BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004590
(743 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1D0N|A Chain A, The Crystal Structure Of Calcium-Free Equine Plasma
Gelsolin.
pdb|1D0N|B Chain B, The Crystal Structure Of Calcium-Free Equine Plasma
Gelsolin
Length = 729
Score = 328 bits (840), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 218/739 (29%), Positives = 362/739 (48%), Gaps = 67/739 (9%)
Query: 12 FEGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHYWLGN 71
F AGK+ GL+IW +E LV VP + +G F+TG AYVIL T L++G Q+D+HYWLGN
Sbjct: 6 FLKAGKEPGLQIWRVEKFDLVPVPPNLYGDFFTGDAYVILKTVQLRNGILQYDLHYWLGN 65
Query: 72 DVNEEDSTLVSDKALELDAALGSCTVQYREVQGQETEKFLSYFRPCIIPLDGKYSLRSGK 131
+ ++++S + ++LD L VQ+REVQG E+ FL YF+ + KY + G
Sbjct: 66 ECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGL-----KYK-KGGV 119
Query: 132 SNG-------ETYKISMLTCKGDHVVRVKEVPFSRSSLNHNDVFIVDTASKIFLFSGCNS 184
++G E +L KG VVR EVP S S N+ D FI+D + I+ + G S
Sbjct: 120 ASGFKHVVPNEVVVQRLLQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIYQWCGSKS 179
Query: 185 SIQERAKALEVVQYIKEDKHGGKCGVATVEDGKFVGDSDVGEFWSLFGGYAPIPRDSPSA 244
+ ER KA +V + I++++ G+ V+ E+G ++ + G +P +
Sbjct: 180 NRFERLKATQVSKGIRDNERSGRAQVSVFEEG-----AEPEAMLQVLGPKPTLPEATEDT 234
Query: 245 FQQQPDTPSTTFFWINLQGKLCQIAA-----NSLNKDMLEKDKCYMLDCVNE--VFVWTG 297
++ + G + + N + L + C++LD + +FVW G
Sbjct: 235 VKEDAANRKLAKLYKVSNGAGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVWKG 294
Query: 298 RNTSITERRISISASEDFLRNQGRTTGTHLTFLTEGLETTVFRSYFDSWPQIAEPKLYDE 357
+ ++ ER+ ++ + DF+ T ++ L EG ET +FR +F +W +P D+
Sbjct: 295 KQANMEERKAALKTASDFISKMDYPKQTQVSVLPEGGETPLFRQFFKNW---RDP---DQ 348
Query: 358 GREKVAAIFKQQGHDVKELPEEDFEPYVNCR------------GILKVWRVNGDELSLLP 405
A V+ +P + + + G ++WRV G +
Sbjct: 349 TEGLGLAYLSSHIAHVERVPFDAATLHTSTAMAAQHGMDDDGTGQKQIWRVEGSNKVPVD 408
Query: 406 AAEQMKLFSGDCYIVKYTYPGNGRDENVIYAWFGHESMTEDRAAAISHMSAIVDST-RGE 464
A + + GD YI+ Y Y R +IY W G +S T+D AA + ++A +D G
Sbjct: 409 PATYGQFYGGDSYIILYNYRHGSRQGQIIYNWQGAQS-TQDEVAASAILTAQLDEELGGT 467
Query: 465 AVMAQVHQDMEPVQFFLIF--QSLIVFKGGLSTQYKKFIVEEGIVDETYDEKKMALFCIQ 522
V ++V Q EP +F + +IV+KGG S + + LF ++
Sbjct: 468 PVQSRVVQGKEPAHLMSLFGGKPMIVYKGGTSREGGQTA-----------PASTRLFQVR 516
Query: 523 GTSPCNMQAFQVDRVSTCLNSSYCYILQNGASVFTWIGNLSSSRDHDLLDRMVELINPTW 582
+S +A ++ + LNS+ ++L+ ++ + W+G +S + ++ ++
Sbjct: 517 ASSSGATRAVEIIPKAGALNSNDAFVLKTPSAAYLWVGAGASEAEKTGAQELLRVLRA-- 574
Query: 583 QPISVREGSEPEVFWNALGGKSEY---PREKEIKGFIEDPHLFTCTLTEGDLKVKEIYN- 638
QP+ V EGSEP+ FW ALGGK+ Y PR K+ K P LF C+ G ++E+
Sbjct: 575 QPVQVAEGSEPDSFWEALGGKATYRTSPRLKDKKMDAHPPRLFACSNKIGRFVIEEVPGE 634
Query: 639 FTQDDLTTEDILVLDCCREIYVWIGCHSDLNSKQQALNIGQKFLETDILVEGLSLETPIY 698
F Q+DL T+D+++LD +++VW+G S K +AL +++++TD TPI
Sbjct: 635 FMQEDLATDDVMLLDTWDQVFVWVGKDSQDEEKTEALTSAKRYIDTDPAHR--DRRTPIT 692
Query: 699 VVTEGHEPPFFTCFF-AWD 716
VV +G EPP F +F WD
Sbjct: 693 VVKQGFEPPSFVGWFLGWD 711
>pdb|2FGH|A Chain A, Atp Bound Gelsolin
pdb|2FGH|B Chain B, Atp Bound Gelsolin
Length = 731
Score = 328 bits (840), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 218/739 (29%), Positives = 362/739 (48%), Gaps = 67/739 (9%)
Query: 12 FEGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHYWLGN 71
F AGK+ GL+IW +E LV VP + +G F+TG AYVIL T L++G Q+D+HYWLGN
Sbjct: 8 FLKAGKEPGLQIWRVEKFDLVPVPPNLYGDFFTGDAYVILKTVQLRNGILQYDLHYWLGN 67
Query: 72 DVNEEDSTLVSDKALELDAALGSCTVQYREVQGQETEKFLSYFRPCIIPLDGKYSLRSGK 131
+ ++++S + ++LD L VQ+REVQG E+ FL YF+ + KY + G
Sbjct: 68 ECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGL-----KYK-KGGV 121
Query: 132 SNG-------ETYKISMLTCKGDHVVRVKEVPFSRSSLNHNDVFIVDTASKIFLFSGCNS 184
++G E +L KG VVR EVP S S N+ D FI+D + I+ + G S
Sbjct: 122 ASGFKHVVPNEVVVQRLLQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIYQWCGSKS 181
Query: 185 SIQERAKALEVVQYIKEDKHGGKCGVATVEDGKFVGDSDVGEFWSLFGGYAPIPRDSPSA 244
+ ER KA +V + I++++ G+ V+ E+G ++ + G +P +
Sbjct: 182 NRFERLKATQVSKGIRDNERSGRAQVSVFEEG-----AEPEAMLQVLGPKPTLPEATEDT 236
Query: 245 FQQQPDTPSTTFFWINLQGKLCQIAA-----NSLNKDMLEKDKCYMLDCVNE--VFVWTG 297
++ + G + + N + L + C++LD + +FVW G
Sbjct: 237 VKEDAANRKLAKLYKVSNGAGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVWKG 296
Query: 298 RNTSITERRISISASEDFLRNQGRTTGTHLTFLTEGLETTVFRSYFDSWPQIAEPKLYDE 357
+ ++ ER+ ++ + DF+ T ++ L EG ET +FR +F +W +P D+
Sbjct: 297 KQANMEERKAALKTASDFISKMDYPKQTQVSVLPEGGETPLFRQFFKNW---RDP---DQ 350
Query: 358 GREKVAAIFKQQGHDVKELPEEDFEPYVNCR------------GILKVWRVNGDELSLLP 405
A V+ +P + + + G ++WRV G +
Sbjct: 351 TEGLGLAYLSSHIAHVERVPFDAATLHTSTAMAAQHGMDDDGTGQKQIWRVEGSNKVPVD 410
Query: 406 AAEQMKLFSGDCYIVKYTYPGNGRDENVIYAWFGHESMTEDRAAAISHMSAIVDST-RGE 464
A + + GD YI+ Y Y R +IY W G +S T+D AA + ++A +D G
Sbjct: 411 PATYGQFYGGDSYIILYNYRHGSRQGQIIYNWQGAQS-TQDEVAASAILTAQLDEELGGT 469
Query: 465 AVMAQVHQDMEPVQFFLIF--QSLIVFKGGLSTQYKKFIVEEGIVDETYDEKKMALFCIQ 522
V ++V Q EP +F + +IV+KGG S + + LF ++
Sbjct: 470 PVQSRVVQGKEPAHLMSLFGGKPMIVYKGGTSREGGQTA-----------PASTRLFQVR 518
Query: 523 GTSPCNMQAFQVDRVSTCLNSSYCYILQNGASVFTWIGNLSSSRDHDLLDRMVELINPTW 582
+S +A ++ + LNS+ ++L+ ++ + W+G +S + ++ ++
Sbjct: 519 ASSSGATRAVEIIPKAGALNSNDAFVLKTPSAAYLWVGAGASEAEKTGAQELLRVLRA-- 576
Query: 583 QPISVREGSEPEVFWNALGGKSEY---PREKEIKGFIEDPHLFTCTLTEGDLKVKEIYN- 638
QP+ V EGSEP+ FW ALGGK+ Y PR K+ K P LF C+ G ++E+
Sbjct: 577 QPVQVAEGSEPDSFWEALGGKATYRTSPRLKDKKMDAHPPRLFACSNKIGRFVIEEVPGE 636
Query: 639 FTQDDLTTEDILVLDCCREIYVWIGCHSDLNSKQQALNIGQKFLETDILVEGLSLETPIY 698
F Q+DL T+D+++LD +++VW+G S K +AL +++++TD TPI
Sbjct: 637 FMQEDLATDDVMLLDTWDQVFVWVGKDSQDEEKTEALTSAKRYIDTDPAHR--DRRTPIT 694
Query: 699 VVTEGHEPPFFTCFF-AWD 716
VV +G EPP F +F WD
Sbjct: 695 VVKQGFEPPSFVGWFLGWD 713
>pdb|3FFN|A Chain A, Crystal Structure Of Calcium-Free Human Gelsolin
pdb|3FFN|B Chain B, Crystal Structure Of Calcium-Free Human Gelsolin
Length = 782
Score = 324 bits (831), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 220/748 (29%), Positives = 362/748 (48%), Gaps = 85/748 (11%)
Query: 12 FEGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHYWLGN 71
F AGK+ GL+IW +E LV VP + +G F+TG AYVIL T L++G Q+D+HYWLGN
Sbjct: 59 FLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGN 118
Query: 72 DVNEEDSTLVSDKALELDAALGSCTVQYREVQGQETEKFLSYFRPCIIPLDGKYSLRSGK 131
+ ++++S + ++LD L VQ+REVQG E+ FL YF+ + KY + G
Sbjct: 119 ECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGL-----KYK-KGGV 172
Query: 132 SNG-------ETYKISMLTCKGDHVVRVKEVPFSRSSLNHNDVFIVDTASKIFLFSGCNS 184
++G E + KG VVR EVP S S N+ D FI+D + I + G NS
Sbjct: 173 ASGFKHVVPNEVVVQRLFQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNS 232
Query: 185 SIQERAKALEVVQYIKEDKHGGKCGVATVEDGKFVGDSDVGEFWSLFGGYAPIPRDSP-S 243
+ ER KA +V + I++++ G+ V E+G ++ + G +P + +
Sbjct: 233 NRYERLKATQVSKGIRDNERSGRARVHVSEEG-----TEPEAMLQVLGPKPALPAGTEDT 287
Query: 244 AFQQQPDTPSTTFFWINLQGKLCQIA----ANSLNKDMLEKDKCYMLDCVNE--VFVWTG 297
A + + + ++ ++ N + L+ + C++LD + +FVW G
Sbjct: 288 AKEDAANRKLAKLYKVSNGAGTMSVSLVADENPFAQGALKSEDCFILDHGKDGKIFVWKG 347
Query: 298 RNTSITERRISISASEDFLRNQGRTTGTHLTFLTEGLETTVFRSYFDSWPQIAEPKLYD- 356
+ + ER+ ++ + DF+ T ++ L EG ET +F+ +F +W +P D
Sbjct: 348 KQANTEERKAALKTASDFITKMDYPKQTQVSVLPEGGETPLFKQFFKNW---RDPDQTDG 404
