESDEEKRLNATYIISVARKLGCSIFLLPEDIMEV---NQKMILTLTASIMY-WSLQQQ 624
K D LN + ++ + L L EDI+ ++K I+T +S + +S Q+
Sbjct: 174 K--DDPLTNLNTAFDVA-EKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSFYHAFSGAQK 230
Query: 625 VEEA 628
E A
Sbjct: 231 AETA 234
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 271 KVLLKWMNYHLKKAGYEKPVTNFSSDLKDGKAYTYLLNVLAPE 313
K W N HL+KAG + + N D +DG LL V++ E
Sbjct: 11 KTFTAWCNSHLRKAGTQ--IENIEEDFRDGLKLMLLLEVISGE 51
>pdb|2EYI|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin 1 At 1.7 Angstrom Resolution
pdb|2EYN|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin 1 At 1.8 Angstrom Resolution
Length = 234
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 103/233 (44%), Gaps = 24/233 (10%)
Query: 393 REERCFRLWINS--LGIATYCNNVFEDVRNGWLLLEVLDKVSPGSVDWKQASKPPI-KMP 449
++ + F W NS T N+ ED R+G L+ +L+ +S ++ +KP KM
Sbjct: 7 QQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISG-----ERLAKPERGKMR 61
Query: 450 FRKVENCNQVIKIGKQLKFSLVNVAGNDFVQGNKKLILAFLWQ-LMRFNMLQLLKNLRSR 508
K+ N N+ + LV++ + V GN K+ L +W ++RF + +
Sbjct: 62 VHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDI------- 114
Query: 509 SQGKEITDAGILKWANDKVKSTGRTSQMESFKDKSLSNGLFFLELLSSVEPRVVNWNLVT 568
S + G+L W K + + +++F S +GL F L+ P ++++ +
Sbjct: 115 SVEETSAKEGLLLWCQRKT-APYKNVNIQNFH-ISWKDGLGFCALIHRHRPELIDYGKLR 172
Query: 569 KGESDEEKRLNATYIISVARKLGCSIFLLPEDIMEV---NQKMILTLTASIMY 618
K D LN + ++ + L L EDI+ ++K I+T +S +
Sbjct: 173 K--DDPLTNLNTAFDVA-EKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSFYH 222
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 28/170 (16%)
Query: 208 GCTVVNIGTQDLVEGRPHLILGLISQIIKIQLLADLNLKKTPQLVELVEDNSDVEELMGL 267
G +V+IG +++V+G + LG+I II + D+++++T
Sbjct: 79 GVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVEETS------------------ 120
Query: 268 APEKVLLKWMNYHLKKAGYEKP-VTNFSSDLKDGKAYTYLLNVLAPEHCNPATLDMKDPT 326
A E +LL W K A Y+ + NF KDG + L++ PE + L DP
Sbjct: 121 AKEGLLL-WCQR--KTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPL 177
Query: 327 ERAKLVLDHAER-MDCKRYLSPKDIVEGSANLN----LAFVAQVFHQRSG 371
D AE+ +D + L +DIV G+A + + +V+ +H SG
Sbjct: 178 TNLNTAFDVAEKYLDIPKMLDAEDIV-GTARPDEKAIMTYVSSFYHAFSG 226
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 271 KVLLKWMNYHLKKAGYEKPVTNFSSDLKDGKAYTYLLNVLAPE 313
K W N HL+KAG + + N D +DG LL V++ E
Sbjct: 10 KTFTAWCNSHLRKAGTQ--IENIEEDFRDGLKLMLLLEVISGE 50
>pdb|2R0O|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin-4 Mutant(K255e)
pdb|2R0O|B Chain B, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin-4 Mutant(K255e)
Length = 237
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 102/233 (43%), Gaps = 24/233 (10%)
Query: 393 REERCFRLWINS--LGIATYCNNVFEDVRNGWLLLEVLDKVSPGSVDWKQASKPPI-KMP 449
++ + F W NS T N+ ED R+G L+ +L+ +S ++ KP KM
Sbjct: 12 QQRKTFTAWCNSHLRKAGTQIENIDEDFRDGLKLMLLLEVISG-----ERLPKPERGKMR 66
Query: 450 FRKVENCNQVIKIGKQLKFSLVNVAGNDFVQGNKKLILAFLWQ-LMRFNMLQLLKNLRSR 508
K+ N N+ + LV++ + V GN K+ L +W ++RF + +
Sbjct: 67 VHKINNVNKALDFIASKGVKLVSIGAEEIVDGNAKMTLGMIWTIILRFAIQDI------- 119
Query: 509 SQGKEITDAGILKWANDKVKSTGRTSQMESFKDKSLSNGLFFLELLSSVEPRVVNWNLVT 568
S + G+L W K + + +++F S +GL F L+ P ++ ++ +
Sbjct: 120 SVEETSAKEGLLLWCQRKT-APYKNVNVQNFH-ISWKDGLAFNALIHRHRPELIEYDKLR 177
Query: 569 KGESDEEKRLNATYIISVARKLGCSIFLLPEDIMEV---NQKMILTLTASIMY 618
K D LN + ++ + L L EDI+ +++ I+T +S +
Sbjct: 178 K--DDPVTNLNNAFEVA-EKYLDIPKMLDAEDIVNTARPDEEAIMTYVSSFYH 227
