Query 004589
Match_columns 743
No_of_seqs 456 out of 3480
Neff 7.2
Searched_HMMs 29240
Date Tue Mar 26 18:02:21 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004589.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1891-1895//hhsearch_pdb/004589hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pxy_A Fimbrin-like protein; c 1.0 1 1 880.1 40.9 506 117-623 1-506 (506)
2 1rt8_A Fimbrin; filamentous ac 1.0 1 1 855.5 42.2 504 113-619 2-513 (513)
3 1aoa_A T-fimbrin; actin-bindin 1.0 1 1 417.8 22.2 261 105-367 6-275 (275)
4 4b7l_A Filamin-B; structural p 1.0 1 1 412.8 15.6 231 383-624 7-245 (347)
5 3hoc_A Filamin-A; calponin hom 1.0 1 1 396.0 14.4 226 383-619 37-270 (272)
6 3f7p_A Plectin-1; plakin, hemi 1.0 1 1 392.1 15.1 223 387-624 67-296 (296)
7 1sjj_A Actinin; 3-helix bundle 1.0 1 1 389.9 10.7 256 117-406 2-270 (863)
8 1wku_A Alpha-actinin 3; calpon 1.0 1 1 383.1 16.7 225 384-625 18-249 (254)
9 2wa7_A Filamin-B; disease muta 1.0 1 1 379.1 17.3 226 383-619 10-243 (245)
10 1sh5_A Plectin 1, PLTN, PCN; a 1.0 1 1 375.8 15.5 227 384-625 3-241 (245)
No 1
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=1.00 E-value=1 Score=880.14 Aligned_cols=506 Identities=80% Similarity=1.280 Sum_probs=478.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 44432345668999998441899853345799987235898724459999999998599853311146798982699999
Q 004589 117 LHTISESEKASYVAHINSYLGDDPFLKQFLPLDPTTNDLFDLAKDGVLLCKLINIAVPGTIDERAINTKRVINPWERNEN 196 (743)
Q Consensus 117 ~~~i~e~e~~~~~~wiN~~L~~~~~~~~~lpi~~~v~dl~~dl~DGviL~~Lie~l~~~~i~~~~i~~~~~~~~~~~~eN 196 (743)
+++++++|+++|++|||.+|++++++++++|+++.+.||++||+||++||+|+|++.|++++++++++++..++++++||
T Consensus 1 ~~~~~~~q~~~f~~WIN~~L~~~~~~~~~l~~~~~v~~l~~dL~DGv~L~~Lin~l~~~~i~~~~in~~~~~~~~~~~eN 80 (506)
T 1pxy_A 1 GSPGIQSEKGPFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNEN 80 (506)
T ss_dssp ------CTHHHHHHHHHHHHTTCTTTTTTCSCCTTSSHHHHHSTTSHHHHHHHHHHSTTSSCGGGSCCCSSCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 99998899999999999985457443445899996668999923639999999997688778420376332467899999
Q ss_pred HHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHHHHHCCCHHHHHHHH
Q ss_conf 99999999980971200485321257025686336664344322123335573101002477036774158939999999
Q 004589 197 HTLCLNSAKAIGCTVVNIGTQDLVEGRPHLILGLISQIIKIQLLADLNLKKTPQLVELVEDNSDVEELMGLAPEKVLLKW 276 (743)
Q Consensus 197 ~~~~L~~~k~~G~~~~~i~~~div~G~~~~iL~LiwqLi~~~~l~~i~l~~~p~l~~l~~~~e~~~~~~~~s~e~~LL~W 276 (743)
++.+|++++..|+.+++|+++||++|+.++||||+||||++|+++.++++.+|++.++..++++++++...++++.||+|
T Consensus 81 i~~~L~~~k~~g~~~~~i~~~Dl~dg~~~liLgLiw~li~~~~l~~i~~~~~p~l~~l~~~~e~~~~~~~~~~~~~LL~W 160 (506)
T 1pxy_A 81 HTLCLNSAKAVGCSVVNIGTQDLAEGRPHLVLGLISQLIKIQLLADLNLKKTPQLVELLEDSDDVEELLRLPPEKVLLKW 160 (506)
T ss_dssp HHHHHHHHHHTTCCCTTCCHHHHHHTCHHHHHHHHHHHHHHHHHSSSSSCC-----------------CCSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHCCCHHHHHHHH
T ss_conf 99999999993998678888887569737899999999999998760001287888861388634444027878999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99895322987653468777755088999987438999999979999988789999976621697432476543346855
Q 004589 277 MNYHLKKAGYEKPVTNFSSDLKDGKAYTYLLNVLAPEHCNPATLDMKDPTERAKLVLDHAERMDCKRYLSPKDIVEGSAN 356 (743)
Q Consensus 277 vn~~L~~~~~~~~V~nFssd~~DG~~l~~Li~~~~P~~~~~~~l~~~~~~~n~~~a~~~a~~lGi~~~l~peDi~~~~~~ 356 (743)
||.+++++||..+|+||++||+||++||+|+|++.|+.++++.+..++..+|+++||+.|+++|||++++|+||++++++
T Consensus 161 ~n~~l~~~g~~~~v~nFs~s~~DG~a~~~Ll~~~~P~~i~~~~l~~~~~~~n~~~a~~~a~~lGi~~~l~peDi~~~~~k 240 (506)
T 1pxy_A 161 MNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEHCDPATLDAKDPLERAELVLSHAERMNCKRYLTAEEIVEGSST 240 (506)
T ss_dssp HHHHHHHTTCCSCCCCSSTTTTTSHHHHHHHHHHCGGGCCGGGGGCCSHHHHHHHHHHHHHHTTCCCCCCHHHHHTTCHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCHH
T ss_conf 99988754998667466553313699999999867364462228957899999999999997699882899997367814
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 06786756655248998530000101000011124354699999998406876554124754669999999998399976
Q 004589 357 LNLAFVAQVFHQRSGLTTDSKKISFAEMITDDVQTSREERCFRLWINSLGIATYCNNVFEDVRNGWLLLEVLDKVSPGSV 436 (743)
Q Consensus 357 ~~l~yla~L~~~~~~l~~~~~~~~~~~~~~~d~~~~~q~~~f~~WiN~~~~~~~v~~L~~Dl~DG~~L~~lle~l~~~~v 436 (743)
++|+|+++||++++++.+.. ...+.+++.+++|+.+|+++|++|||+++.++.|+||++||+||++||+|+|+++|+++
T Consensus 241 ~v~tyva~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~q~ktf~~WiN~~~~~~~v~dl~~Dl~DG~~L~~Lle~l~~~~~ 319 (506)
T 1pxy_A 241 LNLAFVAQIFHERNGLNKDG-KYAFAEMMTEDVETCRDERCYRLWINSLGIDSYVNNVFEDVRNGWILLEVLDKVSPSSV 319 (506)
T ss_dssp HHHHHHHHHHHHCCCCC--------------CCHHHHHHHHHHHHHTTTTCSSCCSCHHHHTTTSHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999765447999743-21045430026688999999999998049999845489998719999999999768865
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf 65445789999725799879999999884100246777753235705789999999998887764331102578965694
Q 004589 437 DWKQASKPPIKMPFRKVENCNQVIKIGKQLKFSLVNVAGNDFVQGNKKLILAFLWQLMRFNMLQLLKNLRSRSQGKEITD 516 (743)
Q Consensus 437 ~~k~~~~~~~~~~~~~ieN~~~~l~~lk~~g~~l~~I~~~DIvdG~~k~iL~LlW~l~~~~i~~~~~~~~~~~~g~~~~~ 516 (743)
+|+.++++|+++|+|+++||+.||+|++..|++++||+++||++||.|+||||+|+||||++.+++..++.+..|+.+++
T Consensus 320 ~~~~~~~~~~~~r~~~leNv~~aL~~~k~~~v~l~~I~~~dIvdg~~kl~L~Liw~lir~~i~~~~~~l~~~~~~~~~~~ 399 (506)
T 1pxy_A 320 NWKHASKPPIKMPFRKVENCNQVIKIGKQLKFSLVNVAGNDIVQGNKKLILGLLWQLMRFHMLQLLKSLRSRTLGKEMTD 399 (506)
T ss_dssp CGGGCCCSSCCCHHHHHHHHHHHHHHHHHTTCCCCSCCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCC-----CCCH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 61003678651489999999999999997187646888888766778889999999999866778777640456554469