Query: 357 ----------EGREKV----------AAIFKQQGHDVKELPEEDFEPYVNCRGILKVWRV 396
E+V A+ Q G D + G ++WR+
Sbjct: 405 LGLSYLSSHIANVERVPFDAATLHTSTAMAAQHGMDD------------DGTGQKQIWRI 452
Query: 397 NGDELSLLPAAEQMKLFSGDCYIVKYTYPGNGRDENVIYAWFGHESMTEDRAAAISHMSA 456
G + A + + GD YI+ Y Y GR +IY W G +S T+D AA + ++A
Sbjct: 453 EGSNKVPVDPATYGQFYGGDSYIILYNYRHGGRQGQIIYNWQGAQS-TQDEVAASAILTA 511
Query: 457 IVDST-RGEAVMAQVHQDMEPVQFFLIF--QSLIVFKGGLSTQYKKFIVEEGIVDETYDE 513
+D G V ++V Q EP +F + +I++KGG S + +
Sbjct: 512 QLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIIYKGGTSREGGQTA-----------P 560
Query: 514 KKMALFCIQGTSPCNMQAFQVDRVSTCLNSSYCYILQNGASVFTWIGNLSSSRDHDLLDR 573
LF ++ S +A +V + LNS+ ++L+ ++ + W+G +S +
Sbjct: 561 ASTRLFQVRANSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASEAEKTGAQE 620
Query: 574 MVELINPTWQPISVREGSEPEVFWNALGGKSEY---PREKEIKGFIEDPHLFTCTLTEGD 630
++ ++ QP+ V EGSEP+ FW ALGGK+ Y PR K+ K P LF C+ G
Sbjct: 621 LLRVLRA--QPVQVAEGSEPDGFWEALGGKAAYRTSPRLKDKKMDAHPPRLFACSNKIGR 678
Query: 631 LKVKEIYN-FTQDDLTTEDILVLDCCREIYVWIGCHSDLNSKQQALNIGQKFLETDILVE 689
++E+ Q+DL T+D+++LD +++VW+G S K +AL ++++ETD
Sbjct: 679 FVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTEALTSAKRYIETD--PA 736
Query: 690 GLSLETPIYVVTEGHEPPFFTCFF-AWD 716
TPI VV +G EPP F +F WD
Sbjct: 737 NRDRRTPITVVKQGFEPPSFVGWFLGWD 764
>pdb|1RGI|G Chain G, Crystal Structure Of Gelsolin Domains G1-G3 Bound To Actin
Length = 346
Score = 182 bits (462), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 109/349 (31%), Positives = 179/349 (51%), Gaps = 25/349 (7%)
Query: 12 FEGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHYWLGN 71
F AGK+ GL+IW +E LV VP + +G F+TG AYVIL T L++G Q+D+HYWLGN
Sbjct: 7 FLKAGKEPGLQIWRVEKFDLVPVPPNLYGDFFTGDAYVILKTVQLRNGILQYDLHYWLGN 66
Query: 72 DVNEEDSTLVSDKALELDAALGSCTVQYREVQGQETEKFLSYFRPCIIPLDGKYSLRSGK 131
+ ++++S + ++LD L VQ+REVQG E+ FL YF+ + KY + G
Sbjct: 67 ECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGL-----KYK-KGGV 120
Query: 132 SNG-------ETYKISMLTCKGDHVVRVKEVPFSRSSLNHNDVFIVDTASKIFLFSGCNS 184
++G E +L KG VVR EVP S S N+ D FI+D + I+ + G S
Sbjct: 121 ASGFKHVVPNEVVVQRLLQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIYQWCGSKS 180
Query: 185 SIQERAKALEVVQYIKEDKHGGKCGVATVEDGKFVGDSDVGEFWSLFGGYAPIPRDSPSA 244
+ ER KA +V + I++++ G+ V+ E+G ++ + G +P +
Sbjct: 181 NRFERLKATQVSKGIRDNERSGRAQVSVFEEG-----AEPEAMLQVLGPKPTLPEATEDT 235
Query: 245 FQQQPDTPSTTFFWINLQGKLCQIAA-----NSLNKDMLEKDKCYMLDCVNE--VFVWTG 297
++ + G + + N + L + C++LD + +FVW G
Sbjct: 236 VKEDAANRKLAKLYKVSNGAGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVWKG 295
Query: 298 RNTSITERRISISASEDFLRNQGRTTGTHLTFLTEGLETTVFRSYFDSW 346
+ ++ ER+ ++ + DF+ T ++ L EG ET +FR +F +W
Sbjct: 296 KQANMEERKAALKTASDFISKMDYPKQTQVSVLPEGGETPLFRQFFKNW 344
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/340 (25%), Positives = 148/340 (43%), Gaps = 31/340 (9%)
Query: 391 LKVWRVNGDELSLLPAAEQMKLFSGDCYIV-KYTYPGNGRDENVIYAWFGHESMTEDRAA 449
L++WRV +L +P F+GD Y++ K NG + ++ W G+E ++ A
Sbjct: 16 LQIWRVEKFDLVPVPPNLYGDFFTGDAYVILKTVQLRNGILQYDLHYWLGNECSQDESGA 75
Query: 450 AISHMSAIVDSTRGEAVMAQVHQDMEPVQFFLIFQSLIVF-KGGLSTQYKKFIVEEGIVD 508
A + D G AV + Q E F F+S + + KGG+++ +K + E +V
Sbjct: 76 AAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGFKHVVPNEVVVQ 135
Query: 509 ETYDEKKMALFCIQGTSPCNMQAFQVDRVSTCLNSSYCYILQNGASVFTWIGNLSSSRDH 568
L ++G ++A +V N+ C+IL G +++ W G+ S+ +
Sbjct: 136 R--------LLQVKGRRV--VRATEVPVSWESFNNGDCFILDLGNNIYQWCGSKSNRFER 185
Query: 569 DLLDRMVELINPTWQP----ISV-REGSEPEVFWNALGGKSEYPRE-----KEIKGFIED 618
++ + I + +SV EG+EPE LG K P KE +
Sbjct: 186 LKATQVSKGIRDNERSGRAQVSVFEEGAEPEAMLQVLGPKPTLPEATEDTVKEDAANRKL 245
Query: 619 PHLFTCTLTEGDLKVKEIYN---FTQDDLTTEDILVLDCCRE--IYVWIGCHSDLNSKQQ 673
L+ + G + V + + F Q L +ED +LD ++ I+VW G +++ ++
Sbjct: 246 AKLYKVSNGAGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVWKGKQANMEERKA 305
Query: 674 ALNIGQKFLETDILVEGLSLETPIYVVTEGHEPPFFTCFF 713
AL F+ +T + V+ EG E P F FF
Sbjct: 306 ALKTASDFISK----MDYPKQTQVSVLPEGGETPLFRQFF 341
>pdb|3FG7|A Chain A, The Crystal Structure Of Villin Domain 6
pdb|3FG7|B Chain B, The Crystal Structure Of Villin Domain 6
Length = 398
Score = 179 bits (454), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 110/336 (32%), Positives = 175/336 (52%), Gaps = 20/336 (5%)
Query: 389 GILKVWRVNGDELSLLPAAEQMKLFSGDCYIVKYTYPGNGRDENVIYAWFGHESMTEDRA 448
G ++VWR+ EL + + + GDCY++ YTY + ++Y W G ++ ++D
Sbjct: 62 GEVQVWRIENLELVPVDSKWLGHFYGGDCYLLLYTYLIGEKQHYLLYVWQGSQA-SQDEI 120
Query: 449 AAISHMSAIVDST-RGEAVMAQVHQDMEPVQFFLIFQS-LIVFKGGLSTQYKKFIVEEGI 506
A ++ + I+D GE V +V EP IF+ ++V++GG S + +E G
Sbjct: 121 TASAYQAVILDQKYNGEPVQIRVPMGKEPPHLMSIFKGRMVVYQGGTS---RTNNLETG- 176
Query: 507 VDETYDEKKMALFCIQGTSPCNMQAFQVDRVSTCLNSSYCYILQNGASVFTWIGNLSSSR 566
LF +QGT N +AF+V + LNS+ ++L+ + + W G S
Sbjct: 177 -------PSTRLFQVQGTGANNTKAFEVPARANFLNSNDVFVLKTQSCCYLWCGKGCSGD 229
Query: 567 DHDLLDRMVELINPTWQPISVREGSEPEVFWNALGGKSEYPREKEIK--GFIEDPHLFTC 624
+ ++ + + I+ T + + V EG EP FW ALGGK+ Y K ++ + P LF C
Sbjct: 230 EREMAKMVADTISRTEKQVVV-EGQEPANFWMALGGKAPYANTKRLQEENLVITPRLFEC 288
Query: 625 TLTEGDLKVKEIYNFTQDDLTTEDILVLDCCREIYVWIGCHSDLNSKQQALNIGQKFLET 684
+ G EI +F QDDL +D+ +LD +++ WIG H++ K+ A Q++L+T
Sbjct: 289 SNKTGRFLATEIPDFNQDDLEEDDVFLLDVWDQVFFWIGKHANEEEKKAAATTAQEYLKT 348
Query: 685 DILVEGLSLETPIYVVTEGHEPPFFTCFF-AWDPLK 719
G ETPI VV +GHEPP FT +F AWDP K
Sbjct: 349 H--PSGRDPETPIIVVKQGHEPPTFTGWFLAWDPFK 382
Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 155/337 (45%), Gaps = 20/337 (5%)
Query: 13 EGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHY-WLGN 71
+G+G+ +++W IENL+LV V G FY G Y++L T L+ G QH + Y W G+
Sbjct: 59 DGSGE---VQVWRIENLELVPVDSKWLGHFYGGDCYLLLYTYLI--GEKQHYLLYVWQGS 113
Query: 72 DVNEEDSTLVSDKALELDAALGSCTVQYREVQGQETEKFLSYFRPCIIPLDGKYSLRSGK 131
++++ T + +A+ LD VQ R G+E +S F+ ++ G S +
Sbjct: 114 QASQDEITASAYQAVILDQKYNGEPVQIRVPMGKEPPHLMSIFKGRMVVYQGGTSRTNNL 173
Query: 132 SNGETYKISMLTCKGDHVVRVKEVPFSRSSLNHNDVFIVDTASKIFLFSGCNSSIQERAK 191
G + ++ + G + + EVP + LN NDVF++ T S +L+ G S ER
Sbjct: 174 ETGPSTRLFQVQGTGANNTKAFEVPARANFLNSNDVFVLKTQSCCYLWCGKGCSGDEREM 233
Query: 192 ALEVVQYIKEDKHGGKCGVATVEDGKFVGDSDVGEFWSLFGGYAPIPRDSPSAFQQQPDT 251
A V I + E V + FW GG AP + T
Sbjct: 234 AKMVADTI-----------SRTEKQVVVEGQEPANFWMALGGKAPYANTKRLQEENLVIT 282
Query: 252 PSTTFFWINLQGKLCQIAANSLNKDMLEKDKCYMLDCVNEVFVWTGRNTSITERRISISA 311
P F N G+ N+D LE+D ++LD ++VF W G++ + E++ + +
Sbjct: 283 PR-LFECSNKTGRFLATEIPDFNQDDLEEDDVFLLDVWDQVFFWIGKHANEEEKKAAATT 341
Query: 312 SEDFLRNQ--GRTTGTHLTFLTEGLETTVFRSYFDSW 346
++++L+ GR T + + +G E F +F +W
Sbjct: 342 AQEYLKTHPSGRDPETPIIVVKQGHEPPTFTGWFLAW 378
>pdb|3FFK|A Chain A, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound To
Actin
pdb|3FFK|D Chain D, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound To
Actin
Length = 377
Score = 177 bits (448), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 180/349 (51%), Gaps = 25/349 (7%)
Query: 12 FEGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHYWLGN 71
F AGK+ GL+IW +E LV VP + +G F+TG AYVIL T L++G Q+D+HYWLGN