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 26/169 (15%)
Query: 208 GCTVVNIGTQDLVEGRPHLILGLISQIIKIQLLADLNLKKTPQLVELVEDNSDVEELMGL 267
G +V+IG +++V+G + LG+I II + D+++++T
Sbjct: 84 GVKLVSIGAEEIVDGNAKMTLGMIWTIILRFAIQDISVEETS------------------ 125
Query: 268 APEKVLLKWMNYHLKKAGYEK-PVTNFSSDLKDGKAYTYLLNVLAPEHCNPATLDMKDPT 326
A E +LL W K A Y+ V NF KDG A+ L++ PE L DP
Sbjct: 126 AKEGLLL-WCQR--KTAPYKNVNVQNFHISWKDGLAFNALIHRHRPELIEYDKLRKDDPV 182
Query: 327 ERAKLVLDHAER-MDCKRYLSPKDIVEGS---ANLNLAFVAQVFHQRSG 371
+ AE+ +D + L +DIV + + +V+ +H SG
Sbjct: 183 TNLNNAFEVAEKYLDIPKMLDAEDIVNTARPDEEAIMTYVSSFYHAFSG 231
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
Query: 271 KVLLKWMNYHLKKAGYEKPVTNFSSDLKDGKAYTYLLNVLAPEHC-NPATLDMK-DPTER 328
K W N HL+KAG + + N D +DG LL V++ E P M+
Sbjct: 15 KTFTAWCNSHLRKAGTQ--IENIDEDFRDGLKLMLLLEVISGERLPKPERGKMRVHKINN 72
Query: 329 AKLVLDHAERMDCKRY-LSPKDIVEGSANLNLAFV 362
LD K + ++IV+G+A + L +
Sbjct: 73 VNKALDFIASKGVKLVSIGAEEIVDGNAKMTLGMI 107
>pdb|3LUE|K Chain K, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|M Chain M, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|L Chain L, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|O Chain O, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|N Chain N, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|Q Chain Q, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|P Chain P, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|S Chain S, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|R Chain R, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|T Chain T, Model Of Alpha-Actinin Ch1 Bound To F-Actin
Length = 109
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 393 REERCFRLWINS--LGIATYCNNVFEDVRNGWLLLEVLDKVSPGSVDWKQASKPPI-KMP 449
++ + F W NS T N+ ED RNG L+ +L+ +S ++ +P KM
Sbjct: 5 QQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISG-----ERLPRPDKGKMR 59
Query: 450 FRKVENCNQVIKIGKQLKFSLVNVAGNDFVQGNKKLILAFLWQ-LMRF 496
F K+ N N+ + LV++ + V GN K+ L +W ++RF
Sbjct: 60 FHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRF 107
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 271 KVLLKWMNYHLKKAGYEKPVTNFSSDLKDGKAYTYLLNVLAPE 313
K W N HL+KAG + + N D ++G LL V++ E
Sbjct: 8 KTFTAWCNSHLRKAGTQ--IENIEEDFRNGLKLMLLLEVISGE 48
>pdb|4B7L|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain
With 1st Filamin Repeat
pdb|4B7L|B Chain B, Crystal Structure Of Human Filamin B Actin Binding Domain
With 1st Filamin Repeat
Length = 347
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 195 ENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLILGLISQIIKIQLLADLNLKKTPQLVEL 254
EN ++ L +V+I ++ +V+G LILGL+ +I ++ + +
Sbjct: 78 ENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSIS----------MPV 127
Query: 255 VEDNSDVEELMGLAPEKVLLKWMNYHLKKAGYEKPVTNFSSDLKDGKAYTYLLNVLAPEH 314
ED D ++ P++ LL W+ K Y P+TNF+ + +DGKA L++ AP
Sbjct: 128 WEDEGD-DDAKKQTPKQRLLGWIQ---NKIPY-LPITNFNQNWQDGKALGALVDSCAPGL 182
Query: 315 C-NPATLDMKDPTERAKLVLDHAER-MDCKRYLSPKDIVE 352
C + + D + P + A+ + A+ + + ++P++I+
Sbjct: 183 CPDWESWDPQKPVDNAREAMQQADDWLGVPQVITPEEIIH 222
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 79/201 (39%), Gaps = 25/201 (12%)
Query: 270 EKVLLKWMNYHLKKAGYEKPVTNFSSDLKDGKAYTYLLNVLAPE------HCNPATLDMK 323
+ +W N HLK K + N +DL DG LL VL+ + H P M+
Sbjct: 19 QNTFTRWCNEHLKSVN--KRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQ 76
Query: 324 DPTERAKLVLDHAERMDCKRY-LSPKDIVEGSANLNLAFV-AQVFHQRSGLTTDSKKISF 381