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 67778895772216996323469877888738999986410899431144458999489987699999999983997424
Q 004589 517 AGILKWANDKVKSTGRTSQMESFKDKSLSNGLFFLELLSSVEPRVVNWNLVTKGESDEEKRLNATYIISVARKLGCSIFL 596 (743)
Q Consensus 517 ~~LL~W~~~~~~~~~~~~~i~nfsd~s~~dG~af~aLi~~~~P~~i~~~~l~~~~s~~~~~~n~~~a~~~A~~lGi~~ll 596 (743)
++||+|||.++.+|++++.|+||+|+||+||+|||||||+|+|++++|+.+.++.+++++++|+++||++|++||||+++
T Consensus 400 ~~LL~W~~~~~~~~~~~~~i~nF~d~s~~dG~a~~aLi~~~~P~li~~~~l~~~~s~~~~~~N~~~a~~~a~~lGi~~~l 479 (506)
T 1pxy_A 400 ADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNLVTKGETDDEKRLNATYIVSVARKLGCSVFL 479 (506)
T ss_dssp HHHHHHHHHHHHTTTCCCCCSSTTCGGGGGCHHHHHHHHHHCGGGCCTTSCCCSCSHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999986504985223889865210558999998864877440402266788166999999999999986998767
Q ss_pred CCCHHCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 820010478037899999999975128
Q 004589 597 LPEDIMEVNQKMILTLTASIMYWSLQQ 623 (743)
Q Consensus 597 ~peDi~~~d~~~iltyls~~~~~~~~~ 623 (743)
+||||+++|+++||||+++||+++..+
T Consensus 480 ~peDi~~~d~ksi~tyv~~l~~~~~~~ 506 (506)
T 1pxy_A 480 LPEDIVEVNQKMILILTASIMYWSLQR 506 (506)
T ss_dssp CHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred CHHHCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 999955887027899999999987419
No 2
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=1.00 E-value=1 Score=855.54 Aligned_cols=504 Identities=42% Similarity=0.787 Sum_probs=462.6
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC---CCCC
Q ss_conf 1135444323456689999984418998533457999872358987244599999999985998533111467---9898
Q 004589 113 TTTLLHTISESEKASYVAHINSYLGDDPFLKQFLPLDPTTNDLFDLAKDGVLLCKLINIAVPGTIDERAINTK---RVIN 189 (743)
Q Consensus 113 ~~~~~~~i~e~e~~~~~~wiN~~L~~~~~~~~~lpi~~~v~dl~~dl~DGviL~~Lie~l~~~~i~~~~i~~~---~~~~ 189 (743)
+.+..|+|+++|+++|++|||++|++++++++++|+++.+.||++||+||++||+|+|+++|+++++++++++ ++.+
T Consensus 2 ~~~~~~~~~~~q~~~f~~WIN~~L~~~~~~~~~lpi~~~v~dl~~dL~DG~~L~~Lie~l~~~~i~~~~i~~~~~~~~~~ 81 (513)
T 1rt8_A 2 SPEFMHTINEEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLD 81 (513)
T ss_dssp -------CCHHHHHHHHHHHHHHHTTCTTTGGGCSCCTTSTHHHHHTTTSHHHHHHHHHHSTTSSCGGGSCCCC---CCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCC
T ss_conf 98876752199999999999986367854333588898567899996267999999998768975611237765557565
Q ss_pred HHHHHHHHHHHHHHHHHCCC-EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHHHHHCCC
Q ss_conf 26999999999999998097-12004853212570256863366643443221233355731010024770367741589
Q 004589 190 PWERNENHTLCLNSAKAIGC-TVVNIGTQDLVEGRPHLILGLISQIIKIQLLADLNLKKTPQLVELVEDNSDVEELMGLA 268 (743)
Q Consensus 190 ~~~~~eN~~~~L~~~k~~G~-~~~~i~~~div~G~~~~iL~LiwqLi~~~~l~~i~l~~~p~l~~l~~~~e~~~~~~~~s 268 (743)
+++++||++.||++++..|| .+++|+++||+||++++||||+||||++|+++.++++++|++..+.+++++++++...+
T Consensus 82 ~~~~~eNi~~~L~~~k~~g~~~l~~i~~~DI~dg~~~liLgLiW~li~~~~l~~i~~~~~pel~~l~~~~e~~~~~~~~~ 161 (513)
T 1rt8_A 82 NFKCIENNNVVINSAKAMGGISITNIGAGDILEGREHLILGLVWQIIRRGLLGKIDITLHPELYRLLEEDETLDQFLRLP 161 (513)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSSCCHHHHHTTCHHHHHHHHHHHHHHHSSCCC----------------CHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHCCC
T ss_conf 99999999999999998299812786877643577999999999999986421324033878776502677523331278
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 39999999998953229876534687777550889999874389999999799999887899999766216974324765
Q 004589 269 PEKVLLKWMNYHLKKAGYEKPVTNFSSDLKDGKAYTYLLNVLAPEHCNPATLDMKDPTERAKLVLDHAERMDCKRYLSPK 348 (743)
Q Consensus 269 ~e~~LL~Wvn~~L~~~~~~~~V~nFssd~~DG~~l~~Li~~~~P~~~~~~~l~~~~~~~n~~~a~~~a~~lGi~~~l~pe 348 (743)
+++.||+|||.+++.+||.++|+||++||+||++||+|+|++.|+.++++.++.++..+|+++||++|+++|||++++|+
T Consensus 162 ~~~~LL~W~n~~l~~~g~~~~V~nFs~s~~DG~a~~aLl~~~~P~~i~~~~l~~~~~~~n~~~a~~~a~~lgi~~~l~pe 241 (513)
T 1rt8_A 162 PEKILLRWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQLAPELCSRAPLQTTDVLQRAEQVLQNAEKLDCRKYLTPT 241 (513)
T ss_dssp HHHHHHHHHHHHHHHTTCSCCCSCSSGGGTTSHHHHHHHHHHCTTTCCSGGGGCCCHHHHHHHHHHHHHTTTCCCSCCHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 89999999999877359986751530345456999999998786630567798468999999999999975998638999
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 43346855067867566552489985300001010000111243546999999984068765541247546699999999
Q 004589 349 DIVEGSANLNLAFVAQVFHQRSGLTTDSKKISFAEMITDDVQTSREERCFRLWINSLGIATYCNNVFEDVRNGWLLLEVL 428 (743)
Q Consensus 349 Di~~~~~~~~l~yla~L~~~~~~l~~~~~~~~~~~~~~~d~~~~~q~~~f~~WiN~~~~~~~v~~L~~Dl~DG~~L~~ll 428 (743)
||++++++++|+|+++||+.++++.+.... ...+....+...++|+++|++|||+++.++.|+|+++||+||++||+|+
T Consensus 242 Di~~~~~k~il~yva~l~~~~~~~~~~~~~-~~~~~~~~~~e~~~q~k~f~~WiN~~~~~~~v~~l~~DL~DG~~L~~Ll 320 (513)
T 1rt8_A 242 AMVAGNPKLNLAFVAHLFNTHPGLEPLNEE-EKPEIEPFDAEGEREARVFTLWLNSLDVTPSIHDFFNNLRDGLILLQAY 320 (513)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCCCC--------------CHHHHHHHHHHHHHHHTTCSSCCSCHHHHTTTSHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHCCCCCCCCH-HHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 951888999999998887641335754200-0233544221167899999999983488998327999975299999999
Q ss_pred HHHCCCCCCCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 983999766544578999----9725799879999999884100246777753235705789999999998887764331
Q 004589 429 DKVSPGSVDWKQASKPPI----KMPFRKVENCNQVIKIGKQLKFSLVNVAGNDFVQGNKKLILAFLWQLMRFNMLQLLKN 504 (743)
Q Consensus 429 e~l~~~~v~~k~~~~~~~----~~~~~~ieN~~~~l~~lk~~g~~l~~I~~~DIvdG~~k~iL~LlW~l~~~~i~~~~~~ 504 (743)
|++.+++++|++++++|. ++|++++|||+.|++++++.|++++||+++||+||++++||||+|+|||+++.+.+..