Sbjct: 10 FLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGN 69
Query: 72 DVNEEDSTLVSDKALELDAALGSCTVQYREVQGQETEKFLSYFRPCIIPLDGKYSLRSGK 131
+ ++++S + ++LD L VQ+REVQG E+ FL YF+ + KY + G
Sbjct: 70 ECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGL-----KYK-KGGV 123
Query: 132 SNG-------ETYKISMLTCKGDHVVRVKEVPFSRSSLNHNDVFIVDTASKIFLFSGCNS 184
++G E + KG VVR EVP S S N+ D FI+D + I + G NS
Sbjct: 124 ASGFKHVVPNEVVVQRLFQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNS 183
Query: 185 SIQERAKALEVVQYIKEDKHGGKCGVATVEDGKFVGDSDVGEFWSLFGGYAPIPRDSP-S 243
+ ER KA +V + I++++ G+ V E+G ++ + G +P + +
Sbjct: 184 NRYERLKATQVSKGIRDNERSGRARVHVSEEG-----TEPEAMLQVLGPKPALPAGTEDT 238
Query: 244 AFQQQPDTPSTTFFWINLQGKLCQIA----ANSLNKDMLEKDKCYMLDCVNE--VFVWTG 297
A + + + ++ ++ N + L+ + C++LD + +FVW G
Sbjct: 239 AKEDAANRKLAKLYKVSNGAGTMSVSLVADENPFAQGALKSEDCFILDHGKDGKIFVWKG 298
Query: 298 RNTSITERRISISASEDFLRNQGRTTGTHLTFLTEGLETTVFRSYFDSW 346
+ + ER+ ++ + DF+ T ++ L EG ET +F+ +F +W
Sbjct: 299 KQANTEERKAALKTASDFITKMDYPKQTQVSVLPEGGETPLFKQFFKNW 347
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 145/340 (42%), Gaps = 31/340 (9%)
Query: 391 LKVWRVNGDELSLLPAAEQMKLFSGDCYIV-KYTYPGNGRDENVIYAWFGHESMTEDRAA 449
L++WRV +L +P F+GD Y++ K NG + ++ W G+E ++ A
Sbjct: 19 LQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGA 78
Query: 450 AISHMSAIVDSTRGEAVMAQVHQDMEPVQFFLIFQSLIVF-KGGLSTQYKKFIVEEGIVD 508
A + D G AV + Q E F F+S + + KGG+++ +K + E +V
Sbjct: 79 AAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGFKHVVPNEVVVQ 138
Query: 509 ETYDEKKMALFCIQGTSPCNMQAFQVDRVSTCLNSSYCYILQNGASVFTWIGNLSSSRDH 568
LF ++G ++A +V N+ C+IL G ++ W G+ S+ +
Sbjct: 139 R--------LFQVKGRRV--VRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYER 188
Query: 569 DLLDRMVELINPTWQPISVR-----EGSEPEVFWNALGGKSEYPR-----EKEIKGFIED 618
++ + I + R EG+EPE LG K P KE +
Sbjct: 189 LKATQVSKGIRDNERSGRARVHVSEEGTEPEAMLQVLGPKPALPAGTEDTAKEDAANRKL 248
Query: 619 PHLFTCTLTEGDLKVKEIYN---FTQDDLTTEDILVLDCCRE--IYVWIGCHSDLNSKQQ 673
L+ + G + V + + F Q L +ED +LD ++ I+VW G ++ ++
Sbjct: 249 AKLYKVSNGAGTMSVSLVADENPFAQGALKSEDCFILDHGKDGKIFVWKGKQANTEERKA 308
Query: 674 ALNIGQKFLETDILVEGLSLETPIYVVTEGHEPPFFTCFF 713
AL F I +T + V+ EG E P F FF
Sbjct: 309 ALKTASDF----ITKMDYPKQTQVSVLPEGGETPLFKQFF 344
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 68/180 (37%), Gaps = 32/180 (17%)
Query: 283 CYMLDCVNEVFVWTGRNTSITERRISISASEDFLRNQGRTTGTHLTFLTEGLETTVFRSY 342
C++LD N + W G N++ ER + S+ +R+ R+ + EG E
Sbjct: 166 CFILDLGNNIHQWCGSNSNRYERLKATQVSKG-IRDNERSGRARVHVSEEGTEPEAMLQV 224
Query: 343 FDSWPQIA----EPKLYDEGREKVAAIFKQQGHDVKELPEEDFEPYVNCRGILKVWRVNG 398
P + + D K+A ++K N G + V V
Sbjct: 225 LGPKPALPAGTEDTAKEDAANRKLAKLYK----------------VSNGAGTMSVSLV-A 267
Query: 399 DELSLLPAAEQMKLFSGDCYIVKYTYPGNGRDENVIYAWFGHESMTEDRAAAISHMSAIV 458
DE A L S DC+I+ + G I+ W G ++ TE+R AA+ S +
Sbjct: 268 DENPFAQGA----LKSEDCFILDHGKDGK------IFVWKGKQANTEERKAALKTASDFI 317
>pdb|1H1V|G Chain G, Gelsolin G4-G6ACTIN COMPLEX
Length = 331
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/336 (30%), Positives = 170/336 (50%), Gaps = 24/336 (7%)
Query: 389 GILKVWRVNGDELSLLPAAEQMKLFSGDCYIVKYTYPGNGRDENVIYAWFGHESMTEDRA 448
G ++WR+ G + A + + GD YI+ Y Y GR +IY W G +S T+D
Sbjct: 7 GQKQIWRIEGSNKVPVDPATYGQFYGGDSYIILYNYRHGGRQGQIIYNWQGAQS-TQDEV 65
Query: 449 AAISHMSAIVDST-RGEAVMAQVHQDMEPVQFFLIF--QSLIVFKGGLSTQYKKFIVEEG 505
AA + ++A +D G V ++V Q EP +F + +I++KGG S + +
Sbjct: 66 AASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIIYKGGTSREGGQTA---- 121
Query: 506 IVDETYDEKKMALFCIQGTSPCNMQAFQVDRVSTCLNSSYCYILQNGASVFTWIGNLSSS 565
LF ++ S +A +V + LNS+ ++L+ ++ + W+G +S
Sbjct: 122 -------PASTRLFQVRANSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASE 174
Query: 566 RDHDLLDRMVELINPTWQPISVREGSEPEVFWNALGGKSEY---PREKEIKGFIEDPHLF 622
+ ++ ++ QP+ V EGSEP+ FW ALGGK+ Y PR K+ K P LF
Sbjct: 175 AEKTGAQELLRVLRA--QPVQVAEGSEPDGFWEALGGKAAYRTSPRLKDKKMDAHPPRLF 232
Query: 623 TCTLTEGDLKVKEIYN-FTQDDLTTEDILVLDCCREIYVWIGCHSDLNSKQQALNIGQKF 681
C+ G ++E+ Q+DL T+D+++LD +++VW+G S K +AL +++
Sbjct: 233 ACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTEALTSAKRY 292
Query: 682 LETDILVEGLSLETPIYVVTEGHEPPFFTCFF-AWD 716
+ETD TPI VV +G EPP F +F WD
Sbjct: 293 IETDPA--NRDRRTPITVVKQGFEPPSFVGWFLGWD 326
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/341 (26%), Positives = 156/341 (45%), Gaps = 26/341 (7%)
Query: 13 EGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHY-WLGN 71
+G G+K +IW IE V V +++G+FY G +Y+IL + G Q I Y W G
Sbjct: 4 DGTGQK---QIWRIEGSNKVPVDPATYGQFYGGDSYIILYN--YRHGGRQGQIIYNWQGA 58
Query: 72 DVNEEDSTLVSDKALELDAALGSCTVQYREVQGQETEKFLSYF--RPCIIPLDGKYSLRS 129
+++ + +LD LG VQ R VQG+E +S F +P II G S
Sbjct: 59 QSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMII-YKGGTSREG 117
Query: 130 GKSNGETYKISMLTCKGDHVVRVKEVPFSRSSLNHNDVFIVDTASKIFLFSGCNSSIQER 189
G++ + ++ + R EV +LN ND F++ T S +L+ G +S E+
Sbjct: 118 GQTAPASTRLFQVRANSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASEAEK 177
Query: 190 AKALEVVQYIKEDKHGGKCGVATVEDGKFVGDSDVGEFWSLFGGYAPIPRDSPSAFQQQP 249
A E+++ ++ V +G S+ FW GG A R SP ++
Sbjct: 178 TGAQELLRVLRAQP-------VQVAEG-----SEPDGFWEALGGKAAY-RTSPRLKDKKM 224
Query: 250 DT-PSTTFFWINLQGK-LCQIAANSLNKDMLEKDKCYMLDCVNEVFVWTGRNTSITERRI 307
D P F N G+ + + L ++ L D +LD ++VFVW G+++ E+
Sbjct: 225 DAHPPRLFACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTE 284
Query: 308 SISASEDFLRNQ--GRTTGTHLTFLTEGLETTVFRSYFDSW 346
++++++ ++ R T +T + +G E F +F W
Sbjct: 285 ALTSAKRYIETDPANRDRRTPITVVKQGFEPPSFVGWFLGW 325
>pdb|1P8X|A Chain A, The Calcium-activated C-terminal Half Of Gelsolin
pdb|1P8X|B Chain B, The Calcium-activated C-terminal Half Of Gelsolin
pdb|1P8X|C Chain C, The Calcium-activated C-terminal Half Of Gelsolin
pdb|2FH1|A Chain A, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph
4.5
pdb|2FH1|B Chain B, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph
4.5
pdb|2FH1|C Chain C, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph
4.5
pdb|2FH2|A Chain A, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 4.5
pdb|2FH2|B Chain B, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 4.5
pdb|2FH2|C Chain C, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 4.5
pdb|2FH3|A Chain A, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph 8
pdb|2FH3|B Chain B, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph 8
pdb|2FH3|C Chain C, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph 8
pdb|2FH4|A Chain A, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 8
pdb|2FH4|B Chain B, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 8
pdb|2FH4|C Chain C, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 8
Length = 344
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/336 (30%), Positives = 170/336 (50%), Gaps = 24/336 (7%)
Query: 389 GILKVWRVNGDELSLLPAAEQMKLFSGDCYIVKYTYPGNGRDENVIYAWFGHESMTEDRA 448
G ++WR+ G + A + + GD YI+ Y Y GR +IY W G +S T+D
Sbjct: 7 GQKQIWRIEGSNKVPVDPATYGQFYGGDSYIILYNYRHGGRQGQIIYNWQGAQS-TQDEV 65
Query: 449 AAISHMSAIVDST-RGEAVMAQVHQDMEPVQFFLIF--QSLIVFKGGLSTQYKKFIVEEG 505
AA + ++A +D G V ++V Q EP +F + +I++KGG S + +