E + L+ +R K + K IV+G+ L L V + H + +
Sbjct: 77 --LENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSISMPV------W 128
Query: 382 AEMITDDVQTSREERCFRLWINSLGIATYCNNVFEDVRNGWLLLEVLDKVSPG-SVDWKQ 440
+ DD + ++ WI + N ++ ++G L ++D +PG DW+
Sbjct: 129 EDEGDDDAKKQTPKQRLLGWIQNKIPYLPITNFNQNWQDGKALGALVDSCAPGLCPDWES 188
Query: 441 ASKPPIKMPFRKVENCNQVIK 461
P + V+N + ++
Sbjct: 189 WD------PQKPVDNAREAMQ 203
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 394 EERCFRLWINSL--GIATYCNNVFEDVRNGWLLLEVLDKVSPGSVDWKQASKPPIKMPFR 451
++ F W N + N+ D+ +G L+ +L+ +S + K +P +
Sbjct: 18 QQNTFTRWCNEHLKSVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQ--M 75
Query: 452 KVENCNQVIKIGKQLKFSLVNVAGNDFVQGNKKLILAFLWQLM 494
++EN + ++ + LV++ V GN KLIL +W L+
Sbjct: 76 QLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLI 118
>pdb|2WA5|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain
At 1.9 Angstroms Resolution
Length = 245
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 195 ENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLILGLISQIIKIQLLADLNLKKTPQLVEL 254
EN ++ L +V+I ++ +V+G LILGL+ +I ++ + +
Sbjct: 81 ENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSIS----------MPV 130
Query: 255 VEDNSDVEELMGLAPEKVLLKWMNYHLKKAGYEKPVTNFSSDLKDGKAYTYLLNVLAPEH 314
ED D ++ P++ LL W+ K Y P+TNF+ + +DGKA L++ AP
Sbjct: 131 WEDEGD-DDAKKQTPKQRLLGWIQ---NKIPY-LPITNFNQNWQDGKALGALVDSCAPGL 185
Query: 315 C-NPATLDMKDPTERAKLVLDHA-ERMDCKRYLSPKDIVE 352
C + + D + P + A+ + A + + + ++P++I+
Sbjct: 186 CPDWESWDPQKPVDNAREAMQQADDWLGVPQVITPEEIIH 225
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 25/196 (12%)
Query: 275 KWMNYHLKKAGYEKPVTNFSSDLKDGKAYTYLLNVLAPE------HCNPATLDMKDPTER 328
+W N HLK K + N +DL DG LL VL+ + H P M+ E
Sbjct: 27 RWCNEHLKCVN--KRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQ--LEN 82
Query: 329 AKLVLDHAERMDCKRY-LSPKDIVEGSANLNLAFVAQ-VFHQRSGLTTDSKKISFAEMIT 386
+ L+ +R K + K IV+G+ L L V + H + + +
Sbjct: 83 VSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSISMPV------WEDEGD 136
Query: 387 DDVQTSREERCFRLWINSLGIATYCNNVFEDVRNGWLLLEVLDKVSPG-SVDWKQASKPP 445
DD + ++ WI + N ++ ++G L ++D +PG DW+
Sbjct: 137 DDAKKQTPKQRLLGWIQNKIPYLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWD--- 193
Query: 446 IKMPFRKVENCNQVIK 461
P + V+N + ++
Sbjct: 194 ---PQKPVDNAREAMQ 206
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 394 EERCFRLWINSL--GIATYCNNVFEDVRNGWLLLEVLDKVSPGSVDWKQASKPPIKMPFR 451
++ F W N + N+ D+ +G L+ +L+ +S + K +P +
Sbjct: 21 QQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQ--M 78
Query: 452 KVENCNQVIKIGKQLKFSLVNVAGNDFVQGNKKLILAFLWQLM 494
++EN + ++ + LV++ V GN KLIL +W L+
Sbjct: 79 QLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLI 121
>pdb|2WA7|A Chain A, Structure Of The M202v Mutant Of Human Filamin B Actin
Binding Domain At 1.85 Angstroms Resolution
Length = 245
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 195 ENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLILGLISQIIKIQLLADLNLKKTPQLVEL 254
EN ++ L +V+I ++ +V+G LILGL+ +I ++ + +
Sbjct: 81 ENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSIS----------MPV 130
Query: 255 VEDNSDVEELMGLAPEKVLLKWMNYHLKKAGYEKPVTNFSSDLKDGKAYTYLLNVLAPEH 314
ED D ++ P++ LL W+ K Y P+TNF+ + +DGKA L++ AP
Sbjct: 131 WEDEGD-DDAKKQTPKQRLLGWIQ---NKIPY-LPITNFNQNWQDGKALGALVDSCAPGL 185
Query: 315 C-NPATLDMKDPTERAKLVLDHA-ERMDCKRYLSPKDIVE 352
C + + D + P + A+ + A + + + ++P++I+
Sbjct: 186 CPDWESWDPQKPVDNAREAVQQADDWLGVPQVITPEEIIH 225