T Consensus 321 e~l~~g~v~~~~~~~~p~~~~~~~r~~~~eNv~~al~~~~~~gv~lv~i~~~DIvdg~~~~~LgLlW~li~~~~~~~l~~ 400 (513)
T 1rt8_A 321 DKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKNQGFSLVGIQGADITDGSRTLTLALVWQMMRMNITKTLHS 400 (513)
T ss_dssp HHHSTTCCCGGGSCCCCTTSCCCCHHHHHHHHHHHHHHHHHTTCCCTTCCHHHHHTTCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98678986566514785423332168999999999999997594041046656566870416999999999999999876
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 10257896569467778895772216996323469877888738999986410899431144458999489987699999
Q 004589 505 LRSRSQGKEITDAGILKWANDKVKSTGRTSQMESFKDKSLSNGLFFLELLSSVEPRVVNWNLVTKGESDEEKRLNATYII 584 (743)
Q Consensus 505 ~~~~~~g~~~~~~~LL~W~~~~~~~~~~~~~i~nfsd~s~~dG~af~aLi~~~~P~~i~~~~l~~~~s~~~~~~n~~~a~ 584 (743)
+.. +|+.+++++||+|||+++..+++++.|+||+|+||+||+|||||||+|+|++++|+.+.++.+++++++|+++||
T Consensus 401 l~~--~~~~~~~~~LL~W~~~~~~~~~~~~~i~nF~~~s~~dG~a~~aLi~~~~P~~i~~~~l~~~~~~~~~~~n~~~af 478 (513)
T 1rt8_A 401 LSR--GGKTLSDSDMVAWANSMAAKGGKGSQIRSFRDPSISTGVFVLDVLHGIKSEYVDYNLVTDGSTEELAIQNARLAI 478 (513)
T ss_dssp --------CCCHHHHHHHHHHHHTTTCSSCCCSSTTCGGGGGSHHHHHHHHHHCGGGCCGGGCCCCCSHHHHHHHHHHHH
T ss_pred HCC--CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHH
T ss_conf 414--888589999999999985523898787789715110669999999885878678776066667031999999999
Q ss_pred HHHHHCCCCCCCCCCHHCCCCCHHHHHHHHHHHHH
Q ss_conf 99998399742482001047803789999999997
Q 004589 585 SVARKLGCSIFLLPEDIMEVNQKMILTLTASIMYW 619 (743)
Q Consensus 585 ~~A~~lGi~~ll~peDi~~~d~~~iltyls~~~~~ 619 (743)
++|++||||++++||||+.+++||||||+++||++
T Consensus 479 ~~A~~lGi~~~l~peDi~~~~pksi~tyva~l~~~ 513 (513)
T 1rt8_A 479 SIARKLGAVIFILPEDIVAVRPRLVLHFIGSLMAV 513 (513)
T ss_dssp HHHHHTTCCCCCCHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHCCCCCCCCHHHHCCCCCCCHHHHHHHHHHC
T ss_conf 99998699860789995588854399999999719
No 3
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=1.00 E-value=1 Score=417.75 Aligned_cols=261 Identities=47% Similarity=0.827 Sum_probs=243.9
Q ss_pred CHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 05788742113544432345668999998441899853345799987235898724459999999998599853311146
Q 004589 105 SSSFLKASTTTLLHTISESEKASYVAHINSYLGDDPFLKQFLPLDPTTNDLFDLAKDGVLLCKLINIAVPGTIDERAINT 184 (743)
Q Consensus 105 s~~~lk~~~~~~~~~i~e~e~~~~~~wiN~~L~~~~~~~~~lpi~~~v~dl~~dl~DGviL~~Lie~l~~~~i~~~~i~~ 184 (743)
.++....+..+..|+|+++|+++|++|||++|+++++|++.+|+++.+.||++||+||++||+|+|++.|++++++.+++
T Consensus 6 ~~g~~~~~~~~~~~~~~~~q~~~f~~WiN~~L~~~~~~~~~~~i~~~v~dl~~dL~DGv~L~~Lle~l~~~~v~~~~i~~ 85 (275)
T 1aoa_A 6 LGGTSELSSEGTQHSYSEEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINK 85 (275)
T ss_dssp ---------------CCHHHHHHHHHHHHHHTTTCTTSTTTCSCCTTTTHHHHHGGGSHHHHHHHHHHSTTSSCGGGSCC
T ss_pred CCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 67642300377756648999999999999980457442224889986016999864499999999986689877210377
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHHHH
Q ss_conf 79898269999999999999980971200485321257025686336664344322123335573101002477036774
Q 004589 185 KRVINPWERNENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLILGLISQIIKIQLLADLNLKKTPQLVELVEDNSDVEEL 264 (743)
Q Consensus 185 ~~~~~~~~~~eN~~~~L~~~k~~G~~~~~i~~~div~G~~~~iL~LiwqLi~~~~l~~i~l~~~p~l~~l~~~~e~~~~~ 264 (743)
+ +.++++++||++.||++++..|+.+++|+++||++|++++||||+||||++|++..+++..+|++.++..++++.+++
T Consensus 86 ~-~~~~~~~~eNv~~aL~~~k~~g~~l~~I~~~DIvdg~~~liLgLlw~li~~~~~~~I~~~~~~~l~~ll~~ge~~~~~ 164 (275)
T 1aoa_A 86 K-KLTPFIIQENLNLALNSASAIGCHVVNIGAEDLRAGKPHLVLGLLWQIIKIGLFADIELSRNEALAALLRDGETLEEL 164 (275)
T ss_dssp S-SCCHHHHHHHHHHHHHHHHHTTCCCTTCCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSSCTTCC--------CHHHH
T ss_pred C-CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHH
T ss_conf 8-798899999999999999975972057888888757689999999999997602022413376788763068752444
Q ss_pred HCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC---------CCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 1589399999999989532298765346877775508899998743899---------9999979999988789999976
Q 004589 265 MGLAPEKVLLKWMNYHLKKAGYEKPVTNFSSDLKDGKAYTYLLNVLAPE---------HCNPATLDMKDPTERAKLVLDH 335 (743)