Sbjct: 66 AASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIIYKGGTSREGGQTA---- 121
Query: 506 IVDETYDEKKMALFCIQGTSPCNMQAFQVDRVSTCLNSSYCYILQNGASVFTWIGNLSSS 565
LF ++ S +A +V + LNS+ ++L+ ++ + W+G +S
Sbjct: 122 -------PASTRLFQVRANSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASE 174
Query: 566 RDHDLLDRMVELINPTWQPISVREGSEPEVFWNALGGKSEY---PREKEIKGFIEDPHLF 622
+ ++ ++ QP+ V EGSEP+ FW ALGGK+ Y PR K+ K P LF
Sbjct: 175 AEKTGAQELLRVLRA--QPVQVAEGSEPDGFWEALGGKAAYRTSPRLKDKKMDAHPPRLF 232
Query: 623 TCTLTEGDLKVKEIYN-FTQDDLTTEDILVLDCCREIYVWIGCHSDLNSKQQALNIGQKF 681
C+ G ++E+ Q+DL T+D+++LD +++VW+G S K +AL +++
Sbjct: 233 ACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTEALTSAKRY 292
Query: 682 LETDILVEGLSLETPIYVVTEGHEPPFFTCFF-AWD 716
+ETD TPI VV +G EPP F +F WD
Sbjct: 293 IETD--PANRDRRTPITVVKQGFEPPSFVGWFLGWD 326
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/341 (26%), Positives = 156/341 (45%), Gaps = 26/341 (7%)
Query: 13 EGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHY-WLGN 71
+G G+K +IW IE V V +++G+FY G +Y+IL + G Q I Y W G
Sbjct: 4 DGTGQK---QIWRIEGSNKVPVDPATYGQFYGGDSYIILYN--YRHGGRQGQIIYNWQGA 58
Query: 72 DVNEEDSTLVSDKALELDAALGSCTVQYREVQGQETEKFLSYF--RPCIIPLDGKYSLRS 129
+++ + +LD LG VQ R VQG+E +S F +P II G S
Sbjct: 59 QSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMII-YKGGTSREG 117
Query: 130 GKSNGETYKISMLTCKGDHVVRVKEVPFSRSSLNHNDVFIVDTASKIFLFSGCNSSIQER 189
G++ + ++ + R EV +LN ND F++ T S +L+ G +S E+
Sbjct: 118 GQTAPASTRLFQVRANSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASEAEK 177
Query: 190 AKALEVVQYIKEDKHGGKCGVATVEDGKFVGDSDVGEFWSLFGGYAPIPRDSPSAFQQQP 249
A E+++ ++ V +G S+ FW GG A R SP ++
Sbjct: 178 TGAQELLRVLRAQP-------VQVAEG-----SEPDGFWEALGGKAAY-RTSPRLKDKKM 224
Query: 250 DT-PSTTFFWINLQGK-LCQIAANSLNKDMLEKDKCYMLDCVNEVFVWTGRNTSITERRI 307
D P F N G+ + + L ++ L D +LD ++VFVW G+++ E+
Sbjct: 225 DAHPPRLFACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTE 284
Query: 308 SISASEDFLRNQ--GRTTGTHLTFLTEGLETTVFRSYFDSW 346
++++++ ++ R T +T + +G E F +F W
Sbjct: 285 ALTSAKRYIETDPANRDRRTPITVVKQGFEPPSFVGWFLGW 325
>pdb|1NPH|A Chain A, Gelsolin Domains 4-6 In Active, Actin Free Conformation
Identifies Sites Of Regulatory Calcium Ions
Length = 329
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 104/336 (30%), Positives = 171/336 (50%), Gaps = 24/336 (7%)
Query: 389 GILKVWRVNGDELSLLPAAEQMKLFSGDCYIVKYTYPGNGRDENVIYAWFGHESMTEDRA 448
G ++WR+ G + A + + GD YI+ Y Y GR +IY W G +S T+D
Sbjct: 5 GQKQIWRIEGSNKVPVDPATYGQFYGGDSYIILYNYRHGGRQGQIIYNWQGAQS-TQDEV 63
Query: 449 AAISHMSAIVDST-RGEAVMAQVHQDMEPVQFFLIF--QSLIVFKGGLSTQYKKFIVEEG 505
AA + ++A +D G V ++V Q EP +F + +I++KGG S +
Sbjct: 64 AASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIIYKGGTSRDGGQTA---- 119
Query: 506 IVDETYDEKKMALFCIQGTSPCNMQAFQVDRVSTCLNSSYCYILQNGASVFTWIGNLSSS 565
+ LF ++ +S +A +V S LNS+ ++L+ ++ + W+G +S
Sbjct: 120 -------PASIRLFQVRASSSGATRAVEVMPKSGALNSNDAFVLKTPSAAYLWVGAGASE 172
Query: 566 RDHDLLDRMVELINPTWQPISVREGSEPEVFWNALGGKSEY---PREKEIKGFIEDPHLF 622
+ +++++ Q + V EGSEP+ FW ALGGK+ Y PR K+ K P LF
Sbjct: 173 AEKTAAQELLKVLRS--QHVQVEEGSEPDGFWEALGGKTSYRTSPRLKDKKMDAHPPRLF 230
Query: 623 TCTLTEGDLKVKEIYN-FTQDDLTTEDILVLDCCREIYVWIGCHSDLNSKQQALNIGQKF 681
C+ G ++E+ Q+DL T+D+++LD +++VW+G S K +AL +++
Sbjct: 231 ACSNRIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTEALTSAKRY 290
Query: 682 LETDILVEGLSLETPIYVVTEGHEPPFFTCFF-AWD 716
+ETD TPI VV +G EPP F +F WD
Sbjct: 291 IETD--PANRDRRTPITVVRQGFEPPSFVGWFLGWD 324
Score = 115 bits (288), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 93/341 (27%), Positives = 158/341 (46%), Gaps = 26/341 (7%)
Query: 13 EGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHY-WLGN 71
+G G+K +IW IE V V +++G+FY G +Y+IL + G Q I Y W G
Sbjct: 2 DGTGQK---QIWRIEGSNKVPVDPATYGQFYGGDSYIILYN--YRHGGRQGQIIYNWQGA 56
Query: 72 DVNEEDSTLVSDKALELDAALGSCTVQYREVQGQETEKFLSYF--RPCIIPLDGKYSLRS 129
+++ + +LD LG VQ R VQG+E +S F +P II G S
Sbjct: 57 QSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMII-YKGGTSRDG 115
Query: 130 GKSNGETYKISMLTCKGDHVVRVKEVPFSRSSLNHNDVFIVDTASKIFLFSGCNSSIQER 189
G++ + ++ + R EV +LN ND F++ T S +L+ G +S E+
Sbjct: 116 GQTAPASIRLFQVRASSSGATRAVEVMPKSGALNSNDAFVLKTPSAAYLWVGAGASEAEK 175
Query: 190 AKALEVVQYIKEDKHGGKCGVATVEDGKFVGDSDVGEFWSLFGGYAPIPRDSPSAFQQQP 249
A E+++ ++ +H VE+G S+ FW GG R SP ++
Sbjct: 176 TAAQELLKVLR-SQH------VQVEEG-----SEPDGFWEALGGKTSY-RTSPRLKDKKM 222
Query: 250 DT-PSTTFFWINLQGK-LCQIAANSLNKDMLEKDKCYMLDCVNEVFVWTGRNTSITERRI 307
D P F N G+ + + L ++ L D +LD ++VFVW G+++ E+
Sbjct: 223 DAHPPRLFACSNRIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTE 282
Query: 308 SISASEDFLRNQ--GRTTGTHLTFLTEGLETTVFRSYFDSW 346
++++++ ++ R T +T + +G E F +F W
Sbjct: 283 ALTSAKRYIETDPANRDRRTPITVVRQGFEPPSFVGWFLGW 323
>pdb|3FG6|A Chain A, Structure Of The C-terminus Of Adseverin
pdb|3FG6|C Chain C, Structure Of The C-terminus Of Adseverin
pdb|3FG6|G Chain G, Structure Of The C-terminus Of Adseverin
pdb|3FG6|E Chain E, Structure Of The C-terminus Of Adseverin
pdb|3FG6|F Chain F, Structure Of The C-terminus Of Adseverin
pdb|3FG6|H Chain H, Structure Of The C-terminus Of Adseverin
pdb|3FG6|D Chain D, Structure Of The C-terminus Of Adseverin
pdb|3FG6|B Chain B, Structure Of The C-terminus Of Adseverin
Length = 371
Score = 157 bits (396), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 104/341 (30%), Positives = 172/341 (50%), Gaps = 32/341 (9%)
Query: 389 GILKVWRVNGDELSLLPAAEQMKLFSGDCYIVKYTYPGNGRDENVIYAWFGHESMTEDRA 448
G +++WRV + + + + GDCYI+ YTYP +IY W G + T D
Sbjct: 52 GKVEIWRVENNGRIQVDQNSYGEFYGGDCYIILYTYPRG----QIIYTWQGANA-TRDEL 106
Query: 449 AAISHMSAIVD-STRGEAVMAQVHQDMEPVQFFLIFQS--LIVFKGGLSTQYKKFIVEEG 505
+ ++ +D S G+AV +V Q EPV +F+ LI++K G S + +
Sbjct: 107 TTSAFLTVQLDRSLGGQAVQIRVSQGKEPVHLLSLFKDKPLIIYKNGTSKKGGQAPA--- 163
Query: 506 IVDETYDEKKMALFCIQGTSPCNMQAFQVDRVSTCLNSSYCYIL---QNGASVFTWIGNL 562
LF ++ + +VD + LNS+ ++L QN S + W+G
Sbjct: 164 --------PPTRLFQVRRNLASITRIVEVDVDANSLNSNDVFVLKLPQN--SGYIWVGKG 213
Query: 563 SSSRDHDLLDRMVELINPTWQPISVREGSEPEVFWNALGGKSEYPREKEIKGFIED--PH 620
+S + + + ++ + + ++EG EPE FWN+LGGK +Y ++ ED P
Sbjct: 214 ASQEEEKGAEYVASVLKC--KTLRIQEGEEPEEFWNSLGGKKDYQTSPLLETQAEDHPPR 271
Query: 621 LFTCTLTEGDLKVKEIYN-FTQDDLTTEDILVLDCCREIYVWIGCHSDLNSKQQALNIGQ 679
L+ C+ G ++EI FTQDDL +D+++LD +I++WIG ++ K+++L +
Sbjct: 272 LYGCSNKTGRFVIEEIPGEFTQDDLAEDDVMLLDAWEQIFIWIGKDANEVEKKESLKSAK 331
Query: 680 KFLETDILVEGLSLETPIYVVTEGHEPPFFTCFF-AWDPLK 719
+LETD G TPI ++ +GHEPP FT +F WD K
Sbjct: 332 MYLETD--PSGRDKRTPIVIIKQGHEPPTFTGWFLGWDSSK 370
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 161/340 (47%), Gaps = 28/340 (8%)
Query: 13 EGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHYWLGND 72
+G+GK +EIW +EN + V ++S+G+FY G Y+IL T P I+ W G +
Sbjct: 49 DGSGK---VEIWRVENNGRIQVDQNSYGEFYGGDCYIILYTY-----PRGQIIYTWQGAN 100
Query: 73 VNEEDSTLVSDKALELDAALGSCTVQYREVQGQETEKFLSYF--RPCIIPLDGKYSLRSG 130
++ T + ++LD +LG VQ R QG+E LS F +P II +G S + G
Sbjct: 101 ATRDELTTSAFLTVQLDRSLGGQAVQIRVSQGKEPVHLLSLFKDKPLIIYKNGT-SKKGG 159
Query: 131 KSNGETYKISMLTCKGDHVVRVKEVPFSRSSLNHNDVFIVDTASKI-FLFSGCNSSIQER 189
++ ++ + + R+ EV +SLN NDVF++ +++ G +S QE