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 25/196 (12%)
Query: 275 KWMNYHLKKAGYEKPVTNFSSDLKDGKAYTYLLNVLAPE------HCNPATLDMKDPTER 328
+W N HLK K + N +DL DG LL VL+ + H P M+ E
Sbjct: 27 RWCNEHLKCVN--KRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQ--LEN 82
Query: 329 AKLVLDHAERMDCKRY-LSPKDIVEGSANLNLAFVAQ-VFHQRSGLTTDSKKISFAEMIT 386
+ L+ +R K + K IV+G+ L L V + H + + +
Sbjct: 83 VSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSISMPV------WEDEGD 136
Query: 387 DDVQTSREERCFRLWINSLGIATYCNNVFEDVRNGWLLLEVLDKVSPG-SVDWKQASKPP 445
DD + ++ WI + N ++ ++G L ++D +PG DW+
Sbjct: 137 DDAKKQTPKQRLLGWIQNKIPYLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWD--- 193
Query: 446 IKMPFRKVENCNQVIK 461
P + V+N + ++
Sbjct: 194 ---PQKPVDNAREAVQ 206
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 394 EERCFRLWINSL--GIATYCNNVFEDVRNGWLLLEVLDKVSPGSVDWKQASKPPIKMPFR 451
++ F W N + N+ D+ +G L+ +L+ +S + K +P +
Sbjct: 21 QQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQ--M 78
Query: 452 KVENCNQVIKIGKQLKFSLVNVAGNDFVQGNKKLILAFLWQLM 494
++EN + ++ + LV++ V GN KLIL +W L+
Sbjct: 79 QLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLI 121
>pdb|3FER|A Chain A, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|B Chain B, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|C Chain C, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|D Chain D, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a
Length = 262
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 77/160 (48%), Gaps = 17/160 (10%)
Query: 195 ENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLILGLISQIIKIQLLADLNLKKTPQLVEL 254
EN ++ L +V+I ++ +V+G LILGL+ +I ++ +
Sbjct: 88 ENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSIS----------XPV 137
Query: 255 VEDNSDVEELMGLAPEKVLLKWMNYHLKKAGYEKPVTNFSSDLKDGKAYTYLLNVLAPEH 314
ED D ++ P++ LL W+ K Y P+TNF+ + +DGKA L++ AP
Sbjct: 138 WEDEGD-DDAKKQTPKQRLLGWIQ---NKIPY-LPITNFNQNWQDGKALGALVDSCAPGL 192
Query: 315 C-NPATLDMKDPTERAKLVLDHAER-MDCKRYLSPKDIVE 352
C + + D + P + A+ A+ + + ++P++I+
Sbjct: 193 CPDWESWDPQKPVDNAREAXQQADDWLGVPQVITPEEIIH 232
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 394 EERCFRLWINSL--GIATYCNNVFEDVRNGWLLLEVLDKVSPGSVDWKQASKPPIKMPFR 451
++ F W N + N+ D+ +G L+ +L+ +S K +P +
Sbjct: 28 QQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRXYRKYHQRPTFRQ--X 85
Query: 452 KVENCNQVIKIGKQLKFSLVNVAGNDFVQGNKKLILAFLWQLM 494
++EN + ++ + LV++ V GN KLIL +W L+
Sbjct: 86 QLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLI 128
>pdb|3HOC|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
Mutant E254k
pdb|3HOC|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
Mutant E254k
Length = 272
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 93/197 (47%), Gaps = 25/197 (12%)
Query: 161 DGVLLCKLINIAVPGTIDERAINTKRVINPWERN---ENHTLCLNSAKAIGCTVVNIGTQ 217
DG+ L L+ + + ++ ++ K P R EN ++ L +V+I ++
Sbjct: 76 DGLRLIALLEV-----LSQKKMHRKHNQRPTFRQMQLENVSVALEFLDRESIKLVSIDSK 130
Query: 218 DLVEGRPHLILGLISQIIKIQLLADLNLKKTPQLVELVEDNSDVEELMGLAPEKVLLKWM 277
+V+G LILGLI +I L +++ P E ++ + + P++ LL W+
Sbjct: 131 AIVDGNLKLILGLIWTLI---LHYSISM---PMWDEEEDEEAKKQ-----TPKQRLLGWI 179
Query: 278 NYHLKKAGYEKPVTNFSSDLKDGKAYTYLLNVLAPEHC-NPATLDMKDPTERAKLVLDHA 336
L + P+TNFS D + G+A L++ AP C + + D P A+ + A
Sbjct: 180 QNKLPQL----PITNFSRDWQSGRALGALVDSCAPGLCPDWDSWDASKPVTNAREAMQQA 235
Query: 337 -ERMDCKRYLSPKDIVE 352
+ + + ++P++IV+
Sbjct: 236 DDWLGIPQVITPEEIVD 252