Q Consensus 265 ~~~s~e~~LL~Wvn~~L~~~~~~~~V~nFssd~~DG~~l~~Li~~~~P~---------~~~~~~l~~~~~~~n~~~a~~~ 335 (743)
..+++++.||+|||.+++.+|+.. |+||++||+||++||+|||++.|+ .++++.++.++..+|+++||++
T Consensus 165 ~~~s~~~~LL~W~n~~l~~~g~~~-I~nF~~s~~DG~a~~aLi~~~~P~~~~~~~~~l~~~~~~~~~~~~~~n~~~a~~~ 243 (275)
T 1aoa_A 165 MKLSPEELLLRWANFHLENSGWQK-INNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQ 243 (275)
T ss_dssp HTSCHHHHHHHHHHHHHHHTTCCC-CSCSSTTTTTSHHHHHHHHHHSCCSCSSSCCCCCCCCTTTTCSSHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 206989999999999888649986-0102430652499999999978886543442210366678954899999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 62169743247654334685506786756655
Q 004589 336 AERMDCKRYLSPKDIVEGSANLNLAFVAQVFH 367 (743)
Q Consensus 336 a~~lGi~~~l~peDi~~~~~~~~l~yla~L~~ 367 (743)
|+++|||++++|+||++++++++|+|+++|||
T Consensus 244 A~~lGi~~~l~peDi~~~~~k~i~tyva~Lfn 275 (275)
T 1aoa_A 244 ADKLGCRQFVTPADVVSGNPKLNLAFVANLFN 275 (275)
T ss_dssp HTTTTCCCSCCHHHHHTTCHHHHHHHHHHHHC
T ss_pred HHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHC
T ss_conf 99769987588999289974499999999719
No 4
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=1.00 E-value=1 Score=412.83 Aligned_cols=231 Identities=20% Similarity=0.351 Sum_probs=196.8
Q ss_pred HHCHHHHHHHHHHHHHHHHHHHHCC--CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 0000111243546999999984068--76554124754669999999998399976654457899997257998799999
Q 004589 383 EMITDDVQTSREERCFRLWINSLGI--ATYCNNVFEDVRNGWLLLEVLDKVSPGSVDWKQASKPPIKMPFRKVENCNQVI 460 (743)
Q Consensus 383 ~~~~~d~~~~~q~~~f~~WiN~~~~--~~~v~~L~~Dl~DG~~L~~lle~l~~~~v~~k~~~~~~~~~~~~~ieN~~~~l 460 (743)
++..|.+|+.+|+||||+|||+++. +..|+||++||+||++|++|+|++++++++++...+| ++|+|+++||+.||
T Consensus 7 ~~~~d~~we~iQ~ktFt~WiN~~L~~~~~~V~dL~~Dl~DG~~L~~Lle~ls~~~l~~~~~~~p--~~r~~k~eNv~~al 84 (347)
T 4b7l_A 7 DLAEDAPWKKIQQNTFTRWCNEHLKSVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRP--TFRQMQLENVSVAL 84 (347)
T ss_dssp ------CHHHHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSSC--CSHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCCCHHHCCCC--CCHHHHHHHHHHHH
T ss_conf 0100518999999999999997317389984777988307999999999976980570004895--01999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99884100246777753235705789999999998-8877643311025-789656946777889577221699632346
Q 004589 461 KIGKQLKFSLVNVAGNDFVQGNKKLILAFLWQLMR-FNMLQLLKNLRSR-SQGKEITDAGILKWANDKVKSTGRTSQMES 538 (743)
Q Consensus 461 ~~lk~~g~~l~~I~~~DIvdG~~k~iL~LlW~l~~-~~i~~~~~~~~~~-~~g~~~~~~~LL~W~~~~~~~~~~~~~i~n 538 (743)
+|+++.|++++||+++||+|||+++||||+|+||+ |++...+.+.... ...+...+++||+|||.++. ++.|+|
T Consensus 85 ~~~~~~g~~lv~i~~~DIvdGn~~liLgLiW~li~~~~i~~~~~~~~~~~~~~~~~~k~~LL~W~~~~~~----~~~v~n 160 (347)
T 4b7l_A 85 EFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSISMPVWEDEGDDDAKKQTPKQRLLGWIQNKIP----YLPITN 160 (347)
T ss_dssp HHHHHTTCCCSSCCHHHHHTTCHHHHHHHHHHHHHHHHTTSSCCC-------CCCCHHHHHHHHHHHHCT----TSCCCC
T ss_pred HHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC----CCCCCC
T ss_conf 9998734634787720444388756789999999987541120022331023344699999999876377----866578
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCE-ECCCCCCCCCHHHHHHHHHHHHHHHHH-CCCCCCCCCCHHCC--CCCHHHHHHHH
Q ss_conf 987788873899998641089943-114445899948998769999999998-39974248200104--78037899999
Q 004589 539 FKDKSLSNGLFFLELLSSVEPRVV-NWNLVTKGESDEEKRLNATYIISVARK-LGCSIFLLPEDIME--VNQKMILTLTA 614 (743)
Q Consensus 539 fsd~s~~dG~af~aLi~~~~P~~i-~~~~l~~~~s~~~~~~n~~~a~~~A~~-lGi~~ll~peDi~~--~d~~~iltyls 614 (743)
|+ +||+||+|||||||+|+|+++ +|+.+.+ .++.+|+++||++|++ ||||++|+||||+. ||++|||||++
T Consensus 161 F~-~sw~DG~af~aLi~~~~P~~~~d~~~l~~----~~~~~n~~~Af~~Ae~~lGip~ll~peDi~~~~pDeksimtYvs 235 (347)
T 4b7l_A 161 FN-QNWQDGKALGALVDSCAPGLCPDWESWDP----QKPVDNAREAMQQADDWLGVPQVITPEEIIHPDVDEHSVMTYLS 235 (347)
T ss_dssp SS-GGGTTSHHHHHHHHHHSTTSSTTGGGSCT----TCHHHHHHHHHHHHHHHHCCCCSSCHHHHTCTTCCHHHHHHHHT
T ss_pred CC-CCCCCHHHHHHHHHHHCCCCCCCHHHCCC----CCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHH
T ss_conf 98-88646699999999868765464332696----79999999999999985699823589994779997557999999
Q ss_pred HHHHHHHCCC
Q ss_conf 9999751287
Q 004589 615 SIMYWSLQQQ 624 (743)
Q Consensus 615 ~~~~~~~~~~ 624 (743)
+||+++..+.