Sbjct: 160 QAPAPPTRLFQVRRNLASITRIVEVDVDANSLNSNDVFVLKLPQNSGYIWVGKGAS-QEE 218
Query: 190 AKALEVVQYIKEDKHGGKCGVATVEDGKFVGDSDVGEFWSLFGGYAPIPRDSPSAFQQQP 249
K E V + KC +++G+ + EFW+ GG + SP Q
Sbjct: 219 EKGAEYVASVL------KCKTLRIQEGE-----EPEEFWNSLGGKKDY-QTSPLLETQAE 266
Query: 250 DTPSTTFFWINLQGK-LCQIAANSLNKDMLEKDKCYMLDCVNEVFVWTGRNTSITERRIS 308
D P + N G+ + + +D L +D +LD ++F+W G++ + E++ S
Sbjct: 267 DHPPRLYGCSNKTGRFVIEEIPGEFTQDDLAEDDVMLLDAWEQIFIWIGKDANEVEKKES 326
Query: 309 ISASEDFLRN--QGRTTGTHLTFLTEGLETTVFRSYFDSW 346
+ +++ +L GR T + + +G E F +F W
Sbjct: 327 LKSAKMYLETDPSGRDKRTPIVIIKQGHEPPTFTGWFLGW 366
>pdb|1J72|A Chain A, Crystal Structure Of Mutant Macrophage Capping Protein
(Cap G) With Actin-Severing Activity In The Ca2+-Free
Form
Length = 347
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/352 (26%), Positives = 165/352 (46%), Gaps = 30/352 (8%)
Query: 10 SAFEGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQ-HDIHYW 68
S F G+ + GL +W +E L+ V V + + G F++G +Y++L+ +GP + +H W
Sbjct: 10 SPFPGSVQDPGLHVWRVEKLKPVPVAQENQGVFFSGDSYLVLH-----NGPEEVSHLHLW 64
Query: 69 LGNDVNEEDSTLVSDKALELDAALGSCTVQYREVQGQETEKFLSYFRPCIIPLDGKY--- 125
+G + ++ + A++LD LG VQ+REVQG E++ F+SYF P KY
Sbjct: 65 IGQQSSRDEQGACAVLAVQLDDYLGGRPVQHREVQGNESDLFMSYF-----PRGLKYQEG 119
Query: 126 SLRSGKSN---GETYKISMLTCKGDHVVRVKEVPFSRSSLNHNDVFIVDTASKIFLFSGC 182
+ SG + E + KG +R E + S N D FI+D IF + G
Sbjct: 120 GVESGFKHVVPNEVVVQRLYQVKGKKNIRATERALNWDSFNTGDCFILDLGQNIFAWCGG 179
Query: 183 NSSIQERAKALEVVQYIKEDKHGGKCGVATVEDGKFVGDSDVGEFWSLFGGYAPIPRDSP 242
S+I ER KA ++ I++ + GK V V DG+ + E + G + +P
Sbjct: 180 KSNILERNKARDLALAIRDSERQGKAQVEIVTDGE-----EPAEMIQVLGPKPALKEGNP 234
Query: 243 SAFQQQPDTPSTTFFWINL-----QGKLCQIAANS-LNKDMLEKDKCYMLD--CVNEVFV 294
+ + Q L ++A +S ++L D C++LD ++++
Sbjct: 235 EEDLTADKANAQAAALYKVSDATGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYI 294
Query: 295 WTGRNTSITERRISISASEDFLRNQGRTTGTHLTFLTEGLETTVFRSYFDSW 346
W GR + ER+ ++ +E F+ T + L +G E+ +F+ +F W
Sbjct: 295 WKGRKANEKERQAALQVAEGFISRMQYAPNTQVEILPQGRESPIFKQFFKDW 346
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 143/343 (41%), Gaps = 40/343 (11%)
Query: 391 LKVWRVNGDELSLLPAAEQMK--LFSGDCYIVKYTYPGNGRDENVIYAWFGHESMTEDRA 448
L VWRV ++L +P A++ + FSGD Y+V + P + + ++ W G +S +++
Sbjct: 21 LHVWRV--EKLKPVPVAQENQGVFFSGDSYLVLHNGP---EEVSHLHLWIGQQSSRDEQG 75
Query: 449 AAISHMSAIVDSTRGEAVMAQVHQDMEPVQFFLIFQSLIVFK-GGLSTQYKKFIVEEGIV 507
A + D G V + Q E F F + ++ GG+ + +K + E +V
Sbjct: 76 ACAVLAVQLDDYLGGRPVQHREVQGNESDLFMSYFPRGLKYQEGGVESGFKHVVPNEVVV 135
Query: 508 DETYDEKKMALFCIQGTSPCNMQAFQVDRVSTCLNSSYCYILQNGASVFTWIGNLSS--- 564
Y K N++A + N+ C+IL G ++F W G S+
Sbjct: 136 QRLYQVKGKK----------NIRATERALNWDSFNTGDCFILDLGQNIFAWCGGKSNILE 185
Query: 565 ---SRDHDLLDRMVELINPTWQPISVREGSEPEVFWNALGGKSEY----PREK--EIKGF 615
+RD L R E I V +G EP LG K P E K
Sbjct: 186 RNKARDLALAIRDSERQGKAQVEI-VTDGEEPAEMIQVLGPKPALKEGNPEEDLTADKAN 244
Query: 616 IEDPHLFTCTLTEGDL---KVKEIYNFTQDDLTTEDILVLD--CCREIYVWIGCHSDLNS 670
+ L+ + G + KV + F + L ++D VLD C +IY+W G ++
Sbjct: 245 AQAAALYKVSDATGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANEKE 304
Query: 671 KQQALNIGQKFLETDILVEGLSLETPIYVVTEGHEPPFFTCFF 713
+Q AL + + F+ + T + ++ +G E P F FF
Sbjct: 305 RQAALQVAEGFISR----MQYAPNTQVEILPQGRESPIFKQFF 343
>pdb|1JHW|A Chain A, Ca2+-Binding Mimicry In The Crystal Structure Of The
Eu3+-Bound Mutant Human Macrophage Capping Protein Cap G
Length = 347
Score = 135 bits (341), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 95/353 (26%), Positives = 164/353 (46%), Gaps = 32/353 (9%)
Query: 10 SAFEGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQ-HDIHYW 68
S F G+ + GL +W +E L+ V V + + G F++G +Y++L+ +GP + +H W
Sbjct: 10 SPFPGSVQDPGLHVWRVEKLKPVPVAQENQGVFFSGDSYLVLH-----NGPEEVSHLHLW 64
Query: 69 LGNDVNEEDSTLVSDKALELDAALGSCTVQYREVQGQETEKFLSYFRPCIIPLDGKYSLR 128
+G + ++ + A++LD LG VQ+REVQG E++ F+SYF P KY
Sbjct: 65 IGQQSSRDEQGACAVLAVQLDDYLGGRPVQHREVQGNESDLFMSYF-----PRGLKYQ-E 118
Query: 129 SGKSNG-------ETYKISMLTCKGDHVVRVKEVPFSRSSLNHNDVFIVDTASKIFLFSG 181
G +G E + KG +R E + S N D FI+D IF + G
Sbjct: 119 GGVESGFKHVVPNEVVVQRLYQVKGAKNIRATERALNWDSFNTGDCFILDLGQNIFAWCG 178
Query: 182 CNSSIQERAKALEVVQYIKEDKHGGKCGVATVEDGKFVGDSDVGEFWSLFGGYAPIPRDS 241
S+I ER KA ++ I++ + GK V V DG+ + E + G + +
Sbjct: 179 GKSNILERNKARDLALAIRDSERQGKAQVEIVTDGE-----EPAEMIQVLGPKPALKEGN 233
Query: 242 PSAFQQQPDTPSTTFFWINL-----QGKLCQIAANS-LNKDMLEKDKCYMLD--CVNEVF 293
P + + Q L ++A +S ++L D C++LD +++
Sbjct: 234 PEEDLTADKANAQAAALYKVSDATGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIY 293
Query: 294 VWTGRNTSITERRISISASEDFLRNQGRTTGTHLTFLTEGLETTVFRSYFDSW 346
+W GR + ER+ ++ +E F+ T + L +G E+ +F+ +F W
Sbjct: 294 IWKGRKANEKERQAALQVAEGFISRMQYAPNTQVEILPQGRESPIFKQFFKDW 346
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 143/343 (41%), Gaps = 40/343 (11%)
Query: 391 LKVWRVNGDELSLLPAAEQMK--LFSGDCYIVKYTYPGNGRDENVIYAWFGHESMTEDRA 448
L VWRV ++L +P A++ + FSGD Y+V + P + + ++ W G +S +++
Sbjct: 21 LHVWRV--EKLKPVPVAQENQGVFFSGDSYLVLHNGP---EEVSHLHLWIGQQSSRDEQG 75
Query: 449 AAISHMSAIVDSTRGEAVMAQVHQDMEPVQFFLIF-QSLIVFKGGLSTQYKKFIVEEGIV 507
A + D G V + Q E F F + L +GG+ + +K + E +V
Sbjct: 76 ACAVLAVQLDDYLGGRPVQHREVQGNESDLFMSYFPRGLKYQEGGVESGFKHVVPNEVVV 135
Query: 508 DETYDEKKMALFCIQGTSPCNMQAFQVDRVSTCLNSSYCYILQNGASVFTWIGNLSS--- 564
Y K N++A + N+ C+IL G ++F W G S+
Sbjct: 136 QRLYQVKGAK----------NIRATERALNWDSFNTGDCFILDLGQNIFAWCGGKSNILE 185
Query: 565 ---SRDHDLLDRMVELINPTWQPISVREGSEPEVFWNALGGKSEY----PREK--EIKGF 615
+RD L R E I V +G EP LG K P E K
Sbjct: 186 RNKARDLALAIRDSERQGKAQVEI-VTDGEEPAEMIQVLGPKPALKEGNPEEDLTADKAN 244
Query: 616 IEDPHLFTCTLTEGDL---KVKEIYNFTQDDLTTEDILVLD--CCREIYVWIGCHSDLNS 670
+ L+ + G + KV + F + L ++D VLD C +IY+W G ++
Sbjct: 245 AQAAALYKVSDATGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANEKE 304
Query: 671 KQQALNIGQKFLETDILVEGLSLETPIYVVTEGHEPPFFTCFF 713
+Q AL + + F+ + T + ++ +G E P F FF
Sbjct: 305 RQAALQVAEGFISR----MQYAPNTQVEILPQGRESPIFKQFF 343
>pdb|1P8Z|G Chain G, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin
Residues Val26-Glu156
Length = 136
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 71/107 (66%)
Query: 12 FEGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHYWLGN 71
F AGK+ GL+IW +E LV VP + +G F+TG AYVIL T L++G Q+D+HYWLGN
Sbjct: 8 FLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGN 67
Query: 72 DVNEEDSTLVSDKALELDAALGSCTVQYREVQGQETEKFLSYFRPCI 118
+ ++++S + ++LD L VQ+REVQG E+ FL YF+ +
Sbjct: 68 ECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGL 114
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 391 LKVWRVNGDELSLLPAAEQMKLFSGDCYIV-KYTYPGNGRDENVIYAWFGHESMTEDRAA 449
L++WRV +L +P F+GD Y++ K NG + ++ W G+E ++ A
Sbjct: 17 LQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGA 76
Query: 450 AISHMSAIVDSTRGEAVMAQVHQDMEPVQFFLIFQSLIVF-KGGLSTQYKKFIVEEGIV 507
A + D G AV + Q E F F+S + + KGG+++ +K + E +V
Sbjct: 77 AAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGFKHVVPNEVVV 135
>pdb|1YAG|G Chain G, Structure Of The Yeast Actin-human Gelsolin Segment 1
Complex
pdb|1YVN|G Chain G, The Yeast Actin Val 159 Asn Mutant Complex With Human
Gelsolin Segment 1.