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 394 EERCFRLWINSL--GIATYCNNVFEDVRNGWLLLEVLDKVSPGSVDWKQASKPPIKMPFR 451
++ F W N ++ N+ D+ +G L+ +L+ +S + K +P +
Sbjct: 48 QQNTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQ--M 105
Query: 452 KVENCNQVIKIGKQLKFSLVNVAGNDFVQGNKKLILAFLWQLM 494
++EN + ++ + LV++ V GN KLIL +W L+
Sbjct: 106 QLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLIWTLI 148
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 11/95 (11%)
Query: 275 KWMNYHLKKAGYEKPVTNFSSDLKDGKAYTYLLNVLAPEHCN------PATLDMKDPTER 328
+W N HLK K + N +DL DG LL VL+ + + P M+ E
Sbjct: 54 RWCNEHLK--CVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQ--LEN 109
Query: 329 AKLVLDHAERMDCKRY-LSPKDIVEGSANLNLAFV 362
+ L+ +R K + K IV+G+ L L +
Sbjct: 110 VSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLI 144
>pdb|3HOP|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
pdb|3HOP|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
pdb|3HOR|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
(Reduced)
pdb|3HOR|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
(Reduced)
Length = 272
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 93/197 (47%), Gaps = 25/197 (12%)
Query: 161 DGVLLCKLINIAVPGTIDERAINTKRVINPWERN---ENHTLCLNSAKAIGCTVVNIGTQ 217
DG+ L L+ + + ++ ++ K P R EN ++ L +V+I ++
Sbjct: 76 DGLRLIALLEV-----LSQKKMHRKHNQRPTFRQMQLENVSVALEFLDRESIKLVSIDSK 130
Query: 218 DLVEGRPHLILGLISQIIKIQLLADLNLKKTPQLVELVEDNSDVEELMGLAPEKVLLKWM 277
+V+G LILGLI +I L +++ P E ++ + + P++ LL W+
Sbjct: 131 AIVDGNLKLILGLIWTLI---LHYSISM---PMWDEEEDEEAKKQ-----TPKQRLLGWI 179
Query: 278 NYHLKKAGYEKPVTNFSSDLKDGKAYTYLLNVLAPEHC-NPATLDMKDPTERAKLVLDHA 336
L + P+TNFS D + G+A L++ AP C + + D P A+ + A
Sbjct: 180 QNKLPQL----PITNFSRDWQSGRALGALVDSCAPGLCPDWDSWDASKPVTNAREAMQQA 235
Query: 337 -ERMDCKRYLSPKDIVE 352
+ + + ++P++IV+
Sbjct: 236 DDWLGIPQVITPEEIVD 252
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 394 EERCFRLWINSL--GIATYCNNVFEDVRNGWLLLEVLDKVSPGSVDWKQASKPPIKMPFR 451
++ F W N ++ N+ D+ +G L+ +L+ +S + K +P +
Sbjct: 48 QQNTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQ--M 105
Query: 452 KVENCNQVIKIGKQLKFSLVNVAGNDFVQGNKKLILAFLWQLM 494
++EN + ++ + LV++ V GN KLIL +W L+
Sbjct: 106 QLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLIWTLI 148
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 11/95 (11%)
Query: 275 KWMNYHLKKAGYEKPVTNFSSDLKDGKAYTYLLNVLAPEHCN------PATLDMKDPTER 328
+W N HLK K + N +DL DG LL VL+ + + P M+ E
Sbjct: 54 RWCNEHLK--CVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQ--LEN 109
Query: 329 AKLVLDHAERMDCKRY-LSPKDIVEGSANLNLAFV 362
+ L+ +R K + K IV+G+ L L +
Sbjct: 110 VSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLI 144
>pdb|2WFN|A Chain A, Filamin A Actin Binding Domain
pdb|2WFN|B Chain B, Filamin A Actin Binding Domain
Length = 278
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 93/197 (47%), Gaps = 25/197 (12%)
Query: 161 DGVLLCKLINIAVPGTIDERAINTKRVINPWERN---ENHTLCLNSAKAIGCTVVNIGTQ 217
DG+ L L+ + + ++ ++ K P R EN ++ L +V+I ++
Sbjct: 73 DGLRLIALLEV-----LSQKKMHRKHNQRPTFRQMQLENVSVALEFLDRESIKLVSIDSK 127
Query: 218 DLVEGRPHLILGLISQIIKIQLLADLNLKKTPQLVELVEDNSDVEELMGLAPEKVLLKWM 277
+V+G LILGLI +I L +++ P E ++ + + P++ LL W+
Sbjct: 128 AIVDGNLKLILGLIWTLI---LHYSISM---PMWDEEEDEEAKKQ-----TPKQRLLGWI 176
Query: 278 NYHLKKAGYEKPVTNFSSDLKDGKAYTYLLNVLAPEHC-NPATLDMKDPTERAKLVLDHA 336
L + P+TNFS D + G+A L++ AP C + + D P A+ + A
Sbjct: 177 QNKLPQL----PITNFSRDWQSGRALGALVDSCAPGLCPDWDSWDASKPVTNAREAMQQA 232