T Consensus 236 ~~~~~~~~~~ 245 (347)
T 4b7l_A 236 QFPKAKLKPG 245 (347)
T ss_dssp TGGGCCCCTT
T ss_pred HHHHHCCCCC
T ss_conf 9866236865
No 5
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=1.00 E-value=1 Score=395.95 Aligned_cols=226 Identities=19% Similarity=0.387 Sum_probs=194.8
Q ss_pred HHCHHHHHHHHHHHHHHHHHHHHC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 000011124354699999998406--876554124754669999999998399976654457899997257998799999
Q 004589 383 EMITDDVQTSREERCFRLWINSLG--IATYCNNVFEDVRNGWLLLEVLDKVSPGSVDWKQASKPPIKMPFRKVENCNQVI 460 (743)
Q Consensus 383 ~~~~~d~~~~~q~~~f~~WiN~~~--~~~~v~~L~~Dl~DG~~L~~lle~l~~~~v~~k~~~~~~~~~~~~~ieN~~~~l 460 (743)
+...+..|+.+|+++|++|||+++ .++.|+||++||+||++||+|+|+++|+++ |++++++| .+|+|+++||+.||
T Consensus 37 ~~~~d~~w~~vQkktft~WiN~~L~~~~~~V~dL~~DL~DGv~L~~Lle~Ls~~~l-~~~~~~~p-~~r~~kleNv~~aL 114 (272)
T 3hoc_A 37 DLAEDAPWKKIQQNTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKM-HRKHNQRP-TFRQMQLENVSVAL 114 (272)
T ss_dssp -----CGGGGHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTSCC-SSCCCSSC-CSHHHHHHHHHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCC-CCHHHHHHHHHHHH
T ss_conf 01218009999999999999997124799756699998459999999999758765-32117798-62789998999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCC-CCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9988410024677775323570578999999999-888776433110257896-56946777889577221699632346
Q 004589 461 KIGKQLKFSLVNVAGNDFVQGNKKLILAFLWQLM-RFNMLQLLKNLRSRSQGK-EITDAGILKWANDKVKSTGRTSQMES 538 (743)
Q Consensus 461 ~~lk~~g~~l~~I~~~DIvdG~~k~iL~LlW~l~-~~~i~~~~~~~~~~~~g~-~~~~~~LL~W~~~~~~~~~~~~~i~n 538 (743)
+|++..|++++||+++||+|||+++||||+|+|| +|++..+..+.....+++ ...+++||+|||.++ +++.|+|
T Consensus 115 ~~lk~~gv~lvnI~~~DIvdGn~kliLgLlW~Li~~~~i~~l~~~~e~~~~~~~~s~k~~LL~W~n~~~----~~~~I~n 190 (272)
T 3hoc_A 115 EFLDRESIKLVSIDSKAIVDGNLKLILGLIWTLILHYSISMPMWDEEEDEEAKKQTPKQRLLGWIQNKL----PQLPITN 190 (272)
T ss_dssp HHHHHTTCCCSSCCHHHHHTTCHHHHHHHHHHHHHHHHTTCC------------CCHHHHHHHHHHHHC----TTSCCCC
T ss_pred HHHHHCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHC----CCCCCCC
T ss_conf 999983986444661022148789999999999998745155304421123344678999999999637----9987778
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCE-ECCCCCCCCCHHHHHHHHHHHHHHHHH-CCCCCCCCCCHHCC--CCCHHHHHHHH
Q ss_conf 987788873899998641089943-114445899948998769999999998-39974248200104--78037899999
Q 004589 539 FKDKSLSNGLFFLELLSSVEPRVV-NWNLVTKGESDEEKRLNATYIISVARK-LGCSIFLLPEDIME--VNQKMILTLTA 614 (743)
Q Consensus 539 fsd~s~~dG~af~aLi~~~~P~~i-~~~~l~~~~s~~~~~~n~~~a~~~A~~-lGi~~ll~peDi~~--~d~~~iltyls 614 (743)
|+ +||+||+|||||||+++|+++ +|+.+.+ .++.+|+++||++|++ ||||++++||||+. ||++|||||++
T Consensus 191 Fs-~sw~DG~af~aLi~~~~P~li~d~~~l~~----~~~~~n~~~Af~~Ae~~lGi~~ll~peDiv~~~pD~ksimtYvs 265 (272)
T 3hoc_A 191 FS-RDWQSGRALGALVDSCAPGLCPDWDSWDA----SKPVTNAREAMQQADDWLGIPQVITPEEIVDPNVDKHSVMTYLS 265 (272)
T ss_dssp SS-GGGTTSHHHHHHHHHHSTTSSTTGGGSCT----TCHHHHHHHHHHHHHHHHCCCCSSCHHHHTCTTCCHHHHHHHHT
T ss_pred HH-HCCCCHHHHHHHHHHHCCCCCCCHHHCCC----CCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHH
T ss_conf 25-30223389999998768461366242584----68999999999999980799864779995357997488997998
Q ss_pred HHHHH
Q ss_conf 99997
Q 004589 615 SIMYW 619 (743)
Q Consensus 615 ~~~~~ 619 (743)
+||+.
T Consensus 266 ~~~~a 270 (272)
T 3hoc_A 266 QFPKA 270 (272)
T ss_dssp TCC--
T ss_pred HHHCC
T ss_conf 76306
No 6
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=392.14 Aligned_cols=223 Identities=24% Similarity=0.434 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCC--CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 111243546999999984068--765541247546699999999983999766544578999972579987999999988
Q 004589 387 DDVQTSREERCFRLWINSLGI--ATYCNNVFEDVRNGWLLLEVLDKVSPGSVDWKQASKPPIKMPFRKVENCNQVIKIGK 464 (743)
Q Consensus 387 ~d~~~~~q~~~f~~WiN~~~~--~~~v~~L~~Dl~DG~~L~~lle~l~~~~v~~k~~~~~~~~~~~~~ieN~~~~l~~lk 464 (743)
.++|+.+|+++|++|||+++. .+.|+||++||+||++||+|+|+++|+++++. ++++|+|++|||+.||+|++
T Consensus 67 ~~e~~~vQkktft~WINs~L~~~~~~V~dL~~DL~DGvvL~~Lle~L~~~~l~~~-----~~~~r~~kleNvn~aL~~lk 141 (296)
T 3f7p_A 67 ADERDRVQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPRE-----KGRMRFHKLQNVQIALDYLR 141 (296)
T ss_dssp CCHHHHHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCCCCCCC-----CCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC-----CCCCHHHHHHHHHHHHHHHH
T ss_conf 2068899999999999997164799755499997069999999998468766566-----78673265432899999999
Q ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCCCC-HHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 4100246777753235705789999999998-88776433110257896569-467778895772216996323469877
Q 004589 465 QLKFSLVNVAGNDFVQGNKKLILAFLWQLMR-FNMLQLLKNLRSRSQGKEIT-DAGILKWANDKVKSTGRTSQMESFKDK 542 (743)
Q Consensus 465 ~~g~~l~~I~~~DIvdG~~k~iL~LlW~l~~-~~i~~~~~~~~~~~~g~~~~-~~~LL~W~~~~~~~~~~~~~i~nfsd~ 542 (743)
..|++++||+++||+|||+++||||+|+||+ |++..+..+ ..++.++ +++||+|||.++.+| +++.|+||+ +
T Consensus 142 ~~gv~lv~I~~~DIvdGn~kliLgLlW~Li~~~~i~~i~~~----g~~~~~s~k~~LL~W~n~~~~~y-~~v~I~nFs-~ 215 (296)
T 3f7p_A 142 HRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVS----GQSEDMTAKEKLLLWSQRMVEGY-QGLRCDNFT-S 215 (296)
T ss_dssp HTTCCCTTCCHHHHHTTCHHHHHHHHHHHHHHHTTTTCCCS----SCCTTSCHHHHHHHHHHHHTTTS-TTCCCCCSS-G
T ss_pred HHCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCEEEEECC----CCCCCCCHHHHHHHHHHHHHCCC-CCCCCCCCC-C
T ss_conf 70855357772654346167789899774212432223205----77565788999999999984579-987278966-5
Q ss_pred CCCCHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHH-HCCCCCCCCCCHHCC--CCCHHHHHHHHHHHHH
Q ss_conf 8887389999864108994311444589994899876999999999-839974248200104--7803789999999997
Q 004589 543 SLSNGLFFLELLSSVEPRVVNWNLVTKGESDEEKRLNATYIISVAR-KLGCSIFLLPEDIME--VNQKMILTLTASIMYW 619 (743)
Q Consensus 543 s~~dG~af~aLi~~~~P~~i~~~~l~~~~s~~~~~~n~~~a~~~A~-~lGi~~ll~peDi~~--~d~~~iltyls~~~~~ 619 (743)
||+||+|||||||+|+|+++||+.+.+. +..+|+++||++|+ +||||++++||||+. ||+++||||+++||+.