pdb|1MDU|A Chain A, Crystal Structure Of The Chicken Actin Trimer Complexed
With Human Gelsolin Segment 1 (Gs-1)
pdb|1MDU|D Chain D, Crystal Structure Of The Chicken Actin Trimer Complexed
With Human Gelsolin Segment 1 (Gs-1)
pdb|1NLV|G Chain G, Crystal Structure Of Dictyostelium Discoideum Actin
Complexed With Ca Atp And Human Gelsolin Segment 1
pdb|1NM1|G Chain G, Crystal Structure Of D. Dicsoideum Actin Complexed With
Gelsolin Segment 1 And Mg Atp At 1.8 A Resolution
pdb|1NMD|G Chain G, Crystal Structure Of D. Discoideum Actin-Gelsolin Segment
1 Complex Crystallized In Presence Of Lithium Atp
pdb|3CJB|G Chain G, Actin Dimer Cross-Linked By V. Cholerae Martx Toxin And
Complexed With Gelsolin-Segment 1
pdb|3CJC|G Chain G, Actin Dimer Cross-Linked By V. Cholerae Martx Toxin And
Complexed With Dnase I And Gelsolin-Segment 1
Length = 125
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 71/107 (66%)
Query: 12 FEGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHYWLGN 71
F AGK+ GL+IW +E LV VP + +G F+TG AYVIL T L++G Q+D+HYWLGN
Sbjct: 8 FLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGN 67
Query: 72 DVNEEDSTLVSDKALELDAALGSCTVQYREVQGQETEKFLSYFRPCI 118
+ ++++S + ++LD L VQ+REVQG E+ FL YF+ +
Sbjct: 68 ECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGL 114
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 391 LKVWRVNGDELSLLPAAEQMKLFSGDCYIV-KYTYPGNGRDENVIYAWFGHESMTEDRAA 449
L++WRV +L +P F+GD Y++ K NG + ++ W G+E ++ A
Sbjct: 17 LQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGA 76
Query: 450 AISHMSAIVDSTRGEAVMAQVHQDMEPVQFFLIFQSLIVF-KGGLSTQY 497
A + D G AV + Q E F F+S + + KGG+++ +
Sbjct: 77 AAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF 125
>pdb|1D4X|G Chain G, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin
Complexed With Human Gelsolin Segment 1 At 1.75 A
Resolution
Length = 126
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 71/107 (66%)
Query: 12 FEGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHYWLGN 71
F AGK+ GL+IW +E LV VP + +G F+TG AYVIL T L++G Q+D+HYWLGN
Sbjct: 8 FLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGN 67
Query: 72 DVNEEDSTLVSDKALELDAALGSCTVQYREVQGQETEKFLSYFRPCI 118
+ ++++S + ++LD L VQ+REVQG E+ FL YF+ +
Sbjct: 68 ECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGL 114
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
Query: 391 LKVWRVNGDELSLLPAAEQMKLFSGDCYIV-KYTYPGNGRDENVIYAWFGHESMTEDRAA 449
L++WRV +L +P F+GD Y++ K NG + ++ W G+E ++ A
Sbjct: 17 LQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGA 76
Query: 450 AISHMSAIVDSTRGEAVMAQVHQDMEPVQFFLIFQSLIVF-KGGLSTQYK 498
A + D G AV + Q E F F+S + + KGG+++ +K
Sbjct: 77 AAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGFK 126
>pdb|3CI5|G Chain G, Complex Of Phosphorylated Dictyostelium Discoideum Actin
With Gelsolin
Length = 126
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 71/107 (66%)
Query: 12 FEGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHYWLGN 71
F AGK+ GL+IW +E LV VP + +G F+TG AYVIL T L++G Q+D+HYWLGN
Sbjct: 9 FLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGN 68
Query: 72 DVNEEDSTLVSDKALELDAALGSCTVQYREVQGQETEKFLSYFRPCI 118
+ ++++S + ++LD L VQ+REVQG E+ FL YF+ +
Sbjct: 69 ECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGL 115
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 391 LKVWRVNGDELSLLPAAEQMKLFSGDCYIV-KYTYPGNGRDENVIYAWFGHESMTEDRAA 449
L++WRV +L +P F+GD Y++ K NG + ++ W G+E ++ A
Sbjct: 18 LQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGA 77
Query: 450 AISHMSAIVDSTRGEAVMAQVHQDMEPVQFFLIFQSLIVF-KGGLSTQY 497
A + D G AV + Q E F F+S + + KGG+++ +
Sbjct: 78 AAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF 126
>pdb|3CIP|G Chain G, Complex Of Dictyostelium Discoideum Actin With Gelsolin
Length = 128
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 71/107 (66%)
Query: 12 FEGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHYWLGN 71
F AGK+ GL+IW +E LV VP + +G F+TG AYVIL T L++G Q+D+HYWLGN
Sbjct: 11 FLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGN 70
Query: 72 DVNEEDSTLVSDKALELDAALGSCTVQYREVQGQETEKFLSYFRPCI 118
+ ++++S + ++LD L VQ+REVQG E+ FL YF+ +
Sbjct: 71 ECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGL 117
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
Query: 370 GHDVKELPE---EDFEPYVNCRGILKVWRVNGDELSLLPAAEQMKLFSGDCYIV-KYTYP 425
GH V E PE EP L++WRV +L +P F+GD Y++ K
Sbjct: 2 GHMVVEHPEFLKAGKEP------GLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQL 55
Query: 426 GNGRDENVIYAWFGHESMTEDRAAAISHMSAIVDSTRGEAVMAQVHQDMEPVQFFLIFQS 485
NG + ++ W G+E ++ AA + D G AV + Q E F F+S
Sbjct: 56 RNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKS 115
Query: 486 LIVF-KGGLSTQY 497
+ + KGG+++ +
Sbjct: 116 GLKYKKGGVASGF 128
>pdb|2FF3|A Chain A, Crystal Structure Of Gelsolin Domain 1:n-Wasp V2 Motif
Hybrid In Complex With Actin
pdb|2FF6|G Chain G, Crystal Structure Of Gelsolin Domain 1:ciboulot Domain 2
Hybrid In Complex With Actin
Length = 150
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 71/107 (66%)
Query: 12 FEGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHYWLGN 71
F AGK+ GL+IW +E LV VP + +G F+TG AYVIL T L++G Q+D+HYWLGN
Sbjct: 30 FLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGN 89
Query: 72 DVNEEDSTLVSDKALELDAALGSCTVQYREVQGQETEKFLSYFRPCI 118
+ ++++S + ++LD L VQ+REVQG E+ FL YF+ +
Sbjct: 90 ECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGL 136
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
Query: 391 LKVWRVNGDELSLLPAAEQMKLFSGDCYIV-KYTYPGNGRDENVIYAWFGHESMTEDRAA 449
L++WRV +L +P F+GD Y++ K NG + ++ W G+E ++ A
Sbjct: 39 LQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGA 98
Query: 450 AISHMSAIVDSTRGEAVMAQVHQDMEPVQFFLIFQSLIVF-KGGLSTQYK 498
A + D G AV + Q E F F+S + + KGG+++ +K
Sbjct: 99 AAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGFK 148
>pdb|3TU5|B Chain B, Actin Complex With Gelsolin Segment 1 Fused To Cobl
Segment
Length = 297
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 71/107 (66%)
Query: 12 FEGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHYWLGN 71
F AGK+ GL+IW +E LV VP + +G F+TG AYVIL T L++G Q+D+HYWLGN
Sbjct: 26 FLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGN 85
Query: 72 DVNEEDSTLVSDKALELDAALGSCTVQYREVQGQETEKFLSYFRPCI 118
+ ++++S + ++LD L VQ+REVQG E+ FL YF+ +
Sbjct: 86 ECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGL 132
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Query: 391 LKVWRVNGDELSLLPAAEQMKLFSGDCYIV-KYTYPGNGRDENVIYAWFGHESMTEDRAA 449
L++WRV +L +P F+GD Y++ K NG + ++ W G+E ++ A
Sbjct: 35 LQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGA 94
Query: 450 AISHMSAIVDSTRGEAVMAQVHQDMEPVQFFLIFQSLIVF-KGGLSTQYKK 499
A + D G AV + Q E F F+S + + KGG++++ +K
Sbjct: 95 AAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASKLRK 145
>pdb|1T44|G Chain G, Structural Basis Of Actin Sequestration By Thymosin-B4:
Implications For Arp23 ACTIVATION
Length = 147
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 82/134 (61%), Gaps = 2/134 (1%)
Query: 12 FEGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHYWLGN 71
F AGK+ GL+IW +E LV VP + +G F+TG AYVIL T L++G Q+D+HYWLGN
Sbjct: 8 FLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGN 67
Query: 72 DVNEEDSTLVSDKALELDAALGSCTVQYREVQGQETEKFLSYFRPCIIPLDGKYSLRSGK 131
+ ++++S + ++LD L VQ+REVQG E+ FL YF+ + G + SG
Sbjct: 68 ECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKG--GVASGF 125
Query: 132 SNGETYKISMLTCK 145
+ ET + + L K
Sbjct: 126 KHVETQEKNPLPSK 139
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 391 LKVWRVNGDELSLLPAAEQMKLFSGDCYIV-KYTYPGNGRDENVIYAWFGHESMTEDRAA 449
L++WRV +L +P F+GD Y++ K NG + ++ W G+E ++ A
Sbjct: 17 LQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGA 76
Query: 450 AISHMSAIVDSTRGEAVMAQVHQDMEPVQFFLIFQSLIVF-KGGLSTQYKKFIVEE 504
A + D G AV + Q E F F+S + + KGG+++ +K +E
Sbjct: 77 AAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGFKHVETQE 132
>pdb|1C0F|S Chain S, Crystal Structure Of Dictyostelium Caatp-Actin In Complex
With Gelsolin Segment 1
pdb|1C0G|S Chain S, Crystal Structure Of 1:1 Complex Between Gelsolin Segment
1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT
228: Q228kT229AA230YE360H)
pdb|1DEJ|S Chain S, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA
Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN
Complex With Human Gelsolin Segment 1