Query: 337 -ERMDCKRYLSPKDIVE 352
+ + + ++P++IV+
Sbjct: 233 DDWLGIPQVITPEEIVD 249
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 394 EERCFRLWINSL--GIATYCNNVFEDVRNGWLLLEVLDKVSPGSVDWKQASKPPIKMPFR 451
++ F W N ++ N+ D+ +G L+ +L+ +S + K +P +
Sbjct: 45 QQNTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQ--M 102
Query: 452 KVENCNQVIKIGKQLKFSLVNVAGNDFVQGNKKLILAFLWQLM 494
++EN + ++ + LV++ V GN KLIL +W L+
Sbjct: 103 QLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLIWTLI 145
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 11/95 (11%)
Query: 275 KWMNYHLKKAGYEKPVTNFSSDLKDGKAYTYLLNVLAPEHCN------PATLDMKDPTER 328
+W N HLK K + N +DL DG LL VL+ + + P M+ E
Sbjct: 51 RWCNEHLK--CVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQ--LEN 106
Query: 329 AKLVLDHAERMDCKRY-LSPKDIVEGSANLNLAFV 362
+ L+ +R K + K IV+G+ L L +
Sbjct: 107 VSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLI 141
>pdb|2WA6|A Chain A, Structure Of The W148r Mutant Of Human Filamin B Actin
Binding Domain At 1.95 Angstroms Resolution
Length = 245
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 77/160 (48%), Gaps = 17/160 (10%)
Query: 195 ENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLILGLISQIIKIQLLADLNLKKTPQLVEL 254
EN ++ L +V+I ++ +V+G LILGL+ +I ++ + +
Sbjct: 81 ENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSIS----------MPV 130
Query: 255 VEDNSDVEELMGLAPEKVLLKWMNYHLKKAGYEKPVTNFSSDLKDGKAYTYLLNVLAPEH 314
ED D + +++L + N K Y P+TNF+ + +DGKA L++ AP
Sbjct: 131 WEDEGDDDAKKQTPKQRLLGRIQN----KIPY-LPITNFNQNWQDGKALGALVDSCAPGL 185
Query: 315 C-NPATLDMKDPTERAKLVLDHAER-MDCKRYLSPKDIVE 352
C + + D + P + A+ + A+ + + ++P++I+
Sbjct: 186 CPDWESWDPQKPVDNAREAMQQADDWLGVPQVITPEEIIH 225
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 394 EERCFRLWINSL--GIATYCNNVFEDVRNGWLLLEVLDKVSPGSVDWKQASKPPIKMPFR 451
++ F W N + N+ D+ +G L+ +L+ +S + K +P +
Sbjct: 21 QQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQ--M 78
Query: 452 KVENCNQVIKIGKQLKFSLVNVAGNDFVQGNKKLILAFLWQLM 494
++EN + ++ + LV++ V GN KLIL +W L+
Sbjct: 79 QLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLI 121
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 11/95 (11%)
Query: 275 KWMNYHLKKAGYEKPVTNFSSDLKDGKAYTYLLNVLAPE------HCNPATLDMKDPTER 328
+W N HLK K + N +DL DG LL VL+ + H P M+ E
Sbjct: 27 RWCNEHLKCVN--KRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQ--LEN 82
Query: 329 AKLVLDHAERMDCKRY-LSPKDIVEGSANLNLAFV 362
+ L+ +R K + K IV+G+ L L V
Sbjct: 83 VSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLV 117
>pdb|2D87|A Chain A, Solution Structure Of The Ch Domain From Human Smoothelin
Splice Isoform L2
Length = 128
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 270 EKVLLKWMNYHLKKAGYEK-PVTNFSSDLKDGKAYTYLLNVLAPEHCNPATLDMKDPTER 328
+++LL W K GYE + NFSS DG A+ L++ PE + L ++ +
Sbjct: 9 KQMLLDWCR--AKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSPQNRRQN 66
Query: 329 AKLVLDHAE-RMDCKRYLSPKDIV 351
++ AE DC + L +D+V
Sbjct: 67 FEVAFSSAETHADCPQLLDTEDMV 90
>pdb|1WYM|A Chain A, Solution Structure Of The Ch Domain Of Human Transgelin-2
Length = 155
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 14/113 (12%)
Query: 270 EKVLLKWMNYHLKK-AGYEKP-VTNFSSDLKDGKAYTYLLNVLAPEHCNP------ATLD 321
E++L++W+ +K G +P NF + LKDG L+N L PE P +T+
Sbjct: 19 EQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQASTMA 78
Query: 322 MKDPTERAKLVLDHAER--MDCKRYLSPKDIVEGSANLNLAFVAQVFHQRSGL 372