T Consensus 216 sw~DG~af~aLI~~~~P~lid~~~l~~~----~~~~N~~~Af~~Ae~~LGi~~ll~pEDi~~~~pDeksimtyvs~ly~~ 291 (296)
T 3f7p_A 216 SWRDGRLFNAIIHRHKPLLIDMNKVYRQ----TNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDA 291 (296)
T ss_dssp GGTTSHHHHHHHHHHCGGGCCHHHHTTS----CHHHHHHHHHHHHHHHHCCCCCCCHHHHSSSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHCCCCCCHHHCCCC----CHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 5554279999999878686578773852----179999999999998579986578778267787588999999999987
Q ss_pred HHCCC
Q ss_conf 51287
Q 004589 620 SLQQQ 624 (743)
Q Consensus 620 ~~~~~ 624 (743)
|..-|
T Consensus 292 fp~lp 296 (296)
T 3f7p_A 292 MPRVP 296 (296)
T ss_dssp CC---
T ss_pred CCCCC
T ss_conf 76897
No 7
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=1.00 E-value=1 Score=389.87 Aligned_cols=256 Identities=21% Similarity=0.327 Sum_probs=213.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 44432345668999998441899853345799987235898724459999999998599853311146798982699999
Q 004589 117 LHTISESEKASYVAHINSYLGDDPFLKQFLPLDPTTNDLFDLAKDGVLLCKLINIAVPGTIDERAINTKRVINPWERNEN 196 (743)
Q Consensus 117 ~~~i~e~e~~~~~~wiN~~L~~~~~~~~~lpi~~~v~dl~~dl~DGviL~~Lie~l~~~~i~~~~i~~~~~~~~~~~~eN 196 (743)
...|+..|+++|++|||++|++.+ +.|+||++||+||++||+|+|+++|++++. +++ +.+++++++|
T Consensus 2 ~~~~~~~q~~~f~~Win~~L~~~~---------~~v~~l~~dl~DG~~L~~l~e~l~~~~~~~--~~~--~~~~~~~~eN 68 (863)
T 1sjj_A 2 DPAWEKQQRKTFTAWCNSHLRKAG---------TQIENIEEDFRDGLKLMLLLEVISGERLAK--PER--GKMRVHKISN 68 (863)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHC---------SCCCCCSSTTSSCHHHHHHHHHTSCCCCCC--SCC--CSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCC---------CCCCCHHHHHCCHHHHHHHHHHHCCCCEEC--CCC--CCCHHHHHHH
T ss_conf 727999999999999999726379---------986578988257899999999748880107--789--8649999999
Q ss_pred HHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHHHHHCCCHHHHHHHH
Q ss_conf 99999999980971200485321257025686336664344322123335573101002477036774158939999999
Q 004589 197 HTLCLNSAKAIGCTVVNIGTQDLVEGRPHLILGLISQIIKIQLLADLNLKKTPQLVELVEDNSDVEELMGLAPEKVLLKW 276 (743)
Q Consensus 197 ~~~~L~~~k~~G~~~~~i~~~div~G~~~~iL~LiwqLi~~~~l~~i~l~~~p~l~~l~~~~e~~~~~~~~s~e~~LL~W 276 (743)
++.||++++..|+.+++|+++||++|++++||||+|+||++|.+..+++. .+++++.||+|
T Consensus 69 ~~~~l~~~~~~g~~~~~i~~~di~~g~~~~~l~l~w~l~~~~~~~~~~~~-------------------~~~~~~~ll~W 129 (863)
T 1sjj_A 69 VNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVE-------------------ETSAKEGLLLW 129 (863)
T ss_dssp HHHHHHHHHHTTCCCTTCCSHHHHTTCHHHHHHHHHHHHSCCCCCCCCCC-------------------CCCSTTTTHHH
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHH-------------------CCCHHHHHHHH
T ss_conf 99999999985986689984776668889898999999999731132111-------------------00237799999
Q ss_pred HHHHHHHCCCC-CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCCCCCCCC-
Q ss_conf 99895322987-653468777755088999987438999999979999988789999976621-697432476543346-
Q 004589 277 MNYHLKKAGYE-KPVTNFSSDLKDGKAYTYLLNVLAPEHCNPATLDMKDPTERAKLVLDHAER-MDCKRYLSPKDIVEG- 353 (743)
Q Consensus 277 vn~~L~~~~~~-~~V~nFssd~~DG~~l~~Li~~~~P~~~~~~~l~~~~~~~n~~~a~~~a~~-lGi~~~l~peDi~~~- 353 (743)
||.++. +|. ..|+||++||+||++||+|||+|.|+.++++.+...++.+|+++||++|++ +|||++++|+||+++
T Consensus 130 ~~~~~~--~~~~~~v~nf~~s~~dg~~~~~li~~~~p~~~~~~~~~~~~~~~n~~~a~~~a~~~lg~~~~l~~ed~~~~~ 207 (863)
T 1sjj_A 130 YQRKTA--PYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTA 207 (863)
T ss_dssp HHHHHT--TSTTCCCCSSSGGGTTSHHHHHHHHTTCCSSSCSGGGGSCCCGGGCTHHHHHHHHHHCCCCSCCHHHHTTCS
T ss_pred HHHHCC--CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCC
T ss_conf 998664--789998889854431389999999984888757341797899999999999999838998736899974778
Q ss_pred CCC--CHHHHHHHHHHHCCCCCCCC---CCHHH-HHHC--HHHHHHHHHH--HHHHHHHHHHC
Q ss_conf 855--06786756655248998530---00010-1000--0111243546--99999998406
Q 004589 354 SAN--LNLAFVAQVFHQRSGLTTDS---KKISF-AEMI--TDDVQTSREE--RCFRLWINSLG 406 (743)
Q Consensus 354 ~~~--~~l~yla~L~~~~~~l~~~~---~~~~~-~~~~--~~d~~~~~q~--~~f~~WiN~~~ 406 (743)
.|| ++|+||++||+.|+++.... .++.- ...+ .+..++.-+. +.+..||+...