pdb|3A5L|S Chain S, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In
Complex With Human Gelsolin Segment 1
pdb|3A5M|S Chain S, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In
Complex With Human Gelsolin Segment 1
pdb|3A5N|S Chain S, Crystal Structure Of A Dictyostelium P109a Ca2+-Actin In
Complex With Human Gelsolin Segment 1
pdb|3A5O|S Chain S, Crystal Structure Of A Dictyostelium P109i Ca2+-Actin In
Complex With Human Gelsolin Segment 1
Length = 127
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 70/107 (65%)
Query: 12 FEGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHYWLGN 71
F AGK+ GL+IW +E LV VP +G F+TG AYVIL T L++G Q+D+HYWLGN
Sbjct: 10 FLKAGKEPGLQIWRVEKFDLVPVPTCLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGN 69
Query: 72 DVNEEDSTLVSDKALELDAALGSCTVQYREVQGQETEKFLSYFRPCI 118
+ ++++S + ++LD L VQ+REVQG E+ FL YF+ +
Sbjct: 70 ECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGL 116
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 391 LKVWRVNGDELSLLPAAEQMKLFSGDCYIV-KYTYPGNGRDENVIYAWFGHESMTEDRAA 449
L++WRV +L +P F+GD Y++ K NG + ++ W G+E ++ A
Sbjct: 19 LQIWRVEKFDLVPVPTCLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGA 78
Query: 450 AISHMSAIVDSTRGEAVMAQVHQDMEPVQFFLIFQSLIVF-KGGLSTQY 497
A + D G AV + Q E F F+S + + KGG+++ +
Sbjct: 79 AAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF 127
>pdb|1EQY|S Chain S, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin
Domain 1
pdb|1ESV|S Chain S, Complex Between Latrunculin A:rabbit Muscle Alpha
Actin:human Gelsolin Domain 1
Length = 125
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 69/104 (66%)
Query: 12 FEGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHYWLGN 71
F AGK+ GL+IW +E LV VP +G F+TG AYVIL T L++G Q+D+HYWLGN
Sbjct: 8 FLKAGKEPGLQIWRVEKFDLVPVPTCLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGN 67
Query: 72 DVNEEDSTLVSDKALELDAALGSCTVQYREVQGQETEKFLSYFR 115
+ ++++S + ++LD L VQ+REVQG E+ FL YF+
Sbjct: 68 ECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFK 111
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 391 LKVWRVNGDELSLLPAAEQMKLFSGDCYIV-KYTYPGNGRDENVIYAWFGHESMTEDRAA 449
L++WRV +L +P F+GD Y++ K NG + ++ W G+E ++ A
Sbjct: 17 LQIWRVEKFDLVPVPTCLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGA 76
Query: 450 AISHMSAIVDSTRGEAVMAQVHQDMEPVQFFLIFQSLIVF-KGGLSTQY 497
A + D G AV + Q E F F+S + + KGG+++ +
Sbjct: 77 AAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF 125
>pdb|2VIK|A Chain A, Refined Structure Of The Actin-Severing Domain Villin 14t,
Determined By Solution Nmr, Minimized Average Structure
pdb|2VIL|A Chain A, Refined Structure Of The Actin-Severing Domain Villin 14t,
Determined By Solution Nmr, 11 Structures
Length = 126
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 67/104 (64%), Gaps = 1/104 (0%)
Query: 20 GLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHYWLGNDVNEEDST 79
G++IW IEN+++V VP S+G FY G YV+L+T SG ++IHYWLG + ++++
Sbjct: 17 GIQIWRIENMEMVPVPTKSYGNFYEGDCYVLLSTRKTGSGFS-YNIHYWLGKNSSQDEQG 75
Query: 80 LVSDKALELDAALGSCTVQYREVQGQETEKFLSYFRPCIIPLDG 123
+ ++D LGS VQ+REVQG E+E F +YF+ +I G
Sbjct: 76 AAAIYTTQMDEYLGSVAVQHREVQGHESETFRAYFKQGLIYKQG 119
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 391 LKVWRVNGDELSLLPAAEQMKLFSGDCYIVKYTYP-GNGRDENVIYAWFGHESMTEDRAA 449
+++WR+ E+ +P + GDCY++ T G+G N+ Y W G S +++ A
Sbjct: 18 IQIWRIENMEMVPVPTKSYGNFYEGDCYVLLSTRKTGSGFSYNIHY-WLGKNSSQDEQGA 76
Query: 450 AISHMSAIVDSTRGEAVMAQVHQDMEPVQFFLIF-QSLIVFKGGLSTQYK 498
A + + + + AV + Q E F F Q LI +GG+++ K
Sbjct: 77 AAIYTTQMDEYLGSVAVQHREVQGHESETFRAYFKQGLIYKQGGVASGMK 126
>pdb|2LLF|A Chain A, Sixth Gelsolin-like Domain Of Villin In 5 Mm Cacl2
Length = 107
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Query: 619 PHLFTCTLTEGDLKVKEIYNFTQDDLTTEDILVLDCCREIYVWIGCHSDLNSKQQALNIG 678
P LF C+ G EI +FTQDDL D+ +LD +I+ WIG ++ + K+ A
Sbjct: 1 PRLFECSNKTGRFLATEIVDFTQDDLDENDVYLLDTWDQIFFWIGKGANESEKEAAAETA 60
Query: 679 QKFLETDILVEGLSLETPIYVVTEGHEPPFFTCFF-AWDPL 718
Q++L + L+TPI VV +G EPP FT +F AWDPL
Sbjct: 61 QEYLRSH--PGSRDLDTPIIVVKQGFEPPTFTGWFMAWDPL 99
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 260 NLQGKLCQIAANSLNKDMLEKDKCYMLDCVNEVFVWTGRNTSITERRISISASEDFLRNQ 319
N G+ +D L+++ Y+LD +++F W G+ + +E+ + ++++LR+
Sbjct: 8 NKTGRFLATEIVDFTQDDLDENDVYLLDTWDQIFFWIGKGANESEKEAAAETAQEYLRSH 67
Query: 320 --GRTTGTHLTFLTEGLETTVFRSYFDSW 346
R T + + +G E F +F +W
Sbjct: 68 PGSRDLDTPIIVVKQGFEPPTFTGWFMAW 96
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 155 VPFSRSSLNHNDVFIVDTASKIFLFSGCNSSIQERAKALEVVQ 197
V F++ L+ NDV+++DT +IF + G ++ E+ A E Q
Sbjct: 19 VDFTQDDLDENDVYLLDTWDQIFFWIGKGANESEKEAAAETAQ 61
>pdb|1SVQ|A Chain A, Structure Of Severin Domain 2 In Solution
pdb|1SVR|A Chain A, Structure Of Severin Domain 2 In Solution
Length = 114
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 137 YKISMLTCKGDHVVRVKEVPFSRSSLNHNDVFIVDTASKIFLFSGCNSSIQERAKALEVV 196
YK +L GD +V EVP + SSLN D F++D I+ F+G SS QE+ KA EV
Sbjct: 11 YKPRLLHISGDKNAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVA 70
Query: 197 QYIKEDKHGGKCGVATVEDGKFV-GDSDV-GEFWSLFGGYAPI 237
+ I ++ G+ VE F DSD+ EFW L GG I
Sbjct: 71 RAIDAERK----GLPKVE--VFCETDSDIPAEFWKLLGGKGAI 107
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 513 EKKMALFCIQGTSPCNMQAFQVDRVSTCLNSSYCYILQNGASVFTWIGNLSSSRDHDLLD 572
E K L I G N + +V ++ LNS C++L G +++ + G+ SS ++ +
Sbjct: 10 EYKPRLLHISGDK--NAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAA 67
Query: 573 RMVELIN------PTWQPISVREGSEPEVFWNALGGK 603
+ I+ P + + P FW LGGK
Sbjct: 68 EVARAIDAERKGLPKVEVFCETDSDIPAEFWKLLGGK 104
>pdb|1SVY|A Chain A, Severin Domain 2, 1.75 Angstrom Crystal Structure
Length = 114
Score = 65.5 bits (158), Expect = 9e-11, Method: Composition-based stats.
Identities = 42/109 (38%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 137 YKISMLTCKGDHVVRVKEVPFSRSSLNHNDVFIVDTASKIFLFSGCNSSIQERAKALEVV 196
YK +L GD +V EVP + SSLN D F++D I+ F+G SS QE+ KA EV
Sbjct: 11 YKPRLLHISGDKNAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVA 70
Query: 197 QYIKEDKHGGKCGVATVEDGKFVGDSDV-GEFWSLFGGYAPIPRDSPSA 244
+ I ++ G+ VE DSD+ EFW L GG I +A
Sbjct: 71 RAIDAERK----GLPKVEVFXET-DSDIPAEFWKLLGGKGAIAAKHETA 114
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 8/105 (7%)
Query: 513 EKKMALFCIQGTSPCNMQAFQVDRVSTCLNSSYCYILQNGASVFTWIGNLSSSRDHDLLD 572
E K L I G N + +V ++ LNS C++L G +++ + G+ SS ++ +
Sbjct: 10 EYKPRLLHISGDK--NAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAA 67
Query: 573 RMVELIN------PTWQPISVREGSEPEVFWNALGGKSEYPREKE 611
+ I+ P + + P FW LGGK + E
Sbjct: 68 EVARAIDAERKGLPKVEVFXETDSDIPAEFWKLLGGKGAIAAKHE 112
>pdb|1KCQ|A Chain A, Human Gelsolin Domain 2 With A Cd2+ Bound
Length = 104
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 43/76 (56%)
Query: 141 MLTCKGDHVVRVKEVPFSRSSLNHNDVFIVDTASKIFLFSGCNSSIQERAKALEVVQYIK 200
+ KG VVR EVP S S N+ D FI+D + I + G NS+ ER KA +V + I+
Sbjct: 5 LFQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGIR 64
Query: 201 EDKHGGKCGVATVEDG 216
+++ G+ V E+G
Sbjct: 65 DNERSGRARVHVSEEG 80
>pdb|2FG6|X Chain X, N-Succinyl-L-Ornithine Transcarbamylase From B. Fragilis
Complexed With Sulfate And N-Succinyl-L-Norvaline
pdb|2FG6|Y Chain Y, N-Succinyl-L-Ornithine Transcarbamylase From B. Fragilis
Complexed With Sulfate And N-Succinyl-L-Norvaline
pdb|2FG6|Z Chain Z, N-Succinyl-L-Ornithine Transcarbamylase From B. Fragilis
Complexed With Sulfate And N-Succinyl-L-Norvaline
pdb|2FG6|C Chain C, N-Succinyl-L-Ornithine Transcarbamylase From B. Fragilis
Complexed With Sulfate And N-Succinyl-L-Norvaline
pdb|2FG6|D Chain D, N-Succinyl-L-Ornithine Transcarbamylase From B. Fragilis
Complexed With Sulfate And N-Succinyl-L-Norvaline
pdb|2FG6|E Chain E, N-Succinyl-L-Ornithine Transcarbamylase From B. Fragilis
Complexed With Sulfate And N-Succinyl-L-Norvaline
pdb|2FG7|X Chain X, N-Succinyl-L-Ornithine Transcarbamylase From B. Fragilis
Complexed With Carbamoyl Phosphate And
N-Succinyl-L-Norvaline
pdb|2FG7|Y Chain Y, N-Succinyl-L-Ornithine Transcarbamylase From B. Fragilis
Complexed With Carbamoyl Phosphate And
N-Succinyl-L-Norvaline
pdb|2FG7|Z Chain Z, N-Succinyl-L-Ornithine Transcarbamylase From B. Fragilis
Complexed With Carbamoyl Phosphate And
N-Succinyl-L-Norvaline
pdb|2FG7|C Chain C, N-Succinyl-L-Ornithine Transcarbamylase From B. Fragilis
Complexed With Carbamoyl Phosphate And
N-Succinyl-L-Norvaline