K E+ L AER ++ D+ EG N+A V + GL
Sbjct: 79 FKQ-MEQISQFLQAAERYGINTTDIFQTVDLWEGK---NMACVQRTLMNLGGL 127
>pdb|1H67|A Chain A, Nmr Structure Of The Ch Domain Of Calponin
Length = 108
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 395 ERCFRLWINSLGIATYCNNVFEDVRNGWLLLEVLDKVSPGSVDWKQASKPPIKMPFRKVE 454
ER R+WI +N + +++G +L E+++K+ PGSV Q P++ + K+E
Sbjct: 5 ERQLRVWIEGATGRRIGDNFMDGLKDGVILCELINKLQPGSV---QKVNDPVQ-NWHKLE 60
Query: 455 NCNQVIK 461
N ++
Sbjct: 61 NIGNFLR 67
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 11/77 (14%)
Query: 153 NDLFDLAKDGVLLCKLINIAVPGTIDERAINTKRVINP---WERNENHTLCLNSAKAIGC 209
++ D KDGV+LC+LIN PG++ ++V +P W + EN L + K G
Sbjct: 22 DNFMDGLKDGVILCELINKLQPGSV-------QKVNDPVQNWHKLENIGNFLRAIKHYGV 74
Query: 210 TVVNI-GTQDLVEGRPH 225
+I DL E H
Sbjct: 75 KPHDIFEANDLFENTNH 91
>pdb|2D89|A Chain A, Solution Structure Of The Ch Domain From Human Eh Domain
Binding Protein 1
Length = 119
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 290 VTNFSSDLKDGKAYTYLLNVLAPEHCNPATLDMKDPTERAKLVLDHAERMDCKRYLSPKD 349
+TNF++ ++G ++ +L+ P+ + +L+ +D E K D + R L P D
Sbjct: 30 ITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKENNKKAYDGFASIGISRLLEPSD 89
Query: 350 IV 351
+V
Sbjct: 90 MV 91
>pdb|2YRN|A Chain A, Solution Structure Of The Ch Domain From Human Neuron
Navigator 2
Length = 129
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 270 EKVLLKWMNYHLKKAGYEKPVTNFSSDLKDGKAYTYLLNVLAPEHCNPATLDMKD-PTER 328
+++ W N++L K+G+++ + + D+ DG ++ V+A E D+ P R
Sbjct: 20 KRIYTDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIE----DINGCPKNR 75
Query: 329 AKLVLDHAERMD-CKRYLSPKDI 350
++++ E +D C +L+ K I
Sbjct: 76 SQMI----ENIDACLNFLAAKGI 94
>pdb|1WYP|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin 1
Length = 136
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 393 REERCFRLWINSLGIATYCNNVFEDVRNGWLLLEVLDKVSPGSV 436
+ E+ R WI + NN + +++G +L E ++K+ PGSV
Sbjct: 17 QREQELREWIEGVTGRRIGNNFMDGLKDGIILCEFINKLQPGSV 60
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 153 NDLFDLAKDGVLLCKLINIAVPGTI 177
N+ D KDG++LC+ IN PG++
Sbjct: 36 NNFMDGLKDGIILCEFINKLQPGSV 60
>pdb|3N9I|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Yersinia Pestis Co92
pdb|3N9I|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Yersinia Pestis Co92
Length = 346
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 520 LKWANDKVKSTGRTSQMESFKDKS------LSNGLFFLELLSSVEPRVVNWNLVTKGESD 573
L WA + G S+M FKDKS ++ GLF +L + + + N V GE
Sbjct: 103 LSWALNCYTYFGELSRMTQFKDKSARYAENINAGLFDYPVLMAADILLYQTNQVPVGEDQ 162
Query: 574 EEKRLNATYIISVARKLGCSIFLLPEDIMEVNQKMILTL 612
++ + I S L IF +PE + +++L
Sbjct: 163 KQHLELSRDIASRFNNLYGDIFKIPEPFIPKAGARVMSL 201
>pdb|2L3G|A Chain A, Solution Nmr Structure Of Ch Domain Of Rho Guanine
Nucleotide Exchange Factor 7 From Homo Sapiens,
Northeast Structural Genomics Consortium Target Hr4495e
Length = 126
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 12/52 (23%)
Query: 160 KDGVLLCKLINIAVPGTIDERAINTKRVINPWERNENHTLCLNSAKAI--GC 209
KDGV+LC+L+ +PGTI++ + P R+E+ CL++ + GC
Sbjct: 46 KDGVVLCRLLERLLPGTIEK--------VYPEPRSESE--CLSNIREFLRGC 87
>pdb|2W49|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 159
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 34 KNQNGKVTVADLPPVMAKLKAFSTMFTEEDIKGILAESYAGAGDEIDFEAFLRAYINLQ 92
KN +G + + +L + L+A TEEDI+ ++ +S IDF+ FL+ +Q
Sbjct: 104 KNADGFIDIEELGEI---LRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMMEGVQ 159