T Consensus 208 ~pd~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~y~~~~~el~~Wi~~~~ 270 (863)
T 1sjj_A 208 RPDEKAIMTYVSSFYHAFSGAQKAETAANRICKVLAVNQENEQLMEDYEKLASDLLEWIRRTI 270 (863)
T ss_dssp SCCHHHHHHHHHHTTTTTCCCSCSTTCCTTCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 972989999999999983266666678889999873012169999999999888999899999
No 8
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=1.00 E-value=1 Score=383.12 Aligned_cols=225 Identities=24% Similarity=0.397 Sum_probs=197.2
Q ss_pred HCHHHHHHHHHHHHHHHHHHHHCC--CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 000111243546999999984068--765541247546699999999983999766544578999972579987999999
Q 004589 384 MITDDVQTSREERCFRLWINSLGI--ATYCNNVFEDVRNGWLLLEVLDKVSPGSVDWKQASKPPIKMPFRKVENCNQVIK 461 (743)
Q Consensus 384 ~~~~d~~~~~q~~~f~~WiN~~~~--~~~v~~L~~Dl~DG~~L~~lle~l~~~~v~~k~~~~~~~~~~~~~ieN~~~~l~ 461 (743)
...++.|+.+|+++|++|||+++. ...++|+++||+||++||+|+|+++|++++. .+++ ++|+++++||+.+++
T Consensus 18 ~~~~~~~~~~q~~~f~~WiN~~L~~~~~~v~~l~~dl~DGv~L~~Lle~l~~~~v~k--~~~~--~~~~~~~eNi~~aL~ 93 (254)
T 1wku_A 18 LLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPR--PDKG--KMRFHKIANVNKALD 93 (254)
T ss_dssp -----CHHHHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCSCCCC--CCSC--CSHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCCC--CCCC--CCHHHHHHHHHHHHH
T ss_conf 554232259999999999999705369985689998067999999999857677788--7788--418999996999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 98841002467777532357057899999999988-87764331102578965694677788957722169963234698
Q 004589 462 IGKQLKFSLVNVAGNDFVQGNKKLILAFLWQLMRF-NMLQLLKNLRSRSQGKEITDAGILKWANDKVKSTGRTSQMESFK 540 (743)
Q Consensus 462 ~lk~~g~~l~~I~~~DIvdG~~k~iL~LlW~l~~~-~i~~~~~~~~~~~~g~~~~~~~LL~W~~~~~~~~~~~~~i~nfs 540 (743)
|++..|++++||+++||+||+.++||||+|+||++ ++..+.. ++...+++||+|||.++.+| +++.|+||+
T Consensus 94 ~~k~~gv~lv~I~~~DIvdG~~kliLgLlW~li~~~~i~~i~~-------~~~~~~~~LL~W~~~~~~~y-~~v~v~nFs 165 (254)
T 1wku_A 94 FIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISV-------EETSAKEGLLLWCQRKTAPY-RNVNVQNFH 165 (254)
T ss_dssp HHHTTTCCCCSCCHHHHHHCCHHHHHHHHHHHHHHHHTTTCEE-------TTEEHHHHHHHHHHHHHTTC-TTCCCCSSS
T ss_pred HHHHCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCC-------CCCCHHHHHHHHHHHHCCCC-CCCCCCCCC
T ss_conf 9998499716877988865626778999999999872134562-------31467999999999972589-998477875
Q ss_pred CCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHH-CCCCCCCCCCHHCC---CCCHHHHHHHHHH
Q ss_conf 7788873899998641089943114445899948998769999999998-39974248200104---7803789999999
Q 004589 541 DKSLSNGLFFLELLSSVEPRVVNWNLVTKGESDEEKRLNATYIISVARK-LGCSIFLLPEDIME---VNQKMILTLTASI 616 (743)
Q Consensus 541 d~s~~dG~af~aLi~~~~P~~i~~~~l~~~~s~~~~~~n~~~a~~~A~~-lGi~~ll~peDi~~---~d~~~iltyls~~ 616 (743)
+||+||+|||||||+|+|++++|+.+.+ .++.+|+++||++|++ ||||++++|+||++ ||++++|||+++|
T Consensus 166 -~s~~DG~a~~aLi~~~~P~~id~~~l~~----~~~~~n~~~a~~~A~~~lGi~~~l~peDiv~~~~pD~k~imtyva~l 240 (254)
T 1wku_A 166 -TSWKDGLALCALIHRHRPDLIDYAKLRK----DDPIGNLNTAFEVAEKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCF 240 (254)
T ss_dssp -GGGTTSHHHHHHHHHHCTTSCCGGGCCT----TCHHHHHHHHHHHHHHHSCCCCCSCHHHHHHSSSCCHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHCCCCCCCCCCCC----CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCHHHHHHHHHHH
T ss_conf -3235099999999987889634212685----79999999999999997699885789998646797599999999999
Q ss_pred HHHHHCCCC
Q ss_conf 997512876
Q 004589 617 MYWSLQQQV 625 (743)
Q Consensus 617 ~~~~~~~~~ 625 (743)
|++|.....
T Consensus 241 ~~~~~~~~~ 249 (254)
T 1wku_A 241 YHAFAGAEQ 249 (254)
T ss_dssp HHHHHHC--
T ss_pred HHHHHCCCH
T ss_conf 998312656
No 9
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=1.00 E-value=1 Score=379.10 Aligned_cols=226 Identities=19% Similarity=0.363 Sum_probs=192.8
Q ss_pred HHCHHHHHHHHHHHHHHHHHHHHC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 000011124354699999998406--876554124754669999999998399976654457899997257998799999
Q 004589 383 EMITDDVQTSREERCFRLWINSLG--IATYCNNVFEDVRNGWLLLEVLDKVSPGSVDWKQASKPPIKMPFRKVENCNQVI 460 (743)
Q Consensus 383 ~~~~~d~~~~~q~~~f~~WiN~~~--~~~~v~~L~~Dl~DG~~L~~lle~l~~~~v~~k~~~~~~~~~~~~~ieN~~~~l 460 (743)
+...+..|+.+|+++|++|||+++ ..+.|+||++||+||++||+|+|+++|+++. ++++++| .+++|++|||+.|+
T Consensus 10 ~~~~~~~~~~~q~~~f~~WiN~~L~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~~~-~~~n~~~-~~~~~~~eNv~~aL 87 (245)
T 2wa7_A 10 DLAEDAPWKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMY-RKYHQRP-TFRQMQLENVSVAL 87 (245)
T ss_dssp -----CGGGGHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCCCS-SCCCSSC-CSHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCC-HHCCCCC-CCHHHHHHHHHHHH
T ss_conf 231163299999999999999834435997548898802399999999997689774-1007899-86899999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99884100246777753235705789999999998-8877643311025789656-946777889577221699632346
Q 004589 461 KIGKQLKFSLVNVAGNDFVQGNKKLILAFLWQLMR-FNMLQLLKNLRSRSQGKEI-TDAGILKWANDKVKSTGRTSQMES 538 (743)
Q Consensus 461 ~~lk~~g~~l~~I~~~DIvdG~~k~iL~LlW~l~~-~~i~~~~~~~~~~~~g~~~-~~~~LL~W~~~~~~~~~~~~~i~n 538 (743)