pdb|2FG7|D Chain D, N-Succinyl-L-Ornithine Transcarbamylase From B. Fragilis
Complexed With Carbamoyl Phosphate And
N-Succinyl-L-Norvaline
pdb|2FG7|E Chain E, N-Succinyl-L-Ornithine Transcarbamylase From B. Fragilis
Complexed With Carbamoyl Phosphate And
N-Succinyl-L-Norvaline
Length = 338
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 622 FTCTLTEGDLK--VKEIYNFTQDDLTTEDILVLDCCREIYVWIGCHSDLNSKQQALNIGQ 679
FTC GDLK + E + +D ++ I+ + L++++ ALN+G
Sbjct: 24 FTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGM 83
Query: 680 KFLETDILVEGLSLETPIYVVTEGHEP-------PFFTCF 712
+ DI LET V+ +G +P P C+
Sbjct: 84 NVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCY 123
>pdb|1JS1|X Chain X, Crystal Structure Of A New Transcarbamylase From The
Anaerobic Bacterium Bacteroides Fragilis At 2.0 A
Resolution
pdb|1JS1|Y Chain Y, Crystal Structure Of A New Transcarbamylase From The
Anaerobic Bacterium Bacteroides Fragilis At 2.0 A
Resolution
pdb|1JS1|Z Chain Z, Crystal Structure Of A New Transcarbamylase From The
Anaerobic Bacterium Bacteroides Fragilis At 2.0 A
Resolution
Length = 324
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 622 FTCTLTEGDLK--VKEIYNFTQDDLTTEDILVLDCCREIYVWIGCHSDLNSKQQALNIGQ 679
FTC GDLK + E + +D ++ I+ + L++++ ALN+G
Sbjct: 4 FTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGM 63
Query: 680 KFLETDILVEGLSLETPIYVVTEGHEP 706
+ DI LET V+ +G +P
Sbjct: 64 NVIVLDINQGAWKLETERGVIMDGDKP 90
>pdb|1SMI|A Chain A, A Single Mutation Of P450 Bm3 Induces The Conformational
Rearrangement Seen Upon Substrate-Binding In Wild-Type
Enzyme
pdb|1SMI|B Chain B, A Single Mutation Of P450 Bm3 Induces The Conformational
Rearrangement Seen Upon Substrate-Binding In Wild-Type
Enzyme
pdb|1SMJ|A Chain A, Structure Of The A264e Mutant Of Cytochrome P450 Bm3
Complexed With Palmitoleate
pdb|1SMJ|B Chain B, Structure Of The A264e Mutant Of Cytochrome P450 Bm3
Complexed With Palmitoleate
pdb|1SMJ|C Chain C, Structure Of The A264e Mutant Of Cytochrome P450 Bm3
Complexed With Palmitoleate
pdb|1SMJ|D Chain D, Structure Of The A264e Mutant Of Cytochrome P450 Bm3
Complexed With Palmitoleate
Length = 471
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 68/175 (38%), Gaps = 34/175 (19%)
Query: 274 NKDMLEKDKCYMLDCVNEVFVWTGRNTSITERRISISASEDFLRN----QGRTTGTHL-- 327
NK ++D M D V+++ I +R+ S S+D L + + TG L
Sbjct: 201 NKRQFQEDIKVMNDLVDKI---------IADRKASGEQSDDLLTHMLNGKDPETGEPLDD 251
Query: 328 --------TFLTEGLETTVFRSYFDSWPQIAEPKLYDEGREKVAAIFKQQGHDVKELPEE 379
TFL EG ETT F + + P + + E+ A + V +P
Sbjct: 252 ENIRYQIITFLIEGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVL------VDPVPS- 304
Query: 380 DFEPYVNCRGILKVWRVNGDELSLLPAAEQMKLFSGDCYIVKYTYPGNGRDENVI 434
Y + + V V + L L P A L++ + ++ YP DE ++
Sbjct: 305 ----YKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMV 355
>pdb|1FLD|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant: G57t Oxidized
pdb|2FLV|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant: G57t Reduced
(150k)
pdb|2FVX|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant: G57t Reduced
(277k)
pdb|5NUL|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant: G57t
Semiquinone (150k)
Length = 138
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 16/123 (13%)
Query: 134 GETYKISMLTCKGDHVVRVKEVPFSRSSLNHNDVFIVDTASKIFLFSGCNSSIQERAKAL 193
G T K++ L KG + E +++N +DV I + ++ L GC++ E +
Sbjct: 10 GNTEKMAELIAKG-----IIESGKDVNTINVSDVNIDELLNEDILILGCSAMTDEVLEES 64
Query: 194 EVVQYIKE--DKHGGK----CGVATVEDGKFVGDSDVGEFWSLFGGYAPIPRDSPSAFQQ 247
E +I+E K GK G DGK++ D F GY + ++P Q
Sbjct: 65 EFEPFIEEISTKISGKKVALFGSYGWGDGKWMRD-----FEERMNGYGCVVVETPLIVQN 119
Query: 248 QPD 250
+PD
Sbjct: 120 EPD 122
>pdb|3KIH|A Chain A, The Crystal Structures Of Two Fragments Truncated From
5-Bla Propeller Lectin, Tachylectin-2 (Lib2-D2-15)
pdb|3KIH|B Chain B, The Crystal Structures Of Two Fragments Truncated From
5-Bla Propeller Lectin, Tachylectin-2 (Lib2-D2-15)
pdb|3KIH|C Chain C, The Crystal Structures Of Two Fragments Truncated From
5-Bla Propeller Lectin, Tachylectin-2 (Lib2-D2-15)
pdb|3KIH|D Chain D, The Crystal Structures Of Two Fragments Truncated From
5-Bla Propeller Lectin, Tachylectin-2 (Lib2-D2-15)
pdb|3KIH|E Chain E, The Crystal Structures Of Two Fragments Truncated From
5-Bla Propeller Lectin, Tachylectin-2 (Lib2-D2-15)
Length = 97
Score = 30.0 bits (66), Expect = 5.1, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 45 GSAYVILNTALLKSGPPQHDIHYWLG 70
G Y +LN + K PP HD WLG
Sbjct: 16 GELYGVLNDKIYKGTPPTHDNDNWLG 41
>pdb|3NLL|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant: G57a Oxidized
Length = 138
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 16/123 (13%)
Query: 134 GETYKISMLTCKGDHVVRVKEVPFSRSSLNHNDVFIVDTASKIFLFSGCNSSIQERAKAL 193
G T K++ L KG + E +++N +DV I + ++ L GC++ E +
Sbjct: 10 GNTEKMAELIAKG-----IIESGKDVNTINVSDVNIDELLNEDILILGCSAMADEVLEES 64
Query: 194 EVVQYIKE--DKHGGK----CGVATVEDGKFVGDSDVGEFWSLFGGYAPIPRDSPSAFQQ 247
E +I+E K GK G DGK++ D F GY + ++P Q
Sbjct: 65 EFEPFIEEISTKISGKKVALFGSYGWGDGKWMRD-----FEERMNGYGCVVVETPLIVQN 119
Query: 248 QPD 250
+PD
Sbjct: 120 EPD 122
>pdb|1WXM|A Chain A, Solution Structure Of The N-Terminal Ras-Binding Domain
(Rbd) In Human A-Raf Kinase
Length = 86
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 83 DKALELDAALGSCTVQYREVQGQETEKFLSYFRPCIIPLDGK---YSLRSGKSNG 134
DKAL++ C V YR ++G++T ++ + I PLDG+ + SG S+G
Sbjct: 35 DKALKVRGLNQDCCVVYRLIKGRKT---VTAWDTAIAPLDGEELIVEVLSGPSSG 86
>pdb|1NJ8|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanocaldococcus Janaschii
pdb|1NJ8|B Chain B, Crystal Structure Of Prolyl-Trna Synthetase From
Methanocaldococcus Janaschii
pdb|1NJ8|C Chain C, Crystal Structure Of Prolyl-Trna Synthetase From
Methanocaldococcus Janaschii
pdb|1NJ8|D Chain D, Crystal Structure Of Prolyl-Trna Synthetase From
Methanocaldococcus Janaschii
Length = 459
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 16/109 (14%)
Query: 589 EGSEPEVFWNALGGKSEYPREKEIKGFIEDPHLFTCTL-----TEGDLKVKEIYN-FTQD 642
+G E EV+W GGK++ + ++ E P + L T+ +K+ +I N F +
Sbjct: 79 KGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYE 138
Query: 643 DLTTEDILVLDCCREIYVWIGCHSDLNSKQQALN-------IGQKFLET 684
T ++ L REI + H+ ++K++A N I +KF +T
Sbjct: 139 TKHTRPLIRL---REIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDT 184
>pdb|1TL2|A Chain A, Tachylectin-2 From Tachypleus Tridentatus (Japanese
Horseshoe Crab)
Length = 236
Score = 29.3 bits (64), Expect = 8.5, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 45 GSAYVILNTALLKSGPPQHDIHYWLG 70
G Y +LN + K PP HD W+G
Sbjct: 52 GELYGVLNDKIYKGTPPTHDNDNWMG 77
>pdb|1FLA|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant: G57d Reduced
pdb|4NLL|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant: G57d Oxidized
Length = 138
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 16/123 (13%)
Query: 134 GETYKISMLTCKGDHVVRVKEVPFSRSSLNHNDVFIVDTASKIFLFSGCNSSIQERAKAL 193
G T K++ L KG + E +++N +DV I + ++ L GC++ E +
Sbjct: 10 GNTEKMAELIAKG-----IIESGKDVNTINVSDVNIDELLNEDILILGCSAMDDEVLEES 64
Query: 194 EVVQYIKE--DKHGGK----CGVATVEDGKFVGDSDVGEFWSLFGGYAPIPRDSPSAFQQ 247
E +I+E K GK G DGK++ D F GY + ++P Q
Sbjct: 65 EFEPFIEEISTKISGKKVALFGSYGWGDGKWMRD-----FEERMNGYGCVVVETPLIVQN 119
Query: 248 QPD 250
+PD
Sbjct: 120 EPD 122
>pdb|1FVX|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant: G57n Oxidized
Length = 138
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 16/123 (13%)
Query: 134 GETYKISMLTCKGDHVVRVKEVPFSRSSLNHNDVFIVDTASKIFLFSGCNSSIQERAKAL 193
G T K++ L KG + E +++N +DV I + ++ L GC++ E +
Sbjct: 10 GNTEKMAELIAKG-----IIESGKDVNTINVSDVNIDELLNEDILILGCSAMNDEVLEES 64
Query: 194 EVVQYIKE--DKHGGK----CGVATVEDGKFVGDSDVGEFWSLFGGYAPIPRDSPSAFQQ 247
E +I+E K GK G DGK++ D F GY + ++P Q
Sbjct: 65 EFEPFIEEISTKISGKKVALFGSYGWGDGKWMRD-----FEERMNGYGCVVVETPLIVQN 119
Query: 248 QPD 250
+PD
Sbjct: 120 EPD 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,937,123
Number of Sequences: 62578
Number of extensions: 992857
Number of successful extensions: 2440
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2207
Number of HSP's gapped (non-prelim): 100
length of query: 743
length of database: 14,973,337
effective HSP length: 106
effective length of query: 637
effective length of database: 8,340,069
effective search space: 5312623953
effective search space used: 5312623953
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)