>pdb|4TNC|A Chain A, Refined Structure Of Chicken Skeletal Muscle Troponin C In
The Two-Calcium State At 2-Angstroms Resolution
Length = 162
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 34 KNQNGKVTVADLPPVMAKLKAFSTMFTEEDIKGILAESYAGAGDEIDFEAFLRAYINLQ 92
KN +G + + +L + L+A TEEDI+ ++ +S IDF+ FL+ +Q
Sbjct: 107 KNADGFIDIEELGEI---LRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMMEGVQ 162
>pdb|5TNC|A Chain A, Refined Crystal Structure Of Troponin C From Turkey
Skeletal Muscle At 2.0 Angstroms Resolution
Length = 162
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 34 KNQNGKVTVADLPPVMAKLKAFSTMFTEEDIKGILAESYAGAGDEIDFEAFLRAYINLQ 92
KN +G + + +L + L+A TEEDI+ ++ +S IDF+ FL+ +Q
Sbjct: 107 KNADGFIDIEELGEI---LRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMMEGVQ 162
>pdb|1YTZ|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Activated State
pdb|1YV0|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Free State
pdb|1NCX|A Chain A, Troponin C
pdb|1NCY|A Chain A, Troponin-C, Complex With Manganese
pdb|1NCZ|A Chain A, Troponin C
pdb|1TOP|A Chain A, Structure Of Chicken Skeletal Muscle Troponin-C At 1.78
Angstroms Resolution
Length = 162
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 34 KNQNGKVTVADLPPVMAKLKAFSTMFTEEDIKGILAESYAGAGDEIDFEAFLRAYINLQ 92
KN +G + + +L + L+A TEEDI+ ++ +S IDF+ FL+ +Q
Sbjct: 107 KNADGFIDIEELGEI---LRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMMEGVQ 162
>pdb|3M16|A Chain A, Structure Of A Transaldolase From Oleispira Antarctica
Length = 329
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 73/177 (41%), Gaps = 45/177 (25%)
Query: 102 AKNSSSFLKASTTTLLHTISESEKASYVAHINSYLGDDPFLKQFLPLDPTTNDLFDLAKD 161
AKN LKA TT + T GD +KQF P+D TTN
Sbjct: 6 AKNKLEALKAXTTVVADT-----------------GDIEAIKQFKPVDATTNP------- 41
Query: 162 GVLLCKLINIAVPGTIDERAINTKRVINPWERNENHTLCLNSAKAIGCTV-VNIGTQDLV 220
L+ K +A + E AI+ I ++N TL + +G + VNIG + L
Sbjct: 42 -SLILKAAKLANYQHLIEEAIDWALQIKGNDKNSQTTL-----ENVGDKLAVNIGCEVLT 95
Query: 221 EGRPHLILGLISQIIKIQLLADLN--LKKTPQLVELVEDNSDVEELMGLAPEKVLLK 275
I G+IS + +L D + K +L+ L +D G+ +++L+K
Sbjct: 96 S-----IPGVISTEVDARLSFDTQATVAKARKLIRLYQD-------AGIDSDRILIK 140
>pdb|1WYN|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin-2
Length = 146
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 160 KDGVLLCKLINIAVPGTIDERAINTKRVINPWERNENHTLCLNSAKAIGCTVVNIGTQDL 219
KDG +LC L+N PG++ + IN R + W + EN + + + + G V DL
Sbjct: 43 KDGTILCTLMNKLQPGSVPK--IN--RSMQNWHQLENLSNFIKAMVSYGMNPV-----DL 93
Query: 220 VEGRPHLILGLISQIIKIQLLADLNLKKTPQLVELVE 256
E G ++Q +++ LLA KT L V+
Sbjct: 94 FEANDLFESGNMTQ-VQVSLLALAGKAKTKGLQSGVD 129
>pdb|1WYR|A Chain A, Solution Structure Of The Ch Domain Of Human Rho Guanine
Nucleotide Exchange Factor 6
Length = 121
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 20/24 (83%)
Query: 160 KDGVLLCKLINIAVPGTIDERAIN 183
K+GV+LCKLIN +PG++++ ++
Sbjct: 40 KNGVVLCKLINRLMPGSVEKFCLD 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,138,315
Number of Sequences: 62578
Number of extensions: 866673
Number of successful extensions: 2406
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2272
Number of HSP's gapped (non-prelim): 113
length of query: 743
length of database: 14,973,337
effective HSP length: 106
effective length of query: 637
effective length of database: 8,340,069
effective search space: 5312623953
effective search space used: 5312623953
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 55 (25.8 bits)