+|++..|++++||+++||+||++++||||+|+||+ |++..++.+.....+++.. .++.||+|||.++. ++.|+|
T Consensus 88 ~~~k~~g~~lv~I~~~DIvdG~~kliLgLlW~li~~~~i~~~~~~~~~~~~~~~~~~~~~LL~W~~~~~~----~~~v~n 163 (245)
T 2wa7_A 88 EFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSISMPVWEDEGDDDAKKQTPKQRLLGWIQNKIP----YLPITN 163 (245)
T ss_dssp HHHHHTTCCCCSCCHHHHHTTCHHHHHHHHHHHHHHHHTTSSCCSSCC----CCCCHHHHHHHHHHHHST----TSCCCC
T ss_pred HHHHHCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC----CCCCCC
T ss_conf 9999829820688888744788999999999999997024333343231132336679999999998578----998888
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCE-ECCCCCCCCCHHHHHHHHHHHHHHHHH-CCCCCCCCCCHHCC--CCCHHHHHHHH
Q ss_conf 987788873899998641089943-114445899948998769999999998-39974248200104--78037899999
Q 004589 539 FKDKSLSNGLFFLELLSSVEPRVV-NWNLVTKGESDEEKRLNATYIISVARK-LGCSIFLLPEDIME--VNQKMILTLTA 614 (743)
Q Consensus 539 fsd~s~~dG~af~aLi~~~~P~~i-~~~~l~~~~s~~~~~~n~~~a~~~A~~-lGi~~ll~peDi~~--~d~~~iltyls 614 (743)
|+ +||+||+|||+|||+|+|+++ +|+.+.+ .++.+|+++||++|++ ||||++++||||+. ||++|||||++
T Consensus 164 Fs-~s~~dG~a~~aLi~~~~P~~i~~~~~l~~----~~~~~n~~~a~~~A~~~lGi~~~l~peDi~~~~~d~ksi~tyvs 238 (245)
T 2wa7_A 164 FN-QNWQDGKALGALVDSCAPGLCPDWESWDP----QKPVDNAREAVQQADDWLGVPQVITPEEIIHPDVDEHSVMTYLS 238 (245)
T ss_dssp SS-GGGTTSHHHHHHHHHHSTTSSTTGGGSCT----TCHHHHHHHHHHHHHHHSCCCCSSCHHHHTCTTCCHHHHHHHHT
T ss_pred CC-CCCHHHHHHHHHHHHHCCCCCCCCCCCCC----CCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHH
T ss_conf 74-54231399999999878662010100571----12999999999999984799861789996068983899999999
Q ss_pred HHHHH
Q ss_conf 99997
Q 004589 615 SIMYW 619 (743)
Q Consensus 615 ~~~~~ 619 (743)
+||+.
T Consensus 239 ~~~~~ 243 (245)
T 2wa7_A 239 QFPKA 243 (245)
T ss_dssp HHHHC
T ss_pred HHHCC
T ss_conf 98515
No 10
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=1.00 E-value=1 Score=375.77 Aligned_cols=227 Identities=24% Similarity=0.427 Sum_probs=196.6
Q ss_pred HCHHHHHHHHHHHHHHHHHHHHCCC-------CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 0001112435469999999840687-------655412475466999999999839997665445789999725799879
Q 004589 384 MITDDVQTSREERCFRLWINSLGIA-------TYCNNVFEDVRNGWLLLEVLDKVSPGSVDWKQASKPPIKMPFRKVENC 456 (743)
Q Consensus 384 ~~~~d~~~~~q~~~f~~WiN~~~~~-------~~v~~L~~Dl~DG~~L~~lle~l~~~~v~~k~~~~~~~~~~~~~ieN~ 456 (743)
.+..++|+.+|+++|++|||+++.. ..++|+++||+||++||+|+|+++|++++. .++++++++++||
T Consensus 3 ~~~~~e~~~~q~~~f~~WiN~~L~~~~~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~~-----~~~~~~~~~~eNv 77 (245)
T 1sh5_A 3 HMEFDERDRVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR-----EKGRMRFHKLQNV 77 (245)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHTTCSSGGGCCCCSCTTTTTTTSHHHHHHHHHHHCCCCCC-----CCCCSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCCC-----CCCCCHHHHHHHH
T ss_conf 77521579999999999999863435566678876653766157999999999966865568-----8885268999739
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCCCC-HHHHHHHHHHHHHCCCCCC
Q ss_conf 999999884100246777753235705789999999998-88776433110257896569-4677788957722169963
Q 004589 457 NQVIKIGKQLKFSLVNVAGNDFVQGNKKLILAFLWQLMR-FNMLQLLKNLRSRSQGKEIT-DAGILKWANDKVKSTGRTS 534 (743)
Q Consensus 457 ~~~l~~lk~~g~~l~~I~~~DIvdG~~k~iL~LlW~l~~-~~i~~~~~~~~~~~~g~~~~-~~~LL~W~~~~~~~~~~~~ 534 (743)
+.|++++++.|++++||+++||+||++|+||||+|+||+ |++..+... ..++.++ +++||+|||.++.+| +++
T Consensus 78 ~~aL~~~k~~g~~l~~I~~~DIvdg~~k~iLgLlw~li~~~~i~~i~~~----g~~~~~~~~~~LL~W~~~~~~~~-~~~ 152 (245)
T 1sh5_A 78 QIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVS----GQSEDMTAKEKLLLWSQRMVEGY-QGL 152 (245)
T ss_dssp HHHHHHHHHTTCCCCSCCHHHHHTTCHHHHHHHHHHHHHHHTTTTCCCT----TCCSSCCHHHHHHHHHHHHTTTS-TTC
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCC----CCCCCCCHHHHHHHHHHHHHCCC-CCC
T ss_conf 9999999983996167886762324588999999999986322322223----54345788999999999983258-996
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHH-CCCCCCCCCCHHC--CCCCHHHHH
Q ss_conf 2346987788873899998641089943114445899948998769999999998-3997424820010--478037899
Q 004589 535 QMESFKDKSLSNGLFFLELLSSVEPRVVNWNLVTKGESDEEKRLNATYIISVARK-LGCSIFLLPEDIM--EVNQKMILT 611 (743)
Q Consensus 535 ~i~nfsd~s~~dG~af~aLi~~~~P~~i~~~~l~~~~s~~~~~~n~~~a~~~A~~-lGi~~ll~peDi~--~~d~~~ilt 611 (743)
.|+||+ +||+||+|||+|||+|+|++++|+.+.+ .+..+|+++||++|++ ||||++++||||+ .||++++||
T Consensus 153 ~v~nF~-~s~~DG~a~~aLi~~~~P~~i~~~~l~~----~~~~~n~~~a~~~a~~~lGi~~~l~peDi~~~~pd~k~i~t 227 (245)
T 1sh5_A 153 RCDNFT-TSWRDGRLFNAIIHRHKPMLIDMNKVYR----QTNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIIT 227 (245)
T ss_dssp CCCCSS-GGGTTSHHHHHHHHTTCTTTCCHHHHHH----SCHHHHHHHHHHHHHHHHCCCCCCCHHHHSSSSCCHHHHHH
T ss_pred CCCCCC-CCCCCHHHHHHHHHHHCCCCCCHHHCCC----CCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCHHHHHH
T ss_conf 127864-3432269999999987889778887166----88899999999999984799863799993467983789999
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 99999997512876
Q 004589 612 LTASIMYWSLQQQV 625 (743)
Q Consensus 612 yls~~~~~~~~~~~ 625 (743)
|+++||++|.+.++
T Consensus 228 yva~l~~~~~~~~~ 241 (245)
T 1sh5_A 228 YVSSLYDAMPRVPG 241 (245)
T ss_dssp HHHHHHHHCC----
T ss_pred HHHHHHHHCCCCCC
T ss_conf 99999998378997
Done!